AP3564_17020 21b07b6b3c9eafe594c96f3c52c43dc0 326 Gene3D G3DSA:2.30.30.100 280 326 2.6E-9 T 13-10-2018 AP3564_17020 21b07b6b3c9eafe594c96f3c52c43dc0 326 SUPERFAMILY SSF50037 283 325 5.49E-6 T 13-10-2018 IPR008988 Transcriptional repressor, C-terminal AP3564_17020 21b07b6b3c9eafe594c96f3c52c43dc0 326 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 86 323 6.3E-76 T 13-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AP3564_17020 21b07b6b3c9eafe594c96f3c52c43dc0 326 SUPERFAMILY SSF55681 72 277 1.37E-62 T 13-10-2018 AP3564_17020 21b07b6b3c9eafe594c96f3c52c43dc0 326 Pfam PF03099 Biotin/lipoate A/B protein ligase family 91 214 6.6E-20 T 13-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 AP3564_17020 21b07b6b3c9eafe594c96f3c52c43dc0 326 SUPERFAMILY SSF46785 3 62 1.36E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_17020 21b07b6b3c9eafe594c96f3c52c43dc0 326 Gene3D G3DSA:3.30.930.10 69 278 7.5E-71 T 13-10-2018 AP3564_17020 21b07b6b3c9eafe594c96f3c52c43dc0 326 Hamap MF_00978 Bifunctional ligase/repressor BirA [birA]. 8 326 38.17 T 13-10-2018 IPR030855 Bifunctional ligase/repressor BirA GO:0004077|GO:0006355 KEGG: 00780+6.3.4.15 AP3564_17020 21b07b6b3c9eafe594c96f3c52c43dc0 326 Pfam PF02237 Biotin protein ligase C terminal domain 280 324 9.0E-10 T 13-10-2018 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AP3564_17020 21b07b6b3c9eafe594c96f3c52c43dc0 326 Pfam PF08279 HTH domain 7 60 1.2E-14 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 AP3564_17020 21b07b6b3c9eafe594c96f3c52c43dc0 326 Gene3D G3DSA:1.10.10.10 2 65 1.4E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_09630 31054328ece90310bb0bd4e756bbed91 106 Pfam PF00581 Rhodanese-like domain 6 95 1.4E-14 T 13-10-2018 IPR001763 Rhodanese-like domain AP3564_09630 31054328ece90310bb0bd4e756bbed91 106 SMART SM00450 6 100 5.1E-20 T 13-10-2018 IPR001763 Rhodanese-like domain AP3564_09630 31054328ece90310bb0bd4e756bbed91 106 SUPERFAMILY SSF52821 2 101 7.33E-31 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily AP3564_09630 31054328ece90310bb0bd4e756bbed91 106 Gene3D G3DSA:3.40.250.10 2 98 7.9E-30 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily AP3564_05540 c2cd0ddaaa81477a4262ae3f237e89ba 558 Gene3D G3DSA:3.30.450.90 147 282 5.3E-48 T 13-10-2018 AP3564_05540 c2cd0ddaaa81477a4262ae3f237e89ba 558 SMART SM00382 310 431 1.7E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_05540 c2cd0ddaaa81477a4262ae3f237e89ba 558 SUPERFAMILY SSF160246 9 147 2.35E-42 T 13-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily AP3564_05540 c2cd0ddaaa81477a4262ae3f237e89ba 558 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 377 391 - T 13-10-2018 IPR001482 Type II/IV secretion system protein AP3564_05540 c2cd0ddaaa81477a4262ae3f237e89ba 558 Gene3D G3DSA:3.30.300.160 66 146 1.0E-16 T 13-10-2018 AP3564_05540 c2cd0ddaaa81477a4262ae3f237e89ba 558 Gene3D G3DSA:3.40.50.300 285 557 7.0E-115 T 13-10-2018 AP3564_05540 c2cd0ddaaa81477a4262ae3f237e89ba 558 Pfam PF00437 Type II/IV secretion system protein 189 449 6.6E-84 T 13-10-2018 IPR001482 Type II/IV secretion system protein AP3564_05540 c2cd0ddaaa81477a4262ae3f237e89ba 558 SUPERFAMILY SSF52540 173 554 1.47E-100 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_05540 c2cd0ddaaa81477a4262ae3f237e89ba 558 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 45 151 1.3E-26 T 13-10-2018 IPR007831 General secretory system II, protein E, N-terminal AP3564_01955 687778bc284f2c2d0d498522adea222e 536 Pfam PF01609 Transposase DDE domain 192 465 1.7E-22 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_01955 687778bc284f2c2d0d498522adea222e 536 SUPERFAMILY SSF53098 176 479 2.65E-11 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_10845 0109019b4243d7c923774f4919f1f65d 430 Pfam PF11796 Protein of unknown function N-terminus (DUF3323) 36 246 7.4E-52 T 13-10-2018 IPR024466 Conserved hypothetical protein CHP02679, N terminus AP3564_10845 0109019b4243d7c923774f4919f1f65d 430 TIGRFAM TIGR02679 TIGR02679: TIGR02679 family protein 34 424 3.8E-88 T 13-10-2018 IPR013495 Conserved hypothetical protein CHP02679 AP3564_10845 0109019b4243d7c923774f4919f1f65d 430 SUPERFAMILY SSF56726 279 368 7.06E-6 T 13-10-2018 IPR036078 Spo11/DNA topoisomerase VI subunit A superfamily GO:0000737|GO:0003677|GO:0005694 Reactome: R-HSA-912446 AP3564_10845 0109019b4243d7c923774f4919f1f65d 430 Pfam PF09664 Protein of unknown function C-terminus (DUF2399) 269 424 4.5E-37 T 13-10-2018 IPR024465 Domain of unknown function DUF2399 AP3564_17750 06b56938144221cf7ced27d72345e1a4 1519 Pfam PF00310 Glutamine amidotransferases class-II 22 436 1.2E-187 T 13-10-2018 IPR017932 Glutamine amidotransferase type 2 domain AP3564_17750 06b56938144221cf7ced27d72345e1a4 1519 SUPERFAMILY SSF51395 444 1202 1.25E-266 T 13-10-2018 AP3564_17750 06b56938144221cf7ced27d72345e1a4 1519 Gene3D G3DSA:3.20.20.70 786 1217 1.6E-199 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_17750 06b56938144221cf7ced27d72345e1a4 1519 Gene3D G3DSA:2.160.20.60 1218 1488 2.7E-110 T 13-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 AP3564_17750 06b56938144221cf7ced27d72345e1a4 1519 Gene3D G3DSA:3.60.20.10 22 442 1.2E-183 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AP3564_17750 06b56938144221cf7ced27d72345e1a4 1519 SUPERFAMILY SSF56235 22 439 1.82E-156 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AP3564_17750 06b56938144221cf7ced27d72345e1a4 1519 SUPERFAMILY SSF69336 1213 1479 2.75E-93 T 13-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 AP3564_17750 06b56938144221cf7ced27d72345e1a4 1519 Gene3D G3DSA:3.20.20.70 443 785 2.9E-134 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_17750 06b56938144221cf7ced27d72345e1a4 1519 Pfam PF01645 Conserved region in glutamate synthase 798 1166 7.4E-162 T 13-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 AP3564_17750 06b56938144221cf7ced27d72345e1a4 1519 Pfam PF04898 Glutamate synthase central domain 462 738 2.1E-116 T 13-10-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 AP3564_17750 06b56938144221cf7ced27d72345e1a4 1519 Pfam PF01493 GXGXG motif 1244 1432 7.7E-84 T 13-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 AP3564_11965 6dc4643894aac37e52ddbc67ed38d6fe 63 ProDom PD054279 YKZF 9 61 2.0E-10 T 13-10-2018 AP3564_11965 6dc4643894aac37e52ddbc67ed38d6fe 63 Pfam PF14156 Antirepressor AbbA 3 61 8.8E-22 T 13-10-2018 IPR025446 Antirepressor AbbA AP3564_04830 5b0a8c9a264d6d12a866bfbc09886c04 628 Gene3D G3DSA:1.10.150.570 567 619 4.9E-25 T 13-10-2018 AP3564_04830 5b0a8c9a264d6d12a866bfbc09886c04 628 Pfam PF01134 Glucose inhibited division protein A 9 399 7.6E-175 T 13-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 AP3564_04830 5b0a8c9a264d6d12a866bfbc09886c04 628 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 368 391 - T 13-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 AP3564_04830 5b0a8c9a264d6d12a866bfbc09886c04 628 SMART SM01228 544 615 5.0E-44 T 13-10-2018 AP3564_04830 5b0a8c9a264d6d12a866bfbc09886c04 628 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 8 619 1.2E-297 T 13-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 AP3564_04830 5b0a8c9a264d6d12a866bfbc09886c04 628 Gene3D G3DSA:3.50.50.60 298 458 7.9E-57 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_04830 5b0a8c9a264d6d12a866bfbc09886c04 628 Gene3D G3DSA:3.50.50.60 1 224 3.5E-85 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_04830 5b0a8c9a264d6d12a866bfbc09886c04 628 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 273 287 - T 13-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 AP3564_04830 5b0a8c9a264d6d12a866bfbc09886c04 628 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 6 622 43.268 T 13-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 AP3564_04830 5b0a8c9a264d6d12a866bfbc09886c04 628 Gene3D G3DSA:1.10.10.1800 459 548 8.2E-26 T 13-10-2018 AP3564_04830 5b0a8c9a264d6d12a866bfbc09886c04 628 SUPERFAMILY SSF51905 7 261 6.04E-46 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_04830 5b0a8c9a264d6d12a866bfbc09886c04 628 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 139 148 1.7E-5 T 13-10-2018 AP3564_04830 5b0a8c9a264d6d12a866bfbc09886c04 628 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 9 31 1.7E-5 T 13-10-2018 AP3564_04830 5b0a8c9a264d6d12a866bfbc09886c04 628 Pfam PF13932 GidA associated domain 401 614 3.3E-81 T 13-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 AP3564_11420 1fce8b757dc5c7a3372ded3a2699e1fe 443 Gene3D G3DSA:3.90.350.10 254 345 2.4E-5 T 13-10-2018 IPR014736 Transposase, Tn5-like, core AP3564_11420 1fce8b757dc5c7a3372ded3a2699e1fe 443 Pfam PF01609 Transposase DDE domain 116 363 4.3E-34 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_11420 1fce8b757dc5c7a3372ded3a2699e1fe 443 SUPERFAMILY SSF53098 41 402 1.67E-38 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_06740 90042413859550e2513f4449b7995d13 356 SUPERFAMILY SSF56752 4 353 8.76E-121 T 13-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 AP3564_06740 90042413859550e2513f4449b7995d13 356 PIRSF PIRSF006468 2 356 1.1E-133 T 13-10-2018 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767|Reactome: R-HSA-70895 AP3564_06740 90042413859550e2513f4449b7995d13 356 Pfam PF01063 Amino-transferase class IV 69 312 3.0E-39 T 13-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 AP3564_06740 90042413859550e2513f4449b7995d13 356 ProSitePatterns PS00770 Aminotransferases class-IV signature. 233 262 - T 13-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 AP3564_06740 90042413859550e2513f4449b7995d13 356 Gene3D G3DSA:3.30.470.10 24 352 4.8E-139 T 13-10-2018 AP3564_06740 90042413859550e2513f4449b7995d13 356 Gene3D G3DSA:3.20.10.10 170 339 4.8E-139 T 13-10-2018 AP3564_06740 90042413859550e2513f4449b7995d13 356 TIGRFAM TIGR01123 ilvE_II: branched-chain amino acid aminotransferase 43 356 8.7E-128 T 13-10-2018 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767|Reactome: R-HSA-70895 AP3564_16545 b3a708bcb8382f2cba7f8227de3b3733 363 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 4 354 3.8E-146 T 13-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_16545 b3a708bcb8382f2cba7f8227de3b3733 363 SMART SM01097 1 131 5.4E-85 T 13-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_16545 b3a708bcb8382f2cba7f8227de3b3733 363 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 258 275 2.3E-38 T 13-10-2018 AP3564_16545 b3a708bcb8382f2cba7f8227de3b3733 363 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 172 186 2.3E-38 T 13-10-2018 AP3564_16545 b3a708bcb8382f2cba7f8227de3b3733 363 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 241 257 2.3E-38 T 13-10-2018 AP3564_16545 b3a708bcb8382f2cba7f8227de3b3733 363 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 283 294 2.3E-38 T 13-10-2018 AP3564_16545 b3a708bcb8382f2cba7f8227de3b3733 363 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 211 225 2.3E-38 T 13-10-2018 AP3564_16545 b3a708bcb8382f2cba7f8227de3b3733 363 Pfam PF00117 Glutamine amidotransferase class-I 174 350 3.8E-49 T 13-10-2018 IPR017926 Glutamine amidotransferase AP3564_16545 b3a708bcb8382f2cba7f8227de3b3733 363 SUPERFAMILY SSF52317 142 354 4.76E-61 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AP3564_16545 b3a708bcb8382f2cba7f8227de3b3733 363 PRINTS PR00097 Anthranilate synthase component II signature 214 223 7.2E-7 T 13-10-2018 AP3564_16545 b3a708bcb8382f2cba7f8227de3b3733 363 PRINTS PR00097 Anthranilate synthase component II signature 327 340 7.2E-7 T 13-10-2018 AP3564_16545 b3a708bcb8382f2cba7f8227de3b3733 363 PRINTS PR00097 Anthranilate synthase component II signature 241 252 7.2E-7 T 13-10-2018 AP3564_16545 b3a708bcb8382f2cba7f8227de3b3733 363 Gene3D G3DSA:3.50.30.20 1 148 2.0E-55 T 13-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_16545 b3a708bcb8382f2cba7f8227de3b3733 363 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 3 130 3.3E-50 T 13-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_16545 b3a708bcb8382f2cba7f8227de3b3733 363 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 1 356 49.031 T 13-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_16545 b3a708bcb8382f2cba7f8227de3b3733 363 SUPERFAMILY SSF52021 1 144 9.42E-57 T 13-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_16545 b3a708bcb8382f2cba7f8227de3b3733 363 PRINTS PR00096 Glutamine amidotransferase superfamily signature 327 340 5.1E-12 T 13-10-2018 AP3564_16545 b3a708bcb8382f2cba7f8227de3b3733 363 PRINTS PR00096 Glutamine amidotransferase superfamily signature 214 223 5.1E-12 T 13-10-2018 AP3564_16545 b3a708bcb8382f2cba7f8227de3b3733 363 PRINTS PR00096 Glutamine amidotransferase superfamily signature 241 252 5.1E-12 T 13-10-2018 AP3564_16545 b3a708bcb8382f2cba7f8227de3b3733 363 Gene3D G3DSA:3.40.50.880 162 361 1.4E-37 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AP3564_19080 c5d67c96ddee91f0daaadbb3ff1302c3 574 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 400 548 9.0E-53 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AP3564_19080 c5d67c96ddee91f0daaadbb3ff1302c3 574 SUPERFAMILY SSF52467 201 369 9.82E-65 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AP3564_19080 c5d67c96ddee91f0daaadbb3ff1302c3 574 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 19 183 4.2E-54 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AP3564_19080 c5d67c96ddee91f0daaadbb3ff1302c3 574 Gene3D G3DSA:3.40.50.970 370 574 6.2E-73 T 13-10-2018 AP3564_19080 c5d67c96ddee91f0daaadbb3ff1302c3 574 Gene3D G3DSA:3.40.50.970 11 193 1.4E-69 T 13-10-2018 AP3564_19080 c5d67c96ddee91f0daaadbb3ff1302c3 574 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 19 572 3.7E-271 T 13-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 AP3564_19080 c5d67c96ddee91f0daaadbb3ff1302c3 574 SUPERFAMILY SSF52518 14 195 1.18E-61 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold AP3564_19080 c5d67c96ddee91f0daaadbb3ff1302c3 574 SUPERFAMILY SSF52518 377 572 3.75E-72 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold AP3564_19080 c5d67c96ddee91f0daaadbb3ff1302c3 574 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 208 343 5.6E-48 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AP3564_19080 c5d67c96ddee91f0daaadbb3ff1302c3 574 Gene3D G3DSA:3.40.50.1220 203 367 5.5E-63 T 13-10-2018 AP3564_00640 a75b60ec5b373aa20474408692c6451c 395 Pfam PF13458 Periplasmic binding protein 39 390 1.5E-57 T 13-10-2018 IPR028081 Leucine-binding protein domain AP3564_00640 a75b60ec5b373aa20474408692c6451c 395 Gene3D G3DSA:3.40.50.2300 40 379 1.7E-109 T 13-10-2018 AP3564_00640 a75b60ec5b373aa20474408692c6451c 395 Gene3D G3DSA:3.40.50.2300 161 390 1.7E-109 T 13-10-2018 AP3564_00640 a75b60ec5b373aa20474408692c6451c 395 SUPERFAMILY SSF53822 37 393 6.73E-81 T 13-10-2018 IPR028082 Periplasmic binding protein-like I AP3564_00640 a75b60ec5b373aa20474408692c6451c 395 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 39 55 1.2E-5 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AP3564_00640 a75b60ec5b373aa20474408692c6451c 395 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 270 288 1.2E-5 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AP3564_00640 a75b60ec5b373aa20474408692c6451c 395 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 61 77 1.2E-5 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AP3564_00640 a75b60ec5b373aa20474408692c6451c 395 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 80 98 1.2E-5 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AP3564_12740 f01e1a0d673c2585bf7bf34a03360ff8 94 Hamap MF_01560 UPF0358 protein . 4 94 27.793 T 13-10-2018 IPR009983 Uncharacterised protein family UPF0358 AP3564_12740 f01e1a0d673c2585bf7bf34a03360ff8 94 SUPERFAMILY SSF140404 7 85 2.09E-37 T 13-10-2018 IPR036270 UPF0358 superfamily AP3564_12740 f01e1a0d673c2585bf7bf34a03360ff8 94 Gene3D G3DSA:1.10.287.750 6 93 6.0E-38 T 13-10-2018 IPR036270 UPF0358 superfamily AP3564_12740 f01e1a0d673c2585bf7bf34a03360ff8 94 Pfam PF07408 Protein of unknown function (DUF1507) 10 91 1.5E-42 T 13-10-2018 IPR009983 Uncharacterised protein family UPF0358 AP3564_13795 c98d39274111443cf26c87adf2b025c3 615 SUPERFAMILY SSF52402 229 578 4.49E-77 T 13-10-2018 AP3564_13795 c98d39274111443cf26c87adf2b025c3 615 Pfam PF00733 Asparagine synthase 242 579 2.6E-97 T 13-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 AP3564_13795 c98d39274111443cf26c87adf2b025c3 615 Pfam PF13537 Glutamine amidotransferase domain 48 169 2.7E-46 T 13-10-2018 IPR017932 Glutamine amidotransferase type 2 domain AP3564_13795 c98d39274111443cf26c87adf2b025c3 615 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 534 9.1E-170 T 13-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 AP3564_13795 c98d39274111443cf26c87adf2b025c3 615 Gene3D G3DSA:3.60.20.10 2 184 2.1E-61 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AP3564_13795 c98d39274111443cf26c87adf2b025c3 615 PIRSF PIRSF001589 1 614 1.6E-144 T 13-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 AP3564_13795 c98d39274111443cf26c87adf2b025c3 615 SUPERFAMILY SSF56235 1 226 1.8E-64 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AP3564_17495 1905e31f2cf6e1c953ed58793a774188 491 Pfam PF03323 Bacillus/Clostridium GerA spore germination protein 29 480 5.0E-155 T 13-10-2018 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 AP3564_17495 1905e31f2cf6e1c953ed58793a774188 491 PIRSF PIRSF005690 7 491 3.6E-138 T 13-10-2018 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 AP3564_15890 c80d0c1a8942abbf5cc4b936d8028335 425 Gene3D G3DSA:3.30.830.10 239 423 8.2E-46 T 13-10-2018 AP3564_15890 c80d0c1a8942abbf5cc4b936d8028335 425 Pfam PF05193 Peptidase M16 inactive domain 185 357 1.1E-29 T 13-10-2018 IPR007863 Peptidase M16, C-terminal AP3564_15890 c80d0c1a8942abbf5cc4b936d8028335 425 Gene3D G3DSA:3.30.830.10 5 235 5.2E-64 T 13-10-2018 AP3564_15890 c80d0c1a8942abbf5cc4b936d8028335 425 SUPERFAMILY SSF63411 248 413 6.06E-33 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AP3564_15890 c80d0c1a8942abbf5cc4b936d8028335 425 SUPERFAMILY SSF63411 12 230 2.2E-26 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AP3564_02940 8d9df0ffc7082f248c77fd44e1eca7f2 403 SUPERFAMILY SSF53822 40 389 7.31E-95 T 13-10-2018 IPR028082 Periplasmic binding protein-like I AP3564_02940 8d9df0ffc7082f248c77fd44e1eca7f2 403 Pfam PF13458 Periplasmic binding protein 40 375 2.5E-83 T 13-10-2018 IPR028081 Leucine-binding protein domain AP3564_02940 8d9df0ffc7082f248c77fd44e1eca7f2 403 Gene3D G3DSA:3.40.50.2300 158 380 9.6E-112 T 13-10-2018 AP3564_02940 8d9df0ffc7082f248c77fd44e1eca7f2 403 Gene3D G3DSA:3.40.50.2300 41 369 9.6E-112 T 13-10-2018 AP3564_18310 ac9b42a5c5240038ed39ebeafeb12717 375 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 138 363 7.8E-40 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AP3564_18310 ac9b42a5c5240038ed39ebeafeb12717 375 SUPERFAMILY SSF88659 272 373 5.79E-30 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AP3564_18310 ac9b42a5c5240038ed39ebeafeb12717 375 Pfam PF04539 Sigma-70 region 3 221 297 5.0E-33 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 AP3564_18310 ac9b42a5c5240038ed39ebeafeb12717 375 Pfam PF00140 Sigma-70 factor, region 1.2 104 137 6.6E-19 T 13-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AP3564_18310 ac9b42a5c5240038ed39ebeafeb12717 375 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 335 361 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_18310 ac9b42a5c5240038ed39ebeafeb12717 375 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 2 375 34.814 T 13-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 AP3564_18310 ac9b42a5c5240038ed39ebeafeb12717 375 Gene3D G3DSA:1.10.220.120 17 76 1.1E-11 T 13-10-2018 AP3564_18310 ac9b42a5c5240038ed39ebeafeb12717 375 SUPERFAMILY SSF88946 103 212 3.14E-55 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AP3564_18310 ac9b42a5c5240038ed39ebeafeb12717 375 SUPERFAMILY SSF88659 215 288 1.29E-23 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AP3564_18310 ac9b42a5c5240038ed39ebeafeb12717 375 Gene3D G3DSA:1.10.601.10 102 136 3.7E-12 T 13-10-2018 AP3564_18310 ac9b42a5c5240038ed39ebeafeb12717 375 Gene3D G3DSA:1.10.601.10 137 214 1.1E-51 T 13-10-2018 AP3564_18310 ac9b42a5c5240038ed39ebeafeb12717 375 PRINTS PR00046 Major sigma-70 factor signature 314 326 2.9E-32 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_18310 ac9b42a5c5240038ed39ebeafeb12717 375 PRINTS PR00046 Major sigma-70 factor signature 190 198 2.9E-32 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_18310 ac9b42a5c5240038ed39ebeafeb12717 375 PRINTS PR00046 Major sigma-70 factor signature 335 350 2.9E-32 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_18310 ac9b42a5c5240038ed39ebeafeb12717 375 PRINTS PR00046 Major sigma-70 factor signature 166 179 2.9E-32 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_18310 ac9b42a5c5240038ed39ebeafeb12717 375 PRINTS PR00046 Major sigma-70 factor signature 350 361 2.9E-32 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_18310 ac9b42a5c5240038ed39ebeafeb12717 375 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 166 179 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_18310 ac9b42a5c5240038ed39ebeafeb12717 375 Gene3D G3DSA:1.10.10.10 303 375 2.8E-36 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_18310 ac9b42a5c5240038ed39ebeafeb12717 375 Pfam PF04542 Sigma-70 region 2 142 211 3.3E-22 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AP3564_18310 ac9b42a5c5240038ed39ebeafeb12717 375 Pfam PF04545 Sigma-70, region 4 310 363 5.2E-20 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 AP3564_18310 ac9b42a5c5240038ed39ebeafeb12717 375 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 138 374 6.4E-126 T 13-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 AP3564_18310 ac9b42a5c5240038ed39ebeafeb12717 375 Pfam PF03979 Sigma-70 factor, region 1.1 19 87 1.9E-17 T 13-10-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 AP3564_18310 ac9b42a5c5240038ed39ebeafeb12717 375 Gene3D G3DSA:1.10.10.10 215 290 3.9E-36 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_13330 3a008484f5cdec3b575e40769ac99df1 67 SUPERFAMILY SSF55008 2 66 1.7E-22 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 AP3564_13330 3a008484f5cdec3b575e40769ac99df1 67 ProSitePatterns PS01047 Heavy-metal-associated domain. 7 36 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AP3564_13330 3a008484f5cdec3b575e40769ac99df1 67 PRINTS PR00946 Mercury scavenger protein signature 10 26 2.6E-9 T 13-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 AP3564_13330 3a008484f5cdec3b575e40769ac99df1 67 PRINTS PR00946 Mercury scavenger protein signature 55 67 2.6E-9 T 13-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 AP3564_13330 3a008484f5cdec3b575e40769ac99df1 67 PRINTS PR00946 Mercury scavenger protein signature 41 55 2.6E-9 T 13-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 AP3564_13330 3a008484f5cdec3b575e40769ac99df1 67 PRINTS PR00946 Mercury scavenger protein signature 26 41 2.6E-9 T 13-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 AP3564_13330 3a008484f5cdec3b575e40769ac99df1 67 Pfam PF00403 Heavy-metal-associated domain 4 65 9.1E-20 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AP3564_13330 3a008484f5cdec3b575e40769ac99df1 67 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 4 66 3.1E-24 T 13-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 AP3564_13330 3a008484f5cdec3b575e40769ac99df1 67 Gene3D G3DSA:3.30.70.100 1 67 9.5E-27 T 13-10-2018 AP3564_16095 8a74a9906c37e4e23ad16eb9bf4d6fe5 686 SUPERFAMILY SSF47226 3 125 3.14E-32 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 AP3564_16095 8a74a9906c37e4e23ad16eb9bf4d6fe5 686 SMART SM00387 412 555 1.4E-24 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_16095 8a74a9906c37e4e23ad16eb9bf4d6fe5 686 SUPERFAMILY SSF55052 166 249 2.38E-24 T 13-10-2018 IPR035891 CheY-binding domain of CheA AP3564_16095 8a74a9906c37e4e23ad16eb9bf4d6fe5 686 Pfam PF07194 P2 response regulator binding domain 169 248 2.3E-26 T 13-10-2018 IPR010808 Chemotaxis protein CheA, P2 response regulator-binding GO:0000155|GO:0000160|GO:0004673|GO:0006928 AP3564_16095 8a74a9906c37e4e23ad16eb9bf4d6fe5 686 Gene3D G3DSA:1.20.120.160 1 143 5.8E-40 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 AP3564_16095 8a74a9906c37e4e23ad16eb9bf4d6fe5 686 Gene3D G3DSA:2.40.50.180 578 640 2.3E-40 T 13-10-2018 AP3564_16095 8a74a9906c37e4e23ad16eb9bf4d6fe5 686 Gene3D G3DSA:2.30.30.40 555 680 2.3E-40 T 13-10-2018 AP3564_16095 8a74a9906c37e4e23ad16eb9bf4d6fe5 686 Pfam PF01627 Hpt domain 5 97 5.8E-21 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AP3564_16095 8a74a9906c37e4e23ad16eb9bf4d6fe5 686 SUPERFAMILY SSF50341 554 685 1.12E-33 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 AP3564_16095 8a74a9906c37e4e23ad16eb9bf4d6fe5 686 PRINTS PR00344 Bacterial sensor protein C-terminal signature 515 533 8.4E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_16095 8a74a9906c37e4e23ad16eb9bf4d6fe5 686 PRINTS PR00344 Bacterial sensor protein C-terminal signature 457 471 8.4E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_16095 8a74a9906c37e4e23ad16eb9bf4d6fe5 686 PRINTS PR00344 Bacterial sensor protein C-terminal signature 539 552 8.4E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_16095 8a74a9906c37e4e23ad16eb9bf4d6fe5 686 SMART SM00260 547 685 4.3E-42 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AP3564_16095 8a74a9906c37e4e23ad16eb9bf4d6fe5 686 Gene3D G3DSA:1.10.287.560 307 367 2.8E-19 T 13-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 AP3564_16095 8a74a9906c37e4e23ad16eb9bf4d6fe5 686 Pfam PF01584 CheW-like domain 560 685 2.3E-27 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AP3564_16095 8a74a9906c37e4e23ad16eb9bf4d6fe5 686 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 308 366 5.9E-13 T 13-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 AP3564_16095 8a74a9906c37e4e23ad16eb9bf4d6fe5 686 SUPERFAMILY SSF55874 369 553 2.1E-43 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_16095 8a74a9906c37e4e23ad16eb9bf4d6fe5 686 SUPERFAMILY SSF47384 308 368 2.94E-14 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AP3564_16095 8a74a9906c37e4e23ad16eb9bf4d6fe5 686 Gene3D G3DSA:3.30.565.10 368 554 5.7E-62 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_16095 8a74a9906c37e4e23ad16eb9bf4d6fe5 686 SMART SM01231 307 367 1.4E-17 T 13-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 AP3564_16095 8a74a9906c37e4e23ad16eb9bf4d6fe5 686 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 415 554 3.1E-18 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_16095 8a74a9906c37e4e23ad16eb9bf4d6fe5 686 Gene3D G3DSA:3.30.70.1110 166 250 6.1E-30 T 13-10-2018 IPR037052 Chemotaxis protein CheA, P2 response regulator-binding domain superfamily AP3564_16095 8a74a9906c37e4e23ad16eb9bf4d6fe5 686 SMART SM00073 3 100 2.6E-38 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AP3564_08115 24b59343b5f47586dc11600aeddda383 595 Pfam PF07881 L-fucose isomerase, first N-terminal domain 12 179 4.2E-84 T 13-10-2018 IPR012888 L-fucose isomerase, N-terminal-1 GO:0005737|GO:0006004|GO:0008736 KEGG: 00051+5.3.1.25 AP3564_08115 24b59343b5f47586dc11600aeddda383 595 Gene3D G3DSA:3.40.275.10 181 345 1.1E-83 T 13-10-2018 IPR038392 L-fucose isomerase, domain 2 superfamily KEGG: 00051+5.3.1.25 AP3564_08115 24b59343b5f47586dc11600aeddda383 595 SUPERFAMILY SSF53743 10 360 2.22E-148 T 13-10-2018 IPR009015 L-fucose isomerase, N-terminal/central domain superfamily GO:0005737|GO:0005996|GO:0016861 AP3564_08115 24b59343b5f47586dc11600aeddda383 595 Gene3D G3DSA:3.40.50.1070 1 180 5.0E-97 T 13-10-2018 IPR038391 L-fucose isomerase, domain 1 superfamily KEGG: 00051+5.3.1.25 AP3564_08115 24b59343b5f47586dc11600aeddda383 595 TIGRFAM TIGR01089 fucI: L-fucose isomerase 11 595 0.0 T 13-10-2018 IPR005763 L-fucose isomerase GO:0005737|GO:0008736|GO:0019317|GO:0030145 KEGG: 00051+5.3.1.25 AP3564_08115 24b59343b5f47586dc11600aeddda383 595 Pfam PF07882 L-fucose isomerase, second N-terminal domain 180 359 2.2E-95 T 13-10-2018 IPR012889 L-fucose isomerase, N-terminal-2 GO:0005737|GO:0006004|GO:0008736 KEGG: 00051+5.3.1.25 AP3564_08115 24b59343b5f47586dc11600aeddda383 595 Hamap MF_01254 L-fucose isomerase [fucI]. 8 595 68.926 T 13-10-2018 IPR005763 L-fucose isomerase GO:0005737|GO:0008736|GO:0019317|GO:0030145 KEGG: 00051+5.3.1.25 AP3564_08115 24b59343b5f47586dc11600aeddda383 595 SUPERFAMILY SSF50443 361 595 4.97E-126 T 13-10-2018 IPR004216 L-fucose/L-arabinose isomerase, C-terminal AP3564_08115 24b59343b5f47586dc11600aeddda383 595 Gene3D G3DSA:3.20.14.10 346 595 2.4E-134 T 13-10-2018 IPR038393 L-fucose isomerase, domain 3 superfamily KEGG: 00051+5.3.1.25 AP3564_08115 24b59343b5f47586dc11600aeddda383 595 Pfam PF02952 L-fucose isomerase, C-terminal domain 395 558 1.2E-54 T 13-10-2018 IPR015888 L-fucose isomerase, C-terminal GO:0005737|GO:0006004|GO:0008736 KEGG: 00051+5.3.1.25 AP3564_18575 62613d9596d042e8e3b1b304f0f4ce53 171 Pfam PF08282 haloacid dehalogenase-like hydrolase 30 86 3.7E-5 T 13-10-2018 AP3564_18575 62613d9596d042e8e3b1b304f0f4ce53 171 TIGRFAM TIGR01668 YqeG_hyp_ppase: HAD phosphatase, family IIIA 4 165 1.2E-57 T 13-10-2018 IPR010021 HAD-superfamily phosphatase, YqeG-like AP3564_18575 62613d9596d042e8e3b1b304f0f4ce53 171 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 55 136 8.8E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AP3564_18575 62613d9596d042e8e3b1b304f0f4ce53 171 Gene3D G3DSA:3.40.50.1000 22 153 9.5E-24 T 13-10-2018 IPR023214 HAD superfamily AP3564_18575 62613d9596d042e8e3b1b304f0f4ce53 171 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 28 138 4.3E-23 T 13-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 AP3564_18575 62613d9596d042e8e3b1b304f0f4ce53 171 SUPERFAMILY SSF56784 15 150 1.18E-26 T 13-10-2018 IPR036412 HAD-like superfamily AP3564_18575 62613d9596d042e8e3b1b304f0f4ce53 171 Pfam PF13242 HAD-hyrolase-like 90 136 2.8E-11 T 13-10-2018 AP3564_18575 62613d9596d042e8e3b1b304f0f4ce53 171 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 57 128 3.6E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AP3564_19025 e8b25b2c50ec19459eabff7c7e9e631f 552 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 97 116 1.5E-33 T 13-10-2018 AP3564_19025 e8b25b2c50ec19459eabff7c7e9e631f 552 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 492 510 1.5E-33 T 13-10-2018 AP3564_19025 e8b25b2c50ec19459eabff7c7e9e631f 552 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 352 368 1.5E-33 T 13-10-2018 AP3564_19025 e8b25b2c50ec19459eabff7c7e9e631f 552 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 439 458 1.5E-33 T 13-10-2018 AP3564_19025 e8b25b2c50ec19459eabff7c7e9e631f 552 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 469 488 1.5E-33 T 13-10-2018 AP3564_19025 e8b25b2c50ec19459eabff7c7e9e631f 552 TIGRFAM TIGR02902 spore_lonB: ATP-dependent protease LonB 5 533 8.5E-284 T 13-10-2018 IPR014251 Sporulation protease LonB AP3564_19025 e8b25b2c50ec19459eabff7c7e9e631f 552 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 93 265 4.9E-19 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AP3564_19025 e8b25b2c50ec19459eabff7c7e9e631f 552 Gene3D G3DSA:3.30.230.10 342 548 1.2E-51 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AP3564_19025 e8b25b2c50ec19459eabff7c7e9e631f 552 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 442 450 - T 13-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 AP3564_19025 e8b25b2c50ec19459eabff7c7e9e631f 552 Gene3D G3DSA:3.40.50.300 52 263 1.8E-34 T 13-10-2018 AP3564_19025 e8b25b2c50ec19459eabff7c7e9e631f 552 SMART SM00382 89 267 1.9E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_19025 e8b25b2c50ec19459eabff7c7e9e631f 552 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 344 534 7.9E-35 T 13-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 AP3564_19025 e8b25b2c50ec19459eabff7c7e9e631f 552 SUPERFAMILY SSF54211 350 532 6.07E-42 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AP3564_19025 e8b25b2c50ec19459eabff7c7e9e631f 552 SUPERFAMILY SSF52540 56 328 5.03E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_10125 b8d994fadd094823cdb715053b66959f 330 Gene3D G3DSA:3.40.50.620 4 323 3.6E-142 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AP3564_10125 b8d994fadd094823cdb715053b66959f 330 Pfam PF00579 tRNA synthetases class I (W and Y) 3 280 7.2E-87 T 13-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_10125 b8d994fadd094823cdb715053b66959f 330 SUPERFAMILY SSF52374 2 324 1.59E-100 T 13-10-2018 AP3564_10125 b8d994fadd094823cdb715053b66959f 330 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 1 325 43.137 T 13-10-2018 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 AP3564_10125 b8d994fadd094823cdb715053b66959f 330 Gene3D G3DSA:1.10.240.10 183 293 3.6E-142 T 13-10-2018 AP3564_10125 b8d994fadd094823cdb715053b66959f 330 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 10 19 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_10125 b8d994fadd094823cdb715053b66959f 330 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 2 324 2.3E-124 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AP3564_10125 b8d994fadd094823cdb715053b66959f 330 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 64 83 9.1E-30 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AP3564_10125 b8d994fadd094823cdb715053b66959f 330 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 139 160 9.1E-30 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AP3564_10125 b8d994fadd094823cdb715053b66959f 330 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 192 202 9.1E-30 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AP3564_10125 b8d994fadd094823cdb715053b66959f 330 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 14 30 9.1E-30 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AP3564_17840 1ea24df1d89dfe78da5d449d8ada8351 79 Gene3D G3DSA:1.10.287.1040 2 79 1.9E-23 T 13-10-2018 IPR037004 Exonuclease VII, small subunit superfamily GO:0006308|GO:0008855|GO:0009318 AP3564_17840 1ea24df1d89dfe78da5d449d8ada8351 79 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 5 49 1.0E-12 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AP3564_17840 1ea24df1d89dfe78da5d449d8ada8351 79 Pfam PF02609 Exonuclease VII small subunit 9 58 7.9E-22 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AP3564_17840 1ea24df1d89dfe78da5d449d8ada8351 79 PIRSF PIRSF006488 1 79 5.6E-20 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AP3564_17840 1ea24df1d89dfe78da5d449d8ada8351 79 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 8 64 6.4E-24 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AP3564_17840 1ea24df1d89dfe78da5d449d8ada8351 79 SUPERFAMILY SSF116842 2 67 5.1E-22 T 13-10-2018 AP3564_17840 1ea24df1d89dfe78da5d449d8ada8351 79 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 8 68 15.16 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AP3564_01390 2974f56aec6ad56f04d5463028007737 266 Gene3D G3DSA:3.40.50.10090 13 257 3.1E-77 T 13-10-2018 AP3564_01390 2974f56aec6ad56f04d5463028007737 266 Pfam PF02602 Uroporphyrinogen-III synthase HemD 19 258 1.8E-40 T 13-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AP3564_01390 2974f56aec6ad56f04d5463028007737 266 Gene3D G3DSA:3.40.50.10090 37 173 3.1E-77 T 13-10-2018 AP3564_01390 2974f56aec6ad56f04d5463028007737 266 SUPERFAMILY SSF69618 6 265 2.35E-52 T 13-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AP3564_08955 1b06331456a4fdbb85840e74e15f6c35 261 Gene3D G3DSA:3.40.50.300 4 252 1.9E-55 T 13-10-2018 AP3564_08955 1b06331456a4fdbb85840e74e15f6c35 261 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_08955 1b06331456a4fdbb85840e74e15f6c35 261 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 6 246 2.8E-115 T 13-10-2018 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524 AP3564_08955 1b06331456a4fdbb85840e74e15f6c35 261 Pfam PF00005 ABC transporter 21 173 1.8E-22 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_08955 1b06331456a4fdbb85840e74e15f6c35 261 SMART SM00382 30 225 2.6E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_08955 1b06331456a4fdbb85840e74e15f6c35 261 SUPERFAMILY SSF52540 6 232 1.43E-43 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_19665 a2f6025a831f9a6ddc347d74ac17cfec 96 SUPERFAMILY SSF46689 4 94 3.58E-21 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_19665 a2f6025a831f9a6ddc347d74ac17cfec 96 Gene3D G3DSA:1.10.10.60 9 94 2.2E-13 T 13-10-2018 AP3564_19665 a2f6025a831f9a6ddc347d74ac17cfec 96 Pfam PF01527 Transposase 3 74 8.8E-13 T 13-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AP3564_03500 a2f6025a831f9a6ddc347d74ac17cfec 96 SUPERFAMILY SSF46689 4 94 3.58E-21 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_03500 a2f6025a831f9a6ddc347d74ac17cfec 96 Gene3D G3DSA:1.10.10.60 9 94 2.2E-13 T 13-10-2018 AP3564_03500 a2f6025a831f9a6ddc347d74ac17cfec 96 Pfam PF01527 Transposase 3 74 8.8E-13 T 13-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AP3564_11635 19a9fe231a4ebbae7acba166bab7c870 333 Pfam PF01757 Acyltransferase family 6 306 2.3E-18 T 13-10-2018 IPR002656 Acyltransferase 3 GO:0016747 AP3564_18800 53c357504b89008c5b63e1a2a4d8a094 222 Pfam PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) 15 210 4.5E-28 T 13-10-2018 IPR019076 Sporulation lipoprotein YhcN/YlaJ-like AP3564_11005 ddab080ff3bfe7df6d23cfda7c3027c5 573 ProSitePatterns PS00211 ABC transporters family signature. 468 482 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_11005 ddab080ff3bfe7df6d23cfda7c3027c5 573 Pfam PF00664 ABC transporter transmembrane region 19 284 4.1E-21 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AP3564_11005 ddab080ff3bfe7df6d23cfda7c3027c5 573 SMART SM00382 362 542 3.8E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_11005 ddab080ff3bfe7df6d23cfda7c3027c5 573 Pfam PF00005 ABC transporter 353 496 5.6E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_11005 ddab080ff3bfe7df6d23cfda7c3027c5 573 SUPERFAMILY SSF52540 336 564 2.6E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_11005 ddab080ff3bfe7df6d23cfda7c3027c5 573 SUPERFAMILY SSF90123 10 312 4.05E-48 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AP3564_11005 ddab080ff3bfe7df6d23cfda7c3027c5 573 TIGRFAM TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit 7 526 9.1E-123 T 13-10-2018 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC GO:0016021|GO:0034775|GO:0042626|GO:0045454 AP3564_11005 ddab080ff3bfe7df6d23cfda7c3027c5 573 Gene3D G3DSA:3.40.50.300 332 571 2.7E-70 T 13-10-2018 AP3564_11005 ddab080ff3bfe7df6d23cfda7c3027c5 573 Gene3D G3DSA:1.20.1560.10 7 316 4.7E-39 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AP3564_14915 a1336d4e7730086775630294c932e468 585 Pfam PF17200 Single Cache domain 2 43 202 2.0E-44 T 13-10-2018 IPR033480 Single Cache domain 2 AP3564_14915 a1336d4e7730086775630294c932e468 585 Pfam PF00672 HAMP domain 228 276 4.6E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AP3564_14915 a1336d4e7730086775630294c932e468 585 SMART SM01049 40 144 1.3E-15 T 13-10-2018 IPR033480 Single Cache domain 2 AP3564_14915 a1336d4e7730086775630294c932e468 585 SMART SM00304 227 280 2.0E-5 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AP3564_14915 a1336d4e7730086775630294c932e468 585 Gene3D G3DSA:3.30.450.20 39 199 6.0E-30 T 13-10-2018 AP3564_14915 a1336d4e7730086775630294c932e468 585 Gene3D G3DSA:1.20.1480.50 200 286 1.2E-11 T 13-10-2018 AP3564_14915 a1336d4e7730086775630294c932e468 585 SUPERFAMILY SSF58104 252 584 1.96E-73 T 13-10-2018 AP3564_14915 a1336d4e7730086775630294c932e468 585 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 357 537 1.3E-44 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AP3564_14915 a1336d4e7730086775630294c932e468 585 Gene3D G3DSA:1.10.287.950 288 584 7.0E-72 T 13-10-2018 AP3564_14915 a1336d4e7730086775630294c932e468 585 SMART SM00283 309 584 4.2E-86 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AP3564_11530 ee8e69e76aea96a485039926f7b56a56 153 SUPERFAMILY SSF46785 8 147 2.33E-34 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_11530 ee8e69e76aea96a485039926f7b56a56 153 ProSitePatterns PS01117 MarR-type HTH domain signature. 72 106 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site AP3564_11530 ee8e69e76aea96a485039926f7b56a56 153 SMART SM00347 33 133 5.2E-35 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_11530 ee8e69e76aea96a485039926f7b56a56 153 Pfam PF01047 MarR family 40 98 1.5E-19 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_11530 ee8e69e76aea96a485039926f7b56a56 153 Gene3D G3DSA:1.10.10.10 4 150 3.2E-35 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_13940 40f1942e339e9c8e4dc07f95feb500dc 419 SUPERFAMILY SSF54106 2 45 6.8E-11 T 13-10-2018 AP3564_13940 40f1942e339e9c8e4dc07f95feb500dc 419 SUPERFAMILY SSF51445 125 405 1.41E-44 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily AP3564_13940 40f1942e339e9c8e4dc07f95feb500dc 419 Gene3D G3DSA:3.20.20.80 126 406 1.4E-90 T 13-10-2018 AP3564_13940 40f1942e339e9c8e4dc07f95feb500dc 419 Pfam PF00704 Glycosyl hydrolases family 18 178 400 2.0E-28 T 13-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 AP3564_13940 40f1942e339e9c8e4dc07f95feb500dc 419 SMART SM00257 2 45 4.7E-12 T 13-10-2018 IPR018392 LysM domain AP3564_13940 40f1942e339e9c8e4dc07f95feb500dc 419 SMART SM00257 48 92 1.4E-10 T 13-10-2018 IPR018392 LysM domain AP3564_13940 40f1942e339e9c8e4dc07f95feb500dc 419 Gene3D G3DSA:3.10.350.10 1 46 5.5E-15 T 13-10-2018 IPR036779 LysM domain superfamily AP3564_13940 40f1942e339e9c8e4dc07f95feb500dc 419 Pfam PF01476 LysM domain 49 92 7.2E-11 T 13-10-2018 IPR018392 LysM domain AP3564_13940 40f1942e339e9c8e4dc07f95feb500dc 419 Pfam PF01476 LysM domain 3 45 3.4E-11 T 13-10-2018 IPR018392 LysM domain AP3564_13940 40f1942e339e9c8e4dc07f95feb500dc 419 Gene3D G3DSA:3.10.50.10 315 373 1.4E-90 T 13-10-2018 IPR029070 Chitinase insertion domain superfamily AP3564_13940 40f1942e339e9c8e4dc07f95feb500dc 419 SMART SM00636 99 402 2.3E-24 T 13-10-2018 IPR011583 Chitinase II GO:0008061 AP3564_13940 40f1942e339e9c8e4dc07f95feb500dc 419 Gene3D G3DSA:3.10.350.10 47 101 4.3E-13 T 13-10-2018 IPR036779 LysM domain superfamily AP3564_13940 40f1942e339e9c8e4dc07f95feb500dc 419 SUPERFAMILY SSF54106 47 92 1.7E-9 T 13-10-2018 AP3564_13980 d66228cdee42be6969c3ca5e43599ace 160 SUPERFAMILY SSF75169 6 158 2.21E-25 T 13-10-2018 IPR027396 DsrEFH-like AP3564_13980 d66228cdee42be6969c3ca5e43599ace 160 Pfam PF13686 DsrE/DsrF/DrsH-like family 5 159 1.5E-67 T 13-10-2018 IPR032836 DsrE2-like family AP3564_13980 d66228cdee42be6969c3ca5e43599ace 160 Gene3D G3DSA:3.40.1260.10 2 160 2.3E-66 T 13-10-2018 IPR027396 DsrEFH-like AP3564_08945 523bad5c9baa6b2e6cba52b6baa34999 281 PIRSF PIRSF002854 1 281 1.7E-106 T 13-10-2018 IPR004872 Lipoprotein NlpA family AP3564_08945 523bad5c9baa6b2e6cba52b6baa34999 281 Pfam PF03180 NLPA lipoprotein 41 280 8.9E-94 T 13-10-2018 IPR004872 Lipoprotein NlpA family AP3564_08945 523bad5c9baa6b2e6cba52b6baa34999 281 Gene3D G3DSA:3.40.190.10 122 230 1.3E-103 T 13-10-2018 AP3564_08945 523bad5c9baa6b2e6cba52b6baa34999 281 Gene3D G3DSA:3.40.190.10 42 278 1.3E-103 T 13-10-2018 AP3564_08945 523bad5c9baa6b2e6cba52b6baa34999 281 SUPERFAMILY SSF53850 41 280 4.76E-83 T 13-10-2018 AP3564_19530 ab2e23a03039c8aaee42ccb11c3e8739 299 PIRSF PIRSF000097 130 297 3.1E-26 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AP3564_19530 ab2e23a03039c8aaee42ccb11c3e8739 299 PIRSF PIRSF000097 14 134 6.8E-24 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AP3564_19530 ab2e23a03039c8aaee42ccb11c3e8739 299 Gene3D G3DSA:3.20.20.100 17 299 6.3E-103 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AP3564_19530 ab2e23a03039c8aaee42ccb11c3e8739 299 PRINTS PR00069 Aldo-keto reductase signature 142 159 1.9E-22 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AP3564_19530 ab2e23a03039c8aaee42ccb11c3e8739 299 PRINTS PR00069 Aldo-keto reductase signature 56 80 1.9E-22 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AP3564_19530 ab2e23a03039c8aaee42ccb11c3e8739 299 PRINTS PR00069 Aldo-keto reductase signature 112 130 1.9E-22 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AP3564_19530 ab2e23a03039c8aaee42ccb11c3e8739 299 PRINTS PR00069 Aldo-keto reductase signature 221 245 1.9E-22 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AP3564_19530 ab2e23a03039c8aaee42ccb11c3e8739 299 Pfam PF00248 Aldo/keto reductase family 32 286 2.5E-56 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain AP3564_19530 ab2e23a03039c8aaee42ccb11c3e8739 299 SUPERFAMILY SSF51430 19 291 2.23E-83 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AP3564_04630 3e54c719d405eb65d4b2bf3264f4a47f 254 Pfam PF08220 DeoR-like helix-turn-helix domain 6 61 2.7E-17 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AP3564_04630 3e54c719d405eb65d4b2bf3264f4a47f 254 Pfam PF00455 DeoR C terminal sensor domain 74 231 2.7E-53 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain AP3564_04630 3e54c719d405eb65d4b2bf3264f4a47f 254 Gene3D G3DSA:1.10.10.10 1 58 1.6E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_04630 3e54c719d405eb65d4b2bf3264f4a47f 254 SMART SM00420 6 58 2.3E-17 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AP3564_04630 3e54c719d405eb65d4b2bf3264f4a47f 254 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 6.6E-10 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AP3564_04630 3e54c719d405eb65d4b2bf3264f4a47f 254 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 6.6E-10 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AP3564_04630 3e54c719d405eb65d4b2bf3264f4a47f 254 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AP3564_04630 3e54c719d405eb65d4b2bf3264f4a47f 254 SUPERFAMILY SSF46785 4 64 8.1E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_04630 3e54c719d405eb65d4b2bf3264f4a47f 254 SUPERFAMILY SSF100950 73 231 7.91E-34 T 13-10-2018 IPR037171 NagB/RpiA transferase-like AP3564_04630 3e54c719d405eb65d4b2bf3264f4a47f 254 Gene3D G3DSA:3.30.750.70 71 134 5.8E-6 T 13-10-2018 AP3564_04630 3e54c719d405eb65d4b2bf3264f4a47f 254 SMART SM01134 72 233 1.3E-72 T 13-10-2018 AP3564_04935 40a9d6ddd477295531ebcdeb53d2ad13 456 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 320 426 1.3E-15 T 13-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AP3564_04935 40a9d6ddd477295531ebcdeb53d2ad13 456 SUPERFAMILY SSF56601 9 316 9.3E-78 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AP3564_04935 40a9d6ddd477295531ebcdeb53d2ad13 456 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 37 291 3.8E-85 T 13-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 AP3564_04935 40a9d6ddd477295531ebcdeb53d2ad13 456 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 71 82 3.7E-16 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AP3564_04935 40a9d6ddd477295531ebcdeb53d2ad13 456 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 128 145 3.7E-16 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AP3564_04935 40a9d6ddd477295531ebcdeb53d2ad13 456 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 155 168 3.7E-16 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AP3564_04935 40a9d6ddd477295531ebcdeb53d2ad13 456 Gene3D G3DSA:3.40.710.10 33 316 1.6E-91 T 13-10-2018 AP3564_04935 40a9d6ddd477295531ebcdeb53d2ad13 456 SMART SM00936 316 426 1.7E-15 T 13-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AP3564_04935 40a9d6ddd477295531ebcdeb53d2ad13 456 SUPERFAMILY SSF69189 308 403 1.8E-16 T 13-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AP3564_04935 40a9d6ddd477295531ebcdeb53d2ad13 456 Gene3D G3DSA:2.60.410.10 318 426 3.0E-16 T 13-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AP3564_10785 9abf12a9e0be8db86eee905a0c228c5f 236 SUPERFAMILY SSF117916 4 85 3.92E-17 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily AP3564_10785 9abf12a9e0be8db86eee905a0c228c5f 236 Pfam PF01883 Iron-sulfur cluster assembly protein 5 77 3.8E-14 T 13-10-2018 IPR002744 MIP18 family-like AP3564_10785 9abf12a9e0be8db86eee905a0c228c5f 236 Gene3D G3DSA:3.30.300.130 1 94 3.5E-18 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily AP3564_05810 57c7a5f1bb1bd34a3e69447af6b24ab9 166 SUPERFAMILY SSF54768 9 76 2.09E-25 T 13-10-2018 AP3564_05810 57c7a5f1bb1bd34a3e69447af6b24ab9 166 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 163 37.555 T 13-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 AP3564_05810 57c7a5f1bb1bd34a3e69447af6b24ab9 166 Pfam PF00333 Ribosomal protein S5, N-terminal domain 11 75 3.1E-33 T 13-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 AP3564_05810 57c7a5f1bb1bd34a3e69447af6b24ab9 166 Gene3D G3DSA:3.30.230.10 74 166 6.2E-38 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AP3564_05810 57c7a5f1bb1bd34a3e69447af6b24ab9 166 SUPERFAMILY SSF54211 80 159 2.78E-27 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AP3564_05810 57c7a5f1bb1bd34a3e69447af6b24ab9 166 ProSitePatterns PS00585 Ribosomal protein S5 signature. 28 60 - T 13-10-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site AP3564_05810 57c7a5f1bb1bd34a3e69447af6b24ab9 166 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 9 163 4.7E-74 T 13-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 AP3564_05810 57c7a5f1bb1bd34a3e69447af6b24ab9 166 Gene3D G3DSA:3.30.160.20 1 73 7.2E-36 T 13-10-2018 AP3564_05810 57c7a5f1bb1bd34a3e69447af6b24ab9 166 Pfam PF03719 Ribosomal protein S5, C-terminal domain 87 157 3.0E-32 T 13-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 AP3564_00215 f0a6b7db09cf5a27a739c5e917b28803 167 TIGRFAM TIGR04045 MSMEG_0567_GNAT: putative N-acetyltransferase, MSMEG_0567 N-terminal domain family 5 150 5.1E-41 T 13-10-2018 IPR024035 GNAT N-acetyltransferase, putative AP3564_00215 f0a6b7db09cf5a27a739c5e917b28803 167 Gene3D G3DSA:3.40.630.30 2 147 3.1E-33 T 13-10-2018 AP3564_00215 f0a6b7db09cf5a27a739c5e917b28803 167 SUPERFAMILY SSF55729 3 149 1.6E-35 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase AP3564_00215 f0a6b7db09cf5a27a739c5e917b28803 167 Pfam PF00583 Acetyltransferase (GNAT) family 30 127 1.9E-13 T 13-10-2018 IPR000182 GNAT domain AP3564_09320 ebd63119a2a01a52121bfb2e7286d751 331 SUPERFAMILY SSF81324 9 138 6.67E-25 T 13-10-2018 AP3564_09320 ebd63119a2a01a52121bfb2e7286d751 331 Gene3D G3DSA:3.40.50.720 97 238 3.4E-27 T 13-10-2018 AP3564_09320 ebd63119a2a01a52121bfb2e7286d751 331 Pfam PF02254 TrkA-N domain 117 239 2.6E-15 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 AP3564_09320 ebd63119a2a01a52121bfb2e7286d751 331 Pfam PF07885 Ion channel 22 96 2.4E-14 T 13-10-2018 IPR013099 Potassium channel domain AP3564_09320 ebd63119a2a01a52121bfb2e7286d751 331 Gene3D G3DSA:1.10.287.70 4 96 1.8E-19 T 13-10-2018 AP3564_09320 ebd63119a2a01a52121bfb2e7286d751 331 SUPERFAMILY SSF51735 115 250 3.05E-17 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_00480 8c510ee0696fb320e5ab39dcacab921d 183 PRINTS PR01011 Glutathione peroxidase family signature 56 72 8.2E-18 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AP3564_00480 8c510ee0696fb320e5ab39dcacab921d 183 PRINTS PR01011 Glutathione peroxidase family signature 145 154 8.2E-18 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AP3564_00480 8c510ee0696fb320e5ab39dcacab921d 183 PRINTS PR01011 Glutathione peroxidase family signature 21 38 8.2E-18 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AP3564_00480 8c510ee0696fb320e5ab39dcacab921d 183 SUPERFAMILY SSF52833 1 182 9.05E-62 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AP3564_00480 8c510ee0696fb320e5ab39dcacab921d 183 Gene3D G3DSA:3.40.30.10 1 183 3.3E-74 T 13-10-2018 AP3564_00480 8c510ee0696fb320e5ab39dcacab921d 183 Pfam PF00255 Glutathione peroxidase 3 110 1.7E-41 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AP3564_00480 8c510ee0696fb320e5ab39dcacab921d 183 PIRSF PIRSF000303 1 183 2.0E-66 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AP3564_00480 8c510ee0696fb320e5ab39dcacab921d 183 ProSitePatterns PS00763 Glutathione peroxidases signature 2. 59 66 - T 13-10-2018 IPR029760 Glutathione peroxidase conserved site Reactome: R-HSA-3299685 AP3564_17025 b273195ccb221da6a8699e236749ba50 403 Gene3D G3DSA:3.30.460.10 2 144 3.4E-57 T 13-10-2018 AP3564_17025 b273195ccb221da6a8699e236749ba50 403 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 170 228 9.9E-12 T 13-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 AP3564_17025 b273195ccb221da6a8699e236749ba50 403 Gene3D G3DSA:1.10.110.30 145 240 3.0E-29 T 13-10-2018 AP3564_17025 b273195ccb221da6a8699e236749ba50 403 Gene3D G3DSA:1.20.58.560 242 339 2.8E-34 T 13-10-2018 AP3564_17025 b273195ccb221da6a8699e236749ba50 403 SUPERFAMILY SSF81301 8 139 1.31E-44 T 13-10-2018 AP3564_17025 b273195ccb221da6a8699e236749ba50 403 Hamap MF_01263 CCA-adding enzyme [cca]. 2 396 41.098 T 13-10-2018 IPR023068 CCA-adding enzyme, firmicutes GO:0001680|GO:0004810|GO:0016437 AP3564_17025 b273195ccb221da6a8699e236749ba50 403 Pfam PF13735 tRNA nucleotidyltransferase domain 2 putative 247 391 8.2E-39 T 13-10-2018 IPR032810 CCA-adding enzyme, C-terminal AP3564_17025 b273195ccb221da6a8699e236749ba50 403 Pfam PF01743 Poly A polymerase head domain 22 142 1.7E-38 T 13-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 AP3564_17025 b273195ccb221da6a8699e236749ba50 403 Gene3D G3DSA:1.10.246.80 340 403 2.1E-23 T 13-10-2018 AP3564_17025 b273195ccb221da6a8699e236749ba50 403 SUPERFAMILY SSF81891 141 397 3.53E-53 T 13-10-2018 AP3564_06390 0e911dbbc63a08e0d98e0851e5ba8afc 313 Hamap MF_01987 Ribokinase [rbsK]. 4 304 25.173 T 13-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 AP3564_06390 0e911dbbc63a08e0d98e0851e5ba8afc 313 PRINTS PR00990 Ribokinase signature 220 231 2.2E-27 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AP3564_06390 0e911dbbc63a08e0d98e0851e5ba8afc 313 PRINTS PR00990 Ribokinase signature 35 54 2.2E-27 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AP3564_06390 0e911dbbc63a08e0d98e0851e5ba8afc 313 PRINTS PR00990 Ribokinase signature 107 120 2.2E-27 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AP3564_06390 0e911dbbc63a08e0d98e0851e5ba8afc 313 PRINTS PR00990 Ribokinase signature 8 29 2.2E-27 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AP3564_06390 0e911dbbc63a08e0d98e0851e5ba8afc 313 PRINTS PR00990 Ribokinase signature 175 190 2.2E-27 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AP3564_06390 0e911dbbc63a08e0d98e0851e5ba8afc 313 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 40 64 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AP3564_06390 0e911dbbc63a08e0d98e0851e5ba8afc 313 TIGRFAM TIGR02152 D_ribokin_bact: ribokinase 6 303 3.0E-98 T 13-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 AP3564_06390 0e911dbbc63a08e0d98e0851e5ba8afc 313 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 249 262 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AP3564_06390 0e911dbbc63a08e0d98e0851e5ba8afc 313 Gene3D G3DSA:3.40.1190.20 1 309 1.6E-96 T 13-10-2018 IPR029056 Ribokinase-like AP3564_06390 0e911dbbc63a08e0d98e0851e5ba8afc 313 Pfam PF00294 pfkB family carbohydrate kinase 3 297 7.1E-68 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB AP3564_06390 0e911dbbc63a08e0d98e0851e5ba8afc 313 PIRSF PIRSF000535 3 310 1.9E-26 T 13-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 AP3564_06390 0e911dbbc63a08e0d98e0851e5ba8afc 313 SUPERFAMILY SSF53613 3 304 3.43E-82 T 13-10-2018 IPR029056 Ribokinase-like AP3564_11880 d2ceeaae0a18b58a201671fb40459d58 324 Pfam PF01544 CorA-like Mg2+ transporter protein 31 312 1.7E-74 T 13-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 AP3564_11880 d2ceeaae0a18b58a201671fb40459d58 324 Gene3D G3DSA:1.20.58.340 126 237 3.4E-24 T 13-10-2018 AP3564_11880 d2ceeaae0a18b58a201671fb40459d58 324 SUPERFAMILY SSF143865 27 250 4.58E-56 T 13-10-2018 AP3564_11880 d2ceeaae0a18b58a201671fb40459d58 324 TIGRFAM TIGR00383 corA: magnesium and cobalt transport protein CorA 18 316 1.9E-90 T 13-10-2018 IPR004488 Magnesium/cobalt transport protein CorA GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020 AP3564_11880 d2ceeaae0a18b58a201671fb40459d58 324 Gene3D G3DSA:3.30.460.20 10 125 1.7E-28 T 13-10-2018 AP3564_11880 d2ceeaae0a18b58a201671fb40459d58 324 Gene3D G3DSA:1.20.58.340 240 316 1.5E-29 T 13-10-2018 AP3564_11880 d2ceeaae0a18b58a201671fb40459d58 324 SUPERFAMILY SSF144083 251 313 1.18E-20 T 13-10-2018 AP3564_14615 548e75f9c3ddf45641e565aeb0e0e977 421 SUPERFAMILY SSF63882 7 184 1.31E-48 T 13-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AP3564_14615 548e75f9c3ddf45641e565aeb0e0e977 421 Pfam PF03453 MoeA N-terminal region (domain I and II) 8 176 1.0E-39 T 13-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AP3564_14615 548e75f9c3ddf45641e565aeb0e0e977 421 Pfam PF00994 Probable molybdopterin binding domain 190 326 2.4E-25 T 13-10-2018 IPR001453 MoaB/Mog domain AP3564_14615 548e75f9c3ddf45641e565aeb0e0e977 421 SMART SM00852 189 327 2.6E-34 T 13-10-2018 IPR001453 MoaB/Mog domain AP3564_14615 548e75f9c3ddf45641e565aeb0e0e977 421 Gene3D G3DSA:3.40.980.10 184 337 3.2E-117 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily AP3564_14615 548e75f9c3ddf45641e565aeb0e0e977 421 Pfam PF03454 MoeA C-terminal region (domain IV) 340 411 2.7E-16 T 13-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AP3564_14615 548e75f9c3ddf45641e565aeb0e0e977 421 Gene3D G3DSA:2.40.340.10 338 406 3.2E-117 T 13-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AP3564_14615 548e75f9c3ddf45641e565aeb0e0e977 421 Gene3D G3DSA:2.170.190.11 50 150 3.2E-117 T 13-10-2018 AP3564_14615 548e75f9c3ddf45641e565aeb0e0e977 421 SUPERFAMILY SSF63867 337 413 1.83E-17 T 13-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AP3564_14615 548e75f9c3ddf45641e565aeb0e0e977 421 Gene3D G3DSA:3.90.105.10 27 183 3.2E-117 T 13-10-2018 AP3564_14615 548e75f9c3ddf45641e565aeb0e0e977 421 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 186 323 2.3E-31 T 13-10-2018 IPR001453 MoaB/Mog domain AP3564_14615 548e75f9c3ddf45641e565aeb0e0e977 421 SUPERFAMILY SSF53218 186 332 2.88E-39 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily AP3564_08260 1ee30356e4542d51271319e765b9cabf 453 Pfam PF13546 DDE superfamily endonuclease 73 256 1.3E-23 T 13-10-2018 IPR038721 Transposase IS701-like, DDE domain AP3564_08260 1ee30356e4542d51271319e765b9cabf 453 SUPERFAMILY SSF53098 50 412 2.96E-49 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_09740 d748d52105e821623145a9a513edbe33 260 Gene3D G3DSA:3.40.800.10 5 225 5.2E-10 T 13-10-2018 AP3564_09740 d748d52105e821623145a9a513edbe33 260 Pfam PF00491 Arginase family 20 219 5.6E-9 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 AP3564_09740 d748d52105e821623145a9a513edbe33 260 SUPERFAMILY SSF52768 29 220 1.35E-17 T 13-10-2018 IPR023696 Ureohydrolase domain superfamily AP3564_09740 d748d52105e821623145a9a513edbe33 260 PIRSF PIRSF036979 9 224 7.8E-10 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 AP3564_08610 bb0a5afe729cbf2af77dbbd7897694bd 85 Pfam PF00381 PTS HPr component phosphorylation site 2 82 7.4E-32 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like AP3564_08610 bb0a5afe729cbf2af77dbbd7897694bd 85 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 13-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site AP3564_08610 bb0a5afe729cbf2af77dbbd7897694bd 85 SUPERFAMILY SSF55594 3 84 2.09E-29 T 13-10-2018 IPR035895 HPr-like superfamily AP3564_08610 bb0a5afe729cbf2af77dbbd7897694bd 85 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 81 3.2E-31 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like AP3564_08610 bb0a5afe729cbf2af77dbbd7897694bd 85 PRINTS PR00107 Phosphocarrier protein signature 38 53 1.1E-21 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like AP3564_08610 bb0a5afe729cbf2af77dbbd7897694bd 85 PRINTS PR00107 Phosphocarrier protein signature 53 70 1.1E-21 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like AP3564_08610 bb0a5afe729cbf2af77dbbd7897694bd 85 PRINTS PR00107 Phosphocarrier protein signature 13 29 1.1E-21 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like AP3564_08610 bb0a5afe729cbf2af77dbbd7897694bd 85 Gene3D G3DSA:3.30.1340.10 1 85 2.0E-37 T 13-10-2018 IPR035895 HPr-like superfamily AP3564_10655 0a633ab25bc8d370f887001606789722 189 Pfam PF09335 SNARE associated Golgi protein 33 151 8.9E-20 T 13-10-2018 IPR032816 SNARE associated Golgi protein AP3564_14840 6b4cf330d3cb450161efd1090299c0b9 449 Gene3D G3DSA:3.40.50.10860 56 191 7.4E-169 T 13-10-2018 AP3564_14840 6b4cf330d3cb450161efd1090299c0b9 449 Gene3D G3DSA:1.10.285.10 7 383 7.4E-169 T 13-10-2018 AP3564_14840 6b4cf330d3cb450161efd1090299c0b9 449 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 58 186 2.8E-51 T 13-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AP3564_14840 6b4cf330d3cb450161efd1090299c0b9 449 SMART SM00839 206 447 3.6E-100 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AP3564_14840 6b4cf330d3cb450161efd1090299c0b9 449 SUPERFAMILY SSF53223 7 198 1.31E-76 T 13-10-2018 AP3564_14840 6b4cf330d3cb450161efd1090299c0b9 449 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 204 447 4.0E-93 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AP3564_14840 6b4cf330d3cb450161efd1090299c0b9 449 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 237 257 4.5E-30 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AP3564_14840 6b4cf330d3cb450161efd1090299c0b9 449 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 115 129 4.5E-30 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AP3564_14840 6b4cf330d3cb450161efd1090299c0b9 449 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 195 217 4.5E-30 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AP3564_14840 6b4cf330d3cb450161efd1090299c0b9 449 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 373 384 4.5E-30 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AP3564_14840 6b4cf330d3cb450161efd1090299c0b9 449 SUPERFAMILY SSF51735 204 448 3.07E-78 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_14840 6b4cf330d3cb450161efd1090299c0b9 449 PIRSF PIRSF000185 21 449 8.5E-124 T 13-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 AP3564_14840 6b4cf330d3cb450161efd1090299c0b9 449 Gene3D G3DSA:1.10.285.10 384 449 9.6E-9 T 13-10-2018 AP3564_14840 6b4cf330d3cb450161efd1090299c0b9 449 Gene3D G3DSA:3.40.50.720 211 374 7.4E-169 T 13-10-2018 AP3564_18020 b874bc0d1626805ddf08032a4a88a644 486 Gene3D G3DSA:3.40.640.10 86 341 5.4E-59 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_18020 b874bc0d1626805ddf08032a4a88a644 486 SUPERFAMILY SSF53383 20 483 1.07E-118 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_18020 b874bc0d1626805ddf08032a4a88a644 486 Gene3D G3DSA:3.90.1150.10 342 470 3.9E-49 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_18020 b874bc0d1626805ddf08032a4a88a644 486 Hamap MF_00713 Probable glycine dehydrogenase (decarboxylating) subunit 2 [gcvPB]. 7 485 60.621 T 13-10-2018 IPR023012 Probable glycine dehydrogenase (decarboxylating) subunit 2 GO:0004375|GO:0019464 KEGG: 00260+1.4.4.2 AP3564_18020 b874bc0d1626805ddf08032a4a88a644 486 Pfam PF02347 Glycine cleavage system P-protein 31 368 5.0E-10 T 13-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 AP3564_08445 2fe450cb0368c01a7a90144b9a3f0ab8 132 Pfam PF01797 Transposase IS200 like 11 129 7.8E-42 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 AP3564_08445 2fe450cb0368c01a7a90144b9a3f0ab8 132 SUPERFAMILY SSF143422 1 130 2.88E-47 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 AP3564_08445 2fe450cb0368c01a7a90144b9a3f0ab8 132 Gene3D G3DSA:3.30.70.1290 1 132 6.6E-42 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 AP3564_08445 2fe450cb0368c01a7a90144b9a3f0ab8 132 SMART SM01321 10 129 6.9E-44 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 AP3564_09995 2fe450cb0368c01a7a90144b9a3f0ab8 132 Pfam PF01797 Transposase IS200 like 11 129 7.8E-42 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 AP3564_09995 2fe450cb0368c01a7a90144b9a3f0ab8 132 SUPERFAMILY SSF143422 1 130 2.88E-47 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 AP3564_09995 2fe450cb0368c01a7a90144b9a3f0ab8 132 Gene3D G3DSA:3.30.70.1290 1 132 6.6E-42 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 AP3564_09995 2fe450cb0368c01a7a90144b9a3f0ab8 132 SMART SM01321 10 129 6.9E-44 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 AP3564_01175 db5036b8b1ba50315e0a535b8be26e27 808 TIGRFAM TIGR01587 cas3_core: CRISPR-associated helicase Cas3 274 608 3.7E-46 T 13-10-2018 IPR006474 Helicase Cas3, CRISPR-associated, core AP3564_01175 db5036b8b1ba50315e0a535b8be26e27 808 SUPERFAMILY SSF109604 14 121 2.41E-6 T 13-10-2018 AP3564_01175 db5036b8b1ba50315e0a535b8be26e27 808 Gene3D G3DSA:3.40.50.300 467 628 4.5E-14 T 13-10-2018 AP3564_01175 db5036b8b1ba50315e0a535b8be26e27 808 SUPERFAMILY SSF52540 270 603 6.5E-33 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_01175 db5036b8b1ba50315e0a535b8be26e27 808 Pfam PF01966 HD domain 19 118 2.2E-7 T 13-10-2018 IPR006674 HD domain AP3564_01175 db5036b8b1ba50315e0a535b8be26e27 808 TIGRFAM TIGR01596 cas3_HD: CRISPR-associated endonuclease Cas3-HD 18 206 1.2E-28 T 13-10-2018 IPR006483 CRISPR-associated Cas3-type HD domain AP3564_01175 db5036b8b1ba50315e0a535b8be26e27 808 Gene3D G3DSA:3.40.50.300 228 456 2.5E-14 T 13-10-2018 AP3564_01175 db5036b8b1ba50315e0a535b8be26e27 808 Pfam PF04851 Type III restriction enzyme, res subunit 236 404 9.1E-13 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AP3564_01175 db5036b8b1ba50315e0a535b8be26e27 808 SMART SM00490 508 592 1.1E-4 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_01175 db5036b8b1ba50315e0a535b8be26e27 808 SMART SM00487 251 470 6.5E-7 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AP3564_01175 db5036b8b1ba50315e0a535b8be26e27 808 Pfam PF00271 Helicase conserved C-terminal domain 490 592 6.9E-6 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_01175 db5036b8b1ba50315e0a535b8be26e27 808 Gene3D G3DSA:1.10.3210.30 1 206 5.3E-16 T 13-10-2018 IPR038257 CRISPR-associated Cas3-type HD domain superfamily AP3564_06655 297fccdca64becee2e9f6aac248b4c9b 399 Pfam PF07690 Major Facilitator Superfamily 25 356 2.9E-27 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AP3564_06655 297fccdca64becee2e9f6aac248b4c9b 399 Gene3D G3DSA:1.20.1250.20 2 396 4.5E-46 T 13-10-2018 AP3564_06655 297fccdca64becee2e9f6aac248b4c9b 399 SUPERFAMILY SSF103473 13 393 4.05E-52 T 13-10-2018 IPR036259 MFS transporter superfamily AP3564_06655 297fccdca64becee2e9f6aac248b4c9b 399 TIGRFAM TIGR00896 CynX: cyanate transporter 19 375 6.6E-123 T 13-10-2018 IPR004747 Cyanate transport system protein GO:0016021 AP3564_07370 3e1c521201509c99ab512571a45b43e5 195 Pfam PF12804 MobA-like NTP transferase domain 2 157 1.7E-33 T 13-10-2018 IPR025877 MobA-like NTP transferase AP3564_07370 3e1c521201509c99ab512571a45b43e5 195 Gene3D G3DSA:3.90.550.10 1 188 1.3E-47 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AP3564_07370 3e1c521201509c99ab512571a45b43e5 195 SUPERFAMILY SSF53448 2 188 1.83E-27 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AP3564_17370 8bc44a7e15733959a53212d152c4439c 523 Gene3D G3DSA:3.30.1330.90 315 449 1.8E-33 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 AP3564_17370 8bc44a7e15733959a53212d152c4439c 523 TIGRFAM TIGR01327 PGDH: phosphoglycerate dehydrogenase 4 523 6.8E-214 T 13-10-2018 IPR006236 D-3-phosphoglycerate dehydrogenase GO:0004617|GO:0006564 KEGG: 00260+1.1.1.95|KEGG: 00680+1.1.1.95|Reactome: R-HSA-977347 AP3564_17370 8bc44a7e15733959a53212d152c4439c 523 Pfam PF01842 ACT domain 452 511 6.5E-11 T 13-10-2018 IPR002912 ACT domain AP3564_17370 8bc44a7e15733959a53212d152c4439c 523 Gene3D G3DSA:3.40.50.720 90 279 2.0E-114 T 13-10-2018 AP3564_17370 8bc44a7e15733959a53212d152c4439c 523 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 188 210 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AP3564_17370 8bc44a7e15733959a53212d152c4439c 523 SUPERFAMILY SSF143548 315 445 2.2E-34 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 AP3564_17370 8bc44a7e15733959a53212d152c4439c 523 SUPERFAMILY SSF52283 14 125 1.76E-34 T 13-10-2018 AP3564_17370 8bc44a7e15733959a53212d152c4439c 523 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 4 309 1.5E-37 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 AP3564_17370 8bc44a7e15733959a53212d152c4439c 523 SUPERFAMILY SSF51735 94 278 3.95E-59 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_17370 8bc44a7e15733959a53212d152c4439c 523 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 140 167 - T 13-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 AP3564_17370 8bc44a7e15733959a53212d152c4439c 523 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 217 233 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AP3564_17370 8bc44a7e15733959a53212d152c4439c 523 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 103 277 1.5E-61 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AP3564_17370 8bc44a7e15733959a53212d152c4439c 523 Gene3D G3DSA:3.30.70.260 450 523 1.1E-21 T 13-10-2018 AP3564_17370 8bc44a7e15733959a53212d152c4439c 523 Gene3D G3DSA:3.40.50.720 4 288 2.0E-114 T 13-10-2018 AP3564_17370 8bc44a7e15733959a53212d152c4439c 523 SUPERFAMILY SSF55021 449 521 9.16E-19 T 13-10-2018 AP3564_08965 0bf2c13eab06fee59ce8ac96a5199670 406 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 215 234 - T 13-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site AP3564_08965 0bf2c13eab06fee59ce8ac96a5199670 406 SUPERFAMILY SSF53383 1 398 6.64E-134 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_08965 0bf2c13eab06fee59ce8ac96a5199670 406 Gene3D G3DSA:3.40.640.10 34 294 1.9E-184 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_08965 0bf2c13eab06fee59ce8ac96a5199670 406 PIRSF PIRSF005572 20 404 5.6E-53 T 13-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 AP3564_08965 0bf2c13eab06fee59ce8ac96a5199670 406 Pfam PF00266 Aminotransferase class-V 23 391 1.3E-163 T 13-10-2018 IPR000192 Aminotransferase class V domain AP3564_08965 0bf2c13eab06fee59ce8ac96a5199670 406 Gene3D G3DSA:3.90.1150.10 6 395 1.9E-184 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_08965 0bf2c13eab06fee59ce8ac96a5199670 406 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 4 403 2.7E-191 T 13-10-2018 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 AP3564_10195 0dfd9b584613f29a3e1bc230269b22f6 299 SUPERFAMILY SSF55120 75 296 1.76E-71 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AP3564_10195 0dfd9b584613f29a3e1bc230269b22f6 299 Gene3D G3DSA:3.30.2350.10 83 299 1.8E-69 T 13-10-2018 AP3564_10195 0dfd9b584613f29a3e1bc230269b22f6 299 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 16 296 1.2E-78 T 13-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 AP3564_10195 0dfd9b584613f29a3e1bc230269b22f6 299 Pfam PF00849 RNA pseudouridylate synthase 92 240 3.4E-32 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AP3564_10195 0dfd9b584613f29a3e1bc230269b22f6 299 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 133 147 - T 13-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 AP3564_01055 4de5338d45bc74f5f005c853ab900e7f 196 SUPERFAMILY SSF46689 6 74 8.21E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_01055 4de5338d45bc74f5f005c853ab900e7f 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 8.8E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_01055 4de5338d45bc74f5f005c853ab900e7f 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 8.8E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_01055 4de5338d45bc74f5f005c853ab900e7f 196 Gene3D G3DSA:1.10.357.10 59 195 2.9E-16 T 13-10-2018 AP3564_01055 4de5338d45bc74f5f005c853ab900e7f 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 62 2.7E-17 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_01055 4de5338d45bc74f5f005c853ab900e7f 196 Gene3D G3DSA:1.10.10.60 11 58 4.2E-20 T 13-10-2018 AP3564_01055 4de5338d45bc74f5f005c853ab900e7f 196 SUPERFAMILY SSF48498 83 194 4.13E-16 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AP3564_12700 f7041e59c4c4a3064cfd3527d6c58119 264 Gene3D G3DSA:3.30.540.10 1 142 4.2E-45 T 13-10-2018 AP3564_12700 f7041e59c4c4a3064cfd3527d6c58119 264 PRINTS PR00377 Inositol monophosphatase superfamily signature 61 77 1.4E-40 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AP3564_12700 f7041e59c4c4a3064cfd3527d6c58119 264 PRINTS PR00377 Inositol monophosphatase superfamily signature 83 99 1.4E-40 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AP3564_12700 f7041e59c4c4a3064cfd3527d6c58119 264 PRINTS PR00377 Inositol monophosphatase superfamily signature 209 233 1.4E-40 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AP3564_12700 f7041e59c4c4a3064cfd3527d6c58119 264 PRINTS PR00377 Inositol monophosphatase superfamily signature 178 199 1.4E-40 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AP3564_12700 f7041e59c4c4a3064cfd3527d6c58119 264 PRINTS PR00377 Inositol monophosphatase superfamily signature 39 59 1.4E-40 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AP3564_12700 f7041e59c4c4a3064cfd3527d6c58119 264 PRINTS PR00377 Inositol monophosphatase superfamily signature 132 155 1.4E-40 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AP3564_12700 f7041e59c4c4a3064cfd3527d6c58119 264 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 83 96 - T 13-10-2018 IPR020583 Inositol monophosphatase, metal-binding site AP3564_12700 f7041e59c4c4a3064cfd3527d6c58119 264 Pfam PF00459 Inositol monophosphatase family 4 258 5.9E-66 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AP3564_12700 f7041e59c4c4a3064cfd3527d6c58119 264 PRINTS PR00378 Lithium-sensitive myo-inositol monophosphatase family signature 237 259 1.9E-6 T 13-10-2018 IPR020552 Inositol monophosphatase, lithium-sensitive GO:0046854 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363|Reactome: R-HSA-1855183 AP3564_12700 f7041e59c4c4a3064cfd3527d6c58119 264 PRINTS PR00378 Lithium-sensitive myo-inositol monophosphatase family signature 17 36 1.9E-6 T 13-10-2018 IPR020552 Inositol monophosphatase, lithium-sensitive GO:0046854 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363|Reactome: R-HSA-1855183 AP3564_12700 f7041e59c4c4a3064cfd3527d6c58119 264 PRINTS PR00378 Lithium-sensitive myo-inositol monophosphatase family signature 134 152 1.9E-6 T 13-10-2018 IPR020552 Inositol monophosphatase, lithium-sensitive GO:0046854 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363|Reactome: R-HSA-1855183 AP3564_12700 f7041e59c4c4a3064cfd3527d6c58119 264 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 212 226 - T 13-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 AP3564_12700 f7041e59c4c4a3064cfd3527d6c58119 264 SUPERFAMILY SSF56655 2 257 1.7E-75 T 13-10-2018 AP3564_12700 f7041e59c4c4a3064cfd3527d6c58119 264 Gene3D G3DSA:3.40.190.80 143 263 4.5E-35 T 13-10-2018 AP3564_01480 b362f33f7037ba018597816cc846707c 479 Gene3D G3DSA:1.10.10.10 4 77 2.0E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_01480 b362f33f7037ba018597816cc846707c 479 Gene3D G3DSA:3.40.640.10 151 371 7.9E-107 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_01480 b362f33f7037ba018597816cc846707c 479 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 76 4.6E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_01480 b362f33f7037ba018597816cc846707c 479 Gene3D G3DSA:3.90.1150.10 112 472 7.9E-107 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_01480 b362f33f7037ba018597816cc846707c 479 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 1.8E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_01480 b362f33f7037ba018597816cc846707c 479 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 1.8E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_01480 b362f33f7037ba018597816cc846707c 479 SMART SM00345 17 76 7.2E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_01480 b362f33f7037ba018597816cc846707c 479 SUPERFAMILY SSF46785 6 78 2.73E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_01480 b362f33f7037ba018597816cc846707c 479 Pfam PF00155 Aminotransferase class I and II 118 468 9.1E-39 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AP3564_01480 b362f33f7037ba018597816cc846707c 479 SUPERFAMILY SSF53383 106 473 2.02E-94 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_01965 b0dd24c7d58f775b4fc11d85738a4923 207 Gene3D G3DSA:3.20.20.70 2 203 1.5E-33 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_01965 b0dd24c7d58f775b4fc11d85738a4923 207 Pfam PF13353 4Fe-4S single cluster domain 14 150 2.5E-34 T 13-10-2018 AP3564_01965 b0dd24c7d58f775b4fc11d85738a4923 207 SUPERFAMILY SSF102114 26 110 1.44E-12 T 13-10-2018 AP3564_01965 b0dd24c7d58f775b4fc11d85738a4923 207 PIRSF PIRSF000368 1 167 9.4E-47 T 13-10-2018 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic GO:0005737|GO:0043365|GO:0051539|GO:0055114 AP3564_01965 b0dd24c7d58f775b4fc11d85738a4923 207 Pfam PF04055 Radical SAM superfamily 25 93 7.5E-9 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AP3564_00170 7ad6a0cabda4eb6cfc61744b20d3bd21 508 SUPERFAMILY SSF54211 5 169 3.79E-31 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AP3564_00170 7ad6a0cabda4eb6cfc61744b20d3bd21 508 Gene3D G3DSA:3.30.230.10 23 169 7.2E-17 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AP3564_00170 7ad6a0cabda4eb6cfc61744b20d3bd21 508 Pfam PF13541 Subunit ChlI of Mg-chelatase 20 140 7.7E-32 T 13-10-2018 AP3564_00170 7ad6a0cabda4eb6cfc61744b20d3bd21 508 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 402 495 4.8E-21 T 13-10-2018 IPR025158 Mg chelatase-related protein, C-terminal domain AP3564_00170 7ad6a0cabda4eb6cfc61744b20d3bd21 508 SUPERFAMILY SSF52540 191 497 2.32E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_00170 7ad6a0cabda4eb6cfc61744b20d3bd21 508 Pfam PF01078 Magnesium chelatase, subunit ChlI 194 391 4.3E-84 T 13-10-2018 IPR000523 Magnesium chelatase ChlI domain AP3564_00170 7ad6a0cabda4eb6cfc61744b20d3bd21 508 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 10 495 2.8E-139 T 13-10-2018 IPR004482 Mg chelatase-related protein AP3564_00170 7ad6a0cabda4eb6cfc61744b20d3bd21 508 Gene3D G3DSA:3.40.50.300 191 502 7.9E-52 T 13-10-2018 AP3564_00170 7ad6a0cabda4eb6cfc61744b20d3bd21 508 SMART SM00382 214 374 6.0E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_07900 91a09ec1816ccf9b41f5c5a38fccbdd4 563 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 332 515 7.0E-45 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AP3564_07900 91a09ec1816ccf9b41f5c5a38fccbdd4 563 Pfam PF00672 HAMP domain 205 254 4.5E-11 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AP3564_07900 91a09ec1816ccf9b41f5c5a38fccbdd4 563 SMART SM00283 287 562 2.3E-72 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AP3564_07900 91a09ec1816ccf9b41f5c5a38fccbdd4 563 SUPERFAMILY SSF58104 226 561 1.01E-72 T 13-10-2018 AP3564_07900 91a09ec1816ccf9b41f5c5a38fccbdd4 563 Gene3D G3DSA:1.10.287.950 255 562 1.4E-66 T 13-10-2018 AP3564_07900 91a09ec1816ccf9b41f5c5a38fccbdd4 563 Pfam PF12729 Four helix bundle sensory module for signal transduction 2 162 2.3E-7 T 13-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain AP3564_07900 91a09ec1816ccf9b41f5c5a38fccbdd4 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 385 412 9.5E-22 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AP3564_07900 91a09ec1816ccf9b41f5c5a38fccbdd4 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 414 443 9.5E-22 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AP3564_07900 91a09ec1816ccf9b41f5c5a38fccbdd4 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 14 39 9.5E-22 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AP3564_07900 91a09ec1816ccf9b41f5c5a38fccbdd4 563 SMART SM00304 204 258 1.0E-14 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AP3564_07900 91a09ec1816ccf9b41f5c5a38fccbdd4 563 Gene3D G3DSA:1.10.8.500 203 254 9.2E-9 T 13-10-2018 AP3564_10040 11eec9feef7ae6648d8ea4089e18a9f3 264 TIGRFAM TIGR00761 argB: acetylglutamate kinase 11 237 2.2E-76 T 13-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AP3564_10040 11eec9feef7ae6648d8ea4089e18a9f3 264 PIRSF PIRSF000728 2 259 3.3E-85 T 13-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AP3564_10040 11eec9feef7ae6648d8ea4089e18a9f3 264 Gene3D G3DSA:3.40.1160.10 8 245 8.7E-72 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AP3564_10040 11eec9feef7ae6648d8ea4089e18a9f3 264 SUPERFAMILY SSF53633 6 258 2.09E-63 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AP3564_10040 11eec9feef7ae6648d8ea4089e18a9f3 264 Hamap MF_00082 Acetylglutamate kinase [argB]. 8 249 41.016 T 13-10-2018 IPR037528 Acetylglutamate kinase ArgB GO:0003991|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AP3564_10040 11eec9feef7ae6648d8ea4089e18a9f3 264 Pfam PF00696 Amino acid kinase family 10 238 7.9E-41 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 AP3564_05635 af98b7d3b26d0ed890d7cca93b17c55c 261 Gene3D G3DSA:3.30.1330.30 10 88 4.3E-16 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like AP3564_05635 af98b7d3b26d0ed890d7cca93b17c55c 261 SMART SM00967 19 93 6.7E-22 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 AP3564_05635 af98b7d3b26d0ed890d7cca93b17c55c 261 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 19 92 1.2E-23 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 AP3564_05635 af98b7d3b26d0ed890d7cca93b17c55c 261 SUPERFAMILY SSF75217 81 257 3.79E-51 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases AP3564_05635 af98b7d3b26d0ed890d7cca93b17c55c 261 Gene3D G3DSA:3.40.1280.10 89 257 2.0E-56 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AP3564_05635 af98b7d3b26d0ed890d7cca93b17c55c 261 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 18 256 2.2E-88 T 13-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 AP3564_05635 af98b7d3b26d0ed890d7cca93b17c55c 261 Pfam PF00588 SpoU rRNA Methylase family 110 250 3.0E-40 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AP3564_05635 af98b7d3b26d0ed890d7cca93b17c55c 261 SUPERFAMILY SSF55315 17 90 3.43E-19 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like AP3564_18005 ba32d0af0bb239784ed92189bdfc851c 853 SUPERFAMILY SSF51998 131 785 4.27E-148 T 13-10-2018 AP3564_18005 ba32d0af0bb239784ed92189bdfc851c 853 PRINTS PR01183 Ribonucleotide reductase large chain signature 263 282 4.9E-35 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AP3564_18005 ba32d0af0bb239784ed92189bdfc851c 853 PRINTS PR01183 Ribonucleotide reductase large chain signature 508 531 4.9E-35 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AP3564_18005 ba32d0af0bb239784ed92189bdfc851c 853 PRINTS PR01183 Ribonucleotide reductase large chain signature 639 666 4.9E-35 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AP3564_18005 ba32d0af0bb239784ed92189bdfc851c 853 PRINTS PR01183 Ribonucleotide reductase large chain signature 574 597 4.9E-35 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AP3564_18005 ba32d0af0bb239784ed92189bdfc851c 853 PRINTS PR01183 Ribonucleotide reductase large chain signature 546 568 4.9E-35 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AP3564_18005 ba32d0af0bb239784ed92189bdfc851c 853 Gene3D G3DSA:3.20.70.20 358 782 4.0E-123 T 13-10-2018 AP3564_18005 ba32d0af0bb239784ed92189bdfc851c 853 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 131 180 2.5E-7 T 13-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AP3564_18005 ba32d0af0bb239784ed92189bdfc851c 853 Pfam PF02867 Ribonucleotide reductase, barrel domain 188 767 3.6E-126 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AP3564_18005 ba32d0af0bb239784ed92189bdfc851c 853 TIGRFAM TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 128 777 6.4E-184 T 13-10-2018 IPR013344 Ribonucleotide reductase, adenosylcobalamin-dependent GO:0000166|GO:0004748|GO:0031419|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AP3564_18005 ba32d0af0bb239784ed92189bdfc851c 853 Gene3D G3DSA:3.20.70.20 84 310 7.4E-43 T 13-10-2018 AP3564_15820 ea369d0ea41b70cb00b511321979df3b 510 Gene3D G3DSA:3.40.50.12160 66 201 7.6E-36 T 13-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily AP3564_15820 ea369d0ea41b70cb00b511321979df3b 510 Pfam PF04055 Radical SAM superfamily 215 386 1.1E-36 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AP3564_15820 ea369d0ea41b70cb00b511321979df3b 510 Gene3D G3DSA:3.80.30.20 210 443 2.1E-95 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe AP3564_15820 ea369d0ea41b70cb00b511321979df3b 510 Pfam PF01938 TRAM domain 441 502 2.2E-17 T 13-10-2018 IPR002792 TRAM domain AP3564_15820 ea369d0ea41b70cb00b511321979df3b 510 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 215 235 - T 13-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 AP3564_15820 ea369d0ea41b70cb00b511321979df3b 510 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 66 503 76.439 T 13-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 AP3564_15820 ea369d0ea41b70cb00b511321979df3b 510 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 67 502 2.6E-216 T 13-10-2018 AP3564_15820 ea369d0ea41b70cb00b511321979df3b 510 Pfam PF00919 Uncharacterized protein family UPF0004 67 168 4.7E-30 T 13-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 AP3564_15820 ea369d0ea41b70cb00b511321979df3b 510 SMART SM00729 211 429 3.4E-70 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AP3564_15820 ea369d0ea41b70cb00b511321979df3b 510 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 67 499 1.5E-168 T 13-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 AP3564_15820 ea369d0ea41b70cb00b511321979df3b 510 SUPERFAMILY SSF102114 198 434 9.68E-68 T 13-10-2018 AP3564_13455 238dfe506256fce658dbe13d07d6854e 510 Gene3D G3DSA:2.102.10.10 409 509 5.1E-25 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AP3564_13455 238dfe506256fce658dbe13d07d6854e 510 Gene3D G3DSA:3.30.9.10 130 340 2.4E-40 T 13-10-2018 AP3564_13455 238dfe506256fce658dbe13d07d6854e 510 Gene3D G3DSA:3.50.50.60 37 382 2.4E-40 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_13455 238dfe506256fce658dbe13d07d6854e 510 SUPERFAMILY SSF51971 36 388 3.77E-32 T 13-10-2018 AP3564_13455 238dfe506256fce658dbe13d07d6854e 510 Pfam PF00355 Rieske [2Fe-2S] domain 425 508 6.9E-15 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AP3564_13455 238dfe506256fce658dbe13d07d6854e 510 SUPERFAMILY SSF50022 421 507 5.63E-25 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AP3564_13455 238dfe506256fce658dbe13d07d6854e 510 PRINTS PR00162 Rieske 2Fe-2S subunit signature 460 471 1.2E-7 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 AP3564_13455 238dfe506256fce658dbe13d07d6854e 510 PRINTS PR00162 Rieske 2Fe-2S subunit signature 481 493 1.2E-7 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 AP3564_13455 238dfe506256fce658dbe13d07d6854e 510 PRINTS PR00162 Rieske 2Fe-2S subunit signature 493 505 1.2E-7 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 AP3564_13455 238dfe506256fce658dbe13d07d6854e 510 Pfam PF01266 FAD dependent oxidoreductase 37 380 2.5E-38 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AP3564_03985 478422d0fa91fd7c2b6d4dbae12d7bfd 214 TIGRFAM TIGR02837 spore_II_R: stage II sporulation protein R 2 167 6.4E-64 T 13-10-2018 IPR014202 Sporulation stage II, protein R AP3564_03985 478422d0fa91fd7c2b6d4dbae12d7bfd 214 Pfam PF09551 Stage II sporulation protein R (spore_II_R) 38 162 6.5E-49 T 13-10-2018 IPR014202 Sporulation stage II, protein R AP3564_07290 57fcc8afd58d7c035fc75101177ba386 439 SUPERFAMILY SSF55804 289 428 3.01E-20 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 AP3564_07290 57fcc8afd58d7c035fc75101177ba386 439 SUPERFAMILY SSF63520 10 50 6.02E-10 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 AP3564_07290 57fcc8afd58d7c035fc75101177ba386 439 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 290 429 1.6E-19 T 13-10-2018 IPR002178 PTS EIIA type-2 domain AP3564_07290 57fcc8afd58d7c035fc75101177ba386 439 Gene3D G3DSA:3.40.930.10 282 429 1.1E-16 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 AP3564_07290 57fcc8afd58d7c035fc75101177ba386 439 Gene3D G3DSA:1.10.1790.10 65 159 1.4E-19 T 13-10-2018 AP3564_07290 57fcc8afd58d7c035fc75101177ba386 439 Gene3D G3DSA:3.40.50.2300 166 249 1.2E-9 T 13-10-2018 AP3564_07290 57fcc8afd58d7c035fc75101177ba386 439 Gene3D G3DSA:1.10.1790.10 3 51 1.7E-9 T 13-10-2018 AP3564_07290 57fcc8afd58d7c035fc75101177ba386 439 SUPERFAMILY SSF52794 166 242 1.46E-9 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 AP3564_07290 57fcc8afd58d7c035fc75101177ba386 439 SUPERFAMILY SSF63520 56 160 2.22E-22 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 AP3564_07290 57fcc8afd58d7c035fc75101177ba386 439 Pfam PF00874 PRD domain 69 157 1.6E-19 T 13-10-2018 IPR011608 PRD domain GO:0006355 AP3564_07290 57fcc8afd58d7c035fc75101177ba386 439 Pfam PF00874 PRD domain 5 46 1.0E-9 T 13-10-2018 IPR011608 PRD domain GO:0006355 AP3564_14365 7013682b812a8af385adc03c1860bf0a 483 SUPERFAMILY SSF46785 13 83 6.3E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_14365 7013682b812a8af385adc03c1860bf0a 483 Gene3D G3DSA:3.90.1150.10 119 479 2.2E-111 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_14365 7013682b812a8af385adc03c1860bf0a 483 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 39 53 2.8E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_14365 7013682b812a8af385adc03c1860bf0a 483 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 53 69 2.8E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_14365 7013682b812a8af385adc03c1860bf0a 483 Gene3D G3DSA:3.40.640.10 156 375 2.2E-111 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_14365 7013682b812a8af385adc03c1860bf0a 483 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 79 1.6E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_14365 7013682b812a8af385adc03c1860bf0a 483 SMART SM00345 20 79 1.1E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_14365 7013682b812a8af385adc03c1860bf0a 483 Gene3D G3DSA:1.10.10.10 9 79 3.3E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_14365 7013682b812a8af385adc03c1860bf0a 483 SUPERFAMILY SSF53383 106 481 6.69E-96 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_14365 7013682b812a8af385adc03c1860bf0a 483 Pfam PF00155 Aminotransferase class I and II 122 468 8.5E-34 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AP3564_12035 25708a1ab6b1e04afad944c9845a21a5 485 Pfam PF00005 ABC transporter 282 418 5.4E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_12035 25708a1ab6b1e04afad944c9845a21a5 485 Pfam PF00005 ABC transporter 23 162 1.1E-23 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_12035 25708a1ab6b1e04afad944c9845a21a5 485 Gene3D G3DSA:3.40.50.300 263 483 1.0E-51 T 13-10-2018 AP3564_12035 25708a1ab6b1e04afad944c9845a21a5 485 Gene3D G3DSA:3.40.50.300 4 247 5.3E-57 T 13-10-2018 AP3564_12035 25708a1ab6b1e04afad944c9845a21a5 485 SUPERFAMILY SSF52540 282 471 6.06E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_12035 25708a1ab6b1e04afad944c9845a21a5 485 SMART SM00382 285 467 5.9E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_12035 25708a1ab6b1e04afad944c9845a21a5 485 SMART SM00382 31 209 7.2E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_12035 25708a1ab6b1e04afad944c9845a21a5 485 SUPERFAMILY SSF52540 6 224 1.81E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_12035 25708a1ab6b1e04afad944c9845a21a5 485 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_12025 4dae0b113af7324cdaec12e8f8f8c638 226 Pfam PF03070 TENA/THI-4/PQQC family 10 214 1.6E-58 T 13-10-2018 IPR004305 Thiaminase-2/PQQC AP3564_12025 4dae0b113af7324cdaec12e8f8f8c638 226 SUPERFAMILY SSF48613 2 220 4.15E-73 T 13-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 AP3564_12025 4dae0b113af7324cdaec12e8f8f8c638 226 Gene3D G3DSA:1.20.910.10 1 220 2.7E-68 T 13-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 AP3564_12025 4dae0b113af7324cdaec12e8f8f8c638 226 TIGRFAM TIGR04306 salvage_TenA: thiaminase II 11 214 3.6E-74 T 13-10-2018 IPR027574 Thiaminase II GO:0006772|GO:0050334 KEGG: 00730+3.5.99.2|MetaCyc: PWY-6899|MetaCyc: PWY-7356 AP3564_16150 b2dfb97d3989c7965ef5ba5a92f69cda 359 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 276 351 1.2E-30 T 13-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 AP3564_16150 b2dfb97d3989c7965ef5ba5a92f69cda 359 Gene3D G3DSA:2.30.330.10 265 359 7.3E-35 T 13-10-2018 IPR036429 SpoA-like superfamily AP3564_16150 b2dfb97d3989c7965ef5ba5a92f69cda 359 Gene3D G3DSA:3.40.1550.10 27 223 4.7E-55 T 13-10-2018 IPR028976 CheC-like superfamily AP3564_16150 b2dfb97d3989c7965ef5ba5a92f69cda 359 PRINTS PR00956 Flagellar motor switch protein FliN signature 296 312 3.3E-28 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 AP3564_16150 b2dfb97d3989c7965ef5ba5a92f69cda 359 PRINTS PR00956 Flagellar motor switch protein FliN signature 312 325 3.3E-28 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 AP3564_16150 b2dfb97d3989c7965ef5ba5a92f69cda 359 PRINTS PR00956 Flagellar motor switch protein FliN signature 279 295 3.3E-28 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 AP3564_16150 b2dfb97d3989c7965ef5ba5a92f69cda 359 PRINTS PR00956 Flagellar motor switch protein FliN signature 325 340 3.3E-28 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 AP3564_16150 b2dfb97d3989c7965ef5ba5a92f69cda 359 SUPERFAMILY SSF101801 276 357 3.92E-24 T 13-10-2018 IPR036429 SpoA-like superfamily AP3564_16150 b2dfb97d3989c7965ef5ba5a92f69cda 359 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 279 349 1.6E-24 T 13-10-2018 IPR001543 Surface presentation of antigen (SpoA) AP3564_16150 b2dfb97d3989c7965ef5ba5a92f69cda 359 SUPERFAMILY SSF103039 27 216 3.66E-52 T 13-10-2018 IPR028976 CheC-like superfamily AP3564_16150 b2dfb97d3989c7965ef5ba5a92f69cda 359 Pfam PF04509 CheC-like family 32 69 5.4E-13 T 13-10-2018 IPR007597 CheC-like protein GO:0016787 AP3564_16150 b2dfb97d3989c7965ef5ba5a92f69cda 359 Pfam PF04509 CheC-like family 128 163 3.3E-16 T 13-10-2018 IPR007597 CheC-like protein GO:0016787 AP3564_10105 1df24383d0a323fd35b1027b1ad06613 414 Gene3D G3DSA:3.40.47.10 256 400 2.3E-57 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AP3564_10105 1df24383d0a323fd35b1027b1ad06613 414 SUPERFAMILY SSF53901 4 251 3.55E-79 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AP3564_10105 1df24383d0a323fd35b1027b1ad06613 414 SMART SM00825 Beta-ketoacyl synthase 6 413 2.2E-18 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AP3564_10105 1df24383d0a323fd35b1027b1ad06613 414 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 155 171 - T 13-10-2018 IPR018201 Beta-ketoacyl synthase, active site AP3564_10105 1df24383d0a323fd35b1027b1ad06613 414 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 4 409 3.1E-203 T 13-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 AP3564_10105 1df24383d0a323fd35b1027b1ad06613 414 Gene3D G3DSA:3.40.47.10 1 254 4.3E-107 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AP3564_10105 1df24383d0a323fd35b1027b1ad06613 414 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 246 8.3E-63 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal AP3564_10105 1df24383d0a323fd35b1027b1ad06613 414 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 254 368 2.5E-41 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal AP3564_10105 1df24383d0a323fd35b1027b1ad06613 414 PIRSF PIRSF000447 1 413 6.2E-191 T 13-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 AP3564_10105 1df24383d0a323fd35b1027b1ad06613 414 SUPERFAMILY SSF53901 214 411 1.37E-76 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AP3564_17820 ed491d781b938e55525b67b77f1615a6 277 SUPERFAMILY SSF55174 4 70 3.09E-12 T 13-10-2018 AP3564_17820 ed491d781b938e55525b67b77f1615a6 277 PIRSF PIRSF005578 1 268 1.5E-104 T 13-10-2018 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 AP3564_17820 ed491d781b938e55525b67b77f1615a6 277 Gene3D G3DSA:3.40.50.150 64 277 1.0E-85 T 13-10-2018 AP3564_17820 ed491d781b938e55525b67b77f1615a6 277 SUPERFAMILY SSF53335 60 243 1.99E-20 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_17820 ed491d781b938e55525b67b77f1615a6 277 Pfam PF01728 FtsJ-like methyltransferase 61 242 5.5E-20 T 13-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 AP3564_17820 ed491d781b938e55525b67b77f1615a6 277 SMART SM00363 5 70 1.4E-8 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_17820 ed491d781b938e55525b67b77f1615a6 277 TIGRFAM TIGR00478 tly: TlyA family rRNA methyltransferase/putative hemolysin 6 238 7.4E-96 T 13-10-2018 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 AP3564_17820 ed491d781b938e55525b67b77f1615a6 277 Gene3D G3DSA:3.10.290.10 1 63 3.3E-24 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AP3564_17820 ed491d781b938e55525b67b77f1615a6 277 Pfam PF01479 S4 domain 5 47 4.8E-10 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_15185 c4f9d339cea0d52ffb412cfaec749eba 536 SMART SM00267 224 396 6.5E-57 T 13-10-2018 IPR000160 GGDEF domain AP3564_15185 c4f9d339cea0d52ffb412cfaec749eba 536 Pfam PF01627 Hpt domain 11 67 8.7E-6 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AP3564_15185 c4f9d339cea0d52ffb412cfaec749eba 536 Pfam PF00990 Diguanylate cyclase, GGDEF domain 237 391 3.1E-43 T 13-10-2018 IPR000160 GGDEF domain AP3564_15185 c4f9d339cea0d52ffb412cfaec749eba 536 Gene3D G3DSA:3.30.70.270 233 402 1.3E-53 T 13-10-2018 AP3564_15185 c4f9d339cea0d52ffb412cfaec749eba 536 SUPERFAMILY SSF52172 403 535 2.99E-29 T 13-10-2018 IPR011006 CheY-like superfamily AP3564_15185 c4f9d339cea0d52ffb412cfaec749eba 536 SUPERFAMILY SSF47226 2 60 3.53E-6 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 AP3564_15185 c4f9d339cea0d52ffb412cfaec749eba 536 SMART SM00448 108 221 7.9E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_15185 c4f9d339cea0d52ffb412cfaec749eba 536 SMART SM00448 407 528 2.0E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_15185 c4f9d339cea0d52ffb412cfaec749eba 536 Pfam PF00072 Response regulator receiver domain 110 221 4.9E-20 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_15185 c4f9d339cea0d52ffb412cfaec749eba 536 Pfam PF00072 Response regulator receiver domain 409 528 5.5E-21 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_15185 c4f9d339cea0d52ffb412cfaec749eba 536 Gene3D G3DSA:3.40.50.2300 93 232 4.4E-28 T 13-10-2018 AP3564_15185 c4f9d339cea0d52ffb412cfaec749eba 536 SUPERFAMILY SSF52172 107 245 1.85E-31 T 13-10-2018 IPR011006 CheY-like superfamily AP3564_15185 c4f9d339cea0d52ffb412cfaec749eba 536 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 236 396 1.2E-49 T 13-10-2018 IPR000160 GGDEF domain AP3564_15185 c4f9d339cea0d52ffb412cfaec749eba 536 Gene3D G3DSA:3.40.50.2300 403 536 8.2E-31 T 13-10-2018 AP3564_15185 c4f9d339cea0d52ffb412cfaec749eba 536 SUPERFAMILY SSF55073 240 396 5.26E-49 T 13-10-2018 IPR029787 Nucleotide cyclase AP3564_17595 927eb45c0a2607d9a297a8fec218333a 305 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 19 295 1.1E-84 T 13-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 AP3564_17595 927eb45c0a2607d9a297a8fec218333a 305 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 74 96 - T 13-10-2018 IPR030470 UbiA prenyltransferase conserved site AP3564_17595 927eb45c0a2607d9a297a8fec218333a 305 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 14 298 17.202 T 13-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 AP3564_17595 927eb45c0a2607d9a297a8fec218333a 305 Gene3D G3DSA:1.10.357.140 29 180 2.0E-20 T 13-10-2018 AP3564_17595 927eb45c0a2607d9a297a8fec218333a 305 Pfam PF01040 UbiA prenyltransferase family 31 282 1.0E-58 T 13-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 AP3564_19135 f7fa07d7ac2dd4c0cce4a74e82b04b5e 583 Gene3D G3DSA:3.90.700.10 258 367 1.9E-125 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 AP3564_19135 f7fa07d7ac2dd4c0cce4a74e82b04b5e 583 SUPERFAMILY SSF46977 443 579 4.19E-44 T 13-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AP3564_19135 f7fa07d7ac2dd4c0cce4a74e82b04b5e 583 TIGRFAM TIGR01811 sdhA_Bsu: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 6 579 6.0E-286 T 13-10-2018 IPR011280 Succinate dehydrogenase/fumarate reductase flavoprotein subunit, low-GC Gram-positive bacteria KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 AP3564_19135 f7fa07d7ac2dd4c0cce4a74e82b04b5e 583 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 396 411 1.8E-6 T 13-10-2018 AP3564_19135 f7fa07d7ac2dd4c0cce4a74e82b04b5e 583 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 1.8E-6 T 13-10-2018 AP3564_19135 f7fa07d7ac2dd4c0cce4a74e82b04b5e 583 PIRSF PIRSF000171 2 240 9.9E-20 T 13-10-2018 AP3564_19135 f7fa07d7ac2dd4c0cce4a74e82b04b5e 583 PIRSF PIRSF000171 336 574 2.6E-14 T 13-10-2018 AP3564_19135 f7fa07d7ac2dd4c0cce4a74e82b04b5e 583 Pfam PF02910 Fumarate reductase flavoprotein C-term 452 579 8.5E-42 T 13-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AP3564_19135 f7fa07d7ac2dd4c0cce4a74e82b04b5e 583 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 2.6E-9 T 13-10-2018 AP3564_19135 f7fa07d7ac2dd4c0cce4a74e82b04b5e 583 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 356 378 2.6E-9 T 13-10-2018 AP3564_19135 f7fa07d7ac2dd4c0cce4a74e82b04b5e 583 Gene3D G3DSA:1.20.58.100 423 539 5.3E-33 T 13-10-2018 AP3564_19135 f7fa07d7ac2dd4c0cce4a74e82b04b5e 583 SUPERFAMILY SSF51905 6 426 5.81E-66 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_19135 f7fa07d7ac2dd4c0cce4a74e82b04b5e 583 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 39 48 - T 13-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AP3564_19135 f7fa07d7ac2dd4c0cce4a74e82b04b5e 583 Gene3D G3DSA:3.50.50.60 7 403 1.9E-125 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_19135 f7fa07d7ac2dd4c0cce4a74e82b04b5e 583 Pfam PF00890 FAD binding domain 6 392 7.6E-90 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 AP3564_19135 f7fa07d7ac2dd4c0cce4a74e82b04b5e 583 SUPERFAMILY SSF56425 231 353 1.64E-31 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 AP3564_10225 656033d9f609f1f068df4168d71e01fc 255 Pfam PF05690 Thiazole biosynthesis protein ThiG 3 248 5.3E-113 T 13-10-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 AP3564_10225 656033d9f609f1f068df4168d71e01fc 255 Gene3D G3DSA:3.20.20.70 1 255 1.8E-120 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_10225 656033d9f609f1f068df4168d71e01fc 255 Hamap MF_00443 Thiazole synthase [thiG]. 1 254 43.931 T 13-10-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 AP3564_10225 656033d9f609f1f068df4168d71e01fc 255 SUPERFAMILY SSF110399 1 240 6.93E-86 T 13-10-2018 AP3564_10930 a7e7f84d27eb57658ce0a34eff689020 470 Gene3D G3DSA:3.30.465.40 4 237 1.6E-75 T 13-10-2018 AP3564_10930 a7e7f84d27eb57658ce0a34eff689020 470 Gene3D G3DSA:3.30.70.2740 336 417 2.9E-16 T 13-10-2018 AP3564_10930 a7e7f84d27eb57658ce0a34eff689020 470 Pfam PF01565 FAD binding domain 41 180 1.1E-40 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AP3564_10930 a7e7f84d27eb57658ce0a34eff689020 470 Pfam PF02913 FAD linked oxidases, C-terminal domain 217 457 5.8E-72 T 13-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 AP3564_10930 a7e7f84d27eb57658ce0a34eff689020 470 SUPERFAMILY SSF56176 5 217 1.5E-70 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AP3564_10930 a7e7f84d27eb57658ce0a34eff689020 470 Gene3D G3DSA:1.10.45.10 418 458 2.6E-12 T 13-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 AP3564_10930 a7e7f84d27eb57658ce0a34eff689020 470 SUPERFAMILY SSF55103 220 459 7.03E-68 T 13-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AP3564_08390 aec270919845ebec07be2a7adb818b0b 228 SMART SM00382 27 221 3.7E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_08390 aec270919845ebec07be2a7adb818b0b 228 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_08390 aec270919845ebec07be2a7adb818b0b 228 Gene3D G3DSA:3.40.50.300 1 225 1.6E-66 T 13-10-2018 AP3564_08390 aec270919845ebec07be2a7adb818b0b 228 SUPERFAMILY SSF52540 1 221 3.12E-72 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_08390 aec270919845ebec07be2a7adb818b0b 228 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 1 214 2.0E-89 T 13-10-2018 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 AP3564_08390 aec270919845ebec07be2a7adb818b0b 228 Pfam PF00005 ABC transporter 19 165 7.6E-37 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_16790 4c909f3966fea646ae6d222b51a51ae8 183 SUPERFAMILY SSF53335 1 181 6.48E-48 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_16790 4c909f3966fea646ae6d222b51a51ae8 183 PIRSF PIRSF004553 1 183 6.2E-53 T 13-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 AP3564_16790 4c909f3966fea646ae6d222b51a51ae8 183 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 2 182 1.7E-55 T 13-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 AP3564_16790 4c909f3966fea646ae6d222b51a51ae8 183 Gene3D G3DSA:3.40.50.150 1 183 2.1E-57 T 13-10-2018 AP3564_16790 4c909f3966fea646ae6d222b51a51ae8 183 Pfam PF03602 Conserved hypothetical protein 95 1 181 2.1E-59 T 13-10-2018 AP3564_17435 ce399bb2e6f807946e5ec88532e21eba 194 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 7 191 7.4E-59 T 13-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 AP3564_17435 ce399bb2e6f807946e5ec88532e21eba 194 PIRSF PIRSF019345 1 192 1.2E-61 T 13-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 AP3564_17435 ce399bb2e6f807946e5ec88532e21eba 194 Gene3D G3DSA:1.10.10.10 3 85 1.6E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_17435 ce399bb2e6f807946e5ec88532e21eba 194 SUPERFAMILY SSF46785 87 161 2.11E-27 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_17435 ce399bb2e6f807946e5ec88532e21eba 194 Pfam PF04079 Segregation and condensation complex subunit ScpB 11 170 1.0E-60 T 13-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 AP3564_17435 ce399bb2e6f807946e5ec88532e21eba 194 SUPERFAMILY SSF46785 3 83 4.09E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_17435 ce399bb2e6f807946e5ec88532e21eba 194 Hamap MF_01804 Segregation and condensation protein B [scpB]. 6 187 36.344 T 13-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 AP3564_17435 ce399bb2e6f807946e5ec88532e21eba 194 Gene3D G3DSA:1.10.10.10 86 182 4.6E-40 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_17825 71f5db76a1fbd7b6e74c0b55d2f50c5a 633 Pfam PF02780 Transketolase, C-terminal domain 493 615 2.4E-31 T 13-10-2018 IPR033248 Transketolase, C-terminal domain AP3564_17825 71f5db76a1fbd7b6e74c0b55d2f50c5a 633 Pfam PF02779 Transketolase, pyrimidine binding domain 316 476 1.4E-35 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AP3564_17825 71f5db76a1fbd7b6e74c0b55d2f50c5a 633 SUPERFAMILY SSF52518 6 378 3.4E-72 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold AP3564_17825 71f5db76a1fbd7b6e74c0b55d2f50c5a 633 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 4 623 1.9E-292 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AP3564_17825 71f5db76a1fbd7b6e74c0b55d2f50c5a 633 SUPERFAMILY SSF52922 489 623 6.28E-33 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AP3564_17825 71f5db76a1fbd7b6e74c0b55d2f50c5a 633 SUPERFAMILY SSF52518 315 503 9.81E-52 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold AP3564_17825 71f5db76a1fbd7b6e74c0b55d2f50c5a 633 Gene3D G3DSA:3.40.50.970 314 490 2.9E-63 T 13-10-2018 AP3564_17825 71f5db76a1fbd7b6e74c0b55d2f50c5a 633 Gene3D G3DSA:3.40.50.920 493 627 5.8E-39 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AP3564_17825 71f5db76a1fbd7b6e74c0b55d2f50c5a 633 SMART SM00861 316 481 1.4E-61 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AP3564_17825 71f5db76a1fbd7b6e74c0b55d2f50c5a 633 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 2 624 45.312 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AP3564_17825 71f5db76a1fbd7b6e74c0b55d2f50c5a 633 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 5 278 3.1E-119 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AP3564_17825 71f5db76a1fbd7b6e74c0b55d2f50c5a 633 ProSitePatterns PS00801 Transketolase signature 1. 28 47 - T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AP3564_17825 71f5db76a1fbd7b6e74c0b55d2f50c5a 633 ProSitePatterns PS00802 Transketolase signature 2. 422 438 - T 13-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AP3564_17705 f81d05d1b1bae63e14a9f03300eb2790 142 SUPERFAMILY SSF48239 36 131 1.92E-18 T 13-10-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid AP3564_17705 f81d05d1b1bae63e14a9f03300eb2790 142 Pfam PF13249 Squalene-hopene cyclase N-terminal domain 9 128 3.4E-32 T 13-10-2018 IPR032697 Squalene cyclase, N-terminal Reactome: R-HSA-191273|Reactome: R-HSA-2426168 AP3564_17705 f81d05d1b1bae63e14a9f03300eb2790 142 Gene3D G3DSA:1.50.10.20 14 29 3.6E-29 T 13-10-2018 AP3564_17705 f81d05d1b1bae63e14a9f03300eb2790 142 Gene3D G3DSA:1.50.10.20 30 129 3.6E-29 T 13-10-2018 AP3564_09975 2f5e1de9c54163a9f4bf266bae9a512d 1140 SUPERFAMILY SSF47644 620 704 6.67E-25 T 13-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AP3564_09975 2f5e1de9c54163a9f4bf266bae9a512d 1140 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 891 1139 6.0E-56 T 13-10-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AP3564_09975 2f5e1de9c54163a9f4bf266bae9a512d 1140 Pfam PF02607 B12 binding domain 625 698 2.2E-22 T 13-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AP3564_09975 2f5e1de9c54163a9f4bf266bae9a512d 1140 SUPERFAMILY SSF51717 335 597 1.96E-84 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AP3564_09975 2f5e1de9c54163a9f4bf266bae9a512d 1140 Pfam PF00809 Pterin binding enzyme 338 571 4.9E-43 T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AP3564_09975 2f5e1de9c54163a9f4bf266bae9a512d 1140 SUPERFAMILY SSF52242 705 836 1.1E-37 T 13-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 AP3564_09975 2f5e1de9c54163a9f4bf266bae9a512d 1140 Gene3D G3DSA:1.10.288.10 889 947 3.2E-63 T 13-10-2018 AP3564_09975 2f5e1de9c54163a9f4bf266bae9a512d 1140 Pfam PF02310 B12 binding domain 711 802 1.2E-19 T 13-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 AP3564_09975 2f5e1de9c54163a9f4bf266bae9a512d 1140 Gene3D G3DSA:3.20.20.330 1 318 5.3E-111 T 13-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 AP3564_09975 2f5e1de9c54163a9f4bf266bae9a512d 1140 Gene3D G3DSA:1.10.1240.10 615 702 1.3E-27 T 13-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AP3564_09975 2f5e1de9c54163a9f4bf266bae9a512d 1140 SUPERFAMILY SSF82282 2 377 6.41E-116 T 13-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 AP3564_09975 2f5e1de9c54163a9f4bf266bae9a512d 1140 SMART SM01018 622 705 5.9E-38 T 13-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AP3564_09975 2f5e1de9c54163a9f4bf266bae9a512d 1140 Gene3D G3DSA:3.10.196.10 877 1139 3.2E-63 T 13-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AP3564_09975 2f5e1de9c54163a9f4bf266bae9a512d 1140 Gene3D G3DSA:3.40.50.280 707 857 6.2E-46 T 13-10-2018 AP3564_09975 2f5e1de9c54163a9f4bf266bae9a512d 1140 SUPERFAMILY SSF56507 866 1139 6.93E-85 T 13-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AP3564_09975 2f5e1de9c54163a9f4bf266bae9a512d 1140 Pfam PF02574 Homocysteine S-methyltransferase 13 302 8.9E-76 T 13-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 AP3564_09975 2f5e1de9c54163a9f4bf266bae9a512d 1140 PIRSF PIRSF000381 1 1140 0.0 T 13-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AP3564_09975 2f5e1de9c54163a9f4bf266bae9a512d 1140 TIGRFAM TIGR02082 metH: methionine synthase 8 1139 0.0 T 13-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AP3564_09975 2f5e1de9c54163a9f4bf266bae9a512d 1140 Gene3D G3DSA:3.20.20.20 319 614 2.1E-107 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AP3564_00455 c028f4f24146a7dde063324a955e7a1b 634 SUPERFAMILY SSF63520 176 256 1.44E-7 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 AP3564_00455 c028f4f24146a7dde063324a955e7a1b 634 Gene3D G3DSA:3.40.50.2300 380 464 1.3E-7 T 13-10-2018 AP3564_00455 c028f4f24146a7dde063324a955e7a1b 634 SUPERFAMILY SSF63520 270 371 2.09E-20 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 AP3564_00455 c028f4f24146a7dde063324a955e7a1b 634 SUPERFAMILY SSF52794 380 463 8.37E-8 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 AP3564_00455 c028f4f24146a7dde063324a955e7a1b 634 Pfam PF08279 HTH domain 3 52 3.8E-10 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 AP3564_00455 c028f4f24146a7dde063324a955e7a1b 634 SUPERFAMILY SSF55804 484 624 4.36E-22 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 AP3564_00455 c028f4f24146a7dde063324a955e7a1b 634 Gene3D G3DSA:1.10.10.10 1 141 1.3E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_00455 c028f4f24146a7dde063324a955e7a1b 634 Pfam PF05043 Mga helix-turn-helix domain 81 154 7.5E-7 T 13-10-2018 IPR007737 Mga helix-turn-helix domain AP3564_00455 c028f4f24146a7dde063324a955e7a1b 634 Gene3D G3DSA:1.10.1790.10 271 370 1.4E-16 T 13-10-2018 AP3564_00455 c028f4f24146a7dde063324a955e7a1b 634 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 485 624 3.9E-16 T 13-10-2018 IPR002178 PTS EIIA type-2 domain AP3564_00455 c028f4f24146a7dde063324a955e7a1b 634 Pfam PF00874 PRD domain 282 367 5.4E-19 T 13-10-2018 IPR011608 PRD domain GO:0006355 AP3564_00455 c028f4f24146a7dde063324a955e7a1b 634 Pfam PF00874 PRD domain 178 254 2.9E-6 T 13-10-2018 IPR011608 PRD domain GO:0006355 AP3564_00455 c028f4f24146a7dde063324a955e7a1b 634 Gene3D G3DSA:3.40.930.10 481 625 1.9E-14 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 AP3564_06180 0379483fa9cedf882dbaf51d1de3da59 214 SUPERFAMILY SSF51569 3 210 7.69E-63 T 13-10-2018 AP3564_06180 0379483fa9cedf882dbaf51d1de3da59 214 Gene3D G3DSA:3.20.20.70 1 214 1.7E-70 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_06180 0379483fa9cedf882dbaf51d1de3da59 214 Pfam PF01081 KDPG and KHG aldolase 14 201 1.1E-44 T 13-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 AP3564_06180 0379483fa9cedf882dbaf51d1de3da59 214 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 14 207 5.3E-56 T 13-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 AP3564_12750 d97aeb6de7fab0043401c1f59ef279f2 1147 SUPERFAMILY SSF51230 1069 1145 5.23E-22 T 13-10-2018 IPR011053 Single hybrid motif AP3564_12750 d97aeb6de7fab0043401c1f59ef279f2 1147 TIGRFAM TIGR01235 pyruv_carbox: pyruvate carboxylase 8 1145 0.0 T 13-10-2018 IPR005930 Pyruvate carboxylase GO:0004736|GO:0005524|GO:0006090|GO:0006094|GO:0009374 KEGG: 00020+6.4.1.1|KEGG: 00620+6.4.1.1|KEGG: 00720+6.4.1.1|MetaCyc: PWY-5750|MetaCyc: PWY-6142|MetaCyc: PWY-6146|Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 AP3564_12750 d97aeb6de7fab0043401c1f59ef279f2 1147 Gene3D G3DSA:2.40.50.100 1069 1147 3.0E-25 T 13-10-2018 AP3564_12750 d97aeb6de7fab0043401c1f59ef279f2 1147 Gene3D G3DSA:1.10.10.2790 944 979 6.0E-295 T 13-10-2018 AP3564_12750 d97aeb6de7fab0043401c1f59ef279f2 1147 SUPERFAMILY SSF51569 526 837 5.13E-86 T 13-10-2018 AP3564_12750 d97aeb6de7fab0043401c1f59ef279f2 1147 Pfam PF00289 Biotin carboxylase, N-terminal domain 6 114 6.5E-43 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AP3564_12750 d97aeb6de7fab0043401c1f59ef279f2 1147 Gene3D G3DSA:3.10.600.10 464 505 1.4E-7 T 13-10-2018 AP3564_12750 d97aeb6de7fab0043401c1f59ef279f2 1147 Pfam PF02436 Conserved carboxylase domain 829 1029 1.1E-80 T 13-10-2018 IPR003379 Carboxylase, conserved domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 AP3564_12750 d97aeb6de7fab0043401c1f59ef279f2 1147 SUPERFAMILY SSF56059 88 335 1.94E-70 T 13-10-2018 AP3564_12750 d97aeb6de7fab0043401c1f59ef279f2 1147 Gene3D G3DSA:3.10.600.10 506 1061 6.0E-295 T 13-10-2018 AP3564_12750 d97aeb6de7fab0043401c1f59ef279f2 1147 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 120 325 3.5E-77 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AP3564_12750 d97aeb6de7fab0043401c1f59ef279f2 1147 Gene3D G3DSA:3.30.470.130 1 461 2.9E-195 T 13-10-2018 AP3564_12750 d97aeb6de7fab0043401c1f59ef279f2 1147 SUPERFAMILY SSF52440 4 117 1.37E-45 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AP3564_12750 d97aeb6de7fab0043401c1f59ef279f2 1147 Pfam PF00364 Biotin-requiring enzyme 1079 1145 1.9E-18 T 13-10-2018 IPR000089 Biotin/lipoyl attachment AP3564_12750 d97aeb6de7fab0043401c1f59ef279f2 1147 PIRSF PIRSF001594 1 1147 0.0 T 13-10-2018 IPR005930 Pyruvate carboxylase GO:0004736|GO:0005524|GO:0006090|GO:0006094|GO:0009374 KEGG: 00020+6.4.1.1|KEGG: 00620+6.4.1.1|KEGG: 00720+6.4.1.1|MetaCyc: PWY-5750|MetaCyc: PWY-6142|MetaCyc: PWY-6146|Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 AP3564_12750 d97aeb6de7fab0043401c1f59ef279f2 1147 Gene3D G3DSA:3.20.20.70 514 818 6.0E-295 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_12750 d97aeb6de7fab0043401c1f59ef279f2 1147 Gene3D G3DSA:1.10.472.90 819 943 6.0E-295 T 13-10-2018 AP3564_12750 d97aeb6de7fab0043401c1f59ef279f2 1147 SUPERFAMILY SSF51246 342 459 1.26E-37 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AP3564_12750 d97aeb6de7fab0043401c1f59ef279f2 1147 Pfam PF02785 Biotin carboxylase C-terminal domain 346 453 1.3E-32 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AP3564_12750 d97aeb6de7fab0043401c1f59ef279f2 1147 SMART SM00878 346 453 9.0E-52 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AP3564_12750 d97aeb6de7fab0043401c1f59ef279f2 1147 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 290 297 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AP3564_12750 d97aeb6de7fab0043401c1f59ef279f2 1147 SUPERFAMILY SSF89000 834 1011 3.45E-61 T 13-10-2018 AP3564_12750 d97aeb6de7fab0043401c1f59ef279f2 1147 Pfam PF00682 HMGL-like 534 807 4.8E-30 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 AP3564_11640 031f7cffce083e24bb2a19ffdcadfe4d 718 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 263 381 4.9E-12 T 13-10-2018 IPR000014 PAS domain AP3564_11640 031f7cffce083e24bb2a19ffdcadfe4d 718 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 25 139 3.4E-10 T 13-10-2018 IPR000014 PAS domain AP3564_11640 031f7cffce083e24bb2a19ffdcadfe4d 718 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 382 494 3.6E-8 T 13-10-2018 IPR000014 PAS domain AP3564_11640 031f7cffce083e24bb2a19ffdcadfe4d 718 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 145 260 2.8E-11 T 13-10-2018 IPR000014 PAS domain AP3564_11640 031f7cffce083e24bb2a19ffdcadfe4d 718 PRINTS PR00344 Bacterial sensor protein C-terminal signature 663 673 7.6E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_11640 031f7cffce083e24bb2a19ffdcadfe4d 718 PRINTS PR00344 Bacterial sensor protein C-terminal signature 698 711 7.6E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_11640 031f7cffce083e24bb2a19ffdcadfe4d 718 PRINTS PR00344 Bacterial sensor protein C-terminal signature 645 659 7.6E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_11640 031f7cffce083e24bb2a19ffdcadfe4d 718 PRINTS PR00344 Bacterial sensor protein C-terminal signature 674 692 7.6E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_11640 031f7cffce083e24bb2a19ffdcadfe4d 718 SMART SM00388 502 566 4.0E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AP3564_11640 031f7cffce083e24bb2a19ffdcadfe4d 718 SMART SM00091 266 334 4.5E-7 T 13-10-2018 IPR000014 PAS domain AP3564_11640 031f7cffce083e24bb2a19ffdcadfe4d 718 SMART SM00091 386 453 1.0E-4 T 13-10-2018 IPR000014 PAS domain AP3564_11640 031f7cffce083e24bb2a19ffdcadfe4d 718 SMART SM00091 28 94 1.2E-6 T 13-10-2018 IPR000014 PAS domain AP3564_11640 031f7cffce083e24bb2a19ffdcadfe4d 718 SMART SM00091 147 214 0.005 T 13-10-2018 IPR000014 PAS domain AP3564_11640 031f7cffce083e24bb2a19ffdcadfe4d 718 SUPERFAMILY SSF47384 497 564 7.06E-13 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AP3564_11640 031f7cffce083e24bb2a19ffdcadfe4d 718 SUPERFAMILY SSF55785 14 133 1.55E-10 T 13-10-2018 IPR035965 PAS domain superfamily AP3564_11640 031f7cffce083e24bb2a19ffdcadfe4d 718 SUPERFAMILY SSF55874 557 712 3.67E-42 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_11640 031f7cffce083e24bb2a19ffdcadfe4d 718 Pfam PF13426 PAS domain 39 133 9.0E-7 T 13-10-2018 IPR000014 PAS domain AP3564_11640 031f7cffce083e24bb2a19ffdcadfe4d 718 Gene3D G3DSA:3.30.450.20 143 264 5.4E-15 T 13-10-2018 AP3564_11640 031f7cffce083e24bb2a19ffdcadfe4d 718 Pfam PF13188 PAS domain 386 433 1.4E-8 T 13-10-2018 IPR000014 PAS domain AP3564_11640 031f7cffce083e24bb2a19ffdcadfe4d 718 Pfam PF13188 PAS domain 152 197 0.0025 T 13-10-2018 IPR000014 PAS domain AP3564_11640 031f7cffce083e24bb2a19ffdcadfe4d 718 SUPERFAMILY SSF55785 134 252 3.32E-14 T 13-10-2018 IPR035965 PAS domain superfamily AP3564_11640 031f7cffce083e24bb2a19ffdcadfe4d 718 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 609 711 3.3E-24 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_11640 031f7cffce083e24bb2a19ffdcadfe4d 718 Pfam PF00989 PAS fold 266 329 6.7E-8 T 13-10-2018 IPR013767 PAS fold GO:0006355 AP3564_11640 031f7cffce083e24bb2a19ffdcadfe4d 718 Gene3D G3DSA:1.10.287.130 491 565 4.4E-17 T 13-10-2018 AP3564_11640 031f7cffce083e24bb2a19ffdcadfe4d 718 SUPERFAMILY SSF55785 251 355 1.73E-17 T 13-10-2018 IPR035965 PAS domain superfamily AP3564_11640 031f7cffce083e24bb2a19ffdcadfe4d 718 Gene3D G3DSA:3.30.450.20 377 490 1.1E-17 T 13-10-2018 AP3564_11640 031f7cffce083e24bb2a19ffdcadfe4d 718 SMART SM00387 607 714 1.6E-31 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_11640 031f7cffce083e24bb2a19ffdcadfe4d 718 Pfam PF00512 His Kinase A (phospho-acceptor) domain 504 564 8.2E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AP3564_11640 031f7cffce083e24bb2a19ffdcadfe4d 718 SUPERFAMILY SSF55785 371 485 4.19E-17 T 13-10-2018 IPR035965 PAS domain superfamily AP3564_11640 031f7cffce083e24bb2a19ffdcadfe4d 718 Gene3D G3DSA:3.30.565.10 567 716 1.3E-44 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_11640 031f7cffce083e24bb2a19ffdcadfe4d 718 Gene3D G3DSA:3.30.450.20 265 373 4.8E-15 T 13-10-2018 AP3564_11640 031f7cffce083e24bb2a19ffdcadfe4d 718 Gene3D G3DSA:3.30.450.20 23 134 6.1E-14 T 13-10-2018 AP3564_03835 855fb69fd505e4104055410cfb7feab0 262 Gene3D G3DSA:3.20.20.370 2 253 3.5E-108 T 13-10-2018 AP3564_03835 855fb69fd505e4104055410cfb7feab0 262 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 2 246 47.271 T 13-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 AP3564_03835 855fb69fd505e4104055410cfb7feab0 262 SUPERFAMILY SSF88713 3 249 6.15E-103 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AP3564_03835 855fb69fd505e4104055410cfb7feab0 262 Pfam PF03746 LamB/YcsF family 4 242 3.1E-106 T 13-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 AP3564_11840 692ae7507e8099a6aaff34db4ac444fb 571 Gene3D G3DSA:3.50.30.10 6 233 5.5E-83 T 13-10-2018 AP3564_11840 692ae7507e8099a6aaff34db4ac444fb 571 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 447 462 7.0E-33 T 13-10-2018 AP3564_11840 692ae7507e8099a6aaff34db4ac444fb 571 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 293 312 7.0E-33 T 13-10-2018 AP3564_11840 692ae7507e8099a6aaff34db4ac444fb 571 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 500 512 7.0E-33 T 13-10-2018 AP3564_11840 692ae7507e8099a6aaff34db4ac444fb 571 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 464 479 7.0E-33 T 13-10-2018 AP3564_11840 692ae7507e8099a6aaff34db4ac444fb 571 SUPERFAMILY SSF51621 249 547 1.41E-115 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AP3564_11840 692ae7507e8099a6aaff34db4ac444fb 571 SUPERFAMILY SSF52009 125 246 9.29E-39 T 13-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 AP3564_11840 692ae7507e8099a6aaff34db4ac444fb 571 Gene3D G3DSA:1.10.274.10 23 146 5.5E-83 T 13-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 AP3564_11840 692ae7507e8099a6aaff34db4ac444fb 571 PIRSF PIRSF000732 1 571 1.3E-231 T 13-10-2018 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 AP3564_11840 692ae7507e8099a6aaff34db4ac444fb 571 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 250 540 4.5E-130 T 13-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 AP3564_11840 692ae7507e8099a6aaff34db4ac444fb 571 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 184 195 - T 13-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 AP3564_11840 692ae7507e8099a6aaff34db4ac444fb 571 Pfam PF05524 PEP-utilising enzyme, N-terminal 6 126 4.0E-33 T 13-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AP3564_11840 692ae7507e8099a6aaff34db4ac444fb 571 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 4 566 2.3E-261 T 13-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 AP3564_11840 692ae7507e8099a6aaff34db4ac444fb 571 SUPERFAMILY SSF47831 23 143 5.49E-37 T 13-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 AP3564_11840 692ae7507e8099a6aaff34db4ac444fb 571 Gene3D G3DSA:3.20.20.60 234 570 3.8E-131 T 13-10-2018 AP3564_11840 692ae7507e8099a6aaff34db4ac444fb 571 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 447 465 - T 13-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 AP3564_11840 692ae7507e8099a6aaff34db4ac444fb 571 Pfam PF00391 PEP-utilising enzyme, mobile domain 153 225 1.7E-24 T 13-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AP3564_16240 ba0bed0a2f96f590408a7caffcc611ad 161 Gene3D G3DSA:3.60.20.10 1 161 6.1E-62 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AP3564_16240 ba0bed0a2f96f590408a7caffcc611ad 161 PIRSF PIRSF039093 1 161 1.1E-77 T 13-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 AP3564_16240 ba0bed0a2f96f590408a7caffcc611ad 161 SUPERFAMILY SSF56235 1 160 1.27E-52 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AP3564_16240 ba0bed0a2f96f590408a7caffcc611ad 161 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 1 161 5.8E-78 T 13-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 AP3564_16240 ba0bed0a2f96f590408a7caffcc611ad 161 Pfam PF00227 Proteasome subunit 1 159 1.7E-23 T 13-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 AP3564_08680 dde85d287a3b608126c97244f0703e0f 304 SUPERFAMILY SSF56349 2 298 4.12E-50 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AP3564_08680 dde85d287a3b608126c97244f0703e0f 304 Gene3D G3DSA:1.10.150.130 1 94 1.7E-19 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal AP3564_08680 dde85d287a3b608126c97244f0703e0f 304 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 2 84 3.2E-13 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 AP3564_08680 dde85d287a3b608126c97244f0703e0f 304 Pfam PF00589 Phage integrase family 110 290 9.5E-30 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AP3564_08680 dde85d287a3b608126c97244f0703e0f 304 Gene3D G3DSA:1.10.443.10 104 303 1.5E-41 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AP3564_06415 322f636f186606e3b495c62fe6b3ab1c 493 SUPERFAMILY SSF53067 246 474 2.38E-30 T 13-10-2018 AP3564_06415 322f636f186606e3b495c62fe6b3ab1c 493 Gene3D G3DSA:3.30.420.40 234 482 1.1E-96 T 13-10-2018 AP3564_06415 322f636f186606e3b495c62fe6b3ab1c 493 TIGRFAM TIGR02627 rhamnulo_kin: rhamnulokinase 4 458 3.9E-181 T 13-10-2018 IPR013449 Rhamnulokinase GO:0008993|GO:0019301 KEGG: 00040+2.7.1.5|KEGG: 00051+2.7.1.5 AP3564_06415 322f636f186606e3b495c62fe6b3ab1c 493 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 241 4.0E-37 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AP3564_06415 322f636f186606e3b495c62fe6b3ab1c 493 PIRSF PIRSF000538 1 483 2.1E-44 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AP3564_06415 322f636f186606e3b495c62fe6b3ab1c 493 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 250 438 8.9E-22 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AP3564_06415 322f636f186606e3b495c62fe6b3ab1c 493 Hamap MF_01535 Rhamnulokinase [rhaB]. 3 480 51.393 T 13-10-2018 IPR013449 Rhamnulokinase GO:0008993|GO:0019301 KEGG: 00040+2.7.1.5|KEGG: 00051+2.7.1.5 AP3564_06415 322f636f186606e3b495c62fe6b3ab1c 493 Gene3D G3DSA:3.30.420.40 1 233 8.7E-75 T 13-10-2018 AP3564_06415 322f636f186606e3b495c62fe6b3ab1c 493 SUPERFAMILY SSF53067 3 243 5.42E-49 T 13-10-2018 AP3564_03870 c19e24e9b73a2201e93e76cf987c7247 246 SUPERFAMILY SSF143842 38 244 1.29E-46 T 13-10-2018 IPR036209 YwmB-like superfamily AP3564_03870 c19e24e9b73a2201e93e76cf987c7247 246 Pfam PF08680 TATA-box binding 51 246 1.1E-46 T 13-10-2018 IPR014794 TATA-box binding AP3564_03870 c19e24e9b73a2201e93e76cf987c7247 246 Gene3D G3DSA:3.30.360.40 172 246 1.3E-30 T 13-10-2018 AP3564_03870 c19e24e9b73a2201e93e76cf987c7247 246 Gene3D G3DSA:3.30.2030.10 35 170 2.5E-32 T 13-10-2018 AP3564_17920 b9f8703852c6dc733ce8c0cc47ba1a78 353 Pfam PF01321 Creatinase/Prolidase N-terminal domain 3 127 1.8E-31 T 13-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 AP3564_17920 b9f8703852c6dc733ce8c0cc47ba1a78 353 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 283 295 - T 13-10-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site AP3564_17920 b9f8703852c6dc733ce8c0cc47ba1a78 353 Gene3D G3DSA:3.40.350.10 1 127 4.0E-40 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AP3564_17920 b9f8703852c6dc733ce8c0cc47ba1a78 353 PRINTS PR00599 Methionine aminopeptidase-1 signature 207 223 2.0E-5 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AP3564_17920 b9f8703852c6dc733ce8c0cc47ba1a78 353 PRINTS PR00599 Methionine aminopeptidase-1 signature 305 317 2.0E-5 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AP3564_17920 b9f8703852c6dc733ce8c0cc47ba1a78 353 Pfam PF00557 Metallopeptidase family M24 136 337 1.2E-71 T 13-10-2018 IPR000994 Peptidase M24 AP3564_17920 b9f8703852c6dc733ce8c0cc47ba1a78 353 SUPERFAMILY SSF55920 83 347 4.32E-90 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like AP3564_17920 b9f8703852c6dc733ce8c0cc47ba1a78 353 Gene3D G3DSA:3.90.230.10 128 353 1.6E-90 T 13-10-2018 AP3564_17920 b9f8703852c6dc733ce8c0cc47ba1a78 353 SUPERFAMILY SSF53092 2 125 3.24E-28 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AP3564_19220 2c9b91fb5ce4ceef687f5efa27591887 344 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 9 341 48.852 T 13-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 AP3564_19220 2c9b91fb5ce4ceef687f5efa27591887 344 Gene3D G3DSA:3.30.930.10 8 344 3.0E-128 T 13-10-2018 AP3564_19220 2c9b91fb5ce4ceef687f5efa27591887 344 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 40 342 4.5E-115 T 13-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 AP3564_19220 2c9b91fb5ce4ceef687f5efa27591887 344 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 20 88 2.2E-24 T 13-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 AP3564_19220 2c9b91fb5ce4ceef687f5efa27591887 344 Pfam PF01409 tRNA synthetases class II core domain (F) 93 341 2.4E-108 T 13-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 AP3564_19220 2c9b91fb5ce4ceef687f5efa27591887 344 SUPERFAMILY SSF46589 13 100 2.04E-21 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 AP3564_19220 2c9b91fb5ce4ceef687f5efa27591887 344 SUPERFAMILY SSF55681 93 342 7.01E-83 T 13-10-2018 AP3564_14460 05300a4a78b14a899f24f38010f98a7f 417 Gene3D G3DSA:3.30.420.10 141 325 3.4E-23 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AP3564_14460 05300a4a78b14a899f24f38010f98a7f 417 SUPERFAMILY SSF46689 48 133 1.16E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_14460 05300a4a78b14a899f24f38010f98a7f 417 Pfam PF09299 Mu transposase, C-terminal 332 385 1.6E-8 T 13-10-2018 IPR015378 Transposase-like, Mu, C-terminal AP3564_14460 05300a4a78b14a899f24f38010f98a7f 417 Pfam PF13565 Homeodomain-like domain 53 130 3.8E-12 T 13-10-2018 AP3564_14460 05300a4a78b14a899f24f38010f98a7f 417 Pfam PF00665 Integrase core domain 154 269 8.6E-23 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AP3564_14460 05300a4a78b14a899f24f38010f98a7f 417 SUPERFAMILY SSF53098 148 312 1.2E-33 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_00965 05300a4a78b14a899f24f38010f98a7f 417 Gene3D G3DSA:3.30.420.10 141 325 3.4E-23 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AP3564_00965 05300a4a78b14a899f24f38010f98a7f 417 SUPERFAMILY SSF46689 48 133 1.16E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_00965 05300a4a78b14a899f24f38010f98a7f 417 Pfam PF09299 Mu transposase, C-terminal 332 385 1.6E-8 T 13-10-2018 IPR015378 Transposase-like, Mu, C-terminal AP3564_00965 05300a4a78b14a899f24f38010f98a7f 417 Pfam PF13565 Homeodomain-like domain 53 130 3.8E-12 T 13-10-2018 AP3564_00965 05300a4a78b14a899f24f38010f98a7f 417 Pfam PF00665 Integrase core domain 154 269 8.6E-23 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AP3564_00965 05300a4a78b14a899f24f38010f98a7f 417 SUPERFAMILY SSF53098 148 312 1.2E-33 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_12870 05300a4a78b14a899f24f38010f98a7f 417 Gene3D G3DSA:3.30.420.10 141 325 3.4E-23 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AP3564_12870 05300a4a78b14a899f24f38010f98a7f 417 SUPERFAMILY SSF46689 48 133 1.16E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_12870 05300a4a78b14a899f24f38010f98a7f 417 Pfam PF09299 Mu transposase, C-terminal 332 385 1.6E-8 T 13-10-2018 IPR015378 Transposase-like, Mu, C-terminal AP3564_12870 05300a4a78b14a899f24f38010f98a7f 417 Pfam PF13565 Homeodomain-like domain 53 130 3.8E-12 T 13-10-2018 AP3564_12870 05300a4a78b14a899f24f38010f98a7f 417 Pfam PF00665 Integrase core domain 154 269 8.6E-23 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AP3564_12870 05300a4a78b14a899f24f38010f98a7f 417 SUPERFAMILY SSF53098 148 312 1.2E-33 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_16085 1e985f649762fb77318828687cad9802 208 Gene3D G3DSA:3.40.1550.10 5 208 5.2E-59 T 13-10-2018 IPR028976 CheC-like superfamily AP3564_16085 1e985f649762fb77318828687cad9802 208 SUPERFAMILY SSF103039 7 207 3.79E-50 T 13-10-2018 IPR028976 CheC-like superfamily AP3564_16085 1e985f649762fb77318828687cad9802 208 Pfam PF04509 CheC-like family 110 145 3.1E-11 T 13-10-2018 IPR007597 CheC-like protein GO:0016787 AP3564_16085 1e985f649762fb77318828687cad9802 208 Pfam PF04509 CheC-like family 13 46 1.5E-13 T 13-10-2018 IPR007597 CheC-like protein GO:0016787 AP3564_15975 d3d9c8f89561dc863a5c19ab008b0add 326 SUPERFAMILY SSF52374 18 181 2.82E-28 T 13-10-2018 AP3564_15975 d3d9c8f89561dc863a5c19ab008b0add 326 SUPERFAMILY SSF82114 175 314 1.72E-46 T 13-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 AP3564_15975 d3d9c8f89561dc863a5c19ab008b0add 326 Pfam PF06574 FAD synthetase 15 168 4.3E-49 T 13-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 AP3564_15975 d3d9c8f89561dc863a5c19ab008b0add 326 Gene3D G3DSA:3.40.50.620 4 187 4.6E-56 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AP3564_15975 d3d9c8f89561dc863a5c19ab008b0add 326 Pfam PF01687 Riboflavin kinase 186 311 3.5E-39 T 13-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 AP3564_15975 d3d9c8f89561dc863a5c19ab008b0add 326 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 21 86 2.8E-10 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AP3564_15975 d3d9c8f89561dc863a5c19ab008b0add 326 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 21 312 1.3E-99 T 13-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 AP3564_15975 d3d9c8f89561dc863a5c19ab008b0add 326 PIRSF PIRSF004491 2 319 1.6E-105 T 13-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 AP3564_15975 d3d9c8f89561dc863a5c19ab008b0add 326 Gene3D G3DSA:2.40.30.30 188 326 1.7E-44 T 13-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 AP3564_15975 d3d9c8f89561dc863a5c19ab008b0add 326 SMART SM00904 185 312 4.1E-63 T 13-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 AP3564_04180 5929f861670b61f7593cbcac3cfe0ebb 282 Pfam PF17284 Spermidine synthase tetramerisation domain 13 64 5.3E-18 T 13-10-2018 IPR035246 Spermidine synthase, tetramerisation domain KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 AP3564_04180 5929f861670b61f7593cbcac3cfe0ebb 282 ProSitePatterns PS01330 Polyamine biosynthesis (PABS) domain signature. 89 102 - T 13-10-2018 IPR030373 Polyamine biosynthesis domain, conserved site KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 AP3564_04180 5929f861670b61f7593cbcac3cfe0ebb 282 TIGRFAM TIGR00417 speE: spermidine synthase 14 276 5.8E-94 T 13-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 AP3564_04180 5929f861670b61f7593cbcac3cfe0ebb 282 Gene3D G3DSA:2.30.140.10 11 62 5.5E-21 T 13-10-2018 IPR037163 Spermidine synthase, tetramerisation domain superfamily KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 AP3564_04180 5929f861670b61f7593cbcac3cfe0ebb 282 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 13 282 38.416 T 13-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 AP3564_04180 5929f861670b61f7593cbcac3cfe0ebb 282 SUPERFAMILY SSF53335 11 281 1.66E-84 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_04180 5929f861670b61f7593cbcac3cfe0ebb 282 Pfam PF01564 Spermine/spermidine synthase domain 69 251 2.1E-62 T 13-10-2018 AP3564_04180 5929f861670b61f7593cbcac3cfe0ebb 282 Gene3D G3DSA:3.40.50.150 63 282 4.9E-72 T 13-10-2018 AP3564_08995 9facc078e74a553ce797b507b98489c5 469 Pfam PF02872 5'-nucleotidase, C-terminal domain 288 427 9.1E-14 T 13-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AP3564_08995 9facc078e74a553ce797b507b98489c5 469 Gene3D G3DSA:3.90.780.10 283 464 2.0E-13 T 13-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AP3564_08995 9facc078e74a553ce797b507b98489c5 469 PIRSF PIRSF036361 1 465 1.0E-175 T 13-10-2018 IPR011240 Phosphoesterase-related protein YunD AP3564_08995 9facc078e74a553ce797b507b98489c5 469 Gene3D G3DSA:3.60.21.10 1 282 4.3E-56 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like AP3564_08995 9facc078e74a553ce797b507b98489c5 469 Pfam PF00149 Calcineurin-like phosphoesterase 6 205 2.1E-9 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AP3564_08995 9facc078e74a553ce797b507b98489c5 469 PRINTS PR01607 Apyrase family signature 188 211 9.7E-16 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AP3564_08995 9facc078e74a553ce797b507b98489c5 469 PRINTS PR01607 Apyrase family signature 414 433 9.7E-16 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AP3564_08995 9facc078e74a553ce797b507b98489c5 469 PRINTS PR01607 Apyrase family signature 216 236 9.7E-16 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AP3564_08995 9facc078e74a553ce797b507b98489c5 469 PRINTS PR01607 Apyrase family signature 3 21 9.7E-16 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AP3564_08995 9facc078e74a553ce797b507b98489c5 469 PRINTS PR01607 Apyrase family signature 169 186 9.7E-16 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AP3564_08995 9facc078e74a553ce797b507b98489c5 469 SUPERFAMILY SSF55816 287 463 7.19E-26 T 13-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AP3564_08995 9facc078e74a553ce797b507b98489c5 469 SUPERFAMILY SSF56300 4 278 1.1E-64 T 13-10-2018 AP3564_00730 ca415c05d7d92a76f66a12fd086b89a2 376 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 13 364 4.5E-127 T 13-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 AP3564_00730 ca415c05d7d92a76f66a12fd086b89a2 376 SUPERFAMILY SSF51246 311 374 1.65E-12 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AP3564_00730 ca415c05d7d92a76f66a12fd086b89a2 376 SUPERFAMILY SSF56059 109 307 3.18E-66 T 13-10-2018 AP3564_00730 ca415c05d7d92a76f66a12fd086b89a2 376 Gene3D G3DSA:3.30.470.20 188 376 6.0E-74 T 13-10-2018 AP3564_00730 ca415c05d7d92a76f66a12fd086b89a2 376 Pfam PF02222 ATP-grasp domain 119 286 2.8E-59 T 13-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type AP3564_00730 ca415c05d7d92a76f66a12fd086b89a2 376 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 7 78 5.4E-6 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AP3564_00730 ca415c05d7d92a76f66a12fd086b89a2 376 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 13 361 41.886 T 13-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 AP3564_00730 ca415c05d7d92a76f66a12fd086b89a2 376 SUPERFAMILY SSF52440 10 96 5.32E-27 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AP3564_00730 ca415c05d7d92a76f66a12fd086b89a2 376 Gene3D G3DSA:3.30.1490.20 119 187 1.2E-27 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AP3564_00730 ca415c05d7d92a76f66a12fd086b89a2 376 Gene3D G3DSA:3.40.50.20 1 118 5.6E-46 T 13-10-2018 AP3564_06600 6632f165b47e8d863c261001263c7fb1 90 Pfam PF02515 CoA-transferase family III 9 90 3.8E-27 T 13-10-2018 IPR003673 CoA-transferase family III GO:0003824 AP3564_06600 6632f165b47e8d863c261001263c7fb1 90 Gene3D G3DSA:3.40.50.10540 6 90 4.5E-29 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily AP3564_06600 6632f165b47e8d863c261001263c7fb1 90 SUPERFAMILY SSF89796 6 90 8.5E-28 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily AP3564_01970 321707e861b7e62392e46e7cef255f6f 237 Gene3D G3DSA:1.10.150.320 140 214 8.7E-13 T 13-10-2018 AP3564_01970 321707e861b7e62392e46e7cef255f6f 237 SUPERFAMILY SSF47781 134 217 3.56E-16 T 13-10-2018 IPR010994 RuvA domain 2-like AP3564_01970 321707e861b7e62392e46e7cef255f6f 237 Pfam PF12836 Helix-hairpin-helix motif 153 213 7.9E-15 T 13-10-2018 AP3564_18255 e84c6f11ec06183f14ddd6db1ab603ea 279 Gene3D G3DSA:1.10.3470.10 95 277 2.1E-10 T 13-10-2018 IPR037294 ABC transporter, BtuC-like AP3564_18255 e84c6f11ec06183f14ddd6db1ab603ea 279 Pfam PF00950 ABC 3 transport family 7 271 2.9E-64 T 13-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 AP3564_18255 e84c6f11ec06183f14ddd6db1ab603ea 279 SUPERFAMILY SSF81345 5 269 4.71E-36 T 13-10-2018 IPR037294 ABC transporter, BtuC-like AP3564_18220 29973f32be2819e40665b384a70a6cc5 558 Gene3D G3DSA:1.10.287.950 253 555 2.5E-53 T 13-10-2018 AP3564_18220 29973f32be2819e40665b384a70a6cc5 558 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 332 491 1.1E-30 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AP3564_18220 29973f32be2819e40665b384a70a6cc5 558 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 378 405 1.1E-14 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AP3564_18220 29973f32be2819e40665b384a70a6cc5 558 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 407 436 1.1E-14 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AP3564_18220 29973f32be2819e40665b384a70a6cc5 558 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 3 28 1.1E-14 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AP3564_18220 29973f32be2819e40665b384a70a6cc5 558 SMART SM00304 198 251 0.0031 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AP3564_18220 29973f32be2819e40665b384a70a6cc5 558 SMART SM00283 280 548 5.6E-32 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AP3564_18220 29973f32be2819e40665b384a70a6cc5 558 SUPERFAMILY SSF58104 245 554 5.76E-55 T 13-10-2018 AP3564_18220 29973f32be2819e40665b384a70a6cc5 558 Gene3D G3DSA:1.20.1480.50 163 252 4.0E-7 T 13-10-2018 AP3564_02970 e6fc5fd3990b378de8b6227525ac0855 429 Gene3D G3DSA:1.10.287.950 235 429 2.0E-43 T 13-10-2018 AP3564_02970 e6fc5fd3990b378de8b6227525ac0855 429 SUPERFAMILY SSF46458 19 173 7.2E-25 T 13-10-2018 IPR009050 Globin-like superfamily AP3564_02970 e6fc5fd3990b378de8b6227525ac0855 429 Pfam PF11563 Protoglobin 28 180 9.4E-29 T 13-10-2018 AP3564_02970 e6fc5fd3990b378de8b6227525ac0855 429 SUPERFAMILY SSF58104 196 427 1.44E-52 T 13-10-2018 AP3564_02970 e6fc5fd3990b378de8b6227525ac0855 429 Gene3D G3DSA:1.10.490.10 18 174 5.4E-30 T 13-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 AP3564_02970 e6fc5fd3990b378de8b6227525ac0855 429 SMART SM00283 190 423 3.6E-22 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AP3564_02970 e6fc5fd3990b378de8b6227525ac0855 429 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 265 423 3.4E-36 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AP3564_09260 dc38568a9bd62a34e0254beac0a52ffd 206 Pfam PF00929 Exonuclease 7 173 4.9E-23 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AP3564_09260 dc38568a9bd62a34e0254beac0a52ffd 206 SMART SM00479 5 182 5.3E-29 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AP3564_09260 dc38568a9bd62a34e0254beac0a52ffd 206 SUPERFAMILY SSF53098 6 178 1.44E-30 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_09260 dc38568a9bd62a34e0254beac0a52ffd 206 Gene3D G3DSA:3.30.420.10 2 202 9.9E-41 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AP3564_09335 cc5d275f749f602c92cc60de6dc5c06b 133 SUPERFAMILY SSF111038 2 133 7.19E-47 T 13-10-2018 IPR035917 YjbQ-like superfamily AP3564_09335 cc5d275f749f602c92cc60de6dc5c06b 133 PIRSF PIRSF004681 1 133 7.4E-37 T 13-10-2018 IPR001602 Uncharacterised protein family UPF0047 AP3564_09335 cc5d275f749f602c92cc60de6dc5c06b 133 Gene3D G3DSA:2.60.120.460 1 133 1.6E-51 T 13-10-2018 IPR035917 YjbQ-like superfamily AP3564_09335 cc5d275f749f602c92cc60de6dc5c06b 133 Pfam PF01894 Uncharacterised protein family UPF0047 17 129 1.1E-38 T 13-10-2018 IPR001602 Uncharacterised protein family UPF0047 AP3564_09335 cc5d275f749f602c92cc60de6dc5c06b 133 TIGRFAM TIGR00149 TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme 4 131 9.9E-53 T 13-10-2018 IPR001602 Uncharacterised protein family UPF0047 AP3564_09335 cc5d275f749f602c92cc60de6dc5c06b 133 ProSitePatterns PS01314 Uncharacterized protein family UPF0047 signature. 95 113 - T 13-10-2018 IPR001602 Uncharacterised protein family UPF0047 AP3564_04240 bb0aee98f77c1e64dfd24c2075b12431 233 Hamap MF_02060 tRNA (guanosine(18)-2'-O)-methyltransferase [trmH]. 31 223 29.803 T 13-10-2018 IPR033671 tRNA (guanosine(18)-2'-O)-methyltransferase GO:0008168|GO:0030488 AP3564_04240 bb0aee98f77c1e64dfd24c2075b12431 233 Gene3D G3DSA:3.40.1280.10 26 232 4.9E-54 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AP3564_04240 bb0aee98f77c1e64dfd24c2075b12431 233 SUPERFAMILY SSF75217 30 187 1.05E-34 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases AP3564_04240 bb0aee98f77c1e64dfd24c2075b12431 233 Pfam PF00588 SpoU rRNA Methylase family 49 186 8.9E-29 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AP3564_03625 27974bf44cb820685dab3f8b9a1adae1 277 Pfam PF01791 DeoC/LacD family aldolase 23 236 1.6E-31 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AP3564_03625 27974bf44cb820685dab3f8b9a1adae1 277 PIRSF PIRSF038992 1 267 1.1E-75 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AP3564_03625 27974bf44cb820685dab3f8b9a1adae1 277 Gene3D G3DSA:3.20.20.70 1 266 8.2E-72 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_03625 27974bf44cb820685dab3f8b9a1adae1 277 SMART SM01133 21 237 3.8E-27 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AP3564_03625 27974bf44cb820685dab3f8b9a1adae1 277 SUPERFAMILY SSF51569 5 253 4.76E-61 T 13-10-2018 AP3564_19635 27974bf44cb820685dab3f8b9a1adae1 277 Pfam PF01791 DeoC/LacD family aldolase 23 236 1.6E-31 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AP3564_19635 27974bf44cb820685dab3f8b9a1adae1 277 PIRSF PIRSF038992 1 267 1.1E-75 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AP3564_19635 27974bf44cb820685dab3f8b9a1adae1 277 Gene3D G3DSA:3.20.20.70 1 266 8.2E-72 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_19635 27974bf44cb820685dab3f8b9a1adae1 277 SMART SM01133 21 237 3.8E-27 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AP3564_19635 27974bf44cb820685dab3f8b9a1adae1 277 SUPERFAMILY SSF51569 5 253 4.76E-61 T 13-10-2018 AP3564_03530 27974bf44cb820685dab3f8b9a1adae1 277 Pfam PF01791 DeoC/LacD family aldolase 23 236 1.6E-31 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AP3564_03530 27974bf44cb820685dab3f8b9a1adae1 277 PIRSF PIRSF038992 1 267 1.1E-75 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AP3564_03530 27974bf44cb820685dab3f8b9a1adae1 277 Gene3D G3DSA:3.20.20.70 1 266 8.2E-72 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_03530 27974bf44cb820685dab3f8b9a1adae1 277 SMART SM01133 21 237 3.8E-27 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AP3564_03530 27974bf44cb820685dab3f8b9a1adae1 277 SUPERFAMILY SSF51569 5 253 4.76E-61 T 13-10-2018 AP3564_19005 4fefc53ab1e359ebde2d4c0e682d87f5 445 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 320 419 1.8E-21 T 13-10-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AP3564_19005 4fefc53ab1e359ebde2d4c0e682d87f5 445 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 156 1.0E-47 T 13-10-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AP3564_19005 4fefc53ab1e359ebde2d4c0e682d87f5 445 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 99 122 - T 13-10-2018 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AP3564_19005 4fefc53ab1e359ebde2d4c0e682d87f5 445 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 420 30.033 T 13-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AP3564_19005 4fefc53ab1e359ebde2d4c0e682d87f5 445 PIRSF PIRSF000445 1 433 2.2E-155 T 13-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AP3564_19005 4fefc53ab1e359ebde2d4c0e682d87f5 445 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 171 306 1.2E-44 T 13-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase AP3564_19005 4fefc53ab1e359ebde2d4c0e682d87f5 445 SUPERFAMILY SSF51735 162 314 6.98E-35 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_19005 4fefc53ab1e359ebde2d4c0e682d87f5 445 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 3 420 5.1E-158 T 13-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AP3564_19005 4fefc53ab1e359ebde2d4c0e682d87f5 445 Gene3D G3DSA:3.30.460.30 1 158 6.8E-56 T 13-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AP3564_19005 4fefc53ab1e359ebde2d4c0e682d87f5 445 SUPERFAMILY SSF69742 1 158 2.62E-48 T 13-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AP3564_19005 4fefc53ab1e359ebde2d4c0e682d87f5 445 Gene3D G3DSA:3.40.50.720 161 313 7.5E-44 T 13-10-2018 AP3564_19005 4fefc53ab1e359ebde2d4c0e682d87f5 445 SUPERFAMILY SSF69075 317 420 9.81E-19 T 13-10-2018 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AP3564_18270 d9acbdd8de0d352c83f5a5244f46a366 88 Pfam PF11116 Protein of unknown function (DUF2624) 2 82 2.8E-27 T 13-10-2018 IPR020277 Protein of unknown function DUF2624 AP3564_18270 d9acbdd8de0d352c83f5a5244f46a366 88 ProDom PD060869 YQFT IG BH1387 3 74 2.0E-13 T 13-10-2018 IPR020277 Protein of unknown function DUF2624 AP3564_09315 cb0df05bceffd3924d0877f0a6117ba7 133 SUPERFAMILY SSF160755 1 132 2.22E-36 T 13-10-2018 IPR036491 YugN-like superfamily AP3564_09315 cb0df05bceffd3924d0877f0a6117ba7 133 Gene3D G3DSA:3.30.310.100 2 122 3.3E-30 T 13-10-2018 IPR036491 YugN-like superfamily AP3564_09315 cb0df05bceffd3924d0877f0a6117ba7 133 Pfam PF08868 YugN-like family 3 132 8.3E-55 T 13-10-2018 IPR014967 Uncharacterised protein family, YugN-like AP3564_05650 a268778cf573a658507344e24313995d 60 Gene3D G3DSA:1.20.5.1030 1 58 6.8E-21 T 13-10-2018 IPR038379 SecE superfamily AP3564_05650 a268778cf573a658507344e24313995d 60 Hamap MF_00422 Protein translocase subunit SecE [secE]. 2 57 13.357 T 13-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AP3564_05650 a268778cf573a658507344e24313995d 60 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 7 35 - T 13-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AP3564_05650 a268778cf573a658507344e24313995d 60 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 6 58 3.2E-22 T 13-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AP3564_05650 a268778cf573a658507344e24313995d 60 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 6 59 2.3E-24 T 13-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 AP3564_05800 e24a3684dff2090b76bef328e95cacf8 178 Gene3D G3DSA:3.90.930.12 2 82 2.4E-35 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05800 e24a3684dff2090b76bef328e95cacf8 178 SUPERFAMILY SSF56053 83 176 2.16E-35 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05800 e24a3684dff2090b76bef328e95cacf8 178 PIRSF PIRSF002162 1 177 2.0E-51 T 13-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05800 e24a3684dff2090b76bef328e95cacf8 178 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 40.498 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AP3564_05800 e24a3684dff2090b76bef328e95cacf8 178 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 13-10-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05800 e24a3684dff2090b76bef328e95cacf8 178 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 4.4E-80 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AP3564_05800 e24a3684dff2090b76bef328e95cacf8 178 Gene3D G3DSA:3.90.930.12 83 178 2.2E-41 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05800 e24a3684dff2090b76bef328e95cacf8 178 Pfam PF00347 Ribosomal protein L6 11 82 6.8E-26 T 13-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05800 e24a3684dff2090b76bef328e95cacf8 178 Pfam PF00347 Ribosomal protein L6 90 164 1.3E-21 T 13-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05800 e24a3684dff2090b76bef328e95cacf8 178 PRINTS PR00059 Ribosomal protein L6 signature 99 115 1.1E-34 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AP3564_05800 e24a3684dff2090b76bef328e95cacf8 178 PRINTS PR00059 Ribosomal protein L6 signature 141 162 1.1E-34 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AP3564_05800 e24a3684dff2090b76bef328e95cacf8 178 PRINTS PR00059 Ribosomal protein L6 signature 71 96 1.1E-34 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AP3564_05800 e24a3684dff2090b76bef328e95cacf8 178 SUPERFAMILY SSF56053 1 82 2.09E-30 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_17745 160c2c1ad212c9f3840eca348d918b96 493 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 25 139 1.5E-20 T 13-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 AP3564_17745 160c2c1ad212c9f3840eca348d918b96 493 Gene3D G3DSA:3.50.50.60 289 488 8.4E-14 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_17745 160c2c1ad212c9f3840eca348d918b96 493 Gene3D G3DSA:3.50.50.60 153 285 5.9E-37 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_17745 160c2c1ad212c9f3840eca348d918b96 493 PRINTS PR00419 Adrenodoxin reductase family signature 154 176 1.3E-26 T 13-10-2018 AP3564_17745 160c2c1ad212c9f3840eca348d918b96 493 PRINTS PR00419 Adrenodoxin reductase family signature 219 229 1.3E-26 T 13-10-2018 AP3564_17745 160c2c1ad212c9f3840eca348d918b96 493 PRINTS PR00419 Adrenodoxin reductase family signature 177 190 1.3E-26 T 13-10-2018 AP3564_17745 160c2c1ad212c9f3840eca348d918b96 493 PRINTS PR00419 Adrenodoxin reductase family signature 295 309 1.3E-26 T 13-10-2018 AP3564_17745 160c2c1ad212c9f3840eca348d918b96 493 SUPERFAMILY SSF51971 151 421 6.47E-66 T 13-10-2018 AP3564_17745 160c2c1ad212c9f3840eca348d918b96 493 Gene3D G3DSA:1.10.1060.10 7 152 1.1E-19 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AP3564_17745 160c2c1ad212c9f3840eca348d918b96 493 SUPERFAMILY SSF46548 2 163 2.09E-35 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AP3564_17745 160c2c1ad212c9f3840eca348d918b96 493 TIGRFAM TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 3 493 2.7E-247 T 13-10-2018 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 GO:0006537|GO:0016639|GO:0055114 AP3564_17745 160c2c1ad212c9f3840eca348d918b96 493 SUPERFAMILY SSF51971 361 489 1.77E-10 T 13-10-2018 AP3564_17745 160c2c1ad212c9f3840eca348d918b96 493 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 153 475 4.0E-28 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AP3564_08405 98dcb800da3f1a0a3bf0947da74bc86d 481 Pfam PF13180 PDZ domain 113 185 2.6E-16 T 13-10-2018 IPR001478 PDZ domain GO:0005515 AP3564_08405 98dcb800da3f1a0a3bf0947da74bc86d 481 Gene3D G3DSA:3.30.750.44 62 351 2.8E-91 T 13-10-2018 AP3564_08405 98dcb800da3f1a0a3bf0947da74bc86d 481 SMART SM00228 112 183 1.6E-17 T 13-10-2018 IPR001478 PDZ domain GO:0005515 AP3564_08405 98dcb800da3f1a0a3bf0947da74bc86d 481 SUPERFAMILY SSF52096 42 381 4.31E-67 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AP3564_08405 98dcb800da3f1a0a3bf0947da74bc86d 481 Gene3D G3DSA:3.90.226.10 200 373 2.8E-91 T 13-10-2018 AP3564_08405 98dcb800da3f1a0a3bf0947da74bc86d 481 Pfam PF03572 Peptidase family S41 214 375 6.2E-48 T 13-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 AP3564_08405 98dcb800da3f1a0a3bf0947da74bc86d 481 SUPERFAMILY SSF47090 387 457 4.19E-18 T 13-10-2018 IPR036365 PGBD-like superfamily AP3564_08405 98dcb800da3f1a0a3bf0947da74bc86d 481 Gene3D G3DSA:1.10.101.10 386 465 8.9E-16 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 AP3564_08405 98dcb800da3f1a0a3bf0947da74bc86d 481 SUPERFAMILY SSF50156 83 204 4.66E-23 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 AP3564_08405 98dcb800da3f1a0a3bf0947da74bc86d 481 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 64 382 3.2E-117 T 13-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 AP3564_08405 98dcb800da3f1a0a3bf0947da74bc86d 481 Gene3D G3DSA:2.30.42.10 112 199 2.8E-91 T 13-10-2018 AP3564_08405 98dcb800da3f1a0a3bf0947da74bc86d 481 Pfam PF01471 Putative peptidoglycan binding domain 398 453 8.5E-17 T 13-10-2018 IPR002477 Peptidoglycan binding-like AP3564_08405 98dcb800da3f1a0a3bf0947da74bc86d 481 SMART SM00245 185 376 1.0E-59 T 13-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 AP3564_12530 bcac34b8707f1ef7e627713a0ffd7729 345 Gene3D G3DSA:3.40.50.1980 233 345 1.5E-38 T 13-10-2018 AP3564_12530 bcac34b8707f1ef7e627713a0ffd7729 345 Gene3D G3DSA:3.40.50.1980 152 232 2.0E-21 T 13-10-2018 AP3564_12530 bcac34b8707f1ef7e627713a0ffd7729 345 Gene3D G3DSA:3.40.50.1980 33 151 4.4E-34 T 13-10-2018 AP3564_12530 bcac34b8707f1ef7e627713a0ffd7729 345 PRINTS PR00690 Adhesin family signature 42 60 3.7E-5 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 AP3564_12530 bcac34b8707f1ef7e627713a0ffd7729 345 PRINTS PR00690 Adhesin family signature 86 103 3.7E-5 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 AP3564_12530 bcac34b8707f1ef7e627713a0ffd7729 345 PRINTS PR00690 Adhesin family signature 73 86 3.7E-5 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 AP3564_12530 bcac34b8707f1ef7e627713a0ffd7729 345 Pfam PF01297 Zinc-uptake complex component A periplasmic 45 343 1.7E-72 T 13-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 AP3564_12530 bcac34b8707f1ef7e627713a0ffd7729 345 SUPERFAMILY SSF53807 42 344 4.91E-83 T 13-10-2018 AP3564_14685 4a1675ce3ee248bb342e556cc955e662 231 Pfam PF04405 Domain of Unknown function (DUF542) 8 61 8.8E-22 T 13-10-2018 IPR019903 Repair of iron centres family AP3564_14685 4a1675ce3ee248bb342e556cc955e662 231 Gene3D G3DSA:1.20.120.520 82 231 4.1E-22 T 13-10-2018 AP3564_14685 4a1675ce3ee248bb342e556cc955e662 231 SUPERFAMILY SSF140683 2 63 9.15E-6 T 13-10-2018 IPR038062 ScdA-like, N-terminal domain superfamily AP3564_14685 4a1675ce3ee248bb342e556cc955e662 231 Gene3D G3DSA:1.10.3910.10 1 68 9.1E-8 T 13-10-2018 IPR038062 ScdA-like, N-terminal domain superfamily AP3564_14685 4a1675ce3ee248bb342e556cc955e662 231 Pfam PF01814 Hemerythrin HHE cation binding domain 82 229 1.6E-24 T 13-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 AP3564_14685 4a1675ce3ee248bb342e556cc955e662 231 TIGRFAM TIGR03652 FeS_repair_RIC: iron-sulfur cluster repair di-iron protein 11 229 8.0E-86 T 13-10-2018 IPR019903 Repair of iron centres family AP3564_10760 969e6167dfcaedab892b9750539c45c2 187 Pfam PF02632 BioY family 27 172 2.8E-37 T 13-10-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 AP3564_10760 969e6167dfcaedab892b9750539c45c2 187 PIRSF PIRSF016661 1 179 4.7E-48 T 13-10-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 AP3564_10760 969e6167dfcaedab892b9750539c45c2 187 Gene3D G3DSA:1.10.1760.20 1 180 3.9E-51 T 13-10-2018 AP3564_03100 b3f845db9c01f347796dede3a6e9a36d 28 Pfam PF09680 Protein of unknown function (Tiny_TM_bacill) 4 27 1.6E-13 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like AP3564_03100 b3f845db9c01f347796dede3a6e9a36d 28 TIGRFAM TIGR01732 tiny_TM_bacill: conserved hypothetical protein 3 27 3.3E-16 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like AP3564_00470 57685fd8c0aa5fbe5be5a72201190345 339 Pfam PF03612 Sorbitol phosphotransferase enzyme II N-terminus 6 190 3.9E-82 T 13-10-2018 IPR011618 Sorbitol phosphotransferase enzyme II, N-terminal GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.198 AP3564_00470 57685fd8c0aa5fbe5be5a72201190345 339 TIGRFAM TIGR00825 EIIBC-GUT: PTS system, glucitol/sorbitol-specific, IIBC component 6 337 1.8E-160 T 13-10-2018 IPR004702 Phosphotransferease, sorbitol phosphotransferase enzyme II GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.198 AP3564_00470 57685fd8c0aa5fbe5be5a72201190345 339 Pfam PF07663 Sorbitol phosphotransferase enzyme II C-terminus 245 337 7.0E-45 T 13-10-2018 IPR011638 Sorbitol phosphotransferase enzyme II, C-terminal GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.198 AP3564_17990 da4f932a9369a64297b86958feb930e0 562 SUPERFAMILY SSF52540 125 382 4.53E-12 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_17990 da4f932a9369a64297b86958feb930e0 562 Pfam PF13401 AAA domain 141 290 2.1E-22 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_17990 da4f932a9369a64297b86958feb930e0 562 Gene3D G3DSA:3.40.50.300 121 303 1.1E-10 T 13-10-2018 AP3564_16440 681e184da470a2dac1a620993830a174 311 Pfam PF02911 Formyl transferase, C-terminal domain 204 302 1.2E-31 T 13-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AP3564_16440 681e184da470a2dac1a620993830a174 311 Pfam PF00551 Formyl transferase 3 180 1.3E-44 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AP3564_16440 681e184da470a2dac1a620993830a174 311 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 133 156 - T 13-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AP3564_16440 681e184da470a2dac1a620993830a174 311 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 3 306 8.7E-119 T 13-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 AP3564_16440 681e184da470a2dac1a620993830a174 311 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 2 305 36.928 T 13-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 AP3564_16440 681e184da470a2dac1a620993830a174 311 SUPERFAMILY SSF50486 205 310 2.2E-34 T 13-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 AP3564_16440 681e184da470a2dac1a620993830a174 311 Gene3D G3DSA:3.40.50.170 1 206 4.3E-91 T 13-10-2018 AP3564_16440 681e184da470a2dac1a620993830a174 311 Gene3D G3DSA:3.10.25.10 207 311 5.4E-42 T 13-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AP3564_16440 681e184da470a2dac1a620993830a174 311 SUPERFAMILY SSF53328 3 205 1.24E-71 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AP3564_12975 13b34201dc6751504673e1cd3bae6bdc 461 SUPERFAMILY SSF50156 95 182 9.01E-19 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 AP3564_12975 13b34201dc6751504673e1cd3bae6bdc 461 SUPERFAMILY SSF52096 43 362 4.97E-72 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AP3564_12975 13b34201dc6751504673e1cd3bae6bdc 461 Pfam PF03572 Peptidase family S41 195 357 1.5E-50 T 13-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 AP3564_12975 13b34201dc6751504673e1cd3bae6bdc 461 Pfam PF01471 Putative peptidoglycan binding domain 381 430 1.3E-11 T 13-10-2018 IPR002477 Peptidoglycan binding-like AP3564_12975 13b34201dc6751504673e1cd3bae6bdc 461 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 49 372 2.2E-120 T 13-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 AP3564_12975 13b34201dc6751504673e1cd3bae6bdc 461 SUPERFAMILY SSF47090 367 437 2.88E-14 T 13-10-2018 IPR036365 PGBD-like superfamily AP3564_12975 13b34201dc6751504673e1cd3bae6bdc 461 Gene3D G3DSA:3.30.750.44 45 333 3.5E-94 T 13-10-2018 AP3564_12975 13b34201dc6751504673e1cd3bae6bdc 461 Gene3D G3DSA:3.90.226.10 185 355 3.5E-94 T 13-10-2018 AP3564_12975 13b34201dc6751504673e1cd3bae6bdc 461 Pfam PF13180 PDZ domain 99 170 1.2E-12 T 13-10-2018 IPR001478 PDZ domain GO:0005515 AP3564_12975 13b34201dc6751504673e1cd3bae6bdc 461 SMART SM00245 170 358 2.5E-71 T 13-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 AP3564_12975 13b34201dc6751504673e1cd3bae6bdc 461 Gene3D G3DSA:2.30.42.10 98 184 3.5E-94 T 13-10-2018 AP3564_12975 13b34201dc6751504673e1cd3bae6bdc 461 Gene3D G3DSA:1.10.101.10 367 446 7.3E-14 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 AP3564_12975 13b34201dc6751504673e1cd3bae6bdc 461 SMART SM00228 98 169 1.3E-18 T 13-10-2018 IPR001478 PDZ domain GO:0005515 AP3564_14665 1a226d79fe7a71af0aea252144a51a84 370 Gene3D G3DSA:3.20.20.70 3 311 1.7E-45 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_14665 1a226d79fe7a71af0aea252144a51a84 370 Pfam PF13353 4Fe-4S single cluster domain 12 119 4.8E-6 T 13-10-2018 AP3564_14665 1a226d79fe7a71af0aea252144a51a84 370 PIRSF PIRSF037420 1 370 3.2E-99 T 13-10-2018 IPR017200 Coenzyme PQQ synthesis protein E AP3564_14665 1a226d79fe7a71af0aea252144a51a84 370 SUPERFAMILY SSF102114 6 338 7.46E-65 T 13-10-2018 AP3564_14665 1a226d79fe7a71af0aea252144a51a84 370 Pfam PF04055 Radical SAM superfamily 15 167 4.6E-17 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AP3564_14665 1a226d79fe7a71af0aea252144a51a84 370 SMART SM00729 9 211 0.008 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AP3564_14665 1a226d79fe7a71af0aea252144a51a84 370 Pfam PF13186 Iron-sulfur cluster-binding domain 276 330 8.5E-5 T 13-10-2018 IPR023885 4Fe4S-binding SPASM domain AP3564_14665 1a226d79fe7a71af0aea252144a51a84 370 TIGRFAM TIGR04053 sam_11: radical SAM protein, BA_1875 family 3 361 5.8E-156 T 13-10-2018 IPR027634 Radical SAM protein, BA_1875 family AP3564_06380 969ea54fb35dde40bde4f099d66a6049 534 Pfam PF00072 Response regulator receiver domain 8 121 5.2E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_06380 969ea54fb35dde40bde4f099d66a6049 534 Gene3D G3DSA:1.10.10.60 429 482 3.4E-17 T 13-10-2018 AP3564_06380 969ea54fb35dde40bde4f099d66a6049 534 SMART SM00448 6 122 1.9E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_06380 969ea54fb35dde40bde4f099d66a6049 534 Gene3D G3DSA:1.10.10.2730 483 529 2.2E-20 T 13-10-2018 AP3564_06380 969ea54fb35dde40bde4f099d66a6049 534 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 497 512 3.6E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AP3564_06380 969ea54fb35dde40bde4f099d66a6049 534 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 512 528 3.6E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AP3564_06380 969ea54fb35dde40bde4f099d66a6049 534 SMART SM00342 445 528 1.4E-32 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AP3564_06380 969ea54fb35dde40bde4f099d66a6049 534 Pfam PF12833 Helix-turn-helix domain 451 529 1.4E-21 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AP3564_06380 969ea54fb35dde40bde4f099d66a6049 534 SUPERFAMILY SSF52172 5 145 1.57E-30 T 13-10-2018 IPR011006 CheY-like superfamily AP3564_06380 969ea54fb35dde40bde4f099d66a6049 534 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 482 524 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AP3564_06380 969ea54fb35dde40bde4f099d66a6049 534 SUPERFAMILY SSF46689 430 479 2.99E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_06380 969ea54fb35dde40bde4f099d66a6049 534 SUPERFAMILY SSF46689 482 530 1.88E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_06380 969ea54fb35dde40bde4f099d66a6049 534 Gene3D G3DSA:3.40.50.2300 5 161 4.9E-30 T 13-10-2018 AP3564_02660 5c50d6fa91869ab6bdcbc23af8335ea3 616 Pfam PF00158 Sigma-54 interaction domain 312 478 5.3E-66 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AP3564_02660 5c50d6fa91869ab6bdcbc23af8335ea3 616 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 596 616 8.5E-9 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AP3564_02660 5c50d6fa91869ab6bdcbc23af8335ea3 616 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 579 596 8.5E-9 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AP3564_02660 5c50d6fa91869ab6bdcbc23af8335ea3 616 Gene3D G3DSA:3.30.450.40 20 207 1.3E-53 T 13-10-2018 IPR029016 GAF-like domain superfamily AP3564_02660 5c50d6fa91869ab6bdcbc23af8335ea3 616 SUPERFAMILY SSF52540 311 550 3.73E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_02660 5c50d6fa91869ab6bdcbc23af8335ea3 616 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 520 529 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site AP3564_02660 5c50d6fa91869ab6bdcbc23af8335ea3 616 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 398 413 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AP3564_02660 5c50d6fa91869ab6bdcbc23af8335ea3 616 SMART SM00382 331 479 2.0E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_02660 5c50d6fa91869ab6bdcbc23af8335ea3 616 SUPERFAMILY SSF46689 520 615 3.94E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_02660 5c50d6fa91869ab6bdcbc23af8335ea3 616 Pfam PF02954 Bacterial regulatory protein, Fis family 574 613 5.3E-14 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AP3564_02660 5c50d6fa91869ab6bdcbc23af8335ea3 616 Gene3D G3DSA:1.10.8.60 483 543 5.9E-14 T 13-10-2018 AP3564_02660 5c50d6fa91869ab6bdcbc23af8335ea3 616 Gene3D G3DSA:1.10.10.60 574 615 7.0E-16 T 13-10-2018 AP3564_02660 5c50d6fa91869ab6bdcbc23af8335ea3 616 Pfam PF01590 GAF domain 90 204 3.7E-5 T 13-10-2018 IPR003018 GAF domain GO:0005515 AP3564_02660 5c50d6fa91869ab6bdcbc23af8335ea3 616 Gene3D G3DSA:3.40.50.300 302 482 6.1E-60 T 13-10-2018 AP3564_12345 704de2c4120231bd64f882fa8157082e 621 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 169 250 1.3E-32 T 13-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 AP3564_12345 704de2c4120231bd64f882fa8157082e 621 Gene3D G3DSA:3.40.50.2300 154 267 7.7E-46 T 13-10-2018 AP3564_12345 704de2c4120231bd64f882fa8157082e 621 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 6 148 1.7E-41 T 13-10-2018 IPR002178 PTS EIIA type-2 domain AP3564_12345 704de2c4120231bd64f882fa8157082e 621 SUPERFAMILY SSF55804 1 148 1.31E-44 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 AP3564_12345 704de2c4120231bd64f882fa8157082e 621 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 52 68 - T 13-10-2018 IPR002178 PTS EIIA type-2 domain AP3564_12345 704de2c4120231bd64f882fa8157082e 621 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 169 258 8.0E-19 T 13-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AP3564_12345 704de2c4120231bd64f882fa8157082e 621 TIGRFAM TIGR00848 fruA: PTS system, fructose subfamily, IIA component 6 133 3.9E-41 T 13-10-2018 IPR004715 Phosphotransferase system, IIA component fructose subfamily GO:0008982|GO:0009401|GO:0016021 AP3564_12345 704de2c4120231bd64f882fa8157082e 621 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 278 616 2.4E-139 T 13-10-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 AP3564_12345 704de2c4120231bd64f882fa8157082e 621 Gene3D G3DSA:3.40.930.10 1 149 3.2E-49 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 AP3564_12345 704de2c4120231bd64f882fa8157082e 621 SUPERFAMILY SSF52794 166 268 3.84E-40 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 AP3564_12345 704de2c4120231bd64f882fa8157082e 621 Pfam PF02378 Phosphotransferase system, EIIC 293 562 1.4E-15 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AP3564_03715 864e21365211b2f40600524d260b79e3 709 SUPERFAMILY SSF51735 388 558 1.32E-42 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_03715 864e21365211b2f40600524d260b79e3 709 Gene3D G3DSA:3.40.50.720 162 290 1.0E-32 T 13-10-2018 AP3564_03715 864e21365211b2f40600524d260b79e3 709 Pfam PF00107 Zinc-binding dehydrogenase 179 297 6.8E-23 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AP3564_03715 864e21365211b2f40600524d260b79e3 709 Gene3D G3DSA:3.30.360.10 519 705 3.2E-20 T 13-10-2018 AP3564_03715 864e21365211b2f40600524d260b79e3 709 Gene3D G3DSA:3.90.180.10 1 161 4.5E-20 T 13-10-2018 AP3564_03715 864e21365211b2f40600524d260b79e3 709 SUPERFAMILY SSF50129 4 177 1.83E-21 T 13-10-2018 IPR011032 GroES-like superfamily AP3564_03715 864e21365211b2f40600524d260b79e3 709 SUPERFAMILY SSF51735 145 330 1.9E-30 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_03715 864e21365211b2f40600524d260b79e3 709 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 395 516 3.0E-24 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AP3564_03715 864e21365211b2f40600524d260b79e3 709 Gene3D G3DSA:3.40.50.720 390 518 2.1E-33 T 13-10-2018 AP3564_03715 864e21365211b2f40600524d260b79e3 709 SUPERFAMILY SSF55347 544 679 1.53E-11 T 13-10-2018 AP3564_03715 864e21365211b2f40600524d260b79e3 709 SMART SM00829 9 366 0.0042 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AP3564_01145 0a487caad60b82006cb1ca1fc9df0f6a 248 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_01145 0a487caad60b82006cb1ca1fc9df0f6a 248 SMART SM00382 26 226 9.3E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_01145 0a487caad60b82006cb1ca1fc9df0f6a 248 Pfam PF00005 ABC transporter 17 171 6.5E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_01145 0a487caad60b82006cb1ca1fc9df0f6a 248 PIRSF PIRSF039085 1 247 8.9E-116 T 13-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AP3564_01145 0a487caad60b82006cb1ca1fc9df0f6a 248 SUPERFAMILY SSF52540 1 241 6.41E-79 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_01145 0a487caad60b82006cb1ca1fc9df0f6a 248 Gene3D G3DSA:3.40.50.300 1 247 1.4E-78 T 13-10-2018 AP3564_15965 d27971aeafdea33aa46fcb039db5cdf6 703 Pfam PF03725 3' exoribonuclease family, domain 2 461 530 8.7E-8 T 13-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AP3564_15965 d27971aeafdea33aa46fcb039db5cdf6 703 Pfam PF03725 3' exoribonuclease family, domain 2 147 210 1.3E-16 T 13-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AP3564_15965 d27971aeafdea33aa46fcb039db5cdf6 703 Gene3D G3DSA:2.40.50.140 623 694 3.5E-27 T 13-10-2018 AP3564_15965 d27971aeafdea33aa46fcb039db5cdf6 703 SUPERFAMILY SSF55666 451 550 1.96E-29 T 13-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AP3564_15965 d27971aeafdea33aa46fcb039db5cdf6 703 SMART SM00316 621 691 4.6E-25 T 13-10-2018 IPR022967 RNA-binding domain, S1 AP3564_15965 d27971aeafdea33aa46fcb039db5cdf6 703 Pfam PF01138 3' exoribonuclease family, domain 1 324 457 1.2E-18 T 13-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AP3564_15965 d27971aeafdea33aa46fcb039db5cdf6 703 Pfam PF01138 3' exoribonuclease family, domain 1 15 144 2.5E-22 T 13-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AP3564_15965 d27971aeafdea33aa46fcb039db5cdf6 703 Pfam PF00575 S1 RNA binding domain 620 691 3.4E-19 T 13-10-2018 IPR003029 S1 domain GO:0003676 AP3564_15965 d27971aeafdea33aa46fcb039db5cdf6 703 SUPERFAMILY SSF54791 556 641 3.11E-23 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 AP3564_15965 d27971aeafdea33aa46fcb039db5cdf6 703 Gene3D G3DSA:3.30.1370.10 551 622 8.3E-19 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 AP3564_15965 d27971aeafdea33aa46fcb039db5cdf6 703 Pfam PF00013 KH domain 557 614 5.6E-9 T 13-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 AP3564_15965 d27971aeafdea33aa46fcb039db5cdf6 703 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 241 321 6.4E-18 T 13-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AP3564_15965 d27971aeafdea33aa46fcb039db5cdf6 703 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 4 694 31.601 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AP3564_15965 d27971aeafdea33aa46fcb039db5cdf6 703 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 12 693 0.0 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AP3564_15965 d27971aeafdea33aa46fcb039db5cdf6 703 Gene3D G3DSA:3.30.230.70 1 230 9.5E-88 T 13-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AP3564_15965 d27971aeafdea33aa46fcb039db5cdf6 703 SUPERFAMILY SSF54211 6 144 7.09E-52 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AP3564_15965 d27971aeafdea33aa46fcb039db5cdf6 703 PIRSF PIRSF005499 2 703 0.0 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AP3564_15965 d27971aeafdea33aa46fcb039db5cdf6 703 SUPERFAMILY SSF54211 292 488 8.1E-50 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AP3564_15965 d27971aeafdea33aa46fcb039db5cdf6 703 SMART SM00322 553 618 2.0E-11 T 13-10-2018 IPR004087 K Homology domain GO:0003676 AP3564_15965 d27971aeafdea33aa46fcb039db5cdf6 703 SUPERFAMILY SSF55666 145 235 4.06E-30 T 13-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AP3564_15965 d27971aeafdea33aa46fcb039db5cdf6 703 SUPERFAMILY SSF50249 621 700 3.57E-21 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_15965 d27971aeafdea33aa46fcb039db5cdf6 703 Gene3D G3DSA:3.30.230.70 235 550 3.5E-124 T 13-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AP3564_16670 41d70eb6b5dd3609a3d13e52a3165b4e 303 Gene3D G3DSA:3.30.465.10 89 216 1.5E-47 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AP3564_16670 41d70eb6b5dd3609a3d13e52a3165b4e 303 SUPERFAMILY SSF56194 196 301 2.49E-37 T 13-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AP3564_16670 41d70eb6b5dd3609a3d13e52a3165b4e 303 Gene3D G3DSA:3.90.78.10 217 303 5.5E-36 T 13-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AP3564_16670 41d70eb6b5dd3609a3d13e52a3165b4e 303 Gene3D G3DSA:3.30.43.10 1 88 3.4E-28 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 AP3564_16670 41d70eb6b5dd3609a3d13e52a3165b4e 303 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 22 300 5.4E-103 T 13-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AP3564_16670 41d70eb6b5dd3609a3d13e52a3165b4e 303 Pfam PF01565 FAD binding domain 35 165 9.0E-23 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AP3564_16670 41d70eb6b5dd3609a3d13e52a3165b4e 303 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 303 90.062 T 13-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AP3564_16670 41d70eb6b5dd3609a3d13e52a3165b4e 303 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 201 299 1.2E-29 T 13-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AP3564_16670 41d70eb6b5dd3609a3d13e52a3165b4e 303 SUPERFAMILY SSF56176 21 209 7.36E-43 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AP3564_05780 3ef351bc2b28e7c28e4de8486ba0942d 103 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 1 101 9.3E-43 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05780 3ef351bc2b28e7c28e4de8486ba0942d 103 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 38 100 1.5E-32 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05780 3ef351bc2b28e7c28e4de8486ba0942d 103 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 1 95 23.608 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05780 3ef351bc2b28e7c28e4de8486ba0942d 103 SMART SM00739 2 29 3.9E-7 T 13-10-2018 IPR005824 KOW AP3564_05780 3ef351bc2b28e7c28e4de8486ba0942d 103 ProSitePatterns PS01108 Ribosomal protein L24 signature. 6 23 - T 13-10-2018 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05780 3ef351bc2b28e7c28e4de8486ba0942d 103 SUPERFAMILY SSF50104 1 100 9.4E-41 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily AP3564_05780 3ef351bc2b28e7c28e4de8486ba0942d 103 Pfam PF00467 KOW motif 5 36 5.3E-10 T 13-10-2018 IPR005824 KOW AP3564_05780 3ef351bc2b28e7c28e4de8486ba0942d 103 Gene3D G3DSA:2.30.30.30 1 100 4.9E-44 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 AP3564_11535 0d63c6fd18b19c9334e4031e766d35f7 550 SUPERFAMILY SSF55073 125 275 2.98E-26 T 13-10-2018 IPR029787 Nucleotide cyclase AP3564_11535 0d63c6fd18b19c9334e4031e766d35f7 550 SUPERFAMILY SSF141868 292 542 1.57E-88 T 13-10-2018 IPR035919 EAL domain superfamily AP3564_11535 0d63c6fd18b19c9334e4031e766d35f7 550 Gene3D G3DSA:3.30.70.270 119 289 5.9E-29 T 13-10-2018 AP3564_11535 0d63c6fd18b19c9334e4031e766d35f7 550 SMART SM00052 287 533 1.3E-105 T 13-10-2018 IPR001633 EAL domain AP3564_11535 0d63c6fd18b19c9334e4031e766d35f7 550 Gene3D G3DSA:3.30.450.20 2 118 1.9E-6 T 13-10-2018 AP3564_11535 0d63c6fd18b19c9334e4031e766d35f7 550 SUPERFAMILY SSF55785 6 107 5.14E-7 T 13-10-2018 IPR035965 PAS domain superfamily AP3564_11535 0d63c6fd18b19c9334e4031e766d35f7 550 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 117 272 4.5E-17 T 13-10-2018 IPR000160 GGDEF domain AP3564_11535 0d63c6fd18b19c9334e4031e766d35f7 550 Gene3D G3DSA:3.20.20.450 290 549 1.1E-94 T 13-10-2018 IPR035919 EAL domain superfamily AP3564_11535 0d63c6fd18b19c9334e4031e766d35f7 550 Pfam PF00563 EAL domain 293 528 8.7E-73 T 13-10-2018 IPR001633 EAL domain AP3564_11535 0d63c6fd18b19c9334e4031e766d35f7 550 Pfam PF00990 Diguanylate cyclase, GGDEF domain 121 271 1.5E-25 T 13-10-2018 IPR000160 GGDEF domain AP3564_11535 0d63c6fd18b19c9334e4031e766d35f7 550 SMART SM00267 109 277 6.7E-16 T 13-10-2018 IPR000160 GGDEF domain AP3564_18795 b637f37b247aeb7ac3bcf445d77167a9 241 Gene3D G3DSA:3.30.70.980 133 205 4.3E-60 T 13-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_18795 b637f37b247aeb7ac3bcf445d77167a9 241 Gene3D G3DSA:1.10.10.200 1 81 1.3E-36 T 13-10-2018 IPR017856 Integrase-like, N-terminal AP3564_18795 b637f37b247aeb7ac3bcf445d77167a9 241 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 239 39.288 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_18795 b637f37b247aeb7ac3bcf445d77167a9 241 Gene3D G3DSA:3.30.70.980 84 236 4.3E-60 T 13-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_18795 b637f37b247aeb7ac3bcf445d77167a9 241 Pfam PF01709 Transcriptional regulator 5 237 7.8E-105 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_18795 b637f37b247aeb7ac3bcf445d77167a9 241 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 238 1.3E-112 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_18795 b637f37b247aeb7ac3bcf445d77167a9 241 SUPERFAMILY SSF75625 3 239 5.23E-103 T 13-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_09825 c69cefdbf03d5c78acec60ada3ceb863 828 TIGRFAM TIGR02785 addA_Gpos: helicase-exonuclease AddAB, AddA subunit 2 827 0.0 T 13-10-2018 IPR014152 DNA helicase subunit AddA GO:0004003|GO:0006302 AP3564_09825 c69cefdbf03d5c78acec60ada3ceb863 828 Pfam PF13361 UvrD-like helicase C-terminal domain 59 477 1.5E-34 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AP3564_09825 c69cefdbf03d5c78acec60ada3ceb863 828 SUPERFAMILY SSF52980 608 825 1.93E-40 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AP3564_09825 c69cefdbf03d5c78acec60ada3ceb863 828 Gene3D G3DSA:3.90.320.10 585 828 1.6E-83 T 13-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal AP3564_09825 c69cefdbf03d5c78acec60ada3ceb863 828 Pfam PF12705 PD-(D/E)XK nuclease superfamily 649 807 4.0E-9 T 13-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type AP3564_09825 c69cefdbf03d5c78acec60ada3ceb863 828 SUPERFAMILY SSF52540 2 92 4.25E-15 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_09825 c69cefdbf03d5c78acec60ada3ceb863 828 Pfam PF00580 UvrD/REP helicase N-terminal domain 2 48 5.9E-14 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 AP3564_09825 c69cefdbf03d5c78acec60ada3ceb863 828 Gene3D G3DSA:3.40.50.300 62 351 3.8E-59 T 13-10-2018 AP3564_09825 c69cefdbf03d5c78acec60ada3ceb863 828 Gene3D G3DSA:3.40.50.300 352 554 2.0E-50 T 13-10-2018 AP3564_09825 c69cefdbf03d5c78acec60ada3ceb863 828 Gene3D G3DSA:3.40.50.300 1 61 1.2E-11 T 13-10-2018 AP3564_09825 c69cefdbf03d5c78acec60ada3ceb863 828 SUPERFAMILY SSF52540 139 523 1.59E-84 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_08055 7a7aceb8ebcdb16c2f7e296a5c6f5588 689 SMART SM01007 20 219 2.6E-36 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal AP3564_08055 7a7aceb8ebcdb16c2f7e296a5c6f5588 689 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 647 667 1.9E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_08055 7a7aceb8ebcdb16c2f7e296a5c6f5588 689 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 600 617 1.9E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_08055 7a7aceb8ebcdb16c2f7e296a5c6f5588 689 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 505 516 1.9E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_08055 7a7aceb8ebcdb16c2f7e296a5c6f5588 689 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 429 446 1.9E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_08055 7a7aceb8ebcdb16c2f7e296a5c6f5588 689 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 579 598 1.9E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_08055 7a7aceb8ebcdb16c2f7e296a5c6f5588 689 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 20 218 1.8E-25 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal AP3564_08055 7a7aceb8ebcdb16c2f7e296a5c6f5588 689 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 435 683 1.2E-49 T 13-10-2018 AP3564_08055 7a7aceb8ebcdb16c2f7e296a5c6f5588 689 Gene3D G3DSA:3.40.225.10 17 225 1.2E-65 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily AP3564_08055 7a7aceb8ebcdb16c2f7e296a5c6f5588 689 Gene3D G3DSA:3.40.50.720 415 686 8.3E-69 T 13-10-2018 AP3564_08055 7a7aceb8ebcdb16c2f7e296a5c6f5588 689 TIGRFAM TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase 19 689 0.0 T 13-10-2018 IPR013454 Bifunctional rhamnulose-1-phosphate aldolase/alcohol dehydrogenase AP3564_08055 7a7aceb8ebcdb16c2f7e296a5c6f5588 689 SUPERFAMILY SSF53639 18 224 3.14E-36 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily AP3564_08055 7a7aceb8ebcdb16c2f7e296a5c6f5588 689 SUPERFAMILY SSF51735 419 686 7.73E-67 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_16585 fac3d39890e39b4cb2b71420c6060ee6 924 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 519 532 3.1E-32 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AP3564_16585 fac3d39890e39b4cb2b71420c6060ee6 924 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 391 406 3.1E-32 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AP3564_16585 fac3d39890e39b4cb2b71420c6060ee6 924 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 50 61 3.1E-32 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AP3564_16585 fac3d39890e39b4cb2b71420c6060ee6 924 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 229 252 3.1E-32 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AP3564_16585 fac3d39890e39b4cb2b71420c6060ee6 924 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 553 562 3.1E-32 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AP3564_16585 fac3d39890e39b4cb2b71420c6060ee6 924 SUPERFAMILY SSF50677 203 393 1.15E-64 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AP3564_16585 fac3d39890e39b4cb2b71420c6060ee6 924 Gene3D G3DSA:3.40.50.620 24 621 1.0E-265 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AP3564_16585 fac3d39890e39b4cb2b71420c6060ee6 924 SUPERFAMILY SSF52374 1 640 3.07E-153 T 13-10-2018 AP3564_16585 fac3d39890e39b4cb2b71420c6060ee6 924 Gene3D G3DSA:3.90.740.10 194 398 1.0E-265 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AP3564_16585 fac3d39890e39b4cb2b71420c6060ee6 924 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 57 68 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_16585 fac3d39890e39b4cb2b71420c6060ee6 924 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 1 917 21.272 T 13-10-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 AP3564_16585 fac3d39890e39b4cb2b71420c6060ee6 924 Gene3D G3DSA:1.10.730.20 632 919 3.5E-103 T 13-10-2018 AP3564_16585 fac3d39890e39b4cb2b71420c6060ee6 924 Pfam PF08264 Anticodon-binding domain of tRNA 677 829 1.4E-33 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 AP3564_16585 fac3d39890e39b4cb2b71420c6060ee6 924 Pfam PF06827 Zinc finger found in FPG and IleRS 886 914 8.7E-8 T 13-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 AP3564_16585 fac3d39890e39b4cb2b71420c6060ee6 924 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 14 831 0.0 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AP3564_16585 fac3d39890e39b4cb2b71420c6060ee6 924 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 27 633 2.9E-222 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_16585 fac3d39890e39b4cb2b71420c6060ee6 924 SUPERFAMILY SSF47323 644 917 7.1E-83 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_05340 029af23dbc4e3db83e492f873f7b6a3b 330 Gene3D G3DSA:3.20.20.70 7 251 1.4E-82 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_05340 029af23dbc4e3db83e492f873f7b6a3b 330 Gene3D G3DSA:1.10.1200.80 254 329 3.5E-22 T 13-10-2018 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 AP3564_05340 029af23dbc4e3db83e492f873f7b6a3b 330 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 96 114 - T 13-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 AP3564_05340 029af23dbc4e3db83e492f873f7b6a3b 330 Pfam PF01207 Dihydrouridine synthase (Dus) 14 319 2.1E-112 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AP3564_05340 029af23dbc4e3db83e492f873f7b6a3b 330 PIRSF PIRSF006621 1 330 1.2E-110 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AP3564_05340 029af23dbc4e3db83e492f873f7b6a3b 330 SUPERFAMILY SSF51395 11 322 1.76E-92 T 13-10-2018 AP3564_05340 029af23dbc4e3db83e492f873f7b6a3b 330 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 4 322 6.6E-141 T 13-10-2018 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 AP3564_05625 8f9543dcaca6435d08c12302af3d1e93 465 SUPERFAMILY SSF52374 3 314 4.83E-106 T 13-10-2018 AP3564_05625 8f9543dcaca6435d08c12302af3d1e93 465 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 222 243 5.6E-30 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AP3564_05625 8f9543dcaca6435d08c12302af3d1e93 465 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 26 37 5.6E-30 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AP3564_05625 8f9543dcaca6435d08c12302af3d1e93 465 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 191 209 5.6E-30 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AP3564_05625 8f9543dcaca6435d08c12302af3d1e93 465 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 62 71 5.6E-30 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AP3564_05625 8f9543dcaca6435d08c12302af3d1e93 465 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 3 465 39.962 T 13-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 AP3564_05625 8f9543dcaca6435d08c12302af3d1e93 465 Gene3D G3DSA:3.40.50.620 1 305 2.7E-139 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AP3564_05625 8f9543dcaca6435d08c12302af3d1e93 465 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 18 313 6.1E-140 T 13-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 AP3564_05625 8f9543dcaca6435d08c12302af3d1e93 465 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 3 464 1.6E-195 T 13-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 AP3564_05625 8f9543dcaca6435d08c12302af3d1e93 465 Gene3D G3DSA:1.20.120.1910 306 465 1.4E-37 T 13-10-2018 AP3564_05625 8f9543dcaca6435d08c12302af3d1e93 465 Pfam PF09190 DALR domain 353 410 3.0E-18 T 13-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 AP3564_05625 8f9543dcaca6435d08c12302af3d1e93 465 SMART SM00840 353 416 5.1E-19 T 13-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 AP3564_05625 8f9543dcaca6435d08c12302af3d1e93 465 SUPERFAMILY SSF47323 340 464 6.02E-36 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_19160 614aeac3f795ee3cab56e20b1e3382d5 326 PIRSF PIRSF000089 1 323 1.6E-112 T 13-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 AP3564_19160 614aeac3f795ee3cab56e20b1e3382d5 326 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 262 288 - T 13-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 AP3564_19160 614aeac3f795ee3cab56e20b1e3382d5 326 Pfam PF01012 Electron transfer flavoprotein domain 7 179 2.2E-40 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AP3564_19160 614aeac3f795ee3cab56e20b1e3382d5 326 SUPERFAMILY SSF52402 4 189 6.7E-48 T 13-10-2018 AP3564_19160 614aeac3f795ee3cab56e20b1e3382d5 326 SUPERFAMILY SSF52467 198 317 1.47E-48 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AP3564_19160 614aeac3f795ee3cab56e20b1e3382d5 326 Gene3D G3DSA:3.40.50.620 1 193 1.4E-53 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AP3564_19160 614aeac3f795ee3cab56e20b1e3382d5 326 Gene3D G3DSA:3.40.50.1220 194 326 4.3E-57 T 13-10-2018 AP3564_19160 614aeac3f795ee3cab56e20b1e3382d5 326 SMART SM00893 5 190 5.9E-47 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AP3564_19160 614aeac3f795ee3cab56e20b1e3382d5 326 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 198 281 2.7E-35 T 13-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 AP3564_00845 90402cbbccbab146eab8e7edf2c1555a 96 Gene3D G3DSA:1.10.20.60 1 94 1.7E-34 T 13-10-2018 AP3564_00845 90402cbbccbab146eab8e7edf2c1555a 96 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 20 91 1.9E-23 T 13-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 AP3564_00845 90402cbbccbab146eab8e7edf2c1555a 96 SUPERFAMILY SSF141000 3 94 4.32E-34 T 13-10-2018 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C GO:0006450 AP3564_00845 90402cbbccbab146eab8e7edf2c1555a 96 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 3 96 27.383 T 13-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 AP3564_00845 90402cbbccbab146eab8e7edf2c1555a 96 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 4 96 5.7E-35 T 13-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 AP3564_06370 acbca73b145e18fae4d5ba3a61e12bee 347 Gene3D G3DSA:3.40.50.2300 52 331 3.4E-105 T 13-10-2018 AP3564_06370 acbca73b145e18fae4d5ba3a61e12bee 347 Gene3D G3DSA:3.40.50.2300 152 347 3.4E-105 T 13-10-2018 AP3564_06370 acbca73b145e18fae4d5ba3a61e12bee 347 Pfam PF13407 Periplasmic binding protein domain 52 305 5.8E-58 T 13-10-2018 IPR025997 Periplasmic binding protein AP3564_06370 acbca73b145e18fae4d5ba3a61e12bee 347 SUPERFAMILY SSF53822 51 347 6.09E-65 T 13-10-2018 IPR028082 Periplasmic binding protein-like I AP3564_18225 c4dc0af03770d85239e0d9a7384736b8 404 ProSitePatterns PS00216 Sugar transport proteins signature 1. 60 76 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AP3564_18225 c4dc0af03770d85239e0d9a7384736b8 404 SUPERFAMILY SSF103473 5 389 1.31E-56 T 13-10-2018 IPR036259 MFS transporter superfamily AP3564_18225 c4dc0af03770d85239e0d9a7384736b8 404 PRINTS PR01035 Tetracycline resistance protein signature 16 32 4.0E-6 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AP3564_18225 c4dc0af03770d85239e0d9a7384736b8 404 PRINTS PR01035 Tetracycline resistance protein signature 137 159 4.0E-6 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AP3564_18225 c4dc0af03770d85239e0d9a7384736b8 404 PRINTS PR01035 Tetracycline resistance protein signature 165 185 4.0E-6 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AP3564_18225 c4dc0af03770d85239e0d9a7384736b8 404 PRINTS PR01035 Tetracycline resistance protein signature 336 359 4.0E-6 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AP3564_18225 c4dc0af03770d85239e0d9a7384736b8 404 Pfam PF07690 Major Facilitator Superfamily 15 356 6.2E-47 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AP3564_18225 c4dc0af03770d85239e0d9a7384736b8 404 Gene3D G3DSA:1.20.1250.20 2 389 5.0E-57 T 13-10-2018 AP3564_05270 e3d7ce29f7ac03116aa7a651ab596c88 459 Pfam PF01171 PP-loop family 21 204 2.2E-58 T 13-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 AP3564_05270 e3d7ce29f7ac03116aa7a651ab596c88 459 Gene3D G3DSA:3.40.50.620 1 129 8.7E-41 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AP3564_05270 e3d7ce29f7ac03116aa7a651ab596c88 459 SUPERFAMILY SSF56037 333 440 1.96E-18 T 13-10-2018 AP3564_05270 e3d7ce29f7ac03116aa7a651ab596c88 459 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 12 317 24.044 T 13-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AP3564_05270 e3d7ce29f7ac03116aa7a651ab596c88 459 SUPERFAMILY SSF82829 217 321 1.57E-11 T 13-10-2018 AP3564_05270 e3d7ce29f7ac03116aa7a651ab596c88 459 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 381 427 3.3E-21 T 13-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AP3564_05270 e3d7ce29f7ac03116aa7a651ab596c88 459 Gene3D G3DSA:1.10.10.1360 130 216 2.5E-28 T 13-10-2018 AP3564_05270 e3d7ce29f7ac03116aa7a651ab596c88 459 SMART SM00977 381 454 2.8E-22 T 13-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AP3564_05270 e3d7ce29f7ac03116aa7a651ab596c88 459 SUPERFAMILY SSF52402 8 238 5.1E-60 T 13-10-2018 AP3564_05270 e3d7ce29f7ac03116aa7a651ab596c88 459 Gene3D G3DSA:1.20.59.30 246 329 1.6E-22 T 13-10-2018 AP3564_05270 e3d7ce29f7ac03116aa7a651ab596c88 459 Pfam PF11734 TilS substrate C-terminal domain 382 439 4.2E-13 T 13-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AP3564_05270 e3d7ce29f7ac03116aa7a651ab596c88 459 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 21 208 3.8E-61 T 13-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AP3564_07365 f6e915eca8ddc9eb2521f40fe5dee53a 421 Gene3D G3DSA:2.170.190.11 52 151 1.1E-121 T 13-10-2018 AP3564_07365 f6e915eca8ddc9eb2521f40fe5dee53a 421 SUPERFAMILY SSF63867 338 414 4.32E-11 T 13-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AP3564_07365 f6e915eca8ddc9eb2521f40fe5dee53a 421 Gene3D G3DSA:3.40.980.10 185 337 1.1E-121 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily AP3564_07365 f6e915eca8ddc9eb2521f40fe5dee53a 421 Gene3D G3DSA:3.90.105.10 30 184 1.1E-121 T 13-10-2018 AP3564_07365 f6e915eca8ddc9eb2521f40fe5dee53a 421 SUPERFAMILY SSF63882 9 186 4.58E-53 T 13-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AP3564_07365 f6e915eca8ddc9eb2521f40fe5dee53a 421 SMART SM00852 190 328 2.5E-33 T 13-10-2018 IPR001453 MoaB/Mog domain AP3564_07365 f6e915eca8ddc9eb2521f40fe5dee53a 421 Pfam PF03454 MoeA C-terminal region (domain IV) 356 413 1.7E-8 T 13-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AP3564_07365 f6e915eca8ddc9eb2521f40fe5dee53a 421 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 186 323 6.6E-30 T 13-10-2018 IPR001453 MoaB/Mog domain AP3564_07365 f6e915eca8ddc9eb2521f40fe5dee53a 421 Gene3D G3DSA:2.40.340.10 338 406 1.1E-121 T 13-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AP3564_07365 f6e915eca8ddc9eb2521f40fe5dee53a 421 Pfam PF03453 MoeA N-terminal region (domain I and II) 11 177 1.6E-42 T 13-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AP3564_07365 f6e915eca8ddc9eb2521f40fe5dee53a 421 Pfam PF00994 Probable molybdopterin binding domain 190 327 2.6E-22 T 13-10-2018 IPR001453 MoaB/Mog domain AP3564_07365 f6e915eca8ddc9eb2521f40fe5dee53a 421 SUPERFAMILY SSF53218 187 331 1.03E-36 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily AP3564_12610 42dc70cf334a842335006eab299b927b 79 SMART SM00530 12 67 1.0E-12 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AP3564_12610 42dc70cf334a842335006eab299b927b 79 Gene3D G3DSA:1.10.260.40 8 72 1.4E-23 T 13-10-2018 AP3564_12610 42dc70cf334a842335006eab299b927b 79 SUPERFAMILY SSF47413 8 73 6.7E-18 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AP3564_12610 42dc70cf334a842335006eab299b927b 79 Pfam PF01381 Helix-turn-helix 14 66 4.0E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AP3564_19070 6ed064bafbae43a2626e8c39fc6d4f52 341 SUPERFAMILY SSF51735 3 182 2.95E-73 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_19070 6ed064bafbae43a2626e8c39fc6d4f52 341 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 183 325 1.9E-66 T 13-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AP3564_19070 6ed064bafbae43a2626e8c39fc6d4f52 341 SUPERFAMILY SSF48179 183 328 3.23E-71 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AP3564_19070 6ed064bafbae43a2626e8c39fc6d4f52 341 Gene3D G3DSA:1.10.3730.40 182 341 4.8E-70 T 13-10-2018 AP3564_19070 6ed064bafbae43a2626e8c39fc6d4f52 341 PIRSF PIRSF000116 1 206 7.3E-45 T 13-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AP3564_19070 6ed064bafbae43a2626e8c39fc6d4f52 341 PIRSF PIRSF000116 202 332 3.4E-16 T 13-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AP3564_19070 6ed064bafbae43a2626e8c39fc6d4f52 341 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 2 328 45.865 T 13-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AP3564_19070 6ed064bafbae43a2626e8c39fc6d4f52 341 Gene3D G3DSA:3.40.50.720 1 181 1.9E-78 T 13-10-2018 AP3564_19070 6ed064bafbae43a2626e8c39fc6d4f52 341 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 15 327 5.2E-147 T 13-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AP3564_19070 6ed064bafbae43a2626e8c39fc6d4f52 341 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 14 177 1.4E-77 T 13-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AP3564_03275 17a4984deb40adca00e5c8cbde48a242 213 SMART SM00116 82 129 2.5E-13 T 13-10-2018 IPR000644 CBS domain AP3564_03275 17a4984deb40adca00e5c8cbde48a242 213 SMART SM00116 10 58 2.8E-9 T 13-10-2018 IPR000644 CBS domain AP3564_03275 17a4984deb40adca00e5c8cbde48a242 213 SUPERFAMILY SSF55021 138 207 1.99E-9 T 13-10-2018 AP3564_03275 17a4984deb40adca00e5c8cbde48a242 213 Gene3D G3DSA:3.30.70.260 134 206 2.1E-6 T 13-10-2018 AP3564_03275 17a4984deb40adca00e5c8cbde48a242 213 SUPERFAMILY SSF54631 1 130 6.57E-33 T 13-10-2018 AP3564_03275 17a4984deb40adca00e5c8cbde48a242 213 Gene3D G3DSA:3.10.580.10 1 133 2.1E-36 T 13-10-2018 AP3564_03275 17a4984deb40adca00e5c8cbde48a242 213 Pfam PF00571 CBS domain 4 56 4.9E-13 T 13-10-2018 IPR000644 CBS domain AP3564_03275 17a4984deb40adca00e5c8cbde48a242 213 Pfam PF00571 CBS domain 75 126 1.3E-10 T 13-10-2018 IPR000644 CBS domain AP3564_04360 7dcaa29e87b80dfc8546be5ed1eb9f31 402 Gene3D G3DSA:3.40.50.2300 42 372 6.1E-113 T 13-10-2018 AP3564_04360 7dcaa29e87b80dfc8546be5ed1eb9f31 402 SUPERFAMILY SSF53822 41 390 6.83E-95 T 13-10-2018 IPR028082 Periplasmic binding protein-like I AP3564_04360 7dcaa29e87b80dfc8546be5ed1eb9f31 402 Gene3D G3DSA:3.40.50.2300 159 380 6.1E-113 T 13-10-2018 AP3564_04360 7dcaa29e87b80dfc8546be5ed1eb9f31 402 Pfam PF13458 Periplasmic binding protein 41 383 2.8E-83 T 13-10-2018 IPR028081 Leucine-binding protein domain AP3564_12900 b9432201def45bf110a60ef121b2e66a 64 Pfam PF17431 Uncharacterized ympT 1 63 2.0E-21 T 13-10-2018 IPR035403 Uncharacterized protein YmpT AP3564_12900 b9432201def45bf110a60ef121b2e66a 64 ProDom PD054146 YPMT TRANSMEMBRANE MEMBRANE 1 63 3.0E-9 T 13-10-2018 IPR035403 Uncharacterized protein YmpT AP3564_16990 6c53704b07fc8545341c53455b686906 167 SUPERFAMILY SSF54403 33 95 8.67E-9 T 13-10-2018 AP3564_16990 6c53704b07fc8545341c53455b686906 167 SUPERFAMILY SSF54403 95 164 8.42E-9 T 13-10-2018 AP3564_16990 6c53704b07fc8545341c53455b686906 167 Gene3D G3DSA:3.10.450.40 95 164 2.8E-11 T 13-10-2018 AP3564_16990 6c53704b07fc8545341c53455b686906 167 Gene3D G3DSA:3.10.450.40 24 94 1.1E-21 T 13-10-2018 AP3564_01420 26027e6b9b19adff85e7a89a96e5abb7 437 Gene3D G3DSA:3.40.190.10 166 428 1.8E-86 T 13-10-2018 AP3564_01420 26027e6b9b19adff85e7a89a96e5abb7 437 SUPERFAMILY SSF53850 44 433 1.74E-72 T 13-10-2018 AP3564_01420 26027e6b9b19adff85e7a89a96e5abb7 437 Gene3D G3DSA:3.40.190.10 46 393 1.8E-86 T 13-10-2018 AP3564_01420 26027e6b9b19adff85e7a89a96e5abb7 437 Pfam PF13416 Bacterial extracellular solute-binding protein 61 367 5.2E-45 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein AP3564_17155 efa3c39f3d0cc5d69cf11e3fb4b99a11 255 Gene3D G3DSA:3.20.20.70 1 255 7.3E-90 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_17155 efa3c39f3d0cc5d69cf11e3fb4b99a11 255 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 44 62 - T 13-10-2018 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 AP3564_17155 efa3c39f3d0cc5d69cf11e3fb4b99a11 255 SUPERFAMILY SSF51366 14 251 3.06E-82 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AP3564_17155 efa3c39f3d0cc5d69cf11e3fb4b99a11 255 Pfam PF00218 Indole-3-glycerol phosphate synthase 6 249 8.5E-87 T 13-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 AP3564_17155 efa3c39f3d0cc5d69cf11e3fb4b99a11 255 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 3 251 32.328 T 13-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 AP3564_04870 94cb086301d9ae9bbe5a5741b10967c5 378 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 377 4.2E-122 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 AP3564_04870 94cb086301d9ae9bbe5a5741b10967c5 378 SUPERFAMILY SSF55979 1 127 1.34E-23 T 13-10-2018 AP3564_04870 94cb086301d9ae9bbe5a5741b10967c5 378 PIRSF PIRSF000804 1 378 1.1E-116 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 AP3564_04870 94cb086301d9ae9bbe5a5741b10967c5 378 SUPERFAMILY SSF55979 133 251 6.28E-29 T 13-10-2018 AP3564_04870 94cb086301d9ae9bbe5a5741b10967c5 378 SUPERFAMILY SSF55979 254 377 2.93E-30 T 13-10-2018 AP3564_04870 94cb086301d9ae9bbe5a5741b10967c5 378 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 127 6.9E-38 T 13-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 AP3564_04870 94cb086301d9ae9bbe5a5741b10967c5 378 Pfam PF02767 DNA polymerase III beta subunit, central domain 137 251 5.1E-39 T 13-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 AP3564_04870 94cb086301d9ae9bbe5a5741b10967c5 378 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 254 376 8.8E-36 T 13-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 AP3564_04870 94cb086301d9ae9bbe5a5741b10967c5 378 Gene3D G3DSA:3.10.150.10 1 250 2.6E-136 T 13-10-2018 AP3564_04870 94cb086301d9ae9bbe5a5741b10967c5 378 SMART SM00480 17 373 6.0E-168 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 AP3564_04870 94cb086301d9ae9bbe5a5741b10967c5 378 Gene3D G3DSA:3.70.10.10 145 375 2.6E-136 T 13-10-2018 AP3564_05695 f47a1cef59d7362962491046b7ddf59b 82 SUPERFAMILY SSF55315 5 81 1.24E-21 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like AP3564_05695 f47a1cef59d7362962491046b7ddf59b 82 Hamap MF_00574 Putative ribosomal protein L7Ae-like. 2 82 24.308 T 13-10-2018 IPR023460 Ribosomal protein L7Ae, putative AP3564_05695 f47a1cef59d7362962491046b7ddf59b 82 PRINTS PR00884 Ribosomal protein HS6 signature 30 41 1.7E-5 T 13-10-2018 IPR000948 Ribosomal protein L7Ae, prokaryotes GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05695 f47a1cef59d7362962491046b7ddf59b 82 PRINTS PR00884 Ribosomal protein HS6 signature 56 66 1.7E-5 T 13-10-2018 IPR000948 Ribosomal protein L7Ae, prokaryotes GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05695 f47a1cef59d7362962491046b7ddf59b 82 PRINTS PR00884 Ribosomal protein HS6 signature 70 82 1.7E-5 T 13-10-2018 IPR000948 Ribosomal protein L7Ae, prokaryotes GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05695 f47a1cef59d7362962491046b7ddf59b 82 Pfam PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 5 81 3.0E-18 T 13-10-2018 IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 AP3564_05695 f47a1cef59d7362962491046b7ddf59b 82 Gene3D G3DSA:3.30.1330.30 1 81 4.4E-26 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like AP3564_06755 d2a0b7507039f37c8dc46ae489978a0a 365 SUPERFAMILY SSF56059 139 354 3.71E-63 T 13-10-2018 AP3564_06755 d2a0b7507039f37c8dc46ae489978a0a 365 Gene3D G3DSA:3.30.1490.20 154 226 3.2E-30 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AP3564_06755 d2a0b7507039f37c8dc46ae489978a0a 365 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 3 352 41.894 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AP3564_06755 d2a0b7507039f37c8dc46ae489978a0a 365 Gene3D G3DSA:3.40.50.20 1 149 9.0E-37 T 13-10-2018 AP3564_06755 d2a0b7507039f37c8dc46ae489978a0a 365 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 106 117 - T 13-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AP3564_06755 d2a0b7507039f37c8dc46ae489978a0a 365 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 294 322 - T 13-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AP3564_06755 d2a0b7507039f37c8dc46ae489978a0a 365 Pfam PF07478 D-ala D-ala ligase C-terminus 146 349 2.0E-81 T 13-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AP3564_06755 d2a0b7507039f37c8dc46ae489978a0a 365 Gene3D G3DSA:3.30.470.20 227 365 1.3E-53 T 13-10-2018 AP3564_06755 d2a0b7507039f37c8dc46ae489978a0a 365 Pfam PF01820 D-ala D-ala ligase N-terminus 4 128 3.6E-31 T 13-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AP3564_06755 d2a0b7507039f37c8dc46ae489978a0a 365 PIRSF PIRSF039102 1 360 1.0E-115 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AP3564_06755 d2a0b7507039f37c8dc46ae489978a0a 365 SUPERFAMILY SSF52440 2 138 1.44E-34 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AP3564_06755 d2a0b7507039f37c8dc46ae489978a0a 365 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 4 349 9.9E-117 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AP3564_13235 336bb4f4c43e40246aaaf3998c47acc5 409 Pfam PF01548 Transposase 5 164 4.6E-31 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_13235 336bb4f4c43e40246aaaf3998c47acc5 409 Pfam PF02371 Transposase IS116/IS110/IS902 family 280 365 1.3E-27 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_18085 336bb4f4c43e40246aaaf3998c47acc5 409 Pfam PF01548 Transposase 5 164 4.6E-31 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_18085 336bb4f4c43e40246aaaf3998c47acc5 409 Pfam PF02371 Transposase IS116/IS110/IS902 family 280 365 1.3E-27 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_09580 336bb4f4c43e40246aaaf3998c47acc5 409 Pfam PF01548 Transposase 5 164 4.6E-31 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_09580 336bb4f4c43e40246aaaf3998c47acc5 409 Pfam PF02371 Transposase IS116/IS110/IS902 family 280 365 1.3E-27 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_12845 b367ddb67188189afb51dc86cfa891fb 282 SUPERFAMILY SSF82549 4 281 3.66E-87 T 13-10-2018 AP3564_12845 b367ddb67188189afb51dc86cfa891fb 282 Pfam PF02645 Uncharacterised protein, DegV family COG1307 4 280 1.2E-86 T 13-10-2018 IPR003797 DegV AP3564_12845 b367ddb67188189afb51dc86cfa891fb 282 TIGRFAM TIGR00762 DegV: EDD domain protein, DegV family 5 279 1.3E-98 T 13-10-2018 IPR003797 DegV AP3564_12845 b367ddb67188189afb51dc86cfa891fb 282 Gene3D G3DSA:3.40.50.10170 1 153 1.8E-53 T 13-10-2018 AP3564_12845 b367ddb67188189afb51dc86cfa891fb 282 Gene3D G3DSA:3.30.1180.10 154 281 2.8E-36 T 13-10-2018 AP3564_12100 845d6918c0bd6150a6af6379156daa0e 269 Pfam PF01774 UreD urease accessory protein 42 243 3.9E-44 T 13-10-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 AP3564_12100 845d6918c0bd6150a6af6379156daa0e 269 Hamap MF_01384 Urease accessory protein UreD [ureD]. 1 255 23.682 T 13-10-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 AP3564_18780 0e1de51597b8441a8bdad3825d286a60 333 SUPERFAMILY SSF52540 21 253 5.75E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_18780 0e1de51597b8441a8bdad3825d286a60 333 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 252 332 3.0E-35 T 13-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 AP3564_18780 0e1de51597b8441a8bdad3825d286a60 333 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 5 234 5.9E-119 T 13-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 AP3564_18780 0e1de51597b8441a8bdad3825d286a60 333 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 25 328 1.2E-149 T 13-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 AP3564_18780 0e1de51597b8441a8bdad3825d286a60 333 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 333 169.451 T 13-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 AP3564_18780 0e1de51597b8441a8bdad3825d286a60 333 Gene3D G3DSA:1.10.8.60 183 257 1.4E-31 T 13-10-2018 AP3564_18780 0e1de51597b8441a8bdad3825d286a60 333 Gene3D G3DSA:3.40.50.300 21 182 1.4E-40 T 13-10-2018 AP3564_18780 0e1de51597b8441a8bdad3825d286a60 333 SMART SM00382 52 183 1.1E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_18780 0e1de51597b8441a8bdad3825d286a60 333 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 254 327 2.0E-33 T 13-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 AP3564_18780 0e1de51597b8441a8bdad3825d286a60 333 SUPERFAMILY SSF46785 257 331 1.36E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_18780 0e1de51597b8441a8bdad3825d286a60 333 Gene3D G3DSA:1.10.10.10 258 333 7.5E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_12570 af97a532c08d5ccf2c1712108f1f0cd2 256 SUPERFAMILY SSF56784 1 253 1.68E-66 T 13-10-2018 IPR036412 HAD-like superfamily AP3564_12570 af97a532c08d5ccf2c1712108f1f0cd2 256 ProSitePatterns PS01229 Hypothetical cof family signature 2. 204 226 - T 13-10-2018 AP3564_12570 af97a532c08d5ccf2c1712108f1f0cd2 256 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 6 223 1.7E-25 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 AP3564_12570 af97a532c08d5ccf2c1712108f1f0cd2 256 Gene3D G3DSA:3.40.50.1000 4 246 3.0E-82 T 13-10-2018 IPR023214 HAD superfamily AP3564_12570 af97a532c08d5ccf2c1712108f1f0cd2 256 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 6 248 3.5E-62 T 13-10-2018 IPR000150 Cof family GO:0016787 AP3564_12570 af97a532c08d5ccf2c1712108f1f0cd2 256 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 248 4.9E-60 T 13-10-2018 AP3564_12570 af97a532c08d5ccf2c1712108f1f0cd2 256 Gene3D G3DSA:3.30.1240.10 81 179 3.0E-82 T 13-10-2018 AP3564_07915 64c4a036482083522b3df930effd584c 1212 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 448 765 1.5E-84 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B AP3564_07915 64c4a036482083522b3df930effd584c 1212 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 317 2.0E-66 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AP3564_07915 64c4a036482083522b3df930effd584c 1212 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 803 1024 2.7E-45 T 13-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D AP3564_07915 64c4a036482083522b3df930effd584c 1212 Gene3D G3DSA:3.30.1360.40 787 880 4.6E-21 T 13-10-2018 AP3564_07915 64c4a036482083522b3df930effd584c 1212 SUPERFAMILY SSF52440 1 112 1.15E-46 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AP3564_07915 64c4a036482083522b3df930effd584c 1212 Gene3D G3DSA:2.40.50.100 1134 1201 3.7E-22 T 13-10-2018 AP3564_07915 64c4a036482083522b3df930effd584c 1212 SUPERFAMILY SSF56059 83 322 2.65E-65 T 13-10-2018 AP3564_07915 64c4a036482083522b3df930effd584c 1212 SUPERFAMILY SSF50891 919 1051 2.2E-26 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily AP3564_07915 64c4a036482083522b3df930effd584c 1212 Gene3D G3DSA:3.30.470.130 1 445 2.3E-182 T 13-10-2018 AP3564_07915 64c4a036482083522b3df930effd584c 1212 SMART SM00796 802 1035 4.7E-104 T 13-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D AP3564_07915 64c4a036482083522b3df930effd584c 1212 TIGRFAM TIGR02712 urea_carbox: urea carboxylase 2 1201 0.0 T 13-10-2018 IPR014084 Urea carboxylase KEGG: 00220+3.5.1.54+6.3.4.6|KEGG: 00791+3.5.1.54+6.3.4.6|MetaCyc: PWY-5169|MetaCyc: PWY-5703 AP3564_07915 64c4a036482083522b3df930effd584c 1212 SUPERFAMILY SSF51246 330 442 1.67E-33 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AP3564_07915 64c4a036482083522b3df930effd584c 1212 Gene3D G3DSA:2.40.100.10 885 1109 9.9E-97 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily AP3564_07915 64c4a036482083522b3df930effd584c 1212 Pfam PF02785 Biotin carboxylase C-terminal domain 336 440 5.7E-31 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AP3564_07915 64c4a036482083522b3df930effd584c 1212 Gene3D G3DSA:2.40.100.10 623 778 1.7E-54 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily AP3564_07915 64c4a036482083522b3df930effd584c 1212 SUPERFAMILY SSF50891 624 750 5.31E-29 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily AP3564_07915 64c4a036482083522b3df930effd584c 1212 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 152 166 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AP3564_07915 64c4a036482083522b3df930effd584c 1212 Pfam PF00364 Biotin-requiring enzyme 1136 1201 1.1E-13 T 13-10-2018 IPR000089 Biotin/lipoyl attachment AP3564_07915 64c4a036482083522b3df930effd584c 1212 SMART SM00878 336 440 2.7E-41 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AP3564_07915 64c4a036482083522b3df930effd584c 1212 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 3.0E-44 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AP3564_07915 64c4a036482083522b3df930effd584c 1212 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 472 743 1.5E-83 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B AP3564_07915 64c4a036482083522b3df930effd584c 1212 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AP3564_07915 64c4a036482083522b3df930effd584c 1212 SUPERFAMILY SSF160467 803 895 1.83E-14 T 13-10-2018 AP3564_07915 64c4a036482083522b3df930effd584c 1212 SMART SM00797 471 760 4.0E-153 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B AP3564_07915 64c4a036482083522b3df930effd584c 1212 SUPERFAMILY SSF51230 1127 1201 1.19E-19 T 13-10-2018 IPR011053 Single hybrid motif AP3564_17675 9277ba7fb8d5d5a72563dff023ccc3a0 491 PIRSF PIRSF000110 1 491 9.6E-194 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AP3564_17675 9277ba7fb8d5d5a72563dff023ccc3a0 491 Gene3D G3DSA:3.40.50.720 6 178 6.8E-63 T 13-10-2018 AP3564_17675 9277ba7fb8d5d5a72563dff023ccc3a0 491 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 193 488 1.3E-116 T 13-10-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AP3564_17675 9277ba7fb8d5d5a72563dff023ccc3a0 491 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 8 490 88.458 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AP3564_17675 9277ba7fb8d5d5a72563dff023ccc3a0 491 SUPERFAMILY SSF55347 185 489 1.28E-117 T 13-10-2018 AP3564_17675 9277ba7fb8d5d5a72563dff023ccc3a0 491 Gene3D G3DSA:3.30.360.10 179 490 3.2E-126 T 13-10-2018 AP3564_17675 9277ba7fb8d5d5a72563dff023ccc3a0 491 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 8 489 1.3E-206 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AP3564_17675 9277ba7fb8d5d5a72563dff023ccc3a0 491 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 180 186 - T 13-10-2018 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AP3564_17675 9277ba7fb8d5d5a72563dff023ccc3a0 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 146 159 7.5E-48 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AP3564_17675 9277ba7fb8d5d5a72563dff023ccc3a0 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 331 357 7.5E-48 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AP3564_17675 9277ba7fb8d5d5a72563dff023ccc3a0 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 240 256 7.5E-48 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AP3564_17675 9277ba7fb8d5d5a72563dff023ccc3a0 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 222 239 7.5E-48 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AP3564_17675 9277ba7fb8d5d5a72563dff023ccc3a0 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 170 198 7.5E-48 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AP3564_17675 9277ba7fb8d5d5a72563dff023ccc3a0 491 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 12 190 1.0E-64 T 13-10-2018 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AP3564_17675 9277ba7fb8d5d5a72563dff023ccc3a0 491 SUPERFAMILY SSF51735 5 193 1.56E-62 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_13835 9f482e35e1a9b93b977c575e6f710817 787 Gene3D G3DSA:2.60.40.1760 28 252 2.4E-59 T 13-10-2018 AP3564_13835 9f482e35e1a9b93b977c575e6f710817 787 Gene3D G3DSA:2.60.40.1180 671 787 4.1E-16 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta AP3564_13835 9f482e35e1a9b93b977c575e6f710817 787 Pfam PF17137 Domain of unknown function (DUF5110) 690 750 5.3E-13 T 13-10-2018 IPR033403 Domain of unknown function DUF5110 AP3564_13835 9f482e35e1a9b93b977c575e6f710817 787 ProSitePatterns PS00707 Glycosyl hydrolases family 31 signature 2. 511 541 - T 13-10-2018 IPR030459 Glycosyl hydrolases family 31, conserved site AP3564_13835 9f482e35e1a9b93b977c575e6f710817 787 SUPERFAMILY SSF74650 11 240 1.88E-59 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 AP3564_13835 9f482e35e1a9b93b977c575e6f710817 787 SUPERFAMILY SSF51445 241 588 3.51E-102 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily AP3564_13835 9f482e35e1a9b93b977c575e6f710817 787 ProSitePatterns PS00129 Glycosyl hydrolases family 31 active site. 403 410 - T 13-10-2018 IPR030458 Glycosyl hydrolases family 31, active site AP3564_13835 9f482e35e1a9b93b977c575e6f710817 787 SUPERFAMILY SSF51011 590 669 2.09E-24 T 13-10-2018 AP3564_13835 9f482e35e1a9b93b977c575e6f710817 787 Gene3D G3DSA:2.60.40.1180 599 670 1.7E-24 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta AP3564_13835 9f482e35e1a9b93b977c575e6f710817 787 Pfam PF13802 Galactose mutarotase-like 147 213 2.5E-25 T 13-10-2018 IPR025887 Glycoside hydrolase family 31, N-terminal domain AP3564_13835 9f482e35e1a9b93b977c575e6f710817 787 Gene3D G3DSA:3.20.20.80 254 420 3.1E-71 T 13-10-2018 AP3564_13835 9f482e35e1a9b93b977c575e6f710817 787 Gene3D G3DSA:3.20.20.80 421 598 1.2E-74 T 13-10-2018 AP3564_13835 9f482e35e1a9b93b977c575e6f710817 787 Pfam PF01055 Glycosyl hydrolases family 31 233 674 9.0E-167 T 13-10-2018 IPR000322 Glycoside hydrolase family 31 GO:0004553|GO:0005975 AP3564_13835 9f482e35e1a9b93b977c575e6f710817 787 Pfam PF16338 Domain of unknown function (DUF4968) 34 124 2.3E-21 T 13-10-2018 IPR032513 Alpha-glucosidase, domain of unknown function DUF4968 AP3564_05755 d7123fe7f92a1606da08d9b594652326 218 Pfam PF00189 Ribosomal protein S3, C-terminal domain 119 201 4.0E-39 T 13-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05755 d7123fe7f92a1606da08d9b594652326 218 Gene3D G3DSA:3.30.300.20 17 106 6.7E-33 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta AP3564_05755 d7123fe7f92a1606da08d9b594652326 218 SUPERFAMILY SSF54821 107 205 1.44E-37 T 13-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05755 d7123fe7f92a1606da08d9b594652326 218 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 205 38.2 T 13-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 AP3564_05755 d7123fe7f92a1606da08d9b594652326 218 SUPERFAMILY SSF54814 2 105 8.11E-40 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 AP3564_05755 d7123fe7f92a1606da08d9b594652326 218 ProSitePatterns PS00548 Ribosomal protein S3 signature. 162 196 - T 13-10-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05755 d7123fe7f92a1606da08d9b594652326 218 SMART SM00322 59 124 1.0E-7 T 13-10-2018 IPR004087 K Homology domain GO:0003676 AP3564_05755 d7123fe7f92a1606da08d9b594652326 218 Pfam PF07650 KH domain 37 109 4.1E-21 T 13-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05755 d7123fe7f92a1606da08d9b594652326 218 Gene3D G3DSA:3.30.1140.32 107 207 1.5E-39 T 13-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05755 d7123fe7f92a1606da08d9b594652326 218 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 208 3.1E-95 T 13-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 AP3564_00485 5f1cde561e5567802256030cdb0a1b03 323 Pfam PF00753 Metallo-beta-lactamase superfamily 22 235 1.4E-18 T 13-10-2018 IPR001279 Metallo-beta-lactamase AP3564_00485 5f1cde561e5567802256030cdb0a1b03 323 Gene3D G3DSA:3.60.15.10 7 263 9.4E-48 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AP3564_00485 5f1cde561e5567802256030cdb0a1b03 323 SUPERFAMILY SSF56281 11 308 6.03E-42 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AP3564_00485 5f1cde561e5567802256030cdb0a1b03 323 SMART SM00849 23 235 1.1E-20 T 13-10-2018 IPR001279 Metallo-beta-lactamase AP3564_02110 a6764513f7af1dc0458e46a08b473e5e 350 Pfam PF00107 Zinc-binding dehydrogenase 183 308 2.2E-31 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AP3564_02110 a6764513f7af1dc0458e46a08b473e5e 350 SMART SM00829 7 347 7.6E-6 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AP3564_02110 a6764513f7af1dc0458e46a08b473e5e 350 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 143 2.9E-35 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AP3564_02110 a6764513f7af1dc0458e46a08b473e5e 350 SUPERFAMILY SSF50129 1 182 5.17E-57 T 13-10-2018 IPR011032 GroES-like superfamily AP3564_02110 a6764513f7af1dc0458e46a08b473e5e 350 SUPERFAMILY SSF51735 146 313 3.55E-42 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_02110 a6764513f7af1dc0458e46a08b473e5e 350 Gene3D G3DSA:3.90.180.10 10 335 3.2E-112 T 13-10-2018 AP3564_02110 a6764513f7af1dc0458e46a08b473e5e 350 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 69 83 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AP3564_02110 a6764513f7af1dc0458e46a08b473e5e 350 Gene3D G3DSA:3.40.50.720 160 295 3.2E-112 T 13-10-2018 AP3564_05790 38415ef21f69fdf5cb4d894f922cbbd1 61 Gene3D G3DSA:4.10.830.10 1 61 2.2E-30 T 13-10-2018 AP3564_05790 38415ef21f69fdf5cb4d894f922cbbd1 61 SUPERFAMILY SSF57716 3 61 1.64E-22 T 13-10-2018 AP3564_05790 38415ef21f69fdf5cb4d894f922cbbd1 61 Pfam PF00253 Ribosomal protein S14p/S29e 10 60 2.0E-24 T 13-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05790 38415ef21f69fdf5cb4d894f922cbbd1 61 Hamap MF_01364_B 30S ribosomal protein S14 type Z [rpsZ]. 1 61 26.208 T 13-10-2018 IPR023053 Ribosomal protein S14, type Z AP3564_05790 38415ef21f69fdf5cb4d894f922cbbd1 61 ProSitePatterns PS00527 Ribosomal protein S14 signature. 23 45 - T 13-10-2018 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_06970 daa2cb470fd8928a949d8c43b62363ed 213 SMART SM00881 81 181 7.5E-21 T 13-10-2018 IPR003781 CoA-binding GO:0048037 AP3564_06970 daa2cb470fd8928a949d8c43b62363ed 213 Gene3D G3DSA:3.40.50.720 83 212 5.2E-46 T 13-10-2018 AP3564_06970 daa2cb470fd8928a949d8c43b62363ed 213 SUPERFAMILY SSF46785 9 80 7.48E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_06970 daa2cb470fd8928a949d8c43b62363ed 213 SUPERFAMILY SSF51735 84 208 5.91E-29 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_06970 daa2cb470fd8928a949d8c43b62363ed 213 Pfam PF02629 CoA binding domain 84 179 3.3E-30 T 13-10-2018 IPR003781 CoA-binding GO:0048037 AP3564_06970 daa2cb470fd8928a949d8c43b62363ed 213 Gene3D G3DSA:1.10.10.10 1 82 4.5E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_06970 daa2cb470fd8928a949d8c43b62363ed 213 Pfam PF06971 Putative DNA-binding protein N-terminus 7 55 3.2E-20 T 13-10-2018 IPR009718 Rex DNA-binding, C-terminal domain GO:0005737|GO:0045892|GO:0051775 AP3564_06970 daa2cb470fd8928a949d8c43b62363ed 213 Hamap MF_01131 Redox-sensing transcriptional repressor Rex [rex]. 3 210 39.217 T 13-10-2018 IPR022876 Redox-sensing transcriptional repressor Rex GO:0005737|GO:0045892|GO:0051775 AP3564_04270 d34f7468f5fc3ec15c82dccb87782f06 765 SUPERFAMILY SSF51726 408 758 3.79E-111 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 AP3564_04270 d34f7468f5fc3ec15c82dccb87782f06 765 Gene3D G3DSA:3.20.20.210 12 525 0.0 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 AP3564_04270 d34f7468f5fc3ec15c82dccb87782f06 765 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 8 759 34.027 T 13-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 AP3564_04270 d34f7468f5fc3ec15c82dccb87782f06 765 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 432 754 1.4E-146 T 13-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 AP3564_04270 d34f7468f5fc3ec15c82dccb87782f06 765 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 10 317 9.9E-121 T 13-10-2018 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 AP3564_04270 d34f7468f5fc3ec15c82dccb87782f06 765 Gene3D G3DSA:3.20.20.210 391 757 0.0 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 AP3564_04270 d34f7468f5fc3ec15c82dccb87782f06 765 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 13 759 0.0 T 13-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 AP3564_04270 d34f7468f5fc3ec15c82dccb87782f06 765 SUPERFAMILY SSF51726 10 394 3.14E-102 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 AP3564_04270 d34f7468f5fc3ec15c82dccb87782f06 765 PIRSF PIRSF000382 7 764 0.0 T 13-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 AP3564_04865 efa99adaaa87fbbe4c46b1eb85c0f9bb 454 SUPERFAMILY SSF52540 114 325 1.23E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_04865 efa99adaaa87fbbe4c46b1eb85c0f9bb 454 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 5 448 35.857 T 13-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 AP3564_04865 efa99adaaa87fbbe4c46b1eb85c0f9bb 454 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 146 166 8.6E-54 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AP3564_04865 efa99adaaa87fbbe4c46b1eb85c0f9bb 454 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 210 224 8.6E-54 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AP3564_04865 efa99adaaa87fbbe4c46b1eb85c0f9bb 454 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 178 192 8.6E-54 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AP3564_04865 efa99adaaa87fbbe4c46b1eb85c0f9bb 454 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 244 271 8.6E-54 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AP3564_04865 efa99adaaa87fbbe4c46b1eb85c0f9bb 454 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 407 426 8.6E-54 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AP3564_04865 efa99adaaa87fbbe4c46b1eb85c0f9bb 454 Gene3D G3DSA:3.40.50.300 98 277 5.7E-56 T 13-10-2018 AP3564_04865 efa99adaaa87fbbe4c46b1eb85c0f9bb 454 Pfam PF11638 DnaA N-terminal domain 6 65 3.8E-20 T 13-10-2018 IPR024633 DnaA N-terminal domain AP3564_04865 efa99adaaa87fbbe4c46b1eb85c0f9bb 454 ProSitePatterns PS01008 DnaA protein signature. 