locus-tag class description LDL78_00005 PF00308 Bacterial dnaA protein LDL78_00005 PF08299 Bacterial dnaA protein helix-turn-helix LDL78_00005 PF11638 DnaA N-terminal domain LDL78_00010 PF01451 Low molecular weight phosphotyrosine protein phosphatase LDL78_00020 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LDL78_00040 PF02585 GlcNAc-PI de-N-acetylase LDL78_00045 PF01053 Cys/Met metabolism PLP-dependent enzyme LDL78_00050 PF01979 Amidohydrolase family LDL78_00075 PF12848 ABC transporter LDL78_00075 PF00005 ABC transporter LDL78_00085 PF01039 Carboxyl transferase domain LDL78_00115 PF01040 UbiA prenyltransferase family LDL78_00155 PF01300 Telomere recombination LDL78_00170 PF00580 UvrD/REP helicase N-terminal domain LDL78_00170 PF13361 UvrD-like helicase C-terminal domain LDL78_00175 PF01645 Conserved region in glutamate synthase LDL78_00185 PF00072 Response regulator receiver domain LDL78_00185 PF00196 Bacterial regulatory proteins, luxR family LDL78_00190 PF07730 Histidine kinase LDL78_00190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL78_00210 PF11838 ERAP1-like C-terminal domain LDL78_00210 PF01433 Peptidase family M1 domain LDL78_00215 PF00270 DEAD/DEAH box helicase LDL78_00215 PF00271 Helicase conserved C-terminal domain LDL78_00215 PF17191 RecG wedge domain LDL78_00225 PF04607 Region found in RelA / SpoT proteins LDL78_00225 PF13291 ACT domain LDL78_00225 PF02824 TGS domain LDL78_00230 PF01475 Ferric uptake regulator family LDL78_00235 PF00709 Adenylosuccinate synthetase LDL78_00245 PF00202 Aminotransferase class-III LDL78_00265 PF08501 Shikimate dehydrogenase substrate binding domain LDL78_00265 PF01488 Shikimate / quinate 5-dehydrogenase LDL78_00265 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LDL78_00275 PF03819 MazG nucleotide pyrophosphohydrolase domain LDL78_00285 PF01327 Polypeptide deformylase LDL78_00290 PF03652 Holliday junction resolvase LDL78_00295 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LDL78_00295 PF14602 Hexapeptide repeat of succinyl-transferase LDL78_00310 PF00535 Glycosyl transferase family 2 LDL78_00320 PF00535 Glycosyl transferase family 2 LDL78_00325 PF00535 Glycosyl transferase family 2 LDL78_00335 PF00535 Glycosyl transferase family 2 LDL78_00340 PF01300 Telomere recombination LDL78_00350 PF01368 DHH family LDL78_00350 PF01743 Poly A polymerase head domain LDL78_00350 PF00571 CBS domain LDL78_00350 PF02272 DHHA1 domain LDL78_00355 PF02628 Cytochrome oxidase assembly protein LDL78_00375 PF00270 DEAD/DEAH box helicase LDL78_00375 PF00271 Helicase conserved C-terminal domain LDL78_00375 PF00570 HRDC domain LDL78_00375 PF16124 RecQ zinc-binding LDL78_00375 PF09382 RQC domain LDL78_00380 PF00571 CBS domain LDL78_00380 PF01380 SIS domain LDL78_00385 PF00902 Sec-independent protein translocase protein (TatC) LDL78_00395 PF00005 ABC transporter LDL78_00395 PF12399 Branched-chain amino acid ATP-binding cassette transporter LDL78_00420 PF02397 Bacterial sugar transferase LDL78_00425 PF00534 Glycosyl transferases group 1 LDL78_00425 PF13439 Glycosyltransferase Family 4 LDL78_00465 PF01541 GIY-YIG catalytic domain LDL78_00470 PF00534 Glycosyl transferases group 1 LDL78_00480 PF13439 Glycosyltransferase Family 4 LDL78_00480 PF00534 Glycosyl transferases group 1 LDL78_00490 PF00535 Glycosyl transferase family 2 LDL78_00505 PF13439 Glycosyltransferase Family 4 LDL78_00505 PF00534 Glycosyl transferases group 1 LDL78_00510 PF13439 Glycosyltransferase Family 4 LDL78_00510 PF00534 Glycosyl transferases group 1 LDL78_00520 PF13439 Glycosyltransferase Family 4 LDL78_00520 PF00534 Glycosyl transferases group 1 LDL78_00530 PF01757 Acyltransferase family LDL78_00540 PF00535 Glycosyl transferase family 2 LDL78_00545 PF00535 Glycosyl transferase family 2 LDL78_00555 PF00534 Glycosyl transferases group 1 LDL78_00560 PF01209 ubiE/COQ5 methyltransferase family LDL78_00565 PF00535 Glycosyl transferase family 2 LDL78_00585 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LDL78_00595 PF00005 ABC transporter LDL78_00615 PF01545 Cation efflux family LDL78_00615 PF16916 Dimerisation domain of Zinc Transporter LDL78_00655 PF01370 NAD dependent epimerase/dehydratase family LDL78_00660 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LDL78_00660 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LDL78_00660 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LDL78_00665 PF13807 G-rich domain on putative tyrosine kinase LDL78_00665 PF02706 Chain length determinant protein LDL78_00665 PF13614 AAA domain LDL78_00685 PF00005 ABC transporter LDL78_00685 PF12848 ABC transporter LDL78_00685 PF16326 ABC transporter C-terminal domain LDL78_00695 PF00005 ABC transporter LDL78_00705 PF01923 Cobalamin adenosyltransferase LDL78_00715 PF01043 SecA preprotein cross-linking domain LDL78_00715 PF07517 SecA DEAD-like domain LDL78_00715 PF07516 SecA Wing and Scaffold domain LDL78_00740 PF08281 Sigma-70, region 4 LDL78_00740 PF04542 Sigma-70 region 2 LDL78_00750 PF02566 OsmC-like protein LDL78_00765 PF00781 Diacylglycerol kinase catalytic domain LDL78_00770 PF00884 Sulfatase LDL78_00780 PF01370 NAD dependent epimerase/dehydratase family LDL78_00785 PF00535 Glycosyl transferase family 2 LDL78_00800 PF01569 PAP2 superfamily LDL78_00810 PF01554 MatE LDL78_00825 PF00005 ABC transporter LDL78_00830 PF02086 D12 class N6 adenine-specific DNA methyltransferase LDL78_00880 PF04389 Peptidase family M28 LDL78_00880 PF04151 Bacterial pre-peptidase C-terminal domain LDL78_00885 PF03976 Polyphosphate kinase 2 (PPK2) LDL78_00890 PF00158 Sigma-54 interaction domain LDL78_00890 PF00072 Response regulator receiver domain LDL78_00890 PF02954 Bacterial regulatory protein, Fis family LDL78_00905 PF13732 Domain of unknown function (DUF4162) LDL78_00905 PF00005 ABC transporter LDL78_00910 PF00684 DnaJ central domain LDL78_00910 PF01556 DnaJ C terminal domain LDL78_00910 PF00226 DnaJ domain LDL78_00915 PF01025 GrpE LDL78_00925 PF08338 Domain of unknown function (DUF1731) LDL78_00925 PF01370 NAD dependent epimerase/dehydratase family LDL78_00930 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LDL78_00930 PF01266 FAD dependent oxidoreductase LDL78_00940 PF01063 Amino-transferase class IV LDL78_00970 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LDL78_00995 PF01037 Lrp/AsnC ligand binding domain LDL78_01005 PF01642 Methylmalonyl-CoA mutase LDL78_01005 PF02310 B12 binding domain LDL78_01025 PF01497 Periplasmic binding protein LDL78_01030 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LDL78_01035 PF03462 PCRF domain LDL78_01035 PF00472 RF-1 domain LDL78_01045 PF00586 AIR synthase related protein, N-terminal domain LDL78_01045 PF02769 AIR synthase related protein, C-terminal domain LDL78_01050 PF07676 WD40-like Beta Propeller Repeat LDL78_01055 PF03783 Curli production assembly/transport component CsgG LDL78_01080 PF00120 Glutamine synthetase, catalytic domain LDL78_01080 PF18318 Glutamine synthetase C-terminal domain LDL78_01080 PF12437 Glutamine synthetase type III N terminal LDL78_01085 PF01699 Sodium/calcium exchanger protein LDL78_01100 PF00156 Phosphoribosyl transferase domain LDL78_01125 PF00121 Triosephosphate isomerase LDL78_01130 PF08534 Redoxin LDL78_01135 PF00528 Binding-protein-dependent transport system inner membrane component LDL78_01150 PF00809 Pterin binding enzyme LDL78_01155 PF02457 DisA bacterial checkpoint controller nucleotide-binding LDL78_01160 PF00664 ABC transporter transmembrane region LDL78_01160 PF00005 ABC transporter LDL78_01165 PF01416 tRNA pseudouridine synthase LDL78_01180 PF07497 Rho termination factor, RNA-binding domain LDL78_01180 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LDL78_01190 PF00293 NUDIX domain LDL78_01195 PF00156 Phosphoribosyl transferase domain LDL78_01205 PF03099 Biotin/lipoate A/B protein ligase family LDL78_01205 PF02237 Biotin protein ligase C terminal domain LDL78_01215 PF01434 Peptidase family M41 LDL78_01215 PF17862 AAA+ lid domain LDL78_01215 PF00004 ATPase family associated with various cellular activities (AAA) LDL78_01230 PF02666 Phosphatidylserine decarboxylase LDL78_01245 PF00133 tRNA synthetases class I (I, L, M and V) LDL78_01245 PF08264 Anticodon-binding domain of tRNA LDL78_01245 PF10458 Valyl tRNA synthetase tRNA binding arm LDL78_01260 PF00155 Aminotransferase class I and II LDL78_01265 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LDL78_01265 PF01565 FAD binding domain LDL78_01280 PF00535 Glycosyl transferase family 2 LDL78_01285 PF08281 Sigma-70, region 4 LDL78_01285 PF04542 Sigma-70 region 2 LDL78_01290 PF04055 Radical SAM superfamily LDL78_01295 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LDL78_01295 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LDL78_01300 PF00512 His Kinase A (phospho-acceptor) domain LDL78_01300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL78_01300 PF00072 Response regulator receiver domain LDL78_01300 PF01627 Hpt domain LDL78_01305 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LDL78_01310 PF01784 NIF3 (NGG1p interacting factor 3) LDL78_01320 PF01625 Peptide methionine sulfoxide reductase LDL78_01360 PF00266 Aminotransferase class-V LDL78_01365 PF01494 FAD binding domain LDL78_01370 PF01042 Endoribonuclease L-PSP LDL78_01375 PF00171 Aldehyde dehydrogenase family LDL78_01380 PF00106 short chain dehydrogenase LDL78_01395 PF00854 POT family LDL78_01400 PF01596 O-methyltransferase LDL78_01405 PF01569 PAP2 superfamily LDL78_01410 PF02416 mttA/Hcf106 family LDL78_01435 PF03575 Peptidase family S51 LDL78_01450 PF02557 D-alanyl-D-alanine carboxypeptidase LDL78_01455 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LDL78_01455 PF01676 Metalloenzyme superfamily LDL78_01470 PF00557 Metallopeptidase family M24 LDL78_01475 PF01209 ubiE/COQ5 methyltransferase family LDL78_01485 PF02424 ApbE family LDL78_01495 PF00175 Oxidoreductase NAD-binding domain LDL78_01495 PF00111 2Fe-2S iron-sulfur cluster binding domain LDL78_01495 PF00970 Oxidoreductase FAD-binding domain LDL78_01500 PF02508 Rnf-Nqr subunit, membrane protein LDL78_01505 PF02508 Rnf-Nqr subunit, membrane protein LDL78_01510 PF04205 FMN-binding domain LDL78_01515 PF03116 NQR2, RnfD, RnfE family LDL78_01520 PF11973 NQRA C-terminal domain LDL78_01520 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) LDL78_01535 PF04379 ApaG domain LDL78_01545 PF00171 Aldehyde dehydrogenase family LDL78_01555 PF08534 Redoxin LDL78_01575 PF00293 NUDIX domain LDL78_01580 PF02527 rRNA small subunit methyltransferase G LDL78_01585 PF00487 Fatty acid desaturase LDL78_01590 PF00155 Aminotransferase class I and II LDL78_01600 PF02222 ATP-grasp domain LDL78_01605 PF02386 Cation transport protein LDL78_01610 PF02254 TrkA-N domain LDL78_01610 PF02080 TrkA-C domain LDL78_01615 PF01209 ubiE/COQ5 methyltransferase family LDL78_01625 PF08032 RNA 2'-O ribose methyltransferase substrate binding LDL78_01625 PF00588 SpoU rRNA Methylase family LDL78_01635 PF01116 Fructose-bisphosphate aldolase class-II LDL78_01640 PF01039 Carboxyl transferase domain LDL78_01650 PF00312 Ribosomal protein S15 LDL78_01655 PF00575 S1 RNA binding domain LDL78_01655 PF03725 3' exoribonuclease family, domain 2 LDL78_01655 PF01138 3' exoribonuclease family, domain 1 LDL78_01655 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LDL78_01655 PF00013 KH domain LDL78_01680 PF04545 Sigma-70, region 4 LDL78_01680 PF04542 Sigma-70 region 2 LDL78_01680 PF00140 Sigma-70 factor, region 1.2 LDL78_01680 PF03979 Sigma-70 factor, region 1.1 LDL78_01680 PF04539 Sigma-70 region 3 LDL78_01690 PF00834 Ribulose-phosphate 3 epimerase family LDL78_01700 PF06167 Glucose-regulated metallo-peptidase M90 LDL78_01710 PF07715 TonB-dependent Receptor Plug Domain LDL78_01710 PF00593 TonB dependent receptor LDL78_01730 PF00593 TonB dependent receptor LDL78_01730 PF07715 TonB-dependent Receptor Plug Domain LDL78_01740 PF03773 Predicted permease LDL78_01750 PF00873 AcrB/AcrD/AcrF family LDL78_01755 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDL78_01790 PF00005 ABC transporter LDL78_01790 PF02687 FtsX-like permease family LDL78_01790 PF12704 MacB-like periplasmic core domain LDL78_01795 PF01808 AICARFT/IMPCHase bienzyme LDL78_01795 PF02142 MGS-like domain LDL78_01815 PF03717 Penicillin-binding Protein dimerisation domain LDL78_01815 PF00905 Penicillin binding protein transpeptidase domain LDL78_01820 PF01098 Cell cycle protein LDL78_01835 PF12911 N-terminal TM domain of oligopeptide transport permease C LDL78_01835 PF00528 Binding-protein-dependent transport system inner membrane component LDL78_01840 PF11818 C-terminal domain of tail specific protease (DUF3340) LDL78_01840 PF00595 PDZ domain LDL78_01840 PF03572 Peptidase family S41 LDL78_01840 PF17804 Tail specific protease N-terminal domain LDL78_01845 PF01975 Survival protein SurE LDL78_01855 PF01467 Cytidylyltransferase-like LDL78_01865 PF01649 Ribosomal protein S20 LDL78_01875 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LDL78_01875 PF09180 Prolyl-tRNA synthetase, C-terminal LDL78_01875 PF03129 Anticodon binding domain LDL78_01890 PF01227 GTP cyclohydrolase I LDL78_01895 PF09190 DALR domain LDL78_01895 PF01406 tRNA synthetases class I (C) catalytic domain LDL78_01900 PF01809 Putative membrane protein insertion efficiency factor LDL78_01905 PF01790 Prolipoprotein diacylglyceryl transferase LDL78_01915 PF02355 Protein export membrane protein LDL78_01915 PF07549 SecD/SecF GG Motif LDL78_01940 PF03477 ATP cone domain LDL78_01940 PF02867 Ribonucleotide reductase, barrel domain LDL78_01940 PF00317 Ribonucleotide reductase, all-alpha domain LDL78_01950 PF00056 lactate/malate dehydrogenase, NAD binding domain LDL78_01950 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LDL78_01955 PF00204 DNA gyrase B LDL78_01955 PF00986 DNA gyrase B subunit, carboxyl terminus LDL78_01955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL78_01955 PF01751 Toprim domain LDL78_01965 PF04055 Radical SAM superfamily LDL78_01975 PF05872 Bacterial protein of unknown function (DUF853) LDL78_02010 PF06803 Protein of unknown function (DUF1232) LDL78_02015 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LDL78_02015 