locus-tag class description AP3564_00085 PF09299 Mu transposase, C-terminal AP3564_00085 PF00665 Integrase core domain AP3564_00140 PF05593 RHS Repeat AP3564_00165 PF05593 RHS Repeat AP3564_00170 PF13335 Magnesium chelatase, subunit ChlI C-terminal AP3564_00170 PF01078 Magnesium chelatase, subunit ChlI AP3564_00185 PF00005 ABC transporter AP3564_00185 PF12558 ATP-binding cassette cobalt transporter AP3564_00190 PF07155 ECF-type riboflavin transporter, S component AP3564_00205 PF00392 Bacterial regulatory proteins, gntR family AP3564_00205 PF00155 Aminotransferase class I and II AP3564_00215 PF13673 Acetyltransferase (GNAT) domain AP3564_00235 PF13439 Glycosyltransferase Family 4 AP3564_00240 PF02769 AIR synthase related protein, C-terminal domain AP3564_00240 PF00586 AIR synthase related protein, N-terminal domain AP3564_00245 PF00795 Carbon-nitrogen hydrolase AP3564_00250 PF03358 NADPH-dependent FMN reductase AP3564_00280 PF02653 Branched-chain amino acid transport system / permease component AP3564_00285 PF00005 ABC transporter AP3564_00290 PF12399 Branched-chain amino acid ATP-binding cassette transporter AP3564_00290 PF00005 ABC transporter AP3564_00305 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AP3564_00305 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AP3564_00310 PF01575 MaoC like domain AP3564_00315 PF13193 AMP-binding enzyme C-terminal domain AP3564_00315 PF00501 AMP-binding enzyme AP3564_00335 PF00392 Bacterial regulatory proteins, gntR family AP3564_00335 PF00155 Aminotransferase class I and II AP3564_00345 PF00202 Aminotransferase class-III AP3564_00350 PF00171 Aldehyde dehydrogenase family AP3564_00370 PF01979 Amidohydrolase family AP3564_00375 PF04542 Sigma-70 region 2 AP3564_00375 PF08281 Sigma-70, region 4 AP3564_00385 PF00005 ABC transporter AP3564_00385 PF13732 Domain of unknown function (DUF4162) AP3564_00415 PF00005 ABC transporter AP3564_00435 PF00072 Response regulator receiver domain AP3564_00435 PF00486 Transcriptional regulatory protein, C terminal AP3564_00440 PF00512 His Kinase A (phospho-acceptor) domain AP3564_00440 PF00989 PAS fold AP3564_00440 PF16736 Single Cache-like AP3564_00440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP3564_00450 PF00106 short chain dehydrogenase AP3564_00455 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AP3564_00455 PF05043 Mga helix-turn-helix domain AP3564_00455 PF00874 PRD domain AP3564_00455 PF08279 HTH domain AP3564_00465 PF03608 PTS system enzyme II sorbitol-specific factor AP3564_00470 PF07663 Sorbitol phosphotransferase enzyme II C-terminus AP3564_00470 PF03612 Sorbitol phosphotransferase enzyme II N-terminus AP3564_00480 PF00255 Glutathione peroxidase AP3564_00485 PF00753 Metallo-beta-lactamase superfamily AP3564_00490 PF04231 Endonuclease I AP3564_00495 PF00795 Carbon-nitrogen hydrolase AP3564_00505 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AP3564_00505 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AP3564_00505 PF02378 Phosphotransferase system, EIIC AP3564_00510 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AP3564_00515 PF03611 PTS system sugar-specific permease component AP3564_00520 PF00107 Zinc-binding dehydrogenase AP3564_00520 PF08240 Alcohol dehydrogenase GroES-like domain AP3564_00530 PF00107 Zinc-binding dehydrogenase AP3564_00530 PF08240 Alcohol dehydrogenase GroES-like domain AP3564_00550 PF07690 Major Facilitator Superfamily AP3564_00550 PF00083 Sugar (and other) transporter AP3564_00555 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AP3564_00555 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AP3564_00565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP3564_00565 PF03466 LysR substrate binding domain AP3564_00570 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal AP3564_00570 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal AP3564_00575 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AP3564_00580 PF00171 Aldehyde dehydrogenase family AP3564_00585 PF01613 Flavin reductase like domain AP3564_00590 PF06574 FAD synthetase AP3564_00590 PF01687 Riboflavin kinase AP3564_00595 PF00701 Dihydrodipicolinate synthetase family AP3564_00600 PF01557 Fumarylacetoacetate (FAA) hydrolase family AP3564_00605 PF01557 Fumarylacetoacetate (FAA) hydrolase family AP3564_00615 PF00171 Aldehyde dehydrogenase family AP3564_00625 PF00171 Aldehyde dehydrogenase family AP3564_00630 PF00465 Iron-containing alcohol dehydrogenase AP3564_00645 PF02653 Branched-chain amino acid transport system / permease component AP3564_00650 PF02653 Branched-chain amino acid transport system / permease component AP3564_00650 PF11862 Domain of unknown function (DUF3382) AP3564_00655 PF00005 ABC transporter AP3564_00655 PF12399 Branched-chain amino acid ATP-binding cassette transporter AP3564_00660 PF00005 ABC transporter AP3564_00665 PF00355 Rieske [2Fe-2S] domain AP3564_00665 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AP3564_00670 PF00866 Ring hydroxylating beta subunit AP3564_00680 PF02830 V4R domain AP3564_00680 PF06505 Activator of aromatic catabolism AP3564_00680 PF02954 Bacterial regulatory protein, Fis family AP3564_00680 PF00158 Sigma-54 interaction domain AP3564_00700 PF07726 ATPase family associated with various cellular activities (AAA) AP3564_00700 PF17863 AAA lid domain AP3564_00705 PF01882 Protein of unknown function DUF58 AP3564_00710 PF13559 Domain of unknown function (DUF4129) AP3564_00710 PF01841 Transglutaminase-like superfamily AP3564_00710 PF11992 Domain of unknown function (DUF3488) AP3564_00715 PF00958 GMP synthase C terminal domain AP3564_00715 PF02540 NAD synthase AP3564_00715 PF00117 Glutamine amidotransferase class-I AP3564_00720 PF00860 Permease family AP3564_00725 PF00731 AIR carboxylase AP3564_00730 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AP3564_00730 PF02222 ATP-grasp domain AP3564_00735 PF10397 Adenylosuccinate lyase C-terminus AP3564_00735 PF00206 Lyase AP3564_00740 PF01259 SAICAR synthetase AP3564_00745 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AP3564_00755 PF00586 AIR synthase related protein, N-terminal domain AP3564_00755 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AP3564_00755 PF02769 AIR synthase related protein, C-terminal domain AP3564_00760 PF00156 Phosphoribosyl transferase domain AP3564_00765 PF02769 AIR synthase related protein, C-terminal domain AP3564_00765 PF00586 AIR synthase related protein, N-terminal domain AP3564_00770 PF00551 Formyl transferase AP3564_00775 PF01808 AICARFT/IMPCHase bienzyme AP3564_00775 PF02142 MGS-like domain AP3564_00790 PF02843 Phosphoribosylglycinamide synthetase, C domain AP3564_00790 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AP3564_00790 PF02844 Phosphoribosylglycinamide synthetase, N domain AP3564_00795 PF13382 Adenine deaminase C-terminal domain AP3564_00795 PF01979 Amidohydrolase family AP3564_00800 PF11258 Protein of unknown function (DUF3048) N-terminal domain AP3564_00800 PF17479 Protein of unknown function (DUF3048) C-terminal domain AP3564_00805 PF01371 Trp repressor protein AP3564_00810 PF01884 PcrB family AP3564_00815 PF00580 UvrD/REP helicase N-terminal domain AP3564_00815 PF13361 UvrD-like helicase C-terminal domain AP3564_00825 PF00533 BRCA1 C Terminus (BRCT) domain AP3564_00825 PF01653 NAD-dependent DNA ligase adenylation domain AP3564_00825 PF03120 NAD-dependent DNA ligase OB-fold domain AP3564_00825 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AP3564_00825 PF12826 Helix-hairpin-helix motif AP3564_00830 PF07537 CamS sex pheromone cAM373 precursor AP3564_00845 PF02686 Glu-tRNAGln amidotransferase C subunit AP3564_00850 PF01425 Amidase AP3564_00855 PF02934 GatB/GatE catalytic domain AP3564_00855 PF02637 GatB domain AP3564_00860 PF00781 Diacylglycerol kinase catalytic domain AP3564_00865 PF01938 TRAM domain AP3564_00865 PF05958 tRNA (Uracil-5-)-methyltransferase AP3564_00895 PF12161 HsdM N-terminal domain AP3564_00895 PF02384 N-6 DNA Methylase AP3564_00920 PF00271 Helicase conserved C-terminal domain AP3564_00920 PF00270 DEAD/DEAH box helicase AP3564_00925 PF03050 Transposase IS66 family AP3564_00925 PF13817 IS66 C-terminal element AP3564_00925 PF13007 Transposase C of IS166 homeodomain AP3564_00925 PF13005 zinc-finger binding domain of transposase IS66 AP3564_00945 PF00270 DEAD/DEAH box helicase AP3564_00945 PF08494 DEAD/H associated AP3564_00945 PF00271 Helicase conserved C-terminal domain AP3564_00955 PF13614 AAA domain AP3564_00965 PF09299 Mu transposase, C-terminal AP3564_00965 PF00665 Integrase core domain AP3564_00980 PF13614 AAA domain AP3564_01030 PF02667 Short chain fatty acid transporter AP3564_01035 PF03466 LysR substrate binding domain AP3564_01035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP3564_01040 PF00083 Sugar (and other) transporter AP3564_01040 PF07690 Major Facilitator Superfamily AP3564_01055 PF00440 Bacterial regulatory proteins, tetR family AP3564_01060 PF00005 ABC transporter AP3564_01095 PF06039 Malate:quinone oxidoreductase (Mqo) AP3564_01100 PF03992 Antibiotic biosynthesis monooxygenase AP3564_01105 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AP3564_01105 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AP3564_01110 PF13556 PucR C-terminal helix-turn-helix domain AP3564_01110 PF17853 GGDEF-like domain AP3564_01110 PF06018 CodY GAF-like domain AP3564_01115 PF00005 ABC transporter AP3564_01120 PF01497 Periplasmic binding protein AP3564_01125 PF01032 FecCD transport family AP3564_01130 PF00005 ABC transporter AP3564_01135 PF03992 Antibiotic biosynthesis monooxygenase AP3564_01145 PF00005 ABC transporter AP3564_01165 PF00440 Bacterial regulatory proteins, tetR family AP3564_01180 PF09704 CRISPR-associated protein (Cas_Cas5) AP3564_01200 PF01867 CRISPR associated protein Cas1 AP3564_01205 PF09827 CRISPR associated protein Cas2 AP3564_01210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP3564_01210 PF00672 HAMP domain AP3564_01210 PF12729 Four helix bundle sensory module for signal transduction AP3564_01220 PF00589 Phage integrase family AP3564_01225 PF02080 TrkA-C domain AP3564_01230 PF00999 Sodium/hydrogen exchanger family AP3564_01235 PF01546 Peptidase family M20/M25/M40 AP3564_01235 PF07687 Peptidase dimerisation domain AP3564_01245 PF07690 Major Facilitator Superfamily AP3564_01250 PF17922 Tetracyclin repressor-like, C-terminal domain AP3564_01250 PF00440 Bacterial regulatory proteins, tetR family AP3564_01255 PF06738 Putative threonine/serine exporter AP3564_01280 PF01202 Shikimate kinase AP3564_01285 PF00072 Response regulator receiver domain AP3564_01295 PF00005 ABC transporter AP3564_01295 PF08402 TOBE domain AP3564_01300 PF00528 Binding-protein-dependent transport system inner membrane component AP3564_01305 PF00528 Binding-protein-dependent transport system inner membrane component AP3564_01310 PF13416 Bacterial extracellular solute-binding protein AP3564_01320 PF07690 Major Facilitator Superfamily AP3564_01325 PF06628 Catalase-related immune-responsive AP3564_01325 PF00199 Catalase AP3564_01330 PF00664 ABC transporter transmembrane region AP3564_01330 PF00005 ABC transporter AP3564_01345 PF00583 Acetyltransferase (GNAT) family AP3564_01350 PF01032 FecCD transport family AP3564_01355 PF01032 FecCD transport family AP3564_01360 PF00005 ABC transporter AP3564_01365 PF01497 Periplasmic binding protein AP3564_01390 PF02602 Uroporphyrinogen-III synthase HemD AP3564_01405 PF03459 TOBE domain AP3564_01405 PF17912 MalK OB fold domain AP3564_01405 PF00005 ABC transporter AP3564_01410 PF00528 Binding-protein-dependent transport system inner membrane component AP3564_01415 PF00528 Binding-protein-dependent transport system inner membrane component AP3564_01420 PF13416 Bacterial extracellular solute-binding protein AP3564_01425 PF04309 Glycerol-3-phosphate responsive antiterminator AP3564_01430 PF00528 Binding-protein-dependent transport system inner membrane component AP3564_01440 PF00005 ABC transporter AP3564_01445 PF01638 HxlR-like helix-turn-helix AP3564_01460 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AP3564_01460 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AP3564_01460 PF02770 Acyl-CoA dehydrogenase, middle domain AP3564_01480 PF00155 Aminotransferase class I and II AP3564_01480 PF00392 Bacterial regulatory proteins, gntR family AP3564_01485 PF00795 Carbon-nitrogen hydrolase AP3564_01490 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AP3564_01490 PF13378 Enolase C-terminal domain-like AP3564_01495 PF09515 Thiamine transporter protein (Thia_YuaJ) AP3564_01500 PF04235 Protein of unknown function (DUF418) AP3564_01505 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AP3564_01510 PF09350 Domain of unknown function (DUF1992) AP3564_01520 PF06569 Protein of unknown function (DUF1128) AP3564_01525 PF01451 Low molecular weight phosphotyrosine protein phosphatase AP3564_01535 PF03631 Virulence factor BrkB AP3564_01555 PF00881 Nitroreductase family AP3564_01565 PF17932 Tetracyclin repressor-like, C-terminal domain AP3564_01565 PF00440 Bacterial regulatory proteins, tetR family AP3564_01585 PF01699 Sodium/calcium exchanger protein AP3564_01590 PF14167 YfkD-like protein AP3564_01595 PF04055 Radical SAM superfamily AP3564_01595 PF08756 YfkB-like domain AP3564_01620 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain AP3564_01620 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain AP3564_01630 PF00596 Class II Aldolase and Adducin N-terminal domain AP3564_01635 PF03079 ARD/ARD' family AP3564_01640 PF01636 Phosphotransferase enzyme family AP3564_01645 PF01008 Initiation factor 2 subunit family AP3564_01650 PF00795 Carbon-nitrogen hydrolase AP3564_01655 PF00155 Aminotransferase class I and II AP3564_01660 PF05681 Fumarate hydratase (Fumerase) AP3564_01660 PF05683 Fumarase C-terminus AP3564_01665 PF01522 Polysaccharide deacetylase AP3564_01670 PF00730 HhH-GPD superfamily base excision DNA repair protein AP3564_01675 PF05958 tRNA (Uracil-5-)-methyltransferase AP3564_01675 PF01938 TRAM domain AP3564_01680 PF07508 Recombinase AP3564_01680 PF13408 Recombinase zinc beta ribbon domain AP3564_01705 PF13276 HTH-like domain AP3564_01705 PF13333 Integrase core domain AP3564_01705 PF00665 Integrase core domain AP3564_01760 PF06013 Proteins of 100 residues with WXG AP3564_01780 PF10140 WXG100 protein secretion system (Wss), protein YukC AP3564_01785 PF01580 FtsK/SpoIIIE family AP3564_01785 PF12538 DNA transporter AP3564_01855 PF00082 Subtilase family AP3564_01890 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AP3564_01895 PF01380 SIS domain AP3564_01895 PF01418 Helix-turn-helix domain, rpiR family AP3564_01900 PF11975 Family 4 glycosyl hydrolase C-terminal domain AP3564_01900 PF02056 Family 4 glycosyl hydrolase AP3564_01905 PF00367 phosphotransferase system, EIIB AP3564_01905 PF02378 Phosphotransferase system, EIIC AP3564_01920 PF00005 ABC transporter AP3564_02000 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus AP3564_02000 PF08666 SAF domain AP3564_02005 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus AP3564_02020 PF00392 Bacterial regulatory proteins, gntR family AP3564_02020 PF07729 FCD domain AP3564_02045 PF17932 Tetracyclin repressor-like, C-terminal domain AP3564_02045 PF00440 Bacterial regulatory proteins, tetR family AP3564_02050 PF03819 MazG nucleotide pyrophosphohydrolase domain AP3564_02055 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AP3564_02065 PF00005 ABC transporter AP3564_02070 PF00528 Binding-protein-dependent transport system inner membrane component AP3564_02090 PF00082 Subtilase family AP3564_02100 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AP3564_02105 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AP3564_02105 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AP3564_02110 PF00107 Zinc-binding dehydrogenase AP3564_02110 PF08240 Alcohol dehydrogenase GroES-like domain AP3564_02140 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AP3564_02145 PF01435 Peptidase family M48 AP3564_02150 PF07690 Major Facilitator Superfamily AP3564_02170 PF13411 MerR HTH family regulatory protein AP3564_02170 PF07739 TipAS antibiotic-recognition domain AP3564_02180 PF02525 Flavodoxin-like fold AP3564_02200 PF01053 Cys/Met metabolism PLP-dependent enzyme AP3564_02205 PF03992 Antibiotic biosynthesis monooxygenase AP3564_02210 PF01758 Sodium Bile acid symporter family AP3564_02245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP3564_02245 PF03466 LysR substrate binding domain AP3564_02250 PF07690 Major Facilitator Superfamily AP3564_02255 PF04960 Glutaminase AP3564_02265 PF13180 PDZ domain AP3564_02270 PF07690 Major Facilitator Superfamily AP3564_02275 PF00205 Thiamine pyrophosphate enzyme, central domain AP3564_02275 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AP3564_02275 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AP3564_02280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP3564_02280 PF03466 LysR substrate binding domain AP3564_02285 PF03741 Integral membrane protein TerC family AP3564_02295 PF01472 PUA domain AP3564_02295 PF00696 Amino acid kinase family AP3564_02300 PF00171 Aldehyde dehydrogenase family AP3564_02315 PF02631 RecX family AP3564_02320 PF08838 Protein of unknown function (DUF1811) AP3564_02325 PF08176 Small acid-soluble spore protein K family AP3564_02330 PF04307 LexA-binding, inner membrane-associated putative hydrolase AP3564_02335 PF00730 HhH-GPD superfamily base excision DNA repair protein AP3564_02335 PF14815 NUDIX domain AP3564_02350 PF04259 Small, acid-soluble spore protein, gamma-type AP3564_02355 PF02673 Bacitracin resistance protein BacA AP3564_02365 PF04167 Protein of unknown function (DUF402) AP3564_02370 PF00664 ABC transporter transmembrane region AP3564_02370 PF00005 ABC transporter AP3564_02380 PF06081 Aromatic acid exporter family member 1 AP3564_02385 PF00202 Aminotransferase class-III AP3564_02390 PF00005 ABC transporter AP3564_02405 PF07885 Ion channel AP3564_02410 PF00578 AhpC/TSA family AP3564_02415 PF01475 Ferric uptake regulator family AP3564_02420 PF11023 Zinc-ribbon containing domain AP3564_02520 PF00589 Phage integrase family AP3564_02520 PF02899 Phage integrase, N-terminal SAM-like domain AP3564_02550 PF01266 FAD dependent oxidoreductase AP3564_02550 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AP3564_02555 PF04309 Glycerol-3-phosphate responsive antiterminator AP3564_02560 PF00989 PAS fold AP3564_02560 PF02954 Bacterial regulatory protein, Fis family AP3564_02560 PF00158 Sigma-54 interaction domain AP3564_02565 PF02733 Dak1 domain AP3564_02570 PF02734 DAK2 domain AP3564_02575 PF05524 PEP-utilising enzyme, N-terminal AP3564_02575 PF03610 PTS system fructose IIA component AP3564_02575 PF00391 PEP-utilising enzyme, mobile domain AP3564_02575 PF00381 PTS HPr component phosphorylation site AP3564_02580 PF00381 PTS HPr component phosphorylation site AP3564_02590 PF00230 Major intrinsic protein AP3564_02595 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AP3564_02595 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AP3564_02615 PF01965 DJ-1/PfpI family AP3564_02620 PF02082 Transcriptional regulator AP3564_02630 PF00296 Luciferase-like monooxygenase AP3564_02635 PF13460 NAD(P)H-binding AP3564_02650 PF10518 TAT (twin-arginine translocation) pathway signal sequence AP3564_02650 PF04261 Dyp-type peroxidase family AP3564_02655 PF09375 Imelysin AP3564_02660 PF00158 Sigma-54 interaction domain AP3564_02660 PF01590 GAF domain AP3564_02660 PF02954 Bacterial regulatory protein, Fis family AP3564_02665 PF00676 Dehydrogenase E1 component AP3564_02670 PF02780 Transketolase, C-terminal domain AP3564_02670 PF02779 Transketolase, pyrimidine binding domain AP3564_02675 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AP3564_02675 PF00364 Biotin-requiring enzyme AP3564_02675 PF02817 e3 binding domain AP3564_02680 PF00158 Sigma-54 interaction domain AP3564_02680 PF00072 Response regulator receiver domain AP3564_02680 PF02954 Bacterial regulatory protein, Fis family AP3564_02685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP3564_02685 PF00512 His Kinase A (phospho-acceptor) domain AP3564_02685 PF08448 PAS fold AP3564_02685 PF13188 PAS domain AP3564_02685 PF00072 Response regulator receiver domain AP3564_02695 PF00171 Aldehyde dehydrogenase family AP3564_02700 PF00107 Zinc-binding dehydrogenase AP3564_02700 PF08240 Alcohol dehydrogenase GroES-like domain AP3564_02705 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AP3564_02705 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AP3564_02710 PF08240 Alcohol dehydrogenase GroES-like domain AP3564_02715 PF07690 Major Facilitator Superfamily AP3564_02725 PF00455 DeoR C terminal sensor domain AP3564_02725 PF08220 DeoR-like helix-turn-helix domain AP3564_02730 PF03358 NADPH-dependent FMN reductase AP3564_02735 PF13649 Methyltransferase domain AP3564_02750 PF00291 Pyridoxal-phosphate dependent enzyme AP3564_02765 PF08331 Domain of unknown function (DUF1730) AP3564_02770 PF12671 Putative amidase domain AP3564_02775 PF00588 SpoU rRNA Methylase family AP3564_02780 PF00465 Iron-containing alcohol dehydrogenase AP3564_02785 PF06798 PrkA serine protein kinase C-terminal domain AP3564_02785 PF08298 PrkA AAA domain AP3564_02790 PF04285 Protein of unknown function (DUF444) AP3564_02795 PF02096 60Kd inner membrane protein AP3564_02805 PF02632 BioY family AP3564_02810 PF13193 AMP-binding enzyme C-terminal domain AP3564_02810 PF00501 AMP-binding enzyme AP3564_02815 PF00108 Thiolase, N-terminal domain AP3564_02815 PF02803 Thiolase, C-terminal domain AP3564_02820 PF09335 SNARE associated Golgi protein AP3564_02830 PF02525 Flavodoxin-like fold AP3564_02835 PF00248 Aldo/keto reductase family AP3564_02845 PF02600 Disulfide bond formation protein DsbB AP3564_02850 PF00571 CBS domain AP3564_02855 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AP3564_02855 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AP3564_02855 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AP3564_02855 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AP3564_02860 PF14148 YhdB-like protein AP3564_02865 PF02082 Transcriptional regulator AP3564_02870 PF00970 Oxidoreductase FAD-binding domain AP3564_02870 PF00042 Globin AP3564_02870 PF00175 Oxidoreductase NAD-binding domain AP3564_02875 PF04293 SpoVR like protein AP3564_02880 PF03741 Integral membrane protein TerC family AP3564_02900 PF01594 AI-2E family transporter AP3564_02910 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AP3564_02915 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AP3564_02925 PF00268 Ribonucleotide reductase, small chain AP3564_02930 PF00317 Ribonucleotide reductase, all-alpha domain AP3564_02930 PF02867 Ribonucleotide reductase, barrel domain AP3564_02930 PF03477 ATP cone domain AP3564_02935 PF00011 Hsp20/alpha crystallin family AP3564_02955 PF00005 ABC transporter AP3564_02955 PF12399 Branched-chain amino acid ATP-binding cassette transporter AP3564_02960 PF00005 ABC transporter AP3564_02970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP3564_02980 PF00269 Small, acid-soluble spore proteins, alpha/beta type AP3564_02995 PF14398 YheC/D like ATP-grasp AP3564_03000 PF14398 YheC/D like ATP-grasp AP3564_03005 PF14398 YheC/D like ATP-grasp AP3564_03015 PF04286 Protein of unknown function (DUF445) AP3564_03020 PF03323 Bacillus/Clostridium GerA spore germination protein AP3564_03035 PF05504 Spore germination B3/ GerAC like, C-terminal AP3564_03040 PF06133 Control of competence regulator ComK, YlbF/YmcA AP3564_03045 PF03449 Transcription elongation factor, N-terminal AP3564_03045 PF01272 Transcription elongation factor, GreA/GreB, C-term AP3564_03050 PF00480 ROK family AP3564_03050 PF01325 Iron dependent repressor, N-terminal DNA binding domain AP3564_03060 PF04055 Radical SAM superfamily AP3564_03075 PF00149 Calcineurin-like phosphoesterase AP3564_03080 PF13514 AAA domain AP3564_03085 PF01966 HD domain AP3564_03090 PF14147 Sporulation protein YhaL AP3564_03095 PF05698 Bacterial trigger factor protein (TF) C-terminus AP3564_03110 PF08963 Protein of unknown function (DUF1878) AP3564_03115 PF01047 MarR family AP3564_03120 PF12732 YtxH-like protein AP3564_03130 PF17099 Tryptophan transporter TrpP AP3564_03135 PF00266 Aminotransferase class-V