407 426 - T 13-10-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 AP3564_04865 efa99adaaa87fbbe4c46b1eb85c0f9bb 454 SUPERFAMILY SSF48295 344 449 5.49E-39 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AP3564_04865 efa99adaaa87fbbe4c46b1eb85c0f9bb 454 Gene3D G3DSA:1.10.8.60 279 347 9.3E-30 T 13-10-2018 AP3564_04865 efa99adaaa87fbbe4c46b1eb85c0f9bb 454 SMART SM00382 145 273 5.6E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_04865 efa99adaaa87fbbe4c46b1eb85c0f9bb 454 SMART SM00760 357 426 1.3E-42 T 13-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 AP3564_04865 efa99adaaa87fbbe4c46b1eb85c0f9bb 454 Pfam PF00308 Bacterial dnaA protein 113 329 2.6E-108 T 13-10-2018 IPR013317 Chromosomal replication initiator protein DnaA AP3564_04865 efa99adaaa87fbbe4c46b1eb85c0f9bb 454 Gene3D G3DSA:1.10.1750.10 348 451 1.4E-37 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AP3564_04865 efa99adaaa87fbbe4c46b1eb85c0f9bb 454 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 8 447 4.6E-190 T 13-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 AP3564_04865 efa99adaaa87fbbe4c46b1eb85c0f9bb 454 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 358 426 2.6E-31 T 13-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 AP3564_04865 efa99adaaa87fbbe4c46b1eb85c0f9bb 454 Gene3D G3DSA:3.30.300.180 1 82 5.3E-31 T 13-10-2018 IPR038454 DnaA, N-terminal domain superfamily AP3564_01310 71c61e69cc905425f5eaa3c6b0c12fe5 357 Gene3D G3DSA:3.40.190.10 39 322 2.3E-125 T 13-10-2018 AP3564_01310 71c61e69cc905425f5eaa3c6b0c12fe5 357 PIRSF PIRSF019574 1 356 4.2E-135 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AP3564_01310 71c61e69cc905425f5eaa3c6b0c12fe5 357 Gene3D G3DSA:3.40.190.10 139 330 2.3E-125 T 13-10-2018 AP3564_01310 71c61e69cc905425f5eaa3c6b0c12fe5 357 SUPERFAMILY SSF53850 34 353 3.81E-100 T 13-10-2018 AP3564_01310 71c61e69cc905425f5eaa3c6b0c12fe5 357 Pfam PF13416 Bacterial extracellular solute-binding protein 49 321 1.6E-44 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein AP3564_01310 71c61e69cc905425f5eaa3c6b0c12fe5 357 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 40 56 1.2E-61 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AP3564_01310 71c61e69cc905425f5eaa3c6b0c12fe5 357 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 83 97 1.2E-61 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AP3564_01310 71c61e69cc905425f5eaa3c6b0c12fe5 357 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 56 77 1.2E-61 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AP3564_01310 71c61e69cc905425f5eaa3c6b0c12fe5 357 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 211 230 1.2E-61 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AP3564_01310 71c61e69cc905425f5eaa3c6b0c12fe5 357 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 130 146 1.2E-61 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AP3564_01310 71c61e69cc905425f5eaa3c6b0c12fe5 357 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 156 170 1.2E-61 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AP3564_01310 71c61e69cc905425f5eaa3c6b0c12fe5 357 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 174 193 1.2E-61 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AP3564_01310 71c61e69cc905425f5eaa3c6b0c12fe5 357 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 255 274 1.2E-61 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AP3564_01310 71c61e69cc905425f5eaa3c6b0c12fe5 357 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 99 112 1.2E-61 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AP3564_01310 71c61e69cc905425f5eaa3c6b0c12fe5 357 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 300 326 1.2E-61 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AP3564_16415 9f3371b57e674e5ca84164b242c8c197 294 Pfam PF16745 RsgA N-terminal domain 3 56 5.0E-26 T 13-10-2018 IPR031944 Ribosome biogenesis GTPase RsgA, N-terminal AP3564_16415 9f3371b57e674e5ca84164b242c8c197 294 Pfam PF03193 RsgA GTPase 59 226 1.6E-60 T 13-10-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 AP3564_16415 9f3371b57e674e5ca84164b242c8c197 294 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 39 284 2.7E-87 T 13-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 AP3564_16415 9f3371b57e674e5ca84164b242c8c197 294 Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 2 291 39.255 T 13-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 AP3564_16415 9f3371b57e674e5ca84164b242c8c197 294 Gene3D G3DSA:3.40.50.300 62 226 4.6E-47 T 13-10-2018 AP3564_16415 9f3371b57e674e5ca84164b242c8c197 294 SUPERFAMILY SSF50249 1 63 3.6E-17 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_16415 9f3371b57e674e5ca84164b242c8c197 294 SUPERFAMILY SSF52540 64 292 5.35E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_16415 9f3371b57e674e5ca84164b242c8c197 294 Gene3D G3DSA:1.10.40.50 227 294 1.0E-24 T 13-10-2018 AP3564_16415 9f3371b57e674e5ca84164b242c8c197 294 Gene3D G3DSA:2.40.50.140 1 61 5.8E-27 T 13-10-2018 AP3564_10070 ade0235c941c000c6a53da146d18aab1 879 SUPERFAMILY SSF52540 161 551 1.39E-99 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_10070 ade0235c941c000c6a53da146d18aab1 879 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 863 0.0 T 13-10-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0042026 AP3564_10070 ade0235c941c000c6a53da146d18aab1 879 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 637 655 - T 13-10-2018 IPR028299 ClpA/B, conserved site 2 AP3564_10070 ade0235c941c000c6a53da146d18aab1 879 SUPERFAMILY SSF52540 552 863 6.27E-86 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_10070 ade0235c941c000c6a53da146d18aab1 879 Gene3D G3DSA:1.10.8.60 774 869 2.7E-28 T 13-10-2018 AP3564_10070 ade0235c941c000c6a53da146d18aab1 879 SUPERFAMILY SSF81923 4 160 1.57E-34 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 AP3564_10070 ade0235c941c000c6a53da146d18aab1 879 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 68 1.6E-12 T 13-10-2018 IPR004176 Clp, N-terminal AP3564_10070 ade0235c941c000c6a53da146d18aab1 879 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 97 149 8.1E-7 T 13-10-2018 IPR004176 Clp, N-terminal AP3564_10070 ade0235c941c000c6a53da146d18aab1 879 SMART SM01086 774 863 5.9E-34 T 13-10-2018 IPR019489 Clp ATPase, C-terminal AP3564_10070 ade0235c941c000c6a53da146d18aab1 879 Gene3D G3DSA:1.10.1780.10 1 152 5.9E-30 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 AP3564_10070 ade0235c941c000c6a53da146d18aab1 879 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 774 852 3.9E-25 T 13-10-2018 IPR019489 Clp ATPase, C-terminal AP3564_10070 ade0235c941c000c6a53da146d18aab1 879 SMART SM00382 202 347 3.6E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_10070 ade0235c941c000c6a53da146d18aab1 879 SMART SM00382 603 775 3.7E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_10070 ade0235c941c000c6a53da146d18aab1 879 Gene3D G3DSA:3.40.50.300 347 550 7.9E-72 T 13-10-2018 AP3564_10070 ade0235c941c000c6a53da146d18aab1 879 Gene3D G3DSA:3.40.50.300 153 346 1.7E-75 T 13-10-2018 AP3564_10070 ade0235c941c000c6a53da146d18aab1 879 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 298 310 - T 13-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 AP3564_10070 ade0235c941c000c6a53da146d18aab1 879 Gene3D G3DSA:3.40.50.300 556 772 2.1E-90 T 13-10-2018 AP3564_10070 ade0235c941c000c6a53da146d18aab1 879 Pfam PF07724 AAA domain (Cdc48 subfamily) 602 767 3.4E-57 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AP3564_10070 ade0235c941c000c6a53da146d18aab1 879 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 207 340 2.5E-14 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AP3564_10070 ade0235c941c000c6a53da146d18aab1 879 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 681 699 6.6E-43 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 AP3564_10070 ade0235c941c000c6a53da146d18aab1 879 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 607 625 6.6E-43 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 AP3564_10070 ade0235c941c000c6a53da146d18aab1 879 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 652 670 6.6E-43 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 AP3564_10070 ade0235c941c000c6a53da146d18aab1 879 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 714 728 6.6E-43 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 AP3564_16725 ce90b189de3a35d00bab43be1158f494 542 Pfam PF10079 Bacillithiol biosynthesis BshC 5 539 6.2E-169 T 13-10-2018 IPR011199 Bacillithiol biosynthesis BshC AP3564_16725 ce90b189de3a35d00bab43be1158f494 542 Hamap MF_01867 Putative cysteine ligase BshC [bshC]. 1 542 30.945 T 13-10-2018 IPR011199 Bacillithiol biosynthesis BshC AP3564_16725 ce90b189de3a35d00bab43be1158f494 542 TIGRFAM TIGR03998 thiol_BshC: bacillithiol biosynthesis cysteine-adding enzyme BshC 11 540 1.1E-179 T 13-10-2018 IPR011199 Bacillithiol biosynthesis BshC AP3564_16725 ce90b189de3a35d00bab43be1158f494 542 PIRSF PIRSF012535 1 542 2.7E-191 T 13-10-2018 IPR011199 Bacillithiol biosynthesis BshC AP3564_01595 30a775d8eaf8135d3ff7790eda2bd1c7 373 TIGRFAM TIGR04478 rSAM_YfkAB: radical SAM/CxCxxxxC motif protein YfkAB 9 371 5.0E-196 T 13-10-2018 IPR031004 Radical SAM/CxCxxxxC motif protein YfkAB AP3564_01595 30a775d8eaf8135d3ff7790eda2bd1c7 373 Pfam PF08756 YfkB-like domain 221 371 1.5E-77 T 13-10-2018 IPR014866 YfkB-like domain AP3564_01595 30a775d8eaf8135d3ff7790eda2bd1c7 373 SUPERFAMILY SSF102114 34 326 1.27E-27 T 13-10-2018 AP3564_01595 30a775d8eaf8135d3ff7790eda2bd1c7 373 Pfam PF04055 Radical SAM superfamily 37 192 9.9E-13 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AP3564_01595 30a775d8eaf8135d3ff7790eda2bd1c7 373 Gene3D G3DSA:3.20.20.70 25 292 7.2E-24 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_01595 30a775d8eaf8135d3ff7790eda2bd1c7 373 Pfam PF13353 4Fe-4S single cluster domain 41 135 9.6E-6 T 13-10-2018 AP3564_08810 4a785f74c9d9ce1694e019c2fb8165c9 760 SUPERFAMILY SSF50249 52 132 1.03E-18 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_08810 4a785f74c9d9ce1694e019c2fb8165c9 760 Pfam PF08206 Ribonuclease B OB domain 144 198 6.4E-10 T 13-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain AP3564_08810 4a785f74c9d9ce1694e019c2fb8165c9 760 Pfam PF08206 Ribonuclease B OB domain 71 129 1.1E-21 T 13-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain AP3564_08810 4a785f74c9d9ce1694e019c2fb8165c9 760 Pfam PF00773 RNB domain 245 573 5.4E-117 T 13-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 AP3564_08810 4a785f74c9d9ce1694e019c2fb8165c9 760 Gene3D G3DSA:2.40.50.140 57 132 1.2E-18 T 13-10-2018 AP3564_08810 4a785f74c9d9ce1694e019c2fb8165c9 760 Gene3D G3DSA:2.40.50.140 134 200 1.8E-10 T 13-10-2018 AP3564_08810 4a785f74c9d9ce1694e019c2fb8165c9 760 Hamap MF_01895 Ribonuclease R [rnr]. 22 705 61.583 T 13-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 AP3564_08810 4a785f74c9d9ce1694e019c2fb8165c9 760 TIGRFAM TIGR02063 RNase_R: ribonuclease R 2 705 7.3E-291 T 13-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 AP3564_08810 4a785f74c9d9ce1694e019c2fb8165c9 760 SUPERFAMILY SSF50249 123 222 2.34E-21 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_08810 4a785f74c9d9ce1694e019c2fb8165c9 760 SUPERFAMILY SSF50249 205 622 1.77E-149 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_08810 4a785f74c9d9ce1694e019c2fb8165c9 760 SMART SM00357 70 130 2.1E-11 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 AP3564_08810 4a785f74c9d9ce1694e019c2fb8165c9 760 SMART SM00357 135 199 3.4E-10 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 AP3564_08810 4a785f74c9d9ce1694e019c2fb8165c9 760 Gene3D G3DSA:2.40.50.140 626 733 5.6E-29 T 13-10-2018 AP3564_08810 4a785f74c9d9ce1694e019c2fb8165c9 760 SMART SM00955 245 575 5.6E-181 T 13-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 AP3564_08810 4a785f74c9d9ce1694e019c2fb8165c9 760 SUPERFAMILY SSF50249 623 710 3.09E-25 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_08810 4a785f74c9d9ce1694e019c2fb8165c9 760 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 55 705 1.3E-250 T 13-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 AP3564_08810 4a785f74c9d9ce1694e019c2fb8165c9 760 SMART SM00316 623 705 1.3E-21 T 13-10-2018 IPR022967 RNA-binding domain, S1 AP3564_08810 4a785f74c9d9ce1694e019c2fb8165c9 760 Pfam PF00575 S1 RNA binding domain 622 704 2.5E-17 T 13-10-2018 IPR003029 S1 domain GO:0003676 AP3564_08810 4a785f74c9d9ce1694e019c2fb8165c9 760 ProSitePatterns PS01175 Ribonuclease II family signature. 542 566 - T 13-10-2018 IPR022966 Ribonuclease II/R, conserved site AP3564_15930 f7e676c0249fd58f3d42933e0311a04a 404 Gene3D G3DSA:3.30.2130.10 256 404 6.7E-30 T 13-10-2018 AP3564_15930 f7e676c0249fd58f3d42933e0311a04a 404 SUPERFAMILY SSF53633 3 247 2.62E-69 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AP3564_15930 f7e676c0249fd58f3d42933e0311a04a 404 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 65 400 1.5E-91 T 13-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AP3564_15930 f7e676c0249fd58f3d42933e0311a04a 404 Pfam PF00696 Amino acid kinase family 3 235 5.0E-50 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 AP3564_15930 f7e676c0249fd58f3d42933e0311a04a 404 Pfam PF13840 ACT domain 336 398 2.5E-20 T 13-10-2018 IPR027795 CASTOR, ACT domain AP3564_15930 f7e676c0249fd58f3d42933e0311a04a 404 SUPERFAMILY SSF55021 335 403 9.58E-16 T 13-10-2018 AP3564_15930 f7e676c0249fd58f3d42933e0311a04a 404 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 1 401 5.7E-137 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AP3564_15930 f7e676c0249fd58f3d42933e0311a04a 404 SUPERFAMILY SSF55021 260 346 3.21E-11 T 13-10-2018 AP3564_15930 f7e676c0249fd58f3d42933e0311a04a 404 Gene3D G3DSA:3.40.1160.10 1 255 1.6E-84 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AP3564_15930 f7e676c0249fd58f3d42933e0311a04a 404 PIRSF PIRSF000726 1 64 1.6E-10 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AP3564_15930 f7e676c0249fd58f3d42933e0311a04a 404 PIRSF PIRSF000726 60 404 3.2E-88 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AP3564_15930 f7e676c0249fd58f3d42933e0311a04a 404 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 13-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AP3564_09485 7cddfa28f753e9ce24c3b165baca4ecd 272 Hamap MF_01934 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 5 271 55.786 T 13-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 AP3564_09485 7cddfa28f753e9ce24c3b165baca4ecd 272 Gene3D G3DSA:3.90.226.10 2 209 5.5E-80 T 13-10-2018 AP3564_09485 7cddfa28f753e9ce24c3b165baca4ecd 272 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 110 130 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 AP3564_09485 7cddfa28f753e9ce24c3b165baca4ecd 272 TIGRFAM TIGR01929 menB: naphthoate synthase 11 268 1.1E-130 T 13-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 AP3564_09485 7cddfa28f753e9ce24c3b165baca4ecd 272 Gene3D G3DSA:1.10.12.10 210 260 4.0E-29 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal AP3564_09485 7cddfa28f753e9ce24c3b165baca4ecd 272 Pfam PF00378 Enoyl-CoA hydratase/isomerase 17 267 1.2E-91 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AP3564_09485 7cddfa28f753e9ce24c3b165baca4ecd 272 SUPERFAMILY SSF52096 6 268 5.27E-82 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 Pfam PF00702 haloacid dehalogenase-like hydrolase 492 705 1.4E-49 T 13-10-2018 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 Gene3D G3DSA:2.70.150.20 287 399 1.7E-43 T 13-10-2018 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 Pfam PF00122 E1-E2 ATPase 295 476 6.9E-56 T 13-10-2018 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 Gene3D G3DSA:3.40.1110.10 507 623 1.9E-97 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 PRINTS PR00942 Copper-transporting ATPase 1 signature 6 31 3.4E-11 T 13-10-2018 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 PRINTS PR00942 Copper-transporting ATPase 1 signature 190 210 3.4E-11 T 13-10-2018 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 PRINTS PR00942 Copper-transporting ATPase 1 signature 210 235 3.4E-11 T 13-10-2018 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 SUPERFAMILY SSF81653 298 394 4.84E-29 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 73 136 1.9E-12 T 13-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 7 69 9.7E-12 T 13-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 Gene3D G3DSA:3.30.70.100 1 71 3.4E-22 T 13-10-2018 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 209 794 1.6E-194 T 13-10-2018 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 PRINTS PR00943 Copper-transporting ATPase signature 212 231 2.5E-20 T 13-10-2018 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 PRINTS PR00943 Copper-transporting ATPase signature 417 431 2.5E-20 T 13-10-2018 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 PRINTS PR00943 Copper-transporting ATPase signature 479 494 2.5E-20 T 13-10-2018 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 PRINTS PR00943 Copper-transporting ATPase signature 117 137 2.5E-20 T 13-10-2018 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 PRINTS PR00943 Copper-transporting ATPase signature 88 102 2.5E-20 T 13-10-2018 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 PRINTS PR00943 Copper-transporting ATPase signature 264 283 2.5E-20 T 13-10-2018 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 PRINTS PR00943 Copper-transporting ATPase signature 668 685 2.5E-20 T 13-10-2018 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 Gene3D G3DSA:3.40.50.1000 477 743 1.9E-97 T 13-10-2018 IPR023214 HAD superfamily AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 SUPERFAMILY SSF55008 73 141 9.69E-22 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 SUPERFAMILY SSF56784 495 791 2.89E-65 T 13-10-2018 IPR036412 HAD-like superfamily AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 267 770 6.4E-99 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 Pfam PF00403 Heavy-metal-associated domain 8 67 2.6E-15 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 Pfam PF00403 Heavy-metal-associated domain 76 136 2.5E-18 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 SUPERFAMILY SSF81665 262 760 1.44E-11 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 ProSitePatterns PS01047 Heavy-metal-associated domain. 11 39 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 616 627 7.3E-28 T 13-10-2018 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 638 648 7.3E-28 T 13-10-2018 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 344 358 7.3E-28 T 13-10-2018 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 714 726 7.3E-28 T 13-10-2018 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 496 510 7.3E-28 T 13-10-2018 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 691 710 7.3E-28 T 13-10-2018 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 Gene3D G3DSA:3.30.70.100 72 149 8.5E-22 T 13-10-2018 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 SUPERFAMILY SSF55008 4 70 1.57E-19 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 498 504 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 227 793 2.5E-205 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AP3564_14050 7e1d803088a82b72cc9414e875b5a85b 798 ProSitePatterns PS01047 Heavy-metal-associated domain. 78 107 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AP3564_09990 6620bb6ea46d63566b893f8a464a9d6c 370 Pfam PF07282 Putative transposase DNA-binding domain 296 363 1.0E-20 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal AP3564_09990 6620bb6ea46d63566b893f8a464a9d6c 370 Pfam PF01385 Probable transposase 169 282 3.4E-21 T 13-10-2018 IPR001959 Probable transposase, IS891/IS1136/IS1341 AP3564_09990 6620bb6ea46d63566b893f8a464a9d6c 370 Pfam PF12323 Helix-turn-helix domain 1 47 1.8E-22 T 13-10-2018 IPR021027 Transposase, putative, helix-turn-helix domain AP3564_09990 6620bb6ea46d63566b893f8a464a9d6c 370 TIGRFAM TIGR01766 tspaseT_teng_C: transposase, IS605 OrfB family 250 323 3.3E-8 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal AP3564_08450 6620bb6ea46d63566b893f8a464a9d6c 370 Pfam PF07282 Putative transposase DNA-binding domain 296 363 1.0E-20 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal AP3564_08450 6620bb6ea46d63566b893f8a464a9d6c 370 Pfam PF01385 Probable transposase 169 282 3.4E-21 T 13-10-2018 IPR001959 Probable transposase, IS891/IS1136/IS1341 AP3564_08450 6620bb6ea46d63566b893f8a464a9d6c 370 Pfam PF12323 Helix-turn-helix domain 1 47 1.8E-22 T 13-10-2018 IPR021027 Transposase, putative, helix-turn-helix domain AP3564_08450 6620bb6ea46d63566b893f8a464a9d6c 370 TIGRFAM TIGR01766 tspaseT_teng_C: transposase, IS605 OrfB family 250 323 3.3E-8 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal AP3564_13935 f611e9c6dfa847d9579e2a4b1d12daf1 371 SUPERFAMILY SSF55874 217 362 3.8E-35 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_13935 f611e9c6dfa847d9579e2a4b1d12daf1 371 Gene3D G3DSA:3.30.565.10 214 369 7.1E-37 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_13935 f611e9c6dfa847d9579e2a4b1d12daf1 371 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 254 363 3.8E-19 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_13935 f611e9c6dfa847d9579e2a4b1d12daf1 371 SMART SM00387 253 364 2.9E-27 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_13935 f611e9c6dfa847d9579e2a4b1d12daf1 371 SMART SM00304 90 142 1.5E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AP3564_13935 f611e9c6dfa847d9579e2a4b1d12daf1 371 Pfam PF00672 HAMP domain 90 138 7.5E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AP3564_13935 f611e9c6dfa847d9579e2a4b1d12daf1 371 SUPERFAMILY SSF158472 90 140 4.84E-8 T 13-10-2018 AP3564_13935 f611e9c6dfa847d9579e2a4b1d12daf1 371 Pfam PF00512 His Kinase A (phospho-acceptor) domain 144 202 8.2E-10 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AP3564_13935 f611e9c6dfa847d9579e2a4b1d12daf1 371 Gene3D G3DSA:1.10.287.130 87 202 1.3E-25 T 13-10-2018 AP3564_13935 f611e9c6dfa847d9579e2a4b1d12daf1 371 SUPERFAMILY SSF47384 127 206 1.31E-14 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AP3564_13935 f611e9c6dfa847d9579e2a4b1d12daf1 371 SMART SM00388 143 207 6.6E-12 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AP3564_13935 f611e9c6dfa847d9579e2a4b1d12daf1 371 PRINTS PR00344 Bacterial sensor protein C-terminal signature 308 318 9.7E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_13935 f611e9c6dfa847d9579e2a4b1d12daf1 371 PRINTS PR00344 Bacterial sensor protein C-terminal signature 290 304 9.7E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_13935 f611e9c6dfa847d9579e2a4b1d12daf1 371 PRINTS PR00344 Bacterial sensor protein C-terminal signature 325 343 9.7E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_18705 f7e49c0e2e51956ee9c7c507aa9e24ef 591 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 2 586 3.1E-267 T 13-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 AP3564_18705 f7e49c0e2e51956ee9c7c507aa9e24ef 591 SUPERFAMILY SSF55261 295 422 1.8E-42 T 13-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 AP3564_18705 f7e49c0e2e51956ee9c7c507aa9e24ef 591 Gene3D G3DSA:3.30.1360.30 278 422 3.0E-199 T 13-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 AP3564_18705 f7e49c0e2e51956ee9c7c507aa9e24ef 591 Pfam PF01336 OB-fold nucleic acid binding domain 20 105 2.8E-16 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 AP3564_18705 f7e49c0e2e51956ee9c7c507aa9e24ef 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 196 208 6.2E-27 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_18705 f7e49c0e2e51956ee9c7c507aa9e24ef 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 477 493 6.2E-27 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_18705 f7e49c0e2e51956ee9c7c507aa9e24ef 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 213 226 6.2E-27 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_18705 f7e49c0e2e51956ee9c7c507aa9e24ef 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 521 535 6.2E-27 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_18705 f7e49c0e2e51956ee9c7c507aa9e24ef 591 Gene3D G3DSA:3.30.930.10 122 584 3.0E-199 T 13-10-2018 AP3564_18705 f7e49c0e2e51956ee9c7c507aa9e24ef 591 Pfam PF02938 GAD domain 314 408 4.0E-30 T 13-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 AP3564_18705 f7e49c0e2e51956ee9c7c507aa9e24ef 591 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 3 587 35.241 T 13-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 AP3564_18705 f7e49c0e2e51956ee9c7c507aa9e24ef 591 SUPERFAMILY SSF50249 4 108 2.86E-32 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_18705 f7e49c0e2e51956ee9c7c507aa9e24ef 591 SUPERFAMILY SSF55681 118 587 6.64E-111 T 13-10-2018 AP3564_18705 f7e49c0e2e51956ee9c7c507aa9e24ef 591 Gene3D G3DSA:2.40.50.140 1 110 8.7E-34 T 13-10-2018 AP3564_18705 f7e49c0e2e51956ee9c7c507aa9e24ef 591 Pfam PF00152 tRNA synthetases class II (D, K and N) 123 560 1.4E-112 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_03865 26b84eafc01f0601ebb3d2af85ec300c 437 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 417 45.522 T 13-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AP3564_03865 26b84eafc01f0601ebb3d2af85ec300c 437 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2 416 5.9E-179 T 13-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AP3564_03865 26b84eafc01f0601ebb3d2af85ec300c 437 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 407 2.3E-118 T 13-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 AP3564_03865 26b84eafc01f0601ebb3d2af85ec300c 437 Gene3D G3DSA:3.65.10.10 20 231 2.7E-175 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 AP3564_03865 26b84eafc01f0601ebb3d2af85ec300c 437 Gene3D G3DSA:3.65.10.10 6 415 2.7E-175 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 AP3564_03865 26b84eafc01f0601ebb3d2af85ec300c 437 SUPERFAMILY SSF55205 2 419 3.14E-144 T 13-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 AP3564_14650 e5a62de9dc38c20370d679f92279ba15 415 SUPERFAMILY SSF81442 54 142 1.03E-5 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_14650 e5a62de9dc38c20370d679f92279ba15 415 Gene3D G3DSA:1.20.210.10 133 308 1.3E-5 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_02105 3841a08aba0dcad4ab8343cb44cb6b39 525 Gene3D G3DSA:3.30.413.10 196 336 1.9E-41 T 13-10-2018 AP3564_02105 3841a08aba0dcad4ab8343cb44cb6b39 525 SUPERFAMILY SSF55124 7 140 6.21E-30 T 13-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AP3564_02105 3841a08aba0dcad4ab8343cb44cb6b39 525 PRINTS PR00397 Sirohaem Fe-binding site signature 430 448 3.0E-7 T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AP3564_02105 3841a08aba0dcad4ab8343cb44cb6b39 525 PRINTS PR00397 Sirohaem Fe-binding site signature 478 496 3.0E-7 T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AP3564_02105 3841a08aba0dcad4ab8343cb44cb6b39 525 Gene3D G3DSA:3.90.480.10 73 163 2.8E-23 T 13-10-2018 AP3564_02105 3841a08aba0dcad4ab8343cb44cb6b39 525 Gene3D G3DSA:3.90.480.10 337 420 2.3E-19 T 13-10-2018 AP3564_02105 3841a08aba0dcad4ab8343cb44cb6b39 525 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 349 416 1.8E-12 T 13-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AP3564_02105 3841a08aba0dcad4ab8343cb44cb6b39 525 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 67 131 2.1E-17 T 13-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AP3564_02105 3841a08aba0dcad4ab8343cb44cb6b39 525 SUPERFAMILY SSF55124 345 419 1.8E-18 T 13-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AP3564_02105 3841a08aba0dcad4ab8343cb44cb6b39 525 Gene3D G3DSA:3.30.413.10 426 515 6.4E-16 T 13-10-2018 AP3564_02105 3841a08aba0dcad4ab8343cb44cb6b39 525 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 170 328 6.1E-40 T 13-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AP3564_02105 3841a08aba0dcad4ab8343cb44cb6b39 525 SUPERFAMILY SSF56014 141 343 1.3E-48 T 13-10-2018 AP3564_02105 3841a08aba0dcad4ab8343cb44cb6b39 525 SUPERFAMILY SSF56014 430 497 1.44E-16 T 13-10-2018 AP3564_12910 bdcfc0e7a30f032f62a9193ff5f13c1a 323 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 180 310 1.8E-67 T 13-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 AP3564_12910 bdcfc0e7a30f032f62a9193ff5f13c1a 323 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 6 165 38.131 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AP3564_12910 bdcfc0e7a30f032f62a9193ff5f13c1a 323 SUPERFAMILY SSF55068 3 170 6.67E-76 T 13-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AP3564_12910 bdcfc0e7a30f032f62a9193ff5f13c1a 323 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 176 302 39.265 T 13-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 AP3564_12910 bdcfc0e7a30f032f62a9193ff5f13c1a 323 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 7 158 7.8E-66 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AP3564_12910 bdcfc0e7a30f032f62a9193ff5f13c1a 323 Gene3D G3DSA:3.30.1060.10 1 166 1.6E-69 T 13-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AP3564_12910 bdcfc0e7a30f032f62a9193ff5f13c1a 323 Pfam PF01625 Peptide methionine sulfoxide reductase 9 159 1.1E-62 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AP3564_12910 bdcfc0e7a30f032f62a9193ff5f13c1a 323 SUPERFAMILY SSF51316 178 318 3.77E-63 T 13-10-2018 IPR011057 Mss4-like superfamily AP3564_12910 bdcfc0e7a30f032f62a9193ff5f13c1a 323 Gene3D G3DSA:2.170.150.20 176 319 1.4E-63 T 13-10-2018 AP3564_12910 bdcfc0e7a30f032f62a9193ff5f13c1a 323 Pfam PF01641 SelR domain 182 301 9.2E-51 T 13-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 AP3564_02845 e2d554a202fd0ef8edf646226efb902d 139 Hamap MF_00287 Probable disulfide formation protein [bdbC]. 3 138 23.662 T 13-10-2018 IPR012187 Disulphide bond formation protein BdbC AP3564_02845 e2d554a202fd0ef8edf646226efb902d 139 Pfam PF02600 Disulfide bond formation protein DsbB 8 114 7.8E-14 T 13-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 AP3564_02845 e2d554a202fd0ef8edf646226efb902d 139 SUPERFAMILY SSF158442 10 135 8.89E-31 T 13-10-2018 IPR023380 DsbB-like superfamily AP3564_02845 e2d554a202fd0ef8edf646226efb902d 139 PIRSF PIRSF036659 1 139 2.9E-56 T 13-10-2018 IPR012187 Disulphide bond formation protein BdbC AP3564_02845 e2d554a202fd0ef8edf646226efb902d 139 Gene3D G3DSA:1.20.1550.10 2 115 6.5E-13 T 13-10-2018 IPR023380 DsbB-like superfamily AP3564_04440 a7d9a3c87000485a6b604b8a3365e5bb 149 SUPERFAMILY SSF54427 3 144 1.74E-32 T 13-10-2018 IPR032710 NTF2-like domain superfamily AP3564_04440 a7d9a3c87000485a6b604b8a3365e5bb 149 Pfam PF14534 Domain of unknown function (DUF4440) 9 120 1.1E-7 T 13-10-2018 IPR027843 Domain of unknown function DUF4440 AP3564_04440 a7d9a3c87000485a6b604b8a3365e5bb 149 Gene3D G3DSA:3.10.450.50 2 149 6.2E-37 T 13-10-2018 AP3564_04440 a7d9a3c87000485a6b604b8a3365e5bb 149 TIGRFAM TIGR02246 TIGR02246: conserved hypothetical protein 6 129 3.9E-34 T 13-10-2018 IPR011944 Steroid delta5-4-isomerase KEGG: 00140+5.3.3.1|KEGG: 00984+5.3.3.1|MetaCyc: PWY-2582|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-699|MetaCyc: PWY-7299 AP3564_08615 c7bcc644291368450304dcfb3f78a7d0 192 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 90 101 - T 13-10-2018 IPR018215 ClpP, Ser active site AP3564_08615 c7bcc644291368450304dcfb3f78a7d0 192 SUPERFAMILY SSF52096 10 191 4.31E-73 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AP3564_08615 c7bcc644291368450304dcfb3f78a7d0 192 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 1 192 2.3E-109 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AP3564_08615 c7bcc644291368450304dcfb3f78a7d0 192 Gene3D G3DSA:3.90.226.10 1 192 1.4E-83 T 13-10-2018 AP3564_08615 c7bcc644291368450304dcfb3f78a7d0 192 Pfam PF00574 Clp protease 13 191 5.9E-88 T 13-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA AP3564_08615 c7bcc644291368450304dcfb3f78a7d0 192 PRINTS PR00127 Clp protease catalytic subunit P signature 59 79 5.7E-54 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AP3564_08615 c7bcc644291368450304dcfb3f78a7d0 192 PRINTS PR00127 Clp protease catalytic subunit P signature 90 107 5.7E-54 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AP3564_08615 c7bcc644291368450304dcfb3f78a7d0 192 PRINTS PR00127 Clp protease catalytic subunit P signature 168 187 5.7E-54 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AP3564_08615 c7bcc644291368450304dcfb3f78a7d0 192 PRINTS PR00127 Clp protease catalytic subunit P signature 19 34 5.7E-54 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AP3564_08615 c7bcc644291368450304dcfb3f78a7d0 192 PRINTS PR00127 Clp protease catalytic subunit P signature 111 130 5.7E-54 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AP3564_08615 c7bcc644291368450304dcfb3f78a7d0 192 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 112 125 - T 13-10-2018 IPR033135 ClpP, histidine active site AP3564_08615 c7bcc644291368450304dcfb3f78a7d0 192 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 3 192 43.205 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AP3564_12805 b01a2ea8e7cb70ad6bdbb6713697e9c5 374 SUPERFAMILY SSF110836 3 89 6.67E-22 T 13-10-2018 IPR036498 Scaffold protein Nfu/NifU, N-terminal domain superfamily AP3564_12805 b01a2ea8e7cb70ad6bdbb6713697e9c5 374 Gene3D G3DSA:3.30.1370.70 1 92 1.0E-26 T 13-10-2018 IPR036498 Scaffold protein Nfu/NifU, N-terminal domain superfamily AP3564_12805 b01a2ea8e7cb70ad6bdbb6713697e9c5 374 Gene3D G3DSA:1.25.10.10 194 373 2.0E-27 T 13-10-2018 IPR011989 Armadillo-like helical AP3564_12805 b01a2ea8e7cb70ad6bdbb6713697e9c5 374 SUPERFAMILY SSF48371 210 372 4.87E-33 T 13-10-2018 IPR016024 Armadillo-type fold AP3564_12805 b01a2ea8e7cb70ad6bdbb6713697e9c5 374 SMART SM00567 E-Z type HEAT repeats 310 339 0.02 T 13-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 AP3564_12805 b01a2ea8e7cb70ad6bdbb6713697e9c5 374 SMART SM00567 E-Z type HEAT repeats 248 277 0.0032 T 13-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 AP3564_12805 b01a2ea8e7cb70ad6bdbb6713697e9c5 374 SMART SM00567 E-Z type HEAT repeats 279 308 4.3E-4 T 13-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 AP3564_12805 b01a2ea8e7cb70ad6bdbb6713697e9c5 374 Pfam PF13769 Virulence factor 109 188 5.5E-29 T 13-10-2018 IPR025989 Virulence factor domain AP3564_12805 b01a2ea8e7cb70ad6bdbb6713697e9c5 374 Pfam PF13646 HEAT repeats 267 347 3.5E-13 T 13-10-2018 AP3564_12805 b01a2ea8e7cb70ad6bdbb6713697e9c5 374 SMART SM00932 4 90 1.3E-24 T 13-10-2018 IPR014824 Scaffold protein Nfu/NifU, N-terminal AP3564_12805 b01a2ea8e7cb70ad6bdbb6713697e9c5 374 Pfam PF08712 Scaffold protein Nfu/NifU N terminal 6 88 2.5E-19 T 13-10-2018 IPR014824 Scaffold protein Nfu/NifU, N-terminal AP3564_12580 f107581d3f996e03137fab1f86addd37 373 Gene3D G3DSA:3.40.50.970 5 373 3.6E-122 T 13-10-2018 AP3564_12580 f107581d3f996e03137fab1f86addd37 373 SUPERFAMILY SSF52518 21 368 3.57E-104 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold AP3564_12580 f107581d3f996e03137fab1f86addd37 373 TIGRFAM TIGR03181 PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 25 365 6.8E-143 T 13-10-2018 IPR017596 Pyruvate dehydrogenase E1 component subunit alpha/BCKADH E1-alpha KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 AP3564_12580 f107581d3f996e03137fab1f86addd37 373 Pfam PF00676 Dehydrogenase E1 component 53 343 7.6E-105 T 13-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 AP3564_09475 477996eb771b69d0d55793c75fa9ce61 576 SUPERFAMILY SSF52518 374 569 2.09E-33 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold AP3564_09475 477996eb771b69d0d55793c75fa9ce61 576 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 12 175 4.0E-39 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AP3564_09475 477996eb771b69d0d55793c75fa9ce61 576 Hamap MF_01659 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 3 568 36.896 T 13-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 AP3564_09475 477996eb771b69d0d55793c75fa9ce61 576 Gene3D G3DSA:3.40.50.970 1 173 3.0E-69 T 13-10-2018 AP3564_09475 477996eb771b69d0d55793c75fa9ce61 576 Gene3D G3DSA:3.40.50.970 377 575 1.3E-67 T 13-10-2018 AP3564_09475 477996eb771b69d0d55793c75fa9ce61 576 PIRSF PIRSF004983 1 574 5.8E-203 T 13-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 AP3564_09475 477996eb771b69d0d55793c75fa9ce61 576 Gene3D G3DSA:3.40.50.1220 197 374 3.0E-56 T 13-10-2018 AP3564_09475 477996eb771b69d0d55793c75fa9ce61 576 Pfam PF16582 Middle domain of thiamine pyrophosphate 217 400 1.9E-13 T 13-10-2018 IPR032264 Menaquinone biosynthesis protein MenD, middle domain KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 AP3564_09475 477996eb771b69d0d55793c75fa9ce61 576 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 433 550 1.3E-10 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AP3564_09475 477996eb771b69d0d55793c75fa9ce61 576 TIGRFAM TIGR00173 menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 11 443 1.7E-155 T 13-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 AP3564_09475 477996eb771b69d0d55793c75fa9ce61 576 SUPERFAMILY SSF52467 166 368 1.75E-15 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AP3564_09475 477996eb771b69d0d55793c75fa9ce61 576 SUPERFAMILY SSF52518 12 179 2.4E-37 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold AP3564_19240 27fbeeff88d0c3a1da565b52bef6fb14 361 Gene3D G3DSA:2.40.30.40 77 164 2.8E-137 T 13-10-2018 IPR023367 Peptidase M42, domain 2 AP3564_19240 27fbeeff88d0c3a1da565b52bef6fb14 361 SUPERFAMILY SSF53187 6 358 4.19E-74 T 13-10-2018 AP3564_19240 27fbeeff88d0c3a1da565b52bef6fb14 361 Pfam PF05343 M42 glutamyl aminopeptidase 48 342 1.8E-117 T 13-10-2018 IPR008007 Peptidase M42 AP3564_19240 27fbeeff88d0c3a1da565b52bef6fb14 361 SUPERFAMILY SSF101821 73 182 4.27E-34 T 13-10-2018 AP3564_19240 27fbeeff88d0c3a1da565b52bef6fb14 361 Gene3D G3DSA:3.40.630.10 12 345 2.8E-137 T 13-10-2018 AP3564_19240 27fbeeff88d0c3a1da565b52bef6fb14 361 PIRSF PIRSF001123 4 361 2.5E-151 T 13-10-2018 IPR008007 Peptidase M42 AP3564_16435 4741bfc32dea981b61f1cbdf0591a073 448 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 7 446 3.0E-146 T 13-10-2018 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 AP3564_16435 4741bfc32dea981b61f1cbdf0591a073 448 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 227 241 4.1E-31 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AP3564_16435 4741bfc32dea981b61f1cbdf0591a073 448 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 428 445 4.1E-31 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AP3564_16435 4741bfc32dea981b61f1cbdf0591a073 448 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 256 266 4.1E-31 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AP3564_16435 4741bfc32dea981b61f1cbdf0591a073 448 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 324 336 4.1E-31 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AP3564_16435 4741bfc32dea981b61f1cbdf0591a073 448 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 374 390 4.1E-31 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AP3564_16435 4741bfc32dea981b61f1cbdf0591a073 448 TIGRFAM TIGR00446 nop2p: NOL1/NOP2/sun family putative RNA methylase 183 445 1.9E-65 T 13-10-2018 IPR011023 Nop2p GO:0003723|GO:0006364|GO:0008757 Reactome: R-HSA-6790901|Reactome: R-HSA-8869496 AP3564_16435 4741bfc32dea981b61f1cbdf0591a073 448 SUPERFAMILY SSF48013 2 130 2.88E-37 T 13-10-2018 IPR035926 NusB-like superfamily AP3564_16435 4741bfc32dea981b61f1cbdf0591a073 448 Gene3D G3DSA:3.40.50.150 144 445 3.4E-87 T 13-10-2018 AP3564_16435 4741bfc32dea981b61f1cbdf0591a073 448 Pfam PF01029 NusB family 4 128 1.9E-32 T 13-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 AP3564_16435 4741bfc32dea981b61f1cbdf0591a073 448 SUPERFAMILY SSF53335 139 446 5.16E-73 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_16435 4741bfc32dea981b61f1cbdf0591a073 448 Pfam PF01189 16S rRNA methyltransferase RsmB/F 245 444 5.2E-64 T 13-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 AP3564_16435 4741bfc32dea981b61f1cbdf0591a073 448 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 323 334 - T 13-10-2018 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 AP3564_16435 4741bfc32dea981b61f1cbdf0591a073 448 Gene3D G3DSA:1.10.940.10 1 142 1.9E-41 T 13-10-2018 IPR035926 NusB-like superfamily AP3564_12590 df6ba46d5357dcb063bb3de1949c8dc8 432 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 202 430 1.6E-91 T 13-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 AP3564_12590 df6ba46d5357dcb063bb3de1949c8dc8 432 SUPERFAMILY SSF51230 3 93 1.57E-27 T 13-10-2018 IPR011053 Single hybrid motif AP3564_12590 df6ba46d5357dcb063bb3de1949c8dc8 432 Pfam PF00364 Biotin-requiring enzyme 4 76 1.3E-23 T 13-10-2018 IPR000089 Biotin/lipoyl attachment AP3564_12590 df6ba46d5357dcb063bb3de1949c8dc8 432 SUPERFAMILY SSF52777 190 430 3.47E-90 T 13-10-2018 AP3564_12590 df6ba46d5357dcb063bb3de1949c8dc8 432 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 13-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AP3564_12590 df6ba46d5357dcb063bb3de1949c8dc8 432 Gene3D G3DSA:2.40.50.100 2 81 1.8E-27 T 13-10-2018 AP3564_12590 df6ba46d5357dcb063bb3de1949c8dc8 432 Pfam PF02817 e3 binding domain 124 158 1.0E-14 T 13-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 AP3564_12590 df6ba46d5357dcb063bb3de1949c8dc8 432 Gene3D G3DSA:3.30.559.10 166 430 6.3E-93 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 AP3564_12590 df6ba46d5357dcb063bb3de1949c8dc8 432 Gene3D G3DSA:4.10.320.10 112 165 8.3E-22 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AP3564_12590 df6ba46d5357dcb063bb3de1949c8dc8 432 SUPERFAMILY SSF47005 121 164 7.59E-13 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AP3564_02390 8b19fe928d13560cf07384acecfd0952 344 SUPERFAMILY SSF52540 37 249 3.33E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_02390 8b19fe928d13560cf07384acecfd0952 344 SMART SM00382 49 233 1.2E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_02390 8b19fe928d13560cf07384acecfd0952 344 Gene3D G3DSA:3.40.50.300 3 272 5.6E-59 T 13-10-2018 AP3564_02390 8b19fe928d13560cf07384acecfd0952 344 Pfam PF00005 ABC transporter 41 184 2.8E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_11730 2cd8865ec6fece4256d02f556431cc37 242 SUPERFAMILY SSF102114 26 218 8.89E-15 T 13-10-2018 AP3564_11730 2cd8865ec6fece4256d02f556431cc37 242 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 4 239 36.391 T 13-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 AP3564_11730 2cd8865ec6fece4256d02f556431cc37 242 PIRSF PIRSF000370 2 242 1.4E-50 T 13-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 AP3564_11730 2cd8865ec6fece4256d02f556431cc37 242 Pfam PF04055 Radical SAM superfamily 28 124 8.6E-12 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AP3564_11730 2cd8865ec6fece4256d02f556431cc37 242 TIGRFAM TIGR03365 Bsubt_queE: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 2 242 1.0E-113 T 13-10-2018 IPR017742 7-carboxy-7-deazaguanine synthase KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 AP3564_11730 2cd8865ec6fece4256d02f556431cc37 242 Gene3D G3DSA:3.20.20.70 4 229 8.5E-30 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_11730 2cd8865ec6fece4256d02f556431cc37 242 Pfam PF13394 4Fe-4S single cluster domain 26 110 8.5E-10 T 13-10-2018 AP3564_01770 2c50ca50430919a7d46cc6c69fd30ca1 170 Pfam PF10661 WXG100 protein secretion system (Wss), protein EssA 25 169 2.2E-23 T 13-10-2018 IPR034026 ESAT-6 secretion machinery protein EssA AP3564_01770 2c50ca50430919a7d46cc6c69fd30ca1 170 TIGRFAM TIGR03927 T7SS_EssA_Firm: type VII secretion protein EssA 26 168 1.3E-12 T 13-10-2018 IPR018920 ESAT-6 secretion machinery protein EssA/YueC AP3564_05675 9ee89a5154bf8be3531ade5ff90a8170 121 SUPERFAMILY SSF48300 1 57 6.41E-19 T 13-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05675 9ee89a5154bf8be3531ade5ff90a8170 121 Gene3D G3DSA:1.20.5.710 1 50 1.8E-22 T 13-10-2018 AP3564_05675 9ee89a5154bf8be3531ade5ff90a8170 121 Gene3D G3DSA:3.30.1390.10 51 121 3.5E-32 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AP3564_05675 9ee89a5154bf8be3531ade5ff90a8170 121 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 1 121 26.13 T 13-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05675 9ee89a5154bf8be3531ade5ff90a8170 121 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 55 121 6.5E-32 T 13-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05675 9ee89a5154bf8be3531ade5ff90a8170 121 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 56 121 2.0E-17 T 13-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05675 9ee89a5154bf8be3531ade5ff90a8170 121 SUPERFAMILY SSF54736 51 121 5.06E-26 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AP3564_05675 9ee89a5154bf8be3531ade5ff90a8170 121 TIGRFAM TIGR00855 L12: ribosomal protein bL12 2 121 2.0E-52 T 13-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05675 9ee89a5154bf8be3531ade5ff90a8170 121 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 2 49 3.0E-22 T 13-10-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_10740 57d9d3faa4f7e87caa0494fc3cdd255b 493 Pfam PF08244 Glycosyl hydrolases family 32 C terminal 341 484 1.6E-31 T 13-10-2018 IPR013189 Glycosyl hydrolase family 32, C-terminal AP3564_10740 57d9d3faa4f7e87caa0494fc3cdd255b 493 Gene3D G3DSA:2.115.10.20 3 354 5.2E-113 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily AP3564_10740 57d9d3faa4f7e87caa0494fc3cdd255b 493 TIGRFAM TIGR01322 scrB_fam: sucrose-6-phosphate hydrolase 23 464 2.5E-188 T 13-10-2018 IPR006232 Sucrose-6-phosphate hydrolase GO:0004564|GO:0005737|GO:0005975 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26 AP3564_10740 57d9d3faa4f7e87caa0494fc3cdd255b 493 SMART SM00640 37 454 4.1E-154 T 13-10-2018 IPR001362 Glycoside hydrolase, family 32 GO:0004553|GO:0005975 AP3564_10740 57d9d3faa4f7e87caa0494fc3cdd255b 493 Pfam PF00251 Glycosyl hydrolases family 32 N-terminal domain 37 338 3.8E-105 T 13-10-2018 IPR013148 Glycosyl hydrolase family 32, N-terminal AP3564_10740 57d9d3faa4f7e87caa0494fc3cdd255b 493 SUPERFAMILY SSF49899 338 489 1.19E-36 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily AP3564_10740 57d9d3faa4f7e87caa0494fc3cdd255b 493 ProSitePatterns PS00609 Glycosyl hydrolases family 32 active site. 37 50 - T 13-10-2018 IPR018053 Glycoside hydrolase, family 32, active site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26 AP3564_10740 57d9d3faa4f7e87caa0494fc3cdd255b 493 SUPERFAMILY SSF75005 29 339 3.93E-114 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily AP3564_10740 57d9d3faa4f7e87caa0494fc3cdd255b 493 Gene3D G3DSA:2.60.120.560 355 489 6.2E-34 T 13-10-2018 AP3564_06425 3f4f6435804f928dcac6a6c486991517 140 Pfam PF13098 Thioredoxin-like domain 27 119 3.4E-9 T 13-10-2018 IPR012336 Thioredoxin-like fold AP3564_06425 3f4f6435804f928dcac6a6c486991517 140 SUPERFAMILY SSF52833 26 138 6.14E-18 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AP3564_06425 3f4f6435804f928dcac6a6c486991517 140 Gene3D G3DSA:3.40.30.10 11 140 2.8E-17 T 13-10-2018 AP3564_17380 71c90f5e9bba4ed3b4b7be771f032d05 196 SUPERFAMILY SSF88946 3 93 1.15E-22 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AP3564_17380 71c90f5e9bba4ed3b4b7be771f032d05 196 Gene3D G3DSA:1.10.10.10 84 169 6.6E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_17380 71c90f5e9bba4ed3b4b7be771f032d05 196 Pfam PF08281 Sigma-70, region 4 112 159 3.2E-10 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AP3564_17380 71c90f5e9bba4ed3b4b7be771f032d05 196 Gene3D G3DSA:1.10.1740.10 1 71 8.5E-25 T 13-10-2018 AP3564_17380 71c90f5e9bba4ed3b4b7be771f032d05 196 SUPERFAMILY SSF88659 91 167 4.3E-16 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AP3564_17380 71c90f5e9bba4ed3b4b7be771f032d05 196 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 4 164 2.2E-34 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AP3564_17380 71c90f5e9bba4ed3b4b7be771f032d05 196 Pfam PF04542 Sigma-70 region 2 8 74 7.0E-17 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AP3564_06595 8f8fd8bc36a0dd6602bcf4d0c5f1060d 238 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 77 4.5E-20 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_06595 8f8fd8bc36a0dd6602bcf4d0c5f1060d 238 Pfam PF07729 FCD domain 103 224 5.2E-28 T 13-10-2018 IPR011711 GntR, C-terminal AP3564_06595 8f8fd8bc36a0dd6602bcf4d0c5f1060d 238 SMART SM00345 18 77 1.6E-20 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_06595 8f8fd8bc36a0dd6602bcf4d0c5f1060d 238 Gene3D G3DSA:1.20.120.530 100 237 6.8E-30 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AP3564_06595 8f8fd8bc36a0dd6602bcf4d0c5f1060d 238 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 4.3E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_06595 8f8fd8bc36a0dd6602bcf4d0c5f1060d 238 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 4.3E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_06595 8f8fd8bc36a0dd6602bcf4d0c5f1060d 238 SMART SM00895 103 225 4.0E-23 T 13-10-2018 IPR011711 GntR, C-terminal AP3564_06595 8f8fd8bc36a0dd6602bcf4d0c5f1060d 238 SUPERFAMILY SSF46785 7 81 2.49E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_06595 8f8fd8bc36a0dd6602bcf4d0c5f1060d 238 SUPERFAMILY SSF48008 101 233 4.71E-29 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AP3564_06595 8f8fd8bc36a0dd6602bcf4d0c5f1060d 238 Gene3D G3DSA:1.10.10.10 3 78 1.7E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_08790 94e9e1662a0129c0dd503187ac5810e6 430 Gene3D G3DSA:3.30.390.10 3 127 4.0E-61 T 13-10-2018 IPR029017 Enolase-like, N-terminal AP3564_08790 94e9e1662a0129c0dd503187ac5810e6 430 Hamap MF_00318 Enolase [eno]. 2 413 46.672 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AP3564_08790 94e9e1662a0129c0dd503187ac5810e6 430 PRINTS PR00148 Enolase signature 313 324 5.9E-48 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AP3564_08790 94e9e1662a0129c0dd503187ac5810e6 430 PRINTS PR00148 Enolase signature 107 123 5.9E-48 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AP3564_08790 94e9e1662a0129c0dd503187ac5810e6 430 PRINTS PR00148 Enolase signature 336 350 5.9E-48 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AP3564_08790 94e9e1662a0129c0dd503187ac5810e6 430 PRINTS PR00148 Enolase signature 161 174 5.9E-48 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AP3564_08790 94e9e1662a0129c0dd503187ac5810e6 430 PRINTS PR00148 Enolase signature 37 51 5.9E-48 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AP3564_08790 94e9e1662a0129c0dd503187ac5810e6 430 PRINTS PR00148 Enolase signature 365 382 5.9E-48 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AP3564_08790 94e9e1662a0129c0dd503187ac5810e6 430 PIRSF PIRSF001400 1 427 1.4E-200 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AP3564_08790 94e9e1662a0129c0dd503187ac5810e6 430 ProSitePatterns PS00164 Enolase signature. 336 349 - T 13-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_08790 94e9e1662a0129c0dd503187ac5810e6 430 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 427 4.6E-224 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AP3564_08790 94e9e1662a0129c0dd503187ac5810e6 430 SMART SM01192 139 427 8.1E-235 T 13-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AP3564_08790 94e9e1662a0129c0dd503187ac5810e6 430 Pfam PF00113 Enolase, C-terminal TIM barrel domain 140 425 2.5E-144 T 13-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AP3564_08790 94e9e1662a0129c0dd503187ac5810e6 430 SMART SM01193 4 134 2.2E-102 T 13-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AP3564_08790 94e9e1662a0129c0dd503187ac5810e6 430 SUPERFAMILY SSF51604 138 428 3.25E-134 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AP3564_08790 94e9e1662a0129c0dd503187ac5810e6 430 Gene3D G3DSA:3.20.20.120 128 430 1.3E-141 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AP3564_08790 94e9e1662a0129c0dd503187ac5810e6 430 Pfam PF03952 Enolase, N-terminal domain 4 134 3.2E-64 T 13-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AP3564_08790 94e9e1662a0129c0dd503187ac5810e6 430 SUPERFAMILY SSF54826 3 138 5.3E-62 T 13-10-2018 AP3564_08515 9dae63343ce890d58b5a331822ff1033 311 SUPERFAMILY SSF53795 132 298 1.4E-43 T 13-10-2018 AP3564_08515 9dae63343ce890d58b5a331822ff1033 311 Gene3D G3DSA:3.40.50.300 131 310 3.2E-77 T 13-10-2018 AP3564_08515 9dae63343ce890d58b5a331822ff1033 311 Gene3D G3DSA:3.40.1390.20 3 130 1.0E-43 T 13-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily AP3564_08515 9dae63343ce890d58b5a331822ff1033 311 Hamap MF_01249 HPr kinase/phosphorylase [hprK]. 3 306 42.861 T 13-10-2018 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 AP3564_08515 9dae63343ce890d58b5a331822ff1033 311 Pfam PF02603 HPr Serine kinase N terminus 4 127 3.8E-41 T 13-10-2018 IPR011126 HPr(Ser) kinase/phosphorylase, N-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 AP3564_08515 9dae63343ce890d58b5a331822ff1033 311 SUPERFAMILY SSF75138 2 131 2.35E-39 T 13-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily AP3564_08515 9dae63343ce890d58b5a331822ff1033 311 TIGRFAM TIGR00679 hpr-ser: HPr(Ser) kinase/phosphatase 6 301 1.3E-120 T 13-10-2018 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 AP3564_08515 9dae63343ce890d58b5a331822ff1033 311 Pfam PF07475 HPr Serine kinase C-terminal domain 130 298 3.9E-78 T 13-10-2018 IPR011104 HPr kinase/phosphorylase, C-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 AP3564_08465 fd3c70175c25d01882cf688e3ac3a452 660 SUPERFAMILY SSF52540 2 413 1.82E-147 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_08465 fd3c70175c25d01882cf688e3ac3a452 660 SMART SM00490 458 544 1.1E-20 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_08465 fd3c70175c25d01882cf688e3ac3a452 660 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 3 657 0.0 T 13-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 AP3564_08465 fd3c70175c25d01882cf688e3ac3a452 660 Gene3D G3DSA:4.10.860.10 605 659 1.2E-5 T 13-10-2018 AP3564_08465 fd3c70175c25d01882cf688e3ac3a452 660 Pfam PF00271 Helicase conserved C-terminal domain 433 543 3.4E-19 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_08465 fd3c70175c25d01882cf688e3ac3a452 660 Pfam PF02151 UvrB/uvrC motif 624 658 9.5E-9 T 13-10-2018 IPR001943 UVR domain GO:0005515 AP3564_08465 fd3c70175c25d01882cf688e3ac3a452 660 Gene3D G3DSA:3.40.50.300 1 242 1.1E-83 T 13-10-2018 AP3564_08465 fd3c70175c25d01882cf688e3ac3a452 660 SUPERFAMILY SSF52540 33 569 1.74E-35 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_08465 fd3c70175c25d01882cf688e3ac3a452 660 Pfam PF04851 Type III restriction enzyme, res subunit 12 138 3.8E-12 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AP3564_08465 fd3c70175c25d01882cf688e3ac3a452 660 Hamap MF_00204 UvrABC system protein B [uvrB]. 2 659 45.545 T 13-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 AP3564_08465 fd3c70175c25d01882cf688e3ac3a452 660 Gene3D G3DSA:3.40.50.300 413 594 4.7E-55 T 13-10-2018 AP3564_08465 fd3c70175c25d01882cf688e3ac3a452 660 SMART SM00487 8 424 1.0E-27 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AP3564_08465 fd3c70175c25d01882cf688e3ac3a452 660 SUPERFAMILY SSF46600 615 657 4.18E-10 T 13-10-2018 IPR036876 UVR domain superfamily AP3564_08465 fd3c70175c25d01882cf688e3ac3a452 660 Gene3D G3DSA:3.40.50.300 274 412 6.6E-55 T 13-10-2018 AP3564_08465 fd3c70175c25d01882cf688e3ac3a452 660 Pfam PF12344 Ultra-violet resistance protein B 550 592 5.2E-22 T 13-10-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain AP3564_06685 ca2a848280e5105050132596dba46fb4 308 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 305 1.6E-15 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AP3564_06685 ca2a848280e5105050132596dba46fb4 308 SUPERFAMILY SSF161098 69 296 1.01E-53 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_06685 ca2a848280e5105050132596dba46fb4 308 Gene3D G3DSA:1.10.3720.10 65 306 4.2E-64 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_03720 5382d924053b0c3e7e4d3d1fe1957de2 397 Pfam PF13542 Helix-turn-helix domain of transposase family ISL3 89 132 3.6E-7 T 13-10-2018 IPR032877 Transposase IS204/IS1001/IS1096/IS1165, helix-turn-helix domain AP3564_03720 5382d924053b0c3e7e4d3d1fe1957de2 397 Pfam PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 35 78 3.5E-13 T 13-10-2018 IPR029261 Transposase IS204/IS1001/IS1096/IS1165, zinc-finger AP3564_03720 5382d924053b0c3e7e4d3d1fe1957de2 397 Pfam PF01610 Transposase 156 383 7.5E-65 T 13-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain AP3564_09180 b2f87544a8600feebf33a7e3eb841c3e 626 Pfam PF02954 Bacterial regulatory protein, Fis family 586 622 4.2E-17 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AP3564_09180 b2f87544a8600feebf33a7e3eb841c3e 626 SMART SM00091 147 214 1.7E-6 T 13-10-2018 IPR000014 PAS domain AP3564_09180 b2f87544a8600feebf33a7e3eb841c3e 626 SUPERFAMILY SSF52540 283 529 1.19E-71 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_09180 b2f87544a8600feebf33a7e3eb841c3e 626 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 605 625 2.7E-14 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AP3564_09180 b2f87544a8600feebf33a7e3eb841c3e 626 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 588 605 2.7E-14 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AP3564_09180 b2f87544a8600feebf33a7e3eb841c3e 626 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 308 321 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AP3564_09180 b2f87544a8600feebf33a7e3eb841c3e 626 Gene3D G3DSA:3.30.450.20 134 244 1.3E-16 T 13-10-2018 AP3564_09180 b2f87544a8600feebf33a7e3eb841c3e 626 Gene3D G3DSA:1.10.8.60 456 534 2.9E-23 T 13-10-2018 AP3564_09180 b2f87544a8600feebf33a7e3eb841c3e 626 Pfam PF00158 Sigma-54 interaction domain 284 451 2.3E-69 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AP3564_09180 b2f87544a8600feebf33a7e3eb841c3e 626 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 147 200 1.1E-8 T 13-10-2018 IPR000014 PAS domain AP3564_09180 b2f87544a8600feebf33a7e3eb841c3e 626 SUPERFAMILY SSF54631 16 132 2.25E-15 T 13-10-2018 AP3564_09180 b2f87544a8600feebf33a7e3eb841c3e 626 SUPERFAMILY SSF55785 148 241 1.74E-15 T 13-10-2018 IPR035965 PAS domain superfamily AP3564_09180 b2f87544a8600feebf33a7e3eb841c3e 626 SMART SM00382 304 448 2.9E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_09180 b2f87544a8600feebf33a7e3eb841c3e 626 Gene3D G3DSA:3.40.50.300 269 455 2.5E-69 T 13-10-2018 AP3564_09180 b2f87544a8600feebf33a7e3eb841c3e 626 SUPERFAMILY SSF46689 498 624 1.93E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_09180 b2f87544a8600feebf33a7e3eb841c3e 626 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 371 386 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AP3564_09180 b2f87544a8600feebf33a7e3eb841c3e 626 Pfam PF00989 PAS fold 152 208 5.9E-8 T 13-10-2018 IPR013767 PAS fold GO:0006355 AP3564_09180 b2f87544a8600feebf33a7e3eb841c3e 626 Gene3D G3DSA:1.10.10.60 560 626 3.7E-18 T 13-10-2018 AP3564_09180 b2f87544a8600feebf33a7e3eb841c3e 626 Gene3D G3DSA:3.10.580.10 14 133 9.5E-12 T 13-10-2018 AP3564_03935 a11692870899cae8e2fb1d22d16aaffb 406 Pfam PF02371 Transposase IS116/IS110/IS902 family 272 351 2.3E-22 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_03935 a11692870899cae8e2fb1d22d16aaffb 406 Pfam PF01548 Transposase 6 161 5.9E-20 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_17695 a11692870899cae8e2fb1d22d16aaffb 406 Pfam PF02371 Transposase IS116/IS110/IS902 family 272 351 2.3E-22 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_17695 a11692870899cae8e2fb1d22d16aaffb 406 Pfam PF01548 Transposase 6 161 5.9E-20 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_18820 f791c68b54371bf96f470367a884e781 370 Gene3D G3DSA:3.40.50.10800 113 367 1.6E-84 T 13-10-2018 AP3564_18820 f791c68b54371bf96f470367a884e781 370 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 24 367 3.8E-119 T 13-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 AP3564_18820 f791c68b54371bf96f470367a884e781 370 Pfam PF02445 Quinolinate synthetase A protein 31 367 3.0E-109 T 13-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 AP3564_18820 f791c68b54371bf96f470367a884e781 370 Hamap MF_00569 Quinolinate synthase A [nadA]. 23 368 54.958 T 13-10-2018 IPR023515 Quinolinate synthase A, type 3 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342 AP3564_18820 f791c68b54371bf96f470367a884e781 370 Gene3D G3DSA:3.40.50.10800 231 316 1.6E-84 T 13-10-2018 AP3564_18820 f791c68b54371bf96f470367a884e781 370 Gene3D G3DSA:3.40.50.10800 31 349 1.6E-84 T 13-10-2018 AP3564_18820 f791c68b54371bf96f470367a884e781 370 SUPERFAMILY SSF142754 35 367 1.96E-100 T 13-10-2018 IPR036094 Quinolinate synthetase A superfamily GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 AP3564_07060 5414d7c1519a195742841747e7fa7088 103 Pfam PF01435 Peptidase family M48 13 102 3.2E-11 T 13-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AP3564_15805 de1212edabb0bde2a09a53cfc3291a1b 872 SMART SM00533 272 580 1.4E-114 T 13-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 AP3564_15805 de1212edabb0bde2a09a53cfc3291a1b 872 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 678 694 - T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 AP3564_15805 de1212edabb0bde2a09a53cfc3291a1b 872 Gene3D G3DSA:3.40.1170.10 1 117 6.2E-49 T 13-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 AP3564_15805 de1212edabb0bde2a09a53cfc3291a1b 872 PIRSF PIRSF037677 1 209 1.9E-33 T 13-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 AP3564_15805 de1212edabb0bde2a09a53cfc3291a1b 872 PIRSF PIRSF037677 165 847 4.4E-133 T 13-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 AP3564_15805 de1212edabb0bde2a09a53cfc3291a1b 872 SUPERFAMILY SSF52540 557 788 9.1E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_15805 de1212edabb0bde2a09a53cfc3291a1b 872 Pfam PF01624 MutS domain I 5 115 3.8E-47 T 13-10-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 AP3564_15805 de1212edabb0bde2a09a53cfc3291a1b 872 Gene3D G3DSA:3.30.420.110 124 249 6.5E-14 T 13-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 AP3564_15805 de1212edabb0bde2a09a53cfc3291a1b 872 Pfam PF00488 MutS domain V 601 787 1.7E-83 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 AP3564_15805 de1212edabb0bde2a09a53cfc3291a1b 872 Gene3D G3DSA:3.40.50.300 559 853 3.5E-104 T 13-10-2018 AP3564_15805 de1212edabb0bde2a09a53cfc3291a1b 872 Pfam PF05190 MutS family domain IV 417 508 2.6E-30 T 13-10-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 AP3564_15805 de1212edabb0bde2a09a53cfc3291a1b 872 Gene3D G3DSA:1.10.1420.10 254 549 6.6E-106 T 13-10-2018 AP3564_15805 de1212edabb0bde2a09a53cfc3291a1b 872 Pfam PF05192 MutS domain III 260 549 1.7E-48 T 13-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 AP3564_15805 de1212edabb0bde2a09a53cfc3291a1b 872 SMART SM00534 597 784 1.6E-117 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 AP3564_15805 de1212edabb0bde2a09a53cfc3291a1b 872 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 4 868 0.0 T 13-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 AP3564_15805 de1212edabb0bde2a09a53cfc3291a1b 872 SUPERFAMILY SSF48334 255 554 1.31E-92 T 13-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily AP3564_15805 de1212edabb0bde2a09a53cfc3291a1b 872 SUPERFAMILY SSF53150 114 268 6.15E-30 T 13-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 AP3564_15805 de1212edabb0bde2a09a53cfc3291a1b 872 Pfam PF05188 MutS domain II 125 241 1.7E-9 T 13-10-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 AP3564_15805 de1212edabb0bde2a09a53cfc3291a1b 872 Gene3D G3DSA:1.10.1420.10 389 525 6.6E-106 T 13-10-2018 AP3564_15805 de1212edabb0bde2a09a53cfc3291a1b 872 SUPERFAMILY SSF55271 2 112 3.4E-43 T 13-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 AP3564_15805 de1212edabb0bde2a09a53cfc3291a1b 872 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 4 863 25.5 T 13-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 AP3564_12940 8a4520f1e010a87d676f3b452ae815c9 270 Gene3D G3DSA:1.10.510.10 21 267 1.0E-43 T 13-10-2018 AP3564_12940 8a4520f1e010a87d676f3b452ae815c9 270 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 35 58 - T 13-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 AP3564_12940 8a4520f1e010a87d676f3b452ae815c9 270 SMART SM00219 29 244 1.7E-5 T 13-10-2018 IPR020635 Tyrosine-protein kinase, catalytic domain GO:0004713|GO:0006468 AP3564_12940 8a4520f1e010a87d676f3b452ae815c9 270 SUPERFAMILY SSF56112 15 245 9.17E-48 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily AP3564_12940 8a4520f1e010a87d676f3b452ae815c9 270 Pfam PF00069 Protein kinase domain 29 240 3.3E-35 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AP3564_11225 357636f8207917e2c0ef92f90c09ccd5 494 Gene3D G3DSA:3.40.605.10 12 478 5.8E-192 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AP3564_11225 357636f8207917e2c0ef92f90c09ccd5 494 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 252 259 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AP3564_11225 357636f8207917e2c0ef92f90c09ccd5 494 SUPERFAMILY SSF53720 3 482 3.4E-180 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AP3564_11225 357636f8207917e2c0ef92f90c09ccd5 494 Pfam PF00171 Aldehyde dehydrogenase family 16 480 8.9E-186 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AP3564_11225 357636f8207917e2c0ef92f90c09ccd5 494 Gene3D G3DSA:3.40.309.10 257 450 5.8E-192 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AP3564_07455 a4517a8236bb04a1d912733baa2902cf 415 Gene3D G3DSA:3.40.50.720 11 162 2.8E-19 T 13-10-2018 AP3564_07455 a4517a8236bb04a1d912733baa2902cf 415 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 17 114 4.0E-7 T 13-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AP3564_07455 a4517a8236bb04a1d912733baa2902cf 415 SUPERFAMILY SSF51735 16 130 9.01E-19 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_07455 a4517a8236bb04a1d912733baa2902cf 415 SMART SM00858 329 395 6.9E-6 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AP3564_07455 a4517a8236bb04a1d912733baa2902cf 415 Pfam PF08666 SAF domain 330 395 5.6E-8 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AP3564_18275 af0b2b62c9d822072afaa912150e011a 297 Hamap MF_00152 Probable endonuclease 4 [nfo]. 2 285 42.621 T 13-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 AP3564_18275 af0b2b62c9d822072afaa912150e011a 297 Pfam PF01261 Xylose isomerase-like TIM barrel 22 237 1.1E-39 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AP3564_18275 af0b2b62c9d822072afaa912150e011a 297 ProSitePatterns PS00730 AP endonucleases family 2 signature 2. 175 182 - T 13-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 AP3564_18275 af0b2b62c9d822072afaa912150e011a 297 Gene3D G3DSA:3.20.20.150 1 297 1.6E-105 T 13-10-2018 AP3564_18275 af0b2b62c9d822072afaa912150e011a 297 ProSitePatterns PS00729 AP endonucleases family 2 signature 1. 69 77 - T 13-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 AP3564_18275 af0b2b62c9d822072afaa912150e011a 297 TIGRFAM TIGR00587 nfo: apurinic endonuclease (APN1) 3 282 9.5E-102 T 13-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 AP3564_18275 af0b2b62c9d822072afaa912150e011a 297 SUPERFAMILY SSF51658 2 294 3.8E-103 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily AP3564_18275 af0b2b62c9d822072afaa912150e011a 297 ProSitePatterns PS00731 AP endonucleases family 2 signature 3. 213 229 - T 13-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 AP3564_18275 af0b2b62c9d822072afaa912150e011a 297 SMART SM00518 3 285 5.4E-127 T 13-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 AP3564_06965 945313b3bddca6bad5142d3c0589f067 640 Pfam PF16326 ABC transporter C-terminal domain 573 637 2.4E-13 T 13-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 AP3564_06965 945313b3bddca6bad5142d3c0589f067 640 Pfam PF00005 ABC transporter 347 477 3.1E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_06965 945313b3bddca6bad5142d3c0589f067 640 SUPERFAMILY SSF52540 4 236 2.25E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_06965 945313b3bddca6bad5142d3c0589f067 640 Pfam PF00005 ABC transporter 19 195 5.7E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_06965 945313b3bddca6bad5142d3c0589f067 640 Gene3D G3DSA:3.40.50.300 1 289 5.9E-71 T 13-10-2018 AP3564_06965 945313b3bddca6bad5142d3c0589f067 640 Gene3D G3DSA:3.40.50.300 292 560 1.3E-61 T 13-10-2018 AP3564_06965 945313b3bddca6bad5142d3c0589f067 640 ProSitePatterns PS00211 ABC transporters family signature. 449 463 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_06965 945313b3bddca6bad5142d3c0589f067 640 SMART SM00382 28 246 5.6E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_06965 945313b3bddca6bad5142d3c0589f067 640 SMART SM00382 356 522 3.3E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_06965 945313b3bddca6bad5142d3c0589f067 640 SUPERFAMILY SSF52540 316 533 1.75E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_06965 945313b3bddca6bad5142d3c0589f067 640 ProSitePatterns PS00211 ABC transporters family signature. 167 181 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_06965 945313b3bddca6bad5142d3c0589f067 640 Pfam PF12848 ABC transporter 234 319 3.8E-27 T 13-10-2018 IPR032781 ABC-transporter extension domain AP3564_17395 06b7f66f73ff5d94955b69e65eeb87dc 240 SMART SM00862 158 235 2.1E-25 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AP3564_17395 06b7f66f73ff5d94955b69e65eeb87dc 240 Pfam PF00072 Response regulator receiver domain 9 117 5.2E-34 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_17395 06b7f66f73ff5d94955b69e65eeb87dc 240 Pfam PF00486 Transcriptional regulatory protein, C terminal 158 235 2.6E-27 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AP3564_17395 06b7f66f73ff5d94955b69e65eeb87dc 240 Gene3D G3DSA:1.10.10.10 138 240 1.6E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_17395 06b7f66f73ff5d94955b69e65eeb87dc 240 Gene3D G3DSA:3.40.50.2300 1 137 2.1E-43 T 13-10-2018 AP3564_17395 06b7f66f73ff5d94955b69e65eeb87dc 240 SMART SM00448 7 117 4.3E-50 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_17395 06b7f66f73ff5d94955b69e65eeb87dc 240 SUPERFAMILY SSF52172 6 193 7.97E-46 T 13-10-2018 IPR011006 CheY-like superfamily AP3564_11025 1b3190ca64b03224474f7f7415dae2b4 326 Gene3D G3DSA:3.40.50.300 21 318 6.9E-56 T 13-10-2018 AP3564_11025 1b3190ca64b03224474f7f7415dae2b4 326 Pfam PF00005 ABC transporter 40 183 2.2E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_11025 1b3190ca64b03224474f7f7415dae2b4 326 SUPERFAMILY SSF52540 26 248 1.95E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_11025 1b3190ca64b03224474f7f7415dae2b4 326 SMART SM00382 48 235 1.0E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_18190 d1976163762ac788667152172f6b147d 426 Gene3D G3DSA:1.20.1250.20 214 406 1.6E-5 T 13-10-2018 AP3564_18190 d1976163762ac788667152172f6b147d 426 Gene3D G3DSA:1.20.1250.20 9 202 1.2E-16 T 13-10-2018 AP3564_18190 d1976163762ac788667152172f6b147d 426 Pfam PF07690 Major Facilitator Superfamily 27 335 1.3E-17 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AP3564_18190 d1976163762ac788667152172f6b147d 426 SUPERFAMILY SSF103473 15 401 4.05E-31 T 13-10-2018 IPR036259 MFS transporter superfamily AP3564_18190 d1976163762ac788667152172f6b147d 426 ProSitePatterns PS00217 Sugar transport proteins signature 2. 114 139 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AP3564_07880 4445abbab5ae9329dc18ee0440064a4e 645 SUPERFAMILY SSF51261 490 640 1.26E-53 T 13-10-2018 IPR011055 Duplicated hybrid motif AP3564_07880 4445abbab5ae9329dc18ee0440064a4e 645 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 496 616 4.2E-44 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 AP3564_07880 4445abbab5ae9329dc18ee0440064a4e 645 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 558 570 - T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 AP3564_07880 4445abbab5ae9329dc18ee0440064a4e 645 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 19 36 - T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AP3564_07880 4445abbab5ae9329dc18ee0440064a4e 645 Gene3D G3DSA:2.70.70.10 483 641 2.4E-56 T 13-10-2018 IPR011055 Duplicated hybrid motif AP3564_07880 4445abbab5ae9329dc18ee0440064a4e 645 Pfam PF02378 Phosphotransferase system, EIIC 109 402 9.0E-32 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AP3564_07880 4445abbab5ae9329dc18ee0440064a4e 645 Pfam PF00367 phosphotransferase system, EIIB 8 41 1.6E-15 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AP3564_07880 4445abbab5ae9329dc18ee0440064a4e 645 Gene3D G3DSA:3.30.1360.60 1 77 7.0E-30 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 AP3564_07880 4445abbab5ae9329dc18ee0440064a4e 645 SUPERFAMILY SSF55604 6 79 3.01E-23 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 AP3564_07880 4445abbab5ae9329dc18ee0440064a4e 645 TIGRFAM TIGR01995 PTS-II-ABC-beta: PTS system, beta-glucoside-specific IIABC component 3 640 3.7E-230 T 13-10-2018 IPR011297 Phosphotransferase system, beta-glucoside-specific IIABC component GO:0005886|GO:0008982|GO:0009401 AP3564_07880 4445abbab5ae9329dc18ee0440064a4e 645 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 495 619 6.0E-50 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 AP3564_08290 f8ee180d651c84dbc99cf04907a79ec9 572 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 142 235 2.5E-23 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AP3564_08290 f8ee180d651c84dbc99cf04907a79ec9 572 Gene3D G3DSA:1.20.140.10 247 407 1.1E-133 T 13-10-2018 AP3564_08290 f8ee180d651c84dbc99cf04907a79ec9 572 SUPERFAMILY SSF56645 17 260 2.62E-74 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AP3564_08290 f8ee180d651c84dbc99cf04907a79ec9 572 SUPERFAMILY SSF47203 245 412 1.22E-47 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AP3564_08290 f8ee180d651c84dbc99cf04907a79ec9 572 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 247 410 1.9E-40 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AP3564_08290 f8ee180d651c84dbc99cf04907a79ec9 572 Gene3D G3DSA:2.40.110.10 141 246 1.1E-133 T 13-10-2018 AP3564_08290 f8ee180d651c84dbc99cf04907a79ec9 572 Gene3D G3DSA:1.10.540.10 55 140 1.1E-133 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AP3564_08290 f8ee180d651c84dbc99cf04907a79ec9 572 Gene3D G3DSA:1.20.140.10 408 567 7.4E-21 T 13-10-2018 AP3564_08290 f8ee180d651c84dbc99cf04907a79ec9 572 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 26 138 2.0E-28 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AP3564_08290 f8ee180d651c84dbc99cf04907a79ec9 572 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 144 156 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AP3564_16410 408793598bb6ab145e6eb82c378f36e6 215 PIRSF PIRSF001461 1 215 1.2E-98 T 13-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AP3564_16410 408793598bb6ab145e6eb82c378f36e6 215 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 3 213 2.4E-95 T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AP3564_16410 408793598bb6ab145e6eb82c378f36e6 215 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 31 45 - T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AP3564_16410 408793598bb6ab145e6eb82c378f36e6 215 Pfam PF00834 Ribulose-phosphate 3 epimerase family 3 200 4.8E-90 T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AP3564_16410 408793598bb6ab145e6eb82c378f36e6 215 Gene3D G3DSA:3.20.20.70 1 214 3.1E-90 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_16410 408793598bb6ab145e6eb82c378f36e6 215 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 133 155 - T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AP3564_16410 408793598bb6ab145e6eb82c378f36e6 215 SUPERFAMILY SSF51366 1 214 7.85E-78 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AP3564_08770 a44152fd7ab7a8016452d760696c68d2 335 SUPERFAMILY SSF51735 3 168 4.4E-69 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_08770 a44152fd7ab7a8016452d760696c68d2 335 SUPERFAMILY SSF55347 152 314 5.95E-77 T 13-10-2018 AP3564_08770 a44152fd7ab7a8016452d760696c68d2 335 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 102 9.6E-41 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_08770 a44152fd7ab7a8016452d760696c68d2 335 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 157 313 3.6E-74 T 13-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_08770 a44152fd7ab7a8016452d760696c68d2 335 SMART SM00846 3 152 5.1E-102 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_08770 a44152fd7ab7a8016452d760696c68d2 335 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 150 157 - T 13-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_08770 a44152fd7ab7a8016452d760696c68d2 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 173 189 1.3E-43 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_08770 a44152fd7ab7a8016452d760696c68d2 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 269 284 1.3E-43 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_08770 a44152fd7ab7a8016452d760696c68d2 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 146 164 1.3E-43 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_08770 a44152fd7ab7a8016452d760696c68d2 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 109 122 1.3E-43 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_08770 a44152fd7ab7a8016452d760696c68d2 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 229 246 1.3E-43 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_08770 a44152fd7ab7a8016452d760696c68d2 335 Gene3D G3DSA:3.30.360.10 151 315 6.7E-165 T 13-10-2018 AP3564_08770 a44152fd7ab7a8016452d760696c68d2 335 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 325 6.8E-143 T 13-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_08770 a44152fd7ab7a8016452d760696c68d2 335 Gene3D G3DSA:3.40.50.720 4 329 6.7E-165 T 13-10-2018 AP3564_08770 a44152fd7ab7a8016452d760696c68d2 335 PIRSF PIRSF000149 1 334 1.9E-146 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_13590 dc141b1dcc8175509ae13c05ab785587 295 SUPERFAMILY SSF48452 29 178 4.83E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AP3564_13590 dc141b1dcc8175509ae13c05ab785587 295 Gene3D G3DSA:1.25.40.10 23 174 5.6E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AP3564_09625 c10695d9e1660e601b9bfb6eab9d5f2a 804 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 219 399 1.3E-72 T 13-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 AP3564_09625 c10695d9e1660e601b9bfb6eab9d5f2a 804 Gene3D G3DSA:3.90.740.10 226 410 1.4E-285 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AP3564_09625 c10695d9e1660e601b9bfb6eab9d5f2a 804 Gene3D G3DSA:3.40.50.620 32 571 1.4E-285 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AP3564_09625 c10695d9e1660e601b9bfb6eab9d5f2a 804 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 3 803 0.0 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AP3564_09625 c10695d9e1660e601b9bfb6eab9d5f2a 804 SUPERFAMILY SSF50677 224 410 1.15E-57 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AP3564_09625 c10695d9e1660e601b9bfb6eab9d5f2a 804 SUPERFAMILY SSF52374 1 625 2.09E-152 T 13-10-2018 AP3564_09625 c10695d9e1660e601b9bfb6eab9d5f2a 804 PRINTS PR00985 Leucyl-tRNA synthetase signature 557 567 1.1E-58 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AP3564_09625 c10695d9e1660e601b9bfb6eab9d5f2a 804 PRINTS PR00985 Leucyl-tRNA synthetase signature 184 197 1.1E-58 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AP3564_09625 c10695d9e1660e601b9bfb6eab9d5f2a 804 PRINTS PR00985 Leucyl-tRNA synthetase signature 524 546 1.1E-58 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AP3564_09625 c10695d9e1660e601b9bfb6eab9d5f2a 804 PRINTS PR00985 Leucyl-tRNA synthetase signature 152 168 1.1E-58 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AP3564_09625 c10695d9e1660e601b9bfb6eab9d5f2a 804 PRINTS PR00985 Leucyl-tRNA synthetase signature 213 232 1.1E-58 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AP3564_09625 c10695d9e1660e601b9bfb6eab9d5f2a 804 PRINTS PR00985 Leucyl-tRNA synthetase signature 485 503 1.1E-58 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AP3564_09625 c10695d9e1660e601b9bfb6eab9d5f2a 804 PRINTS PR00985 Leucyl-tRNA synthetase signature 126 143 1.1E-58 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AP3564_09625 c10695d9e1660e601b9bfb6eab9d5f2a 804 SUPERFAMILY SSF47323 619 803 3.74E-44 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_09625 c10695d9e1660e601b9bfb6eab9d5f2a 804 Pfam PF09334 tRNA synthetases class I (M) 39 170 6.0E-18 T 13-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_09625 c10695d9e1660e601b9bfb6eab9d5f2a 804 Pfam PF08264 Anticodon-binding domain of tRNA 654 766 2.0E-22 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 AP3564_09625 c10695d9e1660e601b9bfb6eab9d5f2a 804 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 52 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_09625 c10695d9e1660e601b9bfb6eab9d5f2a 804 Gene3D G3DSA:1.10.730.10 599 740 2.1E-49 T 13-10-2018 AP3564_09625 c10695d9e1660e601b9bfb6eab9d5f2a 804 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 412 603 6.9E-20 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_09625 c10695d9e1660e601b9bfb6eab9d5f2a 804 Gene3D G3DSA:3.10.20.590 744 803 3.1E-23 T 13-10-2018 AP3564_09625 c10695d9e1660e601b9bfb6eab9d5f2a 804 Gene3D G3DSA:2.30.210.10 572 588 1.4E-285 T 13-10-2018 AP3564_09625 c10695d9e1660e601b9bfb6eab9d5f2a 804 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 2 803 23.88 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AP3564_15990 ae2e8025e8dce8f11c5254e8cce97730 92 Pfam PF04456 Protein of unknown function (DUF503) 3 85 2.3E-30 T 13-10-2018 IPR007546 Protein of unknown function DUF503 AP3564_15990 ae2e8025e8dce8f11c5254e8cce97730 92 SUPERFAMILY SSF103007 2 92 1.28E-30 T 13-10-2018 IPR036746 TT1725-like superfamily AP3564_15990 ae2e8025e8dce8f11c5254e8cce97730 92 Gene3D G3DSA:3.30.70.1120 1 91 4.7E-26 T 13-10-2018 IPR036746 TT1725-like superfamily AP3564_02810 0adb6fe24f5df0ebcad777277021340e 493 Gene3D G3DSA:3.30.300.30 391 493 2.6E-26 T 13-10-2018 AP3564_02810 0adb6fe24f5df0ebcad777277021340e 493 SUPERFAMILY SSF56801 7 489 1.16E-113 T 13-10-2018 AP3564_02810 0adb6fe24f5df0ebcad777277021340e 493 Pfam PF00501 AMP-binding enzyme 10 393 1.5E-73 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AP3564_02810 0adb6fe24f5df0ebcad777277021340e 493 ProSitePatterns PS00455 Putative AMP-binding domain signature. 148 159 - T 13-10-2018 IPR020845 AMP-binding, conserved site AP3564_02810 0adb6fe24f5df0ebcad777277021340e 493 Gene3D G3DSA:3.40.50.12780 1 390 4.7E-82 T 13-10-2018 AP3564_02810 0adb6fe24f5df0ebcad777277021340e 493 Pfam PF13193 AMP-binding enzyme C-terminal domain 402 478 3.0E-16 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AP3564_18710 0ecb00622ee7a01076ff290c998db781 422 Gene3D G3DSA:3.40.50.800 329 422 2.6E-27 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily AP3564_18710 0ecb00622ee7a01076ff290c998db781 422 PIRSF PIRSF001549 1 422 1.1E-124 T 13-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 AP3564_18710 0ecb00622ee7a01076ff290c998db781 422 Gene3D G3DSA:3.30.930.10 2 325 2.3E-118 T 13-10-2018 AP3564_18710 0ecb00622ee7a01076ff290c998db781 422 SUPERFAMILY SSF52954 329 420 4.38E-25 T 13-10-2018 AP3564_18710 0ecb00622ee7a01076ff290c998db781 422 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 4 410 3.4E-160 T 13-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 AP3564_18710 0ecb00622ee7a01076ff290c998db781 422 Pfam PF03129 Anticodon binding domain 331 420 7.0E-18 T 13-10-2018 IPR004154 Anticodon-binding AP3564_18710 0ecb00622ee7a01076ff290c998db781 422 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 1 420 34.789 T 13-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 AP3564_18710 0ecb00622ee7a01076ff290c998db781 422 SUPERFAMILY SSF55681 3 317 9.0E-98 T 13-10-2018 AP3564_18710 0ecb00622ee7a01076ff290c998db781 422 Pfam PF13393 Histidyl-tRNA synthetase 8 313 6.4E-48 T 13-10-2018 AP3564_17460 2419be410ef6b440db5d4595c66f7935 397 Pfam PF00925 GTP cyclohydrolase II 207 371 1.8E-72 T 13-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AP3564_17460 2419be410ef6b440db5d4595c66f7935 397 SUPERFAMILY SSF142695 203 374 1.27E-69 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AP3564_17460 2419be410ef6b440db5d4595c66f7935 397 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 1 201 38.364 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AP3564_17460 2419be410ef6b440db5d4595c66f7935 397 SUPERFAMILY SSF55821 2 203 3.66E-84 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily AP3564_17460 2419be410ef6b440db5d4595c66f7935 397 Hamap MF_01283 Riboflavin biosynthesis protein RibBA [ribBA]. 1 393 54.849 T 13-10-2018 IPR016299 Riboflavin biosynthesis protein RibBA GO:0009231 KEGG: 00740+3.5.4.25+4.1.99.12|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AP3564_17460 2419be410ef6b440db5d4595c66f7935 397 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 6 196 1.5E-84 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AP3564_17460 2419be410ef6b440db5d4595c66f7935 397 PIRSF PIRSF001259 1 397 1.5E-186 T 13-10-2018 AP3564_17460 2419be410ef6b440db5d4595c66f7935 397 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 208 395 1.7E-82 T 13-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AP3564_17460 2419be410ef6b440db5d4595c66f7935 397 Gene3D G3DSA:3.90.870.10 1 203 4.0E-88 T 13-10-2018 AP3564_17460 2419be410ef6b440db5d4595c66f7935 397 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 1 197 7.2E-78 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AP3564_17460 2419be410ef6b440db5d4595c66f7935 397 Gene3D G3DSA:3.40.50.10990 204 374 5.6E-78 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AP3564_17460 2419be410ef6b440db5d4595c66f7935 397 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 202 397 42.667 T 13-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AP3564_07330 b113a08b1efde6557db7be4b1fe9511e 143 SUPERFAMILY SSF52540 2 137 1.54E-21 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_07330 b113a08b1efde6557db7be4b1fe9511e 143 Pfam PF00005 ABC transporter 2 88 1.0E-7 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_07330 b113a08b1efde6557db7be4b1fe9511e 143 Gene3D G3DSA:3.40.50.300 1 142 4.3E-23 T 13-10-2018 AP3564_16515 35d4debd371aff34a921f17ed4343d78 239 Gene3D G3DSA:3.40.50.620 10 239 2.0E-75 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AP3564_16515 35d4debd371aff34a921f17ed4343d78 239 TIGRFAM TIGR02055 APS_reductase: adenylylsulfate reductase, thioredoxin dependent 43 231 1.4E-75 T 13-10-2018 IPR011798 Adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019344|GO:0055114 KEGG: 00920+1.8.4.8 AP3564_16515 35d4debd371aff34a921f17ed4343d78 239 Hamap MF_00063 Phosphoadenosine phosphosulfate reductase [cysH]. 1 233 41.196 T 13-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 AP3564_16515 35d4debd371aff34a921f17ed4343d78 239 PIRSF PIRSF000857 6 238 1.6E-87 T 13-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 AP3564_16515 35d4debd371aff34a921f17ed4343d78 239 TIGRFAM TIGR00434 cysH: phosophoadenylyl-sulfate reductase 24 233 1.5E-93 T 13-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 AP3564_16515 35d4debd371aff34a921f17ed4343d78 239 SUPERFAMILY SSF52402 21 197 4.57E-53 T 13-10-2018 AP3564_16515 35d4debd371aff34a921f17ed4343d78 239 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 38 209 8.9E-52 T 13-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 AP3564_08605 f9640c154f6141ec38c498b6f6e6facb 316 Gene3D G3DSA:1.10.10.10 215 309 3.9E-37 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_08605 f9640c154f6141ec38c498b6f6e6facb 316 Pfam PF14527 WhiA LAGLIDADG-like domain 125 217 8.3E-36 T 13-10-2018 IPR039518 WhiA, LAGLIDADG-like domain AP3564_08605 f9640c154f6141ec38c498b6f6e6facb 316 Pfam PF02650 WhiA C-terminal HTH domain 220 304 3.4E-35 T 13-10-2018 IPR023054 Sporulation regulator WhiA, C-terminal AP3564_08605 f9640c154f6141ec38c498b6f6e6facb 316 TIGRFAM TIGR00647 DNA_bind_WhiA: DNA-binding protein WhiA 4 305 3.4E-130 T 13-10-2018 IPR033981 Sporulation regulator WhiA-like AP3564_08605 f9640c154f6141ec38c498b6f6e6facb 316 Gene3D G3DSA:3.10.28.10 1 214 1.6E-64 T 13-10-2018 IPR027434 Homing endonuclease AP3564_08605 f9640c154f6141ec38c498b6f6e6facb 316 SUPERFAMILY SSF55608 120 221 9.64E-18 T 13-10-2018 IPR027434 Homing endonuclease AP3564_08605 f9640c154f6141ec38c498b6f6e6facb 316 Pfam PF10298 WhiA N-terminal LAGLIDADG-like domain 18 103 1.1E-34 T 13-10-2018 IPR018478 Sporulation transcription regulator WhiA, N-terminal domain AP3564_08605 f9640c154f6141ec38c498b6f6e6facb 316 Hamap MF_01420 Putative sporulation transcription regulator WhiA [whiA]. 3 307 34.946 T 13-10-2018 IPR003802 Sporulation regulator WhiA GO:0043937 AP3564_19470 cc709c62c33de0b108cdfe0fffefc64f 396 SUPERFAMILY SSF53067 1 194 1.21E-71 T 13-10-2018 AP3564_19470 cc709c62c33de0b108cdfe0fffefc64f 396 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 202 219 - T 13-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AP3564_19470 cc709c62c33de0b108cdfe0fffefc64f 396 Hamap MF_00020 Acetate kinase [ackA]. 1 396 195.359 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AP3564_19470 cc709c62c33de0b108cdfe0fffefc64f 396 PIRSF PIRSF000722 1 396 2.5E-152 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AP3564_19470 cc709c62c33de0b108cdfe0fffefc64f 396 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 4 15 - T 13-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AP3564_19470 cc709c62c33de0b108cdfe0fffefc64f 396 Gene3D G3DSA:3.30.420.40 195 396 1.9E-84 T 13-10-2018 AP3564_19470 cc709c62c33de0b108cdfe0fffefc64f 396 Gene3D G3DSA:3.30.420.40 2 194 9.4E-76 T 13-10-2018 AP3564_19470 cc709c62c33de0b108cdfe0fffefc64f 396 TIGRFAM TIGR00016 ackA: acetate kinase 2 394 2.9E-173 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AP3564_19470 cc709c62c33de0b108cdfe0fffefc64f 396 Pfam PF00871 Acetokinase family 3 388 1.4E-169 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AP3564_19470 cc709c62c33de0b108cdfe0fffefc64f 396 PRINTS PR00471 Acetate kinase family signature 299 312 2.2E-47 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AP3564_19470 cc709c62c33de0b108cdfe0fffefc64f 396 PRINTS PR00471 Acetate kinase family signature 321 337 2.2E-47 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AP3564_19470 cc709c62c33de0b108cdfe0fffefc64f 396 PRINTS PR00471 Acetate kinase family signature 4 15 2.2E-47 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AP3564_19470 cc709c62c33de0b108cdfe0fffefc64f 396 PRINTS PR00471 Acetate kinase family signature 202 223 2.2E-47 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AP3564_19470 cc709c62c33de0b108cdfe0fffefc64f 396 PRINTS PR00471 Acetate kinase family signature 375 387 2.2E-47 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AP3564_19470 cc709c62c33de0b108cdfe0fffefc64f 396 PRINTS PR00471 Acetate kinase family signature 172 185 2.2E-47 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AP3564_19470 cc709c62c33de0b108cdfe0fffefc64f 396 SUPERFAMILY SSF53067 157 393 2.16E-94 T 13-10-2018 AP3564_10030 baa9d7e04dd3590d5172a95926a67295 345 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 2 141 1.3E-31 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AP3564_10030 baa9d7e04dd3590d5172a95926a67295 345 SUPERFAMILY SSF55347 149 313 1.5E-53 T 13-10-2018 AP3564_10030 baa9d7e04dd3590d5172a95926a67295 345 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 1 339 42.578 T 13-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AP3564_10030 baa9d7e04dd3590d5172a95926a67295 345 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 144 160 - T 13-10-2018 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AP3564_10030 baa9d7e04dd3590d5172a95926a67295 345 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 2 345 3.2E-138 T 13-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AP3564_10030 baa9d7e04dd3590d5172a95926a67295 345 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 158 316 5.4E-29 T 13-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AP3564_10030 baa9d7e04dd3590d5172a95926a67295 345 SUPERFAMILY SSF51735 2 176 4.87E-44 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_10030 baa9d7e04dd3590d5172a95926a67295 345 Gene3D G3DSA:3.40.50.720 3 331 4.8E-126 T 13-10-2018 AP3564_10030 baa9d7e04dd3590d5172a95926a67295 345 SMART SM00859 2 141 3.6E-45 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AP3564_10030 baa9d7e04dd3590d5172a95926a67295 345 Gene3D G3DSA:3.30.360.10 147 313 4.8E-126 T 13-10-2018 AP3564_14765 76d0ea164076f076e164df2d6aa332bf 908 ProSitePatterns PS00450 Aconitase family signature 1. 442 458 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AP3564_14765 76d0ea164076f076e164df2d6aa332bf 908 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 23 905 0.0 T 13-10-2018 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-917937 AP3564_14765 76d0ea164076f076e164df2d6aa332bf 908 SUPERFAMILY SSF52016 646 905 3.14E-88 T 13-10-2018 AP3564_14765 76d0ea164076f076e164df2d6aa332bf 908 Pfam PF00330 Aconitase family (aconitate hydratase) 82 577 7.3E-178 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AP3564_14765 76d0ea164076f076e164df2d6aa332bf 908 PRINTS PR00415 Aconitase family signature 224 239 1.2E-41 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AP3564_14765 76d0ea164076f076e164df2d6aa332bf 908 PRINTS PR00415 Aconitase family signature 152 165 1.2E-41 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AP3564_14765 76d0ea164076f076e164df2d6aa332bf 908 PRINTS PR00415 Aconitase family signature 286 299 1.2E-41 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AP3564_14765 76d0ea164076f076e164df2d6aa332bf 908 PRINTS PR00415 Aconitase family signature 300 313 1.2E-41 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AP3564_14765 76d0ea164076f076e164df2d6aa332bf 908 PRINTS PR00415 Aconitase family signature 380 394 1.2E-41 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AP3564_14765 76d0ea164076f076e164df2d6aa332bf 908 PRINTS PR00415 Aconitase family signature 446 457 1.2E-41 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AP3564_14765 76d0ea164076f076e164df2d6aa332bf 908 PRINTS PR00415 Aconitase family signature 176 184 1.2E-41 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AP3564_14765 76d0ea164076f076e164df2d6aa332bf 908 PRINTS PR00415 Aconitase family signature 210 223 1.2E-41 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AP3564_14765 76d0ea164076f076e164df2d6aa332bf 908 PRINTS PR00415 Aconitase family signature 508 521 1.2E-41 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AP3564_14765 76d0ea164076f076e164df2d6aa332bf 908 ProSitePatterns PS01244 Aconitase family signature 2. 508 521 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AP3564_14765 76d0ea164076f076e164df2d6aa332bf 908 Gene3D G3DSA:1.10.1440.20 606 666 4.6E-24 T 13-10-2018 AP3564_14765 76d0ea164076f076e164df2d6aa332bf 908 Gene3D G3DSA:3.30.499.20 10 380 1.7E-160 T 13-10-2018 AP3564_14765 76d0ea164076f076e164df2d6aa332bf 908 Gene3D G3DSA:3.20.19.10 670 907 3.5E-104 T 13-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 AP3564_14765 76d0ea164076f076e164df2d6aa332bf 908 Gene3D G3DSA:3.30.499.10 381 605 5.5E-105 T 13-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 AP3564_14765 76d0ea164076f076e164df2d6aa332bf 908 Pfam PF00694 Aconitase C-terminal domain 707 834 5.6E-46 T 13-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 AP3564_14765 76d0ea164076f076e164df2d6aa332bf 908 SUPERFAMILY SSF53732 10 642 1.26E-229 T 13-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 AP3564_15055 aaa007687fb7999d23cd7c960473e030 893 Gene3D G3DSA:1.20.272.40 693 714 1.1E-103 T 13-10-2018 AP3564_15055 aaa007687fb7999d23cd7c960473e030 893 Pfam PF12513 Mitochondrial degradasome RNA helicase subunit C terminal 811 854 4.0E-5 T 13-10-2018 IPR022192 Mitochondrial degradasome RNA helicase subunit, C-terminal domain GO:0016817 AP3564_15055 aaa007687fb7999d23cd7c960473e030 893 Gene3D G3DSA:3.40.50.300 401 546 1.1E-103 T 13-10-2018 AP3564_15055 aaa007687fb7999d23cd7c960473e030 893 SMART SM00490 579 668 8.4E-21 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_15055 aaa007687fb7999d23cd7c960473e030 893 SMART SM00487 379 554 0.0023 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AP3564_15055 aaa007687fb7999d23cd7c960473e030 893 Gene3D G3DSA:3.40.50.300 547 692 1.1E-103 T 13-10-2018 AP3564_15055 aaa007687fb7999d23cd7c960473e030 893 Pfam PF00271 Helicase conserved C-terminal domain 565 668 1.8E-15 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_15055 aaa007687fb7999d23cd7c960473e030 893 SUPERFAMILY SSF52540 403 677 6.39E-33 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_13370 2ad3cfdaba5b5751bb2f89d9613f683d 539 Gene3D G3DSA:1.10.287.950 345 517 5.7E-11 T 13-10-2018 AP3564_13370 2ad3cfdaba5b5751bb2f89d9613f683d 539 SUPERFAMILY SSF158472 348 395 4.97E-8 T 13-10-2018 AP3564_13370 2ad3cfdaba5b5751bb2f89d9613f683d 539 SMART SM00304 345 397 2.7E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AP3564_13370 2ad3cfdaba5b5751bb2f89d9613f683d 539 Pfam PF00672 HAMP domain 353 393 2.0E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AP3564_13370 2ad3cfdaba5b5751bb2f89d9613f683d 539 SUPERFAMILY SSF58104 365 528 3.27E-5 T 13-10-2018 AP3564_07110 4d86b801306d23f16fea3b786481f751 487 Hamap MF_01670 Malonate-semialdehyde dehydrogenase [iolA]. 1 481 72.317 T 13-10-2018 IPR023510 Methylmalonate-semialdehyde dehydrogenase, Gram-positive bacteria GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642 AP3564_07110 4d86b801306d23f16fea3b786481f751 487 Gene3D G3DSA:3.40.309.10 252 450 7.2E-168 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AP3564_07110 4d86b801306d23f16fea3b786481f751 487 SUPERFAMILY SSF53720 6 480 9.69E-158 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AP3564_07110 4d86b801306d23f16fea3b786481f751 487 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 277 288 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AP3564_07110 4d86b801306d23f16fea3b786481f751 487 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 8 481 7.6E-183 T 13-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 AP3564_07110 4d86b801306d23f16fea3b786481f751 487 Pfam PF00171 Aldehyde dehydrogenase family 15 477 4.9E-161 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AP3564_07110 4d86b801306d23f16fea3b786481f751 487 Gene3D G3DSA:3.40.605.10 22 458 7.2E-168 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AP3564_04930 d354fc2009ab9e0e5cff19a2078ae3ff 488 PIRSF PIRSF000130 1 488 2.3E-215 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 AP3564_04930 d354fc2009ab9e0e5cff19a2078ae3ff 488 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 298 310 - T 13-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 AP3564_04930 d354fc2009ab9e0e5cff19a2078ae3ff 488 SMART SM00116 161 209 3.5E-9 T 13-10-2018 IPR000644 CBS domain AP3564_04930 d354fc2009ab9e0e5cff19a2078ae3ff 488 SMART SM00116 98 148 3.9E-8 T 13-10-2018 IPR000644 CBS domain AP3564_04930 d354fc2009ab9e0e5cff19a2078ae3ff 488 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 10 487 87.292 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 AP3564_04930 d354fc2009ab9e0e5cff19a2078ae3ff 488 SUPERFAMILY SSF51412 5 177 8.97E-34 T 13-10-2018 AP3564_04930 d354fc2009ab9e0e5cff19a2078ae3ff 488 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 10 456 1.0E-208 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 AP3564_04930 d354fc2009ab9e0e5cff19a2078ae3ff 488 SMART SM01240 9 474 0.0 T 13-10-2018 AP3564_04930 d354fc2009ab9e0e5cff19a2078ae3ff 488 SUPERFAMILY SSF51412 143 485 1.06E-128 T 13-10-2018 AP3564_04930 d354fc2009ab9e0e5cff19a2078ae3ff 488 Pfam PF00571 CBS domain 97 144 2.3E-7 T 13-10-2018 IPR000644 CBS domain AP3564_04930 d354fc2009ab9e0e5cff19a2078ae3ff 488 Pfam PF00571 CBS domain 153 204 2.1E-8 T 13-10-2018 IPR000644 CBS domain AP3564_04930 d354fc2009ab9e0e5cff19a2078ae3ff 488 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 10 474 1.6E-171 T 13-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 AP3564_04930 d354fc2009ab9e0e5cff19a2078ae3ff 488 Gene3D G3DSA:3.20.20.70 1 487 5.6E-232 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_00225 41236a5f00708826ce8ba432d095ffa4 170 SUPERFAMILY SSF75169 43 159 5.05E-15 T 13-10-2018 IPR027396 DsrEFH-like AP3564_00225 41236a5f00708826ce8ba432d095ffa4 170 TIGRFAM TIGR04044 MSMEG_0572_fam: MSMEG_0572 family protein 13 169 7.3E-69 T 13-10-2018 IPR023847 Conserved hypothetical protein CHP04044, MSMEG0572 AP3564_00225 41236a5f00708826ce8ba432d095ffa4 170 Gene3D G3DSA:3.40.1260.10 42 163 3.8E-10 T 13-10-2018 IPR027396 DsrEFH-like AP3564_00225 41236a5f00708826ce8ba432d095ffa4 170 Pfam PF02635 DsrE/DsrF-like family 43 151 1.0E-4 T 13-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein AP3564_11785 9f6702a8a4ee8a4fd90fe64700267cc9 634 SUPERFAMILY SSF81665 81 314 6.41E-14 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 AP3564_11785 9f6702a8a4ee8a4fd90fe64700267cc9 634 Gene3D G3DSA:3.40.50.1000 311 580 2.0E-85 T 13-10-2018 IPR023214 HAD superfamily AP3564_11785 9f6702a8a4ee8a4fd90fe64700267cc9 634 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 79 631 4.1E-190 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AP3564_11785 9f6702a8a4ee8a4fd90fe64700267cc9 634 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 79 389 1.4E-101 T 13-10-2018 AP3564_11785 9f6702a8a4ee8a4fd90fe64700267cc9 634 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 552 564 5.3E-28 T 13-10-2018 AP3564_11785 9f6702a8a4ee8a4fd90fe64700267cc9 634 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 529 548 5.3E-28 T 13-10-2018 AP3564_11785 9f6702a8a4ee8a4fd90fe64700267cc9 634 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 179 193 5.3E-28 T 13-10-2018 AP3564_11785 9f6702a8a4ee8a4fd90fe64700267cc9 634 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 476 486 5.3E-28 T 13-10-2018 AP3564_11785 9f6702a8a4ee8a4fd90fe64700267cc9 634 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 330 344 5.3E-28 T 13-10-2018 AP3564_11785 9f6702a8a4ee8a4fd90fe64700267cc9 634 Gene3D G3DSA:3.40.1110.10 341 461 2.0E-85 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AP3564_11785 9f6702a8a4ee8a4fd90fe64700267cc9 634 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 332 338 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 AP3564_11785 9f6702a8a4ee8a4fd90fe64700267cc9 634 SUPERFAMILY SSF81653 132 229 1.7E-29 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 AP3564_11785 9f6702a8a4ee8a4fd90fe64700267cc9 634 PRINTS PR00941 Cadmium-transporting ATPase signature 42 59 1.5E-18 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AP3564_11785 9f6702a8a4ee8a4fd90fe64700267cc9 634 PRINTS PR00941 Cadmium-transporting ATPase signature 134 150 1.5E-18 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AP3564_11785 9f6702a8a4ee8a4fd90fe64700267cc9 634 PRINTS PR00941 Cadmium-transporting ATPase signature 214 228 1.5E-18 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AP3564_11785 9f6702a8a4ee8a4fd90fe64700267cc9 634 PRINTS PR00941 Cadmium-transporting ATPase signature 114 134 1.5E-18 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AP3564_11785 9f6702a8a4ee8a4fd90fe64700267cc9 634 PRINTS PR00941 Cadmium-transporting ATPase signature 59 71 1.5E-18 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AP3564_11785 9f6702a8a4ee8a4fd90fe64700267cc9 634 PRINTS PR00941 Cadmium-transporting ATPase signature 195 211 1.5E-18 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AP3564_11785 9f6702a8a4ee8a4fd90fe64700267cc9 634 Gene3D G3DSA:2.70.150.20 123 234 1.6E-39 T 13-10-2018 AP3564_11785 9f6702a8a4ee8a4fd90fe64700267cc9 634 SUPERFAMILY SSF56784 329 628 3.93E-55 T 13-10-2018 IPR036412 HAD-like superfamily AP3564_11785 9f6702a8a4ee8a4fd90fe64700267cc9 634 Pfam PF00702 haloacid dehalogenase-like hydrolase 326 542 3.0E-39 T 13-10-2018 AP3564_11785 9f6702a8a4ee8a4fd90fe64700267cc9 634 ProSitePatterns PS01229 Hypothetical cof family signature 2. 529 551 - T 13-10-2018 AP3564_11785 9f6702a8a4ee8a4fd90fe64700267cc9 634 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 102 610 6.5E-80 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AP3564_11785 9f6702a8a4ee8a4fd90fe64700267cc9 634 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 95 631 2.8E-121 T 13-10-2018 AP3564_11785 9f6702a8a4ee8a4fd90fe64700267cc9 634 Pfam PF00122 E1-E2 ATPase 129 310 2.5E-53 T 13-10-2018 AP3564_17740 9321eff70e6a9d2e1547248a6177c34f 406 Gene3D G3DSA:2.30.40.20 24 77 2.6E-57 T 13-10-2018 AP3564_17740 9321eff70e6a9d2e1547248a6177c34f 406 Gene3D G3DSA:3.30.70.270 7 165 2.6E-57 T 13-10-2018 AP3564_17740 9321eff70e6a9d2e1547248a6177c34f 406 Gene3D G3DSA:1.10.150.20 177 230 2.2E-14 T 13-10-2018 AP3564_17740 9321eff70e6a9d2e1547248a6177c34f 406 Pfam PF11798 IMS family HHH motif 169 198 1.1E-8 T 13-10-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 AP3564_17740 9321eff70e6a9d2e1547248a6177c34f 406 SUPERFAMILY SSF100879 243 338 2.16E-22 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AP3564_17740 9321eff70e6a9d2e1547248a6177c34f 406 Pfam PF11799 impB/mucB/samB family C-terminal domain 244 343 1.5E-18 T 13-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AP3564_17740 9321eff70e6a9d2e1547248a6177c34f 406 SUPERFAMILY SSF56672 3 235 6.76E-83 T 13-10-2018 AP3564_17740 9321eff70e6a9d2e1547248a6177c34f 406 Hamap MF_01113 DNA polymerase IV [dinB]. 4 354 38.118 T 13-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 AP3564_17740 9321eff70e6a9d2e1547248a6177c34f 406 Pfam PF00817 impB/mucB/samB family 10 155 8.9E-50 T 13-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AP3564_17740 9321eff70e6a9d2e1547248a6177c34f 406 Gene3D G3DSA:3.30.1490.100 244 351 1.0E-22 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AP3564_03140 07d08321eea1475d56a663cb319d1bd2 140 SUPERFAMILY SSF54197 2 137 4.2E-50 T 13-10-2018 IPR036265 HIT-like superfamily AP3564_03140 07d08321eea1475d56a663cb319d1bd2 140 Gene3D G3DSA:1.20.5.1170 114 137 1.8E-7 T 13-10-2018 AP3564_03140 07d08321eea1475d56a663cb319d1bd2 140 Pfam PF01230 HIT domain 12 106 6.3E-30 T 13-10-2018 IPR001310 Histidine triad (HIT) protein AP3564_03140 07d08321eea1475d56a663cb319d1bd2 140 ProSitePatterns PS00892 HIT domain signature. 86 104 - T 13-10-2018 IPR019808 Histidine triad, conserved site AP3564_03140 07d08321eea1475d56a663cb319d1bd2 140 PRINTS PR00332 Histidine triad family signature 26 44 1.1E-17 T 13-10-2018 IPR001310 Histidine triad (HIT) protein AP3564_03140 07d08321eea1475d56a663cb319d1bd2 140 PRINTS PR00332 Histidine triad family signature 93 103 1.1E-17 T 13-10-2018 IPR001310 Histidine triad (HIT) protein AP3564_03140 07d08321eea1475d56a663cb319d1bd2 140 PRINTS PR00332 Histidine triad family signature 5 21 1.1E-17 T 13-10-2018 IPR001310 Histidine triad (HIT) protein AP3564_03140 07d08321eea1475d56a663cb319d1bd2 140 Gene3D G3DSA:3.30.428.10 1 113 1.4E-41 T 13-10-2018 IPR036265 HIT-like superfamily AP3564_10465 f412163ef74892f3c6ea28918289cd5f 632 Pfam PF00733 Asparagine synthase 240 610 5.5E-114 T 13-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 AP3564_10465 f412163ef74892f3c6ea28918289cd5f 632 SUPERFAMILY SSF56235 1 224 1.03E-62 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AP3564_10465 f412163ef74892f3c6ea28918289cd5f 632 Gene3D G3DSA:3.60.20.10 6 189 2.4E-65 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AP3564_10465 f412163ef74892f3c6ea28918289cd5f 632 PIRSF PIRSF001589 1 628 1.4E-202 T 13-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 AP3564_10465 f412163ef74892f3c6ea28918289cd5f 632 SUPERFAMILY SSF52402 229 605 1.16E-92 T 13-10-2018 AP3564_10465 f412163ef74892f3c6ea28918289cd5f 632 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 547 1.2E-175 T 13-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 AP3564_10465 f412163ef74892f3c6ea28918289cd5f 632 Pfam PF13537 Glutamine amidotransferase domain 51 168 1.3E-47 T 13-10-2018 IPR017932 Glutamine amidotransferase type 2 domain AP3564_01750 8451d6b65b6b18e18d876f657d34fbf0 487 SMART SM00725 36 181 0.0014 T 13-10-2018 IPR006635 NEAT domain AP3564_01750 8451d6b65b6b18e18d876f657d34fbf0 487 Gene3D G3DSA:2.60.40.1850 41 178 1.0E-21 T 13-10-2018 AP3564_01750 8451d6b65b6b18e18d876f657d34fbf0 487 Pfam PF07554 FIVAR domain 229 257 0.0047 T 13-10-2018 AP3564_01750 8451d6b65b6b18e18d876f657d34fbf0 487 Pfam PF07554 FIVAR domain 396 455 0.0085 T 13-10-2018 AP3564_01750 8451d6b65b6b18e18d876f657d34fbf0 487 Gene3D G3DSA:1.20.1270.90 184 265 1.2E-6 T 13-10-2018 AP3564_01750 8451d6b65b6b18e18d876f657d34fbf0 487 SUPERFAMILY SSF158911 38 179 4.05E-13 T 13-10-2018 IPR037250 NEAT domain superfamily AP3564_01750 8451d6b65b6b18e18d876f657d34fbf0 487 Pfam PF05031 Iron Transport-associated domain 36 175 3.4E-12 T 13-10-2018 IPR006635 NEAT domain AP3564_18585 e2b374bae326a37a354ba020e47cb373 239 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 197 223 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_18585 e2b374bae326a37a354ba020e47cb373 239 SUPERFAMILY SSF88946 7 122 1.31E-34 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AP3564_18585 e2b374bae326a37a354ba020e47cb373 239 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 78 91 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_18585 e2b374bae326a37a354ba020e47cb373 239 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 49 223 1.4E-30 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AP3564_18585 e2b374bae326a37a354ba020e47cb373 239 Gene3D G3DSA:1.10.10.10 160 238 1.4E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_18585 e2b374bae326a37a354ba020e47cb373 239 PIRSF PIRSF000770 3 239 2.5E-90 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_18585 e2b374bae326a37a354ba020e47cb373 239 Pfam PF04545 Sigma-70, region 4 173 223 2.0E-15 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 AP3564_18585 e2b374bae326a37a354ba020e47cb373 239 TIGRFAM TIGR02846 spore_sigmaK: RNA polymerase sigma-K factor 5 228 1.2E-114 T 13-10-2018 IPR014209 RNA polymerase sigma-K type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AP3564_18585 e2b374bae326a37a354ba020e47cb373 239 Pfam PF04542 Sigma-70 region 2 54 123 9.2E-17 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AP3564_18585 e2b374bae326a37a354ba020e47cb373 239 Gene3D G3DSA:1.20.120.1810 19 126 6.1E-25 T 13-10-2018 AP3564_18585 e2b374bae326a37a354ba020e47cb373 239 PRINTS PR00046 Major sigma-70 factor signature 78 91 1.7E-13 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_18585 e2b374bae326a37a354ba020e47cb373 239 PRINTS PR00046 Major sigma-70 factor signature 176 188 1.7E-13 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_18585 e2b374bae326a37a354ba020e47cb373 239 PRINTS PR00046 Major sigma-70 factor signature 212 223 1.7E-13 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_18585 e2b374bae326a37a354ba020e47cb373 239 PRINTS PR00046 Major sigma-70 factor signature 197 212 1.7E-13 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_18585 e2b374bae326a37a354ba020e47cb373 239 SUPERFAMILY SSF88659 139 225 7.2E-20 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AP3564_00795 880926f88dce9168cdf8164f5dfb3d12 579 Gene3D G3DSA:2.30.40.10 22 361 1.0E-77 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AP3564_00795 880926f88dce9168cdf8164f5dfb3d12 579 Gene3D G3DSA:3.20.20.140 81 324 1.0E-77 T 13-10-2018 AP3564_00795 880926f88dce9168cdf8164f5dfb3d12 579 SUPERFAMILY SSF51338 18 368 1.27E-11 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AP3564_00795 880926f88dce9168cdf8164f5dfb3d12 579 SUPERFAMILY SSF51556 47 338 1.11E-5 T 13-10-2018 IPR032466 Metal-dependent hydrolase AP3564_00795 880926f88dce9168cdf8164f5dfb3d12 579 Pfam PF01979 Amidohydrolase family 77 360 8.7E-16 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AP3564_00795 880926f88dce9168cdf8164f5dfb3d12 579 Pfam PF13382 Adenine deaminase C-terminal domain 425 570 3.5E-34 T 13-10-2018 IPR026912 Adenine deaminase C-terminal domain KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 AP3564_16360 72b019ae301cdd2ffde5a9fcded073da 77 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 51 77 1.0E-6 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 AP3564_16360 72b019ae301cdd2ffde5a9fcded073da 77 SUPERFAMILY SSF47336 2 77 1.96E-23 T 13-10-2018 IPR036736 ACP-like superfamily AP3564_16360 72b019ae301cdd2ffde5a9fcded073da 77 Gene3D G3DSA:1.10.1200.10 1 76 2.6E-29 T 13-10-2018 IPR036736 ACP-like superfamily AP3564_16360 72b019ae301cdd2ffde5a9fcded073da 77 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 2 76 1.7E-33 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 AP3564_16360 72b019ae301cdd2ffde5a9fcded073da 77 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 22.977 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 AP3564_16360 72b019ae301cdd2ffde5a9fcded073da 77 Pfam PF00550 Phosphopantetheine attachment site 6 73 7.6E-16 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain AP3564_16360 72b019ae301cdd2ffde5a9fcded073da 77 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site AP3564_09280 ace6012656e0cd1e20733090c28a8c30 87 Gene3D G3DSA:1.10.340.20 1 87 1.9E-36 T 13-10-2018 IPR023162 Apc36109-like domain superfamily AP3564_09280 ace6012656e0cd1e20733090c28a8c30 87 ProDom PD062625 YUGE 10 86 1.0E-11 T 13-10-2018 IPR015053 Protein of unknown function DUF1871 AP3564_09280 ace6012656e0cd1e20733090c28a8c30 87 Pfam PF08958 Domain of unknown function (DUF1871) 10 84 1.6E-33 T 13-10-2018 IPR015053 Protein of unknown function DUF1871 AP3564_09280 ace6012656e0cd1e20733090c28a8c30 87 SUPERFAMILY SSF116922 6 82 6.15E-26 T 13-10-2018 IPR023162 Apc36109-like domain superfamily AP3564_17770 751c765aa6c6e4978296d0b1d1d6ccc2 145 Pfam PF06491 Disulphide isomerase 8 142 8.5E-64 T 13-10-2018 IPR009474 Putative bacilliredoxin, YphP/YqiW family AP3564_17770 751c765aa6c6e4978296d0b1d1d6ccc2 145 Gene3D G3DSA:3.40.30.10 25 142 2.5E-56 T 13-10-2018 AP3564_17770 751c765aa6c6e4978296d0b1d1d6ccc2 145 TIGRFAM TIGR04191 YphP_YqiW: putative bacilliredoxin, YphP/YqiW family 8 142 2.3E-64 T 13-10-2018 IPR009474 Putative bacilliredoxin, YphP/YqiW family AP3564_13930 e57970ba4fc8dc5a3ef5478b9813c328 227 SMART SM00862 147 224 1.9E-26 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AP3564_13930 e57970ba4fc8dc5a3ef5478b9813c328 227 Pfam PF00072 Response regulator receiver domain 5 116 3.6E-32 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_13930 e57970ba4fc8dc5a3ef5478b9813c328 227 SMART SM00448 3 115 2.9E-49 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_13930 e57970ba4fc8dc5a3ef5478b9813c328 227 Gene3D G3DSA:3.40.50.2300 2 126 8.5E-42 T 13-10-2018 AP3564_13930 e57970ba4fc8dc5a3ef5478b9813c328 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 224 3.0E-26 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AP3564_13930 e57970ba4fc8dc5a3ef5478b9813c328 227 SUPERFAMILY SSF46894 121 225 1.08E-28 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AP3564_13930 e57970ba4fc8dc5a3ef5478b9813c328 227 Gene3D G3DSA:1.10.10.10 127 227 2.7E-35 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_13930 e57970ba4fc8dc5a3ef5478b9813c328 227 SUPERFAMILY SSF52172 3 132 2.99E-44 T 13-10-2018 IPR011006 CheY-like superfamily AP3564_09200 1ff28381938f1b3c2d831b88cb72a78b 293 SUPERFAMILY SSF48576 24 287 3.29E-31 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily AP3564_09200 1ff28381938f1b3c2d831b88cb72a78b 293 Pfam PF00348 Polyprenyl synthetase 33 203 9.9E-19 T 13-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 AP3564_09200 1ff28381938f1b3c2d831b88cb72a78b 293 Gene3D G3DSA:1.10.600.10 4 293 4.3E-33 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily AP3564_04960 847f9d60062952ee5fed353ce5ceb781 426 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 417 6.4E-186 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AP3564_04960 847f9d60062952ee5fed353ce5ceb781 426 Gene3D G3DSA:3.30.930.10 106 426 3.5E-128 T 13-10-2018 AP3564_04960 847f9d60062952ee5fed353ce5ceb781 426 PRINTS PR00981 Seryl-tRNA synthetase signature 276 289 2.7E-30 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AP3564_04960 847f9d60062952ee5fed353ce5ceb781 426 PRINTS PR00981 Seryl-tRNA synthetase signature 333 349 2.7E-30 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AP3564_04960 847f9d60062952ee5fed353ce5ceb781 426 PRINTS PR00981 Seryl-tRNA synthetase signature 264 276 2.7E-30 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AP3564_04960 847f9d60062952ee5fed353ce5ceb781 426 PRINTS PR00981 Seryl-tRNA synthetase signature 316 329 2.7E-30 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AP3564_04960 847f9d60062952ee5fed353ce5ceb781 426 PRINTS PR00981 Seryl-tRNA synthetase signature 351 367 2.7E-30 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AP3564_04960 847f9d60062952ee5fed353ce5ceb781 426 SUPERFAMILY SSF46589 1 113 4.24E-34 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 AP3564_04960 847f9d60062952ee5fed353ce5ceb781 426 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 223 400 7.8E-37 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_04960 847f9d60062952ee5fed353ce5ceb781 426 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 108 2.3E-35 T 13-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 AP3564_04960 847f9d60062952ee5fed353ce5ceb781 426 PIRSF PIRSF001529 1 426 3.9E-197 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AP3564_04960 847f9d60062952ee5fed353ce5ceb781 426 SUPERFAMILY SSF55681 117 423 9.33E-104 T 13-10-2018 AP3564_04960 847f9d60062952ee5fed353ce5ceb781 426 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 422 44.382 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AP3564_04960 847f9d60062952ee5fed353ce5ceb781 426 Gene3D G3DSA:1.10.287.40 1 105 2.8E-28 T 13-10-2018 AP3564_12235 01d3443e6a7ff34f04cc3c0c0461d5ee 449 Pfam PF01979 Amidohydrolase family 51 431 8.7E-26 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AP3564_12235 01d3443e6a7ff34f04cc3c0c0461d5ee 449 SUPERFAMILY SSF51556 55 377 3.08E-95 T 13-10-2018 IPR032466 Metal-dependent hydrolase AP3564_12235 01d3443e6a7ff34f04cc3c0c0461d5ee 449 Gene3D G3DSA:2.30.40.10 6 432 1.6E-141 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AP3564_12235 01d3443e6a7ff34f04cc3c0c0461d5ee 449 TIGRFAM TIGR03178 allantoinase: allantoinase 4 447 2.7E-166 T 13-10-2018 IPR017593 Allantoinase GO:0000256|GO:0004038|GO:0008270|GO:0050897 KEGG: 00230+3.5.2.5|MetaCyc: PWY-5697|MetaCyc: PWY-5698 AP3564_12235 01d3443e6a7ff34f04cc3c0c0461d5ee 449 Gene3D G3DSA:3.20.20.140 54 417 1.6E-141 T 13-10-2018 AP3564_12235 01d3443e6a7ff34f04cc3c0c0461d5ee 449 ProSitePatterns PS00482 Dihydroorotase signature 1. 58 66 - T 13-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_12235 01d3443e6a7ff34f04cc3c0c0461d5ee 449 Hamap MF_01645 Allantoinase [allB]. 2 449 47.974 T 13-10-2018 IPR017593 Allantoinase GO:0000256|GO:0004038|GO:0008270|GO:0050897 KEGG: 00230+3.5.2.5|MetaCyc: PWY-5697|MetaCyc: PWY-5698 AP3564_12235 01d3443e6a7ff34f04cc3c0c0461d5ee 449 SUPERFAMILY SSF51338 3 448 2.78E-28 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AP3564_18265 7c66b1989ecc69fd87c5508970502017 293 Gene3D G3DSA:3.30.70.120 203 278 1.0E-26 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal AP3564_18265 7c66b1989ecc69fd87c5508970502017 293 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 231 285 5.9E-24 T 13-10-2018 IPR019264 Domain of unknown function DUF2179 AP3564_18265 7c66b1989ecc69fd87c5508970502017 293 PIRSF PIRSF006483 1 292 1.9E-91 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT AP3564_18265 7c66b1989ecc69fd87c5508970502017 293 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 18 225 4.4E-62 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT AP3564_07840 85e04252ab7dda3ec9d80241abfef204 381 SUPERFAMILY SSF56796 2 381 6.67E-131 T 13-10-2018 AP3564_07840 85e04252ab7dda3ec9d80241abfef204 381 Pfam PF00465 Iron-containing alcohol dehydrogenase 10 373 3.6E-127 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 AP3564_07840 85e04252ab7dda3ec9d80241abfef204 381 Gene3D G3DSA:3.40.50.1970 1 181 1.7E-57 T 13-10-2018 AP3564_07840 85e04252ab7dda3ec9d80241abfef204 381 Gene3D G3DSA:1.20.1090.10 183 381 1.9E-75 T 13-10-2018 AP3564_03830 ba01ef37482dc1e282887591998f92d6 319 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 9 311 6.0E-99 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B AP3564_03830 ba01ef37482dc1e282887591998f92d6 319 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 27 290 2.3E-94 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B AP3564_03830 ba01ef37482dc1e282887591998f92d6 319 SUPERFAMILY SSF50891 181 296 3.07E-11 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily AP3564_03830 ba01ef37482dc1e282887591998f92d6 319 Gene3D G3DSA:2.40.100.10 179 314 4.2E-51 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily AP3564_03830 ba01ef37482dc1e282887591998f92d6 319 SMART SM00797 26 306 6.4E-147 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B AP3564_03765 cb84ede90f608eafb3b0aaca53ee8ac5 915 SUPERFAMILY SSF52540 661 911 2.23E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_03765 cb84ede90f608eafb3b0aaca53ee8ac5 915 SUPERFAMILY SSF52540 424 656 2.38E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_03765 cb84ede90f608eafb3b0aaca53ee8ac5 915 SMART SM00487 438 625 1.6E-36 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AP3564_03765 cb84ede90f608eafb3b0aaca53ee8ac5 915 Gene3D G3DSA:3.40.50.10810 443 657 1.6E-69 T 13-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily AP3564_03765 cb84ede90f608eafb3b0aaca53ee8ac5 915 Pfam PF12419 SNF2 Helicase protein 263 389 4.3E-35 T 13-10-2018 IPR022138 Helicase SWF/SNF-related AP3564_03765 cb84ede90f608eafb3b0aaca53ee8ac5 915 Pfam PF00176 SNF2 family N-terminal domain 461 726 2.8E-60 T 13-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 AP3564_03765 cb84ede90f608eafb3b0aaca53ee8ac5 915 Gene3D G3DSA:1.20.120.850 680 903 1.4E-88 T 13-10-2018 AP3564_03765 cb84ede90f608eafb3b0aaca53ee8ac5 915 SMART SM00490 771 854 2.6E-24 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_03765 cb84ede90f608eafb3b0aaca53ee8ac5 915 Pfam PF00271 Helicase conserved C-terminal domain 744 854 1.5E-21 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_03765 cb84ede90f608eafb3b0aaca53ee8ac5 915 Gene3D G3DSA:3.40.50.300 666 868 1.4E-88 T 13-10-2018 AP3564_10000 524b429176dc3fc7897c27c663700957 92 Pfam PF00381 PTS HPr component phosphorylation site 21 81 1.1E-8 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like AP3564_10000 524b429176dc3fc7897c27c663700957 92 SUPERFAMILY SSF55594 21 84 1.7E-9 T 13-10-2018 IPR035895 HPr-like superfamily AP3564_10000 524b429176dc3fc7897c27c663700957 92 Gene3D G3DSA:3.30.1340.10 1 83 5.2E-11 T 13-10-2018 IPR035895 HPr-like superfamily AP3564_18975 fd0f5595555a2bb964bc19cd0811cd1c 380 Pfam PF01476 LysM domain 330 373 1.2E-7 T 13-10-2018 IPR018392 LysM domain AP3564_18975 fd0f5595555a2bb964bc19cd0811cd1c 380 SMART SM00257 329 373 8.2E-6 T 13-10-2018 IPR018392 LysM domain AP3564_18975 fd0f5595555a2bb964bc19cd0811cd1c 380 Gene3D G3DSA:3.10.350.10 317 380 1.7E-11 T 13-10-2018 IPR036779 LysM domain superfamily AP3564_18975 fd0f5595555a2bb964bc19cd0811cd1c 380 TIGRFAM TIGR02907 spore_VI_D: stage VI sporulation protein D 9 373 9.1E-80 T 13-10-2018 IPR014256 Sporulation stage VI, protein D AP3564_18975 fd0f5595555a2bb964bc19cd0811cd1c 380 SUPERFAMILY SSF54106 328 373 1.03E-8 T 13-10-2018 AP3564_08940 c35f432e4c77f08f63e3ff5f87c2e9e0 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 36 222 9.0E-21 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AP3564_08940 c35f432e4c77f08f63e3ff5f87c2e9e0 222 Gene3D G3DSA:1.10.3720.10 10 222 4.1E-46 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_08940 c35f432e4c77f08f63e3ff5f87c2e9e0 222 SUPERFAMILY SSF161098 11 209 2.22E-43 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_14145 1d4b763dd475d11fe024318eb0535d37 390 Gene3D G3DSA:3.40.640.10 55 287 9.6E-137 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_14145 1d4b763dd475d11fe024318eb0535d37 390 Gene3D G3DSA:3.90.1150.10 34 376 9.6E-137 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_14145 1d4b763dd475d11fe024318eb0535d37 390 SUPERFAMILY SSF53383 6 388 1.5E-112 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_14145 1d4b763dd475d11fe024318eb0535d37 390 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 234 243 - T 13-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 AP3564_14145 1d4b763dd475d11fe024318eb0535d37 390 TIGRFAM TIGR00858 bioF: 8-amino-7-oxononanoate synthase 19 379 8.0E-150 T 13-10-2018 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 AP3564_14145 1d4b763dd475d11fe024318eb0535d37 390 Pfam PF00155 Aminotransferase class I and II 40 378 6.6E-68 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AP3564_12425 1958445819fe2601ef41ffa31a25eed7 291 Pfam PF00005 ABC transporter 21 158 3.6E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_12425 1958445819fe2601ef41ffa31a25eed7 291 SMART SM00382 28 207 3.8E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_12425 1958445819fe2601ef41ffa31a25eed7 291 Gene3D G3DSA:3.40.50.300 6 228 9.4E-46 T 13-10-2018 AP3564_12425 1958445819fe2601ef41ffa31a25eed7 291 SUPERFAMILY SSF52540 4 234 4.76E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_02405 d575ce336be73bd6d48c8e3c145e8f9f 134 Pfam PF07885 Ion channel 45 127 8.5E-9 T 13-10-2018 IPR013099 Potassium channel domain AP3564_02405 d575ce336be73bd6d48c8e3c145e8f9f 134 Gene3D G3DSA:1.10.287.70 20 130 1.8E-12 T 13-10-2018 AP3564_02405 d575ce336be73bd6d48c8e3c145e8f9f 134 SUPERFAMILY SSF81324 32 125 1.44E-12 T 13-10-2018 AP3564_12725 7bf038dd1f568cf9b41d7ad4d26a1ae2 199 Pfam PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) 25 155 2.4E-16 T 13-10-2018 IPR019076 Sporulation lipoprotein YhcN/YlaJ-like AP3564_12725 7bf038dd1f568cf9b41d7ad4d26a1ae2 199 TIGRFAM TIGR02898 spore_YhcN_YlaJ: sporulation lipoprotein, YhcN/YlaJ family 5 157 6.0E-43 T 13-10-2018 IPR014247 Sporulation lipoprotein YhcN/YlaJ GO:0030435 AP3564_16930 98a776b31b42dcb73f170b0585e525b7 104 Pfam PF14179 YppG-like protein 17 102 1.2E-22 T 13-10-2018 IPR025555 YppG-like protein AP3564_13570 47838db53b0c5ca44f841b3f643753c0 66 SMART SM00357 3 66 7.6E-29 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 AP3564_13570 47838db53b0c5ca44f841b3f643753c0 66 PRINTS PR00050 Cold shock protein signature 39 57 3.2E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AP3564_13570 47838db53b0c5ca44f841b3f643753c0 66 PRINTS PR00050 Cold shock protein signature 24 33 3.2E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AP3564_13570 47838db53b0c5ca44f841b3f643753c0 66 PRINTS PR00050 Cold shock protein signature 4 19 3.2E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AP3564_13570 47838db53b0c5ca44f841b3f643753c0 66 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 3.6E-29 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AP3564_13570 47838db53b0c5ca44f841b3f643753c0 66 PIRSF PIRSF002599 1 66 2.2E-23 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 AP3564_13570 47838db53b0c5ca44f841b3f643753c0 66 Gene3D G3DSA:2.40.50.140 1 66 1.7E-30 T 13-10-2018 AP3564_13570 47838db53b0c5ca44f841b3f643753c0 66 SUPERFAMILY SSF50249 1 64 3.23E-25 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_13570 47838db53b0c5ca44f841b3f643753c0 66 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 33 - T 13-10-2018 IPR019844 Cold-shock conserved site AP3564_16245 63f0cb3da8a619602b9cebcada0eb826 303 Gene3D G3DSA:1.10.443.10 111 294 1.3E-59 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AP3564_16245 63f0cb3da8a619602b9cebcada0eb826 303 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 6 300 54.991 T 13-10-2018 IPR023009 Tyrosine recombinase XerC/XerD AP3564_16245 63f0cb3da8a619602b9cebcada0eb826 303 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 8 90 6.6E-23 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 AP3564_16245 63f0cb3da8a619602b9cebcada0eb826 303 Pfam PF00589 Phage integrase family 113 286 1.3E-50 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AP3564_16245 63f0cb3da8a619602b9cebcada0eb826 303 TIGRFAM TIGR02224 recomb_XerC: tyrosine recombinase XerC 11 301 1.7E-106 T 13-10-2018 IPR011931 Tyrosine recombinase XerC GO:0003677|GO:0006310|GO:0007059|GO:0015074|GO:0051301 AP3564_16245 63f0cb3da8a619602b9cebcada0eb826 303 SUPERFAMILY SSF56349 4 294 1.65E-59 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AP3564_16245 63f0cb3da8a619602b9cebcada0eb826 303 Gene3D G3DSA:1.10.150.130 5 98 7.6E-25 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal AP3564_18315 f019d84496f429651626b92dcbc037ee 598 Pfam PF01807 CHC2 zinc finger 6 98 6.0E-39 T 13-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 AP3564_18315 f019d84496f429651626b92dcbc037ee 598 TIGRFAM TIGR01391 dnaG: DNA primase 4 421 6.2E-151 T 13-10-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 AP3564_18315 f019d84496f429651626b92dcbc037ee 598 SUPERFAMILY SSF48024 458 557 4.18E-6 T 13-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 AP3564_18315 f019d84496f429651626b92dcbc037ee 598 Gene3D G3DSA:1.10.860.10 462 558 3.5E-35 T 13-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal AP3564_18315 f019d84496f429651626b92dcbc037ee 598 Gene3D G3DSA:3.40.1360.10 245 367 4.8E-38 T 13-10-2018 AP3564_18315 f019d84496f429651626b92dcbc037ee 598 SUPERFAMILY SSF56731 118 427 4.18E-101 T 13-10-2018 AP3564_18315 f019d84496f429651626b92dcbc037ee 598 SMART SM00493 263 334 4.7E-14 T 13-10-2018 IPR006171 TOPRIM domain AP3564_18315 f019d84496f429651626b92dcbc037ee 598 SMART SM00400 36 90 6.9E-32 T 13-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 AP3564_18315 f019d84496f429651626b92dcbc037ee 598 Gene3D G3DSA:3.90.980.10 113 244 7.4E-49 T 13-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily AP3564_18315 f019d84496f429651626b92dcbc037ee 598 Gene3D G3DSA:3.90.580.10 1 99 4.4E-43 T 13-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 AP3564_18315 f019d84496f429651626b92dcbc037ee 598 SUPERFAMILY SSF57783 4 98 6.97E-37 T 13-10-2018 AP3564_18315 f019d84496f429651626b92dcbc037ee 598 Pfam PF13155 Toprim-like 266 351 1.5E-20 T 13-10-2018 AP3564_18315 f019d84496f429651626b92dcbc037ee 598 Pfam PF10410 DnaB-helicase binding domain of primase 372 426 1.6E-13 T 13-10-2018 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 AP3564_18315 f019d84496f429651626b92dcbc037ee 598 Pfam PF08275 DNA primase catalytic core, N-terminal domain 129 256 7.8E-44 T 13-10-2018 IPR013264 DNA primase, catalytic core, N-terminal AP3564_18315 f019d84496f429651626b92dcbc037ee 598 PIRSF PIRSF002811 2 598 3.3E-196 T 13-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 AP3564_18315 f019d84496f429651626b92dcbc037ee 598 Hamap MF_00974 DNA primase [dnaG]. 4 588 29.634 T 13-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 AP3564_19130 44a95e2b70b2e57c798cfd314e85097e 254 Gene3D G3DSA:1.10.1060.10 113 249 7.6E-29 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AP3564_19130 44a95e2b70b2e57c798cfd314e85097e 254 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 154 165 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AP3564_19130 44a95e2b70b2e57c798cfd314e85097e 254 SUPERFAMILY SSF54292 2 111 1.53E-24 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AP3564_19130 44a95e2b70b2e57c798cfd314e85097e 254 Gene3D G3DSA:3.10.20.30 1 111 2.8E-32 T 13-10-2018 IPR012675 Beta-grasp domain superfamily AP3564_19130 44a95e2b70b2e57c798cfd314e85097e 254 SUPERFAMILY SSF46548 113 238 2.96E-27 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AP3564_19130 44a95e2b70b2e57c798cfd314e85097e 254 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 11 233 1.4E-41 T 13-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 AP3564_19130 44a95e2b70b2e57c798cfd314e85097e 254 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 9 116 1.0E-29 T 13-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 AP3564_19130 44a95e2b70b2e57c798cfd314e85097e 254 Pfam PF13183 4Fe-4S dicluster domain 150 225 7.2E-9 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AP3564_04020 9c0e2fe362b37dde4be05965ac05afca 425 TIGRFAM TIGR00767 rho: transcription termination factor Rho 5 414 3.2E-207 T 13-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 AP3564_04020 9c0e2fe362b37dde4be05965ac05afca 425 Gene3D G3DSA:1.10.720.10 1 48 9.6E-21 T 13-10-2018 AP3564_04020 9c0e2fe362b37dde4be05965ac05afca 425 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 416 225.673 T 13-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 AP3564_04020 9c0e2fe362b37dde4be05965ac05afca 425 SMART SM00357 55 120 8.3E-20 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 AP3564_04020 9c0e2fe362b37dde4be05965ac05afca 425 SMART SM00959 8 50 3.2E-14 T 13-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 AP3564_04020 9c0e2fe362b37dde4be05965ac05afca 425 Pfam PF07497 Rho termination factor, RNA-binding domain 54 127 4.5E-31 T 13-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 AP3564_04020 9c0e2fe362b37dde4be05965ac05afca 425 SUPERFAMILY SSF52540 92 370 1.51E-67 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_04020 9c0e2fe362b37dde4be05965ac05afca 425 SUPERFAMILY SSF50249 52 127 3.64E-24 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_04020 9c0e2fe362b37dde4be05965ac05afca 425 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 158 362 2.2E-18 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AP3564_04020 9c0e2fe362b37dde4be05965ac05afca 425 Gene3D G3DSA:2.40.50.140 50 125 1.2E-28 T 13-10-2018 AP3564_04020 9c0e2fe362b37dde4be05965ac05afca 425 SMART SM00382 169 354 4.0E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_04020 9c0e2fe362b37dde4be05965ac05afca 425 Pfam PF07498 Rho termination factor, N-terminal domain 9 49 1.3E-14 T 13-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 AP3564_04020 9c0e2fe362b37dde4be05965ac05afca 425 Gene3D G3DSA:3.40.50.300 132 414 1.2E-124 T 13-10-2018 AP3564_04020 9c0e2fe362b37dde4be05965ac05afca 425 SUPERFAMILY SSF68912 5 49 2.63E-10 T 13-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily AP3564_16005 f333b00d6c222c3d95f1cbb71b936d66 94 Gene3D G3DSA:3.30.1230.10 1 93 9.5E-36 T 13-10-2018 IPR035931 YlxR-like superfamily AP3564_16005 f333b00d6c222c3d95f1cbb71b936d66 94 SUPERFAMILY SSF64376 5 88 1.31E-28 T 13-10-2018 IPR035931 YlxR-like superfamily AP3564_16005 f333b00d6c222c3d95f1cbb71b936d66 94 Pfam PF04296 Protein of unknown function (DUF448) 10 83 1.9E-27 T 13-10-2018 IPR007393 Domain of unknown function DUF448 AP3564_12020 05df8d9aa911ce8ceb4b556a4a825728 225 Gene3D G3DSA:1.20.910.10 1 225 2.3E-69 T 13-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 AP3564_12020 05df8d9aa911ce8ceb4b556a4a825728 225 TIGRFAM TIGR04306 salvage_TenA: thiaminase II 10 213 2.0E-70 T 13-10-2018 IPR027574 Thiaminase II GO:0006772|GO:0050334 KEGG: 00730+3.5.99.2|MetaCyc: PWY-6899|MetaCyc: PWY-7356 AP3564_12020 05df8d9aa911ce8ceb4b556a4a825728 225 SUPERFAMILY SSF48613 1 213 2.37E-71 T 13-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 AP3564_12020 05df8d9aa911ce8ceb4b556a4a825728 225 Pfam PF03070 TENA/THI-4/PQQC family 8 215 3.2E-57 T 13-10-2018 IPR004305 Thiaminase-2/PQQC AP3564_11555 cb686de6f5afdfa6c5d4236d89e6744a 280 TIGRFAM TIGR02772 Ku_bact: Ku protein 1 255 1.3E-93 T 13-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type AP3564_11555 cb686de6f5afdfa6c5d4236d89e6744a 280 SMART SM00559 52 181 1.2E-39 T 13-10-2018 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571|Reactome: R-HSA-6798695 AP3564_11555 cb686de6f5afdfa6c5d4236d89e6744a 280 Pfam PF02735 Ku70/Ku80 beta-barrel domain 11 191 1.5E-36 T 13-10-2018 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571|Reactome: R-HSA-6798695 AP3564_11555 cb686de6f5afdfa6c5d4236d89e6744a 280 Hamap MF_01875 Non-homologous end joining protein Ku [ku]. 1 253 32.307 T 13-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type AP3564_11555 cb686de6f5afdfa6c5d4236d89e6744a 280 SUPERFAMILY SSF100939 2 255 7.06E-49 T 13-10-2018 IPR016194 SPOC-like, C-terminal domain superfamily AP3564_11555 cb686de6f5afdfa6c5d4236d89e6744a 280 PIRSF PIRSF006493 1 280 6.6E-103 T 13-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type AP3564_11555 cb686de6f5afdfa6c5d4236d89e6744a 280 Gene3D G3DSA:2.40.290.10 2 174 9.2E-16 T 13-10-2018 IPR016194 SPOC-like, C-terminal domain superfamily AP3564_15170 70de74ad24c1e5176bca55e83fb0ca4e 1074 Gene3D G3DSA:3.20.20.80 534 795 1.4E-6 T 13-10-2018 AP3564_15170 70de74ad24c1e5176bca55e83fb0ca4e 1074 ProSitePatterns PS00277 Staphylococcal enterotoxin/Streptococcal pyrogenic exotoxin signature 1. 127 136 - T 13-10-2018 IPR006126 Staphylococcal enterotoxin/Streptococcal pyrogenic exotoxin, conserved site GO:0005576|GO:0009405 AP3564_15170 70de74ad24c1e5176bca55e83fb0ca4e 1074 SUPERFAMILY SSF51445 407 764 9.28E-12 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily AP3564_15170 70de74ad24c1e5176bca55e83fb0ca4e 1074 Gene3D G3DSA:3.20.20.80 396 511 2.4E-5 T 13-10-2018 AP3564_10005 6b384e3a6290f45ffbda96d40a28e6c1 292 Gene3D G3DSA:3.30.1180.10 156 287 2.3E-51 T 13-10-2018 AP3564_10005 6b384e3a6290f45ffbda96d40a28e6c1 292 Pfam PF02645 Uncharacterised protein, DegV family COG1307 3 282 1.4E-86 T 13-10-2018 IPR003797 DegV AP3564_10005 6b384e3a6290f45ffbda96d40a28e6c1 292 SUPERFAMILY SSF82549 1 283 1.67E-91 T 13-10-2018 AP3564_10005 6b384e3a6290f45ffbda96d40a28e6c1 292 Gene3D G3DSA:2.20.28.50 28 62 1.0E-45 T 13-10-2018 AP3564_10005 6b384e3a6290f45ffbda96d40a28e6c1 292 Gene3D G3DSA:3.40.50.10440 5 139 1.0E-45 T 13-10-2018 AP3564_10005 6b384e3a6290f45ffbda96d40a28e6c1 292 TIGRFAM TIGR00762 DegV: EDD domain protein, DegV family 3 281 4.9E-94 T 13-10-2018 IPR003797 DegV AP3564_11625 0005e949c347ef54ae3d7e85ab3d9e7f 477 SUPERFAMILY SSF46548 272 393 7.32E-17 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AP3564_11625 0005e949c347ef54ae3d7e85ab3d9e7f 477 Hamap MF_02103 Lactate utilization protein B [lutB]. 1 475 68.109 T 13-10-2018 IPR022825 Lactate utilization protein B AP3564_11625 0005e949c347ef54ae3d7e85ab3d9e7f 477 Gene3D G3DSA:3.40.50.10420 132 295 1.9E-14 T 13-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily AP3564_11625 0005e949c347ef54ae3d7e85ab3d9e7f 477 Pfam PF11870 Domain of unknown function (DUF3390) 384 471 1.5E-20 T 13-10-2018 IPR024569 4Fe-4S binding protein, C-terminal AP3564_11625 0005e949c347ef54ae3d7e85ab3d9e7f 477 TIGRFAM TIGR00273 TIGR00273: iron-sulfur cluster-binding protein 18 455 1.5E-213 T 13-10-2018 IPR004452 4Fe-4S binding protein GO:0019516 AP3564_11625 0005e949c347ef54ae3d7e85ab3d9e7f 477 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 313 324 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AP3564_11625 0005e949c347ef54ae3d7e85ab3d9e7f 477 Pfam PF02589 LUD domain 71 295 3.3E-59 T 13-10-2018 IPR003741 LUD domain AP3564_11625 0005e949c347ef54ae3d7e85ab3d9e7f 477 Pfam PF13183 4Fe-4S dicluster domain 311 377 3.2E-9 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AP3564_11625 0005e949c347ef54ae3d7e85ab3d9e7f 477 SUPERFAMILY SSF100950 64 296 7.11E-41 T 13-10-2018 IPR037171 NagB/RpiA transferase-like AP3564_07755 b8f7aaf9d480ad626c88d478975113ea 210 Gene3D G3DSA:2.160.10.10 92 207 2.6E-29 T 13-10-2018 AP3564_07755 b8f7aaf9d480ad626c88d478975113ea 210 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 104 131 3.6E-5 T 13-10-2018 IPR001451 Hexapeptide repeat AP3564_07755 b8f7aaf9d480ad626c88d478975113ea 210 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 157 191 3.9E-7 T 13-10-2018 IPR001451 Hexapeptide repeat AP3564_07755 b8f7aaf9d480ad626c88d478975113ea 210 Gene3D G3DSA:3.40.50.20 1 91 4.9E-13 T 13-10-2018 AP3564_07755 b8f7aaf9d480ad626c88d478975113ea 210 TIGRFAM TIGR03570 NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family 6 206 3.5E-72 T 13-10-2018 IPR020019 Sialic acid O-acyltransferase NeuD-like AP3564_07755 b8f7aaf9d480ad626c88d478975113ea 210 SUPERFAMILY SSF51161 4 208 2.22E-44 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily AP3564_07755 b8f7aaf9d480ad626c88d478975113ea 210 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 166 194 - T 13-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AP3564_18740 9132191fcb391c48034b1cfe5f77658d 740 Gene3D G3DSA:1.20.1640.10 249 421 1.2E-11 T 13-10-2018 AP3564_18740 9132191fcb391c48034b1cfe5f77658d 740 Gene3D G3DSA:1.20.1640.10 553 740 1.0E-7 T 13-10-2018 AP3564_18740 9132191fcb391c48034b1cfe5f77658d 740 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 447 731 25.628 T 13-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 AP3564_18740 9132191fcb391c48034b1cfe5f77658d 740 PRINTS PR01755 Bacterial translocase SecF protein signature 632 650 5.3E-24 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AP3564_18740 9132191fcb391c48034b1cfe5f77658d 740 PRINTS PR01755 Bacterial translocase SecF protein signature 474 489 5.3E-24 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AP3564_18740 9132191fcb391c48034b1cfe5f77658d 740 PRINTS PR01755 Bacterial translocase SecF protein signature 584 598 5.3E-24 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AP3564_18740 9132191fcb391c48034b1cfe5f77658d 740 PRINTS PR01755 Bacterial translocase SecF protein signature 668 683 5.3E-24 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AP3564_18740 9132191fcb391c48034b1cfe5f77658d 740 SUPERFAMILY SSF82866 215 409 7.46E-38 T 13-10-2018 AP3564_18740 9132191fcb391c48034b1cfe5f77658d 740 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 34 405 1.7E-109 T 13-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 AP3564_18740 9132191fcb391c48034b1cfe5f77658d 740 Gene3D G3DSA:3.30.70.3400 34 123 3.2E-22 T 13-10-2018 AP3564_18740 9132191fcb391c48034b1cfe5f77658d 740 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 2 420 32.897 T 13-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 AP3564_18740 9132191fcb391c48034b1cfe5f77658d 740 Pfam PF07549 SecD/SecF GG Motif 469 493 8.2E-6 T 13-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site AP3564_18740 9132191fcb391c48034b1cfe5f77658d 740 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 186 398 9.9E-59 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AP3564_18740 9132191fcb391c48034b1cfe5f77658d 740 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 554 717 1.1E-47 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AP3564_18740 9132191fcb391c48034b1cfe5f77658d 740 Pfam PF02355 Protein export membrane protein 553 728 2.2E-63 T 13-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial AP3564_18740 9132191fcb391c48034b1cfe5f77658d 740 Pfam PF02355 Protein export membrane protein 240 407 3.4E-16 T 13-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial AP3564_18740 9132191fcb391c48034b1cfe5f77658d 740 SUPERFAMILY SSF82866 526 731 7.19E-35 T 13-10-2018 AP3564_18740 9132191fcb391c48034b1cfe5f77658d 740 Gene3D G3DSA:1.20.1640.10 422 473 1.2E-11 T 13-10-2018 AP3564_18740 9132191fcb391c48034b1cfe5f77658d 740 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 476 720 3.9E-66 T 13-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 AP3564_18740 9132191fcb391c48034b1cfe5f77658d 740 Gene3D G3DSA:3.30.70.1320 236 245 1.2E-11 T 13-10-2018 AP3564_03730 9061b658d21bf71bed30ac920c998dd8 423 Gene3D G3DSA:3.40.50.720 237 422 1.2E-56 T 13-10-2018 AP3564_03730 9061b658d21bf71bed30ac920c998dd8 423 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 6 188 3.8E-60 T 13-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AP3564_03730 9061b658d21bf71bed30ac920c998dd8 423 SMART SM00984 315 413 2.5E-25 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AP3564_03730 9061b658d21bf71bed30ac920c998dd8 423 PIRSF PIRSF500136 1 422 3.3E-152 T 13-10-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 AP3564_03730 9061b658d21bf71bed30ac920c998dd8 423 SUPERFAMILY SSF51735 5 199 2.19E-50 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_03730 9061b658d21bf71bed30ac920c998dd8 423 Gene3D G3DSA:3.40.50.720 1 203 2.1E-69 T 13-10-2018 AP3564_03730 9061b658d21bf71bed30ac920c998dd8 423 Gene3D G3DSA:1.20.5.100 204 235 4.1E-5 T 13-10-2018 AP3564_03730 9061b658d21bf71bed30ac920c998dd8 423 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 205 292 3.9E-27 T 13-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AP3564_03730 9061b658d21bf71bed30ac920c998dd8 423 SUPERFAMILY SSF48179 205 297 2.55E-28 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AP3564_03730 9061b658d21bf71bed30ac920c998dd8 423 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 346 407 1.3E-4 T 13-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal AP3564_03730 9061b658d21bf71bed30ac920c998dd8 423 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 315 411 5.8E-20 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AP3564_03730 9061b658d21bf71bed30ac920c998dd8 423 SUPERFAMILY SSF52413 301 414 1.44E-26 T 13-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 AP3564_03730 9061b658d21bf71bed30ac920c998dd8 423 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 5 409 2.0E-128 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AP3564_03730 9061b658d21bf71bed30ac920c998dd8 423 PIRSF PIRSF000124 5 421 3.4E-83 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AP3564_05530 55bf046889ff8fb5a51494884ce56814 401 Gene3D G3DSA:1.20.81.30 254 367 2.8E-28 T 13-10-2018 AP3564_05530 55bf046889ff8fb5a51494884ce56814 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 63 75 1.7E-19 T 13-10-2018 IPR003004 GspF/PilC family AP3564_05530 55bf046889ff8fb5a51494884ce56814 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 382 401 1.7E-19 T 13-10-2018 IPR003004 GspF/PilC family AP3564_05530 55bf046889ff8fb5a51494884ce56814 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 162 190 1.7E-19 T 13-10-2018 IPR003004 GspF/PilC family AP3564_05530 55bf046889ff8fb5a51494884ce56814 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 366 380 1.7E-19 T 13-10-2018 IPR003004 GspF/PilC family AP3564_05530 55bf046889ff8fb5a51494884ce56814 401 Pfam PF00482 Type II secretion system (T2SS), protein F 272 393 3.0E-28 T 13-10-2018 IPR018076 Type II secretion system F domain AP3564_05530 55bf046889ff8fb5a51494884ce56814 401 Pfam PF00482 Type II secretion system (T2SS), protein F 67 190 1.4E-32 T 13-10-2018 IPR018076 Type II secretion system F domain AP3564_05530 55bf046889ff8fb5a51494884ce56814 401 Gene3D G3DSA:1.20.81.30 53 168 1.2E-31 T 13-10-2018 AP3564_00980 4765bc9130c7a5d5556dff4a76c1f8fc 214 Gene3D G3DSA:3.40.50.300 2 210 3.4E-28 T 13-10-2018 AP3564_00980 4765bc9130c7a5d5556dff4a76c1f8fc 214 Pfam PF13614 AAA domain 20 112 3.1E-15 T 13-10-2018 IPR025669 AAA domain AP3564_00980 4765bc9130c7a5d5556dff4a76c1f8fc 214 SUPERFAMILY SSF52540 19 205 7.44E-14 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_14200 18c7cb8c3f7e19aa995a2580e8b60258 425 Pfam PF01548 Transposase 19 179 3.9E-35 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_14200 18c7cb8c3f7e19aa995a2580e8b60258 425 Pfam PF02371 Transposase IS116/IS110/IS902 family 287 371 2.4E-23 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_07600 18c7cb8c3f7e19aa995a2580e8b60258 425 Pfam PF01548 Transposase 19 179 3.9E-35 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_07600 18c7cb8c3f7e19aa995a2580e8b60258 425 Pfam PF02371 Transposase IS116/IS110/IS902 family 287 371 2.4E-23 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_13350 18c7cb8c3f7e19aa995a2580e8b60258 425 Pfam PF01548 Transposase 19 179 3.9E-35 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_13350 18c7cb8c3f7e19aa995a2580e8b60258 425 Pfam PF02371 Transposase IS116/IS110/IS902 family 287 371 2.4E-23 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_10340 0ca707a0787481225ee3fee55ee3aed0 371 Gene3D G3DSA:3.90.1150.10 277 369 1.3E-26 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_10340 0ca707a0787481225ee3fee55ee3aed0 371 Gene3D G3DSA:3.90.1150.10 247 276 3.9E-5 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_10340 0ca707a0787481225ee3fee55ee3aed0 371 PIRSF PIRSF001434 1 364 1.7E-121 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AP3564_10340 0ca707a0787481225ee3fee55ee3aed0 371 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 4 361 1.7E-133 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AP3564_10340 0ca707a0787481225ee3fee55ee3aed0 371 Gene3D G3DSA:3.40.640.10 2 245 8.7E-85 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_10340 0ca707a0787481225ee3fee55ee3aed0 371 SUPERFAMILY SSF53383 17 362 2.66E-104 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_04390 a6c2392bb4672ad008cd0cb38cc4c9a1 641 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 359 372 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AP3564_04390 a6c2392bb4672ad008cd0cb38cc4c9a1 641 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 422 437 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AP3564_04390 a6c2392bb4672ad008cd0cb38cc4c9a1 641 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 620 640 1.1E-7 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AP3564_04390 a6c2392bb4672ad008cd0cb38cc4c9a1 641 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 603 620 1.1E-7 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AP3564_04390 a6c2392bb4672ad008cd0cb38cc4c9a1 641 Gene3D G3DSA:1.10.8.60 507 587 1.8E-25 T 13-10-2018 AP3564_04390 a6c2392bb4672ad008cd0cb38cc4c9a1 641 SMART SM00382 355 499 1.3E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_04390 a6c2392bb4672ad008cd0cb38cc4c9a1 641 Pfam PF01590 GAF domain 108 188 7.3E-5 T 13-10-2018 IPR003018 GAF domain GO:0005515 AP3564_04390 a6c2392bb4672ad008cd0cb38cc4c9a1 641 Gene3D G3DSA:1.10.10.60 597 639 2.4E-13 T 13-10-2018 AP3564_04390 a6c2392bb4672ad008cd0cb38cc4c9a1 641 Gene3D G3DSA:3.30.450.20 220 323 2.7E-12 T 13-10-2018 AP3564_04390 a6c2392bb4672ad008cd0cb38cc4c9a1 641 SUPERFAMILY SSF55781 59 195 2.55E-8 T 13-10-2018 AP3564_04390 a6c2392bb4672ad008cd0cb38cc4c9a1 641 Pfam PF00158 Sigma-54 interaction domain 335 503 8.0E-69 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AP3564_04390 a6c2392bb4672ad008cd0cb38cc4c9a1 641 Pfam PF02954 Bacterial regulatory protein, Fis family 599 637 7.6E-11 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AP3564_04390 a6c2392bb4672ad008cd0cb38cc4c9a1 641 SUPERFAMILY SSF46689 591 639 3.29E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_04390 a6c2392bb4672ad008cd0cb38cc4c9a1 641 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 209 318 2.2E-6 T 13-10-2018 IPR000014 PAS domain AP3564_04390 a6c2392bb4672ad008cd0cb38cc4c9a1 641 SUPERFAMILY SSF52540 334 580 9.75E-70 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_04390 a6c2392bb4672ad008cd0cb38cc4c9a1 641 SUPERFAMILY SSF55785 204 309 6.63E-6 T 13-10-2018 IPR035965 PAS domain superfamily AP3564_04390 a6c2392bb4672ad008cd0cb38cc4c9a1 641 Gene3D G3DSA:3.30.450.40 15 197 2.8E-58 T 13-10-2018 IPR029016 GAF-like domain superfamily AP3564_04390 a6c2392bb4672ad008cd0cb38cc4c9a1 641 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 549 558 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site AP3564_04390 a6c2392bb4672ad008cd0cb38cc4c9a1 641 Gene3D G3DSA:3.40.50.300 324 506 5.4E-65 T 13-10-2018 AP3564_07105 d82102c8354d7cf94f851216f4dd93fd 254 SMART SM00420 6 58 4.8E-19 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AP3564_07105 d82102c8354d7cf94f851216f4dd93fd 254 SUPERFAMILY SSF46785 4 62 1.26E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_07105 d82102c8354d7cf94f851216f4dd93fd 254 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 9.2E-7 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AP3564_07105 d82102c8354d7cf94f851216f4dd93fd 254 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 9.2E-7 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AP3564_07105 d82102c8354d7cf94f851216f4dd93fd 254 Pfam PF08220 DeoR-like helix-turn-helix domain 6 62 3.3E-19 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AP3564_07105 d82102c8354d7cf94f851216f4dd93fd 254 Gene3D G3DSA:1.10.10.10 1 55 2.3E-7 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_07105 d82102c8354d7cf94f851216f4dd93fd 254 SUPERFAMILY SSF100950 72 231 2.41E-33 T 13-10-2018 IPR037171 NagB/RpiA transferase-like AP3564_07105 d82102c8354d7cf94f851216f4dd93fd 254 SMART SM01134 71 231 1.3E-60 T 13-10-2018 AP3564_07105 d82102c8354d7cf94f851216f4dd93fd 254 Pfam PF00455 DeoR C terminal sensor domain 73 230 8.1E-49 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain AP3564_07105 d82102c8354d7cf94f851216f4dd93fd 254 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AP3564_17360 06150cf8a9afb5dab605a91d139728f2 180 PIRSF PIRSF037778 1 176 8.1E-41 T 13-10-2018 IPR025720 ECF transporter, Riboflavin transporter RibU GO:0005886|GO:0032217|GO:0032218 AP3564_17360 06150cf8a9afb5dab605a91d139728f2 180 Gene3D G3DSA:1.10.1760.20 1 178 1.2E-47 T 13-10-2018 AP3564_17360 06150cf8a9afb5dab605a91d139728f2 180 Pfam PF12822 ECF transporter, substrate-specific component 1 164 6.3E-22 T 13-10-2018 IPR024529 ECF transporter, substrate-specific component GO:0005215 AP3564_05275 e75fda3ec2dd23ed9ab0a77fa68e682b 180 SUPERFAMILY SSF53271 3 177 6.82E-60 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like AP3564_05275 e75fda3ec2dd23ed9ab0a77fa68e682b 180 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 8 172 1.5E-68 T 13-10-2018 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620 AP3564_05275 e75fda3ec2dd23ed9ab0a77fa68e682b 180 Pfam PF00156 Phosphoribosyl transferase domain 13 159 2.8E-24 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AP3564_05275 e75fda3ec2dd23ed9ab0a77fa68e682b 180 Gene3D G3DSA:3.40.50.2020 1 179 2.4E-66 T 13-10-2018 AP3564_13430 e69a9d3ab3880d62e10c85b3cd05f1a3 369 ProSitePatterns PS00480 Citrate synthase signature. 255 268 - T 13-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 AP3564_13430 e69a9d3ab3880d62e10c85b3cd05f1a3 369 Gene3D G3DSA:1.10.230.10 221 320 2.7E-117 T 13-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain AP3564_13430 e69a9d3ab3880d62e10c85b3cd05f1a3 369 PIRSF PIRSF001369 1 369 4.8E-134 T 13-10-2018 IPR024176 Citrate synthase, bacterial-type AP3564_13430 e69a9d3ab3880d62e10c85b3cd05f1a3 369 Gene3D G3DSA:1.10.580.10 28 352 2.7E-117 T 13-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 AP3564_13430 e69a9d3ab3880d62e10c85b3cd05f1a3 369 Pfam PF00285 Citrate synthase, C-terminal domain 6 356 6.9E-116 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 AP3564_13430 e69a9d3ab3880d62e10c85b3cd05f1a3 369 PRINTS PR00143 Citrate synthase signature 195 223 9.5E-32 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 AP3564_13430 e69a9d3ab3880d62e10c85b3cd05f1a3 369 PRINTS PR00143 Citrate synthase signature 248 268 9.5E-32 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 AP3564_13430 e69a9d3ab3880d62e10c85b3cd05f1a3 369 PRINTS PR00143 Citrate synthase signature 326 340 9.5E-32 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 AP3564_13430 e69a9d3ab3880d62e10c85b3cd05f1a3 369 PRINTS PR00143 Citrate synthase signature 306 322 9.5E-32 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 AP3564_13430 e69a9d3ab3880d62e10c85b3cd05f1a3 369 PRINTS PR00143 Citrate synthase signature 124 137 9.5E-32 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 AP3564_13430 e69a9d3ab3880d62e10c85b3cd05f1a3 369 PRINTS PR00143 Citrate synthase signature 173 188 9.5E-32 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 AP3564_13430 e69a9d3ab3880d62e10c85b3cd05f1a3 369 SUPERFAMILY SSF48256 2 363 3.93E-123 T 13-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 AP3564_13110 8400e42bb3bf57971a456ce94eed3c02 189 SUPERFAMILY SSF47240 1 186 5.95E-70 T 13-10-2018 IPR009078 Ferritin-like superfamily AP3564_13110 8400e42bb3bf57971a456ce94eed3c02 189 Pfam PF05067 Manganese containing catalase 1 184 2.2E-76 T 13-10-2018 IPR007760 Manganese catalase AP3564_13110 8400e42bb3bf57971a456ce94eed3c02 189 Gene3D G3DSA:1.20.1260.10 1 184 4.1E-65 T 13-10-2018 IPR012347 Ferritin-like AP3564_12710 6fc83ebf523df83936ce73364fbcff3a 612 SMART SM00838 397 485 2.4E-7 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like AP3564_12710 6fc83ebf523df83936ce73364fbcff3a 612 Pfam PF14492 Elongation Factor G, domain II 330 379 1.2E-7 T 13-10-2018 AP3564_12710 6fc83ebf523df83936ce73364fbcff3a 612 SUPERFAMILY SSF54980 400 515 1.01E-30 T 13-10-2018 IPR035647 EF-G domain III/V-like AP3564_12710 6fc83ebf523df83936ce73364fbcff3a 612 SUPERFAMILY SSF52540 4 208 1.4E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_12710 6fc83ebf523df83936ce73364fbcff3a 612 Gene3D G3DSA:2.40.50.250 485 601 9.6E-131 T 13-10-2018 AP3564_12710 6fc83ebf523df83936ce73364fbcff3a 612 Pfam PF00009 Elongation factor Tu GTP binding domain 6 197 3.0E-57 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AP3564_12710 6fc83ebf523df83936ce73364fbcff3a 612 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 7 601 2.2E-291 T 13-10-2018 IPR006298 GTP-binding protein TypA GO:0005525 AP3564_12710 6fc83ebf523df83936ce73364fbcff3a 612 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 46 61 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site AP3564_12710 6fc83ebf523df83936ce73364fbcff3a 612 Gene3D G3DSA:3.40.50.300 4 200 3.1E-68 T 13-10-2018 AP3564_12710 6fc83ebf523df83936ce73364fbcff3a 612 Pfam PF03144 Elongation factor Tu domain 2 221 291 2.2E-11 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AP3564_12710 6fc83ebf523df83936ce73364fbcff3a 612 PRINTS PR00315 GTP-binding elongation factor signature 89 100 2.6E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AP3564_12710 6fc83ebf523df83936ce73364fbcff3a 612 PRINTS PR00315 GTP-binding elongation factor signature 9 22 2.6E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AP3564_12710 6fc83ebf523df83936ce73364fbcff3a 612 PRINTS PR00315 GTP-binding elongation factor signature 53 61 2.6E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AP3564_12710 6fc83ebf523df83936ce73364fbcff3a 612 PRINTS PR00315 GTP-binding elongation factor signature 125 134 2.6E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AP3564_12710 6fc83ebf523df83936ce73364fbcff3a 612 PRINTS PR00315 GTP-binding elongation factor signature 73 83 2.6E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AP3564_12710 6fc83ebf523df83936ce73364fbcff3a 612 SUPERFAMILY SSF50447 153 301 3.3E-31 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AP3564_12710 6fc83ebf523df83936ce73364fbcff3a 612 Gene3D G3DSA:3.30.70.870 308 592 9.6E-131 T 13-10-2018 AP3564_12710 6fc83ebf523df83936ce73364fbcff3a 612 Pfam PF00679 Elongation factor G C-terminus 397 479 6.0E-26 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like AP3564_12710 6fc83ebf523df83936ce73364fbcff3a 612 SUPERFAMILY SSF54980 304 389 2.88E-16 T 13-10-2018 IPR035647 EF-G domain III/V-like AP3564_12710 6fc83ebf523df83936ce73364fbcff3a 612 Gene3D G3DSA:3.30.70.240 391 484 9.6E-131 T 13-10-2018 AP3564_12710 6fc83ebf523df83936ce73364fbcff3a 612 Gene3D G3DSA:2.40.30.10 201 301 2.0E-33 T 13-10-2018 AP3564_12710 6fc83ebf523df83936ce73364fbcff3a 612 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 148 5.0E-24 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AP3564_12560 623c0b149cccb5172613a50b03eb9f62 555 Gene3D G3DSA:3.40.50.10710 207 357 3.5E-192 T 13-10-2018 AP3564_12560 623c0b149cccb5172613a50b03eb9f62 555 ProSitePatterns PS01292 Uncharacterized protein family UPF0036 signature. 364 392 - T 13-10-2018 IPR001587 Ribonuclease J, conserved site AP3564_12560 623c0b149cccb5172613a50b03eb9f62 555 SMART SM00849 21 215 8.9E-25 T 13-10-2018 IPR001279 Metallo-beta-lactamase AP3564_12560 623c0b149cccb5172613a50b03eb9f62 555 Gene3D G3DSA:3.10.20.580 449 555 9.1E-40 T 13-10-2018 AP3564_12560 623c0b149cccb5172613a50b03eb9f62 555 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 360 406 8.1E-9 T 13-10-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain AP3564_12560 623c0b149cccb5172613a50b03eb9f62 555 SUPERFAMILY SSF56281 13 422 2.49E-93 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AP3564_12560 623c0b149cccb5172613a50b03eb9f62 555 PIRSF PIRSF004803 1 555 2.4E-246 T 13-10-2018 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 AP3564_12560 623c0b149cccb5172613a50b03eb9f62 555 Pfam PF00753 Metallo-beta-lactamase superfamily 20 167 4.5E-16 T 13-10-2018 IPR001279 Metallo-beta-lactamase AP3564_12560 623c0b149cccb5172613a50b03eb9f62 555 Hamap MF_01491 Ribonuclease J [rnj]. 4 555 47.886 T 13-10-2018 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 AP3564_12560 623c0b149cccb5172613a50b03eb9f62 555 TIGRFAM TIGR00649 MG423: beta-CASP ribonuclease, RNase J family 10 553 4.3E-231 T 13-10-2018 IPR004613 Ribonuclease J GO:0003723|GO:0046872 AP3564_12560 623c0b149cccb5172613a50b03eb9f62 555 Gene3D G3DSA:3.60.15.10 12 442 3.5E-192 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AP3564_01245 3bb2941b9a8e78c48f6d5283e935002a 475 PRINTS PR01036 Tetracycline resistance protein TetB signature 125 149 8.0E-11 T 13-10-2018 AP3564_01245 3bb2941b9a8e78c48f6d5283e935002a 475 PRINTS PR01036 Tetracycline resistance protein TetB signature 289 313 8.0E-11 T 13-10-2018 AP3564_01245 3bb2941b9a8e78c48f6d5283e935002a 475 PRINTS PR01036 Tetracycline resistance protein TetB signature 95 115 8.0E-11 T 13-10-2018 AP3564_01245 3bb2941b9a8e78c48f6d5283e935002a 475 PRINTS PR01036 Tetracycline resistance protein TetB signature 4 28 8.0E-11 T 13-10-2018 AP3564_01245 3bb2941b9a8e78c48f6d5283e935002a 475 Pfam PF07690 Major Facilitator Superfamily 5 396 1.8E-49 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AP3564_01245 3bb2941b9a8e78c48f6d5283e935002a 475 Gene3D G3DSA:1.20.1250.20 248 471 1.1E-22 T 13-10-2018 AP3564_01245 3bb2941b9a8e78c48f6d5283e935002a 475 SUPERFAMILY SSF103473 2 462 6.67E-64 T 13-10-2018 IPR036259 MFS transporter superfamily AP3564_01245 3bb2941b9a8e78c48f6d5283e935002a 475 Gene3D G3DSA:1.20.1720.10 1 209 3.7E-38 T 13-10-2018 AP3564_01245 3bb2941b9a8e78c48f6d5283e935002a 475 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 3 419 1.6E-116 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 AP3564_04285 30fc354eb3e43b300b8f593a0ee17812 273 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 64 77 - T 13-10-2018 IPR018313 Solute-binding protein family 3, conserved site AP3564_04285 30fc354eb3e43b300b8f593a0ee17812 273 SMART SM00079 42 262 9.7E-8 T 13-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 AP3564_04285 30fc354eb3e43b300b8f593a0ee17812 273 SMART SM00062 42 263 1.7E-70 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AP3564_04285 30fc354eb3e43b300b8f593a0ee17812 273 Gene3D G3DSA:3.40.190.10 126 223 3.4E-78 T 13-10-2018 AP3564_04285 30fc354eb3e43b300b8f593a0ee17812 273 SUPERFAMILY SSF53850 7 262 9.96E-72 T 13-10-2018 AP3564_04285 30fc354eb3e43b300b8f593a0ee17812 273 Gene3D G3DSA:3.40.190.10 49 260 3.4E-78 T 13-10-2018 AP3564_04285 30fc354eb3e43b300b8f593a0ee17812 273 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 43 261 1.0E-64 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AP3564_19315 ccf045f89b3ad826803e7d9219b6b4b5 341 SMART SM00846 3 152 5.2E-84 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_19315 ccf045f89b3ad826803e7d9219b6b4b5 341 SUPERFAMILY SSF55347 152 314 1.43E-72 T 13-10-2018 AP3564_19315 ccf045f89b3ad826803e7d9219b6b4b5 341 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 150 157 - T 13-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_19315 ccf045f89b3ad826803e7d9219b6b4b5 341 Gene3D G3DSA:3.40.50.720 4 328 6.0E-152 T 13-10-2018 AP3564_19315 ccf045f89b3ad826803e7d9219b6b4b5 341 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 4 102 6.2E-37 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_19315 ccf045f89b3ad826803e7d9219b6b4b5 341 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 157 313 1.4E-68 T 13-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_19315 ccf045f89b3ad826803e7d9219b6b4b5 341 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 146 164 1.2E-40 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_19315 ccf045f89b3ad826803e7d9219b6b4b5 341 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 173 189 1.2E-40 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_19315 ccf045f89b3ad826803e7d9219b6b4b5 341 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 269 284 1.2E-40 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_19315 ccf045f89b3ad826803e7d9219b6b4b5 341 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 109 122 1.2E-40 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_19315 ccf045f89b3ad826803e7d9219b6b4b5 341 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 229 246 1.2E-40 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_19315 ccf045f89b3ad826803e7d9219b6b4b5 341 Gene3D G3DSA:3.30.360.10 151 315 6.0E-152 T 13-10-2018 AP3564_19315 ccf045f89b3ad826803e7d9219b6b4b5 341 PIRSF PIRSF000149 1 335 4.7E-138 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_19315 ccf045f89b3ad826803e7d9219b6b4b5 341 SUPERFAMILY SSF51735 1 179 1.54E-60 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_19315 ccf045f89b3ad826803e7d9219b6b4b5 341 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 325 9.2E-134 T 13-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_07910 b9c9a8c8e733e6d11f6c36c8d06f74b2 216 TIGRFAM TIGR03424 urea_degr_1: urea carboxylase-associated protein 1 15 214 2.7E-94 T 13-10-2018 IPR017791 Urea carboxylase-associated protein 1 AP3564_07910 b9c9a8c8e733e6d11f6c36c8d06f74b2 216 Pfam PF09347 Domain of unknown function (DUF1989) 21 182 3.3E-60 T 13-10-2018 IPR018959 Protein of unknown function DUF1989 AP3564_04605 5c4ecb346ebe61936e8fa16bdb917c6a 1082 TIGRFAM TIGR00348 hsdR: type I site-specific deoxyribonuclease, HsdR family 10 735 3.4E-183 T 13-10-2018 IPR004473 Restriction endonuclease, type I, HsdR GO:0003677|GO:0005524|GO:0009035|GO:0009307 AP3564_04605 5c4ecb346ebe61936e8fa16bdb917c6a 1082 Pfam PF11867 Domain of unknown function (DUF3387) 733 1061 2.3E-114 T 13-10-2018 IPR021810 Protein of unknown function DUF3387 AP3564_04605 5c4ecb346ebe61936e8fa16bdb917c6a 1082 Gene3D G3DSA:3.90.1570.50 88 261 2.9E-35 T 13-10-2018 AP3564_04605 5c4ecb346ebe61936e8fa16bdb917c6a 1082 SUPERFAMILY SSF52540 432 715 3.68E-8 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_04605 5c4ecb346ebe61936e8fa16bdb917c6a 1082 Gene3D G3DSA:3.40.50.300 281 499 1.3E-47 T 13-10-2018 AP3564_04605 5c4ecb346ebe61936e8fa16bdb917c6a 1082 SUPERFAMILY SSF52540 226 539 9.31E-24 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_04605 5c4ecb346ebe61936e8fa16bdb917c6a 1082 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 6 212 4.9E-46 T 13-10-2018 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 AP3564_04605 5c4ecb346ebe61936e8fa16bdb917c6a 1082 Gene3D G3DSA:3.40.50.300 500 743 4.2E-50 T 13-10-2018 AP3564_04605 5c4ecb346ebe61936e8fa16bdb917c6a 1082 SMART SM00487 278 514 5.9E-12 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AP3564_04605 5c4ecb346ebe61936e8fa16bdb917c6a 1082 Pfam PF04851 Type III restriction enzyme, res subunit 284 481 1.7E-20 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AP3564_15590 5d912b3b5ad5c9fdf076d3742f3424b9 529 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 416 524 5.0E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_15590 5d912b3b5ad5c9fdf076d3742f3424b9 529 PRINTS PR00344 Bacterial sensor protein C-terminal signature 456 470 1.8E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_15590 5d912b3b5ad5c9fdf076d3742f3424b9 529 PRINTS PR00344 Bacterial sensor protein C-terminal signature 474 484 1.8E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_15590 5d912b3b5ad5c9fdf076d3742f3424b9 529 PRINTS PR00344 Bacterial sensor protein C-terminal signature 486 504 1.8E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_15590 5d912b3b5ad5c9fdf076d3742f3424b9 529 PRINTS PR00344 Bacterial sensor protein C-terminal signature 510 523 1.8E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_15590 5d912b3b5ad5c9fdf076d3742f3424b9 529 SUPERFAMILY SSF55874 393 523 2.23E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_15590 5d912b3b5ad5c9fdf076d3742f3424b9 529 SUPERFAMILY SSF55785 208 307 4.01E-13 T 13-10-2018 IPR035965 PAS domain superfamily AP3564_15590 5d912b3b5ad5c9fdf076d3742f3424b9 529 Gene3D G3DSA:3.30.450.20 195 309 2.2E-24 T 13-10-2018 AP3564_15590 5d912b3b5ad5c9fdf076d3742f3424b9 529 SUPERFAMILY SSF103190 34 164 1.92E-41 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily AP3564_15590 5d912b3b5ad5c9fdf076d3742f3424b9 529 Gene3D G3DSA:3.30.565.10 386 528 5.1E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_15590 5d912b3b5ad5c9fdf076d3742f3424b9 529 SUPERFAMILY SSF55890 318 387 8.89E-12 T 13-10-2018 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 AP3564_15590 5d912b3b5ad5c9fdf076d3742f3424b9 529 SMART SM00091 208 275 7.7E-6 T 13-10-2018 IPR000014 PAS domain AP3564_15590 5d912b3b5ad5c9fdf076d3742f3424b9 529 Pfam PF17203 Single cache domain 3 30 163 9.1E-30 T 13-10-2018 IPR033463 Single cache domain 3 AP3564_15590 5d912b3b5ad5c9fdf076d3742f3424b9 529 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 317 361 7.2E-11 T 13-10-2018 IPR039506 SpoOB, alpha-helical domain AP3564_15590 5d912b3b5ad5c9fdf076d3742f3424b9 529 SMART SM00387 415 526 3.0E-26 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_15590 5d912b3b5ad5c9fdf076d3742f3424b9 529 Gene3D G3DSA:3.30.450.20 27 165 1.8E-47 T 13-10-2018 AP3564_15590 5d912b3b5ad5c9fdf076d3742f3424b9 529 Pfam PF00989 PAS fold 209 307 2.5E-10 T 13-10-2018 IPR013767 PAS fold GO:0006355 AP3564_15590 5d912b3b5ad5c9fdf076d3742f3424b9 529 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 212 262 1.4E-7 T 13-10-2018 IPR000014 PAS domain AP3564_08470 cf3735e3b85b92320b05bae2b436f2bd 958 Hamap MF_00205 UvrABC system protein A [uvrA]. 3 938 23.726 T 13-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 AP3564_08470 cf3735e3b85b92320b05bae2b436f2bd 958 Pfam PF00005 ABC transporter 622 858 9.0E-10 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_08470 cf3735e3b85b92320b05bae2b436f2bd 958 SUPERFAMILY SSF52540 11 569 5.74E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_08470 cf3735e3b85b92320b05bae2b436f2bd 958 Gene3D G3DSA:1.10.8.280 286 403 3.4E-256 T 13-10-2018 AP3564_08470 cf3735e3b85b92320b05bae2b436f2bd 958 ProSitePatterns PS00211 ABC transporters family signature. 487 501 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_08470 cf3735e3b85b92320b05bae2b436f2bd 958 Gene3D G3DSA:1.20.1580.10 691 828 1.2E-146 T 13-10-2018 AP3564_08470 cf3735e3b85b92320b05bae2b436f2bd 958 SUPERFAMILY SSF52540 613 912 6.39E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_08470 cf3735e3b85b92320b05bae2b436f2bd 958 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 5 923 0.0 T 13-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 AP3564_08470 cf3735e3b85b92320b05bae2b436f2bd 958 Gene3D G3DSA:1.20.1580.10 92 492 3.4E-256 T 13-10-2018 AP3564_08470 cf3735e3b85b92320b05bae2b436f2bd 958 Gene3D G3DSA:3.40.50.300 7 595 3.4E-256 T 13-10-2018 AP3564_08470 cf3735e3b85b92320b05bae2b436f2bd 958 Gene3D G3DSA:3.30.190.20 132 241 3.4E-256 T 13-10-2018 AP3564_08470 cf3735e3b85b92320b05bae2b436f2bd 958 SMART SM00382 631 953 2.8E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_08470 cf3735e3b85b92320b05bae2b436f2bd 958 Gene3D G3DSA:3.40.50.300 612 934 1.2E-146 T 13-10-2018 AP3564_08470 cf3735e3b85b92320b05bae2b436f2bd 958 ProSitePatterns PS00211 ABC transporters family signature. 828 842 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_17490 8ba042ca6c0a3ff6a06d6eb817094a0f 440 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 63 81 - T 13-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site AP3564_17490 8ba042ca6c0a3ff6a06d6eb817094a0f 440 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 388 401 1.3E-18 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AP3564_17490 8ba042ca6c0a3ff6a06d6eb817094a0f 440 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 198 211 1.3E-18 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AP3564_17490 8ba042ca6c0a3ff6a06d6eb817094a0f 440 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 83 95 1.3E-18 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AP3564_17490 8ba042ca6c0a3ff6a06d6eb817094a0f 440 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 287 306 1.3E-18 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AP3564_17490 8ba042ca6c0a3ff6a06d6eb817094a0f 440 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 63 81 1.3E-18 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AP3564_17490 8ba042ca6c0a3ff6a06d6eb817094a0f 440 Gene3D G3DSA:2.40.37.10 17 427 1.9E-159 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AP3564_17490 8ba042ca6c0a3ff6a06d6eb817094a0f 440 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 40 296 7.6E-70 T 13-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 AP3564_17490 8ba042ca6c0a3ff6a06d6eb817094a0f 440 SUPERFAMILY SSF50621 278 431 1.03E-53 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AP3564_17490 8ba042ca6c0a3ff6a06d6eb817094a0f 440 Gene3D G3DSA:3.20.20.10 38 297 1.9E-159 T 13-10-2018 IPR029066 PLP-binding barrel AP3564_17490 8ba042ca6c0a3ff6a06d6eb817094a0f 440 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 9 430 3.7E-159 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AP3564_17490 8ba042ca6c0a3ff6a06d6eb817094a0f 440 PRINTS PR01181 Diaminopimelate decarboxylase signature 398 420 2.0E-31 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AP3564_17490 8ba042ca6c0a3ff6a06d6eb817094a0f 440 PRINTS PR01181 Diaminopimelate decarboxylase signature 316 334 2.0E-31 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AP3564_17490 8ba042ca6c0a3ff6a06d6eb817094a0f 440 PRINTS PR01181 Diaminopimelate decarboxylase signature 170 179 2.0E-31 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AP3564_17490 8ba042ca6c0a3ff6a06d6eb817094a0f 440 PRINTS PR01181 Diaminopimelate decarboxylase signature 81 98 2.0E-31 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AP3564_17490 8ba042ca6c0a3ff6a06d6eb817094a0f 440 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 33 388 1.4E-16 T 13-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 AP3564_17490 8ba042ca6c0a3ff6a06d6eb817094a0f 440 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 19 431 41.013 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AP3564_17490 8ba042ca6c0a3ff6a06d6eb817094a0f 440 SUPERFAMILY SSF51419 30 299 9.6E-82 T 13-10-2018 IPR029066 PLP-binding barrel AP3564_18250 8e18d34d03d0f7902cb01eb32a06e7f9 140 Gene3D G3DSA:1.10.10.10 1 83 3.0E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_18250 8e18d34d03d0f7902cb01eb32a06e7f9 140 SUPERFAMILY SSF46785 4 134 2.41E-36 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_18250 8e18d34d03d0f7902cb01eb32a06e7f9 140 Gene3D G3DSA:3.30.1490.190 87 139 1.3E-14 T 13-10-2018 AP3564_18250 8e18d34d03d0f7902cb01eb32a06e7f9 140 Pfam PF01475 Ferric uptake regulator family 12 129 1.4E-32 T 13-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 AP3564_04140 facbddbe23ba6f712bf72a5d778c97b1 324 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 19 319 2.3E-127 T 13-10-2018 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AP3564_04140 facbddbe23ba6f712bf72a5d778c97b1 324 Gene3D G3DSA:3.40.50.10750 142 295 9.6E-136 T 13-10-2018 AP3564_04140 facbddbe23ba6f712bf72a5d778c97b1 324 PIRSF PIRSF000428 1 324 2.1E-113 T 13-10-2018 IPR012147 Phosphate acetyl/butyryltransferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AP3564_04140 facbddbe23ba6f712bf72a5d778c97b1 324 SUPERFAMILY SSF53659 6 322 9.87E-97 T 13-10-2018 AP3564_04140 facbddbe23ba6f712bf72a5d778c97b1 324 Gene3D G3DSA:3.40.50.10950 18 319 9.6E-136 T 13-10-2018 AP3564_04140 facbddbe23ba6f712bf72a5d778c97b1 324 Pfam PF01515 Phosphate acetyl/butaryl transferase 7 319 5.2E-130 T 13-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AP3564_01415 bb544c072c4d9eb14a87b184b655254b 299 Gene3D G3DSA:1.10.3720.10 53 294 4.2E-50 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_01415 bb544c072c4d9eb14a87b184b655254b 299 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 286 1.8E-8 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AP3564_01415 bb544c072c4d9eb14a87b184b655254b 299 SUPERFAMILY SSF161098 11 297 8.5E-42 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_02170 7b730d49d65b39e299d73af7ef41d7e4 252 SUPERFAMILY SSF46955 3 110 1.03E-28 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily AP3564_02170 7b730d49d65b39e299d73af7ef41d7e4 252 Pfam PF13411 MerR HTH family regulatory protein 3 71 6.1E-18 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AP3564_02170 7b730d49d65b39e299d73af7ef41d7e4 252 Gene3D G3DSA:1.10.1660.10 1 144 1.5E-42 T 13-10-2018 AP3564_02170 7b730d49d65b39e299d73af7ef41d7e4 252 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 39 59 3.8E-7 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AP3564_02170 7b730d49d65b39e299d73af7ef41d7e4 252 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 4 15 3.8E-7 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AP3564_02170 7b730d49d65b39e299d73af7ef41d7e4 252 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 15 28 3.8E-7 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AP3564_02170 7b730d49d65b39e299d73af7ef41d7e4 252 SUPERFAMILY SSF89082 163 250 1.22E-26 T 13-10-2018 IPR036244 TipA-like multidrug resistance regulator, antibiotic-recognition domain AP3564_02170 7b730d49d65b39e299d73af7ef41d7e4 252 SMART SM00422 3 72 5.4E-24 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AP3564_02170 7b730d49d65b39e299d73af7ef41d7e4 252 Gene3D G3DSA:1.10.490.50 163 252 7.1E-23 T 13-10-2018 IPR036244 TipA-like multidrug resistance regulator, antibiotic-recognition domain AP3564_02170 7b730d49d65b39e299d73af7ef41d7e4 252 Pfam PF07739 TipAS antibiotic-recognition domain 135 249 7.3E-36 T 13-10-2018 IPR012925 TipAS antibiotic-recognition domain AP3564_17855 180a9fa58b639828adfc4975a1a61347 132 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 1 129 24.112 T 13-10-2018 IPR011605 NusB antitermination factor GO:0006353 AP3564_17855 180a9fa58b639828adfc4975a1a61347 132 Pfam PF01029 NusB family 4 124 8.3E-39 T 13-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 AP3564_17855 180a9fa58b639828adfc4975a1a61347 132 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 2 127 1.3E-44 T 13-10-2018 IPR011605 NusB antitermination factor GO:0006353 AP3564_17855 180a9fa58b639828adfc4975a1a61347 132 SUPERFAMILY SSF48013 2 128 2.22E-40 T 13-10-2018 IPR035926 NusB-like superfamily AP3564_17855 180a9fa58b639828adfc4975a1a61347 132 Gene3D G3DSA:1.10.940.10 1 132 6.9E-46 T 13-10-2018 IPR035926 NusB-like superfamily AP3564_14345 f3fe03c24f72398f90448efc413cd41f 217 Gene3D G3DSA:1.10.3720.10 8 215 8.3E-40 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_14345 f3fe03c24f72398f90448efc413cd41f 217 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 56 206 4.6E-8 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AP3564_14345 f3fe03c24f72398f90448efc413cd41f 217 SUPERFAMILY SSF161098 11 203 2.22E-36 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_11870 56341bf3801f39eb3c29cd322785add8 608 SUPERFAMILY SSF47384 380 445 7.46E-13 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AP3564_11870 56341bf3801f39eb3c29cd322785add8 608 Pfam PF00512 His Kinase A (phospho-acceptor) domain 386 446 3.2E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AP3564_11870 56341bf3801f39eb3c29cd322785add8 608 Pfam PF00989 PAS fold 256 364 1.1E-9 T 13-10-2018 IPR013767 PAS fold GO:0006355 AP3564_11870 56341bf3801f39eb3c29cd322785add8 608 SMART SM00091 4 70 1.5E-4 T 13-10-2018 IPR000014 PAS domain AP3564_11870 56341bf3801f39eb3c29cd322785add8 608 SMART SM00091 132 198 2.9 T 13-10-2018 IPR000014 PAS domain AP3564_11870 56341bf3801f39eb3c29cd322785add8 608 SMART SM00091 256 322 5.8E-8 T 13-10-2018 IPR000014 PAS domain AP3564_11870 56341bf3801f39eb3c29cd322785add8 608 PRINTS PR00344 Bacterial sensor protein C-terminal signature 578 591 3.0E-16 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_11870 56341bf3801f39eb3c29cd322785add8 608 PRINTS PR00344 Bacterial sensor protein C-terminal signature 555 573 3.0E-16 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_11870 56341bf3801f39eb3c29cd322785add8 608 PRINTS PR00344 Bacterial sensor protein C-terminal signature 544 554 3.0E-16 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_11870 56341bf3801f39eb3c29cd322785add8 608 PRINTS PR00344 Bacterial sensor protein C-terminal signature 526 540 3.0E-16 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_11870 56341bf3801f39eb3c29cd322785add8 608 SUPERFAMILY SSF55785 241 366 8.9E-11 T 13-10-2018 IPR035965 PAS domain superfamily AP3564_11870 56341bf3801f39eb3c29cd322785add8 608 Gene3D G3DSA:1.10.287.130 369 446 9.6E-19 T 13-10-2018 AP3564_11870 56341bf3801f39eb3c29cd322785add8 608 Pfam PF13426 PAS domain 144 242 1.5E-7 T 13-10-2018 IPR000014 PAS domain AP3564_11870 56341bf3801f39eb3c29cd322785add8 608 Gene3D G3DSA:3.30.565.10 448 596 1.1E-46 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_11870 56341bf3801f39eb3c29cd322785add8 608 SUPERFAMILY SSF55785 146 253 8.03E-8 T 13-10-2018 IPR035965 PAS domain superfamily AP3564_11870 56341bf3801f39eb3c29cd322785add8 608 SMART SM00387 489 594 1.4E-36 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_11870 56341bf3801f39eb3c29cd322785add8 608 SUPERFAMILY SSF55785 19 103 3.07E-16 T 13-10-2018 IPR035965 PAS domain superfamily AP3564_11870 56341bf3801f39eb3c29cd322785add8 608 SMART SM00388 384 447 1.4E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AP3564_11870 56341bf3801f39eb3c29cd322785add8 608 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 490 593 6.5E-24 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_11870 56341bf3801f39eb3c29cd322785add8 608 Gene3D G3DSA:3.30.450.20 143 242 4.6E-10 T 13-10-2018 AP3564_11870 56341bf3801f39eb3c29cd322785add8 608 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 252 374 6.8E-12 T 13-10-2018 IPR000014 PAS domain AP3564_11870 56341bf3801f39eb3c29cd322785add8 608 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 14 100 3.7E-9 T 13-10-2018 IPR000014 PAS domain AP3564_11870 56341bf3801f39eb3c29cd322785add8 608 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 145 248 1.1E-8 T 13-10-2018 IPR000014 PAS domain AP3564_11870 56341bf3801f39eb3c29cd322785add8 608 Pfam PF08447 PAS fold 28 100 1.3E-9 T 13-10-2018 IPR013655 PAS fold-3 GO:0005515 AP3564_11870 56341bf3801f39eb3c29cd322785add8 608 SUPERFAMILY SSF55874 437 592 8.25E-40 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_11870 56341bf3801f39eb3c29cd322785add8 608 Gene3D G3DSA:3.30.450.20 8 114 5.5E-22 T 13-10-2018 AP3564_11870 56341bf3801f39eb3c29cd322785add8 608 Gene3D G3DSA:3.30.450.20 243 366 4.1E-12 T 13-10-2018 AP3564_04160 508b36c3ccbb2b1d6e5430b1c698359e 546 Gene3D G3DSA:1.20.210.10 1 546 1.5E-132 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_04160 508b36c3ccbb2b1d6e5430b1c698359e 546 SUPERFAMILY SSF81442 10 542 9.03E-111 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_04160 508b36c3ccbb2b1d6e5430b1c698359e 546 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 13 466 6.5E-92 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_04160 508b36c3ccbb2b1d6e5430b1c698359e 546 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 217 271 - T 13-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_04160 508b36c3ccbb2b1d6e5430b1c698359e 546 PRINTS PR01165 Cytochrome c oxidase subunit I signature 215 236 1.0E-11 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_04160 508b36c3ccbb2b1d6e5430b1c698359e 546 PRINTS PR01165 Cytochrome c oxidase subunit I signature 286 307 1.0E-11 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_04160 508b36c3ccbb2b1d6e5430b1c698359e 546 PRINTS PR01165 Cytochrome c oxidase subunit I signature 10 35 1.0E-11 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_04160 508b36c3ccbb2b1d6e5430b1c698359e 546 PRINTS PR01165 Cytochrome c oxidase subunit I signature 117 129 1.0E-11 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_04160 508b36c3ccbb2b1d6e5430b1c698359e 546 PRINTS PR01165 Cytochrome c oxidase subunit I signature 417 438 1.0E-11 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_17345 6e1474e9219b4b99f1f84a95882368dc 498 SUPERFAMILY SSF52540 59 346 3.47E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_17345 6e1474e9219b4b99f1f84a95882368dc 498 SMART SM00490 243 325 4.8E-24 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_17345 6e1474e9219b4b99f1f84a95882368dc 498 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 8 354 5.1E-110 T 13-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 AP3564_17345 6e1474e9219b4b99f1f84a95882368dc 498 Gene3D G3DSA:3.40.50.300 1 199 1.1E-68 T 13-10-2018 AP3564_17345 6e1474e9219b4b99f1f84a95882368dc 498 Pfam PF00270 DEAD/DEAH box helicase 21 179 4.7E-18 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AP3564_17345 6e1474e9219b4b99f1f84a95882368dc 498 SMART SM00487 14 209 1.8E-28 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AP3564_17345 6e1474e9219b4b99f1f84a95882368dc 498 ProSitePatterns PS00690 DEAH-box subfamily ATP-dependent helicases signature. 132 141 - T 13-10-2018 IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site AP3564_17345 6e1474e9219b4b99f1f84a95882368dc 498 Pfam PF00271 Helicase conserved C-terminal domain 217 324 2.1E-19 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_17345 6e1474e9219b4b99f1f84a95882368dc 498 Pfam PF16124 RecQ zinc-binding 417 463 4.0E-8 T 13-10-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain AP3564_18415 d5fa26bf311359310b34eac37d616755 369 Pfam PF06925 Monogalactosyldiacylglycerol (MGDG) synthase 16 182 1.8E-30 T 13-10-2018 IPR009695 Diacylglycerol glucosyltransferase, N-terminal GO:0009247|GO:0016758 AP3564_18415 d5fa26bf311359310b34eac37d616755 369 Gene3D G3DSA:3.40.50.2000 191 348 5.5E-17 T 13-10-2018 AP3564_18415 d5fa26bf311359310b34eac37d616755 369 SUPERFAMILY SSF53756 81 353 3.53E-31 T 13-10-2018 AP3564_06760 c7fd8291731736003427211109052b8e 454 SUPERFAMILY SSF53244 312 451 2.01E-37 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AP3564_06760 c7fd8291731736003427211109052b8e 454 Gene3D G3DSA:3.40.1390.10 2 85 1.3E-21 T 13-10-2018 AP3564_06760 c7fd8291731736003427211109052b8e 454 Gene3D G3DSA:3.90.190.20 311 454 1.4E-44 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AP3564_06760 c7fd8291731736003427211109052b8e 454 Pfam PF02875 Mur ligase family, glutamate ligase domain 314 391 4.1E-18 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 AP3564_06760 c7fd8291731736003427211109052b8e 454 SUPERFAMILY SSF63418 20 100 4.71E-24 T 13-10-2018 IPR035911 MurE/MurF, N-terminal AP3564_06760 c7fd8291731736003427211109052b8e 454 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 32 451 2.1E-143 T 13-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AP3564_06760 c7fd8291731736003427211109052b8e 454 Pfam PF08245 Mur ligase middle domain 111 291 9.3E-51 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 AP3564_06760 c7fd8291731736003427211109052b8e 454 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 7 452 35.947 T 13-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AP3564_06760 c7fd8291731736003427211109052b8e 454 Pfam PF01225 Mur ligase family, catalytic domain 26 100 5.0E-11 T 13-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 AP3564_06760 c7fd8291731736003427211109052b8e 454 SUPERFAMILY SSF53623 105 309 3.66E-54 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AP3564_06760 c7fd8291731736003427211109052b8e 454 Gene3D G3DSA:3.40.1190.10 87 309 8.2E-69 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AP3564_17940 937488585c6aca963a1869c4192e08f9 123 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 6 123 2.0E-8 T 13-10-2018 AP3564_17845 5c827a74de8cd389dd1343080d903696 448 Pfam PF13742 OB-fold nucleic acid binding domain 8 102 2.3E-28 T 13-10-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 AP3564_17845 5c827a74de8cd389dd1343080d903696 448 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 8 348 6.5E-134 T 13-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 AP3564_17845 5c827a74de8cd389dd1343080d903696 448 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 4 441 29.865 T 13-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 AP3564_17845 5c827a74de8cd389dd1343080d903696 448 Pfam PF02601 Exonuclease VII, large subunit 125 438 3.3E-100 T 13-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 AP3564_13395 2fb60c7e6d189652a448b229286532c3 131 Gene3D G3DSA:1.10.10.10 1 131 1.5E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_13395 2fb60c7e6d189652a448b229286532c3 131 Pfam PF01047 MarR family 27 85 2.6E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_13395 2fb60c7e6d189652a448b229286532c3 131 PRINTS PR00598 Bacterial regulatory protein MarR family signature 110 130 5.2E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_13395 2fb60c7e6d189652a448b229286532c3 131 PRINTS PR00598 Bacterial regulatory protein MarR family signature 80 96 5.2E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_13395 2fb60c7e6d189652a448b229286532c3 131 PRINTS PR00598 Bacterial regulatory protein MarR family signature 61 76 5.2E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_13395 2fb60c7e6d189652a448b229286532c3 131 SMART SM00347 20 120 3.7E-23 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_13395 2fb60c7e6d189652a448b229286532c3 131 SUPERFAMILY SSF46785 18 130 8.32E-28 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_09020 49006efe4463b0e71ed90855559c92ae 91 PIRSF PIRSF012565 1 91 6.9E-49 T 13-10-2018 IPR009370 Protein of unknown function DUF1027 AP3564_09020 49006efe4463b0e71ed90855559c92ae 91 Pfam PF06265 Protein of unknown function (DUF1027) 5 87 4.9E-39 T 13-10-2018 IPR009370 Protein of unknown function DUF1027 AP3564_09020 49006efe4463b0e71ed90855559c92ae 91 Gene3D G3DSA:3.50.4.20 1 91 2.2E-43 T 13-10-2018 IPR038141 YutD-like superfamily AP3564_16430 ab0417f34acfa95a7d3a14f36119c68b 354 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 8 350 73.803 T 13-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 AP3564_16430 ab0417f34acfa95a7d3a14f36119c68b 354 Gene3D G3DSA:1.10.150.530 8 68 2.0E-21 T 13-10-2018 AP3564_16430 ab0417f34acfa95a7d3a14f36119c68b 354 Pfam PF13394 4Fe-4S single cluster domain 116 211 2.5E-6 T 13-10-2018 AP3564_16430 ab0417f34acfa95a7d3a14f36119c68b 354 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 6 353 1.5E-159 T 13-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 AP3564_16430 ab0417f34acfa95a7d3a14f36119c68b 354 Pfam PF04055 Radical SAM superfamily 111 281 7.3E-18 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AP3564_16430 ab0417f34acfa95a7d3a14f36119c68b 354 SUPERFAMILY SSF102114 91 308 4.05E-15 T 13-10-2018 AP3564_16430 ab0417f34acfa95a7d3a14f36119c68b 354 PIRSF PIRSF006004 3 354 3.0E-138 T 13-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 AP3564_16430 ab0417f34acfa95a7d3a14f36119c68b 354 Gene3D G3DSA:3.20.20.70 71 335 2.0E-100 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_07920 ce84cf4c58fc9a0cda6cb466e0365262 590 Pfam PF01425 Amidase 29 440 1.9E-75 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AP3564_07920 ce84cf4c58fc9a0cda6cb466e0365262 590 SUPERFAMILY SSF75304 11 447 1.19E-100 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AP3564_07920 ce84cf4c58fc9a0cda6cb466e0365262 590 Gene3D G3DSA:3.90.1300.10 45 444 4.0E-129 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AP3564_07920 ce84cf4c58fc9a0cda6cb466e0365262 590 Gene3D G3DSA:1.20.58.1700 296 371 4.0E-129 T 13-10-2018 AP3564_07920 ce84cf4c58fc9a0cda6cb466e0365262 590 TIGRFAM TIGR02713 allophanate_hyd: allophanate hydrolase 45 584 6.7E-191 T 13-10-2018 IPR014085 Allophanate hydrolase KEGG: 00220+3.5.1.54|KEGG: 00791+3.5.1.54|MetaCyc: PWY-5169|MetaCyc: PWY-5703 AP3564_07920 ce84cf4c58fc9a0cda6cb466e0365262 590 Gene3D G3DSA:3.10.490.10 458 589 6.4E-45 T 13-10-2018 AP3564_02070 1c4b607ccff98c647113ff080902c5b2 273 Gene3D G3DSA:1.10.3720.10 73 267 1.1E-27 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_02070 1c4b607ccff98c647113ff080902c5b2 273 SUPERFAMILY SSF161098 73 258 1.83E-33 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_02070 1c4b607ccff98c647113ff080902c5b2 273 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 97 266 1.4E-23 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AP3564_09535 07729d627f5a1aee587afaa10066c6aa 327 Gene3D G3DSA:3.40.190.10 26 122 7.3E-16 T 13-10-2018 AP3564_09535 07729d627f5a1aee587afaa10066c6aa 327 Gene3D G3DSA:3.40.190.10 138 327 2.8E-32 T 13-10-2018 AP3564_09535 07729d627f5a1aee587afaa10066c6aa 327 Pfam PF09084 NMT1/THI5 like 40 251 3.4E-22 T 13-10-2018 IPR015168 SsuA/THI5-like AP3564_09535 07729d627f5a1aee587afaa10066c6aa 327 SUPERFAMILY SSF53850 28 254 4.41E-35 T 13-10-2018 AP3564_01295 03cac866cd793e92af4aaf5e099c7594 359 Gene3D G3DSA:3.40.50.300 6 225 6.6E-72 T 13-10-2018 AP3564_01295 03cac866cd793e92af4aaf5e099c7594 359 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_01295 03cac866cd793e92af4aaf5e099c7594 359 Pfam PF08402 TOBE domain 276 345 3.1E-7 T 13-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AP3564_01295 03cac866cd793e92af4aaf5e099c7594 359 SMART SM00382 32 215 2.1E-20 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_01295 03cac866cd793e92af4aaf5e099c7594 359 Gene3D G3DSA:2.40.50.940 226 344 5.2E-12 T 13-10-2018 AP3564_01295 03cac866cd793e92af4aaf5e099c7594 359 SUPERFAMILY SSF52540 6 248 1.3E-86 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_01295 03cac866cd793e92af4aaf5e099c7594 359 Gene3D G3DSA:2.40.50.140 283 337 5.2E-12 T 13-10-2018 AP3564_01295 03cac866cd793e92af4aaf5e099c7594 359 SUPERFAMILY SSF50331 240 345 3.49E-12 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AP3564_01295 03cac866cd793e92af4aaf5e099c7594 359 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 38 318 1.1E-108 T 13-10-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 AP3564_01295 03cac866cd793e92af4aaf5e099c7594 359 Pfam PF00005 ABC transporter 23 165 1.3E-37 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_08235 789ebdef3cdda50c8615cc8e65c66373 157 Pfam PF04073 Aminoacyl-tRNA editing domain 35 146 1.7E-23 T 13-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AP3564_08235 789ebdef3cdda50c8615cc8e65c66373 157 SUPERFAMILY SSF55826 5 156 4.32E-41 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 AP3564_08235 789ebdef3cdda50c8615cc8e65c66373 157 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 5 155 2.9E-59 T 13-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC AP3564_08235 789ebdef3cdda50c8615cc8e65c66373 157 Gene3D G3DSA:3.90.960.10 1 157 8.3E-53 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 AP3564_08235 789ebdef3cdda50c8615cc8e65c66373 157 PIRSF PIRSF006181 1 157 9.8E-62 T 13-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC AP3564_12165 166dc5adaa8810cd24c4cf404a26f74f 411 Gene3D G3DSA:3.20.20.140 52 359 1.1E-156 T 13-10-2018 AP3564_12165 166dc5adaa8810cd24c4cf404a26f74f 411 Gene3D G3DSA:2.30.40.10 8 404 1.1E-156 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AP3564_12165 166dc5adaa8810cd24c4cf404a26f74f 411 SUPERFAMILY SSF51556 51 370 7.94E-92 T 13-10-2018 IPR032466 Metal-dependent hydrolase AP3564_12165 166dc5adaa8810cd24c4cf404a26f74f 411 SUPERFAMILY SSF51338 1 405 3.74E-7 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AP3564_12165 166dc5adaa8810cd24c4cf404a26f74f 411 Pfam PF07969 Amidohydrolase family 150 399 3.2E-30 T 13-10-2018 IPR013108 Amidohydrolase 3 AP3564_16385 af10d15daf432f5d369740ef09bb9078 681 Gene3D G3DSA:2.40.50.140 44 140 7.6E-8 T 13-10-2018 AP3564_16385 af10d15daf432f5d369740ef09bb9078 681 Gene3D G3DSA:3.40.50.300 440 612 5.2E-58 T 13-10-2018 AP3564_16385 af10d15daf432f5d369740ef09bb9078 681 Gene3D G3DSA:3.40.50.300 194 433 2.1E-89 T 13-10-2018 AP3564_16385 af10d15daf432f5d369740ef09bb9078 681 Gene3D G3DSA:1.10.150.20 3 41 3.8E-5 T 13-10-2018 AP3564_16385 af10d15daf432f5d369740ef09bb9078 681 Pfam PF00270 DEAD/DEAH box helicase 257 414 6.4E-18 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AP3564_16385 af10d15daf432f5d369740ef09bb9078 681 Pfam PF17191 RecG wedge domain 10 164 1.0E-18 T 13-10-2018 IPR033454 RecG, wedge domain AP3564_16385 af10d15daf432f5d369740ef09bb9078 681 SUPERFAMILY SSF50249 4 168 7.37E-28 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_16385 af10d15daf432f5d369740ef09bb9078 681 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 25 647 2.5E-244 T 13-10-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 AP3564_16385 af10d15daf432f5d369740ef09bb9078 681 SUPERFAMILY SSF52540 436 638 2.41E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_16385 af10d15daf432f5d369740ef09bb9078 681 Pfam PF00271 Helicase conserved C-terminal domain 449 572 5.7E-21 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_16385 af10d15daf432f5d369740ef09bb9078 681 SMART SM00487 252 442 1.9E-34 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AP3564_16385 af10d15daf432f5d369740ef09bb9078 681 SMART SM00490 487 572 4.2E-22 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_16385 af10d15daf432f5d369740ef09bb9078 681 SUPERFAMILY SSF52540 172 435 1.68E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_17415 87cfd92c7448f7de4a80a60e6b08007c 245 Gene3D G3DSA:3.10.290.10 1 57 9.8E-23 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AP3564_17415 87cfd92c7448f7de4a80a60e6b08007c 245 SUPERFAMILY SSF55174 2 67 1.14E-16 T 13-10-2018 AP3564_17415 87cfd92c7448f7de4a80a60e6b08007c 245 SMART SM00363 2 61 3.2E-16 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_17415 87cfd92c7448f7de4a80a60e6b08007c 245 Pfam PF01479 S4 domain 2 48 4.5E-16 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_17415 87cfd92c7448f7de4a80a60e6b08007c 245 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 66 226 1.1E-52 T 13-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 AP3564_17415 87cfd92c7448f7de4a80a60e6b08007c 245 SUPERFAMILY SSF55120 45 238 6.48E-46 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AP3564_17415 87cfd92c7448f7de4a80a60e6b08007c 245 Pfam PF00849 RNA pseudouridylate synthase 62 195 1.5E-23 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AP3564_17415 87cfd92c7448f7de4a80a60e6b08007c 245 Gene3D G3DSA:3.30.70.1560 123 215 2.1E-58 T 13-10-2018 AP3564_17415 87cfd92c7448f7de4a80a60e6b08007c 245 Gene3D G3DSA:3.30.70.580 63 223 2.1E-58 T 13-10-2018 AP3564_17415 87cfd92c7448f7de4a80a60e6b08007c 245 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 99 113 - T 13-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 AP3564_04200 3b6f1e45b18ef099376dbac8dc3d1d2d 227 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 58 67 - T 13-10-2018 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AP3564_04200 3b6f1e45b18ef099376dbac8dc3d1d2d 227 Gene3D G3DSA:3.40.470.10 1 225 2.4E-102 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AP3564_04200 3b6f1e45b18ef099376dbac8dc3d1d2d 227 SMART SM00986 50 210 2.9E-38 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AP3564_04200 3b6f1e45b18ef099376dbac8dc3d1d2d 227 Pfam PF03167 Uracil DNA glycosylase superfamily 52 209 2.1E-26 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AP3564_04200 3b6f1e45b18ef099376dbac8dc3d1d2d 227 SMART SM00987 50 210 2.9E-38 T 13-10-2018 AP3564_04200 3b6f1e45b18ef099376dbac8dc3d1d2d 227 SUPERFAMILY SSF52141 4 221 1.02E-94 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AP3564_04200 3b6f1e45b18ef099376dbac8dc3d1d2d 227 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 6 221 41.535 T 13-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AP3564_04200 3b6f1e45b18ef099376dbac8dc3d1d2d 227 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 7 213 4.2E-86 T 13-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AP3564_12775 4b54d3068ac09c0a12f3f2bf21df979e 139 Gene3D G3DSA:3.30.420.10 2 131 1.3E-26 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AP3564_12775 4b54d3068ac09c0a12f3f2bf21df979e 139 SUPERFAMILY SSF53098 2 122 1.16E-26 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_12775 4b54d3068ac09c0a12f3f2bf21df979e 139 Pfam PF13456 Reverse transcriptase-like 7 124 9.8E-17 T 13-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 AP3564_03210 4a772af9caae151d95226c2073f727fc 185 SUPERFAMILY SSF47413 4 70 2.95E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AP3564_03210 4a772af9caae151d95226c2073f727fc 185 Pfam PF01381 Helix-turn-helix 14 64 9.9E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AP3564_03210 4a772af9caae151d95226c2073f727fc 185 SUPERFAMILY SSF51182 51 183 1.74E-25 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily AP3564_03210 4a772af9caae151d95226c2073f727fc 185 Pfam PF07883 Cupin domain 111 179 4.3E-13 T 13-10-2018 IPR013096 Cupin 2, conserved barrel AP3564_03210 4a772af9caae151d95226c2073f727fc 185 Gene3D G3DSA:1.10.260.40 2 80 2.0E-17 T 13-10-2018 AP3564_03210 4a772af9caae151d95226c2073f727fc 185 SMART SM00530 11 66 3.7E-10 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AP3564_03210 4a772af9caae151d95226c2073f727fc 185 Gene3D G3DSA:2.60.120.10 91 185 2.2E-28 T 13-10-2018 IPR014710 RmlC-like jelly roll fold AP3564_19555 b86c3fb1cd7b1b6cea8071dbae41ed1a 601 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 439 596 1.7E-43 T 13-10-2018 IPR000160 GGDEF domain AP3564_19555 b86c3fb1cd7b1b6cea8071dbae41ed1a 601 SUPERFAMILY SSF55781 287 442 8.51E-15 T 13-10-2018 AP3564_19555 b86c3fb1cd7b1b6cea8071dbae41ed1a 601 SUPERFAMILY SSF55073 448 598 5.41E-43 T 13-10-2018 IPR029787 Nucleotide cyclase AP3564_19555 b86c3fb1cd7b1b6cea8071dbae41ed1a 601 Pfam PF00990 Diguanylate cyclase, GGDEF domain 444 592 3.9E-43 T 13-10-2018 IPR000160 GGDEF domain AP3564_19555 b86c3fb1cd7b1b6cea8071dbae41ed1a 601 Gene3D G3DSA:3.30.70.270 437 598 3.1E-49 T 13-10-2018 AP3564_19555 b86c3fb1cd7b1b6cea8071dbae41ed1a 601 Gene3D G3DSA:3.30.450.40 287 436 5.1E-15 T 13-10-2018 IPR029016 GAF-like domain superfamily AP3564_19555 b86c3fb1cd7b1b6cea8071dbae41ed1a 601 SMART SM00267 432 596 9.2E-57 T 13-10-2018 IPR000160 GGDEF domain AP3564_16135 ec32e583f79a7d7120ec657527501454 221 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 25 221 7.5E-93 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AP3564_16135 ec32e583f79a7d7120ec657527501454 221 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 93 107 8.4E-26 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AP3564_16135 ec32e583f79a7d7120ec657527501454 221 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 21 30 8.4E-26 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AP3564_16135 ec32e583f79a7d7120ec657527501454 221 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 143 155 8.4E-26 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AP3564_16135 ec32e583f79a7d7120ec657527501454 221 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 121 133 8.4E-26 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AP3564_16135 ec32e583f79a7d7120ec657527501454 221 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 81 93 8.4E-26 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AP3564_16135 ec32e583f79a7d7120ec657527501454 221 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 211 221 8.4E-26 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AP3564_16135 ec32e583f79a7d7120ec657527501454 221 Pfam PF00813 FliP family 25 217 4.0E-84 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AP3564_16135 ec32e583f79a7d7120ec657527501454 221 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 198 210 - T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AP3564_16135 ec32e583f79a7d7120ec657527501454 221 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 150 170 7.4E-67 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AP3564_16135 ec32e583f79a7d7120ec657527501454 221 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 62 81 7.4E-67 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AP3564_16135 ec32e583f79a7d7120ec657527501454 221 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 23 42 7.4E-67 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AP3564_16135 ec32e583f79a7d7120ec657527501454 221 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 171 192 7.4E-67 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AP3564_16135 ec32e583f79a7d7120ec657527501454 221 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 42 62 7.4E-67 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AP3564_16135 ec32e583f79a7d7120ec657527501454 221 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 195 220 7.4E-67 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AP3564_16135 ec32e583f79a7d7120ec657527501454 221 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 150 165 - T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AP3564_11940 4631714f42b6ec65730e93f25910edf0 274 Gene3D G3DSA:3.40.50.300 3 257 2.2E-66 T 13-10-2018 AP3564_11940 4631714f42b6ec65730e93f25910edf0 274 Pfam PF00005 ABC transporter 20 167 4.3E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_11940 4631714f42b6ec65730e93f25910edf0 274 SUPERFAMILY SSF52540 4 229 2.51E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_11940 4631714f42b6ec65730e93f25910edf0 274 SMART SM00382 28 217 1.9E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_11940 4631714f42b6ec65730e93f25910edf0 274 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_07610 fa574816ef62416c66e3af6ef1b9ece6 503 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 8 494 4.0E-71 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AP3564_07610 fa574816ef62416c66e3af6ef1b9ece6 503 Pfam PF03023 MviN-like protein 29 469 1.5E-66 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AP3564_07610 fa574816ef62416c66e3af6ef1b9ece6 503 PRINTS PR01806 Virulence factor MviN signature 152 173 2.6E-20 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AP3564_07610 fa574816ef62416c66e3af6ef1b9ece6 503 PRINTS PR01806 Virulence factor MviN signature 349 368 2.6E-20 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AP3564_07610 fa574816ef62416c66e3af6ef1b9ece6 503 PRINTS PR01806 Virulence factor MviN signature 401 418 2.6E-20 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AP3564_07610 fa574816ef62416c66e3af6ef1b9ece6 503 PRINTS PR01806 Virulence factor MviN signature 251 277 2.6E-20 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AP3564_07610 fa574816ef62416c66e3af6ef1b9ece6 503 PRINTS PR01806 Virulence factor MviN signature 34 53 2.6E-20 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AP3564_07610 fa574816ef62416c66e3af6ef1b9ece6 503 PRINTS PR01806 Virulence factor MviN signature 128 152 2.6E-20 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AP3564_18500 01cd310b3a1f024440939e88cc48f7f4 364 ProDom PD041835 PROTEASE GERMINATION HYDROLASE SPORE GPR ENDOPEPTIDASE PROTEINASE ZYMOGEN PRECURSOR PEPTIDASE 43 364 3.0E-143 T 13-10-2018 IPR005080 Peptidase A25, germination protease GO:0006508|GO:0008233|GO:0009847 AP3564_18500 01cd310b3a1f024440939e88cc48f7f4 364 SUPERFAMILY SSF53163 4 364 3.27E-129 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily AP3564_18500 01cd310b3a1f024440939e88cc48f7f4 364 PIRSF PIRSF019549 3 364 2.0E-178 T 13-10-2018 IPR005080 Peptidase A25, germination protease GO:0006508|GO:0008233|GO:0009847 AP3564_18500 01cd310b3a1f024440939e88cc48f7f4 364 Pfam PF03418 Germination protease 17 363 1.8E-186 T 13-10-2018 IPR005080 Peptidase A25, germination protease GO:0006508|GO:0008233|GO:0009847 AP3564_18500 01cd310b3a1f024440939e88cc48f7f4 364 TIGRFAM TIGR01441 GPR: GPR endopeptidase 10 364 9.3E-180 T 13-10-2018 IPR005080 Peptidase A25, germination protease GO:0006508|GO:0008233|GO:0009847 AP3564_18500 01cd310b3a1f024440939e88cc48f7f4 364 Hamap MF_00626 Germination protease [gpr]. 1 364 154.294 T 13-10-2018 IPR005080 Peptidase A25, germination protease GO:0006508|GO:0008233|GO:0009847 AP3564_18905 0f0524c0c471b6db3cd08a3c0fb502fd 183 PIRSF PIRSF000232 1 183 4.7E-48 T 13-10-2018 IPR026021 Putative NAD(P)H nitroreductase YdjA-like AP3564_18905 0f0524c0c471b6db3cd08a3c0fb502fd 183 SUPERFAMILY SSF55469 4 180 1.06E-38 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AP3564_18905 0f0524c0c471b6db3cd08a3c0fb502fd 183 Gene3D G3DSA:3.40.109.10 2 182 3.8E-47 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AP3564_18905 0f0524c0c471b6db3cd08a3c0fb502fd 183 Pfam PF00881 Nitroreductase family 10 160 2.2E-28 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 AP3564_03515 85fe80ec0a1e511661166cdd9993e6b8 273 SUPERFAMILY SSF46689 2 68 1.47E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_03515 85fe80ec0a1e511661166cdd9993e6b8 273 Gene3D G3DSA:3.40.50.10490 87 271 1.1E-47 T 13-10-2018 AP3564_03515 85fe80ec0a1e511661166cdd9993e6b8 273 Pfam PF01418 Helix-turn-helix domain, rpiR family 1 68 2.0E-23 T 13-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 AP3564_03515 85fe80ec0a1e511661166cdd9993e6b8 273 Pfam PF01380 SIS domain 119 247 8.2E-20 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AP3564_03515 85fe80ec0a1e511661166cdd9993e6b8 273 Gene3D G3DSA:1.10.10.10 1 74 8.0E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_03515 85fe80ec0a1e511661166cdd9993e6b8 273 SUPERFAMILY SSF53697 90 262 2.22E-42 T 13-10-2018 AP3564_19650 85fe80ec0a1e511661166cdd9993e6b8 273 SUPERFAMILY SSF46689 2 68 1.47E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_19650 85fe80ec0a1e511661166cdd9993e6b8 273 Gene3D G3DSA:3.40.50.10490 87 271 1.1E-47 T 13-10-2018 AP3564_19650 85fe80ec0a1e511661166cdd9993e6b8 273 Pfam PF01418 Helix-turn-helix domain, rpiR family 1 68 2.0E-23 T 13-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 AP3564_19650 85fe80ec0a1e511661166cdd9993e6b8 273 Pfam PF01380 SIS domain 119 247 8.2E-20 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AP3564_19650 85fe80ec0a1e511661166cdd9993e6b8 273 Gene3D G3DSA:1.10.10.10 1 74 8.0E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_19650 85fe80ec0a1e511661166cdd9993e6b8 273 SUPERFAMILY SSF53697 90 262 2.22E-42 T 13-10-2018 AP3564_08140 33e45705454de46254c124d3a82007a4 293 Pfam PF03466 LysR substrate binding domain 89 291 2.4E-50 T 13-10-2018 IPR005119 LysR, substrate-binding AP3564_08140 33e45705454de46254c124d3a82007a4 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.0E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_08140 33e45705454de46254c124d3a82007a4 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.0E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_08140 33e45705454de46254c124d3a82007a4 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.0E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_08140 33e45705454de46254c124d3a82007a4 293 SUPERFAMILY SSF53850 90 290 1.98E-45 T 13-10-2018 AP3564_08140 33e45705454de46254c124d3a82007a4 293 Gene3D G3DSA:3.40.190.290 93 292 7.5E-60 T 13-10-2018 AP3564_08140 33e45705454de46254c124d3a82007a4 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 7.2E-20 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_08140 33e45705454de46254c124d3a82007a4 293 SUPERFAMILY SSF46785 2 86 2.4E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_08140 33e45705454de46254c124d3a82007a4 293 Gene3D G3DSA:1.10.10.10 1 92 6.7E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_03940 963987545ebcb85a95daa9fa85d49903 209 SUPERFAMILY SSF53271 4 207 1.7E-75 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like AP3564_03940 963987545ebcb85a95daa9fa85d49903 209 Pfam PF14681 Uracil phosphoribosyltransferase 6 208 1.6E-76 T 13-10-2018 AP3564_03940 963987545ebcb85a95daa9fa85d49903 209 Gene3D G3DSA:3.40.50.2020 1 209 3.1E-84 T 13-10-2018 AP3564_03940 963987545ebcb85a95daa9fa85d49903 209 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 3 209 48.967 T 13-10-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 AP3564_03940 963987545ebcb85a95daa9fa85d49903 209 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 4 209 7.1E-93 T 13-10-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 AP3564_17035 172befc1c398c39c18bf842938c4d100 134 SMART SM00851 14 107 2.1E-20 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain AP3564_17035 172befc1c398c39c18bf842938c4d100 134 Pfam PF02142 MGS-like domain 15 107 2.2E-16 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain AP3564_17035 172befc1c398c39c18bf842938c4d100 134 PIRSF PIRSF006614 1 134 4.0E-62 T 13-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 AP3564_17035 172befc1c398c39c18bf842938c4d100 134 SUPERFAMILY SSF52335 1 131 3.3E-52 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily AP3564_17035 172befc1c398c39c18bf842938c4d100 134 Gene3D G3DSA:3.40.50.1380 1 133 2.0E-55 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily AP3564_17035 172befc1c398c39c18bf842938c4d100 134 Hamap MF_00549 Methylglyoxal synthase [mgsA]. 1 120 34.185 T 13-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 AP3564_17035 172befc1c398c39c18bf842938c4d100 134 TIGRFAM TIGR00160 MGSA: methylglyoxal synthase 1 121 9.2E-61 T 13-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 AP3564_17035 172befc1c398c39c18bf842938c4d100 134 ProSitePatterns PS01335 Methylglyoxal synthase active site. 54 61 - T 13-10-2018 IPR018148 Methylglyoxal synthase, active site GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 AP3564_16380 2c8ab75a5d33bfd043aef046282500b9 200 Gene3D G3DSA:3.10.129.10 68 187 3.1E-39 T 13-10-2018 AP3564_16380 2c8ab75a5d33bfd043aef046282500b9 200 SUPERFAMILY SSF54637 74 182 5.03E-27 T 13-10-2018 IPR029069 HotDog domain superfamily AP3564_16380 2c8ab75a5d33bfd043aef046282500b9 200 Hamap MF_01814 Transcription factor FapR [fapR]. 1 188 40.139 T 13-10-2018 IPR017275 Transcription factor FapR GO:0003700|GO:0045717|GO:0045892 AP3564_16380 2c8ab75a5d33bfd043aef046282500b9 200 Gene3D G3DSA:1.10.10.10 1 60 3.1E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_16380 2c8ab75a5d33bfd043aef046282500b9 200 SUPERFAMILY SSF46785 5 51 5.63E-6 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_16380 2c8ab75a5d33bfd043aef046282500b9 200 Pfam PF08220 DeoR-like helix-turn-helix domain 8 46 1.6E-5 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AP3564_16380 2c8ab75a5d33bfd043aef046282500b9 200 PIRSF PIRSF037733 1 191 3.8E-86 T 13-10-2018 IPR017275 Transcription factor FapR GO:0003700|GO:0045717|GO:0045892 AP3564_13525 49cf750336cb00d74dd860823920eb90 414 Pfam PF02371 Transposase IS116/IS110/IS902 family 257 342 2.7E-15 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_13525 49cf750336cb00d74dd860823920eb90 414 Pfam PF01548 Transposase 11 155 3.4E-23 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_11945 49cf750336cb00d74dd860823920eb90 414 Pfam PF02371 Transposase IS116/IS110/IS902 family 257 342 2.7E-15 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_11945 49cf750336cb00d74dd860823920eb90 414 Pfam PF01548 Transposase 11 155 3.4E-23 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_01160 49cf750336cb00d74dd860823920eb90 414 Pfam PF02371 Transposase IS116/IS110/IS902 family 257 342 2.7E-15 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_01160 49cf750336cb00d74dd860823920eb90 414 Pfam PF01548 Transposase 11 155 3.4E-23 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_14595 49cf750336cb00d74dd860823920eb90 414 Pfam PF02371 Transposase IS116/IS110/IS902 family 257 342 2.7E-15 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_14595 49cf750336cb00d74dd860823920eb90 414 Pfam PF01548 Transposase 11 155 3.4E-23 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_17605 49cf750336cb00d74dd860823920eb90 414 Pfam PF02371 Transposase IS116/IS110/IS902 family 257 342 2.7E-15 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_17605 49cf750336cb00d74dd860823920eb90 414 Pfam PF01548 Transposase 11 155 3.4E-23 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_18150 dd14bf5dd4b40ba1e311cea57c8f6ade 49 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 1 49 20.41 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_18150 dd14bf5dd4b40ba1e311cea57c8f6ade 49 Pfam PF00471 Ribosomal protein L33 3 49 6.5E-23 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_18150 dd14bf5dd4b40ba1e311cea57c8f6ade 49 ProSitePatterns PS00582 Ribosomal protein L33 signature. 17 36 - T 13-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_18150 dd14bf5dd4b40ba1e311cea57c8f6ade 49 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 3 49 6.8E-21 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_18150 dd14bf5dd4b40ba1e311cea57c8f6ade 49 SUPERFAMILY SSF57829 1 49 1.53E-19 T 13-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 AP3564_18150 dd14bf5dd4b40ba1e311cea57c8f6ade 49 Gene3D G3DSA:2.20.28.120 1 49 6.8E-24 T 13-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_11045 426280c159ad34edfdb0e9ed5041b673 980 PIRSF PIRSF036643 1 964 0.0 T 13-10-2018 AP3564_11045 426280c159ad34edfdb0e9ed5041b673 980 Gene3D G3DSA:2.40.40.20 814 933 6.4E-28 T 13-10-2018 AP3564_11045 426280c159ad34edfdb0e9ed5041b673 980 Gene3D G3DSA:3.30.70.20 127 208 1.7E-21 T 13-10-2018 AP3564_11045 426280c159ad34edfdb0e9ed5041b673 980 TIGRFAM TIGR01591 Fdh-alpha: formate dehydrogenase, alpha subunit 262 930 8.8E-262 T 13-10-2018 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.17.1.9|KEGG: 00680+1.17.1.9|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696|MetaCyc: PWY-7985 AP3564_11045 426280c159ad34edfdb0e9ed5041b673 980 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 83 122 1.1E-10 T 13-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AP3564_11045 426280c159ad34edfdb0e9ed5041b673 980 Pfam PF00384 Molybdopterin oxidoreductase 314 738 1.1E-83 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AP3564_11045 426280c159ad34edfdb0e9ed5041b673 980 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 257 311 3.5E-18 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AP3564_11045 426280c159ad34edfdb0e9ed5041b673 980 Gene3D G3DSA:3.40.50.740 319 780 2.6E-171 T 13-10-2018 AP3564_11045 426280c159ad34edfdb0e9ed5041b673 980 Pfam PF12838 4Fe-4S dicluster domain 146 204 3.2E-8 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AP3564_11045 426280c159ad34edfdb0e9ed5041b673 980 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 190 201 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AP3564_11045 426280c159ad34edfdb0e9ed5041b673 980 SUPERFAMILY SSF54862 128 214 5.58E-18 T 13-10-2018 AP3564_11045 426280c159ad34edfdb0e9ed5041b673 980 Gene3D G3DSA:3.40.228.10 392 591 2.6E-171 T 13-10-2018 AP3564_11045 426280c159ad34edfdb0e9ed5041b673 980 SUPERFAMILY SSF54292 4 125 1.65E-32 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AP3564_11045 426280c159ad34edfdb0e9ed5041b673 980 SUPERFAMILY SSF50692 794 931 2.94E-31 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily AP3564_11045 426280c159ad34edfdb0e9ed5041b673 980 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 262 279 - T 13-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 AP3564_11045 426280c159ad34edfdb0e9ed5041b673 980 SMART SM00929 83 124 4.5E-12 T 13-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AP3564_11045 426280c159ad34edfdb0e9ed5041b673 980 SMART SM00926 257 311 6.0E-20 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AP3564_11045 426280c159ad34edfdb0e9ed5041b673 980 SUPERFAMILY SSF53706 251 777 1.83E-200 T 13-10-2018 AP3564_11045 426280c159ad34edfdb0e9ed5041b673 980 Pfam PF01568 Molydopterin dinucleotide binding domain 821 927 2.2E-18 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 AP3564_11045 426280c159ad34edfdb0e9ed5041b673 980 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 3 76 7.1E-18 T 13-10-2018 AP3564_11045 426280c159ad34edfdb0e9ed5041b673 980 Gene3D G3DSA:2.20.25.90 257 312 2.0E-20 T 13-10-2018 AP3564_11045 426280c159ad34edfdb0e9ed5041b673 980 Gene3D G3DSA:3.10.20.740 3 124 5.6E-30 T 13-10-2018 AP3564_16690 8e3c685c481692f72ddfd2c90a1e944a 324 ProSitePatterns PS01347 MraY family signature 1. 48 60 - T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AP3564_16690 8e3c685c481692f72ddfd2c90a1e944a 324 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 17 323 1.7E-124 T 13-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AP3564_16690 8e3c685c481692f72ddfd2c90a1e944a 324 ProSitePatterns PS01348 MraY family signature 2. 168 179 - T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AP3564_16690 8e3c685c481692f72ddfd2c90a1e944a 324 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 5 322 24.536 T 13-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AP3564_16690 8e3c685c481692f72ddfd2c90a1e944a 324 Pfam PF00953 Glycosyl transferase family 4 83 248 3.1E-38 T 13-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 AP3564_16690 8e3c685c481692f72ddfd2c90a1e944a 324 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 48 60 1.4E-5 T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AP3564_17210 804056069e40b254746ea8f46b35085d 75 PRINTS PR00687 Tryptophan RNA-binding attenuator protein signature 8 25 2.4E-37 T 13-10-2018 IPR000824 Transcription attenuation protein MtrB GO:0003723|GO:0006353|GO:0006355 AP3564_17210 804056069e40b254746ea8f46b35085d 75 PRINTS PR00687 Tryptophan RNA-binding attenuator protein signature 25 41 2.4E-37 T 13-10-2018 IPR000824 Transcription attenuation protein MtrB GO:0003723|GO:0006353|GO:0006355 AP3564_17210 804056069e40b254746ea8f46b35085d 75 PRINTS PR00687 Tryptophan RNA-binding attenuator protein signature 41 57 2.4E-37 T 13-10-2018 IPR000824 Transcription attenuation protein MtrB GO:0003723|GO:0006353|GO:0006355 AP3564_17210 804056069e40b254746ea8f46b35085d 75 PRINTS PR00687 Tryptophan RNA-binding attenuator protein signature 57 73 2.4E-37 T 13-10-2018 IPR000824 Transcription attenuation protein MtrB GO:0003723|GO:0006353|GO:0006355 AP3564_17210 804056069e40b254746ea8f46b35085d 75 Gene3D G3DSA:2.60.40.50 1 75 2.6E-43 T 13-10-2018 IPR016031 Tryptophan RNA-binding attenuator protein-like domain superfamily AP3564_17210 804056069e40b254746ea8f46b35085d 75 Pfam PF02081 Tryptophan RNA-binding attenuator protein 5 71 1.1E-41 T 13-10-2018 IPR023558 Tryptophan RNA-binding attenuator protein domain AP3564_17210 804056069e40b254746ea8f46b35085d 75 Hamap MF_00798 Transcription attenuation protein MtrB [mtrB]. 1 72 28.271 T 13-10-2018 IPR000824 Transcription attenuation protein MtrB GO:0003723|GO:0006353|GO:0006355 AP3564_17210 804056069e40b254746ea8f46b35085d 75 SUPERFAMILY SSF51219 6 73 5.23E-37 T 13-10-2018 IPR016031 Tryptophan RNA-binding attenuator protein-like domain superfamily AP3564_19230 41410627bde636141def6c0bc0a32b55 250 Gene3D G3DSA:3.30.1330.30 2 97 9.3E-25 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like AP3564_19230 41410627bde636141def6c0bc0a32b55 250 Gene3D G3DSA:3.40.1280.10 99 250 1.5E-51 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AP3564_19230 41410627bde636141def6c0bc0a32b55 250 Pfam PF00588 SpoU rRNA Methylase family 109 246 9.9E-37 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AP3564_19230 41410627bde636141def6c0bc0a32b55 250 SUPERFAMILY SSF55315 2 97 1.65E-23 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like AP3564_19230 41410627bde636141def6c0bc0a32b55 250 SMART SM00967 31 100 9.7E-14 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 AP3564_19230 41410627bde636141def6c0bc0a32b55 250 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 31 98 4.2E-11 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 AP3564_19230 41410627bde636141def6c0bc0a32b55 250 SUPERFAMILY SSF75217 88 249 1.24E-41 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases AP3564_01440 fd6ad2d9fd60f4471bfd0c1fe1cfe0ba 263 Pfam PF00005 ABC transporter 28 168 9.0E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_01440 fd6ad2d9fd60f4471bfd0c1fe1cfe0ba 263 SMART SM00382 37 218 1.2E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_01440 fd6ad2d9fd60f4471bfd0c1fe1cfe0ba 263 SUPERFAMILY SSF52540 8 247 2.47E-71 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_01440 fd6ad2d9fd60f4471bfd0c1fe1cfe0ba 263 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_01440 fd6ad2d9fd60f4471bfd0c1fe1cfe0ba 263 Gene3D G3DSA:3.40.50.300 5 240 5.3E-66 T 13-10-2018 AP3564_12790 d720b4a6d54ea37c96ff044df39e36af 379 SUPERFAMILY SSF53756 5 364 5.76E-42 T 13-10-2018 AP3564_12790 d720b4a6d54ea37c96ff044df39e36af 379 Pfam PF00534 Glycosyl transferases group 1 199 346 5.1E-16 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 AP3564_12790 d720b4a6d54ea37c96ff044df39e36af 379 Pfam PF06925 Monogalactosyldiacylglycerol (MGDG) synthase 17 177 1.2E-42 T 13-10-2018 IPR009695 Diacylglycerol glucosyltransferase, N-terminal GO:0009247|GO:0016758 AP3564_12790 d720b4a6d54ea37c96ff044df39e36af 379 Gene3D G3DSA:3.40.50.2000 187 350 5.0E-31 T 13-10-2018 AP3564_05610 6684c3df0e291442a4071bc6e9b4bd89 159 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 3 157 1.2E-73 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AP3564_05610 6684c3df0e291442a4071bc6e9b4bd89 159 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 36 51 - T 13-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AP3564_05610 6684c3df0e291442a4071bc6e9b4bd89 159 SUPERFAMILY SSF69765 1 157 4.06E-68 T 13-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AP3564_05610 6684c3df0e291442a4071bc6e9b4bd89 159 Pfam PF02542 YgbB family 2 156 1.6E-67 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AP3564_05610 6684c3df0e291442a4071bc6e9b4bd89 159 Gene3D G3DSA:3.30.1330.50 1 159 8.5E-71 T 13-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AP3564_05610 6684c3df0e291442a4071bc6e9b4bd89 159 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 2 157 37.598 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AP3564_06630 e85f06e212cf4cae14b3726a986e6700 286 Pfam PF03881 Fructosamine kinase 12 283 8.2E-80 T 13-10-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 AP3564_06630 e85f06e212cf4cae14b3726a986e6700 286 Gene3D G3DSA:3.90.1200.10 93 286 6.4E-53 T 13-10-2018 AP3564_06630 e85f06e212cf4cae14b3726a986e6700 286 PIRSF PIRSF006221 1 286 4.2E-80 T 13-10-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 AP3564_06630 e85f06e212cf4cae14b3726a986e6700 286 SUPERFAMILY SSF56112 18 282 3.46E-49 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily AP3564_06630 e85f06e212cf4cae14b3726a986e6700 286 Gene3D G3DSA:3.30.200.20 1 92 2.3E-18 T 13-10-2018 AP3564_03290 dc3008d436e41d45684ffa2aa1582544 148 SUPERFAMILY SSF55729 31 141 2.33E-16 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase AP3564_03290 dc3008d436e41d45684ffa2aa1582544 148 Pfam PF00583 Acetyltransferase (GNAT) family 42 130 4.6E-10 T 13-10-2018 IPR000182 GNAT domain AP3564_03290 dc3008d436e41d45684ffa2aa1582544 148 Gene3D G3DSA:3.40.630.30 8 145 2.8E-17 T 13-10-2018 AP3564_08715 84d674bbb578cc964d8870bcad2f613d 335 Gene3D G3DSA:3.40.50.2300 61 309 4.5E-62 T 13-10-2018 AP3564_08715 84d674bbb578cc964d8870bcad2f613d 335 Gene3D G3DSA:3.40.50.2300 159 289 4.5E-62 T 13-10-2018 AP3564_08715 84d674bbb578cc964d8870bcad2f613d 335 SUPERFAMILY SSF47413 3 60 1.58E-17 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AP3564_08715 84d674bbb578cc964d8870bcad2f613d 335 SMART SM00354 2 72 4.9E-25 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AP3564_08715 84d674bbb578cc964d8870bcad2f613d 335 ProSitePatterns PS00356 LacI-type HTH domain signature. 