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LDL78_02025 PF00448 SRP54-type protein, GTPase domain LDL78_02025 PF02881 SRP54-type protein, helical bundle domain LDL78_02025 PF02978 Signal peptide binding domain LDL78_02030 PF07694 5TMR of 5TMR-LYT LDL78_02030 PF13492 GAF domain LDL78_02030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL78_02030 PF06580 Histidine kinase LDL78_02035 PF04397 LytTr DNA-binding domain LDL78_02035 PF00072 Response regulator receiver domain LDL78_02050 PF13520 Amino acid permease LDL78_02065 PF00583 Acetyltransferase (GNAT) family LDL78_02075 PF01758 Sodium Bile acid symporter family LDL78_02090 PF00271 Helicase conserved C-terminal domain LDL78_02090 PF00270 DEAD/DEAH box helicase LDL78_02095 PF07568 Histidine kinase LDL78_02095 PF12282 Signal transduction histidine kinase LDL78_02095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL78_02100 PF00072 Response regulator receiver domain LDL78_02100 PF00486 Transcriptional regulatory protein, C terminal LDL78_02115 PF08240 Alcohol dehydrogenase GroES-like domain LDL78_02115 PF00107 Zinc-binding dehydrogenase LDL78_02155 PF00484 Carbonic anhydrase LDL78_02165 PF03485 Arginyl tRNA synthetase N terminal domain LDL78_02165 PF05746 DALR anticodon binding domain LDL78_02165 PF00750 tRNA synthetases class I (R) LDL78_02170 PF01914 MarC family integral membrane protein LDL78_02200 PF02424 ApbE family LDL78_02220 PF00581 Rhodanese-like domain LDL78_02220 PF17773 UPF0176 acylphosphatase like domain LDL78_02225 PF00581 Rhodanese-like domain LDL78_02225 PF17773 UPF0176 acylphosphatase like domain LDL78_02225 PF12368 Rhodanase C-terminal LDL78_02235 PF00578 AhpC/TSA family LDL78_02240 PF04715 Anthranilate synthase component I, N terminal region LDL78_02240 PF00425 chorismate binding enzyme LDL78_02245 PF00117 Glutamine amidotransferase class-I LDL78_02250 PF02885 Glycosyl transferase family, helical bundle domain LDL78_02250 PF00591 Glycosyl transferase family, a/b domain LDL78_02255 PF00218 Indole-3-glycerol phosphate synthase LDL78_02260 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LDL78_02265 PF00291 Pyridoxal-phosphate dependent enzyme LDL78_02270 PF00290 Tryptophan synthase alpha chain LDL78_02275 PF17070 30S ribosomal protein Thx LDL78_02280 PF00368 Hydroxymethylglutaryl-coenzyme A reductase LDL78_02295 PF03309 Type III pantothenate kinase LDL78_02320 PF03471 Transporter associated domain LDL78_02320 PF00571 CBS domain LDL78_02325 PF00639 PPIC-type PPIASE domain LDL78_02325 PF09312 SurA N-terminal domain LDL78_02330 PF03301 Tryptophan 2,3-dioxygenase LDL78_02335 PF04343 Protein of unknown function, DUF488 LDL78_02370 PF01048 Phosphorylase superfamily LDL78_02375 PF01209 ubiE/COQ5 methyltransferase family LDL78_02390 PF00535 Glycosyl transferase family 2 LDL78_02405 PF18113 Rubredoxin binding C-terminal domain LDL78_02405 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDL78_02415 PF00535 Glycosyl transferase family 2 LDL78_02435 PF01225 Mur ligase family, catalytic domain LDL78_02435 PF02875 Mur ligase family, glutamate ligase domain LDL78_02435 PF08245 Mur ligase middle domain LDL78_02455 PF01018 GTP1/OBG LDL78_02455 PF01926 50S ribosome-binding GTPase LDL78_02485 PF13302 Acetyltransferase (GNAT) domain LDL78_02490 PF00144 Beta-lactamase LDL78_02490 PF11954 Domain of unknown function (DUF3471) LDL78_02500 PF00106 short chain dehydrogenase LDL78_02520 PF12833 Helix-turn-helix domain LDL78_02535 PF01268 Formate--tetrahydrofolate ligase LDL78_02550 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LDL78_02550 PF02222 ATP-grasp domain LDL78_02555 PF00731 AIR carboxylase LDL78_02565 PF01432 Peptidase family M3 LDL78_02570 PF04151 Bacterial pre-peptidase C-terminal domain LDL78_02570 PF04389 Peptidase family M28 LDL78_02590 PF02347 Glycine cleavage system P-protein LDL78_02595 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LDL78_02595 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LDL78_02610 PF00245 Alkaline phosphatase LDL78_02615 PF02405 Permease MlaE LDL78_02620 PF00005 ABC transporter LDL78_02620 PF09383 NIL domain LDL78_02635 PF00483 Nucleotidyl transferase LDL78_02635 PF01050 Mannose-6-phosphate isomerase LDL78_02650 PF02817 e3 binding domain LDL78_02650 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LDL78_02650 PF00364 Biotin-requiring enzyme LDL78_02655 PF00676 Dehydrogenase E1 component LDL78_02675 PF03781 Sulfatase-modifying factor enzyme 1 LDL78_02680 PF02875 Mur ligase family, glutamate ligase domain LDL78_02680 PF01225 Mur ligase family, catalytic domain LDL78_02680 PF08245 Mur ligase middle domain LDL78_02700 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LDL78_02700 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LDL78_02710 PF02875 Mur ligase family, glutamate ligase domain LDL78_02710 PF08245 Mur ligase middle domain LDL78_02715 PF00942 Cellulose binding domain LDL78_02715 PF03442 Carbohydrate binding domain X2 LDL78_02730 PF02472 Biopolymer transport protein ExbD/TolR LDL78_02735 PF01618 MotA/TolQ/ExbB proton channel family LDL78_02740 PF03600 Citrate transporter LDL78_02750 PF03702 Anhydro-N-acetylmuramic acid kinase LDL78_02755 PF02770 Acyl-CoA dehydrogenase, middle domain LDL78_02755 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LDL78_02755 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LDL78_02770 PF01351 Ribonuclease HII LDL78_02790 PF07494 Two component regulator propeller LDL78_02790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL78_02790 PF00512 His Kinase A (phospho-acceptor) domain LDL78_02790 PF00072 Response regulator receiver domain LDL78_02790 PF12833 Helix-turn-helix domain LDL78_02790 PF07495 Y_Y_Y domain LDL78_02795 PF00691 OmpA family LDL78_02805 PF03099 Biotin/lipoate A/B protein ligase family LDL78_02830 PF01336 OB-fold nucleic acid binding domain LDL78_02830 PF00152 tRNA synthetases class II (D, K and N) LDL78_02835 PF00041 Fibronectin type III domain LDL78_02835 PF00704 Glycosyl hydrolases family 18 LDL78_02850 PF00202 Aminotransferase class-III LDL78_02855 PF01476 LysM domain LDL78_02855 PF00877 NlpC/P60 family LDL78_02860 PF00291 Pyridoxal-phosphate dependent enzyme LDL78_02870 PF07730 Histidine kinase LDL78_02900 PF02779 Transketolase, pyrimidine binding domain LDL78_02900 PF00364 Biotin-requiring enzyme LDL78_02900 PF02780 Transketolase, C-terminal domain LDL78_02910 PF01012 Electron transfer flavoprotein domain LDL78_02910 PF00766 Electron transfer flavoprotein FAD-binding domain LDL78_02920 PF07670 Nucleoside recognition LDL78_02920 PF07662 Na+ dependent nucleoside transporter C-terminus LDL78_02920 PF01773 Na+ dependent nucleoside transporter N-terminus LDL78_02930 PF00303 Thymidylate synthase LDL78_02945 PF12867 DinB superfamily LDL78_02945 PF03781 Sulfatase-modifying factor enzyme 1 LDL78_02950 PF10017 Histidine-specific methyltransferase, SAM-dependent LDL78_02965 PF00186 Dihydrofolate reductase LDL78_02970 PF03881 Fructosamine kinase LDL78_02975 PF00698 Acyl transferase domain LDL78_02985 PF16363 GDP-mannose 4,6 dehydratase LDL78_02990 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LDL78_02995 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LDL78_02995 PF02390 Putative methyltransferase LDL78_03050 PF00488 MutS domain V LDL78_03050 PF01624 MutS domain I LDL78_03050 PF05188 MutS domain II LDL78_03050 PF05190 MutS family domain IV LDL78_03050 PF05192 MutS domain III LDL78_03055 PF08032 RNA 2'-O ribose methyltransferase substrate binding LDL78_03055 PF00588 SpoU rRNA Methylase family LDL78_03100 PF00202 Aminotransferase class-III LDL78_03105 PF01594 AI-2E family transporter LDL78_03125 PF05188 MutS domain II LDL78_03125 PF05192 MutS domain III LDL78_03125 PF05190 MutS family domain IV LDL78_03125 PF01624 MutS domain I LDL78_03125 PF00488 MutS domain V LDL78_03150 PF06969 HemN C-terminal domain LDL78_03150 PF04055 Radical SAM superfamily LDL78_03155 PF02075 Crossover junction endodeoxyribonuclease RuvC LDL78_03165 PF00535 Glycosyl transferase family 2 LDL78_03180 PF05569 BlaR1 peptidase M56 LDL78_03180 PF00905 Penicillin binding protein transpeptidase domain LDL78_03205 PF02233 NAD(P) transhydrogenase beta subunit LDL78_03210 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LDL78_03210 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LDL78_03210 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LDL78_03215 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LDL78_03215 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LDL78_03225 PF01272 Transcription elongation factor, GreA/GreB, C-term LDL78_03225 PF14760 Rnk N-terminus LDL78_03230 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LDL78_03230 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LDL78_03240 PF00072 Response regulator receiver domain LDL78_03240 PF02954 Bacterial regulatory protein, Fis family LDL78_03240 PF00158 Sigma-54 interaction domain LDL78_03245 PF08447 PAS fold LDL78_03245 PF00989 PAS fold LDL78_03245 PF00512 His Kinase A (phospho-acceptor) domain LDL78_03245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL78_03255 PF00072 Response regulator receiver domain LDL78_03255 PF01339 CheB methylesterase LDL78_03285 PF00574 Clp protease LDL78_03290 PF00085 Thioredoxin LDL78_03295 PF07733 Bacterial DNA polymerase III alpha NTPase domain LDL78_03295 PF14579 Helix-hairpin-helix motif LDL78_03295 PF01336 OB-fold nucleic acid binding domain LDL78_03295 PF02811 PHP domain LDL78_03295 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LDL78_03310 PF00886 Ribosomal protein S16 LDL78_03315 PF01782 RimM N-terminal domain LDL78_03320 PF05175 Methyltransferase small domain LDL78_03335 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LDL78_03335 PF02770 Acyl-CoA dehydrogenase, middle domain LDL78_03335 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LDL78_03355 PF00111 2Fe-2S iron-sulfur cluster binding domain LDL78_03360 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDL78_03365 PF01521 Iron-sulphur cluster biosynthesis LDL78_03365 PF01106 NifU-like domain LDL78_03370 PF01883 Iron-sulfur cluster assembly protein LDL78_03370 PF10609 NUBPL iron-transfer P-loop NTPase LDL78_03375 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LDL78_03375 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LDL78_03385 PF02390 Putative methyltransferase LDL78_03390 PF04101 Glycosyltransferase family 28 C-terminal domain LDL78_03390 PF03033 Glycosyltransferase family 28 N-terminal domain LDL78_03395 PF00512 His Kinase A (phospho-acceptor) domain LDL78_03395 PF00989 PAS fold LDL78_03395 PF16736 Single Cache-like LDL78_03395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL78_03400 PF00072 Response regulator receiver domain LDL78_03400 PF00486 Transcriptional regulatory protein, C terminal LDL78_03415 PF00579 tRNA synthetases class I (W and Y) LDL78_03430 PF01979 Amidohydrolase family LDL78_03435 PF00535 Glycosyl transferase family 2 LDL78_03450 PF01293 Phosphoenolpyruvate carboxykinase LDL78_03455 PF04241 Protein of unknown function (DUF423) LDL78_03465 PF04298 Putative neutral zinc metallopeptidase LDL78_03470 PF13603 Leucyl-tRNA synthetase, Domain 2 LDL78_03470 PF09334 tRNA synthetases class I (M) LDL78_03470 PF08264 Anticodon-binding domain of tRNA LDL78_03480 PF18075 FtsX extracellular domain LDL78_03490 PF02673 Bacitracin resistance protein BacA LDL78_03495 PF01509 TruB family pseudouridylate synthase (N terminal domain) LDL78_03505 PF03352 Methyladenine glycosylase LDL78_03505 PF00117 Glutamine amidotransferase class-I LDL78_03505 PF00958 GMP synthase C terminal domain LDL78_03505 PF13673 Acetyltransferase (GNAT) domain LDL78_03505 PF13302 Acetyltransferase (GNAT) domain LDL78_03525 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LDL78_03535 PF01613 Flavin reductase like domain LDL78_03540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL78_03540 PF00512 His Kinase A (phospho-acceptor) domain LDL78_03550 PF01230 HIT domain LDL78_03555 PF01272 Transcription elongation factor, GreA/GreB, C-term LDL78_03555 PF03449 Transcription elongation factor, N-terminal LDL78_03570 PF00512 His Kinase A (phospho-acceptor) domain LDL78_03570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL78_03570 PF09308 LuxQ, periplasmic LDL78_03570 PF00072 Response regulator receiver domain LDL78_03575 PF00072 Response regulator receiver domain LDL78_03575 PF00158 Sigma-54 interaction domain LDL78_03575 PF02954 Bacterial regulatory protein, Fis family LDL78_03585 PF03462 PCRF domain LDL78_03585 PF00472 RF-1 domain LDL78_03600 PF04973 Nicotinamide mononucleotide transporter LDL78_03610 PF01884 PcrB family LDL78_03620 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain LDL78_03620 PF05221 S-adenosyl-L-homocysteine hydrolase LDL78_03625 PF03852 DNA mismatch endonuclease Vsr LDL78_03625 PF04480 Protein of unknown function (DUF559) LDL78_03630 PF00155 Aminotransferase class I and II LDL78_03635 PF00141 Peroxidase LDL78_03645 PF00795 Carbon-nitrogen hydrolase LDL78_03655 PF00156 Phosphoribosyl transferase domain LDL78_03665 PF03129 Anticodon binding domain LDL78_03680 PF03372 Endonuclease/Exonuclease/phosphatase family LDL78_03685 PF00248 Aldo/keto reductase family LDL78_03690 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LDL78_03690 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LDL78_03690 PF02770 Acyl-CoA dehydrogenase, middle domain LDL78_03695 PF18073 Rubredoxin metal binding domain LDL78_03700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL78_03700 PF07730 Histidine kinase LDL78_03705 PF00196 Bacterial regulatory proteins, luxR family LDL78_03705 PF00072 Response regulator receiver domain LDL78_03720 PF02261 Aspartate decarboxylase LDL78_03725 PF02569 Pantoate-beta-alanine ligase LDL78_03730 PF00534 Glycosyl transferases group 1 LDL78_03730 PF08323 Starch synthase catalytic domain LDL78_03740 PF01380 SIS domain LDL78_03755 PF01063 Amino-transferase class IV LDL78_03760 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LDL78_03760 PF02874 ATP synthase alpha/beta family, beta-barrel domain LDL78_03765 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LDL78_03785 PF10150 