AP3564_03140 PF01230 HIT domain AP3564_03145 PF05975 Bacterial ABC transporter protein EcsB AP3564_03150 PF00005 ABC transporter AP3564_03155 PF03992 Antibiotic biosynthesis monooxygenase AP3564_03160 PF00905 Penicillin binding protein transpeptidase domain AP3564_03160 PF00912 Transglycosylase AP3564_03165 PF01208 Uroporphyrinogen decarboxylase (URO-D) AP3564_03180 PF00356 Bacterial regulatory proteins, lacI family AP3564_03185 PF14149 YhfH-like protein AP3564_03190 PF12706 Beta-lactamase superfamily domain AP3564_03200 PF02653 Branched-chain amino acid transport system / permease component AP3564_03205 PF00005 ABC transporter AP3564_03210 PF07883 Cupin domain AP3564_03210 PF01381 Helix-turn-helix AP3564_03215 PF03591 AzlC protein AP3564_03225 PF16491 CAAX prenyl protease N-terminal, five membrane helices AP3564_03225 PF01435 Peptidase family M48 AP3564_03230 PF17854 FtsK alpha domain AP3564_03230 PF09397 Ftsk gamma domain AP3564_03230 PF01580 FtsK/SpoIIIE family AP3564_03235 PF08245 Mur ligase middle domain AP3564_03235 PF01225 Mur ligase family, catalytic domain AP3564_03235 PF02875 Mur ligase family, glutamate ligase domain AP3564_03240 PF02073 Thermophilic metalloprotease (M29) AP3564_03245 PF06103 Bacterial protein of unknown function (DUF948) AP3564_03260 PF00793 DAHP synthetase I family AP3564_03260 PF01817 Chorismate mutase type II AP3564_03265 PF00356 Bacterial regulatory proteins, lacI family AP3564_03270 PF00850 Histone deacetylase domain AP3564_03275 PF00571 CBS domain AP3564_03280 PF00583 Acetyltransferase (GNAT) family AP3564_03285 PF13193 AMP-binding enzyme C-terminal domain AP3564_03285 PF00501 AMP-binding enzyme AP3564_03290 PF00583 Acetyltransferase (GNAT) family AP3564_03295 PF00905 Penicillin binding protein transpeptidase domain AP3564_03295 PF00912 Transglycosylase AP3564_03300 PF00579 tRNA synthetases class I (W and Y) AP3564_03300 PF01479 S4 domain AP3564_03305 PF05593 RHS Repeat AP3564_03315 PF05593 RHS Repeat AP3564_03325 PF05593 RHS Repeat AP3564_03355 PF05593 RHS Repeat AP3564_03380 PF05593 RHS Repeat AP3564_03435 PF09299 Mu transposase, C-terminal AP3564_03435 PF00665 Integrase core domain AP3564_03515 PF01380 SIS domain AP3564_03515 PF01418 Helix-turn-helix domain, rpiR family AP3564_03525 PF00107 Zinc-binding dehydrogenase AP3564_03525 PF08240 Alcohol dehydrogenase GroES-like domain AP3564_03530 PF01791 DeoC/LacD family aldolase AP3564_03535 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AP3564_03535 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AP3564_03555 PF01969 Protein of unknown function DUF111 AP3564_03560 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AP3564_03560 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AP3564_03600 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AP3564_03605 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AP3564_03610 PF03480 Bacterial extracellular solute-binding protein, family 7 AP3564_03620 PF08240 Alcohol dehydrogenase GroES-like domain AP3564_03620 PF00107 Zinc-binding dehydrogenase AP3564_03625 PF01791 DeoC/LacD family aldolase AP3564_03630 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AP3564_03630 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AP3564_03640 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AP3564_03640 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AP3564_03650 PF04321 RmlD substrate binding domain AP3564_03655 PF16363 GDP-mannose 4,6 dehydratase AP3564_03660 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AP3564_03665 PF00483 Nucleotidyl transferase AP3564_03675 PF00535 Glycosyl transferase family 2 AP3564_03715 PF00107 Zinc-binding dehydrogenase AP3564_03715 PF08240 Alcohol dehydrogenase GroES-like domain AP3564_03725 PF16889 Heparinase II/III N-terminus AP3564_03725 PF07940 Heparinase II/III-like protein AP3564_03730 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AP3564_03730 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AP3564_03730 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AP3564_03735 PF02397 Bacterial sugar transferase AP3564_03740 PF00483 Nucleotidyl transferase AP3564_03750 PF13614 AAA domain AP3564_03755 PF02706 Chain length determinant protein AP3564_03755 PF13807 G-rich domain on putative tyrosine kinase AP3564_03760 PF04434 SWIM zinc finger AP3564_03765 PF00176 SNF2 family N-terminal domain AP3564_03765 PF00271 Helicase conserved C-terminal domain AP3564_03765 PF12419 SNF2 Helicase protein AP3564_03770 PF00436 Single-strand binding protein family AP3564_03780 PF01381 Helix-turn-helix AP3564_03785 PF14183 YwpF-like protein AP3564_03795 PF07977 FabA-like domain AP3564_03805 PF00460 Flagella basal body rod protein AP3564_03805 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AP3564_03810 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AP3564_03810 PF00460 Flagella basal body rod protein AP3564_03820 PF12116 Stage III sporulation protein D AP3564_03830 PF02626 Carboxyltransferase domain, subdomain A and B AP3564_03835 PF03746 LamB/YcsF family AP3564_03840 PF02682 Carboxyltransferase domain, subdomain C and D AP3564_03845 PF00583 Acetyltransferase (GNAT) family AP3564_03850 PF01551 Peptidase family M23 AP3564_03860 PF08486 Stage II sporulation protein AP3564_03865 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AP3564_03870 PF08680 TATA-box binding AP3564_03875 PF06612 Protein of unknown function (DUF1146) AP3564_03880 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AP3564_03880 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AP3564_03885 PF02874 ATP synthase alpha/beta family, beta-barrel domain AP3564_03885 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AP3564_03890 PF00231 ATP synthase AP3564_03895 PF02874 ATP synthase alpha/beta family, beta-barrel domain AP3564_03895 PF00306 ATP synthase alpha/beta chain, C terminal domain AP3564_03895 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AP3564_03900 PF00213 ATP synthase delta (OSCP) subunit AP3564_03905 PF00430 ATP synthase B/B' CF(0) AP3564_03910 PF00137 ATP synthase subunit C AP3564_03915 PF00119 ATP synthase A chain AP3564_03920 PF03899 ATP synthase I chain AP3564_03930 PF00082 Subtilase family AP3564_03930 PF02225 PA domain AP3564_03930 PF05922 Peptidase inhibitor I9 AP3564_03930 PF13860 FlgD Ig-like domain AP3564_03945 PF00464 Serine hydroxymethyltransferase AP3564_03950 PF04260 Protein of unknown function (DUF436) AP3564_03955 PF02502 Ribose/Galactose Isomerase AP3564_03960 PF00672 HAMP domain AP3564_03960 PF02743 Cache domain AP3564_03960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP3564_03965 PF01451 Low molecular weight phosphotyrosine protein phosphatase AP3564_03970 PF02659 Putative manganese efflux pump AP3564_03975 PF01300 Telomere recombination AP3564_03975 PF03481 Putative GTP-binding controlling metal-binding AP3564_03985 PF09551 Stage II sporulation protein R (spore_II_R) AP3564_03990 PF17827 PrmC N-terminal domain AP3564_03990 PF13847 Methyltransferase domain AP3564_03995 PF00472 RF-1 domain AP3564_03995 PF03462 PCRF domain AP3564_04000 PF13411 MerR HTH family regulatory protein AP3564_04010 PF00265 Thymidine kinase AP3564_04015 PF01197 Ribosomal protein L31 AP3564_04020 PF07498 Rho termination factor, N-terminal domain AP3564_04020 PF07497 Rho termination factor, RNA-binding domain AP3564_04020 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AP3564_04025 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AP3564_04030 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AP3564_04035 PF00923 Transaldolase/Fructose-6-phosphate aldolase AP3564_04040 PF01116 Fructose-bisphosphate aldolase class-II AP3564_04045 PF00072 Response regulator receiver domain AP3564_04050 PF10740 Domain of unknown function (DUF2529) AP3564_04055 PF06418 CTP synthase N-terminus AP3564_04055 PF00117 Glutamine amidotransferase class-I AP3564_04060 PF05066 HB1, ASXL, restriction endonuclease HTH domain AP3564_04065 PF13183 4Fe-4S dicluster domain AP3564_04065 PF02754 Cysteine-rich domain AP3564_04070 PF08281 Sigma-70, region 4 AP3564_04070 PF04542 Sigma-70 region 2 AP3564_04075 PF00750 tRNA synthetases class I (R) AP3564_04075 PF05746 DALR anticodon binding domain AP3564_04075 PF03485 Arginyl tRNA synthetase N terminal domain AP3564_04080 PF09148 Domain of unknown function (DUF1934) AP3564_04085 PF00491 Arginase family AP3564_04090 PF17284 Spermidine synthase tetramerisation domain AP3564_04095 PF00912 Transglycosylase AP3564_04095 PF00905 Penicillin binding protein transpeptidase domain AP3564_04100 PF03099 Biotin/lipoate A/B protein ligase family AP3564_04105 PF08000 Bacterial PH domain AP3564_04105 PF11724 YvbH-like oligomerisation region AP3564_04115 PF07293 Protein of unknown function (DUF1450) AP3564_04120 PF01966 HD domain AP3564_04130 PF02163 Peptidase family M50 AP3564_04135 PF08741 YwhD family AP3564_04140 PF01515 Phosphate acetyl/butaryl transferase AP3564_04150 PF07486 Cell Wall Hydrolase AP3564_04155 PF09671 Spore coat protein (Spore_GerQ) AP3564_04160 PF00115 Cytochrome C and Quinol oxidase polypeptide I AP3564_04165 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AP3564_04165 PF09125 Cytochrome C oxidase subunit II, transmembrane AP3564_04170 PF04241 Protein of unknown function (DUF423) AP3564_04175 PF17261 Family of unknown function (DUF5327) AP3564_04180 PF17284 Spermidine synthase tetramerisation domain AP3564_04200 PF03167 Uracil DNA glycosylase superfamily AP3564_04215 PF08361 MAATS-type transcriptional repressor, C-terminal region AP3564_04215 PF00440 Bacterial regulatory proteins, tetR family AP3564_04220 PF08543 Phosphomethylpyrimidine kinase AP3564_04225 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AP3564_04225 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain AP3564_04225 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AP3564_04230 PF03009 Glycerophosphoryl diester phosphodiesterase family AP3564_04240 PF12105 SpoU, rRNA methylase, C-terminal AP3564_04240 PF00588 SpoU rRNA Methylase family AP3564_04245 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AP3564_04250 PF00510 Cytochrome c oxidase subunit III AP3564_04255 PF00115 Cytochrome C and Quinol oxidase polypeptide I AP3564_04260 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AP3564_04265 PF00881 Nitroreductase family AP3564_04270 PF01717 Cobalamin-independent synthase, Catalytic domain AP3564_04270 PF08267 Cobalamin-independent synthase, N-terminal domain AP3564_04275 PF02581 Thiamine monophosphate synthase AP3564_04280 PF02110 Hydroxyethylthiazole kinase family AP3564_04285 PF00497 Bacterial extracellular solute-binding proteins, family 3 AP3564_04290 PF00528 Binding-protein-dependent transport system inner membrane component AP3564_04295 PF00005 ABC transporter AP3564_04310 PF13419 Haloacid dehalogenase-like hydrolase AP3564_04325 PF04264 YceI-like domain AP3564_04330 PF01717 Cobalamin-independent synthase, Catalytic domain AP3564_04340 PF00005 ABC transporter AP3564_04345 PF12399 Branched-chain amino acid ATP-binding cassette transporter AP3564_04345 PF00005 ABC transporter AP3564_04355 PF02653 Branched-chain amino acid transport system / permease component AP3564_04360 PF13458 Periplasmic binding protein AP3564_04370 PF04203 Sortase domain AP3564_04375 PF02817 e3 binding domain AP3564_04375 PF00364 Biotin-requiring enzyme AP3564_04375 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AP3564_04380 PF02779 Transketolase, pyrimidine binding domain AP3564_04380 PF02780 Transketolase, C-terminal domain AP3564_04385 PF00676 Dehydrogenase E1 component AP3564_04390 PF00158 Sigma-54 interaction domain AP3564_04390 PF02954 Bacterial regulatory protein, Fis family AP3564_04390 PF13426 PAS domain AP3564_04415 PF00528 Binding-protein-dependent transport system inner membrane component AP3564_04420 PF00528 Binding-protein-dependent transport system inner membrane component AP3564_04425 PF00005 ABC transporter AP3564_04435 PF00149 Calcineurin-like phosphoesterase AP3564_04435 PF02872 5'-nucleotidase, C-terminal domain AP3564_04450 PF00583 Acetyltransferase (GNAT) family AP3564_04455 PF00795 Carbon-nitrogen hydrolase AP3564_04455 PF00583 Acetyltransferase (GNAT) family AP3564_04460 PF00486 Transcriptional regulatory protein, C terminal AP3564_04460 PF00072 Response regulator receiver domain AP3564_04465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP3564_04470 PF00005 ABC transporter AP3564_04480 PF13460 NAD(P)H-binding AP3564_04485 PF02082 Transcriptional regulator AP3564_04490 PF00072 Response regulator receiver domain AP3564_04490 PF08664 YcbB domain AP3564_04495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP3564_04500 PF00375 Sodium:dicarboxylate symporter family AP3564_04505 PF00440 Bacterial regulatory proteins, tetR family AP3564_04515 PF00005 ABC transporter AP3564_04520 PF13454 FAD-NAD(P)-binding AP3564_04530 PF03061 Thioesterase superfamily AP3564_04540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP3564_04540 PF03466 LysR substrate binding domain AP3564_04570 PF13538 UvrD-like helicase C-terminal domain AP3564_04575 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AP3564_04575 PF00056 lactate/malate dehydrogenase, NAD binding domain AP3564_04585 PF00512 His Kinase A (phospho-acceptor) domain AP3564_04585 PF00989 PAS fold AP3564_04585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP3564_04585 PF16736 Single Cache-like AP3564_04605 PF11867 Domain of unknown function (DUF3387) AP3564_04605 PF18766 SWI2/SNF2 ATPase AP3564_04605 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AP3564_04610 PF01420 Type I restriction modification DNA specificity domain AP3564_04615 PF02384 N-6 DNA Methylase AP3564_04630 PF00455 DeoR C terminal sensor domain AP3564_04630 PF08220 DeoR-like helix-turn-helix domain AP3564_04640 PF01571 Aminomethyltransferase folate-binding domain AP3564_04640 PF08669 Glycine cleavage T-protein C-terminal barrel domain AP3564_04640 PF17806 Sarcosine oxidase A3 domain AP3564_04640 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP3564_04645 PF01266 FAD dependent oxidoreductase AP3564_04650 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AP3564_04650 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AP3564_04655 PF04346 Ethanolamine utilisation protein, EutH AP3564_04665 PF00455 DeoR C terminal sensor domain AP3564_04665 PF08220 DeoR-like helix-turn-helix domain AP3564_04685 PF01844 HNH endonuclease AP3564_04700 PF02590 Predicted SPOUT methyltransferase AP3564_04710 PF13180 PDZ domain AP3564_04715 PF00753 Metallo-beta-lactamase superfamily AP3564_04720 PF09648 YycH protein AP3564_04730 PF00672 HAMP domain AP3564_04730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP3564_04730 PF00512 His Kinase A (phospho-acceptor) domain AP3564_04730 PF13426 PAS domain AP3564_04735 PF00072 Response regulator receiver domain AP3564_04735 PF00486 Transcriptional regulatory protein, C terminal AP3564_04750 PF00709 Adenylosuccinate synthetase AP3564_04755 PF00772 DnaB-like helicase N terminal domain AP3564_04755 PF03796 DnaB-like helicase C terminal domain AP3564_04760 PF01281 Ribosomal protein L9, N-terminal domain AP3564_04760 PF03948 Ribosomal protein L9, C-terminal domain AP3564_04765 PF01368 DHH family AP3564_04765 PF02272 DHHA1 domain AP3564_04770 PF09991 Predicted membrane protein (DUF2232) AP3564_04775 PF01084 Ribosomal protein S18 AP3564_04780 PF00436 Single-strand binding protein family AP3564_04785 PF01250 Ribosomal protein S6 AP3564_04790 PF01926 50S ribosome-binding GTPase AP3564_04790 PF06071 Protein of unknown function (DUF933) AP3564_04795 PF06107 Bacterial protein of unknown function (DUF951) AP3564_04800 PF06866 Protein of unknown function (DUF1256) AP3564_04805 PF02195 ParB-like nuclease domain AP3564_04805 PF17762 HTH domain found in ParB protein AP3564_04810 PF13614 AAA domain AP3564_04820 PF02195 ParB-like nuclease domain AP3564_04820 PF17762 HTH domain found in ParB protein AP3564_04825 PF02527 rRNA small subunit methyltransferase G AP3564_04830 PF01134 Glucose inhibited division protein A AP3564_04830 PF13932 GidA associated domain AP3564_04835 PF01926 50S ribosome-binding GTPase AP3564_04835 PF12631 MnmE helical domain AP3564_04835 PF10396 GTP-binding protein TrmE N-terminus AP3564_04840 PF01424 R3H domain AP3564_04840 PF14804 Jag N-terminus AP3564_04845 PF02096 60Kd inner membrane protein AP3564_04850 PF00825 Ribonuclease P AP3564_04855 PF00468 Ribosomal protein L34 AP3564_04865 PF00308 Bacterial dnaA protein AP3564_04865 PF08299 Bacterial dnaA protein helix-turn-helix AP3564_04865 PF11638 DnaA N-terminal domain AP3564_04870 PF02767 DNA polymerase III beta subunit, central domain AP3564_04870 PF02768 DNA polymerase III beta subunit, C-terminal domain AP3564_04870 PF00712 DNA polymerase III beta subunit, N-terminal domain AP3564_04880 PF02463 RecF/RecN/SMC N terminal domain AP3564_04885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP3564_04885 PF00986 DNA gyrase B subunit, carboxyl terminus AP3564_04885 PF00204 DNA gyrase B AP3564_04885 PF01751 Toprim domain AP3564_04890 PF03989 DNA gyrase C-terminal domain, beta-propeller AP3564_04890 PF00521 DNA gyrase/topoisomerase IV, subunit A AP3564_04895 PF01966 HD domain AP3564_04895 PF00072 Response regulator receiver domain AP3564_04925 PF14175 YaaC-like Protein AP3564_04930 PF00478 IMP dehydrogenase / GMP reductase domain AP3564_04930 PF00571 CBS domain AP3564_04935 PF07943 Penicillin-binding protein 5, C-terminal domain AP3564_04935 PF00768 D-alanyl-D-alanine carboxypeptidase AP3564_04950 PF01680 SOR/SNZ family AP3564_04955 PF01174 SNO glutamine amidotransferase family AP3564_04960 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AP3564_04960 PF02403 Seryl-tRNA synthetase N-terminal domain AP3564_04965 PF01266 FAD dependent oxidoreductase AP3564_04985 PF01476 LysM domain AP3564_04985 PF00704 Glycosyl hydrolases family 18 AP3564_04990 PF14437 MafB19-like deaminase AP3564_05000 PF12169 DNA polymerase III subunits gamma and tau domain III AP3564_05005 PF02575 YbaB/EbfC DNA-binding family AP3564_05010 PF13662 Toprim domain AP3564_05010 PF02132 RecR protein AP3564_05015 PF10704 Protein of unknown function (DUF2508) AP3564_05020 PF07441 SigmaK-factor processing regulatory protein BofA AP3564_05040 PF10764 Inhibitor of sigma-G Gin AP3564_05045 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AP3564_05045 PF01276 Orn/Lys/Arg decarboxylase, major domain AP3564_05050 PF02223 Thymidylate kinase AP3564_05055 PF06153 Cyclic-di-AMP receptor AP3564_05060 PF03885 Protein of unknown function (DUF327) AP3564_05065 PF09115 DNA polymerase III, delta subunit, C terminal AP3564_05070 PF04468 PSP1 C-terminal conserved region AP3564_05075 PF06156 Initiation control protein YabA AP3564_05080 PF05175 Methyltransferase small domain AP3564_05085 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AP3564_05090 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AP3564_05090 PF18277 AbrB C-terminal domain AP3564_05095 PF09334 tRNA synthetases class I (M) AP3564_05095 PF08264 Anticodon-binding domain of tRNA AP3564_05095 PF01588 Putative tRNA binding domain AP3564_05100 PF01026 TatD related DNase AP3564_05105 PF03990 G5-linked-Ubiquitin-like domain AP3564_05105 PF07501 G5 domain AP3564_05105 PF06725 3D domain AP3564_05110 PF13662 Toprim domain AP3564_05110 PF13331 Domain of unknown function (DUF4093) AP3564_05115 PF00398 Ribosomal RNA adenine dimethylase AP3564_05120 PF05582 YabG peptidase U57 AP3564_05125 PF06257 Biofilm formation stimulator VEG AP3564_05130 PF00269 Small, acid-soluble spore proteins, alpha/beta type AP3564_05135 PF08544 GHMP kinases C terminal AP3564_05135 PF00288 GHMP kinases N terminal domain AP3564_05140 PF09182 Bacterial purine repressor, N-terminal AP3564_05140 PF00156 Phosphoribosyl transferase domain AP3564_05145 PF01042 Endoribonuclease L-PSP AP3564_05150 PF04026 SpoVG AP3564_05155 PF00483 Nucleotidyl transferase AP3564_05155 PF00132 Bacterial transferase hexapeptide (six repeats) AP3564_05160 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AP3564_05160 PF14572 Phosphoribosyl synthetase-associated domain AP3564_05165 PF01386 Ribosomal L25p family AP3564_05165 PF14693 Ribosomal protein TL5, C-terminal domain AP3564_05170 PF01195 Peptidyl-tRNA hydrolase AP3564_05175 PF10955 Protein of unknown function (DUF2757) AP3564_05180 PF00270 DEAD/DEAH box helicase AP3564_05180 PF02559 CarD-like/TRCF domain AP3564_05180 PF03461 TRCF domain AP3564_05180 PF17757 UvrB interaction domain AP3564_05180 PF00271 Helicase conserved C-terminal domain AP3564_05185 PF15714 Stage V sporulation protein T C-terminal, transcription factor AP3564_05185 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AP3564_05205 PF01385 Probable transposase AP3564_05205 PF12323 Helix-turn-helix domain AP3564_05205 PF07282 Putative transposase DNA-binding domain AP3564_05210 PF14667 Polysaccharide biosynthesis C-terminal domain AP3564_05210 PF01943 Polysaccharide biosynthesis protein AP3564_05215 PF03819 MazG nucleotide pyrophosphohydrolase domain AP3564_05215 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AP3564_05220 PF01479 S4 domain AP3564_05225 PF07873 YabP family AP3564_05230 PF09578 Spore cortex protein YabQ (Spore_YabQ) AP3564_05235 PF04977 Septum formation initiator AP3564_05240 PF00575 S1 RNA binding domain AP3564_05255 PF07228 Stage II sporulation protein E (SpoIIE) AP3564_05260 PF00092 von Willebrand factor type A domain AP3564_05265 PF00069 Protein kinase domain AP3564_05270 PF01171 PP-loop family AP3564_05270 PF11734 TilS substrate C-terminal domain AP3564_05270 PF09179 TilS substrate binding domain AP3564_05280 PF06480 FtsH Extracellular AP3564_05280 PF01434 Peptidase family M41 AP3564_05280 PF17862 AAA+ lid domain AP3564_05280 PF00004 ATPase family associated with various cellular activities (AAA) AP3564_05285 PF03309 Type III pantothenate kinase AP3564_05290 PF01430 Hsp33 protein AP3564_05295 PF13145 PPIC-type PPIASE domain AP3564_05300 PF00291 Pyridoxal-phosphate dependent enzyme AP3564_05305 PF00425 chorismate binding enzyme AP3564_05305 PF04715 Anthranilate synthase component I, N terminal region AP3564_05310 PF00117 Glutamine amidotransferase class-I AP3564_05315 PF01063 Amino-transferase class IV AP3564_05320 PF00809 Pterin binding enzyme AP3564_05325 PF02152 Dihydroneopterin aldolase AP3564_05330 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AP3564_05335 PF01381 Helix-turn-helix AP3564_05340 PF01207 Dihydrouridine synthase (Dus) AP3564_05345 PF00152 tRNA synthetases class II (D, K and N) AP3564_05345 PF01336 OB-fold nucleic acid binding domain AP3564_05350 PF01609 Transposase DDE domain AP3564_05440 PF01446 Replication protein AP3564_05450 PF00005 ABC transporter AP3564_05450 PF13732 Domain of unknown function (DUF4162) AP3564_05470 PF13005 zinc-finger binding domain of transposase IS66 AP3564_05470 PF13817 IS66 C-terminal element AP3564_05470 PF13007 Transposase C of IS166 homeodomain AP3564_05470 PF03050 Transposase IS66 family AP3564_05505 PF01478 Type IV leader peptidase family AP3564_05505 PF06750 Bacterial Peptidase A24 N-terminal domain AP3564_05530 PF00482 Type II secretion system (T2SS), protein F AP3564_05535 PF00437 Type II/IV secretion system protein AP3564_05540 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AP3564_05540 PF00437 Type II/IV secretion system protein AP3564_05565 PF02308 MgtC family AP3564_05570 PF05848 CtsR N-terminal HTH domain AP3564_05570 PF17727 CtsR C-terminal dimerization domain AP3564_05575 PF02151 UvrB/uvrC motif AP3564_05580 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain AP3564_05585 PF00004 ATPase family associated with various cellular activities (AAA) AP3564_05585 PF07724 AAA domain (Cdc48 subfamily) AP3564_05585 PF17871 AAA lid domain AP3564_05585 PF02861 Clp amino terminal domain, pathogenicity island component AP3564_05585 PF10431 C-terminal, D2-small domain, of ClpB protein AP3564_05590 PF18073 Rubredoxin metal binding domain AP3564_05595 PF10635 DisA bacterial checkpoint controller linker region AP3564_05595 PF02457 DisA bacterial checkpoint controller nucleotide-binding AP3564_05605 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AP3564_05610 PF02542 YgbB family AP3564_05615 PF00749 tRNA synthetases class I (E and Q), catalytic domain