5 23 - T 13-10-2018 AP3564_08715 84d674bbb578cc964d8870bcad2f613d 335 Gene3D G3DSA:1.10.260.40 1 60 7.4E-23 T 13-10-2018 AP3564_08715 84d674bbb578cc964d8870bcad2f613d 335 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 48 1.9E-18 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AP3564_08715 84d674bbb578cc964d8870bcad2f613d 335 Pfam PF13377 Periplasmic binding protein-like domain 168 329 1.3E-32 T 13-10-2018 AP3564_08715 84d674bbb578cc964d8870bcad2f613d 335 SUPERFAMILY SSF53822 63 332 4.53E-59 T 13-10-2018 IPR028082 Periplasmic binding protein-like I AP3564_08715 84d674bbb578cc964d8870bcad2f613d 335 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 14 24 9.9E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AP3564_08715 84d674bbb578cc964d8870bcad2f613d 335 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 4 14 9.9E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AP3564_16125 627aaa4547337ad7ed083689ec92beca 258 Pfam PF01311 Bacterial export proteins, family 1 9 242 7.4E-72 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AP3564_16125 627aaa4547337ad7ed083689ec92beca 258 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 73 92 7.0E-26 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AP3564_16125 627aaa4547337ad7ed083689ec92beca 258 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 176 198 7.0E-26 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AP3564_16125 627aaa4547337ad7ed083689ec92beca 258 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 198 217 7.0E-26 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AP3564_16125 627aaa4547337ad7ed083689ec92beca 258 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 16 37 7.0E-26 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AP3564_16125 627aaa4547337ad7ed083689ec92beca 258 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 9 251 5.3E-70 T 13-10-2018 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 AP3564_14290 081025054ffc0725b659b5f8405ac1fb 315 Gene3D G3DSA:1.10.1660.10 4 55 2.7E-10 T 13-10-2018 AP3564_14290 081025054ffc0725b659b5f8405ac1fb 315 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 7 54 2.8E-17 T 13-10-2018 IPR010093 SinI-like, DNA-binding domain GO:0003677 AP3564_14290 081025054ffc0725b659b5f8405ac1fb 315 Pfam PF12727 PBP superfamily domain 99 288 1.5E-54 T 13-10-2018 IPR024370 PBP domain AP3564_14290 081025054ffc0725b659b5f8405ac1fb 315 Pfam PF12728 Helix-turn-helix domain 7 54 4.5E-17 T 13-10-2018 AP3564_14290 081025054ffc0725b659b5f8405ac1fb 315 Gene3D G3DSA:3.40.190.10 166 268 1.1E-8 T 13-10-2018 AP3564_14290 081025054ffc0725b659b5f8405ac1fb 315 SUPERFAMILY SSF46955 7 52 1.34E-5 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily AP3564_14290 081025054ffc0725b659b5f8405ac1fb 315 SUPERFAMILY SSF53850 94 303 9.59E-17 T 13-10-2018 AP3564_08805 da95d9a4a6a0e2e13ab7810b5746f6df 248 Gene3D G3DSA:3.40.50.1820 1 246 2.7E-62 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold AP3564_08805 da95d9a4a6a0e2e13ab7810b5746f6df 248 SUPERFAMILY SSF53474 5 245 5.74E-38 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold AP3564_08805 da95d9a4a6a0e2e13ab7810b5746f6df 248 Pfam PF12146 Serine aminopeptidase, S33 16 228 8.2E-18 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 AP3564_08805 da95d9a4a6a0e2e13ab7810b5746f6df 248 PIRSF PIRSF017388 1 246 3.7E-96 T 13-10-2018 IPR012354 Esterase/lipase GO:0052689 AP3564_19045 fb6343a2e50937192717b3627a67555c 326 Pfam PF14559 Tetratricopeptide repeat 26 80 8.1E-8 T 13-10-2018 AP3564_19045 fb6343a2e50937192717b3627a67555c 326 SUPERFAMILY SSF48452 14 114 2.9E-14 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AP3564_19045 fb6343a2e50937192717b3627a67555c 326 SUPERFAMILY SSF116965 65 297 5.49E-12 T 13-10-2018 AP3564_19045 fb6343a2e50937192717b3627a67555c 326 Gene3D G3DSA:1.25.40.10 11 126 4.6E-14 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AP3564_16020 4ee2f19ff8340ea1b0dacbeeabf8814a 1441 Gene3D G3DSA:3.20.20.140 559 809 3.1E-51 T 13-10-2018 AP3564_16020 4ee2f19ff8340ea1b0dacbeeabf8814a 1441 Pfam PF00929 Exonuclease 426 581 4.2E-44 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AP3564_16020 4ee2f19ff8340ea1b0dacbeeabf8814a 1441 SUPERFAMILY SSF53098 424 881 3.79E-111 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_16020 4ee2f19ff8340ea1b0dacbeeabf8814a 1441 Gene3D G3DSA:1.10.150.870 1291 1427 1.0E-55 T 13-10-2018 AP3564_16020 4ee2f19ff8340ea1b0dacbeeabf8814a 1441 SMART SM00481 339 406 1.8E-27 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal AP3564_16020 4ee2f19ff8340ea1b0dacbeeabf8814a 1441 Pfam PF14480 DNA polymerase III polC-type N-terminus I 12 84 2.0E-21 T 13-10-2018 IPR028112 DNA polymerase III polC-type, N-terminal domain I KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AP3564_16020 4ee2f19ff8340ea1b0dacbeeabf8814a 1441 Pfam PF14579 Helix-hairpin-helix motif 1355 1434 6.1E-10 T 13-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AP3564_16020 4ee2f19ff8340ea1b0dacbeeabf8814a 1441 Gene3D G3DSA:2.40.50.140 223 324 5.8E-34 T 13-10-2018 AP3564_16020 4ee2f19ff8340ea1b0dacbeeabf8814a 1441 Gene3D G3DSA:3.30.420.10 414 558 6.1E-46 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AP3564_16020 4ee2f19ff8340ea1b0dacbeeabf8814a 1441 SMART SM00479 424 591 5.1E-56 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AP3564_16020 4ee2f19ff8340ea1b0dacbeeabf8814a 1441 Gene3D G3DSA:3.30.1900.20 977 1099 1.2E-60 T 13-10-2018 AP3564_16020 4ee2f19ff8340ea1b0dacbeeabf8814a 1441 Pfam PF02811 PHP domain 340 698 6.2E-54 T 13-10-2018 IPR004013 PHP domain GO:0003824 AP3564_16020 4ee2f19ff8340ea1b0dacbeeabf8814a 1441 Gene3D G3DSA:1.10.100.20 999 1046 1.2E-60 T 13-10-2018 AP3564_16020 4ee2f19ff8340ea1b0dacbeeabf8814a 1441 SUPERFAMILY SSF160975 1380 1423 3.01E-5 T 13-10-2018 AP3564_16020 4ee2f19ff8340ea1b0dacbeeabf8814a 1441 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 829 1247 2.0E-99 T 13-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AP3564_16020 4ee2f19ff8340ea1b0dacbeeabf8814a 1441 SUPERFAMILY SSF50249 238 323 1.2E-11 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_16020 4ee2f19ff8340ea1b0dacbeeabf8814a 1441 Pfam PF11490 DNA polymerase III polC-type N-terminus II 98 209 5.9E-24 T 13-10-2018 IPR024754 DNA polymerase III polC-like, N-terminal domain II KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AP3564_16020 4ee2f19ff8340ea1b0dacbeeabf8814a 1441 Gene3D G3DSA:1.10.150.700 1211 1290 5.4E-14 T 13-10-2018 AP3564_16020 4ee2f19ff8340ea1b0dacbeeabf8814a 1441 Gene3D G3DSA:1.10.150.700 1100 1188 2.5E-36 T 13-10-2018 AP3564_16020 4ee2f19ff8340ea1b0dacbeeabf8814a 1441 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 417 641 4.5E-65 T 13-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AP3564_16020 4ee2f19ff8340ea1b0dacbeeabf8814a 1441 Hamap MF_00356 DNA polymerase III PolC-type [polC]. 1 1441 462.528 T 13-10-2018 IPR006308 DNA polymerase III, alpha subunit, Gram-positive type GO:0003677|GO:0003887|GO:0005737|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AP3564_16020 4ee2f19ff8340ea1b0dacbeeabf8814a 1441 TIGRFAM TIGR01405 polC_Gram_pos: DNA polymerase III, alpha subunit, Gram-positive type 234 1441 0.0 T 13-10-2018 IPR006308 DNA polymerase III, alpha subunit, Gram-positive type GO:0003677|GO:0003887|GO:0005737|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AP3564_12205 426f34cfee085c6c2abd138665a9e72e 120 SUPERFAMILY SSF49472 1 120 2.62E-39 T 13-10-2018 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 AP3564_12205 426f34cfee085c6c2abd138665a9e72e 120 Gene3D G3DSA:2.60.40.180 1 120 3.8E-39 T 13-10-2018 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 AP3564_12205 426f34cfee085c6c2abd138665a9e72e 120 ProSitePatterns PS00769 Transthyretin signature 2. 103 115 - T 13-10-2018 IPR023419 Transthyretin, conserved site Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 AP3564_12205 426f34cfee085c6c2abd138665a9e72e 120 TIGRFAM TIGR02962 hdxy_isourate: hydroxyisourate hydrolase 2 120 6.1E-39 T 13-10-2018 IPR014306 Hydroxyisourate hydrolase GO:0006144|GO:0033971 KEGG: 00230+3.5.2.17|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 AP3564_12205 426f34cfee085c6c2abd138665a9e72e 120 ProSitePatterns PS00768 Transthyretin signature 1. 7 22 - T 13-10-2018 IPR023418 Transthyretin, thyroxine binding site Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 AP3564_12205 426f34cfee085c6c2abd138665a9e72e 120 Pfam PF00576 HIUase/Transthyretin family 4 119 1.2E-34 T 13-10-2018 IPR023416 Transthyretin/hydroxyisourate hydrolase domain Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 AP3564_14225 0b0ea0d98be5d3a8600fbe5fbe507148 524 SMART SM00382 296 457 5.9E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_14225 0b0ea0d98be5d3a8600fbe5fbe507148 524 SMART SM00382 28 151 1.7E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_14225 0b0ea0d98be5d3a8600fbe5fbe507148 524 ProSitePatterns PS00211 ABC transporters family signature. 384 398 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_14225 0b0ea0d98be5d3a8600fbe5fbe507148 524 Pfam PF00005 ABC transporter 23 65 2.3E-8 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_14225 0b0ea0d98be5d3a8600fbe5fbe507148 524 SUPERFAMILY SSF52540 4 168 6.19E-32 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_14225 0b0ea0d98be5d3a8600fbe5fbe507148 524 Pfam PF00005 ABC transporter 288 412 1.9E-17 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_14225 0b0ea0d98be5d3a8600fbe5fbe507148 524 Gene3D G3DSA:3.40.50.300 234 490 2.2E-50 T 13-10-2018 AP3564_14225 0b0ea0d98be5d3a8600fbe5fbe507148 524 Gene3D G3DSA:3.40.50.300 2 71 5.8E-10 T 13-10-2018 AP3564_14225 0b0ea0d98be5d3a8600fbe5fbe507148 524 Gene3D G3DSA:3.40.50.300 72 205 1.1E-29 T 13-10-2018 AP3564_14225 0b0ea0d98be5d3a8600fbe5fbe507148 524 SUPERFAMILY SSF52540 260 476 5.94E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_14225 0b0ea0d98be5d3a8600fbe5fbe507148 524 Pfam PF12848 ABC transporter 146 252 1.5E-8 T 13-10-2018 IPR032781 ABC-transporter extension domain AP3564_05590 8efb1366d39517733adb247cbea2ee3b 458 SUPERFAMILY SSF54211 255 456 1.18E-42 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AP3564_05590 8efb1366d39517733adb247cbea2ee3b 458 Gene3D G3DSA:3.40.50.300 63 288 4.6E-44 T 13-10-2018 AP3564_05590 8efb1366d39517733adb247cbea2ee3b 458 SMART SM00382 90 244 6.1E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_05590 8efb1366d39517733adb247cbea2ee3b 458 PRINTS PR01874 DNA repair protein radA signature 10 34 8.8E-94 T 13-10-2018 AP3564_05590 8efb1366d39517733adb247cbea2ee3b 458 PRINTS PR01874 DNA repair protein radA signature 213 241 8.8E-94 T 13-10-2018 AP3564_05590 8efb1366d39517733adb247cbea2ee3b 458 PRINTS PR01874 DNA repair protein radA signature 174 198 8.8E-94 T 13-10-2018 AP3564_05590 8efb1366d39517733adb247cbea2ee3b 458 PRINTS PR01874 DNA repair protein radA signature 248 274 8.8E-94 T 13-10-2018 AP3564_05590 8efb1366d39517733adb247cbea2ee3b 458 PRINTS PR01874 DNA repair protein radA signature 124 141 8.8E-94 T 13-10-2018 AP3564_05590 8efb1366d39517733adb247cbea2ee3b 458 PRINTS PR01874 DNA repair protein radA signature 322 345 8.8E-94 T 13-10-2018 AP3564_05590 8efb1366d39517733adb247cbea2ee3b 458 PRINTS PR01874 DNA repair protein radA signature 82 110 8.8E-94 T 13-10-2018 AP3564_05590 8efb1366d39517733adb247cbea2ee3b 458 Hamap MF_01498 DNA repair protein RadA [radA]. 21 456 45.406 T 13-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 AP3564_05590 8efb1366d39517733adb247cbea2ee3b 458 Pfam PF13481 AAA domain 81 222 4.1E-15 T 13-10-2018 AP3564_05590 8efb1366d39517733adb247cbea2ee3b 458 SUPERFAMILY SSF52540 71 291 7.96E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_05590 8efb1366d39517733adb247cbea2ee3b 458 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 452 1.7E-213 T 13-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 AP3564_05590 8efb1366d39517733adb247cbea2ee3b 458 Gene3D G3DSA:3.30.230.10 326 457 4.9E-21 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AP3564_05590 8efb1366d39517733adb247cbea2ee3b 458 Pfam PF13541 Subunit ChlI of Mg-chelatase 366 430 1.5E-8 T 13-10-2018 AP3564_17040 e2f16c7f152d22b0156c6af750cc6ce4 259 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 4 259 30.71 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AP3564_17040 e2f16c7f152d22b0156c6af750cc6ce4 259 SUPERFAMILY SSF55347 122 230 6.54E-39 T 13-10-2018 AP3564_17040 e2f16c7f152d22b0156c6af750cc6ce4 259 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 4 259 8.1E-89 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AP3564_17040 e2f16c7f152d22b0156c6af750cc6ce4 259 Gene3D G3DSA:3.30.360.10 122 228 1.7E-75 T 13-10-2018 AP3564_17040 e2f16c7f152d22b0156c6af750cc6ce4 259 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 124 257 1.7E-33 T 13-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AP3564_17040 e2f16c7f152d22b0156c6af750cc6ce4 259 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 143 160 - T 13-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AP3564_17040 e2f16c7f152d22b0156c6af750cc6ce4 259 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 4 121 2.8E-30 T 13-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AP3564_17040 e2f16c7f152d22b0156c6af750cc6ce4 259 Gene3D G3DSA:3.40.50.720 6 246 1.7E-75 T 13-10-2018 AP3564_17040 e2f16c7f152d22b0156c6af750cc6ce4 259 PIRSF PIRSF000161 2 259 5.8E-72 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AP3564_17040 e2f16c7f152d22b0156c6af750cc6ce4 259 SUPERFAMILY SSF51735 3 147 1.86E-36 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_09810 e1aec36022d667f5ba16c63c88ce4794 168 Pfam PF00717 Peptidase S24-like 30 99 3.3E-18 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AP3564_09810 e1aec36022d667f5ba16c63c88ce4794 168 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 133 152 4.2E-18 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AP3564_09810 e1aec36022d667f5ba16c63c88ce4794 168 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 24 40 4.2E-18 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AP3564_09810 e1aec36022d667f5ba16c63c88ce4794 168 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 75 87 4.2E-18 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AP3564_09810 e1aec36022d667f5ba16c63c88ce4794 168 ProSitePatterns PS00760 Signal peptidases I lysine active site. 77 89 - T 13-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 AP3564_09810 e1aec36022d667f5ba16c63c88ce4794 168 SUPERFAMILY SSF51306 26 167 4.36E-45 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily AP3564_09810 e1aec36022d667f5ba16c63c88ce4794 168 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 10 166 1.0E-45 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AP3564_09810 e1aec36022d667f5ba16c63c88ce4794 168 ProSitePatterns PS00761 Signal peptidases I signature 3. 138 151 - T 13-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 AP3564_09810 e1aec36022d667f5ba16c63c88ce4794 168 Gene3D G3DSA:2.10.109.10 54 168 7.8E-40 T 13-10-2018 AP3564_09810 e1aec36022d667f5ba16c63c88ce4794 168 ProSitePatterns PS00501 Signal peptidases I serine active site. 33 40 - T 13-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 AP3564_18405 23fc86ab95bff404958a7906b24486d2 443 Pfam PF01957 NfeD-like C-terminal, partner-binding 290 438 9.1E-15 T 13-10-2018 IPR002810 NfeD-like, C-terminal domain AP3564_18405 23fc86ab95bff404958a7906b24486d2 443 Pfam PF01972 Serine dehydrogenase proteinase 35 125 4.1E-6 T 13-10-2018 IPR002825 Peptidase S49, serine-peptidase prokaryotes GO:0016021 AP3564_18405 23fc86ab95bff404958a7906b24486d2 443 SUPERFAMILY SSF52096 17 195 1.13E-21 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AP3564_18405 23fc86ab95bff404958a7906b24486d2 443 Gene3D G3DSA:2.40.50.140 377 443 1.1E-8 T 13-10-2018 AP3564_18405 23fc86ab95bff404958a7906b24486d2 443 Gene3D G3DSA:3.90.226.10 27 238 1.8E-49 T 13-10-2018 AP3564_18405 23fc86ab95bff404958a7906b24486d2 443 SUPERFAMILY SSF141322 377 440 4.45E-6 T 13-10-2018 AP3564_13485 d51c0c4f43b4403433932185a04e1cd1 251 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 4 235 5.3E-27 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 AP3564_17865 99cd60804d0277e4091f25624c5d53ae 449 SUPERFAMILY SSF51246 332 445 1.46E-47 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AP3564_17865 99cd60804d0277e4091f25624c5d53ae 449 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 287 294 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AP3564_17865 99cd60804d0277e4091f25624c5d53ae 449 Gene3D G3DSA:3.30.470.20 87 443 3.8E-162 T 13-10-2018 AP3564_17865 99cd60804d0277e4091f25624c5d53ae 449 Gene3D G3DSA:3.40.50.20 2 85 7.1E-38 T 13-10-2018 AP3564_17865 99cd60804d0277e4091f25624c5d53ae 449 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 1.7E-46 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AP3564_17865 99cd60804d0277e4091f25624c5d53ae 449 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 447 1.6E-237 T 13-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 AP3564_17865 99cd60804d0277e4091f25624c5d53ae 449 SUPERFAMILY SSF52440 1 113 7.91E-50 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AP3564_17865 99cd60804d0277e4091f25624c5d53ae 449 Gene3D G3DSA:3.30.1490.20 131 202 3.8E-162 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AP3564_17865 99cd60804d0277e4091f25624c5d53ae 449 Pfam PF02785 Biotin carboxylase C-terminal domain 337 443 8.0E-45 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AP3564_17865 99cd60804d0277e4091f25624c5d53ae 449 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AP3564_17865 99cd60804d0277e4091f25624c5d53ae 449 SUPERFAMILY SSF56059 83 349 4.6E-72 T 13-10-2018 AP3564_17865 99cd60804d0277e4091f25624c5d53ae 449 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 323 3.6E-84 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AP3564_17865 99cd60804d0277e4091f25624c5d53ae 449 SMART SM00878 337 443 7.1E-72 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AP3564_05305 f7918b2d40fbc9b3947a55cae210a0fe 476 PRINTS PR00095 Anthranilate synthase component I signature 410 424 7.5E-21 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AP3564_05305 f7918b2d40fbc9b3947a55cae210a0fe 476 PRINTS PR00095 Anthranilate synthase component I signature 395 409 7.5E-21 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AP3564_05305 f7918b2d40fbc9b3947a55cae210a0fe 476 PRINTS PR00095 Anthranilate synthase component I signature 301 314 7.5E-21 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AP3564_05305 f7918b2d40fbc9b3947a55cae210a0fe 476 PRINTS PR00095 Anthranilate synthase component I signature 315 328 7.5E-21 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AP3564_05305 f7918b2d40fbc9b3947a55cae210a0fe 476 Pfam PF04715 Anthranilate synthase component I, N terminal region 19 151 6.9E-33 T 13-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AP3564_05305 f7918b2d40fbc9b3947a55cae210a0fe 476 Pfam PF00425 chorismate binding enzyme 201 453 6.2E-97 T 13-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal AP3564_05305 f7918b2d40fbc9b3947a55cae210a0fe 476 SUPERFAMILY SSF56322 10 460 1.22E-147 T 13-10-2018 IPR005801 ADC synthase GO:0009058 AP3564_05305 f7918b2d40fbc9b3947a55cae210a0fe 476 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 104 456 2.2E-99 T 13-10-2018 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543 AP3564_05305 f7918b2d40fbc9b3947a55cae210a0fe 476 Gene3D G3DSA:3.60.120.10 3 469 9.9E-165 T 13-10-2018 IPR005801 ADC synthase GO:0009058 AP3564_13650 c8ef7cd2083b34a8665918bb70f5cfbf 88 Pfam PF00581 Rhodanese-like domain 9 78 4.7E-5 T 13-10-2018 IPR001763 Rhodanese-like domain AP3564_13650 c8ef7cd2083b34a8665918bb70f5cfbf 88 SUPERFAMILY SSF52821 2 79 1.3E-11 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily AP3564_13650 c8ef7cd2083b34a8665918bb70f5cfbf 88 Gene3D G3DSA:3.40.250.10 1 82 1.9E-11 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily AP3564_16035 ef380599107d77236ef45dff6dcbd2e3 382 Pfam PF13288 DXP reductoisomerase C-terminal domain 258 375 3.5E-42 T 13-10-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AP3564_16035 ef380599107d77236ef45dff6dcbd2e3 382 PIRSF PIRSF006205 1 382 3.9E-163 T 13-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AP3564_16035 ef380599107d77236ef45dff6dcbd2e3 382 SUPERFAMILY SSF55347 123 261 2.45E-62 T 13-10-2018 AP3564_16035 ef380599107d77236ef45dff6dcbd2e3 382 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 377 1.2E-168 T 13-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AP3564_16035 ef380599107d77236ef45dff6dcbd2e3 382 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 4 380 47.554 T 13-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AP3564_16035 ef380599107d77236ef45dff6dcbd2e3 382 Gene3D G3DSA:1.10.1740.10 300 382 5.1E-27 T 13-10-2018 AP3564_16035 ef380599107d77236ef45dff6dcbd2e3 382 SUPERFAMILY SSF69055 289 381 2.62E-31 T 13-10-2018 IPR036169 DXP reductoisomerase, C-terminal domain superfamily KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AP3564_16035 ef380599107d77236ef45dff6dcbd2e3 382 Gene3D G3DSA:3.40.50.720 1 147 9.7E-49 T 13-10-2018 AP3564_16035 ef380599107d77236ef45dff6dcbd2e3 382 SUPERFAMILY SSF51735 2 147 1.58E-42 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_16035 ef380599107d77236ef45dff6dcbd2e3 382 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 4 129 1.2E-41 T 13-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AP3564_16035 ef380599107d77236ef45dff6dcbd2e3 382 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 143 226 3.2E-43 T 13-10-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AP3564_18370 500c70e06b6c467851b9a5a055454e2e 158 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 122 132 - T 13-10-2018 IPR020549 Endoribonuclease YbeY, conserved site AP3564_18370 500c70e06b6c467851b9a5a055454e2e 158 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 40 152 4.9E-43 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 AP3564_18370 500c70e06b6c467851b9a5a055454e2e 158 SUPERFAMILY SSF55486 3 156 1.71E-45 T 13-10-2018 AP3564_18370 500c70e06b6c467851b9a5a055454e2e 158 Gene3D G3DSA:3.40.390.30 1 157 1.3E-47 T 13-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 AP3564_18370 500c70e06b6c467851b9a5a055454e2e 158 Pfam PF02130 Uncharacterized protein family UPF0054 17 152 9.2E-49 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 AP3564_18370 500c70e06b6c467851b9a5a055454e2e 158 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 4 156 24.733 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 AP3564_14380 f3a3432d4f2231764488d98fd26005c0 148 Pfam PF01047 MarR family 30 87 9.5E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_14380 f3a3432d4f2231764488d98fd26005c0 148 PRINTS PR00598 Bacterial regulatory protein MarR family signature 64 79 9.9E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_14380 f3a3432d4f2231764488d98fd26005c0 148 PRINTS PR00598 Bacterial regulatory protein MarR family signature 83 99 9.9E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_14380 f3a3432d4f2231764488d98fd26005c0 148 PRINTS PR00598 Bacterial regulatory protein MarR family signature 47 63 9.9E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_14380 f3a3432d4f2231764488d98fd26005c0 148 PRINTS PR00598 Bacterial regulatory protein MarR family signature 113 133 9.9E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_14380 f3a3432d4f2231764488d98fd26005c0 148 SUPERFAMILY SSF46785 22 137 7.35E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_14380 f3a3432d4f2231764488d98fd26005c0 148 Gene3D G3DSA:1.10.10.10 1 138 3.6E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_14380 f3a3432d4f2231764488d98fd26005c0 148 SMART SM00347 23 123 4.7E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_16300 b2626353f66de8aff978ce32e96d85e6 113 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 2 113 31.464 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_16300 b2626353f66de8aff978ce32e96d85e6 113 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 2 113 5.2E-53 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_16300 b2626353f66de8aff978ce32e96d85e6 113 SUPERFAMILY SSF50104 2 113 1.2E-50 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily AP3564_16300 b2626353f66de8aff978ce32e96d85e6 113 Pfam PF01245 Ribosomal protein L19 4 113 3.0E-55 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_16300 b2626353f66de8aff978ce32e96d85e6 113 ProSitePatterns PS01015 Ribosomal protein L19 signature. 86 101 - T 13-10-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_16300 b2626353f66de8aff978ce32e96d85e6 113 PRINTS PR00061 Ribosomal protein L19 signature 88 113 9.8E-43 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_16300 b2626353f66de8aff978ce32e96d85e6 113 PRINTS PR00061 Ribosomal protein L19 signature 34 63 9.8E-43 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_16300 b2626353f66de8aff978ce32e96d85e6 113 PRINTS PR00061 Ribosomal protein L19 signature 4 33 9.8E-43 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_16300 b2626353f66de8aff978ce32e96d85e6 113 PIRSF PIRSF002191 1 113 4.1E-53 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_16300 b2626353f66de8aff978ce32e96d85e6 113 Gene3D G3DSA:2.30.30.790 2 112 9.2E-16 T 13-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_09590 d491eb0dc05e51777f6dc8f8737b0b0b 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 197 211 6.5E-8 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AP3564_09590 d491eb0dc05e51777f6dc8f8737b0b0b 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 37 52 6.5E-8 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AP3564_09590 d491eb0dc05e51777f6dc8f8737b0b0b 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 84 97 6.5E-8 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AP3564_09590 d491eb0dc05e51777f6dc8f8737b0b0b 259 Pfam PF12146 Serine aminopeptidase, S33 8 242 9.2E-61 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 AP3564_09590 d491eb0dc05e51777f6dc8f8737b0b0b 259 Gene3D G3DSA:3.40.50.1820 1 259 3.9E-55 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold AP3564_09590 d491eb0dc05e51777f6dc8f8737b0b0b 259 SUPERFAMILY SSF53474 6 258 1.62E-38 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold AP3564_07615 bb417f477240f4a11c2e260596a05d0d 361 ProSitePatterns PS01348 MraY family signature 2. 148 159 - T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AP3564_07615 bb417f477240f4a11c2e260596a05d0d 361 Pfam PF00953 Glycosyl transferase family 4 72 228 3.3E-44 T 13-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 AP3564_16720 0d7f3d13527ddb8c13b5bf4fd28b035c 143 SUPERFAMILY SSF89447 1 136 4.88E-53 T 13-10-2018 IPR037914 SpoVT-AbrB domain superfamily AP3564_16720 0d7f3d13527ddb8c13b5bf4fd28b035c 143 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 1 138 8.0E-64 T 13-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 AP3564_16720 0d7f3d13527ddb8c13b5bf4fd28b035c 143 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 1 143 2.0E-63 T 13-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 AP3564_16720 0d7f3d13527ddb8c13b5bf4fd28b035c 143 Pfam PF02381 MraZ protein, putative antitoxin-like 1 70 4.9E-24 T 13-10-2018 IPR020603 MraZ domain AP3564_16720 0d7f3d13527ddb8c13b5bf4fd28b035c 143 Pfam PF02381 MraZ protein, putative antitoxin-like 72 141 6.6E-28 T 13-10-2018 IPR020603 MraZ domain AP3564_16720 0d7f3d13527ddb8c13b5bf4fd28b035c 143 Gene3D G3DSA:2.40.330.20 1 142 1.1E-55 T 13-10-2018 IPR038619 MraZ superfamily AP3564_16720 0d7f3d13527ddb8c13b5bf4fd28b035c 143 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 143 61.134 T 13-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 AP3564_14295 793e75345af23ceb40d6b85fec4abe60 419 SUPERFAMILY SSF56672 17 356 5.12E-62 T 13-10-2018 AP3564_14295 793e75345af23ceb40d6b85fec4abe60 419 Pfam PF08388 Group II intron, maturase-specific domain 288 359 9.7E-21 T 13-10-2018 IPR013597 Group II intron, maturase-specific AP3564_14295 793e75345af23ceb40d6b85fec4abe60 419 TIGRFAM TIGR04416 group_II_RT_mat: group II intron reverse transcriptase/maturase 10 353 2.3E-133 T 13-10-2018 IPR030931 Group II intron reverse transcriptase/maturase AP3564_14295 793e75345af23ceb40d6b85fec4abe60 419 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 129 147 7.4E-7 T 13-10-2018 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 AP3564_14295 793e75345af23ceb40d6b85fec4abe60 419 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 61 74 7.4E-7 T 13-10-2018 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 AP3564_14295 793e75345af23ceb40d6b85fec4abe60 419 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 187 200 7.4E-7 T 13-10-2018 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 AP3564_14295 793e75345af23ceb40d6b85fec4abe60 419 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 66 272 3.5E-47 T 13-10-2018 IPR000477 Reverse transcriptase domain AP3564_16345 2116596db33852dfdc4b1ddb2eac9fe3 327 SMART SM00963 22 103 3.3E-27 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AP3564_16345 2116596db33852dfdc4b1ddb2eac9fe3 327 Pfam PF00448 SRP54-type protein, GTPase domain 121 320 2.4E-81 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AP3564_16345 2116596db33852dfdc4b1ddb2eac9fe3 327 Pfam PF02881 SRP54-type protein, helical bundle domain 33 99 5.2E-16 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AP3564_16345 2116596db33852dfdc4b1ddb2eac9fe3 327 Gene3D G3DSA:3.40.50.300 114 309 2.8E-117 T 13-10-2018 AP3564_16345 2116596db33852dfdc4b1ddb2eac9fe3 327 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 294 307 - T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AP3564_16345 2116596db33852dfdc4b1ddb2eac9fe3 327 SMART SM00382 119 297 9.8E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_16345 2116596db33852dfdc4b1ddb2eac9fe3 327 Gene3D G3DSA:1.20.120.140 20 318 2.8E-117 T 13-10-2018 AP3564_16345 2116596db33852dfdc4b1ddb2eac9fe3 327 SUPERFAMILY SSF52540 119 319 2.4E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_16345 2116596db33852dfdc4b1ddb2eac9fe3 327 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 46 321 65.39 T 13-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 AP3564_16345 2116596db33852dfdc4b1ddb2eac9fe3 327 SMART SM00962 120 321 1.5E-124 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AP3564_16345 2116596db33852dfdc4b1ddb2eac9fe3 327 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 46 320 2.8E-118 T 13-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 AP3564_16345 2116596db33852dfdc4b1ddb2eac9fe3 327 SUPERFAMILY SSF47364 18 96 7.46E-22 T 13-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 AP3564_19010 0e39f66e70f06cf83330f3225a7d361e 157 ProDom PD104119 YSXD OB2071 ORFY 4 157 4.0E-9 T 13-10-2018 AP3564_05585 206c15012db1f58e63df7d5ee5d89df7 811 Pfam PF07724 AAA domain (Cdc48 subfamily) 537 709 1.1E-59 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AP3564_05585 206c15012db1f58e63df7d5ee5d89df7 811 SUPERFAMILY SSF52540 487 802 9.9E-84 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_05585 206c15012db1f58e63df7d5ee5d89df7 811 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 715 794 5.0E-27 T 13-10-2018 IPR019489 Clp ATPase, C-terminal AP3564_05585 206c15012db1f58e63df7d5ee5d89df7 811 Pfam PF02151 UvrB/uvrC motif 418 452 8.8E-7 T 13-10-2018 IPR001943 UVR domain GO:0005515 AP3564_05585 206c15012db1f58e63df7d5ee5d89df7 811 SUPERFAMILY SSF52540 162 469 2.35E-79 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_05585 206c15012db1f58e63df7d5ee5d89df7 811 Gene3D G3DSA:4.10.860.10 410 468 2.2E-54 T 13-10-2018 AP3564_05585 206c15012db1f58e63df7d5ee5d89df7 811 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 69 1.5E-17 T 13-10-2018 IPR004176 Clp, N-terminal AP3564_05585 206c15012db1f58e63df7d5ee5d89df7 811 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 93 143 2.0E-18 T 13-10-2018 IPR004176 Clp, N-terminal AP3564_05585 206c15012db1f58e63df7d5ee5d89df7 811 Gene3D G3DSA:3.40.50.300 151 344 3.2E-73 T 13-10-2018 AP3564_05585 206c15012db1f58e63df7d5ee5d89df7 811 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 572 590 - T 13-10-2018 IPR028299 ClpA/B, conserved site 2 AP3564_05585 206c15012db1f58e63df7d5ee5d89df7 811 SUPERFAMILY SSF81923 5 151 1.28E-34 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 AP3564_05585 206c15012db1f58e63df7d5ee5d89df7 811 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 587 605 6.1E-43 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 AP3564_05585 206c15012db1f58e63df7d5ee5d89df7 811 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 649 663 6.1E-43 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 AP3564_05585 206c15012db1f58e63df7d5ee5d89df7 811 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 616 634 6.1E-43 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 AP3564_05585 206c15012db1f58e63df7d5ee5d89df7 811 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 542 560 6.1E-43 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 AP3564_05585 206c15012db1f58e63df7d5ee5d89df7 811 Gene3D G3DSA:1.10.8.60 715 811 8.7E-30 T 13-10-2018 AP3564_05585 206c15012db1f58e63df7d5ee5d89df7 811 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 296 308 - T 13-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 AP3564_05585 206c15012db1f58e63df7d5ee5d89df7 811 Gene3D G3DSA:3.40.50.300 490 713 5.2E-93 T 13-10-2018 AP3564_05585 206c15012db1f58e63df7d5ee5d89df7 811 Gene3D G3DSA:1.10.1780.10 1 150 1.0E-63 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 AP3564_05585 206c15012db1f58e63df7d5ee5d89df7 811 SMART SM00382 538 682 8.3E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_05585 206c15012db1f58e63df7d5ee5d89df7 811 SMART SM00382 201 346 2.0E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_05585 206c15012db1f58e63df7d5ee5d89df7 811 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 206 321 1.1E-13 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AP3564_05585 206c15012db1f58e63df7d5ee5d89df7 811 SMART SM01086 715 804 2.3E-37 T 13-10-2018 IPR019489 Clp ATPase, C-terminal AP3564_05585 206c15012db1f58e63df7d5ee5d89df7 811 Gene3D G3DSA:1.10.8.60 347 482 2.2E-54 T 13-10-2018 AP3564_16195 95aada734e1bc904a81270150c85d804 438 SMART SM00382 155 336 4.1E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_16195 95aada734e1bc904a81270150c85d804 438 SUPERFAMILY SSF52540 90 358 6.87E-97 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_16195 95aada734e1bc904a81270150c85d804 438 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 143 352 1.9E-78 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AP3564_16195 95aada734e1bc904a81270150c85d804 438 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 343 352 - T 13-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AP3564_16195 95aada734e1bc904a81270150c85d804 438 Gene3D G3DSA:3.40.50.12240 11 434 3.3E-157 T 13-10-2018 AP3564_16195 95aada734e1bc904a81270150c85d804 438 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 23 86 1.2E-7 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AP3564_16195 95aada734e1bc904a81270150c85d804 438 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 9 432 5.1E-195 T 13-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AP3564_16195 95aada734e1bc904a81270150c85d804 438 TIGRFAM TIGR03497 FliI_clade2: flagellar protein export ATPase FliI 20 431 6.0E-204 T 13-10-2018 IPR022425 Flagellar export ATPase FliI, clade 2 GO:0016887|GO:0044780|GO:0071973 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AP3564_14305 26964ca1cc417eafb4b37d1d8b8b0bd3 270 Gene3D G3DSA:3.40.190.10 122 229 3.9E-79 T 13-10-2018 AP3564_14305 26964ca1cc417eafb4b37d1d8b8b0bd3 270 Gene3D G3DSA:3.40.190.10 45 266 3.9E-79 T 13-10-2018 AP3564_14305 26964ca1cc417eafb4b37d1d8b8b0bd3 270 PIRSF PIRSF004846 1 270 4.4E-88 T 13-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 AP3564_14305 26964ca1cc417eafb4b37d1d8b8b0bd3 270 Pfam PF13531 Bacterial extracellular solute-binding protein 43 266 3.7E-51 T 13-10-2018 AP3564_14305 26964ca1cc417eafb4b37d1d8b8b0bd3 270 SUPERFAMILY SSF53850 42 267 4.35E-64 T 13-10-2018 AP3564_14305 26964ca1cc417eafb4b37d1d8b8b0bd3 270 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 48 265 8.2E-66 T 13-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 AP3564_14760 b16d183ffe2f9844d16bd6f41d6fcd27 169 Gene3D G3DSA:3.40.30.10 18 169 1.1E-47 T 13-10-2018 AP3564_14760 b16d183ffe2f9844d16bd6f41d6fcd27 169 Pfam PF00578 AhpC/TSA family 33 151 1.8E-31 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AP3564_14760 b16d183ffe2f9844d16bd6f41d6fcd27 169 SUPERFAMILY SSF52833 5 166 1.92E-43 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AP3564_14760 b16d183ffe2f9844d16bd6f41d6fcd27 169 ProSitePatterns PS00194 Thioredoxin family active site. 61 79 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 SUPERFAMILY SSF56719 401 632 3.4E-93 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 SUPERFAMILY SSF54211 228 398 9.1E-64 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 Pfam PF01751 Toprim domain 426 537 1.1E-18 T 13-10-2018 IPR006171 TOPRIM domain AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 37 179 5.4E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 11 641 0.0 T 13-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 SMART SM00387 36 180 3.0E-26 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 ProSitePatterns PS00177 DNA topoisomerase II signature. 429 437 - T 13-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 Pfam PF00204 DNA gyrase B 228 397 1.0E-64 T 13-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 SMART SM00433 40 634 0.0 T 13-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 Gene3D G3DSA:3.40.50.670 406 641 1.8E-111 T 13-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 Gene3D G3DSA:3.30.565.10 8 226 3.9E-96 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 570 630 2.9E-31 T 13-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 PRINTS PR00418 DNA topoisomerase II family signature 511 528 1.5E-73 T 13-10-2018 AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 PRINTS PR00418 DNA topoisomerase II family signature 275 288 1.5E-73 T 13-10-2018 AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 PRINTS PR00418 DNA topoisomerase II family signature 531 543 1.5E-73 T 13-10-2018 AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 PRINTS PR00418 DNA topoisomerase II family signature 118 132 1.5E-73 T 13-10-2018 AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 PRINTS PR00418 DNA topoisomerase II family signature 40 55 1.5E-73 T 13-10-2018 AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 PRINTS PR00418 DNA topoisomerase II family signature 75 88 1.5E-73 T 13-10-2018 AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 PRINTS PR00418 DNA topoisomerase II family signature 573 589 1.5E-73 T 13-10-2018 AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 PRINTS PR00418 DNA topoisomerase II family signature 493 509 1.5E-73 T 13-10-2018 AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 PRINTS PR00418 DNA topoisomerase II family signature 427 441 1.5E-73 T 13-10-2018 AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 SUPERFAMILY SSF55874 11 219 2.36E-75 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 8 641 99.679 T 13-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 PRINTS PR01159 DNA gyrase subunit B signature 11 21 1.4E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 PRINTS PR01159 DNA gyrase subunit B signature 381 401 1.4E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 PRINTS PR01159 DNA gyrase subunit B signature 477 486 1.4E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 PRINTS PR01159 DNA gyrase subunit B signature 319 335 1.4E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 PRINTS PR01159 DNA gyrase subunit B signature 594 606 1.4E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 PRINTS PR01159 DNA gyrase subunit B signature 201 214 1.4E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 PRINTS PR01159 DNA gyrase subunit B signature 227 249 1.4E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 PRINTS PR01159 DNA gyrase subunit B signature 186 201 1.4E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 PRINTS PR01159 DNA gyrase subunit B signature 367 381 1.4E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 PRINTS PR01159 DNA gyrase subunit B signature 610 626 1.4E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AP3564_04885 f57d9f85ab1edc924ee3e3b73fb5737c 641 Gene3D G3DSA:3.30.230.10 227 405 1.3E-75 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AP3564_02570 474c8be1c4a77de539634cbd0d02cc31 209 Gene3D G3DSA:1.25.40.340 2 202 2.0E-65 T 13-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AP3564_02570 474c8be1c4a77de539634cbd0d02cc31 209 TIGRFAM TIGR02365 dha_L_ycgS: dihydroxyacetone kinase, L subunit 8 199 1.8E-76 T 13-10-2018 IPR012737 Dihydroxyacetone kinase, subunit L GO:0016772 KEGG: 00561+2.7.1.121 AP3564_02570 474c8be1c4a77de539634cbd0d02cc31 209 Pfam PF02734 DAK2 domain 32 199 8.1E-53 T 13-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AP3564_02570 474c8be1c4a77de539634cbd0d02cc31 209 SMART SM01120 32 200 1.1E-67 T 13-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AP3564_02570 474c8be1c4a77de539634cbd0d02cc31 209 SUPERFAMILY SSF101473 1 200 4.97E-57 T 13-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AP3564_10855 a199b5ac0b2f7ab102a648c8f70ab0c9 493 Pfam PF12161 HsdM N-terminal domain 43 109 4.3E-6 T 13-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain AP3564_10855 a199b5ac0b2f7ab102a648c8f70ab0c9 493 Pfam PF12161 HsdM N-terminal domain 7 43 8.7E-7 T 13-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain AP3564_10855 a199b5ac0b2f7ab102a648c8f70ab0c9 493 SUPERFAMILY SSF53335 5 466 6.75E-131 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_10855 a199b5ac0b2f7ab102a648c8f70ab0c9 493 Pfam PF02384 N-6 DNA Methylase 119 425 9.9E-77 T 13-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 AP3564_10855 a199b5ac0b2f7ab102a648c8f70ab0c9 493 Gene3D G3DSA:1.20.1260.30 1 144 9.0E-50 T 13-10-2018 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily AP3564_10855 a199b5ac0b2f7ab102a648c8f70ab0c9 493 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 252 258 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AP3564_10855 a199b5ac0b2f7ab102a648c8f70ab0c9 493 Gene3D G3DSA:3.40.50.150 145 430 3.8E-73 T 13-10-2018 AP3564_10855 a199b5ac0b2f7ab102a648c8f70ab0c9 493 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 142 158 2.3E-14 T 13-10-2018 AP3564_10855 a199b5ac0b2f7ab102a648c8f70ab0c9 493 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 249 261 2.3E-14 T 13-10-2018 AP3564_10855 a199b5ac0b2f7ab102a648c8f70ab0c9 493 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 166 180 2.3E-14 T 13-10-2018 AP3564_10855 a199b5ac0b2f7ab102a648c8f70ab0c9 493 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 278 302 2.3E-14 T 13-10-2018 AP3564_12250 84d35eae23ef90ac6dbec1a7e104ffcb 313 SUPERFAMILY SSF51735 2 164 4.51E-42 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_12250 84d35eae23ef90ac6dbec1a7e104ffcb 313 Gene3D G3DSA:3.30.360.10 134 313 6.1E-50 T 13-10-2018 AP3564_12250 84d35eae23ef90ac6dbec1a7e104ffcb 313 SUPERFAMILY SSF55347 126 291 9.97E-23 T 13-10-2018 AP3564_12250 84d35eae23ef90ac6dbec1a7e104ffcb 313 Gene3D G3DSA:3.40.50.720 1 133 1.1E-35 T 13-10-2018 AP3564_12250 84d35eae23ef90ac6dbec1a7e104ffcb 313 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 1 117 1.2E-26 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 569 630 2.5E-30 T 13-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 PRINTS PR00418 DNA topoisomerase II family signature 509 526 6.8E-69 T 13-10-2018 AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 PRINTS PR00418 DNA topoisomerase II family signature 573 589 6.8E-69 T 13-10-2018 AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 PRINTS PR00418 DNA topoisomerase II family signature 115 129 6.8E-69 T 13-10-2018 AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 PRINTS PR00418 DNA topoisomerase II family signature 491 507 6.8E-69 T 13-10-2018 AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 PRINTS PR00418 DNA topoisomerase II family signature 425 439 6.8E-69 T 13-10-2018 AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 PRINTS PR00418 DNA topoisomerase II family signature 269 282 6.8E-69 T 13-10-2018 AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 PRINTS PR00418 DNA topoisomerase II family signature 529 541 6.8E-69 T 13-10-2018 AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 PRINTS PR00418 DNA topoisomerase II family signature 73 86 6.8E-69 T 13-10-2018 AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 PRINTS PR00418 DNA topoisomerase II family signature 38 53 6.8E-69 T 13-10-2018 AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 Gene3D G3DSA:3.30.230.10 222 403 4.3E-71 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 SUPERFAMILY SSF55874 8 220 4.32E-69 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 TIGRFAM TIGR01058 parE_Gpos: DNA topoisomerase IV, B subunit 8 642 0.0 T 13-10-2018 IPR005740 DNA topoisomerase 4 subunit B, Firmicutes/Mollicutes GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 PRINTS PR01159 DNA gyrase subunit B signature 363 377 3.9E-59 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 PRINTS PR01159 DNA gyrase subunit B signature 9 19 3.9E-59 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 PRINTS PR01159 DNA gyrase subunit B signature 475 484 3.9E-59 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 PRINTS PR01159 DNA gyrase subunit B signature 594 606 3.9E-59 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 PRINTS PR01159 DNA gyrase subunit B signature 610 626 3.9E-59 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 PRINTS PR01159 DNA gyrase subunit B signature 198 211 3.9E-59 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 PRINTS PR01159 DNA gyrase subunit B signature 183 198 3.9E-59 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 PRINTS PR01159 DNA gyrase subunit B signature 377 397 3.9E-59 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 PRINTS PR01159 DNA gyrase subunit B signature 222 244 3.9E-59 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 PRINTS PR01159 DNA gyrase subunit B signature 313 329 3.9E-59 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 SUPERFAMILY SSF56719 399 633 2.88E-87 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 ProSitePatterns PS00177 DNA topoisomerase II signature. 427 435 - T 13-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 SUPERFAMILY SSF54211 223 393 4.74E-53 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 SMART SM00387 34 178 1.7E-26 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 Pfam PF00204 DNA gyrase B 223 393 1.2E-57 T 13-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 Hamap MF_00939 DNA topoisomerase 4 subunit B [parE]. 7 639 48.694 T 13-10-2018 IPR005740 DNA topoisomerase 4 subunit B, Firmicutes/Mollicutes GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 Pfam PF01751 Toprim domain 424 533 5.3E-19 T 13-10-2018 IPR006171 TOPRIM domain AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 Gene3D G3DSA:3.40.50.670 411 643 2.8E-103 T 13-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 34 176 9.7E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 Gene3D G3DSA:3.30.565.10 6 221 4.8E-87 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_14700 6cccf75780f549c6b375c59847de6db9 646 SMART SM00433 38 634 0.0 T 13-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AP3564_05040 78666625ae5ea2ad82fb570278f90815 67 Pfam PF10764 Inhibitor of sigma-G Gin 14 58 9.7E-21 T 13-10-2018 IPR019700 Anti-sigma-G factor Gin AP3564_19335 19e5e25af9f06cda7722aadb84d8dbb1 876 Gene3D G3DSA:1.10.150.20 657 800 2.1E-111 T 13-10-2018 AP3564_19335 19e5e25af9f06cda7722aadb84d8dbb1 876 Gene3D G3DSA:1.20.1060.10 491 605 2.8E-45 T 13-10-2018 AP3564_19335 19e5e25af9f06cda7722aadb84d8dbb1 876 SMART SM00279 173 208 4.3E-17 T 13-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 AP3564_19335 19e5e25af9f06cda7722aadb84d8dbb1 876 SUPERFAMILY SSF53098 300 468 1.82E-45 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_19335 19e5e25af9f06cda7722aadb84d8dbb1 876 PRINTS PR00868 DNA-polymerase family A (pol I) signature 602 624 2.1E-81 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AP3564_19335 19e5e25af9f06cda7722aadb84d8dbb1 876 PRINTS PR00868 DNA-polymerase family A (pol I) signature 823 836 2.1E-81 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AP3564_19335 19e5e25af9f06cda7722aadb84d8dbb1 876 PRINTS PR00868 DNA-polymerase family A (pol I) signature 625 640 2.1E-81 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AP3564_19335 19e5e25af9f06cda7722aadb84d8dbb1 876 PRINTS PR00868 DNA-polymerase family A (pol I) signature 702 727 2.1E-81 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AP3564_19335 19e5e25af9f06cda7722aadb84d8dbb1 876 PRINTS PR00868 DNA-polymerase family A (pol I) signature 678 691 2.1E-81 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AP3564_19335 19e5e25af9f06cda7722aadb84d8dbb1 876 PRINTS PR00868 DNA-polymerase family A (pol I) signature 793 809 2.1E-81 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AP3564_19335 19e5e25af9f06cda7722aadb84d8dbb1 876 PRINTS PR00868 DNA-polymerase family A (pol I) signature 648 671 2.1E-81 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AP3564_19335 19e5e25af9f06cda7722aadb84d8dbb1 876 PRINTS PR00868 DNA-polymerase family A (pol I) signature 739 750 2.1E-81 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AP3564_19335 19e5e25af9f06cda7722aadb84d8dbb1 876 PRINTS PR00868 DNA-polymerase family A (pol I) signature 761 772 2.1E-81 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AP3564_19335 19e5e25af9f06cda7722aadb84d8dbb1 876 SMART SM00475 3 262 7.5E-148 T 13-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 AP3564_19335 19e5e25af9f06cda7722aadb84d8dbb1 876 Pfam PF00476 DNA polymerase family A 499 874 1.2E-164 T 13-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AP3564_19335 19e5e25af9f06cda7722aadb84d8dbb1 876 SUPERFAMILY SSF47807 171 285 3.89E-34 T 13-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily AP3564_19335 19e5e25af9f06cda7722aadb84d8dbb1 876 Gene3D G3DSA:1.10.150.20 174 247 3.6E-102 T 13-10-2018 AP3564_19335 19e5e25af9f06cda7722aadb84d8dbb1 876 SUPERFAMILY SSF88723 3 170 6.21E-54 T 13-10-2018 IPR029060 PIN-like domain superfamily AP3564_19335 19e5e25af9f06cda7722aadb84d8dbb1 876 TIGRFAM TIGR00593 pola: DNA polymerase I 5 876 0.0 T 13-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AP3564_19335 19e5e25af9f06cda7722aadb84d8dbb1 876 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 172 266 1.1E-35 T 13-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 AP3564_19335 19e5e25af9f06cda7722aadb84d8dbb1 876 SMART SM00474 296 466 4.5E-14 T 13-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AP3564_19335 19e5e25af9f06cda7722aadb84d8dbb1 876 Gene3D G3DSA:3.40.50.1010 5 278 3.6E-102 T 13-10-2018 AP3564_19335 19e5e25af9f06cda7722aadb84d8dbb1 876 SUPERFAMILY SSF56672 470 876 5.23E-160 T 13-10-2018 AP3564_19335 19e5e25af9f06cda7722aadb84d8dbb1 876 Gene3D G3DSA:3.30.420.10 298 489 4.8E-63 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AP3564_19335 19e5e25af9f06cda7722aadb84d8dbb1 876 SMART SM00482 633 840 4.0E-121 T 13-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AP3564_19335 19e5e25af9f06cda7722aadb84d8dbb1 876 ProSitePatterns PS00447 DNA polymerase family A signature. 702 721 - T 13-10-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AP3564_19335 19e5e25af9f06cda7722aadb84d8dbb1 876 Gene3D G3DSA:3.30.70.370 611 872 2.1E-111 T 13-10-2018 AP3564_19335 19e5e25af9f06cda7722aadb84d8dbb1 876 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 4 170 1.1E-54 T 13-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 AP3564_09285 a62c031feda980fc9cdce33fb69d24f2 266 Pfam PF00561 alpha/beta hydrolase fold 21 122 8.2E-22 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AP3564_09285 a62c031feda980fc9cdce33fb69d24f2 266 Pfam PF00561 alpha/beta hydrolase fold 181 252 1.7E-6 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AP3564_09285 a62c031feda980fc9cdce33fb69d24f2 266 PRINTS PR00111 Alpha/beta hydrolase fold signature 104 117 4.1E-15 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AP3564_09285 a62c031feda980fc9cdce33fb69d24f2 266 PRINTS PR00111 Alpha/beta hydrolase fold signature 210 224 4.1E-15 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AP3564_09285 a62c031feda980fc9cdce33fb69d24f2 266 PRINTS PR00111 Alpha/beta hydrolase fold signature 90 103 4.1E-15 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AP3564_09285 a62c031feda980fc9cdce33fb69d24f2 266 PRINTS PR00111 Alpha/beta hydrolase fold signature 45 60 4.1E-15 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AP3564_09285 a62c031feda980fc9cdce33fb69d24f2 266 SUPERFAMILY SSF53474 5 264 6.64E-58 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold AP3564_09285 a62c031feda980fc9cdce33fb69d24f2 266 PRINTS PR00412 Epoxide hydrolase signature 26 44 1.6E-8 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AP3564_09285 a62c031feda980fc9cdce33fb69d24f2 266 PRINTS PR00412 Epoxide hydrolase signature 208 224 1.6E-8 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AP3564_09285 a62c031feda980fc9cdce33fb69d24f2 266 PRINTS PR00412 Epoxide hydrolase signature 241 263 1.6E-8 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AP3564_09285 a62c031feda980fc9cdce33fb69d24f2 266 PRINTS PR00412 Epoxide hydrolase signature 90 103 1.6E-8 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AP3564_09285 a62c031feda980fc9cdce33fb69d24f2 266 Gene3D G3DSA:3.40.50.1820 1 265 2.5E-62 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold AP3564_08840 d02991a199055c075f7864edfc76258f 459 SUPERFAMILY SSF48557 2 459 3.3E-151 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 AP3564_08840 d02991a199055c075f7864edfc76258f 459 Pfam PF10415 Fumarase C C-terminus 407 459 4.4E-24 T 13-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AP3564_08840 d02991a199055c075f7864edfc76258f 459 Gene3D G3DSA:1.10.275.10 4 137 4.0E-55 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal AP3564_08840 d02991a199055c075f7864edfc76258f 459 Hamap MF_00743 Fumarate hydratase class II [fumC]. 3 459 88.095 T 13-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AP3564_08840 d02991a199055c075f7864edfc76258f 459 Gene3D G3DSA:1.20.200.10 138 406 2.0E-112 T 13-10-2018 AP3564_08840 d02991a199055c075f7864edfc76258f 459 Pfam PF00206 Lyase 11 341 1.2E-114 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal AP3564_08840 d02991a199055c075f7864edfc76258f 459 PRINTS PR00149 Fumarate lyase superfamily signature 316 332 1.1E-34 T 13-10-2018 IPR000362 Fumarate lyase family AP3564_08840 d02991a199055c075f7864edfc76258f 459 PRINTS PR00149 Fumarate lyase superfamily signature 270 297 1.1E-34 T 13-10-2018 IPR000362 Fumarate lyase family AP3564_08840 d02991a199055c075f7864edfc76258f 459 PRINTS PR00149 Fumarate lyase superfamily signature 179 197 1.1E-34 T 13-10-2018 IPR000362 Fumarate lyase family AP3564_08840 d02991a199055c075f7864edfc76258f 459 PRINTS PR00149 Fumarate lyase superfamily signature 133 151 1.1E-34 T 13-10-2018 IPR000362 Fumarate lyase family AP3564_08840 d02991a199055c075f7864edfc76258f 459 ProSitePatterns PS00163 Fumarate lyases signature. 316 325 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AP3564_08840 d02991a199055c075f7864edfc76258f 459 Gene3D G3DSA:1.10.40.30 407 459 5.5E-26 T 13-10-2018 AP3564_08840 d02991a199055c075f7864edfc76258f 459 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 3 459 4.9E-239 T 13-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AP3564_09090 c0c8d08a9e3f0459ba80047fbb6cf89c 78 Hamap MF_01542 UPF0349 protein . 1 77 29.258 T 13-10-2018 IPR022916 Protein of unknown function UPF0349 AP3564_09090 c0c8d08a9e3f0459ba80047fbb6cf89c 78 ProDom PD058324 UPF0349 LMO2392 BLI03401/BL03152 SA0800 SAR0901 LIN2491 SERP0525 GK2958 BT9727_4649 BC4937 1 77 4.0E-28 T 13-10-2018 AP3564_09090 c0c8d08a9e3f0459ba80047fbb6cf89c 78 Pfam PF07293 Protein of unknown function (DUF1450) 2 75 4.7E-36 T 13-10-2018 IPR009910 Protein of unknown function DUF1450 AP3564_18195 9432b594cbd45305bb016e3c9bfafd4a 202 Gene3D G3DSA:2.40.500.20 91 202 6.5E-55 T 13-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AP3564_18195 9432b594cbd45305bb016e3c9bfafd4a 202 Gene3D G3DSA:1.10.287.990 20 90 7.7E-33 T 13-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AP3564_18195 9432b594cbd45305bb016e3c9bfafd4a 202 PIRSF PIRSF000349 1 202 1.2E-89 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AP3564_18195 9432b594cbd45305bb016e3c9bfafd4a 202 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 164 171 - T 13-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AP3564_18195 9432b594cbd45305bb016e3c9bfafd4a 202 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 97 197 2.9E-45 T 13-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AP3564_18195 9432b594cbd45305bb016e3c9bfafd4a 202 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 90 1.7E-34 T 13-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AP3564_18195 9432b594cbd45305bb016e3c9bfafd4a 202 PRINTS PR01703 Manganese superoxide dismutase signature 126 134 4.2E-28 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AP3564_18195 9432b594cbd45305bb016e3c9bfafd4a 202 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 4.2E-28 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AP3564_18195 9432b594cbd45305bb016e3c9bfafd4a 202 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 4.2E-28 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AP3564_18195 9432b594cbd45305bb016e3c9bfafd4a 202 PRINTS PR01703 Manganese superoxide dismutase signature 73 86 4.2E-28 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AP3564_18195 9432b594cbd45305bb016e3c9bfafd4a 202 PRINTS PR01703 Manganese superoxide dismutase signature 162 174 4.2E-28 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AP3564_18195 9432b594cbd45305bb016e3c9bfafd4a 202 SUPERFAMILY SSF54719 92 201 6.29E-51 T 13-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AP3564_18195 9432b594cbd45305bb016e3c9bfafd4a 202 SUPERFAMILY SSF46609 1 91 5.11E-39 T 13-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AP3564_01200 44500082b29070ecb2cea46e313b5a91 343 TIGRFAM TIGR00287 cas1: CRISPR-associated endonuclease Cas1 7 337 4.6E-95 T 13-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 AP3564_01200 44500082b29070ecb2cea46e313b5a91 343 Gene3D G3DSA:1.20.120.920 86 342 6.0E-75 T 13-10-2018 AP3564_01200 44500082b29070ecb2cea46e313b5a91 343 TIGRFAM TIGR03640 cas1_DVULG: CRISPR-associated endonuclease Cas1, subtype I-C/DVULG 3 342 2.0E-148 T 13-10-2018 IPR019856 CRISPR-associated protein Cas1, DVULG subtype GO:0004520|GO:0043571|GO:0046872 AP3564_01200 44500082b29070ecb2cea46e313b5a91 343 Gene3D G3DSA:3.100.10.20 6 83 4.4E-18 T 13-10-2018 AP3564_01200 44500082b29070ecb2cea46e313b5a91 343 Hamap MF_01470 CRISPR-associated endonuclease Cas1 [cas1]. 2 328 25.877 T 13-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 AP3564_01200 44500082b29070ecb2cea46e313b5a91 343 Pfam PF01867 CRISPR associated protein Cas1 8 297 1.1E-98 T 13-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 AP3564_19015 4cee21e479b848d13b38793395301696 194 Pfam PF01926 50S ribosome-binding GTPase 25 143 6.6E-22 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AP3564_19015 4cee21e479b848d13b38793395301696 194 Gene3D G3DSA:3.40.50.300 1 194 4.6E-57 T 13-10-2018 AP3564_19015 4cee21e479b848d13b38793395301696 194 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 7 189 6.1E-73 T 13-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 AP3564_19015 4cee21e479b848d13b38793395301696 194 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 11 193 28.954 T 13-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 AP3564_19015 4cee21e479b848d13b38793395301696 194 SUPERFAMILY SSF52540 17 191 1.81E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_19015 4cee21e479b848d13b38793395301696 194 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 25 185 5.2E-12 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AP3564_14555 034fb5bd4bde5116bbb13c3885e6edb6 774 SUPERFAMILY SSF52540 516 765 1.7E-26 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_14555 034fb5bd4bde5116bbb13c3885e6edb6 774 Gene3D G3DSA:3.40.50.300 396 574 5.9E-38 T 13-10-2018 AP3564_14555 034fb5bd4bde5116bbb13c3885e6edb6 774 Pfam PF04851 Type III restriction enzyme, res subunit 406 547 1.9E-22 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AP3564_14555 034fb5bd4bde5116bbb13c3885e6edb6 774 Gene3D G3DSA:3.40.50.300 580 773 2.4E-31 T 13-10-2018 AP3564_14555 034fb5bd4bde5116bbb13c3885e6edb6 774 Pfam PF00271 Helicase conserved C-terminal domain 618 722 8.1E-5 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_14555 034fb5bd4bde5116bbb13c3885e6edb6 774 SUPERFAMILY SSF52540 317 565 5.95E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_14555 034fb5bd4bde5116bbb13c3885e6edb6 774 SMART SM00487 402 581 2.1E-19 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AP3564_01795 a36128e6444eb70e8fa2782d3dba22ba 99 SUPERFAMILY SSF140453 15 81 3.79E-5 T 13-10-2018 IPR036689 ESAT-6-like superfamily AP3564_01795 a36128e6444eb70e8fa2782d3dba22ba 99 Pfam PF06013 Proteins of 100 residues with WXG 4 86 2.4E-11 T 13-10-2018 IPR010310 Type VII secretion system ESAT-6-like AP3564_14605 24c33e64ee5f2a8da3119b727cc602cf 152 Pfam PF02391 MoaE protein 6 116 4.8E-39 T 13-10-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 AP3564_14605 24c33e64ee5f2a8da3119b727cc602cf 152 Gene3D G3DSA:3.90.1170.40 1 145 2.3E-55 T 13-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 AP3564_14605 24c33e64ee5f2a8da3119b727cc602cf 152 SUPERFAMILY SSF54690 3 138 4.05E-49 T 13-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 AP3564_05345 671e42b73677a0072c63875290f09b3d 500 Pfam PF00152 tRNA synthetases class II (D, K and N) 161 497 4.8E-85 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_05345 671e42b73677a0072c63875290f09b3d 500 Pfam PF01336 OB-fold nucleic acid binding domain 66 142 1.2E-15 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 AP3564_05345 671e42b73677a0072c63875290f09b3d 500 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 18 500 46.665 T 13-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AP3564_05345 671e42b73677a0072c63875290f09b3d 500 Gene3D G3DSA:2.40.50.140 12 152 7.6E-47 T 13-10-2018 AP3564_05345 671e42b73677a0072c63875290f09b3d 500 PIRSF PIRSF039101 2 500 4.5E-207 T 13-10-2018 IPR034762 Bacterial/eukaryotic lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AP3564_05345 671e42b73677a0072c63875290f09b3d 500 SUPERFAMILY SSF50249 10 152 7.07E-46 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_05345 671e42b73677a0072c63875290f09b3d 500 SUPERFAMILY SSF55681 159 498 1.49E-126 T 13-10-2018 AP3564_05345 671e42b73677a0072c63875290f09b3d 500 PRINTS PR00982 Lysyl-tRNA synthetase signature 212 228 7.5E-40 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AP3564_05345 671e42b73677a0072c63875290f09b3d 500 PRINTS PR00982 Lysyl-tRNA synthetase signature 259 276 7.5E-40 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AP3564_05345 671e42b73677a0072c63875290f09b3d 500 PRINTS PR00982 Lysyl-tRNA synthetase signature 196 206 7.5E-40 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AP3564_05345 671e42b73677a0072c63875290f09b3d 500 PRINTS PR00982 Lysyl-tRNA synthetase signature 241 254 7.5E-40 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AP3564_05345 671e42b73677a0072c63875290f09b3d 500 PRINTS PR00982 Lysyl-tRNA synthetase signature 382 398 7.5E-40 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AP3564_05345 671e42b73677a0072c63875290f09b3d 500 Gene3D G3DSA:3.30.930.10 153 497 3.9E-141 T 13-10-2018 AP3564_05345 671e42b73677a0072c63875290f09b3d 500 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 11 499 5.8E-232 T 13-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AP3564_19380 695f5149fa3ca062a3502b3a98684dfa 586 Gene3D G3DSA:3.50.30.10 475 586 2.1E-36 T 13-10-2018 AP3564_19380 695f5149fa3ca062a3502b3a98684dfa 586 SUPERFAMILY SSF52935 323 474 3.53E-43 T 13-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AP3564_19380 695f5149fa3ca062a3502b3a98684dfa 586 Pfam PF00224 Pyruvate kinase, barrel domain 1 343 8.3E-161 T 13-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AP3564_19380 695f5149fa3ca062a3502b3a98684dfa 586 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 2 473 3.5E-194 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AP3564_19380 695f5149fa3ca062a3502b3a98684dfa 586 Gene3D G3DSA:2.40.33.10 71 167 1.3E-154 T 13-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AP3564_19380 695f5149fa3ca062a3502b3a98684dfa 586 SUPERFAMILY SSF51621 1 343 6.98E-108 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AP3564_19380 695f5149fa3ca062a3502b3a98684dfa 586 Pfam PF02887 Pyruvate kinase, alpha/beta domain 359 471 3.6E-35 T 13-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AP3564_19380 695f5149fa3ca062a3502b3a98684dfa 586 SUPERFAMILY SSF50800 70 167 7.15E-28 T 13-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily AP3564_19380 695f5149fa3ca062a3502b3a98684dfa 586 SUPERFAMILY SSF52009 466 583 1.57E-30 T 13-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 AP3564_19380 695f5149fa3ca062a3502b3a98684dfa 586 ProSitePatterns PS00110 Pyruvate kinase active site signature. 215 227 - T 13-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AP3564_19380 695f5149fa3ca062a3502b3a98684dfa 586 Pfam PF00391 PEP-utilising enzyme, mobile domain 506 576 2.3E-21 T 13-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AP3564_19380 695f5149fa3ca062a3502b3a98684dfa 586 Gene3D G3DSA:3.20.20.60 4 332 1.3E-154 T 13-10-2018 AP3564_19380 695f5149fa3ca062a3502b3a98684dfa 586 Gene3D G3DSA:3.40.1380.20 340 474 2.9E-43 T 13-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AP3564_19380 695f5149fa3ca062a3502b3a98684dfa 586 PRINTS PR01050 Pyruvate kinase family signature 244 268 1.6E-80 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AP3564_19380 695f5149fa3ca062a3502b3a98684dfa 586 PRINTS PR01050 Pyruvate kinase family signature 217 243 1.6E-80 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AP3564_19380 695f5149fa3ca062a3502b3a98684dfa 586 PRINTS PR01050 Pyruvate kinase family signature 269 293 1.6E-80 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AP3564_19380 695f5149fa3ca062a3502b3a98684dfa 586 PRINTS PR01050 Pyruvate kinase family signature 313 329 1.6E-80 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AP3564_19380 695f5149fa3ca062a3502b3a98684dfa 586 PRINTS PR01050 Pyruvate kinase family signature 186 200 1.6E-80 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AP3564_19380 695f5149fa3ca062a3502b3a98684dfa 586 PRINTS PR01050 Pyruvate kinase family signature 59 75 1.6E-80 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AP3564_19380 695f5149fa3ca062a3502b3a98684dfa 586 PRINTS PR01050 Pyruvate kinase family signature 294 312 1.6E-80 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AP3564_06045 1f55c07f50a71ccd1e604c681e1f649d 187 TIGRFAM TIGR02948 SigW_bacill: RNA polymerase sigma-W factor 1 187 2.7E-103 T 13-10-2018 IPR014294 RNA polymerase sigma-W, bacillaceae AP3564_06045 1f55c07f50a71ccd1e604c681e1f649d 187 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 45 76 - T 13-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AP3564_06045 1f55c07f50a71ccd1e604c681e1f649d 187 SUPERFAMILY SSF88946 9 99 1.37E-29 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AP3564_06045 1f55c07f50a71ccd1e604c681e1f649d 187 Gene3D G3DSA:1.10.1740.10 6 109 1.2E-32 T 13-10-2018 AP3564_06045 1f55c07f50a71ccd1e604c681e1f649d 187 Pfam PF04542 Sigma-70 region 2 24 89 1.6E-21 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AP3564_06045 1f55c07f50a71ccd1e604c681e1f649d 187 Gene3D G3DSA:1.10.10.10 110 186 3.2E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_06045 1f55c07f50a71ccd1e604c681e1f649d 187 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 19 184 6.2E-36 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AP3564_06045 1f55c07f50a71ccd1e604c681e1f649d 187 Pfam PF08281 Sigma-70, region 4 129 180 1.7E-17 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AP3564_06045 1f55c07f50a71ccd1e604c681e1f649d 187 SUPERFAMILY SSF88659 117 184 8.04E-19 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AP3564_04015 35b7df9da36489e1c2b3867a2fb985c0 66 PRINTS PR01249 Ribosomal protein L31 signature 45 63 3.1E-22 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_04015 35b7df9da36489e1c2b3867a2fb985c0 66 PRINTS PR01249 Ribosomal protein L31 signature 2 19 3.1E-22 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_04015 35b7df9da36489e1c2b3867a2fb985c0 66 PRINTS PR01249 Ribosomal protein L31 signature 30 45 3.1E-22 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_04015 35b7df9da36489e1c2b3867a2fb985c0 66 ProSitePatterns PS01143 Ribosomal protein L31 signature. 34 55 - T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_04015 35b7df9da36489e1c2b3867a2fb985c0 66 Gene3D G3DSA:2.30.170.50 1 66 5.8E-32 T 13-10-2018 AP3564_04015 35b7df9da36489e1c2b3867a2fb985c0 66 SUPERFAMILY SSF143800 1 65 8.63E-26 T 13-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_04015 35b7df9da36489e1c2b3867a2fb985c0 66 Pfam PF01197 Ribosomal protein L31 1 64 6.1E-32 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_04015 35b7df9da36489e1c2b3867a2fb985c0 66 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 65 6.7E-30 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_04015 35b7df9da36489e1c2b3867a2fb985c0 66 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 66 27.758 T 13-10-2018 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05225 462eb2cacbd30df01e9c724a67c5ecf9 101 TIGRFAM TIGR02892 spore_yabP: sporulation protein YabP 18 101 8.2E-34 T 13-10-2018 IPR012504 Sporulation protein YabP AP3564_05225 462eb2cacbd30df01e9c724a67c5ecf9 101 PIRSF PIRSF011576 1 101 1.4E-45 T 13-10-2018 IPR012504 Sporulation protein YabP AP3564_05225 462eb2cacbd30df01e9c724a67c5ecf9 101 ProDom PD067726 YABP B.SUBTILIS PRECURSOR UNCHARACTERIZED BH0074 SIGNAL CPE2477 PROTEIN 17 101 2.0E-33 T 13-10-2018 IPR012504 Sporulation protein YabP AP3564_05225 462eb2cacbd30df01e9c724a67c5ecf9 101 Pfam PF07873 YabP family 18 83 1.6E-20 T 13-10-2018 IPR022476 Sporulation protein YabP/YqfC AP3564_05225 462eb2cacbd30df01e9c724a67c5ecf9 101 Gene3D G3DSA:2.60.40.2000 26 83 1.1E-23 T 13-10-2018 IPR038705 YabP superfamily AP3564_09960 f5f98fd8f91efa234b031e70fe2cff6e 1822 Pfam PF00932 Lamin Tail Domain 551 659 1.7E-9 T 13-10-2018 IPR001322 Lamin tail domain AP3564_09960 f5f98fd8f91efa234b031e70fe2cff6e 1822 Pfam PF00932 Lamin Tail Domain 260 389 5.3E-12 T 13-10-2018 IPR001322 Lamin tail domain AP3564_09960 f5f98fd8f91efa234b031e70fe2cff6e 1822 Gene3D G3DSA:3.60.21.10 1332 1562 1.0E-17 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like AP3564_09960 f5f98fd8f91efa234b031e70fe2cff6e 1822 Pfam PF00149 Calcineurin-like phosphoesterase 1333 1529 1.9E-12 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AP3564_09960 f5f98fd8f91efa234b031e70fe2cff6e 1822 SUPERFAMILY SSF56300 1331 1587 1.68E-31 T 13-10-2018 AP3564_09960 f5f98fd8f91efa234b031e70fe2cff6e 1822 SUPERFAMILY SSF74853 245 338 1.96E-10 T 13-10-2018 IPR036415 Lamin tail domain superfamily AP3564_18355 72729393d056dc4f355772a737375cda 301 SUPERFAMILY SSF52540 11 206 9.59E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_18355 72729393d056dc4f355772a737375cda 301 SUPERFAMILY SSF54814 182 297 3.79E-44 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 AP3564_18355 72729393d056dc4f355772a737375cda 301 TIGRFAM TIGR00436 era: GTP-binding protein Era 9 279 1.4E-114 T 13-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_18355 72729393d056dc4f355772a737375cda 301 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 102 6.0E-5 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AP3564_18355 72729393d056dc4f355772a737375cda 301 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 11 31 6.0E-5 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AP3564_18355 72729393d056dc4f355772a737375cda 301 Pfam PF07650 KH domain 208 285 2.6E-21 T 13-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_18355 72729393d056dc4f355772a737375cda 301 Hamap MF_00367 GTPase Era [era]. 6 296 39.503 T 13-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_18355 72729393d056dc4f355772a737375cda 301 Gene3D G3DSA:3.40.50.300 3 185 1.2E-51 T 13-10-2018 AP3564_18355 72729393d056dc4f355772a737375cda 301 Gene3D G3DSA:3.30.300.20 186 300 1.6E-44 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta AP3564_18355 72729393d056dc4f355772a737375cda 301 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 169 5.1E-32 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AP3564_18355 72729393d056dc4f355772a737375cda 301 Pfam PF01926 50S ribosome-binding GTPase 11 125 6.5E-26 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AP3564_10710 2355f8f30b62fe2c9897acc537ad0b9e 525 Pfam PF07731 Multicopper oxidase 226 345 1.5E-16 T 13-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 AP3564_10710 2355f8f30b62fe2c9897acc537ad0b9e 525 Pfam PF07731 Multicopper oxidase 401 506 1.0E-30 T 13-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 AP3564_10710 2355f8f30b62fe2c9897acc537ad0b9e 525 SUPERFAMILY SSF49503 186 342 1.05E-31 T 13-10-2018 IPR008972 Cupredoxin AP3564_10710 2355f8f30b62fe2c9897acc537ad0b9e 525 SUPERFAMILY SSF49503 58 204 9.06E-39 T 13-10-2018 IPR008972 Cupredoxin AP3564_10710 2355f8f30b62fe2c9897acc537ad0b9e 525 Gene3D G3DSA:2.60.40.420 378 518 1.8E-41 T 13-10-2018 IPR008972 Cupredoxin AP3564_10710 2355f8f30b62fe2c9897acc537ad0b9e 525 Gene3D G3DSA:2.60.40.420 36 361 7.8E-94 T 13-10-2018 IPR008972 Cupredoxin AP3564_10710 2355f8f30b62fe2c9897acc537ad0b9e 525 ProSitePatterns PS00079 Multicopper oxidases signature 1. 484 504 - T 13-10-2018 IPR033138 Multicopper oxidases, conserved site AP3564_10710 2355f8f30b62fe2c9897acc537ad0b9e 525 Pfam PF07732 Multicopper oxidase 73 183 1.1E-36 T 13-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 AP3564_10710 2355f8f30b62fe2c9897acc537ad0b9e 525 SUPERFAMILY SSF49503 381 512 9.72E-37 T 13-10-2018 IPR008972 Cupredoxin AP3564_10710 2355f8f30b62fe2c9897acc537ad0b9e 525 ProSitePatterns PS00080 Multicopper oxidases signature 2. 489 500 - T 13-10-2018 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 AP3564_05330 cf7201bd6fe35971be4fc905afc97209 175 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 5 133 2.6E-46 T 13-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AP3564_05330 cf7201bd6fe35971be4fc905afc97209 175 SUPERFAMILY SSF55083 4 157 1.57E-55 T 13-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AP3564_05330 cf7201bd6fe35971be4fc905afc97209 175 Gene3D G3DSA:3.30.70.560 2 170 5.7E-57 T 13-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AP3564_05330 cf7201bd6fe35971be4fc905afc97209 175 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 89 100 - T 13-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AP3564_05330 cf7201bd6fe35971be4fc905afc97209 175 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 6 133 6.3E-39 T 13-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AP3564_16500 9ddf902765580fdf504061bccdce0182 541 PRINTS PR00397 Sirohaem Fe-binding site signature 392 410 3.0E-9 T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AP3564_16500 9ddf902765580fdf504061bccdce0182 541 PRINTS PR00397 Sirohaem Fe-binding site signature 436 454 3.0E-9 T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AP3564_16500 9ddf902765580fdf504061bccdce0182 541 SUPERFAMILY SSF55124 270 403 8.83E-23 T 13-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AP3564_16500 9ddf902765580fdf504061bccdce0182 541 SUPERFAMILY SSF56014 392 528 3.53E-32 T 13-10-2018 AP3564_16500 9ddf902765580fdf504061bccdce0182 541 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 436 452 - T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AP3564_16500 9ddf902765580fdf504061bccdce0182 541 Gene3D G3DSA:3.30.413.10 127 307 3.5E-140 T 13-10-2018 AP3564_16500 9ddf902765580fdf504061bccdce0182 541 SUPERFAMILY SSF56014 135 295 1.44E-44 T 13-10-2018 AP3564_16500 9ddf902765580fdf504061bccdce0182 541 SUPERFAMILY SSF55124 13 134 5.56E-32 T 13-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AP3564_16500 9ddf902765580fdf504061bccdce0182 541 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 395 534 5.9E-12 T 13-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AP3564_16500 9ddf902765580fdf504061bccdce0182 541 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 312 375 1.2E-16 T 13-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AP3564_16500 9ddf902765580fdf504061bccdce0182 541 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 61 126 1.5E-18 T 13-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AP3564_16500 9ddf902765580fdf504061bccdce0182 541 Gene3D G3DSA:3.90.480.20 13 378 3.5E-140 T 13-10-2018 AP3564_16500 9ddf902765580fdf504061bccdce0182 541 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 136 287 1.9E-36 T 13-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AP3564_16500 9ddf902765580fdf504061bccdce0182 541 Gene3D G3DSA:3.30.413.10 392 529 5.5E-34 T 13-10-2018 AP3564_08175 9fdd0f6035a7138095d8f76b80558f34 211 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 205 4.1E-18 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_08175 9fdd0f6035a7138095d8f76b80558f34 211 Pfam PF00072 Response regulator receiver domain 5 116 4.9E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_08175 9fdd0f6035a7138095d8f76b80558f34 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 3.1E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_08175 9fdd0f6035a7138095d8f76b80558f34 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 3.1E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_08175 9fdd0f6035a7138095d8f76b80558f34 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 3.1E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_08175 9fdd0f6035a7138095d8f76b80558f34 211 SMART SM00421 148 205 1.8E-25 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_08175 9fdd0f6035a7138095d8f76b80558f34 211 SMART SM00448 3 116 1.2E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_08175 9fdd0f6035a7138095d8f76b80558f34 211 SUPERFAMILY SSF46894 146 210 6.46E-22 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AP3564_08175 9fdd0f6035a7138095d8f76b80558f34 211 SUPERFAMILY SSF52172 2 131 1.32E-34 T 13-10-2018 IPR011006 CheY-like superfamily AP3564_08175 9fdd0f6035a7138095d8f76b80558f34 211 Gene3D G3DSA:3.40.50.12740 3 211 8.4E-69 T 13-10-2018 AP3564_17125 4db68635efb507829d7aae77a5d6c5fd 431 Gene3D G3DSA:3.65.10.10 13 424 8.7E-157 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 AP3564_17125 4db68635efb507829d7aae77a5d6c5fd 431 Gene3D G3DSA:3.65.10.10 23 231 8.7E-157 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 AP3564_17125 4db68635efb507829d7aae77a5d6c5fd 431 SUPERFAMILY SSF55205 6 427 1.18E-133 T 13-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 AP3564_17125 4db68635efb507829d7aae77a5d6c5fd 431 ProSitePatterns PS00885 EPSP synthase signature 2. 340 358 - T 13-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 AP3564_17125 4db68635efb507829d7aae77a5d6c5fd 431 ProSitePatterns PS00104 EPSP synthase signature 1. 89 103 - T 13-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 AP3564_17125 4db68635efb507829d7aae77a5d6c5fd 431 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 11 430 34.152 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 AP3564_17125 4db68635efb507829d7aae77a5d6c5fd 431 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 15 427 1.9E-131 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 AP3564_17125 4db68635efb507829d7aae77a5d6c5fd 431 PIRSF PIRSF000505 4 431 6.9E-119 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 AP3564_17125 4db68635efb507829d7aae77a5d6c5fd 431 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 8 424 5.5E-125 T 13-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 AP3564_02930 b26f384e2ee5d857aadc5ab34571022b 754 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 152 741 1.7E-181 T 13-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AP3564_02930 b26f384e2ee5d857aadc5ab34571022b 754 PRINTS PR01183 Ribonucleotide reductase large chain signature 304 323 2.6E-41 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AP3564_02930 b26f384e2ee5d857aadc5ab34571022b 754 PRINTS PR01183 Ribonucleotide reductase large chain signature 562 585 2.6E-41 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AP3564_02930 b26f384e2ee5d857aadc5ab34571022b 754 PRINTS PR01183 Ribonucleotide reductase large chain signature 445 456 2.6E-41 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AP3564_02930 b26f384e2ee5d857aadc5ab34571022b 754 PRINTS PR01183 Ribonucleotide reductase large chain signature 623 650 2.6E-41 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AP3564_02930 b26f384e2ee5d857aadc5ab34571022b 754 PRINTS PR01183 Ribonucleotide reductase large chain signature 496 519 2.6E-41 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AP3564_02930 b26f384e2ee5d857aadc5ab34571022b 754 PRINTS PR01183 Ribonucleotide reductase large chain signature 534 556 2.6E-41 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AP3564_02930 b26f384e2ee5d857aadc5ab34571022b 754 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 148 224 6.4E-20 T 13-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AP3564_02930 b26f384e2ee5d857aadc5ab34571022b 754 SUPERFAMILY SSF48168 34 227 5.32E-53 T 13-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AP3564_02930 b26f384e2ee5d857aadc5ab34571022b 754 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 612 634 - T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AP3564_02930 b26f384e2ee5d857aadc5ab34571022b 754 SUPERFAMILY SSF51998 228 752 2.5E-173 T 13-10-2018 AP3564_02930 b26f384e2ee5d857aadc5ab34571022b 754 Gene3D G3DSA:3.20.70.20 80 748 3.9E-211 T 13-10-2018 AP3564_02930 b26f384e2ee5d857aadc5ab34571022b 754 Pfam PF02867 Ribonucleotide reductase, barrel domain 229 738 3.8E-153 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AP3564_18330 646e2fc0d2d1af0d6afe7ec018c57ddc 213 PIRSF PIRSF026546 5 211 1.5E-101 T 13-10-2018 IPR016842 Protein of unknown function UCP026546, HtH-CBS AP3564_18330 646e2fc0d2d1af0d6afe7ec018c57ddc 213 Gene3D G3DSA:3.10.580.10 65 213 1.3E-58 T 13-10-2018 AP3564_18330 646e2fc0d2d1af0d6afe7ec018c57ddc 213 Pfam PF08279 HTH domain 10 62 3.5E-13 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 AP3564_18330 646e2fc0d2d1af0d6afe7ec018c57ddc 213 Gene3D G3DSA:1.10.10.10 2 64 9.1E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_18330 646e2fc0d2d1af0d6afe7ec018c57ddc 213 SUPERFAMILY SSF54631 73 206 6.34E-23 T 13-10-2018 AP3564_18330 646e2fc0d2d1af0d6afe7ec018c57ddc 213 SUPERFAMILY SSF46785 6 81 3.26E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_18330 646e2fc0d2d1af0d6afe7ec018c57ddc 213 Pfam PF00571 CBS domain 81 134 1.9E-5 T 13-10-2018 IPR000644 CBS domain AP3564_18330 646e2fc0d2d1af0d6afe7ec018c57ddc 213 Pfam PF00571 CBS domain 148 204 3.8E-6 T 13-10-2018 IPR000644 CBS domain AP3564_18330 646e2fc0d2d1af0d6afe7ec018c57ddc 213 SMART SM00420 10 55 0.0056 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AP3564_18330 646e2fc0d2d1af0d6afe7ec018c57ddc 213 SMART SM00116 154 205 5.5E-4 T 13-10-2018 IPR000644 CBS domain AP3564_18330 646e2fc0d2d1af0d6afe7ec018c57ddc 213 SMART SM00116 87 135 0.016 T 13-10-2018 IPR000644 CBS domain AP3564_01865 6db722b2b6f851423011460f0856045a 92 Gene3D G3DSA:1.10.10.60 8 87 4.6E-9 T 13-10-2018 AP3564_01865 6db722b2b6f851423011460f0856045a 92 SUPERFAMILY SSF46689 3 90 1.13E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_01865 6db722b2b6f851423011460f0856045a 92 Pfam PF01527 Transposase 1 75 3.1E-17 T 13-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AP3564_07120 a9553147d5990415920063055a7655d2 325 TIGRFAM TIGR04382 myo_inos_iolC_N: 5-dehydro-2-deoxygluconokinase 11 321 3.6E-124 T 13-10-2018 IPR030830 5-Dehydro-2-deoxygluconokinase KEGG: 00562+2.7.1.92 AP3564_07120 a9553147d5990415920063055a7655d2 325 Hamap MF_01668 5-dehydro-2-deoxygluconokinase [iolC]. 7 325 54.428 T 13-10-2018 IPR022841 5-dehydro-2-deoxygluconokinase, Firmicutes GO:0016310|GO:0047590 KEGG: 00562+2.7.1.92 AP3564_07120 a9553147d5990415920063055a7655d2 325 SUPERFAMILY SSF53613 10 321 6.7E-76 T 13-10-2018 IPR029056 Ribokinase-like AP3564_07120 a9553147d5990415920063055a7655d2 325 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 265 278 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AP3564_07120 a9553147d5990415920063055a7655d2 325 Gene3D G3DSA:2.20.150.10 19 115 9.5E-106 T 13-10-2018 IPR023314 5-Dehydro-2-deoxygluconokinase-like superfamily KEGG: 00562+2.7.1.92 AP3564_07120 a9553147d5990415920063055a7655d2 325 Gene3D G3DSA:3.40.1190.20 14 300 9.5E-106 T 13-10-2018 IPR029056 Ribokinase-like AP3564_07120 a9553147d5990415920063055a7655d2 325 Pfam PF00294 pfkB family carbohydrate kinase 13 313 3.4E-65 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB AP3564_11285 6e2474f2e2130bc743771f6e956f2bc3 149 Gene3D G3DSA:3.10.129.10 2 139 3.4E-34 T 13-10-2018 AP3564_11285 6e2474f2e2130bc743771f6e956f2bc3 149 SUPERFAMILY SSF54637 5 133 2.24E-32 T 13-10-2018 IPR029069 HotDog domain superfamily AP3564_11285 6e2474f2e2130bc743771f6e956f2bc3 149 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 8 119 3.2E-20 T 13-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 AP3564_11285 6e2474f2e2130bc743771f6e956f2bc3 149 Pfam PF03061 Thioesterase superfamily 19 102 8.5E-15 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AP3564_00440 36e782dc8844649b560b92ddc5293eb6 464 SMART SM00387 352 464 5.8E-42 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_00440 36e782dc8844649b560b92ddc5293eb6 464 SUPERFAMILY SSF55874 296 462 1.09E-49 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_00440 36e782dc8844649b560b92ddc5293eb6 464 Gene3D G3DSA:1.10.8.500 187 234 4.5E-9 T 13-10-2018 AP3564_00440 36e782dc8844649b560b92ddc5293eb6 464 Pfam PF00512 His Kinase A (phospho-acceptor) domain 241 306 2.9E-16 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AP3564_00440 36e782dc8844649b560b92ddc5293eb6 464 SUPERFAMILY SSF47384 223 308 7.85E-21 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AP3564_00440 36e782dc8844649b560b92ddc5293eb6 464 Gene3D G3DSA:3.30.565.10 313 464 4.4E-47 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_00440 36e782dc8844649b560b92ddc5293eb6 464 SMART SM00388 240 307 4.5E-16 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AP3564_00440 36e782dc8844649b560b92ddc5293eb6 464 SMART SM00304 187 239 1.2E-12 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AP3564_00440 36e782dc8844649b560b92ddc5293eb6 464 Pfam PF00672 HAMP domain 188 235 4.5E-10 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AP3564_00440 36e782dc8844649b560b92ddc5293eb6 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 417 4.1E-16 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_00440 36e782dc8844649b560b92ddc5293eb6 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 389 403 4.1E-16 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_00440 36e782dc8844649b560b92ddc5293eb6 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 424 442 4.1E-16 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_00440 36e782dc8844649b560b92ddc5293eb6 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 448 461 4.1E-16 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_00440 36e782dc8844649b560b92ddc5293eb6 464 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 352 461 2.7E-29 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_00440 36e782dc8844649b560b92ddc5293eb6 464 Gene3D G3DSA:1.10.287.130 235 312 1.3E-22 T 13-10-2018 AP3564_00440 36e782dc8844649b560b92ddc5293eb6 464 SUPERFAMILY SSF158472 188 236 4.97E-10 T 13-10-2018 AP3564_07185 c710501a7f993e8f0b2c66f38ddde995 235 SUPERFAMILY SSF48008 90 226 3.66E-25 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AP3564_07185 c710501a7f993e8f0b2c66f38ddde995 235 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 70 8.3E-21 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_07185 c710501a7f993e8f0b2c66f38ddde995 235 SMART SM00895 94 221 1.5E-20 T 13-10-2018 IPR011711 GntR, C-terminal AP3564_07185 c710501a7f993e8f0b2c66f38ddde995 235 Pfam PF07729 FCD domain 95 219 2.6E-26 T 13-10-2018 IPR011711 GntR, C-terminal AP3564_07185 c710501a7f993e8f0b2c66f38ddde995 235 SUPERFAMILY SSF46785 4 74 3.94E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_07185 c710501a7f993e8f0b2c66f38ddde995 235 SMART SM00345 11 70 5.5E-24 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_07185 c710501a7f993e8f0b2c66f38ddde995 235 Gene3D G3DSA:1.10.10.10 1 76 2.8E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_07185 c710501a7f993e8f0b2c66f38ddde995 235 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 30 44 3.6E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_07185 c710501a7f993e8f0b2c66f38ddde995 235 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 60 3.6E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_07185 c710501a7f993e8f0b2c66f38ddde995 235 Gene3D G3DSA:1.20.120.530 89 232 3.9E-30 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AP3564_18505 9a5ef46552a6e987388a95a85cc72962 88 Pfam PF01649 Ribosomal protein S20 2 84 1.0E-29 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_18505 9a5ef46552a6e987388a95a85cc72962 88 Gene3D G3DSA:1.20.58.110 1 87 5.0E-32 T 13-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_18505 9a5ef46552a6e987388a95a85cc72962 88 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 14 88 6.0E-24 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_18505 9a5ef46552a6e987388a95a85cc72962 88 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 86 8.0E-31 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_18505 9a5ef46552a6e987388a95a85cc72962 88 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 18.807 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_18505 9a5ef46552a6e987388a95a85cc72962 88 SUPERFAMILY SSF46992 3 86 1.44E-31 T 13-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_08505 db7eb7f230a5a85dfa8a4b2ec249e3cf 119 Pfam PF04020 Mycobacterial 4 TMS phage holin, superfamily IV 3 107 5.2E-26 T 13-10-2018 IPR007165 Mycobacterial 4 TMS phage holin, superfamily IV AP3564_09100 ec8c3e9065172914598e9c37afa4c6bd 120 Gene3D G3DSA:2.60.300.12 4 112 8.6E-36 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 AP3564_09100 ec8c3e9065172914598e9c37afa4c6bd 120 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 91 108 - T 13-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 AP3564_09100 ec8c3e9065172914598e9c37afa4c6bd 120 Pfam PF01521 Iron-sulphur cluster biosynthesis 6 105 1.4E-20 T 13-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AP3564_09100 ec8c3e9065172914598e9c37afa4c6bd 120 SUPERFAMILY SSF89360 4 98 8.24E-29 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 AP3564_09100 ec8c3e9065172914598e9c37afa4c6bd 120 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 5 109 5.1E-37 T 13-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 AP3564_19450 4d6baef62eee4733f2adc5c4535897e2 401 Gene3D G3DSA:3.40.50.620 1 173 3.5E-68 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AP3564_19450 4d6baef62eee4733f2adc5c4535897e2 401 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 116 127 - T 13-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AP3564_19450 4d6baef62eee4733f2adc5c4535897e2 401 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 9 17 - T 13-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AP3564_19450 4d6baef62eee4733f2adc5c4535897e2 401 Hamap MF_00005 Argininosuccinate synthase [argG]. 3 396 56.415 T 13-10-2018 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AP3564_19450 4d6baef62eee4733f2adc5c4535897e2 401 TIGRFAM TIGR00032 argG: argininosuccinate synthase 5 394 5.1E-179 T 13-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AP3564_19450 4d6baef62eee4733f2adc5c4535897e2 401 Gene3D G3DSA:3.90.1260.10 174 401 9.7E-96 T 13-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AP3564_19450 4d6baef62eee4733f2adc5c4535897e2 401 Pfam PF00764 Arginosuccinate synthase 7 390 5.1E-185 T 13-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AP3564_19450 4d6baef62eee4733f2adc5c4535897e2 401 SUPERFAMILY SSF52402 1 170 3.53E-49 T 13-10-2018 AP3564_19450 4d6baef62eee4733f2adc5c4535897e2 401 SUPERFAMILY SSF69864 170 397 1.96E-96 T 13-10-2018 AP3564_00530 c2cfaf6cf73346881edc8f823f578be6 351 SUPERFAMILY SSF51735 138 313 2.63E-41 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_00530 c2cfaf6cf73346881edc8f823f578be6 351 SMART SM00829 8 345 8.0E-6 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AP3564_00530 c2cfaf6cf73346881edc8f823f578be6 351 Pfam PF00107 Zinc-binding dehydrogenase 172 289 8.5E-28 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AP3564_00530 c2cfaf6cf73346881edc8f823f578be6 351 Gene3D G3DSA:3.40.50.720 149 286 3.6E-108 T 13-10-2018 AP3564_00530 c2cfaf6cf73346881edc8f823f578be6 351 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 58 72 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AP3564_00530 c2cfaf6cf73346881edc8f823f578be6 351 SUPERFAMILY SSF50129 1 170 7.91E-51 T 13-10-2018 IPR011032 GroES-like superfamily AP3564_00530 c2cfaf6cf73346881edc8f823f578be6 351 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 129 3.1E-30 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AP3564_00530 c2cfaf6cf73346881edc8f823f578be6 351 Gene3D G3DSA:3.90.180.10 20 328 3.6E-108 T 13-10-2018 AP3564_06440 0f7816710908a78e3c09c3b4e88f2725 240 Gene3D G3DSA:3.40.50.300 1 231 3.1E-63 T 13-10-2018 AP3564_06440 0f7816710908a78e3c09c3b4e88f2725 240 Pfam PF00005 ABC transporter 20 160 2.8E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_06440 0f7816710908a78e3c09c3b4e88f2725 240 SUPERFAMILY SSF52540 3 214 2.66E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_06440 0f7816710908a78e3c09c3b4e88f2725 240 SMART SM00382 28 209 8.9E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_01625 a2f6159eeaef1e8b60074bf084a5fef0 236 Pfam PF12710 haloacid dehalogenase-like hydrolase 12 184 1.1E-16 T 13-10-2018 AP3564_01625 a2f6159eeaef1e8b60074bf084a5fef0 236 Hamap MF_01680 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase [mtnX]. 8 223 47.023 T 13-10-2018 IPR017718 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase GO:0016791|GO:0071267 KEGG: 00270+3.1.3.87|MetaCyc: PWY-4361 AP3564_01625 a2f6159eeaef1e8b60074bf084a5fef0 236 TIGRFAM TIGR01489 DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 9 193 6.6E-47 T 13-10-2018 IPR006384 Pyridoxal phosphate phosphatase-related GO:0016791 AP3564_01625 a2f6159eeaef1e8b60074bf084a5fef0 236 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 11 185 1.7E-30 T 13-10-2018 AP3564_01625 a2f6159eeaef1e8b60074bf084a5fef0 236 Gene3D G3DSA:3.40.50.1000 12 215 1.6E-63 T 13-10-2018 IPR023214 HAD superfamily AP3564_01625 a2f6159eeaef1e8b60074bf084a5fef0 236 Gene3D G3DSA:3.90.1470.20 21 140 1.6E-63 T 13-10-2018 AP3564_01625 a2f6159eeaef1e8b60074bf084a5fef0 236 SUPERFAMILY SSF56784 9 230 2.1E-50 T 13-10-2018 IPR036412 HAD-like superfamily AP3564_01625 a2f6159eeaef1e8b60074bf084a5fef0 236 TIGRFAM TIGR03333 salvage_mtnX: 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase 11 222 1.8E-96 T 13-10-2018 IPR017718 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase GO:0016791|GO:0071267 KEGG: 00270+3.1.3.87|MetaCyc: PWY-4361 AP3564_19270 4924f427088a8a945c22f35c1f4ee62e 59 ProDom PD052450 H SPORE ACID-SOLUBLE SMALL SASP SPORULATION SMALL PROTEIN-RELATED SOLUBLE RBL04815 1 58 8.0E-6 T 13-10-2018 IPR012610 Small acid-soluble spore protein, SspH GO:0030436|GO:0042601 AP3564_19270 4924f427088a8a945c22f35c1f4ee62e 59 Hamap MF_00667 Small, acid-soluble spore protein H [sspH]. 1 59 14.777 T 13-10-2018 IPR012610 Small acid-soluble spore protein, SspH GO:0030436|GO:0042601 AP3564_19270 4924f427088a8a945c22f35c1f4ee62e 59 Pfam PF08141 Small acid-soluble spore protein H family 1 58 6.5E-22 T 13-10-2018 IPR012610 Small acid-soluble spore protein, SspH GO:0030436|GO:0042601 AP3564_19270 4924f427088a8a945c22f35c1f4ee62e 59 TIGRFAM TIGR02861 SASP_H: small acid-soluble spore protein, H-type 1 58 1.5E-13 T 13-10-2018 IPR012610 Small acid-soluble spore protein, SspH GO:0030436|GO:0042601 AP3564_04730 7664e1cf06bddb27b47247c3980373a2 610 Gene3D G3DSA:3.30.565.10 450 609 1.2E-51 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_04730 7664e1cf06bddb27b47247c3980373a2 610 SMART SM00387 491 603 3.2E-44 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_04730 7664e1cf06bddb27b47247c3980373a2 610 SMART SM00388 379 446 4.5E-22 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AP3564_04730 7664e1cf06bddb27b47247c3980373a2 610 SUPERFAMILY SSF158472 207 256 1.44E-10 T 13-10-2018 AP3564_04730 7664e1cf06bddb27b47247c3980373a2 610 SUPERFAMILY SSF55874 435 603 1.96E-49 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_04730 7664e1cf06bddb27b47247c3980373a2 610 Gene3D G3DSA:1.10.287.130 205 278 2.7E-11 T 13-10-2018 AP3564_04730 7664e1cf06bddb27b47247c3980373a2 610 SMART SM00091 266 332 1.0E-7 T 13-10-2018 IPR000014 PAS domain AP3564_04730 7664e1cf06bddb27b47247c3980373a2 610 Gene3D G3DSA:1.10.287.130 371 449 6.9E-30 T 13-10-2018 AP3564_04730 7664e1cf06bddb27b47247c3980373a2 610 SMART SM00304 207 259 1.9E-15 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AP3564_04730 7664e1cf06bddb27b47247c3980373a2 610 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 493 602 1.0E-31 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_04730 7664e1cf06bddb27b47247c3980373a2 610 Pfam PF00512 His Kinase A (phospho-acceptor) domain 380 445 1.8E-18 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AP3564_04730 7664e1cf06bddb27b47247c3980373a2 610 Pfam PF13426 PAS domain 277 372 1.7E-8 T 13-10-2018 IPR000014 PAS domain AP3564_04730 7664e1cf06bddb27b47247c3980373a2 610 PRINTS PR00344 Bacterial sensor protein C-terminal signature 563 581 2.0E-20 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_04730 7664e1cf06bddb27b47247c3980373a2 610 PRINTS PR00344 Bacterial sensor protein C-terminal signature 546 556 2.0E-20 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_04730 7664e1cf06bddb27b47247c3980373a2 610 PRINTS PR00344 Bacterial sensor protein C-terminal signature 587 600 2.0E-20 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_04730 7664e1cf06bddb27b47247c3980373a2 610 PRINTS PR00344 Bacterial sensor protein C-terminal signature 528 542 2.0E-20 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_04730 7664e1cf06bddb27b47247c3980373a2 610 SUPERFAMILY SSF47384 365 446 7.26E-21 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AP3564_04730 7664e1cf06bddb27b47247c3980373a2 610 Gene3D G3DSA:3.30.450.20 279 370 2.1E-21 T 13-10-2018 AP3564_04730 7664e1cf06bddb27b47247c3980373a2 610 Gene3D G3DSA:3.30.450.20 34 185 3.8E-41 T 13-10-2018 AP3564_04730 7664e1cf06bddb27b47247c3980373a2 610 SUPERFAMILY SSF55785 254 371 8.03E-13 T 13-10-2018 IPR035965 PAS domain superfamily AP3564_04730 7664e1cf06bddb27b47247c3980373a2 610 Pfam PF00672 HAMP domain 207 255 2.2E-12 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AP3564_08440 06a6f736310825a08ee5086819047010 692 SUPERFAMILY SSF55008 2 60 4.06E-8 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 AP3564_08440 06a6f736310825a08ee5086819047010 692 Pfam PF00403 Heavy-metal-associated domain 4 56 2.1E-5 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AP3564_08440 06a6f736310825a08ee5086819047010 692 Gene3D G3DSA:3.30.70.100 2 67 5.7E-8 T 13-10-2018 AP3564_08440 06a6f736310825a08ee5086819047010 692 Gene3D G3DSA:2.70.150.20 174 286 1.5E-37 T 13-10-2018 AP3564_08440 06a6f736310825a08ee5086819047010 692 ProSitePatterns PS01229 Hypothetical cof family signature 2. 576 598 - T 13-10-2018 AP3564_08440 06a6f736310825a08ee5086819047010 692 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 131 677 1.9E-182 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AP3564_08440 06a6f736310825a08ee5086819047010 692 SUPERFAMILY SSF56784 380 673 2.66E-52 T 13-10-2018 IPR036412 HAD-like superfamily AP3564_08440 06a6f736310825a08ee5086819047010 692 Pfam PF00122 E1-E2 ATPase 183 362 1.2E-56 T 13-10-2018 AP3564_08440 06a6f736310825a08ee5086819047010 692 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 116 678 7.0E-129 T 13-10-2018 AP3564_08440 06a6f736310825a08ee5086819047010 692 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 384 390 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 AP3564_08440 06a6f736310825a08ee5086819047010 692 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 131 476 1.0E-102 T 13-10-2018 AP3564_08440 06a6f736310825a08ee5086819047010 692 SUPERFAMILY SSF81665 133 633 6.93E-19 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 AP3564_08440 06a6f736310825a08ee5086819047010 692 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 155 656 2.0E-92 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AP3564_08440 06a6f736310825a08ee5086819047010 692 SUPERFAMILY SSF81653 184 281 3.01E-26 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 AP3564_08440 06a6f736310825a08ee5086819047010 692 Pfam PF00702 haloacid dehalogenase-like hydrolase 380 590 1.7E-39 T 13-10-2018 AP3564_08440 06a6f736310825a08ee5086819047010 692 PRINTS PR00941 Cadmium-transporting ATPase signature 166 186 1.6E-26 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AP3564_08440 06a6f736310825a08ee5086819047010 692 PRINTS PR00941 Cadmium-transporting ATPase signature 186 202 1.6E-26 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AP3564_08440 06a6f736310825a08ee5086819047010 692 PRINTS PR00941 Cadmium-transporting ATPase signature 266 280 1.6E-26 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AP3564_08440 06a6f736310825a08ee5086819047010 692 PRINTS PR00941 Cadmium-transporting ATPase signature 247 263 1.6E-26 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AP3564_08440 06a6f736310825a08ee5086819047010 692 PRINTS PR00941 Cadmium-transporting ATPase signature 112 124 1.6E-26 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AP3564_08440 06a6f736310825a08ee5086819047010 692 PRINTS PR00941 Cadmium-transporting ATPase signature 15 36 1.6E-26 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AP3564_08440 06a6f736310825a08ee5086819047010 692 PRINTS PR00941 Cadmium-transporting ATPase signature 4 13 1.6E-26 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AP3564_08440 06a6f736310825a08ee5086819047010 692 Gene3D G3DSA:3.40.50.1000 363 627 5.1E-85 T 13-10-2018 IPR023214 HAD superfamily AP3564_08440 06a6f736310825a08ee5086819047010 692 Gene3D G3DSA:3.40.1110.10 393 508 5.1E-85 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AP3564_08440 06a6f736310825a08ee5086819047010 692 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 524 534 5.5E-26 T 13-10-2018 AP3564_08440 06a6f736310825a08ee5086819047010 692 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 382 396 5.5E-26 T 13-10-2018 AP3564_08440 06a6f736310825a08ee5086819047010 692 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 501 512 5.5E-26 T 13-10-2018 AP3564_08440 06a6f736310825a08ee5086819047010 692 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 599 611 5.5E-26 T 13-10-2018 AP3564_08440 06a6f736310825a08ee5086819047010 692 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 231 245 5.5E-26 T 13-10-2018 AP3564_08440 06a6f736310825a08ee5086819047010 692 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 576 595 5.5E-26 T 13-10-2018 AP3564_02235 ce1e004830413fb4c3c1d9543b58e5b8 165 Pfam PF00583 Acetyltransferase (GNAT) family 41 153 9.5E-12 T 13-10-2018 IPR000182 GNAT domain AP3564_02235 ce1e004830413fb4c3c1d9543b58e5b8 165 Gene3D G3DSA:3.40.630.30 9 163 8.0E-28 T 13-10-2018 AP3564_02235 ce1e004830413fb4c3c1d9543b58e5b8 165 SUPERFAMILY SSF55729 7 159 1.62E-20 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase AP3564_16560 5c0ac90401e5a4fbba990d4f2e4221aa 431 Pfam PF00860 Permease family 18 386 5.5E-108 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 AP3564_16560 5c0ac90401e5a4fbba990d4f2e4221aa 431 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 335 355 - T 13-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 AP3564_16560 5c0ac90401e5a4fbba990d4f2e4221aa 431 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 13 412 1.1E-129 T 13-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 AP3564_00740 38c380dfda117e2e77bea49b68883f19 243 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 6 237 34.307 T 13-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AP3564_00740 38c380dfda117e2e77bea49b68883f19 243 SUPERFAMILY SSF56104 3 237 1.21E-83 T 13-10-2018 AP3564_00740 38c380dfda117e2e77bea49b68883f19 243 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 1 236 6.5E-81 T 13-10-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 AP3564_00740 38c380dfda117e2e77bea49b68883f19 243 Pfam PF01259 SAICAR synthetase 9 234 2.6E-68 T 13-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AP3564_00740 38c380dfda117e2e77bea49b68883f19 243 Gene3D G3DSA:3.30.200.20 9 234 5.1E-99 T 13-10-2018 AP3564_00740 38c380dfda117e2e77bea49b68883f19 243 ProSitePatterns PS01058 SAICAR synthetase signature 2. 175 183 - T 13-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AP3564_00740 38c380dfda117e2e77bea49b68883f19 243 ProSitePatterns PS01057 SAICAR synthetase signature 1. 88 102 - T 13-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AP3564_00740 38c380dfda117e2e77bea49b68883f19 243 Gene3D G3DSA:3.30.470.20 87 223 5.1E-99 T 13-10-2018 AP3564_18785 25335b53f86be4a0a417f2402ce828b0 202 SUPERFAMILY SSF50249 2 62 4.8E-15 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_18785 25335b53f86be4a0a417f2402ce828b0 202 Gene3D G3DSA:2.40.50.140 1 64 1.3E-17 T 13-10-2018 AP3564_18785 25335b53f86be4a0a417f2402ce828b0 202 SUPERFAMILY SSF46929 155 200 2.88E-9 T 13-10-2018 IPR036267 RuvA, C-terminal domain superfamily AP3564_18785 25335b53f86be4a0a417f2402ce828b0 202 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 201 28.781 T 13-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 AP3564_18785 25335b53f86be4a0a417f2402ce828b0 202 Gene3D G3DSA:1.10.150.20 65 135 4.2E-24 T 13-10-2018 AP3564_18785 25335b53f86be4a0a417f2402ce828b0 202 SUPERFAMILY SSF47781 65 135 3.34E-21 T 13-10-2018 IPR010994 RuvA domain 2-like AP3564_18785 25335b53f86be4a0a417f2402ce828b0 202 Pfam PF14520 Helix-hairpin-helix domain 71 128 3.2E-14 T 13-10-2018 AP3564_18785 25335b53f86be4a0a417f2402ce828b0 202 Pfam PF07499 RuvA, C-terminal domain 160 200 3.5E-10 T 13-10-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 AP3564_18785 25335b53f86be4a0a417f2402ce828b0 202 Pfam PF01330 RuvA N terminal domain 2 61 2.8E-17 T 13-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 AP3564_18785 25335b53f86be4a0a417f2402ce828b0 202 SMART SM00278 107 126 0.7 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AP3564_18785 25335b53f86be4a0a417f2402ce828b0 202 SMART SM00278 72 91 0.13 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AP3564_18785 25335b53f86be4a0a417f2402ce828b0 202 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 201 5.7E-57 T 13-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 AP3564_12175 71be9caba8fc8212e761d1a17ce77a57 341 Gene3D G3DSA:3.40.50.720 191 340 5.8E-53 T 13-10-2018 AP3564_12175 71be9caba8fc8212e761d1a17ce77a57 341 Pfam PF13478 XdhC Rossmann domain 192 327 9.0E-32 T 13-10-2018 IPR027051 XdhC Rossmann domain AP3564_12175 71be9caba8fc8212e761d1a17ce77a57 341 Pfam PF02625 XdhC and CoxI family 15 76 7.5E-20 T 13-10-2018 IPR003777 XdhC- CoxI AP3564_15275 7d2f86de20dd104983fc02b5c90a3c9b 393 Pfam PF01609 Transposase DDE domain 141 344 7.0E-20 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_15275 7d2f86de20dd104983fc02b5c90a3c9b 393 SUPERFAMILY SSF53098 24 344 1.14E-21 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_15275 7d2f86de20dd104983fc02b5c90a3c9b 393 Gene3D G3DSA:3.90.350.10 230 327 1.3E-5 T 13-10-2018 IPR014736 Transposase, Tn5-like, core AP3564_00995 7d2f86de20dd104983fc02b5c90a3c9b 393 Pfam PF01609 Transposase DDE domain 141 344 7.0E-20 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_00995 7d2f86de20dd104983fc02b5c90a3c9b 393 SUPERFAMILY SSF53098 24 344 1.14E-21 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_00995 7d2f86de20dd104983fc02b5c90a3c9b 393 Gene3D G3DSA:3.90.350.10 230 327 1.3E-5 T 13-10-2018 IPR014736 Transposase, Tn5-like, core AP3564_13515 7d2f86de20dd104983fc02b5c90a3c9b 393 Pfam PF01609 Transposase DDE domain 141 344 7.0E-20 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_13515 7d2f86de20dd104983fc02b5c90a3c9b 393 SUPERFAMILY SSF53098 24 344 1.14E-21 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_13515 7d2f86de20dd104983fc02b5c90a3c9b 393 Gene3D G3DSA:3.90.350.10 230 327 1.3E-5 T 13-10-2018 IPR014736 Transposase, Tn5-like, core AP3564_13620 7d2f86de20dd104983fc02b5c90a3c9b 393 Pfam PF01609 Transposase DDE domain 141 344 7.0E-20 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_13620 7d2f86de20dd104983fc02b5c90a3c9b 393 SUPERFAMILY SSF53098 24 344 1.14E-21 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_13620 7d2f86de20dd104983fc02b5c90a3c9b 393 Gene3D G3DSA:3.90.350.10 230 327 1.3E-5 T 13-10-2018 IPR014736 Transposase, Tn5-like, core AP3564_01915 7d2f86de20dd104983fc02b5c90a3c9b 393 Pfam PF01609 Transposase DDE domain 141 344 7.0E-20 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_01915 7d2f86de20dd104983fc02b5c90a3c9b 393 SUPERFAMILY SSF53098 24 344 1.14E-21 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_01915 7d2f86de20dd104983fc02b5c90a3c9b 393 Gene3D G3DSA:3.90.350.10 230 327 1.3E-5 T 13-10-2018 IPR014736 Transposase, Tn5-like, core AP3564_04220 fc957272bef3f2952bb06c25af96b164 269 Gene3D G3DSA:3.40.1190.20 1 269 3.5E-90 T 13-10-2018 IPR029056 Ribokinase-like AP3564_04220 fc957272bef3f2952bb06c25af96b164 269 SUPERFAMILY SSF53613 1 265 5.61E-75 T 13-10-2018 IPR029056 Ribokinase-like AP3564_04220 fc957272bef3f2952bb06c25af96b164 269 Pfam PF08543 Phosphomethylpyrimidine kinase 13 260 1.2E-88 T 13-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 AP3564_04220 fc957272bef3f2952bb06c25af96b164 269 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 6 262 7.6E-85 T 13-10-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AP3564_13060 1503c166bea8b71a362a301eff379955 946 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 16 49 1.2E-9 T 13-10-2018 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AP3564_13060 1503c166bea8b71a362a301eff379955 946 Pfam PF00676 Dehydrogenase E1 component 224 535 5.1E-74 T 13-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 AP3564_13060 1503c166bea8b71a362a301eff379955 946 Gene3D G3DSA:3.40.50.970 157 539 5.0E-136 T 13-10-2018 AP3564_13060 1503c166bea8b71a362a301eff379955 946 Hamap MF_01169 2-oxoglutarate dehydrogenase E1 component [odhA]. 1 944 23.267 T 13-10-2018 IPR023784 2-oxoglutarate dehydrogenase E1 component, bacterial KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AP3564_13060 1503c166bea8b71a362a301eff379955 946 Pfam PF02779 Transketolase, pyrimidine binding domain 597 794 9.9E-57 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AP3564_13060 1503c166bea8b71a362a301eff379955 946 Gene3D G3DSA:3.40.50.11610 734 940 6.9E-158 T 13-10-2018 AP3564_13060 1503c166bea8b71a362a301eff379955 946 Gene3D G3DSA:3.40.50.12470 556 816 6.9E-158 T 13-10-2018 AP3564_13060 1503c166bea8b71a362a301eff379955 946 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 799 942 1.6E-43 T 13-10-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AP3564_13060 1503c166bea8b71a362a301eff379955 946 SMART SM00861 598 794 3.8E-42 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AP3564_13060 1503c166bea8b71a362a301eff379955 946 SUPERFAMILY SSF52518 580 800 1.77E-44 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold AP3564_13060 1503c166bea8b71a362a301eff379955 946 SUPERFAMILY SSF52518 156 575 9.25E-71 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold AP3564_13060 1503c166bea8b71a362a301eff379955 946 PIRSF PIRSF000157 1 944 0.0 T 13-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AP3564_13060 1503c166bea8b71a362a301eff379955 946 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 16 941 0.0 T 13-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AP3564_10755 b493820e544fc67f2e143fdbf19b9020 240 Gene3D G3DSA:3.40.50.300 1 228 5.6E-53 T 13-10-2018 AP3564_10755 b493820e544fc67f2e143fdbf19b9020 240 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 6 176 1.7E-39 T 13-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 AP3564_10755 b493820e544fc67f2e143fdbf19b9020 240 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 2 223 26.34 T 13-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 AP3564_10755 b493820e544fc67f2e143fdbf19b9020 240 SUPERFAMILY SSF52540 1 220 1.06E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_10755 b493820e544fc67f2e143fdbf19b9020 240 Pfam PF13500 AAA domain 3 212 5.5E-40 T 13-10-2018 AP3564_10755 b493820e544fc67f2e143fdbf19b9020 240 PIRSF PIRSF006755 1 233 1.2E-57 T 13-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 AP3564_13580 023df9df0ecf32e5382558d7ce4d5d7e 302 SUPERFAMILY SSF51735 1 177 8.94E-19 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_13580 023df9df0ecf32e5382558d7ce4d5d7e 302 Gene3D G3DSA:1.10.1040.10 177 302 4.6E-37 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AP3564_13580 023df9df0ecf32e5382558d7ce4d5d7e 302 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 301 1.2E-81 T 13-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 AP3564_13580 023df9df0ecf32e5382558d7ce4d5d7e 302 SUPERFAMILY SSF48179 176 299 7.14E-31 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AP3564_13580 023df9df0ecf32e5382558d7ce4d5d7e 302 Gene3D G3DSA:3.40.50.720 1 174 2.6E-52 T 13-10-2018 AP3564_13580 023df9df0ecf32e5382558d7ce4d5d7e 302 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 150 2.7E-37 T 13-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain AP3564_13580 023df9df0ecf32e5382558d7ce4d5d7e 302 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 176 295 4.5E-34 T 13-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain AP3564_07960 cc3c2b4874cff5c5a9d069bdde0dbc22 462 Gene3D G3DSA:3.40.640.10 76 340 5.8E-143 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_07960 cc3c2b4874cff5c5a9d069bdde0dbc22 462 Gene3D G3DSA:3.90.1150.10 27 448 5.8E-143 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_07960 cc3c2b4874cff5c5a9d069bdde0dbc22 462 Pfam PF00202 Aminotransferase class-III 42 450 4.3E-89 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AP3564_07960 cc3c2b4874cff5c5a9d069bdde0dbc22 462 SUPERFAMILY SSF53383 25 452 5.46E-113 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_07960 cc3c2b4874cff5c5a9d069bdde0dbc22 462 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 255 292 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AP3564_15800 0fc8b5fd68d68436184b35cbdd335ada 632 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 209 325 1.8E-35 T 13-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 AP3564_15800 0fc8b5fd68d68436184b35cbdd335ada 632 SUPERFAMILY SSF54211 189 326 4.55E-36 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AP3564_15800 0fc8b5fd68d68436184b35cbdd335ada 632 Gene3D G3DSA:3.30.230.10 213 325 3.4E-31 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AP3564_15800 0fc8b5fd68d68436184b35cbdd335ada 632 SMART SM00853 446 588 2.0E-56 T 13-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 AP3564_15800 0fc8b5fd68d68436184b35cbdd335ada 632 Gene3D G3DSA:3.30.1370.100 488 581 3.3E-67 T 13-10-2018 AP3564_15800 0fc8b5fd68d68436184b35cbdd335ada 632 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 3 306 1.1E-97 T 13-10-2018 IPR002099 DNA mismatch repair protein family, N-terminal GO:0005524|GO:0006298|GO:0030983 AP3564_15800 0fc8b5fd68d68436184b35cbdd335ada 632 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 25 125 1.6E-11 T 13-10-2018 AP3564_15800 0fc8b5fd68d68436184b35cbdd335ada 632 SUPERFAMILY SSF55874 6 213 5.89E-53 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_15800 0fc8b5fd68d68436184b35cbdd335ada 632 SMART SM01340 208 326 4.5E-52 T 13-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 AP3564_15800 0fc8b5fd68d68436184b35cbdd335ada 632 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 94 100 - T 13-10-2018 IPR014762 DNA mismatch repair, conserved site AP3564_15800 0fc8b5fd68d68436184b35cbdd335ada 632 SUPERFAMILY SSF118116 442 630 6.8E-57 T 13-10-2018 IPR037198 MutL, C-terminal domain superfamily AP3564_15800 0fc8b5fd68d68436184b35cbdd335ada 632 Gene3D G3DSA:3.30.565.10 4 212 9.9E-62 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_15800 0fc8b5fd68d68436184b35cbdd335ada 632 Pfam PF08676 MutL C terminal dimerisation domain 447 588 2.3E-49 T 13-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 AP3564_15800 0fc8b5fd68d68436184b35cbdd335ada 632 Gene3D G3DSA:2.30.42.20 447 630 3.3E-67 T 13-10-2018 AP3564_15800 0fc8b5fd68d68436184b35cbdd335ada 632 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 2 628 27.542 T 13-10-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 AP3564_07505 aa2102f29dc7fc36288eb2d0b54169cc 315 SUPERFAMILY SSF46689 14 73 9.85E-6 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_07505 aa2102f29dc7fc36288eb2d0b54169cc 315 Gene3D G3DSA:1.10.10.60 1 53 5.6E-21 T 13-10-2018 AP3564_07505 aa2102f29dc7fc36288eb2d0b54169cc 315 SUPERFAMILY SSF100950 59 313 7.28E-73 T 13-10-2018 IPR037171 NagB/RpiA transferase-like AP3564_07505 aa2102f29dc7fc36288eb2d0b54169cc 315 Gene3D G3DSA:3.40.50.1360 56 314 9.3E-89 T 13-10-2018 AP3564_07505 aa2102f29dc7fc36288eb2d0b54169cc 315 Pfam PF04198 Putative sugar-binding domain 60 312 1.5E-77 T 13-10-2018 IPR007324 Sugar-binding domain, putative GO:0030246 AP3564_05315 443e0dbfb20093294479488efc1a4e7e 292 Gene3D G3DSA:3.20.10.10 122 275 3.2E-45 T 13-10-2018 AP3564_05315 443e0dbfb20093294479488efc1a4e7e 292 Gene3D G3DSA:3.30.470.10 1 121 4.7E-34 T 13-10-2018 AP3564_05315 443e0dbfb20093294479488efc1a4e7e 292 ProSitePatterns PS00770 Aminotransferases class-IV signature. 177 206 - T 13-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 AP3564_05315 443e0dbfb20093294479488efc1a4e7e 292 SUPERFAMILY SSF56752 3 272 6.67E-74 T 13-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 AP3564_05315 443e0dbfb20093294479488efc1a4e7e 292 Pfam PF01063 Amino-transferase class IV 29 251 1.5E-53 T 13-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 AP3564_15360 026f47f5a91f136a3ac38170fdb97e8d 239 Gene3D G3DSA:3.40.1410.10 77 239 6.6E-39 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily AP3564_15360 026f47f5a91f136a3ac38170fdb97e8d 239 Pfam PF07702 UTRA domain 95 234 7.4E-29 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AP3564_15360 026f47f5a91f136a3ac38170fdb97e8d 239 Gene3D G3DSA:1.10.10.10 8 76 1.5E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_15360 026f47f5a91f136a3ac38170fdb97e8d 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 63 9.2E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_15360 026f47f5a91f136a3ac38170fdb97e8d 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 33 47 9.2E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_15360 026f47f5a91f136a3ac38170fdb97e8d 239 SMART SM00345 14 73 1.1E-19 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_15360 026f47f5a91f136a3ac38170fdb97e8d 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 73 3.9E-19 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_15360 026f47f5a91f136a3ac38170fdb97e8d 239 SUPERFAMILY SSF46785 1 87 1.72E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_15360 026f47f5a91f136a3ac38170fdb97e8d 239 SUPERFAMILY SSF64288 61 236 3.3E-42 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily AP3564_15360 026f47f5a91f136a3ac38170fdb97e8d 239 SMART SM00866 94 234 3.2E-27 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AP3564_10025 4bbce67c463574e946662e59e17e8124 102 SUPERFAMILY SSF117916 1 100 1.9E-33 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily AP3564_10025 4bbce67c463574e946662e59e17e8124 102 Pfam PF01883 Iron-sulfur cluster assembly protein 6 80 6.2E-22 T 13-10-2018 IPR002744 MIP18 family-like AP3564_10025 4bbce67c463574e946662e59e17e8124 102 Gene3D G3DSA:3.30.300.130 1 102 1.4E-37 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily AP3564_02335 7c9b000a937e25f41fc07f83ca634048 368 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 44 176 1.3E-22 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AP3564_02335 7c9b000a937e25f41fc07f83ca634048 368 Gene3D G3DSA:1.10.1670.10 19 222 2.4E-94 T 13-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 AP3564_02335 7c9b000a937e25f41fc07f83ca634048 368 Pfam PF00633 Helix-hairpin-helix motif 108 137 1.4E-6 T 13-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 AP3564_02335 7c9b000a937e25f41fc07f83ca634048 368 SMART SM00478 48 199 5.8E-59 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AP3564_02335 7c9b000a937e25f41fc07f83ca634048 368 SMART SM00525 200 220 4.1E-4 T 13-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 AP3564_02335 7c9b000a937e25f41fc07f83ca634048 368 Gene3D G3DSA:3.90.79.10 238 366 5.0E-25 T 13-10-2018 AP3564_02335 7c9b000a937e25f41fc07f83ca634048 368 Pfam PF14815 NUDIX domain 244 356 2.9E-21 T 13-10-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 AP3564_02335 7c9b000a937e25f41fc07f83ca634048 368 SUPERFAMILY SSF55811 241 359 2.8E-22 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AP3564_02335 7c9b000a937e25f41fc07f83ca634048 368 SUPERFAMILY SSF48150 13 231 8.64E-79 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 AP3564_02335 7c9b000a937e25f41fc07f83ca634048 368 Gene3D G3DSA:1.10.340.30 30 141 2.4E-94 T 13-10-2018 AP3564_02335 7c9b000a937e25f41fc07f83ca634048 368 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 16 276 9.6E-112 T 13-10-2018 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 AP3564_12810 a7aca6226a178cb93ea8c65bff16faf8 144 Gene3D G3DSA:3.40.30.10 25 144 1.7E-53 T 13-10-2018 AP3564_12810 a7aca6226a178cb93ea8c65bff16faf8 144 TIGRFAM TIGR04191 YphP_YqiW: putative bacilliredoxin, YphP/YqiW family 8 144 1.5E-65 T 13-10-2018 IPR009474 Putative bacilliredoxin, YphP/YqiW family AP3564_12810 a7aca6226a178cb93ea8c65bff16faf8 144 Pfam PF06491 Disulphide isomerase 8 144 1.4E-62 T 13-10-2018 IPR009474 Putative bacilliredoxin, YphP/YqiW family AP3564_09870 1ea9b3e5ea93620e2062d8322845502e 150 Gene3D G3DSA:1.10.10.10 1 141 7.1E-42 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_09870 1ea9b3e5ea93620e2062d8322845502e 150 Pfam PF02082 Transcriptional regulator 2 82 8.9E-23 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type AP3564_09870 1ea9b3e5ea93620e2062d8322845502e 150 SUPERFAMILY SSF46785 2 134 7.18E-33 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_09870 1ea9b3e5ea93620e2062d8322845502e 150 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 2 133 5.3E-36 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type AP3564_09870 1ea9b3e5ea93620e2062d8322845502e 150 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 48 66 - T 13-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site AP3564_13765 50623e509c6c14c55e5e92ca5470af6b 370 Pfam PF03459 TOBE domain 298 355 5.8E-8 T 13-10-2018 IPR005116 Transport-associated OB, type 1 AP3564_13765 50623e509c6c14c55e5e92ca5470af6b 370 Pfam PF00005 ABC transporter 21 162 3.0E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_13765 50623e509c6c14c55e5e92ca5470af6b 370 SMART SM00382 29 212 1.1E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_13765 50623e509c6c14c55e5e92ca5470af6b 370 SUPERFAMILY SSF50331 237 365 2.43E-30 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AP3564_13765 50623e509c6c14c55e5e92ca5470af6b 370 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_13765 50623e509c6c14c55e5e92ca5470af6b 370 SUPERFAMILY SSF52540 4 243 1.91E-86 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_13765 50623e509c6c14c55e5e92ca5470af6b 370 Gene3D G3DSA:2.40.50.100 240 362 6.6E-37 T 13-10-2018 AP3564_13765 50623e509c6c14c55e5e92ca5470af6b 370 Gene3D G3DSA:3.40.50.300 1 239 6.1E-76 T 13-10-2018 AP3564_13765 50623e509c6c14c55e5e92ca5470af6b 370 Gene3D G3DSA:2.40.50.140 303 348 6.6E-37 T 13-10-2018 AP3564_01910 334fd063dd1760daf355919545ba53c3 414 Pfam PF14294 Domain of unknown function (DUF4372) 6 66 2.2E-6 T 13-10-2018 IPR025399 Domain of unknown function DUF4372 AP3564_01910 334fd063dd1760daf355919545ba53c3 414 Pfam PF01609 Transposase DDE domain 121 333 1.3E-30 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_01910 334fd063dd1760daf355919545ba53c3 414 SUPERFAMILY SSF53098 74 360 8.34E-43 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_05855 84ed5dfa8fe6d565c7f73d37cc505f13 121 Gene3D G3DSA:4.10.910.10 72 121 1.5E-26 T 13-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05855 84ed5dfa8fe6d565c7f73d37cc505f13 121 PIRSF PIRSF002134 1 121 1.0E-44 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05855 84ed5dfa8fe6d565c7f73d37cc505f13 121 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 28.811 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05855 84ed5dfa8fe6d565c7f73d37cc505f13 121 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 13-10-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05855 84ed5dfa8fe6d565c7f73d37cc505f13 121 Gene3D G3DSA:1.10.8.50 1 71 3.6E-31 T 13-10-2018 AP3564_05855 84ed5dfa8fe6d565c7f73d37cc505f13 121 Pfam PF00416 Ribosomal protein S13/S18 3 108 9.7E-36 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05855 84ed5dfa8fe6d565c7f73d37cc505f13 121 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 9.3E-55 T 13-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05855 84ed5dfa8fe6d565c7f73d37cc505f13 121 SUPERFAMILY SSF46946 2 114 4.71E-47 T 13-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 AP3564_19560 7fcc4f5068c32e474ff32e57570c17e3 200 Gene3D G3DSA:3.10.290.10 98 176 4.8E-34 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AP3564_19560 7fcc4f5068c32e474ff32e57570c17e3 200 Gene3D G3DSA:1.10.1050.10 177 200 1.3E-5 T 13-10-2018 AP3564_19560 7fcc4f5068c32e474ff32e57570c17e3 200 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 200 37.144 T 13-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 AP3564_19560 7fcc4f5068c32e474ff32e57570c17e3 200 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 91 6.3E-30 T 13-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 AP3564_19560 7fcc4f5068c32e474ff32e57570c17e3 200 SMART SM01390 3 91 5.8E-50 T 13-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 AP3564_19560 7fcc4f5068c32e474ff32e57570c17e3 200 ProSitePatterns PS00632 Ribosomal protein S4 signature. 90 114 - T 13-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_19560 7fcc4f5068c32e474ff32e57570c17e3 200 Gene3D G3DSA:1.10.1050.10 1 97 1.1E-36 T 13-10-2018 AP3564_19560 7fcc4f5068c32e474ff32e57570c17e3 200 SUPERFAMILY SSF55174 3 200 3.27E-72 T 13-10-2018 AP3564_19560 7fcc4f5068c32e474ff32e57570c17e3 200 Pfam PF01479 S4 domain 93 139 1.4E-21 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_19560 7fcc4f5068c32e474ff32e57570c17e3 200 SMART SM00363 92 156 1.0E-19 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_19560 7fcc4f5068c32e474ff32e57570c17e3 200 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 200 9.3E-88 T 13-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 AP3564_04465 26819d7b857b84909e7a45f384f9bdfd 334 PRINTS PR00344 Bacterial sensor protein C-terminal signature 310 323 2.1E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_04465 26819d7b857b84909e7a45f384f9bdfd 334 PRINTS PR00344 Bacterial sensor protein C-terminal signature 252 266 2.1E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_04465 26819d7b857b84909e7a45f384f9bdfd 334 PRINTS PR00344 Bacterial sensor protein C-terminal signature 286 304 2.1E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_04465 26819d7b857b84909e7a45f384f9bdfd 334 PRINTS PR00344 Bacterial sensor protein C-terminal signature 270 280 2.1E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_04465 26819d7b857b84909e7a45f384f9bdfd 334 Gene3D G3DSA:1.10.287.130 123 169 3.1E-32 T 13-10-2018 AP3564_04465 26819d7b857b84909e7a45f384f9bdfd 334 SMART SM00387 216 326 3.5E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_04465 26819d7b857b84909e7a45f384f9bdfd 334 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 217 325 8.6E-19 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_04465 26819d7b857b84909e7a45f384f9bdfd 334 Gene3D G3DSA:3.30.565.10 174 323 3.1E-32 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_04465 26819d7b857b84909e7a45f384f9bdfd 334 SUPERFAMILY SSF55874 175 323 3.41E-31 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_03265 9fe54f891b1f9114050db37f6514293e 334 Gene3D G3DSA:3.40.50.2300 64 311 8.2E-95 T 13-10-2018 AP3564_03265 9fe54f891b1f9114050db37f6514293e 334 Gene3D G3DSA:3.40.50.2300 162 292 8.2E-95 T 13-10-2018 AP3564_03265 9fe54f891b1f9114050db37f6514293e 334 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 15 25 4.4E-6 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AP3564_03265 9fe54f891b1f9114050db37f6514293e 334 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 5 15 4.4E-6 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AP3564_03265 9fe54f891b1f9114050db37f6514293e 334 Pfam PF13377 Periplasmic binding protein-like domain 170 332 1.0E-34 T 13-10-2018 AP3564_03265 9fe54f891b1f9114050db37f6514293e 334 Pfam PF00356 Bacterial regulatory proteins, lacI family 5 50 1.1E-19 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AP3564_03265 9fe54f891b1f9114050db37f6514293e 334 SUPERFAMILY SSF47413 2 61 3.44E-20 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AP3564_03265 9fe54f891b1f9114050db37f6514293e 334 ProSitePatterns PS00356 LacI-type HTH domain signature. 6 24 - T 13-10-2018 AP3564_03265 9fe54f891b1f9114050db37f6514293e 334 Gene3D G3DSA:1.10.260.40 2 61 8.0E-29 T 13-10-2018 AP3564_03265 9fe54f891b1f9114050db37f6514293e 334 SMART SM00354 3 73 2.5E-38 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AP3564_03265 9fe54f891b1f9114050db37f6514293e 334 TIGRFAM TIGR01481 ccpA: catabolite control protein A 3 333 2.6E-160 T 13-10-2018 IPR006377 Catabolite control protein A GO:0006355 AP3564_03265 9fe54f891b1f9114050db37f6514293e 334 SUPERFAMILY SSF53822 63 333 1.67E-91 T 13-10-2018 IPR028082 Periplasmic binding protein-like I AP3564_09210 8d63b2fe226adf8809cd81b6606b4610 212 SMART SM00448 2 116 5.0E-21 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_09210 8d63b2fe226adf8809cd81b6606b4610 212 Gene3D G3DSA:3.40.50.12740 2 212 1.8E-48 T 13-10-2018 AP3564_09210 8d63b2fe226adf8809cd81b6606b4610 212 Pfam PF00196 Bacterial regulatory proteins, luxR family 151 206 4.2E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_09210 8d63b2fe226adf8809cd81b6606b4610 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 166 3.6E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_09210 8d63b2fe226adf8809cd81b6606b4610 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 194 3.6E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_09210 8d63b2fe226adf8809cd81b6606b4610 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 182 3.6E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_09210 8d63b2fe226adf8809cd81b6606b4610 212 ProSitePatterns PS00622 LuxR-type HTH domain signature. 166 193 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_09210 8d63b2fe226adf8809cd81b6606b4610 212 SMART SM00421 149 206 1.5E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_09210 8d63b2fe226adf8809cd81b6606b4610 212 SUPERFAMILY SSF52172 1 179 1.87E-23 T 13-10-2018 IPR011006 CheY-like superfamily AP3564_09210 8d63b2fe226adf8809cd81b6606b4610 212 Pfam PF00072 Response regulator receiver domain 4 116 8.4E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_06710 542a39bb5731464f66aa41ef577891ae 469 Gene3D G3DSA:1.20.1480.50 152 241 1.2E-11 T 13-10-2018 AP3564_06710 542a39bb5731464f66aa41ef577891ae 469 Pfam PF00512 His Kinase A (phospho-acceptor) domain 247 311 3.3E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AP3564_06710 542a39bb5731464f66aa41ef577891ae 469 SMART SM00387 357 469 8.1E-35 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_06710 542a39bb5731464f66aa41ef577891ae 469 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 358 467 7.0E-27 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_06710 542a39bb5731464f66aa41ef577891ae 469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 453 466 8.6E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_06710 542a39bb5731464f66aa41ef577891ae 469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 411 421 8.6E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_06710 542a39bb5731464f66aa41ef577891ae 469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 407 8.6E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_06710 542a39bb5731464f66aa41ef577891ae 469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 429 447 8.6E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_06710 542a39bb5731464f66aa41ef577891ae 469 SMART SM00304 186 238 1.7E-11 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AP3564_06710 542a39bb5731464f66aa41ef577891ae 469 Pfam PF00672 HAMP domain 189 234 3.5E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AP3564_06710 542a39bb5731464f66aa41ef577891ae 469 Gene3D G3DSA:1.10.287.130 242 312 9.2E-21 T 13-10-2018 AP3564_06710 542a39bb5731464f66aa41ef577891ae 469 SUPERFAMILY SSF47384 231 313 2.16E-17 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AP3564_06710 542a39bb5731464f66aa41ef577891ae 469 SMART SM00388 246 312 4.1E-17 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AP3564_06710 542a39bb5731464f66aa41ef577891ae 469 SUPERFAMILY SSF158472 189 235 3.79E-8 T 13-10-2018 AP3564_06710 542a39bb5731464f66aa41ef577891ae 469 SUPERFAMILY SSF55874 301 467 3.93E-39 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_06710 542a39bb5731464f66aa41ef577891ae 469 Gene3D G3DSA:3.30.565.10 313 469 3.2E-39 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_14535 b481e30803bb11cb0c028ca00d12137c 283 SUPERFAMILY SSF51430 2 263 3.01E-91 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AP3564_14535 b481e30803bb11cb0c028ca00d12137c 283 PRINTS PR00069 Aldo-keto reductase signature 154 183 2.5E-45 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AP3564_14535 b481e30803bb11cb0c028ca00d12137c 283 PRINTS PR00069 Aldo-keto reductase signature 91 109 2.5E-45 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AP3564_14535 b481e30803bb11cb0c028ca00d12137c 283 PRINTS PR00069 Aldo-keto reductase signature 35 59 2.5E-45 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AP3564_14535 b481e30803bb11cb0c028ca00d12137c 283 PRINTS PR00069 Aldo-keto reductase signature 120 137 2.5E-45 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AP3564_14535 b481e30803bb11cb0c028ca00d12137c 283 PRINTS PR00069 Aldo-keto reductase signature 193 217 2.5E-45 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AP3564_14535 b481e30803bb11cb0c028ca00d12137c 283 PIRSF PIRSF000097 1 115 3.9E-41 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AP3564_14535 b481e30803bb11cb0c028ca00d12137c 283 PIRSF PIRSF000097 111 274 1.7E-45 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AP3564_14535 b481e30803bb11cb0c028ca00d12137c 283 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 39 56 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AP3564_14535 b481e30803bb11cb0c028ca00d12137c 283 Pfam PF00248 Aldo/keto reductase family 30 257 2.0E-48 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain AP3564_14535 b481e30803bb11cb0c028ca00d12137c 283 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 120 137 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AP3564_14535 b481e30803bb11cb0c028ca00d12137c 283 Gene3D G3DSA:3.20.20.100 1 283 1.1E-122 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AP3564_14535 b481e30803bb11cb0c028ca00d12137c 283 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 226 241 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AP3564_18650 00f90173628f12563be3b6a111438c6f 878 Gene3D G3DSA:3.30.54.20 626 679 4.9E-52 T 13-10-2018 AP3564_18650 00f90173628f12563be3b6a111438c6f 878 Gene3D G3DSA:3.10.310.40 766 876 2.0E-35 T 13-10-2018 AP3564_18650 00f90173628f12563be3b6a111438c6f 878 SUPERFAMILY SSF50447 456 554 1.55E-18 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AP3564_18650 00f90173628f12563be3b6a111438c6f 878 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 655 698 5.7E-18 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 AP3564_18650 00f90173628f12563be3b6a111438c6f 878 SMART SM00863 655 698 1.0E-20 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 AP3564_18650 00f90173628f12563be3b6a111438c6f 878 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 8 857 0.0 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AP3564_18650 00f90173628f12563be3b6a111438c6f 878 Gene3D G3DSA:3.30.930.10 3 241 1.9E-96 T 13-10-2018 AP3564_18650 00f90173628f12563be3b6a111438c6f 878 SUPERFAMILY SSF55681 5 245 3.98E-90 T 13-10-2018 AP3564_18650 00f90173628f12563be3b6a111438c6f 878 Pfam PF02272 DHHA1 domain 735 874 1.2E-30 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 AP3564_18650 00f90173628f12563be3b6a111438c6f 878 Gene3D G3DSA:3.30.980.10 564 699 4.9E-52 T 13-10-2018 AP3564_18650 00f90173628f12563be3b6a111438c6f 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 300 313 1.2E-32 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AP3564_18650 00f90173628f12563be3b6a111438c6f 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 73 84 1.2E-32 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AP3564_18650 00f90173628f12563be3b6a111438c6f 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 276 292 1.2E-32 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AP3564_18650 00f90173628f12563be3b6a111438c6f 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 199 210 1.2E-32 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AP3564_18650 00f90173628f12563be3b6a111438c6f 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 226 239 1.2E-32 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AP3564_18650 00f90173628f12563be3b6a111438c6f 878 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 878 188.282 T 13-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 AP3564_18650 00f90173628f12563be3b6a111438c6f 878 SUPERFAMILY SSF101353 246 441 4.58E-71 T 13-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 AP3564_18650 00f90173628f12563be3b6a111438c6f 878 Pfam PF01411 tRNA synthetases class II (A) 8 554 1.1E-219 T 13-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 AP3564_18650 00f90173628f12563be3b6a111438c6f 878 SUPERFAMILY SSF55186 557 709 1.96E-52 T 13-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 AP3564_18650 00f90173628f12563be3b6a111438c6f 878 Gene3D G3DSA:2.40.30.130 460 554 1.9E-11 T 13-10-2018 AP3564_18040 fa18006c677c4815aeba35cd54c6178a 265 ProDom PD123329 YQHG BH2818 1 258 1.0E-91 T 13-10-2018 IPR024562 Uncharacterised protein family YqhG AP3564_18040 fa18006c677c4815aeba35cd54c6178a 265 Pfam PF11079 Bacterial protein YqhG of unknown function 1 258 2.0E-123 T 13-10-2018 IPR024562 Uncharacterised protein family YqhG AP3564_04425 438e5ddaf725c33ed5673314c778d102 263 TIGRFAM TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein 1 243 9.2E-111 T 13-10-2018 IPR012693 ABC transporter, phosphonate import, PhnC GO:0005524|GO:0015416|GO:0015716|GO:0016020 AP3564_04425 438e5ddaf725c33ed5673314c778d102 263 Pfam PF00005 ABC transporter 18 174 1.2E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_04425 438e5ddaf725c33ed5673314c778d102 263 SMART SM00382 27 223 8.7E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_04425 438e5ddaf725c33ed5673314c778d102 263 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_04425 438e5ddaf725c33ed5673314c778d102 263 Gene3D G3DSA:3.40.50.300 1 257 2.5E-64 T 13-10-2018 AP3564_04425 438e5ddaf725c33ed5673314c778d102 263 SUPERFAMILY SSF52540 1 238 2.01E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_05265 febdc20ae473656be45f29f73688cb43 324 SMART SM00220 27 264 7.1E-7 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AP3564_05265 febdc20ae473656be45f29f73688cb43 324 Gene3D G3DSA:1.10.510.10 110 263 3.5E-23 T 13-10-2018 AP3564_05265 febdc20ae473656be45f29f73688cb43 324 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 33 54 - T 13-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 AP3564_05265 febdc20ae473656be45f29f73688cb43 324 SUPERFAMILY SSF56112 12 234 2.46E-24 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily AP3564_05265 febdc20ae473656be45f29f73688cb43 324 Gene3D G3DSA:3.30.200.20 19 109 3.5E-23 T 13-10-2018 AP3564_05265 febdc20ae473656be45f29f73688cb43 324 Pfam PF00069 Protein kinase domain 27 236 3.7E-16 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AP3564_18750 e93d83a8896c1d18278284a7a35fa774 526 TIGRFAM TIGR02900 spore_V_B: stage V sporulation protein B 6 493 2.5E-171 T 13-10-2018 IPR014249 Sporulation stage V protein B AP3564_18750 e93d83a8896c1d18278284a7a35fa774 526 Pfam PF01943 Polysaccharide biosynthesis protein 6 306 1.2E-55 T 13-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 AP3564_18750 e93d83a8896c1d18278284a7a35fa774 526 PIRSF PIRSF038958 1 515 4.8E-173 T 13-10-2018 IPR024923 Peptidoglycan biosynthesis protein, SpoVB-type AP3564_18750 e93d83a8896c1d18278284a7a35fa774 526 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 360 500 5.2E-17 T 13-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 7 69 6.2E-12 T 13-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 73 136 4.0E-13 T 13-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 SUPERFAMILY SSF55008 3 70 2.62E-20 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 227 793 2.2E-206 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 SUPERFAMILY SSF81665 262 768 1.29E-12 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 Gene3D G3DSA:3.30.70.100 1 71 1.5E-22 T 13-10-2018 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 Pfam PF00122 E1-E2 ATPase 295 475 2.5E-57 T 13-10-2018 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 PRINTS PR00943 Copper-transporting ATPase signature 264 283 1.0E-19 T 13-10-2018 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 PRINTS PR00943 Copper-transporting ATPase signature 479 494 1.0E-19 T 13-10-2018 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 PRINTS PR00943 Copper-transporting ATPase signature 417 431 1.0E-19 T 13-10-2018 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 PRINTS PR00943 Copper-transporting ATPase signature 88 102 1.0E-19 T 13-10-2018 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 PRINTS PR00943 Copper-transporting ATPase signature 668 685 1.0E-19 T 13-10-2018 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 PRINTS PR00943 Copper-transporting ATPase signature 117 137 1.0E-19 T 13-10-2018 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 PRINTS PR00943 Copper-transporting ATPase signature 212 231 1.0E-19 T 13-10-2018 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 Gene3D G3DSA:3.30.70.100 72 149 5.0E-23 T 13-10-2018 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 Gene3D G3DSA:3.40.1110.10 507 623 1.7E-98 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 Pfam PF00403 Heavy-metal-associated domain 75 136 3.2E-19 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 Pfam PF00403 Heavy-metal-associated domain 8 67 7.5E-17 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 SUPERFAMILY SSF55008 71 141 1.96E-22 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 267 770 6.0E-100 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 Pfam PF00702 haloacid dehalogenase-like hydrolase 492 705 7.5E-51 T 13-10-2018 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 616 627 1.1E-27 T 13-10-2018 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 344 358 1.1E-27 T 13-10-2018 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 638 648 1.1E-27 T 13-10-2018 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 714 726 1.1E-27 T 13-10-2018 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 496 510 1.1E-27 T 13-10-2018 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 691 710 1.1E-27 T 13-10-2018 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 ProSitePatterns PS01047 Heavy-metal-associated domain. 11 39 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 Gene3D G3DSA:2.70.150.20 287 399 2.4E-43 T 13-10-2018 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 SUPERFAMILY SSF81653 298 394 1.7E-29 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 209 794 6.9E-196 T 13-10-2018 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 498 504 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 PRINTS PR00942 Copper-transporting ATPase 1 signature 6 31 1.8E-11 T 13-10-2018 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 PRINTS PR00942 Copper-transporting ATPase 1 signature 190 210 1.8E-11 T 13-10-2018 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 PRINTS PR00942 Copper-transporting ATPase 1 signature 210 235 1.8E-11 T 13-10-2018 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 ProSitePatterns PS01047 Heavy-metal-associated domain. 78 107 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 Gene3D G3DSA:3.40.50.1000 477 743 1.7E-98 T 13-10-2018 IPR023214 HAD superfamily AP3564_10695 935d336dcaa14d442599d8f3b129b4c1 798 SUPERFAMILY SSF56784 495 791 2.32E-66 T 13-10-2018 IPR036412 HAD-like superfamily AP3564_09930 01f5e52d78830ad7ff8c2bbbb17d6b04 177 Pfam PF10949 Protein of unknown function (DUF2777) 7 174 1.4E-44 T 13-10-2018 IPR024488 Protein of unknown function DUF2777 AP3564_09930 01f5e52d78830ad7ff8c2bbbb17d6b04 177 ProDom PD106196 YISN IG BH1722 8 169 2.0E-17 T 13-10-2018 IPR024488 Protein of unknown function DUF2777 AP3564_01180 cf01cd3b4bdb49befe0e0a9200e95197 238 Gene3D G3DSA:3.30.70.2660 1 220 8.8E-97 T 13-10-2018 AP3564_01180 cf01cd3b4bdb49befe0e0a9200e95197 238 Pfam PF09704 CRISPR-associated protein (Cas_Cas5) 5 198 1.2E-46 T 13-10-2018 IPR021124 CRISPR-associated protein, Cas5 GO:0043571 AP3564_01180 cf01cd3b4bdb49befe0e0a9200e95197 238 TIGRFAM TIGR02593 CRISPR_cas5: CRISPR-associated protein Cas5 5 48 2.0E-13 T 13-10-2018 IPR013422 CRISPR-associated protein Cas5, N-terminal AP3564_01180 cf01cd3b4bdb49befe0e0a9200e95197 238 TIGRFAM TIGR01876 cas_Cas5d: CRISPR-associated protein Cas5, subtype I-C/DVULG 7 205 7.1E-90 T 13-10-2018 IPR010155 CRISPR pre-crRNA endoribonuclease Cas5d GO:0004519|GO:0051607 AP3564_01180 cf01cd3b4bdb49befe0e0a9200e95197 238 PIRSF PIRSF029950 1 217 1.2E-70 T 13-10-2018 IPR010155 CRISPR pre-crRNA endoribonuclease Cas5d GO:0004519|GO:0051607 AP3564_07415 18c617daf15fc11e2552d7e2191c6646 808 Gene3D G3DSA:3.90.1310.20 69 525 1.1E-219 T 13-10-2018 AP3564_07415 18c617daf15fc11e2552d7e2191c6646 808 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 85 624 3.6E-188 T 13-10-2018 AP3564_07415 18c617daf15fc11e2552d7e2191c6646 808 Pfam PF00912 Transglycosylase 77 249 6.9E-68 T 13-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AP3564_07415 18c617daf15fc11e2552d7e2191c6646 808 SUPERFAMILY SSF56601 231 650 1.94E-114 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AP3564_07415 18c617daf15fc11e2552d7e2191c6646 808 Gene3D G3DSA:1.10.3810.10 85 276 1.1E-219 T 13-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AP3564_07415 18c617daf15fc11e2552d7e2191c6646 808 SUPERFAMILY SSF53955 63 272 8.72E-77 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily AP3564_07415 18c617daf15fc11e2552d7e2191c6646 808 Pfam PF00905 Penicillin binding protein transpeptidase domain 341 619 1.2E-45 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AP3564_07415 18c617daf15fc11e2552d7e2191c6646 808 Gene3D G3DSA:3.40.710.10 314 635 1.1E-219 T 13-10-2018 AP3564_05655 03a38b0d56851e113cce1cf768861c6d 177 ProSitePatterns PS01014 Transcription termination factor nusG signature. 160 169 - T 13-10-2018 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site AP3564_05655 03a38b0d56851e113cce1cf768861c6d 177 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 5 176 3.8E-68 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AP3564_05655 03a38b0d56851e113cce1cf768861c6d 177 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 2 177 30.015 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AP3564_05655 03a38b0d56851e113cce1cf768861c6d 177 Pfam PF00467 KOW motif 128 158 8.3E-7 T 13-10-2018 IPR005824 KOW AP3564_05655 03a38b0d56851e113cce1cf768861c6d 177 SUPERFAMILY SSF82679 2 114 1.57E-41 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AP3564_05655 03a38b0d56851e113cce1cf768861c6d 177 SUPERFAMILY SSF50104 121 177 8.27E-19 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily AP3564_05655 03a38b0d56851e113cce1cf768861c6d 177 PRINTS PR00338 Transcription termination factor NUSG signature 57 69 1.0E-21 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AP3564_05655 03a38b0d56851e113cce1cf768861c6d 177 PRINTS PR00338 Transcription termination factor NUSG signature 135 150 1.0E-21 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AP3564_05655 03a38b0d56851e113cce1cf768861c6d 177 PRINTS PR00338 Transcription termination factor NUSG signature 153 169 1.0E-21 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AP3564_05655 03a38b0d56851e113cce1cf768861c6d 177 Gene3D G3DSA:3.30.70.940 1 118 1.5E-46 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AP3564_05655 03a38b0d56851e113cce1cf768861c6d 177 SMART SM00738 2 113 8.3E-55 T 13-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AP3564_05655 03a38b0d56851e113cce1cf768861c6d 177 Gene3D G3DSA:2.30.30.30 119 177 2.6E-25 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 AP3564_05655 03a38b0d56851e113cce1cf768861c6d 177 SMART SM00739 123 150 2.2E-5 T 13-10-2018 IPR005824 KOW AP3564_05655 03a38b0d56851e113cce1cf768861c6d 177 Pfam PF02357 Transcription termination factor nusG 3 109 9.3E-30 T 13-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AP3564_16520 73d247d2ef08d9e826b0dbf7e6287b1f 211 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 211 30.113 T 13-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AP3564_16520 73d247d2ef08d9e826b0dbf7e6287b1f 211 Gene3D G3DSA:3.40.50.2020 1 209 6.7E-63 T 13-10-2018 AP3564_16520 73d247d2ef08d9e826b0dbf7e6287b1f 211 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 7 176 1.1E-49 T 13-10-2018 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AP3564_16520 73d247d2ef08d9e826b0dbf7e6287b1f 211 Pfam PF00156 Phosphoribosyl transferase domain 44 150 6.9E-18 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AP3564_16520 73d247d2ef08d9e826b0dbf7e6287b1f 211 SUPERFAMILY SSF53271 7 205 3.8E-54 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like AP3564_10850 c67fed632dc29c6b37b8ca3f6be7e189 1081 SMART SM00490 669 758 3.3E-7 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_10850 c67fed632dc29c6b37b8ca3f6be7e189 1081 Pfam PF04851 Type III restriction enzyme, res subunit 369 552 9.2E-37 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AP3564_10850 c67fed632dc29c6b37b8ca3f6be7e189 1081 Pfam PF00271 Helicase conserved C-terminal domain 646 756 4.1E-10 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_10850 c67fed632dc29c6b37b8ca3f6be7e189 1081 Pfam PF08463 EcoEI R protein C-terminal 909 1072 4.5E-38 T 13-10-2018 IPR013670 EcoEI R protein C-terminal domain GO:0003677|GO:0003824|GO:0006304 AP3564_10850 c67fed632dc29c6b37b8ca3f6be7e189 1081 Gene3D G3DSA:3.40.50.300 566 790 8.7E-54 T 13-10-2018 AP3564_10850 c67fed632dc29c6b37b8ca3f6be7e189 1081 SMART SM00487 367 579 3.1E-20 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AP3564_10850 c67fed632dc29c6b37b8ca3f6be7e189 1081 Gene3D G3DSA:3.40.50.300 353 565 9.1E-57 T 13-10-2018 AP3564_10850 c67fed632dc29c6b37b8ca3f6be7e189 1081 SUPERFAMILY SSF52540 384 759 1.23E-33 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_10850 c67fed632dc29c6b37b8ca3f6be7e189 1081 Gene3D G3DSA:3.90.1570.30 174 352 2.0E-14 T 13-10-2018 AP3564_17365 ad09dee9b0ff2d3f4aafa90b7cf970cf 165 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 5 161 36.652 T 13-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AP3564_17365 ad09dee9b0ff2d3f4aafa90b7cf970cf 165 Gene3D G3DSA:3.90.80.10 1 165 1.3E-65 T 13-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AP3564_17365 ad09dee9b0ff2d3f4aafa90b7cf970cf 165 SUPERFAMILY SSF50324 3 162 3.14E-63 T 13-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AP3564_17365 ad09dee9b0ff2d3f4aafa90b7cf970cf 165 Pfam PF00719 Inorganic pyrophosphatase 10 161 5.2E-57 T 13-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AP3564_17365 ad09dee9b0ff2d3f4aafa90b7cf970cf 165 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 56 62 - T 13-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AP3564_09705 b13b91932f4cfcbafa3fcfa858e6eb9b 184 SUPERFAMILY SSF55144 4 184 9.42E-38 T 13-10-2018 IPR009097 Cyclic phosphodiesterase AP3564_09705 b13b91932f4cfcbafa3fcfa858e6eb9b 184 Gene3D G3DSA:3.90.1140.10 4 183 2.5E-39 T 13-10-2018 AP3564_09705 b13b91932f4cfcbafa3fcfa858e6eb9b 184 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 3 182 21.421 T 13-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 AP3564_09705 b13b91932f4cfcbafa3fcfa858e6eb9b 184 Pfam PF13563 2'-5' RNA ligase superfamily 38 166 1.9E-13 T 13-10-2018 AP3564_09705 b13b91932f4cfcbafa3fcfa858e6eb9b 184 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 4 182 5.1E-44 T 13-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 AP3564_02870 e8b867a3e0746cd7238020c3d0199a5f 406 Pfam PF00175 Oxidoreductase NAD-binding domain 271 373 2.9E-19 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AP3564_02870 e8b867a3e0746cd7238020c3d0199a5f 406 SUPERFAMILY SSF46458 1 143 1.35E-41 T 13-10-2018 IPR009050 Globin-like superfamily AP3564_02870 e8b867a3e0746cd7238020c3d0199a5f 406 PRINTS PR00410 Phenol hydroxylase reductase family signature 270 289 4.2E-9 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AP3564_02870 e8b867a3e0746cd7238020c3d0199a5f 406 PRINTS PR00410 Phenol hydroxylase reductase family signature 360 368 4.2E-9 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AP3564_02870 e8b867a3e0746cd7238020c3d0199a5f 406 PRINTS PR00410 Phenol hydroxylase reductase family signature 185 197 4.2E-9 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AP3564_02870 e8b867a3e0746cd7238020c3d0199a5f 406 SUPERFAMILY SSF52343 250 390 5.5E-37 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AP3564_02870 e8b867a3e0746cd7238020c3d0199a5f 406 Hamap MF_01252 Flavohemoprotein [hmp]. 1 398 54.367 T 13-10-2018 IPR023950 Flavohemoprotein GO:0008941|GO:0019825|GO:0020037|GO:0051409|GO:0055114|GO:0071949 AP3564_02870 e8b867a3e0746cd7238020c3d0199a5f 406 Pfam PF00970 Oxidoreductase FAD-binding domain 158 259 2.6E-10 T 13-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 AP3564_02870 e8b867a3e0746cd7238020c3d0199a5f 406 SUPERFAMILY SSF63380 151 261 1.11E-30 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AP3564_02870 e8b867a3e0746cd7238020c3d0199a5f 406 Gene3D G3DSA:1.10.490.10 1 145 4.2E-58 T 13-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 AP3564_02870 e8b867a3e0746cd7238020c3d0199a5f 406 Pfam PF00042 Globin 7 102 8.6E-11 T 13-10-2018 IPR000971 Globin GO:0020037 AP3564_02870 e8b867a3e0746cd7238020c3d0199a5f 406 Gene3D G3DSA:3.40.50.80 261 400 3.0E-37 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AP3564_02870 e8b867a3e0746cd7238020c3d0199a5f 406 Gene3D G3DSA:2.40.30.10 152 260 9.8E-38 T 13-10-2018 AP3564_09685 c0a6a2aa9e22d292953092fc53a54bb7 464 Pfam PF01546 Peptidase family M20/M25/M40 84 460 1.9E-33 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 AP3564_09685 c0a6a2aa9e22d292953092fc53a54bb7 464 Gene3D G3DSA:3.40.630.10 13 462 3.9E-175 T 13-10-2018 AP3564_09685 c0a6a2aa9e22d292953092fc53a54bb7 464 TIGRFAM TIGR01887 dipeptidaselike: putative dipeptidase 11 459 1.1E-175 T 13-10-2018 IPR010964 Peptidase M20A, peptidase V-related GO:0008270|GO:0016805 AP3564_09685 c0a6a2aa9e22d292953092fc53a54bb7 464 SUPERFAMILY SSF55031 184 369 3.35E-49 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain AP3564_09685 c0a6a2aa9e22d292953092fc53a54bb7 464 SUPERFAMILY SSF53187 2 463 2.06E-66 T 13-10-2018 AP3564_09685 c0a6a2aa9e22d292953092fc53a54bb7 464 Gene3D G3DSA:3.30.70.360 204 292 3.9E-175 T 13-10-2018 AP3564_09685 c0a6a2aa9e22d292953092fc53a54bb7 464 Gene3D G3DSA:3.30.70.360 184 378 3.9E-175 T 13-10-2018 AP3564_18560 ba812f224e8808322740cc528e0314ed 98 SMART SM01103 3 86 1.3E-42 T 13-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 AP3564_18560 ba812f224e8808322740cc528e0314ed 98 Pfam PF01985 CRS1 / YhbY (CRM) domain 3 86 3.4E-22 T 13-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 AP3564_18560 ba812f224e8808322740cc528e0314ed 98 TIGRFAM TIGR00253 RNA_bind_YhbY: putative RNA-binding protein, YhbY family 3 98 7.4E-40 T 13-10-2018 IPR017924 RNA-binding protein YhbY GO:0003723 AP3564_18560 ba812f224e8808322740cc528e0314ed 98 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 9 97 1.0E-31 T 13-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 AP3564_18560 ba812f224e8808322740cc528e0314ed 98 Gene3D G3DSA:3.30.110.60 2 98 2.6E-37 T 13-10-2018 IPR035920 YhbY-like superfamily AP3564_18560 ba812f224e8808322740cc528e0314ed 98 SUPERFAMILY SSF75471 1 96 2.88E-32 T 13-10-2018 IPR035920 YhbY-like superfamily AP3564_02275 a08d7d40ec63884628b50b316aa38a43 587 Gene3D G3DSA:3.40.50.1220 205 380 8.7E-31 T 13-10-2018 AP3564_02275 a08d7d40ec63884628b50b316aa38a43 587 Gene3D G3DSA:3.40.50.970 1 192 1.1E-52 T 13-10-2018 AP3564_02275 a08d7d40ec63884628b50b316aa38a43 587 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 210 342 2.7E-12 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AP3564_02275 a08d7d40ec63884628b50b316aa38a43 587 SUPERFAMILY SSF52518 386 571 6.1E-36 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold AP3564_02275 a08d7d40ec63884628b50b316aa38a43 587 SUPERFAMILY SSF52518 3 198 2.55E-36 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold AP3564_02275 a08d7d40ec63884628b50b316aa38a43 587 Gene3D G3DSA:3.40.50.970 381 583 2.0E-41 T 13-10-2018 AP3564_02275 a08d7d40ec63884628b50b316aa38a43 587 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 416 567 7.6E-23 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AP3564_02275 a08d7d40ec63884628b50b316aa38a43 587 SUPERFAMILY SSF52467 172 376 3.02E-25 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AP3564_02275 a08d7d40ec63884628b50b316aa38a43 587 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 444 463 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AP3564_02275 a08d7d40ec63884628b50b316aa38a43 587 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 6 188 5.7E-42 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AP3564_10075 e19aa7bcd76bf79b29fbe7f313e08e85 60 Pfam PF11151 Protein of unknown function (DUF2929) 1 55 2.1E-22 T 13-10-2018 IPR021324 Protein of unknown function DUF2929 AP3564_05710 9da0137ec6e1ccda36303da92bf0e768 692 SUPERFAMILY SSF50447 263 402 6.52E-37 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AP3564_05710 9da0137ec6e1ccda36303da92bf0e768 692 Gene3D G3DSA:3.30.70.240 602 672 9.9E-99 T 13-10-2018 AP3564_05710 9da0137ec6e1ccda36303da92bf0e768 692 Gene3D G3DSA:2.40.30.10 293 403 8.0E-48 T 13-10-2018 AP3564_05710 9da0137ec6e1ccda36303da92bf0e768 692 Pfam PF00679 Elongation factor G C-terminus 598 684 5.3E-34 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like AP3564_05710 9da0137ec6e1ccda36303da92bf0e768 692 Pfam PF03144 Elongation factor Tu domain 2 322 389 1.9E-15 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AP3564_05710 9da0137ec6e1ccda36303da92bf0e768 692 SUPERFAMILY SSF54211 477 597 6.07E-45 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AP3564_05710 9da0137ec6e1ccda36303da92bf0e768 692 Pfam PF03764 Elongation factor G, domain IV 477 595 4.0E-48 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AP3564_05710 9da0137ec6e1ccda36303da92bf0e768 692 Pfam PF00009 Elongation factor Tu GTP binding domain 9 280 1.1E-70 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AP3564_05710 9da0137ec6e1ccda36303da92bf0e768 692 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 180 1.6E-45 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AP3564_05710 9da0137ec6e1ccda36303da92bf0e768 692 SUPERFAMILY SSF54980 400 478 2.16E-26 T 13-10-2018 IPR035647 EF-G domain III/V-like AP3564_05710 9da0137ec6e1ccda36303da92bf0e768 692 Gene3D G3DSA:3.30.70.870 404 481 2.9E-33 T 13-10-2018 AP3564_05710 9da0137ec6e1ccda36303da92bf0e768 692 Gene3D G3DSA:3.40.50.300 2 292 1.1E-115 T 13-10-2018 AP3564_05710 9da0137ec6e1ccda36303da92bf0e768 692 Hamap MF_00054_B Elongation factor G [fusA]. 6 689 115.554 T 13-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AP3564_05710 9da0137ec6e1ccda36303da92bf0e768 692 Pfam PF14492 Elongation Factor G, domain II 402 475 2.9E-36 T 13-10-2018 AP3564_05710 9da0137ec6e1ccda36303da92bf0e768 692 SMART SM00838 598 685 2.5E-62 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like AP3564_05710 9da0137ec6e1ccda36303da92bf0e768 692 SUPERFAMILY SSF54980 601 688 5.28E-33 T 13-10-2018 IPR035647 EF-G domain III/V-like AP3564_05710 9da0137ec6e1ccda36303da92bf0e768 692 SMART SM00889 478 596 2.6E-75 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AP3564_05710 9da0137ec6e1ccda36303da92bf0e768 692 Gene3D G3DSA:3.30.230.10 482 685 9.9E-99 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AP3564_05710 9da0137ec6e1ccda36303da92bf0e768 692 PRINTS PR00315 GTP-binding elongation factor signature 78 88 4.7E-17 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AP3564_05710 9da0137ec6e1ccda36303da92bf0e768 692 PRINTS PR00315 GTP-binding elongation factor signature 94 105 4.7E-17 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AP3564_05710 9da0137ec6e1ccda36303da92bf0e768 692 PRINTS PR00315 GTP-binding elongation factor signature 130 139 4.7E-17 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AP3564_05710 9da0137ec6e1ccda36303da92bf0e768 692 PRINTS PR00315 GTP-binding elongation factor signature 12 25 4.7E-17 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AP3564_05710 9da0137ec6e1ccda36303da92bf0e768 692 PRINTS PR00315 GTP-binding elongation factor signature 58 66 4.7E-17 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AP3564_05710 9da0137ec6e1ccda36303da92bf0e768 692 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 690 0.0 T 13-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AP3564_05710 9da0137ec6e1ccda36303da92bf0e768 692 SUPERFAMILY SSF52540 6 280 1.2E-113 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_05710 9da0137ec6e1ccda36303da92bf0e768 692 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site AP3564_12545 7c2bc6681009ff9680d07199d0c5ebcc 241 Hamap MF_01968 NAD-dependent protein deacetylase [cobB]. 6 236 58.316 T 13-10-2018 IPR028628 Sirtuin, class U GO:0034979|GO:0051287 AP3564_12545 7c2bc6681009ff9680d07199d0c5ebcc 241 Gene3D G3DSA:3.30.1600.10 31 161 1.3E-77 T 13-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily AP3564_12545 7c2bc6681009ff9680d07199d0c5ebcc 241 Gene3D G3DSA:3.40.50.1220 13 235 1.3E-77 T 13-10-2018 AP3564_12545 7c2bc6681009ff9680d07199d0c5ebcc 241 SUPERFAMILY SSF52467 4 239 4.21E-78 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AP3564_12545 7c2bc6681009ff9680d07199d0c5ebcc 241 Pfam PF02146 Sir2 family 22 191 6.5E-50 T 13-10-2018 IPR003000 Sirtuin family GO:0070403 AP3564_01275 dfd77c1465be84cb11d24994428d4c13 338 Gene3D G3DSA:1.10.260.40 1 65 1.4E-20 T 13-10-2018 AP3564_01275 dfd77c1465be84cb11d24994428d4c13 338 ProSitePatterns PS00356 LacI-type HTH domain signature. 11 29 - T 13-10-2018 AP3564_01275 dfd77c1465be84cb11d24994428d4c13 338 SMART SM00354 8 78 8.8E-27 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AP3564_01275 dfd77c1465be84cb11d24994428d4c13 338 Pfam PF13377 Periplasmic binding protein-like domain 177 338 8.5E-38 T 13-10-2018 AP3564_01275 dfd77c1465be84cb11d24994428d4c13 338 Gene3D G3DSA:3.40.50.2300 169 335 5.5E-80 T 13-10-2018 AP3564_01275 dfd77c1465be84cb11d24994428d4c13 338 Gene3D G3DSA:3.40.50.2300 69 330 5.5E-80 T 13-10-2018 AP3564_01275 dfd77c1465be84cb11d24994428d4c13 338 SUPERFAMILY SSF53822 68 337 2.21E-77 T 13-10-2018 IPR028082 Periplasmic binding protein-like I AP3564_01275 dfd77c1465be84cb11d24994428d4c13 338 Pfam PF00356 Bacterial regulatory proteins, lacI family 10 53 2.2E-15 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AP3564_01275 dfd77c1465be84cb11d24994428d4c13 338 SUPERFAMILY SSF47413 8 66 4.73E-17 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AP3564_08495 3984feee53866611b8d6303a9043dd3a 242 SUPERFAMILY SSF161098 16 215 3.01E-41 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_08495 3984feee53866611b8d6303a9043dd3a 242 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 14 124 5.7E-22 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AP3564_08495 3984feee53866611b8d6303a9043dd3a 242 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 230 1.8E-16 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AP3564_08495 3984feee53866611b8d6303a9043dd3a 242 Gene3D G3DSA:1.10.3720.10 3 233 8.1E-53 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_07675 397bf1bd318239d46621bb8e3a7d0801 140 TIGRFAM TIGR03826 YvyF: flagellar operon protein TIGR03826 3 136 2.0E-54 T 13-10-2018 IPR022258 Flagellar operon protein YvyF AP3564_10790 aa5ffd832ee5e1ed4b43b4f53f797c7d 190 Pfam PF01965 DJ-1/PfpI family 3 180 5.3E-37 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 AP3564_10790 aa5ffd832ee5e1ed4b43b4f53f797c7d 190 Gene3D G3DSA:3.40.50.880 1 187 1.0E-43 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AP3564_10790 aa5ffd832ee5e1ed4b43b4f53f797c7d 190 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 4 183 1.3E-41 T 13-10-2018 IPR006286 Deglycase PfpI AP3564_10790 aa5ffd832ee5e1ed4b43b4f53f797c7d 190 SUPERFAMILY SSF52317 1 182 8.58E-45 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AP3564_00430 2f9102ffbab7578a208d8c0da2e64ccb 425 Gene3D G3DSA:2.160.20.10 25 342 7.4E-24 T 13-10-2018 IPR012334 Pectin lyase fold AP3564_00430 2f9102ffbab7578a208d8c0da2e64ccb 425 TIGRFAM TIGR03804 para_beta_helix: parallel beta-helix repeat 261 304 1.9E-7 T 13-10-2018 IPR022441 Parallel beta-helix repeat-2 Reactome: R-HSA-8951664|Reactome: R-HSA-983168 AP3564_00430 2f9102ffbab7578a208d8c0da2e64ccb 425 TIGRFAM TIGR03804 para_beta_helix: parallel beta-helix repeat 239 280 5.3E-7 T 13-10-2018 IPR022441 Parallel beta-helix repeat-2 Reactome: R-HSA-8951664|Reactome: R-HSA-983168 AP3564_00430 2f9102ffbab7578a208d8c0da2e64ccb 425 SUPERFAMILY SSF51126 23 362 2.58E-39 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor AP3564_00430 2f9102ffbab7578a208d8c0da2e64ccb 425 SMART SM00710 289 313 2100.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat AP3564_00430 2f9102ffbab7578a208d8c0da2e64ccb 425 SMART SM00710 196 217 1900.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat AP3564_00430 2f9102ffbab7578a208d8c0da2e64ccb 425 SMART SM00710 174 195 4400.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat AP3564_00430 2f9102ffbab7578a208d8c0da2e64ccb 425 SMART SM00710 267 288 610.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat AP3564_00430 2f9102ffbab7578a208d8c0da2e64ccb 425 SMART SM00710 80 106 1300.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat AP3564_00430 2f9102ffbab7578a208d8c0da2e64ccb 425 SMART SM00710 152 173 120.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat AP3564_00430 2f9102ffbab7578a208d8c0da2e64ccb 425 SMART SM00710 245 266 1200.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat AP3564_00430 2f9102ffbab7578a208d8c0da2e64ccb 425 SMART SM00710 218 239 810.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat AP3564_00430 2f9102ffbab7578a208d8c0da2e64ccb 425 Pfam PF05048 Periplasmic copper-binding protein (NosD) 132 342 6.8E-34 T 13-10-2018 IPR007742 Periplasmic copper-binding protein NosD, beta helix domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 AP3564_14975 86bfd6cd6eff1cfd4809cf4b41328fa9 486 Pfam PF00171 Aldehyde dehydrogenase family 16 475 2.5E-155 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AP3564_14975 86bfd6cd6eff1cfd4809cf4b41328fa9 486 SUPERFAMILY SSF53720 8 478 7.85E-145 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AP3564_14975 86bfd6cd6eff1cfd4809cf4b41328fa9 486 Gene3D G3DSA:3.40.605.10 13 256 1.3E-154 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AP3564_14975 86bfd6cd6eff1cfd4809cf4b41328fa9 486 Gene3D G3DSA:3.40.309.10 257 437 1.3E-154 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AP3564_14975 86bfd6cd6eff1cfd4809cf4b41328fa9 486 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 253 260 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AP3564_15490 e96a27d3ddecef09447c3ed3f2601760 155 Pfam PF01609 Transposase DDE domain 28 84 3.6E-7 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_15490 e96a27d3ddecef09447c3ed3f2601760 155 SUPERFAMILY SSF53098 29 81 3.11E-5 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_05835 aca8376cbd9bc8efe55a4854ebb2d9ad 248 Hamap MF_01974 Methionine aminopeptidase [map]. 2 248 43.829 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AP3564_05835 aca8376cbd9bc8efe55a4854ebb2d9ad 248 SUPERFAMILY SSF55920 1 246 4.45E-94 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like AP3564_05835 aca8376cbd9bc8efe55a4854ebb2d9ad 248 Pfam PF00557 Metallopeptidase family M24 12 239 1.0E-57 T 13-10-2018 IPR000994 Peptidase M24 AP3564_05835 aca8376cbd9bc8efe55a4854ebb2d9ad 248 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 165 183 - T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AP3564_05835 aca8376cbd9bc8efe55a4854ebb2d9ad 248 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 2 247 1.0E-104 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AP3564_05835 aca8376cbd9bc8efe55a4854ebb2d9ad 248 Gene3D G3DSA:3.90.230.10 1 248 4.6E-112 T 13-10-2018 AP3564_05835 aca8376cbd9bc8efe55a4854ebb2d9ad 248 PRINTS PR00599 Methionine aminopeptidase-1 signature 190 202 6.4E-24 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AP3564_05835 aca8376cbd9bc8efe55a4854ebb2d9ad 248 PRINTS PR00599 Methionine aminopeptidase-1 signature 159 171 6.4E-24 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AP3564_05835 aca8376cbd9bc8efe55a4854ebb2d9ad 248 PRINTS PR00599 Methionine aminopeptidase-1 signature 67 80 6.4E-24 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AP3564_05835 aca8376cbd9bc8efe55a4854ebb2d9ad 248 PRINTS PR00599 Methionine aminopeptidase-1 signature 89 105 6.4E-24 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AP3564_08230 feccb417940c496f34a3c3ad584e07da 236 SUPERFAMILY SSF52540 24 202 1.08E-23 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_08230 feccb417940c496f34a3c3ad584e07da 236 Pfam PF13476 AAA domain 27 77 1.2E-10 T 13-10-2018 IPR038729 Rad50/SbcC-type AAA domain AP3564_08230 feccb417940c496f34a3c3ad584e07da 236 Gene3D G3DSA:3.40.50.300 104 209 3.5E-12 T 13-10-2018 AP3564_08230 feccb417940c496f34a3c3ad584e07da 236 Gene3D G3DSA:3.40.50.300 1 88 4.3E-10 T 13-10-2018 AP3564_08230 feccb417940c496f34a3c3ad584e07da 236 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 144 190 2.4E-11 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AP3564_08230 feccb417940c496f34a3c3ad584e07da 236 SMART SM00382 35 219 1.7E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_13595 faa7b5ac8083737643d44d30302e56de 199 SUPERFAMILY SSF55469 3 198 5.5E-73 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AP3564_13595 faa7b5ac8083737643d44d30302e56de 199 Gene3D G3DSA:3.40.109.10 2 199 1.4E-91 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AP3564_13595 faa7b5ac8083737643d44d30302e56de 199 Pfam PF00881 Nitroreductase family 10 178 1.0E-16 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 AP3564_16620 172e07f5d008ba73bb6a9ab88a95302e 83 Gene3D G3DSA:2.30.30.240 1 77 2.4E-12 T 13-10-2018 AP3564_16620 172e07f5d008ba73bb6a9ab88a95302e 83 Pfam PF05239 PRC-barrel domain 2 78 1.2E-15 T 13-10-2018 IPR027275 PRC-barrel domain AP3564_16620 172e07f5d008ba73bb6a9ab88a95302e 83 TIGRFAM TIGR02888 spore_YlmC_YmxH: sporulation protein, YlmC/YmxH family 4 75 1.3E-27 T 13-10-2018 IPR014238 Sporulation protein YlmC/YmxH AP3564_16620 172e07f5d008ba73bb6a9ab88a95302e 83 SUPERFAMILY SSF50346 1 74 9.22E-16 T 13-10-2018 IPR011033 PRC-barrel-like superfamily AP3564_07885 b5584e75bea5b1176e110dd2896eb5ec 344 SMART SM00062 45 251 7.5E-4 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AP3564_07885 b5584e75bea5b1176e110dd2896eb5ec 344 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 44 337 5.7E-68 T 13-10-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 AP3564_07885 b5584e75bea5b1176e110dd2896eb5ec 344 Pfam PF09084 NMT1/THI5 like 61 257 4.7E-22 T 13-10-2018 IPR015168 SsuA/THI5-like AP3564_07885 b5584e75bea5b1176e110dd2896eb5ec 344 SUPERFAMILY SSF53850 41 263 2.84E-48 T 13-10-2018 AP3564_07885 b5584e75bea5b1176e110dd2896eb5ec 344 Gene3D G3DSA:3.40.190.10 136 344 1.1E-35 T 13-10-2018 AP3564_07885 b5584e75bea5b1176e110dd2896eb5ec 344 Gene3D G3DSA:3.40.190.10 37 135 2.1E-11 T 13-10-2018 AP3564_08895 34fb5a75eef0549ee1a4b3ed47d4ebe6 805 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 18 216 1.1E-45 T 13-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AP3564_08895 34fb5a75eef0549ee1a4b3ed47d4ebe6 805 SUPERFAMILY SSF52096 492 802 6.22E-39 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AP3564_08895 34fb5a75eef0549ee1a4b3ed47d4ebe6 805 Gene3D G3DSA:1.10.1040.10 377 447 1.6E-8 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AP3564_08895 34fb5a75eef0549ee1a4b3ed47d4ebe6 805 Pfam PF00378 Enoyl-CoA hydratase/isomerase 501 636 9.2E-11 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AP3564_08895 34fb5a75eef0549ee1a4b3ed47d4ebe6 805 Gene3D G3DSA:3.90.226.10 495 697 3.9E-28 T 13-10-2018 AP3564_08895 34fb5a75eef0549ee1a4b3ed47d4ebe6 805 SUPERFAMILY SSF48179 368 470 1.79E-18 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AP3564_08895 34fb5a75eef0549ee1a4b3ed47d4ebe6 805 SUPERFAMILY SSF51735 15 217 1.21E-41 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_08895 34fb5a75eef0549ee1a4b3ed47d4ebe6 805 Gene3D G3DSA:3.40.50.720 12 219 1.2E-64 T 13-10-2018 AP3564_08895 34fb5a75eef0549ee1a4b3ed47d4ebe6 805 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 386 427 6.0E-6 T 13-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AP3564_08895 34fb5a75eef0549ee1a4b3ed47d4ebe6 805 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 219 317 4.2E-10 T 13-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AP3564_08895 34fb5a75eef0549ee1a4b3ed47d4ebe6 805 Gene3D G3DSA:1.10.1040.10 220 342 8.6E-17 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AP3564_08895 34fb5a75eef0549ee1a4b3ed47d4ebe6 805 SUPERFAMILY SSF48179 217 337 9.35E-22 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AP3564_06615 0612650a76f090fedb579625b12ed79f 100 Pfam PF00682 HMGL-like 5 70 1.8E-10 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 AP3564_06615 0612650a76f090fedb579625b12ed79f 100 Gene3D G3DSA:3.20.20.70 2 83 2.6E-28 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_06615 0612650a76f090fedb579625b12ed79f 100 SUPERFAMILY SSF51569 2 72 5.86E-17 T 13-10-2018 AP3564_13805 528debf33ec401d238a7ad44b71d8c03 287 Pfam PF12833 Helix-turn-helix domain 204 282 1.6E-19 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AP3564_13805 528debf33ec401d238a7ad44b71d8c03 287 Gene3D G3DSA:1.10.10.60 231 286 9.1E-19 T 13-10-2018 AP3564_13805 528debf33ec401d238a7ad44b71d8c03 287 Gene3D G3DSA:1.10.10.60 180 230 1.0E-14 T 13-10-2018 AP3564_13805 528debf33ec401d238a7ad44b71d8c03 287 SUPERFAMILY SSF46689 234 284 1.08E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_13805 528debf33ec401d238a7ad44b71d8c03 287 SMART SM00342 198 281 3.5E-27 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AP3564_13805 528debf33ec401d238a7ad44b71d8c03 287 SUPERFAMILY SSF46689 184 231 4.39E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_13805 528debf33ec401d238a7ad44b71d8c03 287 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 265 281 2.9E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AP3564_13805 528debf33ec401d238a7ad44b71d8c03 287 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 250 265 2.9E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AP3564_13805 528debf33ec401d238a7ad44b71d8c03 287 SUPERFAMILY SSF51215 1 171 1.11E-23 T 13-10-2018 IPR037923 Transcription regulator HTH-like AP3564_16570 3d9449ff0fbfbbcf77dcce48e30a9407 304 SUPERFAMILY SSF55120 73 301 4.93E-80 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AP3564_16570 3d9449ff0fbfbbcf77dcce48e30a9407 304 Gene3D G3DSA:3.10.290.10 3 71 1.8E-19 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AP3564_16570 3d9449ff0fbfbbcf77dcce48e30a9407 304 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 134 148 - T 13-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 AP3564_16570 3d9449ff0fbfbbcf77dcce48e30a9407 304 Pfam PF01479 S4 domain 15 61 1.0E-8 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_16570 3d9449ff0fbfbbcf77dcce48e30a9407 304 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 10 301 1.4E-105 T 13-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 AP3564_16570 3d9449ff0fbfbbcf77dcce48e30a9407 304 SUPERFAMILY SSF55174 15 101 2.86E-13 T 13-10-2018 AP3564_16570 3d9449ff0fbfbbcf77dcce48e30a9407 304 SMART SM00363 15 79 1.6E-8 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_16570 3d9449ff0fbfbbcf77dcce48e30a9407 304 Gene3D G3DSA:3.30.2350.10 81 304 5.7E-78 T 13-10-2018 AP3564_16570 3d9449ff0fbfbbcf77dcce48e30a9407 304 Pfam PF00849 RNA pseudouridylate synthase 88 242 1.7E-36 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AP3564_12385 967efd0998d42c0cdd1fa1a004caadae 158 SMART SM00344 12 118 1.6E-42 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AP3564_12385 967efd0998d42c0cdd1fa1a004caadae 158 SUPERFAMILY SSF54909 73 151 8.71E-15 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel AP3564_12385 967efd0998d42c0cdd1fa1a004caadae 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 12 28 1.7E-14 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AP3564_12385 967efd0998d42c0cdd1fa1a004caadae 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 39 1.7E-14 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AP3564_12385 967efd0998d42c0cdd1fa1a004caadae 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 39 58 1.7E-14 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AP3564_12385 967efd0998d42c0cdd1fa1a004caadae 158 Pfam PF13404 AsnC-type helix-turn-helix domain 12 52 5.0E-14 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AP3564_12385 967efd0998d42c0cdd1fa1a004caadae 158 Pfam PF01037 Lrp/AsnC ligand binding domain 79 148 1.4E-12 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AP3564_12385 967efd0998d42c0cdd1fa1a004caadae 158 ProSitePatterns PS00519 AsnC-type HTH domain signature. 30 56 - T 13-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site AP3564_12385 967efd0998d42c0cdd1fa1a004caadae 158 SUPERFAMILY SSF46785 12 71 1.65E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_12385 967efd0998d42c0cdd1fa1a004caadae 158 Gene3D G3DSA:1.10.10.10 10 63 1.8E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_12385 967efd0998d42c0cdd1fa1a004caadae 158 Gene3D G3DSA:3.30.70.920 64 158 9.6E-17 T 13-10-2018 AP3564_07480 2ef6a95358b8d07c69901b08cad8b375 295 Gene3D G3DSA:1.10.10.60 1 38 4.3E-15 T 13-10-2018 AP3564_07480 2ef6a95358b8d07c69901b08cad8b375 295 Gene3D G3DSA:3.40.50.1360 44 295 9.8E-77 T 13-10-2018 AP3564_07480 2ef6a95358b8d07c69901b08cad8b375 295 Pfam PF04198 Putative sugar-binding domain 49 295 2.3E-70 T 13-10-2018 IPR007324 Sugar-binding domain, putative GO:0030246 AP3564_07480 2ef6a95358b8d07c69901b08cad8b375 295 SUPERFAMILY SSF46689 2 50 2.51E-6 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_07480 2ef6a95358b8d07c69901b08cad8b375 295 SUPERFAMILY SSF100950 48 295 3.28E-69 T 13-10-2018 IPR037171 NagB/RpiA transferase-like AP3564_00910 544fcb675600e6ac336a950d044ce71a 842 Pfam PF08665 PglZ domain 463 636 7.0E-26 T 13-10-2018 IPR013973 PglZ domain AP3564_17915 6db60fe9a74fecf7a47779e1b9b0befa 185 SUPERFAMILY SSF50104 1 62 5.48E-22 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily AP3564_17915 6db60fe9a74fecf7a47779e1b9b0befa 185 Gene3D G3DSA:2.40.50.140 64 127 1.4E-26 T 13-10-2018 AP3564_17915 6db60fe9a74fecf7a47779e1b9b0befa 185 SMART SM01185 67 121 4.3E-26 T 13-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 AP3564_17915 6db60fe9a74fecf7a47779e1b9b0befa 185 SUPERFAMILY SSF50249 65 129 4.46E-21 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_17915 6db60fe9a74fecf7a47779e1b9b0befa 185 Pfam PF01132 Elongation factor P (EF-P) OB domain 68 121 5.9E-22 T 13-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 AP3564_17915 6db60fe9a74fecf7a47779e1b9b0befa 185 Hamap MF_00141 Elongation factor P [efp]. 1 185 51.667 T 13-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 AP3564_17915 6db60fe9a74fecf7a47779e1b9b0befa 185 TIGRFAM TIGR00038 efp: translation elongation factor P 2 185 1.7E-83 T 13-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 AP3564_17915 6db60fe9a74fecf7a47779e1b9b0befa 185 Gene3D G3DSA:2.30.30.30 1 62 6.5E-32 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 AP3564_17915 6db60fe9a74fecf7a47779e1b9b0befa 185 SUPERFAMILY SSF50249 128 185 1.95E-20 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_17915 6db60fe9a74fecf7a47779e1b9b0befa 185 SMART SM00841 129 184 5.6E-37 T 13-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 AP3564_17915 6db60fe9a74fecf7a47779e1b9b0befa 185 PIRSF PIRSF005901 1 185 3.8E-74 T 13-10-2018 IPR020599 Translation elongation factor P/YeiP AP3564_17915 6db60fe9a74fecf7a47779e1b9b0befa 185 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 3 60 7.6E-29 T 13-10-2018 IPR013185 Translation elongation factor, KOW-like AP3564_17915 6db60fe9a74fecf7a47779e1b9b0befa 185 Pfam PF09285 Elongation factor P, C-terminal 129 184 1.7E-28 T 13-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 AP3564_17915 6db60fe9a74fecf7a47779e1b9b0befa 185 ProSitePatterns PS01275 Elongation factor P signature. 150 169 - T 13-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site AP3564_17915 6db60fe9a74fecf7a47779e1b9b0befa 185 Gene3D G3DSA:2.40.50.140 128 185 1.5E-28 T 13-10-2018 AP3564_16130 24f27bb745befa8ddd72243fccacf486 89 Pfam PF01313 Bacterial export proteins, family 3 6 77 2.2E-31 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AP3564_16130 24f27bb745befa8ddd72243fccacf486 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 3.2E-25 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AP3564_16130 24f27bb745befa8ddd72243fccacf486 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 3.2E-25 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AP3564_16130 24f27bb745befa8ddd72243fccacf486 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 3.2E-25 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AP3564_16130 24f27bb745befa8ddd72243fccacf486 89 PIRSF PIRSF004669 1 89 6.3E-35 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AP3564_16130 24f27bb745befa8ddd72243fccacf486 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 87 5.2E-34 T 13-10-2018 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 AP3564_09545 fb1c12aa1616a389eff90b39be32d7c8 80 Gene3D G3DSA:2.40.240.20 1 77 5.8E-35 T 13-10-2018 AP3564_09545 fb1c12aa1616a389eff90b39be32d7c8 80 SUPERFAMILY SSF88697 1 80 5.96E-29 T 13-10-2018 IPR015947 PUA-like superfamily AP3564_09545 fb1c12aa1616a389eff90b39be32d7c8 80 Pfam PF10763 Protein of unknown function (DUF2584) 1 80 1.2E-35 T 13-10-2018 IPR019699 Protein of unknown function DUF2584 AP3564_18920 d51093d5a1a59d1f4a06f28d03fe3c0f 238 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 15 219 21.501 T 13-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 AP3564_18920 d51093d5a1a59d1f4a06f28d03fe3c0f 238 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 15 217 2.0E-37 T 13-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 AP3564_18920 d51093d5a1a59d1f4a06f28d03fe3c0f 238 Gene3D G3DSA:2.160.20.70 108 233 5.0E-37 T 13-10-2018 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 AP3564_18920 d51093d5a1a59d1f4a06f28d03fe3c0f 238 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 115 215 1.6E-31 T 13-10-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 AP3564_18920 d51093d5a1a59d1f4a06f28d03fe3c0f 238 Gene3D G3DSA:3.30.160.540 14 94 3.4E-29 T 13-10-2018 AP3564_18920 d51093d5a1a59d1f4a06f28d03fe3c0f 238 SUPERFAMILY SSF63848 114 218 7.19E-30 T 13-10-2018 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily GO:0000902 AP3564_04785 431e1758f02a84c51992ee4dd157538c 95 Pfam PF01250 Ribosomal protein S6 3 92 1.4E-31 T 13-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_04785 431e1758f02a84c51992ee4dd157538c 95 Gene3D G3DSA:3.30.70.60 1 95 2.7E-36 T 13-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 AP3564_04785 431e1758f02a84c51992ee4dd157538c 95 SUPERFAMILY SSF54995 1 95 1.15E-35 T 13-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_04785 431e1758f02a84c51992ee4dd157538c 95 ProSitePatterns PS01048 Ribosomal protein S6 signature. 44 53 - T 13-10-2018 IPR020815 Ribosomal protein S6, conserved site GO:0003735|GO:0005840|GO:0006412|GO:0019843 AP3564_04785 431e1758f02a84c51992ee4dd157538c 95 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 95 24.198 T 13-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 AP3564_04785 431e1758f02a84c51992ee4dd157538c 95 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 94 1.3E-33 T 13-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_02695 119d7cc9cbda41ee8ad12c1b74635721 495 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 266 273 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AP3564_02695 119d7cc9cbda41ee8ad12c1b74635721 495 Gene3D G3DSA:3.40.605.10 25 488 2.3E-206 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AP3564_02695 119d7cc9cbda41ee8ad12c1b74635721 495 Pfam PF00171 Aldehyde dehydrogenase family 29 490 9.7E-194 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AP3564_02695 119d7cc9cbda41ee8ad12c1b74635721 495 SUPERFAMILY SSF53720 21 492 1.15E-187 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AP3564_02695 119d7cc9cbda41ee8ad12c1b74635721 495 Gene3D G3DSA:3.40.309.10 271 460 2.3E-206 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AP3564_16370 53455f41eeeabd0198f881a7c173cbd4 313 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 3 290 7.2E-117 T 13-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 AP3564_16370 53455f41eeeabd0198f881a7c173cbd4 313 Gene3D G3DSA:3.40.366.10 7 286 3.9E-98 T 13-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 AP3564_16370 53455f41eeeabd0198f881a7c173cbd4 313 Gene3D G3DSA:3.30.70.250 126 199 3.9E-98 T 13-10-2018 AP3564_16370 53455f41eeeabd0198f881a7c173cbd4 313 PIRSF PIRSF000446 1 311 2.7E-121 T 13-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 AP3564_16370 53455f41eeeabd0198f881a7c173cbd4 313 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 7 306 8.3E-37 T 13-10-2018 IPR020801 Polyketide synthase, acyl transferase domain AP3564_16370 53455f41eeeabd0198f881a7c173cbd4 313 SUPERFAMILY SSF55048 128 193 7.06E-16 T 13-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding AP3564_16370 53455f41eeeabd0198f881a7c173cbd4 313 Pfam PF00698 Acyl transferase domain 7 291 1.5E-38 T 13-10-2018 IPR014043 Acyl transferase AP3564_16370 53455f41eeeabd0198f881a7c173cbd4 313 SUPERFAMILY SSF52151 4 308 1.28E-79 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase AP3564_05900 528ed303927296e884e5bf500e2d4d53 130 SUPERFAMILY SSF54211 5 130 2.01E-49 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AP3564_05900 528ed303927296e884e5bf500e2d4d53 130 ProSitePatterns PS00360 Ribosomal protein S9 signature. 69 87 - T 13-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 AP3564_05900 528ed303927296e884e5bf500e2d4d53 130 Gene3D G3DSA:3.30.230.10 4 130 8.8E-53 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AP3564_05900 528ed303927296e884e5bf500e2d4d53 130 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 130 35.755 T 13-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid AP3564_05900 528ed303927296e884e5bf500e2d4d53 130 Pfam PF00380 Ribosomal protein S9/S16 10 130 2.5E-47 T 13-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 AP3564_06135 5d57086f60a8aa5d3b5f4cb03eecbce6 334 SMART SM00354 3 74 1.2E-31 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AP3564_06135 5d57086f60a8aa5d3b5f4cb03eecbce6 334 Gene3D G3DSA:3.40.50.2300 65 326 5.7E-81 T 13-10-2018 AP3564_06135 5d57086f60a8aa5d3b5f4cb03eecbce6 334 Gene3D G3DSA:3.40.50.2300 163 331 5.7E-81 T 13-10-2018 AP3564_06135 5d57086f60a8aa5d3b5f4cb03eecbce6 334 Pfam PF00356 Bacterial regulatory proteins, lacI family 5 51 2.7E-18 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AP3564_06135 5d57086f60a8aa5d3b5f4cb03eecbce6 334 SUPERFAMILY SSF47413 2 62 2.93E-17 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AP3564_06135 5d57086f60a8aa5d3b5f4cb03eecbce6 334 SUPERFAMILY SSF53822 64 334 6.73E-73 T 13-10-2018 IPR028082 Periplasmic binding protein-like I AP3564_06135 5d57086f60a8aa5d3b5f4cb03eecbce6 334 Pfam PF13377 Periplasmic binding protein-like domain 171 334 3.9E-37 T 13-10-2018 AP3564_06135 5d57086f60a8aa5d3b5f4cb03eecbce6 334 ProSitePatterns PS00356 LacI-type HTH domain signature. 6 24 - T 13-10-2018 AP3564_06135 5d57086f60a8aa5d3b5f4cb03eecbce6 334 Gene3D G3DSA:1.10.260.40 5 62 2.9E-23 T 13-10-2018 AP3564_12800 91b4b3be1e20819d789c6405442319bf 157 Gene3D G3DSA:3.40.30.10 1 157 3.6E-73 T 13-10-2018 AP3564_12800 91b4b3be1e20819d789c6405442319bf 157 SUPERFAMILY SSF52833 1 157 4.31E-64 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AP3564_12800 91b4b3be1e20819d789c6405442319bf 157 ProSitePatterns PS00460 Glutathione peroxidases active site. 23 38 - T 13-10-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 AP3564_12800 91b4b3be1e20819d789c6405442319bf 157 ProSitePatterns PS00763 Glutathione peroxidases signature 2. 59 66 - T 13-10-2018 IPR029760 Glutathione peroxidase conserved site Reactome: R-HSA-3299685 AP3564_12800 91b4b3be1e20819d789c6405442319bf 157 PIRSF PIRSF000303 1 157 4.7E-66 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AP3564_12800 91b4b3be1e20819d789c6405442319bf 157 PRINTS PR01011 Glutathione peroxidase family signature 21 38 1.1E-20 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AP3564_12800 91b4b3be1e20819d789c6405442319bf 157 PRINTS PR01011 Glutathione peroxidase family signature 56 72 1.1E-20 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AP3564_12800 91b4b3be1e20819d789c6405442319bf 157 PRINTS PR01011 Glutathione peroxidase family signature 121 130 1.1E-20 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AP3564_12800 91b4b3be1e20819d789c6405442319bf 157 Pfam PF00255 Glutathione peroxidase 3 108 3.5E-43 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AP3564_13245 a9696630962acc2bd240f86a1678ea53 244 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AP3564_13245 a9696630962acc2bd240f86a1678ea53 244 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 237 1.9E-68 T 13-10-2018 AP3564_13245 a9696630962acc2bd240f86a1678ea53 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 9.5E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_13245 a9696630962acc2bd240f86a1678ea53 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 9.5E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_13245 a9696630962acc2bd240f86a1678ea53 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 9.5E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_13245 a9696630962acc2bd240f86a1678ea53 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 200 220 9.5E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_13245 a9696630962acc2bd240f86a1678ea53 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 9.5E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_13245 a9696630962acc2bd240f86a1678ea53 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 9.5E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_13245 a9696630962acc2bd240f86a1678ea53 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 4.1E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_13245 a9696630962acc2bd240f86a1678ea53 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 4.1E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_13245 a9696630962acc2bd240f86a1678ea53 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 4.1E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_13245 a9696630962acc2bd240f86a1678ea53 244 Gene3D G3DSA:3.40.50.720 2 243 4.8E-80 T 13-10-2018 AP3564_13245 a9696630962acc2bd240f86a1678ea53 244 SUPERFAMILY SSF51735 5 237 3.91E-77 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_04075 03f30b7bd6efa25fd7df32c44428e53b 558 Gene3D G3DSA:1.10.730.10 432 558 1.1E-181 T 13-10-2018 AP3564_04075 03f30b7bd6efa25fd7df32c44428e53b 558 SUPERFAMILY SSF52374 117 448 9.57E-103 T 13-10-2018 AP3564_04075 03f30b7bd6efa25fd7df32c44428e53b 558 Hamap MF_00123 Arginine--tRNA ligase [argS]. 9 558 29.038 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AP3564_04075 03f30b7bd6efa25fd7df32c44428e53b 558 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 134 143 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_04075 03f30b7bd6efa25fd7df32c44428e53b 558 Gene3D G3DSA:3.30.1360.70 2 115 1.1E-29 T 13-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 AP3564_04075 03f30b7bd6efa25fd7df32c44428e53b 558 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 9 95 5.3E-26 T 13-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AP3564_04075 03f30b7bd6efa25fd7df32c44428e53b 558 SMART SM00836 437 558 9.8E-55 T 13-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 AP3564_04075 03f30b7bd6efa25fd7df32c44428e53b 558 Pfam PF00750 tRNA synthetases class I (R) 105 400 3.8E-32 T 13-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 AP3564_04075 03f30b7bd6efa25fd7df32c44428e53b 558 Pfam PF05746 DALR anticodon binding domain 438 558 1.3E-39 T 13-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 AP3564_04075 03f30b7bd6efa25fd7df32c44428e53b 558 SUPERFAMILY SSF47323 432 558 1.63E-35 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_04075 03f30b7bd6efa25fd7df32c44428e53b 558 Gene3D G3DSA:3.40.50.620 124 431 1.1E-181 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AP3564_04075 03f30b7bd6efa25fd7df32c44428e53b 558 SMART SM01016 5 95 4.7E-35 T 13-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AP3564_04075 03f30b7bd6efa25fd7df32c44428e53b 558 SUPERFAMILY SSF55190 6 115 2.22E-28 T 13-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 AP3564_04075 03f30b7bd6efa25fd7df32c44428e53b 558 PRINTS PR01038 Arginyl-tRNA synthetase signature 306 327 5.0E-25 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AP3564_04075 03f30b7bd6efa25fd7df32c44428e53b 558 PRINTS PR01038 Arginyl-tRNA synthetase signature 163 176 5.0E-25 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AP3564_04075 03f30b7bd6efa25fd7df32c44428e53b 558 PRINTS PR01038 Arginyl-tRNA synthetase signature 124 139 5.0E-25 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AP3564_04075 03f30b7bd6efa25fd7df32c44428e53b 558 PRINTS PR01038 Arginyl-tRNA synthetase signature 139 155 5.0E-25 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AP3564_04075 03f30b7bd6efa25fd7df32c44428e53b 558 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 7 558 6.9E-182 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AP3564_03620 78245f784db026effa411394b48f6a1f 345 SUPERFAMILY SSF51735 140 312 1.36E-36 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_03620 78245f784db026effa411394b48f6a1f 345 SMART SM00829 8 343 1.3E-4 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AP3564_03620 78245f784db026effa411394b48f6a1f 345 Pfam PF00107 Zinc-binding dehydrogenase 177 307 2.7E-24 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AP3564_03620 78245f784db026effa411394b48f6a1f 345 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 128 2.2E-35 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AP3564_03620 78245f784db026effa411394b48f6a1f 345 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AP3564_03620 78245f784db026effa411394b48f6a1f 345 SUPERFAMILY SSF50129 1 176 4.57E-54 T 13-10-2018 IPR011032 GroES-like superfamily AP3564_03620 78245f784db026effa411394b48f6a1f 345 Gene3D G3DSA:3.40.50.720 155 291 2.9E-99 T 13-10-2018 AP3564_03620 78245f784db026effa411394b48f6a1f 345 Gene3D G3DSA:3.90.180.10 16 335 2.9E-99 T 13-10-2018 AP3564_03525 78245f784db026effa411394b48f6a1f 345 SUPERFAMILY SSF51735 140 312 1.36E-36 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_03525 78245f784db026effa411394b48f6a1f 345 SMART SM00829 8 343 1.3E-4 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AP3564_03525 78245f784db026effa411394b48f6a1f 345 Pfam PF00107 Zinc-binding dehydrogenase 177 307 2.7E-24 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AP3564_03525 78245f784db026effa411394b48f6a1f 345 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 128 2.2E-35 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AP3564_03525 78245f784db026effa411394b48f6a1f 345 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AP3564_03525 78245f784db026effa411394b48f6a1f 345 SUPERFAMILY SSF50129 1 176 4.57E-54 T 13-10-2018 IPR011032 GroES-like superfamily AP3564_03525 78245f784db026effa411394b48f6a1f 345 Gene3D G3DSA:3.40.50.720 155 291 2.9E-99 T 13-10-2018 AP3564_03525 78245f784db026effa411394b48f6a1f 345 Gene3D G3DSA:3.90.180.10 16 335 2.9E-99 T 13-10-2018 AP3564_19640 78245f784db026effa411394b48f6a1f 345 SUPERFAMILY SSF51735 140 312 1.36E-36 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_19640 78245f784db026effa411394b48f6a1f 345 SMART SM00829 8 343 1.3E-4 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AP3564_19640 78245f784db026effa411394b48f6a1f 345 Pfam PF00107 Zinc-binding dehydrogenase 177 307 2.7E-24 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AP3564_19640 78245f784db026effa411394b48f6a1f 345 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 128 2.2E-35 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AP3564_19640 78245f784db026effa411394b48f6a1f 345 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AP3564_19640 78245f784db026effa411394b48f6a1f 345 SUPERFAMILY SSF50129 1 176 4.57E-54 T 13-10-2018 IPR011032 GroES-like superfamily AP3564_19640 78245f784db026effa411394b48f6a1f 345 Gene3D G3DSA:3.40.50.720 155 291 2.9E-99 T 13-10-2018 AP3564_19640 78245f784db026effa411394b48f6a1f 345 Gene3D G3DSA:3.90.180.10 16 335 2.9E-99 T 13-10-2018 AP3564_02640 cf632fefd46a8994326b3a0a46a78300 282 SUPERFAMILY SSF51658 19 266 2.21E-32 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily AP3564_02640 cf632fefd46a8994326b3a0a46a78300 282 Gene3D G3DSA:3.20.20.150 7 275 6.2E-31 T 13-10-2018 AP3564_02640 cf632fefd46a8994326b3a0a46a78300 282 Pfam PF01261 Xylose isomerase-like TIM barrel 27 203 8.0E-17 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AP3564_18075 cbb3dfad9e6841f8647fa9cb535546d1 343 Pfam PF00482 Type II secretion system (T2SS), protein F 14 134 1.1E-12 T 13-10-2018 IPR018076 Type II secretion system F domain AP3564_18075 cbb3dfad9e6841f8647fa9cb535546d1 343 Pfam PF00482 Type II secretion system (T2SS), protein F 213 335 5.6E-18 T 13-10-2018 IPR018076 Type II secretion system F domain AP3564_18075 cbb3dfad9e6841f8647fa9cb535546d1 343 Gene3D G3DSA:1.20.81.30 2 110 2.7E-12 T 13-10-2018 AP3564_18075 cbb3dfad9e6841f8647fa9cb535546d1 343 Gene3D G3DSA:1.20.81.30 196 308 1.3E-11 T 13-10-2018 AP3564_18075 cbb3dfad9e6841f8647fa9cb535546d1 343 PRINTS PR00812 Bacterial general secretion pathway protein F signature 308 322 3.8E-8 T 13-10-2018 IPR003004 GspF/PilC family AP3564_18075 cbb3dfad9e6841f8647fa9cb535546d1 343 PRINTS PR00812 Bacterial general secretion pathway protein F signature 106 134 3.8E-8 T 13-10-2018 IPR003004 GspF/PilC family AP3564_18075 cbb3dfad9e6841f8647fa9cb535546d1 343 PRINTS PR00812 Bacterial general secretion pathway protein F signature 324 343 3.8E-8 T 13-10-2018 IPR003004 GspF/PilC family AP3564_00615 f43a8bbed7848536fd3e7e12d6c9cdfa 504 Gene3D G3DSA:3.40.309.10 259 449 5.1E-182 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AP3564_00615 f43a8bbed7848536fd3e7e12d6c9cdfa 504 Pfam PF00171 Aldehyde dehydrogenase family 18 478 1.6E-174 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AP3564_00615 f43a8bbed7848536fd3e7e12d6c9cdfa 504 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 254 261 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AP3564_00615 f43a8bbed7848536fd3e7e12d6c9cdfa 504 TIGRFAM TIGR02299 HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 10 493 4.5E-236 T 13-10-2018 IPR011985 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase GO:0018480|GO:1901023 AP3564_00615 f43a8bbed7848536fd3e7e12d6c9cdfa 504 Gene3D G3DSA:3.40.605.10 13 476 5.1E-182 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AP3564_00615 f43a8bbed7848536fd3e7e12d6c9cdfa 504 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 282 293 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AP3564_00615 f43a8bbed7848536fd3e7e12d6c9cdfa 504 SUPERFAMILY SSF53720 9 485 8.64E-167 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AP3564_14525 1e452d807a6b30bc59a4afacae90a6c6 280 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 136 164 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AP3564_14525 1e452d807a6b30bc59a4afacae90a6c6 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 137 3.9E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_14525 1e452d807a6b30bc59a4afacae90a6c6 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 3.9E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_14525 1e452d807a6b30bc59a4afacae90a6c6 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 168 3.9E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_14525 1e452d807a6b30bc59a4afacae90a6c6 280 Gene3D G3DSA:3.40.50.720 2 280 4.3E-80 T 13-10-2018 AP3564_14525 1e452d807a6b30bc59a4afacae90a6c6 280 Pfam PF00106 short chain dehydrogenase 5 190 2.1E-52 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_14525 1e452d807a6b30bc59a4afacae90a6c6 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 9.6E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_14525 1e452d807a6b30bc59a4afacae90a6c6 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 9.6E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_14525 1e452d807a6b30bc59a4afacae90a6c6 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 9.6E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_14525 1e452d807a6b30bc59a4afacae90a6c6 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 9.6E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_14525 1e452d807a6b30bc59a4afacae90a6c6 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 9.6E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_14525 1e452d807a6b30bc59a4afacae90a6c6 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 149 168 9.6E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_14525 1e452d807a6b30bc59a4afacae90a6c6 280 SUPERFAMILY SSF51735 4 250 2.97E-68 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_05150 b82dc09682af761e9563184c10f0d644 97 Pfam PF04026 SpoVG 1 81 1.3E-36 T 13-10-2018 IPR007170 Stage V sporulation protein G GO:0030435 AP3564_05150 b82dc09682af761e9563184c10f0d644 97 SUPERFAMILY SSF160537 1 84 1.12E-33 T 13-10-2018 IPR036751 Stage V sporulation protein G superfamily GO:0030435 AP3564_05150 b82dc09682af761e9563184c10f0d644 97 Hamap MF_00819 Putative septation protein SpoVG [spoVG]. 1 92 28.381 T 13-10-2018 IPR007170 Stage V sporulation protein G GO:0030435 AP3564_05150 b82dc09682af761e9563184c10f0d644 97 Gene3D G3DSA:3.30.1120.40 1 97 3.0E-40 T 13-10-2018 IPR036751 Stage V sporulation protein G superfamily GO:0030435 AP3564_04490 b664f59a623993b3219ca577bd930f8d 309 Gene3D G3DSA:3.40.50.12740 1 173 5.5E-23 T 13-10-2018 AP3564_04490 b664f59a623993b3219ca577bd930f8d 309 SMART SM00448 1 114 1.9E-19 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_04490 b664f59a623993b3219ca577bd930f8d 309 Pfam PF08664 YcbB domain 160 299 1.7E-49 T 13-10-2018 IPR013972 YcbB domain AP3564_04490 b664f59a623993b3219ca577bd930f8d 309 SUPERFAMILY SSF52172 2 138 3.27E-24 T 13-10-2018 IPR011006 CheY-like superfamily AP3564_04490 b664f59a623993b3219ca577bd930f8d 309 Pfam PF00072 Response regulator receiver domain 4 113 6.5E-20 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_16480 04a845913fb8bf5b51008071906c376a 568 Pfam PF05833 Fibronectin-binding protein A N-terminus (FbpA) 4 444 2.8E-162 T 13-10-2018 AP3564_16480 04a845913fb8bf5b51008071906c376a 568 Gene3D G3DSA:2.30.310.10 1 167 1.1E-68 T 13-10-2018 AP3564_16480 04a845913fb8bf5b51008071906c376a 568 Gene3D G3DSA:1.10.8.50 168 237 3.3E-20 T 13-10-2018 AP3564_16480 04a845913fb8bf5b51008071906c376a 568 Gene3D G3DSA:3.40.970.40 242 289 4.1E-15 T 13-10-2018 AP3564_16480 04a845913fb8bf5b51008071906c376a 568 Pfam PF05670 Domain of unknown function (DUF814) 453 536 9.9E-31 T 13-10-2018 IPR008532 Domain of unknown function DUF814 AP3564_07955 a292b34ac5756ce829ea2d6f69802963 377 Gene3D G3DSA:1.20.1090.10 184 377 6.3E-55 T 13-10-2018 AP3564_07955 a292b34ac5756ce829ea2d6f69802963 377 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 172 200 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AP3564_07955 a292b34ac5756ce829ea2d6f69802963 377 Pfam PF00465 Iron-containing alcohol dehydrogenase 9 368 6.5E-102 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 AP3564_07955 a292b34ac5756ce829ea2d6f69802963 377 Gene3D G3DSA:3.40.50.1970 1 183 3.1E-49 T 13-10-2018 AP3564_07955 a292b34ac5756ce829ea2d6f69802963 377 SUPERFAMILY SSF56796 2 376 1.57E-103 T 13-10-2018 AP3564_11985 18082bd9eb3ee946fd66cb74e5d6021d 236 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 174 202 - T 13-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AP3564_11985 18082bd9eb3ee946fd66cb74e5d6021d 236 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 165 198 4.0E-10 T 13-10-2018 IPR001451 Hexapeptide repeat AP3564_11985 18082bd9eb3ee946fd66cb74e5d6021d 236 Hamap MF_01691 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase [dapH]. 1 235 46.436 T 13-10-2018 IPR019873 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, DapH GO:0009089|GO:0047200 KEGG: 00300+2.3.1.89|MetaCyc: PWY-2941 AP3564_11985 18082bd9eb3ee946fd66cb74e5d6021d 236 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 121 156 1.9E-10 T 13-10-2018 IPR001451 Hexapeptide repeat AP3564_11985 18082bd9eb3ee946fd66cb74e5d6021d 236 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 91 119 3.4E-5 T 13-10-2018 IPR001451 Hexapeptide repeat AP3564_11985 18082bd9eb3ee946fd66cb74e5d6021d 236 SUPERFAMILY SSF51161 44 225 1.01E-52 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily AP3564_11985 18082bd9eb3ee946fd66cb74e5d6021d 236 Gene3D G3DSA:2.160.10.10 85 236 1.9E-51 T 13-10-2018 AP3564_11985 18082bd9eb3ee946fd66cb74e5d6021d 236 Gene3D G3DSA:3.30.70.250 1 84 5.1E-36 T 13-10-2018 AP3564_11985 18082bd9eb3ee946fd66cb74e5d6021d 236 Pfam PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal 4 87 2.8E-37 T 13-10-2018 IPR013710 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, N-terminal GO:0047200 KEGG: 00300+2.3.1.89|MetaCyc: PWY-2941 AP3564_11985 18082bd9eb3ee946fd66cb74e5d6021d 236 TIGRFAM TIGR03532 DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase 6 236 6.1E-121 T 13-10-2018 IPR019873 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, DapH GO:0009089|GO:0047200 KEGG: 00300+2.3.1.89|MetaCyc: PWY-2941 AP3564_08925 4b9edb59f999affba13b34ff42bb9617 103 Pfam PF00085 Thioredoxin 11 97 8.3E-11 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 AP3564_08925 4b9edb59f999affba13b34ff42bb9617 103 SUPERFAMILY SSF52833 2 100 4.16E-17 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AP3564_08925 4b9edb59f999affba13b34ff42bb9617 103 Gene3D G3DSA:3.40.30.10 2 102 4.7E-14 T 13-10-2018 AP3564_07225 77649807a37f981935e44396f6b18c9a 334 SUPERFAMILY SSF50891 195 310 9.1E-10 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily AP3564_07225 77649807a37f981935e44396f6b18c9a 334 Gene3D G3DSA:2.40.100.10 193 331 3.3E-52 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily AP3564_07225 77649807a37f981935e44396f6b18c9a 334 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 3 328 7.5E-101 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B AP3564_07225 77649807a37f981935e44396f6b18c9a 334 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 26 303 1.0E-97 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B AP3564_07225 77649807a37f981935e44396f6b18c9a 334 SMART SM00797 24 320 1.1E-144 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B AP3564_07515 7076095c05e9dd4bb806c6ec73277585 525 PRINTS PR00344 Bacterial sensor protein C-terminal signature 487 505 5.6E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_07515 7076095c05e9dd4bb806c6ec73277585 525 PRINTS PR00344 Bacterial sensor protein C-terminal signature 511 524 5.6E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_07515 7076095c05e9dd4bb806c6ec73277585 525 PRINTS PR00344 Bacterial sensor protein C-terminal signature 475 485 5.6E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_07515 7076095c05e9dd4bb806c6ec73277585 525 PRINTS PR00344 Bacterial sensor protein C-terminal signature 457 471 5.6E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_07515 7076095c05e9dd4bb806c6ec73277585 525 SUPERFAMILY SSF55785 223 320 5.14E-9 T 13-10-2018 IPR035965 PAS domain superfamily AP3564_07515 7076095c05e9dd4bb806c6ec73277585 525 SMART SM00091 212 277 5.6E-4 T 13-10-2018 IPR000014 PAS domain AP3564_07515 7076095c05e9dd4bb806c6ec73277585 525 SMART SM00387 416 525 4.6E-25 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_07515 7076095c05e9dd4bb806c6ec73277585 525 Gene3D G3DSA:3.30.450.20 199 311 9.3E-22 T 13-10-2018 AP3564_07515 7076095c05e9dd4bb806c6ec73277585 525 SUPERFAMILY SSF103190 35 167 6.28E-29 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily AP3564_07515 7076095c05e9dd4bb806c6ec73277585 525 Gene3D G3DSA:3.30.565.10 371 524 4.9E-31 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_07515 7076095c05e9dd4bb806c6ec73277585 525 Pfam PF17203 Single cache domain 3 38 167 3.1E-16 T 13-10-2018 IPR033463 Single cache domain 3 AP3564_07515 7076095c05e9dd4bb806c6ec73277585 525 SUPERFAMILY SSF55890 319 378 1.09E-13 T 13-10-2018 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 AP3564_07515 7076095c05e9dd4bb806c6ec73277585 525 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 318 373 2.0E-11 T 13-10-2018 IPR039506 SpoOB, alpha-helical domain AP3564_07515 7076095c05e9dd4bb806c6ec73277585 525 Gene3D G3DSA:3.30.450.20 31 162 3.7E-32 T 13-10-2018 AP3564_07515 7076095c05e9dd4bb806c6ec73277585 525 Pfam PF00989 PAS fold 218 274 2.7E-5 T 13-10-2018 IPR013767 PAS fold GO:0006355 AP3564_07515 7076095c05e9dd4bb806c6ec73277585 525 SUPERFAMILY SSF55874 395 523 1.83E-30 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_07515 7076095c05e9dd4bb806c6ec73277585 525 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 418 524 4.7E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_01990 428e55b824964bc1bbaec65ad705cfa3 320 SUPERFAMILY SSF56059 131 304 5.4E-25 T 13-10-2018 AP3564_01990 428e55b824964bc1bbaec65ad705cfa3 320 Gene3D G3DSA:3.30.470.20 203 308 1.4E-19 T 13-10-2018 AP3564_01990 428e55b824964bc1bbaec65ad705cfa3 320 Pfam PF08443 RimK-like ATP-grasp domain 134 303 1.6E-16 T 13-10-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 AP3564_11720 2bc0a2f5000bee94eb3a09e0b1b6a077 219 PIRSF PIRSF006293 2 219 8.3E-80 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 AP3564_11720 2bc0a2f5000bee94eb3a09e0b1b6a077 219 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 4 217 52.399 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 AP3564_11720 2bc0a2f5000bee94eb3a09e0b1b6a077 219 SUPERFAMILY SSF52402 3 214 8.38E-73 T 13-10-2018 AP3564_11720 2bc0a2f5000bee94eb3a09e0b1b6a077 219 Pfam PF06508 Queuosine biosynthesis protein QueC 5 211 1.5E-87 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 AP3564_11720 2bc0a2f5000bee94eb3a09e0b1b6a077 219 Gene3D G3DSA:3.40.50.620 1 218 2.5E-80 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AP3564_11720 2bc0a2f5000bee94eb3a09e0b1b6a077 219 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 6 204 3.5E-86 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 AP3564_11990 0bf7157caac29eb49e11a3a44d3bfad7 375 Gene3D G3DSA:3.30.70.360 173 287 1.1E-118 T 13-10-2018 AP3564_11990 0bf7157caac29eb49e11a3a44d3bfad7 375 SUPERFAMILY SSF55031 178 283 6.8E-29 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain AP3564_11990 0bf7157caac29eb49e11a3a44d3bfad7 375 Gene3D G3DSA:3.40.630.10 6 358 1.1E-118 T 13-10-2018 AP3564_11990 0bf7157caac29eb49e11a3a44d3bfad7 375 Pfam PF07687 Peptidase dimerisation domain 180 269 1.5E-8 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain AP3564_11990 0bf7157caac29eb49e11a3a44d3bfad7 375 Pfam PF01546 Peptidase family M20/M25/M40 67 368 2.8E-23 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 AP3564_11990 0bf7157caac29eb49e11a3a44d3bfad7 375 SUPERFAMILY SSF53187 3 367 5.45E-65 T 13-10-2018 AP3564_11990 0bf7157caac29eb49e11a3a44d3bfad7 375 PIRSF PIRSF005962 1 375 2.5E-109 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 AP3564_11990 0bf7157caac29eb49e11a3a44d3bfad7 375 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 6 361 5.1E-88 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 AP3564_11990 0bf7157caac29eb49e11a3a44d3bfad7 375 Hamap MF_01692 N-acetyldiaminopimelate deacetylase. 3 372 63.492 T 13-10-2018 IPR023905 Acetyldiaminopimelate deacetylase GO:0009089|GO:0050118 KEGG: 00300+3.5.1.47|MetaCyc: PWY-2941 AP3564_16540 582ea29d931ffae6df3ed4a937d41af8 1062 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 7.7E-65 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_16540 582ea29d931ffae6df3ed4a937d41af8 1062 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 7.7E-65 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_16540 582ea29d931ffae6df3ed4a937d41af8 1062 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 296 325 7.7E-65 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_16540 582ea29d931ffae6df3ed4a937d41af8 1062 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 7.7E-65 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_16540 582ea29d931ffae6df3ed4a937d41af8 1062 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 378 396 7.7E-65 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_16540 582ea29d931ffae6df3ed4a937d41af8 1062 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 7.7E-65 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_16540 582ea29d931ffae6df3ed4a937d41af8 1062 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 7.7E-65 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_16540 582ea29d931ffae6df3ed4a937d41af8 1062 SMART SM01209 671 835 0.0082 T 13-10-2018 AP3564_16540 582ea29d931ffae6df3ed4a937d41af8 1062 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 164 178 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AP3564_16540 582ea29d931ffae6df3ed4a937d41af8 1062 SUPERFAMILY SSF52440 1 127 1.44E-50 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AP3564_16540 582ea29d931ffae6df3ed4a937d41af8 1062 Pfam PF02142 MGS-like domain 949 1035 6.9E-21 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain AP3564_16540 582ea29d931ffae6df3ed4a937d41af8 1062 Gene3D G3DSA:1.10.1030.10 402 545 6.2E-49 T 13-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_16540 582ea29d931ffae6df3ed4a937d41af8 1062 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 829 836 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AP3564_16540 582ea29d931ffae6df3ed4a937d41af8 1062 Gene3D G3DSA:3.40.50.20 546 654 4.0E-45 T 13-10-2018 AP3564_16540 582ea29d931ffae6df3ed4a937d41af8 1062 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 296 303 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AP3564_16540 582ea29d931ffae6df3ed4a937d41af8 1062 SUPERFAMILY SSF48108 395 545 1.57E-52 T 13-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_16540 582ea29d931ffae6df3ed4a937d41af8 1062 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 701 715 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AP3564_16540 582ea29d931ffae6df3ed4a937d41af8 1062 Gene3D G3DSA:3.30.470.20 120 401 1.3E-125 T 13-10-2018 AP3564_16540 582ea29d931ffae6df3ed4a937d41af8 1062 Gene3D G3DSA:3.40.50.20 1 116 9.7E-50 T 13-10-2018 AP3564_16540 582ea29d931ffae6df3ed4a937d41af8 1062 SUPERFAMILY SSF52440 549 667 7.77E-48 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AP3564_16540 582ea29d931ffae6df3ed4a937d41af8 1062 SUPERFAMILY SSF52335 935 1050 1.13E-32 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily AP3564_16540 582ea29d931ffae6df3ed4a937d41af8 1062 Gene3D G3DSA:3.30.470.20 658 928 3.1E-108 T 13-10-2018 AP3564_16540 582ea29d931ffae6df3ed4a937d41af8 1062 SMART SM00851 948 1035 5.2E-27 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain AP3564_16540 582ea29d931ffae6df3ed4a937d41af8 1062 Gene3D G3DSA:3.40.50.1380 930 1062 3.3E-39 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily AP3564_16540 582ea29d931ffae6df3ed4a937d41af8 1062 SUPERFAMILY SSF56059 665 926 1.94E-102 T 13-10-2018 AP3564_16540 582ea29d931ffae6df3ed4a937d41af8 1062 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 422 539 1.1E-43 T 13-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_16540 582ea29d931ffae6df3ed4a937d41af8 1062 SMART SM01096 419 539 9.7E-73 T 13-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_16540 582ea29d931ffae6df3ed4a937d41af8 1062 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1060 13.732 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_16540 582ea29d931ffae6df3ed4a937d41af8 1062 SUPERFAMILY SSF56059 128 399 1.47E-110 T 13-10-2018 AP3564_16540 582ea29d931ffae6df3ed4a937d41af8 1062 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1046 0.0 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_16540 582ea29d931ffae6df3ed4a937d41af8 1062 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 665 866 1.4E-38 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AP3564_16540 582ea29d931ffae6df3ed4a937d41af8 1062 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 333 6.3E-79 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AP3564_16540 582ea29d931ffae6df3ed4a937d41af8 1062 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1056 13.275 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_16075 20a4db86da6df513207cc1771e44a534 256 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 221 247 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_16075 20a4db86da6df513207cc1771e44a534 256 Pfam PF04539 Sigma-70 region 3 108 187 3.3E-11 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 AP3564_16075 20a4db86da6df513207cc1771e44a534 256 SUPERFAMILY SSF88659 166 252 7.66E-21 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AP3564_16075 20a4db86da6df513207cc1771e44a534 256 Gene3D G3DSA:1.20.140.160 100 253 5.4E-46 T 13-10-2018 AP3564_16075 20a4db86da6df513207cc1771e44a534 256 Pfam PF04545 Sigma-70, region 4 201 248 5.9E-16 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 AP3564_16075 20a4db86da6df513207cc1771e44a534 256 SUPERFAMILY SSF88946 6 101 1.13E-27 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AP3564_16075 20a4db86da6df513207cc1771e44a534 256 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 25 249 9.1E-34 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AP3564_16075 20a4db86da6df513207cc1771e44a534 256 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 29 251 1.2E-84 T 13-10-2018 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 AP3564_16075 20a4db86da6df513207cc1771e44a534 256 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 56 69 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_16075 20a4db86da6df513207cc1771e44a534 256 PIRSF PIRSF000770 17 256 3.0E-48 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_16075 20a4db86da6df513207cc1771e44a534 256 Pfam PF04542 Sigma-70 region 2 29 101 4.7E-15 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AP3564_16075 20a4db86da6df513207cc1771e44a534 256 SUPERFAMILY SSF88659 102 173 2.83E-16 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AP3564_16075 20a4db86da6df513207cc1771e44a534 256 Gene3D G3DSA:1.10.1740.10 16 98 6.3E-29 T 13-10-2018 AP3564_16075 20a4db86da6df513207cc1771e44a534 256 PRINTS PR00046 Major sigma-70 factor signature 221 236 6.7E-13 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_16075 20a4db86da6df513207cc1771e44a534 256 PRINTS PR00046 Major sigma-70 factor signature 56 69 6.7E-13 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_16075 20a4db86da6df513207cc1771e44a534 256 PRINTS PR00046 Major sigma-70 factor signature 204 216 6.7E-13 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_16075 20a4db86da6df513207cc1771e44a534 256 PRINTS PR00046 Major sigma-70 factor signature 236 247 6.7E-13 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_16075 20a4db86da6df513207cc1771e44a534 256 PRINTS PR00046 Major sigma-70 factor signature 80 88 6.7E-13 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_16155 406899a82eab16e0533884066964e266 332 PIRSF PIRSF002888 2 332 9.8E-115 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AP3564_16155 406899a82eab16e0533884066964e266 332 Gene3D G3DSA:2.30.330.10 240 331 4.9E-7 T 13-10-2018 IPR036429 SpoA-like superfamily AP3564_16155 406899a82eab16e0533884066964e266 332 SUPERFAMILY SSF101801 253 329 3.53E-17 T 13-10-2018 IPR036429 SpoA-like superfamily AP3564_16155 406899a82eab16e0533884066964e266 332 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 4 324 1.5E-110 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AP3564_16155 406899a82eab16e0533884066964e266 332 Pfam PF02154 Flagellar motor switch protein FliM 40 230 8.2E-74 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AP3564_16155 406899a82eab16e0533884066964e266 332 SUPERFAMILY SSF103039 47 232 3.01E-34 T 13-10-2018 IPR028976 CheC-like superfamily AP3564_16155 406899a82eab16e0533884066964e266 332 Gene3D G3DSA:3.40.1550.10 48 234 2.5E-59 T 13-10-2018 IPR028976 CheC-like superfamily AP3564_16155 406899a82eab16e0533884066964e266 332 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 254 324 1.9E-20 T 13-10-2018 IPR001543 Surface presentation of antigen (SpoA) AP3564_16155 406899a82eab16e0533884066964e266 332 PRINTS PR00955 Flagellar motor switch protein FliM signature 212 230 1.2E-29 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AP3564_16155 406899a82eab16e0533884066964e266 332 PRINTS PR00955 Flagellar motor switch protein FliM signature 91 107 1.2E-29 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AP3564_16155 406899a82eab16e0533884066964e266 332 PRINTS PR00955 Flagellar motor switch protein FliM signature 3 16 1.2E-29 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AP3564_16155 406899a82eab16e0533884066964e266 332 PRINTS PR00955 Flagellar motor switch protein FliM signature 116 135 1.2E-29 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AP3564_18240 f17494f3f5ca62d9cd1f4cf742560e1e 580 Pfam PF05598 Transposase domain (DUF772) 69 139 7.9E-19 T 13-10-2018 IPR008490 Transposase InsH, N-terminal AP3564_18240 f17494f3f5ca62d9cd1f4cf742560e1e 580 Pfam PF13751 Transposase DDE domain 412 536 1.7E-30 T 13-10-2018 IPR025668 Transposase DDE domain AP3564_11755 773572648609a133ceeab95132b58ca4 169 SUPERFAMILY SSF88946 5 75 4.84E-12 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AP3564_11755 773572648609a133ceeab95132b58ca4 169 Pfam PF04542 Sigma-70 region 2 11 76 7.3E-10 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AP3564_11755 773572648609a133ceeab95132b58ca4 169 SUPERFAMILY SSF88659 103 164 1.16E-16 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AP3564_11755 773572648609a133ceeab95132b58ca4 169 Pfam PF08281 Sigma-70, region 4 110 158 1.7E-11 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AP3564_11755 773572648609a133ceeab95132b58ca4 169 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 6 161 1.1E-27 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AP3564_11755 773572648609a133ceeab95132b58ca4 169 Gene3D G3DSA:1.10.10.10 98 164 2.5E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_11755 773572648609a133ceeab95132b58ca4 169 Gene3D G3DSA:1.10.1740.10 1 74 1.8E-8 T 13-10-2018 AP3564_15605 7b9cd8f4b7242da9c216e2944d32a35a 337 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 67 334 4.1E-35 T 13-10-2018 IPR005064 Bordetella uptake gene GO:0030288 AP3564_15605 7b9cd8f4b7242da9c216e2944d32a35a 337 SUPERFAMILY SSF53850 46 260 3.65E-11 T 13-10-2018 AP3564_15605 7b9cd8f4b7242da9c216e2944d32a35a 337 Gene3D G3DSA:3.40.190.150 36 325 3.4E-78 T 13-10-2018 AP3564_15605 7b9cd8f4b7242da9c216e2944d32a35a 337 PIRSF PIRSF017082 1 337 2.9E-108 T 13-10-2018 IPR005064 Bordetella uptake gene GO:0030288 AP3564_15605 7b9cd8f4b7242da9c216e2944d32a35a 337 Gene3D G3DSA:3.40.190.10 136 263 3.4E-78 T 13-10-2018 AP3564_09735 bb32adebb25e23ae5dbbc07a4c80774b 213 SUPERFAMILY SSF53335 11 208 2.5E-30 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_09735 bb32adebb25e23ae5dbbc07a4c80774b 213 Pfam PF02390 Putative methyltransferase 39 207 3.3E-48 T 13-10-2018 AP3564_09735 bb32adebb25e23ae5dbbc07a4c80774b 213 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 26 210 4.5E-60 T 13-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 AP3564_09735 bb32adebb25e23ae5dbbc07a4c80774b 213 Gene3D G3DSA:3.40.50.150 1 213 1.4E-72 T 13-10-2018 AP3564_09735 bb32adebb25e23ae5dbbc07a4c80774b 213 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 1 212 29.795 T 13-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 AP3564_18450 69daf3c3e3bf619ae27532ebd00717e9 251 SUPERFAMILY SSF88697 2 70 1.22E-14 T 13-10-2018 IPR015947 PUA-like superfamily AP3564_18450 69daf3c3e3bf619ae27532ebd00717e9 251 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 4 248 2.0E-71 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 AP3564_18450 69daf3c3e3bf619ae27532ebd00717e9 251 SUPERFAMILY SSF75217 73 248 1.96E-54 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases AP3564_18450 69daf3c3e3bf619ae27532ebd00717e9 251 Pfam PF04452 RNA methyltransferase 18 245 2.2E-74 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 AP3564_18450 69daf3c3e3bf619ae27532ebd00717e9 251 PIRSF PIRSF015601 1 249 3.2E-65 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 AP3564_18450 69daf3c3e3bf619ae27532ebd00717e9 251 Gene3D G3DSA:3.40.1280.10 1 251 2.7E-89 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AP3564_01240 cdf42fe4653c7fb15fd1f796bfeb7cbb 391 PIRSF PIRSF000429 1 391 1.6E-128 T 13-10-2018 IPR002155 Thiolase GO:0016747 AP3564_01240 cdf42fe4653c7fb15fd1f796bfeb7cbb 391 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 85 103 - T 13-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 AP3564_01240 cdf42fe4653c7fb15fd1f796bfeb7cbb 391 Pfam PF02803 Thiolase, C-terminal domain 268 389 2.0E-47 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 AP3564_01240 cdf42fe4653c7fb15fd1f796bfeb7cbb 391 Gene3D G3DSA:3.40.47.10 8 274 4.2E-149 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AP3564_01240 cdf42fe4653c7fb15fd1f796bfeb7cbb 391 ProSitePatterns PS00737 Thiolases signature 2. 