Ribonuclease E/G family LDL78_03785 PF00575 S1 RNA binding domain LDL78_03790 PF00216 Bacterial DNA-binding protein LDL78_03795 PF14815 NUDIX domain LDL78_03795 PF00730 HhH-GPD superfamily base excision DNA repair protein LDL78_03795 PF00633 Helix-hairpin-helix motif LDL78_03800 PF00436 Single-strand binding protein family LDL78_03805 PF00571 CBS domain LDL78_03805 PF03471 Transporter associated domain LDL78_03820 PF00829 Ribosomal prokaryotic L21 protein LDL78_03825 PF01016 Ribosomal L27 protein LDL78_03835 PF00672 HAMP domain LDL78_03835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL78_03835 PF00512 His Kinase A (phospho-acceptor) domain LDL78_03835 PF01627 Hpt domain LDL78_03835 PF17149 Periplasmic sensor domain found in signal transduction proteins LDL78_03835 PF00072 Response regulator receiver domain LDL78_03840 PF13085 2Fe-2S iron-sulfur cluster binding domain LDL78_03850 PF00890 FAD binding domain LDL78_03850 PF02910 Fumarate reductase flavoprotein C-term LDL78_03885 PF01321 Creatinase/Prolidase N-terminal domain LDL78_03885 PF00557 Metallopeptidase family M24 LDL78_03890 PF08386 TAP-like protein LDL78_03890 PF00561 alpha/beta hydrolase fold LDL78_03900 PF00586 AIR synthase related protein, N-terminal domain LDL78_03900 PF02769 AIR synthase related protein, C-terminal domain LDL78_03920 PF03150 Di-haem cytochrome c peroxidase LDL78_03925 PF01521 Iron-sulphur cluster biosynthesis LDL78_03930 PF01458 Uncharacterized protein family (UPF0051) LDL78_03940 PF00005 ABC transporter LDL78_03945 PF01458 Uncharacterized protein family (UPF0051) LDL78_03950 PF00266 Aminotransferase class-V LDL78_03960 PF02657 Fe-S metabolism associated domain LDL78_03965 PF01883 Iron-sulfur cluster assembly protein LDL78_03980 PF16360 GTP-binding GTPase Middle Region LDL78_03980 PF13167 GTP-binding GTPase N-terminal LDL78_03980 PF01926 50S ribosome-binding GTPase LDL78_03995 PF01389 OmpA-like transmembrane domain LDL78_03995 PF00691 OmpA family LDL78_04020 PF07715 TonB-dependent Receptor Plug Domain LDL78_04020 PF00593 TonB dependent receptor LDL78_04025 PF08460 Bacterial SH3 domain LDL78_04025 PF01551 Peptidase family M23 LDL78_04035 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LDL78_04040 PF04209 homogentisate 1,2-dioxygenase LDL78_04045 PF00027 Cyclic nucleotide-binding domain LDL78_04045 PF01734 Patatin-like phospholipase LDL78_04050 PF01541 GIY-YIG catalytic domain LDL78_04050 PF02151 UvrB/uvrC motif LDL78_04050 PF08459 UvrC Helix-hairpin-helix N-terminal LDL78_04060 PF00593 TonB dependent receptor LDL78_04060 PF07715 TonB-dependent Receptor Plug Domain LDL78_04065 PF08443 RimK-like ATP-grasp domain LDL78_04065 PF18030 RimK PreATP-grasp domain LDL78_04070 PF08443 RimK-like ATP-grasp domain LDL78_04070 PF18030 RimK PreATP-grasp domain LDL78_04075 PF08443 RimK-like ATP-grasp domain LDL78_04075 PF18030 RimK PreATP-grasp domain LDL78_04085 PF01812 5-formyltetrahydrofolate cyclo-ligase family LDL78_04100 PF01252 Signal peptidase (SPase) II LDL78_04110 PF00133 tRNA synthetases class I (I, L, M and V) LDL78_04110 PF08264 Anticodon-binding domain of tRNA LDL78_04115 PF11412 Disulphide bond corrector protein DsbC LDL78_04115 PF02683 Cytochrome C biogenesis protein transmembrane region LDL78_04115 PF00085 Thioredoxin LDL78_04170 PF03601 Conserved hypothetical protein 698 LDL78_04175 PF05552 Conserved TM helix LDL78_04175 PF00924 Mechanosensitive ion channel LDL78_04225 PF07995 Glucose / Sorbosone dehydrogenase LDL78_04230 PF00171 Aldehyde dehydrogenase family LDL78_04235 PF00583 Acetyltransferase (GNAT) family LDL78_04240 PF02565 Recombination protein O C terminal LDL78_04240 PF11967 Recombination protein O N terminal LDL78_04250 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LDL78_04250 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LDL78_04260 PF12368 Rhodanase C-terminal LDL78_04260 PF17773 UPF0176 acylphosphatase like domain LDL78_04260 PF00581 Rhodanese-like domain LDL78_04265 PF04468 PSP1 C-terminal conserved region LDL78_04270 PF14109 GldH lipoprotein LDL78_04275 PF00912 Transglycosylase LDL78_04275 PF00905 Penicillin binding protein transpeptidase domain LDL78_04280 PF01144 Coenzyme A transferase LDL78_04285 PF01144 Coenzyme A transferase LDL78_04290 PF00005 ABC transporter LDL78_04290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDL78_04295 PF03413 Peptidase propeptide and YPEB domain LDL78_04295 PF07504 Fungalysin/Thermolysin Propeptide Motif LDL78_04295 PF01447 Thermolysin metallopeptidase, catalytic domain LDL78_04295 PF02868 Thermolysin metallopeptidase, alpha-helical domain LDL78_04315 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LDL78_04315 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LDL78_04320 PF00571 CBS domain LDL78_04320 PF01595 Cyclin M transmembrane N-terminal domain LDL78_04335 PF00490 Delta-aminolevulinic acid dehydratase LDL78_04345 PF01218 Coproporphyrinogen III oxidase LDL78_04365 PF01208 Uroporphyrinogen decarboxylase (URO-D) LDL78_04370 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LDL78_04370 PF02602 Uroporphyrinogen-III synthase HemD LDL78_04375 PF02080 TrkA-C domain LDL78_04375 PF02254 TrkA-N domain LDL78_04380 PF02386 Cation transport protein LDL78_04385 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LDL78_04385 PF03900 Porphobilinogen deaminase, C-terminal domain LDL78_04390 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LDL78_04390 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LDL78_04390 PF01488 Shikimate / quinate 5-dehydrogenase LDL78_04405 PF00762 Ferrochelatase LDL78_04420 PF03653 Uncharacterised protein family (UPF0093) LDL78_04425 PF00672 HAMP domain LDL78_04425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL78_04425 PF00512 His Kinase A (phospho-acceptor) domain LDL78_04430 PF00378 Enoyl-CoA hydratase/isomerase LDL78_04435 PF00011 Hsp20/alpha crystallin family LDL78_04445 PF04055 Radical SAM superfamily LDL78_04450 PF01966 HD domain LDL78_04465 PF06491 Disulphide isomerase LDL78_04470 PF00226 DnaJ domain LDL78_04470 PF01556 DnaJ C terminal domain LDL78_04470 PF00684 DnaJ central domain LDL78_04475 PF00950 ABC 3 transport family LDL78_04475 PF02742 Iron dependent repressor, metal binding and dimerisation domain LDL78_04480 PF01297 Zinc-uptake complex component A periplasmic LDL78_04485 PF00005 ABC transporter LDL78_04490 PF00950 ABC 3 transport family LDL78_04495 PF00950 ABC 3 transport family LDL78_04505 PF07670 Nucleoside recognition LDL78_04505 PF02421 Ferrous iron transport protein B LDL78_04505 PF07664 Ferrous iron transport protein B C terminus LDL78_04515 PF02630 SCO1/SenC LDL78_04520 PF01433 Peptidase family M1 domain LDL78_04520 PF11838 ERAP1-like C-terminal domain LDL78_04525 PF02163 Peptidase family M50 LDL78_04525 PF17820 PDZ domain LDL78_04560 PF01370 NAD dependent epimerase/dehydratase family LDL78_04570 PF05649 Peptidase family M13 LDL78_04570 PF01431 Peptidase family M13 LDL78_04585 PF00571 CBS domain LDL78_04585 PF00478 IMP dehydrogenase / GMP reductase domain LDL78_04590 PF06736 Protein of unknown function (DUF1211) LDL78_04595 PF00436 Single-strand binding protein family LDL78_04600 PF00270 DEAD/DEAH box helicase LDL78_04600 PF16124 RecQ zinc-binding LDL78_04600 PF09382 RQC domain LDL78_04600 PF00271 Helicase conserved C-terminal domain LDL78_04600 PF00570 HRDC domain LDL78_04615 PF17674 HHH domain LDL78_04615 PF00575 S1 RNA binding domain LDL78_04615 PF09371 Tex-like protein N-terminal domain LDL78_04615 PF16921 Tex protein YqgF-like domain LDL78_04625 PF08264 Anticodon-binding domain of tRNA LDL78_04625 PF09334 tRNA synthetases class I (M) LDL78_04625 PF01588 Putative tRNA binding domain LDL78_04630 PF02016 LD-carboxypeptidase N-terminal domain LDL78_04630 PF17676 LD-carboxypeptidase C-terminal domain LDL78_04635 PF02021 Uncharacterised protein family UPF0102 LDL78_04645 PF17757 UvrB interaction domain LDL78_04645 PF03461 TRCF domain LDL78_04645 PF00271 Helicase conserved C-terminal domain LDL78_04645 PF00270 DEAD/DEAH box helicase LDL78_04645 PF02559 CarD-like/TRCF domain LDL78_04650 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LDL78_04665 PF00270 DEAD/DEAH box helicase LDL78_04665 PF08494 DEAD/H associated LDL78_04665 PF00271 Helicase conserved C-terminal domain LDL78_04670 PF04675 DNA ligase N terminus LDL78_04670 PF04679 ATP dependent DNA ligase C terminal region LDL78_04670 PF01068 ATP dependent DNA ligase domain LDL78_04685 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LDL78_04695 PF01842 ACT domain LDL78_04695 PF00696 Amino acid kinase family LDL78_04725 PF12681 Glyoxalase-like domain LDL78_04730 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LDL78_04730 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LDL78_04745 PF00231 ATP synthase LDL78_04750 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LDL78_04750 PF00306 ATP synthase alpha/beta chain, C terminal domain LDL78_04750 PF02874 ATP synthase alpha/beta family, beta-barrel domain LDL78_04755 PF00213 ATP synthase delta (OSCP) subunit LDL78_04760 PF00430 ATP synthase B/B' CF(0) LDL78_04765 PF00137 ATP synthase subunit C LDL78_04770 PF00119 ATP synthase A chain LDL78_04795 PF00175 Oxidoreductase NAD-binding domain LDL78_04795 PF00111 2Fe-2S iron-sulfur cluster binding domain LDL78_04795 PF00970 Oxidoreductase FAD-binding domain LDL78_04810 PF02086 D12 class N6 adenine-specific DNA methyltransferase LDL78_04830 PF02843 Phosphoribosylglycinamide synthetase, C domain LDL78_04830 PF02844 Phosphoribosylglycinamide synthetase, N domain LDL78_04830 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LDL78_04840 PF02350 UDP-N-acetylglucosamine 2-epimerase LDL78_04850 PF02397 Bacterial sugar transferase LDL78_04855 PF01370 NAD dependent epimerase/dehydratase family LDL78_04860 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LDL78_04860 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LDL78_04860 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LDL78_04900 PF03102 NeuB family LDL78_04900 PF08666 SAF domain LDL78_04915 PF04321 RmlD substrate binding domain LDL78_04920 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LDL78_04925 PF00483 Nucleotidyl transferase LDL78_04930 PF16363 GDP-mannose 4,6 dehydratase LDL78_04945 PF01476 LysM domain LDL78_04945 PF01551 Peptidase family M23 LDL78_04950 PF02416 mttA/Hcf106 family LDL78_04960 PF01476 LysM domain LDL78_04960 PF00877 NlpC/P60 family LDL78_04965 PF00162 Phosphoglycerate kinase LDL78_04980 PF01134 Glucose inhibited division protein A LDL78_04980 PF13932 GidA associated domain LDL78_04985 PF02130 Uncharacterized protein family UPF0054 LDL78_04995 PF00749 tRNA synthetases class I (E and Q), catalytic domain LDL78_05025 PF00749 tRNA synthetases class I (E and Q), catalytic domain LDL78_05025 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LDL78_05030 PF02152 Dihydroneopterin aldolase LDL78_05055 PF17876 Cold shock domain LDL78_05055 PF08206 Ribonuclease B OB domain LDL78_05055 PF00773 RNB domain LDL78_05055 PF00575 S1 RNA binding domain LDL78_05065 PF02502 Ribose/Galactose Isomerase LDL78_05070 PF01545 Cation efflux family LDL78_05070 PF16916 Dimerisation domain of Zinc Transporter LDL78_05075 PF13673 Acetyltransferase (GNAT) domain LDL78_05085 PF04116 Fatty acid hydroxylase superfamily LDL78_05095 PF13180 PDZ domain LDL78_05095 PF03572 Peptidase family S41 LDL78_05105 PF00825 Ribonuclease P LDL78_05115 PF00082 Subtilase family LDL78_05120 PF00753 Metallo-beta-lactamase superfamily LDL78_05125 PF03471 Transporter associated domain LDL78_05125 PF00999 Sodium/hydrogen exchanger family LDL78_05125 PF02080 TrkA-C domain LDL78_05135 PF00679 Elongation factor G C-terminus LDL78_05135 PF00009 Elongation factor Tu GTP binding domain LDL78_05135 PF03144 Elongation factor Tu domain 2 LDL78_05135 PF06421 GTP-binding protein LepA C-terminus LDL78_05145 PF01207 Dihydrouridine synthase (Dus) LDL78_05150 PF02687 FtsX-like permease family LDL78_05150 PF12704 MacB-like periplasmic core domain LDL78_05155 PF02033 Ribosome-binding factor A LDL78_05175 PF00677 Lumazine binding domain LDL78_05180 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LDL78_05190 PF01783 Ribosomal L32p protein family LDL78_05195 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LDL78_05195 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LDL78_05200 PF00364 Biotin-requiring enzyme LDL78_05205 PF02785 Biotin carboxylase C-terminal domain LDL78_05205 PF00289 Biotin carboxylase, N-terminal domain LDL78_05205 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LDL78_05215 PF00912 Transglycosylase LDL78_05230 PF12805 FUSC-like inner membrane protein yccS LDL78_05235 PF16884 N-terminal domain of oxidoreductase LDL78_05235 PF00107 Zinc-binding dehydrogenase LDL78_05240 PF00005 ABC transporter LDL78_05240 PF08402 TOBE domain LDL78_05255 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LDL78_05255 PF01409 tRNA synthetases class II core domain (F) LDL78_05270 PF01740 STAS domain LDL78_05270 PF00916 Sulfate permease family LDL78_05275 PF00484 Carbonic anhydrase LDL78_05280 PF01740 STAS domain LDL78_05280 PF00916 Sulfate permease family LDL78_05305 PF13519 von Willebrand factor type A domain LDL78_05305 PF07584 Aerotolerance regulator N-terminal LDL78_05310 PF07584 Aerotolerance regulator N-terminal LDL78_05310 PF13519 von Willebrand factor type A domain LDL78_05320 PF01882 Protein of unknown function DUF58 LDL78_05325 PF07726 ATPase family associated with various cellular activities (AAA) LDL78_05325 PF17863 AAA lid domain LDL78_05335 PF00106 short chain dehydrogenase LDL78_05345 PF00149 Calcineurin-like phosphoesterase LDL78_05355 PF00171 Aldehyde dehydrogenase family LDL78_05360 PF06052 3-hydroxyanthranilic acid dioxygenase LDL78_05370 PF01112 Asparaginase LDL78_05385 PF00912 Transglycosylase LDL78_05385 PF00905 Penicillin binding protein transpeptidase domain LDL78_05385 PF06832 Penicillin-Binding Protein C-terminus Family LDL78_05395 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDL78_05400 PF00873 AcrB/AcrD/AcrF family LDL78_05405 PF02321 Outer membrane efflux protein LDL78_05415 PF01928 CYTH domain LDL78_05425 PF00817 impB/mucB/samB