AP3564_05620 PF06426 Serine acetyltransferase, N-terminal AP3564_05620 PF00132 Bacterial transferase hexapeptide (six repeats) AP3564_05625 PF01406 tRNA synthetases class I (C) catalytic domain AP3564_05625 PF09190 DALR domain AP3564_05630 PF00636 Ribonuclease III domain AP3564_05635 PF00588 SpoU rRNA Methylase family AP3564_05635 PF08032 RNA 2'-O ribose methyltransferase substrate binding AP3564_05640 PF05991 YacP-like NYN domain AP3564_05645 PF08281 Sigma-70, region 4 AP3564_05645 PF04542 Sigma-70 region 2 AP3564_05650 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AP3564_05655 PF00467 KOW motif AP3564_05655 PF02357 Transcription termination factor nusG AP3564_05660 PF03946 Ribosomal protein L11, N-terminal domain AP3564_05660 PF00298 Ribosomal protein L11, RNA binding domain AP3564_05665 PF00687 Ribosomal protein L1p/L10e family AP3564_05670 PF00466 Ribosomal protein L10 AP3564_05675 PF16320 Ribosomal protein L7/L12 dimerisation domain AP3564_05675 PF00542 Ribosomal protein L7/L12 C-terminal domain AP3564_05680 PF05175 Methyltransferase small domain AP3564_05685 PF04561 RNA polymerase Rpb2, domain 2 AP3564_05685 PF04563 RNA polymerase beta subunit AP3564_05685 PF00562 RNA polymerase Rpb2, domain 6 AP3564_05685 PF04560 RNA polymerase Rpb2, domain 7 AP3564_05685 PF04565 RNA polymerase Rpb2, domain 3 AP3564_05685 PF10385 RNA polymerase beta subunit external 1 domain AP3564_05690 PF04997 RNA polymerase Rpb1, domain 1 AP3564_05690 PF00623 RNA polymerase Rpb1, domain 2 AP3564_05690 PF04998 RNA polymerase Rpb1, domain 5 AP3564_05690 PF04983 RNA polymerase Rpb1, domain 3 AP3564_05690 PF05000 RNA polymerase Rpb1, domain 4 AP3564_05695 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family AP3564_05700 PF00164 Ribosomal protein S12/S23 AP3564_05705 PF00177 Ribosomal protein S7p/S5e AP3564_05710 PF14492 Elongation Factor G, domain II AP3564_05710 PF00679 Elongation factor G C-terminus AP3564_05710 PF03144 Elongation factor Tu domain 2 AP3564_05710 PF03764 Elongation factor G, domain IV AP3564_05710 PF00009 Elongation factor Tu GTP binding domain AP3564_05715 PF03143 Elongation factor Tu C-terminal domain AP3564_05715 PF03144 Elongation factor Tu domain 2 AP3564_05715 PF00009 Elongation factor Tu GTP binding domain AP3564_05720 PF00338 Ribosomal protein S10p/S20e AP3564_05725 PF00297 Ribosomal protein L3 AP3564_05730 PF00573 Ribosomal protein L4/L1 family AP3564_05735 PF00276 Ribosomal protein L23 AP3564_05740 PF03947 Ribosomal Proteins L2, C-terminal domain AP3564_05740 PF00181 Ribosomal Proteins L2, RNA binding domain AP3564_05745 PF00203 Ribosomal protein S19 AP3564_05750 PF00237 Ribosomal protein L22p/L17e AP3564_05755 PF00189 Ribosomal protein S3, C-terminal domain AP3564_05755 PF07650 KH domain AP3564_05760 PF00252 Ribosomal protein L16p/L10e AP3564_05765 PF00831 Ribosomal L29 protein AP3564_05770 PF00366 Ribosomal protein S17 AP3564_05775 PF00238 Ribosomal protein L14p/L23e AP3564_05780 PF00467 KOW motif AP3564_05780 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AP3564_05785 PF00673 ribosomal L5P family C-terminus AP3564_05785 PF00281 Ribosomal protein L5 AP3564_05790 PF00253 Ribosomal protein S14p/S29e AP3564_05795 PF00410 Ribosomal protein S8 AP3564_05800 PF00347 Ribosomal protein L6 AP3564_05805 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AP3564_05810 PF03719 Ribosomal protein S5, C-terminal domain AP3564_05810 PF00333 Ribosomal protein S5, N-terminal domain AP3564_05815 PF00327 Ribosomal protein L30p/L7e AP3564_05820 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AP3564_05825 PF00344 SecY translocase AP3564_05830 PF05191 Adenylate kinase, active site lid AP3564_05835 PF00557 Metallopeptidase family M24 AP3564_05845 PF01176 Translation initiation factor 1A / IF-1 AP3564_05850 PF00444 Ribosomal protein L36 AP3564_05855 PF00416 Ribosomal protein S13/S18 AP3564_05860 PF00411 Ribosomal protein S11 AP3564_05865 PF01000 RNA polymerase Rpb3/RpoA insert domain AP3564_05865 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AP3564_05865 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AP3564_05870 PF01196 Ribosomal protein L17 AP3564_05875 PF00005 ABC transporter AP3564_05880 PF00005 ABC transporter AP3564_05885 PF02361 Cobalt transport protein AP3564_05890 PF01416 tRNA pseudouridine synthase AP3564_05895 PF00572 Ribosomal protein L13 AP3564_05900 PF00380 Ribosomal protein S9/S16 AP3564_05920 PF01609 Transposase DDE domain AP3564_05925 PF10460 Peptidase M30 AP3564_05930 PF10460 Peptidase M30 AP3564_05935 PF01520 N-acetylmuramoyl-L-alanine amidase AP3564_05940 PF10609 NUBPL iron-transfer P-loop NTPase AP3564_05945 PF17898 Spore germination GerD central core domain AP3564_05950 PF14089 KinB-signalling pathway activation in sporulation AP3564_05960 PF01522 Polysaccharide deacetylase AP3564_06040 PF07739 TipAS antibiotic-recognition domain AP3564_06040 PF13411 MerR HTH family regulatory protein AP3564_06045 PF04542 Sigma-70 region 2 AP3564_06045 PF08281 Sigma-70, region 4 AP3564_06050 PF13490 Putative zinc-finger AP3564_06055 PF02457 DisA bacterial checkpoint controller nucleotide-binding AP3564_06060 PF07949 YbbR-like protein AP3564_06065 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AP3564_06065 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AP3564_06065 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AP3564_06065 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AP3564_06070 PF01380 SIS domain AP3564_06080 PF13411 MerR HTH family regulatory protein AP3564_06085 PF01595 Cyclin M transmembrane N-terminal domain AP3564_06085 PF00571 CBS domain AP3564_06085 PF03471 Transporter associated domain AP3564_06110 PF00296 Luciferase-like monooxygenase AP3564_06115 PF08669 Glycine cleavage T-protein C-terminal barrel domain AP3564_06115 PF01571 Aminomethyltransferase folate-binding domain AP3564_06115 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP3564_06115 PF17806 Sarcosine oxidase A3 domain AP3564_06135 PF00356 Bacterial regulatory proteins, lacI family AP3564_06140 PF00294 pfkB family carbohydrate kinase AP3564_06145 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AP3564_06150 PF01380 SIS domain AP3564_06155 PF02615 Malate/L-lactate dehydrogenase AP3564_06160 PF03480 Bacterial extracellular solute-binding protein, family 7 AP3564_06170 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AP3564_06175 PF00107 Zinc-binding dehydrogenase AP3564_06175 PF08240 Alcohol dehydrogenase GroES-like domain AP3564_06180 PF01081 KDPG and KHG aldolase AP3564_06185 PF03786 D-mannonate dehydratase (UxuA) AP3564_06190 PF00106 short chain dehydrogenase AP3564_06205 PF13333 Integrase core domain AP3564_06205 PF00665 Integrase core domain AP3564_06205 PF13276 HTH-like domain AP3564_06235 PF00324 Amino acid permease AP3564_06245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP3564_06245 PF03466 LysR substrate binding domain AP3564_06250 PF03060 Nitronate monooxygenase AP3564_06265 PF01565 FAD binding domain AP3564_06265 PF02913 FAD linked oxidases, C-terminal domain AP3564_06270 PF02754 Cysteine-rich domain AP3564_06270 PF13183 4Fe-4S dicluster domain AP3564_06275 PF01565 FAD binding domain AP3564_06275 PF02913 FAD linked oxidases, C-terminal domain AP3564_06280 PF01274 Malate synthase AP3564_06290 PF01614 Bacterial transcriptional regulator AP3564_06290 PF09339 IclR helix-turn-helix domain AP3564_06295 PF02652 L-lactate permease AP3564_06300 PF02583 Metal-sensitive transcriptional repressor AP3564_06305 PF01554 MatE AP3564_06315 PF00528 Binding-protein-dependent transport system inner membrane component AP3564_06320 PF00005 ABC transporter AP3564_06340 PF00893 Small Multidrug Resistance protein AP3564_06345 PF00893 Small Multidrug Resistance protein AP3564_06355 PF06134 L-rhamnose isomerase (RhaA) AP3564_06360 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AP3564_06360 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AP3564_06365 PF00300 Histidine phosphatase superfamily (branch 1) AP3564_06370 PF13407 Periplasmic binding protein domain AP3564_06375 PF06580 Histidine kinase AP3564_06375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP3564_06375 PF00672 HAMP domain AP3564_06375 PF02743 Cache domain AP3564_06380 PF12833 Helix-turn-helix domain AP3564_06385 PF00834 Ribulose-phosphate 3 epimerase family AP3564_06390 PF00294 pfkB family carbohydrate kinase AP3564_06395 PF00005 ABC transporter AP3564_06400 PF02653 Branched-chain amino acid transport system / permease component AP3564_06405 PF02653 Branched-chain amino acid transport system / permease component AP3564_06410 PF13407 Periplasmic binding protein domain AP3564_06415 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AP3564_06415 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AP3564_06440 PF00005 ABC transporter AP3564_06445 PF02517 CPBP intramembrane metalloprotease AP3564_06450 PF13186 Iron-sulfur cluster-binding domain AP3564_06450 PF04055 Radical SAM superfamily AP3564_06460 PF00155 Aminotransferase class I and II AP3564_06460 PF00392 Bacterial regulatory proteins, gntR family AP3564_06465 PF07690 Major Facilitator Superfamily AP3564_06475 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AP3564_06490 PF00483 Nucleotidyl transferase AP3564_06510 PF00933 Glycosyl hydrolase family 3 N terminal domain AP3564_06525 PF05525 Branched-chain amino acid transport protein AP3564_06540 PF00296 Luciferase-like monooxygenase AP3564_06545 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AP3564_06545 PF01871 AMMECR1 AP3564_06550 PF01361 Tautomerase enzyme AP3564_06560 PF00682 HMGL-like AP3564_06560 PF07836 DmpG-like communication domain AP3564_06565 PF01118 Semialdehyde dehydrogenase, NAD binding domain AP3564_06565 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation AP3564_06570 PF01557 Fumarylacetoacetate (FAA) hydrolase family AP3564_06575 PF00171 Aldehyde dehydrogenase family AP3564_06580 PF01614 Bacterial transcriptional regulator AP3564_06580 PF09339 IclR helix-turn-helix domain AP3564_06590 PF00459 Inositol monophosphatase family AP3564_06595 PF00392 Bacterial regulatory proteins, gntR family AP3564_06595 PF07729 FCD domain AP3564_06600 PF02515 CoA-transferase family III AP3564_06615 PF00682 HMGL-like AP3564_06635 PF01965 DJ-1/PfpI family AP3564_06645 PF00296 Luciferase-like monooxygenase AP3564_06650 PF13460 NAD(P)H-binding AP3564_06655 PF07690 Major Facilitator Superfamily AP3564_06675 PF07690 Major Facilitator Superfamily AP3564_06685 PF00528 Binding-protein-dependent transport system inner membrane component AP3564_06690 PF00528 Binding-protein-dependent transport system inner membrane component AP3564_06695 PF13416 Bacterial extracellular solute-binding protein AP3564_06700 PF03009 Glycerophosphoryl diester phosphodiesterase family AP3564_06705 PF00486 Transcriptional regulatory protein, C terminal AP3564_06705 PF00072 Response regulator receiver domain AP3564_06710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP3564_06710 PF00512 His Kinase A (phospho-acceptor) domain AP3564_06710 PF00672 HAMP domain AP3564_06715 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AP3564_06720 PF05504 Spore germination B3/ GerAC like, C-terminal AP3564_06730 PF01645 Conserved region in glutamate synthase AP3564_06735 PF02915 Rubrerythrin AP3564_06740 PF01063 Amino-transferase class IV AP3564_06750 PF00085 Thioredoxin AP3564_06755 PF07478 D-ala D-ala ligase C-terminus AP3564_06755 PF01820 D-ala D-ala ligase N-terminus AP3564_06760 PF01225 Mur ligase family, catalytic domain AP3564_06760 PF02875 Mur ligase family, glutamate ligase domain AP3564_06760 PF08245 Mur ligase middle domain AP3564_06765 PF00271 Helicase conserved C-terminal domain AP3564_06765 PF00270 DEAD/DEAH box helicase AP3564_06770 PF03703 Bacterial PH domain AP3564_06775 PF03703 Bacterial PH domain AP3564_06780 PF01694 Rhomboid family AP3564_06785 PF01648 4'-phosphopantetheinyl transferase superfamily AP3564_06795 PF00842 Alanine racemase, C-terminal domain AP3564_06795 PF01168 Alanine racemase, N-terminal domain AP3564_06800 PF01402 Ribbon-helix-helix protein, copG family AP3564_06805 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system AP3564_06810 PF01609 Transposase DDE domain AP3564_06815 PF01740 STAS domain AP3564_06815 PF08678 Rsbr N terminal AP3564_06820 PF01740 STAS domain AP3564_06825 PF13581 Histidine kinase-like ATPase domain AP3564_06830 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain AP3564_06830 PF07228 Stage II sporulation protein E (SpoIIE) AP3564_06835 PF01740 STAS domain AP3564_06840 PF13581 Histidine kinase-like ATPase domain AP3564_06845 PF04545 Sigma-70, region 4 AP3564_06845 PF04542 Sigma-70 region 2 AP3564_06845 PF04539 Sigma-70 region 3 AP3564_06850 PF07228 Stage II sporulation protein E (SpoIIE) AP3564_06855 PF17674 HHH domain AP3564_06855 PF16921 Tex protein YqgF-like domain AP3564_06855 PF00575 S1 RNA binding domain AP3564_06855 PF09371 Tex-like protein N-terminal domain AP3564_06860 PF10263 SprT-like family AP3564_06940 PF02769 AIR synthase related protein, C-terminal domain AP3564_06940 PF00586 AIR synthase related protein, N-terminal domain AP3564_06945 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AP3564_06950 PF00814 Glycoprotease family AP3564_06955 PF00583 Acetyltransferase (GNAT) family AP3564_06960 PF00814 Glycoprotease family AP3564_06965 PF12848 ABC transporter AP3564_06965 PF16326 ABC transporter C-terminal domain AP3564_06965 PF00005 ABC transporter AP3564_06970 PF02629 CoA binding domain AP3564_06970 PF06971 Putative DNA-binding protein N-terminus AP3564_06975 PF02416 mttA/Hcf106 family AP3564_06980 PF00902 Sec-independent protein translocase protein (TatC) AP3564_06990 PF02517 CPBP intramembrane metalloprotease AP3564_06995 PF00166 Chaperonin 10 Kd subunit AP3564_07000 PF00118 TCP-1/cpn60 chaperonin family AP3564_07005 PF05675 Protein of unknown function (DUF817) AP3564_07055 PF01435 Peptidase family M48 AP3564_07075 PF00005 ABC transporter AP3564_07105 PF08220 DeoR-like helix-turn-helix domain AP3564_07105 PF00455 DeoR C terminal sensor domain AP3564_07110 PF00171 Aldehyde dehydrogenase family AP3564_07115 PF04962 KduI/IolB family AP3564_07120 PF00294 pfkB family carbohydrate kinase AP3564_07125 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AP3564_07125 PF00205 Thiamine pyrophosphate enzyme, central domain AP3564_07125 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AP3564_07130 PF01261 Xylose isomerase-like TIM barrel AP3564_07135 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AP3564_07135 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AP3564_07140 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AP3564_07140 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AP3564_07145 PF00005 ABC transporter AP3564_07150 PF02653 Branched-chain amino acid transport system / permease component AP3564_07155 PF13407 Periplasmic binding protein domain AP3564_07160 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AP3564_07160 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AP3564_07165 PF01116 Fructose-bisphosphate aldolase class-II AP3564_07175 PF13183 4Fe-4S dicluster domain AP3564_07175 PF02754 Cysteine-rich domain AP3564_07180 PF01565 FAD binding domain AP3564_07180 PF02913 FAD linked oxidases, C-terminal domain AP3564_07185 PF00392 Bacterial regulatory proteins, gntR family AP3564_07185 PF07729 FCD domain AP3564_07190 PF07690 Major Facilitator Superfamily AP3564_07195 PF07503 HypF finger AP3564_07195 PF00708 Acylphosphatase AP3564_07195 PF17788 HypF Kae1-like domain AP3564_07195 PF01300 Telomere recombination AP3564_07210 PF01609 Transposase DDE domain AP3564_07215 PF01566 Natural resistance-associated macrophage protein AP3564_07220 PF03746 LamB/YcsF family AP3564_07225 PF02626 Carboxyltransferase domain, subdomain A and B AP3564_07230 PF02682 Carboxyltransferase domain, subdomain C and D AP3564_07235 PF09339 IclR helix-turn-helix domain AP3564_07235 PF01614 Bacterial transcriptional regulator AP3564_07260 PF07286 Protein of unknown function (DUF1445) AP3564_07265 PF01232 Mannitol dehydrogenase Rossmann domain AP3564_07265 PF08125 Mannitol dehydrogenase C-terminal domain AP3564_07285 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AP3564_07290 PF05043 Mga helix-turn-helix domain AP3564_07290 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AP3564_07290 PF08279 HTH domain AP3564_07290 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AP3564_07290 PF00874 PRD domain AP3564_07315 PF00005 ABC transporter AP3564_07330 PF00005 ABC transporter AP3564_07340 PF00892 EamA-like transporter family AP3564_07360 PF06463 Molybdenum Cofactor Synthesis C AP3564_07360 PF04055 Radical SAM superfamily AP3564_07365 PF00994 Probable molybdopterin binding domain AP3564_07365 PF03453 MoeA N-terminal region (domain I and II) AP3564_07365 PF03454 MoeA C-terminal region (domain IV) AP3564_07375 PF01297 Zinc-uptake complex component A periplasmic AP3564_07380 PF00005 ABC transporter AP3564_07385 PF00950 ABC 3 transport family AP3564_07390 PF00950 ABC 3 transport family AP3564_07395 PF02742 Iron dependent repressor, metal binding and dimerisation domain AP3564_07395 PF01325 Iron dependent repressor, N-terminal DNA binding domain AP3564_07405 PF04203 Sortase domain AP3564_07410 PF00324 Amino acid permease AP3564_07415 PF00912 Transglycosylase AP3564_07415 PF00905 Penicillin binding protein transpeptidase domain AP3564_07420 PF12389 Camelysin metallo-endopeptidase AP3564_07440 PF08671 Anti-repressor SinI AP3564_07440 PF01381 Helix-turn-helix AP3564_07465 PF03608 PTS system enzyme II sorbitol-specific factor AP3564_07470 PF03612 Sorbitol phosphotransferase enzyme II N-terminus AP3564_07470 PF07663 Sorbitol phosphotransferase enzyme II C-terminus AP3564_07475 PF03829 PTS system glucitol/sorbitol-specific IIA component AP3564_07480 PF04198 Putative sugar-binding domain AP3564_07485 PF00676 Dehydrogenase E1 component AP3564_07490 PF02779 Transketolase, pyrimidine binding domain AP3564_07490 PF00364 Biotin-requiring enzyme AP3564_07490 PF02780 Transketolase, C-terminal domain AP3564_07495 PF02817 e3 binding domain AP3564_07495 PF00364 Biotin-requiring enzyme AP3564_07495 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AP3564_07500 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP3564_07500 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AP3564_07505 PF04198 Putative sugar-binding domain AP3564_07510 PF04703 FaeA-like protein AP3564_07510 PF00072 Response regulator receiver domain AP3564_07515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP3564_07515 PF17203 Single cache domain 3 AP3564_07515 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AP3564_07520 PF03480 Bacterial extracellular solute-binding protein, family 7 AP3564_07525 PF00375 Sodium:dicarboxylate symporter family AP3564_07530 PF01238 Phosphomannose isomerase type I AP3564_07545 PF03816 Cell envelope-related transcriptional attenuator domain AP3564_07555 PF02350 UDP-N-acetylglucosamine 2-epimerase AP3564_07560 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AP3564_07560 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AP3564_07560 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AP3564_07565 PF03808 Glycosyl transferase WecB/TagA/CpsF family AP3564_07575 PF00535 Glycosyl transferase family 2 AP3564_07585 PF00892 EamA-like transporter family AP3564_07605 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AP3564_07605 PF08239 Bacterial SH3 domain AP3564_07605 PF05036 Sporulation related domain AP3564_07610 PF03023 Lipid II flippase MurJ AP3564_07615 PF00953 Glycosyl transferase family 4 AP3564_07620 PF13439 Glycosyltransferase Family 4 AP3564_07620 PF00534 Glycosyl transferases group 1 AP3564_07625 PF00483 Nucleotidyl transferase AP3564_07630 PF00953 Glycosyl transferase family 4 AP3564_07635 PF03816 Cell envelope-related transcriptional attenuator domain AP3564_07640 PF01205 Uncharacterized protein family UPF0029 AP3564_07640 PF09186 Domain of unknown function (DUF1949) AP3564_07645 PF05384 Sensor protein DegS AP3564_07645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP3564_07645 PF07730 Histidine kinase AP3564_07650 PF00072 Response regulator receiver domain AP3564_07650 PF00196 Bacterial regulatory proteins, luxR family AP3564_07655 PF02645 Uncharacterised protein, DegV family COG1307 AP3564_07660 PF04851 Type III restriction enzyme, res subunit AP3564_07660 PF00271 Helicase conserved C-terminal domain AP3564_07665 PF10719 Late competence development protein ComFB AP3564_07690 PF00460 Flagella basal body rod protein AP3564_07690 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AP3564_07695 PF00700 Bacterial flagellin C-terminal helical region AP3564_07695 PF00669 Bacterial flagellin N-terminal helical region AP3564_07705 PF02623 FliW protein AP3564_07710 PF02599 Global regulator protein family AP3564_07715 PF00669 Bacterial flagellin N-terminal helical region AP3564_07715 PF00700 Bacterial flagellin C-terminal helical region AP3564_07735 PF01370 NAD dependent epimerase/dehydratase family AP3564_07740 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AP3564_07745 PF02350 UDP-N-acetylglucosamine 2-epimerase AP3564_07750 PF08666 SAF domain AP3564_07750 PF03102 NeuB family AP3564_07760 PF00483 Nucleotidyl transferase AP3564_07765 PF02348 Cytidylyltransferase AP3564_07765 PF13472 GDSL-like Lipase/Acylhydrolase family AP3564_07770 PF01609 Transposase DDE domain AP3564_07780 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system AP3564_07800 PF00107 Zinc-binding dehydrogenase AP3564_07800 PF08240 Alcohol dehydrogenase GroES-like domain AP3564_07805 PF08361 MAATS-type transcriptional repressor, C-terminal region AP3564_07805 PF00440 Bacterial regulatory proteins, tetR family AP3564_07815 PF00440 Bacterial regulatory proteins, tetR family AP3564_07820 PF06725 3D domain AP3564_07820 PF01476 LysM domain AP3564_07830 PF01027 Inhibitor of apoptosis-promoting Bax1 AP3564_07835 PF00158 Sigma-54 interaction domain AP3564_07835 PF00989 PAS fold AP3564_07835 PF02954 Bacterial regulatory protein, Fis family AP3564_07840 PF00465 Iron-containing alcohol dehydrogenase AP3564_07850 PF00171 Aldehyde dehydrogenase family AP3564_07855 PF07690 Major Facilitator Superfamily AP3564_07860 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AP3564_07860 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AP3564_07865 PF03123 CAT RNA binding domain AP3564_07865 PF00874 PRD domain AP3564_07870 PF00232 Glycosyl hydrolase family 1 AP3564_07875 PF00232 Glycosyl hydrolase family 1 AP3564_07880 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AP3564_07880 PF00367 phosphotransferase system, EIIB AP3564_07880 PF02378 Phosphotransferase system, EIIC AP3564_07885 PF09084 NMT1/THI5 like AP3564_07890 PF00528 Binding-protein-dependent transport system inner membrane component AP3564_07895 PF00005 ABC transporter AP3564_07900 PF00672 HAMP domain AP3564_07900 PF05227 CHASE3 domain AP3564_07900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP3564_07910 PF09347 Domain of unknown function (DUF1989) AP3564_07915 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AP3564_07915 PF00289 Biotin carboxylase, N-terminal domain AP3564_07915 PF02785 Biotin carboxylase C-terminal domain AP3564_07920 PF01425 Amidase AP3564_07925 PF02653 Branched-chain amino acid transport system / permease component AP3564_07930 PF13407 Periplasmic binding protein domain AP3564_07945 PF01791 DeoC/LacD family aldolase AP3564_07955 PF00465 Iron-containing alcohol dehydrogenase AP3564_07960 PF00202 Aminotransferase class-III AP3564_07970 PF17853 GGDEF-like domain AP3564_07970 PF13556 PucR C-terminal helix-turn-helix domain AP3564_07975 PF07687 Peptidase dimerisation domain AP3564_07975 PF01546 Peptidase family M20/M25/M40 AP3564_07980 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AP3564_07980 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP3564_07985 PF01180 Dihydroorotate dehydrogenase AP3564_07990 PF01979 Amidohydrolase family AP3564_07995 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AP3564_08005 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP3564_08015 PF00082 Subtilase family AP3564_08040 PF00005 ABC transporter AP3564_08040 PF13732 Domain of unknown function (DUF4162) AP3564_08050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP3564_08050 PF00672 HAMP domain AP3564_08050 PF02743 Cache domain AP3564_08055 PF00596 Class II Aldolase and Adducin N-terminal domain AP3564_08060 PF08220 DeoR-like helix-turn-helix domain AP3564_08060 PF00455 DeoR C terminal sensor domain AP3564_08065 PF05025 RbsD / FucU transport protein family AP3564_08070 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AP3564_08070 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AP3564_08075 PF00923 Transaldolase/Fructose-6-phosphate aldolase AP3564_08080 PF00005 ABC transporter AP3564_08105 PF00596 Class II Aldolase and Adducin N-terminal domain AP3564_08110 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AP3564_08110 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AP3564_08115 PF07881 L-fucose isomerase, first N-terminal domain AP3564_08115 PF07882 L-fucose isomerase, second N-terminal domain AP3564_08115 PF02952 L-fucose isomerase, C-terminal domain AP3564_08120 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AP3564_08120 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AP3564_08125 PF00108 Thiolase, N-terminal domain AP3564_08125 PF02803 Thiolase, C-terminal domain AP3564_08130 PF01144 Coenzyme A transferase AP3564_08135 PF01144 Coenzyme A transferase AP3564_08140 PF03466 LysR substrate binding domain AP3564_08140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP3564_08145 PF05378 Hydantoinase/oxoprolinase N-terminal region AP3564_08145 PF01968 Hydantoinase/oxoprolinase AP3564_08150 PF02538 Hydantoinase B/oxoprolinase AP3564_08155 PF08882 Acetone carboxylase gamma subunit AP3564_08160 PF02954 Bacterial regulatory protein, Fis family AP3564_08160 PF00158 Sigma-54 interaction domain AP3564_08160 PF13426 PAS domain AP3564_08170 PF07730 Histidine kinase AP3564_08175 PF00196 Bacterial regulatory proteins, luxR family AP3564_08175 PF00072 Response regulator receiver domain AP3564_08180 PF00005 ABC transporter AP3564_08195 PF00664 ABC transporter transmembrane region AP3564_08195 PF00005 ABC transporter AP3564_08205 PF03737 Aldolase/RraA AP3564_08210 PF08241 Methyltransferase domain AP3564_08220 PF03734 L,D-transpeptidase catalytic domain AP3564_08220 PF01476 LysM domain AP3564_08225 PF01661 Macro domain AP3564_08230 PF00005 ABC transporter AP3564_08235 PF04073 Aminoacyl-tRNA editing domain AP3564_08245 PF03109 ABC1 family AP3564_08250 PF01501 Glycosyl transferase family 8 AP3564_08250 PF08437 Glycosyl transferase family 8 C-terminal AP3564_08265 PF17853 GGDEF-like domain AP3564_08265 PF07905 Purine catabolism regulatory protein-like family AP3564_08265 PF13556 PucR C-terminal helix-turn-helix domain AP3564_08270 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AP3564_08270 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AP3564_08275 PF00378 Enoyl-CoA hydratase/isomerase AP3564_08280 PF13193 AMP-binding enzyme C-terminal domain AP3564_08280 PF00501 AMP-binding enzyme AP3564_08290 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AP3564_08290 PF02770 Acyl-CoA dehydrogenase, middle domain AP3564_08290 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AP3564_08300 PF01494 FAD binding domain AP3564_08310 PF00501 AMP-binding enzyme AP3564_08310 PF14535 AMP-binding enzyme C-terminal domain AP3564_08315 PF09339 IclR helix-turn-helix domain AP3564_08315 PF01614 Bacterial transcriptional regulator AP3564_08325 PF01557 Fumarylacetoacetate (FAA) hydrolase family AP3564_08335 PF07883 Cupin domain AP3564_08350 PF03646 FlaG protein AP3564_08355 PF07196 Flagellin hook IN motif AP3564_08355 PF07195 Flagellar hook-associated protein 2 C-terminus AP3564_08355 PF02465 Flagellar hook-associated protein 2 N-terminus AP3564_08360 PF02561 Flagellar protein FliS AP3564_08370 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus AP3564_08370 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AP3564_08375 PF01043 SecA preprotein cross-linking domain AP3564_08375 PF02810 SEC-C motif AP3564_08375 PF07517 SecA DEAD-like domain AP3564_08375 PF07516 SecA Wing and Scaffold domain AP3564_08380 PF00472 RF-1 domain AP3564_08380 PF03462 PCRF domain AP3564_08385 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AP3564_08390 PF00005 ABC transporter AP3564_08395 PF02687 FtsX-like permease family AP3564_08395 PF18075 FtsX extracellular domain AP3564_08400 PF01551 Peptidase family M23 AP3564_08400 PF08525 Opacity-associated protein A N-terminal motif AP3564_08400 PF01476 LysM domain AP3564_08405 PF03572 Peptidase family S41 AP3564_08405 PF17820 PDZ domain AP3564_08405 PF01471 Putative peptidoglycan binding domain AP3564_08410 PF17820 PDZ domain AP3564_08420 PF16916 Dimerisation domain of Zinc Transporter AP3564_08420 PF01545 Cation efflux family AP3564_08425 PF01022 Bacterial regulatory protein, arsR family AP3564_08440 PF00403 Heavy-metal-associated domain AP3564_08450 PF12323 Helix-turn-helix domain AP3564_08450 PF01385 Probable transposase AP3564_08450 PF07282 Putative transposase DNA-binding domain AP3564_08455 PF00480 ROK family AP3564_08465 PF02151 UvrB/uvrC motif AP3564_08465 PF04851 Type III restriction enzyme, res subunit AP3564_08465 PF00271 Helicase conserved C-terminal domain AP3564_08465 PF17757 UvrB interaction domain AP3564_08465 PF12344 Ultra-violet resistance protein B AP3564_08470 PF17760 UvrA interaction domain AP3564_08470 PF17755 UvrA DNA-binding domain AP3564_08470 PF00005 ABC transporter AP3564_08475 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AP3564_08475 PF02770 Acyl-CoA dehydrogenase, middle domain AP3564_08475 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AP3564_08485 PF01464 Transglycosylase SLT domain AP3564_08485 PF00497 Bacterial extracellular solute-binding proteins, family 3 AP3564_08490 PF00528 Binding-protein-dependent transport system inner membrane component AP3564_08495 PF00528 Binding-protein-dependent transport system inner membrane component AP3564_08505 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV AP3564_08510 PF00149 Calcineurin-like phosphoesterase AP3564_08515 PF07475 HPr Serine kinase C-terminal domain AP3564_08515 PF02603 HPr Serine kinase N terminus AP3564_08520 PF01790 Prolipoprotein diacylglyceryl transferase AP3564_08525 PF07670 Nucleoside recognition AP3564_08530 PF13419 Haloacid dehalogenase-like hydrolase AP3564_08535 PF14602 Hexapeptide repeat of succinyl-transferase AP3564_08540 PF13393 Histidyl-tRNA synthetase AP3564_08545 PF01634 ATP phosphoribosyltransferase AP3564_08550 PF00815 Histidinol dehydrogenase AP3564_08555 PF00475 Imidazoleglycerol-phosphate dehydratase AP3564_08560 PF00117 Glutamine amidotransferase class-I AP3564_08565 PF00977 Histidine biosynthesis protein AP3564_08570 PF00977 Histidine biosynthesis protein AP3564_08575 PF01502 Phosphoribosyl-AMP cyclohydrolase AP3564_08575 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AP3564_08585 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP3564_08590 PF00293 NUDIX domain AP3564_08595 PF03668 P-loop ATPase protein family AP3564_08600 PF01933 Uncharacterised protein family UPF0052 AP3564_08605 PF10298 WhiA N-terminal LAGLIDADG-like domain AP3564_08605 PF02650 WhiA C-terminal HTH domain AP3564_08605 PF14527 WhiA LAGLIDADG-like domain AP3564_08610 PF00381 PTS HPr component phosphorylation site AP3564_08615 PF00574 Clp protease AP3564_08630 PF04397 LytTr DNA-binding domain AP3564_08630 PF00072 Response regulator receiver domain AP3564_08635 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AP3564_08635 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AP3564_08640 PF02595 Glycerate kinase family AP3564_08650 PF02056 Family 4 glycosyl hydrolase AP3564_08650 PF11975 Family 4 glycosyl hydrolase C-terminal domain AP3564_08680 PF02899 Phage integrase, N-terminal SAM-like domain AP3564_08680 PF00589 Phage integrase family AP3564_08710 PF00701 Dihydrodipicolinate synthetase family AP3564_08715 PF00356 Bacterial regulatory proteins, lacI family AP3564_08720 PF07690 Major Facilitator Superfamily AP3564_08730 PF01979 Amidohydrolase family AP3564_08735 PF00005 ABC transporter AP3564_08740 PF00528 Binding-protein-dependent transport system inner membrane component AP3564_08750 PF09628 YvfG protein AP3564_08755 PF04552 Sigma-54, DNA binding domain AP3564_08755 PF04963 Sigma-54 factor, core binding domain AP3564_08755 PF00309 Sigma-54 factor, Activator interacting domain (AID) AP3564_08765 PF04198 Putative sugar-binding domain AP3564_08770 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AP3564_08770 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AP3564_08775 PF00162 Phosphoglycerate kinase AP3564_08780 PF00121 Triosephosphate isomerase AP3564_08785 PF01676 Metalloenzyme superfamily AP3564_08785 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AP3564_08790 PF00113 Enolase, C-terminal TIM barrel domain AP3564_08790 PF03952 Enolase, N-terminal domain AP3564_08800 PF03840 Preprotein translocase SecG subunit AP3564_08805 PF12146 Serine aminopeptidase, S33 AP3564_08810 PF00575 S1 RNA binding domain AP3564_08810 PF08206 Ribonuclease B OB domain AP3564_08810 PF17876 Cold shock domain AP3564_08810 PF00773 RNB domain AP3564_08815 PF01668 SmpB protein AP3564_08830 PF00551 Formyl transferase AP3564_08830 PF01842 ACT domain AP3564_08835 PF13411 MerR HTH family regulatory protein AP3564_08840 PF00206 Lyase AP3564_08840 PF10415 Fumarase C C-terminus AP3564_08845 PF13115 YtkA-like AP3564_08850 PF02386 Cation transport protein AP3564_08855 PF01497 Periplasmic binding protein AP3564_08860 PF01032 FecCD transport family AP3564_08865 PF01032 FecCD transport family AP3564_08870 PF00005 ABC transporter AP3564_08880 PF10835 Protein of unknown function (DUF2573) AP3564_08885 PF07875 Coat F domain AP3564_08895 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AP3564_08895 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AP3564_08895 PF00378 Enoyl-CoA hydratase/isomerase AP3564_08900 PF00108 Thiolase, N-terminal domain AP3564_08900 PF02803 Thiolase, C-terminal domain AP3564_08905 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AP3564_08905 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AP3564_08905 PF02770 Acyl-CoA dehydrogenase, middle domain AP3564_08910 PF03960 ArsC family AP3564_08915 PF01597 Glycine cleavage H-protein AP3564_08920 PF01751 Toprim domain AP3564_08925 PF00085 Thioredoxin AP3564_08935 PF00005 ABC transporter AP3564_08935 PF09383 NIL domain AP3564_08940 PF00528 Binding-protein-dependent transport system inner membrane component AP3564_08945 PF03180 NLPA lipoprotein AP3564_08955 PF00005 ABC transporter AP3564_08960 PF01458 Uncharacterized protein family (UPF0051) AP3564_08965 PF00266 Aminotransferase class-V AP3564_08970 PF01592 NifU-like N terminal domain AP3564_08975 PF01458 Uncharacterized protein family (UPF0051) AP3564_08990 PF01904 Protein of unknown function DUF72 AP3564_08995 PF02872 5'-nucleotidase, C-terminal domain AP3564_09000 PF08827 Domain of unknown function (DUF1805) AP3564_09005 PF01551 Peptidase family M23 AP3564_09010 PF04055 Radical SAM superfamily AP3564_09010 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AP3564_09015 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) AP3564_09020 PF06265 Protein of unknown function (DUF1027) AP3564_09035 PF01934 Protein of unknown function DUF86 AP3564_09040 PF13344 Haloacid dehalogenase-like hydrolase AP3564_09045 PF04608 Phosphatidylglycerophosphatase A AP3564_09055 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AP3564_09055 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AP3564_09060 PF01842 ACT domain AP3564_09060 PF03447 Homoserine dehydrogenase, NAD binding domain AP3564_09060 PF00742 Homoserine dehydrogenase AP3564_09065 PF00291 Pyridoxal-phosphate dependent enzyme AP3564_09070 PF00288 GHMP kinases N terminal domain AP3564_09070 PF08544 GHMP kinases C terminal AP3564_09075 PF01106 NifU-like domain AP3564_09080 PF07315 Protein of unknown function (DUF1462) AP3564_09085 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP3564_09090 PF07293 Protein of unknown function (DUF1450) AP3564_09095 PF01678 Diaminopimelate epimerase AP3564_09100 PF01521 Iron-sulphur cluster biosynthesis AP3564_09105 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP3564_09110 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP3564_09115 PF14068 Putative membrane protein AP3564_09120 PF06725 3D domain AP3564_09125 PF02789 Cytosol aminopeptidase family, N-terminal domain AP3564_09125 PF00883 Cytosol aminopeptidase family, catalytic domain AP3564_09135 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AP3564_09135 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AP3564_09140 PF01966 HD domain AP3564_09150 PF14166 YueH-like protein AP3564_09165 PF00171 Aldehyde dehydrogenase family AP3564_09175 PF00465 Iron-containing alcohol dehydrogenase AP3564_09180 PF02954 Bacterial regulatory protein, Fis family AP3564_09180 PF13426 PAS domain AP3564_09180 PF00158 Sigma-54 interaction domain AP3564_09200 PF00348 Polyprenyl synthetase AP3564_09205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP3564_09205 PF07730 Histidine kinase AP3564_09210 PF00196 Bacterial regulatory proteins, luxR family AP3564_09210 PF00072 Response regulator receiver domain AP3564_09215 PF03334 Na+/H+ antiporter subunit AP3564_09220 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AP3564_09225 PF01899 Na+/H+ ion antiporter subunit AP3564_09230 PF00361 Proton-conducting membrane transporter AP3564_09235 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AP3564_09240 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AP3564_09245 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AP3564_09245 PF00361 Proton-conducting membrane transporter AP3564_09245 PF13244 Domain of unknown function (DUF4040) AP3564_09255 PF04134 Protein of unknown function, DUF393 AP3564_09260 PF00929 Exonuclease AP3564_09265 PF08810 Kinase associated protein B AP3564_09275 PF00155 Aminotransferase class I and II AP3564_09280 PF08958 Domain of unknown function (DUF1871) AP3564_09285 PF00561 alpha/beta hydrolase fold AP3564_09285 PF08386 TAP-like protein AP3564_09290 PF01037 Lrp/AsnC ligand binding domain AP3564_09295 PF00155 Aminotransferase class I and II AP3564_09300 PF00575 S1 RNA binding domain AP3564_09305 PF04070 Domain of unknown function (DUF378) AP3564_09310 PF00342 Phosphoglucose isomerase AP3564_09315 PF08868 YugN-like family AP3564_09320 PF07885 Ion channel AP3564_09320 PF02254 TrkA-N domain AP3564_09325 PF11458 Membrane-integrating protein Mistic AP3564_09330 PF04298 Putative neutral zinc metallopeptidase AP3564_09335 PF01894 Uncharacterised protein family UPF0047 AP3564_09460 PF01258 Prokaryotic dksA/traR C4-type zinc finger AP3564_09465 PF01040 UbiA prenyltransferase family AP3564_09470 PF00425 chorismate binding enzyme AP3564_09475 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AP3564_09475 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AP3564_09475 PF16582 Middle domain of thiamine pyrophosphate AP3564_09480 PF00561 alpha/beta hydrolase fold AP3564_09485 PF00378 Enoyl-CoA hydratase/isomerase AP3564_09490 PF00501 AMP-binding enzyme AP3564_09490 PF13193 AMP-binding enzyme C-terminal domain AP3564_09500 PF01809 Putative membrane protein insertion efficiency factor AP3564_09505 PF02664 S-Ribosylhomocysteinase (LuxS) AP3564_09510 PF00210 Ferritin-like domain AP3564_09520 PF00293 NUDIX domain AP3564_09525 PF00528 Binding-protein-dependent transport system inner membrane component AP3564_09530 PF00005 ABC transporter AP3564_09540 PF00326 Prolyl oligopeptidase family AP3564_09545 PF10763 Protein of unknown function (DUF2584) AP3564_09560 PF01293 Phosphoenolpyruvate carboxykinase AP3564_09565 PF00438 S-adenosylmethionine synthetase, N-terminal domain AP3564_09565 PF02772 S-adenosylmethionine synthetase, central domain AP3564_09565 PF02773 S-adenosylmethionine synthetase, C-terminal domain AP3564_09570 PF01569 PAP2 superfamily AP3564_09575 PF00132 Bacterial transferase hexapeptide (six repeats) AP3564_09590 PF12146 Serine aminopeptidase, S33 AP3564_09595 PF10776 Protein of unknown function (DUF2600) AP3564_09600 PF06962 Putative rRNA methylase AP3564_09605 PF04055 Radical SAM superfamily AP3564_09605 PF16199 Radical_SAM C-terminal domain AP3564_09610 PF10732 Protein of unknown function (DUF2524) AP3564_09615 PF00392 Bacterial regulatory proteins, gntR family AP3564_09620 PF00534 Glycosyl transferases group 1 AP3564_09620 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase AP3564_09625 PF13603 Leucyl-tRNA synthetase, Domain 2 AP3564_09625 PF00133 tRNA synthetases class I (I, L, M and V) AP3564_09625 PF08264 Anticodon-binding domain of tRNA AP3564_09625 PF09334 tRNA synthetases class I (M) AP3564_09630 PF00581 Rhodanese-like domain AP3564_09635 PF10957 Sporulation protein Cse60 AP3564_09640 PF10414 Sirohaem synthase dimerisation region AP3564_09640 PF14824 Sirohaem biosynthesis protein central AP3564_09640 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AP3564_09660 PF14667 Polysaccharide biosynthesis C-terminal domain AP3564_09660 PF01943 Polysaccharide biosynthesis protein AP3564_09665 PF00849 RNA pseudouridylate synthase AP3564_09665 PF01479 S4 domain AP3564_09670 PF08220 DeoR-like helix-turn-helix domain AP3564_09680 PF00860 Permease family AP3564_09685 PF01546 Peptidase family M20/M25/M40 AP3564_09690 PF00893 Small Multidrug Resistance protein AP3564_09695 PF00893 Small Multidrug Resistance protein AP3564_09700 PF00291 Pyridoxal-phosphate dependent enzyme AP3564_09705 PF02834 LigT like Phosphoesterase AP3564_09710 PF03788 LrgA family AP3564_09715 PF04172 LrgB-like family AP3564_09725 PF01636 Phosphotransferase enzyme family AP3564_09730 PF14165 YtzH-like protein AP3564_09735 PF02390 Putative methyltransferase AP3564_09745 PF03413 Peptidase propeptide and YPEB domain AP3564_09750 PF05343 M42 glutamyl aminopeptidase AP3564_09755 PF01931 Protein of unknown function DUF84 AP3564_09760 PF00085 Thioredoxin AP3564_09765 PF07285 Protein of unknown function (DUF1444) AP3564_09770 PF14794 Domain of unknown function (DUF4479) AP3564_09770 PF01588 Putative tRNA binding domain AP3564_09775 PF03606 C4-dicarboxylate anaerobic carrier AP3564_09780 PF01274 Malate synthase AP3564_09785 PF00463 Isocitrate lyase family AP3564_09790 PF08858 IDEAL domain AP3564_09795 PF06338 ComK protein AP3564_09805 PF09335 SNARE associated Golgi protein AP3564_09810 PF10502 Signal peptidase, peptidase S26 AP3564_09815 PF12705 PD-(D/E)XK nuclease superfamily AP3564_09820 PF00580 UvrD/REP helicase N-terminal domain AP3564_09820 PF12705 PD-(D/E)XK nuclease superfamily AP3564_09820 PF13361 UvrD-like helicase C-terminal domain AP3564_09825 PF13361 UvrD-like helicase C-terminal domain AP3564_09825 PF12705 PD-(D/E)XK nuclease superfamily AP3564_09825 PF00580 UvrD/REP helicase N-terminal domain AP3564_09830 PF00149 Calcineurin-like phosphoesterase AP3564_09830 PF12320 Type 5 capsule protein repressor C-terminal domain AP3564_09835 PF13476 AAA domain AP3564_09840 PF10676 Spore germination protein gerPA/gerPF AP3564_09855 PF10737 Spore germination protein GerPC AP3564_09860 PF10803 Spore germination GerPB AP3564_09865 PF10676 Spore germination protein gerPA/gerPF AP3564_09870 PF02082 Transcriptional regulator AP3564_09875 PF10055 Uncharacterized small protein (DUF2292) AP3564_09885 PF00528 Binding-protein-dependent transport system inner membrane component AP3564_09890 PF00528 Binding-protein-dependent transport system inner membrane component AP3564_09895 PF12857 TOBE-like domain AP3564_09895 PF17850 CysA C-terminal regulatory domain AP3564_09895 PF00005 ABC transporter AP3564_09900 PF09084 NMT1/THI5 like AP3564_09915 PF01026 TatD related DNase AP3564_09920 PF01557 Fumarylacetoacetate (FAA) hydrolase family AP3564_09925 PF07457 Protein of unknown function (DUF1516) AP3564_09935 PF13537 Glutamine amidotransferase domain AP3564_09935 PF00733 Asparagine synthase AP3564_09945 PF16657 Maltogenic Amylase, C-terminal domain AP3564_09945 PF00128 Alpha amylase, catalytic domain AP3564_09945 PF02903 Alpha amylase, N-terminal ig-like domain AP3564_09955 PF10282 Lactonase, 7-bladed beta-propeller AP3564_09960 PF00149 Calcineurin-like phosphoesterase AP3564_09975 PF02574 Homocysteine S-methyltransferase AP3564_09975 PF00809 Pterin binding enzyme AP3564_09975 PF02965 Vitamin B12 dependent methionine synthase, activation domain AP3564_09975 PF02607 B12 binding domain AP3564_09975 PF02310 B12 binding domain AP3564_09980 PF02574 Homocysteine S-methyltransferase AP3564_09980 PF02219 Methylenetetrahydrofolate reductase AP3564_09985 PF04461 Protein of unknown function (DUF520) AP3564_09990 PF12323 Helix-turn-helix domain AP3564_09990 PF01385 Probable transposase AP3564_09990 PF07282 Putative transposase DNA-binding domain AP3564_10005 PF02645 Uncharacterised protein, DegV family COG1307 AP3564_10020 PF00326 Prolyl oligopeptidase family AP3564_10025 PF01883 Iron-sulfur cluster assembly protein AP3564_10030 PF01118 Semialdehyde dehydrogenase, NAD binding domain AP3564_10030 PF02774 Semialdehyde dehydrogenase, dimerisation domain AP3564_10035 PF01960 ArgJ family AP3564_10040 PF00696 Amino acid kinase family AP3564_10045 PF00202 Aminotransferase class-III AP3564_10050 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AP3564_10050 PF00117 Glutamine amidotransferase class-I AP3564_10055 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AP3564_10055 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AP3564_10060 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AP3564_10060 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AP3564_10065 PF14168 YjzC-like protein AP3564_10070 PF17871 AAA lid domain AP3564_10070 PF00004 ATPase family associated with various cellular activities (AAA) AP3564_10070 PF07724 AAA domain (Cdc48 subfamily) AP3564_10070 PF10431 C-terminal, D2-small domain, of ClpB protein AP3564_10070 PF02861 Clp amino terminal domain, pathogenicity island component AP3564_10090 PF02608 ABC transporter substrate-binding protein PnrA-like AP3564_10100 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AP3564_10100 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AP3564_10105 PF02801 Beta-ketoacyl synthase, C-terminal domain AP3564_10105 PF00109 Beta-ketoacyl synthase, N-terminal domain AP3564_10110 PF10026 Predicted Zn-dependent protease (DUF2268) AP3564_10115 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AP3564_10120 PF12227 Protein of unknown function (DUF3603) AP3564_10125 PF00579 tRNA synthetases class I (W and Y) AP3564_10130 PF03960 ArsC family AP3564_10135 PF03741 Integral membrane protein TerC family AP3564_10140 PF05389 Negative regulator of genetic competence (MecA) AP3564_10145 PF13396 Phospholipase_D-nuclease N-terminal AP3564_10145 PF13091 PLD-like domain AP3564_10150 PF06054 Competence protein CoiA-like family AP3564_10155 PF01432 Peptidase family M3 AP3564_10155 PF08439 Oligopeptidase F AP3564_10165 PF01152 Bacterial-like globin AP3564_10170 PF01464 Transglycosylase SLT domain AP3564_10175 PF01928 CYTH domain AP3564_10185 PF04607 Region found in RelA / SpoT proteins AP3564_10190 PF01513 ATP-NAD kinase AP3564_10195 PF00849 RNA pseudouridylate synthase AP3564_10200 PF03448 MgtE intracellular N domain AP3564_10200 PF01769 Divalent cation transporter AP3564_10200 PF00571 CBS domain AP3564_10205 PF00999 Sodium/hydrogen exchanger family AP3564_10205 PF02080 TrkA-C domain AP3564_10205 PF02254 TrkA-N domain AP3564_10210 PF02581 Thiamine monophosphate synthase AP3564_10215 PF01266 FAD dependent oxidoreductase AP3564_10220 PF02597 ThiS family AP3564_10225 PF05690 Thiazole biosynthesis protein ThiG AP3564_10230 PF00899 ThiF family AP3564_10235 PF08543 Phosphomethylpyrimidine kinase AP3564_10250 PF07098 Protein of unknown function (DUF1360) AP3564_10290 PF14069 Stage VI sporulation protein F AP3564_10300 PF04239 Protein of unknown function (DUF421) AP3564_10305 PF13673 Acetyltransferase (GNAT) domain AP3564_10315 PF00756 Putative esterase AP3564_10320 PF00005 ABC transporter AP3564_10330 PF09084 NMT1/THI5 like AP3564_10340 PF01053 Cys/Met metabolism PLP-dependent enzyme AP3564_10345 PF01053 Cys/Met metabolism PLP-dependent enzyme AP3564_10350 PF16868 NMT1-like family AP3564_10370 PF00753 Metallo-beta-lactamase