337 353 - T 13-10-2018 IPR020613 Thiolase, conserved site GO:0016747 AP3564_01240 cdf42fe4653c7fb15fd1f796bfeb7cbb 391 Pfam PF00108 Thiolase, N-terminal domain 4 260 3.5E-82 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 AP3564_01240 cdf42fe4653c7fb15fd1f796bfeb7cbb 391 Gene3D G3DSA:3.40.47.10 127 387 4.2E-149 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AP3564_01240 cdf42fe4653c7fb15fd1f796bfeb7cbb 391 SUPERFAMILY SSF53901 3 268 1.77E-82 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AP3564_01240 cdf42fe4653c7fb15fd1f796bfeb7cbb 391 SUPERFAMILY SSF53901 269 389 4.07E-43 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AP3564_01240 cdf42fe4653c7fb15fd1f796bfeb7cbb 391 ProSitePatterns PS00099 Thiolases active site. 372 385 - T 13-10-2018 IPR020610 Thiolase, active site GO:0016747 AP3564_01240 cdf42fe4653c7fb15fd1f796bfeb7cbb 391 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 7 389 3.2E-136 T 13-10-2018 IPR002155 Thiolase GO:0016747 AP3564_07865 5bc2de81b8f39863a0ee37288053d6c3 276 Pfam PF00874 PRD domain 179 271 1.8E-20 T 13-10-2018 IPR011608 PRD domain GO:0006355 AP3564_07865 5bc2de81b8f39863a0ee37288053d6c3 276 Pfam PF00874 PRD domain 74 162 5.8E-28 T 13-10-2018 IPR011608 PRD domain GO:0006355 AP3564_07865 5bc2de81b8f39863a0ee37288053d6c3 276 ProSitePatterns PS00654 PRD domain signature. 97 109 - T 13-10-2018 IPR001550 Transcription antiterminator, conserved site GO:0003723|GO:0045893 AP3564_07865 5bc2de81b8f39863a0ee37288053d6c3 276 Gene3D G3DSA:1.10.1790.10 167 276 1.2E-41 T 13-10-2018 AP3564_07865 5bc2de81b8f39863a0ee37288053d6c3 276 SUPERFAMILY SSF63520 170 272 1.44E-30 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 AP3564_07865 5bc2de81b8f39863a0ee37288053d6c3 276 Gene3D G3DSA:1.10.1790.10 63 166 7.8E-42 T 13-10-2018 AP3564_07865 5bc2de81b8f39863a0ee37288053d6c3 276 SUPERFAMILY SSF63520 57 165 1.23E-34 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 AP3564_07865 5bc2de81b8f39863a0ee37288053d6c3 276 SUPERFAMILY SSF50151 2 53 8.63E-17 T 13-10-2018 IPR036650 CAT RNA-binding domain superfamily GO:0003723 AP3564_07865 5bc2de81b8f39863a0ee37288053d6c3 276 Pfam PF03123 CAT RNA binding domain 2 54 5.7E-22 T 13-10-2018 IPR004341 CAT RNA-binding domain GO:0003723 AP3564_07865 5bc2de81b8f39863a0ee37288053d6c3 276 SMART SM01061 1 58 2.0E-25 T 13-10-2018 IPR004341 CAT RNA-binding domain GO:0003723 AP3564_07865 5bc2de81b8f39863a0ee37288053d6c3 276 Gene3D G3DSA:2.30.24.10 1 54 2.6E-21 T 13-10-2018 IPR036650 CAT RNA-binding domain superfamily GO:0003723 AP3564_02560 d70a2debedc70c14144fbdabc8f09dce 681 Gene3D G3DSA:3.30.1340.10 2 93 2.3E-10 T 13-10-2018 IPR035895 HPr-like superfamily AP3564_02560 d70a2debedc70c14144fbdabc8f09dce 681 SMART SM00091 108 174 8.0E-8 T 13-10-2018 IPR000014 PAS domain AP3564_02560 d70a2debedc70c14144fbdabc8f09dce 681 SMART SM00091 225 291 51.0 T 13-10-2018 IPR000014 PAS domain AP3564_02560 d70a2debedc70c14144fbdabc8f09dce 681 Gene3D G3DSA:1.10.8.60 529 607 3.5E-25 T 13-10-2018 AP3564_02560 d70a2debedc70c14144fbdabc8f09dce 681 Pfam PF00381 PTS HPr component phosphorylation site 4 87 1.6E-10 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like AP3564_02560 d70a2debedc70c14144fbdabc8f09dce 681 SUPERFAMILY SSF55594 4 88 9.81E-8 T 13-10-2018 IPR035895 HPr-like superfamily AP3564_02560 d70a2debedc70c14144fbdabc8f09dce 681 Gene3D G3DSA:3.30.450.20 110 212 3.9E-19 T 13-10-2018 AP3564_02560 d70a2debedc70c14144fbdabc8f09dce 681 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 444 459 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AP3564_02560 d70a2debedc70c14144fbdabc8f09dce 681 Pfam PF00989 PAS fold 111 207 5.9E-11 T 13-10-2018 IPR013767 PAS fold GO:0006355 AP3564_02560 d70a2debedc70c14144fbdabc8f09dce 681 TIGRFAM TIGR04381 HTH_TypR: TyrR family helix-turn-helix domain 628 671 3.2E-9 T 13-10-2018 IPR030828 TyrR family, helix-turn-helix domain GO:0003677 AP3564_02560 d70a2debedc70c14144fbdabc8f09dce 681 SMART SM00382 378 521 3.3E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_02560 d70a2debedc70c14144fbdabc8f09dce 681 Pfam PF00158 Sigma-54 interaction domain 358 525 7.9E-72 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AP3564_02560 d70a2debedc70c14144fbdabc8f09dce 681 SUPERFAMILY SSF46689 627 671 2.27E-6 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_02560 d70a2debedc70c14144fbdabc8f09dce 681 SUPERFAMILY SSF55785 97 208 1.27E-12 T 13-10-2018 IPR035965 PAS domain superfamily AP3564_02560 d70a2debedc70c14144fbdabc8f09dce 681 SUPERFAMILY SSF52540 358 602 5.73E-72 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_02560 d70a2debedc70c14144fbdabc8f09dce 681 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 382 395 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AP3564_02560 d70a2debedc70c14144fbdabc8f09dce 681 Gene3D G3DSA:1.10.10.60 620 672 1.6E-9 T 13-10-2018 AP3564_02560 d70a2debedc70c14144fbdabc8f09dce 681 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 571 580 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site AP3564_02560 d70a2debedc70c14144fbdabc8f09dce 681 Gene3D G3DSA:3.40.50.300 345 528 1.3E-64 T 13-10-2018 AP3564_04775 8180cb45dd3341935c5a1c22f1193d20 78 Pfam PF01084 Ribosomal protein S18 21 71 4.6E-29 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_04775 8180cb45dd3341935c5a1c22f1193d20 78 SUPERFAMILY SSF46911 3 76 3.14E-32 T 13-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_04775 8180cb45dd3341935c5a1c22f1193d20 78 PRINTS PR00974 Ribosomal protein S18 family signature 49 63 5.9E-22 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_04775 8180cb45dd3341935c5a1c22f1193d20 78 PRINTS PR00974 Ribosomal protein S18 family signature 41 48 5.9E-22 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_04775 8180cb45dd3341935c5a1c22f1193d20 78 PRINTS PR00974 Ribosomal protein S18 family signature 31 41 5.9E-22 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_04775 8180cb45dd3341935c5a1c22f1193d20 78 PRINTS PR00974 Ribosomal protein S18 family signature 63 73 5.9E-22 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_04775 8180cb45dd3341935c5a1c22f1193d20 78 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 23 76 1.0E-24 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_04775 8180cb45dd3341935c5a1c22f1193d20 78 Gene3D G3DSA:4.10.640.10 2 77 8.4E-32 T 13-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_04775 8180cb45dd3341935c5a1c22f1193d20 78 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 5 76 23.178 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_04775 8180cb45dd3341935c5a1c22f1193d20 78 ProSitePatterns PS00057 Ribosomal protein S18 signature. 24 47 - T 13-10-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_04775 8180cb45dd3341935c5a1c22f1193d20 78 TIGRFAM TIGR00165 S18: ribosomal protein bS18 9 76 2.4E-38 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_16355 4562cdf0a660bafcc3cd3325ac73f469 246 Hamap MF_00104 Ribonuclease 3 [rnc]. 21 237 31.427 T 13-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 AP3564_16355 4562cdf0a660bafcc3cd3325ac73f469 246 Gene3D G3DSA:1.10.1520.10 18 165 4.9E-48 T 13-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 AP3564_16355 4562cdf0a660bafcc3cd3325ac73f469 246 Pfam PF14622 Ribonuclease-III-like 31 161 1.7E-37 T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 AP3564_16355 4562cdf0a660bafcc3cd3325ac73f469 246 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 21 240 7.9E-82 T 13-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 AP3564_16355 4562cdf0a660bafcc3cd3325ac73f469 246 SMART SM00535 33 168 1.1E-60 T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 AP3564_16355 4562cdf0a660bafcc3cd3325ac73f469 246 SUPERFAMILY SSF69065 15 176 5.58E-53 T 13-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 AP3564_16355 4562cdf0a660bafcc3cd3325ac73f469 246 SUPERFAMILY SSF54768 130 244 8.49E-25 T 13-10-2018 AP3564_16355 4562cdf0a660bafcc3cd3325ac73f469 246 Pfam PF00035 Double-stranded RNA binding motif 175 240 1.8E-19 T 13-10-2018 IPR014720 Double-stranded RNA-binding domain AP3564_16355 4562cdf0a660bafcc3cd3325ac73f469 246 Gene3D G3DSA:3.30.160.20 173 240 2.5E-23 T 13-10-2018 AP3564_16355 4562cdf0a660bafcc3cd3325ac73f469 246 ProSitePatterns PS00517 Ribonuclease III family signature. 57 65 - T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 AP3564_16355 4562cdf0a660bafcc3cd3325ac73f469 246 SMART SM00358 174 241 4.2E-24 T 13-10-2018 IPR014720 Double-stranded RNA-binding domain AP3564_06400 94320678257687abaf28b62a08d59347 327 Pfam PF02653 Branched-chain amino acid transport system / permease component 43 306 2.2E-44 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AP3564_05830 cb0fe1787d3904b78597783309351fb6 217 TIGRFAM TIGR01351 adk: adenylate kinase 2 211 9.9E-83 T 13-10-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 AP3564_05830 cb0fe1787d3904b78597783309351fb6 217 SUPERFAMILY SSF52540 1 213 3.3E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_05830 cb0fe1787d3904b78597783309351fb6 217 PRINTS PR00094 Adenylate kinase signature 177 191 1.6E-34 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AP3564_05830 cb0fe1787d3904b78597783309351fb6 217 PRINTS PR00094 Adenylate kinase signature 32 46 1.6E-34 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AP3564_05830 cb0fe1787d3904b78597783309351fb6 217 PRINTS PR00094 Adenylate kinase signature 4 17 1.6E-34 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AP3564_05830 cb0fe1787d3904b78597783309351fb6 217 PRINTS PR00094 Adenylate kinase signature 160 175 1.6E-34 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AP3564_05830 cb0fe1787d3904b78597783309351fb6 217 PRINTS PR00094 Adenylate kinase signature 81 97 1.6E-34 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AP3564_05830 cb0fe1787d3904b78597783309351fb6 217 Hamap MF_00235 Adenylate kinase [adk]. 1 213 54.807 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AP3564_05830 cb0fe1787d3904b78597783309351fb6 217 Pfam PF00406 Adenylate kinase 5 190 6.8E-63 T 13-10-2018 AP3564_05830 cb0fe1787d3904b78597783309351fb6 217 Gene3D G3DSA:3.40.50.300 1 214 9.9E-86 T 13-10-2018 AP3564_05830 cb0fe1787d3904b78597783309351fb6 217 Pfam PF05191 Adenylate kinase, active site lid 127 162 5.2E-20 T 13-10-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 AP3564_05830 cb0fe1787d3904b78597783309351fb6 217 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 13-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AP3564_11550 978c2ed31c7f290edba316ea0ab98388 175 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 4 146 8.3E-43 T 13-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 AP3564_11550 978c2ed31c7f290edba316ea0ab98388 175 Gene3D G3DSA:3.40.50.1000 3 175 2.1E-54 T 13-10-2018 IPR023214 HAD superfamily AP3564_11550 978c2ed31c7f290edba316ea0ab98388 175 Pfam PF13242 HAD-hyrolase-like 103 150 1.2E-12 T 13-10-2018 AP3564_11550 978c2ed31c7f290edba316ea0ab98388 175 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 4 148 4.6E-32 T 13-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 AP3564_11550 978c2ed31c7f290edba316ea0ab98388 175 SUPERFAMILY SSF56784 3 171 2.03E-40 T 13-10-2018 IPR036412 HAD-like superfamily AP3564_11550 978c2ed31c7f290edba316ea0ab98388 175 PIRSF PIRSF004682 1 171 3.4E-56 T 13-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 AP3564_12065 831c56b7451e598c98b4107b22245d46 233 SMART SM00382 26 218 2.5E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_12065 831c56b7451e598c98b4107b22245d46 233 TIGRFAM TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE 2 233 1.1E-93 T 13-10-2018 IPR017780 ABC transporter, urea, ATP-binding protein, UrtE AP3564_12065 831c56b7451e598c98b4107b22245d46 233 Pfam PF00005 ABC transporter 17 162 9.6E-37 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_12065 831c56b7451e598c98b4107b22245d46 233 SUPERFAMILY SSF52540 2 217 3.37E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_12065 831c56b7451e598c98b4107b22245d46 233 Gene3D G3DSA:3.40.50.300 1 230 9.8E-60 T 13-10-2018 AP3564_12015 961755f6ddb30120be0cdb11fd3d1ba2 421 Pfam PF01546 Peptidase family M20/M25/M40 83 413 3.0E-32 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 AP3564_12015 961755f6ddb30120be0cdb11fd3d1ba2 421 Gene3D G3DSA:3.30.70.360 203 320 1.6E-27 T 13-10-2018 AP3564_12015 961755f6ddb30120be0cdb11fd3d1ba2 421 SUPERFAMILY SSF55031 212 305 1.08E-7 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain AP3564_12015 961755f6ddb30120be0cdb11fd3d1ba2 421 Gene3D G3DSA:3.40.630.10 6 192 2.1E-45 T 13-10-2018 AP3564_12015 961755f6ddb30120be0cdb11fd3d1ba2 421 SUPERFAMILY SSF53187 2 417 1.11E-63 T 13-10-2018 AP3564_12015 961755f6ddb30120be0cdb11fd3d1ba2 421 TIGRFAM TIGR01910 DapE-ArgE: peptidase, ArgE/DapE family 18 407 4.0E-107 T 13-10-2018 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase AP3564_12015 961755f6ddb30120be0cdb11fd3d1ba2 421 Pfam PF07687 Peptidase dimerisation domain 185 305 2.7E-23 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain AP3564_12015 961755f6ddb30120be0cdb11fd3d1ba2 421 Gene3D G3DSA:3.40.630.10 321 421 1.4E-12 T 13-10-2018 AP3564_07155 76fd95c31ac549cfd6cdfce505c9a7d7 328 Gene3D G3DSA:3.40.50.2300 52 306 2.0E-87 T 13-10-2018 AP3564_07155 76fd95c31ac549cfd6cdfce505c9a7d7 328 Gene3D G3DSA:3.40.50.2300 147 314 2.0E-87 T 13-10-2018 AP3564_07155 76fd95c31ac549cfd6cdfce505c9a7d7 328 SUPERFAMILY SSF53822 41 317 1.26E-80 T 13-10-2018 IPR028082 Periplasmic binding protein-like I AP3564_07155 76fd95c31ac549cfd6cdfce505c9a7d7 328 Pfam PF13407 Periplasmic binding protein domain 45 298 3.3E-67 T 13-10-2018 IPR025997 Periplasmic binding protein AP3564_02595 176280e7b19e7d3083749cd7abb8bdd0 496 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 251 4.8E-92 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AP3564_02595 176280e7b19e7d3083749cd7abb8bdd0 496 Hamap MF_00186 Glycerol kinase [glpK]. 2 496 60.852 T 13-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 AP3564_02595 176280e7b19e7d3083749cd7abb8bdd0 496 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 134 146 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AP3564_02595 176280e7b19e7d3083749cd7abb8bdd0 496 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 260 449 7.0E-66 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AP3564_02595 176280e7b19e7d3083749cd7abb8bdd0 496 Gene3D G3DSA:3.30.420.40 253 496 6.1E-94 T 13-10-2018 AP3564_02595 176280e7b19e7d3083749cd7abb8bdd0 496 SUPERFAMILY SSF53067 4 254 4.5E-98 T 13-10-2018 AP3564_02595 176280e7b19e7d3083749cd7abb8bdd0 496 Gene3D G3DSA:3.30.420.40 1 252 9.7E-113 T 13-10-2018 AP3564_02595 176280e7b19e7d3083749cd7abb8bdd0 496 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 361 381 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AP3564_02595 176280e7b19e7d3083749cd7abb8bdd0 496 SUPERFAMILY SSF53067 254 493 1.47E-88 T 13-10-2018 AP3564_02595 176280e7b19e7d3083749cd7abb8bdd0 496 PIRSF PIRSF000538 2 495 9.0E-182 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AP3564_02595 176280e7b19e7d3083749cd7abb8bdd0 496 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 4 493 1.0E-231 T 13-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 AP3564_12125 39c12cc4690c8aeb6f06188d741d290f 265 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_12125 39c12cc4690c8aeb6f06188d741d290f 265 Gene3D G3DSA:3.40.50.300 1 257 3.1E-59 T 13-10-2018 AP3564_12125 39c12cc4690c8aeb6f06188d741d290f 265 SMART SM00382 27 219 5.0E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_12125 39c12cc4690c8aeb6f06188d741d290f 265 Pfam PF00005 ABC transporter 18 169 3.7E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_12125 39c12cc4690c8aeb6f06188d741d290f 265 SUPERFAMILY SSF52540 2 233 1.39E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_10800 0b624d9eeb0d56a8ad332f7732eb2861 470 Gene3D G3DSA:3.30.465.40 2 236 1.2E-83 T 13-10-2018 AP3564_10800 0b624d9eeb0d56a8ad332f7732eb2861 470 SUPERFAMILY SSF56176 5 217 1.5E-77 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AP3564_10800 0b624d9eeb0d56a8ad332f7732eb2861 470 TIGRFAM TIGR00387 glcD: glycolate oxidase, subunit GlcD 44 456 1.4E-184 T 13-10-2018 IPR004490 Glycolate oxidase subunit GlcD GO:0008891|GO:0009339 AP3564_10800 0b624d9eeb0d56a8ad332f7732eb2861 470 Pfam PF01565 FAD binding domain 41 180 2.2E-44 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AP3564_10800 0b624d9eeb0d56a8ad332f7732eb2861 470 SUPERFAMILY SSF55103 220 460 5.72E-69 T 13-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AP3564_10800 0b624d9eeb0d56a8ad332f7732eb2861 470 Pfam PF02913 FAD linked oxidases, C-terminal domain 216 457 2.2E-74 T 13-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 AP3564_10800 0b624d9eeb0d56a8ad332f7732eb2861 470 Gene3D G3DSA:3.30.70.2740 336 417 5.6E-14 T 13-10-2018 AP3564_10800 0b624d9eeb0d56a8ad332f7732eb2861 470 Gene3D G3DSA:1.10.45.10 418 457 2.2E-12 T 13-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 AP3564_15400 caa33fb3d3d687edb5d1d5708bb88a44 988 SUPERFAMILY SSF52540 9 282 3.19E-17 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_15400 caa33fb3d3d687edb5d1d5708bb88a44 988 Pfam PF04851 Type III restriction enzyme, res subunit 10 253 1.1E-14 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AP3564_15400 caa33fb3d3d687edb5d1d5708bb88a44 988 SUPERFAMILY SSF52540 83 574 3.65E-10 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_14815 37ade21c77e70968975c487c35b96a90 669 TIGRFAM TIGR00232 tktlase_bact: transketolase 10 667 0.0 T 13-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 AP3564_14815 37ade21c77e70968975c487c35b96a90 669 SUPERFAMILY SSF52518 343 528 5.89E-71 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold AP3564_14815 37ade21c77e70968975c487c35b96a90 669 SUPERFAMILY SSF52518 10 327 3.49E-119 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold AP3564_14815 37ade21c77e70968975c487c35b96a90 669 Pfam PF02779 Transketolase, pyrimidine binding domain 355 526 1.5E-47 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AP3564_14815 37ade21c77e70968975c487c35b96a90 669 SMART SM00861 356 528 1.2E-74 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AP3564_14815 37ade21c77e70968975c487c35b96a90 669 Gene3D G3DSA:3.40.50.970 6 332 5.5E-131 T 13-10-2018 AP3564_14815 37ade21c77e70968975c487c35b96a90 669 SUPERFAMILY SSF52922 533 668 2.62E-41 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AP3564_14815 37ade21c77e70968975c487c35b96a90 669 Gene3D G3DSA:3.40.50.970 333 540 9.2E-84 T 13-10-2018 AP3564_14815 37ade21c77e70968975c487c35b96a90 669 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 8 340 3.0E-158 T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AP3564_14815 37ade21c77e70968975c487c35b96a90 669 ProSitePatterns PS00802 Transketolase signature 2. 469 485 - T 13-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AP3564_14815 37ade21c77e70968975c487c35b96a90 669 Pfam PF02780 Transketolase, C-terminal domain 550 659 5.4E-9 T 13-10-2018 IPR033248 Transketolase, C-terminal domain AP3564_14815 37ade21c77e70968975c487c35b96a90 669 Gene3D G3DSA:3.40.50.920 542 668 7.0E-43 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AP3564_14815 37ade21c77e70968975c487c35b96a90 669 ProSitePatterns PS00801 Transketolase signature 1. 15 35 - T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AP3564_14220 cf857d1411ee878777c12e0a6d840760 263 Pfam PF08378 Nuclease-related domain 31 145 7.2E-32 T 13-10-2018 IPR011528 Nuclease-related domain, NERD AP3564_14220 cf857d1411ee878777c12e0a6d840760 263 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 228 262 2.1E-12 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 AP3564_14220 cf857d1411ee878777c12e0a6d840760 263 Gene3D G3DSA:3.30.65.10 216 263 2.5E-9 T 13-10-2018 AP3564_14220 cf857d1411ee878777c12e0a6d840760 263 SUPERFAMILY SSF57783 218 261 1.07E-11 T 13-10-2018 AP3564_05715 1358f4cb0275b78a5e18d0cec5f00fc1 395 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 395 61.616 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AP3564_05715 1358f4cb0275b78a5e18d0cec5f00fc1 395 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 146 5.7E-16 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AP3564_05715 1358f4cb0275b78a5e18d0cec5f00fc1 395 Pfam PF03143 Elongation factor Tu C-terminal domain 299 393 5.0E-34 T 13-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal AP3564_05715 1358f4cb0275b78a5e18d0cec5f00fc1 395 Pfam PF03144 Elongation factor Tu domain 2 225 294 1.8E-19 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AP3564_05715 1358f4cb0275b78a5e18d0cec5f00fc1 395 Pfam PF00009 Elongation factor Tu GTP binding domain 10 201 1.7E-62 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AP3564_05715 1358f4cb0275b78a5e18d0cec5f00fc1 395 SUPERFAMILY SSF52540 9 226 6.04E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_05715 1358f4cb0275b78a5e18d0cec5f00fc1 395 Gene3D G3DSA:3.40.50.300 1 203 5.7E-73 T 13-10-2018 AP3564_05715 1358f4cb0275b78a5e18d0cec5f00fc1 395 Gene3D G3DSA:2.40.30.10 339 394 3.0E-27 T 13-10-2018 AP3564_05715 1358f4cb0275b78a5e18d0cec5f00fc1 395 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 394 7.2E-239 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AP3564_05715 1358f4cb0275b78a5e18d0cec5f00fc1 395 Gene3D G3DSA:2.40.30.10 206 335 5.7E-56 T 13-10-2018 AP3564_05715 1358f4cb0275b78a5e18d0cec5f00fc1 395 PRINTS PR00315 GTP-binding elongation factor signature 94 105 3.1E-25 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AP3564_05715 1358f4cb0275b78a5e18d0cec5f00fc1 395 PRINTS PR00315 GTP-binding elongation factor signature 58 66 3.1E-25 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AP3564_05715 1358f4cb0275b78a5e18d0cec5f00fc1 395 PRINTS PR00315 GTP-binding elongation factor signature 131 140 3.1E-25 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AP3564_05715 1358f4cb0275b78a5e18d0cec5f00fc1 395 PRINTS PR00315 GTP-binding elongation factor signature 78 88 3.1E-25 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AP3564_05715 1358f4cb0275b78a5e18d0cec5f00fc1 395 PRINTS PR00315 GTP-binding elongation factor signature 14 27 3.1E-25 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AP3564_05715 1358f4cb0275b78a5e18d0cec5f00fc1 395 SUPERFAMILY SSF50447 203 302 5.7E-32 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AP3564_05715 1358f4cb0275b78a5e18d0cec5f00fc1 395 SUPERFAMILY SSF50465 303 395 1.32E-35 T 13-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal AP3564_05715 1358f4cb0275b78a5e18d0cec5f00fc1 395 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site AP3564_06375 6ef3819a5ebff12ad740a72a6fa90c16 606 Pfam PF00672 HAMP domain 326 372 3.2E-13 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AP3564_06375 6ef3819a5ebff12ad740a72a6fa90c16 606 Gene3D G3DSA:3.30.565.10 442 597 2.5E-16 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_06375 6ef3819a5ebff12ad740a72a6fa90c16 606 SMART SM00387 478 592 0.0026 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_06375 6ef3819a5ebff12ad740a72a6fa90c16 606 Gene3D G3DSA:1.10.8.500 323 375 1.7E-11 T 13-10-2018 AP3564_06375 6ef3819a5ebff12ad740a72a6fa90c16 606 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 486 590 1.4E-7 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_06375 6ef3819a5ebff12ad740a72a6fa90c16 606 Gene3D G3DSA:3.30.450.20 185 302 8.1E-8 T 13-10-2018 AP3564_06375 6ef3819a5ebff12ad740a72a6fa90c16 606 SUPERFAMILY SSF158472 326 375 1.12E-12 T 13-10-2018 AP3564_06375 6ef3819a5ebff12ad740a72a6fa90c16 606 SUPERFAMILY SSF55874 443 589 8.64E-18 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_06375 6ef3819a5ebff12ad740a72a6fa90c16 606 Pfam PF06580 Histidine kinase 388 467 7.1E-26 T 13-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 AP3564_06375 6ef3819a5ebff12ad740a72a6fa90c16 606 SMART SM00304 324 376 9.0E-15 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AP3564_06375 6ef3819a5ebff12ad740a72a6fa90c16 606 Pfam PF02743 Cache domain 46 285 7.5E-23 T 13-10-2018 IPR033479 Double Cache domain 1 AP3564_08970 2ff6f12b5c34a0e0d451791deec09c9d 144 SUPERFAMILY SSF82649 2 140 2.01E-51 T 13-10-2018 AP3564_08970 2ff6f12b5c34a0e0d451791deec09c9d 144 Pfam PF01592 NifU-like N terminal domain 10 127 2.1E-37 T 13-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 AP3564_08970 2ff6f12b5c34a0e0d451791deec09c9d 144 Gene3D G3DSA:3.90.1010.10 2 143 1.7E-62 T 13-10-2018 AP3564_08970 2ff6f12b5c34a0e0d451791deec09c9d 144 TIGRFAM TIGR01994 SUF_scaf_2: SUF system FeS assembly protein, NifU family 6 139 9.4E-58 T 13-10-2018 AP3564_13405 2838157decc53e0ce4d06e2370da2cb9 217 Pfam PF03475 3-alpha domain 174 216 1.6E-14 T 13-10-2018 IPR005163 3-alpha domain AP3564_13405 2838157decc53e0ce4d06e2370da2cb9 217 SUPERFAMILY SSF50800 5 216 3.82E-72 T 13-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily AP3564_13405 2838157decc53e0ce4d06e2370da2cb9 217 Pfam PF03473 MOSC domain 54 160 1.6E-24 T 13-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 AP3564_13405 2838157decc53e0ce4d06e2370da2cb9 217 Gene3D G3DSA:2.40.33.20 1 217 1.1E-76 T 13-10-2018 AP3564_00185 a8868bd8e9e81f9fec1fa65e089dbfcb 576 Pfam PF12558 ATP-binding cassette cobalt transporter 237 309 3.9E-21 T 13-10-2018 IPR022216 Putative ABC cobalt transporter AP3564_00185 a8868bd8e9e81f9fec1fa65e089dbfcb 576 Pfam PF00005 ABC transporter 319 464 5.0E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_00185 a8868bd8e9e81f9fec1fa65e089dbfcb 576 Gene3D G3DSA:3.40.50.300 299 553 2.2E-62 T 13-10-2018 AP3564_00185 a8868bd8e9e81f9fec1fa65e089dbfcb 576 SUPERFAMILY SSF52540 5 237 3.59E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_00185 a8868bd8e9e81f9fec1fa65e089dbfcb 576 SUPERFAMILY SSF52540 290 528 1.22E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_00185 a8868bd8e9e81f9fec1fa65e089dbfcb 576 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_00185 a8868bd8e9e81f9fec1fa65e089dbfcb 576 Pfam PF00005 ABC transporter 23 173 5.4E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_00185 a8868bd8e9e81f9fec1fa65e089dbfcb 576 SMART SM00382 327 512 1.8E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_00185 a8868bd8e9e81f9fec1fa65e089dbfcb 576 SMART SM00382 32 224 2.0E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_00185 a8868bd8e9e81f9fec1fa65e089dbfcb 576 Gene3D G3DSA:3.40.50.300 2 262 4.4E-65 T 13-10-2018 AP3564_00185 a8868bd8e9e81f9fec1fa65e089dbfcb 576 ProSitePatterns PS00211 ABC transporters family signature. 436 450 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_14265 9afe9cef8a6216ed1368594c184d3e46 302 SUPERFAMILY SSF51569 4 292 6.89E-72 T 13-10-2018 AP3564_14265 9afe9cef8a6216ed1368594c184d3e46 302 Pfam PF00682 HMGL-like 8 279 1.3E-51 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 AP3564_14265 9afe9cef8a6216ed1368594c184d3e46 302 Gene3D G3DSA:3.20.20.70 4 295 2.9E-129 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_08640 d929f2dad4525579bdb36a171736ef62 375 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 3 370 1.5E-129 T 13-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AP3564_08640 d929f2dad4525579bdb36a171736ef62 375 PIRSF PIRSF006078 1 375 1.6E-123 T 13-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AP3564_08640 d929f2dad4525579bdb36a171736ef62 375 SUPERFAMILY SSF110738 1 370 8.5E-120 T 13-10-2018 IPR036129 Glycerate kinase superfamily GO:0008887|GO:0031388 AP3564_08640 d929f2dad4525579bdb36a171736ef62 375 Gene3D G3DSA:3.90.1510.10 42 274 4.9E-129 T 13-10-2018 IPR018193 Glycerate kinase, flavodoxin-like fold GO:0008887|GO:0031388 AP3564_08640 d929f2dad4525579bdb36a171736ef62 375 Gene3D G3DSA:3.40.50.10350 1 359 4.9E-129 T 13-10-2018 IPR018197 Glycerate kinase, restriction-enzyme-like fold AP3564_08640 d929f2dad4525579bdb36a171736ef62 375 Pfam PF02595 Glycerate kinase family 3 370 5.6E-134 T 13-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AP3564_03910 56c645347724199c994e26672f7234f3 70 ProSitePatterns PS00605 ATP synthase c subunit signature. 33 54 - T 13-10-2018 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03910 56c645347724199c994e26672f7234f3 70 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 13 66 1.7E-24 T 13-10-2018 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 AP3564_03910 56c645347724199c994e26672f7234f3 70 PRINTS PR00124 ATP synthase C subunit signature 43 68 1.1E-19 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03910 56c645347724199c994e26672f7234f3 70 PRINTS PR00124 ATP synthase C subunit signature 26 41 1.1E-19 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03910 56c645347724199c994e26672f7234f3 70 PRINTS PR00124 ATP synthase C subunit signature 5 24 1.1E-19 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03910 56c645347724199c994e26672f7234f3 70 Hamap MF_01396 ATP synthase subunit c [atpH]. 3 68 16.305 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03910 56c645347724199c994e26672f7234f3 70 Pfam PF00137 ATP synthase subunit C 4 66 4.1E-15 T 13-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 AP3564_03910 56c645347724199c994e26672f7234f3 70 SUPERFAMILY SSF81333 3 68 1.96E-19 T 13-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily AP3564_03910 56c645347724199c994e26672f7234f3 70 Gene3D G3DSA:1.20.20.10 1 69 1.1E-29 T 13-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_18855 4858138a90aaea3bcb0292fa8d54f35e 147 PIRSF PIRSF025624 1 146 3.2E-60 T 13-10-2018 IPR008310 UPF0735 ACT domain-containing protein AP3564_18855 4858138a90aaea3bcb0292fa8d54f35e 147 Pfam PF01842 ACT domain 70 121 1.7E-7 T 13-10-2018 IPR002912 ACT domain AP3564_18855 4858138a90aaea3bcb0292fa8d54f35e 147 Gene3D G3DSA:3.30.70.260 69 145 6.7E-7 T 13-10-2018 AP3564_18855 4858138a90aaea3bcb0292fa8d54f35e 147 SUPERFAMILY SSF55021 70 143 3.82E-10 T 13-10-2018 AP3564_18855 4858138a90aaea3bcb0292fa8d54f35e 147 Hamap MF_00707 UPF0735 ACT domain-containing protein . 2 146 32.181 T 13-10-2018 IPR008310 UPF0735 ACT domain-containing protein AP3564_03175 fcb08a935e09c8a3db48c1d1f8904ea5 472 Pfam PF01593 Flavin containing amine oxidoreductase 13 464 3.7E-63 T 13-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 AP3564_03175 fcb08a935e09c8a3db48c1d1f8904ea5 472 Gene3D G3DSA:3.50.50.60 7 455 2.1E-141 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_03175 fcb08a935e09c8a3db48c1d1f8904ea5 472 SUPERFAMILY SSF51905 4 463 5.18E-48 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_03175 fcb08a935e09c8a3db48c1d1f8904ea5 472 SUPERFAMILY SSF54373 307 414 2.59E-32 T 13-10-2018 AP3564_03175 fcb08a935e09c8a3db48c1d1f8904ea5 472 TIGRFAM TIGR00562 proto_IX_ox: protoporphyrinogen oxidase 3 468 3.0E-134 T 13-10-2018 IPR004572 Protoporphyrinogen oxidase GO:0004729|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.4|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AP3564_03175 fcb08a935e09c8a3db48c1d1f8904ea5 472 Gene3D G3DSA:3.90.660.20 42 413 2.1E-141 T 13-10-2018 AP3564_03175 fcb08a935e09c8a3db48c1d1f8904ea5 472 Gene3D G3DSA:1.10.3110.10 108 201 2.1E-141 T 13-10-2018 AP3564_03880 4a89ec158090be76c3df96d81662e3c5 137 Gene3D G3DSA:1.20.5.440 89 135 1.5E-18 T 13-10-2018 AP3564_03880 4a89ec158090be76c3df96d81662e3c5 137 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 9 88 6.0E-33 T 13-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03880 4a89ec158090be76c3df96d81662e3c5 137 SUPERFAMILY SSF46604 86 134 3.4E-8 T 13-10-2018 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03880 4a89ec158090be76c3df96d81662e3c5 137 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 5 82 3.6E-29 T 13-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03880 4a89ec158090be76c3df96d81662e3c5 137 Gene3D G3DSA:2.60.15.10 1 88 1.3E-33 T 13-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03880 4a89ec158090be76c3df96d81662e3c5 137 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 3 133 1.3E-40 T 13-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03880 4a89ec158090be76c3df96d81662e3c5 137 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 2 132 24.469 T 13-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03880 4a89ec158090be76c3df96d81662e3c5 137 SUPERFAMILY SSF51344 3 84 4.05E-24 T 13-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03880 4a89ec158090be76c3df96d81662e3c5 137 Pfam PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain 86 134 3.1E-17 T 13-10-2018 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain AP3564_17650 1f448cdf751307535d0eac61c4987512 322 SUPERFAMILY SSF56281 5 303 1.31E-45 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AP3564_17650 1f448cdf751307535d0eac61c4987512 322 Pfam PF00753 Metallo-beta-lactamase superfamily 21 231 2.2E-19 T 13-10-2018 IPR001279 Metallo-beta-lactamase AP3564_17650 1f448cdf751307535d0eac61c4987512 322 Gene3D G3DSA:3.60.15.10 4 258 2.0E-48 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AP3564_17650 1f448cdf751307535d0eac61c4987512 322 SMART SM00849 20 231 1.2E-23 T 13-10-2018 IPR001279 Metallo-beta-lactamase AP3564_08005 458c0e4844e238eff3bddde12905d75d 419 SUPERFAMILY SSF56672 21 356 2.89E-61 T 13-10-2018 AP3564_08005 458c0e4844e238eff3bddde12905d75d 419 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 66 272 2.0E-47 T 13-10-2018 IPR000477 Reverse transcriptase domain AP3564_08005 458c0e4844e238eff3bddde12905d75d 419 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 129 147 7.4E-7 T 13-10-2018 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 AP3564_08005 458c0e4844e238eff3bddde12905d75d 419 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 61 74 7.4E-7 T 13-10-2018 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 AP3564_08005 458c0e4844e238eff3bddde12905d75d 419 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 187 200 7.4E-7 T 13-10-2018 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 AP3564_08005 458c0e4844e238eff3bddde12905d75d 419 TIGRFAM TIGR04416 group_II_RT_mat: group II intron reverse transcriptase/maturase 10 353 1.0E-132 T 13-10-2018 IPR030931 Group II intron reverse transcriptase/maturase AP3564_08005 458c0e4844e238eff3bddde12905d75d 419 Pfam PF08388 Group II intron, maturase-specific domain 288 360 6.7E-21 T 13-10-2018 IPR013597 Group II intron, maturase-specific AP3564_17535 bb98d4801652b705e8167d430befb9a3 434 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 345 418 6.3E-24 T 13-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AP3564_17535 bb98d4801652b705e8167d430befb9a3 434 Pfam PF02885 Glycosyl transferase family, helical bundle domain 4 66 1.3E-26 T 13-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 AP3564_17535 bb98d4801652b705e8167d430befb9a3 434 SUPERFAMILY SSF54680 333 433 1.01E-27 T 13-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AP3564_17535 bb98d4801652b705e8167d430befb9a3 434 TIGRFAM TIGR02644 Y_phosphoryl: pyrimidine-nucleoside phosphorylase 3 417 1.6E-182 T 13-10-2018 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic GO:0006213|GO:0016154 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181|Reactome: R-HSA-73614|Reactome: R-HSA-73621 AP3564_17535 bb98d4801652b705e8167d430befb9a3 434 PIRSF PIRSF000478 1 433 8.7E-173 T 13-10-2018 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AP3564_17535 bb98d4801652b705e8167d430befb9a3 434 Gene3D G3DSA:3.40.1030.10 77 330 5.9E-157 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 AP3564_17535 bb98d4801652b705e8167d430befb9a3 434 Gene3D G3DSA:3.90.1170.30 331 420 5.9E-157 T 13-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AP3564_17535 bb98d4801652b705e8167d430befb9a3 434 Gene3D G3DSA:1.20.970.10 1 67 4.2E-31 T 13-10-2018 AP3564_17535 bb98d4801652b705e8167d430befb9a3 434 SUPERFAMILY SSF52418 69 329 1.14E-96 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 AP3564_17535 bb98d4801652b705e8167d430befb9a3 434 SMART SM00941 345 418 2.3E-27 T 13-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AP3564_17535 bb98d4801652b705e8167d430befb9a3 434 SUPERFAMILY SSF47648 1 69 2.88E-24 T 13-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 AP3564_17535 bb98d4801652b705e8167d430befb9a3 434 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 110 125 - T 13-10-2018 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AP3564_17535 bb98d4801652b705e8167d430befb9a3 434 Pfam PF00591 Glycosyl transferase family, a/b domain 78 306 6.0E-49 T 13-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AP3564_03860 86f7eb332e69548ebf79d69b73e1bcd3 339 TIGRFAM TIGR02669 SpoIID_LytB: SpoIID/LytB domain 67 326 9.8E-75 T 13-10-2018 IPR013486 Sporulation stage II protein D, amidase enhancer LytB GO:0030435 AP3564_03860 86f7eb332e69548ebf79d69b73e1bcd3 339 TIGRFAM TIGR02870 spore_II_D: stage II sporulation protein D 9 327 5.7E-131 T 13-10-2018 IPR014225 Sporulation stage II, protein D firmicutes AP3564_03860 86f7eb332e69548ebf79d69b73e1bcd3 339 Pfam PF08486 Stage II sporulation protein 62 167 1.6E-26 T 13-10-2018 IPR013693 Sporulation stage II protein D, amidase enhancer LytB N-terminal AP3564_11830 cfff9fbd26e4b50f9e60d26fc731a8af 689 Pfam PF00367 phosphotransferase system, EIIB 437 469 4.0E-14 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AP3564_11830 cfff9fbd26e4b50f9e60d26fc731a8af 689 SUPERFAMILY SSF51261 535 686 1.31E-54 T 13-10-2018 IPR011055 Duplicated hybrid motif AP3564_11830 cfff9fbd26e4b50f9e60d26fc731a8af 689 SUPERFAMILY SSF55604 436 508 1.1E-21 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 AP3564_11830 cfff9fbd26e4b50f9e60d26fc731a8af 689 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 605 617 - T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 AP3564_11830 cfff9fbd26e4b50f9e60d26fc731a8af 689 Gene3D G3DSA:3.30.1360.60 432 510 3.9E-30 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 AP3564_11830 cfff9fbd26e4b50f9e60d26fc731a8af 689 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 544 663 4.6E-47 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 AP3564_11830 cfff9fbd26e4b50f9e60d26fc731a8af 689 TIGRFAM TIGR00852 pts-Glc: PTS system, maltose and glucose-specific subfamily, IIC component 64 357 1.3E-89 T 13-10-2018 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component GO:0008982|GO:0009401|GO:0016021 AP3564_11830 cfff9fbd26e4b50f9e60d26fc731a8af 689 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 543 665 4.5E-50 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 AP3564_11830 cfff9fbd26e4b50f9e60d26fc731a8af 689 Gene3D G3DSA:2.70.70.10 529 689 2.6E-60 T 13-10-2018 IPR011055 Duplicated hybrid motif AP3564_11830 cfff9fbd26e4b50f9e60d26fc731a8af 689 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 405 493 1.1E-28 T 13-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AP3564_11830 cfff9fbd26e4b50f9e60d26fc731a8af 689 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 447 464 - T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AP3564_11830 cfff9fbd26e4b50f9e60d26fc731a8af 689 Pfam PF02378 Phosphotransferase system, EIIC 14 346 2.6E-98 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AP3564_11830 cfff9fbd26e4b50f9e60d26fc731a8af 689 TIGRFAM TIGR02002 PTS-II-BC-glcB: PTS system, glucose-specific IIBC component 2 509 7.9E-259 T 13-10-2018 IPR011299 PTS system glucose-specific IIBC component GO:0005355|GO:0016021|GO:1904659 AP3564_02895 5d0a2ee4da5252b45506117cb0d6714a 342 Pfam PF01594 AI-2E family transporter 7 329 1.9E-57 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like AP3564_02895 5d0a2ee4da5252b45506117cb0d6714a 342 TIGRFAM TIGR02872 spore_ytvI: sporulation integral membrane protein YtvI 7 336 3.0E-98 T 13-10-2018 IPR014227 Putative transport protein YtvI-like AP3564_07640 244fd481133e47c7b3c578ba57f35e0f 212 Pfam PF01205 Uncharacterized protein family UPF0029 19 124 1.0E-33 T 13-10-2018 IPR001498 Impact, N-terminal AP3564_07640 244fd481133e47c7b3c578ba57f35e0f 212 Pfam PF09186 Domain of unknown function (DUF1949) 141 195 1.1E-17 T 13-10-2018 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal AP3564_07640 244fd481133e47c7b3c578ba57f35e0f 212 Gene3D G3DSA:3.30.230.30 1 133 5.3E-53 T 13-10-2018 IPR036956 Impact, N-terminal domain superfamily AP3564_07640 244fd481133e47c7b3c578ba57f35e0f 212 TIGRFAM TIGR00257 IMPACT_YIGZ: uncharacterized protein, YigZ family 1 202 7.2E-76 T 13-10-2018 IPR015796 Impact family, bacterial/archaeal AP3564_07640 244fd481133e47c7b3c578ba57f35e0f 212 SUPERFAMILY SSF54211 2 131 3.79E-45 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AP3564_07640 244fd481133e47c7b3c578ba57f35e0f 212 SUPERFAMILY SSF54980 135 200 1.94E-11 T 13-10-2018 IPR035647 EF-G domain III/V-like AP3564_07640 244fd481133e47c7b3c578ba57f35e0f 212 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 79 108 - T 13-10-2018 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site AP3564_13355 42961c7101ab9af46284855b4d808f26 170 SUPERFAMILY SSF55785 13 127 5.41E-17 T 13-10-2018 IPR035965 PAS domain superfamily AP3564_13355 42961c7101ab9af46284855b4d808f26 170 Gene3D G3DSA:3.30.450.20 11 133 2.2E-18 T 13-10-2018 AP3564_13355 42961c7101ab9af46284855b4d808f26 170 SMART SM00091 25 91 3.9E-9 T 13-10-2018 IPR000014 PAS domain AP3564_13355 42961c7101ab9af46284855b4d808f26 170 Pfam PF04397 LytTr DNA-binding domain 119 167 2.3E-6 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 AP3564_13355 42961c7101ab9af46284855b4d808f26 170 Pfam PF13426 PAS domain 36 125 3.2E-11 T 13-10-2018 IPR000014 PAS domain AP3564_13355 42961c7101ab9af46284855b4d808f26 170 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 26 132 5.5E-14 T 13-10-2018 IPR000014 PAS domain AP3564_11780 f5d8a6adbe0290465a6e9ad8f857f530 182 ProSitePatterns PS00194 Thioredoxin family active site. 74 92 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AP3564_11780 f5d8a6adbe0290465a6e9ad8f857f530 182 SUPERFAMILY SSF52833 49 178 4.9E-44 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AP3564_11780 f5d8a6adbe0290465a6e9ad8f857f530 182 Gene3D G3DSA:3.40.30.10 34 181 1.3E-47 T 13-10-2018 AP3564_11780 f5d8a6adbe0290465a6e9ad8f857f530 182 Pfam PF00578 AhpC/TSA family 49 163 6.4E-33 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AP3564_04280 8bee6a463e8e99b4c6a9030767b0f375 268 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 88 105 7.1E-42 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AP3564_04280 8bee6a463e8e99b4c6a9030767b0f375 268 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 31 52 7.1E-42 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AP3564_04280 8bee6a463e8e99b4c6a9030767b0f375 268 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 163 180 7.1E-42 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AP3564_04280 8bee6a463e8e99b4c6a9030767b0f375 268 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 119 133 7.1E-42 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AP3564_04280 8bee6a463e8e99b4c6a9030767b0f375 268 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 18 25 7.1E-42 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AP3564_04280 8bee6a463e8e99b4c6a9030767b0f375 268 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 62 70 7.1E-42 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AP3564_04280 8bee6a463e8e99b4c6a9030767b0f375 268 PIRSF PIRSF000513 4 266 1.9E-94 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AP3564_04280 8bee6a463e8e99b4c6a9030767b0f375 268 SUPERFAMILY SSF53613 9 261 2.03E-63 T 13-10-2018 IPR029056 Ribokinase-like AP3564_04280 8bee6a463e8e99b4c6a9030767b0f375 268 Hamap MF_00228 Hydroxyethylthiazole kinase [thiM]. 12 260 33.557 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AP3564_04280 8bee6a463e8e99b4c6a9030767b0f375 268 Gene3D G3DSA:3.40.1190.20 1 267 7.2E-99 T 13-10-2018 IPR029056 Ribokinase-like AP3564_04280 8bee6a463e8e99b4c6a9030767b0f375 268 TIGRFAM TIGR00694 thiM: hydroxyethylthiazole kinase 10 256 1.3E-97 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AP3564_04280 8bee6a463e8e99b4c6a9030767b0f375 268 Pfam PF02110 Hydroxyethylthiazole kinase family 10 255 3.0E-93 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AP3564_18725 3c016c435708a638fe89083ac99bbca3 727 SMART SM00471 46 158 1.1E-8 T 13-10-2018 IPR003607 HD/PDEase domain AP3564_18725 3c016c435708a638fe89083ac99bbca3 727 Gene3D G3DSA:3.30.70.260 648 727 1.1E-17 T 13-10-2018 AP3564_18725 3c016c435708a638fe89083ac99bbca3 727 SUPERFAMILY SSF81301 197 367 4.58E-66 T 13-10-2018 AP3564_18725 3c016c435708a638fe89083ac99bbca3 727 Pfam PF04607 Region found in RelA / SpoT proteins 240 350 1.3E-39 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 AP3564_18725 3c016c435708a638fe89083ac99bbca3 727 SMART SM00954 240 350 7.2E-69 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 AP3564_18725 3c016c435708a638fe89083ac99bbca3 727 Pfam PF13328 HD domain 31 180 1.6E-52 T 13-10-2018 IPR003607 HD/PDEase domain AP3564_18725 3c016c435708a638fe89083ac99bbca3 727 Gene3D G3DSA:3.10.20.30 384 456 4.5E-34 T 13-10-2018 IPR012675 Beta-grasp domain superfamily AP3564_18725 3c016c435708a638fe89083ac99bbca3 727 Pfam PF02824 TGS domain 391 450 5.5E-24 T 13-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 AP3564_18725 3c016c435708a638fe89083ac99bbca3 727 SUPERFAMILY SSF55021 650 727 1.34E-12 T 13-10-2018 AP3564_18725 3c016c435708a638fe89083ac99bbca3 727 Gene3D G3DSA:1.10.3210.10 1 196 2.6E-91 T 13-10-2018 AP3564_18725 3c016c435708a638fe89083ac99bbca3 727 Gene3D G3DSA:3.30.460.10 198 330 1.1E-53 T 13-10-2018 AP3564_18725 3c016c435708a638fe89083ac99bbca3 727 SUPERFAMILY SSF109604 8 196 1.44E-77 T 13-10-2018 AP3564_18725 3c016c435708a638fe89083ac99bbca3 727 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 31 724 1.4E-260 T 13-10-2018 IPR004811 RelA/SpoT family GO:0015969 AP3564_18725 3c016c435708a638fe89083ac99bbca3 727 Pfam PF13291 ACT domain 648 724 2.0E-21 T 13-10-2018 IPR002912 ACT domain AP3564_18725 3c016c435708a638fe89083ac99bbca3 727 SUPERFAMILY SSF81271 378 450 8.34E-24 T 13-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 AP3564_05165 4aa97fec97cbd2e89e8bbe270e1bafb1 204 Pfam PF01386 Ribosomal L25p family 5 91 1.0E-22 T 13-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 AP3564_05165 4aa97fec97cbd2e89e8bbe270e1bafb1 204 SUPERFAMILY SSF50715 10 181 1.1E-55 T 13-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AP3564_05165 4aa97fec97cbd2e89e8bbe270e1bafb1 204 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 7 91 4.0E-19 T 13-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 AP3564_05165 4aa97fec97cbd2e89e8bbe270e1bafb1 204 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 6 179 3.7E-55 T 13-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 AP3564_05165 4aa97fec97cbd2e89e8bbe270e1bafb1 204 Gene3D G3DSA:2.40.240.10 2 94 1.1E-26 T 13-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AP3564_05165 4aa97fec97cbd2e89e8bbe270e1bafb1 204 Gene3D G3DSA:2.170.120.20 96 187 4.2E-29 T 13-10-2018 IPR037121 Ribosomal protein L25, C-terminal AP3564_05165 4aa97fec97cbd2e89e8bbe270e1bafb1 204 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 3 182 26.91 T 13-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 AP3564_05165 4aa97fec97cbd2e89e8bbe270e1bafb1 204 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 99 181 6.8E-28 T 13-10-2018 IPR020057 Ribosomal protein L25, beta domain AP3564_07710 7252982e99b869068ae7cc81a39cf1f2 76 Gene3D G3DSA:3.30.70.1680 1 62 5.1E-28 T 13-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 AP3564_07710 7252982e99b869068ae7cc81a39cf1f2 76 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 48 2.0E-8 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 AP3564_07710 7252982e99b869068ae7cc81a39cf1f2 76 SUPERFAMILY SSF117130 2 55 6.28E-20 T 13-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 AP3564_07710 7252982e99b869068ae7cc81a39cf1f2 76 Hamap MF_00167 Translational regulator CsrA [csrA]. 1 76 17.134 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 AP3564_07710 7252982e99b869068ae7cc81a39cf1f2 76 TIGRFAM TIGR00202 csrA: carbon storage regulator 2 66 5.5E-29 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 AP3564_07710 7252982e99b869068ae7cc81a39cf1f2 76 Pfam PF02599 Global regulator protein family 2 52 1.8E-24 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 AP3564_16870 27666e049e30b31e02528a9c4a75fde9 360 PRINTS PR01166 Cytochrome c oxidase subunit II signature 83 95 2.1E-7 T 13-10-2018 AP3564_16870 27666e049e30b31e02528a9c4a75fde9 360 PRINTS PR01166 Cytochrome c oxidase subunit II signature 95 115 2.1E-7 T 13-10-2018 AP3564_16870 27666e049e30b31e02528a9c4a75fde9 360 PRINTS PR01166 Cytochrome c oxidase subunit II signature 220 237 2.1E-7 T 13-10-2018 AP3564_16870 27666e049e30b31e02528a9c4a75fde9 360 SUPERFAMILY SSF46626 261 357 1.89E-19 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AP3564_16870 27666e049e30b31e02528a9c4a75fde9 360 Gene3D G3DSA:2.60.40.2600 130 360 3.0E-64 T 13-10-2018 AP3564_16870 27666e049e30b31e02528a9c4a75fde9 360 Pfam PF00034 Cytochrome c 264 356 2.8E-12 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_16870 27666e049e30b31e02528a9c4a75fde9 360 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 49 105 1.6E-9 T 13-10-2018 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_16870 27666e049e30b31e02528a9c4a75fde9 360 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 177 231 - T 13-10-2018 IPR001505 Copper centre Cu(A) GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_16870 27666e049e30b31e02528a9c4a75fde9 360 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 157 238 3.2E-13 T 13-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_16870 27666e049e30b31e02528a9c4a75fde9 360 TIGRFAM TIGR02866 CoxB: cytochrome c oxidase, subunit II 32 248 5.6E-54 T 13-10-2018 IPR014222 Cytochrome c oxidase, subunit II GO:0016021|GO:0016491 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_16870 27666e049e30b31e02528a9c4a75fde9 360 SUPERFAMILY SSF81464 15 113 1.52E-20 T 13-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_16870 27666e049e30b31e02528a9c4a75fde9 360 Gene3D G3DSA:1.10.287.90 28 112 6.9E-23 T 13-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_16870 27666e049e30b31e02528a9c4a75fde9 360 SUPERFAMILY SSF49503 131 285 2.84E-39 T 13-10-2018 IPR008972 Cupredoxin AP3564_06835 23316fd20fa41abe19a0814e097fcfe4 107 Gene3D G3DSA:3.30.750.24 1 106 4.0E-28 T 13-10-2018 IPR036513 STAS domain superfamily AP3564_06835 23316fd20fa41abe19a0814e097fcfe4 107 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 1 104 5.0E-33 T 13-10-2018 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 AP3564_06835 23316fd20fa41abe19a0814e097fcfe4 107 Pfam PF01740 STAS domain 5 101 2.0E-17 T 13-10-2018 IPR002645 STAS domain AP3564_06835 23316fd20fa41abe19a0814e097fcfe4 107 SUPERFAMILY SSF52091 3 101 2.16E-26 T 13-10-2018 IPR036513 STAS domain superfamily AP3564_13180 642d8ccbf6144d8c475d28923a5c943c 118 TIGRFAM TIGR02839 spore_V_AE: stage V sporulation protein AE 5 118 4.6E-52 T 13-10-2018 IPR014204 Sporulation stage V, protein AE AP3564_13180 642d8ccbf6144d8c475d28923a5c943c 118 Pfam PF03862 SpoVAC/SpoVAEB sporulation membrane protein 5 112 1.8E-40 T 13-10-2018 IPR005562 SpoVA AP3564_17870 77933574ffa02d0ae174a2751e94f67d 163 Pfam PF00364 Biotin-requiring enzyme 87 158 2.6E-21 T 13-10-2018 IPR000089 Biotin/lipoyl attachment AP3564_17870 77933574ffa02d0ae174a2751e94f67d 163 SUPERFAMILY SSF51230 84 160 7.98E-23 T 13-10-2018 IPR011053 Single hybrid motif AP3564_17870 77933574ffa02d0ae174a2751e94f67d 163 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 2 161 4.1E-57 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 AP3564_17870 77933574ffa02d0ae174a2751e94f67d 163 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 117 134 - T 13-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AP3564_17870 77933574ffa02d0ae174a2751e94f67d 163 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 90 103 6.3E-16 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 AP3564_17870 77933574ffa02d0ae174a2751e94f67d 163 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 122 135 6.3E-16 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 AP3564_17870 77933574ffa02d0ae174a2751e94f67d 163 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 107 121 6.3E-16 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 AP3564_17870 77933574ffa02d0ae174a2751e94f67d 163 Gene3D G3DSA:2.40.50.100 83 160 2.1E-28 T 13-10-2018 AP3564_19690 4f0d0d717746b5023978b4c7fe456854 143 SUPERFAMILY SSF52038 12 101 3.4E-13 T 13-10-2018 IPR035905 Barstar-like superfamily AP3564_19690 4f0d0d717746b5023978b4c7fe456854 143 Gene3D G3DSA:3.30.370.10 10 103 3.0E-7 T 13-10-2018 IPR035905 Barstar-like superfamily AP3564_19690 4f0d0d717746b5023978b4c7fe456854 143 Pfam PF01337 Barstar (barnase inhibitor) 14 100 2.3E-15 T 13-10-2018 IPR000468 Barstar (barnase inhibitor) AP3564_03475 4f0d0d717746b5023978b4c7fe456854 143 SUPERFAMILY SSF52038 12 101 3.4E-13 T 13-10-2018 IPR035905 Barstar-like superfamily AP3564_03475 4f0d0d717746b5023978b4c7fe456854 143 Gene3D G3DSA:3.30.370.10 10 103 3.0E-7 T 13-10-2018 IPR035905 Barstar-like superfamily AP3564_03475 4f0d0d717746b5023978b4c7fe456854 143 Pfam PF01337 Barstar (barnase inhibitor) 14 100 2.3E-15 T 13-10-2018 IPR000468 Barstar (barnase inhibitor) AP3564_00045 4f0d0d717746b5023978b4c7fe456854 143 SUPERFAMILY SSF52038 12 101 3.4E-13 T 13-10-2018 IPR035905 Barstar-like superfamily AP3564_00045 4f0d0d717746b5023978b4c7fe456854 143 Gene3D G3DSA:3.30.370.10 10 103 3.0E-7 T 13-10-2018 IPR035905 Barstar-like superfamily AP3564_00045 4f0d0d717746b5023978b4c7fe456854 143 Pfam PF01337 Barstar (barnase inhibitor) 14 100 2.3E-15 T 13-10-2018 IPR000468 Barstar (barnase inhibitor) AP3564_18835 d0282966ed2bfaec1df8bcdbf2e219f7 513 Pfam PF02910 Fumarate reductase flavoprotein C-term 413 505 1.2E-9 T 13-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AP3564_18835 d0282966ed2bfaec1df8bcdbf2e219f7 513 Gene3D G3DSA:3.50.50.60 5 381 3.2E-136 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_18835 d0282966ed2bfaec1df8bcdbf2e219f7 513 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 6.6E-5 T 13-10-2018 AP3564_18835 d0282966ed2bfaec1df8bcdbf2e219f7 513 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 333 355 6.6E-5 T 13-10-2018 AP3564_18835 d0282966ed2bfaec1df8bcdbf2e219f7 513 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 4 489 1.3E-163 T 13-10-2018 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 AP3564_18835 d0282966ed2bfaec1df8bcdbf2e219f7 513 SUPERFAMILY SSF51905 2 412 1.48E-57 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_18835 d0282966ed2bfaec1df8bcdbf2e219f7 513 SUPERFAMILY SSF46977 413 507 3.53E-22 T 13-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AP3564_18835 d0282966ed2bfaec1df8bcdbf2e219f7 513 Pfam PF00890 FAD binding domain 5 370 4.3E-85 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 AP3564_18835 d0282966ed2bfaec1df8bcdbf2e219f7 513 Gene3D G3DSA:1.20.58.100 397 504 4.3E-17 T 13-10-2018 AP3564_18835 d0282966ed2bfaec1df8bcdbf2e219f7 513 Gene3D G3DSA:3.90.700.10 230 336 3.2E-136 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 AP3564_18835 d0282966ed2bfaec1df8bcdbf2e219f7 513 SUPERFAMILY SSF56425 220 330 6.43E-34 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 AP3564_02735 b748b105abd9c127c814889fcafa7200 253 Gene3D G3DSA:3.40.50.150 17 253 2.9E-67 T 13-10-2018 AP3564_02735 b748b105abd9c127c814889fcafa7200 253 SUPERFAMILY SSF53335 6 202 8.74E-43 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_02735 b748b105abd9c127c814889fcafa7200 253 Pfam PF13847 Methyltransferase domain 32 132 1.8E-21 T 13-10-2018 IPR025714 Methyltransferase domain AP3564_15645 087d7e662fa2096abad43d479b39e1f7 427 Gene3D G3DSA:3.30.300.30 322 425 7.6E-24 T 13-10-2018 AP3564_15645 087d7e662fa2096abad43d479b39e1f7 427 Gene3D G3DSA:3.40.50.12780 1 321 8.7E-102 T 13-10-2018 AP3564_15645 087d7e662fa2096abad43d479b39e1f7 427 Pfam PF00501 AMP-binding enzyme 43 281 9.9E-11 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AP3564_15645 087d7e662fa2096abad43d479b39e1f7 427 Pfam PF14535 AMP-binding enzyme C-terminal domain 330 422 9.8E-14 T 13-10-2018 IPR028154 AMP-dependent ligase, C-terminal AP3564_15645 087d7e662fa2096abad43d479b39e1f7 427 SUPERFAMILY SSF56801 27 357 6.41E-41 T 13-10-2018 AP3564_05665 7b518ef231981eb4c8799271143cad1f 232 SUPERFAMILY SSF56808 6 226 2.09E-87 T 13-10-2018 IPR023674 Ribosomal protein L1-like AP3564_05665 7b518ef231981eb4c8799271143cad1f 232 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 45.387 T 13-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 AP3564_05665 7b518ef231981eb4c8799271143cad1f 232 Gene3D G3DSA:3.30.190.20 21 225 1.4E-87 T 13-10-2018 AP3564_05665 7b518ef231981eb4c8799271143cad1f 232 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 227 3.9E-110 T 13-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 AP3564_05665 7b518ef231981eb4c8799271143cad1f 232 Pfam PF00687 Ribosomal protein L1p/L10e family 31 220 7.1E-57 T 13-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein AP3564_05665 7b518ef231981eb4c8799271143cad1f 232 Gene3D G3DSA:3.40.50.790 68 159 1.4E-87 T 13-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich AP3564_05665 7b518ef231981eb4c8799271143cad1f 232 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 13-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05665 7b518ef231981eb4c8799271143cad1f 232 PIRSF PIRSF002155 1 227 3.8E-83 T 13-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_11475 8ff68152e8879b1d16b7a70f0f663ed1 207 SMART SM00855 6 156 2.3E-15 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AP3564_11475 8ff68152e8879b1d16b7a70f0f663ed1 207 SUPERFAMILY SSF53254 7 182 6.42E-38 T 13-10-2018 IPR029033 Histidine phosphatase superfamily AP3564_11475 8ff68152e8879b1d16b7a70f0f663ed1 207 Gene3D G3DSA:3.40.50.1240 5 201 7.8E-39 T 13-10-2018 IPR029033 Histidine phosphatase superfamily AP3564_11475 8ff68152e8879b1d16b7a70f0f663ed1 207 PIRSF PIRSF000709 5 163 1.0E-8 T 13-10-2018 AP3564_11475 8ff68152e8879b1d16b7a70f0f663ed1 207 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 8 183 2.0E-32 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AP3564_04750 b8e8a9124422da8f85cba6f60805c7d2 430 SMART SM00788 3 422 6.5E-293 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AP3564_04750 b8e8a9124422da8f85cba6f60805c7d2 430 SUPERFAMILY SSF52540 1 427 2.97E-176 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_04750 b8e8a9124422da8f85cba6f60805c7d2 430 Gene3D G3DSA:3.90.170.10 265 429 1.4E-71 T 13-10-2018 AP3564_04750 b8e8a9124422da8f85cba6f60805c7d2 430 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 5 427 7.9E-199 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AP3564_04750 b8e8a9124422da8f85cba6f60805c7d2 430 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 10 17 - T 13-10-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AP3564_04750 b8e8a9124422da8f85cba6f60805c7d2 430 Gene3D G3DSA:3.40.440.10 5 252 1.6E-106 T 13-10-2018 AP3564_04750 b8e8a9124422da8f85cba6f60805c7d2 430 Pfam PF00709 Adenylosuccinate synthetase 4 420 4.3E-187 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AP3564_04750 b8e8a9124422da8f85cba6f60805c7d2 430 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 430 212.252 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AP3564_04750 b8e8a9124422da8f85cba6f60805c7d2 430 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 131 142 - T 13-10-2018 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AP3564_04750 b8e8a9124422da8f85cba6f60805c7d2 430 Gene3D G3DSA:1.10.300.10 100 199 1.6E-106 T 13-10-2018 AP3564_02590 7103867fa214de8e44538aebdf9b2d06 275 ProSitePatterns PS00221 MIP family signature. 62 70 - T 13-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 AP3564_02590 7103867fa214de8e44538aebdf9b2d06 275 Pfam PF00230 Major intrinsic protein 3 230 1.4E-48 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AP3564_02590 7103867fa214de8e44538aebdf9b2d06 275 TIGRFAM TIGR00861 MIP: MIP family channel proteins 7 230 6.6E-65 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AP3564_02590 7103867fa214de8e44538aebdf9b2d06 275 Gene3D G3DSA:1.20.1080.10 1 240 5.1E-78 T 13-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 AP3564_02590 7103867fa214de8e44538aebdf9b2d06 275 PRINTS PR00783 Major intrinsic protein family signature 213 233 3.2E-50 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AP3564_02590 7103867fa214de8e44538aebdf9b2d06 275 PRINTS PR00783 Major intrinsic protein family signature 44 68 3.2E-50 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AP3564_02590 7103867fa214de8e44538aebdf9b2d06 275 PRINTS PR00783 Major intrinsic protein family signature 136 154 3.2E-50 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AP3564_02590 7103867fa214de8e44538aebdf9b2d06 275 PRINTS PR00783 Major intrinsic protein family signature 81 100 3.2E-50 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AP3564_02590 7103867fa214de8e44538aebdf9b2d06 275 PRINTS PR00783 Major intrinsic protein family signature 166 188 3.2E-50 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AP3564_02590 7103867fa214de8e44538aebdf9b2d06 275 PRINTS PR00783 Major intrinsic protein family signature 2 21 3.2E-50 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AP3564_02590 7103867fa214de8e44538aebdf9b2d06 275 SUPERFAMILY SSF81338 2 234 2.22E-73 T 13-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 AP3564_12515 1c90b02486610d1693468b84ae69ea6e 410 Gene3D G3DSA:3.40.1830.10 1 180 9.2E-69 T 13-10-2018 IPR035097 Peptidase M29, N-terminal AP3564_12515 1c90b02486610d1693468b84ae69ea6e 410 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 301 321 1.3E-73 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 AP3564_12515 1c90b02486610d1693468b84ae69ea6e 410 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 363 385 1.3E-73 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 AP3564_12515 1c90b02486610d1693468b84ae69ea6e 410 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 245 264 1.3E-73 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 AP3564_12515 1c90b02486610d1693468b84ae69ea6e 410 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 156 178 1.3E-73 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 AP3564_12515 1c90b02486610d1693468b84ae69ea6e 410 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 15 32 1.3E-73 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 AP3564_12515 1c90b02486610d1693468b84ae69ea6e 410 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 324 345 1.3E-73 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 AP3564_12515 1c90b02486610d1693468b84ae69ea6e 410 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 389 408 1.3E-73 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 AP3564_12515 1c90b02486610d1693468b84ae69ea6e 410 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 80 99 1.3E-73 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 AP3564_12515 1c90b02486610d1693468b84ae69ea6e 410 Pfam PF02073 Thermophilic metalloprotease (M29) 5 408 1.7E-180 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 AP3564_12515 1c90b02486610d1693468b84ae69ea6e 410 SUPERFAMILY SSF144052 4 409 1.31E-152 T 13-10-2018 AP3564_03895 5b822399e82d2047efb52d63e76f9abe 502 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 364 1.0E-74 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AP3564_03895 5b822399e82d2047efb52d63e76f9abe 502 Gene3D G3DSA:2.40.30.20 1 93 3.6E-37 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AP3564_03895 5b822399e82d2047efb52d63e76f9abe 502 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 499 52.201 T 13-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03895 5b822399e82d2047efb52d63e76f9abe 502 SUPERFAMILY SSF50615 10 94 1.16E-30 T 13-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AP3564_03895 5b822399e82d2047efb52d63e76f9abe 502 Gene3D G3DSA:3.40.50.300 94 371 1.6E-129 T 13-10-2018 AP3564_03895 5b822399e82d2047efb52d63e76f9abe 502 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 371 492 6.4E-48 T 13-10-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03895 5b822399e82d2047efb52d63e76f9abe 502 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 25 92 2.8E-20 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AP3564_03895 5b822399e82d2047efb52d63e76f9abe 502 SUPERFAMILY SSF52540 95 370 5.56E-100 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_03895 5b822399e82d2047efb52d63e76f9abe 502 PIRSF PIRSF039088 1 501 1.4E-254 T 13-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03895 5b822399e82d2047efb52d63e76f9abe 502 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 355 364 - T 13-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AP3564_03895 5b822399e82d2047efb52d63e76f9abe 502 Gene3D G3DSA:1.20.150.20 372 499 7.0E-53 T 13-10-2018 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03895 5b822399e82d2047efb52d63e76f9abe 502 SUPERFAMILY SSF47917 372 499 4.71E-48 T 13-10-2018 AP3564_03895 5b822399e82d2047efb52d63e76f9abe 502 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 3 499 1.7E-263 T 13-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_00890 1d75c67fad9a98655bd98f10a489cf9e 1205 SUPERFAMILY SSF52540 47 352 1.11E-5 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_16735 41abd3581200a988e9f1bfdfc85e1512 294 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 144 4.6E-23 T 13-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain AP3564_16735 41abd3581200a988e9f1bfdfc85e1512 294 SUPERFAMILY SSF48179 169 289 1.9E-25 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AP3564_16735 41abd3581200a988e9f1bfdfc85e1512 294 Gene3D G3DSA:1.10.1040.10 169 294 2.4E-40 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AP3564_16735 41abd3581200a988e9f1bfdfc85e1512 294 Gene3D G3DSA:3.40.50.720 1 168 1.8E-46 T 13-10-2018 AP3564_16735 41abd3581200a988e9f1bfdfc85e1512 294 SUPERFAMILY SSF51735 2 147 9.6E-17 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_16735 41abd3581200a988e9f1bfdfc85e1512 294 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 290 7.8E-63 T 13-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 AP3564_16735 41abd3581200a988e9f1bfdfc85e1512 294 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 171 289 1.2E-30 T 13-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain AP3564_11605 4101f1763fcc675497f826204730506a 661 SUPERFAMILY SSF56601 333 659 7.45E-80 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AP3564_11605 4101f1763fcc675497f826204730506a 661 Pfam PF05223 NTF2-like N-terminal transpeptidase domain 24 145 3.1E-29 T 13-10-2018 IPR007887 NTF2-like N-terminal transpeptidase GO:0046677 AP3564_11605 4101f1763fcc675497f826204730506a 661 Gene3D G3DSA:3.30.1390.30 174 247 5.1E-47 T 13-10-2018 AP3564_11605 4101f1763fcc675497f826204730506a 661 Gene3D G3DSA:3.10.450.100 22 141 2.2E-21 T 13-10-2018 AP3564_11605 4101f1763fcc675497f826204730506a 661 SUPERFAMILY SSF56519 148 332 1.03E-36 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 AP3564_11605 4101f1763fcc675497f826204730506a 661 Pfam PF00905 Penicillin binding protein transpeptidase domain 350 657 4.6E-68 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AP3564_11605 4101f1763fcc675497f826204730506a 661 Pfam PF03717 Penicillin-binding Protein dimerisation domain 153 310 6.8E-31 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AP3564_11605 4101f1763fcc675497f826204730506a 661 SUPERFAMILY SSF54427 25 143 1.66E-27 T 13-10-2018 IPR032710 NTF2-like domain superfamily AP3564_11605 4101f1763fcc675497f826204730506a 661 Gene3D G3DSA:3.40.710.10 332 661 1.6E-87 T 13-10-2018 AP3564_11605 4101f1763fcc675497f826204730506a 661 Gene3D G3DSA:3.90.1310.10 153 328 5.1E-47 T 13-10-2018 AP3564_18565 3fd24b88bc29a2cfd1b5c57b167a4a14 281 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 4 277 1.5E-95 T 13-10-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 AP3564_18565 3fd24b88bc29a2cfd1b5c57b167a4a14 281 Gene3D G3DSA:3.40.50.720 101 243 7.0E-95 T 13-10-2018 AP3564_18565 3fd24b88bc29a2cfd1b5c57b167a4a14 281 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 2 275 35.657 T 13-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 AP3564_18565 3fd24b88bc29a2cfd1b5c57b167a4a14 281 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 7 89 1.3E-30 T 13-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 AP3564_18565 3fd24b88bc29a2cfd1b5c57b167a4a14 281 SUPERFAMILY SSF53223 3 101 4.95E-35 T 13-10-2018 AP3564_18565 3fd24b88bc29a2cfd1b5c57b167a4a14 281 SUPERFAMILY SSF51735 102 276 9.87E-43 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_18565 3fd24b88bc29a2cfd1b5c57b167a4a14 281 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 120 205 1.8E-12 T 13-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase AP3564_18565 3fd24b88bc29a2cfd1b5c57b167a4a14 281 Gene3D G3DSA:3.40.50.10860 5 264 7.0E-95 T 13-10-2018 AP3564_09500 cf7b24043377a893db7f8e70b61af089 81 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 16 68 1.0E-22 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor AP3564_09500 cf7b24043377a893db7f8e70b61af089 81 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 5 75 1.6E-34 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor AP3564_09500 cf7b24043377a893db7f8e70b61af089 81 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 1 69 25.686 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor AP3564_09500 cf7b24043377a893db7f8e70b61af089 81 Pfam PF01809 Haemolytic domain 2 68 4.4E-32 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor AP3564_09500 cf7b24043377a893db7f8e70b61af089 81 SMART SM01234 1 68 1.2E-48 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor AP3564_08660 666f516523ee854c7e889bfdc0bf1a4e 94 SUPERFAMILY SSF47598 47 92 1.11E-6 T 13-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 AP3564_08660 666f516523ee854c7e889bfdc0bf1a4e 94 Gene3D G3DSA:1.10.1220.10 40 91 7.1E-9 T 13-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AP3564_18485 c626d9af6928710aef6db738825bf0ee 609 Hamap MF_00071 Elongation factor 4 [lepA]. 1 607 318.698 T 13-10-2018 IPR006297 Elongation factor 4 GO:0005525 AP3564_18485 c626d9af6928710aef6db738825bf0ee 609 Gene3D G3DSA:3.30.70.3380 377 488 4.8E-44 T 13-10-2018 AP3564_18485 c626d9af6928710aef6db738825bf0ee 609 Pfam PF06421 GTP-binding protein LepA C-terminus 497 603 9.2E-53 T 13-10-2018 IPR013842 GTP-binding protein LepA, C-terminal AP3564_18485 c626d9af6928710aef6db738825bf0ee 609 SUPERFAMILY SSF54980 301 379 8.63E-19 T 13-10-2018 IPR035647 EF-G domain III/V-like AP3564_18485 c626d9af6928710aef6db738825bf0ee 609 Gene3D G3DSA:3.30.70.870 295 376 2.7E-36 T 13-10-2018 AP3564_18485 c626d9af6928710aef6db738825bf0ee 609 Gene3D G3DSA:3.30.70.2570 489 563 3.4E-36 T 13-10-2018 IPR038363 LepA, C-terminal domain superfamily AP3564_18485 c626d9af6928710aef6db738825bf0ee 609 SUPERFAMILY SSF54980 408 503 1.87E-27 T 13-10-2018 IPR035647 EF-G domain III/V-like AP3564_18485 c626d9af6928710aef6db738825bf0ee 609 Pfam PF03144 Elongation factor Tu domain 2 214 284 6.7E-14 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AP3564_18485 c626d9af6928710aef6db738825bf0ee 609 Gene3D G3DSA:3.40.50.300 9 194 3.5E-75 T 13-10-2018 AP3564_18485 c626d9af6928710aef6db738825bf0ee 609 SUPERFAMILY SSF50447 175 297 8.73E-35 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AP3564_18485 c626d9af6928710aef6db738825bf0ee 609 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 14 183 4.6E-19 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AP3564_18485 c626d9af6928710aef6db738825bf0ee 609 Pfam PF00679 Elongation factor G C-terminus 408 495 2.0E-25 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like AP3564_18485 c626d9af6928710aef6db738825bf0ee 609 SUPERFAMILY SSF52540 9 214 8.14E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_18485 c626d9af6928710aef6db738825bf0ee 609 Gene3D G3DSA:2.40.30.10 195 294 2.6E-38 T 13-10-2018 AP3564_18485 c626d9af6928710aef6db738825bf0ee 609 PRINTS PR00315 GTP-binding elongation factor signature 15 28 3.9E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AP3564_18485 c626d9af6928710aef6db738825bf0ee 609 PRINTS PR00315 GTP-binding elongation factor signature 83 93 3.9E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AP3564_18485 c626d9af6928710aef6db738825bf0ee 609 PRINTS PR00315 GTP-binding elongation factor signature 135 144 3.9E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AP3564_18485 c626d9af6928710aef6db738825bf0ee 609 PRINTS PR00315 GTP-binding elongation factor signature 99 110 3.9E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AP3564_18485 c626d9af6928710aef6db738825bf0ee 609 PRINTS PR00315 GTP-binding elongation factor signature 58 66 3.9E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AP3564_18485 c626d9af6928710aef6db738825bf0ee 609 TIGRFAM TIGR01393 lepA: elongation factor 4 11 605 0.0 T 13-10-2018 IPR006297 Elongation factor 4 GO:0005525 AP3564_18485 c626d9af6928710aef6db738825bf0ee 609 SMART SM00838 407 495 8.3E-5 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like AP3564_18485 c626d9af6928710aef6db738825bf0ee 609 Pfam PF00009 Elongation factor Tu GTP binding domain 11 190 5.8E-54 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AP3564_18485 c626d9af6928710aef6db738825bf0ee 609 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site AP3564_02625 74852338f361fb7883ca8f9927c9933d 372 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 6 357 1.1E-140 T 13-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 AP3564_02625 74852338f361fb7883ca8f9927c9933d 372 SUPERFAMILY SSF52402 2 243 1.08E-61 T 13-10-2018 AP3564_02625 74852338f361fb7883ca8f9927c9933d 372 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 6 358 40.746 T 13-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 AP3564_02625 74852338f361fb7883ca8f9927c9933d 372 Gene3D G3DSA:2.30.30.280 212 278 4.3E-27 T 13-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 AP3564_02625 74852338f361fb7883ca8f9927c9933d 372 Pfam PF03054 tRNA methyl transferase 6 357 1.6E-145 T 13-10-2018 AP3564_02625 74852338f361fb7883ca8f9927c9933d 372 Gene3D G3DSA:2.40.30.10 279 370 5.6E-25 T 13-10-2018 AP3564_02625 74852338f361fb7883ca8f9927c9933d 372 Gene3D G3DSA:3.40.50.620 1 211 1.5E-97 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AP3564_12260 1f716cd98047d4233eed8b35adcac3f6 814 Gene3D G3DSA:3.30.870.10 2 175 9.9E-36 T 13-10-2018 AP3564_12260 1f716cd98047d4233eed8b35adcac3f6 814 Pfam PF00271 Helicase conserved C-terminal domain 444 542 1.9E-13 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_12260 1f716cd98047d4233eed8b35adcac3f6 814 Gene3D G3DSA:3.40.50.300 387 576 9.3E-39 T 13-10-2018 AP3564_12260 1f716cd98047d4233eed8b35adcac3f6 814 Gene3D G3DSA:3.40.50.300 202 383 2.7E-47 T 13-10-2018 AP3564_12260 1f716cd98047d4233eed8b35adcac3f6 814 SUPERFAMILY SSF56024 23 131 9.94E-8 T 13-10-2018 AP3564_12260 1f716cd98047d4233eed8b35adcac3f6 814 SMART SM00490 462 543 2.9E-10 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_12260 1f716cd98047d4233eed8b35adcac3f6 814 Pfam PF04851 Type III restriction enzyme, res subunit 222 368 2.4E-31 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AP3564_12260 1f716cd98047d4233eed8b35adcac3f6 814 SUPERFAMILY SSF52540 268 557 5.5E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_12260 1f716cd98047d4233eed8b35adcac3f6 814 SMART SM00487 219 392 8.0E-13 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AP3564_12260 1f716cd98047d4233eed8b35adcac3f6 814 Pfam PF13091 PLD-like domain 20 145 4.8E-10 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AP3564_10230 8ab24bca34981b50c51087c508c37c47 337 SUPERFAMILY SSF69572 2 327 6.02E-84 T 13-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 AP3564_10230 8ab24bca34981b50c51087c508c37c47 337 Pfam PF00899 ThiF family 5 238 1.4E-60 T 13-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AP3564_10230 8ab24bca34981b50c51087c508c37c47 337 Gene3D G3DSA:3.40.50.720 1 247 8.4E-76 T 13-10-2018 AP3564_09125 a3d608d15cddb24ff36fb75d49e563ec 497 SUPERFAMILY SSF53187 176 491 6.28E-114 T 13-10-2018 AP3564_09125 a3d608d15cddb24ff36fb75d49e563ec 497 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 14 142 1.0E-25 T 13-10-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AP3564_09125 a3d608d15cddb24ff36fb75d49e563ec 497 Gene3D G3DSA:3.40.220.10 3 152 3.7E-34 T 13-10-2018 AP3564_09125 a3d608d15cddb24ff36fb75d49e563ec 497 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 180 485 4.6E-117 T 13-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AP3564_09125 a3d608d15cddb24ff36fb75d49e563ec 497 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 341 348 - T 13-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AP3564_09125 a3d608d15cddb24ff36fb75d49e563ec 497 Gene3D G3DSA:3.40.630.10 166 492 6.1E-128 T 13-10-2018 AP3564_09125 a3d608d15cddb24ff36fb75d49e563ec 497 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 2 494 34.768 T 13-10-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 AP3564_09125 a3d608d15cddb24ff36fb75d49e563ec 497 SUPERFAMILY SSF52949 8 177 2.24E-30 T 13-10-2018 AP3564_09125 a3d608d15cddb24ff36fb75d49e563ec 497 PRINTS PR00481 Cytosol aminopeptidase signature 256 273 1.4E-49 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AP3564_09125 a3d608d15cddb24ff36fb75d49e563ec 497 PRINTS PR00481 Cytosol aminopeptidase signature 278 299 1.4E-49 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AP3564_09125 a3d608d15cddb24ff36fb75d49e563ec 497 PRINTS PR00481 Cytosol aminopeptidase signature 315 336 1.4E-49 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AP3564_09125 a3d608d15cddb24ff36fb75d49e563ec 497 PRINTS PR00481 Cytosol aminopeptidase signature 365 380 1.4E-49 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AP3564_09125 a3d608d15cddb24ff36fb75d49e563ec 497 PRINTS PR00481 Cytosol aminopeptidase signature 337 357 1.4E-49 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AP3564_13550 84a278d7923eccaa6882d07af7b6eadb 1041 SUPERFAMILY SSF82866 181 341 3.01E-29 T 13-10-2018 AP3564_13550 84a278d7923eccaa6882d07af7b6eadb 1041 Pfam PF03176 MMPL family 738 1037 1.2E-47 T 13-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 AP3564_13550 84a278d7923eccaa6882d07af7b6eadb 1041 Pfam PF03176 MMPL family 55 366 4.3E-62 T 13-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 AP3564_13550 84a278d7923eccaa6882d07af7b6eadb 1041 SUPERFAMILY SSF57997 518 706 8.5E-5 T 13-10-2018 AP3564_13550 84a278d7923eccaa6882d07af7b6eadb 1041 Gene3D G3DSA:1.20.1640.10 834 1035 3.5E-6 T 13-10-2018 AP3564_13550 84a278d7923eccaa6882d07af7b6eadb 1041 Gene3D G3DSA:1.20.1640.10 132 355 1.3E-10 T 13-10-2018 AP3564_13550 84a278d7923eccaa6882d07af7b6eadb 1041 TIGRFAM TIGR03057 xxxLxxG_by_4: X-X-X-Leu-X-X-Gly heptad repeats 511 535 3.5E-4 T 13-10-2018 IPR023908 xxxLxxG heptad repeat AP3564_13550 84a278d7923eccaa6882d07af7b6eadb 1041 SUPERFAMILY SSF82866 832 1036 6.02E-30 T 13-10-2018 AP3564_07055 819fa0fe97271f0c6a7334a940887fab 323 Gene3D G3DSA:3.30.2010.10 233 305 1.6E-7 T 13-10-2018 AP3564_07055 819fa0fe97271f0c6a7334a940887fab 323 Pfam PF01435 Peptidase family M48 242 311 1.3E-9 T 13-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AP3564_09875 638f144a5e4fd946f31e654f195b76a0 59 Pfam PF10055 Uncharacterized small protein (DUF2292) 10 45 1.9E-17 T 13-10-2018 IPR018743 Protein of unknown function DUF2292 AP3564_11170 27e16ef5c08b35c1585002a16a9d6cec 342 SUPERFAMILY SSF56235 46 327 2.88E-40 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AP3564_11170 27e16ef5c08b35c1585002a16a9d6cec 342 Pfam PF13522 Glutamine amidotransferase domain 181 315 2.2E-20 T 13-10-2018 AP3564_01410 61b562e1af223d24f36652d7165b61fa 274 SUPERFAMILY SSF161098 8 274 3.92E-61 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_01410 61b562e1af223d24f36652d7165b61fa 274 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 264 5.8E-7 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AP3564_01410 61b562e1af223d24f36652d7165b61fa 274 Gene3D G3DSA:1.10.3720.10 2 265 2.2E-58 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_16610 f2720aa3acdd945870ee7c000d9ed00f 223 PIRSF PIRSF004848 1 223 8.8E-66 T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 AP3564_16610 f2720aa3acdd945870ee7c000d9ed00f 223 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 74 88 - T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 AP3564_16610 f2720aa3acdd945870ee7c000d9ed00f 223 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 5 223 27.356 T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 AP3564_16610 f2720aa3acdd945870ee7c000d9ed00f 223 Pfam PF01168 Alanine racemase, N-terminal domain 7 222 2.4E-19 T 13-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AP3564_16610 f2720aa3acdd945870ee7c000d9ed00f 223 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 3 222 5.7E-48 T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 AP3564_16610 f2720aa3acdd945870ee7c000d9ed00f 223 SUPERFAMILY SSF51419 2 222 3.4E-71 T 13-10-2018 IPR029066 PLP-binding barrel AP3564_16610 f2720aa3acdd945870ee7c000d9ed00f 223 Gene3D G3DSA:3.20.20.10 1 223 2.1E-75 T 13-10-2018 IPR029066 PLP-binding barrel AP3564_15630 22d81b10ffbd7e82dc68272edc30bc13 447 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 287 294 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AP3564_15630 22d81b10ffbd7e82dc68272edc30bc13 447 SUPERFAMILY SSF56059 84 353 1.94E-72 T 13-10-2018 AP3564_15630 22d81b10ffbd7e82dc68272edc30bc13 447 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 3 445 6.5E-194 T 13-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 AP3564_15630 22d81b10ffbd7e82dc68272edc30bc13 447 Gene3D G3DSA:3.30.470.130 1 447 3.4E-194 T 13-10-2018 AP3564_15630 22d81b10ffbd7e82dc68272edc30bc13 447 Pfam PF00289 Biotin carboxylase, N-terminal domain 3 111 3.8E-41 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AP3564_15630 22d81b10ffbd7e82dc68272edc30bc13 447 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 118 323 1.5E-77 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AP3564_15630 22d81b10ffbd7e82dc68272edc30bc13 447 Pfam PF02785 Biotin carboxylase C-terminal domain 337 443 1.7E-41 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AP3564_15630 22d81b10ffbd7e82dc68272edc30bc13 447 SUPERFAMILY SSF51246 332 446 3.82E-44 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AP3564_15630 22d81b10ffbd7e82dc68272edc30bc13 447 SUPERFAMILY SSF52440 2 114 5.11E-43 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AP3564_15630 22d81b10ffbd7e82dc68272edc30bc13 447 SMART SM00878 337 443 4.3E-59 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AP3564_00090 ae36fc1dd313e88564119e8707811b71 266 SMART SM00382 41 194 9.4E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_00090 ae36fc1dd313e88564119e8707811b71 266 SUPERFAMILY SSF52540 29 262 2.98E-26 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_00090 ae36fc1dd313e88564119e8707811b71 266 Pfam PF13401 AAA domain 40 170 7.6E-20 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_00090 ae36fc1dd313e88564119e8707811b71 266 Gene3D G3DSA:3.40.50.300 28 183 1.3E-9 T 13-10-2018 AP3564_03430 ae36fc1dd313e88564119e8707811b71 266 SMART SM00382 41 194 9.4E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_03430 ae36fc1dd313e88564119e8707811b71 266 SUPERFAMILY SSF52540 29 262 2.98E-26 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_03430 ae36fc1dd313e88564119e8707811b71 266 Pfam PF13401 AAA domain 40 170 7.6E-20 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_03430 ae36fc1dd313e88564119e8707811b71 266 Gene3D G3DSA:3.40.50.300 28 183 1.3E-9 T 13-10-2018 AP3564_01325 99e849ad72c4306cd8e21d6a790c0614 487 SMART SM01060 8 392 0.0 T 13-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AP3564_01325 99e849ad72c4306cd8e21d6a790c0614 487 Gene3D G3DSA:2.40.180.10 3 485 2.3E-242 T 13-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 AP3564_01325 99e849ad72c4306cd8e21d6a790c0614 487 SUPERFAMILY SSF56634 3 483 1.83E-226 T 13-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AP3564_01325 99e849ad72c4306cd8e21d6a790c0614 487 Pfam PF06628 Catalase-related immune-responsive 414 476 9.1E-27 T 13-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AP3564_01325 99e849ad72c4306cd8e21d6a790c0614 487 PRINTS PR00067 Catalase signature 289 316 1.0E-77 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AP3564_01325 99e849ad72c4306cd8e21d6a790c0614 487 PRINTS PR00067 Catalase signature 105 122 1.0E-77 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AP3564_01325 99e849ad72c4306cd8e21d6a790c0614 487 PRINTS PR00067 Catalase signature 21 44 1.0E-77 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AP3564_01325 99e849ad72c4306cd8e21d6a790c0614 487 PRINTS PR00067 Catalase signature 84 102 1.0E-77 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AP3564_01325 99e849ad72c4306cd8e21d6a790c0614 487 PRINTS PR00067 Catalase signature 124 142 1.0E-77 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AP3564_01325 99e849ad72c4306cd8e21d6a790c0614 487 PRINTS PR00067 Catalase signature 321 347 1.0E-77 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AP3564_01325 99e849ad72c4306cd8e21d6a790c0614 487 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 334 342 - T 13-10-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AP3564_01325 99e849ad72c4306cd8e21d6a790c0614 487 ProSitePatterns PS00438 Catalase proximal active site signature. 44 60 - T 13-10-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AP3564_01325 99e849ad72c4306cd8e21d6a790c0614 487 Pfam PF00199 Catalase 8 389 1.6E-204 T 13-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AP3564_01325 99e849ad72c4306cd8e21d6a790c0614 487 PIRSF PIRSF038928 1 482 2.0E-235 T 13-10-2018 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AP3564_06065 2abf1516d6eb57708633f96b8a58095d 448 SUPERFAMILY SSF53738 3 180 3.92E-47 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AP3564_06065 2abf1516d6eb57708633f96b8a58095d 448 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 373 441 3.1E-19 T 13-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AP3564_06065 2abf1516d6eb57708633f96b8a58095d 448 Gene3D G3DSA:3.30.310.50 370 448 1.5E-30 T 13-10-2018 AP3564_06065 2abf1516d6eb57708633f96b8a58095d 448 Gene3D G3DSA:3.40.120.10 173 362 7.7E-74 T 13-10-2018 AP3564_06065 2abf1516d6eb57708633f96b8a58095d 448 SUPERFAMILY SSF53738 257 366 1.69E-35 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AP3564_06065 2abf1516d6eb57708633f96b8a58095d 448 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 3 136 1.5E-43 T 13-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AP3564_06065 2abf1516d6eb57708633f96b8a58095d 448 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 93 107 2.1E-12 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AP3564_06065 2abf1516d6eb57708633f96b8a58095d 448 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 233 248 2.1E-12 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AP3564_06065 2abf1516d6eb57708633f96b8a58095d 448 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 173 192 2.1E-12 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AP3564_06065 2abf1516d6eb57708633f96b8a58095d 448 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 1 444 45.729 T 13-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AP3564_06065 2abf1516d6eb57708633f96b8a58095d 448 SUPERFAMILY SSF55957 357 446 4.06E-27 T 13-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AP3564_06065 2abf1516d6eb57708633f96b8a58095d 448 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 94 103 - T 13-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AP3564_06065 2abf1516d6eb57708633f96b8a58095d 448 Gene3D G3DSA:3.40.120.10 3 155 2.8E-59 T 13-10-2018 AP3564_06065 2abf1516d6eb57708633f96b8a58095d 448 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 158 253 2.0E-16 T 13-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AP3564_06065 2abf1516d6eb57708633f96b8a58095d 448 Gene3D G3DSA:3.40.120.10 256 339 7.7E-74 T 13-10-2018 AP3564_06065 2abf1516d6eb57708633f96b8a58095d 448 SUPERFAMILY SSF53738 157 255 1.22E-26 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AP3564_06065 2abf1516d6eb57708633f96b8a58095d 448 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 257 368 2.0E-37 T 13-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AP3564_06065 2abf1516d6eb57708633f96b8a58095d 448 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 5 442 3.3E-190 T 13-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AP3564_17565 5b71653c5d8aeffe746c45e66d7fc3f7 212 TIGRFAM TIGR02831 spo_II_M: stage II sporulation protein M 8 204 1.2E-75 T 13-10-2018 IPR014196 Stage II sporulation protein M AP3564_17565 5b71653c5d8aeffe746c45e66d7fc3f7 212 PIRSF PIRSF038973 1 211 1.4E-72 T 13-10-2018 IPR014196 Stage II sporulation protein M AP3564_17565 5b71653c5d8aeffe746c45e66d7fc3f7 212 Pfam PF01944 Stage II sporulation protein M 23 200 8.8E-28 T 13-10-2018 IPR002798 Stage II sporulation protein M-like AP3564_08780 b1fe346f6f6696a861c5d4210e937adf 253 Pfam PF00121 Triosephosphate isomerase 5 246 1.9E-97 T 13-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_08780 b1fe346f6f6696a861c5d4210e937adf 253 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 249 62.969 T 13-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_08780 b1fe346f6f6696a861c5d4210e937adf 253 SUPERFAMILY SSF51351 1 248 1.44E-96 T 13-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_08780 b1fe346f6f6696a861c5d4210e937adf 253 Gene3D G3DSA:3.20.20.70 2 253 1.2E-107 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_08780 b1fe346f6f6696a861c5d4210e937adf 253 ProSitePatterns PS00171 Triosephosphate isomerase active site. 165 175 - T 13-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_08780 b1fe346f6f6696a861c5d4210e937adf 253 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 240 9.0E-60 T 13-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_11220 fa02ad4ee4447153d400155bee11483f 399 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 85 103 - T 13-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 AP3564_11220 fa02ad4ee4447153d400155bee11483f 399 ProSitePatterns PS00099 Thiolases active site. 380 393 - T 13-10-2018 IPR020610 Thiolase, active site GO:0016747 AP3564_11220 fa02ad4ee4447153d400155bee11483f 399 PIRSF PIRSF000429 1 399 4.0E-150 T 13-10-2018 IPR002155 Thiolase GO:0016747 AP3564_11220 fa02ad4ee4447153d400155bee11483f 399 Pfam PF00108 Thiolase, N-terminal domain 5 269 9.7E-93 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 AP3564_11220 fa02ad4ee4447153d400155bee11483f 399 Gene3D G3DSA:3.40.47.10 141 396 4.9E-174 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AP3564_11220 fa02ad4ee4447153d400155bee11483f 399 SUPERFAMILY SSF53901 277 397 1.43E-48 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AP3564_11220 fa02ad4ee4447153d400155bee11483f 399 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 397 5.2E-158 T 13-10-2018 IPR002155 Thiolase GO:0016747 AP3564_11220 fa02ad4ee4447153d400155bee11483f 399 ProSitePatterns PS00737 Thiolases signature 2. 345 361 - T 13-10-2018 IPR020613 Thiolase, conserved site GO:0016747 AP3564_11220 fa02ad4ee4447153d400155bee11483f 399 Pfam PF02803 Thiolase, C-terminal domain 277 398 2.9E-53 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 AP3564_11220 fa02ad4ee4447153d400155bee11483f 399 Gene3D G3DSA:3.40.47.10 6 282 4.9E-174 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AP3564_11220 fa02ad4ee4447153d400155bee11483f 399 SUPERFAMILY SSF53901 3 275 2.96E-91 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AP3564_16425 a37c56c3b5f72000b01a8560c92692b2 252 Pfam PF13672 Protein phosphatase 2C 13 230 8.2E-16 T 13-10-2018 AP3564_16425 a37c56c3b5f72000b01a8560c92692b2 252 SUPERFAMILY SSF81606 2 239 1.83E-63 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AP3564_16425 a37c56c3b5f72000b01a8560c92692b2 252 Gene3D G3DSA:3.60.40.10 1 242 4.5E-72 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AP3564_16425 a37c56c3b5f72000b01a8560c92692b2 252 SMART SM00332 1 240 6.9E-22 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AP3564_16425 a37c56c3b5f72000b01a8560c92692b2 252 SMART SM00331 7 242 4.0E-47 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AP3564_12225 b6eea8b0dd6f7d898bcdaa5b94209fad 415 Pfam PF01546 Peptidase family M20/M25/M40 83 411 1.7E-29 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 AP3564_12225 b6eea8b0dd6f7d898bcdaa5b94209fad 415 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 15 412 2.5E-131 T 13-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 AP3564_12225 b6eea8b0dd6f7d898bcdaa5b94209fad 415 SUPERFAMILY SSF53187 12 414 8.75E-79 T 13-10-2018 AP3564_12225 b6eea8b0dd6f7d898bcdaa5b94209fad 415 Pfam PF07687 Peptidase dimerisation domain 221 319 1.2E-5 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain AP3564_12225 b6eea8b0dd6f7d898bcdaa5b94209fad 415 Gene3D G3DSA:3.30.70.360 218 332 8.9E-132 T 13-10-2018 AP3564_12225 b6eea8b0dd6f7d898bcdaa5b94209fad 415 Gene3D G3DSA:3.40.630.10 25 406 8.9E-132 T 13-10-2018 AP3564_12225 b6eea8b0dd6f7d898bcdaa5b94209fad 415 PIRSF PIRSF001235 9 415 1.1E-135 T 13-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 AP3564_12225 b6eea8b0dd6f7d898bcdaa5b94209fad 415 SUPERFAMILY SSF55031 218 334 4.34E-26 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain AP3564_07490 ad1b4c0cd196fecaea3391bb9c3e305e 327 SMART SM00861 4 179 2.6E-69 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AP3564_07490 ad1b4c0cd196fecaea3391bb9c3e305e 327 Gene3D G3DSA:3.40.50.970 1 191 4.2E-91 T 13-10-2018 AP3564_07490 ad1b4c0cd196fecaea3391bb9c3e305e 327 SUPERFAMILY SSF52922 190 324 3.01E-46 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AP3564_07490 ad1b4c0cd196fecaea3391bb9c3e305e 327 Pfam PF02780 Transketolase, C-terminal domain 193 316 2.2E-45 T 13-10-2018 IPR033248 Transketolase, C-terminal domain AP3564_07490 ad1b4c0cd196fecaea3391bb9c3e305e 327 SUPERFAMILY SSF52518 1 203 2.7E-72 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold AP3564_07490 ad1b4c0cd196fecaea3391bb9c3e305e 327 Pfam PF02779 Transketolase, pyrimidine binding domain 3 178 2.1E-52 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AP3564_07490 ad1b4c0cd196fecaea3391bb9c3e305e 327 Gene3D G3DSA:3.40.50.920 192 326 1.5E-50 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AP3564_10840 5e3c2cd7090aea79f744261dbc0c792e 1383 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1232 1318 1.0E-22 T 13-10-2018 AP3564_10840 5e3c2cd7090aea79f744261dbc0c792e 1383 Gene3D G3DSA:3.40.50.300 1043 1329 3.6E-5 T 13-10-2018 AP3564_10840 5e3c2cd7090aea79f744261dbc0c792e 1383 TIGRFAM TIGR02680 TIGR02680: TIGR02680 family protein 4 1368 0.0 T 13-10-2018 IPR013496 Conserved hypothetical protein CHP02680 AP3564_10840 5e3c2cd7090aea79f744261dbc0c792e 1383 SUPERFAMILY SSF52540 20 1326 1.37E-7 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_03780 454317990645aaa8f31bde4dfdf52203 133 Gene3D G3DSA:1.10.260.40 1 123 8.9E-21 T 13-10-2018 AP3564_03780 454317990645aaa8f31bde4dfdf52203 133 SUPERFAMILY SSF47413 8 69 4.29E-18 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AP3564_03780 454317990645aaa8f31bde4dfdf52203 133 SMART SM00530 10 65 6.1E-17 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AP3564_03780 454317990645aaa8f31bde4dfdf52203 133 Pfam PF01381 Helix-turn-helix 14 65 1.7E-17 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AP3564_11615 ccb9f801b8b208c66a4c3f06ee5975bc 248 Gene3D G3DSA:1.20.120.530 82 239 2.0E-28 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AP3564_11615 ccb9f801b8b208c66a4c3f06ee5975bc 248 SUPERFAMILY SSF48008 95 234 2.54E-27 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AP3564_11615 ccb9f801b8b208c66a4c3f06ee5975bc 248 SMART SM00345 15 74 1.9E-18 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_11615 ccb9f801b8b208c66a4c3f06ee5975bc 248 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 74 5.7E-19 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_11615 ccb9f801b8b208c66a4c3f06ee5975bc 248 Gene3D G3DSA:1.10.10.10 1 74 8.9E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_11615 ccb9f801b8b208c66a4c3f06ee5975bc 248 SUPERFAMILY SSF46785 6 78 1.18E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_11615 ccb9f801b8b208c66a4c3f06ee5975bc 248 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 1.9E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_11615 ccb9f801b8b208c66a4c3f06ee5975bc 248 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 1.9E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_11615 ccb9f801b8b208c66a4c3f06ee5975bc 248 Pfam PF07729 FCD domain 100 225 1.7E-22 T 13-10-2018 IPR011711 GntR, C-terminal AP3564_11615 ccb9f801b8b208c66a4c3f06ee5975bc 248 SMART SM00895 99 226 1.1E-20 T 13-10-2018 IPR011711 GntR, C-terminal AP3564_06705 e46f9f3e355d55946374c5e183b8c89c 232 Gene3D G3DSA:3.40.50.2300 1 125 5.9E-36 T 13-10-2018 AP3564_06705 e46f9f3e355d55946374c5e183b8c89c 232 Gene3D G3DSA:1.10.10.10 126 232 1.1E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_06705 e46f9f3e355d55946374c5e183b8c89c 232 SUPERFAMILY SSF52172 1 127 3.42E-39 T 13-10-2018 IPR011006 CheY-like superfamily AP3564_06705 e46f9f3e355d55946374c5e183b8c89c 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 223 9.3E-28 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AP3564_06705 e46f9f3e355d55946374c5e183b8c89c 232 SMART SM00448 1 112 3.8E-40 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_06705 e46f9f3e355d55946374c5e183b8c89c 232 SMART SM00862 148 223 2.3E-29 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AP3564_06705 e46f9f3e355d55946374c5e183b8c89c 232 SUPERFAMILY SSF46894 123 224 1.02E-29 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AP3564_06705 e46f9f3e355d55946374c5e183b8c89c 232 Pfam PF00072 Response regulator receiver domain 3 113 5.7E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_14980 6a1a249794e17187f9422fc1e14933dc 223 Gene3D G3DSA:3.40.50.2300 2 121 2.1E-39 T 13-10-2018 AP3564_14980 6a1a249794e17187f9422fc1e14933dc 223 Pfam PF00072 Response regulator receiver domain 4 113 4.8E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_14980 6a1a249794e17187f9422fc1e14933dc 223 SUPERFAMILY SSF52172 1 128 1.2E-42 T 13-10-2018 IPR011006 CheY-like superfamily AP3564_14980 6a1a249794e17187f9422fc1e14933dc 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 220 5.3E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AP3564_14980 6a1a249794e17187f9422fc1e14933dc 223 SMART SM00862 144 221 2.4E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AP3564_14980 6a1a249794e17187f9422fc1e14933dc 223 Gene3D G3DSA:1.10.10.10 122 223 4.4E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_14980 6a1a249794e17187f9422fc1e14933dc 223 SMART SM00448 2 112 3.4E-43 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_14980 6a1a249794e17187f9422fc1e14933dc 223 SUPERFAMILY SSF46894 118 221 3.61E-27 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AP3564_03960 5566423dcadd656f3d8b4853cb66ad9d 431 SMART SM00283 153 428 3.5E-59 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AP3564_03960 5566423dcadd656f3d8b4853cb66ad9d 431 Gene3D G3DSA:1.10.287.950 125 428 3.2E-65 T 13-10-2018 AP3564_03960 5566423dcadd656f3d8b4853cb66ad9d 431 Pfam PF00672 HAMP domain 73 121 3.6E-11 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AP3564_03960 5566423dcadd656f3d8b4853cb66ad9d 431 SUPERFAMILY SSF58104 98 427 8.11E-67 T 13-10-2018 AP3564_03960 5566423dcadd656f3d8b4853cb66ad9d 431 Gene3D G3DSA:1.20.1480.50 38 124 9.4E-11 T 13-10-2018 AP3564_03960 5566423dcadd656f3d8b4853cb66ad9d 431 SMART SM00304 71 124 4.8E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AP3564_03960 5566423dcadd656f3d8b4853cb66ad9d 431 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 184 381 1.0E-36 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AP3564_06560 dbd9ef8d3f30aa812f1078ba52fabf88 348 Gene3D G3DSA:1.10.8.60 281 348 9.5E-30 T 13-10-2018 AP3564_06560 dbd9ef8d3f30aa812f1078ba52fabf88 348 TIGRFAM TIGR03217 4OH_2_O_val_ald: 4-hydroxy-2-oxovalerate aldolase 13 342 1.9E-164 T 13-10-2018 IPR017629 4-hydroxy-2-oxovalerate aldolase GO:0008701|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 AP3564_06560 dbd9ef8d3f30aa812f1078ba52fabf88 348 Pfam PF07836 DmpG-like communication domain 280 340 7.5E-31 T 13-10-2018 IPR012425 DmpG-like communication GO:0016833|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 AP3564_06560 dbd9ef8d3f30aa812f1078ba52fabf88 348 ProDom PD005364 ALDOLASE 4-HYDROXY-2-OXOVALERATE LYASE PYRUVATE 4.1.3.- PLASMID HMG-COA LYASE-LIKE TRANSFERASE HOA 278 340 5.0E-22 T 13-10-2018 IPR012425 DmpG-like communication GO:0016833|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 AP3564_06560 dbd9ef8d3f30aa812f1078ba52fabf88 348 Gene3D G3DSA:3.20.20.70 9 274 1.1E-85 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_06560 dbd9ef8d3f30aa812f1078ba52fabf88 348 Pfam PF00682 HMGL-like 14 269 4.6E-58 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 AP3564_06560 dbd9ef8d3f30aa812f1078ba52fabf88 348 SUPERFAMILY SSF51569 11 277 1.17E-67 T 13-10-2018 AP3564_06560 dbd9ef8d3f30aa812f1078ba52fabf88 348 SUPERFAMILY SSF89000 294 343 9.02E-18 T 13-10-2018 AP3564_06560 dbd9ef8d3f30aa812f1078ba52fabf88 348 Hamap MF_01656 4-hydroxy-2-oxovalerate aldolase [mhpE]. 1 348 178.39 T 13-10-2018 IPR017629 4-hydroxy-2-oxovalerate aldolase GO:0008701|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 AP3564_10680 23e5082d7a463e6871a5d0b3591eb106 185 ProSitePatterns PS00194 Thioredoxin family active site. 75 93 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AP3564_10680 23e5082d7a463e6871a5d0b3591eb106 185 Gene3D G3DSA:3.40.30.10 20 185 4.3E-51 T 13-10-2018 AP3564_10680 23e5082d7a463e6871a5d0b3591eb106 185 SUPERFAMILY SSF52833 47 177 2.25E-44 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AP3564_10680 23e5082d7a463e6871a5d0b3591eb106 185 Pfam PF00578 AhpC/TSA family 48 166 5.8E-34 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AP3564_12635 f16c4f8565bb2f4b4e4cdfe24c388ce6 291 SMART SM00382 25 203 5.4E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_12635 f16c4f8565bb2f4b4e4cdfe24c388ce6 291 SUPERFAMILY SSF52540 2 199 3.65E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_12635 f16c4f8565bb2f4b4e4cdfe24c388ce6 291 ProSitePatterns PS00211 ABC transporters family signature. 118 132 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_12635 f16c4f8565bb2f4b4e4cdfe24c388ce6 291 Gene3D G3DSA:3.40.50.300 1 210 4.6E-50 T 13-10-2018 AP3564_12635 f16c4f8565bb2f4b4e4cdfe24c388ce6 291 Pfam PF00005 ABC transporter 16 146 9.9E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_14490 36def579fdfa43e92737974eb68fa1ac 485 Gene3D G3DSA:1.10.287.130 241 318 8.1E-13 T 13-10-2018 AP3564_14490 36def579fdfa43e92737974eb68fa1ac 485 SMART SM00387 360 471 6.0E-20 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_14490 36def579fdfa43e92737974eb68fa1ac 485 SUPERFAMILY SSF55874 302 468 7.6E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_14490 36def579fdfa43e92737974eb68fa1ac 485 Gene3D G3DSA:1.20.1480.50 157 240 3.3E-6 T 13-10-2018 AP3564_14490 36def579fdfa43e92737974eb68fa1ac 485 SMART SM00304 186 238 5.2E-5 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AP3564_14490 36def579fdfa43e92737974eb68fa1ac 485 SMART SM00388 246 313 1.2E-8 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AP3564_14490 36def579fdfa43e92737974eb68fa1ac 485 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 361 469 3.8E-18 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_14490 36def579fdfa43e92737974eb68fa1ac 485 Pfam PF00512 His Kinase A (phospho-acceptor) domain 250 310 2.8E-7 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AP3564_14490 36def579fdfa43e92737974eb68fa1ac 485 SUPERFAMILY SSF47384 229 312 5.3E-14 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AP3564_14490 36def579fdfa43e92737974eb68fa1ac 485 SUPERFAMILY SSF158472 189 237 3.66E-5 T 13-10-2018 AP3564_14490 36def579fdfa43e92737974eb68fa1ac 485 PRINTS PR00344 Bacterial sensor protein C-terminal signature 418 428 4.4E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_14490 36def579fdfa43e92737974eb68fa1ac 485 PRINTS PR00344 Bacterial sensor protein C-terminal signature 431 449 4.4E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_14490 36def579fdfa43e92737974eb68fa1ac 485 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 414 4.4E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_14490 36def579fdfa43e92737974eb68fa1ac 485 Gene3D G3DSA:3.30.565.10 319 472 2.3E-27 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_18015 4862deab79375bfb2c05373fdcd552f5 124 SMART SM00450 27 122 7.5E-32 T 13-10-2018 IPR001763 Rhodanese-like domain AP3564_18015 4862deab79375bfb2c05373fdcd552f5 124 Pfam PF00581 Rhodanese-like domain 32 117 4.3E-22 T 13-10-2018 IPR001763 Rhodanese-like domain AP3564_18015 4862deab79375bfb2c05373fdcd552f5 124 SUPERFAMILY SSF52821 6 117 5.24E-36 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily AP3564_18015 4862deab79375bfb2c05373fdcd552f5 124 Gene3D G3DSA:3.40.250.10 30 123 1.2E-31 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily AP3564_16490 1ae67cfe71d35dba90c2e23616441ed0 259 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 82 115 - T 13-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AP3564_16490 1ae67cfe71d35dba90c2e23616441ed0 259 SUPERFAMILY SSF53790 2 246 1.24E-79 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 AP3564_16490 1ae67cfe71d35dba90c2e23616441ed0 259 Gene3D G3DSA:3.40.1010.10 1 117 2.4E-44 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 AP3564_16490 1ae67cfe71d35dba90c2e23616441ed0 259 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 3 214 6.5E-51 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 AP3564_16490 1ae67cfe71d35dba90c2e23616441ed0 259 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 7 21 - T 13-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AP3564_16490 1ae67cfe71d35dba90c2e23616441ed0 259 Gene3D G3DSA:3.30.950.10 118 255 4.1E-43 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 AP3564_16490 1ae67cfe71d35dba90c2e23616441ed0 259 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 2 238 3.1E-96 T 13-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AP3564_11930 ce7db1c0b771cd35611134bd12e7c53e 407 SUPERFAMILY SSF141868 4 239 1.83E-45 T 13-10-2018 IPR035919 EAL domain superfamily AP3564_11930 ce7db1c0b771cd35611134bd12e7c53e 407 Gene3D G3DSA:3.20.20.450 2 230 8.5E-68 T 13-10-2018 IPR035919 EAL domain superfamily AP3564_11930 ce7db1c0b771cd35611134bd12e7c53e 407 SUPERFAMILY SSF103190 264 404 2.51E-44 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily AP3564_11930 ce7db1c0b771cd35611134bd12e7c53e 407 Gene3D G3DSA:3.30.450.20 292 407 1.1E-47 T 13-10-2018 AP3564_11930 ce7db1c0b771cd35611134bd12e7c53e 407 Gene3D G3DSA:1.20.5.170 247 291 1.5E-15 T 13-10-2018 AP3564_11930 ce7db1c0b771cd35611134bd12e7c53e 407 Pfam PF10388 EAL-domain associated signalling protein domain 241 407 2.3E-78 T 13-10-2018 IPR018842 YkuI, C-terminal AP3564_11930 ce7db1c0b771cd35611134bd12e7c53e 407 SMART SM00052 1 242 2.0E-27 T 13-10-2018 IPR001633 EAL domain AP3564_11930 ce7db1c0b771cd35611134bd12e7c53e 407 Pfam PF00563 EAL domain 14 235 8.2E-32 T 13-10-2018 IPR001633 EAL domain AP3564_13265 dd3237d7e8bc218bfccc80109e735f90 285 Pfam PF00440 Bacterial regulatory proteins, tetR family 8 52 1.1E-16 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_13265 dd3237d7e8bc218bfccc80109e735f90 285 SUPERFAMILY SSF46689 4 79 6.16E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_13265 dd3237d7e8bc218bfccc80109e735f90 285 Gene3D G3DSA:1.10.357.10 1 196 1.5E-32 T 13-10-2018 AP3564_13265 dd3237d7e8bc218bfccc80109e735f90 285 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 29 52 2.4E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_13265 dd3237d7e8bc218bfccc80109e735f90 285 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 8 21 2.4E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_16065 7abe0a971fc40aa3ac58d92c214418e2 233 Gene3D G3DSA:3.40.50.10490 10 215 2.3E-98 T 13-10-2018 AP3564_16065 7abe0a971fc40aa3ac58d92c214418e2 233 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 225 44.401 T 13-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_16065 7abe0a971fc40aa3ac58d92c214418e2 233 Pfam PF00318 Ribosomal protein S2 9 224 5.7E-104 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_16065 7abe0a971fc40aa3ac58d92c214418e2 233 PRINTS PR00395 Ribosomal protein S2 signature 87 104 3.6E-42 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_16065 7abe0a971fc40aa3ac58d92c214418e2 233 PRINTS PR00395 Ribosomal protein S2 signature 175 186 3.6E-42 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_16065 7abe0a971fc40aa3ac58d92c214418e2 233 PRINTS PR00395 Ribosomal protein S2 signature 158 175 3.6E-42 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_16065 7abe0a971fc40aa3ac58d92c214418e2 233 PRINTS PR00395 Ribosomal protein S2 signature 37 46 3.6E-42 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_16065 7abe0a971fc40aa3ac58d92c214418e2 233 PRINTS PR00395 Ribosomal protein S2 signature 6 24 3.6E-42 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_16065 7abe0a971fc40aa3ac58d92c214418e2 233 PRINTS PR00395 Ribosomal protein S2 signature 196 210 3.6E-42 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_16065 7abe0a971fc40aa3ac58d92c214418e2 233 SUPERFAMILY SSF52313 6 228 1.11E-101 T 13-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily AP3564_16065 7abe0a971fc40aa3ac58d92c214418e2 233 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 3 226 6.0E-114 T 13-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_16065 7abe0a971fc40aa3ac58d92c214418e2 233 Gene3D G3DSA:1.10.287.610 97 152 2.3E-98 T 13-10-2018 AP3564_16065 7abe0a971fc40aa3ac58d92c214418e2 233 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 6 17 - T 13-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 AP3564_03915 10dac0cbd687da9baa8978ff7a99d92d 236 SUPERFAMILY SSF81336 71 228 3.14E-40 T 13-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03915 10dac0cbd687da9baa8978ff7a99d92d 236 Gene3D G3DSA:1.20.120.220 71 236 4.1E-40 T 13-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03915 10dac0cbd687da9baa8978ff7a99d92d 236 Hamap MF_01393 ATP synthase subunit a [atpB]. 13 235 13.941 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03915 10dac0cbd687da9baa8978ff7a99d92d 236 PRINTS PR00123 ATP synthase A subunit signature 146 161 3.3E-18 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03915 10dac0cbd687da9baa8978ff7a99d92d 236 PRINTS PR00123 ATP synthase A subunit signature 162 184 3.3E-18 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03915 10dac0cbd687da9baa8978ff7a99d92d 236 PRINTS PR00123 ATP synthase A subunit signature 215 230 3.3E-18 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03915 10dac0cbd687da9baa8978ff7a99d92d 236 PRINTS PR00123 ATP synthase A subunit signature 78 94 3.3E-18 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03915 10dac0cbd687da9baa8978ff7a99d92d 236 ProSitePatterns PS00449 ATP synthase a subunit signature. 165 174 - T 13-10-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03915 10dac0cbd687da9baa8978ff7a99d92d 236 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 15 231 2.2E-48 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03915 10dac0cbd687da9baa8978ff7a99d92d 236 Pfam PF00119 ATP synthase A chain 20 228 8.0E-57 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_00825 47be0d29b6796ca77f738676ac2dcf98 667 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 13 661 9.5E-282 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AP3564_00825 47be0d29b6796ca77f738676ac2dcf98 667 Gene3D G3DSA:1.10.287.610 1 72 7.1E-30 T 13-10-2018 AP3564_00825 47be0d29b6796ca77f738676ac2dcf98 667 Gene3D G3DSA:1.10.150.20 426 498 2.3E-31 T 13-10-2018 AP3564_00825 47be0d29b6796ca77f738676ac2dcf98 667 PIRSF PIRSF001604 1 667 1.7E-266 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AP3564_00825 47be0d29b6796ca77f738676ac2dcf98 667 SMART SM00532 5 442 3.2E-294 T 13-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 AP3564_00825 47be0d29b6796ca77f738676ac2dcf98 667 SUPERFAMILY SSF52113 589 665 3.27E-20 T 13-10-2018 IPR036420 BRCT domain superfamily AP3564_00825 47be0d29b6796ca77f738676ac2dcf98 667 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 592 663 5.3E-14 T 13-10-2018 IPR001357 BRCT domain AP3564_00825 47be0d29b6796ca77f738676ac2dcf98 667 Gene3D G3DSA:1.10.150.20 499 580 5.1E-30 T 13-10-2018 AP3564_00825 47be0d29b6796ca77f738676ac2dcf98 667 Gene3D G3DSA:3.30.470.90 73 312 6.2E-103 T 13-10-2018 AP3564_00825 47be0d29b6796ca77f738676ac2dcf98 667 Hamap MF_01588 DNA ligase [ligA]. 4 665 54.789 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AP3564_00825 47be0d29b6796ca77f738676ac2dcf98 667 SUPERFAMILY SSF56091 5 313 7.34E-126 T 13-10-2018 AP3564_00825 47be0d29b6796ca77f738676ac2dcf98 667 Gene3D G3DSA:3.40.50.10190 589 667 1.1E-25 T 13-10-2018 IPR036420 BRCT domain superfamily AP3564_00825 47be0d29b6796ca77f738676ac2dcf98 667 SUPERFAMILY SSF50249 312 395 7.54E-28 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_00825 47be0d29b6796ca77f738676ac2dcf98 667 Pfam PF12826 Helix-hairpin-helix motif 504 567 2.1E-25 T 13-10-2018 AP3564_00825 47be0d29b6796ca77f738676ac2dcf98 667 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 5 313 5.5E-134 T 13-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 AP3564_00825 47be0d29b6796ca77f738676ac2dcf98 667 Gene3D G3DSA:2.20.70.80 386 423 2.2E-12 T 13-10-2018 AP3564_00825 47be0d29b6796ca77f738676ac2dcf98 667 SMART SM00278 474 493 87.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AP3564_00825 47be0d29b6796ca77f738676ac2dcf98 667 SMART SM00278 440 459 120.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AP3564_00825 47be0d29b6796ca77f738676ac2dcf98 667 SMART SM00278 538 557 2.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AP3564_00825 47be0d29b6796ca77f738676ac2dcf98 667 SMART SM00292 591 667 1.5E-13 T 13-10-2018 IPR001357 BRCT domain AP3564_00825 47be0d29b6796ca77f738676ac2dcf98 667 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 326 341 - T 13-10-2018 IPR033136 NAD-dependent DNA ligase, conserved site AP3564_00825 47be0d29b6796ca77f738676ac2dcf98 667 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 114 143 - T 13-10-2018 IPR018239 NAD-dependent DNA ligase, active site AP3564_00825 47be0d29b6796ca77f738676ac2dcf98 667 Gene3D G3DSA:2.40.50.140 313 385 1.3E-29 T 13-10-2018 AP3564_00825 47be0d29b6796ca77f738676ac2dcf98 667 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 317 393 2.9E-33 T 13-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 AP3564_00825 47be0d29b6796ca77f738676ac2dcf98 667 SUPERFAMILY SSF47781 399 579 1.56E-67 T 13-10-2018 IPR010994 RuvA domain 2-like AP3564_00825 47be0d29b6796ca77f738676ac2dcf98 667 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 402 428 2.2E-11 T 13-10-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 AP3564_00825 47be0d29b6796ca77f738676ac2dcf98 667 Pfam PF14520 Helix-hairpin-helix domain 442 491 9.1E-4 T 13-10-2018 AP3564_08555 550f7a74f00d18bce103afc51ec03ac8 195 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 3 195 42.296 T 13-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 AP3564_08555 550f7a74f00d18bce103afc51ec03ac8 195 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 157 169 - T 13-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 AP3564_08555 550f7a74f00d18bce103afc51ec03ac8 195 Gene3D G3DSA:3.30.230.40 91 195 5.0E-39 T 13-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 AP3564_08555 550f7a74f00d18bce103afc51ec03ac8 195 SUPERFAMILY SSF54211 3 87 3.92E-32 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AP3564_08555 550f7a74f00d18bce103afc51ec03ac8 195 Gene3D G3DSA:3.30.230.40 1 90 9.1E-37 T 13-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 AP3564_08555 550f7a74f00d18bce103afc51ec03ac8 195 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 62 75 - T 13-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 AP3564_08555 550f7a74f00d18bce103afc51ec03ac8 195 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 32 175 2.2E-62 T 13-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 AP3564_08555 550f7a74f00d18bce103afc51ec03ac8 195 SUPERFAMILY SSF54211 88 179 8.6E-34 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AP3564_19265 650687f7f410464171910ddd0dbdd954 168 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 3 72 2.2E-32 T 13-10-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AP3564_19265 650687f7f410464171910ddd0dbdd954 168 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 1 166 29.803 T 13-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AP3564_19265 650687f7f410464171910ddd0dbdd954 168 Gene3D G3DSA:3.10.20.80 1 74 9.6E-34 T 13-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AP3564_19265 650687f7f410464171910ddd0dbdd954 168 ProSitePatterns PS00938 Initiation factor 3 signature. 54 67 - T 13-10-2018 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 AP3564_19265 650687f7f410464171910ddd0dbdd954 168 SUPERFAMILY SSF54364 2 74 2.62E-29 T 13-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AP3564_19265 650687f7f410464171910ddd0dbdd954 168 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 3 165 5.3E-75 T 13-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AP3564_19265 650687f7f410464171910ddd0dbdd954 168 SUPERFAMILY SSF55200 78 167 7.72E-33 T 13-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 AP3564_19265 650687f7f410464171910ddd0dbdd954 168 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 79 164 1.9E-38 T 13-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 AP3564_19265 650687f7f410464171910ddd0dbdd954 168 Gene3D G3DSA:3.30.110.10 75 168 4.0E-38 T 13-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 AP3564_12825 b6616a9ec42d60e4f502324c838e441c 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 84 264 1.2E-99 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AP3564_12825 b6616a9ec42d60e4f502324c838e441c 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 2 85 1.7E-42 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AP3564_12825 b6616a9ec42d60e4f502324c838e441c 264 ProSitePatterns PS00091 Thymidylate synthase active site. 126 154 - T 13-10-2018 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AP3564_12825 b6616a9ec42d60e4f502324c838e441c 264 SUPERFAMILY SSF55831 1 264 2.22E-135 T 13-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AP3564_12825 b6616a9ec42d60e4f502324c838e441c 264 Hamap MF_00008 Thymidylate synthase [thyA]. 1 264 41.561 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AP3564_12825 b6616a9ec42d60e4f502324c838e441c 264 PRINTS PR00108 Thymidylate synthase family signature 141 156 5.4E-51 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AP3564_12825 b6616a9ec42d60e4f502324c838e441c 264 PRINTS PR00108 Thymidylate synthase family signature 197 214 5.4E-51 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AP3564_12825 b6616a9ec42d60e4f502324c838e441c 264 PRINTS PR00108 Thymidylate synthase family signature 115 134 5.4E-51 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AP3564_12825 b6616a9ec42d60e4f502324c838e441c 264 PRINTS PR00108 Thymidylate synthase family signature 159 185 5.4E-51 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AP3564_12825 b6616a9ec42d60e4f502324c838e441c 264 PRINTS PR00108 Thymidylate synthase family signature 42 63 5.4E-51 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AP3564_12825 b6616a9ec42d60e4f502324c838e441c 264 Pfam PF00303 Thymidylate synthase 2 264 9.8E-133 T 13-10-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AP3564_12825 b6616a9ec42d60e4f502324c838e441c 264 Gene3D G3DSA:3.30.572.10 1 264 8.0E-138 T 13-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AP3564_19155 d978d538a10a7e20818415a324e2fbfa 104 TIGRFAM TIGR01068 thioredoxin: thioredoxin 7 103 7.2E-41 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AP3564_19155 d978d538a10a7e20818415a324e2fbfa 104 Pfam PF00085 Thioredoxin 3 103 1.6E-32 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 AP3564_19155 d978d538a10a7e20818415a324e2fbfa 104 SUPERFAMILY SSF52833 2 104 4.71E-39 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AP3564_19155 d978d538a10a7e20818415a324e2fbfa 104 ProSitePatterns PS00194 Thioredoxin family active site. 21 39 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AP3564_19155 d978d538a10a7e20818415a324e2fbfa 104 PIRSF PIRSF000077 1 104 7.4E-44 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AP3564_19155 d978d538a10a7e20818415a324e2fbfa 104 PRINTS PR00421 Thioredoxin family signature 20 28 2.1E-9 T 13-10-2018 AP3564_19155 d978d538a10a7e20818415a324e2fbfa 104 PRINTS PR00421 Thioredoxin family signature 28 37 2.1E-9 T 13-10-2018 AP3564_19155 d978d538a10a7e20818415a324e2fbfa 104 PRINTS PR00421 Thioredoxin family signature 68 79 2.1E-9 T 13-10-2018 AP3564_19155 d978d538a10a7e20818415a324e2fbfa 104 Gene3D G3DSA:3.40.30.10 1 104 2.1E-37 T 13-10-2018 AP3564_11055 a421164a1c0a26604fb083e5a7d2708f 624 Hamap MF_00505 Chaperone protein HtpG [htpG]. 2 623 27.091 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 AP3564_11055 a421164a1c0a26604fb083e5a7d2708f 624 Gene3D G3DSA:3.30.565.10 1 228 9.1E-75 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_11055 a421164a1c0a26604fb083e5a7d2708f 624 Pfam PF00183 Hsp90 protein 216 622 8.3E-112 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 AP3564_11055 a421164a1c0a26604fb083e5a7d2708f 624 Pfam PF00183 Hsp90 protein 184 227 2.7E-6 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 AP3564_11055 a421164a1c0a26604fb083e5a7d2708f 624 Gene3D G3DSA:3.40.50.11260 403 488 1.2E-27 T 13-10-2018 AP3564_11055 a421164a1c0a26604fb083e5a7d2708f 624 SUPERFAMILY SSF110942 508 623 5.75E-30 T 13-10-2018 IPR037196 HSP90, C-terminal domain AP3564_11055 a421164a1c0a26604fb083e5a7d2708f 624 SUPERFAMILY SSF55874 1 211 5.37E-64 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_11055 a421164a1c0a26604fb083e5a7d2708f 624 Gene3D G3DSA:3.30.230.80 235 402 1.7E-57 T 13-10-2018 AP3564_11055 a421164a1c0a26604fb083e5a7d2708f 624 PIRSF PIRSF002583 1 624 2.5E-207 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 AP3564_11055 a421164a1c0a26604fb083e5a7d2708f 624 Gene3D G3DSA:1.20.120.790 491 624 1.3E-37 T 13-10-2018 IPR037196 HSP90, C-terminal domain AP3564_11055 a421164a1c0a26604fb083e5a7d2708f 624 SUPERFAMILY SSF54211 236 488 1.06E-83 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AP3564_11055 a421164a1c0a26604fb083e5a7d2708f 624 PRINTS PR00775 90kDa heat shock protein signature 2 22 4.4E-57 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AP3564_11055 a421164a1c0a26604fb083e5a7d2708f 624 PRINTS PR00775 90kDa heat shock protein signature 188 206 4.4E-57 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AP3564_11055 a421164a1c0a26604fb083e5a7d2708f 624 PRINTS PR00775 90kDa heat shock protein signature 115 137 4.4E-57 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AP3564_11055 a421164a1c0a26604fb083e5a7d2708f 624 PRINTS PR00775 90kDa heat shock protein signature 23 45 4.4E-57 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AP3564_11055 a421164a1c0a26604fb083e5a7d2708f 624 PRINTS PR00775 90kDa heat shock protein signature 165 182 4.4E-57 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AP3564_11055 a421164a1c0a26604fb083e5a7d2708f 624 PRINTS PR00775 90kDa heat shock protein signature 90 107 4.4E-57 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AP3564_11055 a421164a1c0a26604fb083e5a7d2708f 624 PRINTS PR00775 90kDa heat shock protein signature 72 89 4.4E-57 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AP3564_11055 a421164a1c0a26604fb083e5a7d2708f 624 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 26 151 9.3E-13 T 13-10-2018 AP3564_17255 fc0d7c7589b08632249594fa17deb0e7 436 SUPERFAMILY SSF52540 138 435 8.77E-73 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_17255 fc0d7c7589b08632249594fa17deb0e7 436 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 132 6.2E-25 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AP3564_17255 fc0d7c7589b08632249594fa17deb0e7 436 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 175 339 2.3E-26 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AP3564_17255 fc0d7c7589b08632249594fa17deb0e7 436 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 353 433 5.1E-36 T 13-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like AP3564_17255 fc0d7c7589b08632249594fa17deb0e7 436 Gene3D G3DSA:3.40.50.300 171 352 1.6E-55 T 13-10-2018 AP3564_17255 fc0d7c7589b08632249594fa17deb0e7 436 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 178 198 3.2E-5 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AP3564_17255 fc0d7c7589b08632249594fa17deb0e7 436 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 248 266 3.2E-5 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AP3564_17255 fc0d7c7589b08632249594fa17deb0e7 436 PIRSF PIRSF006485 2 436 2.9E-177 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 AP3564_17255 fc0d7c7589b08632249594fa17deb0e7 436 SUPERFAMILY SSF52540 5 164 1.01E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_17255 fc0d7c7589b08632249594fa17deb0e7 436 Hamap MF_00195 GTPase Der [der]. 3 436 41.503 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 AP3564_17255 fc0d7c7589b08632249594fa17deb0e7 436 Gene3D G3DSA:3.40.50.300 1 163 4.5E-49 T 13-10-2018 AP3564_17255 fc0d7c7589b08632249594fa17deb0e7 436 Pfam PF01926 50S ribosome-binding GTPase 6 120 9.9E-26 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AP3564_17255 fc0d7c7589b08632249594fa17deb0e7 436 Pfam PF01926 50S ribosome-binding GTPase 179 295 2.9E-26 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AP3564_17255 fc0d7c7589b08632249594fa17deb0e7 436 Gene3D G3DSA:3.30.300.20 353 436 4.2E-37 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta AP3564_17255 fc0d7c7589b08632249594fa17deb0e7 436 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 4 432 2.1E-181 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 AP3564_18445 d66c99d4825b668d0887b66af20dcadd 448 Pfam PF01938 TRAM domain 375 436 1.5E-4 T 13-10-2018 IPR002792 TRAM domain AP3564_18445 d66c99d4825b668d0887b66af20dcadd 448 Pfam PF00919 Uncharacterized protein family UPF0004 4 98 2.0E-25 T 13-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 AP3564_18445 d66c99d4825b668d0887b66af20dcadd 448 SUPERFAMILY SSF102114 120 363 8.24E-59 T 13-10-2018 AP3564_18445 d66c99d4825b668d0887b66af20dcadd 448 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 3 431 6.1E-149 T 13-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 AP3564_18445 d66c99d4825b668d0887b66af20dcadd 448 Gene3D G3DSA:3.40.50.12160 3 134 1.9E-24 T 13-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily AP3564_18445 d66c99d4825b668d0887b66af20dcadd 448 TIGRFAM TIGR01579 MiaB-like-C: MiaB-like tRNA modifying enzyme 6 422 1.5E-140 T 13-10-2018 IPR006467 MiaB-like tRNA modifying enzyme GO:0016740 AP3564_18445 d66c99d4825b668d0887b66af20dcadd 448 Pfam PF04055 Radical SAM superfamily 149 319 6.0E-29 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AP3564_18445 d66c99d4825b668d0887b66af20dcadd 448 SMART SM00729 143 361 1.0E-62 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AP3564_18445 d66c99d4825b668d0887b66af20dcadd 448 Gene3D G3DSA:3.80.30.20 140 375 3.2E-88 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe AP3564_18445 d66c99d4825b668d0887b66af20dcadd 448 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 147 167 - T 13-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 AP3564_06110 8c2e741b80ba413aee0bd0f66618e18d 374 SUPERFAMILY SSF51679 1 347 1.7E-94 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AP3564_06110 8c2e741b80ba413aee0bd0f66618e18d 374 TIGRFAM TIGR03565 alk_sulf_monoox: alkanesulfonate monooxygenase, FMNH(2)-dependent 2 347 8.2E-179 T 13-10-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 AP3564_06110 8c2e741b80ba413aee0bd0f66618e18d 374 Pfam PF00296 Luciferase-like monooxygenase 1 323 2.3E-87 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AP3564_06110 8c2e741b80ba413aee0bd0f66618e18d 374 Gene3D G3DSA:3.20.20.30 1 360 2.8E-140 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AP3564_06110 8c2e741b80ba413aee0bd0f66618e18d 374 Hamap MF_01229 Alkanesulfonate monooxygenase [ssuD]. 1 373 74.78 T 13-10-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 AP3564_15945 eaf639aa653d0b4fd9d5a3a41f1b2c21 304 Gene3D G3DSA:3.40.50.720 7 285 1.9E-106 T 13-10-2018 AP3564_15945 eaf639aa653d0b4fd9d5a3a41f1b2c21 304 SUPERFAMILY SSF51735 132 248 4.06E-17 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_15945 eaf639aa653d0b4fd9d5a3a41f1b2c21 304 TIGRFAM TIGR02853 spore_dpaA: dipicolinic acid synthetase, A subunit 5 289 4.0E-132 T 13-10-2018 IPR014215 Dipicolinic acid synthetase subunit A AP3564_15945 eaf639aa653d0b4fd9d5a3a41f1b2c21 304 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 152 291 1.0E-8 T 13-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain AP3564_15945 eaf639aa653d0b4fd9d5a3a41f1b2c21 304 Gene3D G3DSA:3.40.50.720 126 272 1.9E-106 T 13-10-2018 AP3564_15945 eaf639aa653d0b4fd9d5a3a41f1b2c21 304 Pfam PF16924 Dipicolinate synthase subunit A N-terminal domain 6 122 3.5E-28 T 13-10-2018 IPR031629 Dipicolinate synthase subunit A, N-terminal AP3564_02765 19f6fef7e91c7ebce7f10e081b027f62 377 SMART SM00567 E-Z type HEAT repeats 330 359 0.0045 T 13-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 AP3564_02765 19f6fef7e91c7ebce7f10e081b027f62 377 SMART SM00567 E-Z type HEAT repeats 298 327 68.0 T 13-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 AP3564_02765 19f6fef7e91c7ebce7f10e081b027f62 377 Pfam PF13646 HEAT repeats 300 372 8.6E-13 T 13-10-2018 AP3564_02765 19f6fef7e91c7ebce7f10e081b027f62 377 SUPERFAMILY SSF48371 265 374 3.54E-13 T 13-10-2018 IPR016024 Armadillo-type fold AP3564_02765 19f6fef7e91c7ebce7f10e081b027f62 377 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 3 309 43.453 T 13-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 AP3564_02765 19f6fef7e91c7ebce7f10e081b027f62 377 SUPERFAMILY SSF54862 164 255 2.68E-16 T 13-10-2018 AP3564_02765 19f6fef7e91c7ebce7f10e081b027f62 377 Pfam PF13484 4Fe-4S double cluster binding domain 187 250 2.8E-15 T 13-10-2018 AP3564_02765 19f6fef7e91c7ebce7f10e081b027f62 377 Pfam PF08331 Domain of unknown function (DUF1730) 57 135 1.9E-18 T 13-10-2018 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 AP3564_02765 19f6fef7e91c7ebce7f10e081b027f62 377 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 188 199 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AP3564_02765 19f6fef7e91c7ebce7f10e081b027f62 377 Gene3D G3DSA:1.25.10.10 295 377 4.5E-12 T 13-10-2018 IPR011989 Armadillo-like helical AP3564_02765 19f6fef7e91c7ebce7f10e081b027f62 377 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 10 342 4.9E-132 T 13-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 AP3564_02765 19f6fef7e91c7ebce7f10e081b027f62 377 Gene3D G3DSA:3.30.70.20 181 262 4.2E-5 T 13-10-2018 AP3564_13700 4f27d627c767fef5752ba6e59c822911 240 Pfam PF00106 short chain dehydrogenase 5 193 4.3E-61 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_13700 4f27d627c767fef5752ba6e59c822911 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 9.9E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_13700 4f27d627c767fef5752ba6e59c822911 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 9.9E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_13700 4f27d627c767fef5752ba6e59c822911 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 9.9E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_13700 4f27d627c767fef5752ba6e59c822911 240 Gene3D G3DSA:3.40.50.720 1 237 3.2E-73 T 13-10-2018 AP3564_13700 4f27d627c767fef5752ba6e59c822911 240 PIRSF PIRSF000126 1 237 4.8E-53 T 13-10-2018 AP3564_13700 4f27d627c767fef5752ba6e59c822911 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 5.1E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_13700 4f27d627c767fef5752ba6e59c822911 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 199 219 5.1E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_13700 4f27d627c767fef5752ba6e59c822911 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 5.1E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_13700 4f27d627c767fef5752ba6e59c822911 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 5.1E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_13700 4f27d627c767fef5752ba6e59c822911 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 5.1E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_13700 4f27d627c767fef5752ba6e59c822911 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 5.1E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_13700 4f27d627c767fef5752ba6e59c822911 240 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AP3564_13700 4f27d627c767fef5752ba6e59c822911 240 SUPERFAMILY SSF51735 2 221 1.59E-70 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_13020 0bf4fc2cb02c702201e3e59c72c5b81b 292 Pfam PF13612 Transposase DDE domain 111 267 1.1E-27 T 13-10-2018 IPR025668 Transposase DDE domain AP3564_18100 6652d107f2dbbad1dd6a401618c2ccad 214 Pfam PF00753 Metallo-beta-lactamase superfamily 9 192 2.7E-32 T 13-10-2018 IPR001279 Metallo-beta-lactamase AP3564_18100 6652d107f2dbbad1dd6a401618c2ccad 214 Gene3D G3DSA:3.60.15.10 1 213 1.2E-63 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AP3564_18100 6652d107f2dbbad1dd6a401618c2ccad 214 SUPERFAMILY SSF56281 1 209 1.44E-55 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AP3564_18100 6652d107f2dbbad1dd6a401618c2ccad 214 SMART SM00849 12 192 1.9E-42 T 13-10-2018 IPR001279 Metallo-beta-lactamase AP3564_10345 2466925b7edcf62e277a313bbce22460 387 Gene3D G3DSA:3.40.640.10 1 248 3.4E-96 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_10345 2466925b7edcf62e277a313bbce22460 387 SUPERFAMILY SSF53383 11 382 8.34E-115 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_10345 2466925b7edcf62e277a313bbce22460 387 Gene3D G3DSA:3.90.1150.10 249 383 5.2E-44 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_10345 2466925b7edcf62e277a313bbce22460 387 PIRSF PIRSF001434 1 384 4.8E-145 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AP3564_10345 2466925b7edcf62e277a313bbce22460 387 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 8 380 9.3E-151 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AP3564_10345 2466925b7edcf62e277a313bbce22460 387 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 191 205 - T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AP3564_09175 4a73413fb62922bf1677bd4fb96ba8c7 395 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 171 199 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AP3564_09175 4a73413fb62922bf1677bd4fb96ba8c7 395 Pfam PF00465 Iron-containing alcohol dehydrogenase 7 376 7.0E-118 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 AP3564_09175 4a73413fb62922bf1677bd4fb96ba8c7 395 Gene3D G3DSA:3.40.50.1970 3 182 4.8E-53 T 13-10-2018 AP3564_09175 4a73413fb62922bf1677bd4fb96ba8c7 395 SUPERFAMILY SSF56796 4 384 3.79E-117 T 13-10-2018 AP3564_09175 4a73413fb62922bf1677bd4fb96ba8c7 395 Gene3D G3DSA:1.20.1090.10 184 386 4.5E-66 T 13-10-2018 AP3564_09255 e9782ab5dc56da753360be6b8246e5ee 135 Pfam PF04134 Protein of unknown function, DUF393 9 118 8.3E-34 T 13-10-2018 IPR007263 Protein of unknown function DUF393 AP3564_09065 089bfeb693789ca853563cdd8769f199 353 PIRSF PIRSF038945 1 348 9.5E-161 T 13-10-2018 IPR026260 Threonine synthase, bacterial/archaeal GO:0004795|GO:0009088 KEGG: 00260+4.2.3.1|KEGG: 00750+4.2.3.1 AP3564_09065 089bfeb693789ca853563cdd8769f199 353 Gene3D G3DSA:3.40.50.1100 59 155 5.4E-126 T 13-10-2018 AP3564_09065 089bfeb693789ca853563cdd8769f199 353 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 51 64 - T 13-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 AP3564_09065 089bfeb693789ca853563cdd8769f199 353 SUPERFAMILY SSF53686 5 348 6.16E-108 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AP3564_09065 089bfeb693789ca853563cdd8769f199 353 Gene3D G3DSA:3.40.50.1100 9 322 5.4E-126 T 13-10-2018 AP3564_09065 089bfeb693789ca853563cdd8769f199 353 TIGRFAM TIGR00260 thrC: threonine synthase 7 323 1.7E-106 T 13-10-2018 IPR004450 Threonine synthase-like AP3564_09065 089bfeb693789ca853563cdd8769f199 353 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 24 316 4.0E-77 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AP3564_19120 2a10032079098ff0e8e51b779e13ec7a 144 Pfam PF01047 MarR family 35 93 9.4E-19 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_19120 2a10032079098ff0e8e51b779e13ec7a 144 SUPERFAMILY SSF46785 11 142 6.37E-32 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_19120 2a10032079098ff0e8e51b779e13ec7a 144 PRINTS PR00598 Bacterial regulatory protein MarR family signature 118 138 1.2E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_19120 2a10032079098ff0e8e51b779e13ec7a 144 PRINTS PR00598 Bacterial regulatory protein MarR family signature 69 84 1.2E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_19120 2a10032079098ff0e8e51b779e13ec7a 144 PRINTS PR00598 Bacterial regulatory protein MarR family signature 88 104 1.2E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_19120 2a10032079098ff0e8e51b779e13ec7a 144 PRINTS PR00598 Bacterial regulatory protein MarR family signature 52 68 1.2E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_19120 2a10032079098ff0e8e51b779e13ec7a 144 SMART SM00347 28 128 1.7E-27 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_19120 2a10032079098ff0e8e51b779e13ec7a 144 Gene3D G3DSA:1.10.10.10 4 144 3.6E-37 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_11650 3c807e04b447439e9095db40e3ff0624 388 PIRSF PIRSF026508 17 388 1.1E-122 T 13-10-2018 IPR008863 Toxic anion resistance AP3564_11650 3c807e04b447439e9095db40e3ff0624 388 Pfam PF05816 Toxic anion resistance protein (TelA) 56 383 2.4E-129 T 13-10-2018 IPR008863 Toxic anion resistance AP3564_13810 25a6534e2ba23f81a968b75df3775445 588 Pfam PF16657 Maltogenic Amylase, C-terminal domain 507 582 4.0E-15 T 13-10-2018 IPR032091 Maltogenic Amylase, C-terminal AP3564_13810 25a6534e2ba23f81a968b75df3775445 588 Gene3D G3DSA:3.90.400.10 246 299 1.3E-169 T 13-10-2018 AP3564_13810 25a6534e2ba23f81a968b75df3775445 588 Gene3D G3DSA:2.60.40.1180 507 588 1.8E-27 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta AP3564_13810 25a6534e2ba23f81a968b75df3775445 588 Pfam PF00128 Alpha amylase, catalytic domain 173 469 7.2E-91 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AP3564_13810 25a6534e2ba23f81a968b75df3775445 588 SMART SM00642 139 497 1.6E-133 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AP3564_13810 25a6534e2ba23f81a968b75df3775445 588 SUPERFAMILY SSF51445 68 503 1.23E-135 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily AP3564_13810 25a6534e2ba23f81a968b75df3775445 588 Gene3D G3DSA:3.20.20.80 133 498 1.3E-169 T 13-10-2018 AP3564_13810 25a6534e2ba23f81a968b75df3775445 588 Pfam PF02903 Alpha amylase, N-terminal ig-like domain 1 121 1.1E-51 T 13-10-2018 IPR004185 Glycoside hydrolase, family 13, N-terminal Ig-like domain GO:0004553|GO:0005975 AP3564_13810 25a6534e2ba23f81a968b75df3775445 588 PIRSF PIRSF001024 109 576 3.7E-52 T 13-10-2018 IPR013777 Alpha-amylase-like GO:0004556|GO:0005509|GO:0005975 AP3564_13810 25a6534e2ba23f81a968b75df3775445 588 Gene3D G3DSA:2.60.40.10 1 125 2.1E-47 T 13-10-2018 IPR013783 Immunoglobulin-like fold AP3564_13810 25a6534e2ba23f81a968b75df3775445 588 SUPERFAMILY SSF51011 507 587 6.24E-20 T 13-10-2018 AP3564_13365 1b5e2ede15b8a1829929a3bbc6ec1b22 81 SUPERFAMILY SSF55874 2 64 3.01E-7 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_05285 342fc028f50b93e9a2e0efde09fa2e1e 257 Hamap MF_01274 Type III pantothenate kinase [coaX]. 1 254 37.971 T 13-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 AP3564_05285 342fc028f50b93e9a2e0efde09fa2e1e 257 SUPERFAMILY SSF53067 1 122 4.03E-40 T 13-10-2018 AP3564_05285 342fc028f50b93e9a2e0efde09fa2e1e 257 Pfam PF03309 Type III pantothenate kinase 2 206 1.8E-75 T 13-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 AP3564_05285 342fc028f50b93e9a2e0efde09fa2e1e 257 Gene3D G3DSA:3.30.420.40 89 256 1.3E-63 T 13-10-2018 AP3564_05285 342fc028f50b93e9a2e0efde09fa2e1e 257 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 3 250 5.1E-86 T 13-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 AP3564_05285 342fc028f50b93e9a2e0efde09fa2e1e 257 Gene3D G3DSA:3.30.420.40 1 88 1.2E-35 T 13-10-2018 AP3564_05285 342fc028f50b93e9a2e0efde09fa2e1e 257 SUPERFAMILY SSF53067 124 253 1.65E-40 T 13-10-2018 AP3564_17195 bf40b0029381ffbba5485d2c732d6c58 320 Pfam PF00348 Polyprenyl synthetase 31 268 1.4E-68 T 13-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 AP3564_17195 bf40b0029381ffbba5485d2c732d6c58 320 TIGRFAM TIGR02748 GerC3_HepT: heptaprenyl diphosphate synthase component II 2 320 4.1E-157 T 13-10-2018 IPR014119 Heptaprenyl diphosphate synthase component II KEGG: 00900+2.5.1.30|MetaCyc: PWY-5807 AP3564_17195 bf40b0029381ffbba5485d2c732d6c58 320 Gene3D G3DSA:1.10.600.10 7 320 1.6E-99 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily AP3564_17195 bf40b0029381ffbba5485d2c732d6c58 320 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 81 95 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site AP3564_17195 bf40b0029381ffbba5485d2c732d6c58 320 SUPERFAMILY SSF48576 4 319 2.34E-87 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily AP3564_17195 bf40b0029381ffbba5485d2c732d6c58 320 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 203 215 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site AP3564_05260 cfeb338a07d547f01bfc7c8aad44a0e1 243 SUPERFAMILY SSF53300 2 77 7.31E-10 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AP3564_05260 cfeb338a07d547f01bfc7c8aad44a0e1 243 Pfam PF13519 von Willebrand factor type A domain 135 227 9.4E-7 T 13-10-2018 IPR002035 von Willebrand factor, type A AP3564_05260 cfeb338a07d547f01bfc7c8aad44a0e1 243 Pfam PF00092 von Willebrand factor type A domain 1 74 2.0E-7 T 13-10-2018 IPR002035 von Willebrand factor, type A AP3564_05260 cfeb338a07d547f01bfc7c8aad44a0e1 243 SUPERFAMILY SSF53300 131 227 2.23E-10 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AP3564_05260 cfeb338a07d547f01bfc7c8aad44a0e1 243 Gene3D G3DSA:3.40.50.410 1 235 8.6E-59 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AP3564_03660 020d8bda51c72ff08a33c8d666b43223 186 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 1 177 2.0E-95 T 13-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 AP3564_03660 020d8bda51c72ff08a33c8d666b43223 186 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 6 176 7.1E-76 T 13-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 AP3564_03660 020d8bda51c72ff08a33c8d666b43223 186 SUPERFAMILY SSF51182 1 183 2.87E-80 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily AP3564_03660 020d8bda51c72ff08a33c8d666b43223 186 Gene3D G3DSA:2.60.120.10 1 181 1.1E-77 T 13-10-2018 IPR014710 RmlC-like jelly roll fold AP3564_03660 020d8bda51c72ff08a33c8d666b43223 186 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 2 177 1.3E-74 T 13-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 AP3564_16705 e7c7baf36a48f9e70b697a2b58508939 718 Pfam PF03717 Penicillin-binding Protein dimerisation domain 58 218 3.6E-21 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AP3564_16705 e7c7baf36a48f9e70b697a2b58508939 718 SUPERFAMILY SSF56519 56 238 6.02E-44 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 AP3564_16705 e7c7baf36a48f9e70b697a2b58508939 718 Pfam PF00905 Penicillin binding protein transpeptidase domain 267 574 2.4E-87 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AP3564_16705 e7c7baf36a48f9e70b697a2b58508939 718 SUPERFAMILY SSF54184 602 658 2.88E-10 T 13-10-2018 AP3564_16705 e7c7baf36a48f9e70b697a2b58508939 718 Gene3D G3DSA:3.90.1310.10 59 205 2.3E-55 T 13-10-2018 AP3564_16705 e7c7baf36a48f9e70b697a2b58508939 718 Gene3D G3DSA:2.20.70.70 54 224 2.3E-55 T 13-10-2018 AP3564_16705 e7c7baf36a48f9e70b697a2b58508939 718 Gene3D G3DSA:3.40.710.10 232 585 9.1E-101 T 13-10-2018 AP3564_16705 e7c7baf36a48f9e70b697a2b58508939 718 Pfam PF03793 PASTA domain 661 714 3.0E-8 T 13-10-2018 IPR005543 PASTA domain AP3564_16705 e7c7baf36a48f9e70b697a2b58508939 718 SUPERFAMILY SSF54184 661 715 7.06E-12 T 13-10-2018 AP3564_16705 e7c7baf36a48f9e70b697a2b58508939 718 Gene3D G3DSA:3.30.70.2110 78 160 2.3E-55 T 13-10-2018 AP3564_16705 e7c7baf36a48f9e70b697a2b58508939 718 SMART SM00740 599 659 0.029 T 13-10-2018 IPR005543 PASTA domain AP3564_16705 e7c7baf36a48f9e70b697a2b58508939 718 SMART SM00740 661 716 2.9E-4 T 13-10-2018 IPR005543 PASTA domain AP3564_16705 e7c7baf36a48f9e70b697a2b58508939 718 SUPERFAMILY SSF56601 190 588 4.05E-98 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AP3564_03385 bb364659cd2ffeb5320d739448649129 241 Pfam PF15428 Immunity protein 26 88 186 3.9E-16 T 13-10-2018 IPR029278 Immunity protein 26 AP3564_00135 bb364659cd2ffeb5320d739448649129 241 Pfam PF15428 Immunity protein 26 88 186 3.9E-16 T 13-10-2018 IPR029278 Immunity protein 26 AP3564_16015 d31958f40b6acddab61575823f2f0e03 158 Pfam PF17384 RimP C-terminal SH3 domain 87 156 8.9E-19 T 13-10-2018 IPR028998 Ribosome maturation factor RimP, C-terminal AP3564_16015 d31958f40b6acddab61575823f2f0e03 158 SUPERFAMILY SSF74942 85 156 4.18E-21 T 13-10-2018 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily AP3564_16015 d31958f40b6acddab61575823f2f0e03 158 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 7 156 24.579 T 13-10-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 AP3564_16015 d31958f40b6acddab61575823f2f0e03 158 SUPERFAMILY SSF75420 2 84 7.72E-27 T 13-10-2018 IPR035956 RimP, N-terminal domain superfamily AP3564_16015 d31958f40b6acddab61575823f2f0e03 158 Pfam PF02576 RimP N-terminal domain 13 84 1.6E-27 T 13-10-2018 IPR028989 Ribosome maturation factor RimP, N-terminal AP3564_16015 d31958f40b6acddab61575823f2f0e03 158 Gene3D G3DSA:2.30.30.180 88 154 9.4E-25 T 13-10-2018 AP3564_16015 d31958f40b6acddab61575823f2f0e03 158 Gene3D G3DSA:3.30.300.70 1 81 6.2E-30 T 13-10-2018 IPR035956 RimP, N-terminal domain superfamily AP3564_14900 10021956551c99089cf7486a809686e1 348 Gene3D G3DSA:3.30.565.10 211 343 9.7E-31 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_14900 10021956551c99089cf7486a809686e1 348 Pfam PF07730 Histidine kinase 145 211 2.8E-17 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AP3564_14900 10021956551c99089cf7486a809686e1 348 SUPERFAMILY SSF55874 222 339 1.44E-17 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_14900 10021956551c99089cf7486a809686e1 348 PIRSF PIRSF037431 2 347 5.8E-124 T 13-10-2018 IPR017202 Sensor histidine kinase LiaS/VraS GO:0000155|GO:0000160|GO:0004673|GO:0016021 AP3564_14900 10021956551c99089cf7486a809686e1 348 SMART SM00387 248 341 2.7E-8 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_14900 10021956551c99089cf7486a809686e1 348 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 249 339 1.1E-6 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_18465 e8bf1ebb6c199970aca7d55fcb026959 610 SUPERFAMILY SSF100920 354 510 4.45E-65 T 13-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 AP3564_18465 e8bf1ebb6c199970aca7d55fcb026959 610 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 307 321 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AP3564_18465 e8bf1ebb6c199970aca7d55fcb026959 610 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AP3564_18465 e8bf1ebb6c199970aca7d55fcb026959 610 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 166 179 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AP3564_18465 e8bf1ebb6c199970aca7d55fcb026959 610 SUPERFAMILY SSF53067 1 157 3.72E-59 T 13-10-2018 AP3564_18465 e8bf1ebb6c199970aca7d55fcb026959 610 Gene3D G3DSA:3.90.640.10 198 279 8.5E-158 T 13-10-2018 AP3564_18465 e8bf1ebb6c199970aca7d55fcb026959 610 PRINTS PR00301 70kDa heat shock protein signature 53 61 8.7E-81 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AP3564_18465 e8bf1ebb6c199970aca7d55fcb026959 610 PRINTS PR00301 70kDa heat shock protein signature 112 132 8.7E-81 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AP3564_18465 e8bf1ebb6c199970aca7d55fcb026959 610 PRINTS PR00301 70kDa heat shock protein signature 172 182 8.7E-81 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AP3564_18465 e8bf1ebb6c199970aca7d55fcb026959 610 PRINTS PR00301 70kDa heat shock protein signature 3 16 8.7E-81 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AP3564_18465 e8bf1ebb6c199970aca7d55fcb026959 610 PRINTS PR00301 70kDa heat shock protein signature 358 377 8.7E-81 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AP3564_18465 e8bf1ebb6c199970aca7d55fcb026959 610 PRINTS PR00301 70kDa heat shock protein signature 439 455 8.7E-81 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AP3564_18465 e8bf1ebb6c199970aca7d55fcb026959 610 PRINTS PR00301 70kDa heat shock protein signature 31 43 8.7E-81 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AP3564_18465 e8bf1ebb6c199970aca7d55fcb026959 610 PRINTS PR00301 70kDa heat shock protein signature 304 320 8.7E-81 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AP3564_18465 e8bf1ebb6c199970aca7d55fcb026959 610 PRINTS PR00301 70kDa heat shock protein signature 335 355 8.7E-81 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AP3564_18465 e8bf1ebb6c199970aca7d55fcb026959 610 Pfam PF00012 Hsp70 protein 76 573 3.7E-225 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AP3564_18465 e8bf1ebb6c199970aca7d55fcb026959 610 Gene3D G3DSA:3.30.420.40 5 347 8.5E-158 T 13-10-2018 AP3564_18465 e8bf1ebb6c199970aca7d55fcb026959 610 Gene3D G3DSA:1.20.1270.10 494 580 1.8E-17 T 13-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 AP3564_18465 e8bf1ebb6c199970aca7d55fcb026959 610 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 573 5.2E-292 T 13-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 AP3564_18465 e8bf1ebb6c199970aca7d55fcb026959 610 SUPERFAMILY SSF53067 160 351 2.79E-69 T 13-10-2018 AP3564_18465 e8bf1ebb6c199970aca7d55fcb026959 610 Gene3D G3DSA:3.30.420.40 159 337 8.5E-158 T 13-10-2018 AP3564_18465 e8bf1ebb6c199970aca7d55fcb026959 610 Gene3D G3DSA:2.60.34.10 353 493 1.9E-68 T 13-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 AP3564_18465 e8bf1ebb6c199970aca7d55fcb026959 610 SUPERFAMILY SSF100934 477 583 1.44E-15 T 13-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 AP3564_18465 e8bf1ebb6c199970aca7d55fcb026959 610 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 607 37.81 T 13-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 AP3564_17300 8efdf1f912b543506a9e698d9eebc9d0 311 Gene3D G3DSA:2.40.10.420 276 311 6.4E-22 T 13-10-2018 AP3564_17300 8efdf1f912b543506a9e698d9eebc9d0 311 Pfam PF01471 Putative peptidoglycan binding domain 37 94 2.8E-17 T 13-10-2018 IPR002477 Peptidoglycan binding-like AP3564_17300 8efdf1f912b543506a9e698d9eebc9d0 311 Gene3D G3DSA:1.10.10.2520 196 275 7.5E-32 T 13-10-2018 AP3564_17300 8efdf1f912b543506a9e698d9eebc9d0 311 TIGRFAM TIGR02869 spore_SleB: spore cortex-lytic enzyme 26 310 4.7E-96 T 13-10-2018 IPR014224 Spore cortex-lytic enzyme SleB GO:0003824|GO:0009847 AP3564_17300 8efdf1f912b543506a9e698d9eebc9d0 311 SUPERFAMILY SSF47090 28 96 5.1E-20 T 13-10-2018 IPR036365 PGBD-like superfamily AP3564_17300 8efdf1f912b543506a9e698d9eebc9d0 311 Pfam PF07486 Cell Wall Hydrolase 212 310 2.5E-27 T 13-10-2018 IPR011105 Cell wall hydrolase, SleB GO:0016787 AP3564_17300 8efdf1f912b543506a9e698d9eebc9d0 311 Gene3D G3DSA:1.10.101.10 22 104 1.7E-22 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 AP3564_00370 dddb0b5ba06f85ca8f2b23d106df7a6d 394 Gene3D G3DSA:2.30.40.10 11 386 4.1E-151 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AP3564_00370 dddb0b5ba06f85ca8f2b23d106df7a6d 394 SUPERFAMILY SSF51556 60 359 3.1E-98 T 13-10-2018 IPR032466 Metal-dependent hydrolase AP3564_00370 dddb0b5ba06f85ca8f2b23d106df7a6d 394 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 3 386 9.8E-128 T 13-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 AP3564_00370 dddb0b5ba06f85ca8f2b23d106df7a6d 394 SUPERFAMILY SSF51338 4 392 4.54E-18 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AP3564_00370 dddb0b5ba06f85ca8f2b23d106df7a6d 394 Pfam PF01979 Amidohydrolase family 57 387 5.7E-36 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AP3564_00370 dddb0b5ba06f85ca8f2b23d106df7a6d 394 Gene3D G3DSA:3.20.20.140 60 359 4.1E-151 T 13-10-2018 AP3564_00370 dddb0b5ba06f85ca8f2b23d106df7a6d 394 PIRSF PIRSF038994 2 392 6.8E-138 T 13-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 AP3564_17925 8fea1222f1af32232c9b1895677f35b5 150 SUPERFAMILY SSF52304 3 146 8.63E-58 T 13-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AP3564_17925 8fea1222f1af32232c9b1895677f35b5 150 ProSitePatterns PS01029 Dehydroquinase class II signature. 7 24 - T 13-10-2018 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AP3564_17925 8fea1222f1af32232c9b1895677f35b5 150 Gene3D G3DSA:3.40.50.9100 1 150 4.0E-63 T 13-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AP3564_17925 8fea1222f1af32232c9b1895677f35b5 150 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 4 140 3.0E-49 T 13-10-2018 AP3564_17925 8fea1222f1af32232c9b1895677f35b5 150 Pfam PF01220 Dehydroquinase class II 3 136 5.8E-60 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AP3564_17925 8fea1222f1af32232c9b1895677f35b5 150 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 150 63.351 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AP3564_17925 8fea1222f1af32232c9b1895677f35b5 150 PIRSF PIRSF001399 1 146 3.9E-61 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AP3564_17925 8fea1222f1af32232c9b1895677f35b5 150 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 3 140 8.6E-62 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AP3564_04215 fcfa64117820e06365cc819a7e85ad16 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 2.7E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_04215 fcfa64117820e06365cc819a7e85ad16 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 2.7E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_04215 fcfa64117820e06365cc819a7e85ad16 190 SUPERFAMILY SSF46689 3 77 3.75E-19 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_04215 fcfa64117820e06365cc819a7e85ad16 190 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 58 4.5E-16 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_04215 fcfa64117820e06365cc819a7e85ad16 190 Gene3D G3DSA:1.10.357.10 3 190 8.7E-31 T 13-10-2018 AP3564_02370 b626c90f417fe9c2ada43784bd8ff186 582 SMART SM00382 367 553 3.0E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_02370 b626c90f417fe9c2ada43784bd8ff186 582 ProSitePatterns PS00211 ABC transporters family signature. 479 493 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_02370 b626c90f417fe9c2ada43784bd8ff186 582 Gene3D G3DSA:3.40.50.300 331 580 1.2E-94 T 13-10-2018 AP3564_02370 b626c90f417fe9c2ada43784bd8ff186 582 Pfam PF00664 ABC transporter transmembrane region 19 293 9.1E-47 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AP3564_02370 b626c90f417fe9c2ada43784bd8ff186 582 SUPERFAMILY SSF52540 331 578 2.66E-98 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_02370 b626c90f417fe9c2ada43784bd8ff186 582 Gene3D G3DSA:1.20.1560.10 4 324 3.8E-113 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AP3564_02370 b626c90f417fe9c2ada43784bd8ff186 582 Pfam PF00005 ABC transporter 358 507 2.3E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_02370 b626c90f417fe9c2ada43784bd8ff186 582 SUPERFAMILY SSF90123 5 324 1.31E-80 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AP3564_11050 1037bf61a6582108cdbf277d1f4c1e02 156 Pfam PF07849 Protein of unknown function (DUF1641) 122 155 8.0E-13 T 13-10-2018 IPR012440 Protein of unknown function DUF1641 AP3564_19245 8fa26fbfb26fecb0a145a40fb6e8d587 162 Pfam PF08761 dUTPase 3 162 8.2E-52 T 13-10-2018 IPR014871 dUTPase/dCTP pyrophosphatase KEGG: 00240+3.6.1.12 AP3564_19245 8fa26fbfb26fecb0a145a40fb6e8d587 162 Gene3D G3DSA:1.10.4010.10 1 162 1.2E-14 T 13-10-2018 AP3564_19245 8fa26fbfb26fecb0a145a40fb6e8d587 162 SUPERFAMILY SSF101386 3 162 3.43E-43 T 13-10-2018 AP3564_19245 8fa26fbfb26fecb0a145a40fb6e8d587 162 PIRSF PIRSF030140 1 162 1.3E-55 T 13-10-2018 IPR016947 Uncharacterised phage-associated protein UCP030140 AP3564_08280 405e1a4550ecd4d0d0a03a9a4732a219 517 Gene3D G3DSA:3.30.300.310 411 514 3.2E-34 T 13-10-2018 AP3564_08280 405e1a4550ecd4d0d0a03a9a4732a219 517 ProSitePatterns PS00455 Putative AMP-binding domain signature. 167 178 - T 13-10-2018 IPR020845 AMP-binding, conserved site AP3564_08280 405e1a4550ecd4d0d0a03a9a4732a219 517 Gene3D G3DSA:3.40.50.12780 5 410 6.6E-123 T 13-10-2018 AP3564_08280 405e1a4550ecd4d0d0a03a9a4732a219 517 SUPERFAMILY SSF56801 4 511 1.44E-158 T 13-10-2018 AP3564_08280 405e1a4550ecd4d0d0a03a9a4732a219 517 Pfam PF13193 AMP-binding enzyme C-terminal domain 424 499 6.2E-22 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AP3564_08280 405e1a4550ecd4d0d0a03a9a4732a219 517 Pfam PF00501 AMP-binding enzyme 13 415 4.0E-114 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AP3564_09135 66395885c7cbd960085ce8ca5b173f95 380 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 171 196 - T 13-10-2018 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 AP3564_09135 66395885c7cbd960085ce8ca5b173f95 380 SUPERFAMILY SSF51735 135 302 9.58E-50 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_09135 66395885c7cbd960085ce8ca5b173f95 380 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 139 351 9.5E-86 T 13-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain AP3564_09135 66395885c7cbd960085ce8ca5b173f95 380 PIRSF PIRSF000183 1 370 2.9E-186 T 13-10-2018 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 AP3564_09135 66395885c7cbd960085ce8ca5b173f95 380 SUPERFAMILY SSF52283 1 359 1.62E-65 T 13-10-2018 AP3564_09135 66395885c7cbd960085ce8ca5b173f95 380 ProSitePatterns PS00836 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1. 4 30 - T 13-10-2018 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 GO:0016491|GO:0055114 Reactome: R-HSA-71403 AP3564_09135 66395885c7cbd960085ce8ca5b173f95 380 Gene3D G3DSA:3.40.50.720 128 304 3.0E-140 T 13-10-2018 AP3564_09135 66395885c7cbd960085ce8ca5b173f95 380 TIGRFAM TIGR00518 alaDH: alanine dehydrogenase 1 369 3.1E-178 T 13-10-2018 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 AP3564_09135 66395885c7cbd960085ce8ca5b173f95 380 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 135 1.9E-47 T 13-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal AP3564_09135 66395885c7cbd960085ce8ca5b173f95 380 SMART SM01002 147 296 2.5E-92 T 13-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain AP3564_09135 66395885c7cbd960085ce8ca5b173f95 380 Gene3D G3DSA:3.40.50.720 3 352 3.0E-140 T 13-10-2018 AP3564_09135 66395885c7cbd960085ce8ca5b173f95 380 SMART SM01003 4 135 6.2E-74 T 13-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal AP3564_11265 14b1d809fada0236aa20104318a97888 211 Gene3D G3DSA:1.20.1260.10 1 210 1.4E-28 T 13-10-2018 IPR012347 Ferritin-like AP3564_11265 14b1d809fada0236aa20104318a97888 211 SUPERFAMILY SSF47240 7 199 2.31E-26 T 13-10-2018 IPR009078 Ferritin-like superfamily AP3564_11265 14b1d809fada0236aa20104318a97888 211 Pfam PF05138 Phenylacetic acid catabolic protein 4 203 1.2E-19 T 13-10-2018 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C GO:0010124 AP3564_04650 70d68fd3c1ff6b6feaf020522e77d143 499 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 262 450 1.3E-58 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AP3564_04650 70d68fd3c1ff6b6feaf020522e77d143 499 Gene3D G3DSA:3.30.420.40 254 499 1.6E-90 T 13-10-2018 AP3564_04650 70d68fd3c1ff6b6feaf020522e77d143 499 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 135 147 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AP3564_04650 70d68fd3c1ff6b6feaf020522e77d143 499 SUPERFAMILY SSF53067 255 496 4.14E-82 T 13-10-2018 AP3564_04650 70d68fd3c1ff6b6feaf020522e77d143 499 Gene3D G3DSA:3.30.420.40 1 253 2.8E-94 T 13-10-2018 AP3564_04650 70d68fd3c1ff6b6feaf020522e77d143 499 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 6 252 1.9E-70 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AP3564_04650 70d68fd3c1ff6b6feaf020522e77d143 499 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 6 496 8.1E-201 T 13-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 AP3564_04650 70d68fd3c1ff6b6feaf020522e77d143 499 Hamap MF_00186 Glycerol kinase [glpK]. 4 497 53.68 T 13-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 AP3564_04650 70d68fd3c1ff6b6feaf020522e77d143 499 PIRSF PIRSF000538 4 499 5.2E-162 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AP3564_04650 70d68fd3c1ff6b6feaf020522e77d143 499 SUPERFAMILY SSF53067 5 255 5.3E-84 T 13-10-2018 AP3564_04650 70d68fd3c1ff6b6feaf020522e77d143 499 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 362 382 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AP3564_08580 1b404789146eb18d030d160e5587e54c 476 SMART SM00028 285 318 380.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AP3564_08580 1b404789146eb18d030d160e5587e54c 476 SMART SM00028 182 215 1.4E-4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AP3564_08580 1b404789146eb18d030d160e5587e54c 476 SMART SM00028 21 54 0.63 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AP3564_08580 1b404789146eb18d030d160e5587e54c 476 SMART SM00028 90 123 440.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AP3564_08580 1b404789146eb18d030d160e5587e54c 476 Gene3D G3DSA:1.25.40.10 134 374 6.4E-20 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AP3564_08580 1b404789146eb18d030d160e5587e54c 476 Gene3D G3DSA:1.25.40.10 11 133 1.7E-14 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AP3564_08580 1b404789146eb18d030d160e5587e54c 476 SUPERFAMILY SSF48452 17 317 3.54E-20 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AP3564_08580 1b404789146eb18d030d160e5587e54c 476 Pfam PF14559 Tetratricopeptide repeat 158 217 1.7E-7 T 13-10-2018 AP3564_04325 098c11029842f6136b7d54bf73c19e1d 175 SMART SM00867 3 173 6.9E-63 T 13-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like AP3564_04325 098c11029842f6136b7d54bf73c19e1d 175 Pfam PF04264 YceI-like domain 4 167 9.1E-43 T 13-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like AP3564_04325 098c11029842f6136b7d54bf73c19e1d 175 Gene3D G3DSA:2.40.128.110 2 174 1.7E-48 T 13-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily AP3564_04325 098c11029842f6136b7d54bf73c19e1d 175 SUPERFAMILY SSF101874 2 173 1.44E-51 T 13-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily AP3564_00655 badffbfab0b6746e54d2120ac2d2102e 258 SMART SM00382 31 231 5.3E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_00655 badffbfab0b6746e54d2120ac2d2102e 258 Pfam PF00005 ABC transporter 23 183 2.4E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_00655 badffbfab0b6746e54d2120ac2d2102e 258 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 231 253 2.1E-12 T 13-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AP3564_00655 badffbfab0b6746e54d2120ac2d2102e 258 SUPERFAMILY SSF52540 5 254 1.74E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_00655 badffbfab0b6746e54d2120ac2d2102e 258 Gene3D G3DSA:3.40.50.300 2 254 1.6E-67 T 13-10-2018 AP3564_01645 36b0680dd51425c20a783a74aff5e5e2 353 Gene3D G3DSA:3.40.50.10470 153 352 1.2E-66 T 13-10-2018 AP3564_01645 36b0680dd51425c20a783a74aff5e5e2 353 Hamap MF_01678 Putative methylthioribose-1-phosphate isomerase [mtnA]. 6 351 38.273 T 13-10-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 AP3564_01645 36b0680dd51425c20a783a74aff5e5e2 353 Gene3D G3DSA:1.20.120.420 3 151 1.2E-47 T 13-10-2018 IPR027363 Methylthioribose-1-phosphate isomerase, N-terminal KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 AP3564_01645 36b0680dd51425c20a783a74aff5e5e2 353 SUPERFAMILY SSF100950 10 344 1.34E-118 T 13-10-2018 IPR037171 NagB/RpiA transferase-like AP3564_01645 36b0680dd51425c20a783a74aff5e5e2 353 TIGRFAM TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 15 339 9.0E-130 T 13-10-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 AP3564_01645 36b0680dd51425c20a783a74aff5e5e2 353 Pfam PF01008 Initiation factor 2 subunit family 50 341 1.2E-79 T 13-10-2018 IPR000649 Initiation factor 2B-related GO:0044237 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174 AP3564_01645 36b0680dd51425c20a783a74aff5e5e2 353 TIGRFAM TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 38 340 6.4E-110 T 13-10-2018 IPR011559 Initiation factor 2B alpha/beta/delta GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 AP3564_19035 41d41e3c8f6dbce66767bdeb8b62b6a7 421 SMART SM00382 108 259 3.9E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_19035 41d41e3c8f6dbce66767bdeb8b62b6a7 421 SUPERFAMILY SSF52540 59 399 5.78E-81 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_19035 41d41e3c8f6dbce66767bdeb8b62b6a7 421 SMART SM00994 10 49 8.0E-24 T 13-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 AP3564_19035 41d41e3c8f6dbce66767bdeb8b62b6a7 421 SUPERFAMILY SSF57716 11 46 1.71E-11 T 13-10-2018 AP3564_19035 41d41e3c8f6dbce66767bdeb8b62b6a7 421 Pfam PF07724 AAA domain (Cdc48 subfamily) 109 305 9.4E-52 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AP3564_19035 41d41e3c8f6dbce66767bdeb8b62b6a7 421 SMART SM01086 311 401 1.5E-34 T 13-10-2018 IPR019489 Clp ATPase, C-terminal AP3564_19035 41d41e3c8f6dbce66767bdeb8b62b6a7 421 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 2 409 53.988 T 13-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 AP3564_19035 41d41e3c8f6dbce66767bdeb8b62b6a7 421 Gene3D G3DSA:1.10.8.60 310 417 1.1E-38 T 13-10-2018 AP3564_19035 41d41e3c8f6dbce66767bdeb8b62b6a7 421 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 311 389 1.3E-18 T 13-10-2018 IPR019489 Clp ATPase, C-terminal AP3564_19035 41d41e3c8f6dbce66767bdeb8b62b6a7 421 Gene3D G3DSA:3.30.50.30 3 50 8.4E-22 T 13-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily AP3564_19035 41d41e3c8f6dbce66767bdeb8b62b6a7 421 Pfam PF06689 ClpX C4-type zinc finger 12 48 2.6E-20 T 13-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 AP3564_19035 41d41e3c8f6dbce66767bdeb8b62b6a7 421 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 2 406 5.9E-216 T 13-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 AP3564_19035 41d41e3c8f6dbce66767bdeb8b62b6a7 421 Gene3D G3DSA:3.40.50.300 54 309 1.0E-109 T 13-10-2018 AP3564_18300 463fdbe4d21c27b261e285fe82d858ba 236 Gene3D G3DSA:3.40.50.150 1 164 8.0E-56 T 13-10-2018 AP3564_18300 463fdbe4d21c27b261e285fe82d858ba 236 Pfam PF04816 tRNA (adenine(22)-N(1))-methyltransferase 24 232 3.9E-74 T 13-10-2018 IPR006901 tRNA methyltransferase TrmK GO:0016429 AP3564_18300 463fdbe4d21c27b261e285fe82d858ba 236 SUPERFAMILY SSF53335 12 141 2.75E-8 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_18300 463fdbe4d21c27b261e285fe82d858ba 236 PIRSF PIRSF018637 4 236 3.1E-83 T 13-10-2018 IPR006901 tRNA methyltransferase TrmK GO:0016429 AP3564_19275 2247b3675e83acd88c6d64a923beeccd 267 PIRSF PIRSF036940 1 267 3.1E-81 T 13-10-2018 IPR011602 Type II pantothenate kinase, bacterial GO:0004594|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 AP3564_19275 2247b3675e83acd88c6d64a923beeccd 267 Gene3D G3DSA:3.30.420.40 73 252 4.4E-91 T 13-10-2018 AP3564_19275 2247b3675e83acd88c6d64a923beeccd 267 Gene3D G3DSA:3.30.420.40 4 264 4.4E-91 T 13-10-2018 AP3564_19275 2247b3675e83acd88c6d64a923beeccd 267 Pfam PF03630 Fumble 51 265 8.0E-30 T 13-10-2018 IPR004567 Type II pantothenate kinase GO:0004594|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|Reactome: R-HSA-196783 AP3564_19275 2247b3675e83acd88c6d64a923beeccd 267 SUPERFAMILY SSF53067 3 266 5.83E-44 T 13-10-2018 AP3564_08310 4240e93e7ae212b3ab4b3d47a227f9a9 422 Pfam PF00501 AMP-binding enzyme 89 284 1.9E-8 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AP3564_08310 4240e93e7ae212b3ab4b3d47a227f9a9 422 Pfam PF14535 AMP-binding enzyme C-terminal domain 334 419 4.3E-17 T 13-10-2018 IPR028154 AMP-dependent ligase, C-terminal AP3564_08310 4240e93e7ae212b3ab4b3d47a227f9a9 422 SUPERFAMILY SSF56801 33 377 1.7E-43 T 13-10-2018 AP3564_08310 4240e93e7ae212b3ab4b3d47a227f9a9 422 Gene3D G3DSA:3.40.50.12780 3 325 1.0E-93 T 13-10-2018 AP3564_08310 4240e93e7ae212b3ab4b3d47a227f9a9 422 Gene3D G3DSA:3.30.300.30 326 421 1.0E-25 T 13-10-2018 AP3564_10310 40297dcf452f40ccd17c7f51b815a331 172 Pfam PF13563 2'-5' RNA ligase superfamily 11 153 2.5E-26 T 13-10-2018 AP3564_10310 40297dcf452f40ccd17c7f51b815a331 172 Gene3D G3DSA:3.90.1140.10 1 171 1.5E-47 T 13-10-2018 AP3564_10310 40297dcf452f40ccd17c7f51b815a331 172 SUPERFAMILY SSF55144 1 170 5.41E-37 T 13-10-2018 IPR009097 Cyclic phosphodiesterase AP3564_10310 40297dcf452f40ccd17c7f51b815a331 172 Hamap MF_01444 Putative phosphoesterase . 1 168 41.695 T 13-10-2018 IPR022932 Putative phosphoesterase YjcG AP3564_09650 ae08fbece5d1ee23e63c1f2f87c2866a 457 SUPERFAMILY SSF53098 301 422 6.22E-6 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_09650 ae08fbece5d1ee23e63c1f2f87c2866a 457 Pfam PF13701 Transposase DDE domain group 1 13 452 2.6E-33 T 13-10-2018 IPR025668 Transposase DDE domain AP3564_07030 ae08fbece5d1ee23e63c1f2f87c2866a 457 SUPERFAMILY SSF53098 301 422 6.22E-6 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_07030 ae08fbece5d1ee23e63c1f2f87c2866a 457 Pfam PF13701 Transposase DDE domain group 1 13 452 2.6E-33 T 13-10-2018 IPR025668 Transposase DDE domain AP3564_02220 ae08fbece5d1ee23e63c1f2f87c2866a 457 SUPERFAMILY SSF53098 301 422 6.22E-6 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_02220 ae08fbece5d1ee23e63c1f2f87c2866a 457 Pfam PF13701 Transposase DDE domain group 1 13 452 2.6E-33 T 13-10-2018 IPR025668 Transposase DDE domain AP3564_04670 ae08fbece5d1ee23e63c1f2f87c2866a 457 SUPERFAMILY SSF53098 301 422 6.22E-6 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_04670 ae08fbece5d1ee23e63c1f2f87c2866a 457 Pfam PF13701 Transposase DDE domain group 1 13 452 2.6E-33 T 13-10-2018 IPR025668 Transposase DDE domain AP3564_12145 ae08fbece5d1ee23e63c1f2f87c2866a 457 SUPERFAMILY SSF53098 301 422 6.22E-6 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_12145 ae08fbece5d1ee23e63c1f2f87c2866a 457 Pfam PF13701 Transposase DDE domain group 1 13 452 2.6E-33 T 13-10-2018 IPR025668 Transposase DDE domain AP3564_11145 ae08fbece5d1ee23e63c1f2f87c2866a 457 SUPERFAMILY SSF53098 301 422 6.22E-6 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_11145 ae08fbece5d1ee23e63c1f2f87c2866a 457 Pfam PF13701 Transposase DDE domain group 1 13 452 2.6E-33 T 13-10-2018 IPR025668 Transposase DDE domain AP3564_19585 ae08fbece5d1ee23e63c1f2f87c2866a 457 SUPERFAMILY SSF53098 301 422 6.22E-6 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_19585 ae08fbece5d1ee23e63c1f2f87c2866a 457 Pfam PF13701 Transposase DDE domain group 1 13 452 2.6E-33 T 13-10-2018 IPR025668 Transposase DDE domain AP3564_13755 ae08fbece5d1ee23e63c1f2f87c2866a 457 SUPERFAMILY SSF53098 301 422 6.22E-6 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_13755 ae08fbece5d1ee23e63c1f2f87c2866a 457 Pfam PF13701 Transposase DDE domain group 1 13 452 2.6E-33 T 13-10-2018 IPR025668 Transposase DDE domain AP3564_11085 ae08fbece5d1ee23e63c1f2f87c2866a 457 SUPERFAMILY SSF53098 301 422 6.22E-6 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_11085 ae08fbece5d1ee23e63c1f2f87c2866a 457 Pfam PF13701 Transposase DDE domain group 1 13 452 2.6E-33 T 13-10-2018 IPR025668 Transposase DDE domain AP3564_08090 ae08fbece5d1ee23e63c1f2f87c2866a 457 SUPERFAMILY SSF53098 301 422 6.22E-6 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_08090 ae08fbece5d1ee23e63c1f2f87c2866a 457 Pfam PF13701 Transposase DDE domain group 1 13 452 2.6E-33 T 13-10-2018 IPR025668 Transposase DDE domain AP3564_10170 715a52d38f165d1e6faf829d7823c7d1 168 Pfam PF01464 Transglycosylase SLT domain 50 158 6.5E-34 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 AP3564_10170 715a52d38f165d1e6faf829d7823c7d1 168 Gene3D G3DSA:1.10.530.10 5 168 9.0E-55 T 13-10-2018 AP3564_10170 715a52d38f165d1e6faf829d7823c7d1 168 SUPERFAMILY SSF53955 43 166 9.6E-50 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily AP3564_16295 0f2ace53bc93185cae5bc0ff0c14fe0f 183 ProSitePatterns PS00501 Signal peptidases I serine active site. 37 44 - T 13-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 AP3564_16295 0f2ace53bc93185cae5bc0ff0c14fe0f 183 Gene3D G3DSA:2.10.109.10 58 182 3.2E-46 T 13-10-2018 AP3564_16295 0f2ace53bc93185cae5bc0ff0c14fe0f 183 ProSitePatterns PS00761 Signal peptidases I signature 3. 141 154 - T 13-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 AP3564_16295 0f2ace53bc93185cae5bc0ff0c14fe0f 183 SUPERFAMILY SSF51306 26 182 1.57E-54 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily AP3564_16295 0f2ace53bc93185cae5bc0ff0c14fe0f 183 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 78 90 3.1E-21 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AP3564_16295 0f2ace53bc93185cae5bc0ff0c14fe0f 183 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 28 44 3.1E-21 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AP3564_16295 0f2ace53bc93185cae5bc0ff0c14fe0f 183 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 136 155 3.1E-21 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AP3564_16295 0f2ace53bc93185cae5bc0ff0c14fe0f 183 ProSitePatterns PS00760 Signal peptidases I lysine active site. 80 92 - T 13-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 AP3564_16295 0f2ace53bc93185cae5bc0ff0c14fe0f 183 Pfam PF00717 Peptidase S24-like 35 102 3.2E-21 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AP3564_16295 0f2ace53bc93185cae5bc0ff0c14fe0f 183 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 11 176 9.2E-56 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AP3564_01640 76816acf7dbbb6aa5bfa5da042bcb688 416 Gene3D G3DSA:3.90.1200.10 109 396 4.7E-100 T 13-10-2018 AP3564_01640 76816acf7dbbb6aa5bfa5da042bcb688 416 Gene3D G3DSA:3.30.200.20 1 108 8.2E-39 T 13-10-2018 AP3564_01640 76816acf7dbbb6aa5bfa5da042bcb688 416 SUPERFAMILY SSF56112 1 390 4.89E-82 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily AP3564_01640 76816acf7dbbb6aa5bfa5da042bcb688 416 Pfam PF01636 Phosphotransferase enzyme family 25 259 4.1E-10 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase AP3564_01640 76816acf7dbbb6aa5bfa5da042bcb688 416 PIRSF PIRSF031134 1 395 1.7E-154 T 13-10-2018 IPR009212 Methylthioribose kinase GO:0009086|GO:0046522 KEGG: 00270+2.7.1.100|MetaCyc: PWY-6754 AP3564_01640 76816acf7dbbb6aa5bfa5da042bcb688 416 Hamap MF_01683 Methylthioribose kinase [mtnK]. 1 404 169.58 T 13-10-2018 IPR009212 Methylthioribose kinase GO:0009086|GO:0046522 KEGG: 00270+2.7.1.100|MetaCyc: PWY-6754 AP3564_01640 76816acf7dbbb6aa5bfa5da042bcb688 416 TIGRFAM TIGR01767 MTRK: S-methyl-5-thioribose kinase 26 394 2.7E-105 T 13-10-2018 IPR009212 Methylthioribose kinase GO:0009086|GO:0046522 KEGG: 00270+2.7.1.100|MetaCyc: PWY-6754 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 SUPERFAMILY SSF81665 262 487 1.57E-11 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 SUPERFAMILY SSF56784 495 791 1.21E-61 T 13-10-2018 IPR036412 HAD-like superfamily AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 616 627 1.4E-26 T 13-10-2018 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 344 358 1.4E-26 T 13-10-2018 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 714 726 1.4E-26 T 13-10-2018 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 691 710 1.4E-26 T 13-10-2018 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 496 510 1.4E-26 T 13-10-2018 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 638 648 1.4E-26 T 13-10-2018 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 PRINTS PR00943 Copper-transporting ATPase signature 212 231 3.9E-17 T 13-10-2018 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 PRINTS PR00943 Copper-transporting ATPase signature 284 302 3.9E-17 T 13-10-2018 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 PRINTS PR00943 Copper-transporting ATPase signature 668 685 3.9E-17 T 13-10-2018 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 PRINTS PR00943 Copper-transporting ATPase signature 117 137 3.9E-17 T 13-10-2018 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 PRINTS PR00943 Copper-transporting ATPase signature 417 431 3.9E-17 T 13-10-2018 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 PRINTS PR00943 Copper-transporting ATPase signature 479 494 3.9E-17 T 13-10-2018 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 PRINTS PR00943 Copper-transporting ATPase signature 264 283 3.9E-17 T 13-10-2018 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 Pfam PF00122 E1-E2 ATPase 295 475 6.6E-55 T 13-10-2018 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 SUPERFAMILY SSF55008 72 141 2.09E-21 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 Gene3D G3DSA:3.30.70.100 72 159 2.8E-22 T 13-10-2018 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 227 793 6.7E-203 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 267 770 4.2E-97 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 209 794 5.8E-192 T 13-10-2018 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 Gene3D G3DSA:3.30.70.100 5 71 8.7E-20 T 13-10-2018 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 Gene3D G3DSA:3.40.1110.10 507 623 3.4E-95 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 Pfam PF00403 Heavy-metal-associated domain 75 136 7.6E-18 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 Pfam PF00403 Heavy-metal-associated domain 8 67 7.9E-15 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 7 70 5.2E-9 T 13-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 73 136 9.2E-12 T 13-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 ProSitePatterns PS01047 Heavy-metal-associated domain. 11 39 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 SUPERFAMILY SSF55008 4 70 6.81E-19 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 SUPERFAMILY SSF81653 299 394 4.45E-30 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 Gene3D G3DSA:2.70.150.20 287 399 7.7E-43 T 13-10-2018 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 498 504 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 Gene3D G3DSA:3.40.50.1000 477 743 3.4E-95 T 13-10-2018 IPR023214 HAD superfamily AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 ProSitePatterns PS01047 Heavy-metal-associated domain. 78 107 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 Pfam PF00702 haloacid dehalogenase-like hydrolase 492 705 4.2E-47 T 13-10-2018 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 PRINTS PR00942 Copper-transporting ATPase 1 signature 210 235 5.9E-11 T 13-10-2018 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 PRINTS PR00942 Copper-transporting ATPase 1 signature 6 31 5.9E-11 T 13-10-2018 AP3564_13325 74fed3ef5ee3de4e7e2732593e91cdba 798 PRINTS PR00942 Copper-transporting ATPase 1 signature 190 210 5.9E-11 T 13-10-2018 AP3564_16275 d5c1c8de742ff2821a3da27545676dc1 89 Gene3D G3DSA:3.40.1690.10 8 88 4.3E-28 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal AP3564_16275 d5c1c8de742ff2821a3da27545676dc1 89 SUPERFAMILY SSF160544 9 86 7.19E-26 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal AP3564_16275 d5c1c8de742ff2821a3da27545676dc1 89 Pfam PF01312 FlhB HrpN YscU SpaS Family 10 82 6.0E-22 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AP3564_08990 9ab23f02c5f86be8ec0fd82a1f7f3852 296 Pfam PF01904 Protein of unknown function DUF72 16 264 1.5E-61 T 13-10-2018 IPR002763 Protein of unknown function DUF72 AP3564_08990 9ab23f02c5f86be8ec0fd82a1f7f3852 296 SUPERFAMILY SSF117396 1 268 1.31E-85 T 13-10-2018 IPR036520 UPF0759 superfamily AP3564_08990 9ab23f02c5f86be8ec0fd82a1f7f3852 296 Gene3D G3DSA:3.20.20.410 1 281 4.9E-98 T 13-10-2018 IPR036520 UPF0759 superfamily AP3564_04410 7feeb0bdfc1c088b939758b77ea21908 640 SUPERFAMILY SSF52317 43 332 6.87E-13 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AP3564_04410 7feeb0bdfc1c088b939758b77ea21908 640 Gene3D G3DSA:3.40.50.880 46 242 6.4E-6 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AP3564_10200 063e0efffb31b4a019a34533a908bdd0 454 SUPERFAMILY SSF161093 280 450 4.97E-51 T 13-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 AP3564_10200 063e0efffb31b4a019a34533a908bdd0 454 SUPERFAMILY SSF158791 8 134 5.23E-28 T 13-10-2018 AP3564_10200 063e0efffb31b4a019a34533a908bdd0 454 Pfam PF03448 MgtE intracellular N domain 33 134 3.0E-21 T 13-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain AP3564_10200 063e0efffb31b4a019a34533a908bdd0 454 SMART SM00116 145 198 3.5E-4 T 13-10-2018 IPR000644 CBS domain AP3564_10200 063e0efffb31b4a019a34533a908bdd0 454 SMART SM00116 209 257 1.0E-10 T 13-10-2018 IPR000644 CBS domain AP3564_10200 063e0efffb31b4a019a34533a908bdd0 454 Gene3D G3DSA:3.10.580.10 134 262 1.6E-49 T 13-10-2018 AP3564_10200 063e0efffb31b4a019a34533a908bdd0 454 Pfam PF00571 CBS domain 138 194 1.1E-8 T 13-10-2018 IPR000644 CBS domain AP3564_10200 063e0efffb31b4a019a34533a908bdd0 454 Pfam PF00571 CBS domain 203 257 2.5E-10 T 13-10-2018 IPR000644 CBS domain AP3564_10200 063e0efffb31b4a019a34533a908bdd0 454 SMART SM00924 33 138 6.2E-21 T 13-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain AP3564_10200 063e0efffb31b4a019a34533a908bdd0 454 Pfam PF01769 Divalent cation transporter 322 443 2.2E-30 T 13-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 AP3564_10200 063e0efffb31b4a019a34533a908bdd0 454 Gene3D G3DSA:1.25.60.10 1 133 2.6E-38 T 13-10-2018 IPR038076 MgtE, N-terminal domain superfamily AP3564_10200 063e0efffb31b4a019a34533a908bdd0 454 Gene3D G3DSA:1.10.357.20 276 451 8.7E-59 T 13-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain AP3564_10200 063e0efffb31b4a019a34533a908bdd0 454 TIGRFAM TIGR00400 mgtE: magnesium transporter 17 451 2.8E-132 T 13-10-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 AP3564_10200 063e0efffb31b4a019a34533a908bdd0 454 SUPERFAMILY SSF54631 137 274 4.04E-36 T 13-10-2018 AP3564_18960 e2757532f579901e0b090b56293d5b3a 880 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 814 879 5.2E-24 T 13-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 AP3564_18960 e2757532f579901e0b090b56293d5b3a 880 SUPERFAMILY SSF52374 6 575 1.13E-146 T 13-10-2018 AP3564_18960 e2757532f579901e0b090b56293d5b3a 880 SUPERFAMILY SSF46589 814 878 3.98E-16 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 AP3564_18960 e2757532f579901e0b090b56293d5b3a 880 Gene3D G3DSA:3.40.50.620 28 526 0.0 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AP3564_18960 e2757532f579901e0b090b56293d5b3a 880 Gene3D G3DSA:3.90.740.10 181 347 0.0 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AP3564_18960 e2757532f579901e0b090b56293d5b3a 880 Gene3D G3DSA:1.10.287.380 807 879 1.2E-24 T 13-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 AP3564_18960 e2757532f579901e0b090b56293d5b3a 880 Gene3D G3DSA:1.10.730.10 9 742 0.0 T 13-10-2018 AP3564_18960 e2757532f579901e0b090b56293d5b3a 880 SUPERFAMILY SSF50677 196 347 1.31E-66 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AP3564_18960 e2757532f579901e0b090b56293d5b3a 880 PRINTS PR00986 Valyl-tRNA synthetase signature 477 495 2.5E-40 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AP3564_18960 e2757532f579901e0b090b56293d5b3a 880 PRINTS PR00986 Valyl-tRNA synthetase signature 351 364 2.5E-40 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AP3564_18960 e2757532f579901e0b090b56293d5b3a 880 PRINTS PR00986 Valyl-tRNA synthetase signature 42 53 2.5E-40 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AP3564_18960 e2757532f579901e0b090b56293d5b3a 880 PRINTS PR00986 Valyl-tRNA synthetase signature 236 253 2.5E-40 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AP3564_18960 e2757532f579901e0b090b56293d5b3a 880 PRINTS PR00986 Valyl-tRNA synthetase signature 445 466 2.5E-40 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AP3564_18960 e2757532f579901e0b090b56293d5b3a 880 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 21 565 1.1E-227 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_18960 e2757532f579901e0b090b56293d5b3a 880 Hamap MF_02004 Valine--tRNA ligase [valS]. 8 879 16.455 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AP3564_18960 e2757532f579901e0b090b56293d5b3a 880 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 49 60 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_18960 e2757532f579901e0b090b56293d5b3a 880 SUPERFAMILY SSF47323 577 829 1.63E-80 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_18960 e2757532f579901e0b090b56293d5b3a 880 Pfam PF08264 Anticodon-binding domain of tRNA 608 755 1.4E-44 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 AP3564_18960 e2757532f579901e0b090b56293d5b3a 880 TIGRFAM TIGR00422 valS: valine--tRNA ligase 10 861 0.0 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AP3564_08125 93556a8d4b6e8a61ffc9dd248eb22f97 393 SUPERFAMILY SSF53901 272 392 3.36E-37 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AP3564_08125 93556a8d4b6e8a61ffc9dd248eb22f97 393 Gene3D G3DSA:3.40.47.10 126 390 1.4E-145 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AP3564_08125 93556a8d4b6e8a61ffc9dd248eb22f97 393 ProSitePatterns PS00099 Thiolases active site. 374 387 - T 13-10-2018 IPR020610 Thiolase, active site GO:0016747 AP3564_08125 93556a8d4b6e8a61ffc9dd248eb22f97 393 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 84 102 - T 13-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 AP3564_08125 93556a8d4b6e8a61ffc9dd248eb22f97 393 SUPERFAMILY SSF53901 4 269 3.51E-82 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AP3564_08125 93556a8d4b6e8a61ffc9dd248eb22f97 393 PIRSF PIRSF000429 1 393 2.1E-116 T 13-10-2018 IPR002155 Thiolase GO:0016747 AP3564_08125 93556a8d4b6e8a61ffc9dd248eb22f97 393 Pfam PF02803 Thiolase, C-terminal domain 272 391 7.7E-44 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 AP3564_08125 93556a8d4b6e8a61ffc9dd248eb22f97 393 Gene3D G3DSA:3.40.47.10 5 276 1.4E-145 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AP3564_08125 93556a8d4b6e8a61ffc9dd248eb22f97 393 Pfam PF00108 Thiolase, N-terminal domain 5 262 2.1E-97 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 AP3564_08125 93556a8d4b6e8a61ffc9dd248eb22f97 393 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 391 1.5E-140 T 13-10-2018 IPR002155 Thiolase GO:0016747 AP3564_08125 93556a8d4b6e8a61ffc9dd248eb22f97 393 ProSitePatterns PS00737 Thiolases signature 2. 339 355 - T 13-10-2018 IPR020613 Thiolase, conserved site GO:0016747 AP3564_13975 b8e483966e21ef51d9ccc076dcbd68f5 75 Gene3D G3DSA:3.30.110.40 1 75 4.2E-31 T 13-10-2018 IPR036868 TusA-like domain superfamily AP3564_13975 b8e483966e21ef51d9ccc076dcbd68f5 75 Pfam PF01206 Sulfurtransferase TusA 5 74 2.0E-26 T 13-10-2018 IPR001455 TusA-like domain AP3564_13975 b8e483966e21ef51d9ccc076dcbd68f5 75 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 7 31 - T 13-10-2018 IPR001455 TusA-like domain AP3564_13975 b8e483966e21ef51d9ccc076dcbd68f5 75 SUPERFAMILY SSF64307 4 75 5.76E-26 T 13-10-2018 IPR036868 TusA-like domain superfamily AP3564_18690 d18313a599e9d077093d766e55945890 425 SUPERFAMILY SSF52540 2 232 1.35E-43 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_18690 d18313a599e9d077093d766e55945890 425 Gene3D G3DSA:1.10.8.60 149 223 4.6E-19 T 13-10-2018 AP3564_18690 d18313a599e9d077093d766e55945890 425 Gene3D G3DSA:1.10.3710.10 329 425 6.4E-26 T 13-10-2018 AP3564_18690 d18313a599e9d077093d766e55945890 425 Pfam PF16193 AAA C-terminal domain 172 250 6.8E-26 T 13-10-2018 IPR032423 AAA C-terminal domain AP3564_18690 d18313a599e9d077093d766e55945890 425 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 6 126 4.8E-15 T 13-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 AP3564_18690 d18313a599e9d077093d766e55945890 425 SMART SM00382 37 149 2.2E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_18690 d18313a599e9d077093d766e55945890 425 Gene3D G3DSA:1.20.272.10 225 328 3.0E-43 T 13-10-2018 AP3564_18690 d18313a599e9d077093d766e55945890 425 Pfam PF12002 MgsA AAA+ ATPase C terminal 251 416 1.3E-68 T 13-10-2018 IPR021886 MgsA AAA+ ATPase C-terminal AP3564_18690 d18313a599e9d077093d766e55945890 425 Gene3D G3DSA:3.40.50.300 1 147 1.5E-40 T 13-10-2018 AP3564_18690 d18313a599e9d077093d766e55945890 425 SUPERFAMILY SSF48019 236 420 1.47E-74 T 13-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 AP3564_16955 0ed45832dda237ca372f297576f4a455 198 SUPERFAMILY SSF52980 32 197 2.47E-69 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AP3564_16955 0ed45832dda237ca372f297576f4a455 198 PIRSF PIRSF037785 22 198 8.5E-77 T 13-10-2018 IPR004612 Holliday junction resolvase RecU GO:0005737|GO:0006281|GO:0006310 AP3564_16955 0ed45832dda237ca372f297576f4a455 198 Gene3D G3DSA:3.40.1350.10 33 198 3.9E-69 T 13-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 AP3564_16955 0ed45832dda237ca372f297576f4a455 198 Pfam PF03838 Recombination protein U 30 194 1.4E-69 T 13-10-2018 IPR004612 Holliday junction resolvase RecU GO:0005737|GO:0006281|GO:0006310 AP3564_16955 0ed45832dda237ca372f297576f4a455 198 TIGRFAM TIGR00648 recU: recombination protein U 29 196 2.5E-81 T 13-10-2018 IPR004612 Holliday junction resolvase RecU GO:0005737|GO:0006281|GO:0006310 AP3564_16955 0ed45832dda237ca372f297576f4a455 198 Hamap MF_00130 Holliday junction resolvase RecU [recU]. 1 198 94.922 T 13-10-2018 IPR004612 Holliday junction resolvase RecU GO:0005737|GO:0006281|GO:0006310 AP3564_09245 80e3858e5a7402fd85f1f73640dbd96e 806 TIGRFAM TIGR00940 2a6301s01: monovalent cation:proton antiporter 4 796 0.0 T 13-10-2018 IPR005663 Monovalent cation proton antiporter subunit A GO:0015077|GO:0030004 AP3564_09245 80e3858e5a7402fd85f1f73640dbd96e 806 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 241 267 8.7E-45 T 13-10-2018 AP3564_09245 80e3858e5a7402fd85f1f73640dbd96e 806 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 106 126 8.7E-45 T 13-10-2018 AP3564_09245 80e3858e5a7402fd85f1f73640dbd96e 806 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 219 240 8.7E-45 T 13-10-2018 AP3564_09245 80e3858e5a7402fd85f1f73640dbd96e 806 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 77 102 8.7E-45 T 13-10-2018 AP3564_09245 80e3858e5a7402fd85f1f73640dbd96e 806 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 309 321 8.7E-45 T 13-10-2018 AP3564_09245 80e3858e5a7402fd85f1f73640dbd96e 806 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 434 453 8.7E-45 T 13-10-2018 AP3564_09245 80e3858e5a7402fd85f1f73640dbd96e 806 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 153 174 8.7E-45 T 13-10-2018 AP3564_09245 80e3858e5a7402fd85f1f73640dbd96e 806 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 79 99 2.0E-6 T 13-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 AP3564_09245 80e3858e5a7402fd85f1f73640dbd96e 806 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 259 281 2.0E-6 T 13-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 AP3564_09245 80e3858e5a7402fd85f1f73640dbd96e 806 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 365 387 2.0E-6 T 13-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 AP3564_09245 80e3858e5a7402fd85f1f73640dbd96e 806 Pfam PF13244 Domain of unknown function (DUF4040) 635 699 4.4E-21 T 13-10-2018 IPR025383 Domain of unknown function DUF4040 AP3564_09245 80e3858e5a7402fd85f1f73640dbd96e 806 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 63 116 4.6E-13 T 13-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AP3564_09245 80e3858e5a7402fd85f1f73640dbd96e 806 Pfam PF00361 Proton-conducting membrane transporter 130 415 5.1E-64 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AP3564_04445 f219994dc0d091adc33731239eacb380 181 SUPERFAMILY SSF48371 12 159 3.09E-9 T 13-10-2018 IPR016024 Armadillo-type fold AP3564_04445 f219994dc0d091adc33731239eacb380 181 Gene3D G3DSA:1.25.10.10 6 177 2.1E-5 T 13-10-2018 IPR011989 Armadillo-like helical AP3564_18730 248f60d2ad4c41e431eabc9bbca21e49 170 SUPERFAMILY SSF53271 2 164 1.13E-51 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like AP3564_18730 248f60d2ad4c41e431eabc9bbca21e49 170 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 3 170 39.268 T 13-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 AP3564_18730 248f60d2ad4c41e431eabc9bbca21e49 170 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 3 170 2.4E-72 T 13-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 AP3564_18730 248f60d2ad4c41e431eabc9bbca21e49 170 Pfam PF00156 Phosphoribosyl transferase domain 28 149 7.0E-17 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AP3564_18730 248f60d2ad4c41e431eabc9bbca21e49 170 Gene3D G3DSA:3.40.50.2020 1 170 1.7E-62 T 13-10-2018 AP3564_08410 9fa3b10997fe5af43287f649e8fa975d 396 SMART SM00228 297 363 3.0E-5 T 13-10-2018 IPR001478 PDZ domain GO:0005515 AP3564_08410 9fa3b10997fe5af43287f649e8fa975d 396 Gene3D G3DSA:2.30.42.10 280 371 4.3E-12 T 13-10-2018 AP3564_08410 9fa3b10997fe5af43287f649e8fa975d 396 SUPERFAMILY SSF50156 292 366 5.52E-13 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 AP3564_02245 1c18cb2788c4cab60359c45d50729a8b 302 Gene3D G3DSA:1.10.10.10 1 90 2.4E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_02245 1c18cb2788c4cab60359c45d50729a8b 302 Gene3D G3DSA:3.40.190.10 164 270 1.9E-62 T 13-10-2018 AP3564_02245 1c18cb2788c4cab60359c45d50729a8b 302 SUPERFAMILY SSF53850 89 295 2.72E-38 T 13-10-2018 AP3564_02245 1c18cb2788c4cab60359c45d50729a8b 302 SUPERFAMILY SSF46785 2 86 1.49E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_02245 1c18cb2788c4cab60359c45d50729a8b 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.6E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_02245 1c18cb2788c4cab60359c45d50729a8b 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.6E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_02245 1c18cb2788c4cab60359c45d50729a8b 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.6E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_02245 1c18cb2788c4cab60359c45d50729a8b 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 5.1E-21 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_02245 1c18cb2788c4cab60359c45d50729a8b 302 Pfam PF03466 LysR substrate binding domain 87 294 1.8E-44 T 13-10-2018 IPR005119 LysR, substrate-binding AP3564_02245 1c18cb2788c4cab60359c45d50729a8b 302 Gene3D G3DSA:3.40.190.10 91 288 1.9E-62 T 13-10-2018 AP3564_05160 66cd5e384e3f5c84abcf86de1209d5d8 318 SMART SM01400 11 127 1.9E-81 T 13-10-2018 AP3564_05160 66cd5e384e3f5c84abcf86de1209d5d8 318 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 11 127 2.1E-51 T 13-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 AP3564_05160 66cd5e384e3f5c84abcf86de1209d5d8 318 Pfam PF14572 Phosphoribosyl synthetase-associated domain 209 317 1.5E-25 T 13-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 AP3564_05160 66cd5e384e3f5c84abcf86de1209d5d8 318 Gene3D G3DSA:3.40.50.2020 154 294 5.6E-127 T 13-10-2018 AP3564_05160 66cd5e384e3f5c84abcf86de1209d5d8 318 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 12 318 5.1E-130 T 13-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 AP3564_05160 66cd5e384e3f5c84abcf86de1209d5d8 318 SUPERFAMILY SSF53271 76 309 7.21E-66 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like AP3564_05160 66cd5e384e3f5c84abcf86de1209d5d8 318 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 135 150 - T 13-10-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 AP3564_05160 66cd5e384e3f5c84abcf86de1209d5d8 318 Gene3D G3DSA:3.40.50.2020 14 306 5.6E-127 T 13-10-2018 AP3564_05160 66cd5e384e3f5c84abcf86de1209d5d8 318 Hamap MF_00583_B Putative ribose-phosphate pyrophosphokinase [prs]. 11 318 51.49 T 13-10-2018 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type GO:0004749 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 AP3564_01115 08b9c16a6c5e46e5319206313c3003c3 251 Pfam PF00005 ABC transporter 17 168 3.4E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_01115 08b9c16a6c5e46e5319206313c3003c3 251 PIRSF PIRSF039085 1 244 5.0E-109 T 13-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AP3564_01115 08b9c16a6c5e46e5319206313c3003c3 251 SMART SM00382 26 216 1.8E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_01115 08b9c16a6c5e46e5319206313c3003c3 251 SUPERFAMILY SSF52540 1 238 7.98E-79 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_01115 08b9c16a6c5e46e5319206313c3003c3 251 Gene3D G3DSA:3.40.50.300 1 246 1.3E-75 T 13-10-2018 AP3564_01115 08b9c16a6c5e46e5319206313c3003c3 251 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_04430 4dbfc985824c4bc222e3f94bdf726079 318 SMART SM00062 62 295 0.0032 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AP3564_04430 4dbfc985824c4bc222e3f94bdf726079 318 Gene3D G3DSA:3.40.190.10 137 253 6.5E-75 T 13-10-2018 AP3564_04430 4dbfc985824c4bc222e3f94bdf726079 318 Gene3D G3DSA:3.40.190.10 54 285 6.5E-75 T 13-10-2018 AP3564_04430 4dbfc985824c4bc222e3f94bdf726079 318 SUPERFAMILY SSF53850 47 311 2.23E-52 T 13-10-2018 AP3564_04430 4dbfc985824c4bc222e3f94bdf726079 318 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 13 278 1.1E-71 T 13-10-2018 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 AP3564_04430 4dbfc985824c4bc222e3f94bdf726079 318 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 54 304 4.4E-67 T 13-10-2018 AP3564_13555 98c2261ced1f2096f8d0f12bd64eef16 473 Gene3D G3DSA:3.10.350.10 51 98 1.7E-15 T 13-10-2018 IPR036779 LysM domain superfamily AP3564_13555 98c2261ced1f2096f8d0f12bd64eef16 473 Gene3D G3DSA:3.10.350.10 99 147 1.1E-14 T 13-10-2018 IPR036779 LysM domain superfamily AP3564_13555 98c2261ced1f2096f8d0f12bd64eef16 473 Gene3D G3DSA:3.10.350.10 1 50 1.7E-15 T 13-10-2018 IPR036779 LysM domain superfamily AP3564_13555 98c2261ced1f2096f8d0f12bd64eef16 473 SUPERFAMILY SSF54106 51 96 8.11E-11 T 13-10-2018 AP3564_13555 98c2261ced1f2096f8d0f12bd64eef16 473 SMART SM00636 149 452 1.3E-13 T 13-10-2018 IPR011583 Chitinase II GO:0008061 AP3564_13555 98c2261ced1f2096f8d0f12bd64eef16 473 SUPERFAMILY SSF54106 2 47 4.45E-12 T 13-10-2018 AP3564_13555 98c2261ced1f2096f8d0f12bd64eef16 473 Pfam PF01476 LysM domain 53 96 3.7E-14 T 13-10-2018 IPR018392 LysM domain AP3564_13555 98c2261ced1f2096f8d0f12bd64eef16 473 Pfam PF01476 LysM domain 100 143 4.2E-14 T 13-10-2018 IPR018392 LysM domain AP3564_13555 98c2261ced1f2096f8d0f12bd64eef16 473 Pfam PF01476 LysM domain 4 47 2.0E-13 T 13-10-2018 IPR018392 LysM domain AP3564_13555 98c2261ced1f2096f8d0f12bd64eef16 473 Gene3D G3DSA:3.10.50.10 365 423 2.5E-95 T 13-10-2018 IPR029070 Chitinase insertion domain superfamily AP3564_13555 98c2261ced1f2096f8d0f12bd64eef16 473 Pfam PF00704 Glycosyl hydrolases family 18 226 450 1.1E-22 T 13-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 AP3564_13555 98c2261ced1f2096f8d0f12bd64eef16 473 SUPERFAMILY SSF51445 171 466 5.62E-42 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily AP3564_13555 98c2261ced1f2096f8d0f12bd64eef16 473 SMART SM00257 3 47 4.1E-15 T 13-10-2018 IPR018392 LysM domain AP3564_13555 98c2261ced1f2096f8d0f12bd64eef16 473 SMART SM00257 99 143 5.3E-16 T 13-10-2018 IPR018392 LysM domain AP3564_13555 98c2261ced1f2096f8d0f12bd64eef16 473 SMART SM00257 52 96 2.9E-14 T 13-10-2018 IPR018392 LysM domain AP3564_13555 98c2261ced1f2096f8d0f12bd64eef16 473 Gene3D G3DSA:3.20.20.80 173 458 2.5E-95 T 13-10-2018 AP3564_13555 98c2261ced1f2096f8d0f12bd64eef16 473 SUPERFAMILY SSF54106 98 143 9.16E-11 T 13-10-2018 AP3564_01035 6f59a1c768963a3ee4d7cdce24e2d82d 292 Gene3D G3DSA:3.40.190.290 92 292 7.1E-56 T 13-10-2018 AP3564_01035 6f59a1c768963a3ee4d7cdce24e2d82d 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.1E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_01035 6f59a1c768963a3ee4d7cdce24e2d82d 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.1E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_01035 6f59a1c768963a3ee4d7cdce24e2d82d 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.1E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_01035 6f59a1c768963a3ee4d7cdce24e2d82d 292 SUPERFAMILY SSF53850 91 290 1.42E-40 T 13-10-2018 AP3564_01035 6f59a1c768963a3ee4d7cdce24e2d82d 292 Pfam PF03466 LysR substrate binding domain 91 290 1.5E-46 T 13-10-2018 IPR005119 LysR, substrate-binding AP3564_01035 6f59a1c768963a3ee4d7cdce24e2d82d 292 Gene3D G3DSA:1.10.10.10 1 91 1.4E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_01035 6f59a1c768963a3ee4d7cdce24e2d82d 292 SUPERFAMILY SSF46785 1 85 8.88E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_01035 6f59a1c768963a3ee4d7cdce24e2d82d 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.2E-20 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_00725 da018da7951b556510909be3814b6827 162 Gene3D G3DSA:3.40.50.7700 1 162 6.0E-75 T 13-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 AP3564_00725 da018da7951b556510909be3814b6827 162 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 5 161 2.0E-69 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 AP3564_00725 da018da7951b556510909be3814b6827 162 Pfam PF00731 AIR carboxylase 5 149 6.5E-68 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 AP3564_00725 da018da7951b556510909be3814b6827 162 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 5 158 34.266 T 13-10-2018 IPR033747 Class I PurE AP3564_00725 da018da7951b556510909be3814b6827 162 PIRSF PIRSF001338 1 162 1.8E-71 T 13-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 AP3564_00725 da018da7951b556510909be3814b6827 162 SUPERFAMILY SSF52255 4 160 6.8E-70 T 13-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 AP3564_00725 da018da7951b556510909be3814b6827 162 SMART SM01001 3 154 4.6E-108 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 AP3564_05155 0ce9ea2534412aade4542067e2b033d0 459 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 403 431 - T 13-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AP3564_05155 0ce9ea2534412aade4542067e2b033d0 459 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 3 452 41.921 T 13-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 AP3564_05155 0ce9ea2534412aade4542067e2b033d0 459 SUPERFAMILY SSF53448 4 253 2.91E-68 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AP3564_05155 0ce9ea2534412aade4542067e2b033d0 459 SUPERFAMILY SSF51161 254 447 1.81E-47 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily AP3564_05155 0ce9ea2534412aade4542067e2b033d0 459 Pfam PF00483 Nucleotidyl transferase 6 212 3.2E-26 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AP3564_05155 0ce9ea2534412aade4542067e2b033d0 459 Gene3D G3DSA:2.160.10.10 253 439 1.8E-51 T 13-10-2018 AP3564_05155 0ce9ea2534412aade4542067e2b033d0 459 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 6 453 5.6E-188 T 13-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 AP3564_05155 0ce9ea2534412aade4542067e2b033d0 459 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 267 300 9.7E-8 T 13-10-2018 IPR001451 Hexapeptide repeat AP3564_05155 0ce9ea2534412aade4542067e2b033d0 459 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 395 428 1.1E-7 T 13-10-2018 IPR001451 Hexapeptide repeat AP3564_05155 0ce9ea2534412aade4542067e2b033d0 459 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 318 351 8.4E-8 T 13-10-2018 IPR001451 Hexapeptide repeat AP3564_05155 0ce9ea2534412aade4542067e2b033d0 459 Gene3D G3DSA:3.90.550.10 1 252 3.5E-83 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AP3564_18360 9b1e53c36f8e4a30aaa64e302597c03d 132 TIGRFAM TIGR01354 cyt_deam_tetra: cytidine deaminase 5 130 2.0E-47 T 13-10-2018 IPR006262 Cytidine deaminase, homotetrameric GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199|Reactome: R-HSA-6798695|Reactome: R-HSA-73614 AP3564_18360 9b1e53c36f8e4a30aaa64e302597c03d 132 SUPERFAMILY SSF53927 2 130 2.85E-48 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 AP3564_18360 9b1e53c36f8e4a30aaa64e302597c03d 132 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 53 93 - T 13-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 AP3564_18360 9b1e53c36f8e4a30aaa64e302597c03d 132 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 4 102 2.5E-17 T 13-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain AP3564_18360 9b1e53c36f8e4a30aaa64e302597c03d 132 Gene3D G3DSA:3.40.140.10 1 132 9.3E-60 T 13-10-2018 AP3564_18345 3f95e461ca544d84c3a88c76b7a34876 250 Gene3D G3DSA:3.30.60.100 146 181 3.5E-20 T 13-10-2018 AP3564_18345 3f95e461ca544d84c3a88c76b7a34876 250 Gene3D G3DSA:1.20.1440.120 88 227 3.5E-20 T 13-10-2018 AP3564_18345 3f95e461ca544d84c3a88c76b7a34876 250 SUPERFAMILY SSF57863 80 232 1.15E-46 T 13-10-2018 IPR037278 ARFGAP/RecO-like zinc finger AP3564_18345 3f95e461ca544d84c3a88c76b7a34876 250 SUPERFAMILY SSF50249 1 78 1.71E-19 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_18345 3f95e461ca544d84c3a88c76b7a34876 250 TIGRFAM TIGR00613 reco: DNA repair protein RecO 4 243 6.8E-84 T 13-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 AP3564_18345 3f95e461ca544d84c3a88c76b7a34876 250 Pfam PF11967 Recombination protein O N terminal 1 78 2.2E-24 T 13-10-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal AP3564_18345 3f95e461ca544d84c3a88c76b7a34876 250 Pfam PF02565 Recombination protein O C terminal 83 237 1.2E-46 T 13-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 AP3564_18345 3f95e461ca544d84c3a88c76b7a34876 250 Gene3D G3DSA:2.40.50.140 2 82 1.4E-14 T 13-10-2018 AP3564_18345 3f95e461ca544d84c3a88c76b7a34876 250 Hamap MF_00201 DNA repair protein RecO [recO]. 1 243 31.459 T 13-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 AP3564_09030 11dcf598c7078f8b5b73577b98f603cf 88 Pfam PF11256 Protein of unknown function (DUF3055) 7 86 8.5E-39 T 13-10-2018 IPR021415 Protein of unknown function DUF3055 AP3564_19540 61ccd389be30604800fe61990966090e 265 SUPERFAMILY SSF89550 1 261 3.14E-37 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 AP3564_19540 61ccd389be30604800fe61990966090e 265 Pfam PF02811 PHP domain 4 214 2.1E-14 T 13-10-2018 IPR004013 PHP domain GO:0003824 AP3564_19540 61ccd389be30604800fe61990966090e 265 Pfam PF13263 PHP-associated 233 261 8.3E-5 T 13-10-2018 AP3564_19540 61ccd389be30604800fe61990966090e 265 Gene3D G3DSA:3.20.20.140 1 265 1.1E-68 T 13-10-2018 AP3564_19540 61ccd389be30604800fe61990966090e 265 TIGRFAM TIGR01856 hisJ_fam: histidinol phosphate phosphatase, HisJ family 4 261 1.9E-71 T 13-10-2018 IPR010140 Histidinol phosphate phosphatase, HisJ GO:0000105|GO:0004401 KEGG: 00340+3.1.3.15 AP3564_17330 1dfdacb039441cc6681cdd4221da59d9 150 ProDom PD089241 YPBF MEMBRANE BH1610 TRANSMEMBRANE 16 148 2.0E-14 T 13-10-2018 IPR020210 Uncharacterised protein family, YpbF, transmembrane AP3564_17330 1dfdacb039441cc6681cdd4221da59d9 150 Pfam PF10864 Protein of unknown function (DUF2663) 18 148 2.2E-39 T 13-10-2018 IPR020210 Uncharacterised protein family, YpbF, transmembrane AP3564_18985 b329615660d3bd9b5053b61c70b7f9f7 327 SUPERFAMILY SSF51569 3 323 1.3E-146 T 13-10-2018 AP3564_18985 b329615660d3bd9b5053b61c70b7f9f7 327 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 240 252 - T 13-10-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AP3564_18985 b329615660d3bd9b5053b61c70b7f9f7 327 Pfam PF00490 Delta-aminolevulinic acid dehydratase 5 320 1.5E-155 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AP3564_18985 b329615660d3bd9b5053b61c70b7f9f7 327 PIRSF PIRSF001415 1 324 8.9E-160 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AP3564_18985 b329615660d3bd9b5053b61c70b7f9f7 327 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 150 169 1.3E-59 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AP3564_18985 b329615660d3bd9b5053b61c70b7f9f7 327 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 188 207 1.3E-59 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AP3564_18985 b329615660d3bd9b5053b61c70b7f9f7 327 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 120 134 1.3E-59 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AP3564_18985 b329615660d3bd9b5053b61c70b7f9f7 327 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 265 280 1.3E-59 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AP3564_18985 b329615660d3bd9b5053b61c70b7f9f7 327 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 295 314 1.3E-59 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AP3564_18985 b329615660d3bd9b5053b61c70b7f9f7 327 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 240 256 1.3E-59 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AP3564_18985 b329615660d3bd9b5053b61c70b7f9f7 327 SMART SM01004 2 321 4.9E-248 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AP3564_18985 b329615660d3bd9b5053b61c70b7f9f7 327 Gene3D G3DSA:3.20.20.70 1 322 1.9E-153 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_13460 ab5e08d12e276ef7f3825437dcc6253a 579 SUPERFAMILY SSF55874 435 571 7.86E-18 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_13460 ab5e08d12e276ef7f3825437dcc6253a 579 SUPERFAMILY SSF55781 240 361 1.96E-6 T 13-10-2018 AP3564_13460 ab5e08d12e276ef7f3825437dcc6253a 579 Gene3D G3DSA:3.30.565.10 429 577 4.1E-22 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_13460 ab5e08d12e276ef7f3825437dcc6253a 579 Pfam PF07694 5TMR of 5TMR-LYT 21 202 7.3E-58 T 13-10-2018 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 AP3564_13460 ab5e08d12e276ef7f3825437dcc6253a 579 Pfam PF06580 Histidine kinase 373 451 1.9E-27 T 13-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 AP3564_13460 ab5e08d12e276ef7f3825437dcc6253a 579 Pfam PF13492 GAF domain 239 359 5.7E-8 T 13-10-2018 IPR003018 GAF domain GO:0005515 AP3564_13460 ab5e08d12e276ef7f3825437dcc6253a 579 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 473 572 8.4E-11 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_13460 ab5e08d12e276ef7f3825437dcc6253a 579 Gene3D G3DSA:1.10.1760.20 35 219 7.7E-7 T 13-10-2018 AP3564_13460 ab5e08d12e276ef7f3825437dcc6253a 579 SMART SM00387 467 573 9.1E-6 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_02295 72ebda2aec14d595d495b25295cd8082 375 SUPERFAMILY SSF53633 4 255 3.14E-65 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AP3564_02295 72ebda2aec14d595d495b25295cd8082 375 PIRSF PIRSF000729 1 369 1.1E-136 T 13-10-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 AP3564_02295 72ebda2aec14d595d495b25295cd8082 375 SMART SM00359 278 356 3.1E-20 T 13-10-2018 IPR002478 PUA domain GO:0003723 AP3564_02295 72ebda2aec14d595d495b25295cd8082 375 PRINTS PR00474 Glutamate 5-kinase family signature 147 174 4.2E-52 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AP3564_02295 72ebda2aec14d595d495b25295cd8082 375 PRINTS PR00474 Glutamate 5-kinase family signature 115 136 4.2E-52 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AP3564_02295 72ebda2aec14d595d495b25295cd8082 375 PRINTS PR00474 Glutamate 5-kinase family signature 75 103 4.2E-52 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AP3564_02295 72ebda2aec14d595d495b25295cd8082 375 PRINTS PR00474 Glutamate 5-kinase family signature 209 229 4.2E-52 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AP3564_02295 72ebda2aec14d595d495b25295cd8082 375 PRINTS PR00474 Glutamate 5-kinase family signature 41 55 4.2E-52 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AP3564_02295 72ebda2aec14d595d495b25295cd8082 375 Hamap MF_00456 Glutamate 5-kinase [proB]. 4 268 35.542 T 13-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AP3564_02295 72ebda2aec14d595d495b25295cd8082 375 Pfam PF00696 Amino acid kinase family 4 234 6.8E-44 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 AP3564_02295 72ebda2aec14d595d495b25295cd8082 375 ProSitePatterns PS00902 Glutamate 5-kinase signature. 207 224 - T 13-10-2018 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AP3564_02295 72ebda2aec14d595d495b25295cd8082 375 Gene3D G3DSA:2.30.130.10 267 367 4.3E-29 T 13-10-2018 IPR036974 PUA domain superfamily GO:0003723 AP3564_02295 72ebda2aec14d595d495b25295cd8082 375 SUPERFAMILY SSF88697 278 366 4.03E-20 T 13-10-2018 IPR015947 PUA-like superfamily AP3564_02295 72ebda2aec14d595d495b25295cd8082 375 Pfam PF01472 PUA domain 278 348 1.7E-23 T 13-10-2018 IPR002478 PUA domain GO:0003723 AP3564_02295 72ebda2aec14d595d495b25295cd8082 375 Gene3D G3DSA:3.40.1160.10 1 262 2.5E-83 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AP3564_02295 72ebda2aec14d595d495b25295cd8082 375 TIGRFAM TIGR01027 proB: glutamate 5-kinase 4 366 5.2E-136 T 13-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AP3564_16340 4e9dffd929b8195f457285e62ca8a010 110 Hamap MF_00245 UPF0122 protein . 3 103 22.31 T 13-10-2018 IPR007394 Putative helix-turn-helix protein, YlxM/p13-like AP3564_16340 4e9dffd929b8195f457285e62ca8a010 110 SUPERFAMILY SSF88659 3 98 1.87E-33 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AP3564_16340 4e9dffd929b8195f457285e62ca8a010 110 Pfam PF04297 Putative helix-turn-helix protein, YlxM / p13 like 3 96 4.6E-41 T 13-10-2018 IPR007394 Putative helix-turn-helix protein, YlxM/p13-like AP3564_16340 4e9dffd929b8195f457285e62ca8a010 110 Gene3D G3DSA:1.10.10.10 1 110 3.2E-37 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_03565 cdc4ff491b06e37b035cec9fcabf12bb 500 Pfam PF01609 Transposase DDE domain 209 462 2.6E-5 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_19195 cdc4ff491b06e37b035cec9fcabf12bb 500 Pfam PF01609 Transposase DDE domain 209 462 2.6E-5 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_08830 5f90017b8d6217d81b9f8d3d4873c545 299 Gene3D G3DSA:3.30.70.260 15 102 6.4E-28 T 13-10-2018 AP3564_08830 5f90017b8d6217d81b9f8d3d4873c545 299 Pfam PF00551 Formyl transferase 104 281 1.6E-39 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AP3564_08830 5f90017b8d6217d81b9f8d3d4873c545 299 Gene3D G3DSA:3.40.50.170 104 299 2.3E-73 T 13-10-2018 AP3564_08830 5f90017b8d6217d81b9f8d3d4873c545 299 SUPERFAMILY SSF55021 19 101 4.28E-19 T 13-10-2018 AP3564_08830 5f90017b8d6217d81b9f8d3d4873c545 299 PIRSF PIRSF036480 17 299 7.8E-118 T 13-10-2018 AP3564_08830 5f90017b8d6217d81b9f8d3d4873c545 299 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 55 67 3.9E-63 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AP3564_08830 5f90017b8d6217d81b9f8d3d4873c545 299 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 273 298 3.9E-63 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AP3564_08830 5f90017b8d6217d81b9f8d3d4873c545 299 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 105 127 3.9E-63 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AP3564_08830 5f90017b8d6217d81b9f8d3d4873c545 299 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 127 154 3.9E-63 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AP3564_08830 5f90017b8d6217d81b9f8d3d4873c545 299 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 22 48 3.9E-63 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AP3564_08830 5f90017b8d6217d81b9f8d3d4873c545 299 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 251 273 3.9E-63 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AP3564_08830 5f90017b8d6217d81b9f8d3d4873c545 299 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 17 299 47.581 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AP3564_08830 5f90017b8d6217d81b9f8d3d4873c545 299 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 21 299 7.3E-130 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AP3564_08830 5f90017b8d6217d81b9f8d3d4873c545 299 Pfam PF01842 ACT domain 21 82 3.4E-10 T 13-10-2018 IPR002912 ACT domain AP3564_08830 5f90017b8d6217d81b9f8d3d4873c545 299 SUPERFAMILY SSF53328 104 299 3.66E-63 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AP3564_02760 4749968b8e11d71326bd874c0b8f779f 221 Pfam PF03483 B3/4 domain 64 189 9.5E-21 T 13-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 AP3564_02760 4749968b8e11d71326bd874c0b8f779f 221 Gene3D G3DSA:3.50.40.10 50 202 1.1E-10 T 13-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 AP3564_02760 4749968b8e11d71326bd874c0b8f779f 221 SUPERFAMILY SSF56037 61 218 1.12E-33 T 13-10-2018 AP3564_02760 4749968b8e11d71326bd874c0b8f779f 221 SMART SM00873 62 212 8.0E-13 T 13-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 AP3564_12140 259da8326c901a87b817885f8a814bd1 280 Pfam PF02633 Creatinine amidohydrolase 17 253 2.3E-60 T 13-10-2018 IPR003785 Creatininase/formamide hydrolase KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 AP3564_12140 259da8326c901a87b817885f8a814bd1 280 Gene3D G3DSA:3.40.50.10310 3 262 9.3E-65 T 13-10-2018 IPR024087 Creatininase-like superfamily KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 AP3564_12140 259da8326c901a87b817885f8a814bd1 280 SUPERFAMILY SSF102215 14 261 1.44E-62 T 13-10-2018 IPR024087 Creatininase-like superfamily KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 AP3564_09150 12b34138cad19e8cb3b7961810117e2c 82 Pfam PF14166 YueH-like protein 2 81 3.2E-24 T 13-10-2018 IPR020260 Uncharacterised protein family YueH AP3564_09150 12b34138cad19e8cb3b7961810117e2c 82 ProDom PD060056 YUEH 1 82 3.0E-14 T 13-10-2018 IPR020260 Uncharacterised protein family YueH AP3564_12130 a47d36c41d92cb748c498a7eff644e78 445 Gene3D G3DSA:3.20.20.140 57 353 8.6E-141 T 13-10-2018 AP3564_12130 a47d36c41d92cb748c498a7eff644e78 445 Gene3D G3DSA:2.30.40.10 11 429 8.6E-141 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AP3564_12130 a47d36c41d92cb748c498a7eff644e78 445 Hamap MF_01281 5'-deoxyadenosine deaminase [dadD]. 3 437 40.156 T 13-10-2018 IPR023512 Deaminase MtaD/DadD GO:0019239 AP3564_12130 a47d36c41d92cb748c498a7eff644e78 445 Pfam PF01979 Amidohydrolase family 53 410 3.7E-77 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AP3564_12130 a47d36c41d92cb748c498a7eff644e78 445 SUPERFAMILY SSF51556 56 361 3.34E-97 T 13-10-2018 IPR032466 Metal-dependent hydrolase AP3564_12130 a47d36c41d92cb748c498a7eff644e78 445 SUPERFAMILY SSF51338 3 437 1.64E-31 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AP3564_14520 8b87240a8142073893ea385c082fc830 182 SUPERFAMILY SSF46689 5 72 2.31E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_14520 8b87240a8142073893ea385c082fc830 182 Pfam PF14278 Transcriptional regulator C-terminal region 89 159 4.4E-14 T 13-10-2018 IPR039532 Transcriptional regulator TetR, C-terminal, Firmicutes type AP3564_14520 8b87240a8142073893ea385c082fc830 182 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 60 5.4E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_14520 8b87240a8142073893ea385c082fc830 182 Gene3D G3DSA:1.10.357.10 4 174 8.9E-48 T 13-10-2018 AP3564_14520 8b87240a8142073893ea385c082fc830 182 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 8.3E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_14520 8b87240a8142073893ea385c082fc830 182 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 8.3E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_18825 1728af8eddc2c9e861c131c5ae34c729 281 PIRSF PIRSF006250 1 278 4.4E-103 T 13-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 AP3564_18825 1728af8eddc2c9e861c131c5ae34c729 281 Gene3D G3DSA:3.20.20.70 123 265 1.4E-105 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_18825 1728af8eddc2c9e861c131c5ae34c729 281 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 10 274 8.7E-104 T 13-10-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 AP3564_18825 1728af8eddc2c9e861c131c5ae34c729 281 SUPERFAMILY SSF54675 2 108 1.41E-27 T 13-10-2018 AP3564_18825 1728af8eddc2c9e861c131c5ae34c729 281 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 19 107 8.7E-26 T 13-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 AP3564_18825 1728af8eddc2c9e861c131c5ae34c729 281 Gene3D G3DSA:3.90.1170.20 13 273 1.4E-105 T 13-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 AP3564_18825 1728af8eddc2c9e861c131c5ae34c729 281 SUPERFAMILY SSF51690 109 275 7.85E-60 T 13-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 AP3564_18825 1728af8eddc2c9e861c131c5ae34c729 281 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 109 273 2.1E-67 T 13-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 AP3564_06960 e4e7f7c1255a1a32f847992aef6c22b3 339 Pfam PF00814 Glycoprotease family 26 310 7.0E-104 T 13-10-2018 IPR000905 Gcp-like domain AP3564_06960 e4e7f7c1255a1a32f847992aef6c22b3 339 ProSitePatterns PS01016 Glycoprotease family signature. 