family LDL78_05425 PF11799 impB/mucB/samB family C-terminal domain LDL78_05435 PF00224 Pyruvate kinase, barrel domain LDL78_05435 PF02887 Pyruvate kinase, alpha/beta domain LDL78_05435 PF00391 PEP-utilising enzyme, mobile domain LDL78_05445 PF00035 Double-stranded RNA binding motif LDL78_05445 PF14622 Ribonuclease-III-like LDL78_05450 PF00109 Beta-ketoacyl synthase, N-terminal domain LDL78_05450 PF02801 Beta-ketoacyl synthase, C-terminal domain LDL78_05455 PF00550 Phosphopantetheine attachment site LDL78_05460 PF00551 Formyl transferase LDL78_05465 PF01693 Caulimovirus viroplasmin LDL78_05475 PF00294 pfkB family carbohydrate kinase LDL78_05480 PF00156 Phosphoribosyl transferase domain LDL78_05485 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LDL78_05485 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LDL78_05490 PF12705 PD-(D/E)XK nuclease superfamily LDL78_05490 PF00580 UvrD/REP helicase N-terminal domain LDL78_05490 PF13361 UvrD-like helicase C-terminal domain LDL78_05495 PF00155 Aminotransferase class I and II LDL78_05500 PF00691 OmpA family LDL78_05500 PF00223 Photosystem I psaA/psaB protein LDL78_05535 PF01242 6-pyruvoyl tetrahydropterin synthase LDL78_05540 PF00149 Calcineurin-like phosphoesterase LDL78_05545 PF02272 DHHA1 domain LDL78_05545 PF10141 Single-strand DNA-specific exonuclease, C terminal domain LDL78_05545 PF17768 RecJ OB domain LDL78_05545 PF01368 DHH family LDL78_05565 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LDL78_05580 PF00265 Thymidine kinase LDL78_05585 PF00842 Alanine racemase, C-terminal domain LDL78_05585 PF01168 Alanine racemase, N-terminal domain LDL78_05590 PF01741 Large-conductance mechanosensitive channel, MscL LDL78_05595 PF02774 Semialdehyde dehydrogenase, dimerisation domain LDL78_05595 PF01118 Semialdehyde dehydrogenase, NAD binding domain LDL78_05605 PF00326 Prolyl oligopeptidase family LDL78_05605 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LDL78_05610 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LDL78_05610 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LDL78_05615 PF01467 Cytidylyltransferase-like LDL78_05620 PF00625 Guanylate kinase LDL78_05625 PF08340 Domain of unknown function (DUF1732) LDL78_05625 PF03755 YicC-like family, N-terminal region LDL78_05630 PF00561 alpha/beta hydrolase fold LDL78_05640 PF00892 EamA-like transporter family LDL78_05655 PF01053 Cys/Met metabolism PLP-dependent enzyme LDL78_05680 PF00154 recA bacterial DNA recombination protein LDL78_05700 PF00579 tRNA synthetases class I (W and Y) LDL78_05705 PF17782 DprA winged helix domain LDL78_05705 PF02481 DNA recombination-mediator protein A LDL78_05715 PF03061 Thioesterase superfamily LDL78_05720 PF06280 Fn3-like domain LDL78_05720 PF02225 PA domain LDL78_05720 PF00082 Subtilase family LDL78_05740 PF00483 Nucleotidyl transferase LDL78_05745 PF00692 dUTPase LDL78_05760 PF00571 CBS domain LDL78_05760 PF03448 MgtE intracellular N domain LDL78_05760 PF01769 Divalent cation transporter LDL78_05765 PF00398 Ribosomal RNA adenine dimethylase LDL78_05795 PF01914 MarC family integral membrane protein LDL78_05805 PF03572 Peptidase family S41 LDL78_05805 PF13180 PDZ domain LDL78_05880 PF10544 T5orf172 domain LDL78_05910 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LDL78_05910 PF14572 Phosphoribosyl synthetase-associated domain LDL78_05915 PF14693 Ribosomal protein TL5, C-terminal domain LDL78_05915 PF01386 Ribosomal L25p family LDL78_05920 PF01195 Peptidyl-tRNA hydrolase LDL78_05925 PF01687 Riboflavin kinase LDL78_05925 PF06574 FAD synthetase LDL78_05935 PF02403 Seryl-tRNA synthetase N-terminal domain LDL78_05935 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LDL78_05945 PF00317 Ribonucleotide reductase, all-alpha domain LDL78_05945 PF02867 Ribonucleotide reductase, barrel domain LDL78_05945 PF03477 ATP cone domain LDL78_05990 PF01966 HD domain LDL78_05990 PF13286 Phosphohydrolase-associated domain LDL78_06000 PF02780 Transketolase, C-terminal domain LDL78_06000 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LDL78_06000 PF02779 Transketolase, pyrimidine binding domain LDL78_06005 PF14437 MafB19-like deaminase LDL78_06010 PF00313 'Cold-shock' DNA-binding domain LDL78_06020 PF00654 Voltage gated chloride channel LDL78_06025 PF02938 GAD domain LDL78_06025 PF00152 tRNA synthetases class II (D, K and N) LDL78_06025 PF01336 OB-fold nucleic acid binding domain LDL78_06030 PF00873 AcrB/AcrD/AcrF family LDL78_06035 PF00529 HlyD membrane-fusion protein of T1SS LDL78_06035 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDL78_06050 PF00348 Polyprenyl synthetase LDL78_06055 PF02779 Transketolase, pyrimidine binding domain LDL78_06055 PF16870 2-oxoglutarate dehydrogenase C-terminal LDL78_06055 PF00676 Dehydrogenase E1 component LDL78_06055 PF16078 2-oxoglutarate dehydrogenase N-terminus LDL78_06060 PF02817 e3 binding domain LDL78_06060 PF00364 Biotin-requiring enzyme LDL78_06060 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LDL78_06065 PF00196 Bacterial regulatory proteins, luxR family LDL78_06065 PF00072 Response regulator receiver domain LDL78_06070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL78_06070 PF07730 Histidine kinase LDL78_06080 PF01026 TatD related DNase LDL78_06085 PF17763 Glutaminase/Asparaginase C-terminal domain LDL78_06085 PF00710 Asparaginase, N-terminal LDL78_06095 PF01618 MotA/TolQ/ExbB proton channel family LDL78_06125 PF00309 Sigma-54 factor, Activator interacting domain (AID) LDL78_06125 PF04963 Sigma-54 factor, core binding domain LDL78_06125 PF04552 Sigma-54, DNA binding domain LDL78_06130 PF00152 tRNA synthetases class II (D, K and N) LDL78_06130 PF01336 OB-fold nucleic acid binding domain LDL78_06155 PF01765 Ribosome recycling factor LDL78_06160 PF00696 Amino acid kinase family LDL78_06170 PF00889 Elongation factor TS LDL78_06175 PF00318 Ribosomal protein S2 LDL78_06180 PF00380 Ribosomal protein S9/S16 LDL78_06185 PF00572 Ribosomal protein L13 LDL78_06195 PF01367 5'-3' exonuclease, C-terminal SAM fold LDL78_06195 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LDL78_06195 PF00476 DNA polymerase family A LDL78_06195 PF01612 3'-5' exonuclease LDL78_06200 PF01112 Asparaginase LDL78_06205 PF03575 Peptidase family S51 LDL78_06210 PF02875 Mur ligase family, glutamate ligase domain LDL78_06210 PF08443 RimK-like ATP-grasp domain LDL78_06210 PF08245 Mur ligase middle domain LDL78_06220 PF00085 Thioredoxin LDL78_06230 PF01522 Polysaccharide deacetylase LDL78_06255 PF01494 FAD binding domain LDL78_06260 PF00221 Aromatic amino acid lyase LDL78_06275 PF02801 Beta-ketoacyl synthase, C-terminal domain LDL78_06275 PF00109 Beta-ketoacyl synthase, N-terminal domain LDL78_06280 PF00550 Phosphopantetheine attachment site LDL78_06295 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LDL78_06295 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LDL78_06300 PF07977 FabA-like domain LDL78_06320 PF00005 ABC transporter LDL78_06335 PF02801 Beta-ketoacyl synthase, C-terminal domain LDL78_06335 PF00109 Beta-ketoacyl synthase, N-terminal domain LDL78_06350 PF00550 Phosphopantetheine attachment site LDL78_06355 PF00109 Beta-ketoacyl synthase, N-terminal domain LDL78_06355 PF02801 Beta-ketoacyl synthase, C-terminal domain LDL78_06365 PF01522 Polysaccharide deacetylase LDL78_06380 PF07977 FabA-like domain LDL78_06400 PF03275 UDP-galactopyranose mutase LDL78_06415 PF00501 AMP-binding enzyme LDL78_06415 PF14535 AMP-binding enzyme C-terminal domain LDL78_06425 PF00582 Universal stress protein family LDL78_06430 PF02576 RimP N-terminal domain LDL78_06435 PF13184 NusA-like KH domain LDL78_06435 PF08529 NusA N-terminal domain LDL78_06435 PF00575 S1 RNA binding domain LDL78_06440 PF00009 Elongation factor Tu GTP binding domain LDL78_06440 PF11987 Translation-initiation factor 2 LDL78_06440 PF04760 Translation initiation factor IF-2, N-terminal region LDL78_06450 PF00034 Cytochrome c LDL78_06455 PF00037 4Fe-4S binding domain LDL78_06455 PF13247 4Fe-4S dicluster domain LDL78_06460 PF00318 Ribosomal protein S2 LDL78_06480 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LDL78_06480 PF06481 COX Aromatic Rich Motif LDL78_06485 PF00115 Cytochrome C and Quinol oxidase polypeptide I LDL78_06490 PF05491 RuvB C-terminal winged helix domain LDL78_06490 PF05496 Holliday junction DNA helicase RuvB P-loop domain LDL78_06490 PF17864 RuvB AAA lid domain LDL78_06495 PF00067 Cytochrome P450 LDL78_06500 PF08331 Domain of unknown function (DUF1730) LDL78_06505 PF00390 Malic enzyme, N-terminal domain LDL78_06505 PF03949 Malic enzyme, NAD binding domain LDL78_06505 PF01515 Phosphate acetyl/butaryl transferase LDL78_06510 PF07499 RuvA, C-terminal domain LDL78_06510 PF01330 RuvA N terminal domain LDL78_06520 PF01597 Glycine cleavage H-protein LDL78_06550 PF01040 UbiA prenyltransferase family LDL78_06555 PF00510 Cytochrome c oxidase subunit III LDL78_06560 PF00510 Cytochrome c oxidase subunit III LDL78_06575 PF02630 SCO1/SenC LDL78_06580 PF04238 Protein of unknown function (DUF420) LDL78_06590 PF00005 ABC transporter LDL78_06595 PF12704 MacB-like periplasmic core domain LDL78_06595 PF02687 FtsX-like permease family LDL78_06595 PF00005 ABC transporter LDL78_06600 PF00005 ABC transporter LDL78_06600 PF02687 FtsX-like permease family LDL78_06600 PF12704 MacB-like periplasmic core domain LDL78_06610 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDL78_06625 PF00814 Glycoprotease family LDL78_06635 PF00924 Mechanosensitive ion channel LDL78_06635 PF05552 Conserved TM helix LDL78_06640 PF03190 Protein of unknown function, DUF255 LDL78_06650 PF01106 NifU-like domain LDL78_06675 PF07694 5TMR of 5TMR-LYT LDL78_06675 PF13492 GAF domain LDL78_06675 PF06580 Histidine kinase LDL78_06675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL78_06680 PF00072 Response regulator receiver domain LDL78_06680 PF04397 LytTr DNA-binding domain LDL78_06685 PF00132 Bacterial transferase hexapeptide (six repeats) LDL78_06690 PF01177 Asp/Glu/Hydantoin racemase LDL78_06710 PF01255 Putative undecaprenyl diphosphate synthase LDL78_06720 PF01513 ATP-NAD kinase LDL78_06730 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LDL78_06735 PF12697 Alpha/beta hydrolase family LDL78_06750 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV LDL78_06755 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LDL78_06755 PF05698 Bacterial trigger factor protein (TF) C-terminus LDL78_06755 PF05697 Bacterial trigger factor protein (TF) LDL78_06760 PF00574 Clp protease LDL78_06765 PF06689 ClpX C4-type zinc finger LDL78_06765 PF10431 C-terminal, D2-small domain, of ClpB protein LDL78_06765 PF07724 AAA domain (Cdc48 subfamily) LDL78_06785 PF01712 Deoxynucleoside kinase LDL78_06790 PF01479 S4 domain LDL78_06790 PF00849 RNA pseudouridylate synthase LDL78_06800 PF00491 Arginase family LDL78_06805 PF01916 Deoxyhypusine synthase LDL78_06810 PF00795 Carbon-nitrogen hydrolase LDL78_06810 PF00583 Acetyltransferase (GNAT) family LDL78_06825 PF02163 Peptidase family M50 LDL78_06825 PF13180 PDZ domain LDL78_06830 PF00118 TCP-1/cpn60 chaperonin family LDL78_06835 PF00166 Chaperonin 10 Kd subunit LDL78_06855 PF00158 Sigma-54 interaction domain LDL78_06860 PF00919 Uncharacterized protein family UPF0004 LDL78_06860 PF01938 TRAM domain LDL78_06860 PF04055 Radical SAM superfamily LDL78_06865 PF00719 Inorganic pyrophosphatase LDL78_06870 PF01131 DNA topoisomerase LDL78_06870 PF01751 Toprim domain LDL78_06870 PF13368 Topoisomerase C-terminal repeat LDL78_06880 PF03781 Sulfatase-modifying factor enzyme 1 LDL78_06900 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LDL78_06900 PF01266 FAD dependent oxidoreductase LDL78_06910 PF00005 ABC transporter LDL78_06910 PF16326 ABC transporter C-terminal domain LDL78_06910 PF12848 ABC transporter LDL78_06915 PF01734 Patatin-like phospholipase LDL78_06955 PF08274 PhnA Zinc-Ribbon LDL78_06955 PF03831 PhnA domain LDL78_06960 PF00211 Adenylate and Guanylate cyclase catalytic domain LDL78_06965 PF00211 Adenylate and Guanylate cyclase catalytic domain LDL78_06990 PF02195 ParB-like nuclease domain LDL78_06990 PF17762 HTH domain found in ParB protein LDL78_07035 PF00436 Single-strand binding protein family LDL78_07040 PF00436 Single-strand binding protein family LDL78_07070 PF17862 AAA+ lid domain LDL78_07070 PF00004 ATPase family associated with various cellular activities (AAA) LDL78_07070 PF01434 Peptidase family M41 LDL78_07140 PF01022 Bacterial regulatory protein, arsR family LDL78_07155 PF00004 ATPase family associated with various cellular activities (AAA) LDL78_07185 PF07690 Major Facilitator Superfamily LDL78_07205 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LDL78_07205 PF14572 Phosphoribosyl synthetase-associated domain LDL78_07210 PF02885 Glycosyl transferase family, helical bundle domain LDL78_07210 PF00591 Glycosyl transferase family, a/b domain LDL78_07210 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain LDL78_07215 PF00753 Metallo-beta-lactamase superfamily LDL78_07215 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain LDL78_07215 PF10996 Beta-Casp domain LDL78_07235 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LDL78_07235 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LDL78_07240 PF13194 Domain of unknown function (DUF4010) LDL78_07245 PF00365 Phosphofructokinase LDL78_07250 PF12697 Alpha/beta hydrolase family LDL78_07255 PF01791 DeoC/LacD family aldolase LDL78_07270 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDL78_07335 PF00873 AcrB/AcrD/AcrF family LDL78_07345 PF07732 Multicopper oxidase LDL78_07345 PF07731 Multicopper oxidase LDL78_07345 PF00394 Multicopper oxidase LDL78_07365 PF03773 Predicted permease LDL78_07380 PF13533 Biotin-lipoyl like LDL78_07395 PF00873 AcrB/AcrD/AcrF family LDL78_07400 PF00529 HlyD membrane-fusion protein of T1SS LDL78_07400 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDL78_07405 PF00543 Nitrogen regulatory protein P-II LDL78_07420 PF00403 Heavy-metal-associated domain LDL78_07425 PF00403 Heavy-metal-associated domain LDL78_07455 PF00282 Pyridoxal-dependent decarboxylase conserved domain LDL78_07485 PF00005 ABC transporter LDL78_07490 PF01032 FecCD