superfamily AP3564_10370 PF13567 Domain of unknown function (DUF4131) AP3564_10370 PF03772 Competence protein AP3564_10380 PF06463 Molybdenum Cofactor Synthesis C AP3564_10380 PF04055 Radical SAM superfamily AP3564_10385 PF12833 Helix-turn-helix domain AP3564_10385 PF10114 Sensory domain found in PocR AP3564_10390 PF02625 XdhC and CoxI family AP3564_10390 PF13478 XdhC Rossmann domain AP3564_10395 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AP3564_10395 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AP3564_10405 PF00941 FAD binding domain in molybdopterin dehydrogenase AP3564_10405 PF03450 CO dehydrogenase flavoprotein C-terminal domain AP3564_10410 PF00111 2Fe-2S iron-sulfur cluster binding domain AP3564_10410 PF01799 [2Fe-2S] binding domain AP3564_10415 PF13193 AMP-binding enzyme C-terminal domain AP3564_10415 PF00501 AMP-binding enzyme AP3564_10420 PF00378 Enoyl-CoA hydratase/isomerase AP3564_10425 PF07690 Major Facilitator Superfamily AP3564_10425 PF00083 Sugar (and other) transporter AP3564_10460 PF13529 Peptidase_C39 like family AP3564_10465 PF00733 Asparagine synthase AP3564_10465 PF13537 Glutamine amidotransferase domain AP3564_10520 PF18593 CdiI immunity protein AP3564_10525 PF13333 Integrase core domain AP3564_10525 PF00665 Integrase core domain AP3564_10525 PF13276 HTH-like domain AP3564_10565 PF13333 Integrase core domain AP3564_10565 PF00665 Integrase core domain AP3564_10565 PF13276 HTH-like domain AP3564_10580 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AP3564_10585 PF00367 phosphotransferase system, EIIB AP3564_10585 PF02378 Phosphotransferase system, EIIC AP3564_10590 PF16657 Maltogenic Amylase, C-terminal domain AP3564_10590 PF00128 Alpha amylase, catalytic domain AP3564_10595 PF00392 Bacterial regulatory proteins, gntR family AP3564_10595 PF07702 UTRA domain AP3564_10600 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP3564_10620 PF07732 Multicopper oxidase AP3564_10620 PF07731 Multicopper oxidase AP3564_10620 PF00394 Multicopper oxidase AP3564_10620 PF07732 Multicopper oxidase AP3564_10620 PF07731 Multicopper oxidase AP3564_10620 PF00394 Multicopper oxidase AP3564_10645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP3564_10645 PF00512 His Kinase A (phospho-acceptor) domain AP3564_10645 PF00672 HAMP domain AP3564_10650 PF00486 Transcriptional regulatory protein, C terminal AP3564_10650 PF00072 Response regulator receiver domain AP3564_10660 PF01609 Transposase DDE domain AP3564_10680 PF00578 AhpC/TSA family AP3564_10685 PF02683 Cytochrome C biogenesis protein transmembrane region AP3564_10690 PF02583 Metal-sensitive transcriptional repressor AP3564_10695 PF00403 Heavy-metal-associated domain AP3564_10700 PF00403 Heavy-metal-associated domain AP3564_10710 PF07732 Multicopper oxidase AP3564_10710 PF00394 Multicopper oxidase AP3564_10710 PF07731 Multicopper oxidase AP3564_10725 PF13005 zinc-finger binding domain of transposase IS66 AP3564_10725 PF13817 IS66 C-terminal element AP3564_10725 PF13007 Transposase C of IS166 homeodomain AP3564_10725 PF03050 Transposase IS66 family AP3564_10730 PF00356 Bacterial regulatory proteins, lacI family AP3564_10730 PF13407 Periplasmic binding protein domain AP3564_10735 PF02378 Phosphotransferase system, EIIC AP3564_10735 PF00367 phosphotransferase system, EIIB AP3564_10740 PF00251 Glycosyl hydrolases family 32 N-terminal domain AP3564_10740 PF08244 Glycosyl hydrolases family 32 C terminal AP3564_10745 PF00294 pfkB family carbohydrate kinase AP3564_10750 PF00202 Aminotransferase class-III AP3564_10760 PF02632 BioY family AP3564_10770 PF00692 dUTPase AP3564_10775 PF02492 CobW/HypB/UreG, nucleotide-binding domain AP3564_10775 PF07683 Cobalamin synthesis protein cobW C-terminal domain AP3564_10790 PF01965 DJ-1/PfpI family AP3564_10795 PF05651 Putative sugar diacid recognition AP3564_10795 PF13556 PucR C-terminal helix-turn-helix domain AP3564_10795 PF17853 GGDEF-like domain AP3564_10800 PF02913 FAD linked oxidases, C-terminal domain AP3564_10800 PF01565 FAD binding domain AP3564_10805 PF02754 Cysteine-rich domain AP3564_10805 PF13183 4Fe-4S dicluster domain AP3564_10810 PF00085 Thioredoxin AP3564_10850 PF08463 EcoEI R protein C-terminal AP3564_10850 PF04851 Type III restriction enzyme, res subunit AP3564_10850 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AP3564_10850 PF00271 Helicase conserved C-terminal domain AP3564_10855 PF02384 N-6 DNA Methylase AP3564_10860 PF01420 Type I restriction modification DNA specificity domain AP3564_10865 PF13005 zinc-finger binding domain of transposase IS66 AP3564_10865 PF13007 Transposase C of IS166 homeodomain AP3564_10865 PF13817 IS66 C-terminal element AP3564_10865 PF03050 Transposase IS66 family AP3564_10900 PF13333 Integrase core domain AP3564_10900 PF00665 Integrase core domain AP3564_10900 PF13276 HTH-like domain AP3564_10915 PF16868 NMT1-like family AP3564_10930 PF02913 FAD linked oxidases, C-terminal domain AP3564_10930 PF01565 FAD binding domain AP3564_10935 PF13183 4Fe-4S dicluster domain AP3564_10935 PF02754 Cysteine-rich domain AP3564_10940 PF01266 FAD dependent oxidoreductase AP3564_10980 PF02384 N-6 DNA Methylase AP3564_11000 PF00664 ABC transporter transmembrane region AP3564_11000 PF00005 ABC transporter AP3564_11005 PF00664 ABC transporter transmembrane region AP3564_11005 PF00005 ABC transporter AP3564_11010 PF02322 Cytochrome bd terminal oxidase subunit II AP3564_11015 PF01654 Cytochrome bd terminal oxidase subunit I AP3564_11020 PF11514 Protein of unknown function (DUF3219) AP3564_11025 PF00005 ABC transporter AP3564_11040 PF02634 FdhD/NarQ family AP3564_11045 PF12838 4Fe-4S dicluster domain AP3564_11045 PF00384 Molybdopterin oxidoreductase AP3564_11045 PF01568 Molydopterin dinucleotide binding domain AP3564_11045 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AP3564_11045 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AP3564_11050 PF07849 Protein of unknown function (DUF1641) AP3564_11055 PF00183 Hsp90 protein AP3564_11065 PF00149 Calcineurin-like phosphoesterase AP3564_11075 PF07690 Major Facilitator Superfamily AP3564_11080 PF07883 Cupin domain AP3564_11100 PF03061 Thioesterase superfamily AP3564_11105 PF00501 AMP-binding enzyme AP3564_11105 PF13193 AMP-binding enzyme C-terminal domain AP3564_11115 PF00005 ABC transporter AP3564_11125 PF12704 MacB-like periplasmic core domain AP3564_11125 PF02687 FtsX-like permease family AP3564_11125 PF00005 ABC transporter AP3564_11135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP3564_11160 PF01381 Helix-turn-helix AP3564_11165 PF01614 Bacterial transcriptional regulator AP3564_11165 PF09339 IclR helix-turn-helix domain AP3564_11170 PF01380 SIS domain AP3564_11200 PF01053 Cys/Met metabolism PLP-dependent enzyme AP3564_11210 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AP3564_11210 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AP3564_11210 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain AP3564_11215 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AP3564_11215 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AP3564_11220 PF02803 Thiolase, C-terminal domain AP3564_11220 PF00108 Thiolase, N-terminal domain AP3564_11225 PF00171 Aldehyde dehydrogenase family AP3564_11230 PF00378 Enoyl-CoA hydratase/isomerase AP3564_11245 PF16123 Hydroxyacylglutathione hydrolase C-terminus AP3564_11245 PF00753 Metallo-beta-lactamase superfamily AP3564_11255 PF01883 Iron-sulfur cluster assembly protein AP3564_11270 PF00378 Enoyl-CoA hydratase/isomerase AP3564_11275 PF00378 Enoyl-CoA hydratase/isomerase AP3564_11280 PF13193 AMP-binding enzyme C-terminal domain AP3564_11280 PF00501 AMP-binding enzyme AP3564_11290 PF13193 AMP-binding enzyme C-terminal domain AP3564_11290 PF00501 AMP-binding enzyme AP3564_11295 PF13382 Adenine deaminase C-terminal domain AP3564_11295 PF01979 Amidohydrolase family AP3564_11310 PF00392 Bacterial regulatory proteins, gntR family AP3564_11315 PF00005 ABC transporter AP3564_11325 PF08281 Sigma-70, region 4 AP3564_11325 PF04542 Sigma-70 region 2 AP3564_11335 PF01063 Amino-transferase class IV AP3564_11350 PF04238 Protein of unknown function (DUF420) AP3564_11355 PF00582 Universal stress protein family AP3564_11395 PF01522 Polysaccharide deacetylase AP3564_11395 PF11738 Protein of unknown function (DUF3298) AP3564_11395 PF13739 Deacetylase PdaC AP3564_11405 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP3564_11410 PF07486 Cell Wall Hydrolase AP3564_11415 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP3564_11420 PF01609 Transposase DDE domain AP3564_11425 PF07561 Domain of Unknown Function (DUF1540) AP3564_11430 PF05036 Sporulation related domain AP3564_11430 PF01520 N-acetylmuramoyl-L-alanine amidase AP3564_11435 PF01497 Periplasmic binding protein AP3564_11440 PF01032 FecCD transport family AP3564_11445 PF00005 ABC transporter AP3564_11450 PF03186 CobD/Cbib protein AP3564_11455 PF00155 Aminotransferase class I and II AP3564_11460 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AP3564_11470 PF02654 Cobalamin-5-phosphate synthase AP3564_11495 PF13411 MerR HTH family regulatory protein AP3564_11500 PF00571 CBS domain AP3564_11500 PF03471 Transporter associated domain AP3564_11500 PF01595 Cyclin M transmembrane N-terminal domain AP3564_11505 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) AP3564_11510 PF00361 Proton-conducting membrane transporter AP3564_11510 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AP3564_11515 PF10057 Uncharacterized conserved protein (DUF2294) AP3564_11520 PF13840 ACT domain AP3564_11520 PF00696 Amino acid kinase family AP3564_11525 PF12729 Four helix bundle sensory module for signal transduction AP3564_11525 PF00672 HAMP domain AP3564_11525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP3564_11530 PF01047 MarR family AP3564_11535 PF00990 Diguanylate cyclase, GGDEF domain AP3564_11535 PF00563 EAL domain AP3564_11535 PF03707 Bacterial signalling protein N terminal repeat AP3564_11545 PF01068 ATP dependent DNA ligase domain AP3564_11550 PF00475 Imidazoleglycerol-phosphate dehydratase AP3564_11555 PF02735 Ku70/Ku80 beta-barrel domain AP3564_11560 PF02416 mttA/Hcf106 family AP3564_11565 PF00269 Small, acid-soluble spore proteins, alpha/beta type AP3564_11570 PF00571 CBS domain AP3564_11570 PF00005 ABC transporter AP3564_11575 PF00528 Binding-protein-dependent transport system inner membrane component AP3564_11580 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AP3564_11595 PF08876 Domain of unknown function (DUF1836) AP3564_11600 PF02386 Cation transport protein AP3564_11605 PF00905 Penicillin binding protein transpeptidase domain AP3564_11605 PF05223 NTF2-like N-terminal transpeptidase domain AP3564_11605 PF03717 Penicillin-binding Protein dimerisation domain AP3564_11610 PF02310 B12 binding domain AP3564_11610 PF04055 Radical SAM superfamily AP3564_11615 PF00392 Bacterial regulatory proteins, gntR family AP3564_11615 PF07729 FCD domain AP3564_11620 PF02754 Cysteine-rich domain AP3564_11625 PF11870 Domain of unknown function (DUF3390) AP3564_11625 PF13183 4Fe-4S dicluster domain AP3564_11625 PF02589 LUD domain AP3564_11630 PF02589 LUD domain AP3564_11635 PF01757 Acyltransferase family AP3564_11640 PF00512 His Kinase A (phospho-acceptor) domain AP3564_11640 PF00989 PAS fold AP3564_11640 PF13188 PAS domain AP3564_11640 PF13426 PAS domain AP3564_11640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP3564_11645 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AP3564_11645 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AP3564_11650 PF05816 Toxic anion resistance protein (TelA) AP3564_11655 PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein AP3564_11660 PF01906 Putative heavy-metal-binding AP3564_11665 PF09388 Spo0E like sporulation regulatory protein AP3564_11670 PF02535 ZIP Zinc transporter AP3564_11680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP3564_11680 PF02743 Cache domain AP3564_11680 PF00512 His Kinase A (phospho-acceptor) domain AP3564_11685 PF01047 MarR family AP3564_11695 PF13677 Membrane MotB of proton-channel complex MotA/MotB AP3564_11695 PF00691 OmpA family AP3564_11700 PF01618 MotA/TolQ/ExbB proton channel family AP3564_11705 PF00004 ATPase family associated with various cellular activities (AAA) AP3564_11705 PF07724 AAA domain (Cdc48 subfamily) AP3564_11705 PF17871 AAA lid domain AP3564_11705 PF10431 C-terminal, D2-small domain, of ClpB protein AP3564_11715 PF00149 Calcineurin-like phosphoesterase AP3564_11720 PF06508 Queuosine biosynthesis protein QueC AP3564_11725 PF01242 6-pyruvoyl tetrahydropterin synthase AP3564_11730 PF04055 Radical SAM superfamily AP3564_11745 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) AP3564_11760 PF03323 Bacillus/Clostridium GerA spore germination protein AP3564_11765 PF03845 Spore germination protein AP3564_11775 PF01943 Polysaccharide biosynthesis protein AP3564_11780 PF00578 AhpC/TSA family AP3564_11795 PF00565 Staphylococcal nuclease homologue AP3564_11800 PF00365 Phosphofructokinase AP3564_11820 PF01545 Cation efflux family AP3564_11820 PF16916 Dimerisation domain of Zinc Transporter AP3564_11825 PF03123 CAT RNA binding domain AP3564_11825 PF00874 PRD domain AP3564_11830 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AP3564_11830 PF00367 phosphotransferase system, EIIB AP3564_11830 PF02378 Phosphotransferase system, EIIC AP3564_11835 PF00381 PTS HPr component phosphorylation site AP3564_11840 PF05524 PEP-utilising enzyme, N-terminal AP3564_11840 PF00391 PEP-utilising enzyme, mobile domain AP3564_11840 PF02896 PEP-utilising enzyme, TIM barrel domain AP3564_11845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP3564_11845 PF02743 Cache domain AP3564_11845 PF00672 HAMP domain AP3564_11855 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AP3564_11855 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AP3564_11860 PF00188 Cysteine-rich secretory protein family AP3564_11865 PF00905 Penicillin binding protein transpeptidase domain AP3564_11865 PF03717 Penicillin-binding Protein dimerisation domain AP3564_11870 PF00989 PAS fold AP3564_11870 PF08447 PAS fold AP3564_11870 PF00512 His Kinase A (phospho-acceptor) domain AP3564_11870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP3564_11875 PF00155 Aminotransferase class I and II AP3564_11880 PF01544 CorA-like Mg2+ transporter protein AP3564_11895 PF01584 CheW-like domain AP3564_11895 PF00072 Response regulator receiver domain AP3564_11900 PF14177 YkyB-like protein AP3564_11905 PF01022 Bacterial regulatory protein, arsR family AP3564_11910 PF07690 Major Facilitator Superfamily AP3564_11915 PF10518 TAT (twin-arginine translocation) pathway signal sequence AP3564_11915 PF00149 Calcineurin-like phosphoesterase AP3564_11930 PF00563 EAL domain AP3564_11930 PF10388 EAL-domain associated signalling protein domain AP3564_11940 PF00005 ABC transporter AP3564_11950 PF01497 Periplasmic binding protein AP3564_11955 PF01032 FecCD transport family AP3564_11960 PF01032 FecCD transport family AP3564_11965 PF14156 Antirepressor AbbA AP3564_11975 PF07690 Major Facilitator Superfamily AP3564_11980 PF03466 LysR substrate binding domain AP3564_11980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP3564_11985 PF14602 Hexapeptide repeat of succinyl-transferase AP3564_11985 PF00132 Bacterial transferase hexapeptide (six repeats) AP3564_11985 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal AP3564_11990 PF01546 Peptidase family M20/M25/M40 AP3564_11990 PF07687 Peptidase dimerisation domain AP3564_11995 PF00924 Mechanosensitive ion channel AP3564_12000 PF00578 AhpC/TSA family AP3564_12000 PF10417 C-terminal domain of 1-Cys peroxiredoxin AP3564_12005 PF00578 AhpC/TSA family AP3564_12015 PF07687 Peptidase dimerisation domain AP3564_12015 PF01546 Peptidase family M20/M25/M40 AP3564_12020 PF03070 TENA/THI-4/PQQC family AP3564_12025 PF03070 TENA/THI-4/PQQC family AP3564_12035 PF00005 ABC transporter AP3564_12050 PF02653 Branched-chain amino acid transport system / permease component AP3564_12060 PF12399 Branched-chain amino acid ATP-binding cassette transporter AP3564_12060 PF00005 ABC transporter AP3564_12065 PF00005 ABC transporter AP3564_12070 PF00547 Urease, gamma subunit AP3564_12075 PF00699 Urease beta subunit AP3564_12080 PF00449 Urease alpha-subunit, N-terminal domain AP3564_12080 PF01979 Amidohydrolase family AP3564_12085 PF05194 UreE urease accessory protein, C-terminal domain AP3564_12085 PF02814 UreE urease accessory protein, N-terminal domain AP3564_12090 PF01730 UreF AP3564_12095 PF02492 CobW/HypB/UreG, nucleotide-binding domain AP3564_12100 PF01774 UreD urease accessory protein AP3564_12105 PF13386 Cytochrome C biogenesis protein transmembrane region AP3564_12110 PF01609 Transposase DDE domain AP3564_12125 PF00005 ABC transporter AP3564_12130 PF01979 Amidohydrolase family AP3564_12140 PF02633 Creatinine amidohydrolase AP3564_12160 PF01979 Amidohydrolase family AP3564_12165 PF07969 Amidohydrolase family AP3564_12170 PF03358 NADPH-dependent FMN reductase AP3564_12175 PF02625 XdhC and CoxI family AP3564_12175 PF13478 XdhC Rossmann domain AP3564_12185 PF00941 FAD binding domain in molybdopterin dehydrogenase AP3564_12190 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AP3564_12190 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AP3564_12195 PF00111 2Fe-2S iron-sulfur cluster binding domain AP3564_12195 PF01799 [2Fe-2S] binding domain AP3564_12205 PF00576 HIUase/Transthyretin family AP3564_12210 PF09349 OHCU decarboxylase AP3564_12210 PF01014 Uricase AP3564_12215 PF00860 Permease family AP3564_12220 PF13556 PucR C-terminal helix-turn-helix domain AP3564_12220 PF07905 Purine catabolism regulatory protein-like family AP3564_12220 PF17853 GGDEF-like domain AP3564_12225 PF01546 Peptidase family M20/M25/M40 AP3564_12230 PF00266 Aminotransferase class-V AP3564_12235 PF01979 Amidohydrolase family AP3564_12250 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AP3564_12250 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AP3564_12260 PF00271 Helicase conserved C-terminal domain AP3564_12260 PF04851 Type III restriction enzyme, res subunit AP3564_12295 PF00145 C-5 cytosine-specific DNA methylase AP3564_12305 PF07687 Peptidase dimerisation domain AP3564_12305 PF01546 Peptidase family M20/M25/M40 AP3564_12335 PF08220 DeoR-like helix-turn-helix domain AP3564_12335 PF00455 DeoR C terminal sensor domain AP3564_12340 PF00294 pfkB family carbohydrate kinase AP3564_12345 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AP3564_12345 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AP3564_12355 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AP3564_12355 PF07685 CobB/CobQ-like glutamine amidotransferase domain AP3564_12365 PF13556 PucR C-terminal helix-turn-helix domain AP3564_12365 PF17853 GGDEF-like domain AP3564_12365 PF05651 Putative sugar diacid recognition AP3564_12370 PF13382 Adenine deaminase C-terminal domain AP3564_12370 PF01979 Amidohydrolase family AP3564_12375 PF02417 Chromate transporter AP3564_12380 PF02417 Chromate transporter AP3564_12385 PF13404 AsnC-type helix-turn-helix domain AP3564_12385 PF01037 Lrp/AsnC ligand binding domain AP3564_12410 PF01555 DNA methylase AP3564_12420 PF13732 Domain of unknown function (DUF4162) AP3564_12420 PF00005 ABC transporter AP3564_12425 PF00005 ABC transporter AP3564_12445 PF03190 Protein of unknown function, DUF255 AP3564_12450 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal AP3564_12450 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal AP3564_12460 PF00325 Bacterial regulatory proteins, crp family AP3564_12460 PF00027 Cyclic nucleotide-binding domain AP3564_12470 PF04893 Yip1 domain AP3564_12475 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AP3564_12480 PF00005 ABC transporter AP3564_12485 PF02687 FtsX-like permease family AP3564_12485 PF12704 MacB-like periplasmic core domain AP3564_12490 PF01098 Cell cycle protein AP3564_12515 PF02073 Thermophilic metalloprotease (M29) AP3564_12520 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AP3564_12520 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AP3564_12520 PF02770 Acyl-CoA dehydrogenase, middle domain AP3564_12525 PF07690 Major Facilitator Superfamily AP3564_12530 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment AP3564_12530 PF01297 Zinc-uptake complex component A periplasmic AP3564_12535 PF01925 Sulfite exporter TauE/SafE AP3564_12540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP3564_12540 PF03466 LysR substrate binding domain AP3564_12545 PF02146 Sir2 family AP3564_12555 PF02254 TrkA-N domain AP3564_12555 PF02080 TrkA-C domain AP3564_12560 PF00753 Metallo-beta-lactamase superfamily AP3564_12560 PF17770 Ribonuclease J C-terminal domain AP3564_12560 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AP3564_12575 PF01327 Polypeptide deformylase AP3564_12580 PF00676 Dehydrogenase E1 component AP3564_12585 PF02779 Transketolase, pyrimidine binding domain AP3564_12585 PF02780 Transketolase, C-terminal domain AP3564_12590 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AP3564_12590 PF00364 Biotin-requiring enzyme AP3564_12590 PF02817 e3 binding domain AP3564_12595 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AP3564_12595 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP3564_12610 PF01381 Helix-turn-helix AP3564_12635 PF00005 ABC transporter AP3564_12655 PF13333 Integrase core domain AP3564_12655 PF13276 HTH-like domain AP3564_12655 PF00665 Integrase core domain AP3564_12665 PF00892 EamA-like transporter family AP3564_12670 PF01276 Orn/Lys/Arg decarboxylase, major domain AP3564_12670 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AP3564_12695 PF06335 Protein of unknown function (DUF1054) AP3564_12700 PF00459 Inositol monophosphatase family AP3564_12715 PF14036 YlaH-like protein AP3564_12720 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) AP3564_12725 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) AP3564_12730 PF02562 PhoH-like protein AP3564_12730 PF13638 PIN domain AP3564_12740 PF07408 Protein of unknown function (DUF1507) AP3564_12745 PF01098 Cell cycle protein AP3564_12750 PF00682 HMGL-like AP3564_12750 PF02785 Biotin carboxylase C-terminal domain AP3564_12750 PF00289 Biotin carboxylase, N-terminal domain AP3564_12750 PF02436 Conserved carboxylase domain AP3564_12750 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AP3564_12750 PF00364 Biotin-requiring enzyme AP3564_12765 PF00350 Dynamin family AP3564_12770 PF10752 Protein of unknown function (DUF2533) AP3564_12775 PF13456 Reverse transcriptase-like AP3564_12780 PF10782 Zinc-finger AP3564_12785 PF00313 'Cold-shock' DNA-binding domain AP3564_12790 PF00534 Glycosyl transferases group 1 AP3564_12790 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase AP3564_12795 PF04204 Homoserine O-succinyltransferase AP3564_12800 PF00255 Glutathione peroxidase AP3564_12805 PF13769 Virulence factor AP3564_12805 PF08712 Scaffold protein Nfu/NifU N terminal AP3564_12810 PF06491 Disulphide isomerase AP3564_12815 PF14005 YpjP-like protein AP3564_12820 PF04608 Phosphatidylglycerophosphatase A AP3564_12825 PF00303 Thymidylate synthase AP3564_12830 PF00186 Dihydrofolate reductase AP3564_12835 PF00291 Pyridoxal-phosphate dependent enzyme AP3564_12835 PF00585 C-terminal regulatory domain of Threonine dehydratase AP3564_12840 PF10751 Protein of unknown function (DUF2535) AP3564_12845 PF02645 Uncharacterised protein, DegV family COG1307 AP3564_12850 PF02630 SCO1/SenC AP3564_12870 PF09299 Mu transposase, C-terminal AP3564_12870 PF00665 Integrase core domain AP3564_12885 PF13472 GDSL-like Lipase/Acylhydrolase family AP3564_12890 PF09911 Uncharacterized protein conserved in bacteria (DUF2140) AP3564_12895 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF AP3564_12895 PF17126 RsmF rRNA methyltransferase first C-terminal domain AP3564_12895 PF01189 16S rRNA methyltransferase RsmB/F AP3564_12900 PF17431 Uncharacterized YmpT-like AP3564_12905 PF07690 Major Facilitator Superfamily AP3564_12910 PF01625 Peptide methionine sulfoxide reductase AP3564_12910 PF01641 SelR domain AP3564_12920 PF06968 Biotin and Thiamin Synthesis associated domain AP3564_12920 PF04055 Radical SAM superfamily AP3564_12925 PF06855 YozE SAM-like fold AP3564_12940 