99 119 - T 13-10-2018 IPR017860 Peptidase M22, conserved site Reactome: R-HSA-6782315 AP3564_06960 e4e7f7c1255a1a32f847992aef6c22b3 339 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 266 275 7.8E-52 T 13-10-2018 IPR017861 Kae1/TsaD family AP3564_06960 e4e7f7c1255a1a32f847992aef6c22b3 339 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 156 177 7.8E-52 T 13-10-2018 IPR017861 Kae1/TsaD family AP3564_06960 e4e7f7c1255a1a32f847992aef6c22b3 339 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 100 119 7.8E-52 T 13-10-2018 IPR017861 Kae1/TsaD family AP3564_06960 e4e7f7c1255a1a32f847992aef6c22b3 339 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 133 145 7.8E-52 T 13-10-2018 IPR017861 Kae1/TsaD family AP3564_06960 e4e7f7c1255a1a32f847992aef6c22b3 339 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 7 20 7.8E-52 T 13-10-2018 IPR017861 Kae1/TsaD family AP3564_06960 e4e7f7c1255a1a32f847992aef6c22b3 339 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 79 99 7.8E-52 T 13-10-2018 IPR017861 Kae1/TsaD family AP3564_06960 e4e7f7c1255a1a32f847992aef6c22b3 339 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 7 310 4.5E-107 T 13-10-2018 IPR017861 Kae1/TsaD family AP3564_06960 e4e7f7c1255a1a32f847992aef6c22b3 339 Gene3D G3DSA:3.30.420.40 6 317 1.7E-123 T 13-10-2018 AP3564_06960 e4e7f7c1255a1a32f847992aef6c22b3 339 SUPERFAMILY SSF53067 104 311 4.94E-42 T 13-10-2018 AP3564_06960 e4e7f7c1255a1a32f847992aef6c22b3 339 SUPERFAMILY SSF53067 5 125 1.55E-32 T 13-10-2018 AP3564_06960 e4e7f7c1255a1a32f847992aef6c22b3 339 Gene3D G3DSA:3.30.420.40 131 297 1.7E-123 T 13-10-2018 AP3564_06960 e4e7f7c1255a1a32f847992aef6c22b3 339 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 4 335 62.009 T 13-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 AP3564_06960 e4e7f7c1255a1a32f847992aef6c22b3 339 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 6 314 5.1E-132 T 13-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 AP3564_10460 d5d89ac95744eb6ef69a113d27ffda4c 289 PIRSF PIRSF032442 32 288 2.1E-85 T 13-10-2018 IPR016997 Uncharacterised conserved protein UCP032442 AP3564_10460 d5d89ac95744eb6ef69a113d27ffda4c 289 Pfam PF13529 Peptidase_C39 like family 94 258 2.4E-43 T 13-10-2018 IPR039564 Peptidase C39-like AP3564_10460 d5d89ac95744eb6ef69a113d27ffda4c 289 Gene3D G3DSA:3.90.70.10 88 289 5.1E-77 T 13-10-2018 AP3564_00335 30f02d8bd71c4dbc05bc6e5dbe437b37 470 Gene3D G3DSA:3.40.640.10 94 464 5.9E-108 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_00335 30f02d8bd71c4dbc05bc6e5dbe437b37 470 Pfam PF00155 Aminotransferase class I and II 123 409 6.8E-12 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AP3564_00335 30f02d8bd71c4dbc05bc6e5dbe437b37 470 SMART SM00345 19 78 6.4E-12 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_00335 30f02d8bd71c4dbc05bc6e5dbe437b37 470 SUPERFAMILY SSF53383 94 469 1.44E-62 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_00335 30f02d8bd71c4dbc05bc6e5dbe437b37 470 SUPERFAMILY SSF46785 10 82 1.11E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_00335 30f02d8bd71c4dbc05bc6e5dbe437b37 470 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 78 6.9E-14 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_00335 30f02d8bd71c4dbc05bc6e5dbe437b37 470 Gene3D G3DSA:1.10.10.10 1 92 4.4E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_14810 0a4c142252368c7fdac6b39317359392 148 Pfam PF10747 Sporulation inhibitor of replication protein SirA 2 143 2.4E-35 T 13-10-2018 IPR019683 Sporulation inhibitor of replication protein SirA AP3564_14810 0a4c142252368c7fdac6b39317359392 148 Gene3D G3DSA:3.30.310.250 1 148 1.9E-45 T 13-10-2018 IPR038449 SirA superfamily AP3564_11210 84f320c6ab9e93c26d659c94e9cc1a19 285 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 5 184 4.9E-67 T 13-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AP3564_11210 84f320c6ab9e93c26d659c94e9cc1a19 285 Gene3D G3DSA:3.40.50.720 1 188 1.6E-73 T 13-10-2018 AP3564_11210 84f320c6ab9e93c26d659c94e9cc1a19 285 Gene3D G3DSA:1.10.1040.50 189 285 2.5E-32 T 13-10-2018 AP3564_11210 84f320c6ab9e93c26d659c94e9cc1a19 285 SUPERFAMILY SSF48179 185 285 2.55E-26 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AP3564_11210 84f320c6ab9e93c26d659c94e9cc1a19 285 PIRSF PIRSF000105 1 285 1.0E-89 T 13-10-2018 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 AP3564_11210 84f320c6ab9e93c26d659c94e9cc1a19 285 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 186 283 1.7E-28 T 13-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AP3564_11210 84f320c6ab9e93c26d659c94e9cc1a19 285 SUPERFAMILY SSF51735 2 185 7.18E-58 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_17720 75c3be1af8852a8b0d4a1a06e96265ac 223 SMART SM00382 27 202 1.6E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_17720 75c3be1af8852a8b0d4a1a06e96265ac 223 SUPERFAMILY SSF52540 2 207 7.1E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_17720 75c3be1af8852a8b0d4a1a06e96265ac 223 Pfam PF00005 ABC transporter 18 153 2.5E-23 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_17720 75c3be1af8852a8b0d4a1a06e96265ac 223 Gene3D G3DSA:3.40.50.300 1 221 6.0E-48 T 13-10-2018 AP3564_11415 31969029b65c163e707d6434c7e9e073 419 SUPERFAMILY SSF56672 21 356 1.33E-61 T 13-10-2018 AP3564_11415 31969029b65c163e707d6434c7e9e073 419 TIGRFAM TIGR04416 group_II_RT_mat: group II intron reverse transcriptase/maturase 10 353 3.8E-133 T 13-10-2018 IPR030931 Group II intron reverse transcriptase/maturase AP3564_11415 31969029b65c163e707d6434c7e9e073 419 Pfam PF08388 Group II intron, maturase-specific domain 288 359 9.7E-21 T 13-10-2018 IPR013597 Group II intron, maturase-specific AP3564_11415 31969029b65c163e707d6434c7e9e073 419 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 66 272 2.0E-47 T 13-10-2018 IPR000477 Reverse transcriptase domain AP3564_11415 31969029b65c163e707d6434c7e9e073 419 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 129 147 7.4E-7 T 13-10-2018 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 AP3564_11415 31969029b65c163e707d6434c7e9e073 419 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 61 74 7.4E-7 T 13-10-2018 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 AP3564_11415 31969029b65c163e707d6434c7e9e073 419 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 187 200 7.4E-7 T 13-10-2018 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 AP3564_19030 31969029b65c163e707d6434c7e9e073 419 SUPERFAMILY SSF56672 21 356 1.33E-61 T 13-10-2018 AP3564_19030 31969029b65c163e707d6434c7e9e073 419 TIGRFAM TIGR04416 group_II_RT_mat: group II intron reverse transcriptase/maturase 10 353 3.8E-133 T 13-10-2018 IPR030931 Group II intron reverse transcriptase/maturase AP3564_19030 31969029b65c163e707d6434c7e9e073 419 Pfam PF08388 Group II intron, maturase-specific domain 288 359 9.7E-21 T 13-10-2018 IPR013597 Group II intron, maturase-specific AP3564_19030 31969029b65c163e707d6434c7e9e073 419 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 66 272 2.0E-47 T 13-10-2018 IPR000477 Reverse transcriptase domain AP3564_19030 31969029b65c163e707d6434c7e9e073 419 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 129 147 7.4E-7 T 13-10-2018 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 AP3564_19030 31969029b65c163e707d6434c7e9e073 419 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 61 74 7.4E-7 T 13-10-2018 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 AP3564_19030 31969029b65c163e707d6434c7e9e073 419 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 187 200 7.4E-7 T 13-10-2018 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 AP3564_10600 31969029b65c163e707d6434c7e9e073 419 SUPERFAMILY SSF56672 21 356 1.33E-61 T 13-10-2018 AP3564_10600 31969029b65c163e707d6434c7e9e073 419 TIGRFAM TIGR04416 group_II_RT_mat: group II intron reverse transcriptase/maturase 10 353 3.8E-133 T 13-10-2018 IPR030931 Group II intron reverse transcriptase/maturase AP3564_10600 31969029b65c163e707d6434c7e9e073 419 Pfam PF08388 Group II intron, maturase-specific domain 288 359 9.7E-21 T 13-10-2018 IPR013597 Group II intron, maturase-specific AP3564_10600 31969029b65c163e707d6434c7e9e073 419 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 66 272 2.0E-47 T 13-10-2018 IPR000477 Reverse transcriptase domain AP3564_10600 31969029b65c163e707d6434c7e9e073 419 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 129 147 7.4E-7 T 13-10-2018 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 AP3564_10600 31969029b65c163e707d6434c7e9e073 419 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 61 74 7.4E-7 T 13-10-2018 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 AP3564_10600 31969029b65c163e707d6434c7e9e073 419 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 187 200 7.4E-7 T 13-10-2018 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 AP3564_14155 b28d0cabe6a8e255820c52a3ec96547e 568 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 346 361 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AP3564_14155 b28d0cabe6a8e255820c52a3ec96547e 568 SMART SM00091 9 75 3.3E-6 T 13-10-2018 IPR000014 PAS domain AP3564_14155 b28d0cabe6a8e255820c52a3ec96547e 568 SMART SM00091 119 185 2.2E-6 T 13-10-2018 IPR000014 PAS domain AP3564_14155 b28d0cabe6a8e255820c52a3ec96547e 568 Pfam PF00158 Sigma-54 interaction domain 260 426 4.2E-71 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AP3564_14155 b28d0cabe6a8e255820c52a3ec96547e 568 SMART SM00382 279 423 2.1E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_14155 b28d0cabe6a8e255820c52a3ec96547e 568 SUPERFAMILY SSF55785 11 109 1.4E-9 T 13-10-2018 IPR035965 PAS domain superfamily AP3564_14155 b28d0cabe6a8e255820c52a3ec96547e 568 Gene3D G3DSA:3.30.450.20 7 109 7.4E-19 T 13-10-2018 AP3564_14155 b28d0cabe6a8e255820c52a3ec96547e 568 Pfam PF00989 PAS fold 12 108 9.5E-10 T 13-10-2018 IPR013767 PAS fold GO:0006355 AP3564_14155 b28d0cabe6a8e255820c52a3ec96547e 568 Pfam PF00989 PAS fold 120 224 3.0E-10 T 13-10-2018 IPR013767 PAS fold GO:0006355 AP3564_14155 b28d0cabe6a8e255820c52a3ec96547e 568 SUPERFAMILY SSF52540 261 502 2.33E-68 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_14155 b28d0cabe6a8e255820c52a3ec96547e 568 Gene3D G3DSA:1.10.10.60 509 562 1.1E-8 T 13-10-2018 AP3564_14155 b28d0cabe6a8e255820c52a3ec96547e 568 SUPERFAMILY SSF55785 112 225 1.92E-16 T 13-10-2018 IPR035965 PAS domain superfamily AP3564_14155 b28d0cabe6a8e255820c52a3ec96547e 568 Gene3D G3DSA:1.10.8.60 432 508 6.0E-21 T 13-10-2018 AP3564_14155 b28d0cabe6a8e255820c52a3ec96547e 568 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 119 234 5.7E-21 T 13-10-2018 IPR000014 PAS domain AP3564_14155 b28d0cabe6a8e255820c52a3ec96547e 568 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 11 115 1.6E-5 T 13-10-2018 IPR000014 PAS domain AP3564_14155 b28d0cabe6a8e255820c52a3ec96547e 568 Gene3D G3DSA:3.30.450.20 117 241 2.3E-20 T 13-10-2018 AP3564_14155 b28d0cabe6a8e255820c52a3ec96547e 568 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 472 481 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site AP3564_14155 b28d0cabe6a8e255820c52a3ec96547e 568 SUPERFAMILY SSF46689 509 562 4.48E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_14155 b28d0cabe6a8e255820c52a3ec96547e 568 Gene3D G3DSA:3.40.50.300 244 431 2.8E-67 T 13-10-2018 AP3564_12045 acaf65cb4207dc44b8d6655492f66a35 415 SUPERFAMILY SSF53822 44 406 2.24E-110 T 13-10-2018 IPR028082 Periplasmic binding protein-like I AP3564_12045 acaf65cb4207dc44b8d6655492f66a35 415 Pfam PF13433 Periplasmic binding protein domain 44 403 1.1E-168 T 13-10-2018 AP3564_12045 acaf65cb4207dc44b8d6655492f66a35 415 TIGRFAM TIGR03407 urea_ABC_UrtA: urea ABC transporter, urea binding protein 44 400 7.3E-188 T 13-10-2018 IPR017777 Urea ABC transporter, substrate-binding protein UrtA-like AP3564_12045 acaf65cb4207dc44b8d6655492f66a35 415 Gene3D G3DSA:3.40.50.2300 159 391 5.5E-159 T 13-10-2018 AP3564_12045 acaf65cb4207dc44b8d6655492f66a35 415 Gene3D G3DSA:3.40.50.2300 46 372 5.5E-159 T 13-10-2018 AP3564_06215 8ea20cefdee38dbf0b4d7ac0c9d4dcfd 143 Pfam PF13546 DDE superfamily endonuclease 5 108 1.5E-9 T 13-10-2018 IPR038721 Transposase IS701-like, DDE domain AP3564_06215 8ea20cefdee38dbf0b4d7ac0c9d4dcfd 143 SUPERFAMILY SSF53098 4 106 1.97E-9 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_07205 85971ffe22380ec5ee9918b355bec50b 292 SUPERFAMILY SSF56112 5 287 2.84E-46 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily AP3564_07205 85971ffe22380ec5ee9918b355bec50b 292 Gene3D G3DSA:3.90.1200.10 97 291 6.7E-56 T 13-10-2018 AP3564_07205 85971ffe22380ec5ee9918b355bec50b 292 Pfam PF03881 Fructosamine kinase 10 290 4.5E-77 T 13-10-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 AP3564_07205 85971ffe22380ec5ee9918b355bec50b 292 PIRSF PIRSF006221 3 292 7.3E-79 T 13-10-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 AP3564_07205 85971ffe22380ec5ee9918b355bec50b 292 Gene3D G3DSA:3.30.200.20 2 95 6.1E-15 T 13-10-2018 AP3564_18970 1c83c459871fffa1d47799446111b12e 337 TIGRFAM TIGR02904 spore_ysxE: spore coat protein YsxE 10 312 5.1E-80 T 13-10-2018 IPR014253 Spore coat protein YsxE AP3564_18970 1c83c459871fffa1d47799446111b12e 337 SUPERFAMILY SSF56112 4 314 1.41E-16 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily AP3564_18970 1c83c459871fffa1d47799446111b12e 337 Gene3D G3DSA:3.90.1200.10 94 318 4.4E-23 T 13-10-2018 AP3564_18970 1c83c459871fffa1d47799446111b12e 337 Gene3D G3DSA:3.30.200.20 1 93 4.1E-9 T 13-10-2018 AP3564_07255 a764afab485da7cd0d6f949c9cd34c62 393 Pfam PF01609 Transposase DDE domain 102 344 7.0E-18 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_07255 a764afab485da7cd0d6f949c9cd34c62 393 SUPERFAMILY SSF53098 27 343 3.64E-21 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_07255 a764afab485da7cd0d6f949c9cd34c62 393 Gene3D G3DSA:3.90.350.10 212 327 3.1E-5 T 13-10-2018 IPR014736 Transposase, Tn5-like, core AP3564_02020 4ef174ca7675613f7c3d9aea9b1606e5 237 Gene3D G3DSA:1.20.120.530 93 236 1.9E-23 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AP3564_02020 4ef174ca7675613f7c3d9aea9b1606e5 237 Pfam PF07729 FCD domain 98 223 6.0E-20 T 13-10-2018 IPR011711 GntR, C-terminal AP3564_02020 4ef174ca7675613f7c3d9aea9b1606e5 237 SUPERFAMILY SSF46785 10 79 1.09E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_02020 4ef174ca7675613f7c3d9aea9b1606e5 237 SMART SM00895 98 224 1.3E-14 T 13-10-2018 IPR011711 GntR, C-terminal AP3564_02020 4ef174ca7675613f7c3d9aea9b1606e5 237 SUPERFAMILY SSF48008 94 231 1.18E-23 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AP3564_02020 4ef174ca7675613f7c3d9aea9b1606e5 237 SMART SM00345 16 75 5.3E-21 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_02020 4ef174ca7675613f7c3d9aea9b1606e5 237 Gene3D G3DSA:1.10.10.10 8 76 2.5E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_02020 4ef174ca7675613f7c3d9aea9b1606e5 237 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 3.9E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_02020 4ef174ca7675613f7c3d9aea9b1606e5 237 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 3.9E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_02020 4ef174ca7675613f7c3d9aea9b1606e5 237 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 75 2.3E-19 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_02785 a1819333890fe7d2d7071dfaa523a9a4 631 SMART SM00763 21 371 1.2E-201 T 13-10-2018 IPR013153 PrkA AAA domain AP3564_02785 a1819333890fe7d2d7071dfaa523a9a4 631 PIRSF PIRSF000549 1 631 2.7E-267 T 13-10-2018 IPR016230 Serine-protein kinase, PrkA GO:0004672 AP3564_02785 a1819333890fe7d2d7071dfaa523a9a4 631 Pfam PF08298 PrkA AAA domain 22 371 2.2E-154 T 13-10-2018 IPR013153 PrkA AAA domain AP3564_02785 a1819333890fe7d2d7071dfaa523a9a4 631 Pfam PF06798 PrkA serine protein kinase C-terminal domain 375 624 1.0E-93 T 13-10-2018 IPR010650 PrkA C-terminal domain AP3564_02785 a1819333890fe7d2d7071dfaa523a9a4 631 SUPERFAMILY SSF52540 67 469 4.37E-13 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_18185 78f8f8914f0879491362a7928b9395e1 328 TIGRFAM TIGR02136 ptsS_2: phosphate binding protein 7 312 2.4E-96 T 13-10-2018 IPR011862 Phosphate binding protein GO:0042301 AP3564_18185 78f8f8914f0879491362a7928b9395e1 328 Gene3D G3DSA:3.40.190.10 134 273 1.3E-93 T 13-10-2018 AP3564_18185 78f8f8914f0879491362a7928b9395e1 328 Gene3D G3DSA:3.40.190.10 55 310 1.3E-93 T 13-10-2018 AP3564_18185 78f8f8914f0879491362a7928b9395e1 328 SUPERFAMILY SSF53850 53 325 1.73E-80 T 13-10-2018 AP3564_18185 78f8f8914f0879491362a7928b9395e1 328 Pfam PF12849 PBP superfamily domain 45 298 2.3E-36 T 13-10-2018 IPR024370 PBP domain AP3564_06825 1b110110e47cc42f8ced2384f36d5ddc 133 Gene3D G3DSA:3.30.565.10 5 131 3.1E-20 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_06825 1b110110e47cc42f8ced2384f36d5ddc 133 Pfam PF13581 Histidine kinase-like ATPase domain 17 130 2.7E-10 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_06825 1b110110e47cc42f8ced2384f36d5ddc 133 SMART SM00387 34 133 1.5E-4 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_06825 1b110110e47cc42f8ced2384f36d5ddc 133 SUPERFAMILY SSF55874 23 128 5.76E-17 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_02210 ba5a0396682a98718be783fed31cd066 324 Pfam PF01758 Sodium Bile acid symporter family 43 219 5.7E-21 T 13-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 AP3564_02210 ba5a0396682a98718be783fed31cd066 324 Gene3D G3DSA:1.20.1530.20 6 312 7.8E-64 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily AP3564_13535 69f711aef72f554ea1dc62e1f106fe2a 170 SUPERFAMILY SSF88946 2 98 5.89E-22 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AP3564_13535 69f711aef72f554ea1dc62e1f106fe2a 170 SUPERFAMILY SSF88659 101 161 2.62E-17 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AP3564_13535 69f711aef72f554ea1dc62e1f106fe2a 170 Pfam PF04542 Sigma-70 region 2 15 81 3.4E-13 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AP3564_13535 69f711aef72f554ea1dc62e1f106fe2a 170 Gene3D G3DSA:1.10.1740.10 1 79 1.4E-19 T 13-10-2018 AP3564_13535 69f711aef72f554ea1dc62e1f106fe2a 170 Pfam PF08281 Sigma-70, region 4 105 157 4.3E-18 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AP3564_13535 69f711aef72f554ea1dc62e1f106fe2a 170 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 10 160 4.4E-26 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AP3564_13535 69f711aef72f554ea1dc62e1f106fe2a 170 Gene3D G3DSA:1.10.10.10 97 164 6.9E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_13790 ca8980c2fb6b96f7651dfd1ba9c489ee 182 ProDom PD106196 YISN IG BH1722 6 174 6.0E-56 T 13-10-2018 IPR024488 Protein of unknown function DUF2777 AP3564_13790 ca8980c2fb6b96f7651dfd1ba9c489ee 182 Pfam PF10949 Protein of unknown function (DUF2777) 5 179 1.3E-75 T 13-10-2018 IPR024488 Protein of unknown function DUF2777 AP3564_18540 71daefe0e08bfb52bb72c4172c090caf 246 Gene3D G3DSA:2.20.25.110 143 204 3.9E-80 T 13-10-2018 AP3564_18540 71daefe0e08bfb52bb72c4172c090caf 246 Gene3D G3DSA:3.40.50.150 5 243 3.9E-80 T 13-10-2018 AP3564_18540 71daefe0e08bfb52bb72c4172c090caf 246 SUPERFAMILY SSF53335 3 245 3.82E-52 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_18540 71daefe0e08bfb52bb72c4172c090caf 246 Pfam PF13649 Methyltransferase domain 40 135 4.5E-18 T 13-10-2018 AP3564_19445 b1a16f528db765e7a741f3d6f1d0e5bb 456 Gene3D G3DSA:1.20.200.10 120 449 1.6E-200 T 13-10-2018 AP3564_19445 b1a16f528db765e7a741f3d6f1d0e5bb 456 Gene3D G3DSA:1.10.275.10 26 230 1.6E-200 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal AP3564_19445 b1a16f528db765e7a741f3d6f1d0e5bb 456 Gene3D G3DSA:1.10.40.30 361 433 1.6E-200 T 13-10-2018 AP3564_19445 b1a16f528db765e7a741f3d6f1d0e5bb 456 PRINTS PR00145 Argininosuccinate lyase family signature 311 330 1.0E-68 T 13-10-2018 AP3564_19445 b1a16f528db765e7a741f3d6f1d0e5bb 456 PRINTS PR00145 Argininosuccinate lyase family signature 143 163 1.0E-68 T 13-10-2018 AP3564_19445 b1a16f528db765e7a741f3d6f1d0e5bb 456 PRINTS PR00145 Argininosuccinate lyase family signature 232 256 1.0E-68 T 13-10-2018 AP3564_19445 b1a16f528db765e7a741f3d6f1d0e5bb 456 PRINTS PR00145 Argininosuccinate lyase family signature 102 124 1.0E-68 T 13-10-2018 AP3564_19445 b1a16f528db765e7a741f3d6f1d0e5bb 456 PRINTS PR00145 Argininosuccinate lyase family signature 194 210 1.0E-68 T 13-10-2018 AP3564_19445 b1a16f528db765e7a741f3d6f1d0e5bb 456 PRINTS PR00145 Argininosuccinate lyase family signature 276 292 1.0E-68 T 13-10-2018 AP3564_19445 b1a16f528db765e7a741f3d6f1d0e5bb 456 SUPERFAMILY SSF48557 4 455 1.26E-157 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 AP3564_19445 b1a16f528db765e7a741f3d6f1d0e5bb 456 Hamap MF_00006 Argininosuccinate lyase [argH]. 3 454 45.494 T 13-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AP3564_19445 b1a16f528db765e7a741f3d6f1d0e5bb 456 ProSitePatterns PS00163 Fumarate lyases signature. 276 285 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AP3564_19445 b1a16f528db765e7a741f3d6f1d0e5bb 456 Pfam PF14698 Argininosuccinate lyase C-terminal 364 432 1.1E-24 T 13-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AP3564_19445 b1a16f528db765e7a741f3d6f1d0e5bb 456 Pfam PF00206 Lyase 7 301 1.1E-81 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal AP3564_19445 b1a16f528db765e7a741f3d6f1d0e5bb 456 PRINTS PR00149 Fumarate lyase superfamily signature 148 166 2.5E-29 T 13-10-2018 IPR000362 Fumarate lyase family AP3564_19445 b1a16f528db765e7a741f3d6f1d0e5bb 456 PRINTS PR00149 Fumarate lyase superfamily signature 232 259 2.5E-29 T 13-10-2018 IPR000362 Fumarate lyase family AP3564_19445 b1a16f528db765e7a741f3d6f1d0e5bb 456 PRINTS PR00149 Fumarate lyase superfamily signature 276 292 2.5E-29 T 13-10-2018 IPR000362 Fumarate lyase family AP3564_19445 b1a16f528db765e7a741f3d6f1d0e5bb 456 PRINTS PR00149 Fumarate lyase superfamily signature 103 121 2.5E-29 T 13-10-2018 IPR000362 Fumarate lyase family AP3564_19445 b1a16f528db765e7a741f3d6f1d0e5bb 456 TIGRFAM TIGR00838 argH: argininosuccinate lyase 4 454 8.0E-215 T 13-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AP3564_17530 b163ec92207831bdbbc7b33cbd87967a 388 SUPERFAMILY SSF69189 278 370 1.86E-20 T 13-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AP3564_17530 b163ec92207831bdbbc7b33cbd87967a 388 SUPERFAMILY SSF56601 5 278 4.01E-83 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AP3564_17530 b163ec92207831bdbbc7b33cbd87967a 388 SMART SM00936 278 369 4.8E-25 T 13-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AP3564_17530 b163ec92207831bdbbc7b33cbd87967a 388 Gene3D G3DSA:2.60.410.10 278 368 2.6E-20 T 13-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AP3564_17530 b163ec92207831bdbbc7b33cbd87967a 388 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 61 72 3.7E-18 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AP3564_17530 b163ec92207831bdbbc7b33cbd87967a 388 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 114 131 3.7E-18 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AP3564_17530 b163ec92207831bdbbc7b33cbd87967a 388 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 141 154 3.7E-18 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AP3564_17530 b163ec92207831bdbbc7b33cbd87967a 388 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 36 259 9.7E-90 T 13-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 AP3564_17530 b163ec92207831bdbbc7b33cbd87967a 388 Gene3D G3DSA:3.40.710.10 18 277 4.4E-93 T 13-10-2018 AP3564_17530 b163ec92207831bdbbc7b33cbd87967a 388 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 278 367 4.1E-19 T 13-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AP3564_04050 bd405ab976b817d107d44aa3339e6d82 172 Gene3D G3DSA:3.40.50.10490 1 171 1.8E-56 T 13-10-2018 AP3564_04050 bd405ab976b817d107d44aa3339e6d82 172 Pfam PF10740 Domain of unknown function (DUF2529) 1 167 2.5E-59 T 13-10-2018 IPR019676 Domain of unknown function (DUF2529) AP3564_04050 bd405ab976b817d107d44aa3339e6d82 172 SUPERFAMILY SSF53697 1 162 2.61E-5 T 13-10-2018 AP3564_14875 db3713e4aa8d7a8bbcd4c059d55a444c 325 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 9.6E-7 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AP3564_14875 db3713e4aa8d7a8bbcd4c059d55a444c 325 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 9.6E-7 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AP3564_14875 db3713e4aa8d7a8bbcd4c059d55a444c 325 Gene3D G3DSA:1.10.260.40 3 57 1.4E-21 T 13-10-2018 AP3564_14875 db3713e4aa8d7a8bbcd4c059d55a444c 325 SUPERFAMILY SSF53822 61 325 1.07E-59 T 13-10-2018 IPR028082 Periplasmic binding protein-like I AP3564_14875 db3713e4aa8d7a8bbcd4c059d55a444c 325 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 3.3E-21 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AP3564_14875 db3713e4aa8d7a8bbcd4c059d55a444c 325 SMART SM00354 1 71 1.5E-33 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AP3564_14875 db3713e4aa8d7a8bbcd4c059d55a444c 325 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 13-10-2018 AP3564_14875 db3713e4aa8d7a8bbcd4c059d55a444c 325 Gene3D G3DSA:3.40.50.2300 158 285 2.2E-60 T 13-10-2018 AP3564_14875 db3713e4aa8d7a8bbcd4c059d55a444c 325 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 61 301 3.9E-30 T 13-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain AP3564_14875 db3713e4aa8d7a8bbcd4c059d55a444c 325 SUPERFAMILY SSF47413 1 59 6.75E-18 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AP3564_14875 db3713e4aa8d7a8bbcd4c059d55a444c 325 Gene3D G3DSA:3.40.50.2300 59 300 2.2E-60 T 13-10-2018 AP3564_13875 bbb9c6b839672dc35206b68ae7fa7caf 137 Gene3D G3DSA:3.40.250.10 36 115 6.9E-6 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily AP3564_13875 bbb9c6b839672dc35206b68ae7fa7caf 137 SUPERFAMILY SSF52821 16 113 9.28E-7 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily AP3564_04880 6dfb7c99f336422c6656b298e4571b1b 369 Gene3D G3DSA:3.40.50.300 7 345 4.8E-111 T 13-10-2018 AP3564_04880 6dfb7c99f336422c6656b298e4571b1b 369 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 1 365 1.1E-130 T 13-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 AP3564_04880 6dfb7c99f336422c6656b298e4571b1b 369 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 346 2.0E-17 T 13-10-2018 IPR003395 RecF/RecN/SMC, N-terminal AP3564_04880 6dfb7c99f336422c6656b298e4571b1b 369 ProSitePatterns PS00618 RecF protein signature 2. 312 330 - T 13-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 AP3564_04880 6dfb7c99f336422c6656b298e4571b1b 369 Gene3D G3DSA:1.20.1050.90 119 311 4.8E-111 T 13-10-2018 AP3564_04880 6dfb7c99f336422c6656b298e4571b1b 369 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 369 102.657 T 13-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 AP3564_04880 6dfb7c99f336422c6656b298e4571b1b 369 SUPERFAMILY SSF52540 2 350 1.93E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_04880 6dfb7c99f336422c6656b298e4571b1b 369 ProSitePatterns PS00617 RecF protein signature 1. 116 136 - T 13-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 AP3564_01485 0ccb1887bfdbf57461857f52f819c729 318 Pfam PF00795 Carbon-nitrogen hydrolase 9 283 5.4E-64 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 AP3564_01485 0ccb1887bfdbf57461857f52f819c729 318 Gene3D G3DSA:3.60.110.10 1 292 6.9E-112 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AP3564_01485 0ccb1887bfdbf57461857f52f819c729 318 SUPERFAMILY SSF56317 7 308 4.97E-83 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AP3564_01485 0ccb1887bfdbf57461857f52f819c729 318 ProSitePatterns PS00921 Nitrilases / cyanide hydratase active site signature. 169 182 - T 13-10-2018 IPR000132 Nitrilase/cyanide hydratase, conserved site GO:0016810 AP3564_11850 39fd58832db5c82646774245eaa6429b 261 Gene3D G3DSA:3.40.50.720 1 260 6.5E-74 T 13-10-2018 AP3564_11850 39fd58832db5c82646774245eaa6429b 261 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 257 1.1E-56 T 13-10-2018 AP3564_11850 39fd58832db5c82646774245eaa6429b 261 SUPERFAMILY SSF51735 6 257 5.87E-79 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_11850 39fd58832db5c82646774245eaa6429b 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 1.4E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_11850 39fd58832db5c82646774245eaa6429b 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 1.4E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_11850 39fd58832db5c82646774245eaa6429b 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 1.4E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_11850 39fd58832db5c82646774245eaa6429b 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 7.7E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_11850 39fd58832db5c82646774245eaa6429b 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 7.7E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_11850 39fd58832db5c82646774245eaa6429b 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 7.7E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_11850 39fd58832db5c82646774245eaa6429b 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 221 241 7.7E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_11850 39fd58832db5c82646774245eaa6429b 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 7.7E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_11850 39fd58832db5c82646774245eaa6429b 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 7.7E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_07520 41621ccedd4a08abf1d8ca6ef0a9e8a2 349 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 51 334 4.2E-96 T 13-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 AP3564_07520 41621ccedd4a08abf1d8ca6ef0a9e8a2 349 PIRSF PIRSF006470 22 349 4.6E-120 T 13-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 AP3564_07520 41621ccedd4a08abf1d8ca6ef0a9e8a2 349 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 51 305 1.8E-90 T 13-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 AP3564_07520 41621ccedd4a08abf1d8ca6ef0a9e8a2 349 Gene3D G3DSA:3.40.190.170 46 347 4.8E-99 T 13-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily AP3564_17115 8f98e63c659299d7e5f873be7946161a 421 Gene3D G3DSA:1.25.40.10 114 200 9.6E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AP3564_17115 8f98e63c659299d7e5f873be7946161a 421 SMART SM00028 67 100 350.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AP3564_17115 8f98e63c659299d7e5f873be7946161a 421 SMART SM00028 237 270 18.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AP3564_17115 8f98e63c659299d7e5f873be7946161a 421 SMART SM00028 171 204 0.069 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AP3564_17115 8f98e63c659299d7e5f873be7946161a 421 SMART SM00028 374 407 0.52 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AP3564_17115 8f98e63c659299d7e5f873be7946161a 421 SMART SM00028 305 338 470.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AP3564_17115 8f98e63c659299d7e5f873be7946161a 421 SMART SM00028 271 304 13.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AP3564_17115 8f98e63c659299d7e5f873be7946161a 421 SMART SM00028 101 134 110.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AP3564_17115 8f98e63c659299d7e5f873be7946161a 421 SMART SM00028 340 373 8.2 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AP3564_17115 8f98e63c659299d7e5f873be7946161a 421 SMART SM00028 33 66 65.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AP3564_17115 8f98e63c659299d7e5f873be7946161a 421 SMART SM00028 139 168 150.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AP3564_17115 8f98e63c659299d7e5f873be7946161a 421 Gene3D G3DSA:1.25.40.10 32 106 2.3E-14 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AP3564_17115 8f98e63c659299d7e5f873be7946161a 421 Pfam PF14559 Tetratricopeptide repeat 47 110 2.1E-10 T 13-10-2018 AP3564_17115 8f98e63c659299d7e5f873be7946161a 421 Pfam PF13429 Tetratricopeptide repeat 191 401 7.1E-13 T 13-10-2018 AP3564_17115 8f98e63c659299d7e5f873be7946161a 421 Gene3D G3DSA:1.25.40.10 201 419 1.2E-38 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AP3564_17115 8f98e63c659299d7e5f873be7946161a 421 SUPERFAMILY SSF48452 39 410 6.26E-37 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AP3564_17115 8f98e63c659299d7e5f873be7946161a 421 Pfam PF13176 Tetratricopeptide repeat 140 165 0.0084 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AP3564_17310 555200294b1d2b21ba0e3ae9743db6b6 322 PIRSF PIRSF001220 1 322 2.5E-97 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AP3564_17310 555200294b1d2b21ba0e3ae9743db6b6 322 Gene3D G3DSA:3.40.50.1170 1 206 4.1E-66 T 13-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 AP3564_17310 555200294b1d2b21ba0e3ae9743db6b6 322 PRINTS PR00139 Asparaginase/glutaminase family signature 252 270 4.4E-17 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AP3564_17310 555200294b1d2b21ba0e3ae9743db6b6 322 PRINTS PR00139 Asparaginase/glutaminase family signature 79 97 4.4E-17 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AP3564_17310 555200294b1d2b21ba0e3ae9743db6b6 322 PRINTS PR00139 Asparaginase/glutaminase family signature 4 15 4.4E-17 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AP3564_17310 555200294b1d2b21ba0e3ae9743db6b6 322 SUPERFAMILY SSF53774 1 321 3.79E-101 T 13-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 AP3564_17310 555200294b1d2b21ba0e3ae9743db6b6 322 Pfam PF00710 Asparaginase, N-terminal 3 184 3.2E-57 T 13-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 AP3564_17310 555200294b1d2b21ba0e3ae9743db6b6 322 PIRSF PIRSF500176 1 322 2.5E-95 T 13-10-2018 AP3564_17310 555200294b1d2b21ba0e3ae9743db6b6 322 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 6 14 - T 13-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 AP3564_17310 555200294b1d2b21ba0e3ae9743db6b6 322 Gene3D G3DSA:3.40.50.40 207 321 3.1E-30 T 13-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 AP3564_17310 555200294b1d2b21ba0e3ae9743db6b6 322 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 80 90 - T 13-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 AP3564_17310 555200294b1d2b21ba0e3ae9743db6b6 322 SMART SM00870 3 317 2.7E-141 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AP3564_03585 48890f233447e8f697707c7bfdf047b5 189 SUPERFAMILY SSF52540 8 187 4.01E-13 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_03585 48890f233447e8f697707c7bfdf047b5 189 Pfam PF13401 AAA domain 40 112 1.6E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_01855 af2dfe3f9c18f604db57d1bed90a99cb 385 PRINTS PR00723 Subtilisin serine protease family (S8) signature 131 150 4.7E-17 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related AP3564_01855 af2dfe3f9c18f604db57d1bed90a99cb 385 PRINTS PR00723 Subtilisin serine protease family (S8) signature 166 179 4.7E-17 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related AP3564_01855 af2dfe3f9c18f604db57d1bed90a99cb 385 PRINTS PR00723 Subtilisin serine protease family (S8) signature 324 340 4.7E-17 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related AP3564_01855 af2dfe3f9c18f604db57d1bed90a99cb 385 Gene3D G3DSA:3.40.50.200 93 383 4.7E-91 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 AP3564_01855 af2dfe3f9c18f604db57d1bed90a99cb 385 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 136 146 - T 13-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site AP3564_01855 af2dfe3f9c18f604db57d1bed90a99cb 385 Pfam PF00082 Subtilase family 131 365 3.0E-52 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AP3564_01855 af2dfe3f9c18f604db57d1bed90a99cb 385 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 325 335 - T 13-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site AP3564_01855 af2dfe3f9c18f604db57d1bed90a99cb 385 Gene3D G3DSA:3.30.70.80 25 92 4.0E-9 T 13-10-2018 IPR037045 Peptidase S8 propeptide/proteinase inhibitor I9 superfamily Reactome: R-HSA-381426|Reactome: R-HSA-8866427|Reactome: R-HSA-8957275|Reactome: R-HSA-8964038 AP3564_01855 af2dfe3f9c18f604db57d1bed90a99cb 385 SUPERFAMILY SSF52743 111 382 3.67E-87 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 AP3564_01855 af2dfe3f9c18f604db57d1bed90a99cb 385 SUPERFAMILY SSF54897 31 92 6.8E-6 T 13-10-2018 AP3564_01855 af2dfe3f9c18f604db57d1bed90a99cb 385 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 170 180 - T 13-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site AP3564_16475 adf39d39b837fd2d78c588c55b33e0e1 890 Pfam PF00689 Cation transporting ATPase, C-terminus 714 879 3.4E-50 T 13-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 AP3564_16475 adf39d39b837fd2d78c588c55b33e0e1 890 SUPERFAMILY SSF81653 114 223 7.06E-31 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 AP3564_16475 adf39d39b837fd2d78c588c55b33e0e1 890 Pfam PF00122 E1-E2 ATPase 111 304 1.7E-55 T 13-10-2018 AP3564_16475 adf39d39b837fd2d78c588c55b33e0e1 890 SUPERFAMILY SSF81665 1 879 5.49E-135 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 AP3564_16475 adf39d39b837fd2d78c588c55b33e0e1 890 SUPERFAMILY SSF81660 332 532 6.76E-56 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AP3564_16475 adf39d39b837fd2d78c588c55b33e0e1 890 Gene3D G3DSA:2.70.150.10 15 227 0.0 T 13-10-2018 AP3564_16475 adf39d39b837fd2d78c588c55b33e0e1 890 Gene3D G3DSA:3.40.1110.10 334 535 0.0 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AP3564_16475 adf39d39b837fd2d78c588c55b33e0e1 890 TIGRFAM TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type 54 880 5.7E-216 T 13-10-2018 IPR005782 P-type ATPase, subfamily IIA, SERCA-type GO:0005388|GO:0006816|GO:0016021 Reactome: R-HSA-1912420|Reactome: R-HSA-418359|Reactome: R-HSA-5578775|Reactome: R-HSA-936837 AP3564_16475 adf39d39b837fd2d78c588c55b33e0e1 890 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 597 720 4.3E-37 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AP3564_16475 adf39d39b837fd2d78c588c55b33e0e1 890 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 208 346 2.1E-27 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AP3564_16475 adf39d39b837fd2d78c588c55b33e0e1 890 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 83 185 5.5E-20 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AP3564_16475 adf39d39b837fd2d78c588c55b33e0e1 890 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 421 574 3.8E-20 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AP3564_16475 adf39d39b837fd2d78c588c55b33e0e1 890 SMART SM00831 2 76 3.1E-25 T 13-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 AP3564_16475 adf39d39b837fd2d78c588c55b33e0e1 890 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 630 649 1.0E-40 T 13-10-2018 AP3564_16475 adf39d39b837fd2d78c588c55b33e0e1 890 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 324 338 1.0E-40 T 13-10-2018 AP3564_16475 adf39d39b837fd2d78c588c55b33e0e1 890 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 161 175 1.0E-40 T 13-10-2018 AP3564_16475 adf39d39b837fd2d78c588c55b33e0e1 890 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 528 539 1.0E-40 T 13-10-2018 AP3564_16475 adf39d39b837fd2d78c588c55b33e0e1 890 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 550 560 1.0E-40 T 13-10-2018 AP3564_16475 adf39d39b837fd2d78c588c55b33e0e1 890 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 654 666 1.0E-40 T 13-10-2018 AP3564_16475 adf39d39b837fd2d78c588c55b33e0e1 890 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 801 822 1.6E-17 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AP3564_16475 adf39d39b837fd2d78c588c55b33e0e1 890 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 488 506 1.6E-17 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AP3564_16475 adf39d39b837fd2d78c588c55b33e0e1 890 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 662 687 1.6E-17 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AP3564_16475 adf39d39b837fd2d78c588c55b33e0e1 890 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 602 618 1.6E-17 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AP3564_16475 adf39d39b837fd2d78c588c55b33e0e1 890 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 630 646 1.6E-17 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AP3564_16475 adf39d39b837fd2d78c588c55b33e0e1 890 Gene3D G3DSA:1.20.1110.10 54 875 0.0 T 13-10-2018 AP3564_16475 adf39d39b837fd2d78c588c55b33e0e1 890 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 326 332 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 AP3564_16475 adf39d39b837fd2d78c588c55b33e0e1 890 Gene3D G3DSA:3.40.50.1000 321 675 0.0 T 13-10-2018 IPR023214 HAD superfamily AP3564_16475 adf39d39b837fd2d78c588c55b33e0e1 890 Pfam PF00690 Cation transporter/ATPase, N-terminus 3 71 3.9E-19 T 13-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 AP3564_16475 adf39d39b837fd2d78c588c55b33e0e1 890 Pfam PF00702 haloacid dehalogenase-like hydrolase 322 644 1.1E-26 T 13-10-2018 AP3564_16475 adf39d39b837fd2d78c588c55b33e0e1 890 SUPERFAMILY SSF56784 322 734 1.1E-63 T 13-10-2018 IPR036412 HAD-like superfamily AP3564_15000 acdc2eed4ce2268867ea5f5b7a25ad32 325 Gene3D G3DSA:3.40.50.1980 171 325 1.3E-41 T 13-10-2018 AP3564_15000 acdc2eed4ce2268867ea5f5b7a25ad32 325 Gene3D G3DSA:3.40.50.1980 34 170 2.0E-28 T 13-10-2018 AP3564_15000 acdc2eed4ce2268867ea5f5b7a25ad32 325 Pfam PF01497 Periplasmic binding protein 78 297 2.7E-26 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain AP3564_15000 acdc2eed4ce2268867ea5f5b7a25ad32 325 SUPERFAMILY SSF53807 48 318 1.22E-54 T 13-10-2018 AP3564_14355 be2df614c96e81f9d7c27454c439f659 353 PIRSF PIRSF005508 1 352 7.3E-142 T 13-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 AP3564_14355 be2df614c96e81f9d7c27454c439f659 353 Pfam PF01758 Sodium Bile acid symporter family 54 250 1.0E-67 T 13-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 AP3564_14355 be2df614c96e81f9d7c27454c439f659 353 TIGRFAM TIGR00832 acr3: arsenical-resistance protein 9 338 3.0E-142 T 13-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 AP3564_14355 be2df614c96e81f9d7c27454c439f659 353 Gene3D G3DSA:1.20.1530.20 2 344 2.0E-28 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily AP3564_17275 759e4a2121bab04a1a98fba9ede8f96e 381 PRINTS PR00681 Ribosomal protein S1 signature 122 139 1.7E-54 T 13-10-2018 AP3564_17275 759e4a2121bab04a1a98fba9ede8f96e 381 PRINTS PR00681 Ribosomal protein S1 signature 286 305 1.7E-54 T 13-10-2018 AP3564_17275 759e4a2121bab04a1a98fba9ede8f96e 381 PRINTS PR00681 Ribosomal protein S1 signature 81 100 1.7E-54 T 13-10-2018 AP3564_17275 759e4a2121bab04a1a98fba9ede8f96e 381 PRINTS PR00681 Ribosomal protein S1 signature 16 34 1.7E-54 T 13-10-2018 AP3564_17275 759e4a2121bab04a1a98fba9ede8f96e 381 PRINTS PR00681 Ribosomal protein S1 signature 105 121 1.7E-54 T 13-10-2018 AP3564_17275 759e4a2121bab04a1a98fba9ede8f96e 381 PRINTS PR00681 Ribosomal protein S1 signature 208 229 1.7E-54 T 13-10-2018 AP3564_17275 759e4a2121bab04a1a98fba9ede8f96e 381 PRINTS PR00681 Ribosomal protein S1 signature 325 343 1.7E-54 T 13-10-2018 AP3564_17275 759e4a2121bab04a1a98fba9ede8f96e 381 PRINTS PR00681 Ribosomal protein S1 signature 151 171 1.7E-54 T 13-10-2018 AP3564_17275 759e4a2121bab04a1a98fba9ede8f96e 381 SMART SM00316 100 167 4.4E-10 T 13-10-2018 IPR022967 RNA-binding domain, S1 AP3564_17275 759e4a2121bab04a1a98fba9ede8f96e 381 SMART SM00316 271 342 7.7E-26 T 13-10-2018 IPR022967 RNA-binding domain, S1 AP3564_17275 759e4a2121bab04a1a98fba9ede8f96e 381 SMART SM00316 14 84 3.2E-15 T 13-10-2018 IPR022967 RNA-binding domain, S1 AP3564_17275 759e4a2121bab04a1a98fba9ede8f96e 381 SMART SM00316 186 256 3.1E-29 T 13-10-2018 IPR022967 RNA-binding domain, S1 AP3564_17275 759e4a2121bab04a1a98fba9ede8f96e 381 SUPERFAMILY SSF50249 14 109 3.5E-18 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_17275 759e4a2121bab04a1a98fba9ede8f96e 381 Gene3D G3DSA:2.40.50.140 183 262 3.4E-29 T 13-10-2018 AP3564_17275 759e4a2121bab04a1a98fba9ede8f96e 381 Gene3D G3DSA:2.40.50.140 95 181 3.0E-11 T 13-10-2018 AP3564_17275 759e4a2121bab04a1a98fba9ede8f96e 381 SUPERFAMILY SSF50249 186 270 1.91E-27 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_17275 759e4a2121bab04a1a98fba9ede8f96e 381 SUPERFAMILY SSF50249 256 345 2.5E-25 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_17275 759e4a2121bab04a1a98fba9ede8f96e 381 Pfam PF00575 S1 RNA binding domain 13 82 4.6E-13 T 13-10-2018 IPR003029 S1 domain GO:0003676 AP3564_17275 759e4a2121bab04a1a98fba9ede8f96e 381 Pfam PF00575 S1 RNA binding domain 270 342 7.6E-23 T 13-10-2018 IPR003029 S1 domain GO:0003676 AP3564_17275 759e4a2121bab04a1a98fba9ede8f96e 381 Pfam PF00575 S1 RNA binding domain 186 256 1.0E-25 T 13-10-2018 IPR003029 S1 domain GO:0003676 AP3564_17275 759e4a2121bab04a1a98fba9ede8f96e 381 Pfam PF00575 S1 RNA binding domain 98 167 4.6E-14 T 13-10-2018 IPR003029 S1 domain GO:0003676 AP3564_17275 759e4a2121bab04a1a98fba9ede8f96e 381 SUPERFAMILY SSF50249 86 170 9.29E-16 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_17275 759e4a2121bab04a1a98fba9ede8f96e 381 Gene3D G3DSA:2.40.50.140 5 94 1.1E-15 T 13-10-2018 AP3564_17275 759e4a2121bab04a1a98fba9ede8f96e 381 Gene3D G3DSA:2.40.50.140 263 347 1.7E-29 T 13-10-2018 AP3564_15325 198fb0753657c6cf0f2fd934af91be55 427 Pfam PF01548 Transposase 19 179 1.8E-34 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_15325 198fb0753657c6cf0f2fd934af91be55 427 Pfam PF02371 Transposase IS116/IS110/IS902 family 287 371 1.6E-22 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_00780 198fb0753657c6cf0f2fd934af91be55 427 Pfam PF01548 Transposase 19 179 1.8E-34 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_00780 198fb0753657c6cf0f2fd934af91be55 427 Pfam PF02371 Transposase IS116/IS110/IS902 family 287 371 1.6E-22 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_14110 e29fc364f67cee4298c5e58191b3de80 118 Gene3D G3DSA:1.20.5.340 2 101 1.4E-13 T 13-10-2018 AP3564_14110 e29fc364f67cee4298c5e58191b3de80 118 Pfam PF11727 Invariant surface glycoprotein 11 95 5.5E-6 T 13-10-2018 IPR021057 Trypanosome invariant surface glycoprotein AP3564_14110 e29fc364f67cee4298c5e58191b3de80 118 SUPERFAMILY SSF57997 2 110 3.76E-13 T 13-10-2018 AP3564_01350 7414152ed47597ee5e7514e5a64d712f 317 SUPERFAMILY SSF81345 5 312 1.31E-69 T 13-10-2018 IPR037294 ABC transporter, BtuC-like AP3564_01350 7414152ed47597ee5e7514e5a64d712f 317 Pfam PF01032 FecCD transport family 10 311 1.4E-67 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 AP3564_01350 7414152ed47597ee5e7514e5a64d712f 317 Gene3D G3DSA:1.10.3470.10 2 313 2.5E-64 T 13-10-2018 IPR037294 ABC transporter, BtuC-like AP3564_18685 a99068b50ce9fec37c3f9add1381bb72 139 SUPERFAMILY SSF46785 2 126 2.02E-33 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_18685 a99068b50ce9fec37c3f9add1381bb72 139 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 2 124 1.3E-34 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type AP3564_18685 a99068b50ce9fec37c3f9add1381bb72 139 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 13-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site AP3564_18685 a99068b50ce9fec37c3f9add1381bb72 139 Gene3D G3DSA:1.10.10.10 1 139 2.1E-52 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_18685 a99068b50ce9fec37c3f9add1381bb72 139 Pfam PF02082 Transcriptional regulator 2 82 3.6E-27 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type AP3564_16505 700d223909750f7cde83530b6836bc54 198 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 24 196 39.943 T 13-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 AP3564_16505 700d223909750f7cde83530b6836bc54 198 Pfam PF01583 Adenylylsulphate kinase 26 178 2.5E-75 T 13-10-2018 AP3564_16505 700d223909750f7cde83530b6836bc54 198 Gene3D G3DSA:3.40.50.300 2 198 4.0E-87 T 13-10-2018 AP3564_16505 700d223909750f7cde83530b6836bc54 198 SUPERFAMILY SSF52540 23 194 1.02E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_16505 700d223909750f7cde83530b6836bc54 198 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 8 192 6.7E-90 T 13-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 AP3564_13015 52247904ca3e7f624c5eed9fc008bcf0 360 SUPERFAMILY SSF54001 247 359 1.96E-32 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily AP3564_13015 52247904ca3e7f624c5eed9fc008bcf0 360 Pfam PF01476 LysM domain 98 139 6.3E-17 T 13-10-2018 IPR018392 LysM domain AP3564_13015 52247904ca3e7f624c5eed9fc008bcf0 360 Pfam PF01476 LysM domain 29 70 7.5E-15 T 13-10-2018 IPR018392 LysM domain AP3564_13015 52247904ca3e7f624c5eed9fc008bcf0 360 Pfam PF01476 LysM domain 176 217 1.2E-17 T 13-10-2018 IPR018392 LysM domain AP3564_13015 52247904ca3e7f624c5eed9fc008bcf0 360 SMART SM00257 27 70 8.4E-16 T 13-10-2018 IPR018392 LysM domain AP3564_13015 52247904ca3e7f624c5eed9fc008bcf0 360 SMART SM00257 175 218 8.5E-20 T 13-10-2018 IPR018392 LysM domain AP3564_13015 52247904ca3e7f624c5eed9fc008bcf0 360 SMART SM00257 97 140 2.0E-19 T 13-10-2018 IPR018392 LysM domain AP3564_13015 52247904ca3e7f624c5eed9fc008bcf0 360 SUPERFAMILY SSF54106 96 140 6.41E-13 T 13-10-2018 AP3564_13015 52247904ca3e7f624c5eed9fc008bcf0 360 Gene3D G3DSA:3.10.350.10 171 226 9.8E-21 T 13-10-2018 IPR036779 LysM domain superfamily AP3564_13015 52247904ca3e7f624c5eed9fc008bcf0 360 Gene3D G3DSA:3.10.350.10 95 140 3.6E-21 T 13-10-2018 IPR036779 LysM domain superfamily AP3564_13015 52247904ca3e7f624c5eed9fc008bcf0 360 SUPERFAMILY SSF54106 174 218 5.89E-13 T 13-10-2018 AP3564_13015 52247904ca3e7f624c5eed9fc008bcf0 360 Gene3D G3DSA:3.10.350.10 21 83 5.4E-18 T 13-10-2018 IPR036779 LysM domain superfamily AP3564_13015 52247904ca3e7f624c5eed9fc008bcf0 360 Gene3D G3DSA:3.90.1720.10 234 360 1.4E-33 T 13-10-2018 AP3564_13015 52247904ca3e7f624c5eed9fc008bcf0 360 Pfam PF00877 NlpC/P60 family 257 357 1.7E-28 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain AP3564_13015 52247904ca3e7f624c5eed9fc008bcf0 360 SUPERFAMILY SSF54106 29 70 6.15E-11 T 13-10-2018 AP3564_01225 435a4f5271bdc92276ad2b561306f0e2 166 Pfam PF02080 TrkA-C domain 90 158 2.1E-17 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AP3564_01225 435a4f5271bdc92276ad2b561306f0e2 166 SUPERFAMILY SSF116726 78 158 1.57E-20 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 AP3564_01225 435a4f5271bdc92276ad2b561306f0e2 166 PIRSF PIRSF005028 1 163 2.4E-56 T 13-10-2018 IPR026278 Potassium/proton antiporter subunit KhtT AP3564_01225 435a4f5271bdc92276ad2b561306f0e2 166 Gene3D G3DSA:3.30.70.1450 85 163 9.6E-23 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 AP3564_04950 12fdb5c1e9e643bf1117489a8e96183b 294 Gene3D G3DSA:3.20.20.70 2 294 7.0E-150 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_04950 12fdb5c1e9e643bf1117489a8e96183b 294 ProSitePatterns PS01235 PdxS/SNZ family signature. 205 223 - T 13-10-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 AP3564_04950 12fdb5c1e9e643bf1117489a8e96183b 294 TIGRFAM TIGR00343 TIGR00343: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 9 294 1.8E-160 T 13-10-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 AP3564_04950 12fdb5c1e9e643bf1117489a8e96183b 294 PIRSF PIRSF029271 1 294 2.6E-155 T 13-10-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 AP3564_04950 12fdb5c1e9e643bf1117489a8e96183b 294 Pfam PF01680 SOR/SNZ family 8 212 3.9E-108 T 13-10-2018 IPR033755 PdxS/SNZ N-terminal domain KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 AP3564_04950 12fdb5c1e9e643bf1117489a8e96183b 294 Hamap MF_01824 Pyridoxal 5'-phosphate synthase subunit PdxS [pdxS]. 4 294 54.733 T 13-10-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 AP3564_04950 12fdb5c1e9e643bf1117489a8e96183b 294 SUPERFAMILY SSF51366 18 268 4.71E-71 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AP3564_02730 e2eb19c81d052ae5018ce2e580a4ee32 179 Gene3D G3DSA:3.40.50.360 2 179 3.3E-44 T 13-10-2018 IPR029039 Flavoprotein-like superfamily AP3564_02730 e2eb19c81d052ae5018ce2e580a4ee32 179 SUPERFAMILY SSF52218 3 170 9.32E-32 T 13-10-2018 IPR029039 Flavoprotein-like superfamily AP3564_02730 e2eb19c81d052ae5018ce2e580a4ee32 179 Pfam PF03358 NADPH-dependent FMN reductase 3 144 2.2E-30 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AP3564_02730 e2eb19c81d052ae5018ce2e580a4ee32 179 TIGRFAM TIGR03567 FMN_reduc_SsuE: FMN reductase 3 172 3.4E-66 T 13-10-2018 IPR020048 NADPH-dependent FMN reductase, SsuE GO:0008752|GO:0046306|GO:0055114 KEGG: 00740+1.5.1.38|MetaCyc: PWY-7723 AP3564_11865 a9717c2f89d5eb743112131045648daf 691 Gene3D G3DSA:3.90.1310.30 69 563 4.7E-209 T 13-10-2018 AP3564_11865 a9717c2f89d5eb743112131045648daf 691 SUPERFAMILY SSF56601 316 674 6.41E-67 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AP3564_11865 a9717c2f89d5eb743112131045648daf 691 Gene3D G3DSA:1.10.10.1230 94 192 4.7E-209 T 13-10-2018 AP3564_11865 a9717c2f89d5eb743112131045648daf 691 Pfam PF00905 Penicillin binding protein transpeptidase domain 348 668 4.2E-68 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AP3564_11865 a9717c2f89d5eb743112131045648daf 691 Pfam PF03717 Penicillin-binding Protein dimerisation domain 67 301 3.7E-37 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AP3564_11865 a9717c2f89d5eb743112131045648daf 691 Gene3D G3DSA:3.40.710.10 316 663 4.7E-209 T 13-10-2018 AP3564_11865 a9717c2f89d5eb743112131045648daf 691 SUPERFAMILY SSF56519 63 315 6.02E-37 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 AP3564_10160 0da791450de74d971941c1420b6411e6 294 Gene3D G3DSA:1.10.472.60 66 190 3.3E-36 T 13-10-2018 AP3564_10160 0da791450de74d971941c1420b6411e6 294 SUPERFAMILY SSF52833 24 229 2.69E-29 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AP3564_10160 0da791450de74d971941c1420b6411e6 294 Pfam PF13743 Thioredoxin 29 220 1.7E-74 T 13-10-2018 AP3564_10160 0da791450de74d971941c1420b6411e6 294 Gene3D G3DSA:3.40.30.10 31 219 3.3E-36 T 13-10-2018 AP3564_06855 d1ed7f4ebbd8c0084b30b08554ac2c55 718 Gene3D G3DSA:3.30.420.140 319 445 8.2E-161 T 13-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 AP3564_06855 d1ed7f4ebbd8c0084b30b08554ac2c55 718 SUPERFAMILY SSF47781 554 629 2.45E-15 T 13-10-2018 IPR010994 RuvA domain 2-like AP3564_06855 d1ed7f4ebbd8c0084b30b08554ac2c55 718 SUPERFAMILY SSF158832 4 315 1.57E-118 T 13-10-2018 AP3564_06855 d1ed7f4ebbd8c0084b30b08554ac2c55 718 Pfam PF16921 Tex protein YqgF-like domain 321 445 1.2E-57 T 13-10-2018 IPR032639 Tex protein, YqgF-like domain AP3564_06855 d1ed7f4ebbd8c0084b30b08554ac2c55 718 Gene3D G3DSA:2.40.50.140 631 718 5.6E-25 T 13-10-2018 AP3564_06855 d1ed7f4ebbd8c0084b30b08554ac2c55 718 Pfam PF12836 Helix-hairpin-helix motif 485 549 7.4E-26 T 13-10-2018 AP3564_06855 d1ed7f4ebbd8c0084b30b08554ac2c55 718 SUPERFAMILY SSF53098 316 463 4.17E-52 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_06855 d1ed7f4ebbd8c0084b30b08554ac2c55 718 Pfam PF09371 Tex-like protein N-terminal domain 11 195 5.8E-73 T 13-10-2018 IPR018974 Tex-like protein, N-terminal AP3564_06855 d1ed7f4ebbd8c0084b30b08554ac2c55 718 SMART SM00316 646 717 1.1E-22 T 13-10-2018 IPR022967 RNA-binding domain, S1 AP3564_06855 d1ed7f4ebbd8c0084b30b08554ac2c55 718 SUPERFAMILY SSF50249 632 716 3.58E-23 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_06855 d1ed7f4ebbd8c0084b30b08554ac2c55 718 Gene3D G3DSA:1.10.150.310 493 627 2.1E-45 T 13-10-2018 AP3564_06855 d1ed7f4ebbd8c0084b30b08554ac2c55 718 SUPERFAMILY SSF47781 464 550 1.89E-26 T 13-10-2018 IPR010994 RuvA domain 2-like AP3564_06855 d1ed7f4ebbd8c0084b30b08554ac2c55 718 Gene3D G3DSA:1.10.3500.10 114 492 8.2E-161 T 13-10-2018 IPR023323 Tex-like domain superfamily AP3564_06855 d1ed7f4ebbd8c0084b30b08554ac2c55 718 Pfam PF00575 S1 RNA binding domain 645 716 5.8E-17 T 13-10-2018 IPR003029 S1 domain GO:0003676 AP3564_06855 d1ed7f4ebbd8c0084b30b08554ac2c55 718 Gene3D G3DSA:1.10.10.650 3 111 2.1E-38 T 13-10-2018 IPR023319 Tex-like protein, HTH domain superfamily AP3564_06855 d1ed7f4ebbd8c0084b30b08554ac2c55 718 SMART SM00732 320 418 4.8E-37 T 13-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 AP3564_17390 c915f5cd275dac719e86801e0982d589 588 Gene3D G3DSA:3.30.565.10 434 588 1.5E-44 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_17390 c915f5cd275dac719e86801e0982d589 588 SUPERFAMILY SSF55785 242 356 4.19E-10 T 13-10-2018 IPR035965 PAS domain superfamily AP3564_17390 c915f5cd275dac719e86801e0982d589 588 Pfam PF00512 His Kinase A (phospho-acceptor) domain 367 431 2.8E-20 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AP3564_17390 c915f5cd275dac719e86801e0982d589 588 Gene3D G3DSA:1.10.287.130 360 433 1.4E-25 T 13-10-2018 AP3564_17390 c915f5cd275dac719e86801e0982d589 588 SUPERFAMILY SSF158472 195 242 3.92E-9 T 13-10-2018 AP3564_17390 c915f5cd275dac719e86801e0982d589 588 SUPERFAMILY SSF55874 420 586 7.86E-46 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_17390 c915f5cd275dac719e86801e0982d589 588 SMART SM00388 364 431 2.2E-23 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AP3564_17390 c915f5cd275dac719e86801e0982d589 588 SMART SM00091 253 323 0.0019 T 13-10-2018 IPR000014 PAS domain AP3564_17390 c915f5cd275dac719e86801e0982d589 588 Gene3D G3DSA:1.20.1480.50 155 248 2.3E-19 T 13-10-2018 AP3564_17390 c915f5cd275dac719e86801e0982d589 588 SMART SM00387 477 588 7.1E-40 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_17390 c915f5cd275dac719e86801e0982d589 588 Pfam PF00672 HAMP domain 195 240 8.2E-12 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AP3564_17390 c915f5cd275dac719e86801e0982d589 588 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 478 587 3.2E-26 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_17390 c915f5cd275dac719e86801e0982d589 588 Pfam PF00989 PAS fold 253 355 3.5E-6 T 13-10-2018 IPR013767 PAS fold GO:0006355 AP3564_17390 c915f5cd275dac719e86801e0982d589 588 PRINTS PR00344 Bacterial sensor protein C-terminal signature 513 527 6.5E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_17390 c915f5cd275dac719e86801e0982d589 588 PRINTS PR00344 Bacterial sensor protein C-terminal signature 548 566 6.5E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_17390 c915f5cd275dac719e86801e0982d589 588 PRINTS PR00344 Bacterial sensor protein C-terminal signature 531 541 6.5E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_17390 c915f5cd275dac719e86801e0982d589 588 PRINTS PR00344 Bacterial sensor protein C-terminal signature 572 585 6.5E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_17390 c915f5cd275dac719e86801e0982d589 588 SUPERFAMILY SSF47384 349 432 1.35E-20 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AP3564_17390 c915f5cd275dac719e86801e0982d589 588 Gene3D G3DSA:3.30.450.20 249 359 8.6E-13 T 13-10-2018 AP3564_17390 c915f5cd275dac719e86801e0982d589 588 SMART SM00304 194 246 1.2E-12 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AP3564_17455 ef65deb0cb8f3c9f02620f6df7c26c83 156 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 13 150 1.3E-62 T 13-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AP3564_17455 ef65deb0cb8f3c9f02620f6df7c26c83 156 Gene3D G3DSA:3.40.50.960 1 154 2.5E-67 T 13-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AP3564_17455 ef65deb0cb8f3c9f02620f6df7c26c83 156 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 13 149 7.0E-62 T 13-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AP3564_17455 ef65deb0cb8f3c9f02620f6df7c26c83 156 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 8 153 32.665 T 13-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AP3564_17455 ef65deb0cb8f3c9f02620f6df7c26c83 156 SUPERFAMILY SSF52121 4 153 5.1E-67 T 13-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AP3564_10775 e647968466a46dba3204ba35bcfff009 399 Gene3D G3DSA:3.40.50.300 2 230 1.7E-74 T 13-10-2018 AP3564_10775 e647968466a46dba3204ba35bcfff009 399 SMART SM00833 260 375 2.9E-49 T 13-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AP3564_10775 e647968466a46dba3204ba35bcfff009 399 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 6 211 2.1E-60 T 13-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain AP3564_10775 e647968466a46dba3204ba35bcfff009 399 Gene3D G3DSA:3.30.1220.10 242 375 4.8E-6 T 13-10-2018 IPR036627 CobW-like, C-terminal domain superfamily AP3564_10775 e647968466a46dba3204ba35bcfff009 399 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 260 375 7.6E-27 T 13-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AP3564_10775 e647968466a46dba3204ba35bcfff009 399 SUPERFAMILY SSF52540 3 308 5.52E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_05730 333f20c626784219a022eb31e44be6ce 207 Pfam PF00573 Ribosomal protein L4/L1 family 17 204 3.9E-77 T 13-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 AP3564_05730 333f20c626784219a022eb31e44be6ce 207 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 17 204 1.1E-86 T 13-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05730 333f20c626784219a022eb31e44be6ce 207 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 9 207 38.997 T 13-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05730 333f20c626784219a022eb31e44be6ce 207 Gene3D G3DSA:3.40.1370.10 2 207 4.6E-88 T 13-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 AP3564_05730 333f20c626784219a022eb31e44be6ce 207 SUPERFAMILY SSF52166 1 206 7.33E-89 T 13-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 AP3564_13885 8ccb8e8145dc53f2b6117d14801879d0 75 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 7 31 - T 13-10-2018 IPR001455 TusA-like domain AP3564_13885 8ccb8e8145dc53f2b6117d14801879d0 75 Gene3D G3DSA:3.30.110.40 1 75 6.7E-31 T 13-10-2018 IPR036868 TusA-like domain superfamily AP3564_13885 8ccb8e8145dc53f2b6117d14801879d0 75 Pfam PF01206 Sulfurtransferase TusA 5 74 2.2E-25 T 13-10-2018 IPR001455 TusA-like domain AP3564_13885 8ccb8e8145dc53f2b6117d14801879d0 75 SUPERFAMILY SSF64307 3 75 2.88E-26 T 13-10-2018 IPR036868 TusA-like domain superfamily AP3564_14165 2aed64662e8a04d5aea1c4f71ee714e9 393 Gene3D G3DSA:1.20.1090.10 187 391 4.5E-68 T 13-10-2018 AP3564_14165 2aed64662e8a04d5aea1c4f71ee714e9 393 Gene3D G3DSA:3.40.50.1970 2 185 1.0E-50 T 13-10-2018 AP3564_14165 2aed64662e8a04d5aea1c4f71ee714e9 393 Pfam PF00465 Iron-containing alcohol dehydrogenase 13 377 1.6E-117 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 AP3564_14165 2aed64662e8a04d5aea1c4f71ee714e9 393 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 174 202 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AP3564_14165 2aed64662e8a04d5aea1c4f71ee714e9 393 SUPERFAMILY SSF56796 8 387 2.75E-117 T 13-10-2018 AP3564_14985 8990075783e60eb8c5c990f2073f1e86 456 SUPERFAMILY SSF47384 219 300 7.85E-19 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AP3564_14985 8990075783e60eb8c5c990f2073f1e86 456 SUPERFAMILY SSF158472 182 229 1.14E-8 T 13-10-2018 AP3564_14985 8990075783e60eb8c5c990f2073f1e86 456 Gene3D G3DSA:1.10.287.130 240 301 2.7E-16 T 13-10-2018 AP3564_14985 8990075783e60eb8c5c990f2073f1e86 456 Gene3D G3DSA:1.20.1480.50 144 239 6.6E-14 T 13-10-2018 AP3564_14985 8990075783e60eb8c5c990f2073f1e86 456 Gene3D G3DSA:3.30.565.10 304 456 3.1E-49 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_14985 8990075783e60eb8c5c990f2073f1e86 456 SMART SM00304 181 233 7.1E-10 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AP3564_14985 8990075783e60eb8c5c990f2073f1e86 456 Pfam PF00672 HAMP domain 183 228 1.4E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AP3564_14985 8990075783e60eb8c5c990f2073f1e86 456 PRINTS PR00344 Bacterial sensor protein C-terminal signature 382 396 2.0E-21 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_14985 8990075783e60eb8c5c990f2073f1e86 456 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 410 2.0E-21 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_14985 8990075783e60eb8c5c990f2073f1e86 456 PRINTS PR00344 Bacterial sensor protein C-terminal signature 417 435 2.0E-21 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_14985 8990075783e60eb8c5c990f2073f1e86 456 PRINTS PR00344 Bacterial sensor protein C-terminal signature 441 454 2.0E-21 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_14985 8990075783e60eb8c5c990f2073f1e86 456 SMART SM00387 345 456 1.3E-42 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_14985 8990075783e60eb8c5c990f2073f1e86 456 Pfam PF00512 His Kinase A (phospho-acceptor) domain 235 299 3.0E-17 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AP3564_14985 8990075783e60eb8c5c990f2073f1e86 456 SUPERFAMILY SSF55874 290 454 1.96E-50 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_14985 8990075783e60eb8c5c990f2073f1e86 456 SMART SM00388 234 300 4.3E-19 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AP3564_14985 8990075783e60eb8c5c990f2073f1e86 456 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 346 455 8.2E-31 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_08430 f1c35bca9c1abc54c3365265e5e3e273 396 TIGRFAM TIGR00937 2A51: chromate efflux transporter 24 393 2.2E-106 T 13-10-2018 IPR014047 Chromate transporter, long chain AP3564_08430 f1c35bca9c1abc54c3365265e5e3e273 396 PIRSF PIRSF004810 1 396 2.5E-126 T 13-10-2018 IPR014047 Chromate transporter, long chain AP3564_08430 f1c35bca9c1abc54c3365265e5e3e273 396 Pfam PF02417 Chromate transporter 232 393 3.7E-40 T 13-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 AP3564_08430 f1c35bca9c1abc54c3365265e5e3e273 396 Pfam PF02417 Chromate transporter 17 180 2.5E-29 T 13-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 AP3564_18805 728ebf08b21faab4b8b99525db0940d3 246 Pfam PF02540 NAD synthase 5 239 1.8E-70 T 13-10-2018 IPR022310 NAD/GMP synthase AP3564_18805 728ebf08b21faab4b8b99525db0940d3 246 TIGRFAM TIGR00552 nadE: NAD+ synthetase 2 239 2.3E-75 T 13-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 AP3564_18805 728ebf08b21faab4b8b99525db0940d3 246 Gene3D G3DSA:3.40.50.620 1 243 1.4E-79 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AP3564_18805 728ebf08b21faab4b8b99525db0940d3 246 SUPERFAMILY SSF52402 2 245 4.42E-72 T 13-10-2018 AP3564_18805 728ebf08b21faab4b8b99525db0940d3 246 Hamap MF_00193 NH(3)-dependent NAD(+) synthetase [nadE]. 1 243 49.291 T 13-10-2018 IPR022926 NH(3)-dependent NAD(+) synthetase GO:0008795|GO:0009435 KEGG: 00760+6.3.1.5 AP3564_07555 b99fe2d2412aeb4f0edd1cf320a7934e 382 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 29 364 2.8E-118 T 13-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 AP3564_07555 b99fe2d2412aeb4f0edd1cf320a7934e 382 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 4 367 4.2E-165 T 13-10-2018 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 AP3564_07555 b99fe2d2412aeb4f0edd1cf320a7934e 382 Gene3D G3DSA:3.40.50.2000 6 362 2.9E-154 T 13-10-2018 AP3564_07555 b99fe2d2412aeb4f0edd1cf320a7934e 382 SUPERFAMILY SSF53756 3 371 8.52E-137 T 13-10-2018 AP3564_07555 b99fe2d2412aeb4f0edd1cf320a7934e 382 Gene3D G3DSA:3.40.50.2000 191 351 2.9E-154 T 13-10-2018 AP3564_03260 ed15b111bc3e908797de507f0aeb9d4f 358 Pfam PF00793 DAHP synthetase I family 110 348 8.4E-82 T 13-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AP3564_03260 ed15b111bc3e908797de507f0aeb9d4f 358 TIGRFAM TIGR01801 CM_A: chorismate mutase 1 102 3.8E-46 T 13-10-2018 IPR010954 Chorismate mutase, Firmicutes/Deinococcus KEGG: 00400+2.5.1.54+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6164|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AP3564_03260 ed15b111bc3e908797de507f0aeb9d4f 358 Gene3D G3DSA:3.20.20.70 93 357 8.2E-102 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_03260 ed15b111bc3e908797de507f0aeb9d4f 358 Pfam PF01817 Chorismate mutase type II 10 87 1.3E-18 T 13-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AP3564_03260 ed15b111bc3e908797de507f0aeb9d4f 358 SMART SM00830 10 89 3.7E-23 T 13-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AP3564_03260 ed15b111bc3e908797de507f0aeb9d4f 358 Gene3D G3DSA:1.20.59.10 8 92 3.8E-29 T 13-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AP3564_03260 ed15b111bc3e908797de507f0aeb9d4f 358 SUPERFAMILY SSF51569 30 355 3.3E-103 T 13-10-2018 AP3564_03260 ed15b111bc3e908797de507f0aeb9d4f 358 TIGRFAM TIGR01361 DAHP_synth_Bsub: 3-deoxy-7-phosphoheptulonate synthase 95 351 4.2E-120 T 13-10-2018 IPR006268 Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2 GO:0009073|GO:0016832 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 AP3564_01675 53e1fd62ff9a4257725e2d9c4060c344 464 SUPERFAMILY SSF53335 77 459 6.81E-81 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_01675 53e1fd62ff9a4257725e2d9c4060c344 464 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 25 454 1.2E-183 T 13-10-2018 AP3564_01675 53e1fd62ff9a4257725e2d9c4060c344 464 Gene3D G3DSA:2.40.50.140 5 88 8.7E-23 T 13-10-2018 AP3564_01675 53e1fd62ff9a4257725e2d9c4060c344 464 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 393 424 - T 13-10-2018 IPR030390 RNA methyltransferase TrmA, active site AP3564_01675 53e1fd62ff9a4257725e2d9c4060c344 464 SUPERFAMILY SSF50249 7 67 4.06E-15 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_01675 53e1fd62ff9a4257725e2d9c4060c344 464 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 444 454 - T 13-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site AP3564_01675 53e1fd62ff9a4257725e2d9c4060c344 464 Gene3D G3DSA:3.40.50.150 90 456 7.9E-116 T 13-10-2018 AP3564_01675 53e1fd62ff9a4257725e2d9c4060c344 464 Gene3D G3DSA:3.40.1350.30 139 294 7.9E-116 T 13-10-2018 AP3564_01675 53e1fd62ff9a4257725e2d9c4060c344 464 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 98 456 2.3E-19 T 13-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 AP3564_01675 53e1fd62ff9a4257725e2d9c4060c344 464 Pfam PF01938 TRAM domain 13 67 1.9E-11 T 13-10-2018 IPR002792 TRAM domain AP3564_00245 e3cd9ef99c2be027755924363d185e49 531 SUPERFAMILY SSF56317 287 523 1.7E-25 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AP3564_00245 e3cd9ef99c2be027755924363d185e49 531 Pfam PF00795 Carbon-nitrogen hydrolase 8 228 2.3E-43 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 AP3564_00245 e3cd9ef99c2be027755924363d185e49 531 Pfam PF00795 Carbon-nitrogen hydrolase 319 468 2.1E-11 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 AP3564_00245 e3cd9ef99c2be027755924363d185e49 531 SUPERFAMILY SSF56317 6 231 7.98E-67 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AP3564_00245 e3cd9ef99c2be027755924363d185e49 531 Gene3D G3DSA:3.60.110.10 280 526 3.1E-26 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AP3564_00245 e3cd9ef99c2be027755924363d185e49 531 Gene3D G3DSA:3.60.110.10 6 262 3.8E-77 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AP3564_14230 2e2710ce7b20a9db03705ba0968a82a8 306 Gene3D G3DSA:3.40.50.150 17 291 2.7E-62 T 13-10-2018 AP3564_14230 2e2710ce7b20a9db03705ba0968a82a8 306 PIRSF PIRSF018249 4 292 1.2E-79 T 13-10-2018 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted GO:0008168 AP3564_14230 2e2710ce7b20a9db03705ba0968a82a8 306 SUPERFAMILY SSF53335 20 260 2.32E-25 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_14230 2e2710ce7b20a9db03705ba0968a82a8 306 Pfam PF13649 Methyltransferase domain 104 174 1.4E-9 T 13-10-2018 AP3564_18130 6ac352c62bb0d32a30275ac7c3bb39fb 76 Pfam PF06014 Bacterial protein of unknown function (DUF910) 1 59 1.1E-26 T 13-10-2018 IPR009256 Protein of unknown function DUF910 AP3564_18130 6ac352c62bb0d32a30275ac7c3bb39fb 76 Gene3D G3DSA:1.10.287.760 1 71 5.9E-27 T 13-10-2018 IPR023164 YqgQ-like superfamily AP3564_18130 6ac352c62bb0d32a30275ac7c3bb39fb 76 SUPERFAMILY SSF158379 1 60 1.19E-21 T 13-10-2018 IPR023164 YqgQ-like superfamily AP3564_16615 dfd5b1a22b305097e224e8cc7c1eab91 275 SUPERFAMILY SSF64438 19 272 8.79E-77 T 13-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic AP3564_16615 dfd5b1a22b305097e224e8cc7c1eab91 275 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 37 271 9.7E-59 T 13-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase AP3564_16615 dfd5b1a22b305097e224e8cc7c1eab91 275 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 31 269 5.4E-69 T 13-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase AP3564_16615 dfd5b1a22b305097e224e8cc7c1eab91 275 Gene3D G3DSA:3.60.140.10 5 275 3.5E-89 T 13-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily AP3564_12410 ba134920499d108e583435155009d5d0 267 Gene3D G3DSA:3.40.50.150 18 243 2.7E-45 T 13-10-2018 AP3564_12410 ba134920499d108e583435155009d5d0 267 SUPERFAMILY SSF53335 18 252 2.74E-47 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_12410 ba134920499d108e583435155009d5d0 267 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 180 197 2.4E-15 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AP3564_12410 ba134920499d108e583435155009d5d0 267 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 37 51 2.4E-15 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AP3564_12410 ba134920499d108e583435155009d5d0 267 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 222 242 2.4E-15 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AP3564_12410 ba134920499d108e583435155009d5d0 267 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 89 109 2.4E-15 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AP3564_12410 ba134920499d108e583435155009d5d0 267 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 199 217 2.4E-15 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AP3564_12410 ba134920499d108e583435155009d5d0 267 Pfam PF01555 DNA methylase 38 236 2.3E-23 T 13-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 AP3564_16260 1602d3dcf13d6efd7bd909a86e26fdaa 295 Gene3D G3DSA:3.40.50.450 4 294 4.9E-90 T 13-10-2018 AP3564_16260 1602d3dcf13d6efd7bd909a86e26fdaa 295 Pfam PF02481 DNA recombination-mediator protein A 73 278 4.8E-73 T 13-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 AP3564_16260 1602d3dcf13d6efd7bd909a86e26fdaa 295 SUPERFAMILY SSF102405 81 289 3.89E-35 T 13-10-2018 AP3564_16260 1602d3dcf13d6efd7bd909a86e26fdaa 295 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 70 288 5.3E-75 T 13-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 AP3564_04435 a9c762608c36515abd5d26e69c7edc0b 523 Gene3D G3DSA:3.90.780.10 316 522 3.5E-70 T 13-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AP3564_04435 a9c762608c36515abd5d26e69c7edc0b 523 ProSitePatterns PS00786 5'-nucleotidase signature 2. 88 99 - T 13-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AP3564_04435 a9c762608c36515abd5d26e69c7edc0b 523 SUPERFAMILY SSF55816 312 522 4.71E-50 T 13-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AP3564_04435 a9c762608c36515abd5d26e69c7edc0b 523 SUPERFAMILY SSF56300 4 314 1.44E-81 T 13-10-2018 AP3564_04435 a9c762608c36515abd5d26e69c7edc0b 523 Pfam PF00149 Calcineurin-like phosphoesterase 8 240 1.3E-16 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AP3564_04435 a9c762608c36515abd5d26e69c7edc0b 523 Pfam PF02872 5'-nucleotidase, C-terminal domain 320 486 7.0E-32 T 13-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AP3564_04435 a9c762608c36515abd5d26e69c7edc0b 523 PRINTS PR01607 Apyrase family signature 5 23 2.4E-25 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AP3564_04435 a9c762608c36515abd5d26e69c7edc0b 523 PRINTS PR01607 Apyrase family signature 222 245 2.4E-25 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AP3564_04435 a9c762608c36515abd5d26e69c7edc0b 523 PRINTS PR01607 Apyrase family signature 187 204 2.4E-25 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AP3564_04435 a9c762608c36515abd5d26e69c7edc0b 523 PRINTS PR01607 Apyrase family signature 459 478 2.4E-25 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AP3564_04435 a9c762608c36515abd5d26e69c7edc0b 523 PRINTS PR01607 Apyrase family signature 248 268 2.4E-25 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AP3564_04435 a9c762608c36515abd5d26e69c7edc0b 523 PRINTS PR01607 Apyrase family signature 370 393 2.4E-25 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AP3564_04435 a9c762608c36515abd5d26e69c7edc0b 523 Gene3D G3DSA:3.60.21.10 5 314 4.8E-92 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like AP3564_17375 0dc1737a6f38cb862845950e5414e850 370 ProDom PD136539 TRANSCRIPTION SIGMA-X NEGATIVE ACTIVITY RSIX REPRESSOR MEMBRANE EFFECTOR REGULATION REGULATOR 1 362 4.0E-21 T 13-10-2018 AP3564_17375 0dc1737a6f38cb862845950e5414e850 370 Pfam PF10646 Sporulation and spore germination 246 338 2.0E-6 T 13-10-2018 IPR019606 GerMN domain AP3564_09860 cd87b9f36a1e0067be1134632ac3231b 69 ProDom PD027559 GERMINATION SPORE GERPB PROBABLE PB SPORULATION PB-RELATED 1 56 7.0E-15 T 13-10-2018 IPR024255 Spore germination GerPB AP3564_09860 cd87b9f36a1e0067be1134632ac3231b 69 Pfam PF10803 Spore germination GerPB 1 51 3.0E-30 T 13-10-2018 IPR024255 Spore germination GerPB AP3564_08180 9866602334757e9beb9dd4f460c68432 310 SMART SM00382 26 210 2.9E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_08180 9866602334757e9beb9dd4f460c68432 310 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_08180 9866602334757e9beb9dd4f460c68432 310 SUPERFAMILY SSF52540 2 221 3.2E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_08180 9866602334757e9beb9dd4f460c68432 310 Pfam PF00005 ABC transporter 18 160 1.3E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_08180 9866602334757e9beb9dd4f460c68432 310 Gene3D G3DSA:3.40.50.300 1 240 2.0E-69 T 13-10-2018 AP3564_08180 9866602334757e9beb9dd4f460c68432 310 Pfam PF13732 Domain of unknown function (DUF4162) 215 303 1.5E-6 T 13-10-2018 IPR025302 Domain of unknown function DUF4162 AP3564_14350 190a2c9c11842936721b2b0c37636b73 115 SMART SM00418 13 92 1.2E-30 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AP3564_14350 190a2c9c11842936721b2b0c37636b73 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 47 62 1.5E-21 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AP3564_14350 190a2c9c11842936721b2b0c37636b73 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 62 77 1.5E-21 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AP3564_14350 190a2c9c11842936721b2b0c37636b73 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 34 45 1.5E-21 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AP3564_14350 190a2c9c11842936721b2b0c37636b73 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 15 30 1.5E-21 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AP3564_14350 190a2c9c11842936721b2b0c37636b73 115 SUPERFAMILY SSF46785 8 102 6.62E-30 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_14350 190a2c9c11842936721b2b0c37636b73 115 Gene3D G3DSA:1.10.10.10 4 102 4.1E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_14350 190a2c9c11842936721b2b0c37636b73 115 Pfam PF01022 Bacterial regulatory protein, arsR family 20 65 2.3E-19 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AP3564_11685 c7b0b4ed997ae011c58e2b6b79717f03 148 Pfam PF01047 MarR family 38 95 1.1E-16 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_11685 c7b0b4ed997ae011c58e2b6b79717f03 148 PRINTS PR00598 Bacterial regulatory protein MarR family signature 121 141 2.1E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_11685 c7b0b4ed997ae011c58e2b6b79717f03 148 PRINTS PR00598 Bacterial regulatory protein MarR family signature 72 87 2.1E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_11685 c7b0b4ed997ae011c58e2b6b79717f03 148 PRINTS PR00598 Bacterial regulatory protein MarR family signature 91 107 2.1E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_11685 c7b0b4ed997ae011c58e2b6b79717f03 148 Gene3D G3DSA:1.10.10.10 1 145 3.5E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_11685 c7b0b4ed997ae011c58e2b6b79717f03 148 SMART SM00347 31 131 3.2E-24 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_11685 c7b0b4ed997ae011c58e2b6b79717f03 148 SUPERFAMILY SSF46785 11 144 1.32E-33 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_11685 c7b0b4ed997ae011c58e2b6b79717f03 148 ProSitePatterns PS01117 MarR-type HTH domain signature. 70 104 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site AP3564_02630 a9eef2d35a16aead951b4fac8142818b 314 SUPERFAMILY SSF51679 16 310 6.41E-64 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AP3564_02630 a9eef2d35a16aead951b4fac8142818b 314 Pfam PF00296 Luciferase-like monooxygenase 21 236 1.6E-39 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AP3564_02630 a9eef2d35a16aead951b4fac8142818b 314 Gene3D G3DSA:3.20.20.30 1 313 3.2E-107 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AP3564_02630 a9eef2d35a16aead951b4fac8142818b 314 TIGRFAM TIGR03571 lucif_BA3436: luciferase-type oxidoreductase, BA3436 family 9 310 1.4E-125 T 13-10-2018 IPR020020 Luciferase-type oxidoreductase AP3564_10305 e5979ec3e5b4e9e73ab117dc4cdbecb3 144 Pfam PF13673 Acetyltransferase (GNAT) domain 22 140 7.4E-23 T 13-10-2018 IPR000182 GNAT domain AP3564_10305 e5979ec3e5b4e9e73ab117dc4cdbecb3 144 Gene3D G3DSA:3.40.630.30 2 139 9.0E-42 T 13-10-2018 AP3564_10305 e5979ec3e5b4e9e73ab117dc4cdbecb3 144 SUPERFAMILY SSF55729 6 142 2.86E-36 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase AP3564_08455 7876aa8f0d159a2b67332680b0d6e291 295 Pfam PF00480 ROK family 4 286 4.6E-76 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 AP3564_08455 7876aa8f0d159a2b67332680b0d6e291 295 ProSitePatterns PS01125 ROK family signature. 129 154 - T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 AP3564_08455 7876aa8f0d159a2b67332680b0d6e291 295 Gene3D G3DSA:3.30.420.40 1 103 3.7E-33 T 13-10-2018 AP3564_08455 7876aa8f0d159a2b67332680b0d6e291 295 Gene3D G3DSA:3.30.420.40 104 295 4.8E-71 T 13-10-2018 AP3564_08455 7876aa8f0d159a2b67332680b0d6e291 295 SUPERFAMILY SSF53067 1 289 9.34E-52 T 13-10-2018 AP3564_16845 7b405395b81cce28073aa894c41c329b 119 Pfam PF08868 YugN-like family 8 93 6.0E-16 T 13-10-2018 IPR014967 Uncharacterised protein family, YugN-like AP3564_16845 7b405395b81cce28073aa894c41c329b 119 SUPERFAMILY SSF160755 1 114 5.89E-39 T 13-10-2018 IPR036491 YugN-like superfamily AP3564_16845 7b405395b81cce28073aa894c41c329b 119 Gene3D G3DSA:3.30.310.100 1 119 6.2E-45 T 13-10-2018 IPR036491 YugN-like superfamily AP3564_16605 527d50bea74e096a6b94af6f2ce4d1ca 153 Pfam PF04472 Cell division protein SepF 66 137 4.7E-31 T 13-10-2018 IPR007561 Cell division protein SepF/SepF-related GO:0090529 AP3564_16605 527d50bea74e096a6b94af6f2ce4d1ca 153 Hamap MF_01197 Cell division protein SepF [sepF]. 1 145 20.612 T 13-10-2018 IPR023052 Cell division protein SepF GO:0090529 AP3564_16605 527d50bea74e096a6b94af6f2ce4d1ca 153 Gene3D G3DSA:3.30.110.150 59 153 1.2E-34 T 13-10-2018 IPR038594 SepF-like superfamily AP3564_01135 13b0d91fa92162b6d76be927aae8718d 110 Gene3D G3DSA:3.30.70.100 1 101 4.9E-32 T 13-10-2018 AP3564_01135 13b0d91fa92162b6d76be927aae8718d 110 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 77 3.7E-17 T 13-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain AP3564_01135 13b0d91fa92162b6d76be927aae8718d 110 SUPERFAMILY SSF54909 1 99 2.72E-24 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel AP3564_18135 3d24e14605ee2be72391be6af1cc451a 509 SUPERFAMILY SSF144091 179 360 1.28E-44 T 13-10-2018 AP3564_18135 3d24e14605ee2be72391be6af1cc451a 509 SUPERFAMILY SSF48452 394 506 2.37E-18 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AP3564_18135 3d24e14605ee2be72391be6af1cc451a 509 Pfam PF01694 Rhomboid family 222 357 1.4E-36 T 13-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 AP3564_18135 3d24e14605ee2be72391be6af1cc451a 509 Gene3D G3DSA:1.25.40.10 367 508 1.9E-17 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AP3564_18135 3d24e14605ee2be72391be6af1cc451a 509 Pfam PF14559 Tetratricopeptide repeat 444 506 9.1E-6 T 13-10-2018 AP3564_18135 3d24e14605ee2be72391be6af1cc451a 509 SMART SM00028 395 428 110.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AP3564_18135 3d24e14605ee2be72391be6af1cc451a 509 SMART SM00028 429 462 0.26 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AP3564_18135 3d24e14605ee2be72391be6af1cc451a 509 SMART SM00028 463 496 0.29 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AP3564_18135 3d24e14605ee2be72391be6af1cc451a 509 Gene3D G3DSA:1.20.1540.10 176 366 1.4E-49 T 13-10-2018 IPR035952 Rhomboid-like superfamily AP3564_00895 a43cf0339a4d6ddc1e1e3e673879639e 538 SUPERFAMILY SSF53335 80 503 6.49E-38 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_00895 a43cf0339a4d6ddc1e1e3e673879639e 538 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 270 284 2.2E-8 T 13-10-2018 AP3564_00895 a43cf0339a4d6ddc1e1e3e673879639e 538 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 494 506 2.2E-8 T 13-10-2018 AP3564_00895 a43cf0339a4d6ddc1e1e3e673879639e 538 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 231 247 2.2E-8 T 13-10-2018 AP3564_00895 a43cf0339a4d6ddc1e1e3e673879639e 538 Gene3D G3DSA:3.40.50.150 194 356 1.3E-19 T 13-10-2018 AP3564_19475 6058897d2473c3f2ff5f7873599344ea 329 Pfam PF02384 N-6 DNA Methylase 98 312 2.7E-15 T 13-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 AP3564_19475 6058897d2473c3f2ff5f7873599344ea 329 PIRSF PIRSF026567 2 329 2.2E-135 T 13-10-2018 IPR016843 S-adenosyl-L-methionine dependent adenine methyltransferase, bacteria, predicted AP3564_19475 6058897d2473c3f2ff5f7873599344ea 329 Gene3D G3DSA:1.10.150.470 2 86 3.0E-27 T 13-10-2018 AP3564_19475 6058897d2473c3f2ff5f7873599344ea 329 Gene3D G3DSA:3.40.50.150 88 329 6.6E-57 T 13-10-2018 AP3564_19475 6058897d2473c3f2ff5f7873599344ea 329 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 122 136 2.3E-7 T 13-10-2018 AP3564_19475 6058897d2473c3f2ff5f7873599344ea 329 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 218 242 2.3E-7 T 13-10-2018 AP3564_19475 6058897d2473c3f2ff5f7873599344ea 329 SUPERFAMILY SSF53335 24 312 2.59E-48 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_06050 5788d277ddb16077560a92a8dd67c9a9 200 Pfam PF04519 Polymer-forming cytoskeletal 124 177 3.8E-6 T 13-10-2018 IPR007607 Bactofilin A/B AP3564_06050 5788d277ddb16077560a92a8dd67c9a9 200 Gene3D G3DSA:1.10.10.1320 5 94 3.7E-8 T 13-10-2018 AP3564_06050 5788d277ddb16077560a92a8dd67c9a9 200 Pfam PF13490 Putative zinc-finger 3 37 1.8E-8 T 13-10-2018 IPR027383 Putative zinc-finger AP3564_08145 fe5f03ba4750181b3cfed5700ff565e0 715 Pfam PF01968 Hydantoinase/oxoprolinase 225 510 2.2E-78 T 13-10-2018 IPR002821 Hydantoinase A/oxoprolinase GO:0016787 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 AP3564_08145 fe5f03ba4750181b3cfed5700ff565e0 715 Pfam PF05378 Hydantoinase/oxoprolinase N-terminal region 12 200 8.2E-42 T 13-10-2018 IPR008040 Hydantoinaseoxoprolinase, N-terminal Reactome: R-HSA-174403|Reactome: R-HSA-5578998 AP3564_08145 fe5f03ba4750181b3cfed5700ff565e0 715 SUPERFAMILY SSF53067 11 331 1.51E-6 T 13-10-2018 AP3564_06395 162cfafb847541084649eb0dfed179f1 509 SMART SM00382 281 476 3.2E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_06395 162cfafb847541084649eb0dfed179f1 509 SMART SM00382 30 224 2.1E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_06395 162cfafb847541084649eb0dfed179f1 509 SUPERFAMILY SSF52540 4 233 2.66E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_06395 162cfafb847541084649eb0dfed179f1 509 SUPERFAMILY SSF52540 249 486 6.71E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_06395 162cfafb847541084649eb0dfed179f1 509 Gene3D G3DSA:3.40.50.300 257 507 6.1E-45 T 13-10-2018 AP3564_06395 162cfafb847541084649eb0dfed179f1 509 Pfam PF00005 ABC transporter 273 428 2.1E-22 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_06395 162cfafb847541084649eb0dfed179f1 509 Gene3D G3DSA:3.40.50.300 1 255 2.8E-58 T 13-10-2018 AP3564_06395 162cfafb847541084649eb0dfed179f1 509 ProSitePatterns PS00211 ABC transporters family signature. 400 414 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_06395 162cfafb847541084649eb0dfed179f1 509 Pfam PF00005 ABC transporter 21 173 1.7E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_15190 68005eb962f7cfa593b97e90b47fea04 301 Gene3D G3DSA:2.30.30.40 19 143 1.7E-35 T 13-10-2018 AP3564_15190 68005eb962f7cfa593b97e90b47fea04 301 SMART SM00260 13 149 2.0E-33 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AP3564_15190 68005eb962f7cfa593b97e90b47fea04 301 Pfam PF01584 CheW-like domain 18 150 2.0E-36 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AP3564_15190 68005eb962f7cfa593b97e90b47fea04 301 Gene3D G3DSA:2.40.50.180 34 149 1.7E-35 T 13-10-2018 AP3564_15190 68005eb962f7cfa593b97e90b47fea04 301 SUPERFAMILY SSF50341 7 152 1.07E-36 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 AP3564_15190 68005eb962f7cfa593b97e90b47fea04 301 SUPERFAMILY SSF52172 172 300 4.7E-26 T 13-10-2018 IPR011006 CheY-like superfamily AP3564_15190 68005eb962f7cfa593b97e90b47fea04 301 SMART SM00448 174 296 2.8E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_15190 68005eb962f7cfa593b97e90b47fea04 301 PIRSF PIRSF002867 1 301 3.6E-103 T 13-10-2018 IPR024181 Chemotaxis response regulator CheV AP3564_15190 68005eb962f7cfa593b97e90b47fea04 301 Gene3D G3DSA:3.40.50.2300 168 301 1.4E-27 T 13-10-2018 AP3564_15190 68005eb962f7cfa593b97e90b47fea04 301 Pfam PF00072 Response regulator receiver domain 177 296 1.3E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_16970 47e2d98006b34af55fc49a28d3887297 216 Hamap MF_00942 Endonuclease III [nth]. 1 211 39.335 T 13-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 AP3564_16970 47e2d98006b34af55fc49a28d3887297 216 TIGRFAM TIGR01083 nth: endonuclease III 4 196 8.3E-88 T 13-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 AP3564_16970 47e2d98006b34af55fc49a28d3887297 216 Gene3D G3DSA:1.10.340.30 22 133 4.0E-84 T 13-10-2018 AP3564_16970 47e2d98006b34af55fc49a28d3887297 216 Gene3D G3DSA:1.10.1670.10 16 205 4.0E-84 T 13-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 AP3564_16970 47e2d98006b34af55fc49a28d3887297 216 SMART SM00478 39 187 4.3E-70 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AP3564_16970 47e2d98006b34af55fc49a28d3887297 216 Pfam PF00633 Helix-hairpin-helix motif 101 128 1.4E-10 T 13-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 AP3564_16970 47e2d98006b34af55fc49a28d3887297 216 PIRSF PIRSF001435 1 213 1.9E-63 T 13-10-2018 AP3564_16970 47e2d98006b34af55fc49a28d3887297 216 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 35 170 7.4E-27 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AP3564_16970 47e2d98006b34af55fc49a28d3887297 216 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 189 205 - T 13-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 AP3564_16970 47e2d98006b34af55fc49a28d3887297 216 SMART SM00278 110 129 0.007 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AP3564_16970 47e2d98006b34af55fc49a28d3887297 216 SUPERFAMILY SSF48150 1 210 7.22E-76 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 AP3564_16970 47e2d98006b34af55fc49a28d3887297 216 SMART SM00525 188 208 0.0021 T 13-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 AP3564_16970 47e2d98006b34af55fc49a28d3887297 216 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 189 205 2.8E-4 T 13-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 AP3564_06565 fed8896d5e364d29e8848ab0b357ffd2 294 Pfam PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation 126 264 8.0E-68 T 13-10-2018 IPR015426 Acetaldehyde dehydrogenase, C-terminal GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 AP3564_06565 fed8896d5e364d29e8848ab0b357ffd2 294 Hamap MF_01657 Acetaldehyde dehydrogenase [mhpF]. 1 294 128.836 T 13-10-2018 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 AP3564_06565 fed8896d5e364d29e8848ab0b357ffd2 294 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 5 115 3.2E-9 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AP3564_06565 fed8896d5e364d29e8848ab0b357ffd2 294 SUPERFAMILY SSF51735 1 150 8.16E-29 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_06565 fed8896d5e364d29e8848ab0b357ffd2 294 Gene3D G3DSA:3.30.360.10 126 264 8.3E-129 T 13-10-2018 AP3564_06565 fed8896d5e364d29e8848ab0b357ffd2 294 TIGRFAM TIGR03215 ac_ald_DH_ac: acetaldehyde dehydrogenase (acetylating) 3 289 2.3E-142 T 13-10-2018 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 AP3564_06565 fed8896d5e364d29e8848ab0b357ffd2 294 PIRSF PIRSF015689 1 294 3.4E-136 T 13-10-2018 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 AP3564_06565 fed8896d5e364d29e8848ab0b357ffd2 294 SUPERFAMILY SSF55347 126 264 2.68E-62 T 13-10-2018 AP3564_06565 fed8896d5e364d29e8848ab0b357ffd2 294 Gene3D G3DSA:3.40.50.720 5 283 8.3E-129 T 13-10-2018 AP3564_06565 fed8896d5e364d29e8848ab0b357ffd2 294 SMART SM00859 5 118 3.9E-7 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AP3564_06155 bbd47c318d7f45f9aac71289e63f5752 337 Pfam PF02615 Malate/L-lactate dehydrogenase 6 334 1.4E-128 T 13-10-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0016491|GO:0055114 AP3564_06155 bbd47c318d7f45f9aac71289e63f5752 337 SUPERFAMILY SSF89733 5 336 1.57E-120 T 13-10-2018 IPR036111 Malate/L-sulfolactate/L-lactate dehydrogenase-like superfamily GO:0016491|GO:0055114 AP3564_06155 bbd47c318d7f45f9aac71289e63f5752 337 Gene3D G3DSA:1.10.1530.10 11 328 9.9E-128 T 13-10-2018 AP3564_06155 bbd47c318d7f45f9aac71289e63f5752 337 Gene3D G3DSA:3.30.1370.60 70 308 9.9E-128 T 13-10-2018 AP3564_16555 94e3b6f731df3c4ddcc7249058bc0556 304 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 242 251 2.0E-23 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AP3564_16555 94e3b6f731df3c4ddcc7249058bc0556 304 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 43 62 2.0E-23 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AP3564_16555 94e3b6f731df3c4ddcc7249058bc0556 304 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 127 138 2.0E-23 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AP3564_16555 94e3b6f731df3c4ddcc7249058bc0556 304 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 254 277 2.0E-23 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AP3564_16555 94e3b6f731df3c4ddcc7249058bc0556 304 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 1 291 39.348 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AP3564_16555 94e3b6f731df3c4ddcc7249058bc0556 304 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 2 140 4.7E-40 T 13-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 AP3564_16555 94e3b6f731df3c4ddcc7249058bc0556 304 PRINTS PR00101 Aspartate carbamoyltransferase signature 270 284 7.1E-33 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AP3564_16555 94e3b6f731df3c4ddcc7249058bc0556 304 PRINTS PR00101 Aspartate carbamoyltransferase signature 71 80 7.1E-33 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AP3564_16555 94e3b6f731df3c4ddcc7249058bc0556 304 PRINTS PR00101 Aspartate carbamoyltransferase signature 207 216 7.1E-33 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AP3564_16555 94e3b6f731df3c4ddcc7249058bc0556 304 PRINTS PR00101 Aspartate carbamoyltransferase signature 126 143 7.1E-33 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AP3564_16555 94e3b6f731df3c4ddcc7249058bc0556 304 PRINTS PR00101 Aspartate carbamoyltransferase signature 246 251 7.1E-33 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AP3564_16555 94e3b6f731df3c4ddcc7249058bc0556 304 PRINTS PR00101 Aspartate carbamoyltransferase signature 33 55 7.1E-33 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AP3564_16555 94e3b6f731df3c4ddcc7249058bc0556 304 Gene3D G3DSA:3.40.50.1370 127 268 3.9E-103 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AP3564_16555 94e3b6f731df3c4ddcc7249058bc0556 304 Gene3D G3DSA:3.40.50.1370 6 285 3.9E-103 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AP3564_16555 94e3b6f731df3c4ddcc7249058bc0556 304 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 2 289 6.3E-96 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AP3564_16555 94e3b6f731df3c4ddcc7249058bc0556 304 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 147 285 6.2E-22 T 13-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 AP3564_16555 94e3b6f731df3c4ddcc7249058bc0556 304 SUPERFAMILY SSF53671 1 289 2.36E-91 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AP3564_16555 94e3b6f731df3c4ddcc7249058bc0556 304 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 43 50 - T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AP3564_10410 4342c8595583e3e6ff1e280ea6002d23 163 SUPERFAMILY SSF47741 87 155 6.41E-32 T 13-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily AP3564_10410 4342c8595583e3e6ff1e280ea6002d23 163 SUPERFAMILY SSF54292 4 81 2.1E-25 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AP3564_10410 4342c8595583e3e6ff1e280ea6002d23 163 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 42 50 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AP3564_10410 4342c8595583e3e6ff1e280ea6002d23 163 Pfam PF01799 [2Fe-2S] binding domain 76 148 1.0E-29 T 13-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AP3564_10410 4342c8595583e3e6ff1e280ea6002d23 163 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 8 62 9.1E-7 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AP3564_10410 4342c8595583e3e6ff1e280ea6002d23 163 Gene3D G3DSA:1.10.150.120 79 163 4.7E-33 T 13-10-2018 AP3564_10410 4342c8595583e3e6ff1e280ea6002d23 163 Gene3D G3DSA:3.10.20.30 1 78 1.4E-29 T 13-10-2018 IPR012675 Beta-grasp domain superfamily AP3564_12595 b4c4aa1aab17241bcafafcb6afd5b8c3 471 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 349 457 3.1E-35 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AP3564_12595 b4c4aa1aab17241bcafafcb6afd5b8c3 471 SUPERFAMILY SSF55424 346 468 1.48E-40 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AP3564_12595 b4c4aa1aab17241bcafafcb6afd5b8c3 471 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 11 330 1.6E-71 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AP3564_12595 b4c4aa1aab17241bcafafcb6afd5b8c3 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 267 281 1.2E-74 T 13-10-2018 AP3564_12595 b4c4aa1aab17241bcafafcb6afd5b8c3 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 410 425 1.2E-74 T 13-10-2018 AP3564_12595 b4c4aa1aab17241bcafafcb6afd5b8c3 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 178 203 1.2E-74 T 13-10-2018 AP3564_12595 b4c4aa1aab17241bcafafcb6afd5b8c3 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 310 317 1.2E-74 T 13-10-2018 AP3564_12595 b4c4aa1aab17241bcafafcb6afd5b8c3 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 432 452 1.2E-74 T 13-10-2018 AP3564_12595 b4c4aa1aab17241bcafafcb6afd5b8c3 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 345 366 1.2E-74 T 13-10-2018 AP3564_12595 b4c4aa1aab17241bcafafcb6afd5b8c3 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 11 33 1.2E-74 T 13-10-2018 AP3564_12595 b4c4aa1aab17241bcafafcb6afd5b8c3 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 143 152 1.2E-74 T 13-10-2018 AP3564_12595 b4c4aa1aab17241bcafafcb6afd5b8c3 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 43 58 1.2E-74 T 13-10-2018 AP3564_12595 b4c4aa1aab17241bcafafcb6afd5b8c3 471 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 10 468 5.4E-175 T 13-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 AP3564_12595 b4c4aa1aab17241bcafafcb6afd5b8c3 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 178 196 1.2E-42 T 13-10-2018 AP3564_12595 b4c4aa1aab17241bcafafcb6afd5b8c3 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 282 1.2E-42 T 13-10-2018 AP3564_12595 b4c4aa1aab17241bcafafcb6afd5b8c3 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 140 158 1.2E-42 T 13-10-2018 AP3564_12595 b4c4aa1aab17241bcafafcb6afd5b8c3 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 12 31 1.2E-42 T 13-10-2018 AP3564_12595 b4c4aa1aab17241bcafafcb6afd5b8c3 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 295 317 1.2E-42 T 13-10-2018 AP3564_12595 b4c4aa1aab17241bcafafcb6afd5b8c3 471 SUPERFAMILY SSF51905 7 339 3.64E-65 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_12595 b4c4aa1aab17241bcafafcb6afd5b8c3 471 PIRSF PIRSF000350 3 459 6.8E-98 T 13-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 AP3564_12595 b4c4aa1aab17241bcafafcb6afd5b8c3 471 Gene3D G3DSA:3.50.50.60 13 335 1.2E-126 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_12595 b4c4aa1aab17241bcafafcb6afd5b8c3 471 Gene3D G3DSA:3.50.50.60 152 273 1.2E-126 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_12595 b4c4aa1aab17241bcafafcb6afd5b8c3 471 Gene3D G3DSA:3.30.390.30 348 468 4.5E-42 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AP3564_12595 b4c4aa1aab17241bcafafcb6afd5b8c3 471 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 44 54 - T 13-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 AP3564_04120 36e4740c6bcd5493f68f529457c7ef9f 441 Gene3D G3DSA:1.20.1250.30 235 413 6.8E-170 T 13-10-2018 AP3564_04120 36e4740c6bcd5493f68f529457c7ef9f 441 SMART SM00471 57 187 3.3E-12 T 13-10-2018 IPR003607 HD/PDEase domain AP3564_04120 36e4740c6bcd5493f68f529457c7ef9f 441 Gene3D G3DSA:1.10.3210.10 11 402 6.8E-170 T 13-10-2018 AP3564_04120 36e4740c6bcd5493f68f529457c7ef9f 441 SUPERFAMILY SSF109604 6 419 8.3E-124 T 13-10-2018 AP3564_04120 36e4740c6bcd5493f68f529457c7ef9f 441 Pfam PF01966 HD domain 61 181 2.0E-16 T 13-10-2018 IPR006674 HD domain AP3564_05090 6f3cd45b87c8018906706055bed0517e 94 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 8 50 4.5E-12 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 AP3564_05090 6f3cd45b87c8018906706055bed0517e 94 Gene3D G3DSA:2.10.260.10 1 53 2.5E-26 T 13-10-2018 AP3564_05090 6f3cd45b87c8018906706055bed0517e 94 SUPERFAMILY SSF89447 1 52 6.15E-17 T 13-10-2018 IPR037914 SpoVT-AbrB domain superfamily AP3564_05090 6f3cd45b87c8018906706055bed0517e 94 TIGRFAM TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family 8 49 3.4E-11 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 AP3564_05090 6f3cd45b87c8018906706055bed0517e 94 SMART SM00966 8 51 1.0E-10 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 AP3564_02955 defbf60dc4bcf4a9eac4a4fbabd6aa67 251 SUPERFAMILY SSF52540 3 243 5.99E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_02955 defbf60dc4bcf4a9eac4a4fbabd6aa67 251 SMART SM00382 28 222 1.1E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_02955 defbf60dc4bcf4a9eac4a4fbabd6aa67 251 Gene3D G3DSA:3.40.50.300 2 245 1.1E-65 T 13-10-2018 AP3564_02955 defbf60dc4bcf4a9eac4a4fbabd6aa67 251 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_02955 defbf60dc4bcf4a9eac4a4fbabd6aa67 251 Pfam PF00005 ABC transporter 19 175 6.4E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_02955 defbf60dc4bcf4a9eac4a4fbabd6aa67 251 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 222 244 1.2E-7 T 13-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AP3564_07670 f662326de3d22fc7f89979b628aec993 229 Gene3D G3DSA:3.40.50.2020 73 229 6.4E-20 T 13-10-2018 AP3564_07670 f662326de3d22fc7f89979b628aec993 229 SUPERFAMILY SSF53271 72 228 6.42E-25 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like AP3564_07670 f662326de3d22fc7f89979b628aec993 229 Pfam PF00156 Phosphoribosyl transferase domain 137 227 1.1E-9 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AP3564_13225 aeaf4ba8a399ac6faf0225aa5cdc9cd0 158 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 2 140 8.2E-56 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AP3564_13225 aeaf4ba8a399ac6faf0225aa5cdc9cd0 158 Pfam PF01625 Peptide methionine sulfoxide reductase 3 141 9.9E-53 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AP3564_13225 aeaf4ba8a399ac6faf0225aa5cdc9cd0 158 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 1 147 28.075 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AP3564_13225 aeaf4ba8a399ac6faf0225aa5cdc9cd0 158 SUPERFAMILY SSF55068 3 152 1.96E-61 T 13-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AP3564_13225 aeaf4ba8a399ac6faf0225aa5cdc9cd0 158 Gene3D G3DSA:3.30.1060.10 1 149 1.4E-56 T 13-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AP3564_18530 e90a7c1461970c8e482b024a2739fee9 229 Pfam PF12836 Helix-hairpin-helix motif 157 218 5.6E-26 T 13-10-2018 AP3564_18530 e90a7c1461970c8e482b024a2739fee9 229 Pfam PF10531 SLBB domain 75 129 1.1E-16 T 13-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AP3564_18530 e90a7c1461970c8e482b024a2739fee9 229 SMART SM00278 198 217 0.0072 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AP3564_18530 e90a7c1461970c8e482b024a2739fee9 229 SMART SM00278 168 187 0.0026 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AP3564_18530 e90a7c1461970c8e482b024a2739fee9 229 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 158 219 3.7E-27 T 13-10-2018 IPR004509 Competence protein ComEA, helix-hairpin-helix domain AP3564_18530 e90a7c1461970c8e482b024a2739fee9 229 SUPERFAMILY SSF47781 144 220 4.45E-31 T 13-10-2018 IPR010994 RuvA domain 2-like AP3564_18530 e90a7c1461970c8e482b024a2739fee9 229 Gene3D G3DSA:3.10.560.10 61 167 1.5E-11 T 13-10-2018 AP3564_18530 e90a7c1461970c8e482b024a2739fee9 229 Gene3D G3DSA:1.10.150.310 168 227 1.7E-17 T 13-10-2018 AP3564_18545 4395dd4c106e6c1d6f88b3c62a839aca 117 Gene3D G3DSA:3.30.460.10 1 108 1.3E-36 T 13-10-2018 AP3564_18545 4395dd4c106e6c1d6f88b3c62a839aca 117 Pfam PF02410 Ribosomal silencing factor during starvation 11 104 4.1E-25 T 13-10-2018 AP3564_18545 4395dd4c106e6c1d6f88b3c62a839aca 117 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 8 104 2.4E-34 T 13-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS AP3564_18545 4395dd4c106e6c1d6f88b3c62a839aca 117 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 3 105 24.474 T 13-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS AP3564_18545 4395dd4c106e6c1d6f88b3c62a839aca 117 SUPERFAMILY SSF81301 1 114 1.96E-38 T 13-10-2018 AP3564_14910 9611d192a4557e6e1a5ce444a2664a27 414 PRINTS PR00502 NUDIX hydrolase family signature 315 330 2.9E-8 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AP3564_14910 9611d192a4557e6e1a5ce444a2664a27 414 PRINTS PR00502 NUDIX hydrolase family signature 301 315 2.9E-8 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AP3564_14910 9611d192a4557e6e1a5ce444a2664a27 414 Pfam PF13242 HAD-hyrolase-like 182 252 1.8E-16 T 13-10-2018 AP3564_14910 9611d192a4557e6e1a5ce444a2664a27 414 SUPERFAMILY SSF56784 6 255 6.78E-59 T 13-10-2018 IPR036412 HAD-like superfamily AP3564_14910 9611d192a4557e6e1a5ce444a2664a27 414 Gene3D G3DSA:3.40.50.1000 8 231 1.5E-72 T 13-10-2018 IPR023214 HAD superfamily AP3564_14910 9611d192a4557e6e1a5ce444a2664a27 414 Pfam PF00293 NUDIX domain 278 395 7.1E-23 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AP3564_14910 9611d192a4557e6e1a5ce444a2664a27 414 ProSitePatterns PS00893 Nudix box signature. 306 327 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AP3564_14910 9611d192a4557e6e1a5ce444a2664a27 414 Pfam PF13344 Haloacid dehalogenase-like hydrolase 9 107 2.4E-24 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA AP3564_14910 9611d192a4557e6e1a5ce444a2664a27 414 SUPERFAMILY SSF55811 259 406 1.76E-34 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AP3564_14910 9611d192a4557e6e1a5ce444a2664a27 414 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 9 230 3.0E-47 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA AP3564_14910 9611d192a4557e6e1a5ce444a2664a27 414 Gene3D G3DSA:3.40.50.1000 86 182 1.5E-72 T 13-10-2018 IPR023214 HAD superfamily AP3564_14910 9611d192a4557e6e1a5ce444a2664a27 414 TIGRFAM TIGR01459 HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family 2 227 4.0E-31 T 13-10-2018 IPR006356 HAD-superfamily hydrolase, subfamily IIA, hypothetical 3 AP3564_14910 9611d192a4557e6e1a5ce444a2664a27 414 Gene3D G3DSA:3.90.79.10 260 411 4.3E-37 T 13-10-2018 AP3564_14910 9611d192a4557e6e1a5ce444a2664a27 414 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 181 221 1.4E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AP3564_03600 de3c9427aa32b910d21c90a1c9c8cc30 425 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 16 418 8.5E-115 T 13-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 AP3564_03600 de3c9427aa32b910d21c90a1c9c8cc30 425 PIRSF PIRSF006066 1 424 2.0E-134 T 13-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 AP3564_03600 de3c9427aa32b910d21c90a1c9c8cc30 425 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 6 415 1.1E-107 T 13-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit AP3564_14625 535e49bb3a490f430e4c3b2060a8133b 166 PIRSF PIRSF006443 1 166 5.7E-66 T 13-10-2018 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 AP3564_14625 535e49bb3a490f430e4c3b2060a8133b 166 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 14 154 2.6E-39 T 13-10-2018 IPR001453 MoaB/Mog domain AP3564_14625 535e49bb3a490f430e4c3b2060a8133b 166 SMART SM00852 17 159 1.9E-30 T 13-10-2018 IPR001453 MoaB/Mog domain AP3564_14625 535e49bb3a490f430e4c3b2060a8133b 166 SUPERFAMILY SSF53218 8 164 9.29E-46 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily AP3564_14625 535e49bb3a490f430e4c3b2060a8133b 166 Gene3D G3DSA:3.40.980.10 1 166 1.0E-51 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily AP3564_14625 535e49bb3a490f430e4c3b2060a8133b 166 Pfam PF00994 Probable molybdopterin binding domain 18 158 1.2E-37 T 13-10-2018 IPR001453 MoaB/Mog domain AP3564_02415 f8c16351da0667061f4df2156b0ff6d1 149 Pfam PF01475 Ferric uptake regulator family 18 135 1.1E-40 T 13-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 AP3564_02415 f8c16351da0667061f4df2156b0ff6d1 149 Gene3D G3DSA:3.30.1490.190 90 147 1.3E-23 T 13-10-2018 AP3564_02415 f8c16351da0667061f4df2156b0ff6d1 149 Gene3D G3DSA:1.10.10.10 3 89 1.8E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_02415 f8c16351da0667061f4df2156b0ff6d1 149 SUPERFAMILY SSF46785 10 139 1.24E-41 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_10100 bfab6edacbf7b53d3a27e8859508ff19 310 Gene3D G3DSA:3.40.47.10 1 310 3.0E-137 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AP3564_10100 bfab6edacbf7b53d3a27e8859508ff19 310 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 219 308 5.0E-38 T 13-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AP3564_10100 bfab6edacbf7b53d3a27e8859508ff19 310 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 1 308 73.934 T 13-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AP3564_10100 bfab6edacbf7b53d3a27e8859508ff19 310 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 106 184 4.7E-33 T 13-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AP3564_10100 bfab6edacbf7b53d3a27e8859508ff19 310 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 1 308 8.6E-138 T 13-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AP3564_10100 bfab6edacbf7b53d3a27e8859508ff19 310 SUPERFAMILY SSF53901 3 308 1.28E-73 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AP3564_07420 088460ff530cd2525b453e1890da258a 194 TIGRFAM TIGR04088 cognate_SipW: SipW-cognate class signal peptide 11 44 3.1E-14 T 13-10-2018 IPR023833 Signal peptide, camelysin AP3564_07420 088460ff530cd2525b453e1890da258a 194 Pfam PF12389 Camelysin metallo-endopeptidase 3 192 3.6E-86 T 13-10-2018 IPR022121 Peptidase M73, camelysin AP3564_19350 f3118bbc8780c732d1a41aff73f42f06 586 SMART SM00091 244 310 1.6E-5 T 13-10-2018 IPR000014 PAS domain AP3564_19350 f3118bbc8780c732d1a41aff73f42f06 586 Gene3D G3DSA:1.20.1480.50 153 242 1.5E-8 T 13-10-2018 AP3564_19350 f3118bbc8780c732d1a41aff73f42f06 586 PRINTS PR00344 Bacterial sensor protein C-terminal signature 545 563 2.6E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_19350 f3118bbc8780c732d1a41aff73f42f06 586 PRINTS PR00344 Bacterial sensor protein C-terminal signature 510 524 2.6E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_19350 f3118bbc8780c732d1a41aff73f42f06 586 PRINTS PR00344 Bacterial sensor protein C-terminal signature 528 538 2.6E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_19350 f3118bbc8780c732d1a41aff73f42f06 586 PRINTS PR00344 Bacterial sensor protein C-terminal signature 569 582 2.6E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_19350 f3118bbc8780c732d1a41aff73f42f06 586 SUPERFAMILY SSF55785 238 352 1.74E-11 T 13-10-2018 IPR035965 PAS domain superfamily AP3564_19350 f3118bbc8780c732d1a41aff73f42f06 586 SMART SM00387 473 585 1.8E-40 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_19350 f3118bbc8780c732d1a41aff73f42f06 586 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 243 359 2.9E-8 T 13-10-2018 IPR000014 PAS domain AP3564_19350 f3118bbc8780c732d1a41aff73f42f06 586 SMART SM00304 184 237 2.6E-4 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AP3564_19350 f3118bbc8780c732d1a41aff73f42f06 586 Gene3D G3DSA:3.30.565.10 428 581 1.7E-50 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_19350 f3118bbc8780c732d1a41aff73f42f06 586 Pfam PF16736 Single Cache-like 34 147 8.6E-16 T 13-10-2018 IPR031967 PhoR, single Cache-like domain AP3564_19350 f3118bbc8780c732d1a41aff73f42f06 586 SUPERFAMILY SSF47384 346 427 1.73E-21 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AP3564_19350 f3118bbc8780c732d1a41aff73f42f06 586 SUPERFAMILY SSF55874 416 581 2.36E-51 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_19350 f3118bbc8780c732d1a41aff73f42f06 586 Gene3D G3DSA:1.10.287.130 358 427 1.9E-26 T 13-10-2018 AP3564_19350 f3118bbc8780c732d1a41aff73f42f06 586 Gene3D G3DSA:3.30.450.20 255 357 2.5E-13 T 13-10-2018 AP3564_19350 f3118bbc8780c732d1a41aff73f42f06 586 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 473 582 3.8E-27 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_19350 f3118bbc8780c732d1a41aff73f42f06 586 SUPERFAMILY SSF158472 186 235 1.83E-7 T 13-10-2018 AP3564_19350 f3118bbc8780c732d1a41aff73f42f06 586 Pfam PF00512 His Kinase A (phospho-acceptor) domain 361 426 8.0E-20 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AP3564_19350 f3118bbc8780c732d1a41aff73f42f06 586 SMART SM00388 360 427 5.0E-24 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AP3564_19350 f3118bbc8780c732d1a41aff73f42f06 586 Pfam PF00989 PAS fold 244 351 8.9E-12 T 13-10-2018 IPR013767 PAS fold GO:0006355 AP3564_07560 b2ce9d5c95f196f2b2fc373046842891 427 SUPERFAMILY SSF48179 198 290 4.25E-27 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AP3564_07560 b2ce9d5c95f196f2b2fc373046842891 427 SUPERFAMILY SSF52413 304 414 3.79E-30 T 13-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 AP3564_07560 b2ce9d5c95f196f2b2fc373046842891 427 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 4 181 2.6E-55 T 13-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AP3564_07560 b2ce9d5c95f196f2b2fc373046842891 427 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 310 404 4.3E-28 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AP3564_07560 b2ce9d5c95f196f2b2fc373046842891 427 SMART SM00984 310 405 5.3E-34 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AP3564_07560 b2ce9d5c95f196f2b2fc373046842891 427 Gene3D G3DSA:3.40.50.720 1 196 1.7E-71 T 13-10-2018 AP3564_07560 b2ce9d5c95f196f2b2fc373046842891 427 PIRSF PIRSF000124 3 420 2.8E-82 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AP3564_07560 b2ce9d5c95f196f2b2fc373046842891 427 PIRSF PIRSF500136 1 421 6.1E-159 T 13-10-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 AP3564_07560 b2ce9d5c95f196f2b2fc373046842891 427 SUPERFAMILY SSF51735 3 192 1.14E-47 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_07560 b2ce9d5c95f196f2b2fc373046842891 427 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 199 285 6.1E-25 T 13-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AP3564_07560 b2ce9d5c95f196f2b2fc373046842891 427 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 3 401 1.2E-136 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AP3564_07560 b2ce9d5c95f196f2b2fc373046842891 427 Gene3D G3DSA:3.40.50.720 197 424 4.9E-73 T 13-10-2018 AP3564_15430 ad845dc8d8c3812ba3aee6d69857cb79 248 Gene3D G3DSA:3.30.70.2330 132 225 1.2E-15 T 13-10-2018 AP3564_15430 ad845dc8d8c3812ba3aee6d69857cb79 248 SMART SM00910 130 229 4.6E-23 T 13-10-2018 IPR014905 HIRAN domain GO:0003676|GO:0008270|GO:0016818 Reactome: R-HSA-8866654 AP3564_15430 ad845dc8d8c3812ba3aee6d69857cb79 248 Pfam PF08797 HIRAN domain 132 226 3.5E-14 T 13-10-2018 IPR014905 HIRAN domain GO:0003676|GO:0008270|GO:0016818 Reactome: R-HSA-8866654 AP3564_00860 6ac52d2c25dc6bcc084640dff18d85a6 319 Gene3D G3DSA:3.40.50.10330 6 125 1.2E-93 T 13-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 AP3564_00860 6ac52d2c25dc6bcc084640dff18d85a6 319 Pfam PF00781 Diacylglycerol kinase catalytic domain 4 128 8.4E-38 T 13-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 AP3564_00860 6ac52d2c25dc6bcc084640dff18d85a6 319 SMART SM00046 3 131 3.2E-11 T 13-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 AP3564_00860 6ac52d2c25dc6bcc084640dff18d85a6 319 SUPERFAMILY SSF111331 1 295 1.13E-84 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily AP3564_00860 6ac52d2c25dc6bcc084640dff18d85a6 319 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 1 293 1.2E-118 T 13-10-2018 IPR005218 Diacylglycerol/lipid kinase AP3564_00860 6ac52d2c25dc6bcc084640dff18d85a6 319 Gene3D G3DSA:2.60.200.40 126 280 1.2E-93 T 13-10-2018 AP3564_19405 58b448c74d28a0041a296bd89d9ad28f 1112 Gene3D G3DSA:1.10.10.1600 413 490 6.0E-22 T 13-10-2018 AP3564_19405 58b448c74d28a0041a296bd89d9ad28f 1112 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 281 702 6.2E-172 T 13-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AP3564_19405 58b448c74d28a0041a296bd89d9ad28f 1112 SUPERFAMILY SSF160975 802 847 9.29E-5 T 13-10-2018 AP3564_19405 58b448c74d28a0041a296bd89d9ad28f 1112 Gene3D G3DSA:3.20.20.140 1 259 3.0E-78 T 13-10-2018 AP3564_19405 58b448c74d28a0041a296bd89d9ad28f 1112 Pfam PF01336 OB-fold nucleic acid binding domain 963 1031 1.1E-9 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 AP3564_19405 58b448c74d28a0041a296bd89d9ad28f 1112 Gene3D G3DSA:2.40.50.140 941 1029 4.3E-5 T 13-10-2018 AP3564_19405 58b448c74d28a0041a296bd89d9ad28f 1112 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 3 991 0.0 T 13-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AP3564_19405 58b448c74d28a0041a296bd89d9ad28f 1112 SUPERFAMILY SSF89550 18 252 5.89E-18 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 AP3564_19405 58b448c74d28a0041a296bd89d9ad28f 1112 SMART SM00481 4 71 1.0E-22 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal AP3564_19405 58b448c74d28a0041a296bd89d9ad28f 1112 Pfam PF02811 PHP domain 5 164 3.3E-29 T 13-10-2018 IPR004013 PHP domain GO:0003824 AP3564_19405 58b448c74d28a0041a296bd89d9ad28f 1112 Gene3D G3DSA:1.10.150.870 757 850 2.9E-7 T 13-10-2018 AP3564_19405 58b448c74d28a0041a296bd89d9ad28f 1112 SUPERFAMILY SSF50249 948 1012 8.85E-5 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_19405 58b448c74d28a0041a296bd89d9ad28f 1112 Pfam PF14579 Helix-hairpin-helix motif 776 863 2.2E-25 T 13-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AP3564_12680 844fe6bb18e64bca99bd0800d0b1354d 139 SMART SM01321 14 134 5.1E-35 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 AP3564_12680 844fe6bb18e64bca99bd0800d0b1354d 139 Gene3D G3DSA:3.30.70.1290 6 138 4.7E-41 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 AP3564_12680 844fe6bb18e64bca99bd0800d0b1354d 139 Pfam PF01797 Transposase IS200 like 14 134 6.0E-36 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 AP3564_12680 844fe6bb18e64bca99bd0800d0b1354d 139 SUPERFAMILY SSF143422 7 135 8.63E-40 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 AP3564_00520 8c6b7f6cc3d3b1bf2dba4b037acf6f65 344 SUPERFAMILY SSF50129 1 170 9.28E-55 T 13-10-2018 IPR011032 GroES-like superfamily AP3564_00520 8c6b7f6cc3d3b1bf2dba4b037acf6f65 344 Gene3D G3DSA:3.40.50.720 151 287 3.5E-107 T 13-10-2018 AP3564_00520 8c6b7f6cc3d3b1bf2dba4b037acf6f65 344 SUPERFAMILY SSF51735 136 307 3.51E-40 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_00520 8c6b7f6cc3d3b1bf2dba4b037acf6f65 344 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AP3564_00520 8c6b7f6cc3d3b1bf2dba4b037acf6f65 344 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 133 4.5E-35 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AP3564_00520 8c6b7f6cc3d3b1bf2dba4b037acf6f65 344 Gene3D G3DSA:3.90.180.10 18 332 3.5E-107 T 13-10-2018 AP3564_00520 8c6b7f6cc3d3b1bf2dba4b037acf6f65 344 Pfam PF00107 Zinc-binding dehydrogenase 173 302 3.0E-28 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AP3564_00520 8c6b7f6cc3d3b1bf2dba4b037acf6f65 344 SMART SM00829 10 339 2.1E-9 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AP3564_04985 99f4a54ba1c9cdddeac4948b4177512a 428 SUPERFAMILY SSF54106 2 47 3.4E-11 T 13-10-2018 AP3564_04985 99f4a54ba1c9cdddeac4948b4177512a 428 SMART SM00257 52 96 3.6E-11 T 13-10-2018 IPR018392 LysM domain AP3564_04985 99f4a54ba1c9cdddeac4948b4177512a 428 SMART SM00257 3 47 9.6E-16 T 13-10-2018 IPR018392 LysM domain AP3564_04985 99f4a54ba1c9cdddeac4948b4177512a 428 SMART SM00636 115 411 4.6E-26 T 13-10-2018 IPR011583 Chitinase II GO:0008061 AP3564_04985 99f4a54ba1c9cdddeac4948b4177512a 428 Gene3D G3DSA:3.10.50.10 323 382 6.6E-106 T 13-10-2018 IPR029070 Chitinase insertion domain superfamily AP3564_04985 99f4a54ba1c9cdddeac4948b4177512a 428 SUPERFAMILY SSF51445 112 417 1.63E-44 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily AP3564_04985 99f4a54ba1c9cdddeac4948b4177512a 428 SUPERFAMILY SSF54106 51 96 1.96E-10 T 13-10-2018 AP3564_04985 99f4a54ba1c9cdddeac4948b4177512a 428 Pfam PF00704 Glycosyl hydrolases family 18 188 409 9.6E-24 T 13-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 AP3564_04985 99f4a54ba1c9cdddeac4948b4177512a 428 Gene3D G3DSA:3.10.350.10 2 50 8.5E-15 T 13-10-2018 IPR036779 LysM domain superfamily AP3564_04985 99f4a54ba1c9cdddeac4948b4177512a 428 Gene3D G3DSA:3.10.350.10 51 107 3.2E-14 T 13-10-2018 IPR036779 LysM domain superfamily AP3564_04985 99f4a54ba1c9cdddeac4948b4177512a 428 Pfam PF01476 LysM domain 53 96 6.1E-11 T 13-10-2018 IPR018392 LysM domain AP3564_04985 99f4a54ba1c9cdddeac4948b4177512a 428 Pfam PF01476 LysM domain 4 47 5.7E-13 T 13-10-2018 IPR018392 LysM domain AP3564_04985 99f4a54ba1c9cdddeac4948b4177512a 428 Gene3D G3DSA:3.20.20.80 131 417 6.6E-106 T 13-10-2018 AP3564_04305 9b094b782bbeb19eafcbaa9f7469ec28 261 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 253 1.0E-54 T 13-10-2018 IPR000150 Cof family GO:0016787 AP3564_04305 9b094b782bbeb19eafcbaa9f7469ec28 261 ProSitePatterns PS01228 Hypothetical cof family signature 1. 5 16 - T 13-10-2018 AP3564_04305 9b094b782bbeb19eafcbaa9f7469ec28 261 SUPERFAMILY SSF56784 1 259 5.77E-56 T 13-10-2018 IPR036412 HAD-like superfamily AP3564_04305 9b094b782bbeb19eafcbaa9f7469ec28 261 Gene3D G3DSA:3.40.50.1000 4 251 1.3E-55 T 13-10-2018 IPR023214 HAD superfamily AP3564_04305 9b094b782bbeb19eafcbaa9f7469ec28 261 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 227 4.2E-27 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 AP3564_04305 9b094b782bbeb19eafcbaa9f7469ec28 261 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 253 7.7E-55 T 13-10-2018 AP3564_04305 9b094b782bbeb19eafcbaa9f7469ec28 261 Gene3D G3DSA:3.30.1240.10 81 183 1.3E-55 T 13-10-2018 AP3564_04305 9b094b782bbeb19eafcbaa9f7469ec28 261 ProSitePatterns PS01229 Hypothetical cof family signature 2. 208 230 - T 13-10-2018 AP3564_17600 188ac9babfb3ba4185634586ed90f074 73 Pfam PF13025 Protein of unknown function (DUF3886) 7 70 2.8E-10 T 13-10-2018 IPR024980 Protein of unknown function DUF3886 AP3564_06465 9752a574fa6a223acd53ca4af0a6d019 403 Gene3D G3DSA:1.20.1250.20 1 390 1.6E-70 T 13-10-2018 AP3564_06465 9752a574fa6a223acd53ca4af0a6d019 403 PRINTS PR01035 Tetracycline resistance protein signature 161 181 8.2E-19 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AP3564_06465 9752a574fa6a223acd53ca4af0a6d019 403 PRINTS PR01035 Tetracycline resistance protein signature 338 361 8.2E-19 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AP3564_06465 9752a574fa6a223acd53ca4af0a6d019 403 PRINTS PR01035 Tetracycline resistance protein signature 18 34 8.2E-19 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AP3564_06465 9752a574fa6a223acd53ca4af0a6d019 403 PRINTS PR01035 Tetracycline resistance protein signature 133 155 8.2E-19 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AP3564_06465 9752a574fa6a223acd53ca4af0a6d019 403 PRINTS PR01035 Tetracycline resistance protein signature 250 270 8.2E-19 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AP3564_06465 9752a574fa6a223acd53ca4af0a6d019 403 PRINTS PR01035 Tetracycline resistance protein signature 75 99 8.2E-19 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AP3564_06465 9752a574fa6a223acd53ca4af0a6d019 403 SUPERFAMILY SSF103473 5 392 1.19E-72 T 13-10-2018 IPR036259 MFS transporter superfamily AP3564_06465 9752a574fa6a223acd53ca4af0a6d019 403 Pfam PF07690 Major Facilitator Superfamily 12 244 2.6E-42 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AP3564_07475 495d6db0d19996c2d240ac2d0ba63cbd 119 SUPERFAMILY SSF141530 3 118 3.92E-34 T 13-10-2018 IPR036665 Phosphotransferase system, glucitol/sorbitol-specific IIA component superfamily GO:0005737|GO:0008982|GO:0009401 AP3564_07475 495d6db0d19996c2d240ac2d0ba63cbd 119 Gene3D G3DSA:2.40.33.40 1 119 9.6E-34 T 13-10-2018 IPR036665 Phosphotransferase system, glucitol/sorbitol-specific IIA component superfamily GO:0005737|GO:0008982|GO:0009401 AP3564_07475 495d6db0d19996c2d240ac2d0ba63cbd 119 ProDom PD015842 PTS IIA COMPONENT GLUCITOL/SORBITOL-SPECIFIC SYSTEM ENZYME TRANSFERASE SYSTEM PHOSPHOTRANSFERASE EIIA 6 117 2.0E-31 T 13-10-2018 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component GO:0005737|GO:0008982|GO:0009401 AP3564_07475 495d6db0d19996c2d240ac2d0ba63cbd 119 Pfam PF03829 PTS system glucitol/sorbitol-specific IIA component 3 115 2.0E-34 T 13-10-2018 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component GO:0005737|GO:0008982|GO:0009401 AP3564_08435 cb4d2b58474dcb8f9d44fee9db7d2857 106 Pfam PF03551 Transcriptional regulator PadR-like family 18 88 5.2E-22 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal AP3564_08435 cb4d2b58474dcb8f9d44fee9db7d2857 106 SUPERFAMILY SSF46785 3 101 3.68E-27 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_08435 cb4d2b58474dcb8f9d44fee9db7d2857 106 Gene3D G3DSA:1.10.10.10 2 104 2.8E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_03630 11adddfe2c0b551c36b6bdddf72c1269 506 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 241 3.6E-48 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AP3564_03630 11adddfe2c0b551c36b6bdddf72c1269 506 PIRSF PIRSF000538 1 493 1.3E-121 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AP3564_03630 11adddfe2c0b551c36b6bdddf72c1269 506 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 254 437 2.3E-33 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AP3564_03630 11adddfe2c0b551c36b6bdddf72c1269 506 Gene3D G3DSA:3.30.420.40 246 496 8.6E-67 T 13-10-2018 AP3564_03630 11adddfe2c0b551c36b6bdddf72c1269 506 SUPERFAMILY SSF53067 250 487 4.06E-55 T 13-10-2018 AP3564_03630 11adddfe2c0b551c36b6bdddf72c1269 506 Gene3D G3DSA:3.30.420.40 1 245 8.8E-65 T 13-10-2018 AP3564_03630 11adddfe2c0b551c36b6bdddf72c1269 506 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 351 371 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AP3564_03630 11adddfe2c0b551c36b6bdddf72c1269 506 SUPERFAMILY SSF53067 3 245 1.05E-59 T 13-10-2018 AP3564_03535 11adddfe2c0b551c36b6bdddf72c1269 506 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 241 3.6E-48 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AP3564_03535 11adddfe2c0b551c36b6bdddf72c1269 506 PIRSF PIRSF000538 1 493 1.3E-121 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AP3564_03535 11adddfe2c0b551c36b6bdddf72c1269 506 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 254 437 2.3E-33 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AP3564_03535 11adddfe2c0b551c36b6bdddf72c1269 506 Gene3D G3DSA:3.30.420.40 246 496 8.6E-67 T 13-10-2018 AP3564_03535 11adddfe2c0b551c36b6bdddf72c1269 506 SUPERFAMILY SSF53067 250 487 4.06E-55 T 13-10-2018 AP3564_03535 11adddfe2c0b551c36b6bdddf72c1269 506 Gene3D G3DSA:3.30.420.40 1 245 8.8E-65 T 13-10-2018 AP3564_03535 11adddfe2c0b551c36b6bdddf72c1269 506 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 351 371 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AP3564_03535 11adddfe2c0b551c36b6bdddf72c1269 506 SUPERFAMILY SSF53067 3 245 1.05E-59 T 13-10-2018 AP3564_19630 11adddfe2c0b551c36b6bdddf72c1269 506 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 241 3.6E-48 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AP3564_19630 11adddfe2c0b551c36b6bdddf72c1269 506 PIRSF PIRSF000538 1 493 1.3E-121 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AP3564_19630 11adddfe2c0b551c36b6bdddf72c1269 506 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 254 437 2.3E-33 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AP3564_19630 11adddfe2c0b551c36b6bdddf72c1269 506 Gene3D G3DSA:3.30.420.40 246 496 8.6E-67 T 13-10-2018 AP3564_19630 11adddfe2c0b551c36b6bdddf72c1269 506 SUPERFAMILY SSF53067 250 487 4.06E-55 T 13-10-2018 AP3564_19630 11adddfe2c0b551c36b6bdddf72c1269 506 Gene3D G3DSA:3.30.420.40 1 245 8.8E-65 T 13-10-2018 AP3564_19630 11adddfe2c0b551c36b6bdddf72c1269 506 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 351 371 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AP3564_19630 11adddfe2c0b551c36b6bdddf72c1269 506 SUPERFAMILY SSF53067 3 245 1.05E-59 T 13-10-2018 AP3564_16115 f444191fb34eba2f21074b3598d3e043 677 Gene3D G3DSA:3.40.30.60 343 485 8.9E-56 T 13-10-2018 AP3564_16115 f444191fb34eba2f21074b3598d3e043 677 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 22 35 1.3E-55 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AP3564_16115 f444191fb34eba2f21074b3598d3e043 677 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 121 137 1.3E-55 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AP3564_16115 f444191fb34eba2f21074b3598d3e043 677 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 140 158 1.3E-55 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AP3564_16115 f444191fb34eba2f21074b3598d3e043 677 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 221 235 1.3E-55 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AP3564_16115 f444191fb34eba2f21074b3598d3e043 677 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 59 78 1.3E-55 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AP3564_16115 f444191fb34eba2f21074b3598d3e043 677 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 170 187 1.3E-55 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AP3564_16115 f444191fb34eba2f21074b3598d3e043 677 Gene3D G3DSA:1.10.490.80 577 675 2.3E-30 T 13-10-2018 AP3564_16115 f444191fb34eba2f21074b3598d3e043 677 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 126 149 - T 13-10-2018 IPR025505 FHIPEP conserved site AP3564_16115 f444191fb34eba2f21074b3598d3e043 677 Gene3D G3DSA:1.10.8.540 486 575 6.2E-31 T 13-10-2018 AP3564_16115 f444191fb34eba2f21074b3598d3e043 677 PIRSF PIRSF005419 1 677 1.1E-263 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AP3564_16115 f444191fb34eba2f21074b3598d3e043 677 Pfam PF00771 FHIPEP family 15 667 3.3E-278 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AP3564_16115 f444191fb34eba2f21074b3598d3e043 677 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 4 675 5.0E-283 T 13-10-2018 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 AP3564_04795 ae1bc09e93a6030fcb5887fded80d21e 68 PIRSF PIRSF037263 1 66 2.3E-34 T 13-10-2018 IPR009296 Protein of unknown function DUF951 AP3564_04795 ae1bc09e93a6030fcb5887fded80d21e 68 Pfam PF06107 Bacterial protein of unknown function (DUF951) 6 60 3.1E-29 T 13-10-2018 IPR009296 Protein of unknown function DUF951 AP3564_17450 28c39b3248eb44d11459ac7f8a341e25 122 Gene3D G3DSA:3.40.630.30 4 122 7.1E-16 T 13-10-2018 AP3564_17450 28c39b3248eb44d11459ac7f8a341e25 122 Pfam PF13673 Acetyltransferase (GNAT) domain 31 120 1.5E-10 T 13-10-2018 IPR000182 GNAT domain AP3564_17450 28c39b3248eb44d11459ac7f8a341e25 122 SUPERFAMILY SSF55729 35 115 4.75E-14 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase AP3564_08195 e1ddfd2fc1724fdd888f76dee0637d68 565 SUPERFAMILY SSF90123 6 306 5.89E-70 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AP3564_08195 e1ddfd2fc1724fdd888f76dee0637d68 565 Gene3D G3DSA:1.20.1560.10 1 309 1.8E-77 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AP3564_08195 e1ddfd2fc1724fdd888f76dee0637d68 565 Pfam PF00005 ABC transporter 336 486 1.6E-37 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_08195 e1ddfd2fc1724fdd888f76dee0637d68 565 ProSitePatterns PS00211 ABC transporters family signature. 458 472 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_08195 e1ddfd2fc1724fdd888f76dee0637d68 565 Gene3D G3DSA:3.40.50.300 311 562 3.5E-93 T 13-10-2018 AP3564_08195 e1ddfd2fc1724fdd888f76dee0637d68 565 SUPERFAMILY SSF52540 311 557 1.89E-92 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_08195 e1ddfd2fc1724fdd888f76dee0637d68 565 Pfam PF00664 ABC transporter transmembrane region 10 277 1.2E-45 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AP3564_08195 e1ddfd2fc1724fdd888f76dee0637d68 565 SMART SM00382 345 532 5.2E-18 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_08560 c5c43e63c51f2b6b57f9956038d80d9f 203 Gene3D G3DSA:3.40.50.880 1 202 2.4E-73 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AP3564_08560 c5c43e63c51f2b6b57f9956038d80d9f 203 SUPERFAMILY SSF52317 2 199 2.08E-55 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AP3564_08560 c5c43e63c51f2b6b57f9956038d80d9f 203 PIRSF PIRSF000495 1 202 3.3E-74 T 13-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 AP3564_08560 c5c43e63c51f2b6b57f9956038d80d9f 203 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 2 197 2.6E-74 T 13-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 AP3564_08560 c5c43e63c51f2b6b57f9956038d80d9f 203 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 1 199 35.708 T 13-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 AP3564_08560 c5c43e63c51f2b6b57f9956038d80d9f 203 Pfam PF00117 Glutamine amidotransferase class-I 4 194 6.4E-20 T 13-10-2018 IPR017926 Glutamine amidotransferase AP3564_05555 dcc09bc0183dd6ab5c33fedd688039a7 174 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 10 30 - T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site AP3564_16420 eae5b92db08ead1796394ac138d4d3f6 655 Pfam PF00069 Protein kinase domain 11 261 1.1E-59 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AP3564_16420 eae5b92db08ead1796394ac138d4d3f6 655 Pfam PF03793 PASTA domain 506 566 1.5E-15 T 13-10-2018 IPR005543 PASTA domain AP3564_16420 eae5b92db08ead1796394ac138d4d3f6 655 Pfam PF03793 PASTA domain 437 500 1.8E-13 T 13-10-2018 IPR005543 PASTA domain AP3564_16420 eae5b92db08ead1796394ac138d4d3f6 655 Pfam PF03793 PASTA domain 369 429 9.4E-14 T 13-10-2018 IPR005543 PASTA domain AP3564_16420 eae5b92db08ead1796394ac138d4d3f6 655 Gene3D G3DSA:2.60.40.2560 574 652 1.8E-13 T 13-10-2018 AP3564_16420 eae5b92db08ead1796394ac138d4d3f6 655 Gene3D G3DSA:3.30.10.20 366 433 1.7E-15 T 13-10-2018 AP3564_16420 eae5b92db08ead1796394ac138d4d3f6 655 Gene3D G3DSA:3.30.10.20 434 502 3.3E-14 T 13-10-2018 AP3564_16420 eae5b92db08ead1796394ac138d4d3f6 655 Gene3D G3DSA:3.30.200.20 1 90 5.9E-34 T 13-10-2018 AP3564_16420 eae5b92db08ead1796394ac138d4d3f6 655 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 130 142 - T 13-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 AP3564_16420 eae5b92db08ead1796394ac138d4d3f6 655 SUPERFAMILY SSF56112 8 269 7.42E-87 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily AP3564_16420 eae5b92db08ead1796394ac138d4d3f6 655 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 17 40 - T 13-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 AP3564_16420 eae5b92db08ead1796394ac138d4d3f6 655 SMART SM00740 365 432 5.6E-17 T 13-10-2018 IPR005543 PASTA domain AP3564_16420 eae5b92db08ead1796394ac138d4d3f6 655 SMART SM00740 501 567 8.7E-17 T 13-10-2018 IPR005543 PASTA domain AP3564_16420 eae5b92db08ead1796394ac138d4d3f6 655 SMART SM00740 433 500 3.4E-14 T 13-10-2018 IPR005543 PASTA domain AP3564_16420 eae5b92db08ead1796394ac138d4d3f6 655 Gene3D G3DSA:3.30.10.20 504 569 1.0E-16 T 13-10-2018 AP3564_16420 eae5b92db08ead1796394ac138d4d3f6 655 SMART SM00220 11 271 1.8E-78 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AP3564_16420 eae5b92db08ead1796394ac138d4d3f6 655 Gene3D G3DSA:1.10.510.10 92 282 1.4E-57 T 13-10-2018 AP3564_16420 eae5b92db08ead1796394ac138d4d3f6 655 SUPERFAMILY SSF54184 505 565 6.15E-5 T 13-10-2018 AP3564_03520 692bc75dfd12ef5f92e5face10d4886c 448 Pfam PF04693 Archaeal putative transposase ISC1217 284 338 1.4E-4 T 13-10-2018 IPR006783 Transposase, ISC1217 AP3564_03520 692bc75dfd12ef5f92e5face10d4886c 448 Pfam PF13546 DDE superfamily endonuclease 73 256 1.4E-23 T 13-10-2018 IPR038721 Transposase IS701-like, DDE domain AP3564_03520 692bc75dfd12ef5f92e5face10d4886c 448 SUPERFAMILY SSF53098 50 407 2.2E-49 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_19645 692bc75dfd12ef5f92e5face10d4886c 448 Pfam PF04693 Archaeal putative transposase ISC1217 284 338 1.4E-4 T 13-10-2018 IPR006783 Transposase, ISC1217 AP3564_19645 692bc75dfd12ef5f92e5face10d4886c 448 Pfam PF13546 DDE superfamily endonuclease 73 256 1.4E-23 T 13-10-2018 IPR038721 Transposase IS701-like, DDE domain AP3564_19645 692bc75dfd12ef5f92e5face10d4886c 448 SUPERFAMILY SSF53098 50 407 2.2E-49 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_08905 9be713aed1314bb4576a5de6c5435f49 579 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 16 128 4.7E-29 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AP3564_08905 9be713aed1314bb4576a5de6c5435f49 579 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 237 400 2.0E-38 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AP3564_08905 9be713aed1314bb4576a5de6c5435f49 579 Gene3D G3DSA:1.10.540.10 1 130 4.7E-41 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AP3564_08905 9be713aed1314bb4576a5de6c5435f49 579 Gene3D G3DSA:1.20.140.10 237 406 5.2E-55 T 13-10-2018 AP3564_08905 9be713aed1314bb4576a5de6c5435f49 579 Gene3D G3DSA:1.20.140.10 408 579 4.7E-55 T 13-10-2018 AP3564_08905 9be713aed1314bb4576a5de6c5435f49 579 SUPERFAMILY SSF56645 7 248 4.84E-74 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AP3564_08905 9be713aed1314bb4576a5de6c5435f49 579 SUPERFAMILY SSF47203 235 407 8.38E-47 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AP3564_08905 9be713aed1314bb4576a5de6c5435f49 579 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 363 382 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AP3564_08905 9be713aed1314bb4576a5de6c5435f49 579 Gene3D G3DSA:2.40.110.10 131 236 1.7E-35 T 13-10-2018 AP3564_08905 9be713aed1314bb4576a5de6c5435f49 579 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 134 146 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AP3564_08905 9be713aed1314bb4576a5de6c5435f49 579 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 132 225 2.5E-22 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AP3564_14695 39223575fd58c993b0d1ce0ab735a644 809 Gene3D G3DSA:1.10.268.10 368 456 1.6E-199 T 13-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AP3564_14695 39223575fd58c993b0d1ce0ab735a644 809 Gene3D G3DSA:3.90.199.10 31 485 1.6E-199 T 13-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 AP3564_14695 39223575fd58c993b0d1ce0ab735a644 809 Hamap MF_00937 DNA topoisomerase 4 subunit A [parC]. 6 806 33.25 T 13-10-2018 IPR005741 DNA topoisomerase IV subunit A, Gram-positive GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AP3564_14695 39223575fd58c993b0d1ce0ab735a644 809 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 12 797 1.8E-265 T 13-10-2018 AP3564_14695 39223575fd58c993b0d1ce0ab735a644 809 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 656 698 1.8E-7 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AP3564_14695 39223575fd58c993b0d1ce0ab735a644 809 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 504 523 0.02 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AP3564_14695 39223575fd58c993b0d1ce0ab735a644 809 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 549 594 4.7E-6 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AP3564_14695 39223575fd58c993b0d1ce0ab735a644 809 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 709 756 2.9 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AP3564_14695 39223575fd58c993b0d1ce0ab735a644 809 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 607 650 1.8E-8 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AP3564_14695 39223575fd58c993b0d1ce0ab735a644 809 SUPERFAMILY SSF101904 499 805 3.4E-90 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal AP3564_14695 39223575fd58c993b0d1ce0ab735a644 809 Gene3D G3DSA:3.30.1360.40 235 331 1.6E-199 T 13-10-2018 AP3564_14695 39223575fd58c993b0d1ce0ab735a644 809 TIGRFAM TIGR01061 parC_Gpos: DNA topoisomerase IV, A subunit 9 748 0.0 T 13-10-2018 IPR005741 DNA topoisomerase IV subunit A, Gram-positive GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AP3564_14695 39223575fd58c993b0d1ce0ab735a644 809 SUPERFAMILY SSF56719 30 485 1.44E-169 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AP3564_14695 39223575fd58c993b0d1ce0ab735a644 809 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 31 470 5.0E-152 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AP3564_14695 39223575fd58c993b0d1ce0ab735a644 809 SMART SM00434 10 463 5.6E-261 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AP3564_14695 39223575fd58c993b0d1ce0ab735a644 809 Gene3D G3DSA:2.120.10.90 499 809 1.2E-98 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal AP3564_18570 afe69052582ba6d488391f08f9517c85 368 Gene3D G3DSA:3.40.50.300 58 226 2.0E-49 T 13-10-2018 AP3564_18570 afe69052582ba6d488391f08f9517c85 368 SUPERFAMILY SSF52540 67 280 1.74E-31 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_18570 afe69052582ba6d488391f08f9517c85 368 Pfam PF01926 50S ribosome-binding GTPase 164 226 1.7E-13 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AP3564_18570 afe69052582ba6d488391f08f9517c85 368 TIGRFAM TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH 8 368 4.2E-156 T 13-10-2018 IPR019988 GTP-binding protein, riobosome biogenesis, YqeH AP3564_04805 210d3518424956e43097adb0606aeb27 284 Gene3D G3DSA:3.90.1530.30 38 100 2.8E-26 T 13-10-2018 AP3564_04805 210d3518424956e43097adb0606aeb27 284 SUPERFAMILY SSF109709 106 217 1.41E-37 T 13-10-2018 AP3564_04805 210d3518424956e43097adb0606aeb27 284 Pfam PF02195 ParB-like nuclease domain 27 113 2.7E-28 T 13-10-2018 IPR003115 ParB/Sulfiredoxin AP3564_04805 210d3518424956e43097adb0606aeb27 284 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 22 199 1.2E-66 T 13-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 AP3564_04805 210d3518424956e43097adb0606aeb27 284 SMART SM00470 25 114 2.5E-37 T 13-10-2018 IPR003115 ParB/Sulfiredoxin AP3564_04805 210d3518424956e43097adb0606aeb27 284 SUPERFAMILY SSF110849 25 116 2.2E-29 T 13-10-2018 IPR036086 ParB/Sulfiredoxin superfamily AP3564_04805 210d3518424956e43097adb0606aeb27 284 Gene3D G3DSA:1.10.10.2830 101 215 3.0E-41 T 13-10-2018 AP3564_09465 0ca9df9b92ef04d2b9f9a1a2f3da48f1 313 Hamap MF_01937 1,4-dihydroxy-2-naphthoate octaprenyltransferase [menA]. 18 305 19.882 T 13-10-2018 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase GO:0009234|GO:0016021|GO:0046428 KEGG: 00130+2.5.1.74|MetaCyc: PWY-5839|MetaCyc: PWY-5851|MetaCyc: PWY-5852|MetaCyc: PWY-5853|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 AP3564_09465 0ca9df9b92ef04d2b9f9a1a2f3da48f1 313 TIGRFAM TIGR00751 menA: 1,4-dihydroxy-2-naphthoate octaprenyltransferase 27 303 3.0E-42 T 13-10-2018 AP3564_09465 0ca9df9b92ef04d2b9f9a1a2f3da48f1 313 Pfam PF01040 UbiA prenyltransferase family 35 270 2.7E-37 T 13-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 AP3564_09465 0ca9df9b92ef04d2b9f9a1a2f3da48f1 313 PIRSF PIRSF005355 13 310 2.8E-87 T 13-10-2018 IPR026046 UbiA prenyltransferase domain containing protein 1 GO:0004659 Reactome: R-HSA-6806664 AP3564_10060 2379488982faf2042eb064e8b6ce4584 306 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 7 305 1.7E-136 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AP3564_10060 2379488982faf2042eb064e8b6ce4584 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 222 232 3.3E-31 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AP3564_10060 2379488982faf2042eb064e8b6ce4584 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 119 133 3.3E-31 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AP3564_10060 2379488982faf2042eb064e8b6ce4584 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 46 60 3.3E-31 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AP3564_10060 2379488982faf2042eb064e8b6ce4584 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 79 92 3.3E-31 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AP3564_10060 2379488982faf2042eb064e8b6ce4584 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 284 295 3.3E-31 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AP3564_10060 2379488982faf2042eb064e8b6ce4584 306 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 150 302 1.4E-60 T 13-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 AP3564_10060 2379488982faf2042eb064e8b6ce4584 306 Gene3D G3DSA:3.40.50.1370 7 132 1.3E-127 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AP3564_10060 2379488982faf2042eb064e8b6ce4584 306 SUPERFAMILY SSF53671 2 305 3.14E-114 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AP3564_10060 2379488982faf2042eb064e8b6ce4584 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 48 67 1.1E-26 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AP3564_10060 2379488982faf2042eb064e8b6ce4584 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 258 267 1.1E-26 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AP3564_10060 2379488982faf2042eb064e8b6ce4584 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 130 141 1.1E-26 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AP3564_10060 2379488982faf2042eb064e8b6ce4584 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 270 293 1.1E-26 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AP3564_10060 2379488982faf2042eb064e8b6ce4584 306 Gene3D G3DSA:3.40.50.1370 133 301 1.3E-127 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AP3564_10060 2379488982faf2042eb064e8b6ce4584 306 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 48 55 - T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AP3564_10060 2379488982faf2042eb064e8b6ce4584 306 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 6 306 81.977 T 13-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 AP3564_10060 2379488982faf2042eb064e8b6ce4584 306 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 7 143 2.4E-52 T 13-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 AP3564_18490 abcb2dcbe6078dfbe4d8b8eebdecab07 115 Pfam PF12438 Protein of unknown function (DUF3679) 7 62 7.0E-19 T 13-10-2018 IPR020534 Uncharacterised protein family YqxA AP3564_18490 abcb2dcbe6078dfbe4d8b8eebdecab07 115 ProDom PD072942 YQXA ORF79 1 96 3.0E-19 T 13-10-2018 IPR020534 Uncharacterised protein family YqxA AP3564_09105 accf364dab31755a7e85a3034d3b9b3b 330 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 265 287 6.1E-18 T 13-10-2018 AP3564_09105 accf364dab31755a7e85a3034d3b9b3b 330 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 156 174 6.1E-18 T 13-10-2018 AP3564_09105 accf364dab31755a7e85a3034d3b9b3b 330 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 6.1E-18 T 13-10-2018 AP3564_09105 accf364dab31755a7e85a3034d3b9b3b 330 SUPERFAMILY SSF51905 8 314 1.98E-41 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_09105 accf364dab31755a7e85a3034d3b9b3b 330 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 66 76 4.4E-23 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_09105 accf364dab31755a7e85a3034d3b9b3b 330 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 9 31 4.4E-23 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_09105 accf364dab31755a7e85a3034d3b9b3b 330 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 275 293 4.4E-23 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_09105 accf364dab31755a7e85a3034d3b9b3b 330 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 113 121 4.4E-23 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_09105 accf364dab31755a7e85a3034d3b9b3b 330 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 152 176 4.4E-23 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_09105 accf364dab31755a7e85a3034d3b9b3b 330 Gene3D G3DSA:3.50.50.60 7 304 4.8E-121 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_09105 accf364dab31755a7e85a3034d3b9b3b 330 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 302 1.1E-29 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AP3564_09105 accf364dab31755a7e85a3034d3b9b3b 330 Hamap MF_01685 Ferredoxin--NADP reductase. 7 328 45.235 T 13-10-2018 IPR022890 Ferredoxin--NADP reductase, type 2 GO:0004324|GO:0055114 KEGG: 00195+1.18.1.2|MetaCyc: PWY-101 AP3564_09105 accf364dab31755a7e85a3034d3b9b3b 330 Gene3D G3DSA:3.50.50.60 128 246 4.8E-121 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_19330 bc4a0a600a9a071ebdc4c8097b0f20a3 274 SUPERFAMILY SSF57716 223 273 2.82E-15 T 13-10-2018 AP3564_19330 bc4a0a600a9a071ebdc4c8097b0f20a3 274 SMART SM01232 134 226 2.1E-45 T 13-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 AP3564_19330 bc4a0a600a9a071ebdc4c8097b0f20a3 274 SUPERFAMILY SSF46946 134 223 2.62E-30 T 13-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 AP3564_19330 bc4a0a600a9a071ebdc4c8097b0f20a3 274 SMART SM00898 2 118 6.5E-46 T 13-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AP3564_19330 bc4a0a600a9a071ebdc4c8097b0f20a3 274 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 134 223 6.0E-33 T 13-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 AP3564_19330 bc4a0a600a9a071ebdc4c8097b0f20a3 274 Gene3D G3DSA:1.10.8.50 136 274 2.0E-48 T 13-10-2018 AP3564_19330 bc4a0a600a9a071ebdc4c8097b0f20a3 274 Pfam PF06827 Zinc finger found in FPG and IleRS 249 273 4.9E-8 T 13-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 AP3564_19330 bc4a0a600a9a071ebdc4c8097b0f20a3 274 SUPERFAMILY SSF81624 2 139 1.57E-40 T 13-10-2018 IPR035937 MutM-like, N-terminal AP3564_19330 bc4a0a600a9a071ebdc4c8097b0f20a3 274 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 117 1.6E-31 T 13-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AP3564_19330 bc4a0a600a9a071ebdc4c8097b0f20a3 274 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 274 43.922 T 13-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 AP3564_19330 bc4a0a600a9a071ebdc4c8097b0f20a3 274 ProSitePatterns PS01242 Zinc finger FPG-type signature. 249 273 - T 13-10-2018 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 AP3564_19330 bc4a0a600a9a071ebdc4c8097b0f20a3 274 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 273 3.6E-108 T 13-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 AP3564_19330 bc4a0a600a9a071ebdc4c8097b0f20a3 274 Gene3D G3DSA:3.20.190.10 2 132 2.9E-39 T 13-10-2018 IPR035937 MutM-like, N-terminal AP3564_01555 49122ed086908b804f745a8d921c0a93 196 Gene3D G3DSA:3.40.109.10 4 194 1.0E-50 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AP3564_01555 49122ed086908b804f745a8d921c0a93 196 SUPERFAMILY SSF55469 12 188 3.14E-47 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AP3564_01555 49122ed086908b804f745a8d921c0a93 196 Pfam PF00881 Nitroreductase family 78 158 3.1E-9 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 AP3564_01555 49122ed086908b804f745a8d921c0a93 196 Pfam PF00881 Nitroreductase family 19 74 1.8E-14 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 AP3564_04505 b4b3135c128739f9f9f6ebee3d573346 217 SUPERFAMILY SSF46689 12 76 3.59E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_04505 b4b3135c128739f9f9f6ebee3d573346 217 SUPERFAMILY SSF48498 100 215 2.92E-8 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AP3564_04505 b4b3135c128739f9f9f6ebee3d573346 217 Gene3D G3DSA:1.10.357.10 12 216 3.5E-38 T 13-10-2018 AP3564_04505 b4b3135c128739f9f9f6ebee3d573346 217 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 46 69 3.1E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_04505 b4b3135c128739f9f9f6ebee3d573346 217 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 25 38 3.1E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_04505 b4b3135c128739f9f9f6ebee3d573346 217 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 70 1.3E-18 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_05520 15738bcd705a767fb7665e690539854a 331 Gene3D G3DSA:3.30.420.40 15 328 5.0E-28 T 13-10-2018 AP3564_05520 15738bcd705a767fb7665e690539854a 331 Gene3D G3DSA:3.30.1490.300 85 143 5.0E-28 T 13-10-2018 AP3564_05520 15738bcd705a767fb7665e690539854a 331 Pfam PF11104 Type IV pilus assembly protein PilM; 28 187 6.1E-11 T 13-10-2018 IPR005883 Type IV pilus assembly protein PilM AP3564_05520 15738bcd705a767fb7665e690539854a 331 Gene3D G3DSA:3.30.420.40 183 302 5.0E-28 T 13-10-2018 AP3564_18670 79ba4f5a653493d32bfa3a51209bd2e9 217 Pfam PF07719 Tetratricopeptide repeat 5 33 5.1E-6 T 13-10-2018 IPR013105 Tetratricopeptide repeat 2 AP3564_18670 79ba4f5a653493d32bfa3a51209bd2e9 217 Pfam PF00515 Tetratricopeptide repeat 170 203 2.9E-8 T 13-10-2018 IPR001440 Tetratricopeptide repeat 1 GO:0005515 AP3564_18670 79ba4f5a653493d32bfa3a51209bd2e9 217 SMART SM00028 102 135 0.26 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AP3564_18670 79ba4f5a653493d32bfa3a51209bd2e9 217 SMART SM00028 68 101 0.43 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AP3564_18670 79ba4f5a653493d32bfa3a51209bd2e9 217 SMART SM00028 170 203 1.2E-6 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AP3564_18670 79ba4f5a653493d32bfa3a51209bd2e9 217 SMART SM00028 4 33 10.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AP3564_18670 79ba4f5a653493d32bfa3a51209bd2e9 217 SMART SM00028 136 169 1.7 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AP3564_18670 79ba4f5a653493d32bfa3a51209bd2e9 217 SMART SM00028 34 67 0.007 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AP3564_18670 79ba4f5a653493d32bfa3a51209bd2e9 217 Gene3D G3DSA:1.25.40.10 140 216 2.1E-17 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AP3564_18670 79ba4f5a653493d32bfa3a51209bd2e9 217 Pfam PF13432 Tetratricopeptide repeat 106 155 7.4E-7 T 13-10-2018 AP3564_18670 79ba4f5a653493d32bfa3a51209bd2e9 217 Pfam PF13424 Tetratricopeptide repeat 36 95 2.3E-8 T 13-10-2018 AP3564_18670 79ba4f5a653493d32bfa3a51209bd2e9 217 SUPERFAMILY SSF48452 6 211 2.58E-40 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AP3564_18670 79ba4f5a653493d32bfa3a51209bd2e9 217 Gene3D G3DSA:1.25.40.10 2 139 3.8E-33 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AP3564_11100 30bbf98b1846538996bbafc073bb68a8 133 PIRSF PIRSF003230 1 133 3.3E-23 T 13-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 AP3564_11100 30bbf98b1846538996bbafc073bb68a8 133 SUPERFAMILY SSF54637 3 131 1.75E-33 T 13-10-2018 IPR029069 HotDog domain superfamily AP3564_11100 30bbf98b1846538996bbafc073bb68a8 133 Gene3D G3DSA:3.10.129.10 2 133 8.9E-34 T 13-10-2018 AP3564_11100 30bbf98b1846538996bbafc073bb68a8 133 Pfam PF03061 Thioesterase superfamily 18 102 8.5E-12 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AP3564_19150 81dd8b06ea85c51114d1ff8f89e60c0b 590 Gene3D G3DSA:1.10.150.20 527 588 4.6E-24 T 13-10-2018 AP3564_19150 81dd8b06ea85c51114d1ff8f89e60c0b 590 SUPERFAMILY SSF46600 182 235 2.09E-14 T 13-10-2018 IPR036876 UVR domain superfamily AP3564_19150 81dd8b06ea85c51114d1ff8f89e60c0b 590 Gene3D G3DSA:4.10.860.10 195 232 1.2E-5 T 13-10-2018 AP3564_19150 81dd8b06ea85c51114d1ff8f89e60c0b 590 Gene3D G3DSA:3.30.420.340 365 523 1.1E-63 T 13-10-2018 IPR038476 UvrC homology region 2 superfamily AP3564_19150 81dd8b06ea85c51114d1ff8f89e60c0b 590 SMART SM00465 15 95 3.3E-22 T 13-10-2018 IPR000305 GIY-YIG endonuclease AP3564_19150 81dd8b06ea85c51114d1ff8f89e60c0b 590 Pfam PF01541 GIY-YIG catalytic domain 16 90 3.1E-10 T 13-10-2018 IPR000305 GIY-YIG endonuclease AP3564_19150 81dd8b06ea85c51114d1ff8f89e60c0b 590 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 5 570 2.4E-217 T 13-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 AP3564_19150 81dd8b06ea85c51114d1ff8f89e60c0b 590 SUPERFAMILY SSF47781 503 589 3.18E-23 T 13-10-2018 IPR010994 RuvA domain 2-like AP3564_19150 81dd8b06ea85c51114d1ff8f89e60c0b 590 Gene3D G3DSA:3.40.1440.10 1 99 3.9E-38 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 AP3564_19150 81dd8b06ea85c51114d1ff8f89e60c0b 590 Pfam PF02151 UvrB/uvrC motif 197 230 1.6E-9 T 13-10-2018 IPR001943 UVR domain GO:0005515 AP3564_19150 81dd8b06ea85c51114d1ff8f89e60c0b 590 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 372 523 4.7E-57 T 13-10-2018 IPR001162 UvrC family homology region AP3564_19150 81dd8b06ea85c51114d1ff8f89e60c0b 590 Hamap MF_00203 UvrABC system protein C [uvrC]. 2 587 28.735 T 13-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 AP3564_19150 81dd8b06ea85c51114d1ff8f89e60c0b 590 Pfam PF14520 Helix-hairpin-helix domain 539 585 6.6E-9 T 13-10-2018 AP3564_19150 81dd8b06ea85c51114d1ff8f89e60c0b 590 SUPERFAMILY SSF82771 14 97 1.57E-22 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 AP3564_10595 00e31caf95612be7cb26a17eccec780a 248 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 68 4.8E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_10595 00e31caf95612be7cb26a17eccec780a 248 SUPERFAMILY SSF64288 74 234 5.65E-38 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily AP3564_10595 00e31caf95612be7cb26a17eccec780a 248 Gene3D G3DSA:1.10.10.10 5 70 9.5E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_10595 00e31caf95612be7cb26a17eccec780a 248 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 58 8.0E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_10595 00e31caf95612be7cb26a17eccec780a 248 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 28 42 8.0E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_10595 00e31caf95612be7cb26a17eccec780a 248 TIGRFAM TIGR02404 trehalos_R_Bsub: trehalose operon repressor 5 236 1.7E-94 T 13-10-2018 IPR012770 Trehalose operon transcriptional repressor AP3564_10595 00e31caf95612be7cb26a17eccec780a 248 SUPERFAMILY SSF46785 4 72 9.24E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_10595 00e31caf95612be7cb26a17eccec780a 248 SMART SM00345 9 68 4.5E-15 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_10595 00e31caf95612be7cb26a17eccec780a 248 Pfam PF07702 UTRA domain 92 229 7.3E-28 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AP3564_10595 00e31caf95612be7cb26a17eccec780a 248 SMART SM00866 90 229 5.2E-23 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AP3564_10595 00e31caf95612be7cb26a17eccec780a 248 Gene3D G3DSA:3.40.1410.10 88 228 7.0E-28 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily AP3564_05335 c7b49a65218f0ada7e1d79c551e641fa 71 Pfam PF01381 Helix-turn-helix 10 64 2.7E-15 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AP3564_05335 c7b49a65218f0ada7e1d79c551e641fa 71 SUPERFAMILY SSF47413 4 69 3.84E-18 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AP3564_05335 c7b49a65218f0ada7e1d79c551e641fa 71 SMART SM00530 9 64 1.7E-15 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AP3564_05335 c7b49a65218f0ada7e1d79c551e641fa 71 Gene3D G3DSA:1.10.260.40 2 71 3.8E-19 T 13-10-2018 AP3564_03555 21c70bc086db14dc29437a8debfa9ece 262 Pfam PF01969 Protein of unknown function DUF111 5 259 6.2E-76 T 13-10-2018 IPR002822 Nickel insertion protein AP3564_19400 d6546c46cf27494da7e042be16915737 410 PIRSF PIRSF000106 43 407 8.3E-89 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AP3564_19400 d6546c46cf27494da7e042be16915737 410 PRINTS PR00072 Malic enzyme signature 187 203 7.1E-9 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AP3564_19400 d6546c46cf27494da7e042be16915737 410 PRINTS PR00072 Malic enzyme signature 156 172 7.1E-9 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AP3564_19400 d6546c46cf27494da7e042be16915737 410 PRINTS PR00072 Malic enzyme signature 77 99 7.1E-9 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AP3564_19400 d6546c46cf27494da7e042be16915737 410 SUPERFAMILY SSF51735 160 404 1.39E-85 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_19400 d6546c46cf27494da7e042be16915737 410 SMART SM00919 160 384 2.3E-137 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 AP3564_19400 d6546c46cf27494da7e042be16915737 410 Pfam PF03949 Malic enzyme, NAD binding domain 162 383 2.7E-26 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 AP3564_19400 d6546c46cf27494da7e042be16915737 410 Gene3D G3DSA:3.40.50.720 158 409 7.3E-91 T 13-10-2018 AP3564_19400 d6546c46cf27494da7e042be16915737 410 ProSitePatterns PS00331 Malic enzymes signature. 156 172 - T 13-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 AP3564_19400 d6546c46cf27494da7e042be16915737 410 Pfam PF00390 Malic enzyme, N-terminal domain 16 148 5.9E-31 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AP3564_19400 d6546c46cf27494da7e042be16915737 410 SMART SM01274 15 148 9.0E-89 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AP3564_19400 d6546c46cf27494da7e042be16915737 410 Gene3D G3DSA:3.40.50.10380 1 157 6.6E-77 T 13-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 AP3564_19400 d6546c46cf27494da7e042be16915737 410 SUPERFAMILY SSF53223 6 158 5.11E-58 T 13-10-2018 AP3564_04755 cc8c373b3f09801ba2391b67afadab26 456 SMART SM00382 203 392 0.0018 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_04755 cc8c373b3f09801ba2391b67afadab26 456 Pfam PF03796 DnaB-like helicase C terminal domain 186 441 4.0E-121 T 13-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 AP3564_04755 cc8c373b3f09801ba2391b67afadab26 456 Gene3D G3DSA:1.10.860.10 3 167 9.3E-66 T 13-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal AP3564_04755 cc8c373b3f09801ba2391b67afadab26 456 SUPERFAMILY SSF52540 184 434 2.93E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_04755 cc8c373b3f09801ba2391b67afadab26 456 Pfam PF00772 DnaB-like helicase N terminal domain 11 112 1.7E-35 T 13-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 AP3564_04755 cc8c373b3f09801ba2391b67afadab26 456 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 11 443 9.4E-190 T 13-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 AP3564_04755 cc8c373b3f09801ba2391b67afadab26 456 Gene3D G3DSA:3.40.50.300 168 455 4.7E-123 T 13-10-2018 AP3564_04755 cc8c373b3f09801ba2391b67afadab26 456 SUPERFAMILY SSF48024 9 120 7.85E-38 T 13-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 AP3564_13255 bca9c52a307d04c0f104a2a1a305f9cc 210 Pfam PF00293 NUDIX domain 43 136 1.8E-11 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AP3564_13255 bca9c52a307d04c0f104a2a1a305f9cc 210 Gene3D G3DSA:3.90.79.10 1 202 1.6E-45 T 13-10-2018 AP3564_13255 bca9c52a307d04c0f104a2a1a305f9cc 210 SUPERFAMILY SSF55811 25 196 4.06E-28 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AP3564_01360 ccf7a511169afbf9fab9a066edfae58f 252 Gene3D G3DSA:3.40.50.300 1 251 2.2E-70 T 13-10-2018 AP3564_01360 ccf7a511169afbf9fab9a066edfae58f 252 Pfam PF00005 ABC transporter 18 164 3.0E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_01360 ccf7a511169afbf9fab9a066edfae58f 252 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_01360 ccf7a511169afbf9fab9a066edfae58f 252 SUPERFAMILY SSF52540 2 226 3.34E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_01360 ccf7a511169afbf9fab9a066edfae58f 252 SMART SM00382 26 213 1.3E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_17135 3a6ca9c5e3669ce1ee4d21f50e2144bc 360 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 219 228 - T 13-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 AP3564_17135 3a6ca9c5e3669ce1ee4d21f50e2144bc 360 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 5 357 2.6E-116 T 13-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 AP3564_17135 3a6ca9c5e3669ce1ee4d21f50e2144bc 360 SUPERFAMILY SSF53383 4 359 9.28E-83 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_17135 3a6ca9c5e3669ce1ee4d21f50e2144bc 360 Gene3D G3DSA:3.40.640.10 43 267 5.6E-115 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_17135 3a6ca9c5e3669ce1ee4d21f50e2144bc 360 Pfam PF00155 Aminotransferase class I and II 29 354 8.3E-61 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AP3564_17135 3a6ca9c5e3669ce1ee4d21f50e2144bc 360 Gene3D G3DSA:3.90.1150.10 20 352 5.6E-115 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_17135 3a6ca9c5e3669ce1ee4d21f50e2144bc 360 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 2 359 61.693 T 13-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 AP3564_08565 a11b7d987b779775ea4ebf810556be20 245 SUPERFAMILY SSF51366 5 240 5.52E-70 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AP3564_08565 a11b7d987b779775ea4ebf810556be20 245 Gene3D G3DSA:3.20.20.70 1 243 5.8E-88 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_08565 a11b7d987b779775ea4ebf810556be20 245 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 6 237 1.5E-84 T 13-10-2018 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 AP3564_08565 a11b7d987b779775ea4ebf810556be20 245 Pfam PF00977 Histidine biosynthesis protein 6 233 3.1E-77 T 13-10-2018 IPR006062 Histidine biosynthesis GO:0000105 AP3564_08565 a11b7d987b779775ea4ebf810556be20 245 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 5 241 35.993 T 13-10-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 AP3564_11695 cba0a197e7e465f3fd5af0b0de386eca 259 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 5 57 2.1E-19 T 13-10-2018 IPR025713 Motility protein B, N-terminal domain AP3564_11695 cba0a197e7e465f3fd5af0b0de386eca 259 Pfam PF00691 OmpA family 143 243 7.2E-18 T 13-10-2018 IPR006665 OmpA-like domain AP3564_11695 cba0a197e7e465f3fd5af0b0de386eca 259 Gene3D G3DSA:3.30.1330.60 74 255 2.7E-48 T 13-10-2018 IPR036737 OmpA-like domain superfamily AP3564_11695 cba0a197e7e465f3fd5af0b0de386eca 259 SUPERFAMILY SSF103088 125 249 1.7E-30 T 13-10-2018 IPR036737 OmpA-like domain superfamily AP3564_00280 65e470dcff4ee9dac8761997fdb5f078 288 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 274 1.7E-37 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AP3564_07115 41f5f079e02aa53273729bcb1325ee10 271 Gene3D G3DSA:2.60.120.10 127 271 3.8E-60 T 13-10-2018 IPR014710 RmlC-like jelly roll fold AP3564_07115 41f5f079e02aa53273729bcb1325ee10 271 TIGRFAM TIGR04378 myo_inos_iolB: 5-deoxy-glucuronate isomerase 21 268 3.2E-106 T 13-10-2018 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30 AP3564_07115 41f5f079e02aa53273729bcb1325ee10 271 Pfam PF04962 KduI/IolB family 12 268 7.1E-105 T 13-10-2018 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 AP3564_07115 41f5f079e02aa53273729bcb1325ee10 271 SUPERFAMILY SSF51182 4 257 4.04E-73 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily AP3564_07115 41f5f079e02aa53273729bcb1325ee10 271 Gene3D G3DSA:2.60.120.10 18 126 6.3E-34 T 13-10-2018 IPR014710 RmlC-like jelly roll fold AP3564_07115 41f5f079e02aa53273729bcb1325ee10 271 PIRSF PIRSF036628 1 271 9.7E-113 T 13-10-2018 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30 AP3564_07115 41f5f079e02aa53273729bcb1325ee10 271 Hamap MF_01673 5-deoxy-glucuronate isomerase [iolB]. 1 271 61.136 T 13-10-2018 IPR023770 5-deoxy-glucuronate isomerase, Bacilli GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30 AP3564_03225 25bc3c2a3ff89826b78faa56ec116771 419 Pfam PF16491 CAAX prenyl protease N-terminal, five membrane helices 44 203 3.0E-20 T 13-10-2018 IPR032456 CAAX prenyl protease 1, N-terminal KEGG: 00900+3.4.24.84 AP3564_03225 25bc3c2a3ff89826b78faa56ec116771 419 Pfam PF01435 Peptidase family M48 207 415 4.3E-36 T 13-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AP3564_03225 25bc3c2a3ff89826b78faa56ec116771 419 Gene3D G3DSA:3.30.2010.10 203 285 2.2E-26 T 13-10-2018 AP3564_15850 a293d8107f09c91de21af7d03a9306ec 336 PRINTS PR00142 RecA protein signature 155 184 4.2E-86 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AP3564_15850 a293d8107f09c91de21af7d03a9306ec 336 PRINTS PR00142 RecA protein signature 287 304 4.2E-86 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AP3564_15850 a293d8107f09c91de21af7d03a9306ec 336 PRINTS PR00142 RecA protein signature 83 112 4.2E-86 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AP3564_15850 a293d8107f09c91de21af7d03a9306ec 336 PRINTS PR00142 RecA protein signature 117 146 4.2E-86 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AP3564_15850 a293d8107f09c91de21af7d03a9306ec 336 PRINTS PR00142 RecA protein signature 200 228 4.2E-86 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AP3564_15850 a293d8107f09c91de21af7d03a9306ec 336 PRINTS PR00142 RecA protein signature 233 262 4.2E-86 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AP3564_15850 a293d8107f09c91de21af7d03a9306ec 336 SUPERFAMILY SSF52540 3 257 3.11E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_15850 a293d8107f09c91de21af7d03a9306ec 336 SMART SM00382 47 218 1.5E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_15850 a293d8107f09c91de21af7d03a9306ec 336 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 1 313 4.9E-174 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AP3564_15850 a293d8107f09c91de21af7d03a9306ec 336 Gene3D G3DSA:3.30.250.10 258 332 1.6E-29 T 13-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal AP3564_15850 a293d8107f09c91de21af7d03a9306ec 336 Gene3D G3DSA:3.40.50.300 16 257 2.8E-82 T 13-10-2018 AP3564_15850 a293d8107f09c91de21af7d03a9306ec 336 ProSitePatterns PS00321 recA signature. 203 211 - T 13-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 AP3564_15850 a293d8107f09c91de21af7d03a9306ec 336 Pfam PF00154 recA bacterial DNA recombination protein 2 258 2.9E-145 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AP3564_15850 a293d8107f09c91de21af7d03a9306ec 336 SUPERFAMILY SSF54752 258 317 1.44E-22 T 13-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal AP3564_15850 a293d8107f09c91de21af7d03a9306ec 336 Hamap MF_00268 Protein RecA [recA]. 1 319 52.309 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AP3564_08370 05a2f8b8ad4797c9285affc27e133aa7 183 Gene3D G3DSA:3.30.160.100 1 102 4.7E-32 T 13-10-2018 IPR036567 Ribosome hibernation promotion factor-like AP3564_08370 05a2f8b8ad4797c9285affc27e133aa7 183 Pfam PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus 123 178 2.5E-29 T 13-10-2018 IPR032528 Sigma 54 modulation/S30EA ribosomal protein, C-terminal AP3564_08370 05a2f8b8ad4797c9285affc27e133aa7 183 Hamap MF_00839 Ribosome hibernation promoting factor [hpf]. 1 182 25.959 T 13-10-2018 IPR034694 Ribosome hibernation promoting factor, long/plastid AP3564_08370 05a2f8b8ad4797c9285affc27e133aa7 183 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 95 8.8E-32 T 13-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 AP3564_08370 05a2f8b8ad4797c9285affc27e133aa7 183 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 102 2.7E-35 T 13-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 AP3564_08370 05a2f8b8ad4797c9285affc27e133aa7 183 Gene3D G3DSA:3.30.505.50 136 182 9.2E-28 T 13-10-2018 IPR038416 Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamily AP3564_08370 05a2f8b8ad4797c9285affc27e133aa7 183 SUPERFAMILY SSF69754 1 102 3.01E-33 T 13-10-2018 IPR036567 Ribosome hibernation promotion factor-like AP3564_10385 1878e9c55fb6cfbcd357b646fca4dad0 250 SUPERFAMILY SSF46689 145 193 1.16E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_10385 1878e9c55fb6cfbcd357b646fca4dad0 250 SUPERFAMILY SSF52172 3 122 9.11E-26 T 13-10-2018 IPR011006 CheY-like superfamily AP3564_10385 1878e9c55fb6cfbcd357b646fca4dad0 250 SMART SM00342 160 243 8.4E-31 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AP3564_10385 1878e9c55fb6cfbcd357b646fca4dad0 250 SUPERFAMILY SSF46689 196 247 4.03E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_10385 1878e9c55fb6cfbcd357b646fca4dad0 250 Pfam PF12833 Helix-turn-helix domain 167 244 1.6E-22 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AP3564_10385 1878e9c55fb6cfbcd357b646fca4dad0 250 SMART SM00448 2 116 1.1E-16 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_10385 1878e9c55fb6cfbcd357b646fca4dad0 250 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 197 239 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AP3564_10385 1878e9c55fb6cfbcd357b646fca4dad0 250 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 227 243 1.0E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AP3564_10385 1878e9c55fb6cfbcd357b646fca4dad0 250 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 212 227 1.0E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AP3564_10385 1878e9c55fb6cfbcd357b646fca4dad0 250 Pfam PF00072 Response regulator receiver domain 4 115 1.2E-19 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_10385 1878e9c55fb6cfbcd357b646fca4dad0 250 Gene3D G3DSA:3.40.50.2300 2 136 1.8E-26 T 13-10-2018 AP3564_10385 1878e9c55fb6cfbcd357b646fca4dad0 250 Gene3D G3DSA:1.10.10.60 194 247 2.6E-17 T 13-10-2018 AP3564_10385 1878e9c55fb6cfbcd357b646fca4dad0 250 Gene3D G3DSA:1.10.10.60 137 193 1.8E-18 T 13-10-2018 AP3564_01435 b1ac68b43ce3d3ca7aef9099a5bf9a4f 326 Pfam PF13379 NMT1-like family 38 258 3.4E-42 T 13-10-2018 AP3564_01435 b1ac68b43ce3d3ca7aef9099a5bf9a4f 326 SUPERFAMILY SSF53850 40 252 9.53E-47 T 13-10-2018 AP3564_01435 b1ac68b43ce3d3ca7aef9099a5bf9a4f 326 Gene3D G3DSA:3.40.190.10 43 316 7.7E-103 T 13-10-2018 AP3564_01435 b1ac68b43ce3d3ca7aef9099a5bf9a4f 326 Gene3D G3DSA:3.40.190.10 120 215 7.7E-103 T 13-10-2018 AP3564_01435 b1ac68b43ce3d3ca7aef9099a5bf9a4f 326 SMART SM00062 42 269 0.0013 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AP3564_09505 3ea352138f4c410c2138b25c7460f445 157 Gene3D G3DSA:3.30.1360.80 1 157 2.9E-62 T 13-10-2018 IPR037005 S-ribosylhomocysteinase (LuxS) superfamily GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AP3564_09505 3ea352138f4c410c2138b25c7460f445 157 Pfam PF02664 S-Ribosylhomocysteinase (LuxS) 4 151 3.9E-53 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AP3564_09505 3ea352138f4c410c2138b25c7460f445 157 PIRSF PIRSF006160 1 157 1.8E-63 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AP3564_09505 3ea352138f4c410c2138b25c7460f445 157 SUPERFAMILY SSF63411 4 151 1.1E-60 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AP3564_09505 3ea352138f4c410c2138b25c7460f445 157 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 5 23 2.5E-41 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AP3564_09505 3ea352138f4c410c2138b25c7460f445 157 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 28 46 2.5E-41 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AP3564_09505 3ea352138f4c410c2138b25c7460f445 157 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 49 67 2.5E-41 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AP3564_09505 3ea352138f4c410c2138b25c7460f445 157 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 119 138 2.5E-41 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AP3564_09505 3ea352138f4c410c2138b25c7460f445 157 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 78 96 2.5E-41 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AP3564_09505 3ea352138f4c410c2138b25c7460f445 157 Hamap MF_00091 S-ribosylhomocysteine lyase [luxS]. 1 157 33.793 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AP3564_09505 3ea352138f4c410c2138b25c7460f445 157 ProDom PD013172 LYASE SYNTHESIS LUXS AUTOINDUCER-2 PRODUCTION AUTOINDUCER S-RIBOSYLHOMOCYSTEINE AI-2 QUORUM SENSING 8 145 1.0E-69 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AP3564_01775 6b75c64ad00a72e0087663c2d14f7dd7 83 Gene3D G3DSA:3.10.20.90 3 83 1.2E-16 T 13-10-2018 AP3564_01775 6b75c64ad00a72e0087663c2d14f7dd7 83 Pfam PF08817 WXG100 protein secretion system (Wss), protein YukD 6 81 6.2E-10 T 13-10-2018 IPR024962 YukD-like AP3564_05095 134d376c103d8a87e42ae80363a79a4e 647 Hamap MF_01228 Methionine--tRNA ligase [metG]. 4 512 52.625 T 13-10-2018 IPR023457 Methionine-tRNA synthetase, type 2 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AP3564_05095 134d376c103d8a87e42ae80363a79a4e 647 Gene3D G3DSA:3.40.50.620 8 336 1.2E-155 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AP3564_05095 134d376c103d8a87e42ae80363a79a4e 647 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 8 513 1.9E-183 T 13-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AP3564_05095 134d376c103d8a87e42ae80363a79a4e 647 Pfam PF01588 Putative tRNA binding domain 553 645 1.2E-27 T 13-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 AP3564_05095 134d376c103d8a87e42ae80363a79a4e 647 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 17 26 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_05095 134d376c103d8a87e42ae80363a79a4e 647 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 524 647 3.4E-47 T 13-10-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AP3564_05095 134d376c103d8a87e42ae80363a79a4e 647 PRINTS PR01041 Methionyl-tRNA synthetase signature 90 101 2.3E-34 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AP3564_05095 134d376c103d8a87e42ae80363a79a4e 647 PRINTS PR01041 Methionyl-tRNA synthetase signature 351 362 2.3E-34 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AP3564_05095 134d376c103d8a87e42ae80363a79a4e 647 PRINTS PR01041 Methionyl-tRNA synthetase signature 226 237 2.3E-34 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AP3564_05095 134d376c103d8a87e42ae80363a79a4e 647 PRINTS PR01041 Methionyl-tRNA synthetase signature 42 56 2.3E-34 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AP3564_05095 134d376c103d8a87e42ae80363a79a4e 647 PRINTS PR01041 Methionyl-tRNA synthetase signature 259 274 2.3E-34 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AP3564_05095 134d376c103d8a87e42ae80363a79a4e 647 PRINTS PR01041 Methionyl-tRNA synthetase signature 10 23 2.3E-34 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AP3564_05095 134d376c103d8a87e42ae80363a79a4e 647 Pfam PF09334 tRNA synthetases class I (M) 8 152 1.0E-52 T 13-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_05095 134d376c103d8a87e42ae80363a79a4e 647 Pfam PF09334 tRNA synthetases class I (M) 157 363 1.4E-72 T 13-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_05095 134d376c103d8a87e42ae80363a79a4e 647 Gene3D G3DSA:1.10.730.10 341 510 1.2E-50 T 13-10-2018 AP3564_05095 134d376c103d8a87e42ae80363a79a4e 647 SUPERFAMILY SSF47323 353 560 9.35E-48 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_05095 134d376c103d8a87e42ae80363a79a4e 647 Gene3D G3DSA:2.170.220.10 119 228 1.2E-155 T 13-10-2018 AP3564_05095 134d376c103d8a87e42ae80363a79a4e 647 SUPERFAMILY SSF52374 5 350 5.36E-120 T 13-10-2018 AP3564_05095 134d376c103d8a87e42ae80363a79a4e 647 Gene3D G3DSA:2.40.50.140 537 647 1.6E-37 T 13-10-2018 AP3564_05095 134d376c103d8a87e42ae80363a79a4e 647 SUPERFAMILY SSF50249 546 646 2.23E-34 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_05095 134d376c103d8a87e42ae80363a79a4e 647 Pfam PF08264 Anticodon-binding domain of tRNA 394 523 6.7E-10 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 AP3564_02035 072aeaadae5caa8b746ae5dcb454e292 363 Pfam PF00106 short chain dehydrogenase 8 195 1.8E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_02035 072aeaadae5caa8b746ae5dcb454e292 363 Gene3D G3DSA:3.40.50.720 1 266 4.4E-49 T 13-10-2018 AP3564_02035 072aeaadae5caa8b746ae5dcb454e292 363 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 1.1E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_02035 072aeaadae5caa8b746ae5dcb454e292 363 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.1E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_02035 072aeaadae5caa8b746ae5dcb454e292 363 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 1.1E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_02035 072aeaadae5caa8b746ae5dcb454e292 363 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 1.1E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_02035 072aeaadae5caa8b746ae5dcb454e292 363 SUPERFAMILY SSF51735 2 262 6.13E-47 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_07800 b9427c7c5f9f15b83e5ab41523a4768b 330 Gene3D G3DSA:3.40.50.720 128 296 2.7E-126 T 13-10-2018 AP3564_07800 b9427c7c5f9f15b83e5ab41523a4768b 330 SUPERFAMILY SSF50129 4 147 8.67E-43 T 13-10-2018 IPR011032 GroES-like superfamily AP3564_07800 b9427c7c5f9f15b83e5ab41523a4768b 330 SMART SM00829 15 327 6.7E-7 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AP3564_07800 b9427c7c5f9f15b83e5ab41523a4768b 330 Gene3D G3DSA:3.90.180.10 19 328 2.7E-126 T 13-10-2018 AP3564_07800 b9427c7c5f9f15b83e5ab41523a4768b 330 SUPERFAMILY SSF51735 119 291 1.22E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_07800 b9427c7c5f9f15b83e5ab41523a4768b 330 TIGRFAM TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family 5 329 3.9E-147 T 13-10-2018 IPR014188 Acrylyl-CoA reductase AcuI AP3564_07800 b9427c7c5f9f15b83e5ab41523a4768b 330 Pfam PF00107 Zinc-binding dehydrogenase 161 276 3.9E-15 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AP3564_18535 299048a8b8b749e6f2de226d71cc09d1 274 Gene3D G3DSA:1.10.3730.10 161 262 3.4E-13 T 13-10-2018 AP3564_18535 299048a8b8b749e6f2de226d71cc09d1 274 SUPERFAMILY SSF48179 161 262 2.89E-17 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AP3564_18535 299048a8b8b749e6f2de226d71cc09d1 274 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 2 97 1.6E-18 T 13-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal AP3564_18535 299048a8b8b749e6f2de226d71cc09d1 274 Gene3D G3DSA:3.40.50.720 1 160 8.8E-35 T 13-10-2018 AP3564_18535 299048a8b8b749e6f2de226d71cc09d1 274 PIRSF PIRSF000193 1 266 8.4E-70 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AP3564_18535 299048a8b8b749e6f2de226d71cc09d1 274 SUPERFAMILY SSF51735 2 156 1.95E-25 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_18535 299048a8b8b749e6f2de226d71cc09d1 274 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 1 266 16.28 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AP3564_18535 299048a8b8b749e6f2de226d71cc09d1 274 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 164 258 1.9E-14 T 13-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AP3564_03850 7fce7a0c58f26c6b6be55ac12f5d0988 287 Pfam PF01551 Peptidase family M23 118 216 3.3E-25 T 13-10-2018 IPR016047 Peptidase M23 AP3564_03850 7fce7a0c58f26c6b6be55ac12f5d0988 287 SUPERFAMILY SSF51261 74 220 2.98E-27 T 13-10-2018 IPR011055 Duplicated hybrid motif AP3564_03850 7fce7a0c58f26c6b6be55ac12f5d0988 287 Gene3D G3DSA:2.70.70.10 75 232 6.9E-50 T 13-10-2018 IPR011055 Duplicated hybrid motif AP3564_09655 6911c3a842692d7dfdb7bb47e6863a4e 424 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 5 410 9.5E-147 T 13-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like AP3564_09655 6911c3a842692d7dfdb7bb47e6863a4e 424 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 156 174 3.6E-6 T 13-10-2018 AP3564_09655 6911c3a842692d7dfdb7bb47e6863a4e 424 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 3.6E-6 T 13-10-2018 AP3564_09655 6911c3a842692d7dfdb7bb47e6863a4e 424 Gene3D G3DSA:1.10.8.260 277 341 2.4E-127 T 13-10-2018 IPR023166 HI0933-like insert domain superfamily AP3564_09655 6911c3a842692d7dfdb7bb47e6863a4e 424 SUPERFAMILY SSF160996 193 359 4.45E-46 T 13-10-2018 AP3564_09655 6911c3a842692d7dfdb7bb47e6863a4e 424 Pfam PF03486 HI0933-like protein 3 411 6.9E-154 T 13-10-2018 AP3564_09655 6911c3a842692d7dfdb7bb47e6863a4e 424 SUPERFAMILY SSF51905 1 416 4.24E-63 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_09655 6911c3a842692d7dfdb7bb47e6863a4e 424 Gene3D G3DSA:2.40.30.10 192 358 2.4E-127 T 13-10-2018 AP3564_09655 6911c3a842692d7dfdb7bb47e6863a4e 424 Gene3D G3DSA:3.50.50.60 7 407 2.4E-127 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_09655 6911c3a842692d7dfdb7bb47e6863a4e 424 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 3.2E-9 T 13-10-2018 AP3564_09655 6911c3a842692d7dfdb7bb47e6863a4e 424 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 159 168 3.2E-9 T 13-10-2018 AP3564_07820 6d7b039d792507afd1a193aacb63013d 293 Pfam PF06725 3D domain 234 292 2.4E-18 T 13-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 AP3564_07820 6d7b039d792507afd1a193aacb63013d 293 SMART SM00257 73 116 4.8E-16 T 13-10-2018 IPR018392 LysM domain AP3564_07820 6d7b039d792507afd1a193aacb63013d 293 SMART SM00257 26 69 9.0E-17 T 13-10-2018 IPR018392 LysM domain AP3564_07820 6d7b039d792507afd1a193aacb63013d 293 SUPERFAMILY SSF50685 235 280 8.37E-7 T 13-10-2018 IPR036908 RlpA-like domain superfamily AP3564_07820 6d7b039d792507afd1a193aacb63013d 293 SUPERFAMILY SSF54106 25 68 6.15E-12 T 13-10-2018 AP3564_07820 6d7b039d792507afd1a193aacb63013d 293 Pfam PF01476 LysM domain 27 68 3.8E-14 T 13-10-2018 IPR018392 LysM domain AP3564_07820 6d7b039d792507afd1a193aacb63013d 293 Pfam PF01476 LysM domain 74 115 3.0E-15 T 13-10-2018 IPR018392 LysM domain AP3564_07820 6d7b039d792507afd1a193aacb63013d 293 Gene3D G3DSA:3.10.350.10 72 121 5.7E-20 T 13-10-2018 IPR036779 LysM domain superfamily AP3564_07820 6d7b039d792507afd1a193aacb63013d 293 Gene3D G3DSA:3.10.350.10 22 71 2.1E-19 T 13-10-2018 IPR036779 LysM domain superfamily AP3564_07820 6d7b039d792507afd1a193aacb63013d 293 Gene3D G3DSA:2.40.40.10 122 283 5.2E-5 T 13-10-2018 IPR036908 RlpA-like domain superfamily AP3564_07820 6d7b039d792507afd1a193aacb63013d 293 SUPERFAMILY SSF54106 73 115 2.22E-11 T 13-10-2018 AP3564_02330 059ee547de72fe77dc46a392b7f9b205 326 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 2 178 1.2E-27 T 13-10-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase AP3564_09780 5b653060b0e29cacbb6367c87cca39d9 530 PIRSF PIRSF001363 1 530 4.2E-263 T 13-10-2018 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AP3564_09780 5b653060b0e29cacbb6367c87cca39d9 530 TIGRFAM TIGR01344 malate_syn_A: malate synthase A 22 529 3.6E-254 T 13-10-2018 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AP3564_09780 5b653060b0e29cacbb6367c87cca39d9 530 ProSitePatterns PS00510 Malate synthase signature. 264 279 - T 13-10-2018 IPR019830 Malate synthase, conserved site GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AP3564_09780 5b653060b0e29cacbb6367c87cca39d9 530 Gene3D G3DSA:1.20.1220.12 408 529 8.0E-51 T 13-10-2018 AP3564_09780 5b653060b0e29cacbb6367c87cca39d9 530 Pfam PF01274 Malate synthase 13 529 6.0E-215 T 13-10-2018 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AP3564_09780 5b653060b0e29cacbb6367c87cca39d9 530 SUPERFAMILY SSF51645 7 529 1.12E-197 T 13-10-2018 IPR011076 Malate synthase-like superfamily GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AP3564_09780 5b653060b0e29cacbb6367c87cca39d9 530 Gene3D G3DSA:3.20.20.360 3 407 5.6E-197 T 13-10-2018 AP3564_04380 482e842f21b8beb23e3c4425c93f8cfb 339 SUPERFAMILY SSF52518 7 217 1.72E-70 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold AP3564_04380 482e842f21b8beb23e3c4425c93f8cfb 339 SMART SM00861 9 184 1.2E-64 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AP3564_04380 482e842f21b8beb23e3c4425c93f8cfb 339 Gene3D G3DSA:3.40.50.970 7 205 7.9E-84 T 13-10-2018 AP3564_04380 482e842f21b8beb23e3c4425c93f8cfb 339 SUPERFAMILY SSF52922 202 337 4.84E-42 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AP3564_04380 482e842f21b8beb23e3c4425c93f8cfb 339 Pfam PF02779 Transketolase, pyrimidine binding domain 12 181 9.7E-51 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AP3564_04380 482e842f21b8beb23e3c4425c93f8cfb 339 Pfam PF02780 Transketolase, C-terminal domain 207 329 1.4E-39 T 13-10-2018 IPR033248 Transketolase, C-terminal domain AP3564_04380 482e842f21b8beb23e3c4425c93f8cfb 339 Gene3D G3DSA:3.40.50.920 206 338 1.9E-47 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AP3564_04295 7ea17fdf62ce3427e04ff4baf819128a 240 Pfam PF00005 ABC transporter 17 165 4.8E-39 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_04295 7ea17fdf62ce3427e04ff4baf819128a 240 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_04295 7ea17fdf62ce3427e04ff4baf819128a 240 Gene3D G3DSA:3.40.50.300 1 240 2.3E-84 T 13-10-2018 AP3564_04295 7ea17fdf62ce3427e04ff4baf819128a 240 SUPERFAMILY SSF52540 1 235 4.82E-84 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_04295 7ea17fdf62ce3427e04ff4baf819128a 240 SMART SM00382 26 221 9.0E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_04295 7ea17fdf62ce3427e04ff4baf819128a 240 PIRSF PIRSF039085 1 240 2.9E-120 T 13-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AP3564_04735 8276abe591e1796eb6b24369df9ce984 237 Gene3D G3DSA:1.10.10.10 133 236 3.7E-42 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_04735 8276abe591e1796eb6b24369df9ce984 237 SUPERFAMILY SSF46894 128 231 6.12E-33 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AP3564_04735 8276abe591e1796eb6b24369df9ce984 237 Pfam PF00072 Response regulator receiver domain 6 115 3.7E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_04735 8276abe591e1796eb6b24369df9ce984 237 SMART SM00862 154 230 9.9E-29 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AP3564_04735 8276abe591e1796eb6b24369df9ce984 237 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 230 8.0E-28 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AP3564_04735 8276abe591e1796eb6b24369df9ce984 237 Gene3D G3DSA:3.40.50.2300 1 132 5.8E-40 T 13-10-2018 AP3564_04735 8276abe591e1796eb6b24369df9ce984 237 SMART SM00448 4 114 1.5E-46 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_04735 8276abe591e1796eb6b24369df9ce984 237 SUPERFAMILY SSF52172 2 128 1.85E-43 T 13-10-2018 IPR011006 CheY-like superfamily AP3564_07345 c35dd8ae692933cf4017da593401067e 484 SUPERFAMILY SSF46785 10 84 1.77E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_07345 c35dd8ae692933cf4017da593401067e 484 Gene3D G3DSA:1.10.10.10 1 77 2.5E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_07345 c35dd8ae692933cf4017da593401067e 484 Pfam PF00155 Aminotransferase class I and II 130 469 2.6E-33 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AP3564_07345 c35dd8ae692933cf4017da593401067e 484 SMART SM00345 17 76 4.5E-18 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_07345 c35dd8ae692933cf4017da593401067e 484 Gene3D G3DSA:3.90.1150.10 111 473 3.6E-94 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_07345 c35dd8ae692933cf4017da593401067e 484 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 76 6.1E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_07345 c35dd8ae692933cf4017da593401067e 484 SUPERFAMILY SSF53383 95 476 1.48E-85 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_07345 c35dd8ae692933cf4017da593401067e 484 Gene3D G3DSA:3.40.640.10 149 370 3.6E-94 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_12955 71a463b2bb3148f30946783a6129751e 200 SUPERFAMILY SSF48317 5 197 2.35E-38 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily AP3564_12955 71a463b2bb3148f30946783a6129751e 200 Gene3D G3DSA:1.20.144.10 113 200 6.0E-27 T 13-10-2018 AP3564_12955 71a463b2bb3148f30946783a6129751e 200 Gene3D G3DSA:1.20.144.10 1 112 1.7E-10 T 13-10-2018 AP3564_12955 71a463b2bb3148f30946783a6129751e 200 SMART SM00014 81 191 8.2E-28 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AP3564_12955 71a463b2bb3148f30946783a6129751e 200 Pfam PF01569 PAP2 superfamily 91 196 2.8E-23 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AP3564_02520 20d6ea6ae3be46a4979073897d8c3dcb 79 Pfam PF00589 Phage integrase family 10 58 1.4E-10 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AP3564_02520 20d6ea6ae3be46a4979073897d8c3dcb 79 Gene3D G3DSA:1.10.443.10 3 70 3.6E-19 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AP3564_02520 20d6ea6ae3be46a4979073897d8c3dcb 79 SUPERFAMILY SSF56349 8 66 7.06E-18 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AP3564_13410 c12f4499fc44509ae911f6a265f0f78b 191 Gene3D G3DSA:1.10.10.10 99 181 1.2E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_13410 c12f4499fc44509ae911f6a265f0f78b 191 SUPERFAMILY SSF88659 107 178 2.99E-15 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AP3564_13410 c12f4499fc44509ae911f6a265f0f78b 191 Pfam PF08281 Sigma-70, region 4 119 172 3.4E-14 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AP3564_13410 c12f4499fc44509ae911f6a265f0f78b 191 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 16 175 8.9E-28 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AP3564_13410 c12f4499fc44509ae911f6a265f0f78b 191 Pfam PF04542 Sigma-70 region 2 23 87 2.9E-13 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AP3564_13410 c12f4499fc44509ae911f6a265f0f78b 191 SUPERFAMILY SSF88946 2 95 8.11E-25 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AP3564_13410 c12f4499fc44509ae911f6a265f0f78b 191 Gene3D G3DSA:1.10.1740.10 1 84 3.5E-22 T 13-10-2018 AP3564_11445 aeff790cb46d7df78ddce9dd050cff30 487 Pfam PF00005 ABC transporter 18 167 8.0E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_11445 aeff790cb46d7df78ddce9dd050cff30 487 SMART SM00382 26 215 5.0E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_11445 aeff790cb46d7df78ddce9dd050cff30 487 Gene3D G3DSA:3.40.50.300 1 256 7.5E-71 T 13-10-2018 AP3564_11445 aeff790cb46d7df78ddce9dd050cff30 487 Pfam PF01955 Adenosylcobinamide amidohydrolase 284 472 7.5E-52 T 13-10-2018 IPR002808 Adenosylcobinamide amidohydrolase, CbiZ AP3564_11445 aeff790cb46d7df78ddce9dd050cff30 487 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_11445 aeff790cb46d7df78ddce9dd050cff30 487 SUPERFAMILY SSF52540 2 229 2.95E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_08315 dbc5e553d3a244775208ba6eaa7d1755 256 SMART SM00346 7 97 4.2E-21 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AP3564_08315 dbc5e553d3a244775208ba6eaa7d1755 256 Gene3D G3DSA:3.30.450.40 79 254 1.8E-49 T 13-10-2018 IPR029016 GAF-like domain superfamily AP3564_08315 dbc5e553d3a244775208ba6eaa7d1755 256 SUPERFAMILY SSF46785 8 80 2.18E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_08315 dbc5e553d3a244775208ba6eaa7d1755 256 Gene3D G3DSA:1.10.10.10 2 75 5.4E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_08315 dbc5e553d3a244775208ba6eaa7d1755 256 Pfam PF01614 Bacterial transcriptional regulator 129 248 3.0E-28 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal AP3564_08315 dbc5e553d3a244775208ba6eaa7d1755 256 Pfam PF09339 IclR helix-turn-helix domain 9 60 1.1E-13 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AP3564_08315 dbc5e553d3a244775208ba6eaa7d1755 256 SUPERFAMILY SSF55781 65 253 9.16E-46 T 13-10-2018 AP3564_02250 d6ec1ebb8eae80511fa0a498dd975ee9 390 Pfam PF07690 Major Facilitator Superfamily 8 304 5.6E-33 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AP3564_02250 d6ec1ebb8eae80511fa0a498dd975ee9 390 SUPERFAMILY SSF103473 4 380 4.58E-55 T 13-10-2018 IPR036259 MFS transporter superfamily AP3564_02250 d6ec1ebb8eae80511fa0a498dd975ee9 390 Gene3D G3DSA:1.20.1250.20 193 388 1.2E-14 T 13-10-2018 AP3564_02250 d6ec1ebb8eae80511fa0a498dd975ee9 390 Gene3D G3DSA:1.20.1250.20 3 191 5.4E-31 T 13-10-2018 AP3564_10770 52dfbaab54359c7ed384ffd1c18ed712 180 Pfam PF00692 dUTPase 67 157 2.8E-15 T 13-10-2018 IPR029054 dUTPase-like AP3564_10770 52dfbaab54359c7ed384ffd1c18ed712 180 Gene3D G3DSA:2.70.40.10 1 177 5.6E-63 T 13-10-2018 IPR036157 dUTPase-like superfamily AP3564_10770 52dfbaab54359c7ed384ffd1c18ed712 180 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 2 172 1.5E-60 T 13-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 AP3564_10770 52dfbaab54359c7ed384ffd1c18ed712 180 Hamap MF_00146 dCTP deaminase [dcd]. 1 172 31.56 T 13-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 AP3564_10770 52dfbaab54359c7ed384ffd1c18ed712 180 SUPERFAMILY SSF51283 1 175 3.4E-49 T 13-10-2018 IPR036157 dUTPase-like superfamily AP3564_02565 38f6c53b86071a0167a67a60b41e88aa 331 Gene3D G3DSA:3.30.1180.20 185 330 9.6E-56 T 13-10-2018 AP3564_02565 38f6c53b86071a0167a67a60b41e88aa 331 SUPERFAMILY SSF82549 11 330 9.94E-133 T 13-10-2018 AP3564_02565 38f6c53b86071a0167a67a60b41e88aa 331 Gene3D G3DSA:3.40.50.10440 12 184 2.9E-73 T 13-10-2018 AP3564_02565 38f6c53b86071a0167a67a60b41e88aa 331 TIGRFAM TIGR02363 dhaK1: dihydroxyacetone kinase, DhaK subunit 1 329 2.0E-160 T 13-10-2018 IPR012736 Dihydroxyacetone kinase DhaK, subunit 1 KEGG: 00561+2.7.1.121 AP3564_02565 38f6c53b86071a0167a67a60b41e88aa 331 Pfam PF02733 Dak1 domain 18 327 6.7E-138 T 13-10-2018 IPR004006 DhaK domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AP3564_05645 ef8f899646a4d9d5e1d2ee0117dd1397 217 TIGRFAM TIGR02859 spore_sigH: RNA polymerase sigma-H factor 15 211 8.6E-111 T 13-10-2018 IPR014218 RNA polymerase sigma-H type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AP3564_05645 ef8f899646a4d9d5e1d2ee0117dd1397 217 ProSitePatterns PS00622 LuxR-type HTH domain signature. 178 205 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_05645 ef8f899646a4d9d5e1d2ee0117dd1397 217 Pfam PF08281 Sigma-70, region 4 164 206 1.8E-8 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AP3564_05645 ef8f899646a4d9d5e1d2ee0117dd1397 217 PIRSF PIRSF002939 2 217 1.5E-108 T 13-10-2018 IPR016371 RNA polymerase sigma-H factor GO:0003677|GO:0006351|GO:0016987 AP3564_05645 ef8f899646a4d9d5e1d2ee0117dd1397 217 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 33 210 7.1E-25 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AP3564_05645 ef8f899646a4d9d5e1d2ee0117dd1397 217 SUPERFAMILY SSF88946 18 106 1.24E-23 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AP3564_05645 ef8f899646a4d9d5e1d2ee0117dd1397 217 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 61 74 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_05645 ef8f899646a4d9d5e1d2ee0117dd1397 217 Pfam PF04542 Sigma-70 region 2 37 106 6.9E-14 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AP3564_05645 ef8f899646a4d9d5e1d2ee0117dd1397 217 SUPERFAMILY SSF88659 124 210 5.89E-10 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AP3564_08070 527f534cf38ade4e1db8e5bcae0a9960 508 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 364 384 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AP3564_08070 527f534cf38ade4e1db8e5bcae0a9960 508 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 260 453 6.3E-35 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AP3564_08070 527f534cf38ade4e1db8e5bcae0a9960 508 SUPERFAMILY SSF53067 250 500 3.42E-65 T 13-10-2018 AP3564_08070 527f534cf38ade4e1db8e5bcae0a9960 508 PIRSF PIRSF000538 2 505 4.5E-147 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AP3564_08070 527f534cf38ade4e1db8e5bcae0a9960 508 Gene3D G3DSA:3.30.420.40 1 249 2.0E-86 T 13-10-2018 AP3564_08070 527f534cf38ade4e1db8e5bcae0a9960 508 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 133 145 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AP3564_08070 527f534cf38ade4e1db8e5bcae0a9960 508 SUPERFAMILY SSF53067 4 251 3.24E-74 T 13-10-2018 AP3564_08070 527f534cf38ade4e1db8e5bcae0a9960 508 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 5 248 4.8E-71 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AP3564_08070 527f534cf38ade4e1db8e5bcae0a9960 508 TIGRFAM TIGR01312 XylB: xylulokinase 9 495 5.2E-130 T 13-10-2018 IPR006000 Xylulokinase GO:0004856|GO:0005997 KEGG: 00040+2.7.1.17 AP3564_08070 527f534cf38ade4e1db8e5bcae0a9960 508 Gene3D G3DSA:3.30.420.40 250 508 5.3E-78 T 13-10-2018 AP3564_12830 228b33f4229e9928df15b042a15b500a 163 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 13 35 - T 13-10-2018 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-1474151|Reactome: R-HSA-196757|Reactome: R-HSA-539107 AP3564_12830 228b33f4229e9928df15b042a15b500a 163 Gene3D G3DSA:3.40.430.10 1 163 7.0E-62 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AP3564_12830 228b33f4229e9928df15b042a15b500a 163 SUPERFAMILY SSF53597 1 161 1.44E-61 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AP3564_12830 228b33f4229e9928df15b042a15b500a 163 PRINTS PR00070 Dihydrofolate reductase signature 40 51 4.3E-16 T 13-10-2018 AP3564_12830 228b33f4229e9928df15b042a15b500a 163 PRINTS PR00070 Dihydrofolate reductase signature 13 23 4.3E-16 T 13-10-2018 AP3564_12830 228b33f4229e9928df15b042a15b500a 163 PRINTS PR00070 Dihydrofolate reductase signature 93 107 4.3E-16 T 13-10-2018 AP3564_12830 228b33f4229e9928df15b042a15b500a 163 PRINTS PR00070 Dihydrofolate reductase signature 27 35 4.3E-16 T 13-10-2018 AP3564_12830 228b33f4229e9928df15b042a15b500a 163 PIRSF PIRSF000194 1 163 5.0E-64 T 13-10-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0046654|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614 AP3564_12830 228b33f4229e9928df15b042a15b500a 163 Pfam PF00186 Dihydrofolate reductase 1 161 2.7E-67 T 13-10-2018 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0046654|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 AP3564_18455 88426badf3ca9ed88e3ca8fdc3348a6f 311 SUPERFAMILY SSF53335 93 310 1.16E-44 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_18455 88426badf3ca9ed88e3ca8fdc3348a6f 311 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 3 305 2.0E-106 T 13-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 AP3564_18455 88426badf3ca9ed88e3ca8fdc3348a6f 311 Gene3D G3DSA:3.40.50.150 116 311 5.2E-62 T 13-10-2018 AP3564_18455 88426badf3ca9ed88e3ca8fdc3348a6f 311 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 2 311 4.3E-106 T 13-10-2018 AP3564_18455 88426badf3ca9ed88e3ca8fdc3348a6f 311 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 3 311 35.899 T 13-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 AP3564_18455 88426badf3ca9ed88e3ca8fdc3348a6f 311 PIRSF PIRSF000401 1 311 2.2E-109 T 13-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 AP3564_17200 81dfd2327df308e2ad872b036647fae7 241 Gene3D G3DSA:3.40.50.150 15 234 5.2E-69 T 13-10-2018 AP3564_17200 81dfd2327df308e2ad872b036647fae7 241 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 141 155 - T 13-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 AP3564_17200 81dfd2327df308e2ad872b036647fae7 241 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 20 35 - T 13-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 AP3564_17200 81dfd2327df308e2ad872b036647fae7 241 Pfam PF01209 ubiE/COQ5 methyltransferase family 1 233 3.1E-99 T 13-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 AP3564_17200 81dfd2327df308e2ad872b036647fae7 241 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 1 233 37.08 T 13-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 AP3564_17200 81dfd2327df308e2ad872b036647fae7 241 SUPERFAMILY SSF53335 3 231 1.08E-52 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_17200 81dfd2327df308e2ad872b036647fae7 241 TIGRFAM TIGR02752 MenG_heptapren: demethylmenaquinone methyltransferase 3 233 1.3E-134 T 13-10-2018 IPR014122 Demethylmenaquinone methyltransferase GO:0008168|GO:0009234 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 AP3564_17200 81dfd2327df308e2ad872b036647fae7 241 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 9 233 2.2E-83 T 13-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 AP3564_08750 fb5eb6ed1b684ee6cd57eb6335091930 71 Pfam PF09628 YvfG protein 3 70 4.0E-30 T 13-10-2018 IPR018590 Uncharacterised domain YvfG AP3564_08750 fb5eb6ed1b684ee6cd57eb6335091930 71 SUPERFAMILY SSF158388 3 69 1.2E-26 T 13-10-2018 IPR037247 YvfG domain superfamily AP3564_01525 36f62db8669a2156705c357031b0579c 157 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 4 147 3.5E-44 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I AP3564_01525 36f62db8669a2156705c357031b0579c 157 SMART SM00226 2 149 4.0E-57 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I AP3564_01525 36f62db8669a2156705c357031b0579c 157 Gene3D G3DSA:3.40.50.2300 1 156 2.4E-65 T 13-10-2018 AP3564_01525 36f62db8669a2156705c357031b0579c 157 SUPERFAMILY SSF52788 1 150 9.16E-53 T 13-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily AP3564_01525 36f62db8669a2156705c357031b0579c 157 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 4 21 5.9E-16 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AP3564_01525 36f62db8669a2156705c357031b0579c 157 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 47 63 5.9E-16 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AP3564_01525 36f62db8669a2156705c357031b0579c 157 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 123 138 5.9E-16 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AP3564_01525 36f62db8669a2156705c357031b0579c 157 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 81 96 5.9E-16 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AP3564_12395 11543ee06ccf49635caea96595402c92 84 SUPERFAMILY SSF103473 1 63 5.75E-10 T 13-10-2018 IPR036259 MFS transporter superfamily AP3564_12395 11543ee06ccf49635caea96595402c92 84 Gene3D G3DSA:1.20.1250.20 1 70 5.4E-10 T 13-10-2018 AP3564_12395 11543ee06ccf49635caea96595402c92 84 Pfam PF11700 Vacuole effluxer Atg22 like 1 64 6.1E-6 T 13-10-2018 IPR024671 Autophagy-related protein 22-like AP3564_01235 6a2bdeadc7e055e143ecf6b9791cdc40 392 PIRSF PIRSF005962 1 392 1.8E-137 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 AP3564_01235 6a2bdeadc7e055e143ecf6b9791cdc40 392 Gene3D G3DSA:3.30.70.360 184 298 2.7E-149 T 13-10-2018 AP3564_01235 6a2bdeadc7e055e143ecf6b9791cdc40 392 SUPERFAMILY SSF53187 6 390 1.31E-86 T 13-10-2018 AP3564_01235 6a2bdeadc7e055e143ecf6b9791cdc40 392 Pfam PF07687 Peptidase dimerisation domain 189 281 1.5E-11 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain AP3564_01235 6a2bdeadc7e055e143ecf6b9791cdc40 392 Gene3D G3DSA:3.40.630.10 16 375 2.7E-149 T 13-10-2018 AP3564_01235 6a2bdeadc7e055e143ecf6b9791cdc40 392 Pfam PF01546 Peptidase family M20/M25/M40 74 384 1.8E-32 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 AP3564_01235 6a2bdeadc7e055e143ecf6b9791cdc40 392 SUPERFAMILY SSF55031 184 302 4.19E-33 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain AP3564_01235 6a2bdeadc7e055e143ecf6b9791cdc40 392 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 16 377 5.2E-125 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 AP3564_18210 0fe4d9f81a252b07697022eb6ee41559 543 Gene3D G3DSA:1.20.58.220 445 542 3.9E-24 T 13-10-2018 IPR038078 PhoU-like domain superfamily AP3564_18210 0fe4d9f81a252b07697022eb6ee41559 543 Pfam PF01895 PhoU domain 349 434 1.9E-13 T 13-10-2018 IPR026022 PhoU domain AP3564_18210 0fe4d9f81a252b07697022eb6ee41559 543 Pfam PF01895 PhoU domain 453 537 1.4E-18 T 13-10-2018 IPR026022 PhoU domain AP3564_18210 0fe4d9f81a252b07697022eb6ee41559 543 TIGRFAM TIGR00704 NaPi_cotrn_rel: Na/Pi-cotransporter II-related protein 8 315 1.8E-75 T 13-10-2018 IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein GO:0016020 AP3564_18210 0fe4d9f81a252b07697022eb6ee41559 543 SUPERFAMILY SSF109755 336 539 6.28E-53 T 13-10-2018 AP3564_18210 0fe4d9f81a252b07697022eb6ee41559 543 Gene3D G3DSA:1.20.58.220 342 444 5.7E-16 T 13-10-2018 IPR038078 PhoU-like domain superfamily AP3564_18210 0fe4d9f81a252b07697022eb6ee41559 543 Pfam PF02690 Na+/Pi-cotransporter 147 261 3.0E-17 T 13-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 AP3564_18210 0fe4d9f81a252b07697022eb6ee41559 543 Pfam PF02690 Na+/Pi-cotransporter 18 153 2.6E-50 T 13-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 AP3564_02675 9b26da1868041cd2601b3ecede97f641 405 Gene3D G3DSA:2.40.50.100 1 98 3.7E-24 T 13-10-2018 AP3564_02675 9b26da1868041cd2601b3ecede97f641 405 SUPERFAMILY SSF51230 1 93 3.93E-25 T 13-10-2018 IPR011053 Single hybrid motif AP3564_02675 9b26da1868041cd2601b3ecede97f641 405 Gene3D G3DSA:4.10.320.10 102 161 7.7E-20 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AP3564_02675 9b26da1868041cd2601b3ecede97f641 405 SUPERFAMILY SSF47005 105 149 4.58E-13 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AP3564_02675 9b26da1868041cd2601b3ecede97f641 405 Pfam PF02817 e3 binding domain 110 145 5.1E-17 T 13-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 AP3564_02675 9b26da1868041cd2601b3ecede97f641 405 Gene3D G3DSA:3.30.559.10 162 402 8.5E-83 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 AP3564_02675 9b26da1868041cd2601b3ecede97f641 405 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 179 403 1.2E-77 T 13-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 AP3564_02675 9b26da1868041cd2601b3ecede97f641 405 Pfam PF00364 Biotin-requiring enzyme 4 76 3.8E-19 T 13-10-2018 IPR000089 Biotin/lipoyl attachment AP3564_02675 9b26da1868041cd2601b3ecede97f641 405 SUPERFAMILY SSF52777 179 403 1.02E-76 T 13-10-2018 AP3564_07435 9ce45293cc92aa4762ae1783d3c221ab 210 TIGRFAM TIGR01167 LPXTG_anchor: LPXTG cell wall anchor domain 171 202 5.6E-5 T 13-10-2018 AP3564_07435 9ce45293cc92aa4762ae1783d3c221ab 210 Pfam PF00746 LPXTG cell wall anchor motif 171 203 3.5E-4 T 13-10-2018 IPR019948 Gram-positive LPXTG cell wall anchor AP3564_07125 ddbb2f446d8b7c4473db8bf2c7c2d0a4 636 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 7 195 1.3E-28 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AP3564_07125 ddbb2f446d8b7c4473db8bf2c7c2d0a4 636 SUPERFAMILY SSF52518 3 209 4.91E-28 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold AP3564_07125 ddbb2f446d8b7c4473db8bf2c7c2d0a4 636 SUPERFAMILY SSF52518 418 625 4.42E-57 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold AP3564_07125 ddbb2f446d8b7c4473db8bf2c7c2d0a4 636 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 220 353 3.4E-32 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AP3564_07125 ddbb2f446d8b7c4473db8bf2c7c2d0a4 636 TIGRFAM TIGR04377 myo_inos_iolD: 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase 5 634 1.4E-271 T 13-10-2018 IPR030817 3,5/4-Trihydroxycyclohexa-1,2-dione hydrolase GO:0016823|GO:0019310|GO:0030976 KEGG: 00562+3.7.1.22 AP3564_07125 ddbb2f446d8b7c4473db8bf2c7c2d0a4 636 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 475 494 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AP3564_07125 ddbb2f446d8b7c4473db8bf2c7c2d0a4 636 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 439 591 5.6E-44 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AP3564_07125 ddbb2f446d8b7c4473db8bf2c7c2d0a4 636 Gene3D G3DSA:3.40.50.1220 212 399 3.1E-33 T 13-10-2018 AP3564_07125 ddbb2f446d8b7c4473db8bf2c7c2d0a4 636 Gene3D G3DSA:3.40.50.970 412 606 1.7E-49 T 13-10-2018 AP3564_07125 ddbb2f446d8b7c4473db8bf2c7c2d0a4 636 Hamap MF_01669 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase [iolD]. 1 636 59.573 T 13-10-2018 IPR023757 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase, Firmicutes GO:0000287|GO:0016787|GO:0019310|GO:0030976 KEGG: 00562+3.7.1.22 AP3564_07125 ddbb2f446d8b7c4473db8bf2c7c2d0a4 636 Gene3D G3DSA:3.40.50.970 2 206 3.4E-28 T 13-10-2018 AP3564_07125 ddbb2f446d8b7c4473db8bf2c7c2d0a4 636 SUPERFAMILY SSF52467 211 378 4.09E-38 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AP3564_07605 7feed3cfcf9986aaaf05624b5fc3477b 760 SMART SM00047 603 755 3.7E-45 T 13-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 AP3564_07605 7feed3cfcf9986aaaf05624b5fc3477b 760 Gene3D G3DSA:2.30.30.40 199 245 4.4E-5 T 13-10-2018 AP3564_07605 7feed3cfcf9986aaaf05624b5fc3477b 760 Gene3D G3DSA:2.30.30.40 271 321 4.8E-5 T 13-10-2018 AP3564_07605 7feed3cfcf9986aaaf05624b5fc3477b 760 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 616 735 2.4E-12 T 13-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 AP3564_07605 7feed3cfcf9986aaaf05624b5fc3477b 760 Gene3D G3DSA:2.30.30.40 498 562 8.0E-12 T 13-10-2018 AP3564_07605 7feed3cfcf9986aaaf05624b5fc3477b 760 SMART SM00287 122 184 35.0 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type AP3564_07605 7feed3cfcf9986aaaf05624b5fc3477b 760 SMART SM00287 192 250 16.0 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type AP3564_07605 7feed3cfcf9986aaaf05624b5fc3477b 760 SMART SM00287 264 327 5.4 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type AP3564_07605 7feed3cfcf9986aaaf05624b5fc3477b 760 SMART SM00287 503 567 1.8E-4 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type AP3564_07605 7feed3cfcf9986aaaf05624b5fc3477b 760 Pfam PF08239 Bacterial SH3 domain 512 558 7.2E-9 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type AP3564_07605 7feed3cfcf9986aaaf05624b5fc3477b 760 Gene3D G3DSA:1.10.530.10 611 754 1.1E-6 T 13-10-2018 AP3564_14260 db318da4259fb5fd1ec5f09daf61005e 70 SUPERFAMILY SSF51230 2 70 2.22E-22 T 13-10-2018 IPR011053 Single hybrid motif AP3564_14260 db318da4259fb5fd1ec5f09daf61005e 70 Pfam PF00364 Biotin-requiring enzyme 4 68 1.0E-19 T 13-10-2018 IPR000089 Biotin/lipoyl attachment AP3564_14260 db318da4259fb5fd1ec5f09daf61005e 70 Gene3D G3DSA:2.40.50.100 4 70 2.7E-25 T 13-10-2018 AP3564_13575 6ec03bd02a61ee56d8138be3b4873d17 697 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 384 400 4.9E-28 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AP3564_13575 6ec03bd02a61ee56d8138be3b4873d17 697 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 185 203 4.9E-28 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AP3564_13575 6ec03bd02a61ee56d8138be3b4873d17 697 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 484 498 4.9E-28 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AP3564_13575 6ec03bd02a61ee56d8138be3b4873d17 697 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 99 112 4.9E-28 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AP3564_13575 6ec03bd02a61ee56d8138be3b4873d17 697 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 302 311 4.9E-28 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AP3564_13575 6ec03bd02a61ee56d8138be3b4873d17 697 SMART SM00493 2 125 1.0E-19 T 13-10-2018 IPR006171 TOPRIM domain AP3564_13575 6ec03bd02a61ee56d8138be3b4873d17 697 Pfam PF01131 DNA topoisomerase 152 555 1.8E-130 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AP3564_13575 6ec03bd02a61ee56d8138be3b4873d17 697 Pfam PF01751 Toprim domain 4 132 7.3E-13 T 13-10-2018 IPR006171 TOPRIM domain AP3564_13575 6ec03bd02a61ee56d8138be3b4873d17 697 SMART SM00437 259 521 1.7E-78 T 13-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 AP3564_13575 6ec03bd02a61ee56d8138be3b4873d17 697 Gene3D G3DSA:1.10.290.10 268 398 7.9E-137 T 13-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 AP3564_13575 6ec03bd02a61ee56d8138be3b4873d17 697 TIGRFAM TIGR01056 topB: DNA topoisomerase III 1 684 7.1E-203 T 13-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 AP3564_13575 6ec03bd02a61ee56d8138be3b4873d17 697 Gene3D G3DSA:1.10.460.10 159 565 7.9E-137 T 13-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 AP3564_13575 6ec03bd02a61ee56d8138be3b4873d17 697 SUPERFAMILY SSF56712 1 596 3.4E-177 T 13-10-2018 IPR023405 DNA topoisomerase, type IA, core domain AP3564_13575 6ec03bd02a61ee56d8138be3b4873d17 697 Gene3D G3DSA:3.40.50.140 2 153 2.8E-49 T 13-10-2018 AP3564_13575 6ec03bd02a61ee56d8138be3b4873d17 697 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 585 619 2.9E-6 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 AP3564_13575 6ec03bd02a61ee56d8138be3b4873d17 697 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 624 656 0.13 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 AP3564_13575 6ec03bd02a61ee56d8138be3b4873d17 697 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 296 311 - T 13-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 AP3564_13575 6ec03bd02a61ee56d8138be3b4873d17 697 SMART SM00436 125 215 5.8E-38 T 13-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 AP3564_13575 6ec03bd02a61ee56d8138be3b4873d17 697 Gene3D G3DSA:2.70.20.10 209 468 7.9E-137 T 13-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 AP3564_04840 cf688d81eb74c09248b45253729845e9 222 Pfam PF14804 Jag N-terminus 7 55 2.8E-21 T 13-10-2018 IPR032782 Jag, N-terminal AP3564_04840 cf688d81eb74c09248b45253729845e9 222 Pfam PF01424 R3H domain 161 220 1.9E-16 T 13-10-2018 IPR001374 R3H domain GO:0003676 AP3564_04840 cf688d81eb74c09248b45253729845e9 222 SMART SM00393 143 222 6.8E-22 T 13-10-2018 IPR001374 R3H domain GO:0003676 AP3564_04840 cf688d81eb74c09248b45253729845e9 222 Gene3D G3DSA:3.30.1370.50 158 222 4.2E-28 T 13-10-2018 IPR036867 R3H domain superfamily GO:0003676 AP3564_04840 cf688d81eb74c09248b45253729845e9 222 Gene3D G3DSA:3.30.30.80 1 57 3.2E-20 T 13-10-2018 IPR038247 Jag, N-terminal domain superfamily AP3564_04840 cf688d81eb74c09248b45253729845e9 222 Pfam PF13083 KH domain 82 145 6.0E-16 T 13-10-2018 AP3564_04840 cf688d81eb74c09248b45253729845e9 222 Gene3D G3DSA:3.30.300.20 76 157 1.0E-28 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta AP3564_04840 cf688d81eb74c09248b45253729845e9 222 SUPERFAMILY SSF82708 164 221 1.57E-10 T 13-10-2018 IPR036867 R3H domain superfamily GO:0003676 AP3564_04840 cf688d81eb74c09248b45253729845e9 222 SMART SM01245 5 57 7.4E-23 T 13-10-2018 IPR032782 Jag, N-terminal AP3564_09055 3b7d956935026c950bdde6b21f8cbb09 319 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 5 318 2.0E-33 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 AP3564_09055 3b7d956935026c950bdde6b21f8cbb09 319 SUPERFAMILY SSF52283 4 135 3.97E-37 T 13-10-2018 AP3564_09055 3b7d956935026c950bdde6b21f8cbb09 319 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 109 287 9.8E-66 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AP3564_09055 3b7d956935026c950bdde6b21f8cbb09 319 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 149 176 - T 13-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 AP3564_09055 3b7d956935026c950bdde6b21f8cbb09 319 Gene3D G3DSA:3.40.50.720 6 312 4.4E-124 T 13-10-2018 AP3564_09055 3b7d956935026c950bdde6b21f8cbb09 319 SUPERFAMILY SSF51735 104 288 1.83E-60 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_09055 3b7d956935026c950bdde6b21f8cbb09 319 Gene3D G3DSA:3.40.50.720 99 286 4.4E-124 T 13-10-2018 AP3564_15270 c76b5efd5214571c08e15b851fd1b9ff 110 Gene3D G3DSA:1.10.287.1080 1 100 1.8E-35 T 13-10-2018 AP3564_15270 c76b5efd5214571c08e15b851fd1b9ff 110 Pfam PF12643 MazG-like family 28 109 3.8E-26 T 13-10-2018 IPR025984 dCTP pyrophosphatase 1 GO:0009143|GO:0047429 KEGG: 00240+3.6.1.12|Reactome: R-HSA-499943 AP3564_15270 c76b5efd5214571c08e15b851fd1b9ff 110 SUPERFAMILY SSF101386 1 108 3.05E-38 T 13-10-2018 AP3564_15270 c76b5efd5214571c08e15b851fd1b9ff 110 PIRSF PIRSF029826 1 109 3.3E-43 T 13-10-2018 IPR025984 dCTP pyrophosphatase 1 GO:0009143|GO:0047429 KEGG: 00240+3.6.1.12|Reactome: R-HSA-499943 AP3564_03170 f03d3448c4cd03b289f9ec970754af63 312 Gene3D G3DSA:3.40.50.1400 8 304 3.1E-109 T 13-10-2018 AP3564_03170 f03d3448c4cd03b289f9ec970754af63 312 ProSitePatterns PS00534 Ferrochelatase signature. 178 196 - T 13-10-2018 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 AP3564_03170 f03d3448c4cd03b289f9ec970754af63 312 SUPERFAMILY SSF53800 3 308 6.38E-94 T 13-10-2018 AP3564_03170 f03d3448c4cd03b289f9ec970754af63 312 Hamap MF_00323 Ferrochelatase [hemH]. 4 308 33.069 T 13-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 AP3564_03170 f03d3448c4cd03b289f9ec970754af63 312 Gene3D G3DSA:3.40.50.1400 148 289 3.1E-109 T 13-10-2018 AP3564_03170 f03d3448c4cd03b289f9ec970754af63 312 Pfam PF00762 Ferrochelatase 5 308 2.3E-88 T 13-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 AP3564_03170 f03d3448c4cd03b289f9ec970754af63 312 TIGRFAM TIGR00109 hemH: ferrochelatase 2 308 6.9E-103 T 13-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 AP3564_05955 76c536f2152e6cf127442ffadb3732c5 457 Pfam PF13701 Transposase DDE domain group 1 13 452 1.3E-32 T 13-10-2018 IPR025668 Transposase DDE domain AP3564_05955 76c536f2152e6cf127442ffadb3732c5 457 SUPERFAMILY SSF53098 301 422 6.14E-6 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_17180 18d9f21a6f108595ad9c9b56740dcd9a 390 ProSitePatterns PS00789 Chorismate synthase signature 3. 339 355 - T 13-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AP3564_17180 18d9f21a6f108595ad9c9b56740dcd9a 390 Pfam PF01264 Chorismate synthase 1 364 8.5E-126 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AP3564_17180 18d9f21a6f108595ad9c9b56740dcd9a 390 Hamap MF_00300 Chorismate synthase [aroC]. 1 372 37.141 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AP3564_17180 18d9f21a6f108595ad9c9b56740dcd9a 390 ProSitePatterns PS00787 Chorismate synthase signature 1. 7 22 - T 13-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AP3564_17180 18d9f21a6f108595ad9c9b56740dcd9a 390 PIRSF PIRSF001456 1 387 1.7E-132 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AP3564_17180 18d9f21a6f108595ad9c9b56740dcd9a 390 SUPERFAMILY SSF103263 1 389 4.32E-152 T 13-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AP3564_17180 18d9f21a6f108595ad9c9b56740dcd9a 390 TIGRFAM TIGR00033 aroC: chorismate synthase 1 369 5.2E-133 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AP3564_17180 18d9f21a6f108595ad9c9b56740dcd9a 390 ProSitePatterns PS00788 Chorismate synthase signature 2. 131 147 - T 13-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AP3564_17180 18d9f21a6f108595ad9c9b56740dcd9a 390 Gene3D G3DSA:3.60.150.10 1 390 3.9E-158 T 13-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AP3564_14185 a57c594f1ca7c61d4696de27176d64ea 73 SUPERFAMILY SSF47413 1 68 1.49E-19 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AP3564_14185 a57c594f1ca7c61d4696de27176d64ea 73 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 6 68 2.1E-24 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AP3564_14185 a57c594f1ca7c61d4696de27176d64ea 73 Gene3D G3DSA:1.10.260.40 6 73 1.4E-10 T 13-10-2018 AP3564_14185 a57c594f1ca7c61d4696de27176d64ea 73 SMART SM00530 6 62 2.6E-7 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AP3564_11500 c45d2f2ac6b1ec22db64524776b31a38 431 SMART SM01091 353 430 1.6E-19 T 13-10-2018 IPR005170 Transporter-associated domain AP3564_11500 c45d2f2ac6b1ec22db64524776b31a38 431 Gene3D G3DSA:3.10.580.10 195 346 1.3E-50 T 13-10-2018 AP3564_11500 c45d2f2ac6b1ec22db64524776b31a38 431 Gene3D G3DSA:3.30.465.10 347 428 1.8E-17 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AP3564_11500 c45d2f2ac6b1ec22db64524776b31a38 431 SUPERFAMILY SSF56176 351 427 2.59E-16 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AP3564_11500 c45d2f2ac6b1ec22db64524776b31a38 431 Pfam PF01595 Domain of unknown function DUF21 8 201 1.1E-47 T 13-10-2018 IPR002550 CNNM, transmembrane domain AP3564_11500 c45d2f2ac6b1ec22db64524776b31a38 431 SUPERFAMILY SSF54631 204 340 7.83E-31 T 13-10-2018 AP3564_11500 c45d2f2ac6b1ec22db64524776b31a38 431 Pfam PF00571 CBS domain 217 270 5.9E-7 T 13-10-2018 IPR000644 CBS domain AP3564_11500 c45d2f2ac6b1ec22db64524776b31a38 431 Pfam PF00571 CBS domain 287 337 6.5E-5 T 13-10-2018 IPR000644 CBS domain AP3564_11500 c45d2f2ac6b1ec22db64524776b31a38 431 Pfam PF03471 Transporter associated domain 355 428 2.1E-16 T 13-10-2018 IPR005170 Transporter-associated domain AP3564_16325 41521a33c655c33536655834f358ef3b 76 SUPERFAMILY SSF54814 10 59 3.53E-7 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 AP3564_16325 41521a33c655c33536655834f358ef3b 76 Pfam PF13083 KH domain 2 74 6.6E-23 T 13-10-2018 AP3564_16325 41521a33c655c33536655834f358ef3b 76 Gene3D G3DSA:3.30.300.20 1 67 1.2E-5 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta AP3564_16325 41521a33c655c33536655834f358ef3b 76 Hamap MF_00088 UPF0109 protein . 1 75 21.785 T 13-10-2018 IPR020627 Uncharacterised protein family UPF0109 AP3564_19040 effb698d2d054eaec5d6c5181c13caab 428 Gene3D G3DSA:3.30.70.1050 3 114 1.4E-31 T 13-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 AP3564_19040 effb698d2d054eaec5d6c5181c13caab 428 PIRSF PIRSF003095 1 428 1.8E-143 T 13-10-2018 IPR005215 Trigger factor GO:0015031 AP3564_19040 effb698d2d054eaec5d6c5181c13caab 428 Hamap MF_00303 Trigger factor [tig]. 1 427 24.938 T 13-10-2018 IPR005215 Trigger factor GO:0015031 AP3564_19040 effb698d2d054eaec5d6c5181c13caab 428 Gene3D G3DSA:1.10.3120.10 115 424 1.3E-100 T 13-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 AP3564_19040 effb698d2d054eaec5d6c5181c13caab 428 Pfam PF05697 Bacterial trigger factor protein (TF) 1 145 6.6E-45 T 13-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 AP3564_19040 effb698d2d054eaec5d6c5181c13caab 428 SUPERFAMILY SSF109998 250 425 2.62E-46 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily AP3564_19040 effb698d2d054eaec5d6c5181c13caab 428 SUPERFAMILY SSF102735 1 129 5.49E-39 T 13-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 AP3564_19040 effb698d2d054eaec5d6c5181c13caab 428 TIGRFAM TIGR00115 tig: trigger factor 12 421 9.5E-147 T 13-10-2018 IPR005215 Trigger factor GO:0015031 AP3564_19040 effb698d2d054eaec5d6c5181c13caab 428 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 264 422 5.8E-49 T 13-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 AP3564_19040 effb698d2d054eaec5d6c5181c13caab 428 SUPERFAMILY SSF54534 89 243 1.89E-37 T 13-10-2018 AP3564_19040 effb698d2d054eaec5d6c5181c13caab 428 Gene3D G3DSA:3.10.50.40 151 248 1.3E-100 T 13-10-2018 AP3564_19040 effb698d2d054eaec5d6c5181c13caab 428 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 159 239 1.7E-15 T 13-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain AP3564_11885 683ce38089433df6cccb5b06b61a9026 184 TIGRFAM TIGR00725 TIGR00725: TIGR00725 family protein 2 161 2.6E-45 T 13-10-2018 IPR005268 Conserved hypothetical protein CHP00725 AP3564_11885 683ce38089433df6cccb5b06b61a9026 184 Gene3D G3DSA:3.40.50.450 1 171 7.2E-39 T 13-10-2018 AP3564_11885 683ce38089433df6cccb5b06b61a9026 184 Pfam PF03641 Possible lysine decarboxylase 44 162 5.7E-7 T 13-10-2018 IPR031100 LOG family AP3564_11885 683ce38089433df6cccb5b06b61a9026 184 SUPERFAMILY SSF102405 2 165 8.55E-33 T 13-10-2018 AP3564_02265 4cfd9069fc1298298fb1be833ec90a81 413 Pfam PF13180 PDZ domain 307 405 6.6E-20 T 13-10-2018 IPR001478 PDZ domain GO:0005515 AP3564_02265 4cfd9069fc1298298fb1be833ec90a81 413 Gene3D G3DSA:2.40.10.10 190 309 5.8E-42 T 13-10-2018 AP3564_02265 4cfd9069fc1298298fb1be833ec90a81 413 PRINTS PR00834 HtrA/DegQ protease family signature 158 178 5.3E-37 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AP3564_02265 4cfd9069fc1298298fb1be833ec90a81 413 PRINTS PR00834 HtrA/DegQ protease family signature 199 223 5.3E-37 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AP3564_02265 4cfd9069fc1298298fb1be833ec90a81 413 PRINTS PR00834 HtrA/DegQ protease family signature 262 279 5.3E-37 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AP3564_02265 4cfd9069fc1298298fb1be833ec90a81 413 PRINTS PR00834 HtrA/DegQ protease family signature 353 365 5.3E-37 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AP3564_02265 4cfd9069fc1298298fb1be833ec90a81 413 PRINTS PR00834 HtrA/DegQ protease family signature 137 149 5.3E-37 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AP3564_02265 4cfd9069fc1298298fb1be833ec90a81 413 PRINTS PR00834 HtrA/DegQ protease family signature 240 257 5.3E-37 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AP3564_02265 4cfd9069fc1298298fb1be833ec90a81 413 Pfam PF13365 Trypsin-like peptidase domain 125 269 7.9E-31 T 13-10-2018 AP3564_02265 4cfd9069fc1298298fb1be833ec90a81 413 Gene3D G3DSA:2.30.42.10 310 411 1.2E-27 T 13-10-2018 AP3564_02265 4cfd9069fc1298298fb1be833ec90a81 413 SUPERFAMILY SSF50156 293 405 3.68E-21 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 AP3564_02265 4cfd9069fc1298298fb1be833ec90a81 413 SMART SM00228 307 396 7.9E-11 T 13-10-2018 IPR001478 PDZ domain GO:0005515 AP3564_02265 4cfd9069fc1298298fb1be833ec90a81 413 SUPERFAMILY SSF50494 83 303 2.67E-58 T 13-10-2018 IPR009003 Peptidase S1, PA clan AP3564_02265 4cfd9069fc1298298fb1be833ec90a81 413 Gene3D G3DSA:2.40.10.10 50 188 1.0E-26 T 13-10-2018 AP3564_12450 ef379c0cad2942955425afb76a26d81e 153 Gene3D G3DSA:1.10.3140.10 1 135 7.6E-45 T 13-10-2018 AP3564_12450 ef379c0cad2942955425afb76a26d81e 153 SUPERFAMILY SSF56645 1 143 3.3E-32 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AP3564_12450 ef379c0cad2942955425afb76a26d81e 153 Pfam PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal 4 143 1.4E-41 T 13-10-2018 IPR024674 HpaB/PvcC/4-BUDH N-terminal AP3564_08900 928c1680889afd01c119e7dbd1e8ee2c 391 SUPERFAMILY SSF53901 1 266 8.77E-78 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AP3564_08900 928c1680889afd01c119e7dbd1e8ee2c 391 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 389 4.9E-145 T 13-10-2018 IPR002155 Thiolase GO:0016747 AP3564_08900 928c1680889afd01c119e7dbd1e8ee2c 391 ProSitePatterns PS00737 Thiolases signature 2. 