transport family LDL78_07495 PF01497 Periplasmic binding protein LDL78_07500 PF00593 TonB dependent receptor LDL78_07500 PF07715 TonB-dependent Receptor Plug Domain LDL78_07500 PF07660 Secretin and TonB N terminus short domain LDL78_07510 PF00694 Aconitase C-terminal domain LDL78_07510 PF00330 Aconitase family (aconitate hydratase) LDL78_07520 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LDL78_07525 PF00296 Luciferase-like monooxygenase LDL78_07530 PF12706 Beta-lactamase superfamily domain LDL78_07535 PF13419 Haloacid dehalogenase-like hydrolase LDL78_07545 PF01578 Cytochrome C assembly protein LDL78_07545 PF05140 ResB-like family LDL78_07580 PF07733 Bacterial DNA polymerase III alpha NTPase domain LDL78_07580 PF11490 DNA polymerase III polC-type N-terminus II LDL78_07580 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LDL78_07580 PF14579 Helix-hairpin-helix motif LDL78_07580 PF02811 PHP domain LDL78_07580 PF00929 Exonuclease LDL78_07580 PF01336 OB-fold nucleic acid binding domain LDL78_07640 PF07715 TonB-dependent Receptor Plug Domain LDL78_07640 PF00593 TonB dependent receptor LDL78_07650 PF07693 KAP family P-loop domain LDL78_07665 PF01026 TatD related DNase LDL78_07700 PF00145 C-5 cytosine-specific DNA methylase LDL78_07705 PF09561 HpaII restriction endonuclease LDL78_07710 PF00440 Bacterial regulatory proteins, tetR family LDL78_07720 PF00892 EamA-like transporter family LDL78_07735 PF12867 DinB superfamily LDL78_07760 PF00144 Beta-lactamase LDL78_07770 PF04397 LytTr DNA-binding domain LDL78_07770 PF00072 Response regulator receiver domain LDL78_07775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL78_07775 PF06580 Histidine kinase LDL78_07775 PF07694 5TMR of 5TMR-LYT LDL78_07785 PF05195 Aminopeptidase P, N-terminal domain LDL78_07785 PF00557 Metallopeptidase family M24 LDL78_07825 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH LDL78_07850 PF13276 HTH-like domain LDL78_07850 PF00665 Integrase core domain LDL78_07850 PF13333 Integrase core domain LDL78_07860 PF01872 RibD C-terminal domain LDL78_07895 PF00881 Nitroreductase family LDL78_07935 PF13673 Acetyltransferase (GNAT) domain LDL78_07950 PF00005 ABC transporter LDL78_07950 PF13732 Domain of unknown function (DUF4162) LDL78_07955 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase LDL78_07970 PF00072 Response regulator receiver domain LDL78_07970 PF04397 LytTr DNA-binding domain LDL78_07975 PF07694 5TMR of 5TMR-LYT LDL78_07975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL78_07975 PF06580 Histidine kinase LDL78_07995 PF01590 GAF domain LDL78_07995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL78_07995 PF08446 PAS fold LDL78_07995 PF00360 Phytochrome region LDL78_07995 PF00512 His Kinase A (phospho-acceptor) domain LDL78_08000 PF01339 CheB methylesterase LDL78_08000 PF00072 Response regulator receiver domain LDL78_08020 PF02805 Metal binding domain of Ada LDL78_08020 PF12833 Helix-turn-helix domain LDL78_08035 PF08279 HTH domain LDL78_08035 PF13280 WYL domain LDL78_08040 PF01554 MatE LDL78_08045 PF00719 Inorganic pyrophosphatase LDL78_08050 PF03030 Inorganic H+ pyrophosphatase LDL78_08055 PF13194 Domain of unknown function (DUF4010) LDL78_08065 PF02503 Polyphosphate kinase middle domain LDL78_08065 PF13090 Polyphosphate kinase C-terminal domain 2 LDL78_08065 PF17941 Polyphosphate kinase C-terminal domain 1 LDL78_08065 PF13089 Polyphosphate kinase N-terminal domain LDL78_08070 PF01712 Deoxynucleoside kinase LDL78_08105 PF00351 Biopterin-dependent aromatic amino acid hydroxylase LDL78_08115 PF00970 Oxidoreductase FAD-binding domain LDL78_08115 PF00175 Oxidoreductase NAD-binding domain LDL78_08115 PF00111 2Fe-2S iron-sulfur cluster binding domain LDL78_08120 PF05138 Phenylacetic acid catabolic protein LDL78_08130 PF06243 Phenylacetic acid degradation B LDL78_08140 PF05138 Phenylacetic acid catabolic protein LDL78_08145 PF01883 Iron-sulfur cluster assembly protein LDL78_08150 PF00378 Enoyl-CoA hydratase/isomerase LDL78_08155 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LDL78_08155 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LDL78_08155 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain LDL78_08170 PF04228 Putative neutral zinc metallopeptidase LDL78_08175 PF00108 Thiolase, N-terminal domain LDL78_08175 PF02803 Thiolase, C-terminal domain LDL78_08180 PF01575 MaoC like domain LDL78_08180 PF00171 Aldehyde dehydrogenase family LDL78_08195 PF00132 Bacterial transferase hexapeptide (six repeats) LDL78_08200 PF02817 e3 binding domain LDL78_08200 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LDL78_08200 PF00364 Biotin-requiring enzyme LDL78_08205 PF02779 Transketolase, pyrimidine binding domain LDL78_08205 PF02780 Transketolase, C-terminal domain LDL78_08225 PF01175 Urocanase Rossmann-like domain LDL78_08225 PF17391 Urocanase N-terminal domain LDL78_08225 PF17392 Urocanase C-terminal domain LDL78_08235 PF01926 50S ribosome-binding GTPase LDL78_08235 PF07650 KH domain LDL78_08245 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LDL78_08245 PF01926 50S ribosome-binding GTPase LDL78_08265 PF04011 LemA family LDL78_08275 PF08460 Bacterial SH3 domain LDL78_08275 PF01551 Peptidase family M23 LDL78_08280 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LDL78_08280 PF02272 DHHA1 domain LDL78_08280 PF01411 tRNA synthetases class II (A) LDL78_08300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL78_08300 PF07730 Histidine kinase LDL78_08305 PF00196 Bacterial regulatory proteins, luxR family LDL78_08305 PF00072 Response regulator receiver domain LDL78_08310 PF02773 S-adenosylmethionine synthetase, C-terminal domain LDL78_08310 PF02772 S-adenosylmethionine synthetase, central domain LDL78_08310 PF00438 S-adenosylmethionine synthetase, N-terminal domain LDL78_08315 PF01053 Cys/Met metabolism PLP-dependent enzyme LDL78_08330 PF02310 B12 binding domain LDL78_08330 PF00809 Pterin binding enzyme LDL78_08330 PF02965 Vitamin B12 dependent methionine synthase, activation domain LDL78_08330 PF02574 Homocysteine S-methyltransferase LDL78_08330 PF02607 B12 binding domain LDL78_08335 PF00291 Pyridoxal-phosphate dependent enzyme LDL78_08340 PF02310 B12 binding domain LDL78_08340 PF02607 B12 binding domain LDL78_08340 PF02965 Vitamin B12 dependent methionine synthase, activation domain LDL78_08340 PF00809 Pterin binding enzyme LDL78_08340 PF02574 Homocysteine S-methyltransferase LDL78_08345 PF02219 Methylenetetrahydrofolate reductase LDL78_08370 PF00005 ABC transporter LDL78_08375 PF18152 DAHP synthase ferredoxin-like domain LDL78_08375 PF00793 DAHP synthetase I family LDL78_08385 PF03193 RsgA GTPase LDL78_08385 PF16745 RsgA N-terminal domain LDL78_08390 PF02580 D-Tyr-tRNA(Tyr) deacylase LDL78_08405 PF03819 MazG nucleotide pyrophosphohydrolase domain LDL78_08415 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LDL78_08420 PF02547 Queuosine biosynthesis protein LDL78_08425 PF01483 Proprotein convertase P-domain LDL78_08430 PF04055 Radical SAM superfamily LDL78_08435 PF08126 Propeptide_C25 LDL78_08435 PF07675 Cleaved Adhesin Domain LDL78_08435 PF01364 Peptidase family C25 LDL78_08435 PF03785 Peptidase family C25, C terminal ig-like domain LDL78_08435 PF10365 Domain of unknown function (DUF2436) LDL78_08440 PF00348 Polyprenyl synthetase LDL78_08460 PF08275 DNA primase catalytic core, N-terminal domain LDL78_08460 PF10410 DnaB-helicase binding domain of primase LDL78_08460 PF01807 CHC2 zinc finger LDL78_08465 PF00196 Bacterial regulatory proteins, luxR family LDL78_08465 PF00072 Response regulator receiver domain LDL78_08470 PF02540 NAD synthase LDL78_08485 PF01926 50S ribosome-binding GTPase LDL78_08490 PF00561 alpha/beta hydrolase fold LDL78_08495 PF02381 MraZ protein, putative antitoxin-like LDL78_08500 PF01795 MraW methylase family LDL78_08510 PF03793 PASTA domain LDL78_08510 PF03717 Penicillin-binding Protein dimerisation domain LDL78_08510 PF00905 Penicillin binding protein transpeptidase domain LDL78_08515 PF01225 Mur ligase family, catalytic domain LDL78_08515 PF02875 Mur ligase family, glutamate ligase domain LDL78_08515 PF08245 Mur ligase middle domain LDL78_08520 PF00953 Glycosyl transferase family 4 LDL78_08520 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LDL78_08525 PF02875 Mur ligase family, glutamate ligase domain LDL78_08525 PF08245 Mur ligase middle domain LDL78_08530 PF01098 Cell cycle protein LDL78_08535 PF03033 Glycosyltransferase family 28 N-terminal domain LDL78_08535 PF04101 Glycosyltransferase family 28 C-terminal domain LDL78_08540 PF01225 Mur ligase family, catalytic domain LDL78_08540 PF02875 Mur ligase family, glutamate ligase domain LDL78_08540 PF08245 Mur ligase middle domain LDL78_08550 PF02491 SHS2 domain inserted in FTSA LDL78_08555 PF12327 FtsZ family, C-terminal domain LDL78_08555 PF00091 Tubulin/FtsZ family, GTPase domain LDL78_08560 PF09424 Yqey-like protein LDL78_08580 PF04002 RadC-like JAB domain LDL78_08590 PF13419 Haloacid dehalogenase-like hydrolase LDL78_08610 PF00004 ATPase family associated with various cellular activities (AAA) LDL78_08610 PF16193 AAA C-terminal domain LDL78_08610 PF12002 MgsA AAA+ ATPase C terminal LDL78_08620 PF00588 SpoU rRNA Methylase family LDL78_08620 PF08032 RNA 2'-O ribose methyltransferase substrate binding LDL78_08635 PF00593 TonB dependent receptor LDL78_08635 PF07715 TonB-dependent Receptor Plug Domain LDL78_08645 PF00164 Ribosomal protein S12/S23 LDL78_08650 PF00177 Ribosomal protein S7p/S5e LDL78_08655 PF03764 Elongation factor G, domain IV LDL78_08655 PF00009 Elongation factor Tu GTP binding domain LDL78_08655 PF00679 Elongation factor G C-terminus LDL78_08655 PF03144 Elongation factor Tu domain 2 LDL78_08655 PF14492 Elongation Factor G, domain II LDL78_08660 PF00338 Ribosomal protein S10p/S20e LDL78_08665 PF00297 Ribosomal protein L3 LDL78_08670 PF00573 Ribosomal protein L4/L1 family LDL78_08675 PF00276 Ribosomal protein L23 LDL78_08680 PF03947 Ribosomal Proteins L2, C-terminal domain LDL78_08680 PF00181 Ribosomal Proteins L2, RNA binding domain LDL78_08685 PF00203 Ribosomal protein S19 LDL78_08690 PF00237 Ribosomal protein L22p/L17e LDL78_08695 PF07650 KH domain LDL78_08695 PF00189 Ribosomal protein S3, C-terminal domain LDL78_08700 PF00252 Ribosomal protein L16p/L10e LDL78_08705 PF00831 Ribosomal L29 protein LDL78_08710 PF00366 Ribosomal protein S17 LDL78_08715 PF00238 Ribosomal protein L14p/L23e LDL78_08720 PF00467 KOW motif LDL78_08720 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LDL78_08725 PF00281 Ribosomal protein L5 LDL78_08725 PF00673 ribosomal L5P family C-terminus LDL78_08730 PF00253 Ribosomal protein S14p/S29e LDL78_08735 PF00410 Ribosomal protein S8 LDL78_08740 PF00347 Ribosomal protein L6 LDL78_08745 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LDL78_08750 PF00333 Ribosomal protein S5, N-terminal domain LDL78_08750 PF03719 Ribosomal protein S5, C-terminal domain LDL78_08755 PF00327 Ribosomal protein L30p/L7e LDL78_08760 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LDL78_08765 PF00344 SecY translocase LDL78_08770 PF01176 Translation initiation factor 1A / IF-1 LDL78_08775 PF00444 Ribosomal protein L36 LDL78_08780 PF00416 Ribosomal protein S13/S18 LDL78_08785 PF00411 Ribosomal protein S11 LDL78_08790 PF00163 Ribosomal protein S4/S9 N-terminal domain LDL78_08790 PF01479 S4 domain LDL78_08795 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LDL78_08795 PF01000 RNA polymerase Rpb3/RpoA insert domain LDL78_08795 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LDL78_08800 PF01196 Ribosomal protein L17 LDL78_08805 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LDL78_08805 PF00117 Glutamine amidotransferase class-I LDL78_08810 PF03952 Enolase, N-terminal domain LDL78_08810 PF00113 Enolase, C-terminal TIM barrel domain LDL78_08815 PF00285 Citrate synthase, C-terminal domain LDL78_08825 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region LDL78_08825 PF00326 Prolyl oligopeptidase family LDL78_08830 PF00854 POT family LDL78_08835 PF00854 POT family LDL78_08845 PF03772 Competence protein LDL78_08845 PF13567 Domain of unknown function (DUF4131) LDL78_08845 PF00753 Metallo-beta-lactamase superfamily LDL78_08850 PF00877 NlpC/P60 family LDL78_08855 PF02684 Lipid-A-disaccharide synthetase LDL78_08860 PF07478 D-ala D-ala ligase C-terminus LDL78_08860 PF01820 D-ala D-ala ligase N-terminus LDL78_08870 PF00849 RNA pseudouridylate synthase LDL78_08870 PF01479 S4 domain LDL78_08880 PF01839 FG-GAP repeat LDL78_08880 PF18370 Rhamnogalacturonan I lyases beta-sheet domain LDL78_08890 PF10459 Peptidase S46 LDL78_08895 PF05661 Protein of unknown function (DUF808) LDL78_08910 PF00593 TonB dependent receptor LDL78_08910 PF07715 TonB-dependent Receptor Plug Domain LDL78_08920 PF12848 ABC transporter LDL78_08920 PF16326 ABC transporter C-terminal domain LDL78_08920 PF00005 ABC transporter LDL78_08925 PF03358 NADPH-dependent FMN reductase LDL78_08925 PF01566 Natural resistance-associated macrophage protein LDL78_08935 PF08000 Bacterial PH domain LDL78_08950 PF03471 Transporter associated domain LDL78_08950 PF00999 Sodium/hydrogen exchanger family LDL78_08950 PF02080 TrkA-C domain LDL78_08970 PF03883 Peroxide stress protein YaaA LDL78_08985 PF01432 Peptidase family M3 LDL78_08995 PF10459 Peptidase S46 LDL78_09005 PF03449 Transcription elongation factor, N-terminal LDL78_09005 PF01272 Transcription elongation factor, GreA/GreB, C-term LDL78_09045 PF08281 Sigma-70, region 4 LDL78_09045 PF04542 Sigma-70 region 2 LDL78_09060 PF02735 Ku70/Ku80 beta-barrel domain LDL78_09065 PF01068 ATP dependent DNA ligase domain LDL78_09065 PF13298 DNA polymerase Ligase (LigD) LDL78_09065 PF04679 ATP dependent DNA ligase C terminal region LDL78_09075 PF02308 MgtC family LDL78_09085 PF04193 PQ loop repeat LDL78_09095 PF05974 Domain of unknown function (DUF892) LDL78_09140 PF00106 short chain dehydrogenase LDL78_09175 PF02698 DUF218 domain LDL78_09180 PF06123 Inner membrane protein CreD LDL78_09200 PF00793 DAHP synthetase I family LDL78_09205 PF03144 Elongation factor Tu domain 2 LDL78_09205 PF00679 Elongation factor G C-terminus LDL78_09205 PF14492 Elongation Factor G, domain