PF00069 Protein kinase domain AP3564_12945 PF07070 SpoOM protein AP3564_12955 PF01569 PAP2 superfamily AP3564_12960 PF14191 YodL-like AP3564_12965 PF01048 Phosphorylase superfamily AP3564_12970 PF02557 D-alanyl-D-alanine carboxypeptidase AP3564_12975 PF03572 Peptidase family S41 AP3564_12975 PF17820 PDZ domain AP3564_12975 PF01471 Putative peptidoglycan binding domain AP3564_12995 PF00892 EamA-like transporter family AP3564_13005 PF08830 Protein of unknown function (DUF1806) AP3564_13010 PF02585 GlcNAc-PI de-N-acetylase AP3564_13015 PF00877 NlpC/P60 family AP3564_13015 PF01476 LysM domain AP3564_13045 PF00324 Amino acid permease AP3564_13050 PF07728 AAA domain (dynein-related subfamily) AP3564_13055 PF00092 von Willebrand factor type A domain AP3564_13060 PF16078 2-oxoglutarate dehydrogenase N-terminus AP3564_13060 PF00676 Dehydrogenase E1 component AP3564_13060 PF02779 Transketolase, pyrimidine binding domain AP3564_13060 PF16870 2-oxoglutarate dehydrogenase C-terminal AP3564_13065 PF00364 Biotin-requiring enzyme AP3564_13065 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AP3564_13065 PF02817 e3 binding domain AP3564_13075 PF01256 Carbohydrate kinase AP3564_13080 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AP3564_13080 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AP3564_13090 PF00171 Aldehyde dehydrogenase family AP3564_13100 PF11007 Spore coat associated protein JA (CotJA) AP3564_13105 PF12652 CotJB protein AP3564_13110 PF05067 Manganese containing catalase AP3564_13120 PF03459 TOBE domain AP3564_13120 PF00005 ABC transporter AP3564_13135 PF02334 Replication terminator protein AP3564_13155 PF09560 Sporulation protein YunB (Spo_YunB) AP3564_13170 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AP3564_13175 PF07451 Stage V sporulation protein AD (SpoVAD) AP3564_13180 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AP3564_13190 PF04239 Protein of unknown function (DUF421) AP3564_13195 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP3564_13210 PF00920 Dehydratase family AP3564_13215 PF00474 Sodium:solute symporter family AP3564_13225 PF01625 Peptide methionine sulfoxide reductase AP3564_13250 PF01554 MatE AP3564_13260 PF07690 Major Facilitator Superfamily AP3564_13265 PF00440 Bacterial regulatory proteins, tetR family AP3564_13270 PF00873 AcrB/AcrD/AcrF family AP3564_13285 PF00753 Metallo-beta-lactamase superfamily AP3564_13315 PF00171 Aldehyde dehydrogenase family AP3564_13320 PF02583 Metal-sensitive transcriptional repressor AP3564_13325 PF00403 Heavy-metal-associated domain AP3564_13330 PF00403 Heavy-metal-associated domain AP3564_13360 PF01966 HD domain AP3564_13390 PF07690 Major Facilitator Superfamily AP3564_13400 PF00056 lactate/malate dehydrogenase, NAD binding domain AP3564_13400 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AP3564_13405 PF03475 3-alpha domain AP3564_13405 PF03473 MOSC domain AP3564_13425 PF03972 MmgE/PrpD family AP3564_13430 PF00285 Citrate synthase, C-terminal domain AP3564_13445 PF13089 Polyphosphate kinase N-terminal domain AP3564_13445 PF17941 Polyphosphate kinase C-terminal domain 1 AP3564_13445 PF13090 Polyphosphate kinase C-terminal domain 2 AP3564_13445 PF02503 Polyphosphate kinase middle domain AP3564_13450 PF00248 Aldo/keto reductase family AP3564_13455 PF01266 FAD dependent oxidoreductase AP3564_13455 PF00355 Rieske [2Fe-2S] domain AP3564_13460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP3564_13460 PF13492 GAF domain AP3564_13460 PF06580 Histidine kinase AP3564_13460 PF07694 5TMR of 5TMR-LYT AP3564_13465 PF04397 LytTr DNA-binding domain AP3564_13465 PF00072 Response regulator receiver domain AP3564_13470 PF02554 Carbon starvation protein CstA AP3564_13470 PF13722 5TM C-terminal transporter carbon starvation CstA AP3564_13475 PF00440 Bacterial regulatory proteins, tetR family AP3564_13480 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AP3564_13480 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AP3564_13485 PF01790 Prolipoprotein diacylglyceryl transferase AP3564_13490 PF13186 Iron-sulfur cluster-binding domain AP3564_13490 PF04055 Radical SAM superfamily AP3564_13505 PF00440 Bacterial regulatory proteins, tetR family AP3564_13505 PF13977 BetI-type transcriptional repressor, C-terminal AP3564_13520 PF01323 DSBA-like thioredoxin domain AP3564_13535 PF04542 Sigma-70 region 2 AP3564_13535 PF08281 Sigma-70, region 4 AP3564_13545 PF01047 MarR family AP3564_13550 PF03176 MMPL family AP3564_13555 PF01476 LysM domain AP3564_13555 PF00704 Glycosyl hydrolases family 18 AP3564_13570 PF00313 'Cold-shock' DNA-binding domain AP3564_13575 PF01131 DNA topoisomerase AP3564_13575 PF01751 Toprim domain AP3564_13580 PF08546 Ketopantoate reductase PanE/ApbA C terminal AP3564_13580 PF02558 Ketopantoate reductase PanE/ApbA AP3564_13600 PF07690 Major Facilitator Superfamily AP3564_13630 PF00487 Fatty acid desaturase AP3564_13635 PF07730 Histidine kinase AP3564_13640 PF00196 Bacterial regulatory proteins, luxR family AP3564_13640 PF00072 Response regulator receiver domain AP3564_13650 PF00581 Rhodanese-like domain AP3564_13650 PF00753 Metallo-beta-lactamase superfamily AP3564_13670 PF17326 Family of unknown function (DUF5365) AP3564_13680 PF02600 Disulfide bond formation protein DsbB AP3564_13690 PF00571 CBS domain AP3564_13700 PF00106 short chain dehydrogenase AP3564_13705 PF13185 GAF domain AP3564_13705 PF07730 Histidine kinase AP3564_13710 PF00072 Response regulator receiver domain AP3564_13710 PF00196 Bacterial regulatory proteins, luxR family AP3564_13715 PF00144 Beta-lactamase AP3564_13720 PF00128 Alpha amylase, catalytic domain AP3564_13720 PF16657 Maltogenic Amylase, C-terminal domain AP3564_13730 PF04328 Selenoprotein, putative AP3564_13740 PF01266 FAD dependent oxidoreductase AP3564_13745 PF02597 ThiS family AP3564_13750 PF05690 Thiazole biosynthesis protein ThiG AP3564_13765 PF17912 MalK OB fold domain AP3564_13765 PF00005 ABC transporter AP3564_13765 PF03459 TOBE domain AP3564_13770 PF13556 PucR C-terminal helix-turn-helix domain AP3564_13795 PF00733 Asparagine synthase AP3564_13795 PF13537 Glutamine amidotransferase domain AP3564_13800 PF01554 MatE AP3564_13805 PF12833 Helix-turn-helix domain AP3564_13805 PF02311 AraC-like ligand binding domain AP3564_13810 PF16657 Maltogenic Amylase, C-terminal domain AP3564_13810 PF00128 Alpha amylase, catalytic domain AP3564_13810 PF02903 Alpha amylase, N-terminal ig-like domain AP3564_13815 PF13416 Bacterial extracellular solute-binding protein AP3564_13820 PF00528 Binding-protein-dependent transport system inner membrane component AP3564_13825 PF00528 Binding-protein-dependent transport system inner membrane component AP3564_13830 PF02903 Alpha amylase, N-terminal ig-like domain AP3564_13830 PF00128 Alpha amylase, catalytic domain AP3564_13835 PF01055 Glycosyl hydrolases family 31 AP3564_13835 PF16338 Domain of unknown function (DUF4968) AP3564_13835 PF17137 Domain of unknown function (DUF5110) AP3564_13835 PF13802 Galactose mutarotase-like AP3564_13840 PF00356 Bacterial regulatory proteins, lacI family AP3564_13855 PF01527 Transposase AP3564_13880 PF02583 Metal-sensitive transcriptional repressor AP3564_13885 PF01206 Sulfurtransferase TusA AP3564_13890 PF13686 DsrE/DsrF/DrsH-like family AP3564_13900 PF00582 Universal stress protein family AP3564_13905 PF03601 Conserved hypothetical protein 698 AP3564_13920 PF02683 Cytochrome C biogenesis protein transmembrane region AP3564_13925 PF00578 AhpC/TSA family AP3564_13930 PF00486 Transcriptional regulatory protein, C terminal AP3564_13930 PF00072 Response regulator receiver domain AP3564_13935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP3564_13935 PF00512 His Kinase A (phospho-acceptor) domain AP3564_13935 PF00672 HAMP domain AP3564_13940 PF01476 LysM domain AP3564_13940 PF00704 Glycosyl hydrolases family 18 AP3564_13945 PF13686 DsrE/DsrF/DrsH-like family AP3564_13955 PF00581 Rhodanese-like domain AP3564_13955 PF00753 Metallo-beta-lactamase superfamily AP3564_13960 PF01209 ubiE/COQ5 methyltransferase family AP3564_13970 PF02583 Metal-sensitive transcriptional repressor AP3564_13975 PF01206 Sulfurtransferase TusA AP3564_13980 PF13686 DsrE/DsrF/DrsH-like family AP3564_13990 PF00581 Rhodanese-like domain AP3564_13995 PF00581 Rhodanese-like domain AP3564_13995 PF01206 Sulfurtransferase TusA AP3564_14000 PF00581 Rhodanese-like domain AP3564_14000 PF00753 Metallo-beta-lactamase superfamily AP3564_14005 PF01206 Sulfurtransferase TusA AP3564_14010 PF01925 Sulfite exporter TauE/SafE AP3564_14035 PF03466 LysR substrate binding domain AP3564_14035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP3564_14050 PF00403 Heavy-metal-associated domain AP3564_14055 PF00403 Heavy-metal-associated domain AP3564_14095 PF00171 Aldehyde dehydrogenase family AP3564_14095 PF00465 Iron-containing alcohol dehydrogenase AP3564_14125 PF04463 Protein of unknown function (DUF523) AP3564_14135 PF03744 6-carboxyhexanoate--CoA ligase AP3564_14145 PF00155 Aminotransferase class I and II AP3564_14155 PF00158 Sigma-54 interaction domain AP3564_14155 PF00989 PAS fold AP3564_14155 PF02954 Bacterial regulatory protein, Fis family AP3564_14160 PF00753 Metallo-beta-lactamase superfamily AP3564_14165 PF00465 Iron-containing alcohol dehydrogenase AP3564_14180 PF11188 Protein of unknown function (DUF2975) AP3564_14185 PF13443 Cro/C1-type HTH DNA-binding domain AP3564_14210 PF01758 Sodium Bile acid symporter family AP3564_14220 PF08378 Nuclease-related domain AP3564_14225 PF00005 ABC transporter AP3564_14225 PF16326 ABC transporter C-terminal domain AP3564_14225 PF12848 ABC transporter AP3564_14230 PF08241 Methyltransferase domain AP3564_14235 PF00005 ABC transporter AP3564_14240 PF00440 Bacterial regulatory proteins, tetR family AP3564_14245 PF02770 Acyl-CoA dehydrogenase, middle domain AP3564_14245 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AP3564_14245 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AP3564_14250 PF13193 AMP-binding enzyme C-terminal domain AP3564_14250 PF00501 AMP-binding enzyme AP3564_14255 PF00289 Biotin carboxylase, N-terminal domain AP3564_14255 PF02785 Biotin carboxylase C-terminal domain AP3564_14255 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AP3564_14260 PF00364 Biotin-requiring enzyme AP3564_14265 PF00682 HMGL-like AP3564_14270 PF00378 Enoyl-CoA hydratase/isomerase AP3564_14275 PF01039 Carboxyl transferase domain AP3564_14280 PF03459 TOBE domain AP3564_14280 PF00005 ABC transporter AP3564_14285 PF00528 Binding-protein-dependent transport system inner membrane component AP3564_14290 PF12728 Helix-turn-helix domain AP3564_14290 PF12727 PBP superfamily domain AP3564_14295 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP3564_14300 PF18389 TrmO C-terminal domain AP3564_14300 PF01980 tRNA-methyltransferase O AP3564_14315 PF00106 short chain dehydrogenase AP3564_14330 PF09383 NIL domain AP3564_14330 PF00005 ABC transporter AP3564_14340 PF00005 ABC transporter AP3564_14340 PF09383 NIL domain AP3564_14345 PF00528 Binding-protein-dependent transport system inner membrane component AP3564_14350 PF01022 Bacterial regulatory protein, arsR family AP3564_14355 PF01758 Sodium Bile acid symporter family AP3564_14360 PF01451 Low molecular weight phosphotyrosine protein phosphatase AP3564_14365 PF00155 Aminotransferase class I and II AP3564_14365 PF00392 Bacterial regulatory proteins, gntR family AP3564_14370 PF01810 LysE type translocator AP3564_14375 PF00266 Aminotransferase class-V AP3564_14380 PF00717 Peptidase S24-like AP3564_14380 PF01726 LexA DNA binding domain AP3564_14385 PF13847 Methyltransferase domain AP3564_14420 PF13007 Transposase C of IS166 homeodomain AP3564_14420 PF13817 IS66 C-terminal element AP3564_14420 PF13005 zinc-finger binding domain of transposase IS66 AP3564_14420 PF03050 Transposase IS66 family AP3564_14435 PF00392 Bacterial regulatory proteins, gntR family AP3564_14440 PF00005 ABC transporter AP3564_14460 PF09299 Mu transposase, C-terminal AP3564_14460 PF00665 Integrase core domain AP3564_14485 PF00486 Transcriptional regulatory protein, C terminal AP3564_14485 PF00072 Response regulator receiver domain AP3564_14490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP3564_14490 PF00512 His Kinase A (phospho-acceptor) domain AP3564_14510 PF00005 ABC transporter AP3564_14515 PF08240 Alcohol dehydrogenase GroES-like domain AP3564_14515 PF00107 Zinc-binding dehydrogenase AP3564_14520 PF00440 Bacterial regulatory proteins, tetR family AP3564_14525 PF00106 short chain dehydrogenase AP3564_14530 PF06719 AraC-type transcriptional regulator N-terminus AP3564_14530 PF12833 Helix-turn-helix domain AP3564_14535 PF00248 Aldo/keto reductase family AP3564_14570 PF03649 Uncharacterised protein family (UPF0014) AP3564_14590 PF01967 MoaC family AP3564_14605 PF02391 MoaE protein AP3564_14610 PF03205 Molybdopterin guanine dinucleotide synthesis protein B AP3564_14615 PF00994 Probable molybdopterin binding domain AP3564_14615 PF03454 MoeA C-terminal region (domain IV) AP3564_14615 PF03453 MoeA N-terminal region (domain I and II) AP3564_14620 PF12804 MobA-like NTP transferase domain AP3564_14625 PF00994 Probable molybdopterin binding domain AP3564_14655 PF01883 Iron-sulfur cluster assembly protein AP3564_14665 PF13186 Iron-sulfur cluster-binding domain AP3564_14665 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AP3564_14665 PF04055 Radical SAM superfamily AP3564_14670 PF00325 Bacterial regulatory proteins, crp family AP3564_14670 PF00027 Cyclic nucleotide-binding domain AP3564_14680 PF14256 YwiC-like protein AP3564_14685 PF04405 Domain of Unknown function (DUF542) AP3564_14685 PF01814 Hemerythrin HHE cation binding domain AP3564_14695 PF00521 DNA gyrase/topoisomerase IV, subunit A AP3564_14695 PF03989 DNA gyrase C-terminal domain, beta-propeller AP3564_14700 PF01751 Toprim domain AP3564_14700 PF00204 DNA gyrase B AP3564_14700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP3564_14700 PF00986 DNA gyrase B subunit, carboxyl terminus AP3564_14705 PF13380 CoA binding domain AP3564_14710 PF02660 Glycerol-3-phosphate acyltransferase AP3564_14715 PF04851 Type III restriction enzyme, res subunit AP3564_14715 PF00929 Exonuclease AP3564_14715 PF13307 Helicase C-terminal domain AP3564_14725 PF00909 Ammonium Transporter Family AP3564_14730 PF09587 Bacterial capsule synthesis protein PGA_cap AP3564_14735 PF01521 Iron-sulphur cluster biosynthesis AP3564_14745 PF03061 Thioesterase superfamily AP3564_14755 PF08177 Small acid-soluble spore protein N family AP3564_14760 PF00578 AhpC/TSA family AP3564_14765 PF00694 Aconitase C-terminal domain AP3564_14765 PF00330 Aconitase family (aconitate hydratase) AP3564_14775 PF08179 Small acid-soluble spore protein P family AP3564_14785 PF11084 Protein of unknown function (DUF2621) AP3564_14790 PF07301 Protein of unknown function (DUF1453) AP3564_14795 PF00072 Response regulator receiver domain AP3564_14800 PF02683 Cytochrome C biogenesis protein transmembrane region AP3564_14805 PF03672 Uncharacterised protein family (UPF0154) AP3564_14810 PF10747 Sporulation inhibitor of replication protein SirA AP3564_14815 PF00456 Transketolase, thiamine diphosphate binding domain AP3564_14815 PF02780 Transketolase, C-terminal domain AP3564_14815 PF02779 Transketolase, pyrimidine binding domain AP3564_14820 PF05979 Bacterial protein of unknown function (DUF896) AP3564_14825 PF00239 Resolvase, N terminal domain AP3564_14830 PF01476 LysM domain AP3564_14835 PF01726 LexA DNA binding domain AP3564_14835 PF00717 Peptidase S24-like AP3564_14840 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AP3564_14840 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AP3564_14845 PF01553 Acyltransferase AP3564_14850 PF03641 Possible lysine decarboxylase AP3564_14855 PF00248 Aldo/keto reductase family AP3564_14860 PF01738 Dienelactone hydrolase family AP3564_14865 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AP3564_14875 PF00356 Bacterial regulatory proteins, lacI family AP3564_14875 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AP3564_14900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP3564_14900 PF07730 Histidine kinase AP3564_14905 PF00196 Bacterial regulatory proteins, luxR family AP3564_14905 PF00072 Response regulator receiver domain AP3564_14910 PF00293 NUDIX domain AP3564_14910 PF13344 Haloacid dehalogenase-like hydrolase AP3564_14915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP3564_14915 PF02743 Cache domain AP3564_14915 PF00672 HAMP domain AP3564_14920 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AP3564_14920 PF13542 Helix-turn-helix domain of transposase family ISL3 AP3564_14920 PF01610 Transposase AP3564_14925 PF00563 EAL domain AP3564_14925 PF12792 CSS motif domain associated with EAL AP3564_14930 PF01381 Helix-turn-helix AP3564_14955 PF05145 Transition state regulatory protein AbrB AP3564_14960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP3564_14960 PF03466 LysR substrate binding domain AP3564_14975 PF00171 Aldehyde dehydrogenase family AP3564_14980 PF00486 Transcriptional regulatory protein, C terminal AP3564_14980 PF00072 Response regulator receiver domain AP3564_14985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP3564_14985 PF00672 HAMP domain AP3564_14985 PF00512 His Kinase A (phospho-acceptor) domain AP3564_14995 PF01891 Cobalt uptake substrate-specific transmembrane region AP3564_15025 PF00005 ABC transporter AP3564_15040 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AP3564_15040 PF13542 Helix-turn-helix domain of transposase family ISL3 AP3564_15040 PF01610 Transposase AP3564_15045 PF01609 Transposase DDE domain AP3564_15065 PF00106 short chain dehydrogenase AP3564_15085 PF01741 Large-conductance mechanosensitive channel, MscL AP3564_15175 PF00535 Glycosyl transferase family 2 AP3564_15185 PF00990 Diguanylate cyclase, GGDEF domain AP3564_15185 PF00072 Response regulator receiver domain AP3564_15190 PF00072 Response regulator receiver domain AP3564_15190 PF01584 CheW-like domain AP3564_15195 PF12323 Helix-turn-helix domain AP3564_15195 PF01385 Probable transposase AP3564_15195 PF07282 Putative transposase DNA-binding domain AP3564_15310 PF00294 pfkB family carbohydrate kinase AP3564_15335 PF00528 Binding-protein-dependent transport system inner membrane component AP3564_15340 PF00528 Binding-protein-dependent transport system inner membrane component AP3564_15345 PF01547 Bacterial extracellular solute-binding protein AP3564_15355 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AP3564_15355 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AP3564_15360 PF00392 Bacterial regulatory proteins, gntR family AP3564_15360 PF07702 UTRA domain AP3564_15370 PF01380 SIS domain AP3564_15385 PF13361 UvrD-like helicase C-terminal domain AP3564_15385 PF00580 UvrD/REP helicase N-terminal domain AP3564_15395 PF12705 PD-(D/E)XK nuclease superfamily AP3564_15395 PF13361 UvrD-like helicase C-terminal domain AP3564_15395 PF00580 UvrD/REP helicase N-terminal domain AP3564_15400 PF08774 VRR-NUC domain AP3564_15400 PF04851 Type III restriction enzyme, res subunit AP3564_15405 PF01555 DNA methylase AP3564_15405 PF18273 Type III R-M EcoP15I C-terminal domain AP3564_15475 PF00665 Integrase core domain AP3564_15475 PF13276 HTH-like domain AP3564_15475 PF13333 Integrase core domain AP3564_15480 PF00005 ABC transporter AP3564_15480 PF00664 ABC transporter transmembrane region AP3564_15530 PF02447 GntP family permease AP3564_15535 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AP3564_15535 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AP3564_15540 PF00356 Bacterial regulatory proteins, lacI family AP3564_15545 PF01891 Cobalt uptake substrate-specific transmembrane region AP3564_15545 PF13190 PDGLE domain AP3564_15550 PF02361 Cobalt transport protein AP3564_15575 PF02687 FtsX-like permease family AP3564_15575 PF12704 MacB-like periplasmic core domain AP3564_15575 PF00005 ABC transporter AP3564_15585 PF12431 Transcriptional regulator AP3564_15585 PF00072 Response regulator receiver domain AP3564_15590 PF17203 Single cache domain 3 AP3564_15590 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AP3564_15590 PF00989 PAS fold AP3564_15590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP3564_15595 PF01970 Tripartite tricarboxylate transporter TctA family AP3564_15605 PF03401 Tripartite tricarboxylate transporter family receptor AP3564_15620 PF01411 tRNA synthetases class II (A) AP3564_15620 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AP3564_15620 PF02272 DHHA1 domain AP3564_15630 PF00289 Biotin carboxylase, N-terminal domain AP3564_15630 PF02785 Biotin carboxylase C-terminal domain AP3564_15630 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AP3564_15635 PF00364 Biotin-requiring enzyme AP3564_15640 PF00682 HMGL-like AP3564_15640 PF00364 Biotin-requiring enzyme AP3564_15640 PF02436 Conserved carboxylase domain AP3564_15645 PF00501 AMP-binding enzyme AP3564_15645 PF14535 AMP-binding enzyme C-terminal domain AP3564_15650 PF09339 IclR helix-turn-helix domain AP3564_15650 PF01614 Bacterial transcriptional regulator AP3564_15655 PF09339 IclR helix-turn-helix domain AP3564_15655 PF01614 Bacterial transcriptional regulator AP3564_15700 PF00665 Integrase core domain AP3564_15705 PF00082 Subtilase family AP3564_15750 PF13333 Integrase core domain AP3564_15750 PF00665 Integrase core domain AP3564_15750 PF13276 HTH-like domain AP3564_15765 PF00120 Glutamine synthetase, catalytic domain AP3564_15765 PF03951 Glutamine synthetase, beta-Grasp domain AP3564_15770 PF13411 MerR HTH family regulatory protein AP3564_15775 PF06838 Methionine gamma-lyase AP3564_15780 PF16360 GTP-binding GTPase Middle Region AP3564_15780 PF13167 GTP-binding GTPase N-terminal AP3564_15780 PF01926 50S ribosome-binding GTPase AP3564_15785 PF00004 ATPase family associated with various cellular activities (AAA) AP3564_15785 PF17866 AAA lid domain AP3564_15790 PF17209 Hfq protein AP3564_15800 PF01119 DNA mismatch repair protein, C-terminal domain AP3564_15800 PF08676 MutL C terminal dimerisation domain AP3564_15805 PF01624 MutS domain I AP3564_15805 PF05192 MutS domain III AP3564_15805 PF05190 MutS family domain IV AP3564_15805 PF00488 MutS domain V AP3564_15805 PF05188 MutS domain II AP3564_15810 PF10628 Outer spore coat protein E (CotE) AP3564_15815 PF06133 Control of competence regulator ComK, YlbF/YmcA AP3564_15820 PF00919 Uncharacterized protein family UPF0004 AP3564_15820 PF01938 TRAM domain AP3564_15820 PF04055 Radical SAM superfamily AP3564_15825 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AP3564_15830 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AP3564_15830 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AP3564_15830 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AP3564_15835 PF04232 Stage V sporulation protein S (SpoVS) AP3564_15840 PF13277 YmdB-like protein AP3564_15845 PF12072 Domain of unknown function (DUF3552) AP3564_15845 PF00013 KH domain AP3564_15845 PF01966 HD domain AP3564_15850 PF00154 recA bacterial DNA recombination protein AP3564_15855 PF00994 Probable molybdopterin binding domain AP3564_15855 PF18146 Damage-inducible protein CinA KH domain AP3564_15855 PF02464 Competence-damaged protein AP3564_15860 PF01066 CDP-alcohol phosphatidyltransferase AP3564_15865 PF13464 Domain of unknown function (DUF4115) AP3564_15870 PF11868 Protein of unknown function (DUF3388) AP3564_15875 PF11588 Protein of unknown function (DUF3243) AP3564_15885 PF00675 Insulinase (Peptidase family M16) AP3564_15885 PF05193 Peptidase M16 inactive domain AP3564_15890 PF05193 Peptidase M16 inactive domain AP3564_15900 PF01609 Transposase DDE domain AP3564_15905 PF09397 Ftsk gamma domain AP3564_15905 PF17854 FtsK alpha domain AP3564_15905 PF01580 FtsK/SpoIIIE family AP3564_15910 PF14035 YlzJ-like protein AP3564_15915 PF00574 Clp protease AP3564_15920 PF00753 Metallo-beta-lactamase superfamily AP3564_15920 PF17770 Ribonuclease J C-terminal domain AP3564_15920 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AP3564_15925 PF00701 Dihydrodipicolinate synthetase family AP3564_15930 PF00696 Amino acid kinase family AP3564_15930 PF13840 ACT domain AP3564_15935 PF01118 Semialdehyde dehydrogenase, NAD binding domain AP3564_15935 PF02774 Semialdehyde