337 353 - T 13-10-2018 IPR020613 Thiolase, conserved site GO:0016747 AP3564_08900 928c1680889afd01c119e7dbd1e8ee2c 391 Gene3D G3DSA:3.40.47.10 5 274 8.0E-154 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AP3564_08900 928c1680889afd01c119e7dbd1e8ee2c 391 Pfam PF02803 Thiolase, C-terminal domain 268 389 1.5E-49 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 AP3564_08900 928c1680889afd01c119e7dbd1e8ee2c 391 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 13-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 AP3564_08900 928c1680889afd01c119e7dbd1e8ee2c 391 PIRSF PIRSF000429 1 391 5.0E-135 T 13-10-2018 IPR002155 Thiolase GO:0016747 AP3564_08900 928c1680889afd01c119e7dbd1e8ee2c 391 Pfam PF00108 Thiolase, N-terminal domain 5 260 9.1E-78 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 AP3564_08900 928c1680889afd01c119e7dbd1e8ee2c 391 SUPERFAMILY SSF53901 269 390 3.29E-44 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AP3564_08900 928c1680889afd01c119e7dbd1e8ee2c 391 Gene3D G3DSA:3.40.47.10 131 387 8.0E-154 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AP3564_08900 928c1680889afd01c119e7dbd1e8ee2c 391 ProSitePatterns PS00099 Thiolases active site. 372 385 - T 13-10-2018 IPR020610 Thiolase, active site GO:0016747 AP3564_17515 557b8dba9e74a1bd89bf23cadf1233c0 252 SUPERFAMILY SSF88946 14 105 5.49E-34 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AP3564_17515 557b8dba9e74a1bd89bf23cadf1233c0 252 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 33 250 2.0E-39 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AP3564_17515 557b8dba9e74a1bd89bf23cadf1233c0 252 PIRSF PIRSF000770 5 252 1.8E-38 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_17515 557b8dba9e74a1bd89bf23cadf1233c0 252 TIGRFAM TIGR02980 SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily 31 250 6.2E-88 T 13-10-2018 IPR014322 RNA polymerase sigma-B/F/G type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AP3564_17515 557b8dba9e74a1bd89bf23cadf1233c0 252 SUPERFAMILY SSF88659 171 250 1.05E-17 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AP3564_17515 557b8dba9e74a1bd89bf23cadf1233c0 252 Gene3D G3DSA:1.10.10.10 105 160 2.4E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_17515 557b8dba9e74a1bd89bf23cadf1233c0 252 Gene3D G3DSA:1.10.601.10 3 104 1.0E-27 T 13-10-2018 AP3564_17515 557b8dba9e74a1bd89bf23cadf1233c0 252 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 220 246 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_17515 557b8dba9e74a1bd89bf23cadf1233c0 252 PRINTS PR00046 Major sigma-70 factor signature 220 235 1.4E-11 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_17515 557b8dba9e74a1bd89bf23cadf1233c0 252 PRINTS PR00046 Major sigma-70 factor signature 85 93 1.4E-11 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_17515 557b8dba9e74a1bd89bf23cadf1233c0 252 PRINTS PR00046 Major sigma-70 factor signature 61 74 1.4E-11 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_17515 557b8dba9e74a1bd89bf23cadf1233c0 252 PRINTS PR00046 Major sigma-70 factor signature 203 215 1.4E-11 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_17515 557b8dba9e74a1bd89bf23cadf1233c0 252 PRINTS PR00046 Major sigma-70 factor signature 235 246 1.4E-11 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_17515 557b8dba9e74a1bd89bf23cadf1233c0 252 SUPERFAMILY SSF88659 109 184 9.59E-17 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AP3564_17515 557b8dba9e74a1bd89bf23cadf1233c0 252 Pfam PF04539 Sigma-70 region 3 115 187 3.1E-12 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 AP3564_17515 557b8dba9e74a1bd89bf23cadf1233c0 252 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 61 74 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_17515 557b8dba9e74a1bd89bf23cadf1233c0 252 Pfam PF04545 Sigma-70, region 4 199 247 1.3E-15 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 AP3564_17515 557b8dba9e74a1bd89bf23cadf1233c0 252 TIGRFAM TIGR02885 spore_sigF: RNA polymerase sigma-F factor 22 250 6.3E-113 T 13-10-2018 IPR014236 RNA polymerase sigma-F type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AP3564_17515 557b8dba9e74a1bd89bf23cadf1233c0 252 Pfam PF04542 Sigma-70 region 2 37 104 2.1E-18 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AP3564_17515 557b8dba9e74a1bd89bf23cadf1233c0 252 Gene3D G3DSA:1.10.10.10 179 251 3.7E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_14300 399017b46a4c1497130c4357130122ef 159 Gene3D G3DSA:2.40.30.70 4 149 1.0E-43 T 13-10-2018 IPR036414 YaeB, N-terminal domain superfamily AP3564_14300 399017b46a4c1497130c4357130122ef 159 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 1 136 2.8E-36 T 13-10-2018 IPR023370 YaeB-like, N-terminal domain AP3564_14300 399017b46a4c1497130c4357130122ef 159 Pfam PF01980 Uncharacterised protein family UPF0066 20 132 3.9E-37 T 13-10-2018 IPR023370 YaeB-like, N-terminal domain AP3564_14300 399017b46a4c1497130c4357130122ef 159 SUPERFAMILY SSF118196 1 151 3.4E-49 T 13-10-2018 IPR036413 YaeB-like superfamily AP3564_04065 e0dd64f8cb0c8523d39b19b0e73f9780 705 Pfam PF02754 Cysteine-rich domain 581 668 5.8E-17 T 13-10-2018 IPR004017 Cysteine-rich domain AP3564_04065 e0dd64f8cb0c8523d39b19b0e73f9780 705 Pfam PF02754 Cysteine-rich domain 466 537 3.4E-6 T 13-10-2018 IPR004017 Cysteine-rich domain AP3564_04065 e0dd64f8cb0c8523d39b19b0e73f9780 705 SUPERFAMILY SSF103501 7 238 3.14E-17 T 13-10-2018 IPR036197 NarG-like superfamily AP3564_04065 e0dd64f8cb0c8523d39b19b0e73f9780 705 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 371 382 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AP3564_04065 e0dd64f8cb0c8523d39b19b0e73f9780 705 Pfam PF13183 4Fe-4S dicluster domain 274 383 2.3E-12 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AP3564_04065 e0dd64f8cb0c8523d39b19b0e73f9780 705 SUPERFAMILY SSF46548 259 399 1.92E-18 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AP3564_04070 ac79807289c9b60a3f9d953dd9082e05 174 Pfam PF04542 Sigma-70 region 2 9 76 9.2E-12 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AP3564_04070 ac79807289c9b60a3f9d953dd9082e05 174 SUPERFAMILY SSF88946 9 88 7.46E-16 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AP3564_04070 ac79807289c9b60a3f9d953dd9082e05 174 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 9 161 8.4E-24 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AP3564_04070 ac79807289c9b60a3f9d953dd9082e05 174 SUPERFAMILY SSF88659 103 165 3.71E-13 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AP3564_04070 ac79807289c9b60a3f9d953dd9082e05 174 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 31 62 - T 13-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AP3564_04070 ac79807289c9b60a3f9d953dd9082e05 174 Gene3D G3DSA:1.10.10.10 90 168 8.7E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_04070 ac79807289c9b60a3f9d953dd9082e05 174 Gene3D G3DSA:1.10.1740.10 2 89 6.4E-13 T 13-10-2018 AP3564_04070 ac79807289c9b60a3f9d953dd9082e05 174 Pfam PF08281 Sigma-70, region 4 109 160 2.2E-15 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AP3564_09635 0d05f800fd976b8778ec83ac0f3add90 61 ProDom PD052690 CSE60 CYTOSOLIC YTEV LJ928 SPORULATION ORF85 PROPHAGE 4 60 3.0E-10 T 13-10-2018 IPR020296 Sporulation protein Cse60 AP3564_09635 0d05f800fd976b8778ec83ac0f3add90 61 Pfam PF10957 Sporulation protein Cse60 3 60 5.5E-31 T 13-10-2018 IPR020296 Sporulation protein Cse60 AP3564_16985 5afc0c48e4577e7e15712201ddd28026 394 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 92 112 1.0E-17 T 13-10-2018 AP3564_16985 5afc0c48e4577e7e15712201ddd28026 394 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 161 185 1.0E-17 T 13-10-2018 AP3564_16985 5afc0c48e4577e7e15712201ddd28026 394 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 228 252 1.0E-17 T 13-10-2018 AP3564_16985 5afc0c48e4577e7e15712201ddd28026 394 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 114 135 1.0E-17 T 13-10-2018 AP3564_16985 5afc0c48e4577e7e15712201ddd28026 394 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 197 220 1.0E-17 T 13-10-2018 AP3564_16985 5afc0c48e4577e7e15712201ddd28026 394 Gene3D G3DSA:3.90.1150.10 25 385 4.1E-145 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_16985 5afc0c48e4577e7e15712201ddd28026 394 Pfam PF00155 Aminotransferase class I and II 31 385 1.7E-82 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AP3564_16985 5afc0c48e4577e7e15712201ddd28026 394 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 234 247 - T 13-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 AP3564_16985 5afc0c48e4577e7e15712201ddd28026 394 Gene3D G3DSA:3.40.640.10 62 284 4.1E-145 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_16985 5afc0c48e4577e7e15712201ddd28026 394 SUPERFAMILY SSF53383 3 392 4.26E-121 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_18885 3aac3c1db3f61c13a31c6015914f4763 488 Pfam PF00575 S1 RNA binding domain 35 105 1.2E-6 T 13-10-2018 IPR003029 S1 domain GO:0003676 AP3564_18885 3aac3c1db3f61c13a31c6015914f4763 488 Pfam PF10150 Ribonuclease E/G family 121 381 4.0E-79 T 13-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 AP3564_18885 3aac3c1db3f61c13a31c6015914f4763 488 Gene3D G3DSA:2.40.50.140 28 122 5.0E-26 T 13-10-2018 AP3564_18885 3aac3c1db3f61c13a31c6015914f4763 488 SUPERFAMILY SSF50249 36 121 3.02E-16 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_18885 3aac3c1db3f61c13a31c6015914f4763 488 Gene3D G3DSA:3.40.1260.20 390 487 1.5E-8 T 13-10-2018 AP3564_18885 3aac3c1db3f61c13a31c6015914f4763 488 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 14 414 4.0E-114 T 13-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 AP3564_18885 3aac3c1db3f61c13a31c6015914f4763 488 SMART SM00316 34 117 2.6E-10 T 13-10-2018 IPR022967 RNA-binding domain, S1 AP3564_08475 1231aa83fc5bc2851eb5d624b2cedd08 387 Gene3D G3DSA:1.10.540.10 6 126 7.2E-21 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AP3564_08475 1231aa83fc5bc2851eb5d624b2cedd08 387 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 126 218 3.2E-14 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AP3564_08475 1231aa83fc5bc2851eb5d624b2cedd08 387 SUPERFAMILY SSF47203 236 381 4.83E-25 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AP3564_08475 1231aa83fc5bc2851eb5d624b2cedd08 387 PIRSF PIRSF016578 3 107 1.3E-8 T 13-10-2018 AP3564_08475 1231aa83fc5bc2851eb5d624b2cedd08 387 PIRSF PIRSF016578 138 387 2.9E-24 T 13-10-2018 AP3564_08475 1231aa83fc5bc2851eb5d624b2cedd08 387 Gene3D G3DSA:2.40.110.10 136 226 1.9E-21 T 13-10-2018 AP3564_08475 1231aa83fc5bc2851eb5d624b2cedd08 387 Gene3D G3DSA:1.20.140.10 239 380 9.5E-29 T 13-10-2018 AP3564_08475 1231aa83fc5bc2851eb5d624b2cedd08 387 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 245 362 8.0E-17 T 13-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain AP3564_08475 1231aa83fc5bc2851eb5d624b2cedd08 387 SUPERFAMILY SSF56645 24 226 1.7E-41 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AP3564_08475 1231aa83fc5bc2851eb5d624b2cedd08 387 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 23 97 1.1E-10 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AP3564_11230 fc0a986a796f04a78aee7281960d2bf9 266 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 106 126 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 AP3564_11230 fc0a986a796f04a78aee7281960d2bf9 266 Pfam PF00378 Enoyl-CoA hydratase/isomerase 16 265 6.1E-58 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AP3564_11230 fc0a986a796f04a78aee7281960d2bf9 266 Gene3D G3DSA:3.90.226.10 3 206 4.8E-76 T 13-10-2018 AP3564_11230 fc0a986a796f04a78aee7281960d2bf9 266 SUPERFAMILY SSF52096 10 265 1.32E-72 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AP3564_11230 fc0a986a796f04a78aee7281960d2bf9 266 Gene3D G3DSA:1.10.12.10 207 266 3.8E-28 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal AP3564_18170 8625746832a9038ba1923e6c4b6963cc 269 ProSitePatterns PS00211 ABC transporters family signature. 166 180 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_18170 8625746832a9038ba1923e6c4b6963cc 269 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 24 269 4.6E-128 T 13-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 AP3564_18170 8625746832a9038ba1923e6c4b6963cc 269 Pfam PF00005 ABC transporter 38 194 2.3E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_18170 8625746832a9038ba1923e6c4b6963cc 269 SUPERFAMILY SSF52540 15 256 6.53E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_18170 8625746832a9038ba1923e6c4b6963cc 269 Gene3D G3DSA:3.40.50.300 24 265 5.2E-64 T 13-10-2018 AP3564_18170 8625746832a9038ba1923e6c4b6963cc 269 SMART SM00382 47 241 1.6E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_10915 f3674d32dd605ff62118945ebd60bb5e 341 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 1 324 8.7E-92 T 13-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family AP3564_10915 f3674d32dd605ff62118945ebd60bb5e 341 Gene3D G3DSA:3.40.190.10 122 261 6.9E-91 T 13-10-2018 AP3564_10915 f3674d32dd605ff62118945ebd60bb5e 341 Gene3D G3DSA:3.40.190.10 36 324 6.9E-91 T 13-10-2018 AP3564_10915 f3674d32dd605ff62118945ebd60bb5e 341 SUPERFAMILY SSF53850 31 325 2.86E-63 T 13-10-2018 AP3564_10915 f3674d32dd605ff62118945ebd60bb5e 341 Pfam PF16868 NMT1-like family 36 324 3.9E-112 T 13-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family AP3564_08120 c746a5db2ef997ddd4b9e7a13ff686d8 551 TIGRFAM TIGR01234 L-ribulokinase: ribulokinase 5 543 5.7E-210 T 13-10-2018 IPR005929 Ribulokinase GO:0005524|GO:0008741|GO:0019569 KEGG: 00040+2.7.1.16 AP3564_08120 c746a5db2ef997ddd4b9e7a13ff686d8 551 Hamap MF_00520 Ribulokinase [araB]. 4 550 52.501 T 13-10-2018 IPR005929 Ribulokinase GO:0005524|GO:0008741|GO:0019569 KEGG: 00040+2.7.1.16 AP3564_08120 c746a5db2ef997ddd4b9e7a13ff686d8 551 PIRSF PIRSF000538 4 543 4.0E-71 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AP3564_08120 c746a5db2ef997ddd4b9e7a13ff686d8 551 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 291 489 2.4E-45 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AP3564_08120 c746a5db2ef997ddd4b9e7a13ff686d8 551 Gene3D G3DSA:3.30.420.40 1 281 6.3E-73 T 13-10-2018 AP3564_08120 c746a5db2ef997ddd4b9e7a13ff686d8 551 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 400 420 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AP3564_08120 c746a5db2ef997ddd4b9e7a13ff686d8 551 SUPERFAMILY SSF53067 5 284 1.9E-40 T 13-10-2018 AP3564_08120 c746a5db2ef997ddd4b9e7a13ff686d8 551 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 6 279 5.4E-20 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AP3564_08120 c746a5db2ef997ddd4b9e7a13ff686d8 551 Gene3D G3DSA:3.30.420.40 283 551 2.1E-86 T 13-10-2018 AP3564_08120 c746a5db2ef997ddd4b9e7a13ff686d8 551 SUPERFAMILY SSF53067 283 539 3.08E-59 T 13-10-2018 AP3564_04680 eb4d73cb4fb7596a80ab47314aa36191 108 SUPERFAMILY SSF81301 11 90 3.0E-8 T 13-10-2018 AP3564_04680 eb4d73cb4fb7596a80ab47314aa36191 108 Gene3D G3DSA:3.30.460.10 5 104 8.6E-8 T 13-10-2018 AP3564_00735 5b0474559ae1570d634c7c2160e255e3 432 PRINTS PR00149 Fumarate lyase superfamily signature 216 243 2.0E-27 T 13-10-2018 IPR000362 Fumarate lyase family AP3564_00735 5b0474559ae1570d634c7c2160e255e3 432 PRINTS PR00149 Fumarate lyase superfamily signature 261 277 2.0E-27 T 13-10-2018 IPR000362 Fumarate lyase family AP3564_00735 5b0474559ae1570d634c7c2160e255e3 432 PRINTS PR00149 Fumarate lyase superfamily signature 88 106 2.0E-27 T 13-10-2018 IPR000362 Fumarate lyase family AP3564_00735 5b0474559ae1570d634c7c2160e255e3 432 PRINTS PR00149 Fumarate lyase superfamily signature 133 151 2.0E-27 T 13-10-2018 IPR000362 Fumarate lyase family AP3564_00735 5b0474559ae1570d634c7c2160e255e3 432 Gene3D G3DSA:1.10.275.10 1 92 5.2E-40 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal AP3564_00735 5b0474559ae1570d634c7c2160e255e3 432 Gene3D G3DSA:1.20.200.10 93 348 2.6E-104 T 13-10-2018 AP3564_00735 5b0474559ae1570d634c7c2160e255e3 432 SUPERFAMILY SSF48557 3 427 1.38E-143 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 AP3564_00735 5b0474559ae1570d634c7c2160e255e3 432 PRINTS PR00145 Argininosuccinate lyase family signature 216 240 2.6E-10 T 13-10-2018 AP3564_00735 5b0474559ae1570d634c7c2160e255e3 432 PRINTS PR00145 Argininosuccinate lyase family signature 261 277 2.6E-10 T 13-10-2018 AP3564_00735 5b0474559ae1570d634c7c2160e255e3 432 PRINTS PR00145 Argininosuccinate lyase family signature 87 109 2.6E-10 T 13-10-2018 AP3564_00735 5b0474559ae1570d634c7c2160e255e3 432 PRINTS PR00145 Argininosuccinate lyase family signature 128 148 2.6E-10 T 13-10-2018 AP3564_00735 5b0474559ae1570d634c7c2160e255e3 432 SMART SM00998 349 429 1.4E-42 T 13-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AP3564_00735 5b0474559ae1570d634c7c2160e255e3 432 ProSitePatterns PS00163 Fumarate lyases signature. 261 270 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AP3564_00735 5b0474559ae1570d634c7c2160e255e3 432 Pfam PF10397 Adenylosuccinate lyase C-terminus 350 427 3.2E-28 T 13-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AP3564_00735 5b0474559ae1570d634c7c2160e255e3 432 Pfam PF00206 Lyase 6 286 1.8E-79 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal AP3564_00735 5b0474559ae1570d634c7c2160e255e3 432 Gene3D G3DSA:1.10.40.30 349 432 2.3E-36 T 13-10-2018 AP3564_00735 5b0474559ae1570d634c7c2160e255e3 432 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 1 427 1.9E-187 T 13-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AP3564_01140 7f2e25f0517d8640d4ca4a52aaa2a8cd 142 Pfam PF02566 OsmC-like protein 33 130 3.1E-17 T 13-10-2018 IPR003718 OsmC/Ohr family AP3564_01140 7f2e25f0517d8640d4ca4a52aaa2a8cd 142 SUPERFAMILY SSF82784 1 130 5.76E-32 T 13-10-2018 IPR036102 OsmC/Ohr superfamily AP3564_01140 7f2e25f0517d8640d4ca4a52aaa2a8cd 142 Gene3D G3DSA:3.30.300.20 1 133 1.8E-30 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta AP3564_00620 7346fa8110c71f9a5853544c59fce1ea 218 Pfam PF07729 FCD domain 82 192 3.9E-23 T 13-10-2018 IPR011711 GntR, C-terminal AP3564_00620 7346fa8110c71f9a5853544c59fce1ea 218 SUPERFAMILY SSF48008 77 211 4.18E-19 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AP3564_00620 7346fa8110c71f9a5853544c59fce1ea 218 Gene3D G3DSA:1.20.120.530 76 215 5.7E-25 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AP3564_00620 7346fa8110c71f9a5853544c59fce1ea 218 Gene3D G3DSA:1.10.10.10 1 75 5.6E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_00620 7346fa8110c71f9a5853544c59fce1ea 218 SMART SM00895 80 206 0.0015 T 13-10-2018 IPR011711 GntR, C-terminal AP3564_00620 7346fa8110c71f9a5853544c59fce1ea 218 SMART SM00345 12 70 1.4E-12 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_00620 7346fa8110c71f9a5853544c59fce1ea 218 SUPERFAMILY SSF46785 7 74 4.26E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_00620 7346fa8110c71f9a5853544c59fce1ea 218 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 70 3.1E-12 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_00580 d1720d3785b9c2d9d519d892560e06bc 474 Gene3D G3DSA:3.40.309.10 250 438 2.3E-162 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AP3564_00580 d1720d3785b9c2d9d519d892560e06bc 474 Gene3D G3DSA:3.40.605.10 25 459 2.3E-162 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AP3564_00580 d1720d3785b9c2d9d519d892560e06bc 474 Pfam PF00171 Aldehyde dehydrogenase family 17 468 9.7E-166 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AP3564_00580 d1720d3785b9c2d9d519d892560e06bc 474 SUPERFAMILY SSF53720 3 471 9.69E-153 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AP3564_09070 0c6f9f170bb5e09fe29ab20cd188d382 306 SUPERFAMILY SSF54211 6 157 5.69E-30 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AP3564_09070 0c6f9f170bb5e09fe29ab20cd188d382 306 Hamap MF_00384 Homoserine kinase [thrB]. 9 298 27.373 T 13-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 AP3564_09070 0c6f9f170bb5e09fe29ab20cd188d382 306 Pfam PF08544 GHMP kinases C terminal 207 279 1.1E-8 T 13-10-2018 IPR013750 GHMP kinase, C-terminal domain AP3564_09070 0c6f9f170bb5e09fe29ab20cd188d382 306 Gene3D G3DSA:3.30.230.10 5 164 9.5E-42 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AP3564_09070 0c6f9f170bb5e09fe29ab20cd188d382 306 PIRSF PIRSF000676 3 298 1.4E-83 T 13-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 AP3564_09070 0c6f9f170bb5e09fe29ab20cd188d382 306 Pfam PF00288 GHMP kinases N terminal domain 83 143 4.5E-10 T 13-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 AP3564_09070 0c6f9f170bb5e09fe29ab20cd188d382 306 Gene3D G3DSA:3.30.70.890 165 290 6.3E-32 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily AP3564_09070 0c6f9f170bb5e09fe29ab20cd188d382 306 TIGRFAM TIGR00191 thrB: homoserine kinase 7 296 1.3E-84 T 13-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 AP3564_09070 0c6f9f170bb5e09fe29ab20cd188d382 306 SUPERFAMILY SSF55060 163 287 3.08E-29 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily AP3564_09070 0c6f9f170bb5e09fe29ab20cd188d382 306 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 89 100 - T 13-10-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 AP3564_09070 0c6f9f170bb5e09fe29ab20cd188d382 306 PRINTS PR00958 Homoserine kinase signature 130 143 5.9E-35 T 13-10-2018 AP3564_09070 0c6f9f170bb5e09fe29ab20cd188d382 306 PRINTS PR00958 Homoserine kinase signature 168 185 5.9E-35 T 13-10-2018 AP3564_09070 0c6f9f170bb5e09fe29ab20cd188d382 306 PRINTS PR00958 Homoserine kinase signature 14 29 5.9E-35 T 13-10-2018 AP3564_09070 0c6f9f170bb5e09fe29ab20cd188d382 306 PRINTS PR00958 Homoserine kinase signature 248 263 5.9E-35 T 13-10-2018 AP3564_09070 0c6f9f170bb5e09fe29ab20cd188d382 306 PRINTS PR00958 Homoserine kinase signature 96 111 5.9E-35 T 13-10-2018 AP3564_00320 b65d681471efae5e593fd7d3bf380b6d 201 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 69 4.1E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_00320 b65d681471efae5e593fd7d3bf380b6d 201 ProSitePatterns PS01081 TetR-type HTH domain signature. 35 65 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AP3564_00320 b65d681471efae5e593fd7d3bf380b6d 201 SUPERFAMILY SSF46689 13 90 1.4E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_00320 b65d681471efae5e593fd7d3bf380b6d 201 SUPERFAMILY SSF48498 99 199 8.09E-12 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AP3564_00320 b65d681471efae5e593fd7d3bf380b6d 201 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 23 36 9.1E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_00320 b65d681471efae5e593fd7d3bf380b6d 201 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 44 67 9.1E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_00320 b65d681471efae5e593fd7d3bf380b6d 201 Gene3D G3DSA:1.10.357.10 8 200 1.7E-40 T 13-10-2018 AP3564_19385 53300ccb88c7620a244a0ff197210a86 319 SUPERFAMILY SSF53784 1 316 7.98E-123 T 13-10-2018 IPR035966 Phosphofructokinase superfamily GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AP3564_19385 53300ccb88c7620a244a0ff197210a86 319 ProSitePatterns PS00433 Phosphofructokinase signature. 243 261 - T 13-10-2018 IPR015912 Phosphofructokinase, conserved site GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AP3564_19385 53300ccb88c7620a244a0ff197210a86 319 Hamap MF_00339 ATP-dependent 6-phosphofructokinase [pfkA]. 1 318 49.49 T 13-10-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 AP3564_19385 53300ccb88c7620a244a0ff197210a86 319 Pfam PF00365 Phosphofructokinase 3 275 6.4E-114 T 13-10-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AP3564_19385 53300ccb88c7620a244a0ff197210a86 319 Gene3D G3DSA:3.40.50.460 142 251 8.6E-122 T 13-10-2018 AP3564_19385 53300ccb88c7620a244a0ff197210a86 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 93 109 7.6E-90 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AP3564_19385 53300ccb88c7620a244a0ff197210a86 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 6 25 7.6E-90 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AP3564_19385 53300ccb88c7620a244a0ff197210a86 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 239 261 7.6E-90 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AP3564_19385 53300ccb88c7620a244a0ff197210a86 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 176 193 7.6E-90 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AP3564_19385 53300ccb88c7620a244a0ff197210a86 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 120 137 7.6E-90 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AP3564_19385 53300ccb88c7620a244a0ff197210a86 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 158 174 7.6E-90 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AP3564_19385 53300ccb88c7620a244a0ff197210a86 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 138 156 7.6E-90 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AP3564_19385 53300ccb88c7620a244a0ff197210a86 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 31 44 7.6E-90 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AP3564_19385 53300ccb88c7620a244a0ff197210a86 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 212 224 7.6E-90 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AP3564_19385 53300ccb88c7620a244a0ff197210a86 319 PIRSF PIRSF000532 1 319 7.6E-125 T 13-10-2018 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 AP3564_19385 53300ccb88c7620a244a0ff197210a86 319 TIGRFAM TIGR02482 PFKA_ATP: 6-phosphofructokinase 3 299 1.5E-141 T 13-10-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 AP3564_19385 53300ccb88c7620a244a0ff197210a86 319 Gene3D G3DSA:3.40.50.450 3 278 8.6E-122 T 13-10-2018 AP3564_11010 b2bef683a2019993682266175a6f7b3f 339 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 3 326 8.7E-42 T 13-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AP3564_19105 4260755c54bcd96d4d1f0e1672287a70 256 Pfam PF01138 3' exoribonuclease family, domain 1 10 138 1.0E-22 T 13-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AP3564_19105 4260755c54bcd96d4d1f0e1672287a70 256 ProSitePatterns PS01277 Ribonuclease PH signature. 116 128 - T 13-10-2018 IPR018336 Ribonuclease PH, conserved site AP3564_19105 4260755c54bcd96d4d1f0e1672287a70 256 Gene3D G3DSA:3.30.230.70 1 247 4.8E-59 T 13-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AP3564_19105 4260755c54bcd96d4d1f0e1672287a70 256 SUPERFAMILY SSF54211 1 140 8.6E-43 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AP3564_19105 4260755c54bcd96d4d1f0e1672287a70 256 Pfam PF03725 3' exoribonuclease family, domain 2 159 225 9.6E-10 T 13-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AP3564_19105 4260755c54bcd96d4d1f0e1672287a70 256 Hamap MF_00564 Ribonuclease PH [rph]. 11 238 43.41 T 13-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 AP3564_19105 4260755c54bcd96d4d1f0e1672287a70 256 SUPERFAMILY SSF55666 153 244 3.4E-22 T 13-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AP3564_19105 4260755c54bcd96d4d1f0e1672287a70 256 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 2 237 3.8E-115 T 13-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 AP3564_16255 1933dea4bf72d79d048697f0f7d03c58 692 SMART SM00436 104 192 3.6E-51 T 13-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 AP3564_16255 1933dea4bf72d79d048697f0f7d03c58 692 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 279 302 - T 13-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 AP3564_16255 1933dea4bf72d79d048697f0f7d03c58 692 SUPERFAMILY SSF57783 575 614 1.02E-14 T 13-10-2018 AP3564_16255 1933dea4bf72d79d048697f0f7d03c58 692 SMART SM00493 3 103 4.0E-34 T 13-10-2018 IPR006171 TOPRIM domain AP3564_16255 1933dea4bf72d79d048697f0f7d03c58 692 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 370 386 1.1E-36 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AP3564_16255 1933dea4bf72d79d048697f0f7d03c58 692 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 162 180 1.1E-36 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AP3564_16255 1933dea4bf72d79d048697f0f7d03c58 692 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 293 302 1.1E-36 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AP3564_16255 1933dea4bf72d79d048697f0f7d03c58 692 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 77 90 1.1E-36 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AP3564_16255 1933dea4bf72d79d048697f0f7d03c58 692 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 474 488 1.1E-36 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AP3564_16255 1933dea4bf72d79d048697f0f7d03c58 692 Gene3D G3DSA:3.30.65.10 558 618 1.6E-15 T 13-10-2018 AP3564_16255 1933dea4bf72d79d048697f0f7d03c58 692 SUPERFAMILY SSF56712 4 590 6.15E-204 T 13-10-2018 IPR023405 DNA topoisomerase, type IA, core domain AP3564_16255 1933dea4bf72d79d048697f0f7d03c58 692 Gene3D G3DSA:3.40.50.140 1 134 1.9E-54 T 13-10-2018 AP3564_16255 1933dea4bf72d79d048697f0f7d03c58 692 Pfam PF01131 DNA topoisomerase 128 548 1.3E-139 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AP3564_16255 1933dea4bf72d79d048697f0f7d03c58 692 Hamap MF_00952 DNA topoisomerase 1 [topA]. 3 643 56.773 T 13-10-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 AP3564_16255 1933dea4bf72d79d048697f0f7d03c58 692 Gene3D G3DSA:2.70.20.10 184 458 1.5E-170 T 13-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 AP3564_16255 1933dea4bf72d79d048697f0f7d03c58 692 Pfam PF01751 Toprim domain 5 113 2.8E-30 T 13-10-2018 IPR006171 TOPRIM domain AP3564_16255 1933dea4bf72d79d048697f0f7d03c58 692 Gene3D G3DSA:1.10.460.10 135 551 1.5E-170 T 13-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 AP3564_16255 1933dea4bf72d79d048697f0f7d03c58 692 SMART SM00437 242 511 1.3E-131 T 13-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 AP3564_16255 1933dea4bf72d79d048697f0f7d03c58 692 Gene3D G3DSA:1.10.290.10 250 385 1.5E-170 T 13-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 AP3564_16255 1933dea4bf72d79d048697f0f7d03c58 692 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 619 656 1.0E-12 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 AP3564_16255 1933dea4bf72d79d048697f0f7d03c58 692 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 577 614 5.2E-17 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 AP3564_16255 1933dea4bf72d79d048697f0f7d03c58 692 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 659 690 6.8E-4 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 AP3564_16255 1933dea4bf72d79d048697f0f7d03c58 692 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 5 612 1.2E-267 T 13-10-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 AP3564_00425 522b556fbeb10872678c389160f231d4 181 Gene3D G3DSA:3.30.70.2050 101 172 1.6E-5 T 13-10-2018 AP3564_00425 522b556fbeb10872678c389160f231d4 181 SUPERFAMILY SSF160387 49 154 1.26E-28 T 13-10-2018 AP3564_00425 522b556fbeb10872678c389160f231d4 181 Pfam PF05573 NosL 18 144 5.2E-22 T 13-10-2018 IPR008719 Nitrous oxide reductase accessory protein NosL AP3564_03300 8227297c451e80388498577613dcfe8b 420 Gene3D G3DSA:3.10.290.10 327 420 5.9E-36 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AP3564_03300 8227297c451e80388498577613dcfe8b 420 Gene3D G3DSA:3.40.50.620 2 223 8.0E-91 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AP3564_03300 8227297c451e80388498577613dcfe8b 420 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 183 205 1.8E-30 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AP3564_03300 8227297c451e80388498577613dcfe8b 420 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 162 177 1.8E-30 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AP3564_03300 8227297c451e80388498577613dcfe8b 420 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 217 229 1.8E-30 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AP3564_03300 8227297c451e80388498577613dcfe8b 420 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 44 66 1.8E-30 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AP3564_03300 8227297c451e80388498577613dcfe8b 420 Pfam PF00579 tRNA synthetases class I (W and Y) 29 324 4.6E-94 T 13-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_03300 8227297c451e80388498577613dcfe8b 420 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 40 50 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_03300 8227297c451e80388498577613dcfe8b 420 Gene3D G3DSA:1.10.240.10 224 326 1.3E-43 T 13-10-2018 AP3564_03300 8227297c451e80388498577613dcfe8b 420 SUPERFAMILY SSF52374 3 324 1.9E-109 T 13-10-2018 AP3564_03300 8227297c451e80388498577613dcfe8b 420 SUPERFAMILY SSF55174 322 419 8.37E-27 T 13-10-2018 AP3564_03300 8227297c451e80388498577613dcfe8b 420 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 2 419 47.069 T 13-10-2018 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 AP3564_03300 8227297c451e80388498577613dcfe8b 420 Pfam PF01479 S4 domain 355 400 5.0E-10 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_03300 8227297c451e80388498577613dcfe8b 420 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 2 419 2.1E-146 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AP3564_03300 8227297c451e80388498577613dcfe8b 420 SMART SM00363 354 415 2.0E-8 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_01385 938406eedd3b20751b9b91ab2296b656 221 Gene3D G3DSA:3.90.1720.10 83 205 4.9E-10 T 13-10-2018 AP3564_01385 938406eedd3b20751b9b91ab2296b656 221 SUPERFAMILY SSF54001 85 217 5.4E-23 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily AP3564_01385 938406eedd3b20751b9b91ab2296b656 221 Pfam PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family 99 196 3.0E-12 T 13-10-2018 IPR024453 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family AP3564_05100 dd100f7f5d072913b5399eb7d6a215a3 255 Pfam PF01026 TatD related DNase 3 252 1.8E-89 T 13-10-2018 IPR001130 TatD family GO:0016788 AP3564_05100 dd100f7f5d072913b5399eb7d6a215a3 255 SUPERFAMILY SSF51556 1 254 5.53E-100 T 13-10-2018 IPR032466 Metal-dependent hydrolase AP3564_05100 dd100f7f5d072913b5399eb7d6a215a3 255 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 2 10 - T 13-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 AP3564_05100 dd100f7f5d072913b5399eb7d6a215a3 255 PIRSF PIRSF005902 1 255 7.5E-95 T 13-10-2018 IPR001130 TatD family GO:0016788 AP3564_05100 dd100f7f5d072913b5399eb7d6a215a3 255 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 189 205 - T 13-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 AP3564_05100 dd100f7f5d072913b5399eb7d6a215a3 255 Gene3D G3DSA:3.20.20.140 1 255 2.3E-114 T 13-10-2018 AP3564_05100 dd100f7f5d072913b5399eb7d6a215a3 255 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 2 253 6.3E-102 T 13-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 AP3564_03295 4f34888ae8a67417fc4956a35758a2f1 929 Gene3D G3DSA:2.60.40.10 826 919 2.5E-7 T 13-10-2018 IPR013783 Immunoglobulin-like fold AP3564_03295 4f34888ae8a67417fc4956a35758a2f1 929 Gene3D G3DSA:1.10.20.80 312 591 5.2E-139 T 13-10-2018 AP3564_03295 4f34888ae8a67417fc4956a35758a2f1 929 SUPERFAMILY SSF56601 261 735 2.38E-107 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AP3564_03295 4f34888ae8a67417fc4956a35758a2f1 929 Gene3D G3DSA:3.40.710.10 370 698 5.2E-139 T 13-10-2018 AP3564_03295 4f34888ae8a67417fc4956a35758a2f1 929 Gene3D G3DSA:1.10.3810.10 99 308 3.6E-69 T 13-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AP3564_03295 4f34888ae8a67417fc4956a35758a2f1 929 Pfam PF00912 Transglycosylase 91 275 4.7E-56 T 13-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AP3564_03295 4f34888ae8a67417fc4956a35758a2f1 929 SUPERFAMILY SSF53955 76 298 9.56E-65 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily AP3564_03295 4f34888ae8a67417fc4956a35758a2f1 929 Pfam PF00905 Penicillin binding protein transpeptidase domain 413 654 2.1E-30 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AP3564_01490 2176dff7c95b24d0bcdecf62cfb3e089 369 Hamap MF_01933 o-succinylbenzoate synthase [menC]. 1 360 46.397 T 13-10-2018 IPR010197 o-Succinylbenzoate synthase, MenC type 2 GO:0009234|GO:0016829 KEGG: 00130+4.2.1.113|MetaCyc: PWY-5837 AP3564_01490 2176dff7c95b24d0bcdecf62cfb3e089 369 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 13 125 3.9E-15 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AP3564_01490 2176dff7c95b24d0bcdecf62cfb3e089 369 Gene3D G3DSA:3.30.390.10 8 360 1.5E-139 T 13-10-2018 IPR029017 Enolase-like, N-terminal AP3564_01490 2176dff7c95b24d0bcdecf62cfb3e089 369 SUPERFAMILY SSF51604 114 365 3.14E-67 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AP3564_01490 2176dff7c95b24d0bcdecf62cfb3e089 369 Pfam PF13378 Enolase C-terminal domain-like 150 354 5.6E-46 T 13-10-2018 IPR029065 Enolase C-terminal domain-like AP3564_01490 2176dff7c95b24d0bcdecf62cfb3e089 369 TIGRFAM TIGR01928 menC_lowGC/arch: o-succinylbenzoate synthase 11 333 1.0E-127 T 13-10-2018 IPR010197 o-Succinylbenzoate synthase, MenC type 2 GO:0009234|GO:0016829 KEGG: 00130+4.2.1.113|MetaCyc: PWY-5837 AP3564_01490 2176dff7c95b24d0bcdecf62cfb3e089 369 SMART SM00922 143 235 9.9E-20 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AP3564_01490 2176dff7c95b24d0bcdecf62cfb3e089 369 SUPERFAMILY SSF54826 2 126 8.2E-35 T 13-10-2018 AP3564_01490 2176dff7c95b24d0bcdecf62cfb3e089 369 Gene3D G3DSA:3.20.20.120 118 347 1.5E-139 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AP3564_05895 358f2b4c5b586d4591fc1f9cea294695 145 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 4 142 2.8E-68 T 13-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05895 358f2b4c5b586d4591fc1f9cea294695 145 SUPERFAMILY SSF52161 5 143 4.32E-62 T 13-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 AP3564_05895 358f2b4c5b586d4591fc1f9cea294695 145 ProSitePatterns PS00783 Ribosomal protein L13 signature. 106 128 - T 13-10-2018 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 AP3564_05895 358f2b4c5b586d4591fc1f9cea294695 145 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 16 144 29.382 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AP3564_05895 358f2b4c5b586d4591fc1f9cea294695 145 Pfam PF00572 Ribosomal protein L13 15 139 2.1E-59 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AP3564_05895 358f2b4c5b586d4591fc1f9cea294695 145 PIRSF PIRSF002181 1 143 1.3E-52 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AP3564_05895 358f2b4c5b586d4591fc1f9cea294695 145 Gene3D G3DSA:3.90.1180.10 1 143 3.9E-64 T 13-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 AP3564_00555 ec80e756bbd461bf175cd5f9cf8b4eb2 323 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 146 174 - T 13-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 AP3564_00555 ec80e756bbd461bf175cd5f9cf8b4eb2 323 SUPERFAMILY SSF52283 1 129 8.13E-30 T 13-10-2018 AP3564_00555 ec80e756bbd461bf175cd5f9cf8b4eb2 323 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 107 285 8.4E-62 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AP3564_00555 ec80e756bbd461bf175cd5f9cf8b4eb2 323 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 5 317 2.8E-26 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 AP3564_00555 ec80e756bbd461bf175cd5f9cf8b4eb2 323 Gene3D G3DSA:3.40.50.720 4 309 3.8E-109 T 13-10-2018 AP3564_00555 ec80e756bbd461bf175cd5f9cf8b4eb2 323 Gene3D G3DSA:3.40.50.720 95 285 3.8E-109 T 13-10-2018 AP3564_00555 ec80e756bbd461bf175cd5f9cf8b4eb2 323 SUPERFAMILY SSF51735 101 286 5.07E-58 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_18845 c656a400ac09b616858b8ec96b57f6e0 179 Pfam PF02829 3H domain 78 174 3.5E-38 T 13-10-2018 IPR004173 3H domain GO:0036094 AP3564_18845 c656a400ac09b616858b8ec96b57f6e0 179 SUPERFAMILY SSF46785 6 64 7.89E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_18845 c656a400ac09b616858b8ec96b57f6e0 179 Gene3D G3DSA:3.30.1340.20 71 178 1.1E-39 T 13-10-2018 IPR035922 3H domain superfamily AP3564_18845 c656a400ac09b616858b8ec96b57f6e0 179 Pfam PF08279 HTH domain 9 61 1.1E-15 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 AP3564_18845 c656a400ac09b616858b8ec96b57f6e0 179 PIRSF PIRSF037847 4 177 2.9E-70 T 13-10-2018 IPR026043 Transcription repressor NadR AP3564_18845 c656a400ac09b616858b8ec96b57f6e0 179 ProDom PD469575 TRANSCRIPTION DNA-BINDING REGULATION TRANSCRIPTIONAL REGULATOR REPRESSOR FAMILY BIOTIN REGULATOR 3H 82 175 2.0E-33 T 13-10-2018 IPR004173 3H domain GO:0036094 AP3564_18845 c656a400ac09b616858b8ec96b57f6e0 179 SUPERFAMILY SSF75500 74 176 1.7E-38 T 13-10-2018 IPR035922 3H domain superfamily AP3564_18845 c656a400ac09b616858b8ec96b57f6e0 179 Gene3D G3DSA:1.10.10.10 1 64 1.2E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_10175 9afd59ba40aaf9c43f321fcbe7c955c8 196 Pfam PF01928 CYTH domain 5 187 3.6E-31 T 13-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 AP3564_10175 9afd59ba40aaf9c43f321fcbe7c955c8 196 SMART SM01118 4 190 6.2E-18 T 13-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 AP3564_10175 9afd59ba40aaf9c43f321fcbe7c955c8 196 PIRSF PIRSF012526 1 194 2.2E-67 T 13-10-2018 IPR009195 Uncharacterised protein family YjbK AP3564_10175 9afd59ba40aaf9c43f321fcbe7c955c8 196 Gene3D G3DSA:2.40.320.10 1 192 8.2E-54 T 13-10-2018 AP3564_10175 9afd59ba40aaf9c43f321fcbe7c955c8 196 SUPERFAMILY SSF55154 5 189 2.13E-29 T 13-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 AP3564_11915 fe2dde627e8f96a6ac132dafab62a92d 285 SUPERFAMILY SSF56300 58 282 8.44E-38 T 13-10-2018 AP3564_11915 fe2dde627e8f96a6ac132dafab62a92d 285 Gene3D G3DSA:3.60.21.10 57 259 8.7E-29 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like AP3564_11915 fe2dde627e8f96a6ac132dafab62a92d 285 Pfam PF00149 Calcineurin-like phosphoesterase 58 223 1.1E-13 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AP3564_16365 60819d62ff3f996925e64ece284d9ef3 247 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 244 5.3E-73 T 13-10-2018 AP3564_16365 60819d62ff3f996925e64ece284d9ef3 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 8.2E-52 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_16365 60819d62ff3f996925e64ece284d9ef3 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 8.2E-52 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_16365 60819d62ff3f996925e64ece284d9ef3 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 8.2E-52 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_16365 60819d62ff3f996925e64ece284d9ef3 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 8.2E-52 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_16365 60819d62ff3f996925e64ece284d9ef3 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 8.2E-52 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_16365 60819d62ff3f996925e64ece284d9ef3 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 8.2E-52 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_16365 60819d62ff3f996925e64ece284d9ef3 247 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 7 245 5.0E-110 T 13-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AP3564_16365 60819d62ff3f996925e64ece284d9ef3 247 Gene3D G3DSA:3.40.50.720 4 246 7.6E-95 T 13-10-2018 AP3564_16365 60819d62ff3f996925e64ece284d9ef3 247 SUPERFAMILY SSF51735 4 246 3.03E-96 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_16365 60819d62ff3f996925e64ece284d9ef3 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 6.0E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_16365 60819d62ff3f996925e64ece284d9ef3 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 6.0E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_16365 60819d62ff3f996925e64ece284d9ef3 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 6.0E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_16365 60819d62ff3f996925e64ece284d9ef3 247 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5 185 5.1E-5 T 13-10-2018 AP3564_16365 60819d62ff3f996925e64ece284d9ef3 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AP3564_14245 d8dba25c18bdf79e176169ec76b4e5f5 380 Gene3D G3DSA:2.40.110.10 122 234 4.0E-42 T 13-10-2018 AP3564_14245 d8dba25c18bdf79e176169ec76b4e5f5 380 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 218 6.3E-28 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AP3564_14245 d8dba25c18bdf79e176169ec76b4e5f5 380 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 118 4.0E-41 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AP3564_14245 d8dba25c18bdf79e176169ec76b4e5f5 380 Gene3D G3DSA:1.10.540.10 1 120 3.6E-47 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AP3564_14245 d8dba25c18bdf79e176169ec76b4e5f5 380 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 124 136 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AP3564_14245 d8dba25c18bdf79e176169ec76b4e5f5 380 SUPERFAMILY SSF56645 1 243 6.41E-91 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AP3564_14245 d8dba25c18bdf79e176169ec76b4e5f5 380 SUPERFAMILY SSF47203 229 378 4.64E-62 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AP3564_14245 d8dba25c18bdf79e176169ec76b4e5f5 380 Gene3D G3DSA:1.20.140.10 235 379 4.0E-60 T 13-10-2018 AP3564_14245 d8dba25c18bdf79e176169ec76b4e5f5 380 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 231 378 9.6E-55 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AP3564_14245 d8dba25c18bdf79e176169ec76b4e5f5 380 PIRSF PIRSF016578 3 378 3.7E-26 T 13-10-2018 AP3564_14245 d8dba25c18bdf79e176169ec76b4e5f5 380 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 337 356 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AP3564_17250 4c324dcaf6bcdd653454048d0272034c 347 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 189 210 - T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AP3564_17250 4c324dcaf6bcdd653454048d0272034c 347 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3 161 6.0E-55 T 13-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AP3564_17250 4c324dcaf6bcdd653454048d0272034c 347 PIRSF PIRSF000114 1 333 4.5E-113 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AP3564_17250 4c324dcaf6bcdd653454048d0272034c 347 SUPERFAMILY SSF48179 181 332 6.97E-59 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AP3564_17250 4c324dcaf6bcdd653454048d0272034c 347 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 181 321 1.3E-55 T 13-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AP3564_17250 4c324dcaf6bcdd653454048d0272034c 347 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 2 323 38.891 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AP3564_17250 4c324dcaf6bcdd653454048d0272034c 347 Gene3D G3DSA:1.10.1040.10 190 337 1.2E-54 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AP3564_17250 4c324dcaf6bcdd653454048d0272034c 347 SUPERFAMILY SSF51735 3 179 5.96E-60 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_17250 4c324dcaf6bcdd653454048d0272034c 347 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 174 198 1.7E-46 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AP3564_17250 4c324dcaf6bcdd653454048d0272034c 347 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 134 154 1.7E-46 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AP3564_17250 4c324dcaf6bcdd653454048d0272034c 347 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 56 83 1.7E-46 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AP3564_17250 4c324dcaf6bcdd653454048d0272034c 347 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 6 23 1.7E-46 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AP3564_17250 4c324dcaf6bcdd653454048d0272034c 347 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 199 223 1.7E-46 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AP3564_17250 4c324dcaf6bcdd653454048d0272034c 347 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 239 256 1.7E-46 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AP3564_17250 4c324dcaf6bcdd653454048d0272034c 347 Gene3D G3DSA:3.40.50.720 1 188 1.4E-66 T 13-10-2018 AP3564_16645 729fcf54d815bd91ce3ec49f707f5d1d 428 SMART SM00842 7 194 3.9E-97 T 13-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 AP3564_16645 729fcf54d815bd91ce3ec49f707f5d1d 428 SUPERFAMILY SSF53067 6 194 5.32E-59 T 13-10-2018 AP3564_16645 729fcf54d815bd91ce3ec49f707f5d1d 428 Pfam PF02491 SHS2 domain inserted in FTSA 81 160 1.8E-28 T 13-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 AP3564_16645 729fcf54d815bd91ce3ec49f707f5d1d 428 SUPERFAMILY SSF53067 197 368 3.58E-45 T 13-10-2018 AP3564_16645 729fcf54d815bd91ce3ec49f707f5d1d 428 PIRSF PIRSF003101 1 427 4.2E-152 T 13-10-2018 IPR020823 Cell division protein FtsA AP3564_16645 729fcf54d815bd91ce3ec49f707f5d1d 428 Gene3D G3DSA:3.90.640.10 233 298 9.1E-119 T 13-10-2018 AP3564_16645 729fcf54d815bd91ce3ec49f707f5d1d 428 Pfam PF14450 Cell division protein FtsA 9 187 1.6E-9 T 13-10-2018 AP3564_16645 729fcf54d815bd91ce3ec49f707f5d1d 428 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 7 369 2.1E-130 T 13-10-2018 IPR020823 Cell division protein FtsA AP3564_16645 729fcf54d815bd91ce3ec49f707f5d1d 428 Gene3D G3DSA:3.30.420.40 195 349 9.1E-119 T 13-10-2018 AP3564_16645 729fcf54d815bd91ce3ec49f707f5d1d 428 Gene3D G3DSA:3.30.1490.110 83 167 9.1E-119 T 13-10-2018 AP3564_16645 729fcf54d815bd91ce3ec49f707f5d1d 428 Pfam PF14450 Cell division protein FtsA 205 366 4.5E-25 T 13-10-2018 AP3564_16645 729fcf54d815bd91ce3ec49f707f5d1d 428 Gene3D G3DSA:3.30.420.40 10 363 9.1E-119 T 13-10-2018 AP3564_16645 729fcf54d815bd91ce3ec49f707f5d1d 428 Hamap MF_02033 Cell division protein FtsA [ftsA]. 3 427 31.421 T 13-10-2018 IPR020823 Cell division protein FtsA AP3564_14640 94cffb477b416babf386a44e5bcf59ae 77 Pfam PF10006 Uncharacterized conserved protein (DUF2249) 6 74 3.2E-17 T 13-10-2018 IPR018720 Domain of unknown function DUF2249 AP3564_19055 0eae7aa42e6ee7e5e3169929d907c6e7 471 Gene3D G3DSA:3.30.499.20 5 286 2.2E-104 T 13-10-2018 AP3564_19055 0eae7aa42e6ee7e5e3169929d907c6e7 471 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 2 466 59.644 T 13-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 AP3564_19055 0eae7aa42e6ee7e5e3169929d907c6e7 471 PRINTS PR00415 Aconitase family signature 195 208 3.7E-48 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AP3564_19055 0eae7aa42e6ee7e5e3169929d907c6e7 471 PRINTS PR00415 Aconitase family signature 399 412 3.7E-48 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AP3564_19055 0eae7aa42e6ee7e5e3169929d907c6e7 471 PRINTS PR00415 Aconitase family signature 82 95 3.7E-48 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AP3564_19055 0eae7aa42e6ee7e5e3169929d907c6e7 471 PRINTS PR00415 Aconitase family signature 119 132 3.7E-48 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AP3564_19055 0eae7aa42e6ee7e5e3169929d907c6e7 471 PRINTS PR00415 Aconitase family signature 133 148 3.7E-48 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AP3564_19055 0eae7aa42e6ee7e5e3169929d907c6e7 471 PRINTS PR00415 Aconitase family signature 343 354 3.7E-48 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AP3564_19055 0eae7aa42e6ee7e5e3169929d907c6e7 471 PRINTS PR00415 Aconitase family signature 108 116 3.7E-48 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AP3564_19055 0eae7aa42e6ee7e5e3169929d907c6e7 471 PRINTS PR00415 Aconitase family signature 209 222 3.7E-48 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AP3564_19055 0eae7aa42e6ee7e5e3169929d907c6e7 471 PRINTS PR00415 Aconitase family signature 286 300 3.7E-48 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AP3564_19055 0eae7aa42e6ee7e5e3169929d907c6e7 471 Gene3D G3DSA:3.30.499.10 326 471 3.9E-50 T 13-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 AP3564_19055 0eae7aa42e6ee7e5e3169929d907c6e7 471 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 3 463 5.0E-254 T 13-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 AP3564_19055 0eae7aa42e6ee7e5e3169929d907c6e7 471 Pfam PF00330 Aconitase family (aconitate hydratase) 8 457 3.3E-161 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AP3564_19055 0eae7aa42e6ee7e5e3169929d907c6e7 471 ProSitePatterns PS00450 Aconitase family signature 1. 339 355 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AP3564_19055 0eae7aa42e6ee7e5e3169929d907c6e7 471 SUPERFAMILY SSF53732 2 465 1.57E-171 T 13-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 AP3564_00625 50f5ddde6b6e1fb2af32332550a85044 483 Gene3D G3DSA:3.40.309.10 255 446 2.9E-196 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AP3564_00625 50f5ddde6b6e1fb2af32332550a85044 483 Gene3D G3DSA:3.40.605.10 9 474 2.9E-196 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AP3564_00625 50f5ddde6b6e1fb2af32332550a85044 483 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 278 289 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AP3564_00625 50f5ddde6b6e1fb2af32332550a85044 483 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 250 257 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AP3564_00625 50f5ddde6b6e1fb2af32332550a85044 483 Pfam PF00171 Aldehyde dehydrogenase family 13 476 1.8E-188 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AP3564_00625 50f5ddde6b6e1fb2af32332550a85044 483 SUPERFAMILY SSF53720 2 479 2.75E-183 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AP3564_03045 c4ecb7ad8e249bfdcecd2ce9fe17064e 138 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 63 135 1.6E-21 T 13-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AP3564_03045 c4ecb7ad8e249bfdcecd2ce9fe17064e 138 PIRSF PIRSF006092 9 137 1.1E-18 T 13-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 AP3564_03045 c4ecb7ad8e249bfdcecd2ce9fe17064e 138 Gene3D G3DSA:3.10.50.30 55 136 2.5E-20 T 13-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 AP3564_03045 c4ecb7ad8e249bfdcecd2ce9fe17064e 138 SUPERFAMILY SSF54534 63 135 2.88E-16 T 13-10-2018 AP3564_09060 8be8a80a2b06600174ea18eaedbcb5d9 435 SUPERFAMILY SSF55021 351 424 7.33E-13 T 13-10-2018 AP3564_09060 8be8a80a2b06600174ea18eaedbcb5d9 435 Pfam PF00742 Homoserine dehydrogenase 140 318 2.6E-67 T 13-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 AP3564_09060 8be8a80a2b06600174ea18eaedbcb5d9 435 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 13 132 3.5E-25 T 13-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 AP3564_09060 8be8a80a2b06600174ea18eaedbcb5d9 435 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 186 208 - T 13-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 AP3564_09060 8be8a80a2b06600174ea18eaedbcb5d9 435 Gene3D G3DSA:3.30.360.10 139 346 1.1E-151 T 13-10-2018 AP3564_09060 8be8a80a2b06600174ea18eaedbcb5d9 435 SUPERFAMILY SSF55347 140 305 9.81E-55 T 13-10-2018 AP3564_09060 8be8a80a2b06600174ea18eaedbcb5d9 435 PIRSF PIRSF000098 4 432 1.6E-172 T 13-10-2018 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 AP3564_09060 8be8a80a2b06600174ea18eaedbcb5d9 435 Pfam PF01842 ACT domain 352 417 1.3E-12 T 13-10-2018 IPR002912 ACT domain AP3564_09060 8be8a80a2b06600174ea18eaedbcb5d9 435 SUPERFAMILY SSF51735 6 161 8.44E-34 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_09060 8be8a80a2b06600174ea18eaedbcb5d9 435 Gene3D G3DSA:3.30.70.260 347 420 1.1E-151 T 13-10-2018 AP3564_09060 8be8a80a2b06600174ea18eaedbcb5d9 435 Gene3D G3DSA:3.40.50.720 7 340 1.1E-151 T 13-10-2018 AP3564_09060 8be8a80a2b06600174ea18eaedbcb5d9 435 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 354 417 0.003 T 13-10-2018 AP3564_05745 d6fbb73cc0ad73f0d27cad39bb46280e 92 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 92 6.7E-48 T 13-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 AP3564_05745 d6fbb73cc0ad73f0d27cad39bb46280e 92 Gene3D G3DSA:3.30.860.10 1 92 1.1E-41 T 13-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05745 d6fbb73cc0ad73f0d27cad39bb46280e 92 SUPERFAMILY SSF54570 3 84 4.45E-36 T 13-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05745 d6fbb73cc0ad73f0d27cad39bb46280e 92 PIRSF PIRSF002144 1 92 9.8E-33 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05745 d6fbb73cc0ad73f0d27cad39bb46280e 92 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 25.844 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05745 d6fbb73cc0ad73f0d27cad39bb46280e 92 Pfam PF00203 Ribosomal protein S19 3 83 6.0E-37 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05745 d6fbb73cc0ad73f0d27cad39bb46280e 92 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 13-10-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05745 d6fbb73cc0ad73f0d27cad39bb46280e 92 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 9.8E-25 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05745 d6fbb73cc0ad73f0d27cad39bb46280e 92 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 9.8E-25 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05745 d6fbb73cc0ad73f0d27cad39bb46280e 92 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 9.8E-25 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_03815 0590190bce14c660a9d0b24223647642 333 Gene3D G3DSA:3.90.640.10 178 251 3.9E-127 T 13-10-2018 AP3564_03815 0590190bce14c660a9d0b24223647642 333 SUPERFAMILY SSF53067 2 140 3.02E-39 T 13-10-2018 AP3564_03815 0590190bce14c660a9d0b24223647642 333 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 61 84 1.2E-58 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AP3564_03815 0590190bce14c660a9d0b24223647642 333 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 41 59 1.2E-58 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AP3564_03815 0590190bce14c660a9d0b24223647642 333 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 179 199 1.2E-58 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AP3564_03815 0590190bce14c660a9d0b24223647642 333 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 292 318 1.2E-58 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AP3564_03815 0590190bce14c660a9d0b24223647642 333 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 124 143 1.2E-58 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AP3564_03815 0590190bce14c660a9d0b24223647642 333 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 2 327 5.8E-136 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AP3564_03815 0590190bce14c660a9d0b24223647642 333 Gene3D G3DSA:3.30.420.40 146 309 3.9E-127 T 13-10-2018 AP3564_03815 0590190bce14c660a9d0b24223647642 333 SUPERFAMILY SSF53067 143 325 3.44E-49 T 13-10-2018 AP3564_03815 0590190bce14c660a9d0b24223647642 333 Gene3D G3DSA:3.30.420.40 6 319 3.9E-127 T 13-10-2018 AP3564_03815 0590190bce14c660a9d0b24223647642 333 Pfam PF06723 MreB/Mbl protein 3 327 1.1E-149 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AP3564_06160 75e83d128ea7aef2633b2f74376b39b4 321 PIRSF PIRSF006470 1 321 1.9E-83 T 13-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 AP3564_06160 75e83d128ea7aef2633b2f74376b39b4 321 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 28 305 1.9E-86 T 13-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 AP3564_06160 75e83d128ea7aef2633b2f74376b39b4 321 Gene3D G3DSA:3.40.190.170 5 320 4.6E-101 T 13-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily AP3564_06160 75e83d128ea7aef2633b2f74376b39b4 321 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 29 282 1.6E-73 T 13-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 AP3564_01505 350ead6b51aa42793dc6fc5ef5e237c0 181 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 110 162 1.8E-9 T 13-10-2018 IPR019264 Domain of unknown function DUF2179 AP3564_01505 350ead6b51aa42793dc6fc5ef5e237c0 181 Hamap MF_01515 UPF0316 protein . 2 170 28.157 T 13-10-2018 IPR022930 Protein of unknown function UPF0316 AP3564_14400 cf78a8179bec81e6d459ef119ee0763d 323 Pfam PF13280 WYL domain 146 319 8.5E-30 T 13-10-2018 IPR026881 WYL domain AP3564_08380 04d4f4cfa51ff9a93dfd733e83c00b20 327 SMART SM00937 45 155 5.6E-62 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 AP3564_08380 04d4f4cfa51ff9a93dfd733e83c00b20 327 Gene3D G3DSA:3.30.70.1660 90 319 2.4E-102 T 13-10-2018 AP3564_08380 04d4f4cfa51ff9a93dfd733e83c00b20 327 SUPERFAMILY SSF75620 1 324 3.53E-139 T 13-10-2018 AP3564_08380 04d4f4cfa51ff9a93dfd733e83c00b20 327 Hamap MF_00094 Peptide chain release factor 2 [prfB]. 1 326 38.311 T 13-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 AP3564_08380 04d4f4cfa51ff9a93dfd733e83c00b20 327 Pfam PF03462 PCRF domain 1 179 5.6E-62 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 AP3564_08380 04d4f4cfa51ff9a93dfd733e83c00b20 327 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 205 221 - T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AP3564_08380 04d4f4cfa51ff9a93dfd733e83c00b20 327 Gene3D G3DSA:3.30.160.20 186 281 2.4E-102 T 13-10-2018 AP3564_08380 04d4f4cfa51ff9a93dfd733e83c00b20 327 Pfam PF00472 RF-1 domain 188 298 4.8E-45 T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AP3564_08380 04d4f4cfa51ff9a93dfd733e83c00b20 327 Gene3D G3DSA:1.20.58.410 1 76 1.3E-17 T 13-10-2018 AP3564_08380 04d4f4cfa51ff9a93dfd733e83c00b20 327 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 2 325 4.5E-170 T 13-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 AP3564_17145 7d83da3da8dcd82e3978e4d627ed33a5 398 Gene3D G3DSA:3.40.50.1100 11 207 3.9E-182 T 13-10-2018 AP3564_17145 7d83da3da8dcd82e3978e4d627ed33a5 398 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 8 390 1.3E-183 T 13-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AP3564_17145 7d83da3da8dcd82e3978e4d627ed33a5 398 Gene3D G3DSA:3.40.50.1100 55 384 3.9E-182 T 13-10-2018 AP3564_17145 7d83da3da8dcd82e3978e4d627ed33a5 398 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 3 391 51.007 T 13-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AP3564_17145 7d83da3da8dcd82e3978e4d627ed33a5 398 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 55 378 9.6E-46 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AP3564_17145 7d83da3da8dcd82e3978e4d627ed33a5 398 SUPERFAMILY SSF53686 4 389 8.51E-140 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AP3564_17145 7d83da3da8dcd82e3978e4d627ed33a5 398 PIRSF PIRSF001413 1 396 4.9E-162 T 13-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AP3564_17145 7d83da3da8dcd82e3978e4d627ed33a5 398 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 82 96 - T 13-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AP3564_03285 81494425b1fb47dcd1895c23574f1a52 571 Gene3D G3DSA:3.40.50.12780 15 454 1.9E-124 T 13-10-2018 AP3564_03285 81494425b1fb47dcd1895c23574f1a52 571 ProSitePatterns PS00455 Putative AMP-binding domain signature. 211 222 - T 13-10-2018 IPR020845 AMP-binding, conserved site AP3564_03285 81494425b1fb47dcd1895c23574f1a52 571 Gene3D G3DSA:3.30.300.30 457 570 1.1E-28 T 13-10-2018 AP3564_03285 81494425b1fb47dcd1895c23574f1a52 571 SUPERFAMILY SSF56801 22 561 9.29E-164 T 13-10-2018 AP3564_03285 81494425b1fb47dcd1895c23574f1a52 571 Pfam PF13193 AMP-binding enzyme C-terminal domain 470 548 3.8E-26 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AP3564_03285 81494425b1fb47dcd1895c23574f1a52 571 Pfam PF00501 AMP-binding enzyme 53 461 1.0E-96 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AP3564_16630 606c86794de1724d1d8977073a6a111c 239 TIGRFAM TIGR02835 spore_sigmaE: RNA polymerase sigma-E factor 7 239 5.5E-136 T 13-10-2018 IPR014200 RNA polymerase sigma-E type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AP3564_16630 606c86794de1724d1d8977073a6a111c 239 Gene3D G3DSA:1.10.10.10 168 239 4.0E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_16630 606c86794de1724d1d8977073a6a111c 239 Pfam PF04545 Sigma-70, region 4 180 233 1.1E-17 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 AP3564_16630 606c86794de1724d1d8977073a6a111c 239 Pfam PF04542 Sigma-70 region 2 62 131 1.4E-18 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AP3564_16630 606c86794de1724d1d8977073a6a111c 239 PRINTS PR00046 Major sigma-70 factor signature 86 99 5.3E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_16630 606c86794de1724d1d8977073a6a111c 239 PRINTS PR00046 Major sigma-70 factor signature 184 196 5.3E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_16630 606c86794de1724d1d8977073a6a111c 239 PRINTS PR00046 Major sigma-70 factor signature 220 231 5.3E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_16630 606c86794de1724d1d8977073a6a111c 239 PRINTS PR00046 Major sigma-70 factor signature 205 220 5.3E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_16630 606c86794de1724d1d8977073a6a111c 239 PIRSF PIRSF000770 3 239 2.1E-78 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_16630 606c86794de1724d1d8977073a6a111c 239 SUPERFAMILY SSF88659 143 237 3.18E-22 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AP3564_16630 606c86794de1724d1d8977073a6a111c 239 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 205 231 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_16630 606c86794de1724d1d8977073a6a111c 239 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 58 234 1.3E-35 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AP3564_16630 606c86794de1724d1d8977073a6a111c 239 Gene3D G3DSA:1.20.120.1810 24 131 1.8E-25 T 13-10-2018 AP3564_16630 606c86794de1724d1d8977073a6a111c 239 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 86 99 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_16630 606c86794de1724d1d8977073a6a111c 239 SUPERFAMILY SSF88946 26 132 1.05E-35 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AP3564_01170 b5ddeb56ea2aa3fcf973f7b94d863ca3 315 Gene3D G3DSA:1.10.10.10 3 65 2.7E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_01170 b5ddeb56ea2aa3fcf973f7b94d863ca3 315 SUPERFAMILY SSF46785 7 64 5.62E-6 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_01170 b5ddeb56ea2aa3fcf973f7b94d863ca3 315 Pfam PF13280 WYL domain 142 309 5.2E-38 T 13-10-2018 IPR026881 WYL domain AP3564_01170 b5ddeb56ea2aa3fcf973f7b94d863ca3 315 Pfam PF08279 HTH domain 10 60 9.4E-9 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 AP3564_15825 642f725411f74073c67195cfc91cc2d8 288 Gene3D G3DSA:3.40.50.970 67 216 3.7E-28 T 13-10-2018 AP3564_15825 642f725411f74073c67195cfc91cc2d8 288 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 48 195 4.6E-33 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AP3564_15825 642f725411f74073c67195cfc91cc2d8 288 TIGRFAM TIGR02177 PorB_KorB: 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family 14 282 2.0E-98 T 13-10-2018 IPR011896 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate AP3564_15825 642f725411f74073c67195cfc91cc2d8 288 Pfam PF12367 Pyruvate ferredoxin oxidoreductase beta subunit C terminal 199 263 1.8E-22 T 13-10-2018 IPR032686 Pyruvate ferredoxin oxidoreductase beta subunit, C-terminal AP3564_15825 642f725411f74073c67195cfc91cc2d8 288 SUPERFAMILY SSF52518 12 286 5.5E-80 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold AP3564_08400 e468b6fa4d28dc555e9814208f494d2e 428 SUPERFAMILY SSF51261 221 427 3.03E-51 T 13-10-2018 IPR011055 Duplicated hybrid motif AP3564_08400 e468b6fa4d28dc555e9814208f494d2e 428 SUPERFAMILY SSF90257 30 131 2.88E-5 T 13-10-2018 AP3564_08400 e468b6fa4d28dc555e9814208f494d2e 428 Gene3D G3DSA:2.70.70.10 236 428 6.1E-45 T 13-10-2018 IPR011055 Duplicated hybrid motif AP3564_08400 e468b6fa4d28dc555e9814208f494d2e 428 Pfam PF01551 Peptidase family M23 321 421 4.7E-30 T 13-10-2018 IPR016047 Peptidase M23 AP3564_10405 5f4b017d83e20499f064cac6c59a5733 295 Gene3D G3DSA:3.30.43.10 1 57 1.3E-24 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 AP3564_10405 5f4b017d83e20499f064cac6c59a5733 295 SUPERFAMILY SSF55447 181 286 2.75E-23 T 13-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily AP3564_10405 5f4b017d83e20499f064cac6c59a5733 295 Gene3D G3DSA:3.30.465.10 58 175 3.3E-37 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AP3564_10405 5f4b017d83e20499f064cac6c59a5733 295 SUPERFAMILY SSF56176 1 174 4.91E-52 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AP3564_10405 5f4b017d83e20499f064cac6c59a5733 295 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 183 282 3.7E-21 T 13-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal AP3564_10405 5f4b017d83e20499f064cac6c59a5733 295 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 5 173 1.1E-45 T 13-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 AP3564_10405 5f4b017d83e20499f064cac6c59a5733 295 SMART SM01092 181 283 2.0E-18 T 13-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal AP3564_10405 5f4b017d83e20499f064cac6c59a5733 295 Gene3D G3DSA:3.30.390.50 179 291 3.5E-31 T 13-10-2018 AP3564_07145 e76138974803fd0debf5a182b2ea4bf9 494 SMART SM00382 23 215 9.6E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_07145 e76138974803fd0debf5a182b2ea4bf9 494 SMART SM00382 275 470 8.7E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_07145 e76138974803fd0debf5a182b2ea4bf9 494 Pfam PF00005 ABC transporter 14 167 1.0E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_07145 e76138974803fd0debf5a182b2ea4bf9 494 SUPERFAMILY SSF52540 1 214 8.2E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_07145 e76138974803fd0debf5a182b2ea4bf9 494 Pfam PF00005 ABC transporter 268 421 6.6E-20 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_07145 e76138974803fd0debf5a182b2ea4bf9 494 SUPERFAMILY SSF52540 267 480 3.83E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_07145 e76138974803fd0debf5a182b2ea4bf9 494 ProSitePatterns PS00211 ABC transporters family signature. 394 408 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_07145 e76138974803fd0debf5a182b2ea4bf9 494 Gene3D G3DSA:3.40.50.300 1 230 1.2E-55 T 13-10-2018 AP3564_07145 e76138974803fd0debf5a182b2ea4bf9 494 Gene3D G3DSA:3.40.50.300 258 491 1.4E-42 T 13-10-2018 AP3564_13995 23181f6db304212adf756ab5f7fab0a1 189 Pfam PF00581 Rhodanese-like domain 92 181 6.9E-18 T 13-10-2018 IPR001763 Rhodanese-like domain AP3564_13995 23181f6db304212adf756ab5f7fab0a1 189 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 8 32 - T 13-10-2018 IPR001455 TusA-like domain AP3564_13995 23181f6db304212adf756ab5f7fab0a1 189 Pfam PF01206 Sulfurtransferase TusA 7 75 6.5E-24 T 13-10-2018 IPR001455 TusA-like domain AP3564_13995 23181f6db304212adf756ab5f7fab0a1 189 SUPERFAMILY SSF64307 2 75 3.01E-25 T 13-10-2018 IPR036868 TusA-like domain superfamily AP3564_13995 23181f6db304212adf756ab5f7fab0a1 189 ProSitePatterns PS00380 Rhodanese signature 1. 116 127 - T 13-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 AP3564_13995 23181f6db304212adf756ab5f7fab0a1 189 Gene3D G3DSA:3.40.250.10 87 186 9.6E-31 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily AP3564_13995 23181f6db304212adf756ab5f7fab0a1 189 SUPERFAMILY SSF52821 89 181 3.27E-33 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily AP3564_13995 23181f6db304212adf756ab5f7fab0a1 189 SMART SM00450 91 186 6.0E-25 T 13-10-2018 IPR001763 Rhodanese-like domain AP3564_13995 23181f6db304212adf756ab5f7fab0a1 189 Gene3D G3DSA:3.30.110.40 1 77 1.7E-31 T 13-10-2018 IPR036868 TusA-like domain superfamily AP3564_03560 3baef54acef191047d9c9a2b4033b9ed 337 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 111 289 4.9E-66 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AP3564_03560 3baef54acef191047d9c9a2b4033b9ed 337 Gene3D G3DSA:3.40.50.720 6 316 7.0E-121 T 13-10-2018 AP3564_03560 3baef54acef191047d9c9a2b4033b9ed 337 Gene3D G3DSA:3.40.50.720 100 289 7.0E-121 T 13-10-2018 AP3564_03560 3baef54acef191047d9c9a2b4033b9ed 337 SUPERFAMILY SSF52283 3 140 4.73E-33 T 13-10-2018 AP3564_03560 3baef54acef191047d9c9a2b4033b9ed 337 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 151 178 - T 13-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 AP3564_03560 3baef54acef191047d9c9a2b4033b9ed 337 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 228 244 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AP3564_03560 3baef54acef191047d9c9a2b4033b9ed 337 SUPERFAMILY SSF51735 106 290 1.47E-60 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_03560 3baef54acef191047d9c9a2b4033b9ed 337 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 6 321 2.8E-30 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 AP3564_06325 5336341d8f129c9376448f1f76a736b6 431 Gene3D G3DSA:3.40.50.300 10 171 3.5E-5 T 13-10-2018 AP3564_06325 5336341d8f129c9376448f1f76a736b6 431 Pfam PF13315 Protein of unknown function (DUF4085) 4 207 3.5E-47 T 13-10-2018 IPR025144 Protein of unknown function DUF4085 AP3564_06325 5336341d8f129c9376448f1f76a736b6 431 SUPERFAMILY SSF160631 246 337 4.58E-6 T 13-10-2018 AP3564_06325 5336341d8f129c9376448f1f76a736b6 431 Gene3D G3DSA:3.40.1580.10 229 349 3.0E-7 T 13-10-2018 IPR037883 Knr4/Smi1-like domain superfamily AP3564_03030 a3dbcb2dbb463ca2e77b738a2bbb4526 369 Pfam PF03845 Spore germination protein 6 323 6.2E-64 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 AP3564_03030 a3dbcb2dbb463ca2e77b738a2bbb4526 369 Gene3D G3DSA:1.20.1740.10 4 193 1.7E-7 T 13-10-2018 AP3564_03030 a3dbcb2dbb463ca2e77b738a2bbb4526 369 TIGRFAM TIGR00912 2A0309: spore germination protein (amino acid permease) 6 362 9.8E-79 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 AP3564_19020 2e7ae2c583672e407b7f678fe3e85e5a 774 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 568 770 7.9E-101 T 13-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 AP3564_19020 2e7ae2c583672e407b7f678fe3e85e5a 774 Gene3D G3DSA:3.30.230.10 591 774 2.6E-87 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AP3564_19020 2e7ae2c583672e407b7f678fe3e85e5a 774 Gene3D G3DSA:2.30.130.40 2 114 1.2E-31 T 13-10-2018 AP3564_19020 2e7ae2c583672e407b7f678fe3e85e5a 774 SUPERFAMILY SSF54211 593 768 3.79E-57 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AP3564_19020 2e7ae2c583672e407b7f678fe3e85e5a 774 Hamap MF_01973 Lon protease [lon]. 9 770 74.436 T 13-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 AP3564_19020 2e7ae2c583672e407b7f678fe3e85e5a 774 SMART SM00464 8 200 1.1E-72 T 13-10-2018 IPR003111 Lon, substrate-binding domain AP3564_19020 2e7ae2c583672e407b7f678fe3e85e5a 774 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 350 487 3.0E-24 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AP3564_19020 2e7ae2c583672e407b7f678fe3e85e5a 774 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 9 199 1.6E-45 T 13-10-2018 IPR003111 Lon, substrate-binding domain AP3564_19020 2e7ae2c583672e407b7f678fe3e85e5a 774 Gene3D G3DSA:1.10.8.60 490 582 2.1E-34 T 13-10-2018 AP3564_19020 2e7ae2c583672e407b7f678fe3e85e5a 774 Gene3D G3DSA:1.20.58.1480 118 243 2.3E-44 T 13-10-2018 AP3564_19020 2e7ae2c583672e407b7f678fe3e85e5a 774 SUPERFAMILY SSF88697 9 199 8.95E-47 T 13-10-2018 IPR015947 PUA-like superfamily AP3564_19020 2e7ae2c583672e407b7f678fe3e85e5a 774 TIGRFAM TIGR00763 lon: endopeptidase La 10 769 0.0 T 13-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 AP3564_19020 2e7ae2c583672e407b7f678fe3e85e5a 774 PIRSF PIRSF001174 1 773 0.0 T 13-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 AP3564_19020 2e7ae2c583672e407b7f678fe3e85e5a 774 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 701 720 5.1E-55 T 13-10-2018 AP3564_19020 2e7ae2c583672e407b7f678fe3e85e5a 774 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 354 373 5.1E-55 T 13-10-2018 AP3564_19020 2e7ae2c583672e407b7f678fe3e85e5a 774 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 724 742 5.1E-55 T 13-10-2018 AP3564_19020 2e7ae2c583672e407b7f678fe3e85e5a 774 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 593 609 5.1E-55 T 13-10-2018 AP3564_19020 2e7ae2c583672e407b7f678fe3e85e5a 774 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 671 690 5.1E-55 T 13-10-2018 AP3564_19020 2e7ae2c583672e407b7f678fe3e85e5a 774 Gene3D G3DSA:3.40.50.300 312 489 1.4E-69 T 13-10-2018 AP3564_19020 2e7ae2c583672e407b7f678fe3e85e5a 774 SMART SM00382 346 494 5.2E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_19020 2e7ae2c583672e407b7f678fe3e85e5a 774 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 674 682 - T 13-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 AP3564_19020 2e7ae2c583672e407b7f678fe3e85e5a 774 SUPERFAMILY SSF52540 308 586 1.14E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_03750 d8ccf195d7c5cace929ac2f555fca30f 232 SUPERFAMILY SSF52540 46 225 1.63E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_03750 d8ccf195d7c5cace929ac2f555fca30f 232 Pfam PF13614 AAA domain 48 202 9.2E-16 T 13-10-2018 IPR025669 AAA domain AP3564_03750 d8ccf195d7c5cace929ac2f555fca30f 232 Gene3D G3DSA:3.40.50.300 2 232 2.8E-76 T 13-10-2018 AP3564_03750 d8ccf195d7c5cace929ac2f555fca30f 232 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 27 229 4.9E-71 T 13-10-2018 IPR005702 Exopolysaccharide synthesis protein GO:0045226 AP3564_05140 a90f1d51155e132def3cfb72c6bc6bc6 273 SUPERFAMILY SSF46785 2 73 2.99E-26 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_05140 a90f1d51155e132def3cfb72c6bc6bc6 273 Gene3D G3DSA:3.40.50.2020 74 273 6.8E-62 T 13-10-2018 AP3564_05140 a90f1d51155e132def3cfb72c6bc6bc6 273 TIGRFAM TIGR01743 purR_Bsub: pur operon repressor PurR 3 270 1.3E-124 T 13-10-2018 IPR010078 Pur operon repressor GO:0003677|GO:0045892|GO:0045982 AP3564_05140 a90f1d51155e132def3cfb72c6bc6bc6 273 Pfam PF00156 Phosphoribosyl transferase domain 108 258 2.4E-22 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AP3564_05140 a90f1d51155e132def3cfb72c6bc6bc6 273 SUPERFAMILY SSF53271 94 257 4.26E-42 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like AP3564_05140 a90f1d51155e132def3cfb72c6bc6bc6 273 Gene3D G3DSA:1.10.10.10 1 73 3.4E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_05140 a90f1d51155e132def3cfb72c6bc6bc6 273 Pfam PF09182 Bacterial purine repressor, N-terminal 4 73 4.3E-31 T 13-10-2018 IPR015265 Bacterial purine repressor, N-terminal GO:0003677|GO:0006355 AP3564_05140 a90f1d51155e132def3cfb72c6bc6bc6 273 ProDom PD029816 REPRESSOR OPERON PUR TRANSCRIPTION PURINE TRANSCRIPTIONAL PURR REGULATION DNA-BINDING GLYCOSYLTRANSFERASE 9 74 6.0E-28 T 13-10-2018 IPR015265 Bacterial purine repressor, N-terminal GO:0003677|GO:0006355 AP3564_01330 293105af89678097ba31110f0872742f 577 ProSitePatterns PS00211 ABC transporters family signature. 468 482 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_01330 293105af89678097ba31110f0872742f 577 SUPERFAMILY SSF52540 325 564 3.79E-82 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_01330 293105af89678097ba31110f0872742f 577 Gene3D G3DSA:3.40.50.300 320 575 1.3E-85 T 13-10-2018 AP3564_01330 293105af89678097ba31110f0872742f 577 SUPERFAMILY SSF90123 4 311 3.27E-64 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AP3564_01330 293105af89678097ba31110f0872742f 577 Gene3D G3DSA:1.20.1560.10 1 311 2.2E-79 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AP3564_01330 293105af89678097ba31110f0872742f 577 Pfam PF00664 ABC transporter transmembrane region 18 278 2.0E-42 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AP3564_01330 293105af89678097ba31110f0872742f 577 Pfam PF00005 ABC transporter 347 496 6.6E-36 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_01330 293105af89678097ba31110f0872742f 577 SMART SM00382 356 540 3.7E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_13090 4081616c0bdfeb2d0c421814fd855663 494 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 265 272 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AP3564_13090 4081616c0bdfeb2d0c421814fd855663 494 Gene3D G3DSA:3.40.309.10 270 459 4.2E-208 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AP3564_13090 4081616c0bdfeb2d0c421814fd855663 494 Pfam PF00171 Aldehyde dehydrogenase family 28 489 2.1E-194 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AP3564_13090 4081616c0bdfeb2d0c421814fd855663 494 Gene3D G3DSA:3.40.605.10 24 487 4.2E-208 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AP3564_13090 4081616c0bdfeb2d0c421814fd855663 494 SUPERFAMILY SSF53720 20 492 2.36E-190 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AP3564_04155 6e2c49e105c8debda0cdea2527d36d74 147 Pfam PF09671 Spore coat protein (Spore_GerQ) 61 135 8.0E-40 T 13-10-2018 IPR014099 Spore coat protein GerQ AP3564_04155 6e2c49e105c8debda0cdea2527d36d74 147 PIRSF PIRSF038931 1 147 3.4E-51 T 13-10-2018 IPR014099 Spore coat protein GerQ AP3564_04155 6e2c49e105c8debda0cdea2527d36d74 147 TIGRFAM TIGR02728 spore_gerQ: spore coat protein GerQ 58 138 6.7E-44 T 13-10-2018 IPR014099 Spore coat protein GerQ AP3564_05700 b146dbd8b67ffe8559626c6068c1ae30 137 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 136 2.0E-69 T 13-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05700 b146dbd8b67ffe8559626c6068c1ae30 137 Pfam PF00164 Ribosomal protein S12/S23 35 136 3.3E-38 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05700 b146dbd8b67ffe8559626c6068c1ae30 137 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 136 41.432 T 13-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05700 b146dbd8b67ffe8559626c6068c1ae30 137 PRINTS PR01034 Ribosomal protein S12 signature 40 55 7.0E-60 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05700 b146dbd8b67ffe8559626c6068c1ae30 137 PRINTS PR01034 Ribosomal protein S12 signature 107 123 7.0E-60 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05700 b146dbd8b67ffe8559626c6068c1ae30 137 PRINTS PR01034 Ribosomal protein S12 signature 123 135 7.0E-60 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05700 b146dbd8b67ffe8559626c6068c1ae30 137 PRINTS PR01034 Ribosomal protein S12 signature 71 90 7.0E-60 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05700 b146dbd8b67ffe8559626c6068c1ae30 137 PRINTS PR01034 Ribosomal protein S12 signature 55 70 7.0E-60 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05700 b146dbd8b67ffe8559626c6068c1ae30 137 PRINTS PR01034 Ribosomal protein S12 signature 90 107 7.0E-60 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05700 b146dbd8b67ffe8559626c6068c1ae30 137 Gene3D G3DSA:2.40.50.140 1 137 8.8E-63 T 13-10-2018 AP3564_05700 b146dbd8b67ffe8559626c6068c1ae30 137 PIRSF PIRSF002133 1 137 5.6E-50 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05700 b146dbd8b67ffe8559626c6068c1ae30 137 ProSitePatterns PS00055 Ribosomal protein S12 signature. 56 63 - T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05700 b146dbd8b67ffe8559626c6068c1ae30 137 SUPERFAMILY SSF50249 2 136 4.97E-50 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_02860 e386662dcfe5948a64123846f4f0a6db 81 Pfam PF14148 YhdB-like protein 1 69 6.5E-39 T 13-10-2018 IPR025431 YhdB-like protein AP3564_05325 e00e955e55b2ba97197c2c77eeeeb551 120 SUPERFAMILY SSF55620 2 119 1.11E-40 T 13-10-2018 AP3564_05325 e00e955e55b2ba97197c2c77eeeeb551 120 SMART SM00905 4 117 3.5E-52 T 13-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AP3564_05325 e00e955e55b2ba97197c2c77eeeeb551 120 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 2 117 1.0E-42 T 13-10-2018 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AP3564_05325 e00e955e55b2ba97197c2c77eeeeb551 120 TIGRFAM TIGR00526 folB_dom: FolB domain 2 119 3.9E-36 T 13-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AP3564_05325 e00e955e55b2ba97197c2c77eeeeb551 120 Gene3D G3DSA:3.30.1130.10 1 120 1.1E-46 T 13-10-2018 AP3564_05325 e00e955e55b2ba97197c2c77eeeeb551 120 Pfam PF02152 Dihydroneopterin aldolase 4 116 2.8E-36 T 13-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AP3564_19095 3c473aebb1ce6f77eb7bf264137f3fa3 170 Gene3D G3DSA:3.60.21.10 1 169 2.1E-48 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like AP3564_19095 3c473aebb1ce6f77eb7bf264137f3fa3 170 TIGRFAM TIGR00040 yfcE: phosphodiesterase, MJ0936 family 2 147 8.1E-34 T 13-10-2018 IPR000979 Phosphodiesterase MJ0936/Vps29 Reactome: R-HSA-3238698 AP3564_19095 3c473aebb1ce6f77eb7bf264137f3fa3 170 SUPERFAMILY SSF56300 2 159 4.29E-43 T 13-10-2018 AP3564_19095 3c473aebb1ce6f77eb7bf264137f3fa3 170 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 2 144 2.8E-30 T 13-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 AP3564_05235 23d5e3cc443625605cea1ea25252dc87 125 Pfam PF04977 Septum formation initiator 47 122 5.6E-19 T 13-10-2018 IPR007060 Septum formation initiator FtsL/DivIC AP3564_16270 3271b25501bf3a026fc2b92f57de47f1 386 SUPERFAMILY SSF52210 240 386 1.83E-55 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AP3564_16270 3271b25501bf3a026fc2b92f57de47f1 386 SUPERFAMILY SSF56059 1 238 3.91E-88 T 13-10-2018 AP3564_16270 3271b25501bf3a026fc2b92f57de47f1 386 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 385 2.4E-170 T 13-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AP3564_16270 3271b25501bf3a026fc2b92f57de47f1 386 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 282 - T 13-10-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AP3564_16270 3271b25501bf3a026fc2b92f57de47f1 386 Pfam PF00549 CoA-ligase 262 381 6.2E-26 T 13-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AP3564_16270 3271b25501bf3a026fc2b92f57de47f1 386 Gene3D G3DSA:3.40.50.261 240 386 9.4E-58 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AP3564_16270 3271b25501bf3a026fc2b92f57de47f1 386 Gene3D G3DSA:3.30.1490.20 21 104 2.3E-99 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AP3564_16270 3271b25501bf3a026fc2b92f57de47f1 386 PIRSF PIRSF001554 1 386 1.1E-158 T 13-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AP3564_16270 3271b25501bf3a026fc2b92f57de47f1 386 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 45.924 T 13-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AP3564_16270 3271b25501bf3a026fc2b92f57de47f1 386 Pfam PF08442 ATP-grasp domain 2 203 9.2E-86 T 13-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AP3564_16270 3271b25501bf3a026fc2b92f57de47f1 386 Gene3D G3DSA:3.30.470.20 1 234 2.3E-99 T 13-10-2018 AP3564_13710 6386c1ff684a2d0af2c6617c6ec8f378 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 166 2.8E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_13710 6386c1ff684a2d0af2c6617c6ec8f378 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 182 2.8E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_13710 6386c1ff684a2d0af2c6617c6ec8f378 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 194 2.8E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_13710 6386c1ff684a2d0af2c6617c6ec8f378 212 ProSitePatterns PS00622 LuxR-type HTH domain signature. 166 193 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_13710 6386c1ff684a2d0af2c6617c6ec8f378 212 Gene3D G3DSA:3.40.50.12740 3 210 7.6E-73 T 13-10-2018 AP3564_13710 6386c1ff684a2d0af2c6617c6ec8f378 212 Pfam PF00196 Bacterial regulatory proteins, luxR family 151 206 8.8E-22 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_13710 6386c1ff684a2d0af2c6617c6ec8f378 212 SUPERFAMILY SSF52172 1 134 5.27E-37 T 13-10-2018 IPR011006 CheY-like superfamily AP3564_13710 6386c1ff684a2d0af2c6617c6ec8f378 212 SMART SM00448 3 116 6.5E-36 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_13710 6386c1ff684a2d0af2c6617c6ec8f378 212 SMART SM00421 149 206 4.4E-24 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_13710 6386c1ff684a2d0af2c6617c6ec8f378 212 SUPERFAMILY SSF46894 141 209 4.08E-21 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AP3564_13710 6386c1ff684a2d0af2c6617c6ec8f378 212 Pfam PF00072 Response regulator receiver domain 5 116 1.8E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_15955 ef030bce2509664557b8535aeb1efd10 418 SUPERFAMILY SSF63411 3 204 4.83E-65 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AP3564_15955 ef030bce2509664557b8535aeb1efd10 418 SUPERFAMILY SSF63411 226 401 9.57E-43 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AP3564_15955 ef030bce2509664557b8535aeb1efd10 418 Gene3D G3DSA:3.30.830.10 1 216 1.4E-83 T 13-10-2018 AP3564_15955 ef030bce2509664557b8535aeb1efd10 418 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 33 56 - T 13-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 AP3564_15955 ef030bce2509664557b8535aeb1efd10 418 Pfam PF00675 Insulinase (Peptidase family M16) 12 159 3.9E-49 T 13-10-2018 IPR011765 Peptidase M16, N-terminal AP3564_15955 ef030bce2509664557b8535aeb1efd10 418 Pfam PF05193 Peptidase M16 inactive domain 166 337 1.3E-41 T 13-10-2018 IPR007863 Peptidase M16, C-terminal AP3564_15955 ef030bce2509664557b8535aeb1efd10 418 Gene3D G3DSA:3.30.830.10 218 415 1.1E-54 T 13-10-2018 AP3564_02550 c13a76cd70d830cad04d08987b6a924d 556 Pfam PF01266 FAD dependent oxidoreductase 23 346 8.8E-54 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AP3564_02550 c13a76cd70d830cad04d08987b6a924d 556 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 27 44 - T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AP3564_02550 c13a76cd70d830cad04d08987b6a924d 556 SUPERFAMILY SSF54373 252 344 1.73E-11 T 13-10-2018 AP3564_02550 c13a76cd70d830cad04d08987b6a924d 556 Gene3D G3DSA:3.50.50.60 20 381 2.9E-137 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_02550 c13a76cd70d830cad04d08987b6a924d 556 Gene3D G3DSA:3.30.9.10 104 345 2.9E-137 T 13-10-2018 AP3564_02550 c13a76cd70d830cad04d08987b6a924d 556 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 22 34 3.9E-31 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AP3564_02550 c13a76cd70d830cad04d08987b6a924d 556 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 35 45 3.9E-31 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AP3564_02550 c13a76cd70d830cad04d08987b6a924d 556 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 96 108 3.9E-31 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AP3564_02550 c13a76cd70d830cad04d08987b6a924d 556 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 368 380 3.9E-31 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AP3564_02550 c13a76cd70d830cad04d08987b6a924d 556 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 51 63 3.9E-31 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AP3564_02550 c13a76cd70d830cad04d08987b6a924d 556 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 338 344 3.9E-31 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AP3564_02550 c13a76cd70d830cad04d08987b6a924d 556 SUPERFAMILY SSF51905 20 396 9.18E-34 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_02550 c13a76cd70d830cad04d08987b6a924d 556 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 405 533 4.6E-25 T 13-10-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AP3564_02550 c13a76cd70d830cad04d08987b6a924d 556 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 373 383 - T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AP3564_02550 c13a76cd70d830cad04d08987b6a924d 556 Gene3D G3DSA:1.10.8.870 421 553 1.4E-44 T 13-10-2018 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AP3564_10795 6777759ce00a91b20fa364271fb528fb 376 Pfam PF13556 PucR C-terminal helix-turn-helix domain 312 369 4.9E-19 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain AP3564_10795 6777759ce00a91b20fa364271fb528fb 376 Gene3D G3DSA:1.10.10.2840 252 373 8.7E-19 T 13-10-2018 AP3564_10795 6777759ce00a91b20fa364271fb528fb 376 Pfam PF05651 Putative sugar diacid recognition 3 136 1.2E-45 T 13-10-2018 IPR008599 Putative sugar diacid recognition AP3564_02270 67adb683402eb0a4c39143ac2cfa4995 492 Pfam PF07690 Major Facilitator Superfamily 16 298 3.6E-25 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AP3564_02270 67adb683402eb0a4c39143ac2cfa4995 492 Gene3D G3DSA:1.20.1250.20 3 208 2.7E-33 T 13-10-2018 AP3564_02270 67adb683402eb0a4c39143ac2cfa4995 492 Gene3D G3DSA:1.20.1250.20 274 481 1.5E-24 T 13-10-2018 AP3564_02270 67adb683402eb0a4c39143ac2cfa4995 492 SUPERFAMILY SSF103473 9 473 7.19E-57 T 13-10-2018 IPR036259 MFS transporter superfamily AP3564_02270 67adb683402eb0a4c39143ac2cfa4995 492 Pfam PF11700 Vacuole effluxer Atg22 like 394 473 4.4E-6 T 13-10-2018 IPR024671 Autophagy-related protein 22-like AP3564_16525 8c580ac7957ed092e36668352d07e052 238 Gene3D G3DSA:3.20.20.70 2 237 2.3E-83 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_16525 8c580ac7957ed092e36668352d07e052 238 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 3 234 38.236 T 13-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AP3564_16525 8c580ac7957ed092e36668352d07e052 238 SMART SM00934 5 229 1.3E-88 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AP3564_16525 8c580ac7957ed092e36668352d07e052 238 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 56 69 - T 13-10-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AP3564_16525 8c580ac7957ed092e36668352d07e052 238 SUPERFAMILY SSF51366 1 233 4.99E-68 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AP3564_16525 8c580ac7957ed092e36668352d07e052 238 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 6 229 5.9E-64 T 13-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AP3564_16525 8c580ac7957ed092e36668352d07e052 238 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 5 228 9.2E-48 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AP3564_11275 e5cff0cb15128c920035ffb96d14257a 266 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 106 126 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 AP3564_11275 e5cff0cb15128c920035ffb96d14257a 266 SUPERFAMILY SSF52096 8 265 1.35E-71 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AP3564_11275 e5cff0cb15128c920035ffb96d14257a 266 Gene3D G3DSA:1.10.12.10 207 266 3.8E-28 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal AP3564_11275 e5cff0cb15128c920035ffb96d14257a 266 Gene3D G3DSA:3.90.226.10 3 206 8.0E-75 T 13-10-2018 AP3564_11275 e5cff0cb15128c920035ffb96d14257a 266 Pfam PF00378 Enoyl-CoA hydratase/isomerase 16 265 5.4E-57 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AP3564_03055 a351e5c773e58a6c8fda7ec8de3238ca 287 Pfam PF08282 haloacid dehalogenase-like hydrolase 7 267 9.2E-56 T 13-10-2018 AP3564_03055 a351e5c773e58a6c8fda7ec8de3238ca 287 SUPERFAMILY SSF56784 2 273 1.66E-57 T 13-10-2018 IPR036412 HAD-like superfamily AP3564_03055 a351e5c773e58a6c8fda7ec8de3238ca 287 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 6 266 3.2E-43 T 13-10-2018 IPR000150 Cof family GO:0016787 AP3564_03055 a351e5c773e58a6c8fda7ec8de3238ca 287 Gene3D G3DSA:3.30.1240.10 83 196 4.5E-81 T 13-10-2018 AP3564_03055 a351e5c773e58a6c8fda7ec8de3238ca 287 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 165 241 1.4E-11 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 AP3564_03055 a351e5c773e58a6c8fda7ec8de3238ca 287 Gene3D G3DSA:3.40.50.1000 5 264 4.5E-81 T 13-10-2018 IPR023214 HAD superfamily AP3564_07510 b2a8516966c2ecefffdf18418d8b8990 216 SUPERFAMILY SSF46785 152 198 5.2E-6 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_07510 b2a8516966c2ecefffdf18418d8b8990 216 Gene3D G3DSA:1.10.10.10 152 204 1.2E-5 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_07510 b2a8516966c2ecefffdf18418d8b8990 216 PIRSF PIRSF006171 1 216 8.1E-80 T 13-10-2018 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0000160|GO:0003700 AP3564_07510 b2a8516966c2ecefffdf18418d8b8990 216 SUPERFAMILY SSF52172 2 122 5.69E-32 T 13-10-2018 IPR011006 CheY-like superfamily AP3564_07510 b2a8516966c2ecefffdf18418d8b8990 216 Gene3D G3DSA:3.40.50.2300 1 133 2.2E-30 T 13-10-2018 AP3564_07510 b2a8516966c2ecefffdf18418d8b8990 216 Pfam PF08279 HTH domain 152 190 3.5E-5 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 AP3564_07510 b2a8516966c2ecefffdf18418d8b8990 216 SMART SM00448 1 104 3.6E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_07510 b2a8516966c2ecefffdf18418d8b8990 216 Pfam PF00072 Response regulator receiver domain 2 104 1.3E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_05940 17f14fe49e4daeaf37e14d81e57f541e 347 SUPERFAMILY SSF52540 95 310 2.05E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_05940 17f14fe49e4daeaf37e14d81e57f541e 347 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 104 341 2.1E-85 T 13-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 AP3564_05940 17f14fe49e4daeaf37e14d81e57f541e 347 Hamap MF_02040 Iron-sulfur cluster carrier protein. 96 342 33.563 T 13-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein AP3564_05940 17f14fe49e4daeaf37e14d81e57f541e 347 Gene3D G3DSA:3.40.50.300 97 318 1.0E-66 T 13-10-2018 AP3564_05940 17f14fe49e4daeaf37e14d81e57f541e 347 ProSitePatterns PS01215 Mrp family signature. 207 223 - T 13-10-2018 IPR000808 Mrp, conserved site GO:0005524 AP3564_19285 e475eb17f1b7dd6d0e99098a50105c52 643 SUPERFAMILY SSF55681 245 534 1.97E-98 T 13-10-2018 AP3564_19285 e475eb17f1b7dd6d0e99098a50105c52 643 Gene3D G3DSA:3.30.54.20 133 189 6.5E-68 T 13-10-2018 AP3564_19285 e475eb17f1b7dd6d0e99098a50105c52 643 Gene3D G3DSA:3.30.980.10 72 224 6.5E-68 T 13-10-2018 AP3564_19285 e475eb17f1b7dd6d0e99098a50105c52 643 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 69 643 35.542 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AP3564_19285 e475eb17f1b7dd6d0e99098a50105c52 643 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 327 537 1.4E-36 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_19285 e475eb17f1b7dd6d0e99098a50105c52 643 Gene3D G3DSA:3.40.50.800 541 642 1.1E-33 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily AP3564_19285 e475eb17f1b7dd6d0e99098a50105c52 643 SUPERFAMILY SSF52954 535 633 1.1E-30 T 13-10-2018 AP3564_19285 e475eb17f1b7dd6d0e99098a50105c52 643 Pfam PF02824 TGS domain 5 64 9.8E-15 T 13-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 AP3564_19285 e475eb17f1b7dd6d0e99098a50105c52 643 Pfam PF03129 Anticodon binding domain 549 633 1.0E-23 T 13-10-2018 IPR004154 Anticodon-binding AP3564_19285 e475eb17f1b7dd6d0e99098a50105c52 643 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 172 221 4.1E-17 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 AP3564_19285 e475eb17f1b7dd6d0e99098a50105c52 643 PRINTS PR01047 Threonyl-tRNA synthetase signature 366 389 7.6E-48 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AP3564_19285 e475eb17f1b7dd6d0e99098a50105c52 643 PRINTS PR01047 Threonyl-tRNA synthetase signature 333 361 7.6E-48 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AP3564_19285 e475eb17f1b7dd6d0e99098a50105c52 643 PRINTS PR01047 Threonyl-tRNA synthetase signature 542 554 7.6E-48 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AP3564_19285 e475eb17f1b7dd6d0e99098a50105c52 643 PRINTS PR01047 Threonyl-tRNA synthetase signature 472 500 7.6E-48 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AP3564_19285 e475eb17f1b7dd6d0e99098a50105c52 643 PRINTS PR01047 Threonyl-tRNA synthetase signature 515 528 7.6E-48 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AP3564_19285 e475eb17f1b7dd6d0e99098a50105c52 643 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 75 639 6.4E-244 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AP3564_19285 e475eb17f1b7dd6d0e99098a50105c52 643 SMART SM00863 172 221 6.0E-26 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 AP3564_19285 e475eb17f1b7dd6d0e99098a50105c52 643 SUPERFAMILY SSF81271 5 64 1.42E-18 T 13-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 AP3564_19285 e475eb17f1b7dd6d0e99098a50105c52 643 Gene3D G3DSA:3.10.20.30 2 66 1.4E-28 T 13-10-2018 IPR012675 Beta-grasp domain superfamily AP3564_19285 e475eb17f1b7dd6d0e99098a50105c52 643 Gene3D G3DSA:3.30.930.10 227 540 2.2E-118 T 13-10-2018 AP3564_19285 e475eb17f1b7dd6d0e99098a50105c52 643 SUPERFAMILY SSF55186 67 243 3.27E-68 T 13-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 AP3564_04205 d70699681800f9ca6ac488f90726f519 211 Gene3D G3DSA:2.40.440.10 19 207 1.8E-36 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AP3564_04205 d70699681800f9ca6ac488f90726f519 211 Pfam PF03734 L,D-transpeptidase catalytic domain 33 156 4.1E-20 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AP3564_04205 d70699681800f9ca6ac488f90726f519 211 SUPERFAMILY SSF141523 30 156 6.67E-29 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AP3564_05765 4de73d5b426357f9afa6ff45c09be815 66 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 19.686 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05765 4de73d5b426357f9afa6ff45c09be815 66 SUPERFAMILY SSF46561 1 63 3.01E-24 T 13-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05765 4de73d5b426357f9afa6ff45c09be815 66 ProSitePatterns PS00579 Ribosomal protein L29 signature. 39 53 - T 13-10-2018 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05765 4de73d5b426357f9afa6ff45c09be815 66 Gene3D G3DSA:1.10.287.310 1 66 1.5E-31 T 13-10-2018 AP3564_05765 4de73d5b426357f9afa6ff45c09be815 66 Pfam PF00831 Ribosomal L29 protein 4 60 9.5E-27 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05765 4de73d5b426357f9afa6ff45c09be815 66 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 8.8E-25 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_09700 3fb8b4a7c659eed49ec6b9a2b82dc7bc 310 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 8 293 4.3E-72 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AP3564_09700 3fb8b4a7c659eed49ec6b9a2b82dc7bc 310 Gene3D G3DSA:3.40.50.1100 6 303 2.2E-119 T 13-10-2018 AP3564_09700 3fb8b4a7c659eed49ec6b9a2b82dc7bc 310 TIGRFAM TIGR01139 cysK: cysteine synthase A 8 307 1.8E-134 T 13-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 AP3564_09700 3fb8b4a7c659eed49ec6b9a2b82dc7bc 310 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 33 51 - T 13-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 AP3564_09700 3fb8b4a7c659eed49ec6b9a2b82dc7bc 310 TIGRFAM TIGR01136 cysKM: cysteine synthase 8 307 1.7E-127 T 13-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 AP3564_09700 3fb8b4a7c659eed49ec6b9a2b82dc7bc 310 Gene3D G3DSA:3.40.50.1100 45 144 2.2E-119 T 13-10-2018 AP3564_09700 3fb8b4a7c659eed49ec6b9a2b82dc7bc 310 SUPERFAMILY SSF53686 1 307 4.06E-102 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AP3564_00500 a4dfe97eb63314b222f434cf589928d9 683 Gene3D G3DSA:3.40.930.10 538 682 1.5E-45 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 AP3564_00500 a4dfe97eb63314b222f434cf589928d9 683 Pfam PF00874 PRD domain 299 387 1.2E-19 T 13-10-2018 IPR011608 PRD domain GO:0006355 AP3564_00500 a4dfe97eb63314b222f434cf589928d9 683 Gene3D G3DSA:1.10.10.10 4 151 4.7E-5 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_00500 a4dfe97eb63314b222f434cf589928d9 683 Gene3D G3DSA:1.10.1790.10 292 389 3.7E-13 T 13-10-2018 AP3564_00500 a4dfe97eb63314b222f434cf589928d9 683 SUPERFAMILY SSF52794 399 481 3.4E-5 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 AP3564_00500 a4dfe97eb63314b222f434cf589928d9 683 SUPERFAMILY SSF63520 290 389 2.75E-19 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 AP3564_00500 a4dfe97eb63314b222f434cf589928d9 683 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 542 678 1.4E-27 T 13-10-2018 IPR002178 PTS EIIA type-2 domain AP3564_00500 a4dfe97eb63314b222f434cf589928d9 683 SUPERFAMILY SSF55804 537 678 2.49E-30 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 AP3564_00500 a4dfe97eb63314b222f434cf589928d9 683 Pfam PF05043 Mga helix-turn-helix domain 85 160 2.5E-5 T 13-10-2018 IPR007737 Mga helix-turn-helix domain AP3564_08385 767fa1a3409ba014ab056ec195defb56 110 PIRSF PIRSF000025 1 110 4.4E-36 T 13-10-2018 IPR012218 Cytochrome c, Bacillus subtilis c550-related GO:0005506|GO:0009055|GO:0016021|GO:0020037 AP3564_08385 767fa1a3409ba014ab056ec195defb56 110 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 38 106 2.5E-13 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_08385 767fa1a3409ba014ab056ec195defb56 110 SUPERFAMILY SSF46626 4 109 6.16E-18 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AP3564_08385 767fa1a3409ba014ab056ec195defb56 110 Gene3D G3DSA:1.10.760.10 40 110 3.5E-30 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AP3564_13505 c3ce72edf737e6e1ea2f70cc6df65d20 200 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 83 195 2.6E-24 T 13-10-2018 IPR039538 BetI-type transcriptional repressor, C-terminal AP3564_13505 c3ce72edf737e6e1ea2f70cc6df65d20 200 SUPERFAMILY SSF46689 3 81 8.98E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_13505 c3ce72edf737e6e1ea2f70cc6df65d20 200 Gene3D G3DSA:1.10.357.10 3 199 4.4E-55 T 13-10-2018 AP3564_13505 c3ce72edf737e6e1ea2f70cc6df65d20 200 ProSitePatterns PS01081 TetR-type HTH domain signature. 26 57 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AP3564_13505 c3ce72edf737e6e1ea2f70cc6df65d20 200 SUPERFAMILY SSF48498 80 196 4.64E-24 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AP3564_13505 c3ce72edf737e6e1ea2f70cc6df65d20 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 57 9.8E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_15985 3eddb25ec941027f5980437490bbb769 119 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 3 107 29.127 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 AP3564_15985 3eddb25ec941027f5980437490bbb769 119 Gene3D G3DSA:3.30.300.20 1 116 2.0E-42 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta AP3564_15985 3eddb25ec941027f5980437490bbb769 119 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 3 113 1.7E-43 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 AP3564_15985 3eddb25ec941027f5980437490bbb769 119 ProSitePatterns PS01319 Ribosome-binding factor A signature. 73 94 - T 13-10-2018 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 AP3564_15985 3eddb25ec941027f5980437490bbb769 119 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 7 94 4.0E-39 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 AP3564_15985 3eddb25ec941027f5980437490bbb769 119 Pfam PF02033 Ribosome-binding factor A 4 107 2.3E-35 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 AP3564_15985 3eddb25ec941027f5980437490bbb769 119 SUPERFAMILY SSF89919 2 110 3.4E-37 T 13-10-2018 IPR023799 Ribosome-binding factor A domain superfamily AP3564_11160 89432c955d20954a1f421388c87f9a60 232 SMART SM00530 11 66 9.1E-18 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AP3564_11160 89432c955d20954a1f421388c87f9a60 232 SUPERFAMILY SSF47413 2 70 4.83E-18 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AP3564_11160 89432c955d20954a1f421388c87f9a60 232 Pfam PF01381 Helix-turn-helix 12 62 8.2E-16 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AP3564_11160 89432c955d20954a1f421388c87f9a60 232 Gene3D G3DSA:1.10.260.40 2 69 7.6E-19 T 13-10-2018 AP3564_04760 e4961c7b68340704e66113882a19f5e5 148 Gene3D G3DSA:3.40.5.10 1 52 1.2E-26 T 13-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_04760 e4961c7b68340704e66113882a19f5e5 148 Pfam PF03948 Ribosomal protein L9, C-terminal domain 63 146 1.2E-32 T 13-10-2018 IPR020069 Ribosomal protein L9, C-terminal AP3564_04760 e4961c7b68340704e66113882a19f5e5 148 Gene3D G3DSA:3.10.430.100 60 148 8.0E-35 T 13-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily AP3564_04760 e4961c7b68340704e66113882a19f5e5 148 SUPERFAMILY SSF55658 1 57 3.49E-19 T 13-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal AP3564_04760 e4961c7b68340704e66113882a19f5e5 148 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 148 7.6E-56 T 13-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_04760 e4961c7b68340704e66113882a19f5e5 148 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 13-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_04760 e4961c7b68340704e66113882a19f5e5 148 SUPERFAMILY SSF55653 56 148 1.7E-31 T 13-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily AP3564_04760 e4961c7b68340704e66113882a19f5e5 148 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 47 3.7E-24 T 13-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_04760 e4961c7b68340704e66113882a19f5e5 148 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 148 27.583 T 13-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_07750 403f379c6adbe9377f44eec054703b8c 356 Gene3D G3DSA:3.90.1210.10 292 356 4.9E-24 T 13-10-2018 AP3564_07750 403f379c6adbe9377f44eec054703b8c 356 Pfam PF03102 NeuB family 24 289 7.3E-102 T 13-10-2018 IPR013132 N-acetylneuraminic acid synthase, N-terminal GO:0016051 Reactome: R-HSA-4085001 AP3564_07750 403f379c6adbe9377f44eec054703b8c 356 SUPERFAMILY SSF51269 295 355 8.24E-21 T 13-10-2018 IPR036732 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain superfamily Reactome: R-HSA-4085001 AP3564_07750 403f379c6adbe9377f44eec054703b8c 356 Pfam PF08666 SAF domain 304 355 2.3E-6 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AP3564_07750 403f379c6adbe9377f44eec054703b8c 356 TIGRFAM TIGR03569 NeuB_NnaB: N-acetylneuraminate synthase 4 355 7.9E-157 T 13-10-2018 IPR020007 N-acetylneuraminate synthase KEGG: 00520+2.5.1.101|MetaCyc: PWY-6749|MetaCyc: PWY-7131 AP3564_07750 403f379c6adbe9377f44eec054703b8c 356 Gene3D G3DSA:3.20.20.70 1 289 1.1E-104 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_07750 403f379c6adbe9377f44eec054703b8c 356 SUPERFAMILY SSF51569 3 313 3.54E-89 T 13-10-2018 AP3564_17540 e596fe867b402c4ec9a39ec13661af18 272 SUPERFAMILY SSF53167 3 272 5.63E-98 T 13-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 AP3564_17540 e596fe867b402c4ec9a39ec13661af18 272 Gene3D G3DSA:3.40.50.1580 1 272 5.0E-117 T 13-10-2018 AP3564_17540 e596fe867b402c4ec9a39ec13661af18 272 TIGRFAM TIGR01697 PNPH-PUNA-XAPA: inosine/guanosine/xanthosine phosphorylase family 23 269 1.7E-110 T 13-10-2018 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 AP3564_17540 e596fe867b402c4ec9a39ec13661af18 272 PIRSF PIRSF000477 1 272 8.1E-115 T 13-10-2018 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 AP3564_17540 e596fe867b402c4ec9a39ec13661af18 272 TIGRFAM TIGR01700 PNPH: purine nucleoside phosphorylase I, inosine and guanosine-specific 24 270 3.9E-113 T 13-10-2018 IPR011270 Purine nucleoside phosphorylase I, inosine/guanosine-specific GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 AP3564_17540 e596fe867b402c4ec9a39ec13661af18 272 Pfam PF01048 Phosphorylase superfamily 24 270 3.0E-57 T 13-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AP3564_08530 c4bdbef85265ee9a7f252568b6f2d5d7 212 Gene3D G3DSA:1.10.150.240 18 80 3.1E-52 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 AP3564_08530 c4bdbef85265ee9a7f252568b6f2d5d7 212 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 3 14 2.2E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AP3564_08530 c4bdbef85265ee9a7f252568b6f2d5d7 212 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 125 141 2.2E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AP3564_08530 c4bdbef85265ee9a7f252568b6f2d5d7 212 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 94 107 2.2E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AP3564_08530 c4bdbef85265ee9a7f252568b6f2d5d7 212 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 181 1.0E-53 T 13-10-2018 AP3564_08530 c4bdbef85265ee9a7f252568b6f2d5d7 212 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 61 180 4.0E-10 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AP3564_08530 c4bdbef85265ee9a7f252568b6f2d5d7 212 SUPERFAMILY SSF56784 1 210 1.44E-60 T 13-10-2018 IPR036412 HAD-like superfamily AP3564_08530 c4bdbef85265ee9a7f252568b6f2d5d7 212 Hamap MF_01250 Pyrophosphatase PpaX [ppaX]. 1 212 44.781 T 13-10-2018 IPR023733 Pyrophosphatase PpaX GO:0016462 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AP3564_08530 c4bdbef85265ee9a7f252568b6f2d5d7 212 Gene3D G3DSA:3.40.50.1000 6 185 3.1E-52 T 13-10-2018 IPR023214 HAD superfamily AP3564_08530 c4bdbef85265ee9a7f252568b6f2d5d7 212 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 57 175 1.2E-12 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AP3564_06350 8fdf40eb5ad9fdaea20cf75be9698b07 144 Pfam PF03061 Thioesterase superfamily 21 103 2.1E-11 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AP3564_06350 8fdf40eb5ad9fdaea20cf75be9698b07 144 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 9 128 8.5E-22 T 13-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 AP3564_06350 8fdf40eb5ad9fdaea20cf75be9698b07 144 PIRSF PIRSF003230 2 141 8.4E-21 T 13-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 AP3564_06350 8fdf40eb5ad9fdaea20cf75be9698b07 144 SUPERFAMILY SSF54637 3 139 5.56E-35 T 13-10-2018 IPR029069 HotDog domain superfamily AP3564_06350 8fdf40eb5ad9fdaea20cf75be9698b07 144 Gene3D G3DSA:3.10.129.10 2 140 4.4E-35 T 13-10-2018 AP3564_17175 eb24319b102f651ea5d7d4342cf69a0a 364 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 1 360 67.13 T 13-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 AP3564_17175 eb24319b102f651ea5d7d4342cf69a0a 364 PIRSF PIRSF001455 3 363 5.0E-110 T 13-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 AP3564_17175 eb24319b102f651ea5d7d4342cf69a0a 364 Pfam PF01761 3-dehydroquinate synthase 69 325 9.5E-99 T 13-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 AP3564_17175 eb24319b102f651ea5d7d4342cf69a0a 364 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 13 349 5.7E-119 T 13-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 AP3564_17175 eb24319b102f651ea5d7d4342cf69a0a 364 SUPERFAMILY SSF56796 4 355 4.84E-106 T 13-10-2018 AP3564_17175 eb24319b102f651ea5d7d4342cf69a0a 364 Gene3D G3DSA:1.20.1090.10 174 360 6.0E-55 T 13-10-2018 AP3564_17175 eb24319b102f651ea5d7d4342cf69a0a 364 Gene3D G3DSA:3.40.50.1970 1 173 2.8E-65 T 13-10-2018 AP3564_06940 f3e028cfca2384427156222626cc63c8 335 SUPERFAMILY SSF55326 16 143 5.23E-36 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AP3564_06940 f3e028cfca2384427156222626cc63c8 335 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 5 326 2.9E-107 T 13-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 AP3564_06940 f3e028cfca2384427156222626cc63c8 335 Gene3D G3DSA:3.30.1330.10 3 148 1.2E-44 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AP3564_06940 f3e028cfca2384427156222626cc63c8 335 Pfam PF02769 AIR synthase related protein, C-terminal domain 154 304 3.6E-11 T 13-10-2018 IPR010918 PurM-like, C-terminal domain AP3564_06940 f3e028cfca2384427156222626cc63c8 335 Pfam PF00586 AIR synthase related protein, N-terminal domain 29 142 2.7E-23 T 13-10-2018 IPR016188 PurM-like, N-terminal domain AP3564_06940 f3e028cfca2384427156222626cc63c8 335 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 4 326 28.857 T 13-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 AP3564_06940 f3e028cfca2384427156222626cc63c8 335 SUPERFAMILY SSF56042 148 310 1.64E-30 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AP3564_06940 f3e028cfca2384427156222626cc63c8 335 PIRSF PIRSF005303 1 326 8.1E-100 T 13-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 AP3564_06940 f3e028cfca2384427156222626cc63c8 335 Gene3D G3DSA:3.90.650.10 149 326 8.4E-48 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AP3564_02840 5f1d6f6249b7692d862c3dbe2ffe53b3 157 SUPERFAMILY SSF52833 47 151 2.32E-24 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AP3564_02840 5f1d6f6249b7692d862c3dbe2ffe53b3 157 Gene3D G3DSA:3.40.30.10 48 152 1.4E-22 T 13-10-2018 AP3564_02840 5f1d6f6249b7692d862c3dbe2ffe53b3 157 Pfam PF00085 Thioredoxin 60 151 6.1E-15 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 AP3564_02840 5f1d6f6249b7692d862c3dbe2ffe53b3 157 ProSitePatterns PS00194 Thioredoxin family active site. 73 91 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AP3564_07500 9270ea8bff6bd9eb2f6cbae8e1323012 460 Gene3D G3DSA:3.50.50.60 154 276 3.0E-108 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_07500 9270ea8bff6bd9eb2f6cbae8e1323012 460 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 425 445 3.5E-69 T 13-10-2018 AP3564_07500 9270ea8bff6bd9eb2f6cbae8e1323012 460 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 338 359 3.5E-69 T 13-10-2018 AP3564_07500 9270ea8bff6bd9eb2f6cbae8e1323012 460 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 3.5E-69 T 13-10-2018 AP3564_07500 9270ea8bff6bd9eb2f6cbae8e1323012 460 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 3.5E-69 T 13-10-2018 AP3564_07500 9270ea8bff6bd9eb2f6cbae8e1323012 460 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 138 147 3.5E-69 T 13-10-2018 AP3564_07500 9270ea8bff6bd9eb2f6cbae8e1323012 460 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 303 310 3.5E-69 T 13-10-2018 AP3564_07500 9270ea8bff6bd9eb2f6cbae8e1323012 460 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 174 199 3.5E-69 T 13-10-2018 AP3564_07500 9270ea8bff6bd9eb2f6cbae8e1323012 460 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 263 277 3.5E-69 T 13-10-2018 AP3564_07500 9270ea8bff6bd9eb2f6cbae8e1323012 460 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 403 418 3.5E-69 T 13-10-2018 AP3564_07500 9270ea8bff6bd9eb2f6cbae8e1323012 460 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 288 310 7.1E-38 T 13-10-2018 AP3564_07500 9270ea8bff6bd9eb2f6cbae8e1323012 460 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 135 153 7.1E-38 T 13-10-2018 AP3564_07500 9270ea8bff6bd9eb2f6cbae8e1323012 460 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 174 192 7.1E-38 T 13-10-2018 AP3564_07500 9270ea8bff6bd9eb2f6cbae8e1323012 460 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 262 278 7.1E-38 T 13-10-2018 AP3564_07500 9270ea8bff6bd9eb2f6cbae8e1323012 460 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 7.1E-38 T 13-10-2018 AP3564_07500 9270ea8bff6bd9eb2f6cbae8e1323012 460 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 342 447 4.6E-35 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AP3564_07500 9270ea8bff6bd9eb2f6cbae8e1323012 460 PIRSF PIRSF000350 1 457 1.6E-100 T 13-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 AP3564_07500 9270ea8bff6bd9eb2f6cbae8e1323012 460 SUPERFAMILY SSF51905 2 333 1.42E-61 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_07500 9270ea8bff6bd9eb2f6cbae8e1323012 460 SUPERFAMILY SSF55424 338 456 3.09E-38 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AP3564_07500 9270ea8bff6bd9eb2f6cbae8e1323012 460 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 4 458 2.9E-163 T 13-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 AP3564_07500 9270ea8bff6bd9eb2f6cbae8e1323012 460 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 323 5.3E-70 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AP3564_07500 9270ea8bff6bd9eb2f6cbae8e1323012 460 Gene3D G3DSA:3.30.390.30 336 456 9.5E-42 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AP3564_07500 9270ea8bff6bd9eb2f6cbae8e1323012 460 Gene3D G3DSA:3.50.50.60 5 329 3.0E-108 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_07500 9270ea8bff6bd9eb2f6cbae8e1323012 460 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 13-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 AP3564_12080 edc9b9b954bf9b11fa98deb2f7e68dc9 569 Pfam PF00449 Urease alpha-subunit, N-terminal domain 4 121 5.3E-57 T 13-10-2018 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AP3564_12080 edc9b9b954bf9b11fa98deb2f7e68dc9 569 ProSitePatterns PS01120 Urease nickel ligands signature. 129 142 - T 13-10-2018 IPR029754 Urease nickel binding site GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AP3564_12080 edc9b9b954bf9b11fa98deb2f7e68dc9 569 SUPERFAMILY SSF51556 131 569 1.42E-205 T 13-10-2018 IPR032466 Metal-dependent hydrolase AP3564_12080 edc9b9b954bf9b11fa98deb2f7e68dc9 569 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 429 442 1.7E-34 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AP3564_12080 edc9b9b954bf9b11fa98deb2f7e68dc9 569 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 297 314 1.7E-34 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AP3564_12080 edc9b9b954bf9b11fa98deb2f7e68dc9 569 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 403 418 1.7E-34 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AP3564_12080 edc9b9b954bf9b11fa98deb2f7e68dc9 569 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 336 352 1.7E-34 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AP3564_12080 edc9b9b954bf9b11fa98deb2f7e68dc9 569 SUPERFAMILY SSF51338 5 476 3.36E-61 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AP3564_12080 edc9b9b954bf9b11fa98deb2f7e68dc9 569 Gene3D G3DSA:2.30.40.10 4 482 5.7E-303 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AP3564_12080 edc9b9b954bf9b11fa98deb2f7e68dc9 569 TIGRFAM TIGR01792 urease_alph: urease, alpha subunit 4 569 0.0 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AP3564_12080 edc9b9b954bf9b11fa98deb2f7e68dc9 569 Gene3D G3DSA:3.20.20.140 131 551 5.7E-303 T 13-10-2018 AP3564_12080 edc9b9b954bf9b11fa98deb2f7e68dc9 569 ProSitePatterns PS00145 Urease active site. 319 335 - T 13-10-2018 IPR017950 Urease active site GO:0009039 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AP3564_12080 edc9b9b954bf9b11fa98deb2f7e68dc9 569 Pfam PF01979 Amidohydrolase family 127 455 3.4E-86 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AP3564_12080 edc9b9b954bf9b11fa98deb2f7e68dc9 569 Hamap MF_01953 Urease subunit alpha [ureC]. 3 569 58.83 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AP3564_06055 8641cace6585b81535d824852e69bbda 272 TIGRFAM TIGR00159 TIGR00159: TIGR00159 family protein 4 255 1.2E-103 T 13-10-2018 IPR034701 Diadenylate cyclase CdaA GO:0004016|GO:0006171 AP3564_06055 8641cace6585b81535d824852e69bbda 272 SUPERFAMILY SSF143597 40 240 4.71E-73 T 13-10-2018 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily AP3564_06055 8641cace6585b81535d824852e69bbda 272 PIRSF PIRSF004793 4 269 3.4E-98 T 13-10-2018 IPR014046 Diadenylate cyclase GO:0004016|GO:0006171 AP3564_06055 8641cace6585b81535d824852e69bbda 272 Pfam PF02457 DisA bacterial checkpoint controller nucleotide-binding 118 235 7.8E-45 T 13-10-2018 IPR003390 DNA integrity scanning protein, DisA, N-terminal AP3564_06055 8641cace6585b81535d824852e69bbda 272 Hamap MF_01499 Diadenylate cyclase [dacA]. 1 254 35.069 T 13-10-2018 IPR034701 Diadenylate cyclase CdaA GO:0004016|GO:0006171 AP3564_06055 8641cace6585b81535d824852e69bbda 272 Gene3D G3DSA:3.40.1700.10 101 254 1.3E-63 T 13-10-2018 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily AP3564_05110 531da41b9982c08f95dfe4020a499161 206 TIGRFAM TIGR00334 5S_RNA_mat_M5: ribonuclease M5 8 181 1.7E-64 T 13-10-2018 IPR004466 Ribonuclease M5 GO:0043822 AP3564_05110 531da41b9982c08f95dfe4020a499161 206 SUPERFAMILY SSF110455 7 120 4.18E-36 T 13-10-2018 AP3564_05110 531da41b9982c08f95dfe4020a499161 206 Pfam PF13662 Toprim domain 10 76 7.8E-9 T 13-10-2018 IPR006171 TOPRIM domain AP3564_05110 531da41b9982c08f95dfe4020a499161 206 Gene3D G3DSA:3.40.1360.20 6 123 5.8E-26 T 13-10-2018 AP3564_05110 531da41b9982c08f95dfe4020a499161 206 Pfam PF13331 Domain of unknown function (DUF4093) 99 182 1.1E-28 T 13-10-2018 IPR025156 Ribonuclease M5, C-terminal domain AP3564_05110 531da41b9982c08f95dfe4020a499161 206 SMART SM00493 10 83 7.3E-12 T 13-10-2018 IPR006171 TOPRIM domain AP3564_05110 531da41b9982c08f95dfe4020a499161 206 Hamap MF_01469 Ribonuclease M5 [rnmV]. 9 184 32.833 T 13-10-2018 IPR004466 Ribonuclease M5 GO:0043822 AP3564_03190 9783ad28ff782b4c265bebc4dcb6e6f8 245 SMART SM00849 18 211 3.6E-11 T 13-10-2018 IPR001279 Metallo-beta-lactamase AP3564_03190 9783ad28ff782b4c265bebc4dcb6e6f8 245 Gene3D G3DSA:3.60.15.10 1 243 6.5E-89 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AP3564_03190 9783ad28ff782b4c265bebc4dcb6e6f8 245 SUPERFAMILY SSF56281 1 243 2.41E-56 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AP3564_03190 9783ad28ff782b4c265bebc4dcb6e6f8 245 Pfam PF12706 Beta-lactamase superfamily domain 30 211 3.2E-21 T 13-10-2018 IPR001279 Metallo-beta-lactamase AP3564_04640 592b911d8c3875a3d04b3e82974935c0 281 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 4 26 1.0E-6 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_04640 592b911d8c3875a3d04b3e82974935c0 281 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 102 110 1.0E-6 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_04640 592b911d8c3875a3d04b3e82974935c0 281 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 245 263 1.0E-6 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_04640 592b911d8c3875a3d04b3e82974935c0 281 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 155 262 4.8E-8 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AP3564_04640 592b911d8c3875a3d04b3e82974935c0 281 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 123 4.2E-6 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AP3564_04640 592b911d8c3875a3d04b3e82974935c0 281 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 1.3E-8 T 13-10-2018 AP3564_04640 592b911d8c3875a3d04b3e82974935c0 281 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 208 224 1.3E-8 T 13-10-2018 AP3564_04640 592b911d8c3875a3d04b3e82974935c0 281 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 101 119 1.3E-8 T 13-10-2018 AP3564_04640 592b911d8c3875a3d04b3e82974935c0 281 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 235 257 1.3E-8 T 13-10-2018 AP3564_04640 592b911d8c3875a3d04b3e82974935c0 281 SUPERFAMILY SSF51905 3 258 1.4E-18 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_04640 592b911d8c3875a3d04b3e82974935c0 281 Gene3D G3DSA:3.50.50.60 143 216 9.7E-14 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_04640 592b911d8c3875a3d04b3e82974935c0 281 Gene3D G3DSA:3.50.50.60 217 260 9.7E-14 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_04640 592b911d8c3875a3d04b3e82974935c0 281 Gene3D G3DSA:3.50.50.60 1 119 4.2E-8 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_00515 658d117e4fd4e805af6cf7fd411d18e7 420 PIRSF PIRSF006304 4 420 6.9E-167 T 13-10-2018 IPR013853 Galactitol permease IIC component GO:0015577|GO:0015796 AP3564_00515 658d117e4fd4e805af6cf7fd411d18e7 420 TIGRFAM TIGR00827 EIIC-GAT: PTS system, galactitol-specific IIC component 11 417 8.0E-190 T 13-10-2018 IPR013853 Galactitol permease IIC component GO:0015577|GO:0015796 AP3564_00515 658d117e4fd4e805af6cf7fd411d18e7 420 Pfam PF03611 PTS system sugar-specific permease component 11 393 3.3E-89 T 13-10-2018 IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 AP3564_02685 172e4c21a8530e47a70d72a2017fdd2e 549 SMART SM00387 432 548 1.8E-26 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_02685 172e4c21a8530e47a70d72a2017fdd2e 549 Gene3D G3DSA:3.30.450.20 200 312 2.2E-12 T 13-10-2018 AP3564_02685 172e4c21a8530e47a70d72a2017fdd2e 549 Pfam PF00512 His Kinase A (phospho-acceptor) domain 326 388 4.6E-16 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AP3564_02685 172e4c21a8530e47a70d72a2017fdd2e 549 SMART SM00065 56 202 1.9E-10 T 13-10-2018 IPR003018 GAF domain GO:0005515 AP3564_02685 172e4c21a8530e47a70d72a2017fdd2e 549 Pfam PF13185 GAF domain 55 193 5.5E-12 T 13-10-2018 IPR003018 GAF domain GO:0005515 AP3564_02685 172e4c21a8530e47a70d72a2017fdd2e 549 SUPERFAMILY SSF55874 380 546 4.32E-38 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_02685 172e4c21a8530e47a70d72a2017fdd2e 549 SMART SM00388 324 390 2.5E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AP3564_02685 172e4c21a8530e47a70d72a2017fdd2e 549 Gene3D G3DSA:3.30.565.10 392 549 5.9E-40 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_02685 172e4c21a8530e47a70d72a2017fdd2e 549 Pfam PF13426 PAS domain 217 308 3.6E-7 T 13-10-2018 IPR000014 PAS domain AP3564_02685 172e4c21a8530e47a70d72a2017fdd2e 549 Gene3D G3DSA:3.30.450.40 55 199 5.1E-30 T 13-10-2018 IPR029016 GAF-like domain superfamily AP3564_02685 172e4c21a8530e47a70d72a2017fdd2e 549 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 434 546 3.0E-20 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_02685 172e4c21a8530e47a70d72a2017fdd2e 549 Gene3D G3DSA:1.10.287.130 313 389 7.9E-24 T 13-10-2018 AP3564_02685 172e4c21a8530e47a70d72a2017fdd2e 549 SUPERFAMILY SSF55781 35 200 2.62E-23 T 13-10-2018 AP3564_02685 172e4c21a8530e47a70d72a2017fdd2e 549 PRINTS PR00344 Bacterial sensor protein C-terminal signature 477 491 2.0E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_02685 172e4c21a8530e47a70d72a2017fdd2e 549 PRINTS PR00344 Bacterial sensor protein C-terminal signature 508 526 2.0E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_02685 172e4c21a8530e47a70d72a2017fdd2e 549 PRINTS PR00344 Bacterial sensor protein C-terminal signature 495 505 2.0E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_02685 172e4c21a8530e47a70d72a2017fdd2e 549 PRINTS PR00344 Bacterial sensor protein C-terminal signature 532 545 2.0E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_02685 172e4c21a8530e47a70d72a2017fdd2e 549 SUPERFAMILY SSF47384 321 388 2.35E-14 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AP3564_02685 172e4c21a8530e47a70d72a2017fdd2e 549 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 206 316 4.3E-9 T 13-10-2018 IPR000014 PAS domain AP3564_02685 172e4c21a8530e47a70d72a2017fdd2e 549 SUPERFAMILY SSF55785 213 311 5.76E-9 T 13-10-2018 IPR035965 PAS domain superfamily AP3564_02685 172e4c21a8530e47a70d72a2017fdd2e 549 SMART SM00091 206 269 5.8E-5 T 13-10-2018 IPR000014 PAS domain AP3564_07745 d1050e7472e8218c2723eff1d2aa8064 385 Gene3D G3DSA:3.40.50.2000 191 354 1.7E-92 T 13-10-2018 AP3564_07745 d1050e7472e8218c2723eff1d2aa8064 385 SUPERFAMILY SSF53756 3 372 1.36E-97 T 13-10-2018 AP3564_07745 d1050e7472e8218c2723eff1d2aa8064 385 TIGRFAM TIGR03568 NeuC_NnaA: UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing 4 367 9.3E-146 T 13-10-2018 IPR020004 UDP-N-acetylglucosamine 2-epimerase,UDP-hydrolysing GO:0004553|GO:0006047 Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 AP3564_07745 d1050e7472e8218c2723eff1d2aa8064 385 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 24 368 1.9E-91 T 13-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 AP3564_07745 d1050e7472e8218c2723eff1d2aa8064 385 Gene3D G3DSA:3.40.50.2000 5 366 1.7E-92 T 13-10-2018 AP3564_15085 a43f857bac9d9abeaddfb5c1ccd7e901 131 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 1 125 24.34 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 AP3564_15085 a43f857bac9d9abeaddfb5c1ccd7e901 131 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 4 18 1.9E-13 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 AP3564_15085 a43f857bac9d9abeaddfb5c1ccd7e901 131 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 75 83 1.9E-13 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 AP3564_15085 a43f857bac9d9abeaddfb5c1ccd7e901 131 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 84 93 1.9E-13 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 AP3564_15085 a43f857bac9d9abeaddfb5c1ccd7e901 131 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 1 124 2.5E-45 T 13-10-2018 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L AP3564_15085 a43f857bac9d9abeaddfb5c1ccd7e901 131 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 1 126 6.4E-54 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 AP3564_15085 a43f857bac9d9abeaddfb5c1ccd7e901 131 SUPERFAMILY SSF81330 10 120 1.03E-33 T 13-10-2018 IPR036019 Gated mechanosensitive channel AP3564_15085 a43f857bac9d9abeaddfb5c1ccd7e901 131 Gene3D G3DSA:1.10.1200.120 1 127 3.6E-41 T 13-10-2018 IPR036019 Gated mechanosensitive channel AP3564_15085 a43f857bac9d9abeaddfb5c1ccd7e901 131 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 11 24 - T 13-10-2018 IPR019823 Large-conductance mechanosensitive channel, conserved site AP3564_19420 3a10846c7e1594e09bed7417188b37a0 312 Gene3D G3DSA:3.90.1640.10 1 197 2.2E-62 T 13-10-2018 AP3564_19420 3a10846c7e1594e09bed7417188b37a0 312 SUPERFAMILY SSF64182 13 303 2.22E-78 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily AP3564_19420 3a10846c7e1594e09bed7417188b37a0 312 Pfam PF01368 DHH family 15 153 1.9E-13 T 13-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AP3564_19420 3a10846c7e1594e09bed7417188b37a0 312 Pfam PF02272 DHHA1 domain 179 308 5.3E-17 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 AP3564_19420 3a10846c7e1594e09bed7417188b37a0 312 Gene3D G3DSA:3.10.310.30 199 311 8.6E-37 T 13-10-2018 AP3564_12445 ac3f32d3b82eb6384d4af8f1ab190e71 686 Pfam PF03190 Protein of unknown function, DUF255 8 168 2.4E-79 T 13-10-2018 IPR004879 Domain of unknown function DUF255 AP3564_12445 ac3f32d3b82eb6384d4af8f1ab190e71 686 Gene3D G3DSA:1.50.10.10 219 337 9.5E-7 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 AP3564_12445 ac3f32d3b82eb6384d4af8f1ab190e71 686 Gene3D G3DSA:1.50.10.10 379 600 1.2E-10 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 AP3564_12445 ac3f32d3b82eb6384d4af8f1ab190e71 686 Gene3D G3DSA:3.40.30.10 5 176 1.1E-74 T 13-10-2018 AP3564_12445 ac3f32d3b82eb6384d4af8f1ab190e71 686 SUPERFAMILY SSF48208 190 544 2.11E-83 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 AP3564_12445 ac3f32d3b82eb6384d4af8f1ab190e71 686 SUPERFAMILY SSF52833 5 150 9.06E-37 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AP3564_12445 ac3f32d3b82eb6384d4af8f1ab190e71 686 PIRSF PIRSF006402 1 686 2.8E-254 T 13-10-2018 IPR024705 Spermatogenesis-associated protein 20 AP3564_12445 ac3f32d3b82eb6384d4af8f1ab190e71 686 Pfam PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) 424 520 0.18 T 13-10-2018 AP3564_09765 a9be77c09a36efefb2aa0626cec41fcd 272 PIRSF PIRSF012562 1 264 3.4E-129 T 13-10-2018 IPR010838 Protein of unknown unction DUF1444 AP3564_09765 a9be77c09a36efefb2aa0626cec41fcd 272 Pfam PF07285 Protein of unknown function (DUF1444) 1 263 4.4E-128 T 13-10-2018 IPR010838 Protein of unknown unction DUF1444 AP3564_09765 a9be77c09a36efefb2aa0626cec41fcd 272 Hamap MF_01548 UPF0354 protein . 1 264 45.859 T 13-10-2018 IPR010838 Protein of unknown unction DUF1444 AP3564_06775 0b8854dfd8a9b1f601af18db29cc7592 475 Pfam PF03703 Bacterial PH domain 247 321 2.4E-16 T 13-10-2018 IPR005182 Domain of unknown function DUF304 AP3564_06775 0b8854dfd8a9b1f601af18db29cc7592 475 Pfam PF03703 Bacterial PH domain 387 466 4.9E-7 T 13-10-2018 IPR005182 Domain of unknown function DUF304 AP3564_06775 0b8854dfd8a9b1f601af18db29cc7592 475 Pfam PF03703 Bacterial PH domain 62 142 1.6E-21 T 13-10-2018 IPR005182 Domain of unknown function DUF304 AP3564_06775 0b8854dfd8a9b1f601af18db29cc7592 475 PIRSF PIRSF026631 1 475 2.5E-127 T 13-10-2018 IPR014529 Uncharacterised conserved protein UCP026631 AP3564_17790 238568fa7477ef32f10b491d68d4c539 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 1.1E-35 T 13-10-2018 AP3564_17790 238568fa7477ef32f10b491d68d4c539 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 271 287 1.1E-35 T 13-10-2018 AP3564_17790 238568fa7477ef32f10b491d68d4c539 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 299 321 1.1E-35 T 13-10-2018 AP3564_17790 238568fa7477ef32f10b491d68d4c539 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 144 162 1.1E-35 T 13-10-2018 AP3564_17790 238568fa7477ef32f10b491d68d4c539 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 183 201 1.1E-35 T 13-10-2018 AP3564_17790 238568fa7477ef32f10b491d68d4c539 473 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 354 462 1.4E-34 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AP3564_17790 238568fa7477ef32f10b491d68d4c539 473 Gene3D G3DSA:3.50.50.60 163 285 2.1E-110 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_17790 238568fa7477ef32f10b491d68d4c539 473 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 4 473 2.0E-173 T 13-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 AP3564_17790 238568fa7477ef32f10b491d68d4c539 473 Gene3D G3DSA:3.30.390.30 353 473 2.3E-43 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AP3564_17790 238568fa7477ef32f10b491d68d4c539 473 SUPERFAMILY SSF55424 350 472 5.5E-40 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AP3564_17790 238568fa7477ef32f10b491d68d4c539 473 Gene3D G3DSA:3.50.50.60 5 341 2.1E-110 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_17790 238568fa7477ef32f10b491d68d4c539 473 SUPERFAMILY SSF51905 2 343 8.47E-58 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_17790 238568fa7477ef32f10b491d68d4c539 473 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 13-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 AP3564_17790 238568fa7477ef32f10b491d68d4c539 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 4.4E-69 T 13-10-2018 AP3564_17790 238568fa7477ef32f10b491d68d4c539 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 314 321 4.4E-69 T 13-10-2018 AP3564_17790 238568fa7477ef32f10b491d68d4c539 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 156 4.4E-69 T 13-10-2018 AP3564_17790 238568fa7477ef32f10b491d68d4c539 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 415 430 4.4E-69 T 13-10-2018 AP3564_17790 238568fa7477ef32f10b491d68d4c539 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 272 286 4.4E-69 T 13-10-2018 AP3564_17790 238568fa7477ef32f10b491d68d4c539 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 4.4E-69 T 13-10-2018 AP3564_17790 238568fa7477ef32f10b491d68d4c539 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 183 208 4.4E-69 T 13-10-2018 AP3564_17790 238568fa7477ef32f10b491d68d4c539 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 350 371 4.4E-69 T 13-10-2018 AP3564_17790 238568fa7477ef32f10b491d68d4c539 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 437 457 4.4E-69 T 13-10-2018 AP3564_17790 238568fa7477ef32f10b491d68d4c539 473 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 334 1.2E-63 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AP3564_17790 238568fa7477ef32f10b491d68d4c539 473 PIRSF PIRSF000350 1 471 4.5E-89 T 13-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 AP3564_11310 907b4e857665350e3ecbd58577be8901 129 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 75 2.2E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_11310 907b4e857665350e3ecbd58577be8901 129 SMART SM00345 16 75 5.1E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_11310 907b4e857665350e3ecbd58577be8901 129 Gene3D G3DSA:1.10.10.10 9 128 2.7E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_11310 907b4e857665350e3ecbd58577be8901 129 SUPERFAMILY SSF46785 5 77 6.74E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_04235 19176f6c8db706a0860c8ae0935e0554 87 SUPERFAMILY SSF51230 5 77 1.33E-8 T 13-10-2018 IPR011053 Single hybrid motif AP3564_04235 19176f6c8db706a0860c8ae0935e0554 87 Gene3D G3DSA:2.40.50.100 3 80 4.3E-9 T 13-10-2018 AP3564_04235 19176f6c8db706a0860c8ae0935e0554 87 Pfam PF13533 Biotin-lipoyl like 47 79 8.8E-6 T 13-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain AP3564_16010 ec42b0320ba6de61ee0c947112de8819 373 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 373 31.061 T 13-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 AP3564_16010 ec42b0320ba6de61ee0c947112de8819 373 Pfam PF08529 NusA N-terminal domain 5 123 2.2E-46 T 13-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 AP3564_16010 ec42b0320ba6de61ee0c947112de8819 373 SUPERFAMILY SSF54814 199 276 2.94E-31 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 AP3564_16010 ec42b0320ba6de61ee0c947112de8819 373 Gene3D G3DSA:3.30.300.20 277 372 5.9E-34 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta AP3564_16010 ec42b0320ba6de61ee0c947112de8819 373 Pfam PF13184 NusA-like KH domain 229 296 1.3E-28 T 13-10-2018 IPR025249 KH domain, NusA-like GO:0003723 AP3564_16010 ec42b0320ba6de61ee0c947112de8819 373 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 5 341 2.0E-134 T 13-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 AP3564_16010 ec42b0320ba6de61ee0c947112de8819 373 Gene3D G3DSA:3.30.1480.10 1 124 1.6E-50 T 13-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 AP3564_16010 ec42b0320ba6de61ee0c947112de8819 373 Pfam PF00575 S1 RNA binding domain 133 193 6.7E-11 T 13-10-2018 IPR003029 S1 domain GO:0003676 AP3564_16010 ec42b0320ba6de61ee0c947112de8819 373 SMART SM00316 133 199 1.0E-10 T 13-10-2018 IPR022967 RNA-binding domain, S1 AP3564_16010 ec42b0320ba6de61ee0c947112de8819 373 SUPERFAMILY SSF54814 278 342 7.19E-17 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 AP3564_16010 ec42b0320ba6de61ee0c947112de8819 373 SUPERFAMILY SSF69705 1 126 3.14E-45 T 13-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 AP3564_16010 ec42b0320ba6de61ee0c947112de8819 373 SUPERFAMILY SSF50249 132 198 3.28E-19 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_16010 ec42b0320ba6de61ee0c947112de8819 373 Gene3D G3DSA:3.30.300.20 198 276 4.6E-35 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta AP3564_16010 ec42b0320ba6de61ee0c947112de8819 373 Gene3D G3DSA:2.40.50.140 136 197 2.0E-24 T 13-10-2018 AP3564_16010 ec42b0320ba6de61ee0c947112de8819 373 SMART SM00322 229 301 1.7E-5 T 13-10-2018 IPR004087 K Homology domain GO:0003676 AP3564_16010 ec42b0320ba6de61ee0c947112de8819 373 SMART SM00322 302 356 5.6 T 13-10-2018 IPR004087 K Homology domain GO:0003676 AP3564_12670 2de0bcad6f38dff281e3db3f4a6ae035 490 SUPERFAMILY SSF55904 342 486 2.48E-41 T 13-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 AP3564_12670 2de0bcad6f38dff281e3db3f4a6ae035 490 Gene3D G3DSA:3.40.640.10 6 273 4.0E-93 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_12670 2de0bcad6f38dff281e3db3f4a6ae035 490 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 383 459 5.0E-11 T 13-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 AP3564_12670 2de0bcad6f38dff281e3db3f4a6ae035 490 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 221 235 - T 13-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 AP3564_12670 2de0bcad6f38dff281e3db3f4a6ae035 490 SUPERFAMILY SSF53383 6 385 1.13E-94 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_12670 2de0bcad6f38dff281e3db3f4a6ae035 490 Gene3D G3DSA:3.90.105.10 420 476 7.8E-19 T 13-10-2018 AP3564_12670 2de0bcad6f38dff281e3db3f4a6ae035 490 Gene3D G3DSA:3.90.1150.10 274 419 1.0E-5 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_12670 2de0bcad6f38dff281e3db3f4a6ae035 490 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 6 369 6.8E-112 T 13-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 AP3564_15970 d34e9b4e5a62538e26ed1397d7cab3c9 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 10 88 2.0E-34 T 13-10-2018 AP3564_15970 d34e9b4e5a62538e26ed1397d7cab3c9 89 SUPERFAMILY SSF47060 3 89 5.59E-37 T 13-10-2018 IPR009068 S15/NS1, RNA-binding AP3564_15970 d34e9b4e5a62538e26ed1397d7cab3c9 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 13-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_15970 d34e9b4e5a62538e26ed1397d7cab3c9 89 Pfam PF00312 Ribosomal protein S15 8 88 2.4E-38 T 13-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_15970 d34e9b4e5a62538e26ed1397d7cab3c9 89 Gene3D G3DSA:1.10.287.10 2 89 8.7E-38 T 13-10-2018 AP3564_15970 d34e9b4e5a62538e26ed1397d7cab3c9 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 23.199 T 13-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_15970 d34e9b4e5a62538e26ed1397d7cab3c9 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 4 89 2.5E-42 T 13-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_15970 d34e9b4e5a62538e26ed1397d7cab3c9 89 SMART SM01387 8 88 1.9E-52 T 13-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_06315 913ccf1d06c4d017a55813e0d357285d 219 Gene3D G3DSA:1.10.3720.10 4 217 1.0E-51 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_06315 913ccf1d06c4d017a55813e0d357285d 219 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 32 217 1.9E-21 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AP3564_06315 913ccf1d06c4d017a55813e0d357285d 219 SUPERFAMILY SSF161098 14 203 4.58E-40 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_06315 913ccf1d06c4d017a55813e0d357285d 219 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 112 3.6E-24 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AP3564_04990 0ec47b7f8b7f27d732a706a006d7160a 162 SUPERFAMILY SSF53927 2 153 6.52E-54 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 AP3564_04990 0ec47b7f8b7f27d732a706a006d7160a 162 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 8 149 46.331 T 13-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 AP3564_04990 0ec47b7f8b7f27d732a706a006d7160a 162 Pfam PF14437 MafB19-like deaminase 4 149 3.4E-39 T 13-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 AP3564_04990 0ec47b7f8b7f27d732a706a006d7160a 162 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 53 90 - T 13-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 AP3564_04990 0ec47b7f8b7f27d732a706a006d7160a 162 Gene3D G3DSA:3.40.140.10 1 162 1.5E-60 T 13-10-2018 AP3564_16740 0a4e76b77d7f2754aa170cf4a9847c03 159 Pfam PF13508 Acetyltransferase (GNAT) domain 50 130 6.3E-10 T 13-10-2018 IPR000182 GNAT domain AP3564_16740 0a4e76b77d7f2754aa170cf4a9847c03 159 Gene3D G3DSA:3.40.630.30 1 156 2.3E-61 T 13-10-2018 AP3564_16740 0a4e76b77d7f2754aa170cf4a9847c03 159 PIRSF PIRSF037732 1 158 6.8E-88 T 13-10-2018 IPR017274 Putative N-acetyltransferase YlbP AP3564_16740 0a4e76b77d7f2754aa170cf4a9847c03 159 Hamap MF_00824 Uncharacterized N-acetyltransferase . 1 148 43.975 T 13-10-2018 IPR017274 Putative N-acetyltransferase YlbP AP3564_16740 0a4e76b77d7f2754aa170cf4a9847c03 159 SUPERFAMILY SSF55729 25 140 2.83E-17 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase AP3564_07735 b1e9a8220584d4e77770c07185e8cc3f 336 SUPERFAMILY SSF51735 9 328 2.46E-94 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_07735 b1e9a8220584d4e77770c07185e8cc3f 336 Gene3D G3DSA:3.90.25.10 189 323 9.2E-92 T 13-10-2018 AP3564_07735 b1e9a8220584d4e77770c07185e8cc3f 336 Pfam PF16363 GDP-mannose 4,6 dehydratase 11 310 4.7E-73 T 13-10-2018 IPR016040 NAD(P)-binding domain AP3564_07735 b1e9a8220584d4e77770c07185e8cc3f 336 TIGRFAM TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family 10 303 7.6E-164 T 13-10-2018 IPR026390 NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family AP3564_07735 b1e9a8220584d4e77770c07185e8cc3f 336 Gene3D G3DSA:3.40.50.720 10 310 9.2E-92 T 13-10-2018 AP3564_12895 186fa5404a054cabf0598fbeac8c2e90 459 Pfam PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF 3 92 1.3E-30 T 13-10-2018 IPR031341 Ribosomal RNA small subunit methyltransferase F, N-terminal Reactome: R-HSA-6790901|Reactome: R-HSA-8869496 AP3564_12895 186fa5404a054cabf0598fbeac8c2e90 459 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 173 184 - T 13-10-2018 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 AP3564_12895 186fa5404a054cabf0598fbeac8c2e90 459 Pfam PF01189 16S rRNA methyltransferase RsmB/F 97 300 2.6E-52 T 13-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 AP3564_12895 186fa5404a054cabf0598fbeac8c2e90 459 Gene3D G3DSA:3.40.50.150 93 397 1.1E-104 T 13-10-2018 AP3564_12895 186fa5404a054cabf0598fbeac8c2e90 459 Pfam PF13636 RNA-binding PUA-like domain of methyltransferase RsmF 409 456 1.4E-17 T 13-10-2018 IPR027391 rRNA small subunit methyltransferase F, RNA-binding PUA-like domain AP3564_12895 186fa5404a054cabf0598fbeac8c2e90 459 Pfam PF17126 RsmF rRNA methyltransferase first C-terminal domain 330 390 2.0E-21 T 13-10-2018 IPR031340 Ribosomal RNA small subunit methyltransferase F, first C-terminal domain AP3564_12895 186fa5404a054cabf0598fbeac8c2e90 459 Gene3D G3DSA:3.30.70.3130 2 91 1.9E-30 T 13-10-2018 AP3564_12895 186fa5404a054cabf0598fbeac8c2e90 459 TIGRFAM TIGR00446 nop2p: NOL1/NOP2/sun family putative RNA methylase 35 302 4.9E-75 T 13-10-2018 IPR011023 Nop2p GO:0003723|GO:0006364|GO:0008757 Reactome: R-HSA-6790901|Reactome: R-HSA-8869496 AP3564_12895 186fa5404a054cabf0598fbeac8c2e90 459 SUPERFAMILY SSF53335 3 302 1.14E-67 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_12895 186fa5404a054cabf0598fbeac8c2e90 459 Gene3D G3DSA:2.30.130.60 400 458 3.4E-21 T 13-10-2018 AP3564_12895 186fa5404a054cabf0598fbeac8c2e90 459 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 78 92 2.1E-27 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AP3564_12895 186fa5404a054cabf0598fbeac8c2e90 459 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 285 302 2.1E-27 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AP3564_12895 186fa5404a054cabf0598fbeac8c2e90 459 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 224 240 2.1E-27 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AP3564_12895 186fa5404a054cabf0598fbeac8c2e90 459 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 107 117 2.1E-27 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AP3564_12895 186fa5404a054cabf0598fbeac8c2e90 459 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 174 186 2.1E-27 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AP3564_08635 60c67e1c02395711bb9df28a18e54569 504 Gene3D G3DSA:3.30.750.70 250 323 8.1E-7 T 13-10-2018 AP3564_08635 60c67e1c02395711bb9df28a18e54569 504 Pfam PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain 18 214 5.8E-20 T 13-10-2018 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 AP3564_08635 60c67e1c02395711bb9df28a18e54569 504 Gene3D G3DSA:3.40.1080.20 338 479 5.3E-43 T 13-10-2018 IPR038460 Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily AP3564_08635 60c67e1c02395711bb9df28a18e54569 504 Pfam PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain 324 465 3.7E-44 T 13-10-2018 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain AP3564_08635 60c67e1c02395711bb9df28a18e54569 504 TIGRFAM TIGR03458 YgfH_subfam: succinate CoA transferase 14 496 1.4E-230 T 13-10-2018 IPR017821 Succinate CoA transferase GO:0006084|GO:0016740 AP3564_08635 60c67e1c02395711bb9df28a18e54569 504 SUPERFAMILY SSF100950 6 224 8.38E-66 T 13-10-2018 IPR037171 NagB/RpiA transferase-like AP3564_08635 60c67e1c02395711bb9df28a18e54569 504 SUPERFAMILY SSF100950 227 497 4.19E-86 T 13-10-2018 IPR037171 NagB/RpiA transferase-like AP3564_08635 60c67e1c02395711bb9df28a18e54569 504 Gene3D G3DSA:3.40.1080.10 15 176 9.0E-14 T 13-10-2018 AP3564_17160 03cd06f2831850bc8f3b61eca0ce6e5c 338 Gene3D G3DSA:1.20.970.10 3 67 5.1E-22 T 13-10-2018 AP3564_17160 03cd06f2831850bc8f3b61eca0ce6e5c 338 Pfam PF02885 Glycosyl transferase family, helical bundle domain 2 62 2.2E-20 T 13-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 AP3564_17160 03cd06f2831850bc8f3b61eca0ce6e5c 338 Pfam PF00591 Glycosyl transferase family, a/b domain 72 323 2.2E-101 T 13-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AP3564_17160 03cd06f2831850bc8f3b61eca0ce6e5c 338 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 5 329 3.0E-132 T 13-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 AP3564_17160 03cd06f2831850bc8f3b61eca0ce6e5c 338 Gene3D G3DSA:3.40.1030.10 69 336 2.5E-106 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 AP3564_17160 03cd06f2831850bc8f3b61eca0ce6e5c 338 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 3 332 39.5 T 13-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 AP3564_17160 03cd06f2831850bc8f3b61eca0ce6e5c 338 SUPERFAMILY SSF52418 72 330 1.44E-92 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 AP3564_17160 03cd06f2831850bc8f3b61eca0ce6e5c 338 SUPERFAMILY SSF47648 1 67 7.2E-19 T 13-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 AP3564_06590 d2b2b4971b5d7c010d4275cdf5956062 255 PRINTS PR00377 Inositol monophosphatase superfamily signature 79 95 9.7E-38 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AP3564_06590 d2b2b4971b5d7c010d4275cdf5956062 255 PRINTS PR00377 Inositol monophosphatase superfamily signature 59 75 9.7E-38 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AP3564_06590 d2b2b4971b5d7c010d4275cdf5956062 255 PRINTS PR00377 Inositol monophosphatase superfamily signature 37 57 9.7E-38 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AP3564_06590 d2b2b4971b5d7c010d4275cdf5956062 255 PRINTS PR00377 Inositol monophosphatase superfamily signature 128 151 9.7E-38 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AP3564_06590 d2b2b4971b5d7c010d4275cdf5956062 255 PRINTS PR00377 Inositol monophosphatase superfamily signature 207 231 9.7E-38 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AP3564_06590 d2b2b4971b5d7c010d4275cdf5956062 255 PRINTS PR00377 Inositol monophosphatase superfamily signature 176 197 9.7E-38 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AP3564_06590 d2b2b4971b5d7c010d4275cdf5956062 255 Gene3D G3DSA:3.30.540.10 1 138 1.9E-43 T 13-10-2018 AP3564_06590 d2b2b4971b5d7c010d4275cdf5956062 255 Pfam PF00459 Inositol monophosphatase family 4 230 2.1E-56 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AP3564_06590 d2b2b4971b5d7c010d4275cdf5956062 255 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 210 224 - T 13-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 AP3564_06590 d2b2b4971b5d7c010d4275cdf5956062 255 Gene3D G3DSA:3.40.190.80 141 254 2.8E-20 T 13-10-2018 AP3564_06590 d2b2b4971b5d7c010d4275cdf5956062 255 SUPERFAMILY SSF56655 2 230 4.71E-65 T 13-10-2018 AP3564_06590 d2b2b4971b5d7c010d4275cdf5956062 255 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 79 91 - T 13-10-2018 IPR020583 Inositol monophosphatase, metal-binding site AP3564_10835 c780b832315f423b13c3622673154f7d 376 TIGRFAM TIGR02678 TIGR02678: TIGR02678 family protein 2 364 5.5E-113 T 13-10-2018 IPR013494 Conserved hypothetical protein CHP02678 AP3564_10835 c780b832315f423b13c3622673154f7d 376 Pfam PF09661 Protein of unknown function (DUF2398) 2 360 5.2E-108 T 13-10-2018 IPR013494 Conserved hypothetical protein CHP02678 AP3564_02285 c7f3245d355c25cb6c7d355bdfd63543 230 TIGRFAM TIGR03717 R_switched_YjbE: integral membrane protein, YjbE family 10 183 5.4E-71 T 13-10-2018 IPR022301 Integral membrane protein YjbE AP3564_02285 c7f3245d355c25cb6c7d355bdfd63543 230 Pfam PF03741 Integral membrane protein TerC family 13 182 1.4E-45 T 13-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 AP3564_13310 ec14b2e23c51d197fb28b4a5bb377b00 105 SMART SM00530 10 65 7.0E-12 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AP3564_13310 ec14b2e23c51d197fb28b4a5bb377b00 105 Gene3D G3DSA:1.25.40.10 3 105 3.3E-18 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AP3564_13310 ec14b2e23c51d197fb28b4a5bb377b00 105 Pfam PF01381 Helix-turn-helix 11 63 2.5E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AP3564_13310 ec14b2e23c51d197fb28b4a5bb377b00 105 SUPERFAMILY SSF47413 1 72 9.86E-17 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AP3564_17045 068f0b9dd4669456961a65ac48539169 107 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 25 104 1.8E-20 T 13-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core AP3564_17045 068f0b9dd4669456961a65ac48539169 107 SUPERFAMILY SSF101386 4 104 3.76E-29 T 13-10-2018 AP3564_17045 068f0b9dd4669456961a65ac48539169 107 Gene3D G3DSA:1.10.287.1080 2 107 2.9E-37 T 13-10-2018 AP3564_17045 068f0b9dd4669456961a65ac48539169 107 PIRSF PIRSF029904 1 107 4.2E-54 T 13-10-2018 IPR012359 NTP pyrophosphohydrolase MazG-related, YpjD AP3564_04575 1a52968a642ab28f5feae1bd40015d28 315 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 149 314 5.5E-39 T 13-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 AP3564_04575 1a52968a642ab28f5feae1bd40015d28 315 PRINTS PR00086 L-lactate dehydrogenase signature 8 32 3.7E-47 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AP3564_04575 1a52968a642ab28f5feae1bd40015d28 315 PRINTS PR00086 L-lactate dehydrogenase signature 120 140 3.7E-47 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AP3564_04575 1a52968a642ab28f5feae1bd40015d28 315 PRINTS PR00086 L-lactate dehydrogenase signature 174 187 3.7E-47 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AP3564_04575 1a52968a642ab28f5feae1bd40015d28 315 PRINTS PR00086 L-lactate dehydrogenase signature 33 57 3.7E-47 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AP3564_04575 1a52968a642ab28f5feae1bd40015d28 315 PRINTS PR00086 L-lactate dehydrogenase signature 144 162 3.7E-47 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AP3564_04575 1a52968a642ab28f5feae1bd40015d28 315 ProSitePatterns PS00064 L-lactate dehydrogenase active site. 176 182 - T 13-10-2018 IPR018177 L-lactate dehydrogenase, active site GO:0004459|GO:0055114 KEGG: 00010+1.1.1.27|KEGG: 00270+1.1.1.27|KEGG: 00620+1.1.1.27|KEGG: 00640+1.1.1.27|MetaCyc: PWY-5481|MetaCyc: PWY-6901|Reactome: R-HSA-70268 AP3564_04575 1a52968a642ab28f5feae1bd40015d28 315 Hamap MF_00488 L-lactate dehydrogenase [ldh]. 6 315 47.245 T 13-10-2018 IPR011304 L-lactate dehydrogenase GO:0004459|GO:0005737|GO:0055114 KEGG: 00010+1.1.1.27|KEGG: 00270+1.1.1.27|KEGG: 00620+1.1.1.27|KEGG: 00640+1.1.1.27|MetaCyc: PWY-5481|MetaCyc: PWY-6901|Reactome: R-HSA-70268 AP3564_04575 1a52968a642ab28f5feae1bd40015d28 315 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 8 146 3.0E-49 T 13-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 AP3564_04575 1a52968a642ab28f5feae1bd40015d28 315 Gene3D G3DSA:3.90.110.10 149 315 1.6E-63 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AP3564_04575 1a52968a642ab28f5feae1bd40015d28 315 SUPERFAMILY SSF51735 5 146 7.04E-58 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_04575 1a52968a642ab28f5feae1bd40015d28 315 SUPERFAMILY SSF56327 147 314 1.44E-57 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AP3564_04575 1a52968a642ab28f5feae1bd40015d28 315 Gene3D G3DSA:3.40.50.720 1 148 1.2E-61 T 13-10-2018 AP3564_04575 1a52968a642ab28f5feae1bd40015d28 315 TIGRFAM TIGR01771 L-LDH-NAD: L-lactate dehydrogenase 11 309 5.6E-135 T 13-10-2018 IPR011304 L-lactate dehydrogenase GO:0004459|GO:0005737|GO:0055114 KEGG: 00010+1.1.1.27|KEGG: 00270+1.1.1.27|KEGG: 00620+1.1.1.27|KEGG: 00640+1.1.1.27|MetaCyc: PWY-5481|MetaCyc: PWY-6901|Reactome: R-HSA-70268 AP3564_04575 1a52968a642ab28f5feae1bd40015d28 315 PIRSF PIRSF000102 3 315 6.3E-116 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AP3564_01355 adff89a287df261965caee9ff904b634 316 SUPERFAMILY SSF81345 7 311 2.22E-53 T 13-10-2018 IPR037294 ABC transporter, BtuC-like AP3564_01355 adff89a287df261965caee9ff904b634 316 Gene3D G3DSA:1.10.3470.10 4 315 2.0E-51 T 13-10-2018 IPR037294 ABC transporter, BtuC-like AP3564_01355 adff89a287df261965caee9ff904b634 316 Pfam PF01032 FecCD transport family 33 311 1.1E-46 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 AP3564_17635 59553d06ff822a0e42f4e3c2f3f61b67 418 SUPERFAMILY SSF100879 259 356 1.67E-14 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AP3564_17635 59553d06ff822a0e42f4e3c2f3f61b67 418 Gene3D G3DSA:3.30.1490.100 257 363 2.8E-14 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AP3564_17635 59553d06ff822a0e42f4e3c2f3f61b67 418 Pfam PF11799 impB/mucB/samB family C-terminal domain 257 362 2.7E-16 T 13-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AP3564_17635 59553d06ff822a0e42f4e3c2f3f61b67 418 SUPERFAMILY SSF56672 9 247 5.25E-53 T 13-10-2018 AP3564_17635 59553d06ff822a0e42f4e3c2f3f61b67 418 Gene3D G3DSA:1.10.150.20 190 242 4.1E-17 T 13-10-2018 AP3564_17635 59553d06ff822a0e42f4e3c2f3f61b67 418 Gene3D G3DSA:3.30.70.270 11 172 2.3E-28 T 13-10-2018 AP3564_17635 59553d06ff822a0e42f4e3c2f3f61b67 418 Pfam PF11798 IMS family HHH motif 178 210 9.1E-8 T 13-10-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 AP3564_17635 59553d06ff822a0e42f4e3c2f3f61b67 418 Pfam PF00817 impB/mucB/samB family 14 163 1.4E-24 T 13-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AP3564_17635 59553d06ff822a0e42f4e3c2f3f61b67 418 Gene3D G3DSA:2.30.40.20 30 82 2.3E-28 T 13-10-2018 AP3564_17235 6418d921d9f42f88d70b462f606a8156 492 TIGRFAM TIGR02836 spore_IV_A: stage IV sporulation protein A 1 492 1.8E-268 T 13-10-2018 IPR014201 Sporulation stage IV, protein A GO:0005524|GO:0016887|GO:0043934 KEGG: 00230+3.6.1.3 AP3564_17235 6418d921d9f42f88d70b462f606a8156 492 SUPERFAMILY SSF52540 19 238 9.77E-15 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_17235 6418d921d9f42f88d70b462f606a8156 492 PIRSF PIRSF007466 1 492 7.2E-272 T 13-10-2018 IPR014201 Sporulation stage IV, protein A GO:0005524|GO:0016887|GO:0043934 KEGG: 00230+3.6.1.3 AP3564_17235 6418d921d9f42f88d70b462f606a8156 492 Pfam PF09547 Stage IV sporulation protein A (spore_IV_A) 2 492 6.7E-229 T 13-10-2018 IPR014201 Sporulation stage IV, protein A GO:0005524|GO:0016887|GO:0043934 KEGG: 00230+3.6.1.3 AP3564_17235 6418d921d9f42f88d70b462f606a8156 492 Gene3D G3DSA:3.40.50.300 12 235 1.7E-10 T 13-10-2018 AP3564_12965 ef8d43bd5153c4f24d8456ea8489cc68 234 Gene3D G3DSA:3.40.50.1580 2 233 6.4E-71 T 13-10-2018 AP3564_12965 ef8d43bd5153c4f24d8456ea8489cc68 234 SUPERFAMILY SSF53167 2 232 5.76E-90 T 13-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 AP3564_12965 ef8d43bd5153c4f24d8456ea8489cc68 234 Pfam PF01048 Phosphorylase superfamily 16 221 8.1E-41 T 13-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AP3564_12965 ef8d43bd5153c4f24d8456ea8489cc68 234 TIGRFAM TIGR00107 deoD: purine nucleoside phosphorylase 4 232 3.0E-106 T 13-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 AP3564_12965 ef8d43bd5153c4f24d8456ea8489cc68 234 Hamap MF_01627 Purine nucleoside phosphorylase DeoD-type [deoD]. 1 233 46.787 T 13-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 AP3564_12965 ef8d43bd5153c4f24d8456ea8489cc68 234 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 61 76 - T 13-10-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 AP3564_09640 0f67f5afa6fbffa3bf446e769fefa47e 208 Pfam PF13241 Putative NAD(P)-binding 6 113 8.3E-32 T 13-10-2018 AP3564_09640 0f67f5afa6fbffa3bf446e769fefa47e 208 SUPERFAMILY SSF51735 2 109 2.79E-20 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_09640 0f67f5afa6fbffa3bf446e769fefa47e 208 Gene3D G3DSA:3.40.50.720 2 128 4.7E-43 T 13-10-2018 AP3564_09640 0f67f5afa6fbffa3bf446e769fefa47e 208 SUPERFAMILY SSF75615 112 201 4.45E-18 T 13-10-2018 AP3564_09640 0f67f5afa6fbffa3bf446e769fefa47e 208 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 7 203 8.8E-45 T 13-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AP3564_09640 0f67f5afa6fbffa3bf446e769fefa47e 208 Gene3D G3DSA:1.10.8.610 130 202 4.3E-14 T 13-10-2018 AP3564_07180 d8ef60169dbab500dbd9adfb5272a2a5 469 Gene3D G3DSA:3.30.70.2740 337 418 6.3E-17 T 13-10-2018 AP3564_07180 d8ef60169dbab500dbd9adfb5272a2a5 469 Pfam PF01565 FAD binding domain 42 181 1.4E-38 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AP3564_07180 d8ef60169dbab500dbd9adfb5272a2a5 469 SUPERFAMILY SSF55103 223 461 1.31E-69 T 13-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AP3564_07180 d8ef60169dbab500dbd9adfb5272a2a5 469 Gene3D G3DSA:1.10.45.10 419 459 8.4E-13 T 13-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 AP3564_07180 d8ef60169dbab500dbd9adfb5272a2a5 469 Pfam PF02913 FAD linked oxidases, C-terminal domain 217 458 2.1E-73 T 13-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 AP3564_07180 d8ef60169dbab500dbd9adfb5272a2a5 469 Gene3D G3DSA:3.30.465.40 4 237 1.0E-71 T 13-10-2018 AP3564_07180 d8ef60169dbab500dbd9adfb5272a2a5 469 SUPERFAMILY SSF56176 7 218 7.48E-67 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AP3564_05135 4fb6497093bbcd22cde331e64e57cb48 289 Pfam PF00288 GHMP kinases N terminal domain 87 144 3.8E-11 T 13-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 AP3564_05135 4fb6497093bbcd22cde331e64e57cb48 289 SUPERFAMILY SSF55060 161 281 1.47E-32 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily AP3564_05135 4fb6497093bbcd22cde331e64e57cb48 289 SUPERFAMILY SSF54211 4 157 2.96E-48 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AP3564_05135 4fb6497093bbcd22cde331e64e57cb48 289 Gene3D G3DSA:3.30.230.10 1 158 6.4E-60 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AP3564_05135 4fb6497093bbcd22cde331e64e57cb48 289 Pfam PF08544 GHMP kinases C terminal 197 270 3.6E-9 T 13-10-2018 IPR013750 GHMP kinase, C-terminal domain AP3564_05135 4fb6497093bbcd22cde331e64e57cb48 289 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 2 287 2.8E-114 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 AP3564_05135 4fb6497093bbcd22cde331e64e57cb48 289 Gene3D G3DSA:3.30.70.890 162 284 7.9E-29 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily AP3564_05135 4fb6497093bbcd22cde331e64e57cb48 289 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 3 279 35.598 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 AP3564_05135 4fb6497093bbcd22cde331e64e57cb48 289 PIRSF PIRSF010376 2 286 2.5E-97 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 AP3564_01685 48c65eab93e99a7fc54b833ee750a3f3 555 Pfam PF01609 Transposase DDE domain 236 489 1.2E-15 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_01685 48c65eab93e99a7fc54b833ee750a3f3 555 SUPERFAMILY SSF53098 268 499 1.59E-12 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_06195 48c65eab93e99a7fc54b833ee750a3f3 555 Pfam PF01609 Transposase DDE domain 236 489 1.2E-15 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_06195 48c65eab93e99a7fc54b833ee750a3f3 555 SUPERFAMILY SSF53098 268 499 1.59E-12 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_08765 c57781bd3b32e683569fd1dab68ce4e3 340 Gene3D G3DSA:3.40.50.1360 90 339 2.3E-89 T 13-10-2018 AP3564_08765 c57781bd3b32e683569fd1dab68ce4e3 340 Pfam PF04198 Putative sugar-binding domain 92 337 7.5E-76 T 13-10-2018 IPR007324 Sugar-binding domain, putative GO:0030246 AP3564_08765 c57781bd3b32e683569fd1dab68ce4e3 340 SUPERFAMILY SSF46785 19 83 2.83E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_08765 c57781bd3b32e683569fd1dab68ce4e3 340 SUPERFAMILY SSF100950 90 337 1.0E-73 T 13-10-2018 IPR037171 NagB/RpiA transferase-like AP3564_08765 c57781bd3b32e683569fd1dab68ce4e3 340 Gene3D G3DSA:1.10.10.10 17 89 4.6E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_13400 c173ae693f4d8aac9fdab6a6a9dcdee5 306 Gene3D G3DSA:3.90.110.10 141 302 4.3E-31 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AP3564_13400 c173ae693f4d8aac9fdab6a6a9dcdee5 306 SUPERFAMILY SSF56327 144 300 2.74E-24 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AP3564_13400 c173ae693f4d8aac9fdab6a6a9dcdee5 306 PIRSF PIRSF000102 1 306 2.1E-59 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AP3564_13400 c173ae693f4d8aac9fdab6a6a9dcdee5 306 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 2 139 1.6E-25 T 13-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 AP3564_13400 c173ae693f4d8aac9fdab6a6a9dcdee5 306 SUPERFAMILY SSF51735 3 140 8.25E-29 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_13400 c173ae693f4d8aac9fdab6a6a9dcdee5 306 Gene3D G3DSA:3.40.50.720 1 140 9.1E-36 T 13-10-2018 AP3564_13400 c173ae693f4d8aac9fdab6a6a9dcdee5 306 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 144 300 1.2E-10 T 13-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 AP3564_13400 c173ae693f4d8aac9fdab6a6a9dcdee5 306 PRINTS PR00086 L-lactate dehydrogenase signature 167 180 3.1E-12 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AP3564_13400 c173ae693f4d8aac9fdab6a6a9dcdee5 306 PRINTS PR00086 L-lactate dehydrogenase signature 4 28 3.1E-12 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AP3564_13400 c173ae693f4d8aac9fdab6a6a9dcdee5 306 PRINTS PR00086 L-lactate dehydrogenase signature 113 133 3.1E-12 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AP3564_13400 c173ae693f4d8aac9fdab6a6a9dcdee5 306 PRINTS PR00086 L-lactate dehydrogenase signature 29 53 3.1E-12 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AP3564_03995 0f494fb2af9ff63aca2112a3781ae447 356 SMART SM00937 63 177 3.5E-64 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 AP3564_03995 0f494fb2af9ff63aca2112a3781ae447 356 Gene3D G3DSA:3.30.160.20 209 295 4.3E-97 T 13-10-2018 AP3564_03995 0f494fb2af9ff63aca2112a3781ae447 356 Pfam PF03462 PCRF domain 9 202 2.3E-75 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 AP3564_03995 0f494fb2af9ff63aca2112a3781ae447 356 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 226 242 - T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AP3564_03995 0f494fb2af9ff63aca2112a3781ae447 356 Gene3D G3DSA:1.20.58.410 3 101 3.9E-8 T 13-10-2018 AP3564_03995 0f494fb2af9ff63aca2112a3781ae447 356 Gene3D G3DSA:3.30.70.1660 110 340 4.3E-97 T 13-10-2018 AP3564_03995 0f494fb2af9ff63aca2112a3781ae447 356 Pfam PF00472 RF-1 domain 210 319 5.4E-41 T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AP3564_03995 0f494fb2af9ff63aca2112a3781ae447 356 SUPERFAMILY SSF75620 8 351 1.7E-135 T 13-10-2018 AP3564_03995 0f494fb2af9ff63aca2112a3781ae447 356 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 1 355 40.764 T 13-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 AP3564_03995 0f494fb2af9ff63aca2112a3781ae447 356 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 2 353 8.0E-172 T 13-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 AP3564_10610 2d19755e273170692a1b1c71ed22a046 712 SUPERFAMILY SSF81665 150 694 5.1E-20 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 AP3564_10610 2d19755e273170692a1b1c71ed22a046 712 Gene3D G3DSA:2.70.150.20 187 304 1.1E-36 T 13-10-2018 AP3564_10610 2d19755e273170692a1b1c71ed22a046 712 ProSitePatterns PS01047 Heavy-metal-associated domain. 18 47 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AP3564_10610 2d19755e273170692a1b1c71ed22a046 712 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 151 461 1.4E-98 T 13-10-2018 AP3564_10610 2d19755e273170692a1b1c71ed22a046 712 Pfam PF00702 haloacid dehalogenase-like hydrolase 398 616 7.4E-47 T 13-10-2018 AP3564_10610 2d19755e273170692a1b1c71ed22a046 712 SUPERFAMILY SSF56784 399 705 8.25E-57 T 13-10-2018 IPR036412 HAD-like superfamily AP3564_10610 2d19755e273170692a1b1c71ed22a046 712 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 132 707 1.6E-125 T 13-10-2018 AP3564_10610 2d19755e273170692a1b1c71ed22a046 712 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 403 409 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 AP3564_10610 2d19755e273170692a1b1c71ed22a046 712 SUPERFAMILY SSF55008 12 66 3.67E-11 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 AP3564_10610 2d19755e273170692a1b1c71ed22a046 712 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 173 684 4.7E-96 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AP3564_10610 2d19755e273170692a1b1c71ed22a046 712 SUPERFAMILY SSF81653 203 300 2.35E-26 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 AP3564_10610 2d19755e273170692a1b1c71ed22a046 712 Pfam PF00403 Heavy-metal-associated domain 15 65 2.6E-10 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AP3564_10610 2d19755e273170692a1b1c71ed22a046 712 Gene3D G3DSA:3.40.50.1000 382 656 2.6E-91 T 13-10-2018 IPR023214 HAD superfamily AP3564_10610 2d19755e273170692a1b1c71ed22a046 712 PRINTS PR00941 Cadmium-transporting ATPase signature 185 205 2.1E-75 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AP3564_10610 2d19755e273170692a1b1c71ed22a046 712 PRINTS PR00941 Cadmium-transporting ATPase signature 49 72 2.1E-75 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AP3564_10610 2d19755e273170692a1b1c71ed22a046 712 PRINTS PR00941 Cadmium-transporting ATPase signature 266 282 2.1E-75 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AP3564_10610 2d19755e273170692a1b1c71ed22a046 712 PRINTS PR00941 Cadmium-transporting ATPase signature 285 299 2.1E-75 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AP3564_10610 2d19755e273170692a1b1c71ed22a046 712 PRINTS PR00941 Cadmium-transporting ATPase signature 131 143 2.1E-75 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AP3564_10610 2d19755e273170692a1b1c71ed22a046 712 PRINTS PR00941 Cadmium-transporting ATPase signature 114 131 2.1E-75 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AP3564_10610 2d19755e273170692a1b1c71ed22a046 712 PRINTS PR00941 Cadmium-transporting ATPase signature 16 25 2.1E-75 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AP3564_10610 2d19755e273170692a1b1c71ed22a046 712 PRINTS PR00941 Cadmium-transporting ATPase signature 205 221 2.1E-75 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AP3564_10610 2d19755e273170692a1b1c71ed22a046 712 PRINTS PR00941 Cadmium-transporting ATPase signature 27 48 2.1E-75 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AP3564_10610 2d19755e273170692a1b1c71ed22a046 712 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 150 707 1.2E-190 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AP3564_10610 2d19755e273170692a1b1c71ed22a046 712 Pfam PF00122 E1-E2 ATPase 202 381 1.5E-54 T 13-10-2018 AP3564_10610 2d19755e273170692a1b1c71ed22a046 712 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 551 561 1.1E-23 T 13-10-2018 AP3564_10610 2d19755e273170692a1b1c71ed22a046 712 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 604 623 1.1E-23 T 13-10-2018 AP3564_10610 2d19755e273170692a1b1c71ed22a046 712 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 250 264 1.1E-23 T 13-10-2018 AP3564_10610 2d19755e273170692a1b1c71ed22a046 712 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 628 640 1.1E-23 T 13-10-2018 AP3564_10610 2d19755e273170692a1b1c71ed22a046 712 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 401 415 1.1E-23 T 13-10-2018 AP3564_10610 2d19755e273170692a1b1c71ed22a046 712 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 528 539 1.1E-23 T 13-10-2018 AP3564_10610 2d19755e273170692a1b1c71ed22a046 712 Gene3D G3DSA:3.40.1110.10 412 535 2.6E-91 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AP3564_10610 2d19755e273170692a1b1c71ed22a046 712 Gene3D G3DSA:3.30.70.100 11 80 1.5E-17 T 13-10-2018 AP3564_01590 f4f4de60551ad1c503c772bb65c9c417 256 Pfam PF14167 YfkD-like protein 25 256 5.5E-118 T 13-10-2018 IPR025548 YfkD-like protein AP3564_03905 bee6d012ca71c1a2e0713b118cd50993 171 Pfam PF00430 ATP synthase B/B' CF(0) 19 148 1.4E-38 T 13-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 AP3564_03905 bee6d012ca71c1a2e0713b118cd50993 171 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 21 167 3.5E-45 T 13-10-2018 IPR005864 ATP synthase, F0 complex, subunit b, bacterial GO:0015078|GO:0015986|GO:0045263 AP3564_03905 bee6d012ca71c1a2e0713b118cd50993 171 SUPERFAMILY SSF81573 74 133 1.57E-11 T 13-10-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily AP3564_03905 bee6d012ca71c1a2e0713b118cd50993 171 Hamap MF_01398 ATP synthase subunit b [atpF]. 12 149 13.843 T 13-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 AP3564_09265 a61b1152de4e355b0511e20a2d14473f 127 Gene3D G3DSA:2.30.30.430 1 124 1.4E-53 T 13-10-2018 IPR038080 Kinase associated protein B superfamily AP3564_09265 a61b1152de4e355b0511e20a2d14473f 127 SUPERFAMILY SSF141251 3 124 3.01E-53 T 13-10-2018 IPR038080 Kinase associated protein B superfamily AP3564_09265 a61b1152de4e355b0511e20a2d14473f 127 SMART SM01298 13 125 7.0E-71 T 13-10-2018 IPR014916 Kinase associated protein B AP3564_09265 a61b1152de4e355b0511e20a2d14473f 127 Pfam PF08810 Kinase associated protein B 13 124 6.7E-50 T 13-10-2018 IPR014916 Kinase associated protein B AP3564_01900 bd6cbd063570f7787871f3e8d61c94ea 452 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 195 417 2.0E-53 T 13-10-2018 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 AP3564_01900 bd6cbd063570f7787871f3e8d61c94ea 452 Gene3D G3DSA:3.40.50.720 1 166 6.4E-58 T 13-10-2018 AP3564_01900 bd6cbd063570f7787871f3e8d61c94ea 452 SUPERFAMILY SSF51735 3 165 1.82E-54 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_01900 bd6cbd063570f7787871f3e8d61c94ea 452 SUPERFAMILY SSF56327 168 442 3.81E-96 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AP3564_01900 bd6cbd063570f7787871f3e8d61c94ea 452 Pfam PF02056 Family 4 glycosyl hydrolase 6 184 7.6E-67 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AP3564_01900 bd6cbd063570f7787871f3e8d61c94ea 452 ProSitePatterns PS01324 Glycosyl hydrolases family 4 signature. 138 169 - T 13-10-2018 IPR019802 Glycoside hydrolase, family 4, conserved site GO:0004553|GO:0005975 AP3564_01900 bd6cbd063570f7787871f3e8d61c94ea 452 Gene3D G3DSA:3.90.110.10 167 448 2.2E-108 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AP3564_01900 bd6cbd063570f7787871f3e8d61c94ea 452 PRINTS PR00732 Glycosyl hydrolase family 4 signature 95 108 8.7E-59 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AP3564_01900 bd6cbd063570f7787871f3e8d61c94ea 452 PRINTS PR00732 Glycosyl hydrolase family 4 signature 191 203 8.7E-59 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AP3564_01900 bd6cbd063570f7787871f3e8d61c94ea 452 PRINTS PR00732 Glycosyl hydrolase family 4 signature 5 20 8.7E-59 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AP3564_01900 bd6cbd063570f7787871f3e8d61c94ea 452 PRINTS PR00732 Glycosyl hydrolase family 4 signature 74 90 8.7E-59 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AP3564_01900 bd6cbd063570f7787871f3e8d61c94ea 452 PRINTS PR00732 Glycosyl hydrolase family 4 signature 138 155 8.7E-59 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AP3564_01900 bd6cbd063570f7787871f3e8d61c94ea 452 PRINTS PR00732 Glycosyl hydrolase family 4 signature 109 129 8.7E-59 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AP3564_01900 bd6cbd063570f7787871f3e8d61c94ea 452 PRINTS PR00732 Glycosyl hydrolase family 4 signature 164 175 8.7E-59 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AP3564_02835 437bea68bd1bfada5e72eaaf362cff3b 290 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 246 261 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AP3564_02835 437bea68bd1bfada5e72eaaf362cff3b 290 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 60 77 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AP3564_02835 437bea68bd1bfada5e72eaaf362cff3b 290 PIRSF PIRSF000097 132 288 7.0E-52 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AP3564_02835 437bea68bd1bfada5e72eaaf362cff3b 290 PIRSF PIRSF000097 18 137 5.6E-42 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AP3564_02835 437bea68bd1bfada5e72eaaf362cff3b 290 SUPERFAMILY SSF51430 23 285 4.45E-100 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AP3564_02835 437bea68bd1bfada5e72eaaf362cff3b 290 Gene3D G3DSA:3.20.20.100 18 290 8.4E-129 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AP3564_02835 437bea68bd1bfada5e72eaaf362cff3b 290 Pfam PF00248 Aldo/keto reductase family 43 278 8.1E-56 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain AP3564_02835 437bea68bd1bfada5e72eaaf362cff3b 290 PRINTS PR00069 Aldo-keto reductase signature 112 130 9.5E-51 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AP3564_02835 437bea68bd1bfada5e72eaaf362cff3b 290 PRINTS PR00069 Aldo-keto reductase signature 176 205 9.5E-51 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AP3564_02835 437bea68bd1bfada5e72eaaf362cff3b 290 PRINTS PR00069 Aldo-keto reductase signature 56 80 9.5E-51 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AP3564_02835 437bea68bd1bfada5e72eaaf362cff3b 290 PRINTS PR00069 Aldo-keto reductase signature 142 159 9.5E-51 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AP3564_02835 437bea68bd1bfada5e72eaaf362cff3b 290 PRINTS PR00069 Aldo-keto reductase signature 213 237 9.5E-51 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AP3564_02835 437bea68bd1bfada5e72eaaf362cff3b 290 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 142 159 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AP3564_16265 c7ae4cd86e6e05f2e17f7297d984090d 300 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 288 43.959 T 13-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AP3564_16265 c7ae4cd86e6e05f2e17f7297d984090d 300 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 236 249 - T 13-10-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site AP3564_16265 c7ae4cd86e6e05f2e17f7297d984090d 300 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 13-10-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site AP3564_16265 c7ae4cd86e6e05f2e17f7297d984090d 300 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 1.9E-40 T 13-10-2018 AP3564_16265 c7ae4cd86e6e05f2e17f7297d984090d 300 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 1.9E-40 T 13-10-2018 AP3564_16265 c7ae4cd86e6e05f2e17f7297d984090d 300 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 1.9E-40 T 13-10-2018 AP3564_16265 c7ae4cd86e6e05f2e17f7297d984090d 300 PRINTS PR01798 Succinyl-CoA synthase signature 240 257 1.9E-40 T 13-10-2018 AP3564_16265 c7ae4cd86e6e05f2e17f7297d984090d 300 SUPERFAMILY SSF52210 123 286 1.57E-54 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AP3564_16265 c7ae4cd86e6e05f2e17f7297d984090d 300 SUPERFAMILY SSF51735 1 122 8.28E-44 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_16265 c7ae4cd86e6e05f2e17f7297d984090d 300 SMART SM00881 4 100 7.5E-35 T 13-10-2018 IPR003781 CoA-binding GO:0048037 AP3564_16265 c7ae4cd86e6e05f2e17f7297d984090d 300 Pfam PF00549 CoA-ligase 151 265 9.2E-19 T 13-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AP3564_16265 c7ae4cd86e6e05f2e17f7297d984090d 300 Gene3D G3DSA:3.40.50.720 1 123 3.8E-53 T 13-10-2018 AP3564_16265 c7ae4cd86e6e05f2e17f7297d984090d 300 Gene3D G3DSA:3.40.50.261 124 289 4.8E-72 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AP3564_16265 c7ae4cd86e6e05f2e17f7297d984090d 300 PIRSF PIRSF001553 1 291 1.2E-135 T 13-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AP3564_16265 c7ae4cd86e6e05f2e17f7297d984090d 300 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 4 288 3.6E-149 T 13-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AP3564_16265 c7ae4cd86e6e05f2e17f7297d984090d 300 Pfam PF02629 CoA binding domain 6 99 7.8E-32 T 13-10-2018 IPR003781 CoA-binding GO:0048037 AP3564_15780 c3393ff77967d3c422d240841803d995 401 Pfam PF13167 GTP-binding GTPase N-terminal 12 96 2.8E-32 T 13-10-2018 IPR025121 GTPase HflX, N-terminal AP3564_15780 c3393ff77967d3c422d240841803d995 401 Pfam PF16360 GTP-binding GTPase Middle Region 99 177 5.4E-32 T 13-10-2018 IPR032305 GTP-binding protein, middle domain AP3564_15780 c3393ff77967d3c422d240841803d995 401 PIRSF PIRSF006809 1 396 2.1E-145 T 13-10-2018 IPR016496 GTPase HflX GO:0005525 AP3564_15780 c3393ff77967d3c422d240841803d995 401 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 252 270 1.1E-9 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AP3564_15780 c3393ff77967d3c422d240841803d995 401 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 185 205 1.1E-9 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AP3564_15780 c3393ff77967d3c422d240841803d995 401 Gene3D G3DSA:3.40.50.11060 5 123 2.0E-40 T 13-10-2018 AP3564_15780 c3393ff77967d3c422d240841803d995 401 SUPERFAMILY SSF52540 184 348 1.37E-38 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_15780 c3393ff77967d3c422d240841803d995 401 Hamap MF_00900 GTPase HflX [hflX]. 12 370 46.83 T 13-10-2018 IPR016496 GTPase HflX GO:0005525 AP3564_15780 c3393ff77967d3c422d240841803d995 401 Pfam PF01926 50S ribosome-binding GTPase 184 303 2.2E-19 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AP3564_15780 c3393ff77967d3c422d240841803d995 401 Gene3D G3DSA:3.40.50.300 183 348 2.5E-35 T 13-10-2018 AP3564_15780 c3393ff77967d3c422d240841803d995 401 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 7 341 1.8E-143 T 13-10-2018 IPR016496 GTPase HflX GO:0005525 AP3564_11200 69fc750cdb725732282ff969973d1e24 430 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 10 425 2.3E-148 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AP3564_11200 69fc750cdb725732282ff969973d1e24 430 Gene3D G3DSA:3.40.640.10 5 290 1.8E-104 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_11200 69fc750cdb725732282ff969973d1e24 430 PIRSF PIRSF001434 1 429 6.4E-130 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AP3564_11200 69fc750cdb725732282ff969973d1e24 430 Gene3D G3DSA:3.90.1150.10 294 430 1.4E-52 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_11200 69fc750cdb725732282ff969973d1e24 430 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 202 216 - T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AP3564_11200 69fc750cdb725732282ff969973d1e24 430 SUPERFAMILY SSF53383 8 426 1.99E-128 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_11200 69fc750cdb725732282ff969973d1e24 430 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 9 425 6.1E-210 T 13-10-2018 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 AP3564_05050 bbba1ea55a804ee67fc1080204496fd1 211 Hamap MF_00165 Thymidylate kinase [tmk]. 4 207 30.62 T 13-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 AP3564_05050 bbba1ea55a804ee67fc1080204496fd1 211 Pfam PF02223 Thymidylate kinase 8 195 2.0E-55 T 13-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 AP3564_05050 bbba1ea55a804ee67fc1080204496fd1 211 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 2 195 2.1E-62 T 13-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 AP3564_05050 bbba1ea55a804ee67fc1080204496fd1 211 SUPERFAMILY SSF52540 1 206 2.6E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_05050 bbba1ea55a804ee67fc1080204496fd1 211 Gene3D G3DSA:3.40.50.300 1 208 2.9E-68 T 13-10-2018 AP3564_05050 bbba1ea55a804ee67fc1080204496fd1 211 ProSitePatterns PS01331 Thymidylate kinase signature. 93 105 - T 13-10-2018 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 AP3564_16775 b1e1f460081d147a0a34d9154ebcbe2a 264 Pfam PF01734 Patatin-like phospholipase 10 165 6.1E-22 T 13-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 AP3564_16775 b1e1f460081d147a0a34d9154ebcbe2a 264 Gene3D G3DSA:3.40.1090.10 101 218 1.1E-23 T 13-10-2018 AP3564_16775 b1e1f460081d147a0a34d9154ebcbe2a 264 Gene3D G3DSA:3.40.1090.10 1 100 1.2E-26 T 13-10-2018 AP3564_16775 b1e1f460081d147a0a34d9154ebcbe2a 264 SUPERFAMILY SSF52151 4 260 3.14E-56 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase AP3564_17835 b9896012fadabb957f368bd0ad378d84 292 SUPERFAMILY SSF48576 5 271 2.7E-86 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily AP3564_17835 b9896012fadabb957f368bd0ad378d84 292 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 211 223 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site AP3564_17835 b9896012fadabb957f368bd0ad378d84 292 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 80 96 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site AP3564_17835 b9896012fadabb957f368bd0ad378d84 292 Gene3D G3DSA:1.10.600.10 1 292 1.4E-105 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily AP3564_17835 b9896012fadabb957f368bd0ad378d84 292 Pfam PF00348 Polyprenyl synthetase 29 265 4.3E-59 T 13-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 AP3564_17220 63c68a060feed4d374537347283822d0 92 Pfam PF00216 Bacterial DNA-binding protein 1 89 4.8E-39 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AP3564_17220 63c68a060feed4d374537347283822d0 92 SMART SM00411 1 90 1.2E-53 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AP3564_17220 63c68a060feed4d374537347283822d0 92 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 13-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 AP3564_17220 63c68a060feed4d374537347283822d0 92 Gene3D G3DSA:4.10.520.10 1 90 3.5E-42 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AP3564_17220 63c68a060feed4d374537347283822d0 92 SUPERFAMILY SSF47729 1 90 8.24E-37 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AP3564_17220 63c68a060feed4d374537347283822d0 92 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 1.8E-22 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AP3564_17220 63c68a060feed4d374537347283822d0 92 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 1.8E-22 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AP3564_17220 63c68a060feed4d374537347283822d0 92 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 1.8E-22 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AP3564_08050 7caf96cc050972acdc95e5fbbc44e849 541 SUPERFAMILY SSF58104 206 538 1.57E-47 T 13-10-2018 AP3564_08050 7caf96cc050972acdc95e5fbbc44e849 541 Gene3D G3DSA:1.10.287.950 215 539 2.0E-48 T 13-10-2018 AP3564_08050 7caf96cc050972acdc95e5fbbc44e849 541 SMART SM00283 264 532 1.2E-22 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AP3564_08050 7caf96cc050972acdc95e5fbbc44e849 541 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 311 467 4.6E-27 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AP3564_13705 8440d0c1ef53ce5b4b7a3b3325ddf449 362 Gene3D G3DSA:3.30.565.10 251 355 1.1E-15 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_13705 8440d0c1ef53ce5b4b7a3b3325ddf449 362 Gene3D G3DSA:3.30.450.40 2 180 2.3E-23 T 13-10-2018 IPR029016 GAF-like domain superfamily AP3564_13705 8440d0c1ef53ce5b4b7a3b3325ddf449 362 Pfam PF13185 GAF domain 26 167 1.3E-17 T 13-10-2018 IPR003018 GAF domain GO:0005515 AP3564_13705 8440d0c1ef53ce5b4b7a3b3325ddf449 362 SUPERFAMILY SSF55874 248 350 3.15E-9 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_13705 8440d0c1ef53ce5b4b7a3b3325ddf449 362 SMART SM00065 26 177 5.1E-9 T 13-10-2018 IPR003018 GAF domain GO:0005515 AP3564_13705 8440d0c1ef53ce5b4b7a3b3325ddf449 362 Pfam PF07730 Histidine kinase 184 248 9.2E-19 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AP3564_13705 8440d0c1ef53ce5b4b7a3b3325ddf449 362 SUPERFAMILY SSF55781 28 172 3.27E-21 T 13-10-2018 AP3564_04720 178dd1d363371917f69c02431666d207 271 Pfam PF09648 YycH protein 38 255 3.7E-59 T 13-10-2018 IPR018604 Regulatory protein YycH-like GO:0016021 AP3564_04720 178dd1d363371917f69c02431666d207 271 Gene3D G3DSA:3.30.310.160 70 190 1.2E-73 T 13-10-2018 AP3564_04720 178dd1d363371917f69c02431666d207 271 Gene3D G3DSA:3.10.450.660 48 260 1.2E-73 T 13-10-2018 AP3564_07160 5a407910ae48da9c5abe0e1624313535 332 Gene3D G3DSA:3.30.360.10 140 270 2.2E-109 T 13-10-2018 AP3564_07160 5a407910ae48da9c5abe0e1624313535 332 Gene3D G3DSA:3.40.50.720 3 319 2.2E-109 T 13-10-2018 AP3564_07160 5a407910ae48da9c5abe0e1624313535 332 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 136 229 9.2E-7 T 13-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 AP3564_07160 5a407910ae48da9c5abe0e1624313535 332 SUPERFAMILY SSF55347 126 293 6.54E-36 T 13-10-2018 AP3564_07160 5a407910ae48da9c5abe0e1624313535 332 SUPERFAMILY SSF51735 2 148 3.07E-50 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_07160 5a407910ae48da9c5abe0e1624313535 332 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 2 121 1.2E-31 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AP3564_07160 5a407910ae48da9c5abe0e1624313535 332 TIGRFAM TIGR04380 myo_inos_iolG: inositol 2-dehydrogenase 1 329 1.2E-141 T 13-10-2018 IPR030827 Inositol 2-dehydrogenase AP3564_18760 b5175d42b5577373f80bb81fc62154b2 89 Pfam PF02699 Preprotein translocase subunit 8 83 7.9E-32 T 13-10-2018 IPR003849 Preprotein translocase YajC AP3564_18760 b5175d42b5577373f80bb81fc62154b2 89 SMART SM01323 4 86 6.9E-46 T 13-10-2018 IPR003849 Preprotein translocase YajC AP3564_18760 b5175d42b5577373f80bb81fc62154b2 89 PRINTS PR01853 Bacterial YajC preprotein translocase signature 44 62 6.2E-16 T 13-10-2018 IPR003849 Preprotein translocase YajC AP3564_18760 b5175d42b5577373f80bb81fc62154b2 89 PRINTS PR01853 Bacterial YajC preprotein translocase signature 6 26 6.2E-16 T 13-10-2018 IPR003849 Preprotein translocase YajC AP3564_18760 b5175d42b5577373f80bb81fc62154b2 89 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 5 86 5.4E-33 T 13-10-2018 IPR003849 Preprotein translocase YajC AP3564_19215 42ae23164a133b367130b8bd6b70d077 803 SMART SM00874 410 478 4.6E-30 T 13-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 AP3564_19215 42ae23164a133b367130b8bd6b70d077 803 Pfam PF03483 B3/4 domain 221 392 2.6E-66 T 13-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 AP3564_19215 42ae23164a133b367130b8bd6b70d077 803 SUPERFAMILY SSF46955 411 482 8.06E-20 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily AP3564_19215 42ae23164a133b367130b8bd6b70d077 803 Pfam PF03484 tRNA synthetase B5 domain 413 478 2.0E-20 T 13-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 AP3564_19215 42ae23164a133b367130b8bd6b70d077 803 SUPERFAMILY SSF50249 37 198 1.59E-47 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_19215 42ae23164a133b367130b8bd6b70d077 803 SMART SM00896 709 802 4.5E-49 T 13-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 AP3564_19215 42ae23164a133b367130b8bd6b70d077 803 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 796 47.048 T 13-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 AP3564_19215 42ae23164a133b367130b8bd6b70d077 803 Pfam PF01588 Putative tRNA binding domain 45 151 2.6E-27 T 13-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 AP3564_19215 42ae23164a133b367130b8bd6b70d077 803 SUPERFAMILY SSF54991 704 802 4.32E-34 T 13-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 AP3564_19215 42ae23164a133b367130b8bd6b70d077 803 Gene3D G3DSA:3.30.56.10 4 188 1.2E-71 T 13-10-2018 AP3564_19215 42ae23164a133b367130b8bd6b70d077 803 Gene3D G3DSA:3.30.56.10 409 482 1.1E-25 T 13-10-2018 AP3564_19215 42ae23164a133b367130b8bd6b70d077 803 SUPERFAMILY SSF55681 474 696 5.47E-52 T 13-10-2018 AP3564_19215 42ae23164a133b367130b8bd6b70d077 803 Gene3D G3DSA:3.50.40.10 203 402 3.7E-82 T 13-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 AP3564_19215 42ae23164a133b367130b8bd6b70d077 803 SMART SM00873 220 393 4.4E-86 T 13-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 AP3564_19215 42ae23164a133b367130b8bd6b70d077 803 Gene3D G3DSA:2.40.50.140 39 160 1.2E-71 T 13-10-2018 AP3564_19215 42ae23164a133b367130b8bd6b70d077 803 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 802 3.3E-276 T 13-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 AP3564_19215 42ae23164a133b367130b8bd6b70d077 803 SUPERFAMILY SSF56037 208 399 1.46E-70 T 13-10-2018 AP3564_19215 42ae23164a133b367130b8bd6b70d077 803 Pfam PF03147 Ferredoxin-fold anticodon binding domain 709 802 4.9E-31 T 13-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 AP3564_19215 42ae23164a133b367130b8bd6b70d077 803 Gene3D G3DSA:3.30.930.10 494 698 1.3E-60 T 13-10-2018 AP3564_19215 42ae23164a133b367130b8bd6b70d077 803 Gene3D G3DSA:3.30.70.380 710 803 1.5E-32 T 13-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 AP3564_18460 20144c4c8ca4d6636ff5c4bd8c2f544e 376 Pfam PF00684 DnaJ central domain 146 210 1.8E-14 T 13-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 AP3564_18460 20144c4c8ca4d6636ff5c4bd8c2f544e 376 PRINTS PR00625 DnaJ domain signature 7 25 7.9E-32 T 13-10-2018 IPR001623 DnaJ domain AP3564_18460 20144c4c8ca4d6636ff5c4bd8c2f544e 376 PRINTS PR00625 DnaJ domain signature 25 40 7.9E-32 T 13-10-2018 IPR001623 DnaJ domain AP3564_18460 20144c4c8ca4d6636ff5c4bd8c2f544e 376 PRINTS PR00625 DnaJ domain signature 61 80 7.9E-32 T 13-10-2018 IPR001623 DnaJ domain AP3564_18460 20144c4c8ca4d6636ff5c4bd8c2f544e 376 PRINTS PR00625 DnaJ domain signature 41 61 7.9E-32 T 13-10-2018 IPR001623 DnaJ domain AP3564_18460 20144c4c8ca4d6636ff5c4bd8c2f544e 376 Gene3D G3DSA:2.10.230.10 146 210 8.2E-38 T 13-10-2018 AP3564_18460 20144c4c8ca4d6636ff5c4bd8c2f544e 376 Gene3D G3DSA:2.60.260.20 256 336 1.3E-30 T 13-10-2018 AP3564_18460 20144c4c8ca4d6636ff5c4bd8c2f544e 376 SUPERFAMILY SSF49493 262 347 6.54E-25 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AP3564_18460 20144c4c8ca4d6636ff5c4bd8c2f544e 376 Gene3D G3DSA:2.60.260.20 116 252 8.2E-38 T 13-10-2018 AP3564_18460 20144c4c8ca4d6636ff5c4bd8c2f544e 376 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 352 2.1E-144 T 13-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 AP3564_18460 20144c4c8ca4d6636ff5c4bd8c2f544e 376 ProSitePatterns PS00636 Nt-dnaJ domain signature. 46 65 - T 13-10-2018 IPR018253 DnaJ domain, conserved site AP3564_18460 20144c4c8ca4d6636ff5c4bd8c2f544e 376 SUPERFAMILY SSF46565 1 103 1.83E-37 T 13-10-2018 IPR036869 Chaperone J-domain superfamily AP3564_18460 20144c4c8ca4d6636ff5c4bd8c2f544e 376 SMART SM00271 4 61 9.5E-32 T 13-10-2018 IPR001623 DnaJ domain AP3564_18460 20144c4c8ca4d6636ff5c4bd8c2f544e 376 Gene3D G3DSA:1.10.287.110 1 112 6.2E-39 T 13-10-2018 IPR036869 Chaperone J-domain superfamily AP3564_18460 20144c4c8ca4d6636ff5c4bd8c2f544e 376 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 372 42.067 T 13-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 AP3564_18460 20144c4c8ca4d6636ff5c4bd8c2f544e 376 SUPERFAMILY SSF49493 113 260 8.63E-21 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AP3564_18460 20144c4c8ca4d6636ff5c4bd8c2f544e 376 Pfam PF01556 DnaJ C terminal domain 119 336 2.9E-45 T 13-10-2018 IPR002939 Chaperone DnaJ, C-terminal AP3564_18460 20144c4c8ca4d6636ff5c4bd8c2f544e 376 Pfam PF00226 DnaJ domain 5 66 7.7E-28 T 13-10-2018 IPR001623 DnaJ domain AP3564_18460 20144c4c8ca4d6636ff5c4bd8c2f544e 376 SUPERFAMILY SSF57938 133 214 9.16E-19 T 13-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily AP3564_16350 2e914cbc7fc39a16b792c2dff854758a 1188 SMART SM00968 518 637 2.0E-40 T 13-10-2018 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 AP3564_16350 2e914cbc7fc39a16b792c2dff854758a 1188 Pfam PF06470 SMC proteins Flexible Hinge Domain 518 637 3.2E-31 T 13-10-2018 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 AP3564_16350 2e914cbc7fc39a16b792c2dff854758a 1188 TIGRFAM TIGR02168 SMC_prok_B: chromosome segregation protein SMC 2 1178 0.0 T 13-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 AP3564_16350 2e914cbc7fc39a16b792c2dff854758a 1188 Gene3D G3DSA:3.30.70.1620 578 667 2.1E-65 T 13-10-2018 AP3564_16350 2e914cbc7fc39a16b792c2dff854758a 1188 PIRSF PIRSF005719 1 1185 0.0 T 13-10-2018 IPR024704 Structural maintenance of chromosomes protein AP3564_16350 2e914cbc7fc39a16b792c2dff854758a 1188 SUPERFAMILY SSF75553 483 685 3.53E-55 T 13-10-2018 IPR036277 SMCs flexible hinge superfamily GO:0005515|GO:0005524|GO:0005694|GO:0051276 AP3564_16350 2e914cbc7fc39a16b792c2dff854758a 1188 ProSitePatterns PS00018 EF-hand calcium-binding domain. 862 874 - T 13-10-2018 IPR018247 EF-Hand 1, calcium-binding site AP3564_16350 2e914cbc7fc39a16b792c2dff854758a 1188 Gene3D G3DSA:1.20.1060.20 495 679 2.1E-65 T 13-10-2018 AP3564_16350 2e914cbc7fc39a16b792c2dff854758a 1188 Gene3D G3DSA:3.40.50.300 1 243 1.8E-61 T 13-10-2018 AP3564_16350 2e914cbc7fc39a16b792c2dff854758a 1188 Gene3D G3DSA:3.40.50.300 994 1187 1.9E-55 T 13-10-2018 AP3564_16350 2e914cbc7fc39a16b792c2dff854758a 1188 Hamap MF_01894 Chromosome partition protein Smc [smc]. 1 1180 24.994 T 13-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 AP3564_16350 2e914cbc7fc39a16b792c2dff854758a 1188 SUPERFAMILY SSF52540 1 1163 1.18E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_16350 2e914cbc7fc39a16b792c2dff854758a 1188 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 1171 1.4E-66 T 13-10-2018 IPR003395 RecF/RecN/SMC, N-terminal AP3564_14325 8dfeeac691ff3920b85664f40dc0d321 69 Pfam PF03180 NLPA lipoprotein 12 68 8.5E-11 T 13-10-2018 IPR004872 Lipoprotein NlpA family AP3564_14325 8dfeeac691ff3920b85664f40dc0d321 69 SUPERFAMILY SSF53850 16 68 1.09E-8 T 13-10-2018 AP3564_14325 8dfeeac691ff3920b85664f40dc0d321 69 Gene3D G3DSA:3.40.190.10 5 68 2.7E-16 T 13-10-2018 AP3564_08860 6dc0f1d49911f0399b5bc38f90403904 333 SUPERFAMILY SSF81345 6 328 9.55E-81 T 13-10-2018 IPR037294 ABC transporter, BtuC-like AP3564_08860 6dc0f1d49911f0399b5bc38f90403904 333 Pfam PF01032 FecCD transport family 18 328 1.2E-94 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 AP3564_08860 6dc0f1d49911f0399b5bc38f90403904 333 Gene3D G3DSA:1.10.3470.10 5 332 4.0E-92 T 13-10-2018 IPR037294 ABC transporter, BtuC-like AP3564_05705 18ea241986ab5095ed9a59fc06203658 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 13-10-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05705 18ea241986ab5095ed9a59fc06203658 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 37.051 T 13-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 AP3564_05705 18ea241986ab5095ed9a59fc06203658 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 1.9E-72 T 13-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 AP3564_05705 18ea241986ab5095ed9a59fc06203658 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 3.2E-70 T 13-10-2018 IPR023798 Ribosomal protein S7 domain AP3564_05705 18ea241986ab5095ed9a59fc06203658 156 Gene3D G3DSA:1.10.455.10 2 156 7.9E-68 T 13-10-2018 IPR036823 Ribosomal protein S7 domain superfamily AP3564_05705 18ea241986ab5095ed9a59fc06203658 156 PIRSF PIRSF002122 5 156 8.0E-64 T 13-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 AP3564_05705 18ea241986ab5095ed9a59fc06203658 156 SUPERFAMILY SSF47973 1 149 1.7E-65 T 13-10-2018 IPR036823 Ribosomal protein S7 domain superfamily AP3564_15840 8554f71eeba5874a9ab26272f21a0ca7 264 Pfam PF13277 YmdB-like protein 4 254 2.7E-114 T 13-10-2018 IPR005235 Metallophosphoesterase, YmdB-like AP3564_15840 8554f71eeba5874a9ab26272f21a0ca7 264 SUPERFAMILY SSF56300 1 256 5.38E-90 T 13-10-2018 AP3564_15840 8554f71eeba5874a9ab26272f21a0ca7 264 Gene3D G3DSA:3.60.21.10 1 264 7.5E-121 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like AP3564_15840 8554f71eeba5874a9ab26272f21a0ca7 264 TIGRFAM TIGR00282 TIGR00282: metallophosphoesterase, MG_246/BB_0505 family 1 263 3.4E-114 T 13-10-2018 IPR005235 Metallophosphoesterase, YmdB-like AP3564_15840 8554f71eeba5874a9ab26272f21a0ca7 264 PIRSF PIRSF004789 1 262 2.5E-106 T 13-10-2018 IPR005235 Metallophosphoesterase, YmdB-like AP3564_04860 02ed8d2a5ded8728afb0d03f771dfda7 437 SUPERFAMILY SSF53098 207 402 1.59E-10 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_04860 02ed8d2a5ded8728afb0d03f771dfda7 437 Pfam PF13808 DDE_Tnp_1-associated 33 118 3.9E-12 T 13-10-2018 IPR032806 H repeat-associated protein, N-terminal AP3564_04860 02ed8d2a5ded8728afb0d03f771dfda7 437 Pfam PF13701 Transposase DDE domain group 1 38 411 4.2E-11 T 13-10-2018 IPR025668 Transposase DDE domain AP3564_17475 02ed8d2a5ded8728afb0d03f771dfda7 437 SUPERFAMILY SSF53098 207 402 1.59E-10 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_17475 02ed8d2a5ded8728afb0d03f771dfda7 437 Pfam PF13808 DDE_Tnp_1-associated 33 118 3.9E-12 T 13-10-2018 IPR032806 H repeat-associated protein, N-terminal AP3564_17475 02ed8d2a5ded8728afb0d03f771dfda7 437 Pfam PF13701 Transposase DDE domain group 1 38 411 4.2E-11 T 13-10-2018 IPR025668 Transposase DDE domain AP3564_01830 02ed8d2a5ded8728afb0d03f771dfda7 437 SUPERFAMILY SSF53098 207 402 1.59E-10 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_01830 02ed8d2a5ded8728afb0d03f771dfda7 437 Pfam PF13808 DDE_Tnp_1-associated 33 118 3.9E-12 T 13-10-2018 IPR032806 H repeat-associated protein, N-terminal AP3564_01830 02ed8d2a5ded8728afb0d03f771dfda7 437 Pfam PF13701 Transposase DDE domain group 1 38 411 4.2E-11 T 13-10-2018 IPR025668 Transposase DDE domain AP3564_11360 02ed8d2a5ded8728afb0d03f771dfda7 437 SUPERFAMILY SSF53098 207 402 1.59E-10 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_11360 02ed8d2a5ded8728afb0d03f771dfda7 437 Pfam PF13808 DDE_Tnp_1-associated 33 118 3.9E-12 T 13-10-2018 IPR032806 H repeat-associated protein, N-terminal AP3564_11360 02ed8d2a5ded8728afb0d03f771dfda7 437 Pfam PF13701 Transposase DDE domain group 1 38 411 4.2E-11 T 13-10-2018 IPR025668 Transposase DDE domain AP3564_11495 7ae96a304af1f3f07f477f95700655aa 139 SUPERFAMILY SSF46955 5 114 2.53E-26 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily AP3564_11495 7ae96a304af1f3f07f477f95700655aa 139 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 6 17 1.2E-6 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AP3564_11495 7ae96a304af1f3f07f477f95700655aa 139 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 17 30 1.2E-6 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AP3564_11495 7ae96a304af1f3f07f477f95700655aa 139 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 40 60 1.2E-6 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AP3564_11495 7ae96a304af1f3f07f477f95700655aa 139 Pfam PF13411 MerR HTH family regulatory protein 5 71 2.7E-17 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AP3564_11495 7ae96a304af1f3f07f477f95700655aa 139 Gene3D G3DSA:1.10.1660.10 5 133 2.2E-29 T 13-10-2018 AP3564_11495 7ae96a304af1f3f07f477f95700655aa 139 SMART SM00422 5 73 4.2E-23 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AP3564_17975 f7ac79bcac9fdeac49b84e122dce2226 466 Pfam PF03176 MMPL family 257 457 4.6E-26 T 13-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 AP3564_17975 f7ac79bcac9fdeac49b84e122dce2226 466 SUPERFAMILY SSF82866 8 73 4.58E-10 T 13-10-2018 AP3564_17975 f7ac79bcac9fdeac49b84e122dce2226 466 Gene3D G3DSA:1.20.1640.10 280 463 1.2E-12 T 13-10-2018 AP3564_17975 f7ac79bcac9fdeac49b84e122dce2226 466 SUPERFAMILY SSF82866 275 457 4.58E-34 T 13-10-2018 AP3564_02885 5cf33a0ced23e3c38f2747f90dbd6139 91 PIRSF PIRSF029962 1 91 7.5E-38 T 13-10-2018 IPR016941 Uncharacterised conserved protein UCP029962 AP3564_02885 5cf33a0ced23e3c38f2747f90dbd6139 91 Pfam PF06803 Protein of unknown function (DUF1232) 38 71 2.4E-10 T 13-10-2018 IPR010652 Domain of unknown function DUF1232 MetaCyc: PWY-7511 AP3564_17645 bf88657a8e908ca726c0b13adaff7659 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 4.7E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_17645 bf88657a8e908ca726c0b13adaff7659 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 4.7E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_17645 bf88657a8e908ca726c0b13adaff7659 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 4.7E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_17645 bf88657a8e908ca726c0b13adaff7659 264 SUPERFAMILY SSF51735 2 255 1.71E-72 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_17645 bf88657a8e908ca726c0b13adaff7659 264 Pfam PF00106 short chain dehydrogenase 9 195 2.8E-58 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_17645 bf88657a8e908ca726c0b13adaff7659 264 Gene3D G3DSA:3.40.50.720 1 263 4.2E-73 T 13-10-2018 AP3564_17645 bf88657a8e908ca726c0b13adaff7659 264 PIRSF PIRSF000126 1 262 9.1E-59 T 13-10-2018 AP3564_17645 bf88657a8e908ca726c0b13adaff7659 264 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AP3564_17645 bf88657a8e908ca726c0b13adaff7659 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 3.5E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_17645 bf88657a8e908ca726c0b13adaff7659 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 3.5E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_17645 bf88657a8e908ca726c0b13adaff7659 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 3.5E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_17645 bf88657a8e908ca726c0b13adaff7659 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 3.5E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_17645 bf88657a8e908ca726c0b13adaff7659 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 3.5E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_03095 6cb173800685b703cfcdc8c4a394207e 278 Gene3D G3DSA:3.10.50.40 134 224 1.3E-41 T 13-10-2018 AP3564_03095 6cb173800685b703cfcdc8c4a394207e 278 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 163 183 - T 13-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 AP3564_03095 6cb173800685b703cfcdc8c4a394207e 278 Gene3D G3DSA:1.10.3120.10 16 124 1.6E-7 T 13-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 AP3564_03095 6cb173800685b703cfcdc8c4a394207e 278 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 23 117 1.2E-9 T 13-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 AP3564_03095 6cb173800685b703cfcdc8c4a394207e 278 SUPERFAMILY SSF109998 26 164 3.73E-19 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily AP3564_03095 6cb173800685b703cfcdc8c4a394207e 278 Pfam PF13616 PPIC-type PPIASE domain 132 223 5.3E-29 T 13-10-2018 AP3564_03095 6cb173800685b703cfcdc8c4a394207e 278 SUPERFAMILY SSF54534 117 222 4.19E-36 T 13-10-2018 AP3564_03095 6cb173800685b703cfcdc8c4a394207e 278 Hamap MF_01145 Foldase protein PrsA [prsA]. 2 278 21.97 T 13-10-2018 IPR023059 Foldase protein PrsA GO:0003755 AP3564_04085 abf1863c2e141a99f6b785e00359de52 293 Pfam PF00491 Arginase family 23 285 2.5E-81 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 AP3564_04085 abf1863c2e141a99f6b785e00359de52 293 ProSitePatterns PS01053 Arginase family signature. 214 235 - T 13-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 AP3564_04085 abf1863c2e141a99f6b785e00359de52 293 Gene3D G3DSA:3.40.800.10 16 293 1.8E-97 T 13-10-2018 AP3564_04085 abf1863c2e141a99f6b785e00359de52 293 PIRSF PIRSF036979 1 292 3.7E-101 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 AP3564_04085 abf1863c2e141a99f6b785e00359de52 293 SUPERFAMILY SSF52768 12 290 8.1E-87 T 13-10-2018 IPR023696 Ureohydrolase domain superfamily AP3564_04085 abf1863c2e141a99f6b785e00359de52 293 TIGRFAM TIGR01230 agmatinase: agmatinase 11 286 7.9E-117 T 13-10-2018 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|Reactome: R-HSA-351143 AP3564_04245 64e5fd961b39e8454d072f5a6f775556 101 TIGRFAM TIGR02901 QoxD: cytochrome aa3 quinol oxidase, subunit IV 5 97 8.9E-37 T 13-10-2018 IPR014250 Quinol oxidase subunit IV GO:0016021|GO:0016682|GO:0042773 AP3564_04245 64e5fd961b39e8454d072f5a6f775556 101 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 14 86 9.8E-15 T 13-10-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 AP3564_08170 a3bd8d3fb976daee6e66976091f55442 366 Gene3D G3DSA:3.30.565.10 240 363 4.2E-19 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_08170 a3bd8d3fb976daee6e66976091f55442 366 Pfam PF07730 Histidine kinase 176 233 1.8E-13 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AP3564_08170 a3bd8d3fb976daee6e66976091f55442 366 SUPERFAMILY SSF55874 237 350 9.21E-7 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_13075 43871aecec6515887170331bda1393c3 480 Pfam PF01256 Carbohydrate kinase 235 473 7.3E-56 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 AP3564_13075 43871aecec6515887170331bda1393c3 480 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 210 477 19.969 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 AP3564_13075 43871aecec6515887170331bda1393c3 480 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 208 478 1.7E-69 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 AP3564_13075 43871aecec6515887170331bda1393c3 480 Pfam PF03853 YjeF-related protein N-terminus 25 179 4.2E-41 T 13-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AP3564_13075 43871aecec6515887170331bda1393c3 480 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 5 201 21.592 T 13-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AP3564_13075 43871aecec6515887170331bda1393c3 480 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 2 201 9.7E-45 T 13-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AP3564_13075 43871aecec6515887170331bda1393c3 480 PIRSF PIRSF017184 1 480 4.4E-109 T 13-10-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 AP3564_13075 43871aecec6515887170331bda1393c3 480 Gene3D G3DSA:3.40.1190.20 204 480 6.8E-80 T 13-10-2018 IPR029056 Ribokinase-like AP3564_13075 43871aecec6515887170331bda1393c3 480 SUPERFAMILY SSF53613 207 478 1.05E-66 T 13-10-2018 IPR029056 Ribokinase-like AP3564_13075 43871aecec6515887170331bda1393c3 480 SUPERFAMILY SSF64153 2 231 5.89E-52 T 13-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 AP3564_13075 43871aecec6515887170331bda1393c3 480 Gene3D G3DSA:3.40.50.10260 1 203 1.1E-53 T 13-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 AP3564_11105 6fb95928a9d4cd316bcc20bccb4a8b4d 524 Gene3D G3DSA:3.30.300.310 419 522 5.2E-26 T 13-10-2018 AP3564_11105 6fb95928a9d4cd316bcc20bccb4a8b4d 524 ProSitePatterns PS00455 Putative AMP-binding domain signature. 177 188 - T 13-10-2018 IPR020845 AMP-binding, conserved site AP3564_11105 6fb95928a9d4cd316bcc20bccb4a8b4d 524 Pfam PF00501 AMP-binding enzyme 12 423 1.3E-85 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AP3564_11105 6fb95928a9d4cd316bcc20bccb4a8b4d 524 Pfam PF13193 AMP-binding enzyme C-terminal domain 432 508 5.8E-15 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AP3564_11105 6fb95928a9d4cd316bcc20bccb4a8b4d 524 Gene3D G3DSA:3.40.50.12780 1 418 2.6E-100 T 13-10-2018 AP3564_11105 6fb95928a9d4cd316bcc20bccb4a8b4d 524 SUPERFAMILY SSF56801 6 521 2.62E-132 T 13-10-2018 AP3564_07875 d0a2ccb2313ce14c3a1f3bf84eddf0d7 470 Pfam PF00232 Glycosyl hydrolase family 1 7 466 1.3E-156 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AP3564_07875 d0a2ccb2313ce14c3a1f3bf84eddf0d7 470 PRINTS PR00131 Glycosyl hydrolase family 1 signature 365 373 2.1E-14 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AP3564_07875 d0a2ccb2313ce14c3a1f3bf84eddf0d7 470 PRINTS PR00131 Glycosyl hydrolase family 1 signature 407 424 2.1E-14 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AP3564_07875 d0a2ccb2313ce14c3a1f3bf84eddf0d7 470 PRINTS PR00131 Glycosyl hydrolase family 1 signature 386 397 2.1E-14 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AP3564_07875 d0a2ccb2313ce14c3a1f3bf84eddf0d7 470 PRINTS PR00131 Glycosyl hydrolase family 1 signature 288 302 2.1E-14 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AP3564_07875 d0a2ccb2313ce14c3a1f3bf84eddf0d7 470 PRINTS PR00131 Glycosyl hydrolase family 1 signature 431 443 2.1E-14 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AP3564_07875 d0a2ccb2313ce14c3a1f3bf84eddf0d7 470 Gene3D G3DSA:3.20.20.80 1 469 3.3E-165 T 13-10-2018 AP3564_07875 d0a2ccb2313ce14c3a1f3bf84eddf0d7 470 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 13 27 - T 13-10-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site AP3564_07875 d0a2ccb2313ce14c3a1f3bf84eddf0d7 470 SUPERFAMILY SSF51445 7 466 1.24E-169 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily AP3564_07875 d0a2ccb2313ce14c3a1f3bf84eddf0d7 470 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 365 373 - T 13-10-2018 IPR018120 Glycoside hydrolase family 1, active site AP3564_03740 7b04c247387e5e3df499024446adc266 293 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 4 263 2.2E-122 T 13-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 AP3564_03740 7b04c247387e5e3df499024446adc266 293 Pfam PF00483 Nucleotidyl transferase 6 259 9.2E-36 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AP3564_03740 7b04c247387e5e3df499024446adc266 293 Gene3D G3DSA:3.90.550.10 1 290 4.2E-98 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AP3564_03740 7b04c247387e5e3df499024446adc266 293 SUPERFAMILY SSF53448 3 267 3.96E-72 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AP3564_19075 7ce4eaf459db6499dec96c1b15d1dead 172 Gene3D G3DSA:3.30.70.1150 84 164 7.2E-29 T 13-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal AP3564_19075 7ce4eaf459db6499dec96c1b15d1dead 172 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 1 158 5.2E-65 T 13-10-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 AP3564_19075 7ce4eaf459db6499dec96c1b15d1dead 172 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 1 77 3.0E-26 T 13-10-2018 AP3564_19075 7ce4eaf459db6499dec96c1b15d1dead 172 Pfam PF10369 Small subunit of acetolactate synthase 85 158 3.0E-28 T 13-10-2018 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 AP3564_19075 7ce4eaf459db6499dec96c1b15d1dead 172 Pfam PF01842 ACT domain 5 68 2.0E-14 T 13-10-2018 IPR002912 ACT domain AP3564_19075 7ce4eaf459db6499dec96c1b15d1dead 172 SUPERFAMILY SSF55021 80 162 1.5E-26 T 13-10-2018 AP3564_19075 7ce4eaf459db6499dec96c1b15d1dead 172 Gene3D G3DSA:3.30.70.260 1 80 7.4E-30 T 13-10-2018 AP3564_19075 7ce4eaf459db6499dec96c1b15d1dead 172 SUPERFAMILY SSF55021 2 77 1.29E-18 T 13-10-2018 AP3564_07540 a11a7da7289d633b5533fd87c7a3684e 176 Pfam PF06338 ComK protein 5 152 1.1E-31 T 13-10-2018 IPR010461 Competence protein ComK GO:0030420 AP3564_06070 fb1ef79b226782f55c9d8a89ffb42b6f 600 Gene3D G3DSA:3.60.20.10 2 239 1.1E-72 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AP3564_06070 fb1ef79b226782f55c9d8a89ffb42b6f 600 Pfam PF13522 Glutamine amidotransferase domain 56 192 1.9E-21 T 13-10-2018 AP3564_06070 fb1ef79b226782f55c9d8a89ffb42b6f 600 Gene3D G3DSA:3.40.50.10490 445 600 1.8E-62 T 13-10-2018 AP3564_06070 fb1ef79b226782f55c9d8a89ffb42b6f 600 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 600 38.975 T 13-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 AP3564_06070 fb1ef79b226782f55c9d8a89ffb42b6f 600 Pfam PF01380 SIS domain 288 413 8.6E-36 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AP3564_06070 fb1ef79b226782f55c9d8a89ffb42b6f 600 Pfam PF01380 SIS domain 457 582 8.7E-18 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AP3564_06070 fb1ef79b226782f55c9d8a89ffb42b6f 600 SUPERFAMILY SSF56235 2 235 1.03E-65 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AP3564_06070 fb1ef79b226782f55c9d8a89ffb42b6f 600 SUPERFAMILY SSF53697 244 600 4.64E-97 T 13-10-2018 AP3564_06070 fb1ef79b226782f55c9d8a89ffb42b6f 600 Gene3D G3DSA:3.40.50.10490 243 443 4.8E-67 T 13-10-2018 AP3564_06070 fb1ef79b226782f55c9d8a89ffb42b6f 600 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 600 1.9E-232 T 13-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 AP3564_09310 afbd2443605ef8dc28c7bde6b605facd 449 Gene3D G3DSA:3.40.50.10490 227 417 2.5E-152 T 13-10-2018 AP3564_09310 afbd2443605ef8dc28c7bde6b605facd 449 Gene3D G3DSA:3.40.50.10490 58 226 2.5E-152 T 13-10-2018 AP3564_09310 afbd2443605ef8dc28c7bde6b605facd 449 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 408 425 - T 13-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_09310 afbd2443605ef8dc28c7bde6b605facd 449 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 202 215 - T 13-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_09310 afbd2443605ef8dc28c7bde6b605facd 449 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 1 435 27.064 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_09310 afbd2443605ef8dc28c7bde6b605facd 449 PRINTS PR00662 Glucose-6-phosphate isomerase signature 394 408 6.5E-29 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_09310 afbd2443605ef8dc28c7bde6b605facd 449 PRINTS PR00662 Glucose-6-phosphate isomerase signature 408 421 6.5E-29 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_09310 afbd2443605ef8dc28c7bde6b605facd 449 PRINTS PR00662 Glucose-6-phosphate isomerase signature 76 95 6.5E-29 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_09310 afbd2443605ef8dc28c7bde6b605facd 449 PRINTS PR00662 Glucose-6-phosphate isomerase signature 198 216 6.5E-29 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_09310 afbd2443605ef8dc28c7bde6b605facd 449 PRINTS PR00662 Glucose-6-phosphate isomerase signature 376 394 6.5E-29 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_09310 afbd2443605ef8dc28c7bde6b605facd 449 PRINTS PR00662 Glucose-6-phosphate isomerase signature 273 294 6.5E-29 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_09310 afbd2443605ef8dc28c7bde6b605facd 449 Gene3D G3DSA:3.40.50.10490 1 57 1.7E-15 T 13-10-2018 AP3564_09310 afbd2443605ef8dc28c7bde6b605facd 449 SUPERFAMILY SSF53697 5 447 1.85E-146 T 13-10-2018 AP3564_09310 afbd2443605ef8dc28c7bde6b605facd 449 Pfam PF00342 Phosphoglucose isomerase 76 425 7.7E-25 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_10400 4db28dc40a1e4989efdfe8bc73c3d02a 151 Gene3D G3DSA:3.30.530.20 1 150 1.3E-42 T 13-10-2018 IPR023393 START-like domain superfamily AP3564_10400 4db28dc40a1e4989efdfe8bc73c3d02a 151 Pfam PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) 5 144 5.3E-32 T 13-10-2018 IPR010419 Carbon monoxide dehydrogenase subunit G AP3564_10400 4db28dc40a1e4989efdfe8bc73c3d02a 151 SUPERFAMILY SSF55961 1 145 1.35E-40 T 13-10-2018 AP3564_00315 60eb5b30875e1c665741aef3e38bb730 498 Pfam PF13193 AMP-binding enzyme C-terminal domain 408 483 7.8E-22 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AP3564_00315 60eb5b30875e1c665741aef3e38bb730 498 Gene3D G3DSA:3.30.300.310 395 497 5.5E-35 T 13-10-2018 AP3564_00315 60eb5b30875e1c665741aef3e38bb730 498 ProSitePatterns PS00455 Putative AMP-binding domain signature. 154 165 - T 13-10-2018 IPR020845 AMP-binding, conserved site AP3564_00315 60eb5b30875e1c665741aef3e38bb730 498 TIGRFAM TIGR01923 menE: O-succinylbenzoate-CoA ligase 29 488 1.7E-99 T 13-10-2018 IPR010192 2-succinylbenzoate--CoA ligase GO:0005524|GO:0008756|GO:0009234 KEGG: 00130+6.2.1.26|MetaCyc: PWY-5837 AP3564_00315 60eb5b30875e1c665741aef3e38bb730 498 Gene3D G3DSA:3.40.50.12780 1 392 8.2E-119 T 13-10-2018 AP3564_00315 60eb5b30875e1c665741aef3e38bb730 498 Pfam PF00501 AMP-binding enzyme 9 399 2.6E-108 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AP3564_00315 60eb5b30875e1c665741aef3e38bb730 498 SUPERFAMILY SSF56801 6 493 7.85E-155 T 13-10-2018 AP3564_06810 f34515efdcd9bc7b6b208f573b71ab1b 371 SUPERFAMILY SSF53098 88 359 1.82E-34 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_06810 f34515efdcd9bc7b6b208f573b71ab1b 371 Pfam PF14294 Domain of unknown function (DUF4372) 8 76 2.7E-7 T 13-10-2018 IPR025399 Domain of unknown function DUF4372 AP3564_06810 f34515efdcd9bc7b6b208f573b71ab1b 371 Pfam PF01609 Transposase DDE domain 121 329 2.3E-29 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_17680 de6b4d977e706a8d7eb2dc491bd9a4f2 90 ProSitePatterns PS00151 Acylphosphatase signature 2. 32 48 - T 13-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AP3564_17680 de6b4d977e706a8d7eb2dc491bd9a4f2 90 SUPERFAMILY SSF54975 1 90 2.18E-29 T 13-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AP3564_17680 de6b4d977e706a8d7eb2dc491bd9a4f2 90 Pfam PF00708 Acylphosphatase 4 88 3.1E-29 T 13-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AP3564_17680 de6b4d977e706a8d7eb2dc491bd9a4f2 90 ProSitePatterns PS00150 Acylphosphatase signature 1. 8 18 - T 13-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AP3564_17680 de6b4d977e706a8d7eb2dc491bd9a4f2 90 Gene3D G3DSA:3.30.70.100 1 90 1.2E-35 T 13-10-2018 AP3564_11825 58f389eeeed3dc667fa33c69ed78321f 279 Gene3D G3DSA:2.30.24.10 1 68 2.6E-26 T 13-10-2018 IPR036650 CAT RNA-binding domain superfamily GO:0003723 AP3564_11825 58f389eeeed3dc667fa33c69ed78321f 279 Gene3D G3DSA:1.10.1790.10 70 168 7.1E-34 T 13-10-2018 AP3564_11825 58f389eeeed3dc667fa33c69ed78321f 279 Pfam PF00874 PRD domain 79 166 1.7E-27 T 13-10-2018 IPR011608 PRD domain GO:0006355 AP3564_11825 58f389eeeed3dc667fa33c69ed78321f 279 Pfam PF00874 PRD domain 184 274 1.3E-19 T 13-10-2018 IPR011608 PRD domain GO:0006355 AP3564_11825 58f389eeeed3dc667fa33c69ed78321f 279 SMART SM01061 4 62 2.4E-24 T 13-10-2018 IPR004341 CAT RNA-binding domain GO:0003723 AP3564_11825 58f389eeeed3dc667fa33c69ed78321f 279 SUPERFAMILY SSF63520 178 275 3.4E-23 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 AP3564_11825 58f389eeeed3dc667fa33c69ed78321f 279 Gene3D G3DSA:1.20.58.1950 225 277 4.5E-23 T 13-10-2018 AP3564_11825 58f389eeeed3dc667fa33c69ed78321f 279 Gene3D G3DSA:1.20.890.100 169 224 2.1E-20 T 13-10-2018 AP3564_11825 58f389eeeed3dc667fa33c69ed78321f 279 SUPERFAMILY SSF50151 4 57 3.53E-16 T 13-10-2018 IPR036650 CAT RNA-binding domain superfamily GO:0003723 AP3564_11825 58f389eeeed3dc667fa33c69ed78321f 279 ProSitePatterns PS00654 PRD domain signature. 101 113 - T 13-10-2018 IPR001550 Transcription antiterminator, conserved site GO:0003723|GO:0045893 AP3564_11825 58f389eeeed3dc667fa33c69ed78321f 279 Pfam PF03123 CAT RNA binding domain 5 60 6.9E-22 T 13-10-2018 IPR004341 CAT RNA-binding domain GO:0003723 AP3564_11825 58f389eeeed3dc667fa33c69ed78321f 279 SUPERFAMILY SSF63520 58 168 6.54E-32 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 AP3564_16455 500375d4226874d0df853fe78a57eabb 66 SMART SM01409 8 61 3.0E-14 T 13-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 AP3564_16455 500375d4226874d0df853fe78a57eabb 66 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 60 3.8E-24 T 13-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_16455 500375d4226874d0df853fe78a57eabb 66 Gene3D G3DSA:3.90.940.10 1 66 4.5E-19 T 13-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 AP3564_16455 500375d4226874d0df853fe78a57eabb 66 Pfam PF01192 RNA polymerase Rpb6 9 60 4.0E-14 T 13-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 AP3564_16455 500375d4226874d0df853fe78a57eabb 66 SUPERFAMILY SSF63562 1 65 1.46E-22 T 13-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 AP3564_16455 500375d4226874d0df853fe78a57eabb 66 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 62 14.648 T 13-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_04145 fe841d121dc0678eef7caa08e962efb5 255 Gene3D G3DSA:3.30.70.1030 7 144 2.0E-58 T 13-10-2018 AP3564_04145 fe841d121dc0678eef7caa08e962efb5 255 Hamap MF_01442 Putative heme-dependent peroxidase . 7 255 57.232 T 13-10-2018 IPR031332 Putative heme-dependent peroxidase, UPF0447 family AP3564_04145 fe841d121dc0678eef7caa08e962efb5 255 Gene3D G3DSA:3.30.70.1100 145 255 1.4E-48 T 13-10-2018 AP3564_04145 fe841d121dc0678eef7caa08e962efb5 255 Pfam PF06778 Chlorite dismutase 39 243 1.3E-78 T 13-10-2018 IPR010644 Putative heme-dependent peroxidase/Chlorite dismutase AP3564_04145 fe841d121dc0678eef7caa08e962efb5 255 SUPERFAMILY SSF54909 8 254 1.53E-97 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel AP3564_19170 d4d3f9614e3212d6f37b9809ee02e220 196 SUPERFAMILY SSF46689 4 80 9.22E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_19170 d4d3f9614e3212d6f37b9809ee02e220 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 56 3.1E-17 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_19170 d4d3f9614e3212d6f37b9809ee02e220 196 SUPERFAMILY SSF48498 78 192 2.17E-30 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AP3564_19170 d4d3f9614e3212d6f37b9809ee02e220 196 Gene3D G3DSA:1.10.10.60 1 49 2.1E-22 T 13-10-2018 AP3564_19170 d4d3f9614e3212d6f37b9809ee02e220 196 Gene3D G3DSA:1.10.357.10 50 196 2.1E-38 T 13-10-2018 AP3564_19170 d4d3f9614e3212d6f37b9809ee02e220 196 Pfam PF08359 YsiA-like protein, C-terminal region 58 190 3.3E-51 T 13-10-2018 IPR013570 Transcription regulator YsiA, C-terminal AP3564_19170 d4d3f9614e3212d6f37b9809ee02e220 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 1.5E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_19170 d4d3f9614e3212d6f37b9809ee02e220 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 1.5E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_13615 30ebc1341d06440f3ec37dec4afdd04d 268 SUPERFAMILY SSF56784 2 263 6.87E-61 T 13-10-2018 IPR036412 HAD-like superfamily AP3564_13615 30ebc1341d06440f3ec37dec4afdd04d 268 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 4 232 4.9E-24 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 AP3564_13615 30ebc1341d06440f3ec37dec4afdd04d 268 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 258 1.4E-59 T 13-10-2018 AP3564_13615 30ebc1341d06440f3ec37dec4afdd04d 268 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 4 258 2.8E-56 T 13-10-2018 IPR000150 Cof family GO:0016787 AP3564_13615 30ebc1341d06440f3ec37dec4afdd04d 268 ProSitePatterns PS01229 Hypothetical cof family signature 2. 213 235 - T 13-10-2018 AP3564_13615 30ebc1341d06440f3ec37dec4afdd04d 268 Gene3D G3DSA:3.40.50.1000 2 256 7.5E-63 T 13-10-2018 IPR023214 HAD superfamily AP3564_13615 30ebc1341d06440f3ec37dec4afdd04d 268 Gene3D G3DSA:3.30.1240.10 81 188 7.5E-63 T 13-10-2018 AP3564_10050 342db9cfcc320ace5e7bdcb3e7d8cbc9 354 PRINTS PR00096 Glutamine amidotransferase superfamily signature 233 244 1.2E-11 T 13-10-2018 AP3564_10050 342db9cfcc320ace5e7bdcb3e7d8cbc9 354 PRINTS PR00096 Glutamine amidotransferase superfamily signature 206 215 1.2E-11 T 13-10-2018 AP3564_10050 342db9cfcc320ace5e7bdcb3e7d8cbc9 354 PRINTS PR00096 Glutamine amidotransferase superfamily signature 319 332 1.2E-11 T 13-10-2018 AP3564_10050 342db9cfcc320ace5e7bdcb3e7d8cbc9 354 PRINTS PR00097 Anthranilate synthase component II signature 233 244 5.4E-7 T 13-10-2018 AP3564_10050 342db9cfcc320ace5e7bdcb3e7d8cbc9 354 PRINTS PR00097 Anthranilate synthase component II signature 206 215 5.4E-7 T 13-10-2018 AP3564_10050 342db9cfcc320ace5e7bdcb3e7d8cbc9 354 PRINTS PR00097 Anthranilate synthase component II signature 319 332 5.4E-7 T 13-10-2018 AP3564_10050 342db9cfcc320ace5e7bdcb3e7d8cbc9 354 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 1 348 43.388 T 13-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_10050 342db9cfcc320ace5e7bdcb3e7d8cbc9 354 SMART SM01097 1 131 2.3E-69 T 13-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_10050 342db9cfcc320ace5e7bdcb3e7d8cbc9 354 SUPERFAMILY SSF52317 154 344 8.02E-50 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AP3564_10050 342db9cfcc320ace5e7bdcb3e7d8cbc9 354 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 4 343 1.3E-136 T 13-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_10050 342db9cfcc320ace5e7bdcb3e7d8cbc9 354 Pfam PF00117 Glutamine amidotransferase class-I 167 342 7.9E-47 T 13-10-2018 IPR017926 Glutamine amidotransferase AP3564_10050 342db9cfcc320ace5e7bdcb3e7d8cbc9 354 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 3 130 3.2E-49 T 13-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_10050 342db9cfcc320ace5e7bdcb3e7d8cbc9 354 Gene3D G3DSA:3.50.30.20 1 146 4.4E-54 T 13-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_10050 342db9cfcc320ace5e7bdcb3e7d8cbc9 354 Gene3D G3DSA:3.40.50.880 164 342 1.4E-33 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AP3564_10050 342db9cfcc320ace5e7bdcb3e7d8cbc9 354 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 233 249 1.2E-31 T 13-10-2018 AP3564_10050 342db9cfcc320ace5e7bdcb3e7d8cbc9 354 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 165 179 1.2E-31 T 13-10-2018 AP3564_10050 342db9cfcc320ace5e7bdcb3e7d8cbc9 354 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 203 217 1.2E-31 T 13-10-2018 AP3564_10050 342db9cfcc320ace5e7bdcb3e7d8cbc9 354 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 275 286 1.2E-31 T 13-10-2018 AP3564_10050 342db9cfcc320ace5e7bdcb3e7d8cbc9 354 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 250 267 1.2E-31 T 13-10-2018 AP3564_10050 342db9cfcc320ace5e7bdcb3e7d8cbc9 354 SUPERFAMILY SSF52021 1 137 1.7E-51 T 13-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_05130 15aabcd8d329dc0268fbc8bd5b2af20a 62 ProSitePatterns PS00304 Small, acid-soluble spore proteins, alpha/beta type, signature 1. 13 22 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 AP3564_05130 15aabcd8d329dc0268fbc8bd5b2af20a 62 Pfam PF00269 Small, acid-soluble spore proteins, alpha/beta type 10 54 1.4E-7 T 13-10-2018 IPR001448 Small acid-soluble spore protein, alpha/beta-type GO:0003690|GO:0006265 AP3564_05130 15aabcd8d329dc0268fbc8bd5b2af20a 62 Gene3D G3DSA:1.10.8.910 7 61 5.4E-6 T 13-10-2018 IPR038300 SASP, alpha/beta-type superfamily AP3564_17525 d55a816074702e65bb685ddd040ebb38 117 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 2 106 2.7E-38 T 13-10-2018 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 AP3564_17525 d55a816074702e65bb685ddd040ebb38 117 SUPERFAMILY SSF52091 5 113 5.69E-32 T 13-10-2018 IPR036513 STAS domain superfamily AP3564_17525 d55a816074702e65bb685ddd040ebb38 117 Pfam PF01740 STAS domain 5 109 2.7E-25 T 13-10-2018 IPR002645 STAS domain AP3564_17525 d55a816074702e65bb685ddd040ebb38 117 Gene3D G3DSA:3.30.750.24 2 117 1.1E-33 T 13-10-2018 IPR036513 STAS domain superfamily AP3564_17525 d55a816074702e65bb685ddd040ebb38 117 TIGRFAM TIGR02886 spore_II_AA: anti-sigma F factor antagonist 5 110 9.7E-48 T 13-10-2018 IPR014237 Anti-sigma F factor antagonist GO:0006355|GO:0030435|GO:0045152 AP3564_08575 3d92a4b9e41608308ac6ad5653cf771e 205 Gene3D G3DSA:1.10.287.1080 112 205 1.0E-33 T 13-10-2018 AP3564_08575 3d92a4b9e41608308ac6ad5653cf771e 205 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 117 203 6.8E-17 T 13-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 AP3564_08575 3d92a4b9e41608308ac6ad5653cf771e 205 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 117 199 2.6E-32 T 13-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 AP3564_08575 3d92a4b9e41608308ac6ad5653cf771e 205 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 113 199 21.05 T 13-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 AP3564_08575 3d92a4b9e41608308ac6ad5653cf771e 205 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 29 100 3.1E-35 T 13-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 AP3564_08575 3d92a4b9e41608308ac6ad5653cf771e 205 SUPERFAMILY SSF101386 114 203 1.38E-26 T 13-10-2018 AP3564_08575 3d92a4b9e41608308ac6ad5653cf771e 205 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 51 100 2.0E-20 T 13-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 AP3564_08575 3d92a4b9e41608308ac6ad5653cf771e 205 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 2 105 29.928 T 13-10-2018 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 AP3564_08575 3d92a4b9e41608308ac6ad5653cf771e 205 Hamap MF_01019 Histidine biosynthesis bifunctional protein HisIE [hisI]. 