II LDL78_09205 PF00009 Elongation factor Tu GTP binding domain LDL78_09230 PF00535 Glycosyl transferase family 2 LDL78_09255 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LDL78_09285 PF13439 Glycosyltransferase Family 4 LDL78_09285 PF00534 Glycosyl transferases group 1 LDL78_09290 PF05523 WxcM-like, C-terminal LDL78_09295 PF00535 Glycosyl transferase family 2 LDL78_09315 PF00005 ABC transporter LDL78_09340 PF07969 Amidohydrolase family LDL78_09350 PF07075 Protein of unknown function (DUF1343) LDL78_09355 PF12704 MacB-like periplasmic core domain LDL78_09355 PF02687 FtsX-like permease family LDL78_09360 PF00291 Pyridoxal-phosphate dependent enzyme LDL78_09360 PF00571 CBS domain LDL78_09380 PF07885 Ion channel LDL78_09380 PF02254 TrkA-N domain LDL78_09385 PF01235 Sodium:alanine symporter family LDL78_09390 PF10531 SLBB domain LDL78_09395 PF02770 Acyl-CoA dehydrogenase, middle domain LDL78_09395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LDL78_09395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LDL78_09405 PF01165 Ribosomal protein S21 LDL78_09410 PF02899 Phage integrase, N-terminal SAM-like domain LDL78_09410 PF00589 Phage integrase family LDL78_09415 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LDL78_09415 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus LDL78_09440 PF03144 Elongation factor Tu domain 2 LDL78_09440 PF00009 Elongation factor Tu GTP binding domain LDL78_09440 PF03143 Elongation factor Tu C-terminal domain LDL78_09450 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LDL78_09455 PF02357 Transcription termination factor nusG LDL78_09455 PF00467 KOW motif LDL78_09460 PF00298 Ribosomal protein L11, RNA binding domain LDL78_09460 PF03946 Ribosomal protein L11, N-terminal domain LDL78_09465 PF00687 Ribosomal protein L1p/L10e family LDL78_09470 PF00466 Ribosomal protein L10 LDL78_09475 PF00542 Ribosomal protein L7/L12 C-terminal domain LDL78_09475 PF16320 Ribosomal protein L7/L12 dimerisation domain LDL78_09480 PF04560 RNA polymerase Rpb2, domain 7 LDL78_09480 PF00562 RNA polymerase Rpb2, domain 6 LDL78_09480 PF10385 RNA polymerase beta subunit external 1 domain LDL78_09480 PF04565 RNA polymerase Rpb2, domain 3 LDL78_09480 PF04561 RNA polymerase Rpb2, domain 2 LDL78_09480 PF04563 RNA polymerase beta subunit LDL78_09485 PF00623 RNA polymerase Rpb1, domain 2 LDL78_09485 PF04983 RNA polymerase Rpb1, domain 3 LDL78_09485 PF05000 RNA polymerase Rpb1, domain 4 LDL78_09485 PF04998 RNA polymerase Rpb1, domain 5 LDL78_09485 PF04997 RNA polymerase Rpb1, domain 1 LDL78_09495 PF00009 Elongation factor Tu GTP binding domain LDL78_09495 PF03144 Elongation factor Tu domain 2 LDL78_09495 PF16658 Class II release factor RF3, C-terminal domain LDL78_09510 PF00223 Photosystem I psaA/psaB protein LDL78_09510 PF00691 OmpA family LDL78_09515 PF00293 NUDIX domain LDL78_09525 PF01238 Phosphomannose isomerase type I LDL78_09545 PF12146 Serine aminopeptidase, S33 LDL78_09560 PF00082 Subtilase family LDL78_09560 PF01483 Proprotein convertase P-domain LDL78_09565 PF00183 Hsp90 protein LDL78_09575 PF03109 ABC1 family LDL78_09580 PF00326 Prolyl oligopeptidase family LDL78_09580 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region LDL78_09580 PF07676 WD40-like Beta Propeller Repeat LDL78_09585 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LDL78_09585 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LDL78_09600 PF00474 Sodium:solute symporter family LDL78_09610 PF02132 RecR protein LDL78_09610 PF13662 Toprim domain LDL78_09620 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LDL78_09620 PF00364 Biotin-requiring enzyme LDL78_09620 PF02817 e3 binding domain LDL78_09625 PF00929 Exonuclease LDL78_09630 PF01557 Fumarylacetoacetate (FAA) hydrolase family LDL78_09640 PF02464 Competence-damaged protein LDL78_09640 PF00994 Probable molybdopterin binding domain LDL78_09640 PF18146 Damage-inducible protein CinA KH domain LDL78_09645 PF00830 Ribosomal L28 family LDL78_09650 PF00471 Ribosomal protein L33 LDL78_09660 PF00448 SRP54-type protein, GTPase domain LDL78_09660 PF02881 SRP54-type protein, helical bundle domain LDL78_09665 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region LDL78_09665 PF00326 Prolyl oligopeptidase family LDL78_09665 PF07676 WD40-like Beta Propeller Repeat LDL78_09670 PF04055 Radical SAM superfamily LDL78_09670 PF18693 TRAM domain LDL78_09670 PF00919 Uncharacterized protein family UPF0004 LDL78_09705 PF13495 Phage integrase, N-terminal SAM-like domain LDL78_09705 PF00589 Phage integrase family LDL78_09735 PF00654 Voltage gated chloride channel LDL78_09785 PF00271 Helicase conserved C-terminal domain LDL78_09785 PF17757 UvrB interaction domain LDL78_09785 PF04851 Type III restriction enzyme, res subunit LDL78_09785 PF12344 Ultra-violet resistance protein B LDL78_09800 PF01479 S4 domain LDL78_09800 PF00849 RNA pseudouridylate synthase LDL78_09805 PF00011 Hsp20/alpha crystallin family LDL78_09810 PF10011 Predicted membrane protein (DUF2254) LDL78_09820 PF00549 CoA-ligase LDL78_09820 PF08442 ATP-grasp domain LDL78_09825 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LDL78_09825 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LDL78_09830 PF00313 'Cold-shock' DNA-binding domain LDL78_09835 PF01483 Proprotein convertase P-domain LDL78_09835 PF04389 Peptidase family M28 LDL78_09840 PF03060 Nitronate monooxygenase LDL78_09845 PF00082 Subtilase family LDL78_09860 PF14849 YidC periplasmic domain LDL78_09860 PF02096 60Kd inner membrane protein LDL78_09865 PF06418 CTP synthase N-terminus LDL78_09865 PF00117 Glutamine amidotransferase class-I LDL78_09875 PF12843 Putative quorum-sensing-regulated virulence factor LDL78_09890 PF05257 CHAP domain LDL78_09890 PF01476 LysM domain LDL78_09895 PF00117 Glutamine amidotransferase class-I LDL78_09895 PF02540 NAD synthase LDL78_09895 PF00958 GMP synthase C terminal domain LDL78_09900 PF10079 Bacillithiol biosynthesis BshC LDL78_09920 PF04011 LemA family LDL78_09930 PF12034 Domain of unknown function (DUF3520) LDL78_09930 PF00092 von Willebrand factor type A domain LDL78_09930 PF12450 von Willebrand factor LDL78_09945 PF00005 ABC transporter LDL78_09960 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LDL78_09965 PF12867 DinB superfamily LDL78_09980 PF01588 Putative tRNA binding domain LDL78_10000 PF01740 STAS domain LDL78_10000 PF00916 Sulfate permease family LDL78_10015 PF00005 ABC transporter LDL78_10015 PF00664 ABC transporter transmembrane region LDL78_10020 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LDL78_10020 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LDL78_10025 PF01029 NusB family LDL78_10035 PF02699 Preprotein translocase subunit LDL78_10040 PF07687 Peptidase dimerisation domain LDL78_10040 PF01546 Peptidase family M20/M25/M40 LDL78_10045 PF01180 Dihydroorotate dehydrogenase LDL78_10050 PF01810 LysE type translocator LDL78_10055 PF00682 HMGL-like LDL78_10060 PF02872 5'-nucleotidase, C-terminal domain LDL78_10060 PF00149 Calcineurin-like phosphoesterase LDL78_10090 PF00571 CBS domain LDL78_10090 PF00478 IMP dehydrogenase / GMP reductase domain LDL78_10105 PF00639 PPIC-type PPIASE domain LDL78_10105 PF09312 SurA N-terminal domain LDL78_10115 PF00639 PPIC-type PPIASE domain LDL78_10115 PF09312 SurA N-terminal domain LDL78_10120 PF17863 AAA lid domain LDL78_10120 PF07726 ATPase family associated with various cellular activities (AAA) LDL78_10125 PF00330 Aconitase family (aconitate hydratase) LDL78_10125 PF00694 Aconitase C-terminal domain LDL78_10130 PF00578 AhpC/TSA family LDL78_10155 PF01593 Flavin containing amine oxidoreductase LDL78_10175 PF01202 Shikimate kinase LDL78_10180 PF00156 Phosphoribosyl transferase domain LDL78_10185 PF01479 S4 domain LDL78_10195 PF02780 Transketolase, C-terminal domain LDL78_10195 PF02779 Transketolase, pyrimidine binding domain LDL78_10200 PF00456 Transketolase, thiamine diphosphate binding domain LDL78_10200 PF02779 Transketolase, pyrimidine binding domain LDL78_10200 PF02780 Transketolase, C-terminal domain LDL78_10205 PF01702 Queuine tRNA-ribosyltransferase LDL78_10220 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LDL78_10225 PF03796 DnaB-like helicase C terminal domain LDL78_10225 PF00772 DnaB-like helicase N terminal domain LDL78_10235 PF00691 OmpA family LDL78_10240 PF00453 Ribosomal protein L20 LDL78_10245 PF01632 Ribosomal protein L35 LDL78_10250 PF05198 Translation initiation factor IF-3, N-terminal domain LDL78_10250 PF00707 Translation initiation factor IF-3, C-terminal domain LDL78_10255 PF03129 Anticodon binding domain LDL78_10255 PF02824 TGS domain LDL78_10255 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LDL78_10255 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LDL78_10290 PF13580 SIS domain LDL78_10305 PF03971 Monomeric isocitrate dehydrogenase LDL78_10310 PF01245 Ribosomal protein L19 LDL78_10315 PF01746 tRNA (Guanine-1)-methyltransferase LDL78_10350 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LDL78_10350 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LDL78_10355 PF13180 PDZ domain LDL78_10355 PF17820 PDZ domain LDL78_10360 PF01678 Diaminopimelate epimerase LDL78_10370 PF02618 YceG-like family LDL78_10375 PF02225 PA domain LDL78_10375 PF04389 Peptidase family M28 LDL78_10385 PF00753 Metallo-beta-lactamase superfamily LDL78_10385 PF00581 Rhodanese-like domain LDL78_10400 PF03275 UDP-galactopyranose mutase LDL78_10425 PF02146 Sir2 family LDL78_10430 PF00588 SpoU rRNA Methylase family LDL78_10440 PF01725 Ham1 family LDL78_10445 PF03880 DbpA RNA binding domain LDL78_10445 PF00270 DEAD/DEAH box helicase LDL78_10445 PF00271 Helicase conserved C-terminal domain LDL78_10460 PF00171 Aldehyde dehydrogenase family LDL78_10485 PF13614 AAA domain LDL78_10490 PF17762 HTH domain found in ParB protein LDL78_10490 PF02195 ParB-like nuclease domain LDL78_10500 PF05173 Dihydrodipicolinate reductase, C-terminus LDL78_10500 PF01113 Dihydrodipicolinate reductase, N-terminus LDL78_10505 PF10502 Signal peptidase, peptidase S26 LDL78_10510 PF07995 Glucose / Sorbosone dehydrogenase LDL78_10520 PF00289 Biotin carboxylase, N-terminal domain LDL78_10520 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LDL78_10520 PF02785 Biotin carboxylase C-terminal domain LDL78_10525 PF01039 Carboxyl transferase domain LDL78_10530 PF01925 Sulfite exporter TauE/SafE LDL78_10535 PF00689 Cation transporting ATPase, C-terminus LDL78_10535 PF00690 Cation transporter/ATPase, N-terminus LDL78_10555 PF02405 Permease MlaE LDL78_10560 PF00005 ABC transporter LDL78_10585 PF16123 Hydroxyacylglutathione hydrolase C-terminus LDL78_10585 PF00753 Metallo-beta-lactamase superfamily LDL78_10610 PF00873 AcrB/AcrD/AcrF family LDL78_10620 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family LDL78_10625 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LDL78_10625 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LDL78_10635 PF00248 Aldo/keto reductase family LDL78_10640 PF00196 Bacterial regulatory proteins, luxR family LDL78_10660 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDL78_10665 PF00873 AcrB/AcrD/AcrF family LDL78_10685 PF00582 Universal stress protein family LDL78_10690 PF01048 Phosphorylase superfamily LDL78_10695 PF01791 DeoC/LacD family aldolase LDL78_10700 PF00085 Thioredoxin LDL78_10715 PF00512 His Kinase A (phospho-acceptor) domain LDL78_10715 PF13493 Domain of unknown function (DUF4118) LDL78_10715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL78_10715 PF02702 Osmosensitive K+ channel His kinase sensor domain LDL78_10720 PF00072 Response regulator receiver domain LDL78_10720 PF00486 Transcriptional regulatory protein, C terminal LDL78_10755 PF10996 Beta-Casp domain LDL78_10755 PF00753 Metallo-beta-lactamase superfamily LDL78_10755 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain LDL78_10795 PF02469 Fasciclin domain LDL78_10800 PF13473 Cupredoxin-like domain LDL78_10800 PF18764 Nitrous oxide reductase propeller repeat LDL78_10800 PF18793 Nitrous oxide reductase propeller repeat 2 LDL78_10820 PF13732 Domain of unknown function (DUF4162) LDL78_10820 PF00005 ABC transporter LDL78_10845 PF02445 Quinolinate synthetase A protein LDL78_10850 PF00890 FAD binding domain LDL78_10850 PF02910 Fumarate reductase flavoprotein C-term LDL78_10860 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain LDL78_10860 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain LDL78_10875 PF04405 Domain of Unknown function (DUF542) LDL78_10875 PF01814 Hemerythrin HHE cation binding domain LDL78_10885 PF00403 Heavy-metal-associated domain LDL78_10895 PF00115 Cytochrome C and Quinol oxidase polypeptide I LDL78_10905 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP LDL78_10905 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LDL78_10910 PF13746 4Fe-4S dicluster domain LDL78_10910 PF12801 4Fe-4S binding domain LDL78_10910 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase LDL78_10940 PF03781 Sulfatase-modifying factor enzyme 1 LDL78_10945 PF07732 Multicopper oxidase LDL78_10955 PF06969 HemN C-terminal domain LDL78_10955 PF04055 Radical SAM superfamily LDL78_10965 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDL78_11010 PF03466 LysR substrate binding domain LDL78_11010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDL78_11020 PF07726 ATPase family associated with various cellular activities (AAA) LDL78_11020 PF17863 AAA lid domain LDL78_11050 PF03458 UPF0126 domain LDL78_11055 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LDL78_11080 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDL78_11090 PF00211 Adenylate and Guanylate cyclase catalytic domain LDL78_11105 PF13443 Cro/C1-type HTH DNA-binding domain LDL78_11120 PF07694 5TMR of 5TMR-LYT LDL78_11120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL78_11120 PF06580 Histidine kinase LDL78_11140 PF04397 LytTr DNA-binding domain LDL78_11140 PF00072 Response regulator receiver domain LDL78_11185 PF00117 Glutamine amidotransferase class-I LDL78_11185 PF00425 chorismate binding enzyme LDL78_11185 PF04715 Anthranilate synthase component I, N terminal region LDL78_11200 PF01171 PP-loop family LDL78_11205 PF00365 