dehydrogenase, dimerisation domain AP3564_15940 PF02441 Flavoprotein AP3564_15945 PF16924 Dipicolinate synthase subunit A N-terminal domain AP3564_15945 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AP3564_15950 PF05239 PRC-barrel domain AP3564_15955 PF05193 Peptidase M16 inactive domain AP3564_15955 PF00675 Insulinase (Peptidase family M16) AP3564_15960 PF01522 Polysaccharide deacetylase AP3564_15965 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AP3564_15965 PF03725 3' exoribonuclease family, domain 2 AP3564_15965 PF00575 S1 RNA binding domain AP3564_15965 PF00013 KH domain AP3564_15965 PF01138 3' exoribonuclease family, domain 1 AP3564_15970 PF00312 Ribosomal protein S15 AP3564_15975 PF01687 Riboflavin kinase AP3564_15975 PF06574 FAD synthetase AP3564_15980 PF16198 tRNA pseudouridylate synthase B C-terminal domain AP3564_15980 PF01509 TruB family pseudouridylate synthase (N terminal domain) AP3564_15985 PF02033 Ribosome-binding factor A AP3564_15990 PF04456 Protein of unknown function (DUF503) AP3564_15995 PF04760 Translation initiation factor IF-2, N-terminal region AP3564_15995 PF11987 Translation-initiation factor 2 AP3564_15995 PF00009 Elongation factor Tu GTP binding domain AP3564_16000 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family AP3564_16005 PF04296 Protein of unknown function (DUF448) AP3564_16010 PF13184 NusA-like KH domain AP3564_16010 PF00575 S1 RNA binding domain AP3564_16010 PF08529 NusA N-terminal domain AP3564_16015 PF02576 RimP N-terminal domain AP3564_16015 PF17384 RimP C-terminal SH3 domain AP3564_16020 PF14480 DNA polymerase III polC-type N-terminus I AP3564_16020 PF00929 Exonuclease AP3564_16020 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AP3564_16020 PF14579 Helix-hairpin-helix motif AP3564_16020 PF07733 Bacterial DNA polymerase III alpha NTPase domain AP3564_16020 PF11490 DNA polymerase III polC-type N-terminus II AP3564_16020 PF02811 PHP domain AP3564_16025 PF03129 Anticodon binding domain AP3564_16025 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AP3564_16025 PF04073 Aminoacyl-tRNA editing domain AP3564_16030 PF02163 Peptidase family M50 AP3564_16030 PF13180 PDZ domain AP3564_16035 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AP3564_16035 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AP3564_16035 PF13288 DXP reductoisomerase C-terminal domain AP3564_16045 PF01255 Putative undecaprenyl diphosphate synthase AP3564_16050 PF01765 Ribosome recycling factor AP3564_16055 PF00696 Amino acid kinase family AP3564_16060 PF00889 Elongation factor TS AP3564_16065 PF00318 Ribosomal protein S2 AP3564_16075 PF04545 Sigma-70, region 4 AP3564_16075 PF04542 Sigma-70 region 2 AP3564_16075 PF04539 Sigma-70 region 3 AP3564_16080 PF03975 CheD chemotactic sensory transduction AP3564_16085 PF04509 CheC-like family AP3564_16090 PF01584 CheW-like domain AP3564_16095 PF01627 Hpt domain AP3564_16095 PF07194 P2 response regulator binding domain AP3564_16095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP3564_16095 PF02895 Signal transducing histidine kinase, homodimeric domain AP3564_16095 PF01584 CheW-like domain AP3564_16100 PF00072 Response regulator receiver domain AP3564_16100 PF01339 CheB methylesterase AP3564_16105 PF10609 NUBPL iron-transfer P-loop NTPase AP3564_16110 PF00448 SRP54-type protein, GTPase domain AP3564_16115 PF00771 FHIPEP family AP3564_16120 PF01312 FlhB HrpN YscU SpaS Family AP3564_16125 PF01311 Bacterial export proteins, family 1 AP3564_16130 PF01313 Bacterial export proteins, family 3 AP3564_16135 PF00813 FliP family AP3564_16140 PF04347 Flagellar biosynthesis protein, FliO AP3564_16145 PF00072 Response regulator receiver domain AP3564_16150 PF04509 CheC-like family AP3564_16150 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AP3564_16155 PF02154 Flagellar motor switch protein FliM AP3564_16155 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AP3564_16160 PF03748 Flagellar basal body-associated protein FliL AP3564_16165 PF06289 Flagellar and Swarming motility proteins AP3564_16170 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AP3564_16170 PF00460 Flagella basal body rod protein AP3564_16175 PF03963 Flagellar hook capping protein - N-terminal region AP3564_16180 PF02120 Flagellar hook-length control protein FliK AP3564_16190 PF02050 Flagellar FliJ protein AP3564_16195 PF02874 ATP synthase alpha/beta family, beta-barrel domain AP3564_16195 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AP3564_16195 PF18269 T3SS EscN ATPase C-terminal domain AP3564_16200 PF02108 Flagellar assembly protein FliH AP3564_16205 PF14842 FliG N-terminal domain AP3564_16205 PF14841 FliG middle domain AP3564_16205 PF01706 FliG C-terminal domain AP3564_16210 PF08345 Flagellar M-ring protein C-terminal AP3564_16210 PF01514 Secretory protein of YscJ/FliF family AP3564_16215 PF02049 Flagellar hook-basal body complex protein FliE AP3564_16220 PF00460 Flagella basal body rod protein AP3564_16220 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AP3564_16225 PF00460 Flagella basal body rod protein AP3564_16230 PF08222 CodY helix-turn-helix domain AP3564_16230 PF06018 CodY GAF-like domain AP3564_16235 PF00004 ATPase family associated with various cellular activities (AAA) AP3564_16235 PF07724 AAA domain (Cdc48 subfamily) AP3564_16235 PF10431 C-terminal, D2-small domain, of ClpB protein AP3564_16240 PF00227 Proteasome subunit AP3564_16245 PF00589 Phage integrase family AP3564_16245 PF02899 Phage integrase, N-terminal SAM-like domain AP3564_16250 PF01134 Glucose inhibited division protein A AP3564_16255 PF01751 Toprim domain AP3564_16255 PF01396 Topoisomerase DNA binding C4 zinc finger AP3564_16255 PF01131 DNA topoisomerase AP3564_16260 PF02481 DNA recombination-mediator protein A AP3564_16265 PF00549 CoA-ligase AP3564_16265 PF02629 CoA binding domain AP3564_16270 PF08442 ATP-grasp domain AP3564_16270 PF00549 CoA-ligase AP3564_16275 PF01312 FlhB HrpN YscU SpaS Family AP3564_16285 PF01351 Ribonuclease HII AP3564_16290 PF01926 50S ribosome-binding GTPase AP3564_16295 PF10502 Signal peptidase, peptidase S26 AP3564_16300 PF01245 Ribosomal protein L19 AP3564_16305 PF01746 tRNA (Guanine-1)-methyltransferase AP3564_16310 PF05239 PRC-barrel domain AP3564_16310 PF01782 RimM N-terminal domain AP3564_16315 PF11068 YlqD protein AP3564_16330 PF00886 Ribosomal protein S16 AP3564_16335 PF02881 SRP54-type protein, helical bundle domain AP3564_16335 PF02978 Signal peptide binding domain AP3564_16335 PF00448 SRP54-type protein, GTPase domain AP3564_16340 PF04297 Putative helix-turn-helix protein, YlxM / p13 like AP3564_16345 PF00448 SRP54-type protein, GTPase domain AP3564_16345 PF02881 SRP54-type protein, helical bundle domain AP3564_16350 PF06470 SMC proteins Flexible Hinge Domain AP3564_16350 PF02463 RecF/RecN/SMC N terminal domain AP3564_16355 PF00035 Double-stranded RNA binding motif AP3564_16355 PF14622 Ribonuclease-III-like AP3564_16360 PF00550 Phosphopantetheine attachment site AP3564_16370 PF00698 Acyl transferase domain AP3564_16375 PF02504 Fatty acid synthesis protein AP3564_16380 PF08279 HTH domain AP3564_16380 PF01575 MaoC like domain AP3564_16385 PF17191 RecG wedge domain AP3564_16385 PF00270 DEAD/DEAH box helicase AP3564_16385 PF00271 Helicase conserved C-terminal domain AP3564_16390 PF02734 DAK2 domain AP3564_16390 PF13684 Dihydroxyacetone kinase family AP3564_16395 PF03780 Asp23 family, cell envelope-related function AP3564_16400 PF00830 Ribosomal L28 family AP3564_16405 PF08183 Stage V sporulation protein family AP3564_16410 PF00834 Ribulose-phosphate 3 epimerase family AP3564_16415 PF03193 RsgA GTPase AP3564_16415 PF16745 RsgA N-terminal domain AP3564_16420 PF03793 PASTA domain AP3564_16420 PF00069 Protein kinase domain AP3564_16430 PF04055 Radical SAM superfamily AP3564_16435 PF01189 16S rRNA methyltransferase RsmB/F AP3564_16435 PF01029 NusB family AP3564_16445 PF00271 Helicase conserved C-terminal domain AP3564_16445 PF17764 3′ DNA-binding domain (3′BD) AP3564_16445 PF04851 Type III restriction enzyme, res subunit AP3564_16445 PF18074 Primosomal protein N C-terminal domain AP3564_16445 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AP3564_16450 PF04127 DNA / pantothenate metabolism flavoprotein AP3564_16450 PF02441 Flavoprotein AP3564_16455 PF01192 RNA polymerase Rpb6 AP3564_16460 PF00625 Guanylate kinase AP3564_16465 PF04025 Domain of unknown function (DUF370) AP3564_16470 PF03755 YicC-like family, N-terminal region AP3564_16470 PF08340 Domain of unknown function (DUF1732) AP3564_16475 PF00689 Cation transporting ATPase, C-terminus AP3564_16475 PF00690 Cation transporter/ATPase, N-terminus AP3564_16485 PF01903 CbiX AP3564_16490 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AP3564_16500 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AP3564_16500 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AP3564_16510 PF01747 ATP-sulfurylase AP3564_16510 PF14306 PUA-like domain AP3564_16515 PF01507 Phosphoadenosine phosphosulfate reductase family AP3564_16520 PF00156 Phosphoribosyl transferase domain AP3564_16525 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AP3564_16530 PF01180 Dihydroorotate dehydrogenase AP3564_16535 PF00970 Oxidoreductase FAD-binding domain AP3564_16535 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B AP3564_16540 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AP3564_16540 PF02142 MGS-like domain AP3564_16540 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AP3564_16545 PF00117 Glutamine amidotransferase class-I AP3564_16545 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AP3564_16550 PF01979 Amidohydrolase family AP3564_16555 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AP3564_16555 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AP3564_16560 PF00860 Permease family AP3564_16565 PF00156 Phosphoribosyl transferase domain AP3564_16570 PF01479 S4 domain AP3564_16570 PF00849 RNA pseudouridylate synthase AP3564_16575 PF01252 Signal peptidase (SPase) II AP3564_16580 PF01258 Prokaryotic dksA/traR C4-type zinc finger AP3564_16585 PF06827 Zinc finger found in FPG and IleRS AP3564_16585 PF08264 Anticodon-binding domain of tRNA AP3564_16585 PF00133 tRNA synthetases class I (I, L, M and V) AP3564_16590 PF05103 DivIVA protein AP3564_16595 PF17774 Putative RNA-binding domain in YlmH AP3564_16595 PF01479 S4 domain AP3564_16600 PF02325 YGGT family AP3564_16605 PF04472 Cell division protein SepF AP3564_16610 PF01168 Alanine racemase, N-terminal domain AP3564_16620 PF05239 PRC-barrel domain AP3564_16625 PF04545 Sigma-70, region 4 AP3564_16625 PF04539 Sigma-70 region 3 AP3564_16625 PF04542 Sigma-70 region 2 AP3564_16630 PF04542 Sigma-70 region 2 AP3564_16630 PF04545 Sigma-70, region 4 AP3564_16635 PF03419 Sporulation factor SpoIIGA AP3564_16640 PF12327 FtsZ family, C-terminal domain AP3564_16640 PF00091 Tubulin/FtsZ family, GTPase domain AP3564_16645 PF02491 SHS2 domain inserted in FTSA AP3564_16650 PF06947 Protein of unknown function (DUF1290) AP3564_16655 PF05949 Bacterial protein of unknown function (DUF881) AP3564_16660 PF05949 Bacterial protein of unknown function (DUF881) AP3564_16665 PF08478 POTRA domain, FtsQ-type AP3564_16670 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AP3564_16670 PF01565 FAD binding domain AP3564_16675 PF03033 Glycosyltransferase family 28 N-terminal domain AP3564_16675 PF04101 Glycosyltransferase family 28 C-terminal domain AP3564_16680 PF01098 Cell cycle protein AP3564_16685 PF02875 Mur ligase family, glutamate ligase domain AP3564_16685 PF08245 Mur ligase middle domain AP3564_16690 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AP3564_16690 PF00953 Glycosyl transferase family 4 AP3564_16695 PF08245 Mur ligase middle domain AP3564_16695 PF01225 Mur ligase family, catalytic domain AP3564_16695 PF02875 Mur ligase family, glutamate ligase domain AP3564_16700 PF00905 Penicillin binding protein transpeptidase domain AP3564_16700 PF03717 Penicillin-binding Protein dimerisation domain AP3564_16700 PF03793 PASTA domain AP3564_16715 PF01795 MraW methylase family AP3564_16720 PF02381 MraZ protein, putative antitoxin-like AP3564_16725 PF10079 Bacillithiol biosynthesis BshC AP3564_16735 PF02558 Ketopantoate reductase PanE/ApbA AP3564_16735 PF08546 Ketopantoate reductase PanE/ApbA C terminal AP3564_16740 PF00583 Acetyltransferase (GNAT) family AP3564_16755 PF01783 Ribosomal L32p protein family AP3564_16760 PF02620 Large ribosomal RNA subunit accumulation protein YceD AP3564_16765 PF05636 HIGH Nucleotidyl Transferase AP3564_16770 PF05362 Lon protease (S16) C-terminal proteolytic domain AP3564_16770 PF13180 PDZ domain AP3564_16775 PF01734 Patatin-like phospholipase AP3564_16780 PF07670 Nucleoside recognition AP3564_16785 PF01467 Cytidylyltransferase-like AP3564_16805 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) AP3564_16810 PF06133 Control of competence regulator ComK, YlbF/YmcA AP3564_16825 PF14003 YlbE-like protein AP3564_16830 PF14071 Putative coat protein AP3564_16835 PF00188 Cysteine-rich secretory protein family AP3564_16835 PF14504 CAP-associated N-terminal AP3564_16845 PF08868 YugN-like family AP3564_16850 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) AP3564_16855 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AP3564_16860 PF00510 Cytochrome c oxidase subunit III AP3564_16865 PF00115 Cytochrome C and Quinol oxidase polypeptide I AP3564_16870 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AP3564_16870 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AP3564_16870 PF00034 Cytochrome c AP3564_16875 PF01040 UbiA prenyltransferase family AP3564_16880 PF02628 Cytochrome oxidase assembly protein AP3564_16885 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AP3564_16890 PF13307 Helicase C-terminal domain AP3564_16895 PF01170 Putative RNA methylase family UPF0020 AP3564_16895 PF02926 THUMP domain AP3564_16905 PF05103 DivIVA protein AP3564_16910 PF11122 Inner spore coat protein D AP3564_16915 PF13482 RNase_H superfamily AP3564_16920 PF00271 Helicase conserved C-terminal domain AP3564_16920 PF09369 Domain of unknown function (DUF1998) AP3564_16920 PF00270 DEAD/DEAH box helicase AP3564_16930 PF14179 YppG-like protein AP3564_16940 PF08807 Bacterial domain of unknown function (DUF1798) AP3564_16950 PF10720 Protein of unknown function (DUF2515) AP3564_16955 PF03838 Recombination protein U AP3564_16960 PF00912 Transglycosylase AP3564_16960 PF00905 Penicillin binding protein transpeptidase domain AP3564_16970 PF00633 Helix-hairpin-helix motif AP3564_16970 PF00730 HhH-GPD superfamily base excision DNA repair protein AP3564_16970 PF10576 Iron-sulfur binding domain of endonuclease III AP3564_16975 PF07261 Replication initiation and membrane attachment AP3564_16980 PF00152 tRNA synthetases class II (D, K and N) AP3564_16980 PF01336 OB-fold nucleic acid binding domain AP3564_16985 PF00155 Aminotransferase class I and II AP3564_16995 PF14084 Protein of unknown function (DUF4264) AP3564_17005 PF02261 Aspartate decarboxylase AP3564_17010 PF02569 Pantoate-beta-alanine ligase AP3564_17015 PF02548 Ketopantoate hydroxymethyltransferase AP3564_17020 PF02237 Biotin protein ligase C terminal domain AP3564_17020 PF08279 HTH domain AP3564_17020 PF03099 Biotin/lipoate A/B protein ligase family AP3564_17025 PF01743 Poly A polymerase head domain AP3564_17025 PF12627 Probable RNA and SrmB- binding site of polymerase A AP3564_17025 PF13735 tRNA nucleotidyltransferase domain 2 putative AP3564_17030 PF00534 Glycosyl transferases group 1 AP3564_17030 PF13439 Glycosyltransferase Family 4 AP3564_17035 PF02142 MGS-like domain AP3564_17040 PF01113 Dihydrodipicolinate reductase, N-terminus AP3564_17040 PF05173 Dihydrodipicolinate reductase, C-terminus AP3564_17045 PF03819 MazG nucleotide pyrophosphohydrolase domain AP3564_17050 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AP3564_17050 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AP3564_17055 PF09577 Sporulation protein YpjB (SpoYpjB) AP3564_17060 PF07187 Protein of unknown function (DUF1405) AP3564_17075 PF01235 Sodium:alanine symporter family AP3564_17080 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AP3564_17080 PF00032 Cytochrome b(C-terminal)/b6/petD AP3564_17085 PF00033 Cytochrome b/b6/petB AP3564_17090 PF00355 Rieske [2Fe-2S] domain AP3564_17095 PF10673 Protein of unknown function (DUF2487) AP3564_17110 PF08864 UPF0302 domain AP3564_17110 PF08858 IDEAL domain AP3564_17125 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AP3564_17130 PF02153 Prephenate dehydrogenase AP3564_17130 PF01842 ACT domain AP3564_17135 PF00155 Aminotransferase class I and II AP3564_17140 PF00290 Tryptophan synthase alpha chain AP3564_17145 PF00291 Pyridoxal-phosphate dependent enzyme AP3564_17150 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AP3564_17155 PF00218 Indole-3-glycerol phosphate synthase AP3564_17160 PF02885 Glycosyl transferase family, helical bundle domain AP3564_17160 PF00591 Glycosyl transferase family, a/b domain AP3564_17165 PF00425 chorismate binding enzyme AP3564_17165 PF04715 Anthranilate synthase component I, N terminal region AP3564_17170 PF07736 Chorismate mutase type I AP3564_17175 PF01761 3-dehydroquinate synthase AP3564_17180 PF01264 Chorismate synthase AP3564_17185 PF01739 CheR methyltransferase, SAM binding domain AP3564_17185 PF03705 CheR methyltransferase, all-alpha domain AP3564_17190 PF00334 Nucleoside diphosphate kinase AP3564_17195 PF00348 Polyprenyl synthetase AP3564_17200 PF01209 ubiE/COQ5 methyltransferase family AP3564_17205 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 AP3564_17210 PF02081 Tryptophan RNA-binding attenuator protein AP3564_17215 PF01227 GTP cyclohydrolase I AP3564_17220 PF00216 Bacterial DNA-binding protein AP3564_17230 PF08757 CotH kinase protein AP3564_17235 PF09547 Stage IV sporulation protein A (spore_IV_A) AP3564_17245 PF10966 Protein of unknown function (DUF2768) AP3564_17250 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AP3564_17250 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AP3564_17255 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AP3564_17255 PF01926 50S ribosome-binding GTPase AP3564_17265 PF14045 YIEGIA protein AP3564_17275 PF00575 S1 RNA binding domain AP3564_17280 PF01553 Acyltransferase AP3564_17285 PF02224 Cytidylate kinase AP3564_17290 PF07238 PilZ domain AP3564_17290 PF12945 Flagellar protein YcgR AP3564_17295 PF03413 Peptidase propeptide and YPEB domain AP3564_17295 PF14620 YpeB sporulation AP3564_17300 PF07486 Cell Wall Hydrolase AP3564_17300 PF01471 Putative peptidoglycan binding domain AP3564_17305 PF13367 PrsW family intramembrane metalloprotease AP3564_17310 PF00710 Asparaginase, N-terminal AP3564_17310 PF17763 Glutaminase/Asparaginase C-terminal domain AP3564_17320 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AP3564_17320 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AP3564_17325 PF05389 Negative regulator of genetic competence (MecA) AP3564_17330 PF10864 Protein of unknown function (DUF2663) AP3564_17335 PF01476 LysM domain AP3564_17340 PF02517 CPBP intramembrane metalloprotease AP3564_17345 PF00270 DEAD/DEAH box helicase AP3564_17345 PF00271 Helicase conserved C-terminal domain AP3564_17350 PF14493 Helix-turn-helix domain AP3564_17360 PF12822 ECF transporter, substrate-specific component AP3564_17365 PF00719 Inorganic pyrophosphatase AP3564_17370 PF01842 ACT domain AP3564_17370 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AP3564_17370 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AP3564_17380 PF08281 Sigma-70, region 4 AP3564_17380 PF04542 Sigma-70 region 2 AP3564_17385 PF01923 Cobalamin adenosyltransferase AP3564_17390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP3564_17390 PF18698 Histidine kinase sensor domain AP3564_17390 PF00512 His Kinase A (phospho-acceptor) domain AP3564_17390 PF00989 PAS fold AP3564_17390 PF00672 HAMP domain AP3564_17395 PF00486 Transcriptional regulatory protein, C terminal AP3564_17395 PF00072 Response regulator receiver domain AP3564_17400 PF01578 Cytochrome C assembly protein AP3564_17405 PF05140 ResB-like family AP3564_17410 PF00578 AhpC/TSA family AP3564_17415 PF01479 S4 domain AP3564_17415 PF00849 RNA pseudouridylate synthase AP3564_17420 PF07670 Nucleoside recognition AP3564_17425 PF07670 Nucleoside recognition AP3564_17430 PF00768 D-alanyl-D-alanine carboxypeptidase AP3564_17430 PF07943 Penicillin-binding protein 5, C-terminal domain AP3564_17435 PF04079 Segregation and condensation complex subunit ScpB AP3564_17440 PF02616 Segregation and condensation protein ScpA AP3564_17445 PF03745 Domain of unknown function (DUF309) AP3564_17450 PF00583 Acetyltransferase (GNAT) family AP3564_17455 PF00885 6,7-dimethyl-8-ribityllumazine synthase AP3564_17460 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AP3564_17460 PF00925 GTP cyclohydrolase II AP3564_17465 PF00677 Lumazine binding domain AP3564_17470 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AP3564_17470 PF01872 RibD C-terminal domain AP3564_17480 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AP3564_17485 PF06207 Protein of unknown function (DUF1002) AP3564_17490 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AP3564_17490 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AP3564_17495 PF03323 Bacillus/Clostridium GerA spore germination protein AP3564_17500 PF07451 Stage V sporulation protein AD (SpoVAD) AP3564_17505 PF13782 Stage V sporulation protein AB AP3564_17510 PF12164 Stage V sporulation protein AA AP3564_17515 PF04545 Sigma-70, region 4 AP3564_17515 PF04542 Sigma-70 region 2 AP3564_17515 PF04539 Sigma-70 region 3 AP3564_17520 PF13581 Histidine kinase-like ATPase domain AP3564_17525 PF01740 STAS domain AP3564_17530 PF00768 D-alanyl-D-alanine carboxypeptidase AP3564_17530 PF07943 Penicillin-binding protein 5, C-terminal domain AP3564_17535 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AP3564_17535 PF02885 Glycosyl transferase family, helical bundle domain AP3564_17535 PF00591 Glycosyl transferase family, a/b domain AP3564_17540 PF01048 Phosphorylase superfamily AP3564_17545 PF01676 Metalloenzyme superfamily AP3564_17550 PF00589 Phage integrase family AP3564_17550 PF02899 Phage integrase, N-terminal SAM-like domain AP3564_17555 PF14004 Protein of unknown function (DUF4227) AP3564_17560 PF01475 Ferric uptake regulator family AP3564_17565 PF01944 Stage II sporulation protein M AP3564_17575 PF00293 NUDIX domain AP3564_17585 PF00248 Aldo/keto reductase family AP3564_17590 PF00440 Bacterial regulatory proteins, tetR family AP3564_17595 PF01040 UbiA prenyltransferase family AP3564_17610 PF10827 Protein of unknown function (DUF2552) AP3564_17615 PF01521 Iron-sulphur cluster biosynthesis AP3564_17620 PF01209 ubiE/COQ5 methyltransferase family AP3564_17630 PF08863 YolD-like protein AP3564_17635 PF11798 IMS family HHH motif AP3564_17635 PF11799 impB/mucB/samB family C-terminal domain AP3564_17635 PF00817 impB/mucB/samB family AP3564_17645 PF00106 short chain dehydrogenase AP3564_17650 PF00753 Metallo-beta-lactamase superfamily AP3564_17655 PF03807 NADP oxidoreductase coenzyme F420-dependent AP3564_17655 PF14748 Pyrroline-5-carboxylate reductase dimerisation AP3564_17660 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AP3564_17670 PF12706 Beta-lactamase superfamily domain AP3564_17670 PF00753 Metallo-beta-lactamase superfamily AP3564_17675 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AP3564_17675 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AP3564_17680 PF00708 Acylphosphatase AP3564_17685 PF02653 Branched-chain amino acid transport system / permease component AP3564_17700 PF13249 Squalene-hopene cyclase N-terminal domain AP3564_17700 PF13243 Squalene-hopene cyclase C-terminal domain AP3564_17720 PF00005 ABC transporter AP3564_17735 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AP3564_17735 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AP3564_17740 PF11799 impB/mucB/samB family C-terminal domain AP3564_17740 PF11798 IMS family HHH motif AP3564_17740 PF00817 impB/mucB/samB family AP3564_17745 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP3564_17745 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AP3564_17750 PF01493 GXGXG motif AP3564_17750 PF01645 Conserved region in