4 204 37.979 T 13-10-2018 IPR023019 Histidine biosynthesis bifunctional protein HisIE GO:0000105|GO:0004635|GO:0004636 KEGG: 00340+3.6.1.31+3.5.4.19 AP3564_08575 3d92a4b9e41608308ac6ad5653cf771e 205 Gene3D G3DSA:3.10.20.400 1 92 2.0E-40 T 13-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 AP3564_08575 3d92a4b9e41608308ac6ad5653cf771e 205 SUPERFAMILY SSF141734 5 105 3.4E-47 T 13-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 AP3564_14835 c569c4acae255a14664b15616b1ee2ca 207 Pfam PF00717 Peptidase S24-like 124 190 5.5E-18 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AP3564_14835 c569c4acae255a14664b15616b1ee2ca 207 SUPERFAMILY SSF51306 83 204 6.98E-37 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily AP3564_14835 c569c4acae255a14664b15616b1ee2ca 207 SUPERFAMILY SSF46785 4 71 2.52E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_14835 c569c4acae255a14664b15616b1ee2ca 207 Hamap MF_00015 LexA repressor [lexA]. 4 206 35.381 T 13-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 AP3564_14835 c569c4acae255a14664b15616b1ee2ca 207 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 121 131 7.7E-11 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AP3564_14835 c569c4acae255a14664b15616b1ee2ca 207 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 161 173 7.7E-11 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AP3564_14835 c569c4acae255a14664b15616b1ee2ca 207 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 132 143 7.7E-11 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AP3564_14835 c569c4acae255a14664b15616b1ee2ca 207 Gene3D G3DSA:2.10.109.10 89 206 8.5E-44 T 13-10-2018 AP3564_14835 c569c4acae255a14664b15616b1ee2ca 207 TIGRFAM TIGR00498 lexA: repressor LexA 3 206 7.1E-79 T 13-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 AP3564_14835 c569c4acae255a14664b15616b1ee2ca 207 Pfam PF01726 LexA DNA binding domain 3 66 2.6E-28 T 13-10-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 AP3564_14835 c569c4acae255a14664b15616b1ee2ca 207 Gene3D G3DSA:1.10.10.10 3 69 3.9E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_01620 b78b665ff0034baa137c8dbaba3e090f 407 SUPERFAMILY SSF54966 2 115 1.27E-23 T 13-10-2018 IPR036422 RuBisCO large subunit, N-terminal domain superfamily GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 AP3564_01620 b78b665ff0034baa137c8dbaba3e090f 407 Gene3D G3DSA:3.20.20.110 116 404 8.0E-101 T 13-10-2018 IPR036376 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 AP3564_01620 b78b665ff0034baa137c8dbaba3e090f 407 Gene3D G3DSA:3.30.70.150 1 115 1.0E-26 T 13-10-2018 IPR036422 RuBisCO large subunit, N-terminal domain superfamily GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 AP3564_01620 b78b665ff0034baa137c8dbaba3e090f 407 Hamap MF_01679 2,3-diketo-5-methylthiopentyl-1-phosphate enolase [mtnW]. 2 400 57.024 T 13-10-2018 IPR017717 2,3-diketo-5-methylthiopentyl-1-phosphate enolase GO:0000287|GO:0019509|GO:0043715 KEGG: 00270+5.3.2.5|MetaCyc: PWY-4361 AP3564_01620 b78b665ff0034baa137c8dbaba3e090f 407 Pfam PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain 3 95 4.0E-4 T 13-10-2018 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 AP3564_01620 b78b665ff0034baa137c8dbaba3e090f 407 TIGRFAM TIGR03332 salvage_mtnW: 2,3-diketo-5-methylthiopentyl-1-phosphate enolase 4 400 4.4E-196 T 13-10-2018 IPR017717 2,3-diketo-5-methylthiopentyl-1-phosphate enolase GO:0000287|GO:0019509|GO:0043715 KEGG: 00270+5.3.2.5|MetaCyc: PWY-4361 AP3564_01620 b78b665ff0034baa137c8dbaba3e090f 407 Pfam PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain 121 399 2.0E-42 T 13-10-2018 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 AP3564_01620 b78b665ff0034baa137c8dbaba3e090f 407 SUPERFAMILY SSF51649 115 401 2.75E-83 T 13-10-2018 IPR036376 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 AP3564_12005 b059672d93844e71f49cd7305c91f886 151 Gene3D G3DSA:3.40.30.10 1 148 2.8E-40 T 13-10-2018 AP3564_12005 b059672d93844e71f49cd7305c91f886 151 Pfam PF00578 AhpC/TSA family 15 125 2.2E-13 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AP3564_12005 b059672d93844e71f49cd7305c91f886 151 SUPERFAMILY SSF52833 2 141 2.81E-34 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AP3564_19600 5686d2f740809776bfb45d62d2f2e72f 165 SUPERFAMILY SSF53098 35 156 2.28E-9 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_19600 5686d2f740809776bfb45d62d2f2e72f 165 Gene3D G3DSA:3.30.420.470 5 164 3.0E-16 T 13-10-2018 AP3564_19600 5686d2f740809776bfb45d62d2f2e72f 165 Pfam PF13358 DDE superfamily endonuclease 5 136 1.4E-36 T 13-10-2018 IPR038717 Tc1-like transposase, DDE domain AP3564_15715 82571d3fead8f951e32d446e78d0bf51 273 Pfam PF15534 Bacterial toxin 35 196 271 6.3E-30 T 13-10-2018 IPR029109 Bacterial toxin 35 AP3564_02030 d836b0770256872cc0e18ce0edf7ed71 146 SUPERFAMILY SSF46785 10 143 5.74E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_02030 d836b0770256872cc0e18ce0edf7ed71 146 Gene3D G3DSA:1.10.10.10 9 146 1.6E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_02030 d836b0770256872cc0e18ce0edf7ed71 146 SMART SM00347 26 126 1.9E-16 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_02030 d836b0770256872cc0e18ce0edf7ed71 146 PRINTS PR00598 Bacterial regulatory protein MarR family signature 67 82 9.1E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_02030 d836b0770256872cc0e18ce0edf7ed71 146 PRINTS PR00598 Bacterial regulatory protein MarR family signature 86 102 9.1E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_02030 d836b0770256872cc0e18ce0edf7ed71 146 PRINTS PR00598 Bacterial regulatory protein MarR family signature 50 66 9.1E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_02030 d836b0770256872cc0e18ce0edf7ed71 146 Pfam PF01047 MarR family 34 90 3.0E-14 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_15855 e7fa1110dc3a199435c732c1c99d2d4d 417 SUPERFAMILY SSF53218 2 206 2.36E-41 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily AP3564_15855 e7fa1110dc3a199435c732c1c99d2d4d 417 Gene3D G3DSA:3.40.980.10 1 169 1.2E-51 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily AP3564_15855 e7fa1110dc3a199435c732c1c99d2d4d 417 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 2 162 1.5E-33 T 13-10-2018 IPR001453 MoaB/Mog domain AP3564_15855 e7fa1110dc3a199435c732c1c99d2d4d 417 Pfam PF00994 Probable molybdopterin binding domain 4 169 9.9E-36 T 13-10-2018 IPR001453 MoaB/Mog domain AP3564_15855 e7fa1110dc3a199435c732c1c99d2d4d 417 Pfam PF02464 Competence-damaged protein 257 407 2.0E-52 T 13-10-2018 IPR008136 CinA, C-terminal AP3564_15855 e7fa1110dc3a199435c732c1c99d2d4d 417 SMART SM00852 4 171 2.5E-42 T 13-10-2018 IPR001453 MoaB/Mog domain AP3564_15855 e7fa1110dc3a199435c732c1c99d2d4d 417 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 264 406 4.2E-44 T 13-10-2018 IPR008136 CinA, C-terminal AP3564_15855 e7fa1110dc3a199435c732c1c99d2d4d 417 PIRSF PIRSF006728 1 416 2.1E-168 T 13-10-2018 IPR008135 Competence-induced protein CinA AP3564_15855 e7fa1110dc3a199435c732c1c99d2d4d 417 SUPERFAMILY SSF142433 250 411 5.23E-50 T 13-10-2018 IPR036653 CinA-like, C-terminal AP3564_15855 e7fa1110dc3a199435c732c1c99d2d4d 417 Gene3D G3DSA:3.90.950.20 246 410 2.2E-52 T 13-10-2018 IPR036653 CinA-like, C-terminal AP3564_15855 e7fa1110dc3a199435c732c1c99d2d4d 417 Hamap MF_00226_B Putative competence-damage inducible protein [cinA]. 1 417 168.291 T 13-10-2018 IPR008135 Competence-induced protein CinA AP3564_15855 e7fa1110dc3a199435c732c1c99d2d4d 417 TIGRFAM TIGR00200 cinA_nterm: competence/damage-inducible protein CinA N-terminal domain 2 410 4.2E-164 T 13-10-2018 IPR008135 Competence-induced protein CinA AP3564_06290 9dfa00a8aa0c8bd954fe5491da1f2f05 257 Gene3D G3DSA:3.30.450.40 79 256 4.4E-67 T 13-10-2018 IPR029016 GAF-like domain superfamily AP3564_06290 9dfa00a8aa0c8bd954fe5491da1f2f05 257 Gene3D G3DSA:1.10.10.10 5 78 1.4E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_06290 9dfa00a8aa0c8bd954fe5491da1f2f05 257 SUPERFAMILY SSF55781 65 253 2.81E-56 T 13-10-2018 AP3564_06290 9dfa00a8aa0c8bd954fe5491da1f2f05 257 Pfam PF01614 Bacterial transcriptional regulator 124 249 2.9E-41 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal AP3564_06290 9dfa00a8aa0c8bd954fe5491da1f2f05 257 Pfam PF09339 IclR helix-turn-helix domain 9 59 3.1E-15 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AP3564_06290 9dfa00a8aa0c8bd954fe5491da1f2f05 257 SUPERFAMILY SSF46785 7 80 3.4E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_06290 9dfa00a8aa0c8bd954fe5491da1f2f05 257 SMART SM00346 7 97 1.2E-27 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AP3564_01520 925d5b754c926129bfe3554c5b135340 76 Hamap MF_00829 UPF0435 protein . 6 73 20.849 T 13-10-2018 IPR009507 Protein of unknown function UPF0435 AP3564_01520 925d5b754c926129bfe3554c5b135340 76 Pfam PF06569 Protein of unknown function (DUF1128) 4 73 9.8E-33 T 13-10-2018 IPR009507 Protein of unknown function UPF0435 AP3564_03755 ba4322adedb28631adac121288dc8158 248 Pfam PF02706 Chain length determinant protein 3 94 6.7E-22 T 13-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 AP3564_03755 ba4322adedb28631adac121288dc8158 248 Pfam PF13807 G-rich domain on putative tyrosine kinase 142 194 1.3E-9 T 13-10-2018 IPR032807 Tyrosine kinase, G-rich domain AP3564_08210 5bd658f2dc2caac9be25c4dc58f75273 227 SUPERFAMILY SSF53335 9 197 8.36E-41 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_08210 5bd658f2dc2caac9be25c4dc58f75273 227 Pfam PF08241 Methyltransferase domain 53 143 1.8E-22 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AP3564_08210 5bd658f2dc2caac9be25c4dc58f75273 227 Gene3D G3DSA:3.40.50.150 26 227 1.9E-57 T 13-10-2018 AP3564_17215 56c9509fdef3de835444e6a0729870ab 188 Gene3D G3DSA:1.10.286.10 1 54 4.1E-23 T 13-10-2018 AP3564_17215 56c9509fdef3de835444e6a0729870ab 188 Gene3D G3DSA:3.30.1130.10 55 188 6.2E-61 T 13-10-2018 AP3564_17215 56c9509fdef3de835444e6a0729870ab 188 SUPERFAMILY SSF55620 3 187 1.48E-77 T 13-10-2018 AP3564_17215 56c9509fdef3de835444e6a0729870ab 188 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 9 188 2.9E-80 T 13-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AP3564_17215 56c9509fdef3de835444e6a0729870ab 188 Pfam PF01227 GTP cyclohydrolase I 9 186 2.4E-79 T 13-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AP3564_17215 56c9509fdef3de835444e6a0729870ab 188 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 65 81 - T 13-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AP3564_17215 56c9509fdef3de835444e6a0729870ab 188 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 5 187 41.858 T 13-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AP3564_18645 406a88792c8fb5589b00e337f81accfa 88 PIRSF PIRSF037258 1 88 2.4E-46 T 13-10-2018 IPR009309 Uncharacterised protein family UPF0297 AP3564_18645 406a88792c8fb5589b00e337f81accfa 88 Hamap MF_01507 UPF0297 protein . 1 85 28.932 T 13-10-2018 IPR009309 Uncharacterised protein family UPF0297 AP3564_18645 406a88792c8fb5589b00e337f81accfa 88 Pfam PF06135 Bacterial protein of unknown function (DUF965) 5 83 3.7E-38 T 13-10-2018 IPR009309 Uncharacterised protein family UPF0297 AP3564_06360 c8d5f02b74ebac534fcba2eb882048fc 482 SUPERFAMILY SSF53067 254 474 1.74E-24 T 13-10-2018 AP3564_06360 c8d5f02b74ebac534fcba2eb882048fc 482 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 260 435 1.8E-15 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AP3564_06360 c8d5f02b74ebac534fcba2eb882048fc 482 Gene3D G3DSA:3.30.420.40 2 240 1.8E-53 T 13-10-2018 AP3564_06360 c8d5f02b74ebac534fcba2eb882048fc 482 PIRSF PIRSF000538 5 480 3.7E-71 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AP3564_06360 c8d5f02b74ebac534fcba2eb882048fc 482 SUPERFAMILY SSF53067 8 251 7.77E-46 T 13-10-2018 AP3564_06360 c8d5f02b74ebac534fcba2eb882048fc 482 Gene3D G3DSA:3.30.420.40 242 479 2.1E-33 T 13-10-2018 AP3564_06360 c8d5f02b74ebac534fcba2eb882048fc 482 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 8 248 4.8E-42 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AP3564_10035 550dc5ff1e8d68962d7282987885aa4a 406 Pfam PF01960 ArgJ family 21 406 5.3E-155 T 13-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 AP3564_10035 550dc5ff1e8d68962d7282987885aa4a 406 ProDom PD004193 ACETYLTRANSFERASE ORNITHINE ARGININE BIOSYNTHESIS ARGJ GLUTAMATE N-ACETYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIFUNCTIONAL 33 406 1.0E-134 T 13-10-2018 AP3564_10035 550dc5ff1e8d68962d7282987885aa4a 406 Gene3D G3DSA:3.60.70.12 1 192 5.6E-70 T 13-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 AP3564_10035 550dc5ff1e8d68962d7282987885aa4a 406 SUPERFAMILY SSF56266 15 402 2.22E-143 T 13-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 AP3564_10035 550dc5ff1e8d68962d7282987885aa4a 406 Gene3D G3DSA:3.30.2330.10 193 277 4.4E-33 T 13-10-2018 AP3564_10035 550dc5ff1e8d68962d7282987885aa4a 406 Hamap MF_01106 Arginine biosynthesis bifunctional protein ArgJ [argJ]. 1 406 150.315 T 13-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 AP3564_10035 550dc5ff1e8d68962d7282987885aa4a 406 TIGRFAM TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 11 406 2.5E-165 T 13-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 AP3564_10035 550dc5ff1e8d68962d7282987885aa4a 406 Gene3D G3DSA:3.10.20.340 278 406 4.1E-51 T 13-10-2018 AP3564_01800 aa6f1a27caf4dacea4a045501585d78f 234 Pfam PF16887 Domain of unknown function (DUF5081) 6 230 1.6E-77 T 13-10-2018 IPR031682 Protein of unknown function DUF5081 AP3564_11040 28447355f347f3303d9c1f1ab2eca791 262 Gene3D G3DSA:3.40.140.10 116 262 1.7E-45 T 13-10-2018 AP3564_11040 28447355f347f3303d9c1f1ab2eca791 262 SUPERFAMILY SSF53927 6 260 9.02E-74 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 AP3564_11040 28447355f347f3303d9c1f1ab2eca791 262 Hamap MF_00187 Sulfur carrier protein FdhD [fdhD]. 3 261 30.229 T 13-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 AP3564_11040 28447355f347f3303d9c1f1ab2eca791 262 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 24 261 5.7E-72 T 13-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 AP3564_11040 28447355f347f3303d9c1f1ab2eca791 262 Gene3D G3DSA:3.10.20.10 29 111 9.3E-13 T 13-10-2018 AP3564_11040 28447355f347f3303d9c1f1ab2eca791 262 Pfam PF02634 FdhD/NarQ family 28 260 1.2E-73 T 13-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 AP3564_11040 28447355f347f3303d9c1f1ab2eca791 262 PIRSF PIRSF015626 1 262 2.9E-75 T 13-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 AP3564_10045 9dff5a6d97aeae2c28625d51b49630db 385 PIRSF PIRSF000521 7 114 4.3E-8 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AP3564_10045 9dff5a6d97aeae2c28625d51b49630db 385 PIRSF PIRSF000521 153 380 4.6E-41 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AP3564_10045 9dff5a6d97aeae2c28625d51b49630db 385 PIRSF PIRSF000521 107 155 6.0E-4 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AP3564_10045 9dff5a6d97aeae2c28625d51b49630db 385 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 3 377 9.5E-153 T 13-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 AP3564_10045 9dff5a6d97aeae2c28625d51b49630db 385 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 3 380 69.544 T 13-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 AP3564_10045 9dff5a6d97aeae2c28625d51b49630db 385 Pfam PF00202 Aminotransferase class-III 13 377 5.6E-123 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AP3564_10045 9dff5a6d97aeae2c28625d51b49630db 385 Gene3D G3DSA:3.90.1150.10 13 370 5.8E-144 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_10045 9dff5a6d97aeae2c28625d51b49630db 385 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 204 241 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AP3564_10045 9dff5a6d97aeae2c28625d51b49630db 385 Gene3D G3DSA:3.40.640.10 47 286 5.8E-144 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_10045 9dff5a6d97aeae2c28625d51b49630db 385 SUPERFAMILY SSF53383 2 378 2.92E-131 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_17545 bdeffe569d1dc3ca5a86a0b78d84f334 396 Pfam PF01676 Metalloenzyme superfamily 6 380 6.7E-46 T 13-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 AP3564_17545 bdeffe569d1dc3ca5a86a0b78d84f334 396 SUPERFAMILY SSF53649 4 392 1.67E-77 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 AP3564_17545 bdeffe569d1dc3ca5a86a0b78d84f334 396 PIRSF PIRSF001491 4 393 2.8E-169 T 13-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 AP3564_17545 bdeffe569d1dc3ca5a86a0b78d84f334 396 Hamap MF_00740 Phosphopentomutase [deoB]. 5 389 56.14 T 13-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 AP3564_17545 bdeffe569d1dc3ca5a86a0b78d84f334 396 SUPERFAMILY SSF143856 102 218 5.1E-53 T 13-10-2018 IPR024052 Phosphopentomutase DeoB cap domain superfamily GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 AP3564_17545 bdeffe569d1dc3ca5a86a0b78d84f334 396 Gene3D G3DSA:3.30.70.1250 100 218 2.7E-178 T 13-10-2018 IPR024052 Phosphopentomutase DeoB cap domain superfamily GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 AP3564_17545 bdeffe569d1dc3ca5a86a0b78d84f334 396 Gene3D G3DSA:3.40.720.10 6 389 2.7E-178 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 AP3564_17545 bdeffe569d1dc3ca5a86a0b78d84f334 396 TIGRFAM TIGR01696 deoB: phosphopentomutase 7 387 5.0E-204 T 13-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 AP3564_11910 b20df48e3877f0886e82f966f39abdd4 423 TIGRFAM TIGR00900 2A0121: H+ Antiporter protein 9 377 1.7E-96 T 13-10-2018 IPR004751 Drug antiporter protein GO:0015307|GO:0015893 AP3564_11910 b20df48e3877f0886e82f966f39abdd4 423 Pfam PF07690 Major Facilitator Superfamily 12 356 1.8E-25 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AP3564_11910 b20df48e3877f0886e82f966f39abdd4 423 Gene3D G3DSA:1.20.1250.20 1 191 1.2E-17 T 13-10-2018 AP3564_11910 b20df48e3877f0886e82f966f39abdd4 423 Gene3D G3DSA:1.20.1250.20 219 411 1.1E-12 T 13-10-2018 AP3564_11910 b20df48e3877f0886e82f966f39abdd4 423 SUPERFAMILY SSF103473 5 412 3.92E-37 T 13-10-2018 IPR036259 MFS transporter superfamily AP3564_02910 68e2b718d22ae38207a4991f6c3845af 120 TIGRFAM TIGR00494 crcB: protein CrcB 7 116 2.8E-23 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 AP3564_02910 68e2b718d22ae38207a4991f6c3845af 120 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 5 118 17.692 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 AP3564_02910 68e2b718d22ae38207a4991f6c3845af 120 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 7 113 1.1E-22 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 AP3564_03610 ee1f5405bb07e048e9f4a6499eb2a04b 351 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 52 330 3.9E-81 T 13-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 AP3564_03610 ee1f5405bb07e048e9f4a6499eb2a04b 351 PIRSF PIRSF006470 14 344 6.4E-87 T 13-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 AP3564_03610 ee1f5405bb07e048e9f4a6499eb2a04b 351 Gene3D G3DSA:3.40.190.170 41 349 1.2E-91 T 13-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily AP3564_03610 ee1f5405bb07e048e9f4a6499eb2a04b 351 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 52 304 4.3E-70 T 13-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 AP3564_15225 52f280a2f67ebf451360693715bee282 445 SUPERFAMILY SSF53098 43 404 3.03E-49 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_15225 52f280a2f67ebf451360693715bee282 445 Pfam PF13546 DDE superfamily endonuclease 65 248 1.2E-23 T 13-10-2018 IPR038721 Transposase IS701-like, DDE domain AP3564_03890 37251f27f9a6d87e989b26b2a439f848 285 Gene3D G3DSA:3.40.1380.10 61 203 9.6E-107 T 13-10-2018 AP3564_03890 37251f27f9a6d87e989b26b2a439f848 285 PRINTS PR00126 ATP synthase gamma subunit signature 166 183 1.2E-40 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03890 37251f27f9a6d87e989b26b2a439f848 285 PRINTS PR00126 ATP synthase gamma subunit signature 73 92 1.2E-40 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03890 37251f27f9a6d87e989b26b2a439f848 285 PRINTS PR00126 ATP synthase gamma subunit signature 231 250 1.2E-40 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03890 37251f27f9a6d87e989b26b2a439f848 285 PRINTS PR00126 ATP synthase gamma subunit signature 262 283 1.2E-40 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03890 37251f27f9a6d87e989b26b2a439f848 285 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 284 36.605 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03890 37251f27f9a6d87e989b26b2a439f848 285 Pfam PF00231 ATP synthase 3 284 1.3E-102 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03890 37251f27f9a6d87e989b26b2a439f848 285 SUPERFAMILY SSF52943 2 284 1.83E-95 T 13-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03890 37251f27f9a6d87e989b26b2a439f848 285 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 2 284 3.7E-114 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03890 37251f27f9a6d87e989b26b2a439f848 285 Gene3D G3DSA:1.10.287.80 6 280 9.6E-107 T 13-10-2018 AP3564_03890 37251f27f9a6d87e989b26b2a439f848 285 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 270 283 - T 13-10-2018 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_00325 f105c632c4fd1c67625d0d95e2fb3e68 447 Gene3D G3DSA:1.20.1250.20 27 235 7.7E-16 T 13-10-2018 AP3564_00325 f105c632c4fd1c67625d0d95e2fb3e68 447 Pfam PF11700 Vacuole effluxer Atg22 like 172 437 2.7E-33 T 13-10-2018 IPR024671 Autophagy-related protein 22-like AP3564_00325 f105c632c4fd1c67625d0d95e2fb3e68 447 SUPERFAMILY SSF103473 30 435 8.37E-43 T 13-10-2018 IPR036259 MFS transporter superfamily AP3564_00325 f105c632c4fd1c67625d0d95e2fb3e68 447 Gene3D G3DSA:1.20.1250.20 247 441 6.5E-19 T 13-10-2018 AP3564_14270 d889c4cc467d6b54cab2abaffa9c60a1 259 Gene3D G3DSA:1.10.12.10 201 259 2.6E-26 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal AP3564_14270 d889c4cc467d6b54cab2abaffa9c60a1 259 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 258 4.0E-74 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AP3564_14270 d889c4cc467d6b54cab2abaffa9c60a1 259 SUPERFAMILY SSF52096 2 258 1.32E-87 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AP3564_14270 d889c4cc467d6b54cab2abaffa9c60a1 259 Gene3D G3DSA:3.90.226.10 1 200 1.2E-74 T 13-10-2018 AP3564_12685 d625391b0e258c6511c6a23d35b883eb 421 Pfam PF07282 Putative transposase DNA-binding domain 318 393 1.1E-19 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal AP3564_12685 d625391b0e258c6511c6a23d35b883eb 421 TIGRFAM TIGR01766 tspaseT_teng_C: transposase, IS605 OrfB family 271 345 9.6E-19 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal AP3564_12685 d625391b0e258c6511c6a23d35b883eb 421 Pfam PF01385 Probable transposase 185 299 2.4E-17 T 13-10-2018 IPR001959 Probable transposase, IS891/IS1136/IS1341 AP3564_15865 c8e2a0e65944581a0f6b0fe04bf13898 295 Pfam PF13464 Domain of unknown function (DUF4115) 215 279 3.3E-13 T 13-10-2018 IPR025194 Domain of unknown function DUF4115 AP3564_15865 c8e2a0e65944581a0f6b0fe04bf13898 295 SUPERFAMILY SSF47413 3 75 3.94E-8 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AP3564_15865 c8e2a0e65944581a0f6b0fe04bf13898 295 Pfam PF13413 Helix-turn-helix domain 8 66 1.3E-19 T 13-10-2018 AP3564_15865 c8e2a0e65944581a0f6b0fe04bf13898 295 Gene3D G3DSA:1.10.260.40 1 102 9.2E-29 T 13-10-2018 AP3564_05875 8309bce1d40682412961681315f4ec2a 280 Gene3D G3DSA:3.40.50.300 2 278 2.7E-78 T 13-10-2018 AP3564_05875 8309bce1d40682412961681315f4ec2a 280 SMART SM00382 33 218 1.6E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_05875 8309bce1d40682412961681315f4ec2a 280 Pfam PF00005 ABC transporter 24 170 2.4E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_05875 8309bce1d40682412961681315f4ec2a 280 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_05875 8309bce1d40682412961681315f4ec2a 280 TIGRFAM TIGR04520 ECF_ATPase_1: energy-coupling factor transporter ATPase 6 274 9.3E-121 T 13-10-2018 IPR030947 Energy-coupling factor transporter ATP-binding protein EcfA1 AP3564_05875 8309bce1d40682412961681315f4ec2a 280 SUPERFAMILY SSF52540 5 230 9.78E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_19490 d88ba5a889c47b97fe939362de1c37f8 234 Pfam PF11167 Protein of unknown function (DUF2953) 129 182 2.5E-12 T 13-10-2018 IPR021338 Protein of unknown function DUF2953 AP3564_11015 a452264cabe0a28b459c5abd360a6f76 435 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 3 421 1.6E-124 T 13-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 AP3564_11015 a452264cabe0a28b459c5abd360a6f76 435 PIRSF PIRSF006446 1 435 3.3E-144 T 13-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 AP3564_13715 55a8f7146d20b671744df8091e37e695 149 Gene3D G3DSA:3.40.710.10 1 144 2.6E-34 T 13-10-2018 AP3564_13715 55a8f7146d20b671744df8091e37e695 149 SUPERFAMILY SSF56601 10 109 8.55E-29 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AP3564_13715 55a8f7146d20b671744df8091e37e695 149 Pfam PF00144 Beta-lactamase 20 102 2.7E-26 T 13-10-2018 IPR001466 Beta-lactamase-related AP3564_14705 b82c62eef1986580db88b17b5378b511 135 Gene3D G3DSA:3.40.50.720 1 135 3.6E-37 T 13-10-2018 AP3564_14705 b82c62eef1986580db88b17b5378b511 135 SMART SM00881 12 105 1.1E-13 T 13-10-2018 IPR003781 CoA-binding GO:0048037 AP3564_14705 b82c62eef1986580db88b17b5378b511 135 Pfam PF13380 CoA binding domain 17 131 7.4E-36 T 13-10-2018 IPR003781 CoA-binding GO:0048037 AP3564_14705 b82c62eef1986580db88b17b5378b511 135 SUPERFAMILY SSF51735 7 133 1.9E-39 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_17010 46305d43202cb127206caed2cc5055f6 282 Pfam PF02569 Pantoate-beta-alanine ligase 2 278 1.2E-102 T 13-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 AP3564_17010 46305d43202cb127206caed2cc5055f6 282 SUPERFAMILY SSF52374 1 280 3.22E-103 T 13-10-2018 AP3564_17010 46305d43202cb127206caed2cc5055f6 282 Gene3D G3DSA:3.40.50.620 1 177 3.2E-76 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AP3564_17010 46305d43202cb127206caed2cc5055f6 282 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 26 74 5.5E-9 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AP3564_17010 46305d43202cb127206caed2cc5055f6 282 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 1 280 2.4E-105 T 13-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 AP3564_17010 46305d43202cb127206caed2cc5055f6 282 Hamap MF_00158 Pantothenate synthetase [panC]. 2 279 38.572 T 13-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 AP3564_17010 46305d43202cb127206caed2cc5055f6 282 Gene3D G3DSA:3.30.1300.10 178 277 7.6E-32 T 13-10-2018 AP3564_16390 37b6c3258338eafa710b4e123847c050 555 TIGRFAM TIGR03599 YloV: DAK2 domain fusion protein YloV 11 555 3.5E-219 T 13-10-2018 IPR019986 DAK2 domain-containing protein YloV AP3564_16390 37b6c3258338eafa710b4e123847c050 555 Gene3D G3DSA:1.25.40.340 7 195 4.0E-14 T 13-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AP3564_16390 37b6c3258338eafa710b4e123847c050 555 SUPERFAMILY SSF101473 5 200 9.81E-48 T 13-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AP3564_16390 37b6c3258338eafa710b4e123847c050 555 Pfam PF13684 Dihydroxyacetone kinase family 239 555 5.2E-127 T 13-10-2018 IPR033470 Uncharacterised protein, DhaK domain AP3564_16390 37b6c3258338eafa710b4e123847c050 555 SUPERFAMILY SSF82549 368 541 8.11E-5 T 13-10-2018 AP3564_16390 37b6c3258338eafa710b4e123847c050 555 SMART SM01121 239 555 2.3E-188 T 13-10-2018 IPR033470 Uncharacterised protein, DhaK domain AP3564_16390 37b6c3258338eafa710b4e123847c050 555 SMART SM01120 36 201 1.7E-73 T 13-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AP3564_16390 37b6c3258338eafa710b4e123847c050 555 Pfam PF02734 DAK2 domain 36 200 1.2E-43 T 13-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AP3564_02060 719d6ac9289cb7ae20d6949b58639e38 344 Gene3D G3DSA:3.40.190.10 164 344 1.7E-29 T 13-10-2018 AP3564_02060 719d6ac9289cb7ae20d6949b58639e38 344 SUPERFAMILY SSF53850 44 271 2.27E-31 T 13-10-2018 AP3564_02060 719d6ac9289cb7ae20d6949b58639e38 344 Gene3D G3DSA:3.40.190.10 44 163 1.9E-7 T 13-10-2018 AP3564_02060 719d6ac9289cb7ae20d6949b58639e38 344 Pfam PF09084 NMT1/THI5 like 84 271 1.3E-26 T 13-10-2018 IPR015168 SsuA/THI5-like AP3564_13465 5817976926234e19de6e17c5455a1498 243 SMART SM00850 145 242 1.6E-35 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 AP3564_13465 5817976926234e19de6e17c5455a1498 243 SUPERFAMILY SSF52172 1 134 3.84E-27 T 13-10-2018 IPR011006 CheY-like superfamily AP3564_13465 5817976926234e19de6e17c5455a1498 243 SMART SM00448 2 114 6.5E-20 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_13465 5817976926234e19de6e17c5455a1498 243 Pfam PF00072 Response regulator receiver domain 5 114 1.6E-22 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_13465 5817976926234e19de6e17c5455a1498 243 Pfam PF04397 LytTr DNA-binding domain 145 241 1.3E-31 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 AP3564_13465 5817976926234e19de6e17c5455a1498 243 Gene3D G3DSA:2.40.50.40 136 205 6.7E-15 T 13-10-2018 AP3564_13465 5817976926234e19de6e17c5455a1498 243 Gene3D G3DSA:3.40.50.2300 1 135 1.4E-30 T 13-10-2018 AP3564_13465 5817976926234e19de6e17c5455a1498 243 Gene3D G3DSA:2.20.25.10 206 243 6.6E-8 T 13-10-2018 AP3564_05255 d9e6f7ccf4a78f3af0896c623f1bdb78 827 TIGRFAM TIGR02865 spore_II_E: stage II sporulation protein E 44 805 2.1E-276 T 13-10-2018 IPR014221 Sporulation stage II, protein E KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AP3564_05255 d9e6f7ccf4a78f3af0896c623f1bdb78 827 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 620 805 1.4E-35 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AP3564_05255 d9e6f7ccf4a78f3af0896c623f1bdb78 827 SMART SM00331 593 805 6.2E-44 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AP3564_05255 d9e6f7ccf4a78f3af0896c623f1bdb78 827 SMART SM00332 572 803 7.8E-5 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AP3564_05255 d9e6f7ccf4a78f3af0896c623f1bdb78 827 Gene3D G3DSA:3.60.40.10 587 827 3.9E-54 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AP3564_05255 d9e6f7ccf4a78f3af0896c623f1bdb78 827 SUPERFAMILY SSF81606 595 806 5.36E-21 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AP3564_16625 038e4055e86c8b40641161ae3a117658 258 Pfam PF04545 Sigma-70, region 4 207 253 1.5E-12 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 AP3564_16625 038e4055e86c8b40641161ae3a117658 258 TIGRFAM TIGR02850 spore_sigG: RNA polymerase sigma-G factor 4 257 1.9E-155 T 13-10-2018 IPR014212 RNA polymerase sigma-G type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AP3564_16625 038e4055e86c8b40641161ae3a117658 258 Gene3D G3DSA:1.20.140.160 113 258 9.0E-27 T 13-10-2018 AP3564_16625 038e4055e86c8b40641161ae3a117658 258 TIGRFAM TIGR02980 SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily 37 257 8.6E-83 T 13-10-2018 IPR014322 RNA polymerase sigma-B/F/G type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AP3564_16625 038e4055e86c8b40641161ae3a117658 258 Pfam PF04539 Sigma-70 region 3 124 173 4.3E-9 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 AP3564_16625 038e4055e86c8b40641161ae3a117658 258 Gene3D G3DSA:1.10.601.10 11 110 1.3E-27 T 13-10-2018 AP3564_16625 038e4055e86c8b40641161ae3a117658 258 SUPERFAMILY SSF88659 114 190 1.79E-17 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AP3564_16625 038e4055e86c8b40641161ae3a117658 258 PRINTS PR00046 Major sigma-70 factor signature 210 222 6.8E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_16625 038e4055e86c8b40641161ae3a117658 258 PRINTS PR00046 Major sigma-70 factor signature 242 253 6.8E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_16625 038e4055e86c8b40641161ae3a117658 258 PRINTS PR00046 Major sigma-70 factor signature 90 98 6.8E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_16625 038e4055e86c8b40641161ae3a117658 258 PRINTS PR00046 Major sigma-70 factor signature 227 242 6.8E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_16625 038e4055e86c8b40641161ae3a117658 258 PRINTS PR00046 Major sigma-70 factor signature 66 79 6.8E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_16625 038e4055e86c8b40641161ae3a117658 258 PIRSF PIRSF000770 14 258 4.4E-33 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_16625 038e4055e86c8b40641161ae3a117658 258 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 66 79 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_16625 038e4055e86c8b40641161ae3a117658 258 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 227 253 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_16625 038e4055e86c8b40641161ae3a117658 258 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 37 256 3.3E-35 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AP3564_16625 038e4055e86c8b40641161ae3a117658 258 SUPERFAMILY SSF88659 175 256 9.35E-15 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AP3564_16625 038e4055e86c8b40641161ae3a117658 258 SUPERFAMILY SSF88946 6 110 6.41E-34 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AP3564_16625 038e4055e86c8b40641161ae3a117658 258 Pfam PF04542 Sigma-70 region 2 42 110 4.0E-17 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AP3564_16745 00cd0e20ff7cab901fcab191c3ae8c7e 197 TIGRFAM TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family 4 177 6.7E-48 T 13-10-2018 IPR014243 Transcription factor, RsfA AP3564_16745 00cd0e20ff7cab901fcab191c3ae8c7e 197 Gene3D G3DSA:1.10.10.60 8 90 1.2E-7 T 13-10-2018 AP3564_16745 00cd0e20ff7cab901fcab191c3ae8c7e 197 SMART SM00717 5 59 2.6E-5 T 13-10-2018 IPR001005 SANT/Myb domain AP3564_16745 00cd0e20ff7cab901fcab191c3ae8c7e 197 SUPERFAMILY SSF46689 8 61 6.94E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_16745 00cd0e20ff7cab901fcab191c3ae8c7e 197 Pfam PF13921 Myb-like DNA-binding domain 9 63 3.9E-6 T 13-10-2018 AP3564_15710 e8d047e5aca0d950f5cdeda22ecfbfcb 425 Pfam PF01548 Transposase 19 179 3.1E-36 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_15710 e8d047e5aca0d950f5cdeda22ecfbfcb 425 Pfam PF02371 Transposase IS116/IS110/IS902 family 287 371 2.4E-23 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_02585 e8d047e5aca0d950f5cdeda22ecfbfcb 425 Pfam PF01548 Transposase 19 179 3.1E-36 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_02585 e8d047e5aca0d950f5cdeda22ecfbfcb 425 Pfam PF02371 Transposase IS116/IS110/IS902 family 287 371 2.4E-23 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_10275 e8d047e5aca0d950f5cdeda22ecfbfcb 425 Pfam PF01548 Transposase 19 179 3.1E-36 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_10275 e8d047e5aca0d950f5cdeda22ecfbfcb 425 Pfam PF02371 Transposase IS116/IS110/IS902 family 287 371 2.4E-23 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_10370 3365d3dad0b7cda646fd6cea41eed9be 361 SUPERFAMILY SSF56281 12 259 1.62E-49 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AP3564_10370 3365d3dad0b7cda646fd6cea41eed9be 361 SMART SM00849 23 218 1.7E-6 T 13-10-2018 IPR001279 Metallo-beta-lactamase AP3564_10370 3365d3dad0b7cda646fd6cea41eed9be 361 Pfam PF00753 Metallo-beta-lactamase superfamily 21 217 1.7E-15 T 13-10-2018 IPR001279 Metallo-beta-lactamase AP3564_10370 3365d3dad0b7cda646fd6cea41eed9be 361 Gene3D G3DSA:3.60.15.10 11 262 1.9E-73 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AP3564_08425 b7cdb5bb05a4f0624d06e87f44e8e6ec 102 Gene3D G3DSA:1.10.10.10 1 102 1.1E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_08425 b7cdb5bb05a4f0624d06e87f44e8e6ec 102 Pfam PF01022 Bacterial regulatory protein, arsR family 26 72 3.4E-18 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AP3564_08425 b7cdb5bb05a4f0624d06e87f44e8e6ec 102 SMART SM00418 19 97 1.7E-33 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AP3564_08425 b7cdb5bb05a4f0624d06e87f44e8e6ec 102 SUPERFAMILY SSF46785 9 99 3.07E-28 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_08425 b7cdb5bb05a4f0624d06e87f44e8e6ec 102 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 21 36 5.8E-16 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AP3564_08425 b7cdb5bb05a4f0624d06e87f44e8e6ec 102 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 53 68 5.8E-16 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AP3564_08425 b7cdb5bb05a4f0624d06e87f44e8e6ec 102 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 40 51 5.8E-16 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AP3564_08425 b7cdb5bb05a4f0624d06e87f44e8e6ec 102 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 68 83 5.8E-16 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AP3564_19295 596c27b24f355b9bb49b868727a3ee77 311 Gene3D G3DSA:3.40.50.300 108 303 4.8E-54 T 13-10-2018 AP3564_19295 596c27b24f355b9bb49b868727a3ee77 311 Pfam PF07319 Primosomal protein DnaI N-terminus 1 98 3.0E-28 T 13-10-2018 IPR009928 Primosomal DnaI, N-terminal AP3564_19295 596c27b24f355b9bb49b868727a3ee77 311 SUPERFAMILY SSF52540 125 288 1.44E-21 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_19295 596c27b24f355b9bb49b868727a3ee77 311 SMART SM00382 160 305 0.0024 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_19295 596c27b24f355b9bb49b868727a3ee77 311 Pfam PF01695 IstB-like ATP binding protein 129 274 1.2E-13 T 13-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 AP3564_03655 fad0cd5d24da48243075775893093f2a 337 Gene3D G3DSA:3.90.25.10 192 314 1.3E-131 T 13-10-2018 AP3564_03655 fad0cd5d24da48243075775893093f2a 337 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 3 320 3.5E-156 T 13-10-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 AP3564_03655 fad0cd5d24da48243075775893093f2a 337 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 305 1.4E-99 T 13-10-2018 IPR016040 NAD(P)-binding domain AP3564_03655 fad0cd5d24da48243075775893093f2a 337 SUPERFAMILY SSF51735 1 333 1.89E-104 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_03655 fad0cd5d24da48243075775893093f2a 337 Gene3D G3DSA:3.40.50.720 3 305 1.3E-131 T 13-10-2018 AP3564_11845 1abf16d7789620eb337f658ab89d178a 660 Gene3D G3DSA:1.10.287.950 359 659 8.5E-64 T 13-10-2018 AP3564_11845 1abf16d7789620eb337f658ab89d178a 660 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 452 585 1.9E-36 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AP3564_11845 1abf16d7789620eb337f658ab89d178a 660 Gene3D G3DSA:3.30.450.20 183 269 2.2E-30 T 13-10-2018 AP3564_11845 1abf16d7789620eb337f658ab89d178a 660 SUPERFAMILY SSF103190 130 192 1.73E-8 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily AP3564_11845 1abf16d7789620eb337f658ab89d178a 660 Gene3D G3DSA:1.20.1480.50 272 358 8.1E-17 T 13-10-2018 AP3564_11845 1abf16d7789620eb337f658ab89d178a 660 Gene3D G3DSA:3.30.450.20 83 182 2.2E-30 T 13-10-2018 AP3564_11845 1abf16d7789620eb337f658ab89d178a 660 Pfam PF02743 Cache domain 44 266 1.6E-39 T 13-10-2018 IPR033479 Double Cache domain 1 AP3564_11845 1abf16d7789620eb337f658ab89d178a 660 SMART SM00304 303 355 1.6E-11 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AP3564_11845 1abf16d7789620eb337f658ab89d178a 660 Pfam PF00672 HAMP domain 303 352 5.1E-10 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AP3564_11845 1abf16d7789620eb337f658ab89d178a 660 SMART SM00283 384 659 1.9E-62 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AP3564_11845 1abf16d7789620eb337f658ab89d178a 660 SUPERFAMILY SSF58104 323 659 1.14E-69 T 13-10-2018 AP3564_08935 9925a44f533ec74bc1b93a77fa767bd4 341 Gene3D G3DSA:3.40.50.300 1 246 3.2E-76 T 13-10-2018 AP3564_08935 9925a44f533ec74bc1b93a77fa767bd4 341 Gene3D G3DSA:3.30.70.260 247 341 3.0E-32 T 13-10-2018 AP3564_08935 9925a44f533ec74bc1b93a77fa767bd4 341 Pfam PF09383 NIL domain 265 337 2.8E-22 T 13-10-2018 IPR018449 NIL domain AP3564_08935 9925a44f533ec74bc1b93a77fa767bd4 341 SMART SM00382 30 218 2.0E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_08935 9925a44f533ec74bc1b93a77fa767bd4 341 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_08935 9925a44f533ec74bc1b93a77fa767bd4 341 SUPERFAMILY SSF52540 1 240 1.12E-83 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_08935 9925a44f533ec74bc1b93a77fa767bd4 341 Pfam PF00005 ABC transporter 22 169 5.1E-38 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_08935 9925a44f533ec74bc1b93a77fa767bd4 341 SMART SM00930 263 338 1.2E-30 T 13-10-2018 IPR018449 NIL domain AP3564_08935 9925a44f533ec74bc1b93a77fa767bd4 341 SUPERFAMILY SSF55021 249 340 5.61E-25 T 13-10-2018 AP3564_18115 242f28eb4c451af8b81f5d0202010b13 373 Gene3D G3DSA:3.40.630.10 81 370 2.9E-49 T 13-10-2018 AP3564_18115 242f28eb4c451af8b81f5d0202010b13 373 PRINTS PR00765 Carboxypeptidase A metalloprotease (M14) family signature 126 140 2.3E-5 T 13-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 AP3564_18115 242f28eb4c451af8b81f5d0202010b13 373 PRINTS PR00765 Carboxypeptidase A metalloprotease (M14) family signature 223 231 2.3E-5 T 13-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 AP3564_18115 242f28eb4c451af8b81f5d0202010b13 373 PRINTS PR00765 Carboxypeptidase A metalloprotease (M14) family signature 107 119 2.3E-5 T 13-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 AP3564_18115 242f28eb4c451af8b81f5d0202010b13 373 SUPERFAMILY SSF53187 77 367 3.97E-51 T 13-10-2018 AP3564_18115 242f28eb4c451af8b81f5d0202010b13 373 SMART SM00631 83 362 8.6E-23 T 13-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 AP3564_18115 242f28eb4c451af8b81f5d0202010b13 373 Pfam PF00246 Zinc carboxypeptidase 91 295 4.6E-29 T 13-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 AP3564_09620 13e81f442b50de6f6c770041348623ab 383 Gene3D G3DSA:3.40.50.2000 188 352 2.4E-32 T 13-10-2018 AP3564_09620 13e81f442b50de6f6c770041348623ab 383 Pfam PF00534 Glycosyl transferases group 1 201 346 3.4E-12 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 AP3564_09620 13e81f442b50de6f6c770041348623ab 383 SUPERFAMILY SSF53756 6 367 5.5E-35 T 13-10-2018 AP3564_09620 13e81f442b50de6f6c770041348623ab 383 Pfam PF06925 Monogalactosyldiacylglycerol (MGDG) synthase 18 179 7.4E-38 T 13-10-2018 IPR009695 Diacylglycerol glucosyltransferase, N-terminal GO:0009247|GO:0016758 AP3564_16910 a131464e05e94f727e3ead7a0e02756e 75 Pfam PF11122 Inner spore coat protein D 10 72 4.9E-21 T 13-10-2018 IPR020108 Spore coat protein CotD AP3564_16910 a131464e05e94f727e3ead7a0e02756e 75 ProDom PD057197 SPORE COAT CAPSID D INNER D COTD SPORULATION 3 64 6.0E-20 T 13-10-2018 IPR020108 Spore coat protein CotD AP3564_15550 1964fef4c84c455c3148ca56c74da89a 268 TIGRFAM TIGR02454 ECF_T_CbiQ: cobalt ECF transporter T component CbiQ 27 219 3.3E-39 T 13-10-2018 IPR012809 Cobalt ECF transporter T component CbiQ GO:0005887|GO:0006824|GO:0043190 AP3564_15550 1964fef4c84c455c3148ca56c74da89a 268 Pfam PF02361 Cobalt transport protein 21 223 3.7E-31 T 13-10-2018 IPR003339 ABC/ECF transporter, transmembrane component AP3564_17315 9b329cd5d26423d28c279dd4c3a384a7 324 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 7 291 9.6E-106 T 13-10-2018 AP3564_17315 9b329cd5d26423d28c279dd4c3a384a7 324 Gene3D G3DSA:3.50.50.60 132 250 1.8E-61 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_17315 9b329cd5d26423d28c279dd4c3a384a7 324 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 245 266 4.7E-19 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_17315 9b329cd5d26423d28c279dd4c3a384a7 324 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 5 27 4.7E-19 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_17315 9b329cd5d26423d28c279dd4c3a384a7 324 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 282 300 4.7E-19 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_17315 9b329cd5d26423d28c279dd4c3a384a7 324 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 120 128 4.7E-19 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_17315 9b329cd5d26423d28c279dd4c3a384a7 324 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 155 179 4.7E-19 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_17315 9b329cd5d26423d28c279dd4c3a384a7 324 Gene3D G3DSA:3.50.50.60 6 295 1.8E-61 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_17315 9b329cd5d26423d28c279dd4c3a384a7 324 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 159 177 1.2E-12 T 13-10-2018 AP3564_17315 9b329cd5d26423d28c279dd4c3a384a7 324 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 1.2E-12 T 13-10-2018 AP3564_17315 9b329cd5d26423d28c279dd4c3a384a7 324 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 243 259 1.2E-12 T 13-10-2018 AP3564_17315 9b329cd5d26423d28c279dd4c3a384a7 324 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 272 294 1.2E-12 T 13-10-2018 AP3564_17315 9b329cd5d26423d28c279dd4c3a384a7 324 SUPERFAMILY SSF51905 2 265 1.33E-45 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_17315 9b329cd5d26423d28c279dd4c3a384a7 324 TIGRFAM TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family 6 320 3.1E-146 T 13-10-2018 IPR023856 Bacillithiol biosynthesis thiol disulphide oxidoreductase, YpdA AP3564_07690 3d6ca601a15f374760db503d2dec7dd4 501 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 431 494 2.5E-12 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain AP3564_07690 3d6ca601a15f374760db503d2dec7dd4 501 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 8 494 1.6E-115 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 AP3564_07690 3d6ca601a15f374760db503d2dec7dd4 501 Pfam PF00460 Flagella basal body rod protein 8 37 6.5E-6 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AP3564_07690 3d6ca601a15f374760db503d2dec7dd4 501 SUPERFAMILY SSF64518 177 494 3.01E-20 T 13-10-2018 AP3564_16450 ffd92a25027ec10e89a11b1a6961ade7 403 Gene3D G3DSA:3.40.50.10300 189 403 4.8E-86 T 13-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 AP3564_16450 ffd92a25027ec10e89a11b1a6961ade7 403 Gene3D G3DSA:3.40.50.1950 2 188 4.5E-62 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 AP3564_16450 ffd92a25027ec10e89a11b1a6961ade7 403 Pfam PF02441 Flavoprotein 6 177 7.8E-49 T 13-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 AP3564_16450 ffd92a25027ec10e89a11b1a6961ade7 403 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 189 371 8.5E-73 T 13-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 AP3564_16450 ffd92a25027ec10e89a11b1a6961ade7 403 SUPERFAMILY SSF102645 188 401 3.66E-76 T 13-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 AP3564_16450 ffd92a25027ec10e89a11b1a6961ade7 403 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 5 396 1.2E-153 T 13-10-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 AP3564_16450 ffd92a25027ec10e89a11b1a6961ade7 403 SUPERFAMILY SSF52507 3 179 4.32E-62 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 AP3564_13215 7a6d0472f4a3372317b6c7a16f829a69 512 Pfam PF00474 Sodium:solute symporter family 33 434 2.9E-117 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 AP3564_13215 7a6d0472f4a3372317b6c7a16f829a69 512 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 416 436 - T 13-10-2018 IPR018212 Sodium/solute symporter, conserved site AP3564_13215 7a6d0472f4a3372317b6c7a16f829a69 512 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 148 173 - T 13-10-2018 IPR018212 Sodium/solute symporter, conserved site AP3564_13215 7a6d0472f4a3372317b6c7a16f829a69 512 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 33 434 1.2E-80 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 AP3564_13215 7a6d0472f4a3372317b6c7a16f829a69 512 Gene3D G3DSA:1.20.1730.10 6 502 8.3E-67 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily AP3564_16445 422399c76dd88cebcc45e51d7145a895 803 SUPERFAMILY SSF52540 531 706 1.67E-34 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_16445 422399c76dd88cebcc45e51d7145a895 803 Pfam PF00271 Helicase conserved C-terminal domain 576 660 3.5E-7 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_16445 422399c76dd88cebcc45e51d7145a895 803 SUPERFAMILY SSF52540 238 448 4.34E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_16445 422399c76dd88cebcc45e51d7145a895 803 Hamap MF_00983 Probable primosomal protein N' [priA]. 9 802 25.221 T 13-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 AP3564_16445 422399c76dd88cebcc45e51d7145a895 803 Gene3D G3DSA:1.10.8.630 3 113 5.3E-26 T 13-10-2018 AP3564_16445 422399c76dd88cebcc45e51d7145a895 803 TIGRFAM TIGR00595 priA: primosomal protein N' 290 800 1.1E-218 T 13-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 AP3564_16445 422399c76dd88cebcc45e51d7145a895 803 Gene3D G3DSA:3.40.50.300 253 446 5.1E-76 T 13-10-2018 AP3564_16445 422399c76dd88cebcc45e51d7145a895 803 SMART SM00487 262 461 2.6E-27 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AP3564_16445 422399c76dd88cebcc45e51d7145a895 803 SMART SM00490 564 661 1.3E-9 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_16445 422399c76dd88cebcc45e51d7145a895 803 Pfam PF04851 Type III restriction enzyme, res subunit 265 429 3.3E-17 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AP3564_11430 ef8493e6bf0e7bc07507d89ca4bad41e 481 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 337 462 3.4E-14 T 13-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 AP3564_11430 ef8493e6bf0e7bc07507d89ca4bad41e 481 SUPERFAMILY SSF110997 201 276 1.29E-14 T 13-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 AP3564_11430 ef8493e6bf0e7bc07507d89ca4bad41e 481 Pfam PF05036 Sporulation related domain 203 276 4.0E-14 T 13-10-2018 IPR007730 Sporulation-like domain GO:0042834 AP3564_11430 ef8493e6bf0e7bc07507d89ca4bad41e 481 SUPERFAMILY SSF53187 3 181 3.77E-48 T 13-10-2018 AP3564_11430 ef8493e6bf0e7bc07507d89ca4bad41e 481 Gene3D G3DSA:3.30.70.1070 203 277 5.8E-17 T 13-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 AP3564_11430 ef8493e6bf0e7bc07507d89ca4bad41e 481 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 4 176 4.5E-44 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 AP3564_11430 ef8493e6bf0e7bc07507d89ca4bad41e 481 SMART SM00646 63 176 5.8E-35 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 AP3564_11430 ef8493e6bf0e7bc07507d89ca4bad41e 481 Gene3D G3DSA:3.40.630.40 1 184 1.2E-50 T 13-10-2018 AP3564_17850 e4b575e28770a0784f10e3669ace5b13 284 SUPERFAMILY SSF51735 122 278 1.32E-54 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_17850 e4b575e28770a0784f10e3669ace5b13 284 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 282 40.55 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AP3564_17850 e4b575e28770a0784f10e3669ace5b13 284 Gene3D G3DSA:3.40.50.10860 8 276 4.6E-119 T 13-10-2018 AP3564_17850 e4b575e28770a0784f10e3669ace5b13 284 SUPERFAMILY SSF53223 1 121 4.41E-42 T 13-10-2018 AP3564_17850 e4b575e28770a0784f10e3669ace5b13 284 Gene3D G3DSA:3.40.50.720 6 258 4.6E-119 T 13-10-2018 AP3564_17850 e4b575e28770a0784f10e3669ace5b13 284 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 259 267 - T 13-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AP3564_17850 e4b575e28770a0784f10e3669ace5b13 284 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 123 281 9.0E-74 T 13-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AP3564_17850 e4b575e28770a0784f10e3669ace5b13 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 74 101 8.5E-87 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AP3564_17850 e4b575e28770a0784f10e3669ace5b13 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 33 55 8.5E-87 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AP3564_17850 e4b575e28770a0784f10e3669ace5b13 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 255 273 8.5E-87 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AP3564_17850 e4b575e28770a0784f10e3669ace5b13 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 154 174 8.5E-87 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AP3564_17850 e4b575e28770a0784f10e3669ace5b13 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 109 130 8.5E-87 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AP3564_17850 e4b575e28770a0784f10e3669ace5b13 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 203 232 8.5E-87 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AP3564_17850 e4b575e28770a0784f10e3669ace5b13 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 238 254 8.5E-87 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AP3564_17850 e4b575e28770a0784f10e3669ace5b13 284 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 75 100 - T 13-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AP3564_17850 e4b575e28770a0784f10e3669ace5b13 284 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 120 5.7E-43 T 13-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AP3564_05845 dc9938e42ca40c0837dbd81fcb4d1e07 72 SUPERFAMILY SSF50249 1 71 2.37E-29 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_05845 dc9938e42ca40c0837dbd81fcb4d1e07 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 2.5E-29 T 13-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 AP3564_05845 dc9938e42ca40c0837dbd81fcb4d1e07 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 71 3.9E-40 T 13-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 AP3564_05845 dc9938e42ca40c0837dbd81fcb4d1e07 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 28.522 T 13-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 AP3564_05845 dc9938e42ca40c0837dbd81fcb4d1e07 72 SMART SM00316 4 72 6.5E-7 T 13-10-2018 IPR022967 RNA-binding domain, S1 AP3564_05845 dc9938e42ca40c0837dbd81fcb4d1e07 72 Gene3D G3DSA:2.40.50.140 1 72 7.8E-39 T 13-10-2018 AP3564_11795 0873faa6b89fff5146da3f2c9b36f478 231 Gene3D G3DSA:2.40.50.90 26 169 7.4E-50 T 13-10-2018 IPR035437 SNase-like, OB-fold superfamily AP3564_11795 0873faa6b89fff5146da3f2c9b36f478 231 SUPERFAMILY SSF50199 28 168 3.79E-39 T 13-10-2018 AP3564_11795 0873faa6b89fff5146da3f2c9b36f478 231 ProSitePatterns PS01123 Thermonuclease family signature 1. 42 66 - T 13-10-2018 IPR002071 Thermonuclease active site GO:0003676|GO:0004518 Reactome: R-HSA-6802952 AP3564_11795 0873faa6b89fff5146da3f2c9b36f478 231 SMART SM00318 31 163 7.8E-41 T 13-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 AP3564_11795 0873faa6b89fff5146da3f2c9b36f478 231 Pfam PF00565 Staphylococcal nuclease homologue 56 162 1.9E-30 T 13-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 AP3564_10605 dc940012989fd6d81615318872824672 122 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 36 51 2.6E-22 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AP3564_10605 dc940012989fd6d81615318872824672 122 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 84 99 2.6E-22 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AP3564_10605 dc940012989fd6d81615318872824672 122 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 56 67 2.6E-22 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AP3564_10605 dc940012989fd6d81615318872824672 122 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 69 84 2.6E-22 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AP3564_10605 dc940012989fd6d81615318872824672 122 SMART SM00418 34 113 1.5E-32 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AP3564_10605 dc940012989fd6d81615318872824672 122 Pfam PF01022 Bacterial regulatory protein, arsR family 41 88 3.3E-18 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AP3564_10605 dc940012989fd6d81615318872824672 122 SUPERFAMILY SSF46785 20 108 4.64E-27 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_10605 dc940012989fd6d81615318872824672 122 ProSitePatterns PS00846 Bacterial regulatory proteins, arsR family signature. 58 76 - T 13-10-2018 IPR018334 ArsR-type transcription regulator, HTH motif GO:0003700|GO:0005622|GO:0006355 AP3564_10605 dc940012989fd6d81615318872824672 122 Gene3D G3DSA:1.10.10.10 1 122 1.3E-39 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_16960 9fd4fad192b2c5768c84949a4a2ab0ad 874 SUPERFAMILY SSF49265 685 767 1.05E-8 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 AP3564_16960 9fd4fad192b2c5768c84949a4a2ab0ad 874 Pfam PF00905 Penicillin binding protein transpeptidase domain 343 624 2.4E-44 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AP3564_16960 9fd4fad192b2c5768c84949a4a2ab0ad 874 Pfam PF00041 Fibronectin type III domain 687 759 1.7E-5 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 AP3564_16960 9fd4fad192b2c5768c84949a4a2ab0ad 874 SUPERFAMILY SSF53955 68 277 9.84E-75 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily AP3564_16960 9fd4fad192b2c5768c84949a4a2ab0ad 874 SMART SM00060 686 762 1.8E-4 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 AP3564_16960 9fd4fad192b2c5768c84949a4a2ab0ad 874 SUPERFAMILY SSF56601 234 685 7.97E-109 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AP3564_16960 9fd4fad192b2c5768c84949a4a2ab0ad 874 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 88 628 3.0E-185 T 13-10-2018 AP3564_16960 9fd4fad192b2c5768c84949a4a2ab0ad 874 Gene3D G3DSA:3.90.1310.20 73 524 2.1E-216 T 13-10-2018 AP3564_16960 9fd4fad192b2c5768c84949a4a2ab0ad 874 Gene3D G3DSA:3.40.710.10 316 639 2.1E-216 T 13-10-2018 AP3564_16960 9fd4fad192b2c5768c84949a4a2ab0ad 874 Gene3D G3DSA:1.10.3810.10 88 280 2.1E-216 T 13-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AP3564_16960 9fd4fad192b2c5768c84949a4a2ab0ad 874 Gene3D G3DSA:2.60.40.10 687 780 1.6E-10 T 13-10-2018 IPR013783 Immunoglobulin-like fold AP3564_16960 9fd4fad192b2c5768c84949a4a2ab0ad 874 Pfam PF00912 Transglycosylase 78 252 1.6E-63 T 13-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AP3564_18995 d77bf532b6de2b498f444bcec7554815 313 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 4 296 3.7E-107 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AP3564_18995 d77bf532b6de2b498f444bcec7554815 313 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 228 294 4.8E-17 T 13-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AP3564_18995 d77bf532b6de2b498f444bcec7554815 313 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 3 297 37.642 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AP3564_18995 d77bf532b6de2b498f444bcec7554815 313 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 4 213 4.7E-80 T 13-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AP3564_18995 d77bf532b6de2b498f444bcec7554815 313 Gene3D G3DSA:3.40.190.10 4 211 3.0E-84 T 13-10-2018 AP3564_18995 d77bf532b6de2b498f444bcec7554815 313 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 232 248 - T 13-10-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AP3564_18995 d77bf532b6de2b498f444bcec7554815 313 Gene3D G3DSA:3.40.190.10 101 203 3.0E-84 T 13-10-2018 AP3564_18995 d77bf532b6de2b498f444bcec7554815 313 SUPERFAMILY SSF53850 2 219 3.74E-80 T 13-10-2018 AP3564_18995 d77bf532b6de2b498f444bcec7554815 313 PRINTS PR00151 Porphobilinogen deaminase signature 141 158 3.8E-47 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AP3564_18995 d77bf532b6de2b498f444bcec7554815 313 PRINTS PR00151 Porphobilinogen deaminase signature 74 93 3.8E-47 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AP3564_18995 d77bf532b6de2b498f444bcec7554815 313 PRINTS PR00151 Porphobilinogen deaminase signature 43 63 3.8E-47 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AP3564_18995 d77bf532b6de2b498f444bcec7554815 313 PRINTS PR00151 Porphobilinogen deaminase signature 231 248 3.8E-47 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AP3564_18995 d77bf532b6de2b498f444bcec7554815 313 PRINTS PR00151 Porphobilinogen deaminase signature 122 139 3.8E-47 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AP3564_18995 d77bf532b6de2b498f444bcec7554815 313 SUPERFAMILY SSF54782 221 311 3.14E-20 T 13-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AP3564_18995 d77bf532b6de2b498f444bcec7554815 313 Gene3D G3DSA:3.30.160.40 222 306 4.8E-26 T 13-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AP3564_18995 d77bf532b6de2b498f444bcec7554815 313 PIRSF PIRSF001438 1 312 1.5E-121 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AP3564_08245 3033a2d8291deec1a0451fae981527d6 559 SUPERFAMILY SSF56112 97 432 2.05E-36 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily AP3564_08245 3033a2d8291deec1a0451fae981527d6 559 Gene3D G3DSA:1.10.510.10 250 316 1.2E-5 T 13-10-2018 AP3564_08245 3033a2d8291deec1a0451fae981527d6 559 Pfam PF03109 ABC1 family 115 233 1.2E-36 T 13-10-2018 IPR004147 UbiB domain AP3564_08245 3033a2d8291deec1a0451fae981527d6 559 Gene3D G3DSA:3.30.200.20 211 249 1.2E-5 T 13-10-2018 AP3564_06785 45dd0f394108f73f7913b65744cd7bba 120 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 2 117 4.9E-28 T 13-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 AP3564_06785 45dd0f394108f73f7913b65744cd7bba 120 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 4 107 1.5E-21 T 13-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AP3564_06785 45dd0f394108f73f7913b65744cd7bba 120 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 8 118 3.0E-28 T 13-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 AP3564_06785 45dd0f394108f73f7913b65744cd7bba 120 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 3 117 24.234 T 13-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 AP3564_06785 45dd0f394108f73f7913b65744cd7bba 120 SUPERFAMILY SSF56214 2 116 7.46E-32 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AP3564_06785 45dd0f394108f73f7913b65744cd7bba 120 Gene3D G3DSA:3.90.470.20 1 120 2.7E-34 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AP3564_06785 45dd0f394108f73f7913b65744cd7bba 120 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 2 120 1.1E-35 T 13-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 AP3564_18510 f4db4d9790a5687e5b38cd6314577e05 350 Gene3D G3DSA:1.10.8.60 148 215 5.6E-12 T 13-10-2018 AP3564_18510 f4db4d9790a5687e5b38cd6314577e05 350 SUPERFAMILY SSF48019 217 336 6.12E-27 T 13-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 AP3564_18510 f4db4d9790a5687e5b38cd6314577e05 350 Gene3D G3DSA:1.20.272.10 216 346 1.6E-39 T 13-10-2018 AP3564_18510 f4db4d9790a5687e5b38cd6314577e05 350 SUPERFAMILY SSF52540 4 214 1.7E-29 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_18510 f4db4d9790a5687e5b38cd6314577e05 350 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 15 336 5.4E-92 T 13-10-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 AP3564_18510 f4db4d9790a5687e5b38cd6314577e05 350 Pfam PF06144 DNA polymerase III, delta subunit 18 193 1.1E-52 T 13-10-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 AP3564_18510 f4db4d9790a5687e5b38cd6314577e05 350 Gene3D G3DSA:3.40.50.300 1 143 3.8E-45 T 13-10-2018 AP3564_12095 87ea3dfac06be105442921d251cca93b 202 PIRSF PIRSF005624 2 200 4.6E-47 T 13-10-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 AP3564_12095 87ea3dfac06be105442921d251cca93b 202 Gene3D G3DSA:3.40.50.300 3 200 4.4E-51 T 13-10-2018 AP3564_12095 87ea3dfac06be105442921d251cca93b 202 SUPERFAMILY SSF52540 3 195 5.01E-37 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_12095 87ea3dfac06be105442921d251cca93b 202 Hamap MF_01389 Urease accessory protein UreG [ureG]. 2 200 46.328 T 13-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 AP3564_12095 87ea3dfac06be105442921d251cca93b 202 TIGRFAM TIGR00101 ureG: urease accessory protein UreG 4 199 6.9E-103 T 13-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 AP3564_12095 87ea3dfac06be105442921d251cca93b 202 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 6 176 1.1E-37 T 13-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain AP3564_03930 5553cf61ee1fbc3b8ed80490165bf154 743 SUPERFAMILY SSF52743 121 530 1.1E-84 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 AP3564_03930 5553cf61ee1fbc3b8ed80490165bf154 743 Gene3D G3DSA:3.50.30.30 309 430 3.4E-32 T 13-10-2018 AP3564_03930 5553cf61ee1fbc3b8ed80490165bf154 743 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 137 148 - T 13-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site AP3564_03930 5553cf61ee1fbc3b8ed80490165bf154 743 SUPERFAMILY SSF52025 317 415 7.72E-20 T 13-10-2018 AP3564_03930 5553cf61ee1fbc3b8ed80490165bf154 743 Pfam PF00082 Subtilase family 132 521 4.2E-72 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AP3564_03930 5553cf61ee1fbc3b8ed80490165bf154 743 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 467 477 - T 13-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site AP3564_03930 5553cf61ee1fbc3b8ed80490165bf154 743 PRINTS PR00723 Subtilisin serine protease family (S8) signature 177 190 3.1E-20 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related AP3564_03930 5553cf61ee1fbc3b8ed80490165bf154 743 PRINTS PR00723 Subtilisin serine protease family (S8) signature 132 151 3.1E-20 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related AP3564_03930 5553cf61ee1fbc3b8ed80490165bf154 743 PRINTS PR00723 Subtilisin serine protease family (S8) signature 466 482 3.1E-20 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related AP3564_03930 5553cf61ee1fbc3b8ed80490165bf154 743 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 181 191 - T 13-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site AP3564_03930 5553cf61ee1fbc3b8ed80490165bf154 743 Pfam PF02225 PA domain 332 407 4.4E-16 T 13-10-2018 IPR003137 PA domain AP3564_17480 1a666f6fd22bf9a3601b0d894e4484b8 145 PIRSF PIRSF001467 5 145 1.1E-38 T 13-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 AP3564_17480 1a666f6fd22bf9a3601b0d894e4484b8 145 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 45 57 4.0E-25 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AP3564_17480 1a666f6fd22bf9a3601b0d894e4484b8 145 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 85 100 4.0E-25 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AP3564_17480 1a666f6fd22bf9a3601b0d894e4484b8 145 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 128 4.0E-25 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AP3564_17480 1a666f6fd22bf9a3601b0d894e4484b8 145 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 19 34 4.0E-25 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AP3564_17480 1a666f6fd22bf9a3601b0d894e4484b8 145 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 100 112 4.0E-25 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AP3564_17480 1a666f6fd22bf9a3601b0d894e4484b8 145 Gene3D G3DSA:2.40.100.10 1 145 2.1E-61 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily AP3564_17480 1a666f6fd22bf9a3601b0d894e4484b8 145 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 40 57 - T 13-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 AP3564_17480 1a666f6fd22bf9a3601b0d894e4484b8 145 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 10 138 4.8E-42 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AP3564_17480 1a666f6fd22bf9a3601b0d894e4484b8 145 SUPERFAMILY SSF50891 14 138 3.8E-47 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily AP3564_03230 21eba75608d31125a317a444fbe00599 884 Gene3D G3DSA:1.10.10.10 807 871 4.2E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_03230 21eba75608d31125a317a444fbe00599 884 Gene3D G3DSA:3.40.50.300 521 800 7.2E-116 T 13-10-2018 AP3564_03230 21eba75608d31125a317a444fbe00599 884 SUPERFAMILY SSF46785 812 876 6.35E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_03230 21eba75608d31125a317a444fbe00599 884 SUPERFAMILY SSF52540 497 787 5.71E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_03230 21eba75608d31125a317a444fbe00599 884 Pfam PF09397 Ftsk gamma domain 812 872 7.9E-30 T 13-10-2018 IPR018541 FtsK gamma domain AP3564_03230 21eba75608d31125a317a444fbe00599 884 SMART SM00382 559 736 0.001 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_03230 21eba75608d31125a317a444fbe00599 884 Pfam PF01580 FtsK/SpoIIIE family 524 664 4.6E-51 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 AP3564_03230 21eba75608d31125a317a444fbe00599 884 Gene3D G3DSA:3.30.980.40 417 520 9.3E-37 T 13-10-2018 AP3564_03230 21eba75608d31125a317a444fbe00599 884 SMART SM00843 810 875 5.4E-41 T 13-10-2018 IPR018541 FtsK gamma domain AP3564_17165 cc61ab469a881578c899b115998a0636 504 TIGRFAM TIGR00564 trpE_most: anthranilate synthase component I 27 489 1.0E-159 T 13-10-2018 IPR005256 Anthranilate synthase component I, PabB-like GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AP3564_17165 cc61ab469a881578c899b115998a0636 504 SUPERFAMILY SSF56322 15 493 4.97E-139 T 13-10-2018 IPR005801 ADC synthase GO:0009058 AP3564_17165 cc61ab469a881578c899b115998a0636 504 Pfam PF04715 Anthranilate synthase component I, N terminal region 27 165 1.5E-22 T 13-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AP3564_17165 cc61ab469a881578c899b115998a0636 504 Gene3D G3DSA:3.60.120.10 1 499 8.0E-156 T 13-10-2018 IPR005801 ADC synthase GO:0009058 AP3564_17165 cc61ab469a881578c899b115998a0636 504 PRINTS PR00095 Anthranilate synthase component I signature 438 452 1.9E-21 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AP3564_17165 cc61ab469a881578c899b115998a0636 504 PRINTS PR00095 Anthranilate synthase component I signature 329 342 1.9E-21 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AP3564_17165 cc61ab469a881578c899b115998a0636 504 PRINTS PR00095 Anthranilate synthase component I signature 343 356 1.9E-21 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AP3564_17165 cc61ab469a881578c899b115998a0636 504 PRINTS PR00095 Anthranilate synthase component I signature 423 437 1.9E-21 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AP3564_17165 cc61ab469a881578c899b115998a0636 504 Pfam PF00425 chorismate binding enzyme 228 481 4.3E-92 T 13-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal AP3564_16535 d6e0cc40389171a5182d8fba2700ed0c 258 Gene3D G3DSA:2.40.30.10 2 97 1.6E-28 T 13-10-2018 AP3564_16535 d6e0cc40389171a5182d8fba2700ed0c 258 SUPERFAMILY SSF63380 4 99 3.78E-21 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AP3564_16535 d6e0cc40389171a5182d8fba2700ed0c 258 Gene3D G3DSA:3.40.50.80 101 212 9.3E-25 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AP3564_16535 d6e0cc40389171a5182d8fba2700ed0c 258 Gene3D G3DSA:2.10.240.10 213 256 4.4E-18 T 13-10-2018 IPR037117 Dihydroorotate dehydrogenase, electron transfer subunit, Fe-S binding domain superfamily AP3564_16535 d6e0cc40389171a5182d8fba2700ed0c 258 Hamap MF_01211 Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit [pyrK]. 3 256 36.858 T 13-10-2018 IPR023455 Dihydroorotate dehydrogenase electron transfer subunit AP3564_16535 d6e0cc40389171a5182d8fba2700ed0c 258 SUPERFAMILY SSF52343 94 255 8.38E-29 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AP3564_16535 d6e0cc40389171a5182d8fba2700ed0c 258 PRINTS PR00409 Phthalate dioxygenase reductase family signature 109 128 6.5E-5 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 AP3564_16535 d6e0cc40389171a5182d8fba2700ed0c 258 PRINTS PR00409 Phthalate dioxygenase reductase family signature 186 194 6.5E-5 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 AP3564_16535 d6e0cc40389171a5182d8fba2700ed0c 258 Pfam PF00175 Oxidoreductase NAD-binding domain 110 200 1.8E-5 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AP3564_16535 d6e0cc40389171a5182d8fba2700ed0c 258 PIRSF PIRSF006816 1 258 4.6E-69 T 13-10-2018 IPR012165 Cytochrome-c3 hydrogenase, gamma subunit GO:0006221|GO:0050660|GO:0051537 AP3564_16535 d6e0cc40389171a5182d8fba2700ed0c 258 Pfam PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B 213 254 4.7E-16 T 13-10-2018 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain AP3564_04855 fadcd0c5d384c884a2933e675b456ee1 44 Pfam PF00468 Ribosomal protein L34 1 44 2.8E-24 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_04855 fadcd0c5d384c884a2933e675b456ee1 44 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 16.524 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_04855 fadcd0c5d384c884a2933e675b456ee1 44 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 13-10-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_04855 fadcd0c5d384c884a2933e675b456ee1 44 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 1.1E-21 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_04855 fadcd0c5d384c884a2933e675b456ee1 44 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 26 2.0E-7 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_08550 9c31de3779ec736db6231bbb2443965c 431 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 29 421 8.2E-174 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AP3564_08550 9c31de3779ec736db6231bbb2443965c 431 PRINTS PR00083 Histidinol dehydrogenase signature 29 53 1.8E-92 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AP3564_08550 9c31de3779ec736db6231bbb2443965c 431 PRINTS PR00083 Histidinol dehydrogenase signature 195 220 1.8E-92 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AP3564_08550 9c31de3779ec736db6231bbb2443965c 431 PRINTS PR00083 Histidinol dehydrogenase signature 246 265 1.8E-92 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AP3564_08550 9c31de3779ec736db6231bbb2443965c 431 PRINTS PR00083 Histidinol dehydrogenase signature 315 340 1.8E-92 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AP3564_08550 9c31de3779ec736db6231bbb2443965c 431 PRINTS PR00083 Histidinol dehydrogenase signature 356 374 1.8E-92 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AP3564_08550 9c31de3779ec736db6231bbb2443965c 431 PRINTS PR00083 Histidinol dehydrogenase signature 165 191 1.8E-92 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AP3564_08550 9c31de3779ec736db6231bbb2443965c 431 PRINTS PR00083 Histidinol dehydrogenase signature 130 156 1.8E-92 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AP3564_08550 9c31de3779ec736db6231bbb2443965c 431 PRINTS PR00083 Histidinol dehydrogenase signature 224 245 1.8E-92 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AP3564_08550 9c31de3779ec736db6231bbb2443965c 431 SUPERFAMILY SSF53720 22 422 8.63E-89 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AP3564_08550 9c31de3779ec736db6231bbb2443965c 431 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 4 422 43.737 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AP3564_08550 9c31de3779ec736db6231bbb2443965c 431 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 224 256 - T 13-10-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 AP3564_08550 9c31de3779ec736db6231bbb2443965c 431 Gene3D G3DSA:3.40.50.1980 228 344 3.3E-130 T 13-10-2018 AP3564_08550 9c31de3779ec736db6231bbb2443965c 431 Pfam PF00815 Histidinol dehydrogenase 22 422 1.6E-176 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AP3564_08550 9c31de3779ec736db6231bbb2443965c 431 Gene3D G3DSA:3.40.50.1980 27 226 3.3E-130 T 13-10-2018 AP3564_08550 9c31de3779ec736db6231bbb2443965c 431 PIRSF PIRSF000099 2 425 2.9E-178 T 13-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AP3564_02375 8b2eb8743c2c77f7b3718a87497d06f4 906 SMART SM00028 112 145 1.3 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AP3564_02375 8b2eb8743c2c77f7b3718a87497d06f4 906 SMART SM00028 77 109 54.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AP3564_02375 8b2eb8743c2c77f7b3718a87497d06f4 906 SUPERFAMILY SSF48452 42 166 8.54E-13 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AP3564_02375 8b2eb8743c2c77f7b3718a87497d06f4 906 Gene3D G3DSA:1.25.40.10 9 232 2.0E-13 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AP3564_15530 cdab0e2eb8f8670230d7528b9fd3ea59 449 Pfam PF02447 GntP family permease 2 447 7.1E-170 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AP3564_15530 cdab0e2eb8f8670230d7528b9fd3ea59 449 PIRSF PIRSF002746 1 449 4.5E-160 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AP3564_15530 cdab0e2eb8f8670230d7528b9fd3ea59 449 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 3 448 3.5E-158 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AP3564_11875 b2ec5cfe40cc2875dd83b4d3e8c5d11d 384 Gene3D G3DSA:3.90.1150.10 29 375 3.3E-128 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_11875 b2ec5cfe40cc2875dd83b4d3e8c5d11d 384 Gene3D G3DSA:3.40.640.10 58 278 3.3E-128 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_11875 b2ec5cfe40cc2875dd83b4d3e8c5d11d 384 Pfam PF00155 Aminotransferase class I and II 29 375 3.6E-66 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AP3564_11875 b2ec5cfe40cc2875dd83b4d3e8c5d11d 384 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 228 241 - T 13-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 AP3564_11875 b2ec5cfe40cc2875dd83b4d3e8c5d11d 384 SUPERFAMILY SSF53383 5 379 1.34E-110 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_05280 1f28b203aa804956a9fc333d4931c7d7 653 SUPERFAMILY SSF140990 413 609 7.72E-77 T 13-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 AP3564_05280 1f28b203aa804956a9fc333d4931c7d7 653 Gene3D G3DSA:1.20.58.760 413 625 1.8E-78 T 13-10-2018 AP3564_05280 1f28b203aa804956a9fc333d4931c7d7 653 Pfam PF01434 Peptidase family M41 393 601 4.1E-89 T 13-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 AP3564_05280 1f28b203aa804956a9fc333d4931c7d7 653 Pfam PF06480 FtsH Extracellular 9 60 2.8E-9 T 13-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 AP3564_05280 1f28b203aa804956a9fc333d4931c7d7 653 SUPERFAMILY SSF52540 155 403 3.24E-74 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_05280 1f28b203aa804956a9fc333d4931c7d7 653 SMART SM00382 195 334 5.0E-26 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_05280 1f28b203aa804956a9fc333d4931c7d7 653 Gene3D G3DSA:3.40.50.300 150 332 5.4E-72 T 13-10-2018 AP3564_05280 1f28b203aa804956a9fc333d4931c7d7 653 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 199 331 7.7E-47 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AP3564_05280 1f28b203aa804956a9fc333d4931c7d7 653 Gene3D G3DSA:1.10.8.60 333 410 1.2E-30 T 13-10-2018 AP3564_05280 1f28b203aa804956a9fc333d4931c7d7 653 ProSitePatterns PS00674 AAA-protein family signature. 302 320 - T 13-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 AP3564_05280 1f28b203aa804956a9fc333d4931c7d7 653 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 3 626 39.132 T 13-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 AP3564_05280 1f28b203aa804956a9fc333d4931c7d7 653 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 111 602 1.3E-250 T 13-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 AP3564_07250 08b38586b763e2474058a6cd0aa7abbd 283 Pfam PF13612 Transposase DDE domain 111 267 1.1E-25 T 13-10-2018 IPR025668 Transposase DDE domain AP3564_18815 b16152a8778f51e052b89d4d222d397a 379 Gene3D G3DSA:3.10.350.10 1 56 1.5E-17 T 13-10-2018 IPR036779 LysM domain superfamily AP3564_18815 b16152a8778f51e052b89d4d222d397a 379 TIGRFAM TIGR02899 spore_safA: spore coat assembly protein SafA 6 49 3.0E-27 T 13-10-2018 IPR014248 Spore coat assembly protein SafA AP3564_18815 b16152a8778f51e052b89d4d222d397a 379 SUPERFAMILY SSF54106 2 48 1.07E-12 T 13-10-2018 AP3564_18815 b16152a8778f51e052b89d4d222d397a 379 SMART SM00257 3 48 4.9E-19 T 13-10-2018 IPR018392 LysM domain AP3564_18815 b16152a8778f51e052b89d4d222d397a 379 Pfam PF01476 LysM domain 4 48 5.5E-17 T 13-10-2018 IPR018392 LysM domain AP3564_05180 64ac8e84a7cc4f6d43224d55b2b171f5 1175 Gene3D G3DSA:3.30.2060.10 139 224 5.5E-66 T 13-10-2018 AP3564_05180 64ac8e84a7cc4f6d43224d55b2b171f5 1175 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 156 1096 0.0 T 13-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 AP3564_05180 64ac8e84a7cc4f6d43224d55b2b171f5 1175 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 30 1145 28.94 T 13-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 AP3564_05180 64ac8e84a7cc4f6d43224d55b2b171f5 1175 SUPERFAMILY SSF143517 1009 1166 1.19E-36 T 13-10-2018 IPR037235 TRCF-like, C-terminal domain AP3564_05180 64ac8e84a7cc4f6d43224d55b2b171f5 1175 SMART SM01058 497 594 2.6E-50 T 13-10-2018 IPR003711 CarD-like/TRCF domain AP3564_05180 64ac8e84a7cc4f6d43224d55b2b171f5 1175 SMART SM00982 1022 1122 4.6E-33 T 13-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 AP3564_05180 64ac8e84a7cc4f6d43224d55b2b171f5 1175 Pfam PF02559 CarD-like/TRCF domain 498 593 5.8E-32 T 13-10-2018 IPR003711 CarD-like/TRCF domain AP3564_05180 64ac8e84a7cc4f6d43224d55b2b171f5 1175 SUPERFAMILY SSF52540 541 801 8.69E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_05180 64ac8e84a7cc4f6d43224d55b2b171f5 1175 SMART SM00490 844 928 2.7E-19 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_05180 64ac8e84a7cc4f6d43224d55b2b171f5 1175 SUPERFAMILY SSF52540 800 1007 5.56E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_05180 64ac8e84a7cc4f6d43224d55b2b171f5 1175 Gene3D G3DSA:3.40.50.300 560 799 1.9E-247 T 13-10-2018 AP3564_05180 64ac8e84a7cc4f6d43224d55b2b171f5 1175 Gene3D G3DSA:2.30.30.840 501 559 1.9E-247 T 13-10-2018 AP3564_05180 64ac8e84a7cc4f6d43224d55b2b171f5 1175 Pfam PF00271 Helicase conserved C-terminal domain 826 927 2.0E-18 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_05180 64ac8e84a7cc4f6d43224d55b2b171f5 1175 SUPERFAMILY SSF52540 377 488 5.15E-24 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_05180 64ac8e84a7cc4f6d43224d55b2b171f5 1175 SUPERFAMILY SSF141259 488 566 6.02E-27 T 13-10-2018 IPR036101 CarD-like/TRCF domain superfamily AP3564_05180 64ac8e84a7cc4f6d43224d55b2b171f5 1175 Gene3D G3DSA:3.40.50.11180 35 324 5.5E-66 T 13-10-2018 AP3564_05180 64ac8e84a7cc4f6d43224d55b2b171f5 1175 SMART SM00487 618 808 4.2E-36 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AP3564_05180 64ac8e84a7cc4f6d43224d55b2b171f5 1175 Pfam PF03461 TRCF domain 1023 1115 5.4E-26 T 13-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 AP3564_05180 64ac8e84a7cc4f6d43224d55b2b171f5 1175 Pfam PF00270 DEAD/DEAH box helicase 625 782 2.7E-17 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AP3564_05180 64ac8e84a7cc4f6d43224d55b2b171f5 1175 SUPERFAMILY SSF52540 14 367 2.84E-94 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_05180 64ac8e84a7cc4f6d43224d55b2b171f5 1175 Gene3D G3DSA:3.90.1150.50 1018 1175 2.3E-42 T 13-10-2018 IPR037235 TRCF-like, C-terminal domain AP3564_05180 64ac8e84a7cc4f6d43224d55b2b171f5 1175 Gene3D G3DSA:3.40.50.300 496 1006 1.9E-247 T 13-10-2018 AP3564_12155 56e94a7000aa4a5d7d92eb3f23f7b7a8 336 Pfam PF09084 NMT1/THI5 like 55 259 2.3E-48 T 13-10-2018 IPR015168 SsuA/THI5-like AP3564_12155 56e94a7000aa4a5d7d92eb3f23f7b7a8 336 Gene3D G3DSA:3.40.190.10 50 332 2.8E-77 T 13-10-2018 AP3564_12155 56e94a7000aa4a5d7d92eb3f23f7b7a8 336 SUPERFAMILY SSF53850 51 269 4.31E-31 T 13-10-2018 AP3564_12155 56e94a7000aa4a5d7d92eb3f23f7b7a8 336 Gene3D G3DSA:3.40.190.10 126 220 2.8E-77 T 13-10-2018 AP3564_06480 30439b8afd79b0cd630cc2bed7d25d58 363 SUPERFAMILY SSF48208 143 338 3.45E-9 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 AP3564_19365 60c485cde9c757002dfa0b8014f4b7dc 423 Gene3D G3DSA:3.40.718.10 1 423 5.4E-186 T 13-10-2018 AP3564_19365 60c485cde9c757002dfa0b8014f4b7dc 423 SUPERFAMILY SSF53659 3 422 5.38E-144 T 13-10-2018 AP3564_19365 60c485cde9c757002dfa0b8014f4b7dc 423 SMART SM01329 21 418 7.2E-191 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AP3564_19365 60c485cde9c757002dfa0b8014f4b7dc 423 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 307 326 - T 13-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 AP3564_19365 60c485cde9c757002dfa0b8014f4b7dc 423 TIGRFAM TIGR00183 prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent 2 422 1.1E-225 T 13-10-2018 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 AP3564_19365 60c485cde9c757002dfa0b8014f4b7dc 423 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 22 417 2.4E-127 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AP3564_19395 f1644366f691e0996bfaaaf3d4c95796 287 Gene3D G3DSA:3.90.226.10 28 283 1.6E-92 T 13-10-2018 AP3564_19395 f1644366f691e0996bfaaaf3d4c95796 287 Pfam PF01039 Carboxyl transferase domain 62 242 4.4E-21 T 13-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 AP3564_19395 f1644366f691e0996bfaaaf3d4c95796 287 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 200 217 4.6E-38 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AP3564_19395 f1644366f691e0996bfaaaf3d4c95796 287 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 129 143 4.6E-38 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AP3564_19395 f1644366f691e0996bfaaaf3d4c95796 287 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 229 240 4.6E-38 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AP3564_19395 f1644366f691e0996bfaaaf3d4c95796 287 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 163 181 4.6E-38 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AP3564_19395 f1644366f691e0996bfaaaf3d4c95796 287 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 251 260 4.6E-38 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AP3564_19395 f1644366f691e0996bfaaaf3d4c95796 287 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 16 283 2.5E-132 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AP3564_19395 f1644366f691e0996bfaaaf3d4c95796 287 SUPERFAMILY SSF52096 28 280 3.13E-83 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AP3564_19395 f1644366f691e0996bfaaaf3d4c95796 287 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 3 281 39.081 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AP3564_02580 801627b240a707f44e9c5e883e549cb9 87 PRINTS PR00107 Phosphocarrier protein signature 38 53 1.2E-13 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like AP3564_02580 801627b240a707f44e9c5e883e549cb9 87 PRINTS PR00107 Phosphocarrier protein signature 53 70 1.2E-13 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like AP3564_02580 801627b240a707f44e9c5e883e549cb9 87 PRINTS PR00107 Phosphocarrier protein signature 13 29 1.2E-13 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like AP3564_02580 801627b240a707f44e9c5e883e549cb9 87 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 78 7.1E-26 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like AP3564_02580 801627b240a707f44e9c5e883e549cb9 87 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 13-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site AP3564_02580 801627b240a707f44e9c5e883e549cb9 87 SUPERFAMILY SSF55594 1 84 8.5E-24 T 13-10-2018 IPR035895 HPr-like superfamily AP3564_02580 801627b240a707f44e9c5e883e549cb9 87 Pfam PF00381 PTS HPr component phosphorylation site 3 81 1.7E-25 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like AP3564_02580 801627b240a707f44e9c5e883e549cb9 87 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 13-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site AP3564_02580 801627b240a707f44e9c5e883e549cb9 87 Gene3D G3DSA:3.30.1340.10 1 84 3.9E-27 T 13-10-2018 IPR035895 HPr-like superfamily AP3564_10390 27b355b6f8a3a113d93279967d6c79f0 362 Pfam PF02625 XdhC and CoxI family 14 78 1.3E-16 T 13-10-2018 IPR003777 XdhC- CoxI AP3564_10390 27b355b6f8a3a113d93279967d6c79f0 362 Pfam PF13478 XdhC Rossmann domain 202 341 7.0E-37 T 13-10-2018 IPR027051 XdhC Rossmann domain AP3564_10390 27b355b6f8a3a113d93279967d6c79f0 362 Gene3D G3DSA:3.40.50.720 200 360 3.2E-50 T 13-10-2018 AP3564_12070 d295123e4176a6d7360ed5e2300718cd 100 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 9 99 3.0E-39 T 13-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AP3564_12070 d295123e4176a6d7360ed5e2300718cd 100 Gene3D G3DSA:3.30.280.10 1 100 2.7E-47 T 13-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AP3564_12070 d295123e4176a6d7360ed5e2300718cd 100 Pfam PF00547 Urease, gamma subunit 1 99 2.4E-46 T 13-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AP3564_12070 d295123e4176a6d7360ed5e2300718cd 100 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 1 100 1.1E-49 T 13-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AP3564_12070 d295123e4176a6d7360ed5e2300718cd 100 SUPERFAMILY SSF54111 1 100 3.66E-45 T 13-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AP3564_12070 d295123e4176a6d7360ed5e2300718cd 100 Hamap MF_00739 Urease subunit gamma [ureA]. 1 100 33.951 T 13-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AP3564_12070 d295123e4176a6d7360ed5e2300718cd 100 PIRSF PIRSF001223 1 100 2.5E-52 T 13-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AP3564_15545 e88b7ffa1271b60318681158547cb399 348 Pfam PF13190 PDGLE domain 233 334 3.9E-35 T 13-10-2018 IPR025937 PDGLE domain AP3564_15545 e88b7ffa1271b60318681158547cb399 348 Gene3D G3DSA:1.10.1760.20 1 208 2.6E-62 T 13-10-2018 AP3564_15545 e88b7ffa1271b60318681158547cb399 348 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 2 209 1.9E-67 T 13-10-2018 IPR002751 Metal transport protein CbiM/NikMN GO:0000041|GO:0016021 AP3564_19340 082872933708a0f600df29cdd9eb1c97 304 SMART SM00244 34 201 2.2E-27 T 13-10-2018 IPR001107 Band 7 domain AP3564_19340 082872933708a0f600df29cdd9eb1c97 304 PIRSF PIRSF005651 9 304 2.4E-98 T 13-10-2018 IPR010200 HflC GO:0016021|GO:0052547 AP3564_19340 082872933708a0f600df29cdd9eb1c97 304 SUPERFAMILY SSF117892 66 206 4.58E-24 T 13-10-2018 IPR036013 Band 7/SPFH domain superfamily AP3564_19340 082872933708a0f600df29cdd9eb1c97 304 Gene3D G3DSA:3.30.479.30 63 202 7.6E-24 T 13-10-2018 AP3564_19340 082872933708a0f600df29cdd9eb1c97 304 Pfam PF01145 SPFH domain / Band 7 family 38 217 5.0E-27 T 13-10-2018 IPR001107 Band 7 domain AP3564_18070 5939ef7491cc1b48466e79f89c4258f2 103 Pfam PF07963 Prokaryotic N-terminal methylation motif 5 29 2.9E-8 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site AP3564_18070 5939ef7491cc1b48466e79f89c4258f2 103 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 8 29 2.4E-7 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site AP3564_18070 5939ef7491cc1b48466e79f89c4258f2 103 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 8 28 - T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site AP3564_18070 5939ef7491cc1b48466e79f89c4258f2 103 PIRSF PIRSF029928 1 102 6.7E-31 T 13-10-2018 IPR016940 ComG operon protein C GO:0030420 AP3564_18070 5939ef7491cc1b48466e79f89c4258f2 103 Gene3D G3DSA:3.30.700.10 10 102 6.6E-8 T 13-10-2018 AP3564_18070 5939ef7491cc1b48466e79f89c4258f2 103 SUPERFAMILY SSF54523 10 89 4.08E-13 T 13-10-2018 AP3564_01220 0dff885392a5cca9e60eb5d60842d84e 188 SUPERFAMILY SSF56349 9 179 2.59E-33 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AP3564_01220 0dff885392a5cca9e60eb5d60842d84e 188 Pfam PF00589 Phage integrase family 11 172 3.9E-22 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AP3564_01220 0dff885392a5cca9e60eb5d60842d84e 188 Gene3D G3DSA:1.10.443.10 5 186 2.9E-28 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AP3564_08160 0b408a487634feec724592b3e39bdcd1 662 SUPERFAMILY SSF52540 351 596 1.49E-70 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_08160 0b408a487634feec724592b3e39bdcd1 662 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 376 389 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AP3564_08160 0b408a487634feec724592b3e39bdcd1 662 Pfam PF01590 GAF domain 85 217 7.4E-7 T 13-10-2018 IPR003018 GAF domain GO:0005515 AP3564_08160 0b408a487634feec724592b3e39bdcd1 662 Pfam PF00158 Sigma-54 interaction domain 352 519 5.9E-66 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AP3564_08160 0b408a487634feec724592b3e39bdcd1 662 SUPERFAMILY SSF46689 566 659 5.12E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_08160 0b408a487634feec724592b3e39bdcd1 662 Pfam PF02954 Bacterial regulatory protein, Fis family 620 657 1.1E-10 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AP3564_08160 0b408a487634feec724592b3e39bdcd1 662 SMART SM00382 372 524 8.4E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_08160 0b408a487634feec724592b3e39bdcd1 662 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 640 660 1.4E-7 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AP3564_08160 0b408a487634feec724592b3e39bdcd1 662 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 623 640 1.4E-7 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AP3564_08160 0b408a487634feec724592b3e39bdcd1 662 Gene3D G3DSA:3.30.450.40 32 220 1.8E-56 T 13-10-2018 IPR029016 GAF-like domain superfamily AP3564_08160 0b408a487634feec724592b3e39bdcd1 662 Gene3D G3DSA:3.40.50.300 341 523 4.1E-63 T 13-10-2018 AP3564_08160 0b408a487634feec724592b3e39bdcd1 662 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 439 454 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AP3564_08160 0b408a487634feec724592b3e39bdcd1 662 Gene3D G3DSA:1.10.8.60 524 603 1.0E-26 T 13-10-2018 AP3564_08160 0b408a487634feec724592b3e39bdcd1 662 Gene3D G3DSA:1.10.10.60 604 661 2.7E-12 T 13-10-2018 AP3564_05795 a496967b906b0fbec3a1410e0d982571 132 Gene3D G3DSA:3.30.1370.30 4 74 5.5E-35 T 13-10-2018 AP3564_05795 a496967b906b0fbec3a1410e0d982571 132 Gene3D G3DSA:3.30.1490.10 75 132 4.9E-27 T 13-10-2018 AP3564_05795 a496967b906b0fbec3a1410e0d982571 132 Pfam PF00410 Ribosomal protein S8 5 132 5.0E-56 T 13-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05795 a496967b906b0fbec3a1410e0d982571 132 ProSitePatterns PS00053 Ribosomal protein S8 signature. 102 119 - T 13-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05795 a496967b906b0fbec3a1410e0d982571 132 SUPERFAMILY SSF56047 2 132 2.88E-51 T 13-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05795 a496967b906b0fbec3a1410e0d982571 132 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 132 33.621 T 13-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_00710 14b56f87a9946ee978fbe27850f37f6b 721 Pfam PF01841 Transglutaminase-like superfamily 421 543 5.7E-25 T 13-10-2018 IPR002931 Transglutaminase-like AP3564_00710 14b56f87a9946ee978fbe27850f37f6b 721 SMART SM00460 470 545 7.6E-24 T 13-10-2018 IPR002931 Transglutaminase-like AP3564_00710 14b56f87a9946ee978fbe27850f37f6b 721 Pfam PF13559 Domain of unknown function (DUF4129) 647 712 2.5E-6 T 13-10-2018 IPR025403 Domain of unknown function DUF4129 AP3564_00710 14b56f87a9946ee978fbe27850f37f6b 721 SUPERFAMILY SSF54001 402 551 2.94E-42 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily AP3564_00710 14b56f87a9946ee978fbe27850f37f6b 721 Gene3D G3DSA:3.10.620.30 386 566 3.6E-22 T 13-10-2018 AP3564_01395 8ff4644cbdb0a93d8933ef528d33488e 262 Gene3D G3DSA:3.40.50.1000 87 185 9.9E-76 T 13-10-2018 IPR023214 HAD superfamily AP3564_01395 8ff4644cbdb0a93d8933ef528d33488e 262 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 12 234 3.2E-41 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA AP3564_01395 8ff4644cbdb0a93d8933ef528d33488e 262 Pfam PF13344 Haloacid dehalogenase-like hydrolase 11 108 4.7E-25 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA AP3564_01395 8ff4644cbdb0a93d8933ef528d33488e 262 PIRSF PIRSF000915 3 262 6.3E-61 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA AP3564_01395 8ff4644cbdb0a93d8933ef528d33488e 262 Pfam PF13242 HAD-hyrolase-like 184 256 2.0E-18 T 13-10-2018 AP3564_01395 8ff4644cbdb0a93d8933ef528d33488e 262 Gene3D G3DSA:3.40.50.1000 11 255 9.9E-76 T 13-10-2018 IPR023214 HAD superfamily AP3564_01395 8ff4644cbdb0a93d8933ef528d33488e 262 SUPERFAMILY SSF56784 6 257 1.38E-60 T 13-10-2018 IPR036412 HAD-like superfamily AP3564_15830 ba12669482df73069c558681af053808 585 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 14 174 1.6E-37 T 13-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 AP3564_15830 ba12669482df73069c558681af053808 585 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 210 452 1.7E-63 T 13-10-2018 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 AP3564_15830 ba12669482df73069c558681af053808 585 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 477 564 4.8E-11 T 13-10-2018 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II AP3564_15830 ba12669482df73069c558681af053808 585 Gene3D G3DSA:3.40.50.920 465 579 9.3E-31 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AP3564_15830 ba12669482df73069c558681af053808 585 Gene3D G3DSA:3.40.50.970 187 386 5.7E-78 T 13-10-2018 AP3564_15830 ba12669482df73069c558681af053808 585 SUPERFAMILY SSF52922 472 581 3.45E-24 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AP3564_15830 ba12669482df73069c558681af053808 585 SUPERFAMILY SSF52518 196 458 3.19E-75 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold AP3564_15830 ba12669482df73069c558681af053808 585 SUPERFAMILY SSF53323 1 221 4.71E-43 T 13-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 AP3564_15830 ba12669482df73069c558681af053808 585 TIGRFAM TIGR03710 OAFO_sf: 2-oxoacid:acceptor oxidoreductase, alpha subunit 5 573 1.7E-218 T 13-10-2018 IPR022367 2-oxoacid:acceptor oxidoreductase, alpha subunit KEGG: 00020+1.2.7.3|KEGG: 00720+1.2.7.3|MetaCyc: PWY-5392|MetaCyc: PWY-6969 AP3564_15830 ba12669482df73069c558681af053808 585 Gene3D G3DSA:3.40.920.10 1 186 1.0E-25 T 13-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 AP3564_11660 ec7156546cd2d46383d875a556d6f55d 104 Pfam PF01906 Putative heavy-metal-binding 1 103 8.4E-40 T 13-10-2018 IPR002765 Uncharacterised protein family UPF0145 AP3564_11660 ec7156546cd2d46383d875a556d6f55d 104 Hamap MF_00338 UPF0145 protein YbjQ [ybjQ]. 1 103 25.731 T 13-10-2018 IPR002765 Uncharacterised protein family UPF0145 AP3564_11660 ec7156546cd2d46383d875a556d6f55d 104 SUPERFAMILY SSF117782 1 103 9.02E-38 T 13-10-2018 IPR035439 UPF0145 domain superfamily AP3564_11660 ec7156546cd2d46383d875a556d6f55d 104 Gene3D G3DSA:3.30.110.70 1 104 3.6E-44 T 13-10-2018 AP3564_08545 207fbddfc76dfd87df9f2ac063f837eb 212 Pfam PF01634 ATP phosphoribosyltransferase 51 201 5.5E-50 T 13-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 AP3564_08545 207fbddfc76dfd87df9f2ac063f837eb 212 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 140 161 - T 13-10-2018 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 AP3564_08545 207fbddfc76dfd87df9f2ac063f837eb 212 Gene3D G3DSA:3.40.190.10 92 173 6.5E-79 T 13-10-2018 AP3564_08545 207fbddfc76dfd87df9f2ac063f837eb 212 SUPERFAMILY SSF53850 1 204 4.34E-66 T 13-10-2018 AP3564_08545 207fbddfc76dfd87df9f2ac063f837eb 212 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 2 181 1.2E-62 T 13-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 AP3564_08545 207fbddfc76dfd87df9f2ac063f837eb 212 Hamap MF_01018 ATP phosphoribosyltransferase [hisG]. 1 205 56.259 T 13-10-2018 IPR024893 ATP phosphoribosyltransferase HisG, short form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 AP3564_08545 207fbddfc76dfd87df9f2ac063f837eb 212 Gene3D G3DSA:3.40.190.10 3 194 6.5E-79 T 13-10-2018 AP3564_16920 04cde9995cbdb931ee9a5fff2a527395 760 Gene3D G3DSA:3.40.50.300 269 426 8.7E-23 T 13-10-2018 AP3564_16920 04cde9995cbdb931ee9a5fff2a527395 760 SMART SM00487 56 260 1.6E-36 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AP3564_16920 04cde9995cbdb931ee9a5fff2a527395 760 SMART SM00490 307 394 4.8E-15 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_16920 04cde9995cbdb931ee9a5fff2a527395 760 SUPERFAMILY SSF52540 74 450 9.35E-36 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_16920 04cde9995cbdb931ee9a5fff2a527395 760 Pfam PF00271 Helicase conserved C-terminal domain 288 393 3.4E-15 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_16920 04cde9995cbdb931ee9a5fff2a527395 760 Pfam PF00270 DEAD/DEAH box helicase 62 231 1.1E-29 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AP3564_16920 04cde9995cbdb931ee9a5fff2a527395 760 Gene3D G3DSA:3.40.50.300 32 249 5.3E-53 T 13-10-2018 AP3564_16920 04cde9995cbdb931ee9a5fff2a527395 760 SUPERFAMILY SSF52540 42 242 4.05E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_16920 04cde9995cbdb931ee9a5fff2a527395 760 Pfam PF09369 Domain of unknown function (DUF1998) 653 732 1.1E-18 T 13-10-2018 IPR018973 DEAD/DEAH-box helicase, putative AP3564_14610 f194deb9acca47ff29246e13bff66af7 169 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 5 134 7.0E-34 T 13-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 AP3564_14610 f194deb9acca47ff29246e13bff66af7 169 SUPERFAMILY SSF52540 3 128 4.79E-17 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_14610 f194deb9acca47ff29246e13bff66af7 169 TIGRFAM TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B 5 150 3.3E-35 T 13-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 AP3564_14610 f194deb9acca47ff29246e13bff66af7 169 Gene3D G3DSA:3.40.50.300 1 164 2.0E-48 T 13-10-2018 AP3564_03085 6e2368f94a6aa41ddd2118d88736446b 314 Pfam PF01966 HD domain 161 278 3.1E-11 T 13-10-2018 IPR006674 HD domain AP3564_03085 6e2368f94a6aa41ddd2118d88736446b 314 SUPERFAMILY SSF50249 31 93 1.82E-5 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_03085 6e2368f94a6aa41ddd2118d88736446b 314 SMART SM00471 156 288 2.3E-7 T 13-10-2018 IPR003607 HD/PDEase domain AP3564_03085 6e2368f94a6aa41ddd2118d88736446b 314 Gene3D G3DSA:2.40.50.140 6 99 7.0E-7 T 13-10-2018 AP3564_03085 6e2368f94a6aa41ddd2118d88736446b 314 Hamap MF_01427 3'-5' exoribonuclease YhaM [yhaM]. 1 313 62.757 T 13-10-2018 IPR020873 3'-5' exoribonuclease YhaM GO:0000175 AP3564_03085 6e2368f94a6aa41ddd2118d88736446b 314 Gene3D G3DSA:1.10.3210.10 121 291 6.8E-12 T 13-10-2018 AP3564_03085 6e2368f94a6aa41ddd2118d88736446b 314 SUPERFAMILY SSF109604 136 279 2.32E-15 T 13-10-2018 AP3564_18595 302e45acb3988d53fbf59c0d497a57ea 231 Hamap MF_01684 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [mtnN]. 2 230 46.953 T 13-10-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AP3564_18595 302e45acb3988d53fbf59c0d497a57ea 231 TIGRFAM TIGR01704 MTA/SAH-Nsdase: MTA/SAH nucleosidase 2 229 5.6E-113 T 13-10-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AP3564_18595 302e45acb3988d53fbf59c0d497a57ea 231 SUPERFAMILY SSF53167 1 230 1.09E-71 T 13-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 AP3564_18595 302e45acb3988d53fbf59c0d497a57ea 231 Pfam PF01048 Phosphorylase superfamily 2 227 7.2E-51 T 13-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AP3564_18595 302e45acb3988d53fbf59c0d497a57ea 231 Gene3D G3DSA:3.40.50.1580 1 231 1.1E-70 T 13-10-2018 AP3564_05690 8663fe02e65567f23178b9a81cef28e7 1200 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 10 1182 0.0 T 13-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_05690 8663fe02e65567f23178b9a81cef28e7 1200 Pfam PF05000 RNA polymerase Rpb1, domain 4 693 760 3.3E-15 T 13-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_05690 8663fe02e65567f23178b9a81cef28e7 1200 SUPERFAMILY SSF64484 5 1182 0.0 T 13-10-2018 AP3564_05690 8663fe02e65567f23178b9a81cef28e7 1200 Pfam PF04998 RNA polymerase Rpb1, domain 5 771 1131 1.1E-66 T 13-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_05690 8663fe02e65567f23178b9a81cef28e7 1200 Pfam PF04997 RNA polymerase Rpb1, domain 1 6 331 6.8E-90 T 13-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_05690 8663fe02e65567f23178b9a81cef28e7 1200 Gene3D G3DSA:1.10.40.90 363 405 6.3E-24 T 13-10-2018 AP3564_05690 8663fe02e65567f23178b9a81cef28e7 1200 Pfam PF00623 RNA polymerase Rpb1, domain 2 333 474 1.7E-38 T 13-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_05690 8663fe02e65567f23178b9a81cef28e7 1200 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 4 1192 18.844 T 13-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_05690 8663fe02e65567f23178b9a81cef28e7 1200 Gene3D G3DSA:1.10.150.390 1131 1194 6.9E-29 T 13-10-2018 AP3564_05690 8663fe02e65567f23178b9a81cef28e7 1200 Gene3D G3DSA:2.40.50.100 967 1030 1.2E-68 T 13-10-2018 AP3564_05690 8663fe02e65567f23178b9a81cef28e7 1200 Gene3D G3DSA:1.10.1790.20 951 1129 1.2E-68 T 13-10-2018 AP3564_05690 8663fe02e65567f23178b9a81cef28e7 1200 Gene3D G3DSA:1.10.274.100 479 660 5.4E-49 T 13-10-2018 AP3564_05690 8663fe02e65567f23178b9a81cef28e7 1200 SMART SM00663 224 503 2.1E-186 T 13-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_05690 8663fe02e65567f23178b9a81cef28e7 1200 Pfam PF04983 RNA polymerase Rpb1, domain 3 478 664 7.0E-35 T 13-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_05690 8663fe02e65567f23178b9a81cef28e7 1200 Gene3D G3DSA:1.10.132.30 661 795 6.7E-60 T 13-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_01265 43f534166e488b5912f6d285314596cd 128 SUPERFAMILY SSF110857 4 123 1.83E-24 T 13-10-2018 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily AP3564_01265 43f534166e488b5912f6d285314596cd 128 Gene3D G3DSA:3.10.490.10 3 124 1.1E-26 T 13-10-2018 AP3564_01265 43f534166e488b5912f6d285314596cd 128 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 5 121 3.7E-23 T 13-10-2018 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like AP3564_08865 686ef1cfb19d51f22f895e60b0bfb7ee 350 Pfam PF01032 FecCD transport family 33 346 2.8E-90 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 AP3564_08865 686ef1cfb19d51f22f895e60b0bfb7ee 350 Gene3D G3DSA:1.10.3470.10 18 350 2.0E-93 T 13-10-2018 IPR037294 ABC transporter, BtuC-like AP3564_08865 686ef1cfb19d51f22f895e60b0bfb7ee 350 SUPERFAMILY SSF81345 16 346 3.79E-81 T 13-10-2018 IPR037294 ABC transporter, BtuC-like AP3564_18945 9f9016c23b6bc27dc3bb8b18f58c0ba7 188 PIRSF PIRSF006305 1 187 4.1E-63 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 AP3564_18945 9f9016c23b6bc27dc3bb8b18f58c0ba7 188 TIGRFAM TIGR00172 maf: septum formation protein Maf 3 182 4.2E-61 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 AP3564_18945 9f9016c23b6bc27dc3bb8b18f58c0ba7 188 Gene3D G3DSA:3.90.950.10 1 188 5.1E-74 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AP3564_18945 9f9016c23b6bc27dc3bb8b18f58c0ba7 188 SUPERFAMILY SSF52972 2 183 2.92E-63 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AP3564_18945 9f9016c23b6bc27dc3bb8b18f58c0ba7 188 Hamap MF_00528 Septum formation protein Maf [maf]. 3 188 32.258 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 AP3564_18945 9f9016c23b6bc27dc3bb8b18f58c0ba7 188 Pfam PF02545 Maf-like protein 3 183 1.2E-58 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 AP3564_08105 ea0182a648ae4e756c2858f33e897d9a 216 Gene3D G3DSA:3.40.225.10 3 208 1.0E-57 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily AP3564_08105 ea0182a648ae4e756c2858f33e897d9a 216 SMART SM01007 6 180 4.2E-46 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal AP3564_08105 ea0182a648ae4e756c2858f33e897d9a 216 SUPERFAMILY SSF53639 4 205 2.75E-49 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily AP3564_08105 ea0182a648ae4e756c2858f33e897d9a 216 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 8 178 3.2E-42 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal AP3564_10660 4ccdeaa2a88ea6f96ca212dfda6c02b1 371 Pfam PF14294 Domain of unknown function (DUF4372) 8 76 6.3E-8 T 13-10-2018 IPR025399 Domain of unknown function DUF4372 AP3564_10660 4ccdeaa2a88ea6f96ca212dfda6c02b1 371 Pfam PF01609 Transposase DDE domain 121 329 3.2E-29 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_10660 4ccdeaa2a88ea6f96ca212dfda6c02b1 371 SUPERFAMILY SSF53098 88 359 1.06E-34 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_11195 c87fa885c0351212577fe5d9fe9b6904 254 Gene3D G3DSA:1.10.10.10 8 81 4.2E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_11195 c87fa885c0351212577fe5d9fe9b6904 254 Pfam PF09339 IclR helix-turn-helix domain 12 62 5.9E-10 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AP3564_11195 c87fa885c0351212577fe5d9fe9b6904 254 SMART SM00346 10 100 3.9E-13 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AP3564_11195 c87fa885c0351212577fe5d9fe9b6904 254 Pfam PF01614 Bacterial transcriptional regulator 134 228 6.4E-7 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal AP3564_11195 c87fa885c0351212577fe5d9fe9b6904 254 Gene3D G3DSA:3.30.450.40 82 254 2.5E-19 T 13-10-2018 IPR029016 GAF-like domain superfamily AP3564_11195 c87fa885c0351212577fe5d9fe9b6904 254 SUPERFAMILY SSF46785 10 84 7.05E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_11195 c87fa885c0351212577fe5d9fe9b6904 254 SUPERFAMILY SSF55781 77 251 5.4E-20 T 13-10-2018 AP3564_00925 4c4cf1cb5548c65ae1a721905235130d 522 Pfam PF13007 Transposase C of IS166 homeodomain 33 102 1.7E-10 T 13-10-2018 IPR024463 Transposase TnpC, homeodomain AP3564_00925 4c4cf1cb5548c65ae1a721905235130d 522 Pfam PF03050 Transposase IS66 family 175 460 1.9E-101 T 13-10-2018 IPR004291 Transposase, IS66 AP3564_00925 4c4cf1cb5548c65ae1a721905235130d 522 Pfam PF13005 zinc-finger binding domain of transposase IS66 110 154 2.8E-12 T 13-10-2018 IPR024474 Zinc-finger binding domain of transposase IS66 AP3564_00925 4c4cf1cb5548c65ae1a721905235130d 522 Pfam PF13817 IS66 C-terminal element 467 507 1.9E-15 T 13-10-2018 IPR039552 Transposase IS66, C-terminal AP3564_10725 4c4cf1cb5548c65ae1a721905235130d 522 Pfam PF13007 Transposase C of IS166 homeodomain 33 102 1.7E-10 T 13-10-2018 IPR024463 Transposase TnpC, homeodomain AP3564_10725 4c4cf1cb5548c65ae1a721905235130d 522 Pfam PF03050 Transposase IS66 family 175 460 1.9E-101 T 13-10-2018 IPR004291 Transposase, IS66 AP3564_10725 4c4cf1cb5548c65ae1a721905235130d 522 Pfam PF13005 zinc-finger binding domain of transposase IS66 110 154 2.8E-12 T 13-10-2018 IPR024474 Zinc-finger binding domain of transposase IS66 AP3564_10725 4c4cf1cb5548c65ae1a721905235130d 522 Pfam PF13817 IS66 C-terminal element 467 507 1.9E-15 T 13-10-2018 IPR039552 Transposase IS66, C-terminal AP3564_08870 990ab8f523c2f261857ae458a994272d 273 SMART SM00382 28 216 5.9E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_08870 990ab8f523c2f261857ae458a994272d 273 SUPERFAMILY SSF52540 4 229 5.0E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_08870 990ab8f523c2f261857ae458a994272d 273 Pfam PF00005 ABC transporter 20 167 1.6E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_08870 990ab8f523c2f261857ae458a994272d 273 Gene3D G3DSA:3.40.50.300 4 253 4.6E-67 T 13-10-2018 AP3564_08870 990ab8f523c2f261857ae458a994272d 273 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_19545 5c30ba21f64aeb4e157d2d9aabdd168a 211 SUPERFAMILY SSF48498 81 199 3.26E-11 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AP3564_19545 5c30ba21f64aeb4e157d2d9aabdd168a 211 Gene3D G3DSA:1.10.357.10 2 210 4.0E-38 T 13-10-2018 AP3564_19545 5c30ba21f64aeb4e157d2d9aabdd168a 211 ProSitePatterns PS01081 TetR-type HTH domain signature. 25 56 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AP3564_19545 5c30ba21f64aeb4e157d2d9aabdd168a 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 7.9E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_19545 5c30ba21f64aeb4e157d2d9aabdd168a 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 7.9E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_19545 5c30ba21f64aeb4e157d2d9aabdd168a 211 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 58 5.6E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_19545 5c30ba21f64aeb4e157d2d9aabdd168a 211 SUPERFAMILY SSF46689 5 77 9.75E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_07440 fbdbe7064a4c91fa7674287e3b5e9914 115 SUPERFAMILY SSF47406 73 103 1.96E-11 T 13-10-2018 IPR036281 SinR repressor/SinI anti-repressor, dimerisation domain superfamily GO:0006355|GO:0046983 AP3564_07440 fbdbe7064a4c91fa7674287e3b5e9914 115 Pfam PF08671 Anti-repressor SinI 73 100 3.0E-16 T 13-10-2018 IPR010981 SinR repressor/SinI anti-repressor, dimerisation domain GO:0006355|GO:0046983 AP3564_07440 fbdbe7064a4c91fa7674287e3b5e9914 115 SUPERFAMILY SSF47413 2 68 5.09E-19 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AP3564_07440 fbdbe7064a4c91fa7674287e3b5e9914 115 SMART SM00530 5 61 1.1E-15 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AP3564_07440 fbdbe7064a4c91fa7674287e3b5e9914 115 Gene3D G3DSA:1.10.260.40 1 111 3.9E-30 T 13-10-2018 AP3564_07440 fbdbe7064a4c91fa7674287e3b5e9914 115 Pfam PF01381 Helix-turn-helix 6 59 2.6E-16 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AP3564_07740 d39de3c12e92e67cc9b3d47cd653bf0d 390 Gene3D G3DSA:3.90.1150.10 279 389 1.4E-18 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_07740 d39de3c12e92e67cc9b3d47cd653bf0d 390 PIRSF PIRSF000390 18 388 6.9E-99 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AP3564_07740 d39de3c12e92e67cc9b3d47cd653bf0d 390 SUPERFAMILY SSF53383 19 386 5.98E-104 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_07740 d39de3c12e92e67cc9b3d47cd653bf0d 390 TIGRFAM TIGR04181 NHT_00031: aminotransferase, LLPSF_NHT_00031 family 22 381 7.5E-167 T 13-10-2018 IPR026385 Aminotransferase, LLPSF_NHT_00031 family AP3564_07740 d39de3c12e92e67cc9b3d47cd653bf0d 390 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 32 387 1.2E-92 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AP3564_07740 d39de3c12e92e67cc9b3d47cd653bf0d 390 Gene3D G3DSA:3.40.640.10 2 278 7.3E-95 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_13740 59dff97302ef4e39ce78f7c6698e5dbd 376 Pfam PF01266 FAD dependent oxidoreductase 7 352 4.1E-76 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AP3564_13740 59dff97302ef4e39ce78f7c6698e5dbd 376 Gene3D G3DSA:3.50.50.60 7 353 1.4E-127 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_13740 59dff97302ef4e39ce78f7c6698e5dbd 376 SUPERFAMILY SSF54373 225 312 1.31E-18 T 13-10-2018 AP3564_13740 59dff97302ef4e39ce78f7c6698e5dbd 376 Gene3D G3DSA:3.30.9.10 93 312 1.4E-127 T 13-10-2018 AP3564_13740 59dff97302ef4e39ce78f7c6698e5dbd 376 TIGRFAM TIGR02352 thiamin_ThiO: glycine oxidase ThiO 8 356 4.4E-100 T 13-10-2018 IPR012727 Glycine oxidase ThiO GO:0016491|GO:0050660 KEGG: 00730+1.4.3.19|MetaCyc: PWY-7396|MetaCyc: PWY-7806 AP3564_13740 59dff97302ef4e39ce78f7c6698e5dbd 376 SUPERFAMILY SSF51905 5 370 3.88E-56 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_07285 24f6d5df431789ca8cd606d1121e9d70 143 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 47 63 - T 13-10-2018 IPR002178 PTS EIIA type-2 domain AP3564_07285 24f6d5df431789ca8cd606d1121e9d70 143 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 3 141 7.9E-37 T 13-10-2018 IPR002178 PTS EIIA type-2 domain AP3564_07285 24f6d5df431789ca8cd606d1121e9d70 143 Gene3D G3DSA:3.40.930.10 1 142 4.8E-46 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 AP3564_07285 24f6d5df431789ca8cd606d1121e9d70 143 SUPERFAMILY SSF55804 3 141 6.41E-42 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 AP3564_16770 012ac406ea81d0ad31282fbf8d5aaf31 340 SUPERFAMILY SSF54211 218 333 4.93E-22 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AP3564_16770 012ac406ea81d0ad31282fbf8d5aaf31 340 Gene3D G3DSA:2.30.42.10 122 216 3.4E-23 T 13-10-2018 AP3564_16770 012ac406ea81d0ad31282fbf8d5aaf31 340 Gene3D G3DSA:3.30.230.10 217 338 1.8E-20 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AP3564_16770 012ac406ea81d0ad31282fbf8d5aaf31 340 Pfam PF13180 PDZ domain 126 195 8.5E-14 T 13-10-2018 IPR001478 PDZ domain GO:0005515 AP3564_16770 012ac406ea81d0ad31282fbf8d5aaf31 340 SMART SM00228 119 186 1.8E-7 T 13-10-2018 IPR001478 PDZ domain GO:0005515 AP3564_16770 012ac406ea81d0ad31282fbf8d5aaf31 340 SUPERFAMILY SSF50156 127 212 9.23E-17 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 AP3564_16770 012ac406ea81d0ad31282fbf8d5aaf31 340 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 232 331 7.4E-14 T 13-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 AP3564_08585 8034f71296d9e5fd8a15631954933fb4 315 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 294 1.1E-50 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AP3564_08585 8034f71296d9e5fd8a15631954933fb4 315 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 232 248 2.1E-37 T 13-10-2018 AP3564_08585 8034f71296d9e5fd8a15631954933fb4 315 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 2.1E-37 T 13-10-2018 AP3564_08585 8034f71296d9e5fd8a15631954933fb4 315 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 2.1E-37 T 13-10-2018 AP3564_08585 8034f71296d9e5fd8a15631954933fb4 315 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 258 280 2.1E-37 T 13-10-2018 AP3564_08585 8034f71296d9e5fd8a15631954933fb4 315 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 105 123 2.1E-37 T 13-10-2018 AP3564_08585 8034f71296d9e5fd8a15631954933fb4 315 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 61 71 3.0E-71 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_08585 8034f71296d9e5fd8a15631954933fb4 315 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 143 167 3.0E-71 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_08585 8034f71296d9e5fd8a15631954933fb4 315 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 195 211 3.0E-71 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_08585 8034f71296d9e5fd8a15631954933fb4 315 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 268 286 3.0E-71 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_08585 8034f71296d9e5fd8a15631954933fb4 315 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 3.0E-71 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_08585 8034f71296d9e5fd8a15631954933fb4 315 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 41 56 3.0E-71 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_08585 8034f71296d9e5fd8a15631954933fb4 315 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 106 114 3.0E-71 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_08585 8034f71296d9e5fd8a15631954933fb4 315 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 128 140 3.0E-71 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_08585 8034f71296d9e5fd8a15631954933fb4 315 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 234 255 3.0E-71 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_08585 8034f71296d9e5fd8a15631954933fb4 315 SUPERFAMILY SSF51905 4 304 4.82E-57 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_08585 8034f71296d9e5fd8a15631954933fb4 315 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 135 155 - T 13-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 AP3564_08585 8034f71296d9e5fd8a15631954933fb4 315 Gene3D G3DSA:3.50.50.60 8 301 5.6E-119 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_08585 8034f71296d9e5fd8a15631954933fb4 315 Gene3D G3DSA:3.50.50.60 117 240 5.6E-119 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_08585 8034f71296d9e5fd8a15631954933fb4 315 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 7 305 8.8E-123 T 13-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 AP3564_08080 86b36c119ead8e5f565b69c086fb5987 501 SUPERFAMILY SSF52540 254 489 2.4E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_08080 86b36c119ead8e5f565b69c086fb5987 501 ProSitePatterns PS00211 ABC transporters family signature. 401 415 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_08080 86b36c119ead8e5f565b69c086fb5987 501 Pfam PF00005 ABC transporter 21 172 5.2E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_08080 86b36c119ead8e5f565b69c086fb5987 501 Gene3D G3DSA:3.40.50.300 1 241 1.1E-52 T 13-10-2018 AP3564_08080 86b36c119ead8e5f565b69c086fb5987 501 SUPERFAMILY SSF52540 5 223 1.15E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_08080 86b36c119ead8e5f565b69c086fb5987 501 Gene3D G3DSA:3.40.50.300 242 499 2.2E-46 T 13-10-2018 AP3564_08080 86b36c119ead8e5f565b69c086fb5987 501 SMART SM00382 282 477 4.7E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_08080 86b36c119ead8e5f565b69c086fb5987 501 SMART SM00382 30 220 2.3E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_08080 86b36c119ead8e5f565b69c086fb5987 501 Pfam PF00005 ABC transporter 273 428 7.0E-23 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_11355 a447ec3584867014bb6448c070a26e02 138 PRINTS PR01438 Universal stress protein signature 116 138 1.7E-21 T 13-10-2018 IPR006015 Universal stress protein A AP3564_11355 a447ec3584867014bb6448c070a26e02 138 PRINTS PR01438 Universal stress protein signature 2 20 1.7E-21 T 13-10-2018 IPR006015 Universal stress protein A AP3564_11355 a447ec3584867014bb6448c070a26e02 138 PRINTS PR01438 Universal stress protein signature 98 110 1.7E-21 T 13-10-2018 IPR006015 Universal stress protein A AP3564_11355 a447ec3584867014bb6448c070a26e02 138 Pfam PF00582 Universal stress protein family 1 138 1.2E-33 T 13-10-2018 IPR006016 UspA AP3564_11355 a447ec3584867014bb6448c070a26e02 138 SUPERFAMILY SSF52402 1 138 7.91E-38 T 13-10-2018 AP3564_11355 a447ec3584867014bb6448c070a26e02 138 PIRSF PIRSF006276 1 138 1.5E-18 T 13-10-2018 IPR006015 Universal stress protein A AP3564_11355 a447ec3584867014bb6448c070a26e02 138 Gene3D G3DSA:3.40.50.620 1 138 1.3E-38 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AP3564_11895 cd22ef4449bacea27e1bbbdbd0e28eb1 313 SMART SM00448 173 295 3.6E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_11895 cd22ef4449bacea27e1bbbdbd0e28eb1 313 SUPERFAMILY SSF52172 171 299 2.13E-26 T 13-10-2018 IPR011006 CheY-like superfamily AP3564_11895 cd22ef4449bacea27e1bbbdbd0e28eb1 313 PIRSF PIRSF002867 1 303 1.6E-104 T 13-10-2018 IPR024181 Chemotaxis response regulator CheV AP3564_11895 cd22ef4449bacea27e1bbbdbd0e28eb1 313 Gene3D G3DSA:2.30.30.40 18 142 4.9E-35 T 13-10-2018 AP3564_11895 cd22ef4449bacea27e1bbbdbd0e28eb1 313 Pfam PF00072 Response regulator receiver domain 175 295 8.7E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_11895 cd22ef4449bacea27e1bbbdbd0e28eb1 313 Gene3D G3DSA:2.40.50.180 33 148 4.9E-35 T 13-10-2018 AP3564_11895 cd22ef4449bacea27e1bbbdbd0e28eb1 313 Pfam PF01584 CheW-like domain 16 149 1.7E-35 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AP3564_11895 cd22ef4449bacea27e1bbbdbd0e28eb1 313 SUPERFAMILY SSF50341 6 149 4.71E-36 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 AP3564_11895 cd22ef4449bacea27e1bbbdbd0e28eb1 313 Gene3D G3DSA:3.40.50.2300 167 313 2.1E-29 T 13-10-2018 AP3564_11895 cd22ef4449bacea27e1bbbdbd0e28eb1 313 SMART SM00260 12 148 2.9E-32 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AP3564_06695 dfa602e54974b1a711c9f8bc57e6604c 458 Gene3D G3DSA:3.40.190.10 56 404 1.1E-133 T 13-10-2018 AP3564_06695 dfa602e54974b1a711c9f8bc57e6604c 458 SUPERFAMILY SSF53850 52 446 1.68E-88 T 13-10-2018 AP3564_06695 dfa602e54974b1a711c9f8bc57e6604c 458 Gene3D G3DSA:3.40.190.10 168 443 1.1E-133 T 13-10-2018 AP3564_06695 dfa602e54974b1a711c9f8bc57e6604c 458 Pfam PF13416 Bacterial extracellular solute-binding protein 70 390 1.6E-56 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein AP3564_06695 dfa602e54974b1a711c9f8bc57e6604c 458 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 163 180 - T 13-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 AP3564_09815 cd0dc9c06e9794a91ab2699cb573f7e1 1167 TIGRFAM TIGR02773 addB_Gpos: helicase-exonuclease AddAB, AddB subunit 1 1164 0.0 T 13-10-2018 IPR014140 DNA helicase subunit AddB GO:0000724|GO:0016788 AP3564_09815 cd0dc9c06e9794a91ab2699cb573f7e1 1167 Gene3D G3DSA:3.40.50.300 1 135 2.2E-32 T 13-10-2018 AP3564_09815 cd0dc9c06e9794a91ab2699cb573f7e1 1167 Pfam PF13361 UvrD-like helicase C-terminal domain 309 671 1.4E-8 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AP3564_09815 cd0dc9c06e9794a91ab2699cb573f7e1 1167 Pfam PF12705 PD-(D/E)XK nuclease superfamily 793 1133 1.4E-58 T 13-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type AP3564_09815 cd0dc9c06e9794a91ab2699cb573f7e1 1167 SUPERFAMILY SSF52540 309 750 3.9E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_09815 cd0dc9c06e9794a91ab2699cb573f7e1 1167 SUPERFAMILY SSF52540 5 234 1.4E-6 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_09815 cd0dc9c06e9794a91ab2699cb573f7e1 1167 Gene3D G3DSA:3.40.50.300 281 429 2.5E-28 T 13-10-2018 AP3564_09815 cd0dc9c06e9794a91ab2699cb573f7e1 1167 Gene3D G3DSA:3.40.50.300 562 701 4.4E-45 T 13-10-2018 AP3564_09815 cd0dc9c06e9794a91ab2699cb573f7e1 1167 Hamap MF_01452 ATP-dependent helicase/deoxyribonuclease subunit B [addB]. 1 1164 62.178 T 13-10-2018 IPR014140 DNA helicase subunit AddB GO:0000724|GO:0016788 AP3564_14485 aedeb8b5b4524b023b6f7d77de3bdccb 232 Gene3D G3DSA:1.10.10.10 131 232 1.5E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_14485 aedeb8b5b4524b023b6f7d77de3bdccb 232 SMART SM00448 4 113 3.2E-41 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_14485 aedeb8b5b4524b023b6f7d77de3bdccb 232 SUPERFAMILY SSF52172 2 177 3.27E-40 T 13-10-2018 IPR011006 CheY-like superfamily AP3564_14485 aedeb8b5b4524b023b6f7d77de3bdccb 232 SMART SM00862 149 225 8.9E-18 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AP3564_14485 aedeb8b5b4524b023b6f7d77de3bdccb 232 Gene3D G3DSA:3.40.50.2300 1 130 7.5E-38 T 13-10-2018 AP3564_14485 aedeb8b5b4524b023b6f7d77de3bdccb 232 Pfam PF00072 Response regulator receiver domain 6 113 3.1E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_14485 aedeb8b5b4524b023b6f7d77de3bdccb 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 224 6.1E-21 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AP3564_08060 afd2602f25027e2c0922d4fec9a4b025 256 Pfam PF00455 DeoR C terminal sensor domain 76 233 5.6E-55 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain AP3564_08060 afd2602f25027e2c0922d4fec9a4b025 256 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.9E-10 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AP3564_08060 afd2602f25027e2c0922d4fec9a4b025 256 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.9E-10 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AP3564_08060 afd2602f25027e2c0922d4fec9a4b025 256 SMART SM00420 6 58 5.5E-21 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AP3564_08060 afd2602f25027e2c0922d4fec9a4b025 256 SUPERFAMILY SSF100950 75 234 1.05E-35 T 13-10-2018 IPR037171 NagB/RpiA transferase-like AP3564_08060 afd2602f25027e2c0922d4fec9a4b025 256 SMART SM01134 74 234 1.5E-73 T 13-10-2018 AP3564_08060 afd2602f25027e2c0922d4fec9a4b025 256 SUPERFAMILY SSF46785 5 66 2.69E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_08060 afd2602f25027e2c0922d4fec9a4b025 256 Gene3D G3DSA:1.10.10.10 2 56 1.6E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_08060 afd2602f25027e2c0922d4fec9a4b025 256 Pfam PF08220 DeoR-like helix-turn-helix domain 6 61 1.9E-17 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AP3564_08060 afd2602f25027e2c0922d4fec9a4b025 256 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AP3564_07340 14334531b265f0b5dbd3d57904e774cc 311 Pfam PF00892 EamA-like transporter family 149 288 7.3E-20 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AP3564_07340 14334531b265f0b5dbd3d57904e774cc 311 Pfam PF00892 EamA-like transporter family 8 134 1.8E-11 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AP3564_07340 14334531b265f0b5dbd3d57904e774cc 311 SUPERFAMILY SSF103481 37 137 4.84E-12 T 13-10-2018 AP3564_07340 14334531b265f0b5dbd3d57904e774cc 311 SUPERFAMILY SSF103481 187 290 6.28E-13 T 13-10-2018 AP3564_07835 367fff2ce43ce8d1b573613dfa72d31f 530 SMART SM00382 244 389 8.9E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_07835 367fff2ce43ce8d1b573613dfa72d31f 530 Pfam PF00158 Sigma-54 interaction domain 234 390 4.2E-64 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AP3564_07835 367fff2ce43ce8d1b573613dfa72d31f 530 SUPERFAMILY SSF52540 234 468 6.05E-67 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_07835 367fff2ce43ce8d1b573613dfa72d31f 530 Pfam PF02954 Bacterial regulatory protein, Fis family 485 524 2.8E-7 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AP3564_07835 367fff2ce43ce8d1b573613dfa72d31f 530 Gene3D G3DSA:1.10.8.60 397 467 1.0E-22 T 13-10-2018 AP3564_07835 367fff2ce43ce8d1b573613dfa72d31f 530 Pfam PF13426 PAS domain 96 192 8.7E-11 T 13-10-2018 IPR000014 PAS domain AP3564_07835 367fff2ce43ce8d1b573613dfa72d31f 530 Gene3D G3DSA:1.10.10.60 468 529 3.2E-12 T 13-10-2018 AP3564_07835 367fff2ce43ce8d1b573613dfa72d31f 530 SUPERFAMILY SSF55785 86 186 1.1E-14 T 13-10-2018 IPR035965 PAS domain superfamily AP3564_07835 367fff2ce43ce8d1b573613dfa72d31f 530 SMART SM00091 85 153 1.2E-5 T 13-10-2018 IPR000014 PAS domain AP3564_07835 367fff2ce43ce8d1b573613dfa72d31f 530 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 88 200 9.1E-14 T 13-10-2018 IPR000014 PAS domain AP3564_07835 367fff2ce43ce8d1b573613dfa72d31f 530 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 311 326 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AP3564_07835 367fff2ce43ce8d1b573613dfa72d31f 530 SUPERFAMILY SSF46689 474 526 2.73E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_07835 367fff2ce43ce8d1b573613dfa72d31f 530 Gene3D G3DSA:3.40.50.300 221 396 6.2E-59 T 13-10-2018 AP3564_07835 367fff2ce43ce8d1b573613dfa72d31f 530 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 248 261 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AP3564_07835 367fff2ce43ce8d1b573613dfa72d31f 530 Gene3D G3DSA:3.30.450.20 82 191 9.0E-19 T 13-10-2018 AP3564_07835 367fff2ce43ce8d1b573613dfa72d31f 530 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 437 446 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site AP3564_08855 4bbd6dc4df983074fe323a6339148db3 330 Gene3D G3DSA:3.40.50.1980 150 330 4.8E-64 T 13-10-2018 AP3564_08855 4bbd6dc4df983074fe323a6339148db3 330 Pfam PF01497 Periplasmic binding protein 63 304 7.7E-34 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain AP3564_08855 4bbd6dc4df983074fe323a6339148db3 330 Gene3D G3DSA:3.40.50.1980 44 149 5.2E-36 T 13-10-2018 AP3564_08855 4bbd6dc4df983074fe323a6339148db3 330 SUPERFAMILY SSF53807 46 324 2.94E-72 T 13-10-2018 AP3564_01700 06fc6265a2a01b8db3ffde22c03d12a4 235 SUPERFAMILY SSF52743 1 229 2.75E-44 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 AP3564_01700 06fc6265a2a01b8db3ffde22c03d12a4 235 Gene3D G3DSA:3.40.50.200 1 234 2.3E-47 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 AP3564_01700 06fc6265a2a01b8db3ffde22c03d12a4 235 Pfam PF00082 Subtilase family 16 215 3.8E-29 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AP3564_01700 06fc6265a2a01b8db3ffde22c03d12a4 235 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 29 39 - T 13-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site AP3564_00760 7d7b0e6f7b22ab105892e638378e4fab 469 SUPERFAMILY SSF56235 12 234 8.06E-67 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AP3564_00760 7d7b0e6f7b22ab105892e638378e4fab 469 Pfam PF00156 Phosphoribosyl transferase domain 280 380 3.2E-7 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AP3564_00760 7d7b0e6f7b22ab105892e638378e4fab 469 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 12 455 2.3E-169 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 AP3564_00760 7d7b0e6f7b22ab105892e638378e4fab 469 SUPERFAMILY SSF53271 245 464 4.2E-76 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like AP3564_00760 7d7b0e6f7b22ab105892e638378e4fab 469 Pfam PF13522 Glutamine amidotransferase domain 73 203 1.6E-21 T 13-10-2018 AP3564_00760 7d7b0e6f7b22ab105892e638378e4fab 469 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 11 454 47.443 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 AP3564_00760 7d7b0e6f7b22ab105892e638378e4fab 469 Gene3D G3DSA:3.40.50.2020 269 433 4.2E-169 T 13-10-2018 AP3564_00760 7d7b0e6f7b22ab105892e638378e4fab 469 Gene3D G3DSA:3.60.20.10 12 456 4.2E-169 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AP3564_00760 7d7b0e6f7b22ab105892e638378e4fab 469 PIRSF PIRSF000485 8 468 5.6E-186 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 AP3564_02090 16b3d7c64a1779d0f4d41e2dc6a1b7fa 302 SUPERFAMILY SSF52743 147 292 1.09E-25 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 AP3564_02090 16b3d7c64a1779d0f4d41e2dc6a1b7fa 302 Pfam PF00082 Subtilase family 168 270 1.2E-10 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AP3564_02090 16b3d7c64a1779d0f4d41e2dc6a1b7fa 302 PRINTS PR00723 Subtilisin serine protease family (S8) signature 167 186 1.1E-5 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related AP3564_02090 16b3d7c64a1779d0f4d41e2dc6a1b7fa 302 PRINTS PR00723 Subtilisin serine protease family (S8) signature 207 220 1.1E-5 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related AP3564_02090 16b3d7c64a1779d0f4d41e2dc6a1b7fa 302 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 172 183 - T 13-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site AP3564_02090 16b3d7c64a1779d0f4d41e2dc6a1b7fa 302 Gene3D G3DSA:3.40.50.200 134 295 5.7E-32 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 AP3564_07465 7149e23c2b462f44af67fa00978f3700 175 PIRSF PIRSF038321 1 175 7.4E-81 T 13-10-2018 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor GO:0009401|GO:0016021 AP3564_07465 7149e23c2b462f44af67fa00978f3700 175 TIGRFAM TIGR00821 EII-GUT: PTS system, glucitol/sorbitol-specific, IIC component 3 172 2.1E-55 T 13-10-2018 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor GO:0009401|GO:0016021 AP3564_07465 7149e23c2b462f44af67fa00978f3700 175 Pfam PF03608 PTS system enzyme II sorbitol-specific factor 4 170 1.8E-77 T 13-10-2018 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor GO:0009401|GO:0016021 AP3564_12970 fa189dfa1b08689659f7b09585d37748 279 Pfam PF02557 D-alanyl-D-alanine carboxypeptidase 127 256 3.7E-45 T 13-10-2018 IPR003709 Peptidase M15B GO:0006508|GO:0008233 AP3564_12970 fa189dfa1b08689659f7b09585d37748 279 Gene3D G3DSA:3.30.1380.10 63 279 1.4E-84 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AP3564_12970 fa189dfa1b08689659f7b09585d37748 279 SUPERFAMILY SSF55166 114 264 2.56E-37 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AP3564_19505 1fa514df82f71cd03668d91fa25c2181 266 Gene3D G3DSA:3.40.50.10330 35 266 2.9E-75 T 13-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 AP3564_19505 1fa514df82f71cd03668d91fa25c2181 266 Gene3D G3DSA:2.60.200.30 108 244 2.9E-75 T 13-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 AP3564_19505 1fa514df82f71cd03668d91fa25c2181 266 Pfam PF01513 ATP-NAD kinase 40 251 2.5E-16 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 AP3564_19505 1fa514df82f71cd03668d91fa25c2181 266 SUPERFAMILY SSF111331 23 265 1.16E-57 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily AP3564_19505 1fa514df82f71cd03668d91fa25c2181 266 Hamap MF_00361 NAD kinase [nadK]. 5 266 20.725 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 AP3564_17500 6fe4fb0476360cc427874b16146e89b0 335 SUPERFAMILY SSF53901 57 312 2.22E-16 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AP3564_17500 6fe4fb0476360cc427874b16146e89b0 335 TIGRFAM TIGR02845 spore_V_AD: stage V sporulation protein AD 6 332 3.2E-155 T 13-10-2018 IPR010894 Stage V sporulation AD AP3564_17500 6fe4fb0476360cc427874b16146e89b0 335 Gene3D G3DSA:3.40.47.40 1 335 2.1E-150 T 13-10-2018 IPR038369 Stage V sporulation AD superfamily AP3564_17500 6fe4fb0476360cc427874b16146e89b0 335 PIRSF PIRSF011570 1 335 3.8E-161 T 13-10-2018 IPR010894 Stage V sporulation AD AP3564_17500 6fe4fb0476360cc427874b16146e89b0 335 Pfam PF07451 Stage V sporulation protein AD (SpoVAD) 5 332 7.0E-150 T 13-10-2018 IPR010894 Stage V sporulation AD AP3564_04100 a542b25c388915f5a45b674e7d6722e6 277 SUPERFAMILY SSF55681 3 262 3.31E-70 T 13-10-2018 AP3564_04100 a542b25c388915f5a45b674e7d6722e6 277 Gene3D G3DSA:3.30.930.10 2 276 3.8E-81 T 13-10-2018 AP3564_04100 a542b25c388915f5a45b674e7d6722e6 277 Pfam PF03099 Biotin/lipoate A/B protein ligase family 70 180 4.8E-14 T 13-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 AP3564_04100 a542b25c388915f5a45b674e7d6722e6 277 Hamap MF_02119 Lipoyl-[GcvH]:protein N-lipoyltransferase [lipL]. 3 275 49.415 T 13-10-2018 IPR024897 Octanoyltransferase LipL GO:0009107|GO:0009249|GO:0016415 MetaCyc: PWY-6987 AP3564_05580 659c9fc8d799e8207e1c68d535d848cf 362 Gene3D G3DSA:3.30.590.10 9 262 2.8E-75 T 13-10-2018 AP3564_05580 659c9fc8d799e8207e1c68d535d848cf 362 Hamap MF_00602 Protein-arginine kinase [mcsB]. 13 351 39.155 T 13-10-2018 IPR023660 Protein arginine kinase GO:0016775 AP3564_05580 659c9fc8d799e8207e1c68d535d848cf 362 Pfam PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain 57 254 2.6E-74 T 13-10-2018 IPR022414 ATP:guanido phosphotransferase, catalytic domain GO:0016301|GO:0016772 Reactome: R-HSA-71288 AP3564_05580 659c9fc8d799e8207e1c68d535d848cf 362 SUPERFAMILY SSF55931 4 269 5.33E-90 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 AP3564_05580 659c9fc8d799e8207e1c68d535d848cf 362 ProSitePatterns PS00112 Phosphagen kinase active site signature. 168 174 - T 13-10-2018 IPR022415 ATP:guanido phosphotransferase active site GO:0016301|GO:0016772 Reactome: R-HSA-71288 AP3564_05840 f1e431fb4a43a7849c1223471e697a6f 103 Pfam PF00467 KOW motif 11 38 4.9E-5 T 13-10-2018 IPR005824 KOW AP3564_05840 f1e431fb4a43a7849c1223471e697a6f 103 Gene3D G3DSA:2.30.30.30 8 76 5.0E-10 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 AP3564_05840 f1e431fb4a43a7849c1223471e697a6f 103 SUPERFAMILY SSF50104 8 73 8.65E-14 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily AP3564_13955 2024c455b7004ff14bf788d3c213285f 375 SUPERFAMILY SSF56281 126 370 5.37E-48 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AP3564_13955 2024c455b7004ff14bf788d3c213285f 375 SMART SM00849 132 294 6.0E-32 T 13-10-2018 IPR001279 Metallo-beta-lactamase AP3564_13955 2024c455b7004ff14bf788d3c213285f 375 Gene3D G3DSA:3.40.250.10 3 115 3.4E-22 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily AP3564_13955 2024c455b7004ff14bf788d3c213285f 375 Pfam PF00581 Rhodanese-like domain 7 107 6.7E-13 T 13-10-2018 IPR001763 Rhodanese-like domain AP3564_13955 2024c455b7004ff14bf788d3c213285f 375 SUPERFAMILY SSF52821 3 112 2.36E-22 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily AP3564_13955 2024c455b7004ff14bf788d3c213285f 375 Pfam PF00753 Metallo-beta-lactamase superfamily 132 276 5.0E-14 T 13-10-2018 IPR001279 Metallo-beta-lactamase AP3564_13955 2024c455b7004ff14bf788d3c213285f 375 Gene3D G3DSA:3.60.15.10 122 359 4.4E-56 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AP3564_13955 2024c455b7004ff14bf788d3c213285f 375 SMART SM00450 6 111 3.7E-16 T 13-10-2018 IPR001763 Rhodanese-like domain AP3564_07895 6128d578a5dce21804fc73852b26a0df 264 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_07895 6128d578a5dce21804fc73852b26a0df 264 Pfam PF00005 ABC transporter 37 176 4.5E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_07895 6128d578a5dce21804fc73852b26a0df 264 SUPERFAMILY SSF52540 18 233 6.55E-72 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_07895 6128d578a5dce21804fc73852b26a0df 264 SMART SM00382 46 226 9.5E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_07895 6128d578a5dce21804fc73852b26a0df 264 Gene3D G3DSA:3.40.50.300 16 257 4.0E-72 T 13-10-2018 AP3564_18340 576e8472614ce7672057b30a13560af1 296 Gene3D G3DSA:1.20.58.180 205 285 5.9E-36 T 13-10-2018 AP3564_18340 576e8472614ce7672057b30a13560af1 296 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 76 96 1.8E-66 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AP3564_18340 576e8472614ce7672057b30a13560af1 296 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 133 153 1.8E-66 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AP3564_18340 576e8472614ce7672057b30a13560af1 296 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 107 131 1.8E-66 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AP3564_18340 576e8472614ce7672057b30a13560af1 296 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 55 70 1.8E-66 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AP3564_18340 576e8472614ce7672057b30a13560af1 296 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 241 257 1.8E-66 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AP3564_18340 576e8472614ce7672057b30a13560af1 296 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 156 171 1.8E-66 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AP3564_18340 576e8472614ce7672057b30a13560af1 296 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 3 280 8.1E-149 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AP3564_18340 576e8472614ce7672057b30a13560af1 296 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 1 288 2.3E-165 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AP3564_18340 576e8472614ce7672057b30a13560af1 296 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 1 281 58.179 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AP3564_18340 576e8472614ce7672057b30a13560af1 296 Gene3D G3DSA:3.30.930.10 1 204 1.3E-108 T 13-10-2018 AP3564_18340 576e8472614ce7672057b30a13560af1 296 SUPERFAMILY SSF55681 1 280 2.15E-132 T 13-10-2018 AP3564_01630 e4209b5c465a7ab14d9b843afd1a0985 215 Hamap MF_01677 Methylthioribulose-1-phosphate dehydratase [mtnB]. 1 205 97.994 T 13-10-2018 IPR017714 Methylthioribulose-1-phosphate dehydratase GO:0005737|GO:0019509|GO:0046872 KEGG: 00270+4.2.1.109|MetaCyc: PWY-4361|Reactome: R-HSA-1237112 AP3564_01630 e4209b5c465a7ab14d9b843afd1a0985 215 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 10 197 2.5E-36 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal AP3564_01630 e4209b5c465a7ab14d9b843afd1a0985 215 TIGRFAM TIGR03328 salvage_mtnB: methylthioribulose-1-phosphate dehydratase 11 200 1.7E-61 T 13-10-2018 IPR017714 Methylthioribulose-1-phosphate dehydratase GO:0005737|GO:0019509|GO:0046872 KEGG: 00270+4.2.1.109|MetaCyc: PWY-4361|Reactome: R-HSA-1237112 AP3564_01630 e4209b5c465a7ab14d9b843afd1a0985 215 Gene3D G3DSA:3.40.225.10 6 208 1.4E-46 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily AP3564_01630 e4209b5c465a7ab14d9b843afd1a0985 215 SMART SM01007 9 197 1.6E-37 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal AP3564_01630 e4209b5c465a7ab14d9b843afd1a0985 215 SUPERFAMILY SSF53639 8 203 6.47E-41 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily AP3564_17655 a9c24cbba8d88657060d5f87602b1bdb 278 SUPERFAMILY SSF48179 161 268 1.53E-33 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AP3564_17655 a9c24cbba8d88657060d5f87602b1bdb 278 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 2 266 25.335 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AP3564_17655 a9c24cbba8d88657060d5f87602b1bdb 278 Gene3D G3DSA:3.40.50.720 1 163 5.1E-47 T 13-10-2018 AP3564_17655 a9c24cbba8d88657060d5f87602b1bdb 278 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 3 99 3.1E-21 T 13-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal AP3564_17655 a9c24cbba8d88657060d5f87602b1bdb 278 Gene3D G3DSA:1.10.3730.10 164 270 2.4E-39 T 13-10-2018 AP3564_17655 a9c24cbba8d88657060d5f87602b1bdb 278 PIRSF PIRSF000193 1 269 1.8E-77 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AP3564_17655 a9c24cbba8d88657060d5f87602b1bdb 278 SUPERFAMILY SSF51735 3 160 4.25E-28 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_17655 a9c24cbba8d88657060d5f87602b1bdb 278 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 5 266 1.7E-83 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AP3564_17655 a9c24cbba8d88657060d5f87602b1bdb 278 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 162 266 3.5E-35 T 13-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AP3564_11165 a675d129dfca493a545a02cfbd7a7f04 250 Pfam PF01614 Bacterial transcriptional regulator 123 242 2.3E-23 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal AP3564_11165 a675d129dfca493a545a02cfbd7a7f04 250 SUPERFAMILY SSF46785 9 77 7.61E-13 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_11165 a675d129dfca493a545a02cfbd7a7f04 250 Gene3D G3DSA:1.10.10.10 2 77 3.4E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_11165 a675d129dfca493a545a02cfbd7a7f04 250 Pfam PF09339 IclR helix-turn-helix domain 19 56 3.5E-7 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AP3564_11165 a675d129dfca493a545a02cfbd7a7f04 250 Gene3D G3DSA:3.30.450.40 78 248 1.3E-48 T 13-10-2018 IPR029016 GAF-like domain superfamily AP3564_11165 a675d129dfca493a545a02cfbd7a7f04 250 SMART SM00346 2 94 1.5E-13 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AP3564_11165 a675d129dfca493a545a02cfbd7a7f04 250 SUPERFAMILY SSF55781 64 247 2.94E-44 T 13-10-2018 AP3564_07140 727cafe3c2a0a2a6b9ed5a783a5de3c5 339 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 125 3.4E-26 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AP3564_07140 727cafe3c2a0a2a6b9ed5a783a5de3c5 339 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 137 244 4.2E-14 T 13-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 AP3564_07140 727cafe3c2a0a2a6b9ed5a783a5de3c5 339 Gene3D G3DSA:3.30.360.10 126 320 1.3E-102 T 13-10-2018 AP3564_07140 727cafe3c2a0a2a6b9ed5a783a5de3c5 339 SUPERFAMILY SSF55347 130 301 8.24E-32 T 13-10-2018 AP3564_07140 727cafe3c2a0a2a6b9ed5a783a5de3c5 339 SUPERFAMILY SSF51735 2 153 1.89E-42 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_07140 727cafe3c2a0a2a6b9ed5a783a5de3c5 339 Gene3D G3DSA:3.40.50.720 5 306 1.3E-102 T 13-10-2018 AP3564_07140 727cafe3c2a0a2a6b9ed5a783a5de3c5 339 TIGRFAM TIGR04380 myo_inos_iolG: inositol 2-dehydrogenase 5 331 1.3E-107 T 13-10-2018 IPR030827 Inositol 2-dehydrogenase AP3564_05805 9815edca3c1ea5a806f2054ce3b38405 120 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 7 120 6.7E-48 T 13-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05805 9815edca3c1ea5a806f2054ce3b38405 120 Gene3D G3DSA:3.30.420.100 6 120 2.1E-49 T 13-10-2018 AP3564_05805 9815edca3c1ea5a806f2054ce3b38405 120 SUPERFAMILY SSF53137 7 118 9.91E-56 T 13-10-2018 AP3564_05805 9815edca3c1ea5a806f2054ce3b38405 120 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 6 120 30.742 T 13-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05805 9815edca3c1ea5a806f2054ce3b38405 120 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 6 120 8.6E-53 T 13-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_06580 41f8557083fbf95d9673e3eb42808eb8 259 Pfam PF09339 IclR helix-turn-helix domain 12 62 3.3E-10 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AP3564_06580 41f8557083fbf95d9673e3eb42808eb8 259 SMART SM00346 10 100 4.5E-17 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AP3564_06580 41f8557083fbf95d9673e3eb42808eb8 259 SUPERFAMILY SSF55781 68 256 9.81E-54 T 13-10-2018 AP3564_06580 41f8557083fbf95d9673e3eb42808eb8 259 Gene3D G3DSA:1.10.10.10 8 81 2.8E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_06580 41f8557083fbf95d9673e3eb42808eb8 259 Pfam PF01614 Bacterial transcriptional regulator 129 251 4.0E-39 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal AP3564_06580 41f8557083fbf95d9673e3eb42808eb8 259 Gene3D G3DSA:3.30.450.40 82 257 6.2E-62 T 13-10-2018 IPR029016 GAF-like domain superfamily AP3564_06580 41f8557083fbf95d9673e3eb42808eb8 259 SUPERFAMILY SSF46785 11 83 1.93E-13 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_14435 ed232222a65a3cc7c3aee9408de37b42 126 Gene3D G3DSA:1.10.10.10 10 126 2.4E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_14435 ed232222a65a3cc7c3aee9408de37b42 126 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 76 8.0E-14 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_14435 ed232222a65a3cc7c3aee9408de37b42 126 SMART SM00345 17 76 4.6E-11 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_14435 ed232222a65a3cc7c3aee9408de37b42 126 SUPERFAMILY SSF46785 6 85 1.32E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_18335 422fe4dba8003e6ec2189d7e267c3833 687 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 3 684 27.185 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AP3564_18335 422fe4dba8003e6ec2189d7e267c3833 687 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 1 685 4.6E-255 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AP3564_18335 422fe4dba8003e6ec2189d7e267c3833 687 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 6 549 5.0E-212 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AP3564_18335 422fe4dba8003e6ec2189d7e267c3833 687 SUPERFAMILY SSF109604 337 492 1.02E-17 T 13-10-2018 AP3564_18335 422fe4dba8003e6ec2189d7e267c3833 687 Pfam PF05746 DALR anticodon binding domain 581 675 2.9E-5 T 13-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 AP3564_18335 422fe4dba8003e6ec2189d7e267c3833 687 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 7 20 4.6E-38 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AP3564_18335 422fe4dba8003e6ec2189d7e267c3833 687 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 394 413 4.6E-38 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AP3564_18335 422fe4dba8003e6ec2189d7e267c3833 687 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 50 62 4.6E-38 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AP3564_18335 422fe4dba8003e6ec2189d7e267c3833 687 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 243 258 4.6E-38 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AP3564_18335 422fe4dba8003e6ec2189d7e267c3833 687 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 315 331 4.6E-38 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AP3564_07695 886d2ecf5e567e20689dd9df720f881f 290 SUPERFAMILY SSF64518 1 290 6.54E-62 T 13-10-2018 AP3564_07695 886d2ecf5e567e20689dd9df720f881f 290 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 2 181 1.9E-55 T 13-10-2018 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 AP3564_07695 886d2ecf5e567e20689dd9df720f881f 290 Gene3D G3DSA:1.20.1330.10 40 236 3.9E-49 T 13-10-2018 AP3564_07695 886d2ecf5e567e20689dd9df720f881f 290 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 140 4.5E-16 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 AP3564_07695 886d2ecf5e567e20689dd9df720f881f 290 Pfam PF00700 Bacterial flagellin C-terminal helical region 208 289 1.2E-6 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 AP3564_04610 f066c4b6ffc327d30d7ee78d5e2f20fc 420 Gene3D G3DSA:3.90.220.20 4 408 3.4E-75 T 13-10-2018 AP3564_04610 f066c4b6ffc327d30d7ee78d5e2f20fc 420 SUPERFAMILY SSF116734 3 194 9.48E-37 T 13-10-2018 AP3564_04610 f066c4b6ffc327d30d7ee78d5e2f20fc 420 Gene3D G3DSA:3.90.220.20 221 361 3.4E-75 T 13-10-2018 AP3564_04610 f066c4b6ffc327d30d7ee78d5e2f20fc 420 Gene3D G3DSA:1.10.287.1120 146 404 3.4E-75 T 13-10-2018 AP3564_04610 f066c4b6ffc327d30d7ee78d5e2f20fc 420 Pfam PF01420 Type I restriction modification DNA specificity domain 2 178 9.3E-17 T 13-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 AP3564_04610 f066c4b6ffc327d30d7ee78d5e2f20fc 420 Pfam PF01420 Type I restriction modification DNA specificity domain 217 390 4.9E-25 T 13-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 AP3564_04610 f066c4b6ffc327d30d7ee78d5e2f20fc 420 SUPERFAMILY SSF116734 208 410 4.09E-42 T 13-10-2018 AP3564_16980 7634f9c598408ed9889d01c1826f6ae1 430 Pfam PF00152 tRNA synthetases class II (D, K and N) 111 424 2.7E-84 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_16980 7634f9c598408ed9889d01c1826f6ae1 430 SUPERFAMILY SSF55681 110 424 1.47E-99 T 13-10-2018 AP3564_16980 7634f9c598408ed9889d01c1826f6ae1 430 Gene3D G3DSA:2.40.50.140 2 101 4.8E-25 T 13-10-2018 AP3564_16980 7634f9c598408ed9889d01c1826f6ae1 430 PRINTS PR01042 Aspartyl-tRNA synthetase signature 180 192 1.3E-15 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_16980 7634f9c598408ed9889d01c1826f6ae1 430 PRINTS PR01042 Aspartyl-tRNA synthetase signature 385 399 1.3E-15 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_16980 7634f9c598408ed9889d01c1826f6ae1 430 PRINTS PR01042 Aspartyl-tRNA synthetase signature 196 209 1.3E-15 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_16980 7634f9c598408ed9889d01c1826f6ae1 430 PRINTS PR01042 Aspartyl-tRNA synthetase signature 345 361 1.3E-15 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_16980 7634f9c598408ed9889d01c1826f6ae1 430 Gene3D G3DSA:3.30.930.10 102 430 5.0E-120 T 13-10-2018 AP3564_16980 7634f9c598408ed9889d01c1826f6ae1 430 SUPERFAMILY SSF50249 9 102 4.57E-25 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_16980 7634f9c598408ed9889d01c1826f6ae1 430 Hamap MF_00534 Asparagine--tRNA ligase [asnS]. 1 430 41.899 T 13-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 AP3564_16980 7634f9c598408ed9889d01c1826f6ae1 430 TIGRFAM TIGR00457 asnS: asparagine--tRNA ligase 1 429 3.3E-168 T 13-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 AP3564_16980 7634f9c598408ed9889d01c1826f6ae1 430 Pfam PF01336 OB-fold nucleic acid binding domain 16 95 3.4E-14 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 AP3564_12920 73fcdea7079c18483729511c6abd60a9 332 Gene3D G3DSA:3.20.20.70 16 323 1.6E-113 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_12920 73fcdea7079c18483729511c6abd60a9 332 PIRSF PIRSF001619 2 327 8.3E-128 T 13-10-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AP3564_12920 73fcdea7079c18483729511c6abd60a9 332 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 232 321 1.9E-16 T 13-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AP3564_12920 73fcdea7079c18483729511c6abd60a9 332 SMART SM00729 56 264 3.5E-41 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AP3564_12920 73fcdea7079c18483729511c6abd60a9 332 Pfam PF04055 Radical SAM superfamily 65 221 4.7E-19 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AP3564_12920 73fcdea7079c18483729511c6abd60a9 332 SMART SM00876 232 322 3.3E-35 T 13-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AP3564_12920 73fcdea7079c18483729511c6abd60a9 332 TIGRFAM TIGR00433 bioB: biotin synthase 29 321 1.1E-124 T 13-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AP3564_12920 73fcdea7079c18483729511c6abd60a9 332 Hamap MF_01694 Biotin synthase [bioB]. 16 323 42.834 T 13-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AP3564_12920 73fcdea7079c18483729511c6abd60a9 332 SUPERFAMILY SSF102114 15 322 1.7E-77 T 13-10-2018 AP3564_07975 d623f88d0b3025cff924fcb36d0c624c 412 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 7 401 3.8E-126 T 13-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 AP3564_07975 d623f88d0b3025cff924fcb36d0c624c 412 Gene3D G3DSA:3.40.630.10 14 396 3.6E-139 T 13-10-2018 AP3564_07975 d623f88d0b3025cff924fcb36d0c624c 412 Pfam PF01546 Peptidase family M20/M25/M40 77 399 4.3E-32 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 AP3564_07975 d623f88d0b3025cff924fcb36d0c624c 412 Gene3D G3DSA:3.30.70.360 209 320 3.6E-139 T 13-10-2018 AP3564_07975 d623f88d0b3025cff924fcb36d0c624c 412 PIRSF PIRSF001235 1 406 3.3E-137 T 13-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 AP3564_07975 d623f88d0b3025cff924fcb36d0c624c 412 SUPERFAMILY SSF53187 2 401 1.0E-89 T 13-10-2018 AP3564_07975 d623f88d0b3025cff924fcb36d0c624c 412 SUPERFAMILY SSF55031 209 318 1.5E-19 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain AP3564_14420 959b2c6d8cf567f718eeb91da6e0da7d 525 Pfam PF03050 Transposase IS66 family 178 463 1.8E-101 T 13-10-2018 IPR004291 Transposase, IS66 AP3564_14420 959b2c6d8cf567f718eeb91da6e0da7d 525 Pfam PF13007 Transposase C of IS166 homeodomain 36 105 1.7E-10 T 13-10-2018 IPR024463 Transposase TnpC, homeodomain AP3564_14420 959b2c6d8cf567f718eeb91da6e0da7d 525 Pfam PF13817 IS66 C-terminal element 470 510 1.9E-15 T 13-10-2018 IPR039552 Transposase IS66, C-terminal AP3564_14420 959b2c6d8cf567f718eeb91da6e0da7d 525 Pfam PF13005 zinc-finger binding domain of transposase IS66 113 157 2.8E-12 T 13-10-2018 IPR024474 Zinc-finger binding domain of transposase IS66 AP3564_17775 0040b249379bf0abef955c4331ce255c 411 Pfam PF02817 e3 binding domain 118 151 5.3E-13 T 13-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 AP3564_17775 0040b249379bf0abef955c4331ce255c 411 SUPERFAMILY SSF47005 114 155 9.29E-11 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AP3564_17775 0040b249379bf0abef955c4331ce255c 411 SUPERFAMILY SSF51230 3 92 4.84E-27 T 13-10-2018 IPR011053 Single hybrid motif AP3564_17775 0040b249379bf0abef955c4331ce255c 411 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 179 403 1.9E-79 T 13-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 AP3564_17775 0040b249379bf0abef955c4331ce255c 411 Gene3D G3DSA:2.40.50.100 2 100 6.6E-29 T 13-10-2018 AP3564_17775 0040b249379bf0abef955c4331ce255c 411 Gene3D G3DSA:3.30.559.10 165 411 8.2E-96 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 AP3564_17775 0040b249379bf0abef955c4331ce255c 411 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 28 57 - T 13-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AP3564_17775 0040b249379bf0abef955c4331ce255c 411 SUPERFAMILY SSF52777 179 403 8.9E-80 T 13-10-2018 AP3564_17775 0040b249379bf0abef955c4331ce255c 411 Gene3D G3DSA:4.10.320.10 107 162 9.5E-16 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AP3564_17775 0040b249379bf0abef955c4331ce255c 411 Pfam PF00364 Biotin-requiring enzyme 5 77 2.4E-24 T 13-10-2018 IPR000089 Biotin/lipoyl attachment AP3564_02255 27e4c4ab96260e2ceee48abb034507d7 307 Pfam PF04960 Glutaminase 21 307 2.8E-113 T 13-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 AP3564_02255 27e4c4ab96260e2ceee48abb034507d7 307 TIGRFAM TIGR03814 Gln_ase: glutaminase A 9 307 2.6E-123 T 13-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 AP3564_02255 27e4c4ab96260e2ceee48abb034507d7 307 Gene3D G3DSA:3.40.710.10 3 307 2.7E-113 T 13-10-2018 AP3564_02255 27e4c4ab96260e2ceee48abb034507d7 307 Hamap MF_00313 Glutaminase [glsA]. 3 307 46.078 T 13-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 AP3564_02255 27e4c4ab96260e2ceee48abb034507d7 307 SUPERFAMILY SSF56601 6 307 5.63E-111 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AP3564_05720 0a2a7cc0aa1660204b40cd8445633f18 102 Pfam PF00338 Ribosomal protein S10p/S20e 7 101 4.5E-37 T 13-10-2018 IPR027486 Ribosomal protein S10 domain AP3564_05720 0a2a7cc0aa1660204b40cd8445633f18 102 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 5.9E-20 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05720 0a2a7cc0aa1660204b40cd8445633f18 102 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 5.9E-20 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05720 0a2a7cc0aa1660204b40cd8445633f18 102 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 5.9E-20 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05720 0a2a7cc0aa1660204b40cd8445633f18 102 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 3.2E-47 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05720 0a2a7cc0aa1660204b40cd8445633f18 102 SMART SM01403 7 101 3.7E-61 T 13-10-2018 IPR027486 Ribosomal protein S10 domain AP3564_05720 0a2a7cc0aa1660204b40cd8445633f18 102 SUPERFAMILY SSF54999 5 102 4.45E-39 T 13-10-2018 IPR036838 Ribosomal protein S10 domain superfamily AP3564_05720 0a2a7cc0aa1660204b40cd8445633f18 102 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 28.421 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05720 0a2a7cc0aa1660204b40cd8445633f18 102 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 13-10-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05720 0a2a7cc0aa1660204b40cd8445633f18 102 Gene3D G3DSA:3.30.70.600 1 102 1.1E-38 T 13-10-2018 IPR036838 Ribosomal protein S10 domain superfamily AP3564_10155 8b229561e686fb237d7f0c2f901e12ca 605 Gene3D G3DSA:1.10.1370.20 234 605 8.7E-149 T 13-10-2018 AP3564_10155 8b229561e686fb237d7f0c2f901e12ca 605 SUPERFAMILY SSF55486 62 603 3.37E-141 T 13-10-2018 AP3564_10155 8b229561e686fb237d7f0c2f901e12ca 605 TIGRFAM TIGR00181 pepF: oligoendopeptidase F 13 601 1.8E-219 T 13-10-2018 IPR004438 Peptidase M3B, oligoendopeptidase F GO:0004222|GO:0006508 AP3564_10155 8b229561e686fb237d7f0c2f901e12ca 605 Pfam PF08439 Oligopeptidase F 120 189 2.8E-23 T 13-10-2018 IPR013647 Oligopeptidase F, N-terminal domain AP3564_10155 8b229561e686fb237d7f0c2f901e12ca 605 Gene3D G3DSA:1.20.140.70 30 185 2.9E-54 T 13-10-2018 AP3564_10155 8b229561e686fb237d7f0c2f901e12ca 605 Gene3D G3DSA:1.10.287.830 187 233 4.2E-22 T 13-10-2018 AP3564_10155 8b229561e686fb237d7f0c2f901e12ca 605 Pfam PF01432 Peptidase family M3 210 590 9.3E-83 T 13-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 AP3564_11725 6cafe51c3693d9b8525236f7e12a78c2 145 TIGRFAM TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD 16 111 1.2E-27 T 13-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 AP3564_11725 6cafe51c3693d9b8525236f7e12a78c2 145 Gene3D G3DSA:3.30.479.10 7 141 1.4E-28 T 13-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 AP3564_11725 6cafe51c3693d9b8525236f7e12a78c2 145 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 17 139 3.7E-29 T 13-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 AP3564_11725 6cafe51c3693d9b8525236f7e12a78c2 145 PIRSF PIRSF006113 13 141 8.3E-23 T 13-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 AP3564_11725 6cafe51c3693d9b8525236f7e12a78c2 145 SUPERFAMILY SSF55620 14 140 3.28E-33 T 13-10-2018 AP3564_19320 356464772ed592c00278c39d5bfe27a5 199 Gene3D G3DSA:3.40.50.300 1 197 7.3E-83 T 13-10-2018 AP3564_19320 356464772ed592c00278c39d5bfe27a5 199 SUPERFAMILY SSF52540 1 193 4.11E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_19320 356464772ed592c00278c39d5bfe27a5 199 Pfam PF01121 Dephospho-CoA kinase 3 183 1.3E-64 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 AP3564_19320 356464772ed592c00278c39d5bfe27a5 199 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 4 190 6.7E-67 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 AP3564_19320 356464772ed592c00278c39d5bfe27a5 199 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 2 199 30.128 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 AP3564_11800 a23487497d6be4cce8c7543c9af8084a 319 Gene3D G3DSA:3.40.50.450 3 286 2.7E-119 T 13-10-2018 AP3564_11800 a23487497d6be4cce8c7543c9af8084a 319 PIRSF PIRSF000532 1 319 4.6E-123 T 13-10-2018 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 AP3564_11800 a23487497d6be4cce8c7543c9af8084a 319 Hamap MF_00339 ATP-dependent 6-phosphofructokinase [pfkA]. 1 318 47.966 T 13-10-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 AP3564_11800 a23487497d6be4cce8c7543c9af8084a 319 ProSitePatterns PS00433 Phosphofructokinase signature. 243 261 - T 13-10-2018 IPR015912 Phosphofructokinase, conserved site GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AP3564_11800 a23487497d6be4cce8c7543c9af8084a 319 SUPERFAMILY SSF53784 1 301 1.09E-116 T 13-10-2018 IPR035966 Phosphofructokinase superfamily GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AP3564_11800 a23487497d6be4cce8c7543c9af8084a 319 Pfam PF00365 Phosphofructokinase 3 275 1.1E-112 T 13-10-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AP3564_11800 a23487497d6be4cce8c7543c9af8084a 319 Gene3D G3DSA:3.40.50.460 142 251 2.7E-119 T 13-10-2018 AP3564_11800 a23487497d6be4cce8c7543c9af8084a 319 TIGRFAM TIGR02482 PFKA_ATP: 6-phosphofructokinase 3 299 2.2E-134 T 13-10-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 AP3564_11800 a23487497d6be4cce8c7543c9af8084a 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 138 156 3.4E-87 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AP3564_11800 a23487497d6be4cce8c7543c9af8084a 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 6 25 3.4E-87 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AP3564_11800 a23487497d6be4cce8c7543c9af8084a 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 93 109 3.4E-87 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AP3564_11800 a23487497d6be4cce8c7543c9af8084a 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 176 193 3.4E-87 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AP3564_11800 a23487497d6be4cce8c7543c9af8084a 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 212 224 3.4E-87 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AP3564_11800 a23487497d6be4cce8c7543c9af8084a 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 239 261 3.4E-87 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AP3564_11800 a23487497d6be4cce8c7543c9af8084a 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 120 137 3.4E-87 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AP3564_11800 a23487497d6be4cce8c7543c9af8084a 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 31 44 3.4E-87 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AP3564_11800 a23487497d6be4cce8c7543c9af8084a 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 158 174 3.4E-87 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AP3564_15235 0e43d472cea31938bdb3380042ba7ada 98 SUPERFAMILY SSF81301 7 95 1.13E-13 T 13-10-2018 AP3564_15235 0e43d472cea31938bdb3380042ba7ada 98 Gene3D G3DSA:3.30.460.10 2 97 1.6E-18 T 13-10-2018 AP3564_15235 0e43d472cea31938bdb3380042ba7ada 98 Pfam PF01909 Nucleotidyltransferase domain 13 88 1.2E-8 T 13-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 AP3564_11680 4085f19fc068c92e36da5ad136a0beca 495 Pfam PF00512 His Kinase A (phospho-acceptor) domain 281 341 6.9E-16 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AP3564_11680 4085f19fc068c92e36da5ad136a0beca 495 Pfam PF02743 Cache domain 53 205 1.4E-17 T 13-10-2018 IPR033479 Double Cache domain 1 AP3564_11680 4085f19fc068c92e36da5ad136a0beca 495 SUPERFAMILY SSF55874 346 491 1.44E-40 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_11680 4085f19fc068c92e36da5ad136a0beca 495 SMART SM00388 279 344 1.2E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AP3564_11680 4085f19fc068c92e36da5ad136a0beca 495 Gene3D G3DSA:3.30.450.20 76 169 2.6E-60 T 13-10-2018 AP3564_11680 4085f19fc068c92e36da5ad136a0beca 495 Gene3D G3DSA:1.10.287.130 265 342 2.0E-19 T 13-10-2018 AP3564_11680 4085f19fc068c92e36da5ad136a0beca 495 SMART SM00387 387 493 4.4E-34 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_11680 4085f19fc068c92e36da5ad136a0beca 495 PRINTS PR00344 Bacterial sensor protein C-terminal signature 453 471 1.5E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_11680 4085f19fc068c92e36da5ad136a0beca 495 PRINTS PR00344 Bacterial sensor protein C-terminal signature 442 452 1.5E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_11680 4085f19fc068c92e36da5ad136a0beca 495 PRINTS PR00344 Bacterial sensor protein C-terminal signature 424 438 1.5E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_11680 4085f19fc068c92e36da5ad136a0beca 495 PRINTS PR00344 Bacterial sensor protein C-terminal signature 477 490 1.5E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_11680 4085f19fc068c92e36da5ad136a0beca 495 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 390 492 5.7E-23 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_11680 4085f19fc068c92e36da5ad136a0beca 495 Gene3D G3DSA:3.30.450.20 47 220 2.6E-60 T 13-10-2018 AP3564_11680 4085f19fc068c92e36da5ad136a0beca 495 SUPERFAMILY SSF47384 274 343 5.89E-14 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AP3564_11680 4085f19fc068c92e36da5ad136a0beca 495 Gene3D G3DSA:3.30.565.10 343 495 2.3E-43 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_17755 25506301fab3a80127c723f6ad5b83e6 300 Gene3D G3DSA:3.40.190.290 90 297 9.0E-52 T 13-10-2018 AP3564_17755 25506301fab3a80127c723f6ad5b83e6 300 SUPERFAMILY SSF46785 1 84 1.92E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_17755 25506301fab3a80127c723f6ad5b83e6 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.6E-21 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_17755 25506301fab3a80127c723f6ad5b83e6 300 SUPERFAMILY SSF53850 88 294 1.69E-41 T 13-10-2018 AP3564_17755 25506301fab3a80127c723f6ad5b83e6 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.3E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_17755 25506301fab3a80127c723f6ad5b83e6 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.3E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_17755 25506301fab3a80127c723f6ad5b83e6 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.3E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_17755 25506301fab3a80127c723f6ad5b83e6 300 Pfam PF03466 LysR substrate binding domain 88 292 7.8E-46 T 13-10-2018 IPR005119 LysR, substrate-binding AP3564_17755 25506301fab3a80127c723f6ad5b83e6 300 Gene3D G3DSA:1.10.10.10 1 84 6.0E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_16835 9569e996e843de28d3ae338a42d09b8b 343 Pfam PF14504 CAP-associated N-terminal 56 195 6.5E-45 T 13-10-2018 IPR029410 CAP-associated domain AP3564_16835 9569e996e843de28d3ae338a42d09b8b 343 SUPERFAMILY SSF55797 221 337 9.94E-20 T 13-10-2018 IPR035940 CAP superfamily AP3564_16835 9569e996e843de28d3ae338a42d09b8b 343 Pfam PF00188 Cysteine-rich secretory protein family 227 331 1.5E-15 T 13-10-2018 IPR014044 CAP domain AP3564_16835 9569e996e843de28d3ae338a42d09b8b 343 Gene3D G3DSA:3.40.33.10 23 340 1.0E-99 T 13-10-2018 IPR035940 CAP superfamily AP3564_10190 cff07a3362539ca9f0d63c5523a3c068 264 Hamap MF_00361 NAD kinase [nadK]. 1 262 23.924 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 AP3564_10190 cff07a3362539ca9f0d63c5523a3c068 264 Gene3D G3DSA:3.40.50.10330 16 261 7.0E-99 T 13-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 AP3564_10190 cff07a3362539ca9f0d63c5523a3c068 264 Pfam PF01513 ATP-NAD kinase 33 185 2.4E-24 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 AP3564_10190 cff07a3362539ca9f0d63c5523a3c068 264 SUPERFAMILY SSF111331 14 260 1.02E-66 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily AP3564_10190 cff07a3362539ca9f0d63c5523a3c068 264 Gene3D G3DSA:2.60.200.30 102 239 7.0E-99 T 13-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 AP3564_14515 08b80481b1555f68e7f05410b697b093 70 Gene3D G3DSA:3.90.180.10 37 64 4.7E-19 T 13-10-2018 AP3564_14515 08b80481b1555f68e7f05410b697b093 70 Gene3D G3DSA:3.40.50.720 2 36 4.7E-19 T 13-10-2018 AP3564_14180 79e0a0415017a4edd62ea0ddf90f82d5 158 Pfam PF11188 Protein of unknown function (DUF2975) 30 158 5.8E-39 T 13-10-2018 IPR021354 Protein of unknown function DUF2975 AP3564_07360 fb123ffca721ce72747fde5e599b9dd1 340 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 8 340 2.4E-122 T 13-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AP3564_07360 fb123ffca721ce72747fde5e599b9dd1 340 Pfam PF06463 Molybdenum Cofactor Synthesis C 193 318 2.8E-39 T 13-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AP3564_07360 fb123ffca721ce72747fde5e599b9dd1 340 Pfam PF13353 4Fe-4S single cluster domain 24 130 1.6E-8 T 13-10-2018 AP3564_07360 fb123ffca721ce72747fde5e599b9dd1 340 SMART SM00729 16 227 4.8E-17 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AP3564_07360 fb123ffca721ce72747fde5e599b9dd1 340 SUPERFAMILY SSF102114 9 284 3.01E-82 T 13-10-2018 AP3564_07360 fb123ffca721ce72747fde5e599b9dd1 340 Pfam PF04055 Radical SAM superfamily 20 184 2.4E-34 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AP3564_07360 fb123ffca721ce72747fde5e599b9dd1 340 Gene3D G3DSA:3.20.20.70 4 340 1.3E-106 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_07360 fb123ffca721ce72747fde5e599b9dd1 340 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 22 33 - T 13-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AP3564_07360 fb123ffca721ce72747fde5e599b9dd1 340 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 7 340 41.286 T 13-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AP3564_05065 4310983babece4320186f5a6b71e952d 330 Pfam PF13177 DNA polymerase III, delta subunit 11 170 1.6E-58 T 13-10-2018 AP3564_05065 4310983babece4320186f5a6b71e952d 330 Gene3D G3DSA:3.40.50.300 7 170 2.0E-54 T 13-10-2018 AP3564_05065 4310983babece4320186f5a6b71e952d 330 SUPERFAMILY SSF52540 10 185 4.82E-43 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_05065 4310983babece4320186f5a6b71e952d 330 Pfam PF09115 DNA polymerase III, delta subunit, C terminal 246 328 6.7E-5 T 13-10-2018 IPR015199 DNA polymerase III, delta subunit, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AP3564_05065 4310983babece4320186f5a6b71e952d 330 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 17 197 3.8E-63 T 13-10-2018 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AP3564_03955 6ec91564b98e121798bb864437ec9dd6 148 TIGRFAM TIGR01120 rpiB: ribose 5-phosphate isomerase B 2 143 1.3E-50 T 13-10-2018 IPR004785 Ribose 5-phosphate isomerase B GO:0004751|GO:0006098 AP3564_03955 6ec91564b98e121798bb864437ec9dd6 148 SUPERFAMILY SSF89623 2 144 5.62E-58 T 13-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 AP3564_03955 6ec91564b98e121798bb864437ec9dd6 148 Pfam PF02502 Ribose/Galactose Isomerase 3 140 5.2E-56 T 13-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 AP3564_03955 6ec91564b98e121798bb864437ec9dd6 148 Gene3D G3DSA:3.40.1400.10 1 147 4.7E-60 T 13-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 AP3564_03955 6ec91564b98e121798bb864437ec9dd6 148 PIRSF PIRSF005384 1 147 3.6E-58 T 13-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 AP3564_03955 6ec91564b98e121798bb864437ec9dd6 148 TIGRFAM TIGR00689 rpiB_lacA_lacB: sugar-phosphate isomerase, RpiB/LacA/LacB family 3 145 7.1E-60 T 13-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 AP3564_14825 d3b747a1e8c91af804ace5dfaa277e90 216 Gene3D G3DSA:3.40.50.1390 1 157 5.8E-28 T 13-10-2018 AP3564_14825 d3b747a1e8c91af804ace5dfaa277e90 216 Pfam PF00239 Resolvase, N terminal domain 3 147 2.0E-26 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AP3564_14825 d3b747a1e8c91af804ace5dfaa277e90 216 SMART SM00857 3 149 6.6E-35 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AP3564_14825 d3b747a1e8c91af804ace5dfaa277e90 216 SUPERFAMILY SSF53041 1 149 1.1E-25 T 13-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 AP3564_08190 6e018cbb92972f33f0bcef50107b13dd 371 Pfam PF12698 ABC-2 family transporter protein 21 362 1.2E-31 T 13-10-2018 AP3564_02680 f4c0ae011b95e3ebc52005f3a69a1b66 480 Pfam PF00072 Response regulator receiver domain 4 113 5.8E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_02680 f4c0ae011b95e3ebc52005f3a69a1b66 480 Gene3D G3DSA:1.10.10.60 415 479 7.6E-6 T 13-10-2018 AP3564_02680 f4c0ae011b95e3ebc52005f3a69a1b66 480 Gene3D G3DSA:3.40.50.2300 2 121 3.9E-31 T 13-10-2018 AP3564_02680 f4c0ae011b95e3ebc52005f3a69a1b66 480 Gene3D G3DSA:3.40.50.300 126 309 5.3E-67 T 13-10-2018 AP3564_02680 f4c0ae011b95e3ebc52005f3a69a1b66 480 Gene3D G3DSA:1.10.8.60 310 375 3.6E-18 T 13-10-2018 AP3564_02680 f4c0ae011b95e3ebc52005f3a69a1b66 480 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 163 176 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AP3564_02680 f4c0ae011b95e3ebc52005f3a69a1b66 480 SMART SM00448 2 114 2.4E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_02680 f4c0ae011b95e3ebc52005f3a69a1b66 480 SUPERFAMILY SSF52172 1 184 1.85E-34 T 13-10-2018 IPR011006 CheY-like superfamily AP3564_02680 f4c0ae011b95e3ebc52005f3a69a1b66 480 Pfam PF00158 Sigma-54 interaction domain 139 305 3.0E-67 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AP3564_02680 f4c0ae011b95e3ebc52005f3a69a1b66 480 SUPERFAMILY SSF52540 139 378 1.27E-71 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_02680 f4c0ae011b95e3ebc52005f3a69a1b66 480 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 348 357 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site AP3564_02680 f4c0ae011b95e3ebc52005f3a69a1b66 480 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 225 240 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AP3564_02680 f4c0ae011b95e3ebc52005f3a69a1b66 480 SMART SM00382 159 306 8.7E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_05535 e7e3b5fdf3f1f1672fe7f0cdd9353b64 350 SUPERFAMILY SSF52540 6 339 2.84E-71 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_05535 e7e3b5fdf3f1f1672fe7f0cdd9353b64 350 Pfam PF00437 Type II/IV secretion system protein 14 264 4.6E-44 T 13-10-2018 IPR001482 Type II/IV secretion system protein AP3564_05535 e7e3b5fdf3f1f1672fe7f0cdd9353b64 350 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 195 209 - T 13-10-2018 IPR001482 Type II/IV secretion system protein AP3564_05535 e7e3b5fdf3f1f1672fe7f0cdd9353b64 350 Gene3D G3DSA:3.40.50.300 103 347 5.8E-99 T 13-10-2018 AP3564_05535 e7e3b5fdf3f1f1672fe7f0cdd9353b64 350 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 5 343 2.0E-147 T 13-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 AP3564_05535 e7e3b5fdf3f1f1672fe7f0cdd9353b64 350 SMART SM00382 124 249 3.0E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_05535 e7e3b5fdf3f1f1672fe7f0cdd9353b64 350 Gene3D G3DSA:3.30.450.90 1 102 2.4E-33 T 13-10-2018 AP3564_13345 4d75c69b92d140f28e0b5720cc406963 216 Pfam PF03707 Bacterial signalling protein N terminal repeat 51 95 3.4E-9 T 13-10-2018 IPR005330 MHYT domain AP3564_16895 73462af48f1f5d74b6200e11071ad9cc 381 Gene3D G3DSA:3.30.2130.30 9 248 2.1E-126 T 13-10-2018 AP3564_16895 73462af48f1f5d74b6200e11071ad9cc 381 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 198 209 - T 13-10-2018 IPR000241 Putative RNA methylase domain AP3564_16895 73462af48f1f5d74b6200e11071ad9cc 381 SMART SM00981 58 157 3.7E-8 T 13-10-2018 IPR004114 THUMP domain GO:0003723 AP3564_16895 73462af48f1f5d74b6200e11071ad9cc 381 Pfam PF02926 THUMP domain 18 156 5.7E-15 T 13-10-2018 IPR004114 THUMP domain GO:0003723 AP3564_16895 73462af48f1f5d74b6200e11071ad9cc 381 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 302 308 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AP3564_16895 73462af48f1f5d74b6200e11071ad9cc 381 SUPERFAMILY SSF53335 146 374 7.5E-40 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_16895 73462af48f1f5d74b6200e11071ad9cc 381 Gene3D G3DSA:3.40.50.150 163 368 2.1E-126 T 13-10-2018 AP3564_16895 73462af48f1f5d74b6200e11071ad9cc 381 Pfam PF01170 Putative RNA methylase family UPF0020 165 370 2.9E-64 T 13-10-2018 IPR000241 Putative RNA methylase domain AP3564_13420 df7111f84d047f3f12eeb87aa8e98558 301 TIGRFAM TIGR02317 prpB: methylisocitrate lyase 16 295 5.5E-129 T 13-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 AP3564_13420 df7111f84d047f3f12eeb87aa8e98558 301 ProSitePatterns PS00161 Isocitrate lyase signature. 127 132 - T 13-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 AP3564_13420 df7111f84d047f3f12eeb87aa8e98558 301 SUPERFAMILY SSF51621 9 294 1.21E-99 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AP3564_13420 df7111f84d047f3f12eeb87aa8e98558 301 Pfam PF13714 Phosphoenolpyruvate phosphomutase 18 258 5.2E-56 T 13-10-2018 AP3564_13420 df7111f84d047f3f12eeb87aa8e98558 301 Gene3D G3DSA:3.20.20.60 1 301 4.4E-115 T 13-10-2018 AP3564_13420 df7111f84d047f3f12eeb87aa8e98558 301 Hamap MF_01939 2-methylisocitrate lyase [prpB]. 12 296 47.3 T 13-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 AP3564_11855 8138d2563d96b4105dcf28f85816c684 289 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 5 162 1.8E-55 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 AP3564_11855 8138d2563d96b4105dcf28f85816c684 289 SUPERFAMILY SSF48179 166 289 3.51E-38 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AP3564_11855 8138d2563d96b4105dcf28f85816c684 289 PIRSF PIRSF000103 1 289 1.4E-76 T 13-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 AP3564_11855 8138d2563d96b4105dcf28f85816c684 289 Gene3D G3DSA:1.10.1040.10 165 289 4.1E-39 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AP3564_11855 8138d2563d96b4105dcf28f85816c684 289 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 8 21 - T 13-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 AP3564_11855 8138d2563d96b4105dcf28f85816c684 289 Gene3D G3DSA:3.40.50.720 1 164 3.5E-57 T 13-10-2018 AP3564_11855 8138d2563d96b4105dcf28f85816c684 289 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 167 286 9.5E-35 T 13-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 AP3564_11855 8138d2563d96b4105dcf28f85816c684 289 SUPERFAMILY SSF51735 4 165 4.44E-53 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_05660 f0eb90399f4d771e6e0ed04d8cbdfb2d 141 Pfam PF00298 Ribosomal protein L11, RNA binding domain 71 139 2.5E-26 T 13-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 AP3564_05660 f0eb90399f4d771e6e0ed04d8cbdfb2d 141 SMART SM00649 9 140 7.7E-89 T 13-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 AP3564_05660 f0eb90399f4d771e6e0ed04d8cbdfb2d 141 ProSitePatterns PS00359 Ribosomal protein L11 signature. 126 141 - T 13-10-2018 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05660 f0eb90399f4d771e6e0ed04d8cbdfb2d 141 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 66 2.5E-31 T 13-10-2018 IPR020784 Ribosomal protein L11, N-terminal AP3564_05660 f0eb90399f4d771e6e0ed04d8cbdfb2d 141 Gene3D G3DSA:3.30.1550.10 2 71 2.3E-34 T 13-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily AP3564_05660 f0eb90399f4d771e6e0ed04d8cbdfb2d 141 SUPERFAMILY SSF54747 2 84 1.23E-30 T 13-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily AP3564_05660 f0eb90399f4d771e6e0ed04d8cbdfb2d 141 Gene3D G3DSA:1.10.10.250 72 140 4.3E-30 T 13-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily AP3564_05660 f0eb90399f4d771e6e0ed04d8cbdfb2d 141 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 73 4.0E-16 T 13-10-2018 AP3564_05660 f0eb90399f4d771e6e0ed04d8cbdfb2d 141 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 141 31.901 T 13-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 AP3564_05660 f0eb90399f4d771e6e0ed04d8cbdfb2d 141 SUPERFAMILY SSF46906 67 140 1.14E-27 T 13-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily AP3564_05660 f0eb90399f4d771e6e0ed04d8cbdfb2d 141 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 141 6.7E-66 T 13-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_03110 03364c06b4755c3aa7c3e686932de393 112 SUPERFAMILY SSF109915 3 109 1.96E-39 T 13-10-2018 IPR035945 YhaI-like superfamily AP3564_03110 03364c06b4755c3aa7c3e686932de393 112 Gene3D G3DSA:1.10.3750.10 1 112 7.4E-40 T 13-10-2018 IPR035945 YhaI-like superfamily AP3564_03110 03364c06b4755c3aa7c3e686932de393 112 ProDom PD073069 YHAI 3D-STRUCTURE 11 103 4.0E-26 T 13-10-2018 IPR015058 Protein of unknown function DUF1878 AP3564_03110 03364c06b4755c3aa7c3e686932de393 112 Pfam PF08963 Protein of unknown function (DUF1878) 1 109 1.3E-40 T 13-10-2018 IPR015058 Protein of unknown function DUF1878 AP3564_15065 d67aad8d8685d3840ae73b3e3a00e429 284 Pfam PF00106 short chain dehydrogenase 10 198 2.3E-54 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_15065 d67aad8d8685d3840ae73b3e3a00e429 284 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 9.4E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_15065 d67aad8d8685d3840ae73b3e3a00e429 284 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 9.4E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_15065 d67aad8d8685d3840ae73b3e3a00e429 284 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 9.4E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_15065 d67aad8d8685d3840ae73b3e3a00e429 284 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 9.4E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_15065 d67aad8d8685d3840ae73b3e3a00e429 284 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 9.4E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_15065 d67aad8d8685d3840ae73b3e3a00e429 284 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 9 190 0.0021 T 13-10-2018 AP3564_15065 d67aad8d8685d3840ae73b3e3a00e429 284 Gene3D G3DSA:3.40.50.720 8 278 1.5E-72 T 13-10-2018 AP3564_15065 d67aad8d8685d3840ae73b3e3a00e429 284 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 1.5E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_15065 d67aad8d8685d3840ae73b3e3a00e429 284 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 1.5E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_15065 d67aad8d8685d3840ae73b3e3a00e429 284 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 1.5E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_15065 d67aad8d8685d3840ae73b3e3a00e429 284 SUPERFAMILY SSF51735 9 280 2.78E-69 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_15065 d67aad8d8685d3840ae73b3e3a00e429 284 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 146 174 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AP3564_08110 73558b3932440312afe1461f937addc0 490 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 244 6.9E-27 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AP3564_08110 73558b3932440312afe1461f937addc0 490 Gene3D G3DSA:3.30.420.40 1 238 1.3E-71 T 13-10-2018 AP3564_08110 73558b3932440312afe1461f937addc0 490 SUPERFAMILY SSF53067 4 246 6.28E-39 T 13-10-2018 AP3564_08110 73558b3932440312afe1461f937addc0 490 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 258 447 3.6E-23 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AP3564_08110 73558b3932440312afe1461f937addc0 490 Gene3D G3DSA:3.30.420.40 239 488 2.3E-92 T 13-10-2018 AP3564_08110 73558b3932440312afe1461f937addc0 490 SUPERFAMILY SSF53067 254 487 8.2E-36 T 13-10-2018 AP3564_00855 4df3b556fcecd060f0f60360ffd45a91 476 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 142 156 - T 13-10-2018 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 AP3564_00855 4df3b556fcecd060f0f60360ffd45a91 476 SMART SM00845 326 473 2.9E-80 T 13-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 AP3564_00855 4df3b556fcecd060f0f60360ffd45a91 476 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 2 474 40.019 T 13-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 AP3564_00855 4df3b556fcecd060f0f60360ffd45a91 476 Gene3D G3DSA:1.10.150.380 298 411 3.5E-40 T 13-10-2018 AP3564_00855 4df3b556fcecd060f0f60360ffd45a91 476 SUPERFAMILY SSF89095 295 401 2.53E-37 T 13-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 AP3564_00855 4df3b556fcecd060f0f60360ffd45a91 476 Gene3D G3DSA:1.10.10.410 413 476 3.0E-25 T 13-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal AP3564_00855 4df3b556fcecd060f0f60360ffd45a91 476 Pfam PF02637 GatB domain 326 473 4.3E-57 T 13-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 AP3564_00855 4df3b556fcecd060f0f60360ffd45a91 476 SUPERFAMILY SSF55931 4 294 9.16E-126 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 AP3564_00855 4df3b556fcecd060f0f60360ffd45a91 476 Pfam PF02934 GatB/GatE catalytic domain 5 286 2.3E-115 T 13-10-2018 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 AP3564_00855 4df3b556fcecd060f0f60360ffd45a91 476 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 1 472 2.0E-187 T 13-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 AP3564_02100 4fabbded11db0a8c28c76a7068a50d49 304 TIGRFAM TIGR03211 catechol_2_3: catechol 2,3 dioxygenase 3 304 2.3E-132 T 13-10-2018 IPR017624 Catechol 2,3 dioxygenase GO:0008198|GO:0018577|GO:0019439|GO:0055114 KEGG: 00361+1.13.11.2|KEGG: 00362+1.13.11.2|KEGG: 00622+1.13.11.2|KEGG: 00643+1.13.11.2|MetaCyc: PWY-5419|MetaCyc: PWY-5641 AP3564_02100 4fabbded11db0a8c28c76a7068a50d49 304 Gene3D G3DSA:3.10.180.10 1 133 1.2E-41 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AP3564_02100 4fabbded11db0a8c28c76a7068a50d49 304 SUPERFAMILY SSF54593 1 271 2.86E-48 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AP3564_02100 4fabbded11db0a8c28c76a7068a50d49 304 Gene3D G3DSA:3.10.180.10 145 303 2.1E-37 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AP3564_02100 4fabbded11db0a8c28c76a7068a50d49 304 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 8 115 9.3E-8 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AP3564_02100 4fabbded11db0a8c28c76a7068a50d49 304 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 146 262 1.3E-19 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AP3564_08415 d2f365157498bd518d70dd75700bac8e 348 SUPERFAMILY SSF51905 1 182 8.47E-39 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_08415 d2f365157498bd518d70dd75700bac8e 348 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 8 189 1.1E-34 T 13-10-2018 AP3564_08415 d2f365157498bd518d70dd75700bac8e 348 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 122 130 1.3E-10 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_08415 d2f365157498bd518d70dd75700bac8e 348 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 6 28 1.3E-10 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_08415 d2f365157498bd518d70dd75700bac8e 348 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 161 185 1.3E-10 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_08415 d2f365157498bd518d70dd75700bac8e 348 Gene3D G3DSA:3.50.50.60 1 348 4.2E-98 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_08415 d2f365157498bd518d70dd75700bac8e 348 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 121 139 1.9E-7 T 13-10-2018 AP3564_08415 d2f365157498bd518d70dd75700bac8e 348 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 165 183 1.9E-7 T 13-10-2018 AP3564_08415 d2f365157498bd518d70dd75700bac8e 348 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 1.9E-7 T 13-10-2018 AP3564_08415 d2f365157498bd518d70dd75700bac8e 348 SUPERFAMILY SSF51905 166 348 1.13E-8 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_08415 d2f365157498bd518d70dd75700bac8e 348 PIRSF PIRSF000332 3 198 4.2E-15 T 13-10-2018 IPR000960 Flavin monooxygenase FMO GO:0004499|GO:0050660|GO:0050661|GO:0055114 AP3564_08415 d2f365157498bd518d70dd75700bac8e 348 PIRSF PIRSF000332 221 312 2.4E-5 T 13-10-2018 IPR000960 Flavin monooxygenase FMO GO:0004499|GO:0050660|GO:0050661|GO:0055114 AP3564_06605 9bef920236a7de7e282d499c606ae9fd 393 Gene3D G3DSA:3.90.350.10 230 327 3.4E-5 T 13-10-2018 IPR014736 Transposase, Tn5-like, core AP3564_06605 9bef920236a7de7e282d499c606ae9fd 393 SUPERFAMILY SSF53098 24 344 6.68E-22 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_06605 9bef920236a7de7e282d499c606ae9fd 393 Pfam PF01609 Transposase DDE domain 141 344 1.2E-19 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_02705 ed23ea9b170bc153966a517dabc08c2b 549 PIRSF PIRSF000538 2 547 3.0E-57 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AP3564_02705 ed23ea9b170bc153966a517dabc08c2b 549 Gene3D G3DSA:3.30.420.40 1 278 4.6E-58 T 13-10-2018 AP3564_02705 ed23ea9b170bc153966a517dabc08c2b 549 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 289 486 2.9E-41 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AP3564_02705 ed23ea9b170bc153966a517dabc08c2b 549 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 279 5.9E-13 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AP3564_02705 ed23ea9b170bc153966a517dabc08c2b 549 Gene3D G3DSA:3.30.420.40 281 549 3.8E-81 T 13-10-2018 AP3564_02705 ed23ea9b170bc153966a517dabc08c2b 549 SUPERFAMILY SSF53067 284 535 2.59E-55 T 13-10-2018 AP3564_02705 ed23ea9b170bc153966a517dabc08c2b 549 SUPERFAMILY SSF53067 3 281 5.67E-34 T 13-10-2018 AP3564_02705 ed23ea9b170bc153966a517dabc08c2b 549 TIGRFAM TIGR01234 L-ribulokinase: ribulokinase 3 537 1.7E-188 T 13-10-2018 IPR005929 Ribulokinase GO:0005524|GO:0008741|GO:0019569 KEGG: 00040+2.7.1.16 AP3564_02705 ed23ea9b170bc153966a517dabc08c2b 549 Hamap MF_00520 Ribulokinase [araB]. 2 547 52.248 T 13-10-2018 IPR005929 Ribulokinase GO:0005524|GO:0008741|GO:0019569 KEGG: 00040+2.7.1.16 AP3564_08930 64358fc3286505910a22424b79095248 104 Gene3D G3DSA:3.30.1050.10 24 101 3.9E-7 T 13-10-2018 IPR036527 SCP2 sterol-binding domain superfamily AP3564_08930 64358fc3286505910a22424b79095248 104 Pfam PF02036 SCP-2 sterol transfer family 46 100 4.7E-5 T 13-10-2018 IPR003033 SCP2 sterol-binding domain AP3564_08930 64358fc3286505910a22424b79095248 104 SUPERFAMILY SSF55718 36 100 5.18E-8 T 13-10-2018 IPR036527 SCP2 sterol-binding domain superfamily AP3564_09645 a0f7dc1c16843fc135e1e8cd6fea9a4c 393 SUPERFAMILY SSF53098 27 344 1.44E-21 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_09645 a0f7dc1c16843fc135e1e8cd6fea9a4c 393 Gene3D G3DSA:3.90.350.10 212 327 3.1E-5 T 13-10-2018 IPR014736 Transposase, Tn5-like, core AP3564_09645 a0f7dc1c16843fc135e1e8cd6fea9a4c 393 Pfam PF01609 Transposase DDE domain 102 344 1.6E-18 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_15375 a0f7dc1c16843fc135e1e8cd6fea9a4c 393 SUPERFAMILY SSF53098 27 344 1.44E-21 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_15375 a0f7dc1c16843fc135e1e8cd6fea9a4c 393 Gene3D G3DSA:3.90.350.10 212 327 3.1E-5 T 13-10-2018 IPR014736 Transposase, Tn5-like, core AP3564_15375 a0f7dc1c16843fc135e1e8cd6fea9a4c 393 Pfam PF01609 Transposase DDE domain 102 344 1.6E-18 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_13870 a0f7dc1c16843fc135e1e8cd6fea9a4c 393 SUPERFAMILY SSF53098 27 344 1.44E-21 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_13870 a0f7dc1c16843fc135e1e8cd6fea9a4c 393 Gene3D G3DSA:3.90.350.10 212 327 3.1E-5 T 13-10-2018 IPR014736 Transposase, Tn5-like, core AP3564_13870 a0f7dc1c16843fc135e1e8cd6fea9a4c 393 Pfam PF01609 Transposase DDE domain 102 344 1.6E-18 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_07165 3c543a2281500e9a05fe8c477aab575c 288 Gene3D G3DSA:3.20.20.70 1 287 6.3E-97 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_07165 3c543a2281500e9a05fe8c477aab575c 288 Pfam PF01116 Fructose-bisphosphate aldolase class-II 4 280 4.8E-95 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AP3564_07165 3c543a2281500e9a05fe8c477aab575c 288 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 131 142 - T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AP3564_07165 3c543a2281500e9a05fe8c477aab575c 288 SUPERFAMILY SSF51569 2 280 2.05E-90 T 13-10-2018 AP3564_07165 3c543a2281500e9a05fe8c477aab575c 288 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 280 9.4E-81 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AP3564_07165 3c543a2281500e9a05fe8c477aab575c 288 PIRSF PIRSF001359 1 281 5.8E-83 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AP3564_15790 f0be140ac4649a965c29b4b179bb2d89 75 Pfam PF17209 Hfq protein 7 69 2.2E-31 T 13-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 AP3564_15790 f0be140ac4649a965c29b4b179bb2d89 75 Gene3D G3DSA:2.30.30.100 1 74 8.9E-34 T 13-10-2018 AP3564_15790 f0be140ac4649a965c29b4b179bb2d89 75 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 6 65 8.1E-31 T 13-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 AP3564_15790 f0be140ac4649a965c29b4b179bb2d89 75 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 1 65 28.96 T 13-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 AP3564_15790 f0be140ac4649a965c29b4b179bb2d89 75 SUPERFAMILY SSF50182 6 64 6.14E-23 T 13-10-2018 IPR010920 LSM domain superfamily AP3564_10320 3c443dde2d10198648605369f1e2a343 261 Pfam PF00005 ABC transporter 22 160 5.2E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_10320 3c443dde2d10198648605369f1e2a343 261 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_10320 3c443dde2d10198648605369f1e2a343 261 Gene3D G3DSA:3.40.50.300 2 260 2.5E-67 T 13-10-2018 AP3564_10320 3c443dde2d10198648605369f1e2a343 261 SMART SM00382 31 211 2.3E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_10320 3c443dde2d10198648605369f1e2a343 261 SUPERFAMILY SSF52540 3 235 1.95E-73 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_02200 76a61870d2cb3750bfec8eaf8a9684f0 401 PIRSF PIRSF001434 3 401 4.7E-143 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AP3564_02200 76a61870d2cb3750bfec8eaf8a9684f0 401 Gene3D G3DSA:3.40.640.10 16 265 5.9E-87 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_02200 76a61870d2cb3750bfec8eaf8a9684f0 401 Gene3D G3DSA:3.90.1150.10 266 401 1.3E-51 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_02200 76a61870d2cb3750bfec8eaf8a9684f0 401 SUPERFAMILY SSF53383 37 400 5.59E-116 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_02200 76a61870d2cb3750bfec8eaf8a9684f0 401 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 18 399 8.5E-135 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AP3564_02200 76a61870d2cb3750bfec8eaf8a9684f0 401 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 209 223 - T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AP3564_00775 3456855165206821a154465374a41696 512 Pfam PF01808 AICARFT/IMPCHase bienzyme 135 445 2.3E-124 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AP3564_00775 3456855165206821a154465374a41696 512 SMART SM00851 15 130 1.4E-56 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain AP3564_00775 3456855165206821a154465374a41696 512 Gene3D G3DSA:3.40.140.20 386 512 5.4E-58 T 13-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AP3564_00775 3456855165206821a154465374a41696 512 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 3 512 45.815 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AP3564_00775 3456855165206821a154465374a41696 512 SUPERFAMILY SSF52335 3 195 4.84E-70 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily AP3564_00775 3456855165206821a154465374a41696 512 SUPERFAMILY SSF53927 208 512 2.31E-131 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 AP3564_00775 3456855165206821a154465374a41696 512 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 4 512 2.8E-248 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AP3564_00775 3456855165206821a154465374a41696 512 Gene3D G3DSA:3.40.140.20 204 360 1.4E-60 T 13-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AP3564_00775 3456855165206821a154465374a41696 512 Gene3D G3DSA:3.40.50.1380 1 198 2.1E-89 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily AP3564_00775 3456855165206821a154465374a41696 512 SMART SM00798 135 447 1.3E-206 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AP3564_00775 3456855165206821a154465374a41696 512 Pfam PF02142 MGS-like domain 16 130 1.2E-30 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain AP3564_00775 3456855165206821a154465374a41696 512 PIRSF PIRSF000414 1 512 6.8E-219 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AP3564_04000 f2b698b080c5704ebd7f345cde2ea7f9 164 Hamap MF_01170 Chromosome-anchoring protein RacA [racA]. 1 164 19.63 T 13-10-2018 IPR023522 Chromosome-anchoring protein RacA AP3564_04000 f2b698b080c5704ebd7f345cde2ea7f9 164 Pfam PF13411 MerR HTH family regulatory protein 1 62 6.5E-13 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AP3564_04000 f2b698b080c5704ebd7f345cde2ea7f9 164 SUPERFAMILY SSF46955 1 94 1.24E-9 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily AP3564_04000 f2b698b080c5704ebd7f345cde2ea7f9 164 Gene3D G3DSA:1.10.1660.10 1 65 5.5E-24 T 13-10-2018 AP3564_09970 911ead73524fe221a770ab1bd3a33cae 289 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 181 209 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AP3564_09970 911ead73524fe221a770ab1bd3a33cae 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 184 1.5E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_09970 911ead73524fe221a770ab1bd3a33cae 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 47 64 1.5E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_09970 911ead73524fe221a770ab1bd3a33cae 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 232 1.5E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_09970 911ead73524fe221a770ab1bd3a33cae 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 249 269 1.5E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_09970 911ead73524fe221a770ab1bd3a33cae 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 133 1.5E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_09970 911ead73524fe221a770ab1bd3a33cae 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 194 213 1.5E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_09970 911ead73524fe221a770ab1bd3a33cae 289 Gene3D G3DSA:3.40.50.720 2 286 7.7E-90 T 13-10-2018 AP3564_09970 911ead73524fe221a770ab1bd3a33cae 289 SUPERFAMILY SSF51735 45 286 1.61E-83 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_09970 911ead73524fe221a770ab1bd3a33cae 289 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 55 284 4.1E-64 T 13-10-2018 AP3564_09970 911ead73524fe221a770ab1bd3a33cae 289 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 194 213 7.3E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_09970 911ead73524fe221a770ab1bd3a33cae 289 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 174 182 7.3E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_09970 911ead73524fe221a770ab1bd3a33cae 289 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 122 133 7.3E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_00175 4b93251c7d31a3a3210b2c97b7ec1b09 181 Gene3D G3DSA:3.30.70.1290 1 164 3.4E-39 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 AP3564_00175 4b93251c7d31a3a3210b2c97b7ec1b09 181 SUPERFAMILY SSF143422 1 128 1.44E-25 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 AP3564_00175 4b93251c7d31a3a3210b2c97b7ec1b09 181 SMART SM01321 9 123 7.0E-34 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 AP3564_00175 4b93251c7d31a3a3210b2c97b7ec1b09 181 Pfam PF01797 Transposase IS200 like 12 121 6.7E-14 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 AP3564_03040 47ce4ef64407e740ebf73d8f3d83f3c8 115 Pfam PF06133 Control of competence regulator ComK, YlbF/YmcA 6 108 6.0E-20 T 13-10-2018 IPR010368 Control of competence regulator ComK, YlbF/YmcA AP3564_03040 47ce4ef64407e740ebf73d8f3d83f3c8 115 Gene3D G3DSA:1.20.1500.10 2 113 4.6E-29 T 13-10-2018 IPR023378 YheA/YmcA-like domain superfamily AP3564_03040 47ce4ef64407e740ebf73d8f3d83f3c8 115 SUPERFAMILY SSF158622 6 113 2.22E-29 T 13-10-2018 IPR023378 YheA/YmcA-like domain superfamily AP3564_03040 47ce4ef64407e740ebf73d8f3d83f3c8 115 Hamap MF_01526 UPF0342 protein . 2 113 15.816 T 13-10-2018 IPR010368 Control of competence regulator ComK, YlbF/YmcA AP3564_01585 2b7379943b69591bcfa9f54570ed8097 351 TIGRFAM TIGR00846 caca2: calcium/proton exchanger 3 348 2.4E-121 T 13-10-2018 IPR004713 Calcium/proton exchanger GO:0006812|GO:0008324|GO:0016021|GO:0055085 AP3564_01585 2b7379943b69591bcfa9f54570ed8097 351 TIGRFAM TIGR00378 cax: calcium/proton exchanger 10 349 4.4E-149 T 13-10-2018 IPR004798 Calcium/proton exchanger CAX GO:0006816|GO:0015369 AP3564_01585 2b7379943b69591bcfa9f54570ed8097 351 Gene3D G3DSA:1.20.58.1130 194 238 4.9E-25 T 13-10-2018 AP3564_01585 2b7379943b69591bcfa9f54570ed8097 351 Gene3D G3DSA:1.20.1420.30 60 342 4.9E-25 T 13-10-2018 AP3564_01585 2b7379943b69591bcfa9f54570ed8097 351 Pfam PF01699 Sodium/calcium exchanger protein 206 343 6.2E-18 T 13-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 AP3564_01585 2b7379943b69591bcfa9f54570ed8097 351 Pfam PF01699 Sodium/calcium exchanger protein 28 179 6.0E-19 T 13-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 AP3564_08590 eb0b91ef92958684e91469fe3af48fb9 152 PRINTS PR00502 NUDIX hydrolase family signature 40 55 3.2E-6 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AP3564_08590 eb0b91ef92958684e91469fe3af48fb9 152 PRINTS PR00502 NUDIX hydrolase family signature 26 40 3.2E-6 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AP3564_08590 eb0b91ef92958684e91469fe3af48fb9 152 Gene3D G3DSA:3.90.79.10 1 152 2.1E-42 T 13-10-2018 AP3564_08590 eb0b91ef92958684e91469fe3af48fb9 152 Pfam PF00293 NUDIX domain 4 123 1.3E-18 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AP3564_08590 eb0b91ef92958684e91469fe3af48fb9 152 SUPERFAMILY SSF55811 3 128 7.31E-29 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AP3564_14820 d4fe8ae5ca581b1cd9281b83c99bbdfc 76 SUPERFAMILY SSF158221 1 42 4.58E-15 T 13-10-2018 AP3564_14820 d4fe8ae5ca581b1cd9281b83c99bbdfc 76 Pfam PF05979 Bacterial protein of unknown function (DUF896) 5 68 3.0E-31 T 13-10-2018 IPR009242 Protein of unknown function DUF896 AP3564_14820 d4fe8ae5ca581b1cd9281b83c99bbdfc 76 Gene3D G3DSA:1.10.287.540 1 56 2.1E-23 T 13-10-2018 AP3564_14820 d4fe8ae5ca581b1cd9281b83c99bbdfc 76 Hamap MF_01103 UPF0291 protein . 2 60 17.308 T 13-10-2018 IPR009242 Protein of unknown function DUF896 AP3564_18850 873cf1bc50752cf499d8ce375f6d0057 284 Pfam PF01842 ACT domain 201 259 4.3E-7 T 13-10-2018 IPR002912 ACT domain AP3564_18850 873cf1bc50752cf499d8ce375f6d0057 284 Gene3D G3DSA:3.30.70.260 193 284 3.2E-26 T 13-10-2018 AP3564_18850 873cf1bc50752cf499d8ce375f6d0057 284 Gene3D G3DSA:3.40.190.10 84 173 1.8E-56 T 13-10-2018 AP3564_18850 873cf1bc50752cf499d8ce375f6d0057 284 SUPERFAMILY SSF53850 1 185 1.16E-53 T 13-10-2018 AP3564_18850 873cf1bc50752cf499d8ce375f6d0057 284 Gene3D G3DSA:3.40.190.10 5 181 1.8E-56 T 13-10-2018 AP3564_18850 873cf1bc50752cf499d8ce375f6d0057 284 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 229 236 - T 13-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 AP3564_18850 873cf1bc50752cf499d8ce375f6d0057 284 Pfam PF00800 Prephenate dehydratase 3 184 4.7E-60 T 13-10-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 AP3564_18850 873cf1bc50752cf499d8ce375f6d0057 284 SUPERFAMILY SSF55021 192 280 4.2E-25 T 13-10-2018 AP3564_18850 873cf1bc50752cf499d8ce375f6d0057 284 PIRSF PIRSF001500 1 284 1.6E-73 T 13-10-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 AP3564_18850 873cf1bc50752cf499d8ce375f6d0057 284 ProSitePatterns PS00857 Prephenate dehydratase signature 1. 159 181 - T 13-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 AP3564_18640 7360d30fd2734d0408da56331fe591f4 138 SUPERFAMILY SSF53098 1 137 3.03E-46 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_18640 7360d30fd2734d0408da56331fe591f4 138 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 4 135 9.1E-51 T 13-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 AP3564_18640 7360d30fd2734d0408da56331fe591f4 138 Pfam PF03652 Holliday junction resolvase 1 136 6.7E-48 T 13-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 AP3564_18640 7360d30fd2734d0408da56331fe591f4 138 SMART SM00732 1 103 2.3E-42 T 13-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 AP3564_18640 7360d30fd2734d0408da56331fe591f4 138 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 1 138 28.593 T 13-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 AP3564_18640 7360d30fd2734d0408da56331fe591f4 138 Gene3D G3DSA:3.30.420.140 1 138 1.2E-53 T 13-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 AP3564_07760 17622d0281dd9a76f48204bcbfc5aa37 349 Gene3D G3DSA:3.90.550.10 121 347 1.5E-64 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AP3564_07760 17622d0281dd9a76f48204bcbfc5aa37 349 SUPERFAMILY SSF54631 7 56 2.58E-5 T 13-10-2018 AP3564_07760 17622d0281dd9a76f48204bcbfc5aa37 349 Pfam PF00483 Nucleotidyl transferase 123 343 6.5E-41 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AP3564_07760 17622d0281dd9a76f48204bcbfc5aa37 349 Gene3D G3DSA:3.10.580.10 1 113 3.0E-19 T 13-10-2018 AP3564_07760 17622d0281dd9a76f48204bcbfc5aa37 349 SUPERFAMILY SSF53448 47 347 9.39E-69 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AP3564_07760 17622d0281dd9a76f48204bcbfc5aa37 349 Pfam PF00571 CBS domain 9 52 8.1E-4 T 13-10-2018 IPR000644 CBS domain AP3564_05290 d3471af75c2eda4917b6e07292f2758d 294 Pfam PF01430 Hsp33 protein 3 280 4.1E-90 T 13-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 AP3564_05290 d3471af75c2eda4917b6e07292f2758d 294 SUPERFAMILY SSF118352 231 289 1.7E-21 T 13-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 AP3564_05290 d3471af75c2eda4917b6e07292f2758d 294 Gene3D G3DSA:3.90.1280.10 234 292 1.9E-22 T 13-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 AP3564_05290 d3471af75c2eda4917b6e07292f2758d 294 SUPERFAMILY SSF64397 2 241 3.79E-77 T 13-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 AP3564_05290 d3471af75c2eda4917b6e07292f2758d 294 PIRSF PIRSF005261 1 292 1.5E-75 T 13-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 AP3564_05290 d3471af75c2eda4917b6e07292f2758d 294 Hamap MF_00117 33 kDa chaperonin [hslO]. 2 291 41.59 T 13-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 AP3564_05290 d3471af75c2eda4917b6e07292f2758d 294 Gene3D G3DSA:3.55.30.10 2 233 6.5E-93 T 13-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 AP3564_09770 a004db41bfbebaafe6151f2af55b1871 201 Gene3D G3DSA:3.30.1940.10 18 92 1.4E-75 T 13-10-2018 IPR037154 YtpR-like superfamily AP3564_09770 a004db41bfbebaafe6151f2af55b1871 201 Gene3D G3DSA:2.40.50.140 5 199 1.4E-75 T 13-10-2018 AP3564_09770 a004db41bfbebaafe6151f2af55b1871 201 Pfam PF14794 Domain of unknown function (DUF4479) 24 91 3.3E-26 T 13-10-2018 IPR027855 Domain of unknown function DUF4479 AP3564_09770 a004db41bfbebaafe6151f2af55b1871 201 SUPERFAMILY SSF50249 92 200 1.0E-33 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_09770 a004db41bfbebaafe6151f2af55b1871 201 Pfam PF01588 Putative tRNA binding domain 96 197 6.1E-28 T 13-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 AP3564_00885 cd5d9288c30ea39db2e0a5252a1b7594 181 Pfam PF08747 Domain of unknown function (DUF1788) 68 172 5.3E-8 T 13-10-2018 IPR014858 Protein of unknown function DUF1788 AP3564_11595 e1ab88d7a69f9b59bf2e9a7a03a0c85b 232 Pfam PF08876 Domain of unknown function (DUF1836) 57 153 1.8E-16 T 13-10-2018 IPR014975 Protein of unknown function DUF1836 AP3564_16830 ff5c706b90ffa902dc789a8b1f594aad 124 Pfam PF14071 Putative coat protein 11 124 2.8E-32 T 13-10-2018 IPR025953 Putative coat protein YlbD AP3564_00945 10b600807a9e985129af446fe82e8ed5 363 SUPERFAMILY SSF52540 2 170 4.33E-14 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_00945 10b600807a9e985129af446fe82e8ed5 363 Gene3D G3DSA:3.40.50.300 1 67 3.6E-12 T 13-10-2018 AP3564_00945 10b600807a9e985129af446fe82e8ed5 363 Pfam PF00271 Helicase conserved C-terminal domain 2 42 2.2E-7 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_08255 62ab192c076257be0a751b7e7ae2ff9b 612 Pfam PF13185 GAF domain 249 304 1.6E-9 T 13-10-2018 IPR003018 GAF domain GO:0005515 AP3564_08255 62ab192c076257be0a751b7e7ae2ff9b 612 Gene3D G3DSA:3.30.450.40 5 171 1.0E-6 T 13-10-2018 IPR029016 GAF-like domain superfamily AP3564_08255 62ab192c076257be0a751b7e7ae2ff9b 612 SMART SM00065 188 313 9.5E-6 T 13-10-2018 IPR003018 GAF domain GO:0005515 AP3564_08255 62ab192c076257be0a751b7e7ae2ff9b 612 SUPERFAMILY SSF55781 169 310 5.67E-20 T 13-10-2018 AP3564_08255 62ab192c076257be0a751b7e7ae2ff9b 612 Gene3D G3DSA:3.30.450.40 176 324 1.8E-14 T 13-10-2018 IPR029016 GAF-like domain superfamily AP3564_03135 6ca1b9062d5a76b37eb003a31736977c 359 Gene3D G3DSA:3.90.1150.10 257 359 1.6E-41 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_03135 6ca1b9062d5a76b37eb003a31736977c 359 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 4 359 2.5E-161 T 13-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 AP3564_03135 6ca1b9062d5a76b37eb003a31736977c 359 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 186 205 - T 13-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site AP3564_03135 6ca1b9062d5a76b37eb003a31736977c 359 SUPERFAMILY SSF53383 2 358 1.71E-115 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_03135 6ca1b9062d5a76b37eb003a31736977c 359 Gene3D G3DSA:3.40.640.10 17 255 4.3E-89 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_03135 6ca1b9062d5a76b37eb003a31736977c 359 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 2 359 50.407 T 13-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 AP3564_03135 6ca1b9062d5a76b37eb003a31736977c 359 Pfam PF00266 Aminotransferase class-V 4 348 2.8E-51 T 13-10-2018 IPR000192 Aminotransferase class V domain AP3564_03135 6ca1b9062d5a76b37eb003a31736977c 359 PIRSF PIRSF000525 1 359 2.3E-154 T 13-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 AP3564_14390 531c44b7b2e11e9b6498dbe5d260f5d1 163 SUPERFAMILY SSF55729 1 155 4.96E-27 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase AP3564_14390 531c44b7b2e11e9b6498dbe5d260f5d1 163 Pfam PF13420 Acetyltransferase (GNAT) domain 3 149 2.2E-17 T 13-10-2018 AP3564_14390 531c44b7b2e11e9b6498dbe5d260f5d1 163 Gene3D G3DSA:3.40.630.30 1 158 1.5E-37 T 13-10-2018 AP3564_14720 0da117b22e8b3dc9f4c54191d2bd4bd8 325 Pfam PF03445 Putative nucleotidyltransferase DUF294 10 140 1.2E-30 T 13-10-2018 IPR005105 Protein-PII uridylyltransferase, N-terminal GO:0008773 AP3564_14720 0da117b22e8b3dc9f4c54191d2bd4bd8 325 Pfam PF10335 Putative nucleotidyltransferase substrate binding domain 178 311 2.7E-20 T 13-10-2018 IPR018821 Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding AP3564_11115 b0c7a29c57ae4c0f025b64e8dfab5e6d 103 SUPERFAMILY SSF52540 6 103 1.94E-27 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_11115 b0c7a29c57ae4c0f025b64e8dfab5e6d 103 Gene3D G3DSA:3.40.50.300 2 103 1.4E-28 T 13-10-2018 AP3564_11115 b0c7a29c57ae4c0f025b64e8dfab5e6d 103 Pfam PF00005 ABC transporter 9 59 1.3E-12 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_08320 afee082a7763bbfa9e284472e5e27b5f 266 SMART SM00346 9 99 8.5E-19 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AP3564_08320 afee082a7763bbfa9e284472e5e27b5f 266 Pfam PF09339 IclR helix-turn-helix domain 11 61 6.2E-14 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AP3564_08320 afee082a7763bbfa9e284472e5e27b5f 266 Pfam PF01614 Bacterial transcriptional regulator 131 251 2.7E-34 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal AP3564_08320 afee082a7763bbfa9e284472e5e27b5f 266 Gene3D G3DSA:3.30.450.40 82 261 4.8E-51 T 13-10-2018 IPR029016 GAF-like domain superfamily AP3564_08320 afee082a7763bbfa9e284472e5e27b5f 266 SUPERFAMILY SSF55781 67 253 1.57E-39 T 13-10-2018 AP3564_08320 afee082a7763bbfa9e284472e5e27b5f 266 SUPERFAMILY SSF46785 9 81 8.99E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_08320 afee082a7763bbfa9e284472e5e27b5f 266 Gene3D G3DSA:1.10.10.10 7 81 6.1E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_10980 6759ccd990b9b3f99fca42b31a3b72a7 524 SUPERFAMILY SSF53335 9 506 2.11E-128 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_10980 6759ccd990b9b3f99fca42b31a3b72a7 524 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 273 279 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AP3564_10980 6759ccd990b9b3f99fca42b31a3b72a7 524 Gene3D G3DSA:1.20.1260.30 4 146 1.3E-37 T 13-10-2018 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily AP3564_10980 6759ccd990b9b3f99fca42b31a3b72a7 524 Pfam PF12161 HsdM N-terminal domain 10 123 7.1E-23 T 13-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain AP3564_10980 6759ccd990b9b3f99fca42b31a3b72a7 524 Pfam PF02384 N-6 DNA Methylase 155 469 1.3E-100 T 13-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 AP3564_10980 6759ccd990b9b3f99fca42b31a3b72a7 524 Gene3D G3DSA:3.40.50.150 157 453 4.4E-104 T 13-10-2018 AP3564_10980 6759ccd990b9b3f99fca42b31a3b72a7 524 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 270 282 9.1E-20 T 13-10-2018 AP3564_10980 6759ccd990b9b3f99fca42b31a3b72a7 524 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 304 328 9.1E-20 T 13-10-2018 AP3564_10980 6759ccd990b9b3f99fca42b31a3b72a7 524 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 202 216 9.1E-20 T 13-10-2018 AP3564_10980 6759ccd990b9b3f99fca42b31a3b72a7 524 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 179 195 9.1E-20 T 13-10-2018 AP3564_15405 e402c1baf7d4ed81ef0d84c365ab2db0 627 Pfam PF01555 DNA methylase 111 448 6.7E-39 T 13-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 AP3564_15405 e402c1baf7d4ed81ef0d84c365ab2db0 627 SUPERFAMILY SSF53335 79 471 5.4E-62 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_15405 e402c1baf7d4ed81ef0d84c365ab2db0 627 PIRSF PIRSF015855 1 626 9.6E-179 T 13-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 AP3564_15405 e402c1baf7d4ed81ef0d84c365ab2db0 627 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 111 123 4.2E-14 T 13-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 AP3564_15405 e402c1baf7d4ed81ef0d84c365ab2db0 627 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 168 187 4.2E-14 T 13-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 AP3564_15405 e402c1baf7d4ed81ef0d84c365ab2db0 627 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 416 430 4.2E-14 T 13-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 AP3564_15405 e402c1baf7d4ed81ef0d84c365ab2db0 627 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 393 415 4.2E-14 T 13-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 AP3564_15405 e402c1baf7d4ed81ef0d84c365ab2db0 627 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 114 120 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AP3564_14925 f29db8093a67c087858261dae67c2576 235 SMART SM00052 2 231 1.1E-26 T 13-10-2018 IPR001633 EAL domain AP3564_14925 f29db8093a67c087858261dae67c2576 235 SUPERFAMILY SSF141868 2 231 3.27E-56 T 13-10-2018 IPR035919 EAL domain superfamily AP3564_14925 f29db8093a67c087858261dae67c2576 235 Gene3D G3DSA:3.20.20.450 1 234 1.3E-57 T 13-10-2018 IPR035919 EAL domain superfamily AP3564_14925 f29db8093a67c087858261dae67c2576 235 Pfam PF00563 EAL domain 2 226 2.4E-48 T 13-10-2018 IPR001633 EAL domain AP3564_03075 5f7a8e0139abf1412bfa497c88e316d3 412 SUPERFAMILY SSF56300 5 281 2.25E-58 T 13-10-2018 AP3564_03075 5f7a8e0139abf1412bfa497c88e316d3 412 PIRSF PIRSF033091 2 411 1.0E-142 T 13-10-2018 IPR014576 Predicted phosphoesterase, YhaO type AP3564_03075 5f7a8e0139abf1412bfa497c88e316d3 412 Gene3D G3DSA:3.60.21.10 3 247 3.5E-61 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like AP3564_03075 5f7a8e0139abf1412bfa497c88e316d3 412 Pfam PF00149 Calcineurin-like phosphoesterase 6 203 1.2E-15 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AP3564_08570 1a436e243ddc8b7f58f7f7e9b38ef747 252 Gene3D G3DSA:3.20.20.70 1 252 2.0E-108 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_08570 1a436e243ddc8b7f58f7f7e9b38ef747 252 Pfam PF00977 Histidine biosynthesis protein 5 235 3.2E-89 T 13-10-2018 IPR006062 Histidine biosynthesis GO:0000105 AP3564_08570 1a436e243ddc8b7f58f7f7e9b38ef747 252 SUPERFAMILY SSF51366 1 252 7.85E-83 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AP3564_08570 1a436e243ddc8b7f58f7f7e9b38ef747 252 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 252 7.7E-122 T 13-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 AP3564_08570 1a436e243ddc8b7f58f7f7e9b38ef747 252 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 252 49.458 T 13-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 AP3564_17805 a88c8f5a81bed5c1b112a7b125ea8542 429 Gene3D G3DSA:2.30.42.10 134 215 2.4E-16 T 13-10-2018 AP3564_17805 a88c8f5a81bed5c1b112a7b125ea8542 429 SUPERFAMILY SSF50156 136 200 6.7E-11 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 AP3564_17805 a88c8f5a81bed5c1b112a7b125ea8542 429 Pfam PF05580 SpoIVB peptidase S55 206 414 8.4E-88 T 13-10-2018 IPR008763 Peptidase S55, SpoIVB AP3564_17805 a88c8f5a81bed5c1b112a7b125ea8542 429 SUPERFAMILY SSF50494 347 412 3.66E-6 T 13-10-2018 IPR009003 Peptidase S1, PA clan AP3564_17805 a88c8f5a81bed5c1b112a7b125ea8542 429 TIGRFAM TIGR02860 spore_IV_B: stage IV sporulation protein B 5 419 8.4E-175 T 13-10-2018 IPR014219 Peptidase S55, sporulation stage IV, protein B AP3564_17805 a88c8f5a81bed5c1b112a7b125ea8542 429 Pfam PF13180 PDZ domain 136 196 6.5E-8 T 13-10-2018 IPR001478 PDZ domain GO:0005515 AP3564_17805 a88c8f5a81bed5c1b112a7b125ea8542 429 SMART SM00228 120 189 4.6E-7 T 13-10-2018 IPR001478 PDZ domain GO:0005515 AP3564_11995 51c10170a9f3eeb482c47b7ac5eb47e0 285 Pfam PF00924 Mechanosensitive ion channel 71 267 9.7E-49 T 13-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AP3564_11995 51c10170a9f3eeb482c47b7ac5eb47e0 285 Gene3D G3DSA:2.30.30.60 128 177 1.3E-20 T 13-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily AP3564_11995 51c10170a9f3eeb482c47b7ac5eb47e0 285 SUPERFAMILY SSF82689 176 278 4.18E-23 T 13-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 AP3564_11995 51c10170a9f3eeb482c47b7ac5eb47e0 285 SUPERFAMILY SSF82861 30 111 3.66E-15 T 13-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 AP3564_11995 51c10170a9f3eeb482c47b7ac5eb47e0 285 Gene3D G3DSA:3.30.70.100 178 265 6.4E-31 T 13-10-2018 AP3564_11995 51c10170a9f3eeb482c47b7ac5eb47e0 285 SUPERFAMILY SSF50182 113 170 1.44E-14 T 13-10-2018 IPR010920 LSM domain superfamily AP3564_16785 4e02df393220a00167aa819dec87cdd4 164 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 4 157 9.9E-63 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AP3564_16785 4e02df393220a00167aa819dec87cdd4 164 Gene3D G3DSA:3.40.50.620 1 164 6.2E-58 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AP3564_16785 4e02df393220a00167aa819dec87cdd4 164 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 3 159 35.988 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AP3564_16785 4e02df393220a00167aa819dec87cdd4 164 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 4 62 2.0E-17 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AP3564_16785 4e02df393220a00167aa819dec87cdd4 164 SUPERFAMILY SSF52374 4 157 6.76E-43 T 13-10-2018 AP3564_16785 4e02df393220a00167aa819dec87cdd4 164 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 12 78 0.002 T 13-10-2018 AP3564_16785 4e02df393220a00167aa819dec87cdd4 164 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 86 102 7.5E-53 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AP3564_16785 4e02df393220a00167aa819dec87cdd4 164 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 113 135 7.5E-53 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AP3564_16785 4e02df393220a00167aa819dec87cdd4 164 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 3 21 7.5E-53 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AP3564_16785 4e02df393220a00167aa819dec87cdd4 164 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 21 42 7.5E-53 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AP3564_16785 4e02df393220a00167aa819dec87cdd4 164 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 50 74 7.5E-53 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AP3564_16785 4e02df393220a00167aa819dec87cdd4 164 Pfam PF01467 Cytidylyltransferase-like 7 134 5.1E-19 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AP3564_00585 ab6ce34c3cb0220b93ba81f0cbb1aab3 158 SMART SM00903 10 150 4.3E-48 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 AP3564_00585 ab6ce34c3cb0220b93ba81f0cbb1aab3 158 Gene3D G3DSA:2.30.110.10 1 157 9.8E-47 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AP3564_00585 ab6ce34c3cb0220b93ba81f0cbb1aab3 158 Pfam PF01613 Flavin reductase like domain 10 151 3.6E-34 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 AP3564_00585 ab6ce34c3cb0220b93ba81f0cbb1aab3 158 SUPERFAMILY SSF50475 1 153 3.14E-45 T 13-10-2018 AP3564_07940 7993a0f18279cc604b1d27960d4d5ad3 162 SUPERFAMILY SSF53098 35 156 2.09E-9 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_07940 7993a0f18279cc604b1d27960d4d5ad3 162 Pfam PF13358 DDE superfamily endonuclease 5 136 1.3E-36 T 13-10-2018 IPR038717 Tc1-like transposase, DDE domain AP3564_07940 7993a0f18279cc604b1d27960d4d5ad3 162 Gene3D G3DSA:3.30.420.470 5 161 3.6E-16 T 13-10-2018 AP3564_04940 7993a0f18279cc604b1d27960d4d5ad3 162 SUPERFAMILY SSF53098 35 156 2.09E-9 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_04940 7993a0f18279cc604b1d27960d4d5ad3 162 Pfam PF13358 DDE superfamily endonuclease 5 136 1.3E-36 T 13-10-2018 IPR038717 Tc1-like transposase, DDE domain AP3564_04940 7993a0f18279cc604b1d27960d4d5ad3 162 Gene3D G3DSA:3.30.420.470 5 161 3.6E-16 T 13-10-2018 AP3564_07270 7993a0f18279cc604b1d27960d4d5ad3 162 SUPERFAMILY SSF53098 35 156 2.09E-9 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_07270 7993a0f18279cc604b1d27960d4d5ad3 162 Pfam PF13358 DDE superfamily endonuclease 5 136 1.3E-36 T 13-10-2018 IPR038717 Tc1-like transposase, DDE domain AP3564_07270 7993a0f18279cc604b1d27960d4d5ad3 162 Gene3D G3DSA:3.30.420.470 5 161 3.6E-16 T 13-10-2018 AP3564_07080 7993a0f18279cc604b1d27960d4d5ad3 162 SUPERFAMILY SSF53098 35 156 2.09E-9 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_07080 7993a0f18279cc604b1d27960d4d5ad3 162 Pfam PF13358 DDE superfamily endonuclease 5 136 1.3E-36 T 13-10-2018 IPR038717 Tc1-like transposase, DDE domain AP3564_07080 7993a0f18279cc604b1d27960d4d5ad3 162 Gene3D G3DSA:3.30.420.470 5 161 3.6E-16 T 13-10-2018 AP3564_04545 7993a0f18279cc604b1d27960d4d5ad3 162 SUPERFAMILY SSF53098 35 156 2.09E-9 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_04545 7993a0f18279cc604b1d27960d4d5ad3 162 Pfam PF13358 DDE superfamily endonuclease 5 136 1.3E-36 T 13-10-2018 IPR038717 Tc1-like transposase, DDE domain AP3564_04545 7993a0f18279cc604b1d27960d4d5ad3 162 Gene3D G3DSA:3.30.420.470 5 161 3.6E-16 T 13-10-2018 AP3564_03695 7993a0f18279cc604b1d27960d4d5ad3 162 SUPERFAMILY SSF53098 35 156 2.09E-9 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_03695 7993a0f18279cc604b1d27960d4d5ad3 162 Pfam PF13358 DDE superfamily endonuclease 5 136 1.3E-36 T 13-10-2018 IPR038717 Tc1-like transposase, DDE domain AP3564_03695 7993a0f18279cc604b1d27960d4d5ad3 162 Gene3D G3DSA:3.30.420.470 5 161 3.6E-16 T 13-10-2018 AP3564_10440 843947f5f1d0c9f48486730ee94dbbcf 132 Gene3D G3DSA:3.90.20.10 1 51 1.2E-7 T 13-10-2018 AP3564_10440 843947f5f1d0c9f48486730ee94dbbcf 132 SUPERFAMILY SSF57997 13 124 9.81E-8 T 13-10-2018 AP3564_10440 843947f5f1d0c9f48486730ee94dbbcf 132 Gene3D G3DSA:1.20.5.1070 52 130 1.2E-8 T 13-10-2018 AP3564_10440 843947f5f1d0c9f48486730ee94dbbcf 132 Pfam PF11727 Invariant surface glycoprotein 10 106 1.2E-5 T 13-10-2018 IPR021057 Trypanosome invariant surface glycoprotein AP3564_06460 093a92399000489513e2c6e991a44a0b 466 SMART SM00345 18 77 6.4E-21 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_06460 093a92399000489513e2c6e991a44a0b 466 SUPERFAMILY SSF46785 8 81 1.68E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_06460 093a92399000489513e2c6e991a44a0b 466 Pfam PF00155 Aminotransferase class I and II 107 407 6.0E-22 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AP3564_06460 093a92399000489513e2c6e991a44a0b 466 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 77 7.5E-20 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_06460 093a92399000489513e2c6e991a44a0b 466 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 2.7E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_06460 093a92399000489513e2c6e991a44a0b 466 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 2.7E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_06460 093a92399000489513e2c6e991a44a0b 466 Gene3D G3DSA:3.40.640.10 93 460 3.8E-117 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_06460 093a92399000489513e2c6e991a44a0b 466 Gene3D G3DSA:1.10.10.10 3 78 4.8E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_06460 093a92399000489513e2c6e991a44a0b 466 SUPERFAMILY SSF53383 71 465 1.34E-86 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_12380 164d5aee60e496810ef0463a21da676c 188 Pfam PF02417 Chromate transporter 8 172 9.9E-36 T 13-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 AP3564_18495 07928d762b6fa99a1921920a709a357a 389 Pfam PF07454 Stage II sporulation protein P (SpoIIP) 101 373 4.6E-79 T 13-10-2018 IPR010897 Sporulation stage II, protein P AP3564_18495 07928d762b6fa99a1921920a709a357a 389 TIGRFAM TIGR02867 spore_II_P: stage II sporulation protein P 177 377 4.6E-73 T 13-10-2018 IPR010897 Sporulation stage II, protein P AP3564_18495 07928d762b6fa99a1921920a709a357a 389 SUPERFAMILY SSF53187 255 377 6.59E-6 T 13-10-2018 AP3564_12575 1c8bec54be1abc5ff7014893a1a7acd2 184 Hamap MF_00163 Peptide deformylase [def]. 