Phosphofructokinase LDL78_11210 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LDL78_11210 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LDL78_11220 PF00342 Phosphoglucose isomerase LDL78_11225 PF01078 Magnesium chelatase, subunit ChlI LDL78_11225 PF13335 Magnesium chelatase, subunit ChlI C-terminal LDL78_11230 PF00675 Insulinase (Peptidase family M16) LDL78_11230 PF05193 Peptidase M16 inactive domain LDL78_11260 PF00672 HAMP domain LDL78_11260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL78_11260 PF07730 Histidine kinase LDL78_11265 PF00196 Bacterial regulatory proteins, luxR family LDL78_11265 PF00072 Response regulator receiver domain LDL78_11270 PF00849 RNA pseudouridylate synthase LDL78_11275 PF02548 Ketopantoate hydroxymethyltransferase LDL78_11285 PF03313 Serine dehydratase alpha chain LDL78_11285 PF03315 Serine dehydratase beta chain LDL78_11295 PF13438 Domain of unknown function (DUF4113) LDL78_11295 PF00817 impB/mucB/samB family LDL78_11295 PF11799 impB/mucB/samB family C-terminal domain LDL78_11310 PF00012 Hsp70 protein LDL78_11330 PF03061 Thioesterase superfamily LDL78_11335 PF00425 chorismate binding enzyme LDL78_11340 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LDL78_11340 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LDL78_11350 PF17783 CvfB-like winged helix domain LDL78_11350 PF13509 S1 domain LDL78_11365 PF00378 Enoyl-CoA hydratase/isomerase LDL78_11380 PF00733 Asparagine synthase LDL78_11380 PF13537 Glutamine amidotransferase domain LDL78_11390 PF02779 Transketolase, pyrimidine binding domain LDL78_11390 PF02780 Transketolase, C-terminal domain LDL78_11410 PF03641 Possible lysine decarboxylase LDL78_11415 PF17760 UvrA interaction domain LDL78_11415 PF17755 UvrA DNA-binding domain LDL78_11430 PF04336 Acyl carrier protein phosphodiesterase LDL78_11440 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LDL78_11440 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LDL78_11440 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LDL78_11440 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LDL78_11460 PF01694 Rhomboid family LDL78_11470 PF00578 AhpC/TSA family LDL78_11495 PF00210 Ferritin-like domain LDL78_11505 PF00459 Inositol monophosphatase family LDL78_11525 PF01507 Phosphoadenosine phosphosulfate reductase family LDL78_11535 PF00009 Elongation factor Tu GTP binding domain LDL78_11550 PF01943 Polysaccharide biosynthesis protein LDL78_11565 PF00535 Glycosyl transferase family 2 LDL78_11580 PF13439 Glycosyltransferase Family 4 LDL78_11580 PF00534 Glycosyl transferases group 1 LDL78_11590 PF02397 Bacterial sugar transferase LDL78_11655 PF02661 Fic/DOC family LDL78_11655 PF13784 Fic/DOC family N-terminal LDL78_11700 PF01339 CheB methylesterase LDL78_11700 PF00072 Response regulator receiver domain LDL78_11775 PF00266 Aminotransferase class-V LDL78_11790 PF02463 RecF/RecN/SMC N terminal domain LDL78_11815 PF13361 UvrD-like helicase C-terminal domain LDL78_11815 PF12705 PD-(D/E)XK nuclease superfamily LDL78_11815 PF00580 UvrD/REP helicase N-terminal domain LDL78_11820 PF13175 AAA ATPase domain LDL78_11840 PF00593 TonB dependent receptor LDL78_11840 PF07715 TonB-dependent Receptor Plug Domain LDL78_11895 PF11799 impB/mucB/samB family C-terminal domain LDL78_11895 PF00817 impB/mucB/samB family LDL78_11895 PF11798 IMS family HHH motif LDL78_11900 PF02811 PHP domain LDL78_11900 PF07733 Bacterial DNA polymerase III alpha NTPase domain LDL78_11900 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LDL78_11900 PF14579 Helix-hairpin-helix motif LDL78_11915 PF07730 Histidine kinase LDL78_11915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL78_11915 PF05384 Sensor protein DegS LDL78_11940 PF02397 Bacterial sugar transferase LDL78_11945 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LDL78_11950 PF02719 Polysaccharide biosynthesis protein LDL78_11955 PF18412 Outer-membrane lipoprotein Wza C-terminal domain LDL78_11955 PF10531 SLBB domain LDL78_11955 PF02563 Polysaccharide biosynthesis/export protein LDL78_11960 PF13614 AAA domain LDL78_11970 PF10437 Bacterial lipoate protein ligase C-terminus LDL78_11970 PF03099 Biotin/lipoate A/B protein ligase family LDL78_11985 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LDL78_11990 PF12833 Helix-turn-helix domain LDL78_11990 PF02311 AraC-like ligand binding domain LDL78_11995 PF04264 YceI-like domain LDL78_12010 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LDL78_12015 PF07681 DoxX LDL78_12025 PF12631 MnmE helical domain LDL78_12025 PF10396 GTP-binding protein TrmE N-terminus LDL78_12025 PF01926 50S ribosome-binding GTPase LDL78_12035 PF00712 DNA polymerase III beta subunit, N-terminal domain LDL78_12035 PF02767 DNA polymerase III beta subunit, central domain LDL78_12035 PF02768 DNA polymerase III beta subunit, C-terminal domain LDL78_12060 PF02562 PhoH-like protein LDL78_12065 PF01259 SAICAR synthetase LDL78_12080 PF01235 Sodium:alanine symporter family LDL78_12090 PF03062 MBOAT, membrane-bound O-acyltransferase family LDL78_12095 PF05343 M42 glutamyl aminopeptidase LDL78_12145 PF10672 S-adenosylmethionine-dependent methyltransferase LDL78_12145 PF02926 THUMP domain LDL78_12145 PF01170 Putative RNA methylase family UPF0020 LDL78_12160 PF01938 TRAM domain LDL78_12160 PF05958 tRNA (Uracil-5-)-methyltransferase LDL78_12165 PF00202 Aminotransferase class-III LDL78_12195 PF00266 Aminotransferase class-V LDL78_12205 PF01551 Peptidase family M23 LDL78_12225 PF12072 Domain of unknown function (DUF3552) LDL78_12225 PF01966 HD domain LDL78_12225 PF00013 KH domain LDL78_12230 PF00248 Aldo/keto reductase family LDL78_12235 PF02899 Phage integrase, N-terminal SAM-like domain LDL78_12235 PF00589 Phage integrase family LDL78_12260 PF01220 Dehydroquinase class II LDL78_12265 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDL78_12265 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LDL78_12270 PF01641 SelR domain LDL78_12275 PF01641 SelR domain LDL78_12290 PF11700 Vacuole effluxer Atg22 like LDL78_12305 PF00004 ATPase family associated with various cellular activities (AAA) LDL78_12305 PF05362 Lon protease (S16) C-terminal proteolytic domain LDL78_12305 PF02190 ATP-dependent protease La (LON) substrate-binding domain LDL78_12315 PF02224 Cytidylate kinase LDL78_12320 PF01741 Large-conductance mechanosensitive channel, MscL LDL78_12325 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LDL78_12325 PF00072 Response regulator receiver domain LDL78_12325 PF01627 Hpt domain LDL78_12325 PF00512 His Kinase A (phospho-acceptor) domain LDL78_12325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL78_12325 PF00672 HAMP domain LDL78_12345 PF01037 Lrp/AsnC ligand binding domain LDL78_12355 PF03631 Virulence factor BrkB LDL78_12360 PF01965 DJ-1/PfpI family LDL78_12370 PF01761 3-dehydroquinate synthase LDL78_12375 PF01619 Proline dehydrogenase LDL78_12385 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LDL78_12385 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LDL78_12405 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LDL78_12410 PF02954 Bacterial regulatory protein, Fis family LDL78_12410 PF00072 Response regulator receiver domain LDL78_12410 PF00158 Sigma-54 interaction domain LDL78_12415 PF01966 HD domain LDL78_12420 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LDL78_12420 PF00132 Bacterial transferase hexapeptide (six repeats) LDL78_12425 PF07977 FabA-like domain LDL78_12425 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LDL78_12430 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LDL78_12430 PF00132 Bacterial transferase hexapeptide (six repeats) LDL78_12435 PF01132 Elongation factor P (EF-P) OB domain LDL78_12435 PF08207 Elongation factor P (EF-P) KOW-like domain LDL78_12435 PF09285 Elongation factor P, C-terminal LDL78_12440 PF00132 Bacterial transferase hexapeptide (six repeats) LDL78_12440 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LDL78_12450 PF00549 CoA-ligase LDL78_12450 PF02629 CoA binding domain LDL78_12470 PF00474 Sodium:solute symporter family LDL78_12475 PF01634 ATP phosphoribosyltransferase LDL78_12475 PF08029 HisG, C-terminal domain LDL78_12480 PF00815 Histidinol dehydrogenase LDL78_12485 PF00155 Aminotransferase class I and II LDL78_12490 PF00475 Imidazoleglycerol-phosphate dehydratase LDL78_12495 PF00117 Glutamine amidotransferase class-I LDL78_12500 PF00977 Histidine biosynthesis protein LDL78_12515 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LDL78_12515 PF01502 Phosphoribosyl-AMP cyclohydrolase LDL78_12520 PF01544 CorA-like Mg2+ transporter protein LDL78_12525 PF13472 GDSL-like Lipase/Acylhydrolase family LDL78_12530 PF00005 ABC transporter LDL78_12535 PF00005 ABC transporter LDL78_12535 PF02687 FtsX-like permease family LDL78_12535 PF12704 MacB-like periplasmic core domain LDL78_12545 PF00487 Fatty acid desaturase LDL78_12550 PF00313 'Cold-shock' DNA-binding domain LDL78_12580 PF09335 SNARE associated Golgi protein LDL78_12595 PF00199 Catalase LDL78_12595 PF06628 Catalase-related immune-responsive LDL78_12595 PF18011 C-terminal domain found in long catalases LDL78_12675 PF00005 ABC transporter LDL78_12690 PF02627 Carboxymuconolactone decarboxylase family LDL78_12710 PF00391 PEP-utilising enzyme, mobile domain LDL78_12710 PF02896 PEP-utilising enzyme, TIM barrel domain LDL78_12710 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LDL78_12715 PF00072 Response regulator receiver domain LDL78_12715 PF00486 Transcriptional regulatory protein, C terminal LDL78_12720 PF00672 HAMP domain LDL78_12720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL78_12720 PF00512 His Kinase A (phospho-acceptor) domain LDL78_12730 PF00011 Hsp20/alpha crystallin family LDL78_12770 PF00593 TonB dependent receptor LDL78_12770 PF07660 Secretin and TonB N terminus short domain LDL78_12770 PF07715 TonB-dependent Receptor Plug Domain LDL78_12780 PF00211 Adenylate and Guanylate cyclase catalytic domain LDL78_12785 PF01979 Amidohydrolase family LDL78_12810 PF01226 Formate/nitrite transporter LDL78_12825 PF00881 Nitroreductase family LDL78_12830 PF03741 Integral membrane protein TerC family LDL78_12850 PF00550 Phosphopantetheine attachment site LDL78_12855 PF02801 Beta-ketoacyl synthase, C-terminal domain LDL78_12855 PF00109 Beta-ketoacyl synthase, N-terminal domain LDL78_12860 PF07977 FabA-like domain LDL78_12870 PF02797 Chalcone and stilbene synthases, C-terminal domain LDL78_12870 PF00195 Chalcone and stilbene synthases, N-terminal domain LDL78_12875 PF13649 Methyltransferase domain LDL78_12885 PF05736 OprF membrane domain LDL78_12885 PF00691 OmpA family LDL78_12900 PF02779 Transketolase, pyrimidine binding domain LDL78_12900 PF02780 Transketolase, C-terminal domain LDL78_12915 PF01048 Phosphorylase superfamily LDL78_12925 PF03167 Uracil DNA glycosylase superfamily LDL78_12930 PF01713 Smr domain LDL78_12930 PF00488 MutS domain V LDL78_12935 PF04134 Protein of unknown function, DUF393 LDL78_12945 PF00375 Sodium:dicarboxylate symporter family LDL78_12950 PF01264 Chorismate synthase LDL78_12960 PF02913 FAD linked oxidases, C-terminal domain LDL78_12960 PF01565 FAD binding domain LDL78_12960 PF13183 4Fe-4S dicluster domain LDL78_12970 PF13439 Glycosyltransferase Family 4 LDL78_12970 PF00534 Glycosyl transferases group 1 LDL78_12975 PF00933 Glycosyl hydrolase family 3 N terminal domain LDL78_12975 PF01915 Glycosyl hydrolase family 3 C-terminal domain LDL78_12985 PF02754 Cysteine-rich domain LDL78_12985 PF13183 4Fe-4S dicluster domain LDL78_12985 PF02665 Nitrate reductase gamma subunit LDL78_12995 PF13183 4Fe-4S dicluster domain LDL78_12995 PF02754 Cysteine-rich domain LDL78_13000 PF02470 MlaD protein LDL78_13005 PF11741 AMIN domain LDL78_13005 PF01520 N-acetylmuramoyl-L-alanine amidase LDL78_13015 PF01042 Endoribonuclease L-PSP LDL78_13025 PF00814 Glycoprotease family LDL78_13030 PF04452 RNA methyltransferase LDL78_13040 PF01594 AI-2E family transporter LDL78_13065 PF07698 7TM receptor with intracellular HD hydrolase LDL78_13065 PF07697 7TM-HD extracellular LDL78_13065 PF01966 HD domain LDL78_13070 PF02803 Thiolase, C-terminal domain LDL78_13070 PF00108 Thiolase, N-terminal domain LDL78_13075 PF00877 NlpC/P60 family LDL78_13080 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) LDL78_13080 PF13181 Tetratricopeptide repeat LDL78_13085 PF03989 DNA gyrase C-terminal domain, beta-propeller LDL78_13085 PF00521 DNA gyrase/topoisomerase IV, subunit A LDL78_13090 PF02861 Clp amino terminal domain, pathogenicity island component LDL78_13090 PF00004 ATPase family associated with various cellular activities (AAA) LDL78_13090 PF07724 AAA domain (Cdc48 subfamily) LDL78_13090 PF17871 AAA lid domain LDL78_13090 PF10431 C-terminal, D2-small domain, of ClpB protein LDL78_13105 PF00221 Aromatic amino acid lyase LDL78_13110 PF01256 Carbohydrate kinase LDL78_13135 PF00196 Bacterial regulatory proteins, luxR family LDL78_13135 PF00072 Response regulator receiver domain LDL78_13140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL78_13140 PF07730 Histidine kinase LDL78_13140 PF05231 MASE1 LDL78_13150 PF00892 EamA-like transporter family LDL78_13155 PF00270 DEAD/DEAH box helicase LDL78_13155 PF00271 Helicase conserved C-terminal domain LDL78_13160 PF17757 UvrB interaction domain LDL78_13160 PF03461 TRCF domain LDL78_13160 PF00271 Helicase conserved C-terminal domain LDL78_13160 PF02559 CarD-like/TRCF domain LDL78_13160 PF00270 DEAD/DEAH box helicase LDL78_13165 PF09905 DNA-binding protein VF530 LDL78_13175 PF00679 Elongation factor G C-terminus LDL78_13175 PF14492 Elongation Factor G, domain II LDL78_13175 PF03764 Elongation factor G, domain IV LDL78_13175 PF00009 Elongation factor Tu GTP binding domain LDL78_13175 PF03144 Elongation factor Tu domain 2 LDL78_13185 PF00313 'Cold-shock' DNA-binding domain LDL78_13190 PF01625 Peptide methionine sulfoxide reductase LDL78_13210 PF04264 YceI-like domain LDL78_13215 PF02678 Pirin LDL78_13215 PF05726 Pirin C-terminal cupin domain LDL78_13220 PF05726 Pirin C-terminal cupin domain LDL78_13220 PF02678 Pirin LDL78_13270 PF03979 Sigma-70 factor, region 1.1 LDL78_13270 PF04545 Sigma-70, region 4 LDL78_13270 