glutamate synthase AP3564_17750 PF04898 Glutamate synthase central domain AP3564_17750 PF00310 Glutamine amidotransferases class-II AP3564_17755 PF03466 LysR substrate binding domain AP3564_17755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP3564_17760 PF01546 Peptidase family M20/M25/M40 AP3564_17760 PF07687 Peptidase dimerisation domain AP3564_17765 PF06081 Aromatic acid exporter family member 1 AP3564_17765 PF11728 Putative aromatic acid exporter C-terminal domain AP3564_17770 PF06491 Disulphide isomerase AP3564_17775 PF02817 e3 binding domain AP3564_17775 PF00364 Biotin-requiring enzyme AP3564_17775 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AP3564_17780 PF02780 Transketolase, C-terminal domain AP3564_17780 PF02779 Transketolase, pyrimidine binding domain AP3564_17785 PF00676 Dehydrogenase E1 component AP3564_17790 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AP3564_17790 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP3564_17795 PF11118 Protein of unknown function (DUF2627) AP3564_17800 PF00072 Response regulator receiver domain AP3564_17800 PF08769 Sporulation initiation factor Spo0A C terminal AP3564_17805 PF05580 SpoIVB peptidase S55 AP3564_17805 PF17820 PDZ domain AP3564_17810 PF13476 AAA domain AP3564_17815 PF01316 Arginine repressor, DNA binding domain AP3564_17815 PF02863 Arginine repressor, C-terminal domain AP3564_17820 PF01479 S4 domain AP3564_17820 PF01728 FtsJ-like methyltransferase AP3564_17825 PF02779 Transketolase, pyrimidine binding domain AP3564_17825 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AP3564_17825 PF02780 Transketolase, C-terminal domain AP3564_17835 PF00348 Polyprenyl synthetase AP3564_17840 PF02609 Exonuclease VII small subunit AP3564_17845 PF13742 OB-fold nucleic acid binding domain AP3564_17845 PF02601 Exonuclease VII, large subunit AP3564_17850 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AP3564_17850 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AP3564_17855 PF01029 NusB family AP3564_17860 PF03780 Asp23 family, cell envelope-related function AP3564_17865 PF02785 Biotin carboxylase C-terminal domain AP3564_17865 PF00289 Biotin carboxylase, N-terminal domain AP3564_17865 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AP3564_17870 PF00364 Biotin-requiring enzyme AP3564_17875 PF12685 SpoIIIAH-like protein AP3564_17885 PF09581 Stage III sporulation protein AF (Spore_III_AF) AP3564_17890 PF09546 Stage III sporulation protein AE (spore_III_AE) AP3564_17895 PF06686 Stage III sporulation protein AC/AD protein family AP3564_17900 PF06686 Stage III sporulation protein AC/AD protein family AP3564_17905 PF09548 Stage III sporulation protein AB (spore_III_AB) AP3564_17915 PF09285 Elongation factor P, C-terminal AP3564_17915 PF08207 Elongation factor P (EF-P) KOW-like domain AP3564_17915 PF01132 Elongation factor P (EF-P) OB domain AP3564_17920 PF00557 Metallopeptidase family M24 AP3564_17920 PF01321 Creatinase/Prolidase N-terminal domain AP3564_17930 PF11085 Conserved membrane protein YqhR AP3564_17935 PF07136 Protein of unknown function (DUF1385) AP3564_17945 PF01734 Patatin-like phospholipase AP3564_17950 PF01609 Transposase DDE domain AP3564_17965 PF07883 Cupin domain AP3564_17990 PF11426 Tn7 transposition regulator TnsC AP3564_17990 PF13401 AAA domain AP3564_17995 PF00665 Integrase core domain AP3564_18000 PF08722 TnsA endonuclease N terminal AP3564_18000 PF08721 TnsA endonuclease C terminal AP3564_18005 PF03477 ATP cone domain AP3564_18005 PF02867 Ribonucleotide reductase, barrel domain AP3564_18005 PF00317 Ribonucleotide reductase, all-alpha domain AP3564_18010 PF03099 Biotin/lipoate A/B protein ligase family AP3564_18015 PF00581 Rhodanese-like domain AP3564_18020 PF02347 Glycine cleavage system P-protein AP3564_18025 PF02347 Glycine cleavage system P-protein AP3564_18030 PF08669 Glycine cleavage T-protein C-terminal barrel domain AP3564_18030 PF01571 Aminomethyltransferase folate-binding domain AP3564_18035 PF00176 SNF2 family N-terminal domain AP3564_18035 PF00271 Helicase conserved C-terminal domain AP3564_18040 PF11079 Bacterial protein YqhG of unknown function AP3564_18045 PF14038 YqzE-like protein AP3564_18070 PF07963 Prokaryotic N-terminal methylation motif AP3564_18075 PF00482 Type II secretion system (T2SS), protein F AP3564_18080 PF00437 Type II/IV secretion system protein AP3564_18095 PF11117 Protein of unknown function (DUF2626) AP3564_18100 PF00753 Metallo-beta-lactamase superfamily AP3564_18115 PF01476 LysM domain AP3564_18115 PF00246 Zinc carboxypeptidase AP3564_18120 PF00884 Sulfatase AP3564_18125 PF00480 ROK family AP3564_18130 PF06014 Bacterial protein of unknown function (DUF910) AP3564_18135 PF01694 Rhomboid family AP3564_18145 PF01812 5-formyltetrahydrofolate cyclo-ligase family AP3564_18150 PF00471 Ribosomal protein L33 AP3564_18165 PF01895 PhoU domain AP3564_18170 PF00005 ABC transporter AP3564_18175 PF00528 Binding-protein-dependent transport system inner membrane component AP3564_18180 PF00528 Binding-protein-dependent transport system inner membrane component AP3564_18185 PF12849 PBP superfamily domain AP3564_18190 PF07690 Major Facilitator Superfamily AP3564_18195 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AP3564_18195 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AP3564_18205 PF04306 Protein of unknown function (DUF456) AP3564_18210 PF02690 Na+/Pi-cotransporter AP3564_18215 PF06691 Protein of unknown function (DUF1189) AP3564_18220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP3564_18220 PF00672 HAMP domain AP3564_18220 PF02743 Cache domain AP3564_18225 PF07690 Major Facilitator Superfamily AP3564_18235 PF04551 GcpE protein AP3564_18250 PF01475 Ferric uptake regulator family AP3564_18255 PF00950 ABC 3 transport family AP3564_18260 PF00005 ABC transporter AP3564_18265 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AP3564_18265 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AP3564_18270 PF11116 Protein of unknown function (DUF2624) AP3564_18275 PF01261 Xylose isomerase-like TIM barrel AP3564_18280 PF00271 Helicase conserved C-terminal domain AP3564_18280 PF00270 DEAD/DEAH box helicase AP3564_18290 PF02401 LytB protein AP3564_18295 PF01784 NIF3 (NGG1p interacting factor 3) AP3564_18300 PF04816 tRNA (adenine(22)-N(1))-methyltransferase AP3564_18305 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AP3564_18310 PF04539 Sigma-70 region 3 AP3564_18310 PF04545 Sigma-70, region 4 AP3564_18310 PF04542 Sigma-70 region 2 AP3564_18310 PF00140 Sigma-70 factor, region 1.2 AP3564_18310 PF03979 Sigma-70 factor, region 1.1 AP3564_18315 PF08275 DNA primase catalytic core, N-terminal domain AP3564_18315 PF10410 DnaB-helicase binding domain of primase AP3564_18315 PF01807 CHC2 zinc finger AP3564_18320 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AP3564_18325 PF03618 Kinase/pyrophosphorylase AP3564_18330 PF08279 HTH domain AP3564_18330 PF00571 CBS domain AP3564_18335 PF02092 Glycyl-tRNA synthetase beta subunit AP3564_18340 PF02091 Glycyl-tRNA synthetase alpha subunit AP3564_18345 PF02565 Recombination protein O C terminal AP3564_18345 PF11967 Recombination protein O N terminal AP3564_18350 PF14006 YqzL-like protein AP3564_18355 PF07650 KH domain AP3564_18355 PF01926 50S ribosome-binding GTPase AP3564_18360 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AP3564_18365 PF01219 Prokaryotic diacylglycerol kinase AP3564_18370 PF02130 Uncharacterized protein family UPF0054 AP3564_18375 PF07697 7TM-HD extracellular AP3564_18375 PF07698 7TM receptor with intracellular HD hydrolase AP3564_18375 PF01966 HD domain AP3564_18380 PF02562 PhoH-like protein AP3564_18385 PF06898 Putative stage IV sporulation protein YqfD AP3564_18390 PF07873 YabP family AP3564_18400 PF12127 SigmaW regulon antibacterial AP3564_18405 PF01972 Serine dehydrogenase proteinase AP3564_18405 PF01957 NfeD-like C-terminal, partner-binding AP3564_18410 PF01964 Radical SAM ThiC family AP3564_18410 PF13667 ThiC-associated domain AP3564_18415 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase AP3564_18425 PF09424 Yqey-like protein AP3564_18430 PF01165 Ribosomal protein S21 AP3564_18435 PF02690 Na+/Pi-cotransporter AP3564_18440 PF01791 DeoC/LacD family aldolase AP3564_18445 PF00919 Uncharacterized protein family UPF0004 AP3564_18445 PF04055 Radical SAM superfamily AP3564_18445 PF01938 TRAM domain AP3564_18450 PF04452 RNA methyltransferase AP3564_18460 PF00226 DnaJ domain AP3564_18460 PF01556 DnaJ C terminal domain AP3564_18460 PF00684 DnaJ central domain AP3564_18465 PF00012 Hsp70 protein AP3564_18475 PF01628 HrcA protein C terminal domain AP3564_18480 PF04055 Radical SAM superfamily AP3564_18480 PF06969 HemN C-terminal domain AP3564_18485 PF06421 GTP-binding protein LepA C-terminus AP3564_18485 PF03144 Elongation factor Tu domain 2 AP3564_18485 PF00679 Elongation factor G C-terminus AP3564_18485 PF00009 Elongation factor Tu GTP binding domain AP3564_18495 PF07454 Stage II sporulation protein P (SpoIIP) AP3564_18500 PF03418 Germination protease AP3564_18505 PF01649 Ribosomal protein S20 AP3564_18510 PF06144 DNA polymerase III, delta subunit AP3564_18515 PF14141 YqzM-like protein AP3564_18520 PF00753 Metallo-beta-lactamase superfamily AP3564_18520 PF13567 Domain of unknown function (DUF4131) AP3564_18520 PF03772 Competence protein AP3564_18525 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AP3564_18530 PF10531 SLBB domain AP3564_18535 PF03807 NADP oxidoreductase coenzyme F420-dependent AP3564_18535 PF14748 Pyrroline-5-carboxylate reductase dimerisation AP3564_18540 PF13649 Methyltransferase domain AP3564_18550 PF01966 HD domain AP3564_18555 PF01467 Cytidylyltransferase-like AP3564_18560 PF01985 CRS1 / YhbY (CRM) domain AP3564_18565 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AP3564_18565 PF01488 Shikimate / quinate 5-dehydrogenase AP3564_18565 PF08501 Shikimate dehydrogenase substrate binding domain AP3564_18570 PF01926 50S ribosome-binding GTPase AP3564_18580 PF08970 Sporulation inhibitor A AP3564_18585 PF04545 Sigma-70, region 4 AP3564_18585 PF04542 Sigma-70 region 2 AP3564_18595 PF01048 Phosphorylase superfamily AP3564_18600 PF07423 Domain of unknown function (DUF1510) AP3564_18605 PF03717 Penicillin-binding Protein dimerisation domain AP3564_18605 PF00905 Penicillin binding protein transpeptidase domain AP3564_18610 PF03449 Transcription elongation factor, N-terminal AP3564_18610 PF01272 Transcription elongation factor, GreA/GreB, C-term AP3564_18630 PF02618 YceG-like family AP3564_18635 PF06949 Protein of unknown function (DUF1292) AP3564_18640 PF03652 Holliday junction resolvase AP3564_18645 PF06135 IreB regulatory phosphoprotein AP3564_18650 PF01411 tRNA synthetases class II (A) AP3564_18650 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AP3564_18650 PF02272 DHHA1 domain AP3564_18655 PF01594 AI-2E family transporter AP3564_18665 PF13538 UvrD-like helicase C-terminal domain AP3564_18665 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain AP3564_18665 PF14490 Helix-hairpin-helix containing domain AP3564_18680 PF00266 Aminotransferase class-V AP3564_18685 PF02082 Transcriptional regulator AP3564_18690 PF12002 MgsA AAA+ ATPase C terminal AP3564_18690 PF05496 Holliday junction DNA helicase RuvB P-loop domain AP3564_18690 PF16193 AAA C-terminal domain AP3564_18695 PF00899 ThiF family AP3564_18705 PF01336 OB-fold nucleic acid binding domain AP3564_18705 PF02938 GAD domain AP3564_18705 PF00152 tRNA synthetases class II (D, K and N) AP3564_18710 PF03129 Anticodon binding domain AP3564_18710 PF13393 Histidyl-tRNA synthetase AP3564_18715 PF08239 Bacterial SH3 domain AP3564_18715 PF01520 N-acetylmuramoyl-L-alanine amidase AP3564_18720 PF02580 D-Tyr-tRNA(Tyr) deacylase AP3564_18725 PF04607 Region found in RelA / SpoT proteins AP3564_18725 PF13291 ACT domain AP3564_18725 PF02824 TGS domain AP3564_18730 PF00156 Phosphoribosyl transferase domain AP3564_18735 PF02272 DHHA1 domain AP3564_18735 PF17768 RecJ OB domain AP3564_18735 PF10141 Single-strand DNA-specific exonuclease, C terminal domain AP3564_18735 PF01368 DHH family AP3564_18740 PF07549 SecD/SecF GG Motif AP3564_18740 PF02355 Protein export membrane protein AP3564_18745 PF13797 Post-transcriptional regulator AP3564_18750 PF14667 Polysaccharide biosynthesis C-terminal domain AP3564_18750 PF01943 Polysaccharide biosynthesis protein AP3564_18755 PF12670 Protein of unknown function (DUF3792) AP3564_18760 PF02699 Preprotein translocase subunit AP3564_18765 PF01702 Queuine tRNA-ribosyltransferase AP3564_18770 PF02547 Queuosine biosynthesis protein AP3564_18775 PF11146 Protein of unknown function (DUF2905) AP3564_18780 PF05496 Holliday junction DNA helicase RuvB P-loop domain AP3564_18780 PF05491 RuvB C-terminal winged helix domain AP3564_18780 PF17864 RuvB AAA lid domain AP3564_18785 PF01330 RuvA N terminal domain AP3564_18785 PF07499 RuvA, C-terminal domain AP3564_18790 PF08955 BofC C-terminal domain AP3564_18790 PF08977 Bypass of Forespore C, N terminal AP3564_18795 PF01709 Transcriptional regulator AP3564_18800 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) AP3564_18805 PF02540 NAD synthase AP3564_18810 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP3564_18815 PF01476 LysM domain AP3564_18820 PF02445 Quinolinate synthetase A protein AP3564_18825 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AP3564_18825 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AP3564_18835 PF00890 FAD binding domain AP3564_18835 PF02910 Fumarate reductase flavoprotein C-term AP3564_18840 PF00266 Aminotransferase class-V AP3564_18845 PF08279 HTH domain AP3564_18845 PF02829 3H domain AP3564_18850 PF00800 Prephenate dehydratase AP3564_18850 PF01842 ACT domain AP3564_18855 PF01842 ACT domain AP3564_18860 PF01926 50S ribosome-binding GTPase AP3564_18860 PF01018 GTP1/OBG AP3564_18860 PF09269 Domain of unknown function (DUF1967) AP3564_18865 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AP3564_18865 PF14682 Sporulation initiation phospho-transferase B, C-terminal AP3564_18870 PF01016 Ribosomal L27 protein AP3564_18875 PF04327 Cysteine protease Prp AP3564_18880 PF00829 Ribosomal prokaryotic L21 protein AP3564_18885 PF00575 S1 RNA binding domain AP3564_18885 PF10150 Ribonuclease E/G family AP3564_18890 PF02163 Peptidase family M50 AP3564_18895 PF01551 Peptidase family M23 AP3564_18900 PF01566 Natural resistance-associated macrophage protein AP3564_18905 PF00881 Nitroreductase family AP3564_18915 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AP3564_18920 PF03775 Septum formation inhibitor MinC, C-terminal domain AP3564_18925 PF04093 rod shape-determining protein MreD AP3564_18930 PF04085 rod shape-determining protein MreC AP3564_18940 PF04002 RadC-like JAB domain AP3564_18945 PF02545 Maf-like protein AP3564_18955 PF08245 Mur ligase middle domain AP3564_18955 PF02875 Mur ligase family, glutamate ligase domain AP3564_18960 PF00133 tRNA synthetases class I (I, L, M and V) AP3564_18960 PF08264 Anticodon-binding domain of tRNA AP3564_18960 PF10458 Valyl tRNA synthetase tRNA binding arm AP3564_18975 PF01476 LysM domain AP3564_18980 PF00202 Aminotransferase class-III AP3564_18985 PF00490 Delta-aminolevulinic acid dehydratase AP3564_18990 PF02602 Uroporphyrinogen-III synthase HemD AP3564_18995 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AP3564_18995 PF03900 Porphobilinogen deaminase, C-terminal domain AP3564_19000 PF01578 Cytochrome C assembly protein AP3564_19005 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AP3564_19005 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AP3564_19005 PF01488 Shikimate / quinate 5-dehydrogenase AP3564_19015 PF01926 50S ribosome-binding GTPase AP3564_19020 PF02190 ATP-dependent protease La (LON) substrate-binding domain AP3564_19020 PF00004 ATPase family associated with various cellular activities (AAA) AP3564_19020 PF05362 Lon protease (S16) C-terminal proteolytic domain AP3564_19025 PF05362 Lon protease (S16) C-terminal proteolytic domain AP3564_19025 PF00004 ATPase family associated with various cellular activities (AAA) AP3564_19030 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP3564_19035 PF06689 ClpX C4-type zinc finger AP3564_19035 PF07724 AAA domain (Cdc48 subfamily) AP3564_19035 PF10431 C-terminal, D2-small domain, of ClpB protein AP3564_19040 PF05698 Bacterial trigger factor protein (TF) C-terminus AP3564_19040 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AP3564_19040 PF05697 Bacterial trigger factor protein (TF) AP3564_19050 PF00694 Aconitase C-terminal domain AP3564_19055 PF00330 Aconitase family (aconitate hydratase) AP3564_19060 PF00180 Isocitrate/isopropylmalate dehydrogenase AP3564_19065 PF08502 LeuA allosteric (dimerisation) domain AP3564_19065 PF00682 HMGL-like AP3564_19070 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AP3564_19070 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AP3564_19075 PF10369 Small subunit of acetolactate synthase AP3564_19075 PF01842 ACT domain AP3564_19080 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AP3564_19080 PF00205 Thiamine pyrophosphate enzyme, central domain AP3564_19080 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AP3564_19085 PF04237 YjbR AP3564_19095 PF12850 Calcineurin-like phosphoesterase superfamily domain AP3564_19100 PF01725 Ham1 family AP3564_19105 PF01138 3' exoribonuclease family, domain 1 AP3564_19105 PF03725 3' exoribonuclease family, domain 2 AP3564_19110 PF10646 Sporulation and spore germination AP3564_19115 PF01177 Asp/Glu/Hydantoin racemase AP3564_19120 PF01047 MarR family AP3564_19125 PF00196 Bacterial regulatory proteins, luxR family AP3564_19130 PF13085 2Fe-2S iron-sulfur cluster binding domain AP3564_19130 PF13183 4Fe-4S dicluster domain AP3564_19135 PF02910 Fumarate reductase flavoprotein C-term AP3564_19135 PF00890 FAD binding domain AP3564_19140 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AP3564_19145 PF10702 Protein of unknown function (DUF2507) AP3564_19150 PF08459 UvrC Helix-hairpin-helix N-terminal AP3564_19150 PF02151 UvrB/uvrC motif AP3564_19150 PF01541 GIY-YIG catalytic domain AP3564_19155 PF00085 Thioredoxin AP3564_19160 PF00766 Electron transfer flavoprotein FAD-binding domain AP3564_19160 PF01012 Electron transfer flavoprotein domain AP3564_19165 PF01012 Electron transfer flavoprotein domain AP3564_19170 PF00440 Bacterial regulatory proteins, tetR family AP3564_19170 PF08359 YsiA-like protein, C-terminal region AP3564_19175 PF00501 AMP-binding enzyme AP3564_19175 PF13193 AMP-binding enzyme C-terminal domain AP3564_19180 PF03994 Domain of Unknown Function (DUF350) AP3564_19185 PF01713 Smr domain AP3564_19185 PF00488 MutS domain V AP3564_19200 PF02674 Colicin V production protein AP3564_19205 PF05164 Cell division protein ZapA AP3564_19210 PF11858 Domain of unknown function (DUF3378) AP3564_19210 PF01351 Ribonuclease HII AP3564_19215 PF03147 Ferredoxin-fold anticodon binding domain AP3564_19215 PF03484 tRNA synthetase B5 domain AP3564_19215 PF01588 Putative tRNA binding domain AP3564_19215 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AP3564_19215 PF03483 B3/4 domain AP3564_19220 PF01409 tRNA synthetases class II core domain (F) AP3564_19220 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AP3564_19230 PF00588 SpoU rRNA Methylase family AP3564_19230 PF08032 RNA 2'-O ribose methyltransferase substrate binding AP3564_19235 PF14098 Small, acid-soluble spore protein I AP3564_19240 PF05343 M42 glutamyl aminopeptidase AP3564_19255 PF00453 Ribosomal protein L20 AP3564_19260 PF01632 Ribosomal protein L35 AP3564_19265 PF05198 Translation initiation factor IF-3, N-terminal domain AP3564_19265 PF00707 Translation initiation factor IF-3, C-terminal domain AP3564_19270 PF08141 Small acid-soluble spore protein H family AP3564_19275 PF03630 Fumble AP3564_19280 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP3564_19285 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AP3564_19285 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AP3564_19285 PF02824 TGS domain AP3564_19285 PF03129 Anticodon binding domain AP3564_19290 PF08812 YtxC-like family AP3564_19295 PF07319 Primosomal protein DnaI N-terminus AP3564_19295 PF01695 IstB-like ATP binding protein AP3564_19300 PF07261 Replication initiation and membrane attachment AP3564_19305 PF03477 ATP cone domain AP3564_19310 PF02675 S-adenosylmethionine decarboxylase AP3564_19315 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AP3564_19315 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AP3564_19320 PF01121 Dephospho-CoA kinase AP3564_19325 PF02659 Putative manganese efflux pump AP3564_19330 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AP3564_19330 PF06827 Zinc finger found in FPG and IleRS AP3564_19330 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AP3564_19335 PF01367 5'-3' exonuclease, C-terminal SAM fold AP3564_19335 PF00476 DNA polymerase family A AP3564_19335 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AP3564_19340 PF01145 SPFH domain / Band 7 family AP3564_19345 PF01145 SPFH domain / Band 7 family AP3564_19350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP3564_19350 PF16736 Single Cache-like AP3564_19350 PF00989 PAS fold AP3564_19350 PF00512 His Kinase A (phospho-acceptor) domain AP3564_19355 PF00072 Response regulator receiver domain AP3564_19355 PF00486 Transcriptional regulatory protein, C terminal AP3564_19360 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AP3564_19360 PF00056 lactate/malate dehydrogenase, NAD binding domain AP3564_19365 PF00180 Isocitrate/isopropylmalate dehydrogenase AP3564_19370 PF00285 Citrate synthase, C-terminal domain AP3564_19375 PF04186 FxsA cytoplasmic membrane protein AP3564_19380 PF00391 PEP-utilising enzyme, mobile domain AP3564_19380 PF00224 Pyruvate kinase, barrel domain AP3564_19380 PF02887 Pyruvate kinase, alpha/beta domain AP3564_19385 PF00365 Phosphofructokinase AP3564_19390 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AP3564_19395 PF01039 Carboxyl transferase domain AP3564_19395 PF17848 Acetyl-coA carboxylase zinc finger domain AP3564_19400 PF00390 Malic enzyme, N-terminal domain AP3564_19400 PF03949 Malic enzyme, NAD binding domain AP3564_19405 PF01336 OB-fold nucleic acid binding domain AP3564_19405 PF02811 PHP domain AP3564_19405 PF14579 Helix-hairpin-helix motif AP3564_19405 PF07733 Bacterial DNA polymerase III alpha NTPase domain AP3564_19405 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AP3564_19410 PF14034 Sporulation protein YtrH AP3564_19420 PF01368 DHH family AP3564_19420 PF02272 DHHA1 domain AP3564_19430 PF03061 Thioesterase superfamily AP3564_19430 PF00571 CBS domain AP3564_19430 PF07085 DRTGG domain AP3564_19430 PF00392 Bacterial regulatory proteins, gntR family AP3564_19445 PF14698 Argininosuccinate lyase C-terminal AP3564_19445 PF00206 Lyase AP3564_19450 PF00764 Arginosuccinate synthase AP3564_19470 PF00871 Acetokinase family AP3564_19475 PF02384 N-6 DNA Methylase AP3564_19480 PF08534 Redoxin AP3564_19485 PF09579 Sporulation protein YtfJ (Spore_YtfJ) AP3564_19495 PF06271 RDD family AP3564_19500 PF01343 Peptidase family S49 AP3564_19505 PF01513 ATP-NAD kinase AP3564_19510 PF00269 Small, acid-soluble spore proteins, alpha/beta type AP3564_19515 PF02568 Thiamine biosynthesis protein (ThiI) AP3564_19515 PF02926 THUMP domain AP3564_19520 PF00266 Aminotransferase class-V AP3564_19525 PF00005 ABC transporter AP3564_19525 PF08402 TOBE domain AP3564_19530 PF00248 Aldo/keto reductase family AP3564_19535 PF06160 Septation ring formation regulator, EzrA AP3564_19540 PF02811 PHP domain AP3564_19545 PF00440 Bacterial regulatory proteins, tetR family AP3564_19550 PF13185 GAF domain AP3564_19555 PF00990 Diguanylate cyclase, GGDEF domain AP3564_19560 PF01479 S4 domain AP3564_19560 PF00163 Ribosomal protein S4/S9 N-terminal domain AP3564_19630 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AP3564_19630 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AP3564_19635 PF01791 DeoC/LacD family aldolase AP3564_19640 PF00107 Zinc-binding dehydrogenase AP3564_19640 PF08240 Alcohol dehydrogenase GroES-like domain AP3564_19650 PF01418 Helix-turn-helix domain, rpiR family AP3564_19650 PF01380 SIS domain AP3564_19730 PF00665 Integrase core domain AP3564_19730 PF09299 Mu transposase, C-terminal