PF04539 Sigma-70 region 3 LDL78_13270 PF04542 Sigma-70 region 2 LDL78_13270 PF00140 Sigma-70 factor, region 1.2 LDL78_13275 PF02080 TrkA-C domain LDL78_13275 PF03600 Citrate transporter LDL78_13280 PF00924 Mechanosensitive ion channel LDL78_13280 PF05552 Conserved TM helix LDL78_13295 PF00106 short chain dehydrogenase LDL78_13305 PF12794 Mechanosensitive ion channel inner membrane domain 1 LDL78_13305 PF00924 Mechanosensitive ion channel LDL78_13305 PF12795 Mechanosensitive ion channel porin domain LDL78_13310 PF12823 Domain of unknown function (DUF3817) LDL78_13315 PF00924 Mechanosensitive ion channel LDL78_13340 PF00171 Aldehyde dehydrogenase family LDL78_13345 PF08669 Glycine cleavage T-protein C-terminal barrel domain LDL78_13345 PF01571 Aminomethyltransferase folate-binding domain LDL78_13350 PF04960 Glutaminase LDL78_13360 PF01329 Pterin 4 alpha carbinolamine dehydratase LDL78_13365 PF01709 Transcriptional regulator LDL78_13380 PF00465 Iron-containing alcohol dehydrogenase LDL78_13395 PF14490 Helix-hairpin-helix containing domain LDL78_13395 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain LDL78_13395 PF13538 UvrD-like helicase C-terminal domain LDL78_13425 PF12169 DNA polymerase III subunits gamma and tau domain III LDL78_13455 PF13089 Polyphosphate kinase N-terminal domain LDL78_13455 PF17941 Polyphosphate kinase C-terminal domain 1 LDL78_13455 PF13090 Polyphosphate kinase C-terminal domain 2 LDL78_13455 PF02503 Polyphosphate kinase middle domain LDL78_13465 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LDL78_13465 PF01243 Pyridoxamine 5'-phosphate oxidase LDL78_13470 PF12706 Beta-lactamase superfamily domain LDL78_13480 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LDL78_13480 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LDL78_13485 PF00156 Phosphoribosyl transferase domain LDL78_13490 PF00575 S1 RNA binding domain LDL78_13495 PF00521 DNA gyrase/topoisomerase IV, subunit A LDL78_13500 PF00204 DNA gyrase B LDL78_13500 PF00986 DNA gyrase B subunit, carboxyl terminus LDL78_13500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL78_13500 PF01751 Toprim domain LDL78_13505 PF00226 DnaJ domain LDL78_13505 PF01556 DnaJ C terminal domain LDL78_13505 PF00684 DnaJ central domain LDL78_13520 PF01926 50S ribosome-binding GTPase LDL78_13520 PF06071 Protein of unknown function (DUF933) LDL78_13540 PF00037 4Fe-4S binding domain LDL78_13550 PF00266 Aminotransferase class-V LDL78_13555 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LDL78_13555 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LDL78_13580 PF00593 TonB dependent receptor LDL78_13580 PF07715 TonB-dependent Receptor Plug Domain LDL78_13590 PF01227 GTP cyclohydrolase I LDL78_13595 PF00005 ABC transporter LDL78_13605 PF00072 Response regulator receiver domain LDL78_13605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL78_13605 PF00512 His Kinase A (phospho-acceptor) domain LDL78_13605 PF09308 LuxQ, periplasmic LDL78_13620 PF01979 Amidohydrolase family LDL78_13645 PF00753 Metallo-beta-lactamase superfamily LDL78_13655 PF00578 AhpC/TSA family LDL78_13660 PF00730 HhH-GPD superfamily base excision DNA repair protein LDL78_13660 PF10576 Iron-sulfur binding domain of endonuclease III LDL78_13660 PF00633 Helix-hairpin-helix motif LDL78_13675 PF00005 ABC transporter LDL78_13675 PF17755 UvrA DNA-binding domain LDL78_13675 PF17760 UvrA interaction domain LDL78_13710 PF00155 Aminotransferase class I and II LDL78_13715 PF00291 Pyridoxal-phosphate dependent enzyme LDL78_13715 PF00571 CBS domain LDL78_13720 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LDL78_13720 PF00326 Prolyl oligopeptidase family LDL78_13725 PF02575 YbaB/EbfC DNA-binding family LDL78_13730 PF07411 Domain of unknown function (DUF1508) LDL78_13735 PF01212 Beta-eliminating lyase LDL78_13785 PF03960 ArsC family LDL78_13790 PF07715 TonB-dependent Receptor Plug Domain LDL78_13790 PF00593 TonB dependent receptor LDL78_13800 PF10415 Fumarase C C-terminus LDL78_13800 PF00206 Lyase LDL78_13805 PF01578 Cytochrome C assembly protein LDL78_13805 PF05140 ResB-like family LDL78_13840 PF02545 Maf-like protein LDL78_13870 PF01189 16S rRNA methyltransferase RsmB/F LDL78_13870 PF01029 NusB family LDL78_13885 PF02769 AIR synthase related protein, C-terminal domain LDL78_13885 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LDL78_13885 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LDL78_13925 PF08534 Redoxin LDL78_13985 PF00501 AMP-binding enzyme LDL78_13995 PF00893 Small Multidrug Resistance protein LDL78_14000 PF01047 MarR family LDL78_14005 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LDL78_14005 PF00378 Enoyl-CoA hydratase/isomerase LDL78_14005 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LDL78_14015 PF00108 Thiolase, N-terminal domain LDL78_14015 PF02803 Thiolase, C-terminal domain LDL78_14025 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LDL78_14025 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LDL78_14025 PF02770 Acyl-CoA dehydrogenase, middle domain LDL78_14035 PF04389 Peptidase family M28 LDL78_14035 PF04151 Bacterial pre-peptidase C-terminal domain LDL78_14050 PF01979 Amidohydrolase family LDL78_14055 PF02469 Fasciclin domain LDL78_14060 PF04972 BON domain LDL78_14060 PF01476 LysM domain LDL78_14085 PF00326 Prolyl oligopeptidase family LDL78_14095 PF00781 Diacylglycerol kinase catalytic domain LDL78_14120 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDL78_14120 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LDL78_14125 PF01053 Cys/Met metabolism PLP-dependent enzyme LDL78_14145 PF03553 Na+/H+ antiporter family LDL78_14150 PF10417 C-terminal domain of 1-Cys peroxiredoxin LDL78_14150 PF00578 AhpC/TSA family LDL78_14155 PF00085 Thioredoxin LDL78_14165 PF08534 Redoxin LDL78_14185 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LDL78_14185 PF09397 Ftsk gamma domain LDL78_14185 PF01580 FtsK/SpoIIIE family LDL78_14185 PF17854 FtsK alpha domain LDL78_14200 PF00925 GTP cyclohydrolase II LDL78_14200 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LDL78_14205 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LDL78_14220 PF00589 Phage integrase family LDL78_14220 PF02899 Phage integrase, N-terminal SAM-like domain LDL78_14260 PF13676 TIR domain LDL78_14280 PF00905 Penicillin binding protein transpeptidase domain LDL78_14280 PF00912 Transglycosylase LDL78_14280 PF17092 Penicillin-binding protein OB-like domain LDL78_14305 PF07715 TonB-dependent Receptor Plug Domain LDL78_14305 PF00593 TonB dependent receptor LDL78_14315 PF00326 Prolyl oligopeptidase family LDL78_14315 PF07676 WD40-like Beta Propeller Repeat LDL78_14315 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region LDL78_14330 PF12833 Helix-turn-helix domain LDL78_14340 PF00155 Aminotransferase class I and II LDL78_14375 PF01520 N-acetylmuramoyl-L-alanine amidase LDL78_14455 PF00270 DEAD/DEAH box helicase LDL78_14455 PF17191 RecG wedge domain LDL78_14455 PF13749 Putative ATP-dependent DNA helicase recG C-terminal LDL78_14485 PF00436 Single-strand binding protein family LDL78_14515 PF00482 Type II secretion system (T2SS), protein F LDL78_14530 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LDL78_14530 PF00437 Type II/IV secretion system protein LDL78_14630 PF16177 Acetyl-coenzyme A synthetase N-terminus LDL78_14630 PF00501 AMP-binding enzyme LDL78_14630 PF13193 AMP-binding enzyme C-terminal domain LDL78_14640 PF12833 Helix-turn-helix domain LDL78_14640 PF10114 Sensory domain found in PocR LDL78_14650 PF08328 Adenylosuccinate lyase C-terminal LDL78_14650 PF00206 Lyase LDL78_14670 PF04542 Sigma-70 region 2 LDL78_14670 PF08281 Sigma-70, region 4 LDL78_14695 PF01032 FecCD transport family LDL78_14700 PF00005 ABC transporter LDL78_14705 PF02646 RmuC family LDL78_14720 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LDL78_14720 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LDL78_14720 PF02142 MGS-like domain LDL78_14725 PF00468 Ribosomal protein L34 LDL78_14755 PF00919 Uncharacterized protein family UPF0004 LDL78_14755 PF01938 TRAM domain LDL78_14755 PF04055 Radical SAM superfamily LDL78_14760 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDL78_14775 PF01197 Ribosomal protein L31 LDL78_14785 PF00535 Glycosyl transferase family 2 LDL78_14790 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LDL78_14790 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LDL78_14790 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LDL78_14790 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LDL78_14795 PF00664 ABC transporter transmembrane region LDL78_14795 PF00005 ABC transporter LDL78_14800 PF08281 Sigma-70, region 4 LDL78_14800 PF04542 Sigma-70 region 2 LDL78_14830 PF00875 DNA photolyase LDL78_14830 PF03441 FAD binding domain of DNA photolyase LDL78_14845 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LDL78_14855 PF04359 Protein of unknown function (DUF493) LDL78_14865 PF00270 DEAD/DEAH box helicase LDL78_14865 PF00271 Helicase conserved C-terminal domain LDL78_14865 PF00570 HRDC domain LDL78_14865 PF16124 RecQ zinc-binding LDL78_14865 PF09382 RQC domain LDL78_14870 PF02911 Formyl transferase, C-terminal domain LDL78_14870 PF00551 Formyl transferase LDL78_14875 PF00216 Bacterial DNA-binding protein LDL78_14880 PF02622 Uncharacterized ACR, COG1678 LDL78_14915 PF03129 Anticodon binding domain LDL78_14915 PF13393 Histidyl-tRNA synthetase LDL78_14920 PF12704 MacB-like periplasmic core domain LDL78_14920 PF02687 FtsX-like permease family LDL78_14930 PF03948 Ribosomal protein L9, C-terminal domain LDL78_14930 PF01281 Ribosomal protein L9, N-terminal domain LDL78_14935 PF01084 Ribosomal protein S18 LDL78_14940 PF01250 Ribosomal protein S6 LDL78_14945 PF04397 LytTr DNA-binding domain LDL78_14945 PF00072 Response regulator receiver domain LDL78_14950 PF00271 Helicase conserved C-terminal domain LDL78_14950 PF17764 3′ DNA-binding domain (3′BD) LDL78_14950 PF18074 Primosomal protein N C-terminal domain LDL78_14950 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LDL78_14950 PF04851 Type III restriction enzyme, res subunit LDL78_14960 PF03631 Virulence factor BrkB LDL78_14965 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LDL78_14965 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LDL78_14970 PF02590 Predicted SPOUT methyltransferase LDL78_15000 PF01642 Methylmalonyl-CoA mutase LDL78_15000 PF02310 B12 binding domain LDL78_15010 PF01642 Methylmalonyl-CoA mutase LDL78_15020 PF00485 Phosphoribulokinase / Uridine kinase family LDL78_15045 PF08676 MutL C terminal dimerisation domain LDL78_15045 PF01119 DNA mismatch repair protein, C-terminal domain LDL78_15055 PF00885 6,7-dimethyl-8-ribityllumazine synthase LDL78_15065 PF02463 RecF/RecN/SMC N terminal domain LDL78_15080 PF00334 Nucleoside diphosphate kinase LDL78_15085 PF02272 DHHA1 domain LDL78_15085 PF01368 DHH family LDL78_15095 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LDL78_15100 PF01546 Peptidase family M20/M25/M40 LDL78_15100 PF07687 Peptidase dimerisation domain LDL78_15135 PF00588 SpoU rRNA Methylase family LDL78_15135 PF08032 RNA 2'-O ribose methyltransferase substrate binding LDL78_15140 PF01435 Peptidase family M48 LDL78_15160 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LDL78_15160 PF03483 B3/4 domain LDL78_15160 PF03147 Ferredoxin-fold anticodon binding domain LDL78_15160 PF01588 Putative tRNA binding domain LDL78_15160 PF03484 tRNA synthetase B5 domain LDL78_15165 PF02469 Fasciclin domain LDL78_15190 PF12848 ABC transporter LDL78_15190 PF00005 ABC transporter LDL78_15200 PF00923 Transaldolase/Fructose-6-phosphate aldolase LDL78_15205 PF00106 short chain dehydrogenase LDL78_15235 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LDL78_15245 PF00464 Serine hydroxymethyltransferase LDL78_15265 PF00004 ATPase family associated with various cellular activities (AAA) LDL78_15265 PF10431 C-terminal, D2-small domain, of ClpB protein LDL78_15265 PF02861 Clp amino terminal domain, pathogenicity island component LDL78_15265 PF17871 AAA lid domain LDL78_15265 PF07724 AAA domain (Cdc48 subfamily) LDL78_15300 PF05532 CsbD-like LDL78_15310 PF01668 SmpB protein LDL78_15330 PF13302 Acetyltransferase (GNAT) domain LDL78_15345 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LDL78_15345 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LDL78_15355 PF01168 Alanine racemase, N-terminal domain LDL78_15360 PF01336 OB-fold nucleic acid binding domain LDL78_15360 PF11490 DNA polymerase III polC-type N-terminus II LDL78_15360 PF07733 Bacterial DNA polymerase III alpha NTPase domain LDL78_15360 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LDL78_15360 PF14579 Helix-hairpin-helix motif LDL78_15360 PF02811 PHP domain LDL78_15360 PF00929 Exonuclease LDL78_15365 PF00520 Ion transport protein LDL78_15365 PF00027 Cyclic nucleotide-binding domain LDL78_15375 PF00072 Response regulator receiver domain LDL78_15375 PF00486 Transcriptional regulatory protein, C terminal LDL78_15380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL78_15380 PF00512 His Kinase A (phospho-acceptor) domain LDL78_15385 PF01121 Dephospho-CoA kinase LDL78_15395 PF00535 Glycosyl transferase family 2 LDL78_15420 PF02463 RecF/RecN/SMC N terminal domain LDL78_15430 PF04127 DNA / pantothenate metabolism flavoprotein LDL78_15430 PF02441 Flavoprotein LDL78_15445 PF00701 Dihydrodipicolinate synthetase family LDL78_15455 PF03120 NAD-dependent DNA ligase OB-fold domain LDL78_15455 PF01653 NAD-dependent DNA ligase adenylation domain LDL78_15455 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LDL78_15455 PF00533 BRCA1 C Terminus (BRCT) domain LDL78_15455 PF12826 Helix-hairpin-helix motif LDL78_15460 PF00230 Major intrinsic protein LDL78_15465 PF03641 Possible lysine decarboxylase LDL78_15470 PF05175 Methyltransferase small domain LDL78_15470 PF17827 PrmC N-terminal domain LDL78_15475 PF00583 Acetyltransferase (GNAT) family LDL78_15480 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LDL78_15480 PF01872 RibD C-terminal domain LDL78_15490 PF09186 Domain of unknown function (DUF1949) LDL78_15490 PF01205 Uncharacterized protein family UPF0029