3 182 28.893 T 13-10-2018 IPR023635 Peptide deformylase AP3564_12575 1c8bec54be1abc5ff7014893a1a7acd2 184 PRINTS PR01576 Peptide deformylase signature 47 76 1.8E-32 T 13-10-2018 IPR023635 Peptide deformylase AP3564_12575 1c8bec54be1abc5ff7014893a1a7acd2 184 PRINTS PR01576 Peptide deformylase signature 108 119 1.8E-32 T 13-10-2018 IPR023635 Peptide deformylase AP3564_12575 1c8bec54be1abc5ff7014893a1a7acd2 184 PRINTS PR01576 Peptide deformylase signature 121 139 1.8E-32 T 13-10-2018 IPR023635 Peptide deformylase AP3564_12575 1c8bec54be1abc5ff7014893a1a7acd2 184 PRINTS PR01576 Peptide deformylase signature 140 169 1.8E-32 T 13-10-2018 IPR023635 Peptide deformylase AP3564_12575 1c8bec54be1abc5ff7014893a1a7acd2 184 Pfam PF01327 Polypeptide deformylase 4 171 4.5E-48 T 13-10-2018 IPR023635 Peptide deformylase AP3564_12575 1c8bec54be1abc5ff7014893a1a7acd2 184 PIRSF PIRSF004749 2 184 1.6E-50 T 13-10-2018 IPR023635 Peptide deformylase AP3564_12575 1c8bec54be1abc5ff7014893a1a7acd2 184 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 5 179 1.8E-52 T 13-10-2018 IPR023635 Peptide deformylase AP3564_12575 1c8bec54be1abc5ff7014893a1a7acd2 184 Gene3D G3DSA:3.90.45.10 1 184 3.3E-70 T 13-10-2018 IPR036821 Peptide deformylase superfamily AP3564_12575 1c8bec54be1abc5ff7014893a1a7acd2 184 SUPERFAMILY SSF56420 2 178 7.46E-62 T 13-10-2018 IPR036821 Peptide deformylase superfamily AP3564_08980 20a66fd03912eef80637c823b4d1a082 417 SUPERFAMILY SSF53098 77 362 7.51E-43 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_08980 20a66fd03912eef80637c823b4d1a082 417 Pfam PF01609 Transposase DDE domain 124 336 4.5E-30 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_15425 20a66fd03912eef80637c823b4d1a082 417 SUPERFAMILY SSF53098 77 362 7.51E-43 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_15425 20a66fd03912eef80637c823b4d1a082 417 Pfam PF01609 Transposase DDE domain 124 336 4.5E-30 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_15450 20a66fd03912eef80637c823b4d1a082 417 SUPERFAMILY SSF53098 77 362 7.51E-43 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_15450 20a66fd03912eef80637c823b4d1a082 417 Pfam PF01609 Transposase DDE domain 124 336 4.5E-30 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_13480 f229a85b6627d2ed4f441dee6be5b027 404 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 9 133 6.5E-17 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AP3564_13480 f229a85b6627d2ed4f441dee6be5b027 404 Gene3D G3DSA:3.40.50.720 4 143 8.9E-30 T 13-10-2018 AP3564_13480 f229a85b6627d2ed4f441dee6be5b027 404 SUPERFAMILY SSF55347 139 317 2.45E-9 T 13-10-2018 AP3564_13480 f229a85b6627d2ed4f441dee6be5b027 404 SUPERFAMILY SSF51735 4 181 2.32E-33 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_06995 992dc2a22cb386a2578a0457ae60a2ee 94 PRINTS PR00297 10kDa chaperonin signature 24 45 1.5E-33 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AP3564_06995 992dc2a22cb386a2578a0457ae60a2ee 94 PRINTS PR00297 10kDa chaperonin signature 2 17 1.5E-33 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AP3564_06995 992dc2a22cb386a2578a0457ae60a2ee 94 PRINTS PR00297 10kDa chaperonin signature 80 93 1.5E-33 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AP3564_06995 992dc2a22cb386a2578a0457ae60a2ee 94 PRINTS PR00297 10kDa chaperonin signature 59 71 1.5E-33 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AP3564_06995 992dc2a22cb386a2578a0457ae60a2ee 94 SUPERFAMILY SSF50129 2 93 6.12E-36 T 13-10-2018 IPR011032 GroES-like superfamily AP3564_06995 992dc2a22cb386a2578a0457ae60a2ee 94 SMART SM00883 1 93 5.2E-57 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AP3564_06995 992dc2a22cb386a2578a0457ae60a2ee 94 Pfam PF00166 Chaperonin 10 Kd subunit 2 93 2.3E-37 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AP3564_06995 992dc2a22cb386a2578a0457ae60a2ee 94 Gene3D G3DSA:2.30.33.40 1 94 1.4E-39 T 13-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 AP3564_06995 992dc2a22cb386a2578a0457ae60a2ee 94 ProSitePatterns PS00681 Chaperonins cpn10 signature. 2 26 - T 13-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 AP3564_06995 992dc2a22cb386a2578a0457ae60a2ee 94 Hamap MF_00580 10 kDa chaperonin [groS]. 1 94 27.791 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AP3564_16025 4f4abab63e8e56e279625485654dbcca 566 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 3.3E-19 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AP3564_16025 4f4abab63e8e56e279625485654dbcca 566 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 3.3E-19 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AP3564_16025 4f4abab63e8e56e279625485654dbcca 566 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 3.3E-19 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AP3564_16025 4f4abab63e8e56e279625485654dbcca 566 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 3.3E-19 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AP3564_16025 4f4abab63e8e56e279625485654dbcca 566 Pfam PF04073 Aminoacyl-tRNA editing domain 257 373 2.3E-28 T 13-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AP3564_16025 4f4abab63e8e56e279625485654dbcca 566 Pfam PF03129 Anticodon binding domain 472 563 6.6E-22 T 13-10-2018 IPR004154 Anticodon-binding AP3564_16025 4f4abab63e8e56e279625485654dbcca 566 SUPERFAMILY SSF55826 218 386 1.7E-32 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 AP3564_16025 4f4abab63e8e56e279625485654dbcca 566 SUPERFAMILY SSF55681 9 475 4.24E-105 T 13-10-2018 AP3564_16025 4f4abab63e8e56e279625485654dbcca 566 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 566 42.781 T 13-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AP3564_16025 4f4abab63e8e56e279625485654dbcca 566 PIRSF PIRSF001535 1 566 5.3E-270 T 13-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AP3564_16025 4f4abab63e8e56e279625485654dbcca 566 Gene3D G3DSA:3.90.960.10 240 386 2.6E-264 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 AP3564_16025 4f4abab63e8e56e279625485654dbcca 566 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 562 3.2E-253 T 13-10-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AP3564_16025 4f4abab63e8e56e279625485654dbcca 566 Gene3D G3DSA:3.40.50.800 3 550 2.6E-264 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily AP3564_16025 4f4abab63e8e56e279625485654dbcca 566 Gene3D G3DSA:3.30.930.10 11 462 2.6E-264 T 13-10-2018 AP3564_16025 4f4abab63e8e56e279625485654dbcca 566 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 455 3.8E-60 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_16025 4f4abab63e8e56e279625485654dbcca 566 SUPERFAMILY SSF52954 460 565 1.15E-31 T 13-10-2018 AP3564_13445 4f5c28d0bf7fff7d0f4f328c1eaa5fce 703 SUPERFAMILY SSF56024 334 511 2.47E-56 T 13-10-2018 AP3564_13445 4f5c28d0bf7fff7d0f4f328c1eaa5fce 703 Gene3D G3DSA:3.30.1840.10 12 324 3.9E-111 T 13-10-2018 IPR036830 Polyphosphate kinase middle domain superfamily KEGG: 00190+2.7.4.1 AP3564_13445 4f5c28d0bf7fff7d0f4f328c1eaa5fce 703 SUPERFAMILY SSF143724 122 319 7.26E-62 T 13-10-2018 AP3564_13445 4f5c28d0bf7fff7d0f4f328c1eaa5fce 703 Pfam PF13090 Polyphosphate kinase C-terminal domain 344 693 5.0E-159 T 13-10-2018 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 AP3564_13445 4f5c28d0bf7fff7d0f4f328c1eaa5fce 703 SUPERFAMILY SSF56024 516 700 3.36E-74 T 13-10-2018 AP3564_13445 4f5c28d0bf7fff7d0f4f328c1eaa5fce 703 Gene3D G3DSA:3.30.870.10 339 515 1.5E-74 T 13-10-2018 AP3564_13445 4f5c28d0bf7fff7d0f4f328c1eaa5fce 703 Pfam PF02503 Polyphosphate kinase middle domain 134 334 5.2E-70 T 13-10-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 AP3564_13445 4f5c28d0bf7fff7d0f4f328c1eaa5fce 703 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 18 694 9.9E-280 T 13-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 AP3564_13445 4f5c28d0bf7fff7d0f4f328c1eaa5fce 703 Gene3D G3DSA:3.30.870.10 516 702 3.1E-74 T 13-10-2018 AP3564_13445 4f5c28d0bf7fff7d0f4f328c1eaa5fce 703 Pfam PF13089 Polyphosphate kinase N-terminal domain 18 124 4.1E-40 T 13-10-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 AP3564_13445 4f5c28d0bf7fff7d0f4f328c1eaa5fce 703 SUPERFAMILY SSF140356 15 120 1.96E-39 T 13-10-2018 IPR036832 Polyphosphate kinase N-terminal domain superfamily KEGG: 00190+2.7.4.1 AP3564_13445 4f5c28d0bf7fff7d0f4f328c1eaa5fce 703 Hamap MF_00347 Polyphosphate kinase [ppk]. 15 698 29.589 T 13-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 AP3564_13445 4f5c28d0bf7fff7d0f4f328c1eaa5fce 703 PIRSF PIRSF015589 1 703 2.7E-286 T 13-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 AP3564_15695 85413991c787cfd8f8fda05bf9ec8f0d 125 Pfam PF12788 YmaF family 34 122 8.6E-16 T 13-10-2018 IPR024307 YmaF AP3564_09010 69bf897722f8d8466f8ad5ff4827bcd0 298 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 3 45 2.4E-11 T 13-10-2018 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AP3564_09010 69bf897722f8d8466f8ad5ff4827bcd0 298 PIRSF PIRSF005963 1 298 4.2E-139 T 13-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AP3564_09010 69bf897722f8d8466f8ad5ff4827bcd0 298 Pfam PF04055 Radical SAM superfamily 64 223 1.1E-15 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AP3564_09010 69bf897722f8d8466f8ad5ff4827bcd0 298 TIGRFAM TIGR00510 lipA: lipoyl synthase 3 292 5.7E-123 T 13-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AP3564_09010 69bf897722f8d8466f8ad5ff4827bcd0 298 SMART SM00729 57 265 1.9E-16 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AP3564_09010 69bf897722f8d8466f8ad5ff4827bcd0 298 Hamap MF_00206 Lipoyl synthase [lipA]. 1 295 149.577 T 13-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AP3564_09010 69bf897722f8d8466f8ad5ff4827bcd0 298 SUPERFAMILY SSF102114 20 289 2.62E-66 T 13-10-2018 AP3564_09010 69bf897722f8d8466f8ad5ff4827bcd0 298 Gene3D G3DSA:3.20.20.70 8 268 4.9E-25 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_02700 396a97892a5b4cc4c1fb7e9628dcf4f5 339 SMART SM00829 11 334 3.0E-8 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AP3564_02700 396a97892a5b4cc4c1fb7e9628dcf4f5 339 Gene3D G3DSA:3.90.180.10 13 327 7.5E-138 T 13-10-2018 AP3564_02700 396a97892a5b4cc4c1fb7e9628dcf4f5 339 Pfam PF00107 Zinc-binding dehydrogenase 175 300 1.3E-34 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AP3564_02700 396a97892a5b4cc4c1fb7e9628dcf4f5 339 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 60 74 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AP3564_02700 396a97892a5b4cc4c1fb7e9628dcf4f5 339 Gene3D G3DSA:3.40.50.720 149 285 7.5E-138 T 13-10-2018 AP3564_02700 396a97892a5b4cc4c1fb7e9628dcf4f5 339 SUPERFAMILY SSF51735 138 304 6.43E-49 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_02700 396a97892a5b4cc4c1fb7e9628dcf4f5 339 SUPERFAMILY SSF50129 2 159 7.76E-58 T 13-10-2018 IPR011032 GroES-like superfamily AP3564_02700 396a97892a5b4cc4c1fb7e9628dcf4f5 339 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 134 1.0E-35 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AP3564_16700 6896689de219e8b86a58cdedea1576fa 645 SMART SM00740 581 639 7.0E-11 T 13-10-2018 IPR005543 PASTA domain AP3564_16700 6896689de219e8b86a58cdedea1576fa 645 Gene3D G3DSA:3.30.10.20 580 640 2.1E-6 T 13-10-2018 AP3564_16700 6896689de219e8b86a58cdedea1576fa 645 Gene3D G3DSA:3.40.710.10 283 478 2.8E-113 T 13-10-2018 AP3564_16700 6896689de219e8b86a58cdedea1576fa 645 TIGRFAM TIGR02214 spoVD_pbp: stage V sporulation protein D 11 639 4.5E-264 T 13-10-2018 IPR011927 Stage V sporulation protein D AP3564_16700 6896689de219e8b86a58cdedea1576fa 645 Gene3D G3DSA:3.30.450.330 222 562 2.8E-113 T 13-10-2018 AP3564_16700 6896689de219e8b86a58cdedea1576fa 645 Pfam PF03717 Penicillin-binding Protein dimerisation domain 56 201 5.9E-24 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AP3564_16700 6896689de219e8b86a58cdedea1576fa 645 SUPERFAMILY SSF54184 585 638 3.14E-11 T 13-10-2018 AP3564_16700 6896689de219e8b86a58cdedea1576fa 645 Gene3D G3DSA:3.90.1310.30 49 220 7.5E-48 T 13-10-2018 AP3564_16700 6896689de219e8b86a58cdedea1576fa 645 Pfam PF00905 Penicillin binding protein transpeptidase domain 247 558 4.4E-88 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AP3564_16700 6896689de219e8b86a58cdedea1576fa 645 SUPERFAMILY SSF56519 51 220 7.06E-47 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 AP3564_16700 6896689de219e8b86a58cdedea1576fa 645 SUPERFAMILY SSF56601 171 569 1.13E-100 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AP3564_16700 6896689de219e8b86a58cdedea1576fa 645 Pfam PF03793 PASTA domain 585 638 6.1E-10 T 13-10-2018 IPR005543 PASTA domain AP3564_11715 f31794970b07c5e08a0f30cfd1d6432e 245 Gene3D G3DSA:3.60.21.10 1 245 2.9E-59 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like AP3564_11715 f31794970b07c5e08a0f30cfd1d6432e 245 PIRSF PIRSF000883 2 241 2.5E-51 T 13-10-2018 IPR011152 Phosphoesterase MJ0912 AP3564_11715 f31794970b07c5e08a0f30cfd1d6432e 245 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 3 190 7.4E-21 T 13-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 AP3564_11715 f31794970b07c5e08a0f30cfd1d6432e 245 SUPERFAMILY SSF56300 3 231 6.08E-48 T 13-10-2018 AP3564_06845 99e1d7555e2bb51fabfecec5a142cbbd 261 SUPERFAMILY SSF88659 180 254 7.66E-17 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AP3564_06845 99e1d7555e2bb51fabfecec5a142cbbd 261 Gene3D G3DSA:1.10.10.10 183 254 1.9E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_06845 99e1d7555e2bb51fabfecec5a142cbbd 261 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 29 251 6.3E-38 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AP3564_06845 99e1d7555e2bb51fabfecec5a142cbbd 261 TIGRFAM TIGR02941 Sigma_B: RNA polymerase sigma-B factor 7 253 2.3E-106 T 13-10-2018 IPR014288 RNA polymerase sigma-B factor GO:0016987 AP3564_06845 99e1d7555e2bb51fabfecec5a142cbbd 261 Gene3D G3DSA:1.20.120.1810 2 101 4.5E-19 T 13-10-2018 AP3564_06845 99e1d7555e2bb51fabfecec5a142cbbd 261 TIGRFAM TIGR02980 SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily 27 252 3.1E-88 T 13-10-2018 IPR014322 RNA polymerase sigma-B/F/G type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AP3564_06845 99e1d7555e2bb51fabfecec5a142cbbd 261 Gene3D G3DSA:1.10.10.10 103 156 1.6E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_06845 99e1d7555e2bb51fabfecec5a142cbbd 261 Pfam PF04545 Sigma-70, region 4 202 250 1.6E-17 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 AP3564_06845 99e1d7555e2bb51fabfecec5a142cbbd 261 SUPERFAMILY SSF88946 15 102 6.28E-28 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AP3564_06845 99e1d7555e2bb51fabfecec5a142cbbd 261 PRINTS PR00046 Major sigma-70 factor signature 205 217 6.4E-10 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_06845 99e1d7555e2bb51fabfecec5a142cbbd 261 PRINTS PR00046 Major sigma-70 factor signature 237 248 6.4E-10 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_06845 99e1d7555e2bb51fabfecec5a142cbbd 261 PRINTS PR00046 Major sigma-70 factor signature 222 237 6.4E-10 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_06845 99e1d7555e2bb51fabfecec5a142cbbd 261 PRINTS PR00046 Major sigma-70 factor signature 57 70 6.4E-10 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_06845 99e1d7555e2bb51fabfecec5a142cbbd 261 Pfam PF04539 Sigma-70 region 3 112 169 1.7E-13 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 AP3564_06845 99e1d7555e2bb51fabfecec5a142cbbd 261 Pfam PF04542 Sigma-70 region 2 34 102 1.4E-17 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AP3564_06845 99e1d7555e2bb51fabfecec5a142cbbd 261 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 57 70 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AP3564_06845 99e1d7555e2bb51fabfecec5a142cbbd 261 SUPERFAMILY SSF88659 106 180 5.67E-15 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AP3564_12120 d338bb75d088ce86a23fffe85ed852fd 236 Pfam PF12650 Domain of unknown function (DUF3784) 5 94 5.5E-12 T 13-10-2018 IPR017259 Uncharacterised conserved protein UCP037672 AP3564_10565 76ccd1593c268b3ec0e96827d165241f 276 Gene3D G3DSA:3.30.420.10 102 259 9.4E-16 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AP3564_10565 76ccd1593c268b3ec0e96827d165241f 276 SUPERFAMILY SSF53098 100 265 4.86E-42 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_10565 76ccd1593c268b3ec0e96827d165241f 276 Pfam PF00665 Integrase core domain 107 222 1.0E-32 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AP3564_10565 76ccd1593c268b3ec0e96827d165241f 276 Pfam PF13276 HTH-like domain 26 82 4.1E-16 T 13-10-2018 IPR025948 HTH-like domain AP3564_02830 d9159005c5a2e77bf8e54dfe2362b1b0 191 Gene3D G3DSA:3.40.50.360 1 191 2.5E-59 T 13-10-2018 IPR029039 Flavoprotein-like superfamily AP3564_02830 d9159005c5a2e77bf8e54dfe2362b1b0 191 SUPERFAMILY SSF52218 1 189 2.48E-52 T 13-10-2018 IPR029039 Flavoprotein-like superfamily AP3564_02830 d9159005c5a2e77bf8e54dfe2362b1b0 191 Pfam PF02525 Flavodoxin-like fold 1 185 1.6E-49 T 13-10-2018 IPR003680 Flavodoxin-like fold AP3564_18175 04ed3015534f45726c04740609d19e7a 292 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 21 289 8.9E-86 T 13-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 AP3564_18175 04ed3015534f45726c04740609d19e7a 292 Gene3D G3DSA:1.10.3720.10 59 291 3.5E-35 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_18175 04ed3015534f45726c04740609d19e7a 292 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 291 9.2E-28 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AP3564_18175 04ed3015534f45726c04740609d19e7a 292 SUPERFAMILY SSF161098 29 278 3.53E-42 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_11570 fcfe8aff1eda4b9ee4ee8d3be62a4850 400 SUPERFAMILY SSF52540 36 269 4.81E-77 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_11570 fcfe8aff1eda4b9ee4ee8d3be62a4850 400 Pfam PF00571 CBS domain 284 325 2.4E-4 T 13-10-2018 IPR000644 CBS domain AP3564_11570 fcfe8aff1eda4b9ee4ee8d3be62a4850 400 Pfam PF00571 CBS domain 337 389 0.0048 T 13-10-2018 IPR000644 CBS domain AP3564_11570 fcfe8aff1eda4b9ee4ee8d3be62a4850 400 ProSitePatterns PS00211 ABC transporters family signature. 164 178 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_11570 fcfe8aff1eda4b9ee4ee8d3be62a4850 400 Gene3D G3DSA:3.40.50.300 3 268 1.1E-74 T 13-10-2018 AP3564_11570 fcfe8aff1eda4b9ee4ee8d3be62a4850 400 SMART SM00382 52 249 5.1E-20 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_11570 fcfe8aff1eda4b9ee4ee8d3be62a4850 400 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 36 391 9.0E-155 T 13-10-2018 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 AP3564_11570 fcfe8aff1eda4b9ee4ee8d3be62a4850 400 SUPERFAMILY SSF54631 273 391 2.02E-18 T 13-10-2018 AP3564_11570 fcfe8aff1eda4b9ee4ee8d3be62a4850 400 SMART SM00116 281 330 3.7 T 13-10-2018 IPR000644 CBS domain AP3564_11570 fcfe8aff1eda4b9ee4ee8d3be62a4850 400 SMART SM00116 343 389 0.22 T 13-10-2018 IPR000644 CBS domain AP3564_11570 fcfe8aff1eda4b9ee4ee8d3be62a4850 400 Gene3D G3DSA:3.10.580.10 277 390 8.9E-15 T 13-10-2018 AP3564_11570 fcfe8aff1eda4b9ee4ee8d3be62a4850 400 Pfam PF00005 ABC transporter 44 191 5.4E-36 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_10145 25197a79d201b5bc969ce06b5896346d 503 Gene3D G3DSA:3.30.870.10 135 323 9.2E-47 T 13-10-2018 AP3564_10145 25197a79d201b5bc969ce06b5896346d 503 Hamap MF_01916 Cardiolipin synthase. 33 503 43.9 T 13-10-2018 IPR030874 Cardiolipin synthase, Firmicutes-type GO:0008808|GO:0032049 AP3564_10145 25197a79d201b5bc969ce06b5896346d 503 SUPERFAMILY SSF56024 123 333 4.93E-52 T 13-10-2018 AP3564_10145 25197a79d201b5bc969ce06b5896346d 503 Gene3D G3DSA:3.30.870.10 331 474 4.0E-27 T 13-10-2018 AP3564_10145 25197a79d201b5bc969ce06b5896346d 503 Pfam PF13396 Phospholipase_D-nuclease N-terminal 39 81 6.0E-7 T 13-10-2018 IPR027379 Cardiolipin synthase N-terminal AP3564_10145 25197a79d201b5bc969ce06b5896346d 503 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 28 503 8.9E-192 T 13-10-2018 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 AP3564_10145 25197a79d201b5bc969ce06b5896346d 503 SMART SM00155 238 265 1.6E-5 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AP3564_10145 25197a79d201b5bc969ce06b5896346d 503 SMART SM00155 416 443 2.0E-8 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AP3564_10145 25197a79d201b5bc969ce06b5896346d 503 Pfam PF13091 PLD-like domain 346 469 1.9E-26 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AP3564_10145 25197a79d201b5bc969ce06b5896346d 503 Pfam PF13091 PLD-like domain 156 269 2.0E-12 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AP3564_10145 25197a79d201b5bc969ce06b5896346d 503 SUPERFAMILY SSF56024 290 489 8.07E-50 T 13-10-2018 AP3564_05440 5c01ada3057895a4e161bacd3a875a3a 150 Pfam PF01446 Replication protein 52 147 4.7E-13 T 13-10-2018 IPR000989 Replication protein GO:0003677|GO:0005727|GO:0006260 AP3564_04040 79330ad314a78ae30f80b82dfd73803a 286 Gene3D G3DSA:3.20.20.70 1 286 1.8E-117 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_04040 79330ad314a78ae30f80b82dfd73803a 286 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 134 145 - T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AP3564_04040 79330ad314a78ae30f80b82dfd73803a 286 SUPERFAMILY SSF51569 1 285 1.47E-108 T 13-10-2018 AP3564_04040 79330ad314a78ae30f80b82dfd73803a 286 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 285 2.6E-118 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AP3564_04040 79330ad314a78ae30f80b82dfd73803a 286 Pfam PF01116 Fructose-bisphosphate aldolase class-II 4 284 1.7E-106 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AP3564_04040 79330ad314a78ae30f80b82dfd73803a 286 PIRSF PIRSF001359 1 285 1.9E-130 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AP3564_04040 79330ad314a78ae30f80b82dfd73803a 286 TIGRFAM TIGR01859 fruc_bis_ald_: fructose-1,6-bisphosphate aldolase, class II 3 285 1.8E-134 T 13-10-2018 IPR011289 Fructose-1,6-bisphosphate aldolase, class 2 GO:0004332|GO:0006096|GO:0008270|GO:0030388 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 AP3564_04040 79330ad314a78ae30f80b82dfd73803a 286 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 74 87 - T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AP3564_19500 e65cd72e9f671e7bd08d207684f963f5 333 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 57 277 3.3E-83 T 13-10-2018 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 AP3564_19500 e65cd72e9f671e7bd08d207684f963f5 333 Gene3D G3DSA:3.90.226.10 59 275 4.1E-86 T 13-10-2018 AP3564_19500 e65cd72e9f671e7bd08d207684f963f5 333 SUPERFAMILY SSF52096 55 268 1.13E-42 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AP3564_19500 e65cd72e9f671e7bd08d207684f963f5 333 Gene3D G3DSA:3.40.1750.20 170 236 4.1E-86 T 13-10-2018 AP3564_19500 e65cd72e9f671e7bd08d207684f963f5 333 Pfam PF01343 Peptidase family S49 130 280 9.1E-57 T 13-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 AP3564_09750 e012b3b2b3a1c09a798b2d94d265c6ff 357 SUPERFAMILY SSF101821 71 180 4.27E-30 T 13-10-2018 AP3564_09750 e012b3b2b3a1c09a798b2d94d265c6ff 357 SUPERFAMILY SSF53187 4 351 2.15E-72 T 13-10-2018 AP3564_09750 e012b3b2b3a1c09a798b2d94d265c6ff 357 PIRSF PIRSF001123 2 356 3.0E-151 T 13-10-2018 IPR008007 Peptidase M42 AP3564_09750 e012b3b2b3a1c09a798b2d94d265c6ff 357 Gene3D G3DSA:3.40.630.10 10 340 8.5E-120 T 13-10-2018 AP3564_09750 e012b3b2b3a1c09a798b2d94d265c6ff 357 Gene3D G3DSA:2.40.30.40 75 162 8.5E-120 T 13-10-2018 IPR023367 Peptidase M42, domain 2 AP3564_09750 e012b3b2b3a1c09a798b2d94d265c6ff 357 Pfam PF05343 M42 glutamyl aminopeptidase 46 337 7.0E-112 T 13-10-2018 IPR008007 Peptidase M42 AP3564_10735 76d3a9cf7e4ca1cda634d85cb7bcc369 480 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 19 36 - T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AP3564_10735 76d3a9cf7e4ca1cda634d85cb7bcc369 480 Gene3D G3DSA:3.30.1360.60 1 78 5.3E-29 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 AP3564_10735 76d3a9cf7e4ca1cda634d85cb7bcc369 480 TIGRFAM TIGR01996 PTS-II-BC-sucr: PTS system, sucrose-specific IIBC component 3 464 3.3E-201 T 13-10-2018 IPR010973 Phosphotransferase system, sucrose-specific IIBC component GO:0008982|GO:0009401|GO:0016021 AP3564_10735 76d3a9cf7e4ca1cda634d85cb7bcc369 480 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 28 111 7.3E-24 T 13-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AP3564_10735 76d3a9cf7e4ca1cda634d85cb7bcc369 480 Pfam PF02378 Phosphotransferase system, EIIC 110 410 8.1E-52 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AP3564_10735 76d3a9cf7e4ca1cda634d85cb7bcc369 480 Pfam PF00367 phosphotransferase system, EIIB 8 41 5.2E-17 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AP3564_10735 76d3a9cf7e4ca1cda634d85cb7bcc369 480 SUPERFAMILY SSF55604 6 82 2.48E-22 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 AP3564_18290 4e9aa0d12bc379516c9dacbbf034af02 320 Gene3D G3DSA:3.40.50.11270 12 103 9.6E-99 T 13-10-2018 AP3564_18290 4e9aa0d12bc379516c9dacbbf034af02 320 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 3 286 3.2E-96 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 AP3564_18290 4e9aa0d12bc379516c9dacbbf034af02 320 Pfam PF02401 LytB protein 4 284 4.8E-83 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 AP3564_18290 4e9aa0d12bc379516c9dacbbf034af02 320 Gene3D G3DSA:3.40.1010.20 104 197 9.6E-99 T 13-10-2018 AP3564_18290 4e9aa0d12bc379516c9dacbbf034af02 320 Gene3D G3DSA:3.40.1010.20 7 284 9.6E-99 T 13-10-2018 AP3564_18290 4e9aa0d12bc379516c9dacbbf034af02 320 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 1 288 33.315 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 AP3564_08130 fa123116ade11c65b6e215c5b9df480f 217 Pfam PF01144 Coenzyme A transferase 9 201 1.8E-47 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 AP3564_08130 fa123116ade11c65b6e215c5b9df480f 217 Gene3D G3DSA:3.40.1080.10 1 214 2.2E-101 T 13-10-2018 AP3564_08130 fa123116ade11c65b6e215c5b9df480f 217 SMART SM00882 6 202 1.6E-75 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 AP3564_08130 fa123116ade11c65b6e215c5b9df480f 217 SUPERFAMILY SSF100950 4 214 2.49E-74 T 13-10-2018 IPR037171 NagB/RpiA transferase-like AP3564_08130 fa123116ade11c65b6e215c5b9df480f 217 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 4 209 1.1E-96 T 13-10-2018 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Reactome: R-HSA-77108 AP3564_08130 fa123116ade11c65b6e215c5b9df480f 217 ProSitePatterns PS01274 Coenzyme A transferases signature 2. 44 52 - T 13-10-2018 IPR004164 Coenzyme A transferase active site GO:0008410 Reactome: R-HSA-77108 AP3564_14655 b0de758f54cf9f45606574560587d4c0 100 SUPERFAMILY SSF117916 3 97 8.5E-32 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily AP3564_14655 b0de758f54cf9f45606574560587d4c0 100 Gene3D G3DSA:3.30.300.130 1 99 6.9E-37 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily AP3564_14655 b0de758f54cf9f45606574560587d4c0 100 Pfam PF01883 Iron-sulfur cluster assembly protein 4 77 2.2E-22 T 13-10-2018 IPR002744 MIP18 family-like AP3564_06150 52f86524eaf05d4987d803aa4594d2cd 185 SUPERFAMILY SSF53697 1 167 5.31E-37 T 13-10-2018 AP3564_06150 52f86524eaf05d4987d803aa4594d2cd 185 TIGRFAM TIGR03127 RuMP_HxlB: 6-phospho 3-hexuloisomerase 7 185 5.5E-71 T 13-10-2018 IPR017552 3-hexulose-6-phosphate isomerase GO:0016853 AP3564_06150 52f86524eaf05d4987d803aa4594d2cd 185 Gene3D G3DSA:3.40.50.10490 1 185 2.2E-51 T 13-10-2018 AP3564_06150 52f86524eaf05d4987d803aa4594d2cd 185 Pfam PF01380 SIS domain 30 131 1.6E-15 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AP3564_11330 d9a0565da966ddbc58814228f6fef8e2 138 PIRSF PIRSF030042 2 137 1.5E-42 T 13-10-2018 IPR016942 Uncharacterised conserved protein UCP030042 AP3564_11330 d9a0565da966ddbc58814228f6fef8e2 138 Pfam PF14340 Domain of unknown function (DUF4395) 4 128 2.1E-29 T 13-10-2018 IPR025508 Domain of unknown function DUF4395 AP3564_05865 35ce8708a0c543b2eff5cba3e39593b3 314 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 1 313 38.195 T 13-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_05865 35ce8708a0c543b2eff5cba3e39593b3 314 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 253 310 5.0E-24 T 13-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_05865 35ce8708a0c543b2eff5cba3e39593b3 314 Gene3D G3DSA:2.170.120.12 50 170 8.3E-92 T 13-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_05865 35ce8708a0c543b2eff5cba3e39593b3 314 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 240 304 1.4E-29 T 13-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_05865 35ce8708a0c543b2eff5cba3e39593b3 314 SUPERFAMILY SSF56553 50 171 8.89E-45 T 13-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_05865 35ce8708a0c543b2eff5cba3e39593b3 314 SMART SM00662 20 227 8.1E-110 T 13-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_05865 35ce8708a0c543b2eff5cba3e39593b3 314 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 56 152 4.9E-26 T 13-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_05865 35ce8708a0c543b2eff5cba3e39593b3 314 Gene3D G3DSA:3.30.1360.10 17 220 8.3E-92 T 13-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_05865 35ce8708a0c543b2eff5cba3e39593b3 314 Gene3D G3DSA:1.10.150.20 237 314 2.3E-34 T 13-10-2018 AP3564_05865 35ce8708a0c543b2eff5cba3e39593b3 314 SUPERFAMILY SSF47789 247 313 5.36E-25 T 13-10-2018 AP3564_05865 35ce8708a0c543b2eff5cba3e39593b3 314 SUPERFAMILY SSF55257 5 230 6.02E-33 T 13-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_05865 35ce8708a0c543b2eff5cba3e39593b3 314 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 20 313 6.1E-129 T 13-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_05865 35ce8708a0c543b2eff5cba3e39593b3 314 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 26 221 3.6E-24 T 13-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_00645 fa1d335e44f9ab60dd9e822095665e74 293 Pfam PF02653 Branched-chain amino acid transport system / permease component 11 277 7.9E-38 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AP3564_18625 ec4a6ce1a9a389c54a087ca5d73e695e 216 Gene3D G3DSA:3.40.50.150 1 214 5.3E-65 T 13-10-2018 AP3564_18625 ec4a6ce1a9a389c54a087ca5d73e695e 216 SUPERFAMILY SSF53335 25 213 3.56E-43 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_18625 ec4a6ce1a9a389c54a087ca5d73e695e 216 Pfam PF01596 O-methyltransferase 29 209 8.5E-32 T 13-10-2018 IPR002935 O-methyltransferase, family 3 GO:0008171 AP3564_11325 37184109ffd3677ac843969dc023cd81 168 Gene3D G3DSA:1.10.10.10 92 167 2.4E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_11325 37184109ffd3677ac843969dc023cd81 168 Pfam PF04542 Sigma-70 region 2 18 81 1.8E-14 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AP3564_11325 37184109ffd3677ac843969dc023cd81 168 SUPERFAMILY SSF88946 8 89 1.06E-19 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AP3564_11325 37184109ffd3677ac843969dc023cd81 168 Pfam PF08281 Sigma-70, region 4 110 160 3.2E-14 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AP3564_11325 37184109ffd3677ac843969dc023cd81 168 SUPERFAMILY SSF88659 96 165 4.58E-14 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AP3564_11325 37184109ffd3677ac843969dc023cd81 168 Gene3D G3DSA:1.10.1740.10 2 83 1.7E-18 T 13-10-2018 AP3564_11325 37184109ffd3677ac843969dc023cd81 168 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 10 163 2.3E-27 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AP3564_18430 48a1b60a7aa21346f9b5c45e94fec7bc 57 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 8.7E-15 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_18430 48a1b60a7aa21346f9b5c45e94fec7bc 57 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 8.7E-15 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_18430 48a1b60a7aa21346f9b5c45e94fec7bc 57 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 8.7E-15 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_18430 48a1b60a7aa21346f9b5c45e94fec7bc 57 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 8.7E-15 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_18430 48a1b60a7aa21346f9b5c45e94fec7bc 57 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 20.291 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_18430 48a1b60a7aa21346f9b5c45e94fec7bc 57 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 3 57 3.4E-21 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_18430 48a1b60a7aa21346f9b5c45e94fec7bc 57 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 16 43 1.0E-7 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_18430 48a1b60a7aa21346f9b5c45e94fec7bc 57 Gene3D G3DSA:1.20.5.1150 16 56 1.0E-17 T 13-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_18430 48a1b60a7aa21346f9b5c45e94fec7bc 57 Pfam PF01165 Ribosomal protein S21 6 57 1.3E-20 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_18865 ea8adb0f3c71f3ac217394624d3129c1 182 SUPERFAMILY SSF55890 9 176 3.4E-47 T 13-10-2018 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 AP3564_18865 ea8adb0f3c71f3ac217394624d3129c1 182 Gene3D G3DSA:3.30.565.30 61 180 4.3E-35 T 13-10-2018 IPR037100 Sporulation initiation phosphotransferase B, C-terminal domain superfamily AP3564_18865 ea8adb0f3c71f3ac217394624d3129c1 182 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 9 60 3.1E-21 T 13-10-2018 IPR039506 SpoOB, alpha-helical domain AP3564_18865 ea8adb0f3c71f3ac217394624d3129c1 182 Pfam PF14682 Sporulation initiation phospho-transferase B, C-terminal 63 174 2.1E-27 T 13-10-2018 IPR016122 Sporulation initiation phosphotransferase B, C-terminal AP3564_18865 ea8adb0f3c71f3ac217394624d3129c1 182 Gene3D G3DSA:1.10.287.130 1 60 1.5E-25 T 13-10-2018 AP3564_18865 ea8adb0f3c71f3ac217394624d3129c1 182 SMART SM01317 62 177 4.5E-28 T 13-10-2018 IPR016122 Sporulation initiation phosphotransferase B, C-terminal AP3564_05600 116263741e7fc2e9e467d93f70e7018e 364 Gene3D G3DSA:3.40.50.1010 159 294 3.6E-53 T 13-10-2018 AP3564_05600 116263741e7fc2e9e467d93f70e7018e 364 SMART SM00670 164 271 2.2E-13 T 13-10-2018 IPR002716 PIN domain AP3564_05600 116263741e7fc2e9e467d93f70e7018e 364 SUPERFAMILY SSF88723 166 292 3.49E-24 T 13-10-2018 IPR029060 PIN-like domain superfamily AP3564_08375 90051a68bd2a3f32f8b81e08bb7e24ff 836 Hamap MF_01382 Protein translocase subunit SecA [secA]. 4 782 19.92 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AP3564_08375 90051a68bd2a3f32f8b81e08bb7e24ff 836 Pfam PF07517 SecA DEAD-like domain 6 382 5.1E-128 T 13-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 AP3564_08375 90051a68bd2a3f32f8b81e08bb7e24ff 836 Pfam PF07516 SecA Wing and Scaffold domain 568 779 5.2E-71 T 13-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 AP3564_08375 90051a68bd2a3f32f8b81e08bb7e24ff 836 ProSitePatterns PS01312 SecA family signature. 480 495 - T 13-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 AP3564_08375 90051a68bd2a3f32f8b81e08bb7e24ff 836 SMART SM00957 5 382 5.2E-287 T 13-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 AP3564_08375 90051a68bd2a3f32f8b81e08bb7e24ff 836 SUPERFAMILY SSF52540 6 395 3.19E-84 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_08375 90051a68bd2a3f32f8b81e08bb7e24ff 836 SUPERFAMILY SSF52540 397 569 6.81E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_08375 90051a68bd2a3f32f8b81e08bb7e24ff 836 Pfam PF01043 SecA preprotein cross-linking domain 230 338 4.7E-44 T 13-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 AP3564_08375 90051a68bd2a3f32f8b81e08bb7e24ff 836 Gene3D G3DSA:1.10.3060.10 571 774 0.0 T 13-10-2018 AP3564_08375 90051a68bd2a3f32f8b81e08bb7e24ff 836 SUPERFAMILY SSF81767 225 348 1.96E-49 T 13-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 AP3564_08375 90051a68bd2a3f32f8b81e08bb7e24ff 836 Gene3D G3DSA:3.40.50.300 14 396 0.0 T 13-10-2018 AP3564_08375 90051a68bd2a3f32f8b81e08bb7e24ff 836 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 26 496 1.5E-246 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AP3564_08375 90051a68bd2a3f32f8b81e08bb7e24ff 836 PRINTS PR00906 SecA protein signature 168 188 7.9E-70 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AP3564_08375 90051a68bd2a3f32f8b81e08bb7e24ff 836 PRINTS PR00906 SecA protein signature 61 85 7.9E-70 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AP3564_08375 90051a68bd2a3f32f8b81e08bb7e24ff 836 PRINTS PR00906 SecA protein signature 99 113 7.9E-70 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AP3564_08375 90051a68bd2a3f32f8b81e08bb7e24ff 836 PRINTS PR00906 SecA protein signature 356 373 7.9E-70 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AP3564_08375 90051a68bd2a3f32f8b81e08bb7e24ff 836 PRINTS PR00906 SecA protein signature 393 406 7.9E-70 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AP3564_08375 90051a68bd2a3f32f8b81e08bb7e24ff 836 PRINTS PR00906 SecA protein signature 115 125 7.9E-70 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AP3564_08375 90051a68bd2a3f32f8b81e08bb7e24ff 836 PRINTS PR00906 SecA protein signature 319 341 7.9E-70 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AP3564_08375 90051a68bd2a3f32f8b81e08bb7e24ff 836 Gene3D G3DSA:3.40.50.300 397 570 0.0 T 13-10-2018 AP3564_08375 90051a68bd2a3f32f8b81e08bb7e24ff 836 SMART SM00958 226 338 3.5E-71 T 13-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 AP3564_08375 90051a68bd2a3f32f8b81e08bb7e24ff 836 Gene3D G3DSA:3.90.1440.10 227 348 0.0 T 13-10-2018 AP3564_08375 90051a68bd2a3f32f8b81e08bb7e24ff 836 Gene3D G3DSA:3.10.450.50 775 836 3.8E-9 T 13-10-2018 AP3564_08375 90051a68bd2a3f32f8b81e08bb7e24ff 836 SUPERFAMILY SSF81886 571 826 1.44E-83 T 13-10-2018 IPR036266 SecA, Wing/Scaffold superfamily AP3564_08375 90051a68bd2a3f32f8b81e08bb7e24ff 836 Pfam PF02810 SEC-C motif 818 836 5.4E-10 T 13-10-2018 IPR004027 SEC-C motif AP3564_08375 90051a68bd2a3f32f8b81e08bb7e24ff 836 Gene3D G3DSA:1.10.1200.230 621 706 0.0 T 13-10-2018 AP3564_08270 d84308ccfbdfb140e358b56ed7d27aa0 284 Gene3D G3DSA:3.40.50.720 1 189 1.5E-74 T 13-10-2018 AP3564_08270 d84308ccfbdfb140e358b56ed7d27aa0 284 SUPERFAMILY SSF51735 1 183 5.26E-62 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_08270 d84308ccfbdfb140e358b56ed7d27aa0 284 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 5 184 3.6E-69 T 13-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AP3564_08270 d84308ccfbdfb140e358b56ed7d27aa0 284 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 187 283 6.0E-36 T 13-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AP3564_08270 d84308ccfbdfb140e358b56ed7d27aa0 284 Gene3D G3DSA:1.10.1040.10 190 284 1.5E-34 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AP3564_08270 d84308ccfbdfb140e358b56ed7d27aa0 284 SUPERFAMILY SSF48179 186 284 7.48E-34 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AP3564_08270 d84308ccfbdfb140e358b56ed7d27aa0 284 PIRSF PIRSF000105 1 284 4.2E-99 T 13-10-2018 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 AP3564_18425 e7ae61f79802469d641989cc805b44d9 148 SUPERFAMILY SSF89095 1 147 1.83E-46 T 13-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 AP3564_18425 e7ae61f79802469d641989cc805b44d9 148 Gene3D G3DSA:1.10.10.410 92 148 1.3E-26 T 13-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal AP3564_18425 e7ae61f79802469d641989cc805b44d9 148 Pfam PF09424 Yqey-like protein 5 147 4.1E-56 T 13-10-2018 IPR019004 Uncharacterised protein YqeY/AIM41 AP3564_18425 e7ae61f79802469d641989cc805b44d9 148 Gene3D G3DSA:1.10.1510.10 1 91 5.4E-33 T 13-10-2018 AP3564_03900 3df32c476643c917806b705a1c555e8c 179 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 5 175 4.8E-52 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03900 3df32c476643c917806b705a1c555e8c 179 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 137 156 - T 13-10-2018 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03900 3df32c476643c917806b705a1c555e8c 179 Hamap MF_01416 ATP synthase subunit delta [atpD]. 1 177 21.02 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03900 3df32c476643c917806b705a1c555e8c 179 Pfam PF00213 ATP synthase delta (OSCP) subunit 5 175 1.3E-49 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03900 3df32c476643c917806b705a1c555e8c 179 SUPERFAMILY SSF47928 4 103 1.96E-24 T 13-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03900 3df32c476643c917806b705a1c555e8c 179 Gene3D G3DSA:1.10.520.20 4 97 7.4E-14 T 13-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03900 3df32c476643c917806b705a1c555e8c 179 PRINTS PR00125 ATP synthase delta subunit signature 150 168 9.1E-30 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03900 3df32c476643c917806b705a1c555e8c 179 PRINTS PR00125 ATP synthase delta subunit signature 73 84 9.1E-30 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03900 3df32c476643c917806b705a1c555e8c 179 PRINTS PR00125 ATP synthase delta subunit signature 5 24 9.1E-30 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03900 3df32c476643c917806b705a1c555e8c 179 PRINTS PR00125 ATP synthase delta subunit signature 135 150 9.1E-30 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_03900 3df32c476643c917806b705a1c555e8c 179 PRINTS PR00125 ATP synthase delta subunit signature 84 98 9.1E-30 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AP3564_00595 83419378f7cf76710ebbd062607a59db 305 SMART SM01130 9 298 1.2E-128 T 13-10-2018 IPR002220 DapA-like GO:0016829 AP3564_00595 83419378f7cf76710ebbd062607a59db 305 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 9 296 55.451 T 13-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AP3564_00595 83419378f7cf76710ebbd062607a59db 305 PIRSF PIRSF001365 7 304 2.5E-90 T 13-10-2018 IPR002220 DapA-like GO:0016829 AP3564_00595 83419378f7cf76710ebbd062607a59db 305 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 13 296 3.4E-91 T 13-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AP3564_00595 83419378f7cf76710ebbd062607a59db 305 Gene3D G3DSA:3.20.20.70 2 300 6.1E-102 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_00595 83419378f7cf76710ebbd062607a59db 305 PRINTS PR00146 Dihydrodipicolinate synthase signature 43 64 1.5E-24 T 13-10-2018 IPR002220 DapA-like GO:0016829 AP3564_00595 83419378f7cf76710ebbd062607a59db 305 PRINTS PR00146 Dihydrodipicolinate synthase signature 111 127 1.5E-24 T 13-10-2018 IPR002220 DapA-like GO:0016829 AP3564_00595 83419378f7cf76710ebbd062607a59db 305 PRINTS PR00146 Dihydrodipicolinate synthase signature 79 97 1.5E-24 T 13-10-2018 IPR002220 DapA-like GO:0016829 AP3564_00595 83419378f7cf76710ebbd062607a59db 305 PRINTS PR00146 Dihydrodipicolinate synthase signature 136 153 1.5E-24 T 13-10-2018 IPR002220 DapA-like GO:0016829 AP3564_00595 83419378f7cf76710ebbd062607a59db 305 TIGRFAM TIGR02313 HpaI-NOT-DapA: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 10 302 9.9E-156 T 13-10-2018 IPR012691 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase variant GO:0005737|GO:0008840|GO:0019877 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AP3564_00595 83419378f7cf76710ebbd062607a59db 305 Pfam PF00701 Dihydrodipicolinate synthetase family 10 296 3.2E-86 T 13-10-2018 IPR002220 DapA-like GO:0016829 AP3564_00595 83419378f7cf76710ebbd062607a59db 305 SUPERFAMILY SSF51569 8 299 8.48E-98 T 13-10-2018 AP3564_16205 9ae62e13e1ea4d8e6204045829aa14d2 333 SUPERFAMILY SSF48029 113 324 1.01E-70 T 13-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical AP3564_16205 9ae62e13e1ea4d8e6204045829aa14d2 333 SUPERFAMILY SSF48029 5 99 5.75E-22 T 13-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical AP3564_16205 9ae62e13e1ea4d8e6204045829aa14d2 333 Gene3D G3DSA:1.10.220.30 102 193 9.8E-36 T 13-10-2018 AP3564_16205 9ae62e13e1ea4d8e6204045829aa14d2 333 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 1 333 2.1E-151 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AP3564_16205 9ae62e13e1ea4d8e6204045829aa14d2 333 Gene3D G3DSA:1.10.220.30 194 333 5.6E-52 T 13-10-2018 AP3564_16205 9ae62e13e1ea4d8e6204045829aa14d2 333 Gene3D G3DSA:1.10.220.30 1 83 2.2E-20 T 13-10-2018 AP3564_16205 9ae62e13e1ea4d8e6204045829aa14d2 333 PIRSF PIRSF003161 1 333 2.4E-127 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AP3564_16205 9ae62e13e1ea4d8e6204045829aa14d2 333 Pfam PF14842 FliG N-terminal domain 3 106 9.3E-38 T 13-10-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain AP3564_16205 9ae62e13e1ea4d8e6204045829aa14d2 333 Pfam PF01706 FliG C-terminal domain 216 323 5.8E-45 T 13-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal AP3564_16205 9ae62e13e1ea4d8e6204045829aa14d2 333 PRINTS PR00954 Flagellar motor switch protein FliG signature 33 59 7.9E-81 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AP3564_16205 9ae62e13e1ea4d8e6204045829aa14d2 333 PRINTS PR00954 Flagellar motor switch protein FliG signature 271 297 7.9E-81 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AP3564_16205 9ae62e13e1ea4d8e6204045829aa14d2 333 PRINTS PR00954 Flagellar motor switch protein FliG signature 113 136 7.9E-81 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AP3564_16205 9ae62e13e1ea4d8e6204045829aa14d2 333 PRINTS PR00954 Flagellar motor switch protein FliG signature 194 219 7.9E-81 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AP3564_16205 9ae62e13e1ea4d8e6204045829aa14d2 333 PRINTS PR00954 Flagellar motor switch protein FliG signature 225 245 7.9E-81 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AP3564_16205 9ae62e13e1ea4d8e6204045829aa14d2 333 PRINTS PR00954 Flagellar motor switch protein FliG signature 4 20 7.9E-81 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AP3564_16205 9ae62e13e1ea4d8e6204045829aa14d2 333 PRINTS PR00954 Flagellar motor switch protein FliG signature 247 267 7.9E-81 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AP3564_16205 9ae62e13e1ea4d8e6204045829aa14d2 333 Pfam PF14841 FliG middle domain 114 188 9.7E-32 T 13-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain AP3564_17015 c55e2419056c99f9867aa0d40165941b 277 PIRSF PIRSF000388 1 264 2.0E-112 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AP3564_17015 c55e2419056c99f9867aa0d40165941b 277 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 1 262 1.2E-116 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AP3564_17015 c55e2419056c99f9867aa0d40165941b 277 Gene3D G3DSA:3.20.20.60 2 272 4.1E-117 T 13-10-2018 AP3564_17015 c55e2419056c99f9867aa0d40165941b 277 Pfam PF02548 Ketopantoate hydroxymethyltransferase 6 256 4.4E-113 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AP3564_17015 c55e2419056c99f9867aa0d40165941b 277 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 2 261 42.518 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AP3564_17015 c55e2419056c99f9867aa0d40165941b 277 SUPERFAMILY SSF51621 3 261 1.26E-106 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AP3564_19565 eef38d690056685d71b458c7c8480f34 393 Pfam PF01609 Transposase DDE domain 141 344 2.8E-20 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_19565 eef38d690056685d71b458c7c8480f34 393 Gene3D G3DSA:3.90.350.10 209 327 2.9E-5 T 13-10-2018 IPR014736 Transposase, Tn5-like, core AP3564_19565 eef38d690056685d71b458c7c8480f34 393 SUPERFAMILY SSF53098 24 344 4.1E-22 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_04375 31c6cfaf1797e1118e56d2e8391119a6 461 Gene3D G3DSA:2.40.50.100 1 87 9.5E-23 T 13-10-2018 AP3564_04375 31c6cfaf1797e1118e56d2e8391119a6 461 Gene3D G3DSA:4.10.320.10 102 152 2.0E-12 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AP3564_04375 31c6cfaf1797e1118e56d2e8391119a6 461 Gene3D G3DSA:4.10.320.10 155 206 5.7E-16 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AP3564_04375 31c6cfaf1797e1118e56d2e8391119a6 461 Pfam PF02817 e3 binding domain 166 201 5.8E-13 T 13-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 AP3564_04375 31c6cfaf1797e1118e56d2e8391119a6 461 Pfam PF02817 e3 binding domain 115 149 1.4E-10 T 13-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 AP3564_04375 31c6cfaf1797e1118e56d2e8391119a6 461 SUPERFAMILY SSF51230 1 84 1.93E-23 T 13-10-2018 IPR011053 Single hybrid motif AP3564_04375 31c6cfaf1797e1118e56d2e8391119a6 461 SUPERFAMILY SSF47005 161 205 1.96E-11 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AP3564_04375 31c6cfaf1797e1118e56d2e8391119a6 461 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 13-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AP3564_04375 31c6cfaf1797e1118e56d2e8391119a6 461 SUPERFAMILY SSF52777 230 459 2.45E-84 T 13-10-2018 AP3564_04375 31c6cfaf1797e1118e56d2e8391119a6 461 Pfam PF00364 Biotin-requiring enzyme 4 76 7.9E-20 T 13-10-2018 IPR000089 Biotin/lipoyl attachment AP3564_04375 31c6cfaf1797e1118e56d2e8391119a6 461 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 232 459 3.3E-86 T 13-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 AP3564_04375 31c6cfaf1797e1118e56d2e8391119a6 461 Gene3D G3DSA:3.30.559.10 214 458 3.4E-89 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 AP3564_04375 31c6cfaf1797e1118e56d2e8391119a6 461 SUPERFAMILY SSF47005 112 152 2.09E-9 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AP3564_15795 bae33b788f59a9774fb57eff5953795a 318 Pfam PF01715 IPP transferase 41 287 6.9E-90 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 AP3564_15795 bae33b788f59a9774fb57eff5953795a 318 SUPERFAMILY SSF52540 8 155 4.09E-22 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_15795 bae33b788f59a9774fb57eff5953795a 318 Gene3D G3DSA:1.10.20.140 115 188 1.1E-110 T 13-10-2018 AP3564_15795 bae33b788f59a9774fb57eff5953795a 318 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 8 307 31.353 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 AP3564_15795 bae33b788f59a9774fb57eff5953795a 318 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 9 294 2.1E-115 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 AP3564_15795 bae33b788f59a9774fb57eff5953795a 318 Gene3D G3DSA:3.40.50.300 12 291 1.1E-110 T 13-10-2018 AP3564_09880 a54d4bd2045c073260101b09ecad7cd4 355 Gene3D G3DSA:3.40.190.10 52 320 6.6E-141 T 13-10-2018 AP3564_09880 a54d4bd2045c073260101b09ecad7cd4 355 SUPERFAMILY SSF53850 45 353 5.12E-94 T 13-10-2018 AP3564_09880 a54d4bd2045c073260101b09ecad7cd4 355 Gene3D G3DSA:3.40.190.10 139 350 6.6E-141 T 13-10-2018 AP3564_09880 a54d4bd2045c073260101b09ecad7cd4 355 Pfam PF13531 Bacterial extracellular solute-binding protein 61 305 1.0E-44 T 13-10-2018 AP3564_09880 a54d4bd2045c073260101b09ecad7cd4 355 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 45 351 5.2E-154 T 13-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 AP3564_09880 a54d4bd2045c073260101b09ecad7cd4 355 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 170 178 - T 13-10-2018 IPR034408 Sulphate/thiosulphate-binding site GO:1901681 AP3564_09880 a54d4bd2045c073260101b09ecad7cd4 355 ProSitePatterns PS00401 Prokaryotic sulfate-binding proteins signature 1. 73 85 - T 13-10-2018 IPR000957 Sulphate/thiosulphate-binding, conserved site AP3564_07660 c6080e549867e598fe70bc94bdc9cb44 458 SUPERFAMILY SSF52540 128 430 6.74E-33 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_07660 c6080e549867e598fe70bc94bdc9cb44 458 Pfam PF04851 Type III restriction enzyme, res subunit 116 264 1.0E-8 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AP3564_07660 c6080e549867e598fe70bc94bdc9cb44 458 Gene3D G3DSA:3.40.50.300 118 279 2.7E-17 T 13-10-2018 AP3564_07660 c6080e549867e598fe70bc94bdc9cb44 458 Gene3D G3DSA:3.40.50.300 300 435 2.7E-21 T 13-10-2018 AP3564_07660 c6080e549867e598fe70bc94bdc9cb44 458 SMART SM00487 113 293 6.1E-18 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AP3564_07660 c6080e549867e598fe70bc94bdc9cb44 458 Pfam PF00271 Helicase conserved C-terminal domain 318 416 1.8E-9 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_07660 c6080e549867e598fe70bc94bdc9cb44 458 SMART SM00490 337 418 3.0E-9 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_08785 d712003f33496386880e6c4883948505 511 SUPERFAMILY SSF64158 77 310 2.88E-94 T 13-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AP3564_08785 d712003f33496386880e6c4883948505 511 Gene3D G3DSA:3.40.1450.10 77 312 5.3E-240 T 13-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AP3564_08785 d712003f33496386880e6c4883948505 511 Gene3D G3DSA:3.40.720.10 5 509 5.3E-240 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 AP3564_08785 d712003f33496386880e6c4883948505 511 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 4 509 3.2E-211 T 13-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AP3564_08785 d712003f33496386880e6c4883948505 511 Pfam PF01676 Metalloenzyme superfamily 4 499 6.0E-81 T 13-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 AP3564_08785 d712003f33496386880e6c4883948505 511 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 82 299 3.5E-86 T 13-10-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AP3564_08785 d712003f33496386880e6c4883948505 511 SUPERFAMILY SSF53649 3 509 5.89E-78 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 AP3564_08785 d712003f33496386880e6c4883948505 511 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 4 510 50.397 T 13-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AP3564_08785 d712003f33496386880e6c4883948505 511 PIRSF PIRSF001492 1 511 2.0E-208 T 13-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AP3564_10560 03b3897997bcf2f9eb093157cf50b09e 103 Gene3D G3DSA:1.10.10.60 7 87 8.0E-14 T 13-10-2018 AP3564_10560 03b3897997bcf2f9eb093157cf50b09e 103 Pfam PF01527 Transposase 2 81 1.6E-15 T 13-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AP3564_10560 03b3897997bcf2f9eb093157cf50b09e 103 SUPERFAMILY SSF46689 1 93 1.97E-23 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_18180 fb70ca9b4a732d75b5fa00b34ddd2613 313 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 28 309 2.1E-80 T 13-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 AP3564_18180 fb70ca9b4a732d75b5fa00b34ddd2613 313 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 106 310 5.1E-20 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AP3564_18180 fb70ca9b4a732d75b5fa00b34ddd2613 313 Gene3D G3DSA:1.10.3720.10 82 312 2.5E-37 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_18180 fb70ca9b4a732d75b5fa00b34ddd2613 313 SUPERFAMILY SSF161098 35 306 1.31E-34 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_11705 e0551fe582d3d3ad9bbc9dc483173aeb 706 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 617 691 3.1E-24 T 13-10-2018 IPR019489 Clp ATPase, C-terminal AP3564_11705 e0551fe582d3d3ad9bbc9dc483173aeb 706 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 526 544 4.2E-37 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 AP3564_11705 e0551fe582d3d3ad9bbc9dc483173aeb 706 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 452 470 4.2E-37 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 AP3564_11705 e0551fe582d3d3ad9bbc9dc483173aeb 706 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 559 573 4.2E-37 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 AP3564_11705 e0551fe582d3d3ad9bbc9dc483173aeb 706 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 497 515 4.2E-37 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 AP3564_11705 e0551fe582d3d3ad9bbc9dc483173aeb 706 Gene3D G3DSA:1.10.8.60 617 705 1.6E-26 T 13-10-2018 AP3564_11705 e0551fe582d3d3ad9bbc9dc483173aeb 706 Gene3D G3DSA:3.40.50.300 378 616 2.1E-91 T 13-10-2018 AP3564_11705 e0551fe582d3d3ad9bbc9dc483173aeb 706 Pfam PF07724 AAA domain (Cdc48 subfamily) 447 611 5.8E-52 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AP3564_11705 e0551fe582d3d3ad9bbc9dc483173aeb 706 Pfam PF02151 UvrB/uvrC motif 336 370 2.8E-5 T 13-10-2018 IPR001943 UVR domain GO:0005515 AP3564_11705 e0551fe582d3d3ad9bbc9dc483173aeb 706 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 216 228 - T 13-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 AP3564_11705 e0551fe582d3d3ad9bbc9dc483173aeb 706 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 482 500 - T 13-10-2018 IPR028299 ClpA/B, conserved site 2 AP3564_11705 e0551fe582d3d3ad9bbc9dc483173aeb 706 SMART SM00382 448 618 7.4E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_11705 e0551fe582d3d3ad9bbc9dc483173aeb 706 SMART SM00382 121 265 7.1E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_11705 e0551fe582d3d3ad9bbc9dc483173aeb 706 SUPERFAMILY SSF52540 82 372 6.17E-69 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_11705 e0551fe582d3d3ad9bbc9dc483173aeb 706 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 126 259 6.1E-13 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AP3564_11705 e0551fe582d3d3ad9bbc9dc483173aeb 706 Gene3D G3DSA:3.40.50.300 74 263 3.2E-67 T 13-10-2018 AP3564_11705 e0551fe582d3d3ad9bbc9dc483173aeb 706 Gene3D G3DSA:1.10.8.60 264 349 7.0E-30 T 13-10-2018 AP3564_11705 e0551fe582d3d3ad9bbc9dc483173aeb 706 SUPERFAMILY SSF52540 397 698 2.21E-80 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_11705 e0551fe582d3d3ad9bbc9dc483173aeb 706 SMART SM01086 617 704 1.9E-31 T 13-10-2018 IPR019489 Clp ATPase, C-terminal AP3564_06410 1bcb7bb4831f0e193f7af72e30649415 302 Gene3D G3DSA:3.40.50.2300 2 286 8.1E-106 T 13-10-2018 AP3564_06410 1bcb7bb4831f0e193f7af72e30649415 302 SUPERFAMILY SSF53822 2 302 1.85E-75 T 13-10-2018 IPR028082 Periplasmic binding protein-like I AP3564_06410 1bcb7bb4831f0e193f7af72e30649415 302 Pfam PF13407 Periplasmic binding protein domain 3 262 1.8E-63 T 13-10-2018 IPR025997 Periplasmic binding protein AP3564_06410 1bcb7bb4831f0e193f7af72e30649415 302 Gene3D G3DSA:3.40.50.2300 103 302 8.1E-106 T 13-10-2018 AP3564_17030 3ef4bb6000f88a71b5408b47bd2a3afe 380 SUPERFAMILY SSF53756 9 375 7.85E-88 T 13-10-2018 AP3564_17030 3ef4bb6000f88a71b5408b47bd2a3afe 380 TIGRFAM TIGR03999 thiol_BshA: N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA 4 374 3.8E-174 T 13-10-2018 IPR023881 N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA GO:0016757|GO:0071793 AP3564_17030 3ef4bb6000f88a71b5408b47bd2a3afe 380 Pfam PF00534 Glycosyl transferases group 1 190 350 1.3E-42 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 AP3564_17030 3ef4bb6000f88a71b5408b47bd2a3afe 380 Pfam PF13439 Glycosyltransferase Family 4 14 178 5.0E-25 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AP3564_17030 3ef4bb6000f88a71b5408b47bd2a3afe 380 Gene3D G3DSA:3.40.50.2000 176 357 3.0E-121 T 13-10-2018 AP3564_17030 3ef4bb6000f88a71b5408b47bd2a3afe 380 Gene3D G3DSA:3.40.50.2000 23 370 3.0E-121 T 13-10-2018 AP3564_13440 9d1478e3ce1d3f5bfd53178631bffbaa 510 Pfam PF02541 Ppx/GppA phosphatase family 29 303 3.4E-53 T 13-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 AP3564_13440 9d1478e3ce1d3f5bfd53178631bffbaa 510 SUPERFAMILY SSF53067 131 303 4.4E-39 T 13-10-2018 AP3564_13440 9d1478e3ce1d3f5bfd53178631bffbaa 510 Gene3D G3DSA:3.30.420.40 1 110 8.3E-27 T 13-10-2018 AP3564_13440 9d1478e3ce1d3f5bfd53178631bffbaa 510 SUPERFAMILY SSF53067 6 126 1.66E-31 T 13-10-2018 AP3564_13440 9d1478e3ce1d3f5bfd53178631bffbaa 510 Gene3D G3DSA:1.10.3210.10 313 508 7.6E-28 T 13-10-2018 AP3564_13440 9d1478e3ce1d3f5bfd53178631bffbaa 510 Gene3D G3DSA:3.30.420.150 111 301 1.1E-56 T 13-10-2018 AP3564_13440 9d1478e3ce1d3f5bfd53178631bffbaa 510 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 5 302 6.0E-93 T 13-10-2018 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 AP3564_13440 9d1478e3ce1d3f5bfd53178631bffbaa 510 SUPERFAMILY SSF109604 319 506 2.92E-15 T 13-10-2018 AP3564_07380 9cb14d9a382beb8795ed0afeff749ec3 253 Gene3D G3DSA:3.40.50.300 1 246 4.0E-67 T 13-10-2018 AP3564_07380 9cb14d9a382beb8795ed0afeff749ec3 253 SUPERFAMILY SSF52540 3 232 7.74E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_07380 9cb14d9a382beb8795ed0afeff749ec3 253 SMART SM00382 30 215 8.3E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_07380 9cb14d9a382beb8795ed0afeff749ec3 253 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_07380 9cb14d9a382beb8795ed0afeff749ec3 253 Pfam PF00005 ABC transporter 23 166 2.0E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_04460 61bd931d55e0eb24293bfe30a056b85d 231 SMART SM00448 2 112 2.7E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_04460 61bd931d55e0eb24293bfe30a056b85d 231 SUPERFAMILY SSF46894 133 222 1.05E-22 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AP3564_04460 61bd931d55e0eb24293bfe30a056b85d 231 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 222 1.0E-21 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AP3564_04460 61bd931d55e0eb24293bfe30a056b85d 231 Gene3D G3DSA:1.10.10.10 131 229 1.7E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_04460 61bd931d55e0eb24293bfe30a056b85d 231 SUPERFAMILY SSF52172 3 126 2.42E-34 T 13-10-2018 IPR011006 CheY-like superfamily AP3564_04460 61bd931d55e0eb24293bfe30a056b85d 231 SMART SM00862 148 223 1.9E-16 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AP3564_04460 61bd931d55e0eb24293bfe30a056b85d 231 Pfam PF00072 Response regulator receiver domain 4 113 2.1E-22 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_04460 61bd931d55e0eb24293bfe30a056b85d 231 Gene3D G3DSA:3.40.50.2300 2 130 1.3E-29 T 13-10-2018 AP3564_05880 850163bc5117f0261e9edb8d874bbe85 291 SMART SM00382 32 223 1.9E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_05880 850163bc5117f0261e9edb8d874bbe85 291 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_05880 850163bc5117f0261e9edb8d874bbe85 291 TIGRFAM TIGR04521 ECF_ATPase_2: energy-coupling factor transporter ATPase 3 280 1.7E-121 T 13-10-2018 IPR030946 Energy-coupling factor transporter ATP-binding protein EcfA2 AP3564_05880 850163bc5117f0261e9edb8d874bbe85 291 Pfam PF00005 ABC transporter 25 174 7.7E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_05880 850163bc5117f0261e9edb8d874bbe85 291 Gene3D G3DSA:3.40.50.300 1 289 8.9E-75 T 13-10-2018 AP3564_05880 850163bc5117f0261e9edb8d874bbe85 291 SUPERFAMILY SSF52540 1 235 2.25E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_11295 663d0a5bf8c9b354735dbd439599b732 592 Gene3D G3DSA:2.30.40.10 13 357 3.6E-111 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AP3564_11295 663d0a5bf8c9b354735dbd439599b732 592 SUPERFAMILY SSF51338 12 369 4.84E-20 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AP3564_11295 663d0a5bf8c9b354735dbd439599b732 592 Gene3D G3DSA:3.20.20.140 76 319 3.6E-111 T 13-10-2018 AP3564_11295 663d0a5bf8c9b354735dbd439599b732 592 Pfam PF01979 Amidohydrolase family 72 356 2.6E-19 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AP3564_11295 663d0a5bf8c9b354735dbd439599b732 592 SUPERFAMILY SSF51556 76 322 1.06E-17 T 13-10-2018 IPR032466 Metal-dependent hydrolase AP3564_11295 663d0a5bf8c9b354735dbd439599b732 592 Pfam PF13382 Adenine deaminase C-terminal domain 413 577 9.8E-35 T 13-10-2018 IPR026912 Adenine deaminase C-terminal domain KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 AP3564_15705 ec30f7e43ed2ce01bc44dd74a5f5f783 266 Pfam PF00082 Subtilase family 69 252 1.0E-30 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AP3564_15705 ec30f7e43ed2ce01bc44dd74a5f5f783 266 SUPERFAMILY SSF52743 65 266 6.02E-52 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 AP3564_15705 ec30f7e43ed2ce01bc44dd74a5f5f783 266 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 73 84 - T 13-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site AP3564_15705 ec30f7e43ed2ce01bc44dd74a5f5f783 266 PRINTS PR00723 Subtilisin serine protease family (S8) signature 109 122 2.1E-7 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related AP3564_15705 ec30f7e43ed2ce01bc44dd74a5f5f783 266 PRINTS PR00723 Subtilisin serine protease family (S8) signature 264 266 2.1E-7 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related AP3564_15705 ec30f7e43ed2ce01bc44dd74a5f5f783 266 PRINTS PR00723 Subtilisin serine protease family (S8) signature 68 87 2.1E-7 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related AP3564_15705 ec30f7e43ed2ce01bc44dd74a5f5f783 266 Gene3D G3DSA:3.40.50.200 32 266 1.2E-53 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 AP3564_15705 ec30f7e43ed2ce01bc44dd74a5f5f783 266 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 113 123 - T 13-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site AP3564_07590 0f23b67977a24fb5f93b72d311ae508f 422 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 73 229 9.3E-19 T 13-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like AP3564_15540 5026942566dacab2aedc41c95c16e3f4 338 Gene3D G3DSA:3.40.50.2300 161 293 7.7E-70 T 13-10-2018 AP3564_15540 5026942566dacab2aedc41c95c16e3f4 338 SUPERFAMILY SSF47413 2 62 3.66E-17 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AP3564_15540 5026942566dacab2aedc41c95c16e3f4 338 Gene3D G3DSA:1.10.260.40 5 62 9.4E-23 T 13-10-2018 AP3564_15540 5026942566dacab2aedc41c95c16e3f4 338 Gene3D G3DSA:3.40.50.2300 66 314 7.7E-70 T 13-10-2018 AP3564_15540 5026942566dacab2aedc41c95c16e3f4 338 Pfam PF00356 Bacterial regulatory proteins, lacI family 5 51 3.2E-19 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AP3564_15540 5026942566dacab2aedc41c95c16e3f4 338 SUPERFAMILY SSF53822 64 334 1.81E-65 T 13-10-2018 IPR028082 Periplasmic binding protein-like I AP3564_15540 5026942566dacab2aedc41c95c16e3f4 338 ProSitePatterns PS00356 LacI-type HTH domain signature. 6 24 - T 13-10-2018 AP3564_15540 5026942566dacab2aedc41c95c16e3f4 338 SMART SM00354 3 74 1.5E-30 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AP3564_15540 5026942566dacab2aedc41c95c16e3f4 338 Pfam PF13377 Periplasmic binding protein-like domain 171 333 2.9E-28 T 13-10-2018 AP3564_04035 7c2e6aeedef32c068498fe73011d9fc2 213 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 3 204 1.1E-56 T 13-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 AP3564_04035 7c2e6aeedef32c068498fe73011d9fc2 213 ProSitePatterns PS00958 Transaldolase active site. 81 98 - T 13-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 AP3564_04035 7c2e6aeedef32c068498fe73011d9fc2 213 Gene3D G3DSA:3.20.20.70 1 212 2.8E-91 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_04035 7c2e6aeedef32c068498fe73011d9fc2 213 Hamap MF_00494 Probable transaldolase [tal]. 1 211 46.084 T 13-10-2018 IPR022999 Transaldolase type 3B, putative GO:0004801 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 AP3564_04035 7c2e6aeedef32c068498fe73011d9fc2 213 SUPERFAMILY SSF51569 1 212 1.99E-76 T 13-10-2018 AP3564_04035 7c2e6aeedef32c068498fe73011d9fc2 213 TIGRFAM TIGR00875 fsa_talC_mipB: fructose-6-phosphate aldolase 1 212 6.6E-103 T 13-10-2018 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 AP3564_04035 7c2e6aeedef32c068498fe73011d9fc2 213 ProSitePatterns PS01054 Transaldolase signature 1. 24 32 - T 13-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 AP3564_00300 1bf7c346563f36b646528c914349b47d 602 Gene3D G3DSA:2.120.10.30 514 602 2.2E-22 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AP3564_00300 1bf7c346563f36b646528c914349b47d 602 Gene3D G3DSA:2.120.10.30 408 513 2.7E-34 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AP3564_00300 1bf7c346563f36b646528c914349b47d 602 SUPERFAMILY SSF101898 29 289 1.49E-48 T 13-10-2018 AP3564_00300 1bf7c346563f36b646528c914349b47d 602 SUPERFAMILY SSF101898 313 598 4.18E-40 T 13-10-2018 AP3564_00300 1bf7c346563f36b646528c914349b47d 602 Pfam PF17170 6-bladed beta-propeller 182 279 4.5E-11 T 13-10-2018 AP3564_00300 1bf7c346563f36b646528c914349b47d 602 Pfam PF01436 NHL repeat 417 444 7.3E-10 T 13-10-2018 IPR001258 NHL repeat GO:0005515 AP3564_00300 1bf7c346563f36b646528c914349b47d 602 Pfam PF01436 NHL repeat 373 397 1.4E-4 T 13-10-2018 IPR001258 NHL repeat GO:0005515 AP3564_00300 1bf7c346563f36b646528c914349b47d 602 Pfam PF01436 NHL repeat 124 151 2.7E-5 T 13-10-2018 IPR001258 NHL repeat GO:0005515 AP3564_00300 1bf7c346563f36b646528c914349b47d 602 Pfam PF01436 NHL repeat 77 104 9.7E-8 T 13-10-2018 IPR001258 NHL repeat GO:0005515 AP3564_00300 1bf7c346563f36b646528c914349b47d 602 Gene3D G3DSA:2.120.10.30 6 117 2.0E-23 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AP3564_00300 1bf7c346563f36b646528c914349b47d 602 Gene3D G3DSA:2.120.10.30 118 209 2.0E-30 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AP3564_00300 1bf7c346563f36b646528c914349b47d 602 Gene3D G3DSA:2.120.10.30 263 407 4.0E-33 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AP3564_00300 1bf7c346563f36b646528c914349b47d 602 Gene3D G3DSA:2.120.10.30 210 262 7.3E-11 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AP3564_11280 666c57c94eb23b169b2ba55d641f6248 527 Gene3D G3DSA:3.40.50.12780 8 418 9.9E-120 T 13-10-2018 AP3564_11280 666c57c94eb23b169b2ba55d641f6248 527 Pfam PF00501 AMP-binding enzyme 24 425 4.2E-91 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AP3564_11280 666c57c94eb23b169b2ba55d641f6248 527 SUPERFAMILY SSF56801 10 523 2.49E-145 T 13-10-2018 AP3564_11280 666c57c94eb23b169b2ba55d641f6248 527 Pfam PF13193 AMP-binding enzyme C-terminal domain 434 511 2.0E-20 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AP3564_11280 666c57c94eb23b169b2ba55d641f6248 527 Gene3D G3DSA:3.30.300.310 421 526 2.0E-31 T 13-10-2018 AP3564_11280 666c57c94eb23b169b2ba55d641f6248 527 TIGRFAM TIGR02262 benz_CoA_lig: benzoate-CoA ligase family 10 519 3.1E-186 T 13-10-2018 IPR011957 Benzoate-CoA ligase family GO:0005524|GO:0016405 AP3564_17130 1ecfbc26aece66d138d7ca8e4f916ef9 366 SUPERFAMILY SSF55021 289 351 2.56E-8 T 13-10-2018 AP3564_17130 1ecfbc26aece66d138d7ca8e4f916ef9 366 Gene3D G3DSA:3.40.50.720 1 180 3.1E-55 T 13-10-2018 AP3564_17130 1ecfbc26aece66d138d7ca8e4f916ef9 366 Gene3D G3DSA:1.10.3660.10 181 295 1.1E-35 T 13-10-2018 AP3564_17130 1ecfbc26aece66d138d7ca8e4f916ef9 366 SUPERFAMILY SSF51735 3 170 3.24E-43 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_17130 1ecfbc26aece66d138d7ca8e4f916ef9 366 SUPERFAMILY SSF48179 174 284 7.14E-34 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AP3564_17130 1ecfbc26aece66d138d7ca8e4f916ef9 366 Pfam PF01842 ACT domain 297 337 2.0E-6 T 13-10-2018 IPR002912 ACT domain AP3564_17130 1ecfbc26aece66d138d7ca8e4f916ef9 366 Pfam PF02153 Prephenate dehydrogenase 16 274 9.7E-87 T 13-10-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 AP3564_17130 1ecfbc26aece66d138d7ca8e4f916ef9 366 Gene3D G3DSA:3.30.70.260 296 360 2.7E-5 T 13-10-2018 AP3564_07485 7374a20be8d2f35383625a5af99a9317 326 TIGRFAM TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 13 326 3.1E-122 T 13-10-2018 IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y GO:0004739|GO:0006086|GO:0043231 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-70268 AP3564_07485 7374a20be8d2f35383625a5af99a9317 326 Gene3D G3DSA:3.40.50.970 2 326 2.1E-140 T 13-10-2018 AP3564_07485 7374a20be8d2f35383625a5af99a9317 326 Pfam PF00676 Dehydrogenase E1 component 21 317 4.5E-95 T 13-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 AP3564_07485 7374a20be8d2f35383625a5af99a9317 326 SUPERFAMILY SSF52518 4 326 1.55E-112 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold AP3564_09225 bffbb9288a73ba1c66b1b37940a02d1f 158 PIRSF PIRSF019239 1 158 3.2E-47 T 13-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 AP3564_09225 bffbb9288a73ba1c66b1b37940a02d1f 158 Pfam PF01899 Na+/H+ ion antiporter subunit 9 156 9.7E-44 T 13-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 AP3564_17335 ec362efc34171b0190787bc672a09c3f 213 Pfam PF01476 LysM domain 163 208 4.9E-12 T 13-10-2018 IPR018392 LysM domain AP3564_17335 ec362efc34171b0190787bc672a09c3f 213 SUPERFAMILY SSF54106 161 208 6.02E-9 T 13-10-2018 AP3564_17335 ec362efc34171b0190787bc672a09c3f 213 SMART SM00257 162 208 5.1E-13 T 13-10-2018 IPR018392 LysM domain AP3564_17335 ec362efc34171b0190787bc672a09c3f 213 Gene3D G3DSA:3.10.350.10 147 213 1.7E-14 T 13-10-2018 IPR036779 LysM domain superfamily AP3564_15950 2f2ed30712da39349e96cd7bfe4a471f 86 Pfam PF05239 PRC-barrel domain 1 78 7.4E-16 T 13-10-2018 IPR027275 PRC-barrel domain AP3564_15950 2f2ed30712da39349e96cd7bfe4a471f 86 Gene3D G3DSA:2.30.30.240 1 79 3.7E-10 T 13-10-2018 AP3564_15950 2f2ed30712da39349e96cd7bfe4a471f 86 TIGRFAM TIGR02888 spore_YlmC_YmxH: sporulation protein, YlmC/YmxH family 2 76 8.8E-30 T 13-10-2018 IPR014238 Sporulation protein YlmC/YmxH AP3564_15950 2f2ed30712da39349e96cd7bfe4a471f 86 SUPERFAMILY SSF50346 1 75 1.26E-12 T 13-10-2018 IPR011033 PRC-barrel-like superfamily AP3564_09835 8ffb38ba8635c2bed135ed765ec265dd 1135 Gene3D G3DSA:3.40.50.300 898 1132 1.5E-30 T 13-10-2018 AP3564_09835 8ffb38ba8635c2bed135ed765ec265dd 1135 Pfam PF13555 P-loop containing region of AAA domain 19 62 1.1E-7 T 13-10-2018 AP3564_09835 8ffb38ba8635c2bed135ed765ec265dd 1135 SUPERFAMILY SSF52540 21 1117 1.52E-29 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_09835 8ffb38ba8635c2bed135ed765ec265dd 1135 Gene3D G3DSA:3.40.50.300 1 237 6.9E-40 T 13-10-2018 AP3564_09835 8ffb38ba8635c2bed135ed765ec265dd 1135 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1007 1090 7.7E-15 T 13-10-2018 AP3564_01660 c8f10008681705ac2574221d36d04b54 514 Pfam PF05683 Fumarase C-terminus 289 496 3.5E-62 T 13-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AP3564_01660 c8f10008681705ac2574221d36d04b54 514 Pfam PF05681 Fumarate hydratase (Fumerase) 6 281 5.7E-74 T 13-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 AP3564_01660 c8f10008681705ac2574221d36d04b54 514 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 333 495 1.5E-51 T 13-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AP3564_01660 c8f10008681705ac2574221d36d04b54 514 SUPERFAMILY SSF117457 325 495 6.15E-53 T 13-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 AP3564_01660 c8f10008681705ac2574221d36d04b54 514 PIRSF PIRSF001394 1 513 5.0E-205 T 13-10-2018 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 AP3564_01660 c8f10008681705ac2574221d36d04b54 514 Gene3D G3DSA:3.20.130.10 310 496 6.4E-66 T 13-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 AP3564_01660 c8f10008681705ac2574221d36d04b54 514 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 6 279 2.8E-64 T 13-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 AP3564_08815 1aaae32411cc3754862925256802f3eb 157 Hamap MF_00023 SsrA-binding protein [smpB]. 1 155 80.552 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 AP3564_08815 1aaae32411cc3754862925256802f3eb 157 Pfam PF01668 SmpB protein 9 150 3.7E-65 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 AP3564_08815 1aaae32411cc3754862925256802f3eb 157 ProSitePatterns PS01317 SsrA-binding protein. 27 39 - T 13-10-2018 IPR020081 SsrA-binding protein, conserved site AP3564_08815 1aaae32411cc3754862925256802f3eb 157 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 9 122 6.0E-57 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 AP3564_08815 1aaae32411cc3754862925256802f3eb 157 Gene3D G3DSA:2.40.280.10 2 129 4.8E-54 T 13-10-2018 IPR023620 Small protein B AP3564_08815 1aaae32411cc3754862925256802f3eb 157 TIGRFAM TIGR00086 smpB: SsrA-binding protein 9 149 1.6E-61 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 AP3564_08815 1aaae32411cc3754862925256802f3eb 157 SUPERFAMILY SSF74982 3 132 4.05E-56 T 13-10-2018 IPR023620 Small protein B AP3564_08335 07b2fb05eb04aea89943f6e725407072 370 SUPERFAMILY SSF51182 11 358 3.66E-105 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily AP3564_08335 07b2fb05eb04aea89943f6e725407072 370 Pfam PF07883 Cupin domain 270 329 3.8E-11 T 13-10-2018 IPR013096 Cupin 2, conserved barrel AP3564_08335 07b2fb05eb04aea89943f6e725407072 370 Pfam PF07883 Cupin domain 102 169 2.2E-20 T 13-10-2018 IPR013096 Cupin 2, conserved barrel AP3564_08335 07b2fb05eb04aea89943f6e725407072 370 Gene3D G3DSA:2.60.120.10 9 363 1.1E-124 T 13-10-2018 IPR014710 RmlC-like jelly roll fold AP3564_15935 4a94b681cd19d3616c59050024f2c4e5 347 PIRSF PIRSF000148 5 347 2.8E-133 T 13-10-2018 AP3564_15935 4a94b681cd19d3616c59050024f2c4e5 347 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 7 343 7.2E-160 T 13-10-2018 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AP3564_15935 4a94b681cd19d3616c59050024f2c4e5 347 SUPERFAMILY SSF51735 6 158 7.1E-53 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_15935 4a94b681cd19d3616c59050024f2c4e5 347 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 5 342 39.009 T 13-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AP3564_15935 4a94b681cd19d3616c59050024f2c4e5 347 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 238 252 - T 13-10-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AP3564_15935 4a94b681cd19d3616c59050024f2c4e5 347 Gene3D G3DSA:3.30.360.10 129 325 7.7E-145 T 13-10-2018 AP3564_15935 4a94b681cd19d3616c59050024f2c4e5 347 SUPERFAMILY SSF55347 130 329 4.76E-75 T 13-10-2018 AP3564_15935 4a94b681cd19d3616c59050024f2c4e5 347 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 8 120 8.2E-37 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AP3564_15935 4a94b681cd19d3616c59050024f2c4e5 347 SMART SM00859 7 122 6.9E-47 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AP3564_15935 4a94b681cd19d3616c59050024f2c4e5 347 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 140 328 1.5E-57 T 13-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AP3564_15935 4a94b681cd19d3616c59050024f2c4e5 347 Gene3D G3DSA:3.40.50.720 8 339 7.7E-145 T 13-10-2018 AP3564_15635 170fe488d59764068a3e6eac9f31cbc8 184 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 128 142 6.6E-7 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 AP3564_15635 170fe488d59764068a3e6eac9f31cbc8 184 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 111 124 6.6E-7 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 AP3564_15635 170fe488d59764068a3e6eac9f31cbc8 184 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 143 156 6.6E-7 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 AP3564_15635 170fe488d59764068a3e6eac9f31cbc8 184 SUPERFAMILY SSF51230 107 181 1.14E-17 T 13-10-2018 IPR011053 Single hybrid motif AP3564_15635 170fe488d59764068a3e6eac9f31cbc8 184 Pfam PF00364 Biotin-requiring enzyme 109 180 2.4E-14 T 13-10-2018 IPR000089 Biotin/lipoyl attachment AP3564_15635 170fe488d59764068a3e6eac9f31cbc8 184 Gene3D G3DSA:2.40.50.100 104 181 1.9E-21 T 13-10-2018 AP3564_15535 735086c635aed3930a0cb8cf7be0b849 514 Gene3D G3DSA:3.30.420.40 4 252 4.0E-86 T 13-10-2018 AP3564_15535 735086c635aed3930a0cb8cf7be0b849 514 PIRSF PIRSF000538 5 507 8.2E-151 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AP3564_15535 735086c635aed3930a0cb8cf7be0b849 514 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 7 251 7.7E-77 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AP3564_15535 735086c635aed3930a0cb8cf7be0b849 514 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 260 455 7.4E-39 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AP3564_15535 735086c635aed3930a0cb8cf7be0b849 514 SUPERFAMILY SSF53067 254 502 2.94E-68 T 13-10-2018 AP3564_15535 735086c635aed3930a0cb8cf7be0b849 514 Gene3D G3DSA:3.30.420.40 253 513 2.9E-88 T 13-10-2018 AP3564_15535 735086c635aed3930a0cb8cf7be0b849 514 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 136 148 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AP3564_15535 735086c635aed3930a0cb8cf7be0b849 514 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 368 388 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AP3564_15535 735086c635aed3930a0cb8cf7be0b849 514 SUPERFAMILY SSF53067 8 254 1.12E-74 T 13-10-2018 AP3564_00830 be6aad06749a10139afa30b054e30cfe 383 PIRSF PIRSF012509 1 383 1.1E-145 T 13-10-2018 IPR011426 CamS sex pheromone cAM373 AP3564_00830 be6aad06749a10139afa30b054e30cfe 383 Pfam PF07537 CamS sex pheromone cAM373 precursor 58 375 2.9E-122 T 13-10-2018 IPR011426 CamS sex pheromone cAM373 AP3564_00830 be6aad06749a10139afa30b054e30cfe 383 Gene3D G3DSA:3.10.570.10 55 383 3.5E-135 T 13-10-2018 AP3564_02300 b00aac705e82dd8223aa3de4fec72394 415 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 3 414 42.67 T 13-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AP3564_02300 b00aac705e82dd8223aa3de4fec72394 415 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 11 404 2.1E-174 T 13-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AP3564_02300 b00aac705e82dd8223aa3de4fec72394 415 Gene3D G3DSA:3.40.309.10 224 372 1.6E-170 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AP3564_02300 b00aac705e82dd8223aa3de4fec72394 415 Pfam PF00171 Aldehyde dehydrogenase family 11 285 1.6E-14 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AP3564_02300 b00aac705e82dd8223aa3de4fec72394 415 Gene3D G3DSA:3.40.605.10 16 409 1.6E-170 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AP3564_02300 b00aac705e82dd8223aa3de4fec72394 415 PIRSF PIRSF000151 1 415 5.2E-186 T 13-10-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 AP3564_02300 b00aac705e82dd8223aa3de4fec72394 415 SUPERFAMILY SSF53720 3 414 1.7E-118 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AP3564_02300 b00aac705e82dd8223aa3de4fec72394 415 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 321 343 - T 13-10-2018 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AP3564_03235 a62e20174bfae053e63acf17029bd4ca 432 SUPERFAMILY SSF51984 3 88 5.3E-19 T 13-10-2018 AP3564_03235 a62e20174bfae053e63acf17029bd4ca 432 Pfam PF01225 Mur ligase family, catalytic domain 4 101 2.4E-25 T 13-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 AP3564_03235 a62e20174bfae053e63acf17029bd4ca 432 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 1 432 34.253 T 13-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AP3564_03235 a62e20174bfae053e63acf17029bd4ca 432 Pfam PF08245 Mur ligase middle domain 106 274 5.7E-24 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 AP3564_03235 a62e20174bfae053e63acf17029bd4ca 432 Gene3D G3DSA:3.40.1190.10 91 291 3.8E-54 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AP3564_03235 a62e20174bfae053e63acf17029bd4ca 432 Gene3D G3DSA:3.40.50.720 3 89 7.5E-20 T 13-10-2018 AP3564_03235 a62e20174bfae053e63acf17029bd4ca 432 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 4 428 9.6E-137 T 13-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AP3564_03235 a62e20174bfae053e63acf17029bd4ca 432 SUPERFAMILY SSF53623 87 293 3.4E-59 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AP3564_03235 a62e20174bfae053e63acf17029bd4ca 432 Pfam PF02875 Mur ligase family, glutamate ligase domain 295 378 8.0E-19 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 AP3564_03235 a62e20174bfae053e63acf17029bd4ca 432 SUPERFAMILY SSF53244 294 428 5.86E-37 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AP3564_03235 a62e20174bfae053e63acf17029bd4ca 432 Gene3D G3DSA:3.90.190.20 292 430 1.9E-42 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AP3564_11540 0a68250fc0d81595bd595527c4fae6e1 32 TIGRFAM TIGR01732 tiny_TM_bacill: conserved hypothetical protein 6 29 9.1E-16 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like AP3564_11540 0a68250fc0d81595bd595527c4fae6e1 32 Pfam PF09680 Protein of unknown function (Tiny_TM_bacill) 7 30 6.2E-14 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like AP3564_08730 a5f81a88a4193b042aa10600f9e61d28 474 SUPERFAMILY SSF51338 5 74 2.45E-7 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AP3564_08730 a5f81a88a4193b042aa10600f9e61d28 474 Gene3D G3DSA:2.30.40.10 13 426 6.1E-134 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AP3564_08730 a5f81a88a4193b042aa10600f9e61d28 474 SUPERFAMILY SSF51338 349 454 1.92E-24 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AP3564_08730 a5f81a88a4193b042aa10600f9e61d28 474 SUPERFAMILY SSF51556 59 376 1.92E-94 T 13-10-2018 IPR032466 Metal-dependent hydrolase AP3564_08730 a5f81a88a4193b042aa10600f9e61d28 474 Pfam PF01979 Amidohydrolase family 56 425 1.3E-62 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AP3564_08730 a5f81a88a4193b042aa10600f9e61d28 474 Gene3D G3DSA:3.20.20.140 60 376 6.1E-134 T 13-10-2018 AP3564_00755 f3707a54fea732198de74de712388c81 738 Hamap MF_00420 Phosphoribosylformylglycinamidine synthase subunit PurL [purL]. 1 738 336.727 T 13-10-2018 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 AP3564_00755 f3707a54fea732198de74de712388c81 738 Pfam PF02769 AIR synthase related protein, C-terminal domain 207 360 1.1E-33 T 13-10-2018 IPR010918 PurM-like, C-terminal domain AP3564_00755 f3707a54fea732198de74de712388c81 738 Pfam PF02769 AIR synthase related protein, C-terminal domain 576 708 7.6E-18 T 13-10-2018 IPR010918 PurM-like, C-terminal domain AP3564_00755 f3707a54fea732198de74de712388c81 738 SUPERFAMILY SSF55326 400 570 3.01E-60 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AP3564_00755 f3707a54fea732198de74de712388c81 738 PIRSF PIRSF001587 8 738 0.0 T 13-10-2018 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 AP3564_00755 f3707a54fea732198de74de712388c81 738 SUPERFAMILY SSF55326 18 201 2.39E-52 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AP3564_00755 f3707a54fea732198de74de712388c81 738 Gene3D G3DSA:3.90.650.10 34 362 3.9E-137 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AP3564_00755 f3707a54fea732198de74de712388c81 738 Gene3D G3DSA:3.90.650.10 570 738 5.4E-42 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AP3564_00755 f3707a54fea732198de74de712388c81 738 Gene3D G3DSA:3.30.1330.10 389 566 1.4E-63 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AP3564_00755 f3707a54fea732198de74de712388c81 738 TIGRFAM TIGR01736 FGAM_synth_II: phosphoribosylformylglycinamidine synthase II 24 736 0.0 T 13-10-2018 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 AP3564_00755 f3707a54fea732198de74de712388c81 738 SUPERFAMILY SSF56042 205 430 8.37E-58 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AP3564_00755 f3707a54fea732198de74de712388c81 738 Pfam PF00586 AIR synthase related protein, N-terminal domain 445 562 3.8E-25 T 13-10-2018 IPR016188 PurM-like, N-terminal domain AP3564_00755 f3707a54fea732198de74de712388c81 738 Pfam PF00586 AIR synthase related protein, N-terminal domain 89 194 2.8E-25 T 13-10-2018 IPR016188 PurM-like, N-terminal domain AP3564_00755 f3707a54fea732198de74de712388c81 738 SUPERFAMILY SSF56042 572 737 1.94E-40 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AP3564_00755 f3707a54fea732198de74de712388c81 738 Gene3D G3DSA:3.30.1330.10 49 197 3.9E-137 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AP3564_11580 19c3f7d97accd5137a6182f1cc00bb59 296 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 39 282 6.6E-67 T 13-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 AP3564_11580 19c3f7d97accd5137a6182f1cc00bb59 296 SUPERFAMILY SSF53850 34 295 3.44E-82 T 13-10-2018 AP3564_11580 19c3f7d97accd5137a6182f1cc00bb59 296 Gene3D G3DSA:3.40.190.10 40 291 3.8E-98 T 13-10-2018 AP3564_11580 19c3f7d97accd5137a6182f1cc00bb59 296 Gene3D G3DSA:3.40.190.100 120 228 3.8E-98 T 13-10-2018 AP3564_00805 3ff86f139c4c84e8a19b397c15ba54c9 101 Gene3D G3DSA:1.10.1270.10 2 101 1.3E-39 T 13-10-2018 IPR038116 TrpR-like superfamily AP3564_00805 3ff86f139c4c84e8a19b397c15ba54c9 101 PIRSF PIRSF012508 1 100 4.5E-48 T 13-10-2018 IPR013368 TrpR homologue YerC/YecD AP3564_00805 3ff86f139c4c84e8a19b397c15ba54c9 101 SUPERFAMILY SSF48295 3 94 6.28E-33 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AP3564_00805 3ff86f139c4c84e8a19b397c15ba54c9 101 TIGRFAM TIGR02531 yecD_yerC: TrpR homolog YerC/YecD 7 94 5.0E-49 T 13-10-2018 IPR013368 TrpR homologue YerC/YecD AP3564_00805 3ff86f139c4c84e8a19b397c15ba54c9 101 Pfam PF01371 Trp repressor protein 10 93 3.1E-34 T 13-10-2018 IPR000831 Trp repressor GO:0003700|GO:0005622|GO:0006355 AP3564_04825 3fec62f7ce567cc82467cc687141f750 238 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 25 217 2.8E-51 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 AP3564_04825 3fec62f7ce567cc82467cc687141f750 238 Gene3D G3DSA:3.40.50.150 2 238 3.1E-86 T 13-10-2018 AP3564_04825 3fec62f7ce567cc82467cc687141f750 238 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 14 214 28.911 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 AP3564_04825 3fec62f7ce567cc82467cc687141f750 238 Pfam PF02527 rRNA small subunit methyltransferase G 22 204 2.1E-57 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 AP3564_04825 3fec62f7ce567cc82467cc687141f750 238 SUPERFAMILY SSF53335 7 237 2.09E-46 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_04825 3fec62f7ce567cc82467cc687141f750 238 PIRSF PIRSF003078 2 220 9.1E-60 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 AP3564_11770 8d226071a0b65115d92dd1bb282b6058 355 Gene3D G3DSA:3.30.300.210 210 355 1.5E-18 T 13-10-2018 IPR038501 Spore germination GerAC superfamily AP3564_11770 8d226071a0b65115d92dd1bb282b6058 355 Pfam PF05504 Spore germination B3/ GerAC like, C-terminal 194 352 1.1E-27 T 13-10-2018 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 AP3564_11770 8d226071a0b65115d92dd1bb282b6058 355 TIGRFAM TIGR02887 spore_ger_x_C: germination protein, Ger(x)C family 1 354 1.8E-83 T 13-10-2018 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 AP3564_10240 35e35274afe7c10e0d1dda512fe7e96c 258 SUPERFAMILY SSF51735 6 256 7.93E-67 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_10240 35e35274afe7c10e0d1dda512fe7e96c 258 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 254 3.0E-89 T 13-10-2018 AP3564_10240 35e35274afe7c10e0d1dda512fe7e96c 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 6.8E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_10240 35e35274afe7c10e0d1dda512fe7e96c 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 6.8E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_10240 35e35274afe7c10e0d1dda512fe7e96c 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 6.8E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_10240 35e35274afe7c10e0d1dda512fe7e96c 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 6.8E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_10240 35e35274afe7c10e0d1dda512fe7e96c 258 Gene3D G3DSA:3.40.50.720 1 256 2.7E-60 T 13-10-2018 AP3564_10240 35e35274afe7c10e0d1dda512fe7e96c 258 PIRSF PIRSF000094 2 258 6.5E-107 T 13-10-2018 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AP3564_09290 1ec808619533daecdaf778c7980da6a6 166 Gene3D G3DSA:3.30.70.920 55 153 5.8E-21 T 13-10-2018 AP3564_09290 1ec808619533daecdaf778c7980da6a6 166 SUPERFAMILY SSF46785 3 61 1.13E-7 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_09290 1ec808619533daecdaf778c7980da6a6 166 Pfam PF13412 Winged helix-turn-helix DNA-binding 4 49 9.5E-6 T 13-10-2018 AP3564_09290 1ec808619533daecdaf778c7980da6a6 166 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 3 19 5.6E-6 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AP3564_09290 1ec808619533daecdaf778c7980da6a6 166 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 49 5.6E-6 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AP3564_09290 1ec808619533daecdaf778c7980da6a6 166 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 19 30 5.6E-6 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AP3564_09290 1ec808619533daecdaf778c7980da6a6 166 SUPERFAMILY SSF54909 66 147 2.68E-18 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel AP3564_09290 1ec808619533daecdaf778c7980da6a6 166 Gene3D G3DSA:1.10.10.10 1 54 1.6E-8 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_09290 1ec808619533daecdaf778c7980da6a6 166 Pfam PF01037 Lrp/AsnC ligand binding domain 72 144 6.2E-14 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AP3564_09290 1ec808619533daecdaf778c7980da6a6 166 SMART SM00344 3 114 1.5E-5 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AP3564_09820 5bc33f90b7f4790f38e4f30b6a6c242b 418 SUPERFAMILY SSF52540 13 413 6.05E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_09820 5bc33f90b7f4790f38e4f30b6a6c242b 418 Pfam PF00580 UvrD/REP helicase N-terminal domain 13 269 1.8E-53 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 AP3564_09820 5bc33f90b7f4790f38e4f30b6a6c242b 418 Gene3D G3DSA:3.40.50.300 4 213 1.2E-43 T 13-10-2018 AP3564_09820 5bc33f90b7f4790f38e4f30b6a6c242b 418 Gene3D G3DSA:3.40.50.300 261 417 2.6E-10 T 13-10-2018 AP3564_14960 5d0435ff06c9ab7a384340e64e59c559 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 7.0E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_14960 5d0435ff06c9ab7a384340e64e59c559 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 7.0E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_14960 5d0435ff06c9ab7a384340e64e59c559 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 7.0E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_14960 5d0435ff06c9ab7a384340e64e59c559 290 Gene3D G3DSA:1.10.10.10 1 81 4.5E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_14960 5d0435ff06c9ab7a384340e64e59c559 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 62 6.0E-15 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_14960 5d0435ff06c9ab7a384340e64e59c559 290 Gene3D G3DSA:3.40.190.290 82 284 1.4E-72 T 13-10-2018 AP3564_14960 5d0435ff06c9ab7a384340e64e59c559 290 SUPERFAMILY SSF46785 1 110 3.5E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_14960 5d0435ff06c9ab7a384340e64e59c559 290 Pfam PF03466 LysR substrate binding domain 88 282 3.2E-29 T 13-10-2018 IPR005119 LysR, substrate-binding AP3564_14960 5d0435ff06c9ab7a384340e64e59c559 290 SUPERFAMILY SSF53850 89 283 2.81E-29 T 13-10-2018 AP3564_13825 8f11045e862670da7379ca5a0f14cd75 280 SUPERFAMILY SSF161098 6 280 6.17E-74 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_13825 8f11045e862670da7379ca5a0f14cd75 280 Gene3D G3DSA:1.10.3720.10 1 267 6.6E-70 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_13825 8f11045e862670da7379ca5a0f14cd75 280 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 272 3.7E-21 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AP3564_17400 5706e1a64ba842f470b69115ecd88b2c 391 Pfam PF01578 Cytochrome C assembly protein 260 388 1.4E-25 T 13-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 AP3564_17400 5706e1a64ba842f470b69115ecd88b2c 391 Pfam PF01578 Cytochrome C assembly protein 72 184 2.7E-7 T 13-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 AP3564_17400 5706e1a64ba842f470b69115ecd88b2c 391 TIGRFAM TIGR03144 cytochr_II_ccsB: cytochrome c-type biogenesis protein CcsB 48 391 9.8E-77 T 13-10-2018 IPR017562 Cytochrome c-type biogenesis protein CcsA GO:0017004 AP3564_07970 9b2da5f9c93d9663e8e9b22e1eeb0720 393 Pfam PF07905 Purine catabolism regulatory protein-like family 7 122 2.1E-26 T 13-10-2018 IPR012914 Purine catabolism PurC-like domain AP3564_07970 9b2da5f9c93d9663e8e9b22e1eeb0720 393 Gene3D G3DSA:1.10.10.2840 259 390 9.3E-14 T 13-10-2018 AP3564_07970 9b2da5f9c93d9663e8e9b22e1eeb0720 393 Pfam PF13556 PucR C-terminal helix-turn-helix domain 328 384 5.9E-18 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain AP3564_04645 f8ab18acf71481dcc437ad0d29dd3b2c 467 SUPERFAMILY SSF54373 223 314 4.58E-8 T 13-10-2018 AP3564_04645 f8ab18acf71481dcc437ad0d29dd3b2c 467 Gene3D G3DSA:3.30.9.10 90 317 1.7E-100 T 13-10-2018 AP3564_04645 f8ab18acf71481dcc437ad0d29dd3b2c 467 Gene3D G3DSA:3.50.50.60 7 351 1.7E-100 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_04645 f8ab18acf71481dcc437ad0d29dd3b2c 467 Gene3D G3DSA:1.10.10.1100 378 449 5.4E-16 T 13-10-2018 AP3564_04645 f8ab18acf71481dcc437ad0d29dd3b2c 467 Pfam PF01266 FAD dependent oxidoreductase 7 355 9.7E-62 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AP3564_04645 f8ab18acf71481dcc437ad0d29dd3b2c 467 Pfam PF04324 BFD-like [2Fe-2S] binding domain 389 443 9.5E-13 T 13-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain AP3564_04645 f8ab18acf71481dcc437ad0d29dd3b2c 467 SUPERFAMILY SSF51905 5 358 3.5E-43 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_07130 87e7d20be9affcc591da31eecac15c5b 297 SUPERFAMILY SSF51658 7 291 1.8E-52 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily AP3564_07130 87e7d20be9affcc591da31eecac15c5b 297 TIGRFAM TIGR04379 myo_inos_iolE: myo-inosose-2 dehydratase 6 292 6.0E-120 T 13-10-2018 IPR030823 IolE/MocC family KEGG: 00562+4.2.1.44 AP3564_07130 87e7d20be9affcc591da31eecac15c5b 297 Pfam PF01261 Xylose isomerase-like TIM barrel 46 222 6.1E-25 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AP3564_07130 87e7d20be9affcc591da31eecac15c5b 297 Hamap MF_01672 Inosose dehydratase [iolE]. 1 295 56.437 T 13-10-2018 IPR023952 Inosose dehydratase GO:0019310|GO:0030145|GO:0050114 KEGG: 00562+4.2.1.44 AP3564_07130 87e7d20be9affcc591da31eecac15c5b 297 Gene3D G3DSA:3.20.20.150 2 296 1.0E-78 T 13-10-2018 AP3564_18715 eada153e9e971a484cbf818bccb7cb0a 569 Gene3D G3DSA:2.30.30.40 179 235 5.3E-20 T 13-10-2018 AP3564_18715 eada153e9e971a484cbf818bccb7cb0a 569 SUPERFAMILY SSF53187 393 567 1.66E-52 T 13-10-2018 AP3564_18715 eada153e9e971a484cbf818bccb7cb0a 569 Pfam PF08239 Bacterial SH3 domain 187 235 5.0E-16 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type AP3564_18715 eada153e9e971a484cbf818bccb7cb0a 569 Pfam PF08239 Bacterial SH3 domain 325 375 1.7E-11 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type AP3564_18715 eada153e9e971a484cbf818bccb7cb0a 569 Pfam PF08239 Bacterial SH3 domain 115 164 7.2E-15 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type AP3564_18715 eada153e9e971a484cbf818bccb7cb0a 569 Pfam PF08239 Bacterial SH3 domain 48 98 3.6E-10 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type AP3564_18715 eada153e9e971a484cbf818bccb7cb0a 569 Pfam PF08239 Bacterial SH3 domain 255 307 3.3E-16 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type AP3564_18715 eada153e9e971a484cbf818bccb7cb0a 569 PIRSF PIRSF037846 307 568 2.2E-96 T 13-10-2018 IPR017293 N-acetylmuramoyl-L-alanine amidase, YrvJ, predicted MetaCyc: PWY-7883 AP3564_18715 eada153e9e971a484cbf818bccb7cb0a 569 PIRSF PIRSF037846 170 313 2.2E-26 T 13-10-2018 IPR017293 N-acetylmuramoyl-L-alanine amidase, YrvJ, predicted MetaCyc: PWY-7883 AP3564_18715 eada153e9e971a484cbf818bccb7cb0a 569 PIRSF PIRSF037846 9 181 1.5E-47 T 13-10-2018 IPR017293 N-acetylmuramoyl-L-alanine amidase, YrvJ, predicted MetaCyc: PWY-7883 AP3564_18715 eada153e9e971a484cbf818bccb7cb0a 569 SMART SM00287 177 239 3.1E-12 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type AP3564_18715 eada153e9e971a484cbf818bccb7cb0a 569 SMART SM00287 247 310 5.4E-16 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type AP3564_18715 eada153e9e971a484cbf818bccb7cb0a 569 SMART SM00287 316 378 5.3E-14 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type AP3564_18715 eada153e9e971a484cbf818bccb7cb0a 569 SMART SM00287 38 100 4.5E-13 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type AP3564_18715 eada153e9e971a484cbf818bccb7cb0a 569 SMART SM00287 105 168 1.6E-15 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type AP3564_18715 eada153e9e971a484cbf818bccb7cb0a 569 SUPERFAMILY SSF50044 132 189 3.76E-6 T 13-10-2018 IPR036028 SH3-like domain superfamily GO:0005515 AP3564_18715 eada153e9e971a484cbf818bccb7cb0a 569 SMART SM00646 455 564 5.0E-30 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 AP3564_18715 eada153e9e971a484cbf818bccb7cb0a 569 Gene3D G3DSA:2.30.30.40 104 178 2.2E-20 T 13-10-2018 AP3564_18715 eada153e9e971a484cbf818bccb7cb0a 569 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 396 564 1.8E-47 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 AP3564_18715 eada153e9e971a484cbf818bccb7cb0a 569 Gene3D G3DSA:3.40.630.40 391 569 1.5E-57 T 13-10-2018 AP3564_18715 eada153e9e971a484cbf818bccb7cb0a 569 Gene3D G3DSA:2.30.30.40 31 101 3.3E-15 T 13-10-2018 AP3564_18715 eada153e9e971a484cbf818bccb7cb0a 569 Gene3D G3DSA:2.30.30.40 238 310 3.2E-22 T 13-10-2018 AP3564_18715 eada153e9e971a484cbf818bccb7cb0a 569 Gene3D G3DSA:2.30.30.40 311 381 1.0E-14 T 13-10-2018 AP3564_13640 1f83e06150c0aaa003036be04fefeac0 199 SUPERFAMILY SSF46894 121 198 2.31E-18 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AP3564_13640 1f83e06150c0aaa003036be04fefeac0 199 SMART SM00421 135 192 1.1E-18 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_13640 1f83e06150c0aaa003036be04fefeac0 199 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 168 9.1E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_13640 1f83e06150c0aaa003036be04fefeac0 199 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 138 152 9.1E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_13640 1f83e06150c0aaa003036be04fefeac0 199 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 180 9.1E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_13640 1f83e06150c0aaa003036be04fefeac0 199 Pfam PF00072 Response regulator receiver domain 4 113 9.6E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_13640 1f83e06150c0aaa003036be04fefeac0 199 SMART SM00448 2 113 7.0E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_13640 1f83e06150c0aaa003036be04fefeac0 199 Pfam PF00196 Bacterial regulatory proteins, luxR family 137 189 4.4E-18 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_13640 1f83e06150c0aaa003036be04fefeac0 199 SUPERFAMILY SSF52172 1 129 7.4E-30 T 13-10-2018 IPR011006 CheY-like superfamily AP3564_13640 1f83e06150c0aaa003036be04fefeac0 199 Gene3D G3DSA:3.40.50.12740 2 196 9.8E-59 T 13-10-2018 AP3564_12055 60e4179d93d4e4408d8028173b28ccdb 354 Pfam PF02653 Branched-chain amino acid transport system / permease component 28 318 2.3E-38 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AP3564_12055 60e4179d93d4e4408d8028173b28ccdb 354 TIGRFAM TIGR03408 urea_trans_UrtC: urea ABC transporter, permease protein UrtC 19 328 7.9E-136 T 13-10-2018 IPR017778 ABC transporter, urea, permease protein, UrtC AP3564_15860 c7fe1bdff203ec1c43cef18d1e88a3c4 192 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1 187 3.4E-64 T 13-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 AP3564_15860 c7fe1bdff203ec1c43cef18d1e88a3c4 192 PIRSF PIRSF000847 1 192 9.0E-52 T 13-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 AP3564_15860 c7fe1bdff203ec1c43cef18d1e88a3c4 192 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 59 81 - T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AP3564_15860 c7fe1bdff203ec1c43cef18d1e88a3c4 192 Gene3D G3DSA:1.20.120.1760 3 182 1.4E-9 T 13-10-2018 AP3564_15860 c7fe1bdff203ec1c43cef18d1e88a3c4 192 Pfam PF01066 CDP-alcohol phosphatidyltransferase 2 81 1.8E-16 T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AP3564_15905 27f964f47b58f9c07506e0871390e8b2 770 SUPERFAMILY SSF52540 380 675 1.59E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_15905 27f964f47b58f9c07506e0871390e8b2 770 SMART SM00382 442 624 9.4E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_15905 27f964f47b58f9c07506e0871390e8b2 770 SUPERFAMILY SSF46785 698 765 2.04E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_15905 27f964f47b58f9c07506e0871390e8b2 770 SMART SM00843 698 763 3.2E-41 T 13-10-2018 IPR018541 FtsK gamma domain AP3564_15905 27f964f47b58f9c07506e0871390e8b2 770 Gene3D G3DSA:1.10.10.10 694 759 6.2E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_15905 27f964f47b58f9c07506e0871390e8b2 770 Pfam PF09397 Ftsk gamma domain 701 760 1.1E-30 T 13-10-2018 IPR018541 FtsK gamma domain AP3564_15905 27f964f47b58f9c07506e0871390e8b2 770 Gene3D G3DSA:3.40.50.300 404 689 2.5E-111 T 13-10-2018 AP3564_15905 27f964f47b58f9c07506e0871390e8b2 770 Pfam PF01580 FtsK/SpoIIIE family 407 603 2.9E-62 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 AP3564_15905 27f964f47b58f9c07506e0871390e8b2 770 Gene3D G3DSA:3.30.980.40 299 402 3.2E-37 T 13-10-2018 AP3564_01185 54e02fb1d0a776bfc65bf83df09795a4 630 TIGRFAM TIGR01863 cas_Csd1: CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG 4 620 2.1E-143 T 13-10-2018 IPR010144 CRISPR-associated protein, Csd1-type AP3564_01185 54e02fb1d0a776bfc65bf83df09795a4 630 Pfam PF09709 CRISPR-associated protein (Cas_Csd1) 7 614 1.4E-139 T 13-10-2018 IPR010144 CRISPR-associated protein, Csd1-type AP3564_08165 cd2521219b8950d4d0d8a3c4bfa580ff 142 SUPERFAMILY SSF158430 1 137 1.7E-22 T 13-10-2018 AP3564_08165 cd2521219b8950d4d0d8a3c4bfa580ff 142 Gene3D G3DSA:1.20.1260.120 2 137 1.2E-6 T 13-10-2018 AP3564_08165 cd2521219b8950d4d0d8a3c4bfa580ff 142 Pfam PF11155 Domain of unknown function (DUF2935) 13 133 1.9E-18 T 13-10-2018 IPR021328 Protein of unknown function DUF2935 AP3564_00190 975394dba3e367d857543cd42c9dc3ed 184 Pfam PF07155 ECF-type riboflavin transporter, S component 5 173 2.4E-50 T 13-10-2018 IPR009825 ECF transporter, substrate-specific component-like GO:0016020 AP3564_00190 975394dba3e367d857543cd42c9dc3ed 184 Hamap MF_01572 UPF0397 protein . 4 184 28.335 T 13-10-2018 IPR022914 Protein of unknown function UPF0397 AP3564_00190 975394dba3e367d857543cd42c9dc3ed 184 Gene3D G3DSA:1.10.1760.20 1 178 2.0E-22 T 13-10-2018 AP3564_11980 e93f1ba5c867287617225230e4f9c7b5 290 Pfam PF03466 LysR substrate binding domain 88 285 9.4E-32 T 13-10-2018 IPR005119 LysR, substrate-binding AP3564_11980 e93f1ba5c867287617225230e4f9c7b5 290 Gene3D G3DSA:3.40.190.290 82 287 3.9E-70 T 13-10-2018 AP3564_11980 e93f1ba5c867287617225230e4f9c7b5 290 SUPERFAMILY SSF46785 3 111 1.11E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_11980 e93f1ba5c867287617225230e4f9c7b5 290 SUPERFAMILY SSF53850 89 289 5.7E-29 T 13-10-2018 AP3564_11980 e93f1ba5c867287617225230e4f9c7b5 290 Gene3D G3DSA:1.10.10.10 1 81 4.0E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_11980 e93f1ba5c867287617225230e4f9c7b5 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.5E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_11980 e93f1ba5c867287617225230e4f9c7b5 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.5E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_11980 e93f1ba5c867287617225230e4f9c7b5 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.5E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_11980 e93f1ba5c867287617225230e4f9c7b5 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 1.7E-16 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_02180 3125f41ac221cdeeea0fc7339faa9f5a 211 Gene3D G3DSA:3.40.50.360 1 211 9.6E-61 T 13-10-2018 IPR029039 Flavoprotein-like superfamily AP3564_02180 3125f41ac221cdeeea0fc7339faa9f5a 211 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 211 28.274 T 13-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 AP3564_02180 3125f41ac221cdeeea0fc7339faa9f5a 211 Pfam PF02525 Flavodoxin-like fold 2 206 1.7E-46 T 13-10-2018 IPR003680 Flavodoxin-like fold AP3564_02180 3125f41ac221cdeeea0fc7339faa9f5a 211 SUPERFAMILY SSF52218 2 210 3.19E-51 T 13-10-2018 IPR029039 Flavoprotein-like superfamily AP3564_17800 a6f773af1798fc31a2246658e95d92cb 264 SUPERFAMILY SSF52172 2 131 4.7E-33 T 13-10-2018 IPR011006 CheY-like superfamily AP3564_17800 a6f773af1798fc31a2246658e95d92cb 264 SUPERFAMILY SSF46894 147 262 4.08E-48 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AP3564_17800 a6f773af1798fc31a2246658e95d92cb 264 TIGRFAM TIGR02875 spore_0_A: sporulation transcription factor Spo0A 2 264 9.7E-131 T 13-10-2018 IPR012052 Sporulation transcription factor Spo0A GO:0003677|GO:0005509|GO:0006355|GO:0043937|GO:0051606 AP3564_17800 a6f773af1798fc31a2246658e95d92cb 264 ProDom PD010908 TRANSCRIPTION SPORULATION TWO-COMPONENT DNA-BINDING PHOSPHORYLATION SENSORY REGULATION TRANSDUCTION METAL-BINDING CALCIUM 153 263 1.0E-58 T 13-10-2018 IPR014879 Sporulation initiation factor Spo0A, C-terminal GO:0003700|GO:0005509|GO:0005737|GO:0006355|GO:0042173 AP3564_17800 a6f773af1798fc31a2246658e95d92cb 264 Gene3D G3DSA:1.10.10.10 147 264 8.1E-55 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_17800 a6f773af1798fc31a2246658e95d92cb 264 Gene3D G3DSA:3.40.50.2300 1 146 3.3E-33 T 13-10-2018 AP3564_17800 a6f773af1798fc31a2246658e95d92cb 264 SMART SM00448 4 119 1.1E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_17800 a6f773af1798fc31a2246658e95d92cb 264 Pfam PF00072 Response regulator receiver domain 6 118 6.2E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_17800 a6f773af1798fc31a2246658e95d92cb 264 PIRSF PIRSF002937 1 264 3.8E-133 T 13-10-2018 IPR012052 Sporulation transcription factor Spo0A GO:0003677|GO:0005509|GO:0006355|GO:0043937|GO:0051606 AP3564_17800 a6f773af1798fc31a2246658e95d92cb 264 Pfam PF08769 Sporulation initiation factor Spo0A C terminal 154 257 5.2E-45 T 13-10-2018 IPR014879 Sporulation initiation factor Spo0A, C-terminal GO:0003700|GO:0005509|GO:0005737|GO:0006355|GO:0042173 AP3564_08700 996321829018831ad718e37764d7a145 276 Gene3D G3DSA:3.30.420.10 110 266 1.3E-17 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AP3564_08700 996321829018831ad718e37764d7a145 276 Pfam PF13276 HTH-like domain 41 91 4.8E-16 T 13-10-2018 IPR025948 HTH-like domain AP3564_08700 996321829018831ad718e37764d7a145 276 SUPERFAMILY SSF53098 107 269 2.91E-40 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_08700 996321829018831ad718e37764d7a145 276 Pfam PF00665 Integrase core domain 114 225 4.6E-25 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AP3564_16460 f485772ab415fd8c041b2eb57ddb9990 207 Gene3D G3DSA:3.30.63.10 39 98 1.2E-69 T 13-10-2018 AP3564_16460 f485772ab415fd8c041b2eb57ddb9990 207 SUPERFAMILY SSF52540 5 193 1.48E-72 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_16460 f485772ab415fd8c041b2eb57ddb9990 207 ProSitePatterns PS00856 Guanylate kinase-like signature. 42 59 - T 13-10-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 AP3564_16460 f485772ab415fd8c041b2eb57ddb9990 207 Hamap MF_00328 Guanylate kinase [gmk]. 5 189 37.738 T 13-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 AP3564_16460 f485772ab415fd8c041b2eb57ddb9990 207 SMART SM00072 6 189 1.2E-80 T 13-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit AP3564_16460 f485772ab415fd8c041b2eb57ddb9990 207 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 7 186 6.5E-76 T 13-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 AP3564_16460 f485772ab415fd8c041b2eb57ddb9990 207 Gene3D G3DSA:3.40.50.300 11 185 1.2E-69 T 13-10-2018 AP3564_16460 f485772ab415fd8c041b2eb57ddb9990 207 Pfam PF00625 Guanylate kinase 9 187 1.1E-54 T 13-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit AP3564_11835 7653370d42f36c6a8e493cbe57e0f90f 88 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 81 1.9E-33 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like AP3564_11835 7653370d42f36c6a8e493cbe57e0f90f 88 Pfam PF00381 PTS HPr component phosphorylation site 3 82 2.4E-29 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like AP3564_11835 7653370d42f36c6a8e493cbe57e0f90f 88 SUPERFAMILY SSF55594 1 83 2.88E-28 T 13-10-2018 IPR035895 HPr-like superfamily AP3564_11835 7653370d42f36c6a8e493cbe57e0f90f 88 PRINTS PR00107 Phosphocarrier protein signature 38 53 1.7E-25 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like AP3564_11835 7653370d42f36c6a8e493cbe57e0f90f 88 PRINTS PR00107 Phosphocarrier protein signature 13 29 1.7E-25 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like AP3564_11835 7653370d42f36c6a8e493cbe57e0f90f 88 PRINTS PR00107 Phosphocarrier protein signature 53 70 1.7E-25 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like AP3564_11835 7653370d42f36c6a8e493cbe57e0f90f 88 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 13-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site AP3564_11835 7653370d42f36c6a8e493cbe57e0f90f 88 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 13-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site AP3564_11835 7653370d42f36c6a8e493cbe57e0f90f 88 Gene3D G3DSA:3.30.1340.10 1 88 1.3E-36 T 13-10-2018 IPR035895 HPr-like superfamily AP3564_14930 710b483d2f188a934b320a5cf1d08e8c 112 SMART SM00530 11 66 4.5E-17 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AP3564_14930 710b483d2f188a934b320a5cf1d08e8c 112 SUPERFAMILY SSF47413 3 71 5.09E-20 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AP3564_14930 710b483d2f188a934b320a5cf1d08e8c 112 Pfam PF01381 Helix-turn-helix 12 66 2.6E-16 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AP3564_14930 710b483d2f188a934b320a5cf1d08e8c 112 Gene3D G3DSA:1.10.260.40 1 78 1.9E-24 T 13-10-2018 AP3564_16110 e0c1f63c8d2aa1afa70103b3a7c2688d 362 Gene3D G3DSA:3.40.50.300 166 350 1.6E-79 T 13-10-2018 AP3564_16110 e0c1f63c8d2aa1afa70103b3a7c2688d 362 SUPERFAMILY SSF52540 171 361 3.09E-31 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_16110 e0c1f63c8d2aa1afa70103b3a7c2688d 362 Gene3D G3DSA:1.20.120.1380 121 353 1.6E-79 T 13-10-2018 AP3564_16110 e0c1f63c8d2aa1afa70103b3a7c2688d 362 Pfam PF00448 SRP54-type protein, GTPase domain 174 361 2.9E-42 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AP3564_16110 e0c1f63c8d2aa1afa70103b3a7c2688d 362 SMART SM00962 171 362 4.0E-51 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AP3564_16110 e0c1f63c8d2aa1afa70103b3a7c2688d 362 SMART SM00382 170 334 6.3E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_16110 e0c1f63c8d2aa1afa70103b3a7c2688d 362 TIGRFAM TIGR03499 FlhF: flagellar biosynthesis protein FlhF 1 258 1.6E-62 T 13-10-2018 IPR020006 Flagellar biosynthesis protein FlhF GO:0003924|GO:0044781 AP3564_02710 5d4fda6f3fb4d802131e810590db7c5d 362 Gene3D G3DSA:3.90.180.10 26 329 3.0E-43 T 13-10-2018 AP3564_02710 5d4fda6f3fb4d802131e810590db7c5d 362 Gene3D G3DSA:3.40.50.720 166 298 3.0E-43 T 13-10-2018 AP3564_02710 5d4fda6f3fb4d802131e810590db7c5d 362 SUPERFAMILY SSF51735 154 311 6.05E-12 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_02710 5d4fda6f3fb4d802131e810590db7c5d 362 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 30 148 2.3E-16 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AP3564_02710 5d4fda6f3fb4d802131e810590db7c5d 362 SUPERFAMILY SSF50129 8 187 2.89E-22 T 13-10-2018 IPR011032 GroES-like superfamily AP3564_02710 5d4fda6f3fb4d802131e810590db7c5d 362 Pfam PF00107 Zinc-binding dehydrogenase 240 312 1.3E-8 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AP3564_13135 39eb2ce2e9807397364cd5cb10193982 122 SUPERFAMILY SSF46785 6 120 3.19E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_13135 39eb2ce2e9807397364cd5cb10193982 122 Pfam PF02334 Replication terminator protein 3 121 3.7E-53 T 13-10-2018 IPR003432 Replication terminator protein GO:0003677|GO:0006274 AP3564_13135 39eb2ce2e9807397364cd5cb10193982 122 PIRSF PIRSF021424 1 121 8.1E-62 T 13-10-2018 IPR003432 Replication terminator protein GO:0003677|GO:0006274 AP3564_13135 39eb2ce2e9807397364cd5cb10193982 122 ProDom PD077583 REPLICATION TRANSCRIPTION DNA-BINDING TERMINATOR REGULATION TERMINATION 3D-STRUCTURE 10 121 1.0E-43 T 13-10-2018 IPR003432 Replication terminator protein GO:0003677|GO:0006274 AP3564_13135 39eb2ce2e9807397364cd5cb10193982 122 Gene3D G3DSA:1.10.10.10 1 121 6.7E-46 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_15395 4fc524f79f42f14a48d6486ef9ad1389 802 Pfam PF00580 UvrD/REP helicase N-terminal domain 99 393 5.0E-45 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 AP3564_15395 4fc524f79f42f14a48d6486ef9ad1389 802 Gene3D G3DSA:3.40.50.300 607 796 1.1E-18 T 13-10-2018 AP3564_15395 4fc524f79f42f14a48d6486ef9ad1389 802 Gene3D G3DSA:3.40.50.300 290 426 2.7E-28 T 13-10-2018 AP3564_15395 4fc524f79f42f14a48d6486ef9ad1389 802 Gene3D G3DSA:3.40.50.300 92 281 1.2E-26 T 13-10-2018 AP3564_15395 4fc524f79f42f14a48d6486ef9ad1389 802 Pfam PF13361 UvrD-like helicase C-terminal domain 404 776 5.2E-26 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AP3564_15395 4fc524f79f42f14a48d6486ef9ad1389 802 SUPERFAMILY SSF52540 94 781 1.58E-75 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_07815 a3ae52424853a071f1331f7f8b2032d5 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 3.5E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_07815 a3ae52424853a071f1331f7f8b2032d5 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 19 32 3.5E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_07815 a3ae52424853a071f1331f7f8b2032d5 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 64 9.2E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_07815 a3ae52424853a071f1331f7f8b2032d5 200 SUPERFAMILY SSF46689 6 77 1.23E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_07815 a3ae52424853a071f1331f7f8b2032d5 200 ProSitePatterns PS01081 TetR-type HTH domain signature. 31 61 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AP3564_07815 a3ae52424853a071f1331f7f8b2032d5 200 Gene3D G3DSA:1.10.357.10 5 199 1.3E-25 T 13-10-2018 AP3564_02750 6789e01c855ab8bfd85078edb8fa4127 387 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 55 372 4.5E-52 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AP3564_02750 6789e01c855ab8bfd85078edb8fa4127 387 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 4 385 48.21 T 13-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AP3564_02750 6789e01c855ab8bfd85078edb8fa4127 387 Gene3D G3DSA:3.40.50.1100 56 378 3.7E-171 T 13-10-2018 AP3564_02750 6789e01c855ab8bfd85078edb8fa4127 387 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 9 383 2.2E-174 T 13-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AP3564_02750 6789e01c855ab8bfd85078edb8fa4127 387 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 83 97 - T 13-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AP3564_02750 6789e01c855ab8bfd85078edb8fa4127 387 SUPERFAMILY SSF53686 7 384 1.06E-136 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AP3564_02750 6789e01c855ab8bfd85078edb8fa4127 387 PIRSF PIRSF001413 1 387 1.2E-153 T 13-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AP3564_02750 6789e01c855ab8bfd85078edb8fa4127 387 Gene3D G3DSA:3.40.50.1100 12 208 3.7E-171 T 13-10-2018 AP3564_06170 eca5d52e707828ca7b3858bcc200fe58 424 PIRSF PIRSF006066 1 424 4.5E-156 T 13-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 AP3564_06170 eca5d52e707828ca7b3858bcc200fe58 424 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 415 8.3E-124 T 13-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit AP3564_06170 eca5d52e707828ca7b3858bcc200fe58 424 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 420 6.5E-131 T 13-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 AP3564_18930 6372499d18dd41629785a9b122e95f13 294 Gene3D G3DSA:2.40.10.340 122 273 3.1E-53 T 13-10-2018 AP3564_18930 6372499d18dd41629785a9b122e95f13 294 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 6 285 3.0E-67 T 13-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 AP3564_18930 6372499d18dd41629785a9b122e95f13 294 PIRSF PIRSF038471 1 291 1.9E-68 T 13-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 AP3564_18930 6372499d18dd41629785a9b122e95f13 294 Pfam PF04085 rod shape-determining protein MreC 125 276 4.1E-44 T 13-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 AP3564_18930 6372499d18dd41629785a9b122e95f13 294 Gene3D G3DSA:2.40.10.350 176 266 3.1E-53 T 13-10-2018 AP3564_10780 bff081c49ce6753480e18ff5da89b74e 340 Gene3D G3DSA:3.20.20.140 12 329 5.8E-39 T 13-10-2018 AP3564_10780 bff081c49ce6753480e18ff5da89b74e 340 SUPERFAMILY SSF51556 11 328 3.09E-44 T 13-10-2018 IPR032466 Metal-dependent hydrolase AP3564_10780 bff081c49ce6753480e18ff5da89b74e 340 Pfam PF04909 Amidohydrolase 13 321 1.1E-39 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AP3564_15410 700c3b2a6ae44a7270967e5c78acdccc 257 Pfam PF14335 Domain of unknown function (DUF4391) 20 249 6.9E-57 T 13-10-2018 IPR025503 Protein of unknown function DUF4391 AP3564_08225 d9647fffebe48749866b85d89e9a6e0d 179 SMART SM00506 9 142 6.0E-56 T 13-10-2018 IPR002589 Macro domain AP3564_08225 d9647fffebe48749866b85d89e9a6e0d 179 Pfam PF01661 Macro domain 26 142 3.5E-46 T 13-10-2018 IPR002589 Macro domain AP3564_08225 d9647fffebe48749866b85d89e9a6e0d 179 Gene3D G3DSA:3.40.220.10 4 179 3.0E-76 T 13-10-2018 AP3564_08225 d9647fffebe48749866b85d89e9a6e0d 179 SUPERFAMILY SSF52949 2 178 1.85E-70 T 13-10-2018 AP3564_05735 69da0792cfaf3778b476283cd9839a09 95 ProSitePatterns PS00050 Ribosomal protein L23 signature. 77 92 - T 13-10-2018 IPR001014 Ribosomal protein L23/L25, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05735 69da0792cfaf3778b476283cd9839a09 95 Gene3D G3DSA:3.30.70.330 1 95 1.3E-32 T 13-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily AP3564_05735 69da0792cfaf3778b476283cd9839a09 95 Pfam PF00276 Ribosomal protein L23 6 88 2.6E-32 T 13-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 AP3564_05735 69da0792cfaf3778b476283cd9839a09 95 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 5 95 21.638 T 13-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 AP3564_05735 69da0792cfaf3778b476283cd9839a09 95 SUPERFAMILY SSF54189 2 90 4.68E-32 T 13-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_00535 a92cd5b1bd40fe83690444d46a383b19 357 Pfam PF04041 beta-1,4-mannooligosaccharide phosphorylase 112 350 2.1E-58 T 13-10-2018 IPR007184 Mannoside phosphorylase AP3564_00535 a92cd5b1bd40fe83690444d46a383b19 357 SUPERFAMILY SSF75005 3 343 7.85E-78 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily AP3564_00535 a92cd5b1bd40fe83690444d46a383b19 357 Gene3D G3DSA:2.115.10.20 1 102 2.0E-5 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily AP3564_00535 a92cd5b1bd40fe83690444d46a383b19 357 Gene3D G3DSA:2.115.10.20 103 355 3.5E-92 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily AP3564_00535 a92cd5b1bd40fe83690444d46a383b19 357 PIRSF PIRSF016202 2 355 5.6E-101 T 13-10-2018 IPR007184 Mannoside phosphorylase AP3564_12190 7b36f04967ab9e2308c1ce6ebf1b1a96 751 Gene3D G3DSA:3.30.365.10 15 271 3.6E-122 T 13-10-2018 AP3564_12190 7b36f04967ab9e2308c1ce6ebf1b1a96 751 SUPERFAMILY SSF56003 127 738 4.06E-161 T 13-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 AP3564_12190 7b36f04967ab9e2308c1ce6ebf1b1a96 751 SUPERFAMILY SSF54665 7 142 3.93E-43 T 13-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily AP3564_12190 7b36f04967ab9e2308c1ce6ebf1b1a96 751 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 17 123 4.0E-32 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AP3564_12190 7b36f04967ab9e2308c1ce6ebf1b1a96 751 Gene3D G3DSA:3.30.365.10 358 735 2.5E-85 T 13-10-2018 AP3564_12190 7b36f04967ab9e2308c1ce6ebf1b1a96 751 SMART SM01008 17 123 2.2E-52 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AP3564_12190 7b36f04967ab9e2308c1ce6ebf1b1a96 751 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 140 679 2.5E-146 T 13-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AP3564_12190 7b36f04967ab9e2308c1ce6ebf1b1a96 751 Gene3D G3DSA:3.90.1170.50 32 123 3.6E-122 T 13-10-2018 AP3564_12190 7b36f04967ab9e2308c1ce6ebf1b1a96 751 Gene3D G3DSA:3.30.365.10 438 595 2.5E-85 T 13-10-2018 AP3564_12190 7b36f04967ab9e2308c1ce6ebf1b1a96 751 Gene3D G3DSA:3.30.365.10 124 347 3.6E-122 T 13-10-2018 AP3564_12190 7b36f04967ab9e2308c1ce6ebf1b1a96 751 TIGRFAM TIGR03196 pucD: xanthine dehydrogenase D subunit 7 737 9.9E-300 T 13-10-2018 IPR017609 Xanthine dehydrogenase D subunit KEGG: 00230+1.17.1.4|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999 AP3564_07530 eed1f107c1f82835c6573b9e965041c3 316 Pfam PF01238 Phosphomannose isomerase type I 7 315 2.6E-59 T 13-10-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 AP3564_07530 eed1f107c1f82835c6573b9e965041c3 316 Gene3D G3DSA:2.60.120.10 1 227 1.2E-99 T 13-10-2018 IPR014710 RmlC-like jelly roll fold AP3564_07530 eed1f107c1f82835c6573b9e965041c3 316 PIRSF PIRSF036894 3 316 4.8E-138 T 13-10-2018 IPR014628 Mannose-6-phosphate isomerase, Firmicutes type, short form GO:0004476|GO:0005975 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882 AP3564_07530 eed1f107c1f82835c6573b9e965041c3 316 SUPERFAMILY SSF51182 3 316 1.73E-113 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily AP3564_07530 eed1f107c1f82835c6573b9e965041c3 316 Gene3D G3DSA:2.60.120.10 228 316 3.3E-31 T 13-10-2018 IPR014710 RmlC-like jelly roll fold AP3564_07530 eed1f107c1f82835c6573b9e965041c3 316 TIGRFAM TIGR00218 manA: mannose-6-phosphate isomerase, class I 101 315 5.3E-61 T 13-10-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 AP3564_10925 78ac483c566ad139b2fc976311bb85db 232 SMART SM00895 95 222 7.0E-18 T 13-10-2018 IPR011711 GntR, C-terminal AP3564_10925 78ac483c566ad139b2fc976311bb85db 232 Gene3D G3DSA:1.20.120.530 90 231 8.2E-26 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AP3564_10925 78ac483c566ad139b2fc976311bb85db 232 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 61 2.0E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_10925 78ac483c566ad139b2fc976311bb85db 232 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 31 45 2.0E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_10925 78ac483c566ad139b2fc976311bb85db 232 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 71 3.9E-20 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_10925 78ac483c566ad139b2fc976311bb85db 232 SUPERFAMILY SSF48008 91 226 2.04E-24 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AP3564_10925 78ac483c566ad139b2fc976311bb85db 232 SUPERFAMILY SSF46785 5 75 4.48E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_10925 78ac483c566ad139b2fc976311bb85db 232 Pfam PF07729 FCD domain 95 221 2.1E-18 T 13-10-2018 IPR011711 GntR, C-terminal AP3564_10925 78ac483c566ad139b2fc976311bb85db 232 SMART SM00345 12 71 7.8E-21 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_10925 78ac483c566ad139b2fc976311bb85db 232 Gene3D G3DSA:1.10.10.10 1 71 1.5E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_13285 4dfe52045a4899ad79b4a622c7534c69 319 Gene3D G3DSA:3.60.15.10 7 262 4.2E-58 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AP3564_13285 4dfe52045a4899ad79b4a622c7534c69 319 SMART SM00849 22 228 1.1E-27 T 13-10-2018 IPR001279 Metallo-beta-lactamase AP3564_13285 4dfe52045a4899ad79b4a622c7534c69 319 Pfam PF00753 Metallo-beta-lactamase superfamily 27 228 1.5E-25 T 13-10-2018 IPR001279 Metallo-beta-lactamase AP3564_13285 4dfe52045a4899ad79b4a622c7534c69 319 SUPERFAMILY SSF56281 3 275 7.08E-53 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AP3564_18125 dfaf123610b516cb7d39d72f84cc0c67 322 ProSitePatterns PS01125 ROK family signature. 138 165 - T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 AP3564_18125 dfaf123610b516cb7d39d72f84cc0c67 322 Gene3D G3DSA:3.30.420.40 129 301 1.2E-107 T 13-10-2018 AP3564_18125 dfaf123610b516cb7d39d72f84cc0c67 322 Gene3D G3DSA:3.30.420.40 7 313 1.2E-107 T 13-10-2018 AP3564_18125 dfaf123610b516cb7d39d72f84cc0c67 322 Pfam PF00480 ROK family 7 317 2.1E-75 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 AP3564_18125 dfaf123610b516cb7d39d72f84cc0c67 322 SUPERFAMILY SSF53067 6 317 1.26E-72 T 13-10-2018 AP3564_18125 dfaf123610b516cb7d39d72f84cc0c67 322 TIGRFAM TIGR00744 ROK_glcA_fam: ROK family protein (putative glucokinase) 7 321 4.4E-118 T 13-10-2018 IPR004654 Glucokinase ROK GO:0004340|GO:0005737|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 AP3564_16880 37eccfc76fbc3b23dbe7ccd81a7823e7 301 Pfam PF02628 Cytochrome oxidase assembly protein 54 286 1.4E-34 T 13-10-2018 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 Reactome: R-HSA-189451 AP3564_16880 37eccfc76fbc3b23dbe7ccd81a7823e7 301 Hamap MF_01664 Heme A synthase [ctaA]. 1 301 30.894 T 13-10-2018 IPR023755 Heme A synthase, type 1 GO:0006784|GO:0016020|GO:0016627|GO:0055114 AP3564_06830 218af4e644dacbb38accebda99b7ee6c 335 SUPERFAMILY SSF81606 126 332 4.19E-11 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AP3564_06830 218af4e644dacbb38accebda99b7ee6c 335 Gene3D G3DSA:1.10.1240.30 1 84 9.0E-29 T 13-10-2018 IPR017944 KaiA/RbsU helical domain superfamily GO:0006468 AP3564_06830 218af4e644dacbb38accebda99b7ee6c 335 SUPERFAMILY SSF101215 4 84 1.24E-25 T 13-10-2018 IPR017944 KaiA/RbsU helical domain superfamily GO:0006468 AP3564_06830 218af4e644dacbb38accebda99b7ee6c 335 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 146 332 5.0E-47 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AP3564_06830 218af4e644dacbb38accebda99b7ee6c 335 Pfam PF08673 Phosphoserine phosphatase RsbU, N-terminal domain 10 83 4.0E-28 T 13-10-2018 IPR014787 Phosphoserine phosphatase RsbU, N-terminal KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3 AP3564_06830 218af4e644dacbb38accebda99b7ee6c 335 Gene3D G3DSA:3.60.40.10 88 335 3.3E-53 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AP3564_06830 218af4e644dacbb38accebda99b7ee6c 335 ProDom PD685490 RSBU REGULATOR SIGMA REGULATION FACTOR B PHOSPHATASE SIGMAB INDIRECT SIGMA-B 7 91 2.0E-28 T 13-10-2018 IPR014787 Phosphoserine phosphatase RsbU, N-terminal KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3 AP3564_06830 218af4e644dacbb38accebda99b7ee6c 335 SMART SM00331 119 333 1.4E-53 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AP3564_04790 d668a6795d7762c1ddb8e07814461d77 365 PIRSF PIRSF006641 1 365 4.6E-169 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 AP3564_04790 d668a6795d7762c1ddb8e07814461d77 365 SUPERFAMILY SSF52540 3 303 1.33E-90 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_04790 d668a6795d7762c1ddb8e07814461d77 365 Pfam PF01926 50S ribosome-binding GTPase 5 122 1.2E-24 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AP3564_04790 d668a6795d7762c1ddb8e07814461d77 365 Gene3D G3DSA:1.10.150.300 113 200 5.5E-162 T 13-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 AP3564_04790 d668a6795d7762c1ddb8e07814461d77 365 SUPERFAMILY SSF81271 281 362 1.59E-36 T 13-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 AP3564_04790 d668a6795d7762c1ddb8e07814461d77 365 Pfam PF06071 Protein of unknown function (DUF933) 281 364 5.6E-41 T 13-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 AP3564_04790 d668a6795d7762c1ddb8e07814461d77 365 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 365 9.4E-161 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 AP3564_04790 d668a6795d7762c1ddb8e07814461d77 365 Gene3D G3DSA:3.10.20.30 48 363 5.5E-162 T 13-10-2018 IPR012675 Beta-grasp domain superfamily AP3564_04790 d668a6795d7762c1ddb8e07814461d77 365 Gene3D G3DSA:3.40.50.300 4 280 5.5E-162 T 13-10-2018 AP3564_04790 d668a6795d7762c1ddb8e07814461d77 365 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 365 46.677 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 AP3564_04790 d668a6795d7762c1ddb8e07814461d77 365 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 2.7E-36 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AP3564_04790 d668a6795d7762c1ddb8e07814461d77 365 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 2.7E-36 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AP3564_04790 d668a6795d7762c1ddb8e07814461d77 365 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 2.7E-36 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AP3564_04790 d668a6795d7762c1ddb8e07814461d77 365 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 2.7E-36 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AP3564_01880 f7d6e0a0aa7a2837305015e68fd7ac11 97 SUPERFAMILY SSF46689 11 96 8.06E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_01880 f7d6e0a0aa7a2837305015e68fd7ac11 97 Gene3D G3DSA:1.10.10.60 16 95 6.4E-8 T 13-10-2018 AP3564_01880 f7d6e0a0aa7a2837305015e68fd7ac11 97 Pfam PF01527 Transposase 10 84 1.2E-11 T 13-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AP3564_13065 4772fd38c606f2761ec5dde3f0ad217d 419 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 3 418 3.1E-179 T 13-10-2018 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 AP3564_13065 4772fd38c606f2761ec5dde3f0ad217d 419 SUPERFAMILY SSF52777 188 417 6.67E-88 T 13-10-2018 AP3564_13065 4772fd38c606f2761ec5dde3f0ad217d 419 Pfam PF02817 e3 binding domain 122 155 4.0E-12 T 13-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 AP3564_13065 4772fd38c606f2761ec5dde3f0ad217d 419 Gene3D G3DSA:4.10.320.10 122 160 6.7E-13 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AP3564_13065 4772fd38c606f2761ec5dde3f0ad217d 419 Gene3D G3DSA:2.40.50.100 1 101 9.4E-27 T 13-10-2018 AP3564_13065 4772fd38c606f2761ec5dde3f0ad217d 419 Gene3D G3DSA:3.30.559.10 187 418 3.9E-92 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 AP3564_13065 4772fd38c606f2761ec5dde3f0ad217d 419 SUPERFAMILY SSF51230 2 91 3.8E-27 T 13-10-2018 IPR011053 Single hybrid motif AP3564_13065 4772fd38c606f2761ec5dde3f0ad217d 419 Pfam PF00364 Biotin-requiring enzyme 3 75 6.7E-23 T 13-10-2018 IPR000089 Biotin/lipoyl attachment AP3564_13065 4772fd38c606f2761ec5dde3f0ad217d 419 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 26 55 - T 13-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AP3564_13065 4772fd38c606f2761ec5dde3f0ad217d 419 SUPERFAMILY SSF47005 117 158 4.84E-8 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AP3564_13065 4772fd38c606f2761ec5dde3f0ad217d 419 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 188 417 1.5E-82 T 13-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 AP3564_16170 f0f03a6bd52ca13f06f0729f943423db 509 Pfam PF00460 Flagella basal body rod protein 5 35 6.8E-12 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AP3564_16170 f0f03a6bd52ca13f06f0729f943423db 509 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site AP3564_16170 f0f03a6bd52ca13f06f0729f943423db 509 SUPERFAMILY SSF117143 92 469 2.62E-29 T 13-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like AP3564_16170 f0f03a6bd52ca13f06f0729f943423db 509 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 420 507 1.5E-21 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain AP3564_16170 f0f03a6bd52ca13f06f0729f943423db 509 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 136 490 2.3E-38 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G AP3564_16170 f0f03a6bd52ca13f06f0729f943423db 509 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 3 104 1.5E-28 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G AP3564_08220 b834fda153fdcc0a7e81777928a3f7bd 112 Pfam PF03734 L,D-transpeptidase catalytic domain 4 110 8.5E-22 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AP3564_08220 b834fda153fdcc0a7e81777928a3f7bd 112 Gene3D G3DSA:2.40.440.10 1 112 1.1E-43 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AP3564_08220 b834fda153fdcc0a7e81777928a3f7bd 112 SUPERFAMILY SSF141523 2 111 7.32E-36 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AP3564_10690 ecb40d2ef5d21b5c1a2c747b9124931d 103 Gene3D G3DSA:1.20.58.1000 2 103 6.3E-40 T 13-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily AP3564_10690 ecb40d2ef5d21b5c1a2c747b9124931d 103 Pfam PF02583 Metal-sensitive transcriptional repressor 22 99 2.0E-31 T 13-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 AP3564_06275 64cbc7305e69d463f488493452c82b42 485 Gene3D G3DSA:3.30.70.2740 345 425 5.6E-8 T 13-10-2018 AP3564_06275 64cbc7305e69d463f488493452c82b42 485 Gene3D G3DSA:3.30.43.10 2 99 1.2E-25 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 AP3564_06275 64cbc7305e69d463f488493452c82b42 485 SUPERFAMILY SSF56176 10 224 4.21E-69 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AP3564_06275 64cbc7305e69d463f488493452c82b42 485 Gene3D G3DSA:1.10.45.10 426 465 6.7E-6 T 13-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 AP3564_06275 64cbc7305e69d463f488493452c82b42 485 Pfam PF02913 FAD linked oxidases, C-terminal domain 224 465 5.7E-62 T 13-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 AP3564_06275 64cbc7305e69d463f488493452c82b42 485 Gene3D G3DSA:3.30.465.10 102 222 3.2E-38 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AP3564_06275 64cbc7305e69d463f488493452c82b42 485 Pfam PF01565 FAD binding domain 48 186 6.9E-41 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AP3564_06275 64cbc7305e69d463f488493452c82b42 485 Gene3D G3DSA:3.30.70.2190 224 335 8.7E-6 T 13-10-2018 AP3564_06275 64cbc7305e69d463f488493452c82b42 485 SUPERFAMILY SSF55103 227 471 3.43E-66 T 13-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AP3564_09560 892f36a85536f3761f23f79a37dbb91a 529 Pfam PF01293 Phosphoenolpyruvate carboxykinase 19 482 5.1E-226 T 13-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 AP3564_09560 892f36a85536f3761f23f79a37dbb91a 529 Gene3D G3DSA:3.40.449.10 28 214 1.5E-227 T 13-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 AP3564_09560 892f36a85536f3761f23f79a37dbb91a 529 PIRSF PIRSF006294 3 528 9.8E-243 T 13-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 AP3564_09560 892f36a85536f3761f23f79a37dbb91a 529 Hamap MF_00453 Phosphoenolpyruvate carboxykinase (ATP) [pckA]. 12 528 56.249 T 13-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 AP3564_09560 892f36a85536f3761f23f79a37dbb91a 529 Gene3D G3DSA:2.170.8.10 38 331 1.5E-227 T 13-10-2018 AP3564_09560 892f36a85536f3761f23f79a37dbb91a 529 TIGRFAM TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP) 5 527 1.5E-251 T 13-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 AP3564_09560 892f36a85536f3761f23f79a37dbb91a 529 SUPERFAMILY SSF53795 215 525 1.69E-137 T 13-10-2018 AP3564_09560 892f36a85536f3761f23f79a37dbb91a 529 Gene3D G3DSA:3.90.228.20 215 514 1.5E-227 T 13-10-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 AP3564_09560 892f36a85536f3761f23f79a37dbb91a 529 SUPERFAMILY SSF68923 12 212 8.2E-79 T 13-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 AP3564_04450 60871de65dfa6aa427d71ca968ddbe79 229 Gene3D G3DSA:3.40.630.30 18 229 3.7E-55 T 13-10-2018 AP3564_04450 60871de65dfa6aa427d71ca968ddbe79 229 Pfam PF00583 Acetyltransferase (GNAT) family 37 157 3.0E-10 T 13-10-2018 IPR000182 GNAT domain AP3564_04450 60871de65dfa6aa427d71ca968ddbe79 229 SUPERFAMILY SSF55729 26 158 3.43E-15 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase AP3564_15980 c29c4baf534b2117e369c2537f17c442 305 SUPERFAMILY SSF55120 2 219 3.24E-80 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AP3564_15980 c29c4baf534b2117e369c2537f17c442 305 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 23 177 2.9E-58 T 13-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 AP3564_15980 c29c4baf534b2117e369c2537f17c442 305 Gene3D G3DSA:3.30.2350.10 1 241 2.6E-91 T 13-10-2018 AP3564_15980 c29c4baf534b2117e369c2537f17c442 305 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 178 225 5.6E-10 T 13-10-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 AP3564_15980 c29c4baf534b2117e369c2537f17c442 305 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 1 214 2.6E-85 T 13-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 AP3564_15980 c29c4baf534b2117e369c2537f17c442 305 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 1 301 19.7 T 13-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 AP3564_12585 aa26101644712691be1119d5b9ec7c19 325 SUPERFAMILY SSF52922 188 325 2.22E-42 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AP3564_12585 aa26101644712691be1119d5b9ec7c19 325 Gene3D G3DSA:3.40.50.970 1 192 1.1E-82 T 13-10-2018 AP3564_12585 aa26101644712691be1119d5b9ec7c19 325 Pfam PF02780 Transketolase, C-terminal domain 194 315 4.3E-39 T 13-10-2018 IPR033248 Transketolase, C-terminal domain AP3564_12585 aa26101644712691be1119d5b9ec7c19 325 SMART SM00861 4 179 7.6E-68 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AP3564_12585 aa26101644712691be1119d5b9ec7c19 325 SUPERFAMILY SSF52518 3 193 2.53E-69 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold AP3564_12585 aa26101644712691be1119d5b9ec7c19 325 Pfam PF02779 Transketolase, pyrimidine binding domain 3 178 1.4E-41 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AP3564_12585 aa26101644712691be1119d5b9ec7c19 325 Gene3D G3DSA:3.40.50.920 193 325 1.1E-47 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AP3564_07985 5e990a35d1e9ababa691adab5141b490 427 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 379 390 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AP3564_07985 5e990a35d1e9ababa691adab5141b490 427 Gene3D G3DSA:3.20.20.70 4 304 1.9E-104 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_07985 5e990a35d1e9ababa691adab5141b490 427 Gene3D G3DSA:3.30.70.20 305 415 3.3E-22 T 13-10-2018 AP3564_07985 5e990a35d1e9ababa691adab5141b490 427 TIGRFAM TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein 4 317 1.7E-56 T 13-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 AP3564_07985 5e990a35d1e9ababa691adab5141b490 427 Pfam PF14697 4Fe-4S dicluster domain 335 397 4.7E-23 T 13-10-2018 AP3564_07985 5e990a35d1e9ababa691adab5141b490 427 SUPERFAMILY SSF51395 1 318 1.17E-71 T 13-10-2018 AP3564_07985 5e990a35d1e9ababa691adab5141b490 427 SUPERFAMILY SSF54862 335 411 6.98E-12 T 13-10-2018 AP3564_07985 5e990a35d1e9ababa691adab5141b490 427 Pfam PF01180 Dihydroorotate dehydrogenase 87 302 3.2E-31 T 13-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 AP3564_04340 2fb42be5201a936ae7bdaa74fa30090f 230 Gene3D G3DSA:3.40.50.300 1 228 1.1E-59 T 13-10-2018 AP3564_04340 2fb42be5201a936ae7bdaa74fa30090f 230 SUPERFAMILY SSF52540 2 222 3.13E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_04340 2fb42be5201a936ae7bdaa74fa30090f 230 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_04340 2fb42be5201a936ae7bdaa74fa30090f 230 Pfam PF00005 ABC transporter 17 158 5.3E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_04340 2fb42be5201a936ae7bdaa74fa30090f 230 SMART SM00382 26 206 9.6E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_03885 0695a64760d3a41e151a735224551d09 472 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 341 350 - T 13-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AP3564_03885 0695a64760d3a41e151a735224551d09 472 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 2 468 4.8E-260 T 13-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 AP3564_03885 0695a64760d3a41e151a735224551d09 472 SUPERFAMILY SSF52540 83 353 2.02E-89 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_03885 0695a64760d3a41e151a735224551d09 472 Gene3D G3DSA:1.10.1140.10 353 471 4.9E-57 T 13-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AP3564_03885 0695a64760d3a41e151a735224551d09 472 SUPERFAMILY SSF47917 353 468 7.32E-53 T 13-10-2018 AP3564_03885 0695a64760d3a41e151a735224551d09 472 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 5 79 1.3E-25 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AP3564_03885 0695a64760d3a41e151a735224551d09 472 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 468 57.283 T 13-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 AP3564_03885 0695a64760d3a41e151a735224551d09 472 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 137 350 7.9E-68 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AP3564_03885 0695a64760d3a41e151a735224551d09 472 SMART SM00382 149 334 5.6E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_03885 0695a64760d3a41e151a735224551d09 472 Gene3D G3DSA:2.40.10.170 1 81 3.1E-33 T 13-10-2018 AP3564_03885 0695a64760d3a41e151a735224551d09 472 Gene3D G3DSA:3.40.50.300 83 351 7.4E-116 T 13-10-2018 AP3564_03885 0695a64760d3a41e151a735224551d09 472 SUPERFAMILY SSF50615 2 81 5.49E-28 T 13-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AP3564_05760 b102f88ad3f6e28296c3f18360f636eb 144 SUPERFAMILY SSF54686 1 137 1.7E-59 T 13-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 AP3564_05760 b102f88ad3f6e28296c3f18360f636eb 144 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 127 4.2E-64 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05760 b102f88ad3f6e28296c3f18360f636eb 144 Gene3D G3DSA:3.90.1170.10 1 143 3.0E-56 T 13-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 AP3564_05760 b102f88ad3f6e28296c3f18360f636eb 144 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 2.7E-53 T 13-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 AP3564_05760 b102f88ad3f6e28296c3f18360f636eb 144 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 13-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05760 b102f88ad3f6e28296c3f18360f636eb 144 PRINTS PR00060 Ribosomal protein L16 signature 24 36 8.4E-41 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05760 b102f88ad3f6e28296c3f18360f636eb 144 PRINTS PR00060 Ribosomal protein L16 signature 58 87 8.4E-41 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05760 b102f88ad3f6e28296c3f18360f636eb 144 PRINTS PR00060 Ribosomal protein L16 signature 88 117 8.4E-41 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05760 b102f88ad3f6e28296c3f18360f636eb 144 PRINTS PR00060 Ribosomal protein L16 signature 42 53 8.4E-41 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05760 b102f88ad3f6e28296c3f18360f636eb 144 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 41.785 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05760 b102f88ad3f6e28296c3f18360f636eb 144 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 13-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_18235 ff84eb84202f94fbcdba959df220a1a6 366 SUPERFAMILY SSF51717 16 212 9.42E-17 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AP3564_18235 ff84eb84202f94fbcdba959df220a1a6 366 Pfam PF04551 GcpE protein 10 351 1.4E-141 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 AP3564_18235 ff84eb84202f94fbcdba959df220a1a6 366 Gene3D G3DSA:3.30.413.10 261 359 1.1E-35 T 13-10-2018 AP3564_18235 ff84eb84202f94fbcdba959df220a1a6 366 Gene3D G3DSA:3.20.20.20 1 259 1.1E-111 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AP3564_18235 ff84eb84202f94fbcdba959df220a1a6 366 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 5 355 35.197 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 AP3564_18235 ff84eb84202f94fbcdba959df220a1a6 366 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 7 350 5.8E-133 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 AP3564_18235 ff84eb84202f94fbcdba959df220a1a6 366 SUPERFAMILY SSF56014 264 356 5.52E-14 T 13-10-2018 AP3564_18235 ff84eb84202f94fbcdba959df220a1a6 366 PIRSF PIRSF004640 1 363 1.6E-157 T 13-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 AP3564_10210 a4d0569d390a656afe06ab5686054c37 198 Pfam PF02581 Thiamine monophosphate synthase 5 179 2.9E-41 T 13-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AP3564_10210 a4d0569d390a656afe06ab5686054c37 198 SUPERFAMILY SSF51391 3 193 7.85E-50 T 13-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AP3564_10210 a4d0569d390a656afe06ab5686054c37 198 Gene3D G3DSA:3.20.20.70 1 196 5.0E-58 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_05350 76a1dad21beaf537996e502cc778ce27 371 SUPERFAMILY SSF53098 88 359 2.58E-35 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_05350 76a1dad21beaf537996e502cc778ce27 371 Pfam PF01609 Transposase DDE domain 121 329 5.0E-29 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_05350 76a1dad21beaf537996e502cc778ce27 371 Pfam PF14294 Domain of unknown function (DUF4372) 8 76 6.3E-8 T 13-10-2018 IPR025399 Domain of unknown function DUF4372 AP3564_17620 27e6510db04d32476f2d2d8a392357f3 260 Gene3D G3DSA:3.40.50.150 67 240 3.9E-32 T 13-10-2018 AP3564_17620 27e6510db04d32476f2d2d8a392357f3 260 Pfam PF13649 Methyltransferase domain 94 197 1.2E-19 T 13-10-2018 AP3564_17620 27e6510db04d32476f2d2d8a392357f3 260 SUPERFAMILY SSF53335 68 228 8.44E-32 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_04820 60c83de7b272c67af6d70bfd59f5615b 280 Pfam PF02195 ParB-like nuclease domain 32 118 3.1E-30 T 13-10-2018 IPR003115 ParB/Sulfiredoxin AP3564_04820 60c83de7b272c67af6d70bfd59f5615b 280 Gene3D G3DSA:3.90.1530.30 43 104 8.2E-27 T 13-10-2018 AP3564_04820 60c83de7b272c67af6d70bfd59f5615b 280 Hamap MF_02015 Nucleoid occlusion protein [noc]. 3 280 37.436 T 13-10-2018 IPR023705 Nucleoid occlusion protein AP3564_04820 60c83de7b272c67af6d70bfd59f5615b 280 SUPERFAMILY SSF110849 29 164 9.42E-35 T 13-10-2018 IPR036086 ParB/Sulfiredoxin superfamily AP3564_04820 60c83de7b272c67af6d70bfd59f5615b 280 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 26 205 4.2E-63 T 13-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 AP3564_04820 60c83de7b272c67af6d70bfd59f5615b 280 SMART SM00470 30 119 2.9E-38 T 13-10-2018 IPR003115 ParB/Sulfiredoxin AP3564_04820 60c83de7b272c67af6d70bfd59f5615b 280 Gene3D G3DSA:1.10.10.2830 106 219 8.9E-36 T 13-10-2018 AP3564_04820 60c83de7b272c67af6d70bfd59f5615b 280 TIGRFAM TIGR04285 nucleoid_noc: nucleoid occlusion protein 28 280 7.1E-115 T 13-10-2018 IPR023705 Nucleoid occlusion protein AP3564_17590 1590e161ade616f7acd6790bf1ac5f0e 201 Gene3D G3DSA:1.10.357.10 62 199 1.3E-15 T 13-10-2018 AP3564_17590 1590e161ade616f7acd6790bf1ac5f0e 201 SUPERFAMILY SSF48498 91 198 1.14E-8 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AP3564_17590 1590e161ade616f7acd6790bf1ac5f0e 201 Gene3D G3DSA:1.10.10.60 2 61 9.3E-21 T 13-10-2018 AP3564_17590 1590e161ade616f7acd6790bf1ac5f0e 201 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 19 32 8.3E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_17590 1590e161ade616f7acd6790bf1ac5f0e 201 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 8.3E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_17590 1590e161ade616f7acd6790bf1ac5f0e 201 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 65 1.4E-17 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_17590 1590e161ade616f7acd6790bf1ac5f0e 201 SUPERFAMILY SSF46689 6 86 6.67E-22 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_13800 d623c8c40ce9e10e5b9cda7634a7c091 450 Pfam PF01554 MatE 16 176 2.7E-31 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AP3564_13800 d623c8c40ce9e10e5b9cda7634a7c091 450 Pfam PF01554 MatE 241 401 8.6E-30 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AP3564_13800 d623c8c40ce9e10e5b9cda7634a7c091 450 PIRSF PIRSF006603 3 449 6.1E-81 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AP3564_13800 d623c8c40ce9e10e5b9cda7634a7c091 450 TIGRFAM TIGR00797 matE: MATE efflux family protein 16 415 2.9E-60 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AP3564_12730 6e92452e5e2a019d4565a326aa5e92e5 442 SUPERFAMILY SSF52540 25 422 1.96E-26 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_12730 6e92452e5e2a019d4565a326aa5e92e5 442 SMART SM00670 3 135 9.1E-28 T 13-10-2018 IPR002716 PIN domain AP3564_12730 6e92452e5e2a019d4565a326aa5e92e5 442 Gene3D G3DSA:3.40.50.1010 2 150 1.6E-22 T 13-10-2018 AP3564_12730 6e92452e5e2a019d4565a326aa5e92e5 442 Pfam PF13638 PIN domain 5 147 3.0E-34 T 13-10-2018 IPR002716 PIN domain AP3564_12730 6e92452e5e2a019d4565a326aa5e92e5 442 Pfam PF02562 PhoH-like protein 233 436 2.0E-55 T 13-10-2018 IPR003714 PhoH-like protein GO:0005524 AP3564_12730 6e92452e5e2a019d4565a326aa5e92e5 442 Gene3D G3DSA:3.40.50.300 231 441 5.6E-70 T 13-10-2018 AP3564_16550 7cfeefe9c7fc5c8a09b1346ef6c8f396 425 Gene3D G3DSA:3.20.20.140 54 366 6.8E-153 T 13-10-2018 AP3564_16550 7cfeefe9c7fc5c8a09b1346ef6c8f396 425 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 16 422 9.5E-148 T 13-10-2018 AP3564_16550 7cfeefe9c7fc5c8a09b1346ef6c8f396 425 ProSitePatterns PS00483 Dihydroorotase signature 2. 302 313 - T 13-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_16550 7cfeefe9c7fc5c8a09b1346ef6c8f396 425 Hamap MF_00220_B Dihydroorotase [pyrC]. 3 423 45.072 T 13-10-2018 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_16550 7cfeefe9c7fc5c8a09b1346ef6c8f396 425 ProSitePatterns PS00482 Dihydroorotase signature 1. 57 65 - T 13-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_16550 7cfeefe9c7fc5c8a09b1346ef6c8f396 425 Pfam PF01979 Amidohydrolase family 54 420 1.5E-49 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AP3564_16550 7cfeefe9c7fc5c8a09b1346ef6c8f396 425 SUPERFAMILY SSF51338 1 425 1.79E-25 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AP3564_16550 7cfeefe9c7fc5c8a09b1346ef6c8f396 425 Gene3D G3DSA:2.30.40.10 7 419 6.8E-153 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AP3564_16550 7cfeefe9c7fc5c8a09b1346ef6c8f396 425 SUPERFAMILY SSF51556 54 366 4.09E-112 T 13-10-2018 IPR032466 Metal-dependent hydrolase AP3564_05685 a7b0cbf3c9b7e7168cbcf72de68ab7b6 1192 Pfam PF04563 RNA polymerase beta subunit 28 454 1.2E-30 T 13-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_05685 a7b0cbf3c9b7e7168cbcf72de68ab7b6 1192 Gene3D G3DSA:3.90.1100.10 388 594 1.4E-75 T 13-10-2018 AP3564_05685 a7b0cbf3c9b7e7168cbcf72de68ab7b6 1192 Gene3D G3DSA:2.40.50.150 791 930 2.2E-61 T 13-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_05685 a7b0cbf3c9b7e7168cbcf72de68ab7b6 1192 Gene3D G3DSA:3.90.1800.10 1057 1110 1.1E-10 T 13-10-2018 AP3564_05685 a7b0cbf3c9b7e7168cbcf72de68ab7b6 1192 Gene3D G3DSA:2.40.270.10 752 790 3.7E-7 T 13-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_05685 a7b0cbf3c9b7e7168cbcf72de68ab7b6 1192 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 204 896 0.0 T 13-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_05685 a7b0cbf3c9b7e7168cbcf72de68ab7b6 1192 Gene3D G3DSA:2.40.50.100 672 751 4.7E-29 T 13-10-2018 AP3564_05685 a7b0cbf3c9b7e7168cbcf72de68ab7b6 1192 Pfam PF04561 RNA polymerase Rpb2, domain 2 368 410 2.6E-7 T 13-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_05685 a7b0cbf3c9b7e7168cbcf72de68ab7b6 1192 Pfam PF04561 RNA polymerase Rpb2, domain 2 140 290 1.6E-26 T 13-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_05685 a7b0cbf3c9b7e7168cbcf72de68ab7b6 1192 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 15 1147 12.695 T 13-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_05685 a7b0cbf3c9b7e7168cbcf72de68ab7b6 1192 Gene3D G3DSA:2.40.270.10 982 1047 3.8E-25 T 13-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_05685 a7b0cbf3c9b7e7168cbcf72de68ab7b6 1192 Pfam PF04565 RNA polymerase Rpb2, domain 3 469 537 3.7E-31 T 13-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_05685 a7b0cbf3c9b7e7168cbcf72de68ab7b6 1192 Pfam PF04560 RNA polymerase Rpb2, domain 7 1071 1145 1.8E-27 T 13-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_05685 a7b0cbf3c9b7e7168cbcf72de68ab7b6 1192 SUPERFAMILY SSF64484 13 1156 0.0 T 13-10-2018 AP3564_05685 a7b0cbf3c9b7e7168cbcf72de68ab7b6 1192 Gene3D G3DSA:3.90.1100.10 603 671 1.0E-19 T 13-10-2018 AP3564_05685 a7b0cbf3c9b7e7168cbcf72de68ab7b6 1192 Gene3D G3DSA:3.90.1110.10 153 260 1.2E-6 T 13-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_05685 a7b0cbf3c9b7e7168cbcf72de68ab7b6 1192 Gene3D G3DSA:3.90.1100.10 20 152 6.2E-55 T 13-10-2018 AP3564_05685 a7b0cbf3c9b7e7168cbcf72de68ab7b6 1192 Pfam PF00562 RNA polymerase Rpb2, domain 6 676 1069 5.7E-168 T 13-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_05685 a7b0cbf3c9b7e7168cbcf72de68ab7b6 1192 Pfam PF10385 RNA polymerase beta subunit external 1 domain 547 614 3.8E-26 T 13-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_05685 a7b0cbf3c9b7e7168cbcf72de68ab7b6 1192 ProSitePatterns PS01166 RNA polymerases beta chain signature. 922 934 - T 13-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AP3564_01710 00703204ac00d03e1a76c884f451b36e 103 SUPERFAMILY SSF81301 8 101 7.2E-17 T 13-10-2018 AP3564_01710 00703204ac00d03e1a76c884f451b36e 103 Gene3D G3DSA:3.30.460.10 1 103 7.1E-24 T 13-10-2018 AP3564_01710 00703204ac00d03e1a76c884f451b36e 103 Pfam PF01909 Nucleotidyltransferase domain 20 94 1.4E-7 T 13-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 AP3564_19255 aae1efbf3d955ea2ac8c6d934a5cee6a 119 Pfam PF00453 Ribosomal protein L20 3 109 1.9E-50 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_19255 aae1efbf3d955ea2ac8c6d934a5cee6a 119 Gene3D G3DSA:1.10.720.90 2 55 2.7E-25 T 13-10-2018 AP3564_19255 aae1efbf3d955ea2ac8c6d934a5cee6a 119 SUPERFAMILY SSF74731 3 116 4.45E-51 T 13-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_19255 aae1efbf3d955ea2ac8c6d934a5cee6a 119 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_19255 aae1efbf3d955ea2ac8c6d934a5cee6a 119 Gene3D G3DSA:1.10.1900.20 56 119 1.0E-29 T 13-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_19255 aae1efbf3d955ea2ac8c6d934a5cee6a 119 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 1.7E-51 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_19255 aae1efbf3d955ea2ac8c6d934a5cee6a 119 PRINTS PR00062 Ribosomal protein L20 signature 12 41 8.6E-42 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_19255 aae1efbf3d955ea2ac8c6d934a5cee6a 119 PRINTS PR00062 Ribosomal protein L20 signature 42 71 8.6E-42 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_19255 aae1efbf3d955ea2ac8c6d934a5cee6a 119 PRINTS PR00062 Ribosomal protein L20 signature 75 101 8.6E-42 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_19255 aae1efbf3d955ea2ac8c6d934a5cee6a 119 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 20 70 4.0E-13 T 13-10-2018 AP3564_19255 aae1efbf3d955ea2ac8c6d934a5cee6a 119 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 31.109 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_18980 0f9fc64bc0c78454dbdb8ada9176ae27 427 Pfam PF00202 Aminotransferase class-III 32 397 2.7E-79 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AP3564_18980 0f9fc64bc0c78454dbdb8ada9176ae27 427 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 5 426 104.767 T 13-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 AP3564_18980 0f9fc64bc0c78454dbdb8ada9176ae27 427 SUPERFAMILY SSF53383 1 424 2.95E-132 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_18980 0f9fc64bc0c78454dbdb8ada9176ae27 427 Gene3D G3DSA:3.40.640.10 71 318 1.1E-182 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_18980 0f9fc64bc0c78454dbdb8ada9176ae27 427 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 6 424 2.2E-201 T 13-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 AP3564_18980 0f9fc64bc0c78454dbdb8ada9176ae27 427 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 236 272 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AP3564_18980 0f9fc64bc0c78454dbdb8ada9176ae27 427 Gene3D G3DSA:3.90.1150.10 9 420 1.1E-182 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_02320 7528799525af4edbd875fddba24a72c3 110 Gene3D G3DSA:1.10.287.880 1 50 6.6E-26 T 13-10-2018 AP3564_02320 7528799525af4edbd875fddba24a72c3 110 Pfam PF08838 Protein of unknown function (DUF1811) 3 101 8.7E-45 T 13-10-2018 IPR014938 Protein of unknown function DUF1811 AP3564_02320 7528799525af4edbd875fddba24a72c3 110 SUPERFAMILY SSF101697 1 104 2.22E-47 T 13-10-2018 IPR036289 Hypothetical protein YfhH AP3564_02320 7528799525af4edbd875fddba24a72c3 110 Gene3D G3DSA:2.30.30.340 51 108 4.0E-25 T 13-10-2018 AP3564_15875 56d7e0b5145918f0c0f5e9799f44c2b2 85 Gene3D G3DSA:1.10.760.20 1 82 1.7E-33 T 13-10-2018 IPR038292 YmfJ/YflH superfamily AP3564_15875 56d7e0b5145918f0c0f5e9799f44c2b2 85 PIRSF PIRSF004764 1 85 6.5E-32 T 13-10-2018 IPR024702 Uncharacterised conserved protein YmfJ AP3564_15875 56d7e0b5145918f0c0f5e9799f44c2b2 85 Pfam PF11588 Protein of unknown function (DUF3243) 2 79 3.8E-36 T 13-10-2018 IPR021637 Protein of unknown function DUF3243 AP3564_17585 585f5d6983470cc9a9e57fe76cc8d8ce 306 SUPERFAMILY SSF51430 2 298 1.31E-78 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AP3564_17585 585f5d6983470cc9a9e57fe76cc8d8ce 306 Pfam PF00248 Aldo/keto reductase family 15 292 4.0E-62 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain AP3564_17585 585f5d6983470cc9a9e57fe76cc8d8ce 306 PRINTS PR00069 Aldo-keto reductase signature 103 121 3.4E-6 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AP3564_17585 585f5d6983470cc9a9e57fe76cc8d8ce 306 PRINTS PR00069 Aldo-keto reductase signature 134 151 3.4E-6 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AP3564_17585 585f5d6983470cc9a9e57fe76cc8d8ce 306 PRINTS PR00069 Aldo-keto reductase signature 37 61 3.4E-6 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AP3564_17585 585f5d6983470cc9a9e57fe76cc8d8ce 306 Gene3D G3DSA:3.20.20.100 1 296 8.5E-109 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AP3564_12370 e7d9df7554f63c8adf3f2ba538df77ff 580 Gene3D G3DSA:3.20.20.140 70 311 5.7E-130 T 13-10-2018 AP3564_12370 e7d9df7554f63c8adf3f2ba538df77ff 580 Hamap MF_01518 Adenine deaminase [ade]. 20 573 38.609 T 13-10-2018 IPR006679 Adenine deaminase GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 AP3564_12370 e7d9df7554f63c8adf3f2ba538df77ff 580 Gene3D G3DSA:2.30.40.10 12 348 5.7E-130 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AP3564_12370 e7d9df7554f63c8adf3f2ba538df77ff 580 Pfam PF13382 Adenine deaminase C-terminal domain 402 570 9.7E-62 T 13-10-2018 IPR026912 Adenine deaminase C-terminal domain KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 AP3564_12370 e7d9df7554f63c8adf3f2ba538df77ff 580 SUPERFAMILY SSF51338 14 352 3.12E-20 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AP3564_12370 e7d9df7554f63c8adf3f2ba538df77ff 580 Pfam PF01979 Amidohydrolase family 66 346 3.8E-35 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AP3564_12370 e7d9df7554f63c8adf3f2ba538df77ff 580 SUPERFAMILY SSF51556 70 316 2.72E-42 T 13-10-2018 IPR032466 Metal-dependent hydrolase AP3564_12370 e7d9df7554f63c8adf3f2ba538df77ff 580 TIGRFAM TIGR01178 ade: adenine deaminase 20 573 4.2E-200 T 13-10-2018 IPR006679 Adenine deaminase GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 AP3564_07230 1f5b9f26b597725b5d05061b08846834 248 SUPERFAMILY SSF50891 104 234 6.83E-50 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily AP3564_07230 1f5b9f26b597725b5d05061b08846834 248 TIGRFAM TIGR00370 TIGR00370: sensor histidine kinase inhibitor, KipI family 9 226 2.5E-75 T 13-10-2018 IPR010016 KipI family KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 AP3564_07230 1f5b9f26b597725b5d05061b08846834 248 SMART SM00796 4 218 6.9E-101 T 13-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D AP3564_07230 1f5b9f26b597725b5d05061b08846834 248 Gene3D G3DSA:2.40.100.10 102 242 1.4E-62 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily AP3564_07230 1f5b9f26b597725b5d05061b08846834 248 SUPERFAMILY SSF160467 7 109 2.22E-15 T 13-10-2018 AP3564_07230 1f5b9f26b597725b5d05061b08846834 248 Gene3D G3DSA:3.30.1360.40 1 98 1.9E-25 T 13-10-2018 AP3564_07230 1f5b9f26b597725b5d05061b08846834 248 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 6 218 1.3E-76 T 13-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D AP3564_15040 cad792355a56a5bd6c5b88a98dc9fd6d 389 Pfam PF01610 Transposase 150 381 6.7E-58 T 13-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain AP3564_15040 cad792355a56a5bd6c5b88a98dc9fd6d 389 Pfam PF13542 Helix-turn-helix domain of transposase family ISL3 89 138 3.6E-10 T 13-10-2018 IPR032877 Transposase IS204/IS1001/IS1096/IS1165, helix-turn-helix domain AP3564_15785 c7a8a098468219777ef358e70dbb9448 316 TIGRFAM TIGR02881 spore_V_K: stage V sporulation protein K 51 312 7.3E-135 T 13-10-2018 IPR014232 Sporulation stage V, protein K AP3564_15785 c7a8a098468219777ef358e70dbb9448 316 PRINTS PR00819 CbxX/CfqX superfamily signature 94 109 3.5E-61 T 13-10-2018 IPR000641 CbxX/CfqX GO:0005524 AP3564_15785 c7a8a098468219777ef358e70dbb9448 316 PRINTS PR00819 CbxX/CfqX superfamily signature 132 146 3.5E-61 T 13-10-2018 IPR000641 CbxX/CfqX GO:0005524 AP3564_15785 c7a8a098468219777ef358e70dbb9448 316 PRINTS PR00819 CbxX/CfqX superfamily signature 176 188 3.5E-61 T 13-10-2018 IPR000641 CbxX/CfqX GO:0005524 AP3564_15785 c7a8a098468219777ef358e70dbb9448 316 PRINTS PR00819 CbxX/CfqX superfamily signature 214 233 3.5E-61 T 13-10-2018 IPR000641 CbxX/CfqX GO:0005524 AP3564_15785 c7a8a098468219777ef358e70dbb9448 316 PRINTS PR00819 CbxX/CfqX superfamily signature 274 286 3.5E-61 T 13-10-2018 IPR000641 CbxX/CfqX GO:0005524 AP3564_15785 c7a8a098468219777ef358e70dbb9448 316 PRINTS PR00819 CbxX/CfqX superfamily signature 146 165 3.5E-61 T 13-10-2018 IPR000641 CbxX/CfqX GO:0005524 AP3564_15785 c7a8a098468219777ef358e70dbb9448 316 PRINTS PR00819 CbxX/CfqX superfamily signature 54 68 3.5E-61 T 13-10-2018 IPR000641 CbxX/CfqX GO:0005524 AP3564_15785 c7a8a098468219777ef358e70dbb9448 316 PRINTS PR00819 CbxX/CfqX superfamily signature 197 214 3.5E-61 T 13-10-2018 IPR000641 CbxX/CfqX GO:0005524 AP3564_15785 c7a8a098468219777ef358e70dbb9448 316 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 95 225 2.6E-19 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AP3564_15785 c7a8a098468219777ef358e70dbb9448 316 Gene3D G3DSA:1.10.8.60 227 315 1.8E-19 T 13-10-2018 AP3564_15785 c7a8a098468219777ef358e70dbb9448 316 SMART SM00382 91 229 1.3E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_15785 c7a8a098468219777ef358e70dbb9448 316 SUPERFAMILY SSF52540 58 296 4.83E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_15785 c7a8a098468219777ef358e70dbb9448 316 Gene3D G3DSA:3.40.50.300 28 226 5.6E-58 T 13-10-2018 AP3564_12420 4e619e3a990ddc0eb96a4ab93671d4cc 311 Gene3D G3DSA:3.40.50.300 1 234 4.1E-58 T 13-10-2018 AP3564_12420 4e619e3a990ddc0eb96a4ab93671d4cc 311 SMART SM00382 30 218 5.1E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_12420 4e619e3a990ddc0eb96a4ab93671d4cc 311 Pfam PF00005 ABC transporter 22 161 2.1E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_12420 4e619e3a990ddc0eb96a4ab93671d4cc 311 Pfam PF13732 Domain of unknown function (DUF4162) 215 296 2.9E-10 T 13-10-2018 IPR025302 Domain of unknown function DUF4162 AP3564_12420 4e619e3a990ddc0eb96a4ab93671d4cc 311 SUPERFAMILY SSF52540 4 225 2.48E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_06820 49bf106ddc6851a3df0c78d994eff621 120 SUPERFAMILY SSF52091 5 115 1.08E-19 T 13-10-2018 IPR036513 STAS domain superfamily AP3564_06820 49bf106ddc6851a3df0c78d994eff621 120 Pfam PF01740 STAS domain 13 98 5.1E-11 T 13-10-2018 IPR002645 STAS domain AP3564_06820 49bf106ddc6851a3df0c78d994eff621 120 Gene3D G3DSA:3.30.750.24 3 119 1.1E-31 T 13-10-2018 IPR036513 STAS domain superfamily AP3564_12655 28091ac27b731b03cd663c3dc07d0c04 278 Pfam PF00665 Integrase core domain 107 221 2.1E-34 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AP3564_12655 28091ac27b731b03cd663c3dc07d0c04 278 Gene3D G3DSA:3.30.420.10 105 267 3.5E-17 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AP3564_12655 28091ac27b731b03cd663c3dc07d0c04 278 Pfam PF13276 HTH-like domain 26 83 2.6E-16 T 13-10-2018 IPR025948 HTH-like domain AP3564_12655 28091ac27b731b03cd663c3dc07d0c04 278 SUPERFAMILY SSF53098 100 266 2.4E-42 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_15750 28091ac27b731b03cd663c3dc07d0c04 278 Pfam PF00665 Integrase core domain 107 221 2.1E-34 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AP3564_15750 28091ac27b731b03cd663c3dc07d0c04 278 Gene3D G3DSA:3.30.420.10 105 267 3.5E-17 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AP3564_15750 28091ac27b731b03cd663c3dc07d0c04 278 Pfam PF13276 HTH-like domain 26 83 2.6E-16 T 13-10-2018 IPR025948 HTH-like domain AP3564_15750 28091ac27b731b03cd663c3dc07d0c04 278 SUPERFAMILY SSF53098 100 266 2.4E-42 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_01340 5a323340ea12fc685b0e7246b8fe0ffa 284 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 3 279 8.4E-57 T 13-10-2018 IPR000150 Cof family GO:0016787 AP3564_01340 5a323340ea12fc685b0e7246b8fe0ffa 284 Gene3D G3DSA:3.40.50.1000 2 276 1.7E-77 T 13-10-2018 IPR023214 HAD superfamily AP3564_01340 5a323340ea12fc685b0e7246b8fe0ffa 284 Pfam PF08282 haloacid dehalogenase-like hydrolase 4 279 2.1E-66 T 13-10-2018 AP3564_01340 5a323340ea12fc685b0e7246b8fe0ffa 284 Gene3D G3DSA:3.30.1240.10 80 208 1.7E-77 T 13-10-2018 AP3564_01340 5a323340ea12fc685b0e7246b8fe0ffa 284 ProSitePatterns PS01229 Hypothetical cof family signature 2. 233 255 - T 13-10-2018 AP3564_01340 5a323340ea12fc685b0e7246b8fe0ffa 284 SUPERFAMILY SSF56784 2 283 2.17E-67 T 13-10-2018 IPR036412 HAD-like superfamily AP3564_01340 5a323340ea12fc685b0e7246b8fe0ffa 284 ProSitePatterns PS01228 Hypothetical cof family signature 1. 3 14 - T 13-10-2018 AP3564_01340 5a323340ea12fc685b0e7246b8fe0ffa 284 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 3 252 3.2E-27 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 AP3564_14950 00317b2c99345c8cc9e309c9e8adc6ac 92 Pfam PF03795 YCII-related domain 1 82 2.0E-13 T 13-10-2018 IPR005545 YCII-related AP3564_14950 00317b2c99345c8cc9e309c9e8adc6ac 92 SUPERFAMILY SSF54909 1 85 2.49E-19 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel AP3564_14950 00317b2c99345c8cc9e309c9e8adc6ac 92 Gene3D G3DSA:3.30.70.1060 1 86 2.7E-10 T 13-10-2018 AP3564_12160 16ccde6518864ab570c8af17b28e2831 452 Pfam PF01979 Amidohydrolase family 64 416 2.1E-22 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AP3564_12160 16ccde6518864ab570c8af17b28e2831 452 Gene3D G3DSA:2.30.40.10 17 421 2.7E-114 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AP3564_12160 16ccde6518864ab570c8af17b28e2831 452 Gene3D G3DSA:3.20.20.140 69 377 2.7E-114 T 13-10-2018 AP3564_12160 16ccde6518864ab570c8af17b28e2831 452 SUPERFAMILY SSF51556 68 387 8.51E-73 T 13-10-2018 IPR032466 Metal-dependent hydrolase AP3564_06765 99364d6cd5385d5ec05282b255ba730c 459 Gene3D G3DSA:3.40.50.300 191 434 6.9E-53 T 13-10-2018 AP3564_06765 99364d6cd5385d5ec05282b255ba730c 459 Pfam PF00271 Helicase conserved C-terminal domain 208 316 3.3E-29 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_06765 99364d6cd5385d5ec05282b255ba730c 459 Gene3D G3DSA:3.40.50.300 1 188 2.3E-71 T 13-10-2018 AP3564_06765 99364d6cd5385d5ec05282b255ba730c 459 SUPERFAMILY SSF52540 52 336 4.52E-76 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_06765 99364d6cd5385d5ec05282b255ba730c 459 SMART SM00490 235 316 6.5E-35 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_06765 99364d6cd5385d5ec05282b255ba730c 459 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 130 138 - T 13-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site AP3564_06765 99364d6cd5385d5ec05282b255ba730c 459 SMART SM00487 2 199 4.4E-65 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AP3564_06765 99364d6cd5385d5ec05282b255ba730c 459 Pfam PF00270 DEAD/DEAH box helicase 7 171 7.8E-49 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AP3564_05175 980325543cf7ea3e761eaa853052cf55 75 Pfam PF10955 Protein of unknown function (DUF2757) 1 75 1.4E-35 T 13-10-2018 IPR020115 Anti-sigma-F factor Fin GO:0010468 AP3564_05175 980325543cf7ea3e761eaa853052cf55 75 ProDom PD057826 YABK 4 75 2.0E-26 T 13-10-2018 IPR020115 Anti-sigma-F factor Fin GO:0010468 AP3564_05000 f960aec8cfdc56659a762fa84526fb84 560 SUPERFAMILY SSF52540 31 223 2.33E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_05000 f960aec8cfdc56659a762fa84526fb84 560 Gene3D G3DSA:3.40.50.300 13 177 3.4E-109 T 13-10-2018 AP3564_05000 f960aec8cfdc56659a762fa84526fb84 560 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 41 59 2.9E-5 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 AP3564_05000 f960aec8cfdc56659a762fa84526fb84 560 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 124 142 2.9E-5 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 AP3564_05000 f960aec8cfdc56659a762fa84526fb84 560 SUPERFAMILY SSF48019 244 366 7.94E-26 T 13-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 AP3564_05000 f960aec8cfdc56659a762fa84526fb84 560 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 358 2.0E-148 T 13-10-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 AP3564_05000 f960aec8cfdc56659a762fa84526fb84 560 Gene3D G3DSA:1.10.8.60 8 237 3.4E-109 T 13-10-2018 AP3564_05000 f960aec8cfdc56659a762fa84526fb84 560 Gene3D G3DSA:1.20.272.10 251 367 7.9E-8 T 13-10-2018 AP3564_05000 f960aec8cfdc56659a762fa84526fb84 560 SMART SM00382 37 179 1.9E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_05000 f960aec8cfdc56659a762fa84526fb84 560 Pfam PF13177 DNA polymerase III, delta subunit 20 178 2.0E-46 T 13-10-2018 AP3564_05000 f960aec8cfdc56659a762fa84526fb84 560 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 232 371 1.0E-12 T 13-10-2018 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 AP3564_11240 dd448016b92fdffabf0822f60bb52f6c 291 Pfam PF08223 PaaX-like protein C-terminal domain 166 265 2.1E-27 T 13-10-2018 IPR013225 PaaX-like, C-terminal AP3564_11240 dd448016b92fdffabf0822f60bb52f6c 291 Gene3D G3DSA:1.10.10.10 1 84 8.2E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_11240 dd448016b92fdffabf0822f60bb52f6c 291 PIRSF PIRSF020623 1 288 4.4E-87 T 13-10-2018 IPR011965 Phenylacetic acid degradation operon negative regulatory protein PaaX GO:0006351 AP3564_11240 dd448016b92fdffabf0822f60bb52f6c 291 Pfam PF07848 PaaX-like protein 3 71 8.2E-23 T 13-10-2018 IPR012906 PaaX-like, N-terminal AP3564_11240 dd448016b92fdffabf0822f60bb52f6c 291 SUPERFAMILY SSF46785 19 79 4.54E-5 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_12525 060b8f2d7271abf7da78d8700399d478 405 ProSitePatterns PS00216 Sugar transport proteins signature 1. 278 294 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AP3564_12525 060b8f2d7271abf7da78d8700399d478 405 Gene3D G3DSA:1.20.1250.20 221 400 2.0E-27 T 13-10-2018 AP3564_12525 060b8f2d7271abf7da78d8700399d478 405 SUPERFAMILY SSF103473 12 395 6.28E-60 T 13-10-2018 IPR036259 MFS transporter superfamily AP3564_12525 060b8f2d7271abf7da78d8700399d478 405 Gene3D G3DSA:1.20.1250.20 12 203 6.4E-22 T 13-10-2018 AP3564_12525 060b8f2d7271abf7da78d8700399d478 405 Pfam PF07690 Major Facilitator Superfamily 19 359 2.4E-34 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AP3564_07980 129237e14092f7ac1d51a214b499c72e 451 PRINTS PR00419 Adrenodoxin reductase family signature 196 206 7.3E-18 T 13-10-2018 AP3564_07980 129237e14092f7ac1d51a214b499c72e 451 PRINTS PR00419 Adrenodoxin reductase family signature 154 167 7.3E-18 T 13-10-2018 AP3564_07980 129237e14092f7ac1d51a214b499c72e 451 PRINTS PR00419 Adrenodoxin reductase family signature 131 153 7.3E-18 T 13-10-2018 AP3564_07980 129237e14092f7ac1d51a214b499c72e 451 PRINTS PR00419 Adrenodoxin reductase family signature 264 278 7.3E-18 T 13-10-2018 AP3564_07980 129237e14092f7ac1d51a214b499c72e 451 SUPERFAMILY SSF46548 4 140 1.1E-33 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AP3564_07980 129237e14092f7ac1d51a214b499c72e 451 Gene3D G3DSA:3.50.50.60 125 230 5.6E-14 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_07980 129237e14092f7ac1d51a214b499c72e 451 SUPERFAMILY SSF51971 128 375 2.53E-64 T 13-10-2018 AP3564_07980 129237e14092f7ac1d51a214b499c72e 451 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 10 117 4.9E-41 T 13-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 AP3564_07980 129237e14092f7ac1d51a214b499c72e 451 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 131 431 5.0E-36 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AP3564_07980 129237e14092f7ac1d51a214b499c72e 451 Gene3D G3DSA:1.10.1060.10 1 124 4.0E-43 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AP3564_07980 129237e14092f7ac1d51a214b499c72e 451 Gene3D G3DSA:3.50.50.60 231 374 3.6E-46 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_16105 a3f65bfd2ba609392fba48df8b66cbf8 291 SUPERFAMILY SSF52540 28 272 1.28E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_16105 a3f65bfd2ba609392fba48df8b66cbf8 291 Gene3D G3DSA:3.40.50.300 28 270 8.7E-58 T 13-10-2018 AP3564_16105 a3f65bfd2ba609392fba48df8b66cbf8 291 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 29 268 7.1E-19 T 13-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 AP3564_16105 a3f65bfd2ba609392fba48df8b66cbf8 291 PIRSF PIRSF003092 1 291 2.0E-77 T 13-10-2018 IPR025501 ATP binding protein MinD AP3564_00715 64fdbe57f5779cf4583da2f6bb28dc46 506 Gene3D G3DSA:3.30.300.10 387 506 2.0E-54 T 13-10-2018 AP3564_00715 64fdbe57f5779cf4583da2f6bb28dc46 506 Pfam PF00958 GMP synthase C terminal domain 414 505 8.6E-45 T 13-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 AP3564_00715 64fdbe57f5779cf4583da2f6bb28dc46 506 SUPERFAMILY SSF54810 386 506 4.71E-52 T 13-10-2018 AP3564_00715 64fdbe57f5779cf4583da2f6bb28dc46 506 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 2 188 1.5E-85 T 13-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 AP3564_00715 64fdbe57f5779cf4583da2f6bb28dc46 506 Pfam PF00117 Glutamine amidotransferase class-I 4 184 6.2E-45 T 13-10-2018 IPR017926 Glutamine amidotransferase AP3564_00715 64fdbe57f5779cf4583da2f6bb28dc46 506 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 196 506 7.8E-161 T 13-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 AP3564_00715 64fdbe57f5779cf4583da2f6bb28dc46 506 Gene3D G3DSA:3.40.50.620 194 386 1.3E-78 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AP3564_00715 64fdbe57f5779cf4583da2f6bb28dc46 506 SUPERFAMILY SSF52317 1 221 9.17E-64 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AP3564_00715 64fdbe57f5779cf4583da2f6bb28dc46 506 PRINTS PR00096 Glutamine amidotransferase superfamily signature 73 84 6.8E-8 T 13-10-2018 AP3564_00715 64fdbe57f5779cf4583da2f6bb28dc46 506 PRINTS PR00096 Glutamine amidotransferase superfamily signature 46 55 6.8E-8 T 13-10-2018 AP3564_00715 64fdbe57f5779cf4583da2f6bb28dc46 506 PRINTS PR00096 Glutamine amidotransferase superfamily signature 161 174 6.8E-8 T 13-10-2018 AP3564_00715 64fdbe57f5779cf4583da2f6bb28dc46 506 Gene3D G3DSA:3.40.50.880 1 193 2.6E-59 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AP3564_00715 64fdbe57f5779cf4583da2f6bb28dc46 506 PRINTS PR00097 Anthranilate synthase component II signature 46 55 3.3E-6 T 13-10-2018 AP3564_00715 64fdbe57f5779cf4583da2f6bb28dc46 506 PRINTS PR00097 Anthranilate synthase component II signature 161 174 3.3E-6 T 13-10-2018 AP3564_00715 64fdbe57f5779cf4583da2f6bb28dc46 506 PRINTS PR00097 Anthranilate synthase component II signature 73 84 3.3E-6 T 13-10-2018 AP3564_00715 64fdbe57f5779cf4583da2f6bb28dc46 506 SUPERFAMILY SSF52402 181 399 1.15E-63 T 13-10-2018 AP3564_00715 64fdbe57f5779cf4583da2f6bb28dc46 506 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 2 16 9.5E-7 T 13-10-2018 AP3564_00715 64fdbe57f5779cf4583da2f6bb28dc46 506 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 43 57 9.5E-7 T 13-10-2018 AP3564_00715 64fdbe57f5779cf4583da2f6bb28dc46 506 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 73 89 9.5E-7 T 13-10-2018 AP3564_00715 64fdbe57f5779cf4583da2f6bb28dc46 506 Pfam PF02540 NAD synthase 201 277 9.5E-7 T 13-10-2018 IPR022310 NAD/GMP synthase AP3564_00715 64fdbe57f5779cf4583da2f6bb28dc46 506 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 1 506 55.816 T 13-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 AP3564_07240 17650ad0886aeb785e81aff5d39cd2e8 68 Gene3D G3DSA:1.50.10.20 6 53 7.8E-10 T 13-10-2018 AP3564_07240 17650ad0886aeb785e81aff5d39cd2e8 68 SUPERFAMILY SSF48239 16 57 4.24E-5 T 13-10-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid AP3564_11820 521a053e8c7a0a84d963fafcd8909de2 291 Pfam PF01545 Cation efflux family 15 206 3.5E-51 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AP3564_11820 521a053e8c7a0a84d963fafcd8909de2 291 Pfam PF16916 Dimerisation domain of Zinc Transporter 212 286 1.4E-21 T 13-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain AP3564_11820 521a053e8c7a0a84d963fafcd8909de2 291 Gene3D G3DSA:3.30.70.1350 208 288 1.7E-19 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 AP3564_11820 521a053e8c7a0a84d963fafcd8909de2 291 SUPERFAMILY SSF160240 210 287 1.19E-21 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 AP3564_11820 521a053e8c7a0a84d963fafcd8909de2 291 Gene3D G3DSA:1.20.1510.10 10 207 7.5E-58 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily AP3564_11820 521a053e8c7a0a84d963fafcd8909de2 291 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 11 287 4.4E-78 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AP3564_11820 521a053e8c7a0a84d963fafcd8909de2 291 SUPERFAMILY SSF161111 7 208 1.44E-56 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily AP3564_03000 ab125d982b6bdc51212feb1e27f9e5ef 450 Pfam PF14398 YheC/D like ATP-grasp 182 436 2.1E-80 T 13-10-2018 IPR026838 Endospore coat-associated protein YheC/D AP3564_03000 ab125d982b6bdc51212feb1e27f9e5ef 450 Gene3D G3DSA:3.30.470.20 306 426 3.9E-5 T 13-10-2018 AP3564_03000 ab125d982b6bdc51212feb1e27f9e5ef 450 SUPERFAMILY SSF56059 206 412 2.65E-12 T 13-10-2018 AP3564_14280 6e83b8d4ae12e98e456d4f9af0665c1c 215 ProSitePatterns PS00211 ABC transporters family signature. 125 139 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_14280 6e83b8d4ae12e98e456d4f9af0665c1c 215 SMART SM00382 22 201 2.0E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_14280 6e83b8d4ae12e98e456d4f9af0665c1c 215 Pfam PF00005 ABC transporter 22 152 3.7E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_14280 6e83b8d4ae12e98e456d4f9af0665c1c 215 Gene3D G3DSA:3.40.50.300 1 215 3.6E-55 T 13-10-2018 AP3564_14280 6e83b8d4ae12e98e456d4f9af0665c1c 215 SUPERFAMILY SSF52540 5 207 2.61E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_07210 2b4bc218380c320f2cf53a0343e513d3 443 Pfam PF01609 Transposase DDE domain 116 363 6.7E-34 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_07210 2b4bc218380c320f2cf53a0343e513d3 443 Gene3D G3DSA:3.90.350.10 260 345 2.7E-5 T 13-10-2018 IPR014736 Transposase, Tn5-like, core AP3564_07210 2b4bc218380c320f2cf53a0343e513d3 443 SUPERFAMILY SSF53098 41 402 2.58E-38 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_06235 1dc1090262b41b1befd4b0e8ad6fef46 450 Gene3D G3DSA:1.20.1740.10 5 450 5.4E-70 T 13-10-2018 AP3564_06235 1dc1090262b41b1befd4b0e8ad6fef46 450 Pfam PF00324 Amino acid permease 13 446 1.0E-118 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 AP3564_06235 1dc1090262b41b1befd4b0e8ad6fef46 450 ProSitePatterns PS00218 Amino acid permeases signature. 38 68 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AP3564_06235 1dc1090262b41b1befd4b0e8ad6fef46 450 PIRSF PIRSF006060 3 449 9.8E-76 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 AP3564_11255 9f4c199a956043cde5376511f093b065 108 Pfam PF01883 Iron-sulfur cluster assembly protein 12 80 9.6E-18 T 13-10-2018 IPR002744 MIP18 family-like AP3564_11255 9f4c199a956043cde5376511f093b065 108 Gene3D G3DSA:3.30.300.130 2 102 1.3E-33 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily AP3564_11255 9f4c199a956043cde5376511f093b065 108 SUPERFAMILY SSF117916 7 101 1.92E-29 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily AP3564_02325 00f214d6698641d85c7dd9018530a889 52 TIGRFAM TIGR03091 SASP_sspK: small, acid-soluble spore protein K 14 45 1.5E-21 T 13-10-2018 IPR012611 Small acid-soluble spore protein, SspK GO:0030436|GO:0042601 AP3564_02325 00f214d6698641d85c7dd9018530a889 52 Pfam PF08176 Small acid-soluble spore protein K family 1 45 5.2E-26 T 13-10-2018 IPR012611 Small acid-soluble spore protein, SspK GO:0030436|GO:0042601 AP3564_02325 00f214d6698641d85c7dd9018530a889 52 Hamap MF_01504 Small, acid-soluble spore protein K [sspK]. 1 47 18.468 T 13-10-2018 IPR012611 Small acid-soluble spore protein, SspK GO:0030436|GO:0042601 AP3564_07825 383213607fe1a007f12f179f57274a5d 115 Pfam PF16526 C-terminal leucine zipper domain of cyclic nucleotide-gated channels 37 83 4.3E-6 T 13-10-2018 IPR032406 Cyclic nucleotide-gated channel, C-terminal leucine zipper domain AP3564_07825 383213607fe1a007f12f179f57274a5d 115 SUPERFAMILY SSF57997 10 114 6.1E-13 T 13-10-2018 AP3564_07825 383213607fe1a007f12f179f57274a5d 115 Gene3D G3DSA:3.90.20.10 51 115 3.6E-5 T 13-10-2018 AP3564_07825 383213607fe1a007f12f179f57274a5d 115 Gene3D G3DSA:3.90.20.10 3 50 2.4E-8 T 13-10-2018 AP3564_05185 e9a3e3a5fd62f53b0419da22c97d39b1 178 Pfam PF15714 Stage V sporulation protein T C-terminal, transcription factor 54 177 4.1E-46 T 13-10-2018 IPR039472 Sporulation stage V protein T, GAF domain AP3564_05185 e9a3e3a5fd62f53b0419da22c97d39b1 178 Gene3D G3DSA:3.30.450.40 56 178 1.2E-45 T 13-10-2018 IPR029016 GAF-like domain superfamily AP3564_05185 e9a3e3a5fd62f53b0419da22c97d39b1 178 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 9 51 1.1E-10 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 AP3564_05185 e9a3e3a5fd62f53b0419da22c97d39b1 178 TIGRFAM TIGR02851 spore_V_T: stage V sporulation protein T 2 177 5.9E-92 T 13-10-2018 IPR014213 Sporulation stage V, protein T AP3564_05185 e9a3e3a5fd62f53b0419da22c97d39b1 178 SMART SM00966 8 52 1.1E-10 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 AP3564_05185 e9a3e3a5fd62f53b0419da22c97d39b1 178 PIRSF PIRSF026579 1 178 4.2E-95 T 13-10-2018 IPR014213 Sporulation stage V, protein T AP3564_05185 e9a3e3a5fd62f53b0419da22c97d39b1 178 TIGRFAM TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family 8 49 1.2E-15 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 AP3564_05185 e9a3e3a5fd62f53b0419da22c97d39b1 178 SUPERFAMILY SSF89447 1 52 9.03E-15 T 13-10-2018 IPR037914 SpoVT-AbrB domain superfamily AP3564_05185 e9a3e3a5fd62f53b0419da22c97d39b1 178 Gene3D G3DSA:2.10.260.10 1 49 3.8E-24 T 13-10-2018 AP3564_05185 e9a3e3a5fd62f53b0419da22c97d39b1 178 SUPERFAMILY SSF55781 100 178 4.64E-6 T 13-10-2018 AP3564_14670 538d89bc476ec108d1762a9a68d8b7fe 230 SMART SM00100 15 133 4.4E-25 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain AP3564_14670 538d89bc476ec108d1762a9a68d8b7fe 230 Gene3D G3DSA:2.60.120.10 3 148 1.1E-36 T 13-10-2018 IPR014710 RmlC-like jelly roll fold AP3564_14670 538d89bc476ec108d1762a9a68d8b7fe 230 Pfam PF13545 Crp-like helix-turn-helix domain 157 226 1.8E-15 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AP3564_14670 538d89bc476ec108d1762a9a68d8b7fe 230 Gene3D G3DSA:1.10.10.10 149 229 7.2E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_14670 538d89bc476ec108d1762a9a68d8b7fe 230 ProSitePatterns PS00042 Crp-type HTH domain signature. 180 203 - T 13-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 AP3564_14670 538d89bc476ec108d1762a9a68d8b7fe 230 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 194 209 3.5E-7 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AP3564_14670 538d89bc476ec108d1762a9a68d8b7fe 230 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 178 194 3.5E-7 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AP3564_14670 538d89bc476ec108d1762a9a68d8b7fe 230 SUPERFAMILY SSF46785 152 228 1.37E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_14670 538d89bc476ec108d1762a9a68d8b7fe 230 SMART SM00419 172 220 2.1E-9 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AP3564_14670 538d89bc476ec108d1762a9a68d8b7fe 230 Pfam PF00027 Cyclic nucleotide-binding domain 34 119 3.9E-20 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain AP3564_14670 538d89bc476ec108d1762a9a68d8b7fe 230 SUPERFAMILY SSF51206 9 145 4.58E-37 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like AP3564_10700 d2df22e3649652b7c0b420b8053a8375 67 PRINTS PR00946 Mercury scavenger protein signature 26 41 2.4E-8 T 13-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 AP3564_10700 d2df22e3649652b7c0b420b8053a8375 67 PRINTS PR00946 Mercury scavenger protein signature 55 67 2.4E-8 T 13-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 AP3564_10700 d2df22e3649652b7c0b420b8053a8375 67 PRINTS PR00946 Mercury scavenger protein signature 10 26 2.4E-8 T 13-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 AP3564_10700 d2df22e3649652b7c0b420b8053a8375 67 PRINTS PR00946 Mercury scavenger protein signature 41 55 2.4E-8 T 13-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 AP3564_10700 d2df22e3649652b7c0b420b8053a8375 67 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 3 66 4.8E-22 T 13-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 AP3564_10700 d2df22e3649652b7c0b420b8053a8375 67 SUPERFAMILY SSF55008 1 66 3.53E-22 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 AP3564_10700 d2df22e3649652b7c0b420b8053a8375 67 ProSitePatterns PS01047 Heavy-metal-associated domain. 7 36 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AP3564_10700 d2df22e3649652b7c0b420b8053a8375 67 Gene3D G3DSA:3.30.70.100 1 67 4.4E-25 T 13-10-2018 AP3564_10700 d2df22e3649652b7c0b420b8053a8375 67 Pfam PF00403 Heavy-metal-associated domain 4 64 9.3E-20 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AP3564_05935 095005a75581d0bf604e797562fce555 237 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 43 226 6.1E-50 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 AP3564_05935 095005a75581d0bf604e797562fce555 237 TIGRFAM TIGR02883 spore_cwlD: N-acetylmuramoyl-L-alanine amidase CwlD 41 228 1.2E-83 T 13-10-2018 IPR014234 N-acetylmuramoyl-L-alanine amidase CwlD MetaCyc: PWY-7883 AP3564_05935 095005a75581d0bf604e797562fce555 237 SMART SM00646 115 226 5.6E-39 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 AP3564_05935 095005a75581d0bf604e797562fce555 237 SUPERFAMILY SSF53187 41 230 5.65E-53 T 13-10-2018 AP3564_05935 095005a75581d0bf604e797562fce555 237 Gene3D G3DSA:3.40.630.40 39 234 9.4E-57 T 13-10-2018 AP3564_18765 46d749ea9747129cfd92324c7f6d0bad 381 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 8 375 1.2E-173 T 13-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AP3564_18765 46d749ea9747129cfd92324c7f6d0bad 381 Gene3D G3DSA:3.20.20.105 2 375 5.6E-169 T 13-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AP3564_18765 46d749ea9747129cfd92324c7f6d0bad 381 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 8 375 1.4E-184 T 13-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AP3564_18765 46d749ea9747129cfd92324c7f6d0bad 381 Pfam PF01702 Queuine tRNA-ribosyltransferase 135 367 1.3E-90 T 13-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AP3564_18765 46d749ea9747129cfd92324c7f6d0bad 381 SUPERFAMILY SSF51713 6 371 1.7E-159 T 13-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AP3564_18765 46d749ea9747129cfd92324c7f6d0bad 381 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 6 370 57.696 T 13-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AP3564_19280 3eff0637d659032d9a2a7ab559eddbac 419 SUPERFAMILY SSF56672 21 356 2.22E-59 T 13-10-2018 AP3564_19280 3eff0637d659032d9a2a7ab559eddbac 419 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 66 272 2.5E-45 T 13-10-2018 IPR000477 Reverse transcriptase domain AP3564_19280 3eff0637d659032d9a2a7ab559eddbac 419 TIGRFAM TIGR04416 group_II_RT_mat: group II intron reverse transcriptase/maturase 10 353 1.5E-131 T 13-10-2018 IPR030931 Group II intron reverse transcriptase/maturase AP3564_19280 3eff0637d659032d9a2a7ab559eddbac 419 Pfam PF08388 Group II intron, maturase-specific domain 288 359 9.7E-21 T 13-10-2018 IPR013597 Group II intron, maturase-specific AP3564_19280 3eff0637d659032d9a2a7ab559eddbac 419 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 129 147 9.6E-6 T 13-10-2018 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 AP3564_19280 3eff0637d659032d9a2a7ab559eddbac 419 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 61 74 9.6E-6 T 13-10-2018 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 AP3564_19280 3eff0637d659032d9a2a7ab559eddbac 419 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 187 200 9.6E-6 T 13-10-2018 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 AP3564_10665 ec1df8292bc1ee960b71cbdbf1a8af73 324 Gene3D G3DSA:2.130.10.10 70 323 8.1E-16 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 AP3564_10665 ec1df8292bc1ee960b71cbdbf1a8af73 324 Pfam PF15902 Sortilin, neurotensin receptor 3, 127 259 5.0E-10 T 13-10-2018 IPR031778 Sortilin, N-terminal AP3564_10665 ec1df8292bc1ee960b71cbdbf1a8af73 324 SUPERFAMILY SSF110296 60 318 2.22E-27 T 13-10-2018 AP3564_06125 f1654e09d6729b57f6dcdee68829dcec 64 SUPERFAMILY SSF46689 4 53 1.97E-6 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_16045 49f548b71d05c35840204b871d6ed9b0 257 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 28 255 7.8E-90 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 AP3564_16045 49f548b71d05c35840204b871d6ed9b0 257 SUPERFAMILY SSF64005 26 250 1.22E-92 T 13-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 AP3564_16045 49f548b71d05c35840204b871d6ed9b0 257 Pfam PF01255 Putative undecaprenyl diphosphate synthase 35 255 2.1E-86 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 AP3564_16045 49f548b71d05c35840204b871d6ed9b0 257 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 28 256 41.334 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 AP3564_16045 49f548b71d05c35840204b871d6ed9b0 257 Gene3D G3DSA:3.40.1180.10 10 257 2.2E-102 T 13-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 AP3564_16045 49f548b71d05c35840204b871d6ed9b0 257 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 201 218 - T 13-10-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 AP3564_00865 9dba5d9195f66d3c44aa3c5cef5d7fd0 456 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 18 448 1.3E-192 T 13-10-2018 AP3564_00865 9dba5d9195f66d3c44aa3c5cef5d7fd0 456 SUPERFAMILY SSF53335 69 455 5.02E-94 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_00865 9dba5d9195f66d3c44aa3c5cef5d7fd0 456 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 277 455 2.8E-24 T 13-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 AP3564_00865 9dba5d9195f66d3c44aa3c5cef5d7fd0 456 Gene3D G3DSA:3.40.1350.30 132 287 1.4E-129 T 13-10-2018 AP3564_00865 9dba5d9195f66d3c44aa3c5cef5d7fd0 456 SUPERFAMILY SSF50249 2 61 5.14E-16 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_00865 9dba5d9195f66d3c44aa3c5cef5d7fd0 456 Gene3D G3DSA:3.40.50.150 83 449 1.4E-129 T 13-10-2018 AP3564_00865 9dba5d9195f66d3c44aa3c5cef5d7fd0 456 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 386 417 - T 13-10-2018 IPR030390 RNA methyltransferase TrmA, active site AP3564_00865 9dba5d9195f66d3c44aa3c5cef5d7fd0 456 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 438 448 - T 13-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site AP3564_00865 9dba5d9195f66d3c44aa3c5cef5d7fd0 456 Gene3D G3DSA:2.40.50.140 2 81 1.8E-21 T 13-10-2018 AP3564_00865 9dba5d9195f66d3c44aa3c5cef5d7fd0 456 Pfam PF01938 TRAM domain 7 60 3.3E-11 T 13-10-2018 IPR002792 TRAM domain AP3564_00505 09a502e1ef3119948db839335cb4242e 175 SUPERFAMILY SSF55804 21 166 3.66E-39 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 AP3564_00505 09a502e1ef3119948db839335cb4242e 175 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 22 159 2.3E-35 T 13-10-2018 IPR002178 PTS EIIA type-2 domain AP3564_00505 09a502e1ef3119948db839335cb4242e 175 Gene3D G3DSA:3.40.930.10 17 168 1.7E-48 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 AP3564_06720 1bc8ad938640149caa867bb6044f7df4 398 TIGRFAM TIGR02887 spore_ger_x_C: germination protein, Ger(x)C family 3 388 1.1E-101 T 13-10-2018 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 AP3564_06720 1bc8ad938640149caa867bb6044f7df4 398 Gene3D G3DSA:3.30.300.210 236 390 9.4E-42 T 13-10-2018 IPR038501 Spore germination GerAC superfamily AP3564_06720 1bc8ad938640149caa867bb6044f7df4 398 Pfam PF05504 Spore germination B3/ GerAC like, C-terminal 221 386 1.1E-40 T 13-10-2018 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 AP3564_15765 f22ec7d41ddd5839fc609d6ed1bf5a4a 444 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 234 249 - T 13-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 AP3564_15765 f22ec7d41ddd5839fc609d6ed1bf5a4a 444 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 7 441 5.6E-190 T 13-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AP3564_15765 f22ec7d41ddd5839fc609d6ed1bf5a4a 444 Gene3D G3DSA:3.10.20.70 2 107 1.2E-47 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AP3564_15765 f22ec7d41ddd5839fc609d6ed1bf5a4a 444 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 361 373 - T 13-10-2018 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AP3564_15765 f22ec7d41ddd5839fc609d6ed1bf5a4a 444 Gene3D G3DSA:3.30.590.10 108 444 6.1E-149 T 13-10-2018 AP3564_15765 f22ec7d41ddd5839fc609d6ed1bf5a4a 444 Pfam PF00120 Glutamine synthetase, catalytic domain 106 440 7.2E-143 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AP3564_15765 f22ec7d41ddd5839fc609d6ed1bf5a4a 444 SMART SM01230 105 354 1.7E-141 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AP3564_15765 f22ec7d41ddd5839fc609d6ed1bf5a4a 444 SUPERFAMILY SSF55931 105 441 9.81E-131 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 AP3564_15765 f22ec7d41ddd5839fc609d6ed1bf5a4a 444 ProSitePatterns PS00180 Glutamine synthetase signature 1. 52 70 - T 13-10-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 AP3564_15765 f22ec7d41ddd5839fc609d6ed1bf5a4a 444 SUPERFAMILY SSF54368 5 104 4.97E-37 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AP3564_15765 f22ec7d41ddd5839fc609d6ed1bf5a4a 444 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 17 99 8.2E-35 T 13-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 AP3564_08525 76880a74761a0021b534bd0f1b7d1e9f 314 Pfam PF07670 Nucleoside recognition 175 263 1.5E-7 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 AP3564_08525 76880a74761a0021b534bd0f1b7d1e9f 314 Pfam PF07670 Nucleoside recognition 17 98 9.9E-10 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 AP3564_00700 bb0df82689e86298ee11e545f41c7475 317 PIRSF PIRSF002849 1 314 2.6E-137 T 13-10-2018 AP3564_00700 bb0df82689e86298ee11e545f41c7475 317 Gene3D G3DSA:3.40.50.300 21 187 1.3E-44 T 13-10-2018 AP3564_00700 bb0df82689e86298ee11e545f41c7475 317 Gene3D G3DSA:1.10.8.300 201 309 6.7E-38 T 13-10-2018 AP3564_00700 bb0df82689e86298ee11e545f41c7475 317 SUPERFAMILY SSF52540 7 284 2.77E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_00700 bb0df82689e86298ee11e545f41c7475 317 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 40 170 2.0E-64 T 13-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 AP3564_04250 bb8d0d503cd913ced275f12e09a47206 204 Gene3D G3DSA:1.20.120.80 17 203 2.8E-54 T 13-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_04250 bb8d0d503cd913ced275f12e09a47206 204 TIGRFAM TIGR02897 QoxC: cytochrome aa3 quinol oxidase, subunit III 14 203 6.7E-87 T 13-10-2018 IPR014246 Quinol oxidase subunit III GO:0015002|GO:0016021|GO:0042773 AP3564_04250 bb8d0d503cd913ced275f12e09a47206 204 Pfam PF00510 Cytochrome c oxidase subunit III 25 201 1.2E-17 T 13-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_04250 bb8d0d503cd913ced275f12e09a47206 204 SUPERFAMILY SSF81452 14 201 9.81E-57 T 13-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_18295 a35adad545df08cc2628416fb3a0200c 373 SUPERFAMILY SSF102705 7 372 7.59E-136 T 13-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily AP3564_18295 a35adad545df08cc2628416fb3a0200c 373 PIRSF PIRSF037489 3 373 1.9E-162 T 13-10-2018 IPR017221 GTP cyclohydrolase 1 type 2//Nif3, bacteria AP3564_18295 a35adad545df08cc2628416fb3a0200c 373 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 10 351 2.0E-82 T 13-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 AP3564_18295 a35adad545df08cc2628416fb3a0200c 373 Gene3D G3DSA:3.40.1390.30 4 125 1.4E-40 T 13-10-2018 AP3564_18295 a35adad545df08cc2628416fb3a0200c 373 Gene3D G3DSA:3.30.70.120 133 242 5.0E-44 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal AP3564_18295 a35adad545df08cc2628416fb3a0200c 373 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 5 368 3.1E-94 T 13-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 AP3564_02615 0d928da0140ad974a3a1a397aa8b5c98 194 Gene3D G3DSA:3.40.50.880 1 191 4.5E-47 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AP3564_02615 0d928da0140ad974a3a1a397aa8b5c98 194 Pfam PF01965 DJ-1/PfpI family 1 165 2.6E-19 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 AP3564_02615 0d928da0140ad974a3a1a397aa8b5c98 194 SUPERFAMILY SSF52317 1 185 5.18E-36 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AP3564_06345 da639aafb3c38ef62927238838fcc29c 111 Gene3D G3DSA:1.10.3730.20 1 107 8.8E-37 T 13-10-2018 AP3564_06345 da639aafb3c38ef62927238838fcc29c 111 SUPERFAMILY SSF103481 7 106 5.89E-22 T 13-10-2018 AP3564_06345 da639aafb3c38ef62927238838fcc29c 111 Pfam PF00893 Small Multidrug Resistance protein 4 94 1.3E-28 T 13-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 AP3564_12460 cc4cbe9d498bf09c1893500b7ca7f89a 220 Pfam PF13545 Crp-like helix-turn-helix domain 133 205 1.1E-18 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AP3564_12460 cc4cbe9d498bf09c1893500b7ca7f89a 220 Gene3D G3DSA:2.60.120.10 5 127 8.5E-25 T 13-10-2018 IPR014710 RmlC-like jelly roll fold AP3564_12460 cc4cbe9d498bf09c1893500b7ca7f89a 220 SMART SM00419 151 199 5.3E-15 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AP3564_12460 cc4cbe9d498bf09c1893500b7ca7f89a 220 SUPERFAMILY SSF46785 130 216 6.83E-26 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_12460 cc4cbe9d498bf09c1893500b7ca7f89a 220 SUPERFAMILY SSF51206 12 127 1.7E-26 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like AP3564_12460 cc4cbe9d498bf09c1893500b7ca7f89a 220 Gene3D G3DSA:1.10.10.10 128 219 2.2E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_12460 cc4cbe9d498bf09c1893500b7ca7f89a 220 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 157 173 1.4E-7 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AP3564_12460 cc4cbe9d498bf09c1893500b7ca7f89a 220 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 173 188 1.4E-7 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AP3564_12460 cc4cbe9d498bf09c1893500b7ca7f89a 220 ProSitePatterns PS00042 Crp-type HTH domain signature. 159 182 - T 13-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 AP3564_12460 cc4cbe9d498bf09c1893500b7ca7f89a 220 Pfam PF00027 Cyclic nucleotide-binding domain 13 94 2.8E-16 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain AP3564_05240 f83a86e71557077eb3de7a0c56d17ccb 125 Gene3D G3DSA:2.40.50.140 1 85 4.5E-30 T 13-10-2018 AP3564_05240 f83a86e71557077eb3de7a0c56d17ccb 125 Pfam PF00575 S1 RNA binding domain 4 74 4.0E-22 T 13-10-2018 IPR003029 S1 domain GO:0003676 AP3564_05240 f83a86e71557077eb3de7a0c56d17ccb 125 SMART SM00316 4 74 2.4E-27 T 13-10-2018 IPR022967 RNA-binding domain, S1 AP3564_05240 f83a86e71557077eb3de7a0c56d17ccb 125 SUPERFAMILY SSF50249 4 82 2.22E-25 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_10350 66f294db4e38f5672b4bdcf356ecbbd0 335 Gene3D G3DSA:3.40.190.10 51 332 5.0E-104 T 13-10-2018 AP3564_10350 66f294db4e38f5672b4bdcf356ecbbd0 335 Gene3D G3DSA:3.40.190.10 134 270 5.0E-104 T 13-10-2018 AP3564_10350 66f294db4e38f5672b4bdcf356ecbbd0 335 SUPERFAMILY SSF53850 47 334 2.42E-80 T 13-10-2018 AP3564_10350 66f294db4e38f5672b4bdcf356ecbbd0 335 Pfam PF16868 NMT1-like family 51 332 1.1E-91 T 13-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family AP3564_10350 66f294db4e38f5672b4bdcf356ecbbd0 335 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 8 332 1.2E-109 T 13-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family AP3564_17290 4a967f803e9dbd4aea08beef221622ea 215 Pfam PF12945 Flagellar protein YcgR 3 87 2.1E-18 T 13-10-2018 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal AP3564_17290 4a967f803e9dbd4aea08beef221622ea 215 Pfam PF07238 PilZ domain 94 202 2.7E-13 T 13-10-2018 IPR009875 PilZ domain GO:0035438 AP3564_17290 4a967f803e9dbd4aea08beef221622ea 215 SUPERFAMILY SSF141371 92 163 3.14E-7 T 13-10-2018 AP3564_17290 4a967f803e9dbd4aea08beef221622ea 215 Gene3D G3DSA:2.40.10.220 95 205 9.2E-10 T 13-10-2018 AP3564_09080 489ad9da12461bac675ffe127e7d3327 107 PIRSF PIRSF010603 1 106 1.5E-44 T 13-10-2018 IPR009190 Protein of unknown function DUF1462 AP3564_09080 489ad9da12461bac675ffe127e7d3327 107 Gene3D G3DSA:3.40.30.30 1 104 1.8E-40 T 13-10-2018 IPR038218 YuzD-like superfamily AP3564_09080 489ad9da12461bac675ffe127e7d3327 107 Pfam PF07315 Protein of unknown function (DUF1462) 8 100 8.0E-41 T 13-10-2018 IPR009190 Protein of unknown function DUF1462 AP3564_09080 489ad9da12461bac675ffe127e7d3327 107 SUPERFAMILY SSF52833 1 105 2.4E-44 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AP3564_04890 f59e4c2a0022d92f8a3475fbf6791b8f 818 Gene3D G3DSA:3.30.1360.40 237 333 4.5E-224 T 13-10-2018 AP3564_04890 f59e4c2a0022d92f8a3475fbf6791b8f 818 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 6 808 25.292 T 13-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AP3564_04890 f59e4c2a0022d92f8a3475fbf6791b8f 818 Gene3D G3DSA:2.120.10.90 498 808 6.2E-127 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal AP3564_04890 f59e4c2a0022d92f8a3475fbf6791b8f 818 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 9 807 0.0 T 13-10-2018 AP3564_04890 f59e4c2a0022d92f8a3475fbf6791b8f 818 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 33 472 1.1E-165 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AP3564_04890 f59e4c2a0022d92f8a3475fbf6791b8f 818 Gene3D G3DSA:3.90.199.10 33 486 4.5E-224 T 13-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 AP3564_04890 f59e4c2a0022d92f8a3475fbf6791b8f 818 SUPERFAMILY SSF56719 31 488 2.22E-187 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AP3564_04890 f59e4c2a0022d92f8a3475fbf6791b8f 818 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 760 806 1.1E-12 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AP3564_04890 f59e4c2a0022d92f8a3475fbf6791b8f 818 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 613 655 1.8E-8 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AP3564_04890 f59e4c2a0022d92f8a3475fbf6791b8f 818 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 710 756 7.2E-13 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AP3564_04890 f59e4c2a0022d92f8a3475fbf6791b8f 818 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 660 705 5.9E-15 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AP3564_04890 f59e4c2a0022d92f8a3475fbf6791b8f 818 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 506 550 9.9E-13 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AP3564_04890 f59e4c2a0022d92f8a3475fbf6791b8f 818 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 555 604 1.1E-10 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AP3564_04890 f59e4c2a0022d92f8a3475fbf6791b8f 818 SUPERFAMILY SSF101904 500 816 2.35E-115 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal AP3564_04890 f59e4c2a0022d92f8a3475fbf6791b8f 818 SMART SM00434 12 465 0.0 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AP3564_04890 f59e4c2a0022d92f8a3475fbf6791b8f 818 Gene3D G3DSA:1.10.268.10 370 459 4.5E-224 T 13-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AP3564_18895 63dac7544c68253e683ce885420bd9a5 264 SUPERFAMILY SSF51261 116 260 6.02E-15 T 13-10-2018 IPR011055 Duplicated hybrid motif AP3564_18895 63dac7544c68253e683ce885420bd9a5 264 Pfam PF01551 Peptidase family M23 167 257 3.5E-17 T 13-10-2018 IPR016047 Peptidase M23 AP3564_18895 63dac7544c68253e683ce885420bd9a5 264 Gene3D G3DSA:2.70.70.10 133 262 1.3E-19 T 13-10-2018 IPR011055 Duplicated hybrid motif AP3564_04225 a897062ca476385dbc6609841ebbaa50 488 Gene3D G3DSA:3.20.20.70 153 320 2.4E-206 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_04225 a897062ca476385dbc6609841ebbaa50 488 SUPERFAMILY SSF51690 141 480 1.47E-132 T 13-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 AP3564_04225 a897062ca476385dbc6609841ebbaa50 488 Gene3D G3DSA:3.20.140.10 12 472 2.4E-206 T 13-10-2018 AP3564_04225 a897062ca476385dbc6609841ebbaa50 488 TIGRFAM TIGR01513 NAPRTase_put: nicotinate phosphoribosyltransferase 11 466 8.9E-184 T 13-10-2018 IPR006405 Nicotinate phosphoribosyltransferase pncB-type GO:0004516|GO:0019358 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264|Reactome: R-HSA-6798695 AP3564_04225 a897062ca476385dbc6609841ebbaa50 488 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 159 338 4.9E-11 T 13-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 AP3564_04225 a897062ca476385dbc6609841ebbaa50 488 PIRSF PIRSF000484 3 482 6.5E-154 T 13-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 AP3564_04225 a897062ca476385dbc6609841ebbaa50 488 SUPERFAMILY SSF54675 5 140 9.42E-51 T 13-10-2018 AP3564_00240 c26bc1852300e23da29752b926ba5cb6 322 PIRSF PIRSF036540 3 319 2.2E-99 T 13-10-2018 IPR011413 Uncharacterised conserved protein UCP036540 AP3564_00240 c26bc1852300e23da29752b926ba5cb6 322 Pfam PF00586 AIR synthase related protein, N-terminal domain 45 148 2.4E-17 T 13-10-2018 IPR016188 PurM-like, N-terminal domain AP3564_00240 c26bc1852300e23da29752b926ba5cb6 322 SUPERFAMILY SSF56042 176 314 1.12E-22 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AP3564_00240 c26bc1852300e23da29752b926ba5cb6 322 Gene3D G3DSA:3.90.650.10 148 315 1.7E-19 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AP3564_00240 c26bc1852300e23da29752b926ba5cb6 322 SUPERFAMILY SSF55326 15 148 1.3E-25 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AP3564_00240 c26bc1852300e23da29752b926ba5cb6 322 Pfam PF02769 AIR synthase related protein, C-terminal domain 189 298 8.3E-16 T 13-10-2018 IPR010918 PurM-like, C-terminal domain AP3564_00240 c26bc1852300e23da29752b926ba5cb6 322 Gene3D G3DSA:3.30.1330.10 15 147 2.4E-27 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AP3564_08490 a8be2cab6a318273f5af4120e2e1813b 238 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 40 227 1.6E-13 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AP3564_08490 a8be2cab6a318273f5af4120e2e1813b 238 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 22 122 3.3E-20 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AP3564_08490 a8be2cab6a318273f5af4120e2e1813b 238 SUPERFAMILY SSF161098 22 215 2.88E-36 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_08490 a8be2cab6a318273f5af4120e2e1813b 238 Gene3D G3DSA:1.10.3720.10 12 234 1.2E-43 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_06780 daf37b08051641770ce4f4b3f408e874 238 Pfam PF01694 Rhomboid family 53 194 3.1E-36 T 13-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 AP3564_06780 daf37b08051641770ce4f4b3f408e874 238 Gene3D G3DSA:1.20.1540.10 10 204 2.8E-39 T 13-10-2018 IPR035952 Rhomboid-like superfamily AP3564_06780 daf37b08051641770ce4f4b3f408e874 238 SUPERFAMILY SSF144091 12 194 4.84E-39 T 13-10-2018 AP3564_00955 c7b898234d0ab085740e74f020f24487 108 SUPERFAMILY SSF52540 4 81 3.26E-18 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_00955 c7b898234d0ab085740e74f020f24487 108 Pfam PF13614 AAA domain 5 89 1.4E-21 T 13-10-2018 IPR025669 AAA domain AP3564_00955 c7b898234d0ab085740e74f020f24487 108 Gene3D G3DSA:3.40.50.300 5 98 1.3E-25 T 13-10-2018 AP3564_17735 cab1596c62aa17c7876d03544a9477b1 470 SUPERFAMILY SSF48179 176 469 8.75E-136 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AP3564_17735 cab1596c62aa17c7876d03544a9477b1 470 Gene3D G3DSA:1.10.1040.10 180 435 4.5E-114 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AP3564_17735 cab1596c62aa17c7876d03544a9477b1 470 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 5 164 3.5E-55 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 AP3564_17735 cab1596c62aa17c7876d03544a9477b1 470 Gene3D G3DSA:1.20.5.320 436 470 5.1E-22 T 13-10-2018 AP3564_17735 cab1596c62aa17c7876d03544a9477b1 470 TIGRFAM TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 5 468 4.9E-234 T 13-10-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AP3564_17735 cab1596c62aa17c7876d03544a9477b1 470 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 253 265 - T 13-10-2018 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AP3564_17735 cab1596c62aa17c7876d03544a9477b1 470 PIRSF PIRSF000109 1 470 9.3E-247 T 13-10-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AP3564_17735 cab1596c62aa17c7876d03544a9477b1 470 SUPERFAMILY SSF51735 4 176 4.93E-57 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_17735 cab1596c62aa17c7876d03544a9477b1 470 Gene3D G3DSA:3.40.50.720 1 179 2.7E-61 T 13-10-2018 AP3564_17735 cab1596c62aa17c7876d03544a9477b1 470 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 119 144 9.4E-89 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AP3564_17735 cab1596c62aa17c7876d03544a9477b1 470 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 167 195 9.4E-89 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AP3564_17735 cab1596c62aa17c7876d03544a9477b1 470 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 4 27 9.4E-89 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AP3564_17735 cab1596c62aa17c7876d03544a9477b1 470 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 357 379 9.4E-89 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AP3564_17735 cab1596c62aa17c7876d03544a9477b1 470 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 249 276 9.4E-89 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AP3564_17735 cab1596c62aa17c7876d03544a9477b1 470 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 66 95 9.4E-89 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AP3564_17735 cab1596c62aa17c7876d03544a9477b1 470 SMART SM01350 178 468 8.7E-235 T 13-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AP3564_17735 cab1596c62aa17c7876d03544a9477b1 470 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 178 467 1.3E-137 T 13-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AP3564_06270 4947ba87f6ad102eb3eb4fe70ec628d1 455 SUPERFAMILY SSF46548 32 115 6.28E-19 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AP3564_06270 4947ba87f6ad102eb3eb4fe70ec628d1 455 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 36 47 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AP3564_06270 4947ba87f6ad102eb3eb4fe70ec628d1 455 Pfam PF02754 Cysteine-rich domain 335 418 3.4E-14 T 13-10-2018 IPR004017 Cysteine-rich domain AP3564_06270 4947ba87f6ad102eb3eb4fe70ec628d1 455 Pfam PF02754 Cysteine-rich domain 208 289 4.0E-15 T 13-10-2018 IPR004017 Cysteine-rich domain AP3564_06270 4947ba87f6ad102eb3eb4fe70ec628d1 455 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 87 98 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AP3564_06270 4947ba87f6ad102eb3eb4fe70ec628d1 455 Gene3D G3DSA:1.10.1060.10 16 120 2.7E-10 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AP3564_06270 4947ba87f6ad102eb3eb4fe70ec628d1 455 PIRSF PIRSF000139 17 448 6.6E-156 T 13-10-2018 AP3564_06270 4947ba87f6ad102eb3eb4fe70ec628d1 455 Pfam PF13183 4Fe-4S dicluster domain 35 101 2.2E-11 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AP3564_12995 d1e58c8ac6d60dae0e9c5494272f462e 299 SUPERFAMILY SSF103481 207 286 3.14E-7 T 13-10-2018 AP3564_12995 d1e58c8ac6d60dae0e9c5494272f462e 299 SUPERFAMILY SSF103481 37 144 1.7E-11 T 13-10-2018 AP3564_12995 d1e58c8ac6d60dae0e9c5494272f462e 299 TIGRFAM TIGR00688 rarD: protein RarD 3 260 3.7E-78 T 13-10-2018 IPR004626 RarD protein GO:0005887 AP3564_12995 d1e58c8ac6d60dae0e9c5494272f462e 299 Pfam PF00892 EamA-like transporter family 3 142 9.4E-13 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AP3564_19260 b0c8cb3ad47c201991b0bd938c929386 66 Gene3D G3DSA:2.40.50.530 1 63 3.5E-20 T 13-10-2018 AP3564_19260 b0c8cb3ad47c201991b0bd938c929386 66 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 63 5.2E-26 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AP3564_19260 b0c8cb3ad47c201991b0bd938c929386 66 SUPERFAMILY SSF143034 2 62 9.42E-22 T 13-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_19260 b0c8cb3ad47c201991b0bd938c929386 66 Pfam PF01632 Ribosomal protein L35 2 62 9.4E-25 T 13-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_19260 b0c8cb3ad47c201991b0bd938c929386 66 PRINTS PR00064 Ribosomal protein L35 signature 36 54 3.1E-21 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AP3564_19260 b0c8cb3ad47c201991b0bd938c929386 66 PRINTS PR00064 Ribosomal protein L35 signature 3 20 3.1E-21 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AP3564_19260 b0c8cb3ad47c201991b0bd938c929386 66 PRINTS PR00064 Ribosomal protein L35 signature 21 35 3.1E-21 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AP3564_19260 b0c8cb3ad47c201991b0bd938c929386 66 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 13-10-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_19260 b0c8cb3ad47c201991b0bd938c929386 66 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 18.445 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AP3564_07495 2001858fe0b5b686b9599c75e67bddc9 443 Gene3D G3DSA:4.10.320.10 116 162 7.0E-17 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AP3564_07495 2001858fe0b5b686b9599c75e67bddc9 443 Gene3D G3DSA:4.10.320.10 163 204 9.0E-14 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AP3564_07495 2001858fe0b5b686b9599c75e67bddc9 443 Gene3D G3DSA:3.30.559.10 205 441 2.3E-94 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 AP3564_07495 2001858fe0b5b686b9599c75e67bddc9 443 Pfam PF00364 Biotin-requiring enzyme 4 76 6.5E-11 T 13-10-2018 IPR000089 Biotin/lipoyl attachment AP3564_07495 2001858fe0b5b686b9599c75e67bddc9 443 Pfam PF02817 e3 binding domain 167 201 4.2E-12 T 13-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 AP3564_07495 2001858fe0b5b686b9599c75e67bddc9 443 Pfam PF02817 e3 binding domain 122 156 2.8E-13 T 13-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 AP3564_07495 2001858fe0b5b686b9599c75e67bddc9 443 SUPERFAMILY SSF52777 216 443 8.45E-87 T 13-10-2018 AP3564_07495 2001858fe0b5b686b9599c75e67bddc9 443 SUPERFAMILY SSF47005 116 161 1.1E-11 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AP3564_07495 2001858fe0b5b686b9599c75e67bddc9 443 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 214 442 1.0E-87 T 13-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 AP3564_07495 2001858fe0b5b686b9599c75e67bddc9 443 Gene3D G3DSA:2.40.50.100 1 103 3.3E-24 T 13-10-2018 AP3564_07495 2001858fe0b5b686b9599c75e67bddc9 443 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 13-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AP3564_07495 2001858fe0b5b686b9599c75e67bddc9 443 SUPERFAMILY SSF51230 1 95 1.44E-22 T 13-10-2018 IPR011053 Single hybrid motif AP3564_07495 2001858fe0b5b686b9599c75e67bddc9 443 SUPERFAMILY SSF47005 164 206 1.57E-9 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AP3564_12735 23ca86d1a32dd28703eb06d6e8939cba 165 Gene3D G3DSA:3.90.420.10 71 145 2.1E-5 T 13-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 AP3564_12735 23ca86d1a32dd28703eb06d6e8939cba 165 SUPERFAMILY SSF56524 87 138 5.36E-7 T 13-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 AP3564_12735 23ca86d1a32dd28703eb06d6e8939cba 165 Pfam PF00174 Oxidoreductase molybdopterin binding domain 86 139 1.0E-4 T 13-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 AP3564_12735 23ca86d1a32dd28703eb06d6e8939cba 165 ProDom PD094668 YLAL SIMILAR MW0994 BH2628 SE0810 SA0960 4 164 3.0E-51 T 13-10-2018 IPR020229 Uncharacterised protein YlaL AP3564_12520 78b9cfabcb838be7ac41c7b69543a3dc 382 Gene3D G3DSA:1.10.540.10 3 117 1.9E-26 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AP3564_12520 78b9cfabcb838be7ac41c7b69543a3dc 382 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 215 8.9E-16 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AP3564_12520 78b9cfabcb838be7ac41c7b69543a3dc 382 SUPERFAMILY SSF56645 5 223 7.46E-44 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AP3564_12520 78b9cfabcb838be7ac41c7b69543a3dc 382 PIRSF PIRSF016578 128 365 3.1E-20 T 13-10-2018 AP3564_12520 78b9cfabcb838be7ac41c7b69543a3dc 382 PIRSF PIRSF016578 1 97 1.8E-13 T 13-10-2018 AP3564_12520 78b9cfabcb838be7ac41c7b69543a3dc 382 SUPERFAMILY SSF47203 238 380 1.03E-29 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AP3564_12520 78b9cfabcb838be7ac41c7b69543a3dc 382 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 93 4.5E-14 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AP3564_12520 78b9cfabcb838be7ac41c7b69543a3dc 382 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 244 360 2.1E-17 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AP3564_12520 78b9cfabcb838be7ac41c7b69543a3dc 382 Gene3D G3DSA:2.40.110.10 121 225 1.9E-22 T 13-10-2018 AP3564_12520 78b9cfabcb838be7ac41c7b69543a3dc 382 Gene3D G3DSA:1.20.140.10 239 380 2.1E-34 T 13-10-2018 AP3564_08630 19a9d70238bcb775b34dc0bbe2496a54 214 Gene3D G3DSA:2.40.50.40 106 176 3.3E-31 T 13-10-2018 AP3564_08630 19a9d70238bcb775b34dc0bbe2496a54 214 SMART SM00850 116 213 2.1E-31 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 AP3564_08630 19a9d70238bcb775b34dc0bbe2496a54 214 Pfam PF04397 LytTr DNA-binding domain 118 212 1.8E-28 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 AP3564_08630 19a9d70238bcb775b34dc0bbe2496a54 214 Gene3D G3DSA:2.20.25.10 177 214 5.6E-23 T 13-10-2018 AP3564_19185 8150e620c9d4c377b2762c5ee5f73591 786 SMART SM00463 708 786 1.1E-24 T 13-10-2018 IPR002625 Smr domain AP3564_19185 8150e620c9d4c377b2762c5ee5f73591 786 Pfam PF01713 Smr domain 711 786 1.1E-19 T 13-10-2018 IPR002625 Smr domain AP3564_19185 8150e620c9d4c377b2762c5ee5f73591 786 SMART SM00534 329 514 3.4E-80 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 AP3564_19185 8150e620c9d4c377b2762c5ee5f73591 786 Pfam PF00488 MutS domain V 332 513 6.2E-34 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 AP3564_19185 8150e620c9d4c377b2762c5ee5f73591 786 SUPERFAMILY SSF160443 709 785 5.89E-10 T 13-10-2018 IPR036063 Smr domain superfamily AP3564_19185 8150e620c9d4c377b2762c5ee5f73591 786 SMART SM00533 9 316 1.0E-35 T 13-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 AP3564_19185 8150e620c9d4c377b2762c5ee5f73591 786 Gene3D G3DSA:3.40.50.300 293 599 3.9E-84 T 13-10-2018 AP3564_19185 8150e620c9d4c377b2762c5ee5f73591 786 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 411 427 - T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 AP3564_19185 8150e620c9d4c377b2762c5ee5f73591 786 SUPERFAMILY SSF52540 293 515 1.09E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_19185 8150e620c9d4c377b2762c5ee5f73591 786 SUPERFAMILY SSF48334 32 288 8.11E-28 T 13-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily AP3564_19185 8150e620c9d4c377b2762c5ee5f73591 786 Hamap MF_00092 Endonuclease MutS2 [mutS2]. 2 785 22.365 T 13-10-2018 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 AP3564_19185 8150e620c9d4c377b2762c5ee5f73591 786 PIRSF PIRSF005814 1 786 5.7E-273 T 13-10-2018 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 AP3564_19185 8150e620c9d4c377b2762c5ee5f73591 786 TIGRFAM TIGR01069 mutS2: MutS2 family protein 2 785 4.0E-271 T 13-10-2018 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 AP3564_19185 8150e620c9d4c377b2762c5ee5f73591 786 Gene3D G3DSA:3.30.1370.110 700 786 3.1E-23 T 13-10-2018 AP3564_04090 dc5edd5e009f619fc43f6ae62a04188f 259 Pfam PF17284 Spermidine synthase tetramerisation domain 1 38 2.9E-14 T 13-10-2018 IPR035246 Spermidine synthase, tetramerisation domain KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 AP3564_04090 dc5edd5e009f619fc43f6ae62a04188f 259 TIGRFAM TIGR00417 speE: spermidine synthase 1 253 7.0E-114 T 13-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 AP3564_04090 dc5edd5e009f619fc43f6ae62a04188f 259 ProSitePatterns PS01330 Polyamine biosynthesis (PABS) domain signature. 63 76 - T 13-10-2018 IPR030373 Polyamine biosynthesis domain, conserved site KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 AP3564_04090 dc5edd5e009f619fc43f6ae62a04188f 259 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 1 259 37.996 T 13-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 AP3564_04090 dc5edd5e009f619fc43f6ae62a04188f 259 Gene3D G3DSA:2.30.140.10 1 36 2.3E-16 T 13-10-2018 IPR037163 Spermidine synthase, tetramerisation domain superfamily KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 AP3564_04090 dc5edd5e009f619fc43f6ae62a04188f 259 SUPERFAMILY SSF53335 2 258 4.7E-85 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_04090 dc5edd5e009f619fc43f6ae62a04188f 259 Gene3D G3DSA:3.40.50.150 37 258 7.6E-77 T 13-10-2018 AP3564_04090 dc5edd5e009f619fc43f6ae62a04188f 259 Pfam PF01564 Spermine/spermidine synthase domain 42 220 1.6E-67 T 13-10-2018 AP3564_05075 3d2d8a04ec30ba71529911572e5d5fa7 121 PIRSF PIRSF021439 1 121 2.9E-41 T 13-10-2018 IPR010377 Initiation control protein YabA GO:0006260 AP3564_05075 3d2d8a04ec30ba71529911572e5d5fa7 121 Pfam PF06156 Initiation control protein YabA 2 116 4.5E-37 T 13-10-2018 IPR010377 Initiation control protein YabA GO:0006260 AP3564_05075 3d2d8a04ec30ba71529911572e5d5fa7 121 Hamap MF_01159 Initiation-control protein YabA. 1 120 24.803 T 13-10-2018 IPR010377 Initiation control protein YabA GO:0006260 AP3564_15775 b2d54f95641d7d2632174f8899925127 422 Pfam PF06838 Methionine gamma-lyase 13 414 3.3E-207 T 13-10-2018 IPR009651 Putative methionine gamma-lyase AP3564_15775 b2d54f95641d7d2632174f8899925127 422 SUPERFAMILY SSF53383 60 398 2.21E-45 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_15775 b2d54f95641d7d2632174f8899925127 422 Gene3D G3DSA:3.40.640.10 58 271 1.6E-186 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_15775 b2d54f95641d7d2632174f8899925127 422 Gene3D G3DSA:3.90.1150.60 17 411 1.6E-186 T 13-10-2018 AP3564_11520 dd66462d82e9d88b30e90fa99e51694b 451 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 3 448 8.2E-84 T 13-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AP3564_11520 dd66462d82e9d88b30e90fa99e51694b 451 ProSitePatterns PS00324 Aspartokinase signature. 3 11 - T 13-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AP3564_11520 dd66462d82e9d88b30e90fa99e51694b 451 SUPERFAMILY SSF55021 372 448 9.51E-21 T 13-10-2018 AP3564_11520 dd66462d82e9d88b30e90fa99e51694b 451 PIRSF PIRSF000726 1 451 4.9E-79 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AP3564_11520 dd66462d82e9d88b30e90fa99e51694b 451 Pfam PF13840 ACT domain 382 444 3.3E-7 T 13-10-2018 IPR027795 CASTOR, ACT domain AP3564_11520 dd66462d82e9d88b30e90fa99e51694b 451 Gene3D G3DSA:3.40.1160.10 3 287 1.6E-78 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AP3564_11520 dd66462d82e9d88b30e90fa99e51694b 451 Gene3D G3DSA:3.30.2130.10 289 451 1.7E-56 T 13-10-2018 AP3564_11520 dd66462d82e9d88b30e90fa99e51694b 451 Pfam PF00696 Amino acid kinase family 2 276 1.4E-40 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 AP3564_11520 dd66462d82e9d88b30e90fa99e51694b 451 Gene3D G3DSA:1.20.120.1320 39 135 1.6E-78 T 13-10-2018 AP3564_11520 dd66462d82e9d88b30e90fa99e51694b 451 SUPERFAMILY SSF53633 1 290 8.77E-69 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AP3564_11520 dd66462d82e9d88b30e90fa99e51694b 451 SUPERFAMILY SSF55021 296 359 4.07E-8 T 13-10-2018 AP3564_05740 e5c29668fa9c3e11ac8f2e3e703193c3 276 SUPERFAMILY SSF50249 2 125 1.03E-51 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_05740 e5c29668fa9c3e11ac8f2e3e703193c3 276 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 275 50.287 T 13-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 AP3564_05740 e5c29668fa9c3e11ac8f2e3e703193c3 276 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 13-10-2018 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05740 e5c29668fa9c3e11ac8f2e3e703193c3 276 SMART SM01383 42 118 6.9E-47 T 13-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05740 e5c29668fa9c3e11ac8f2e3e703193c3 276 Gene3D G3DSA:2.30.30.30 118 196 5.3E-36 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 AP3564_05740 e5c29668fa9c3e11ac8f2e3e703193c3 276 SMART SM01382 124 253 4.7E-95 T 13-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 AP3564_05740 e5c29668fa9c3e11ac8f2e3e703193c3 276 Gene3D G3DSA:4.10.950.10 197 276 8.2E-37 T 13-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05740 e5c29668fa9c3e11ac8f2e3e703193c3 276 PIRSF PIRSF002158 3 276 9.4E-101 T 13-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05740 e5c29668fa9c3e11ac8f2e3e703193c3 276 Gene3D G3DSA:2.40.50.140 1 114 5.8E-49 T 13-10-2018 AP3564_05740 e5c29668fa9c3e11ac8f2e3e703193c3 276 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 276 1.5E-141 T 13-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 AP3564_05740 e5c29668fa9c3e11ac8f2e3e703193c3 276 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 118 4.7E-34 T 13-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05740 e5c29668fa9c3e11ac8f2e3e703193c3 276 SUPERFAMILY SSF50104 126 273 3.01E-62 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily AP3564_05740 e5c29668fa9c3e11ac8f2e3e703193c3 276 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 125 251 3.1E-58 T 13-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 AP3564_00815 ed179cf5214c7025b1dd45b725b3cfd9 232 SUPERFAMILY SSF52540 1 228 3.7E-69 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_00815 ed179cf5214c7025b1dd45b725b3cfd9 232 Gene3D G3DSA:3.40.50.300 12 228 1.6E-84 T 13-10-2018 AP3564_00815 ed179cf5214c7025b1dd45b725b3cfd9 232 Gene3D G3DSA:1.10.10.160 116 190 1.6E-84 T 13-10-2018 IPR013986 DExx box DNA helicase domain superfamily AP3564_00815 ed179cf5214c7025b1dd45b725b3cfd9 232 Pfam PF00580 UvrD/REP helicase N-terminal domain 12 228 3.6E-60 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 AP3564_06485 510a34a26b8b97e4e3875f7106aaac36 405 Pfam PF13439 Glycosyltransferase Family 4 50 170 3.0E-9 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AP3564_06485 510a34a26b8b97e4e3875f7106aaac36 405 Pfam PF00534 Glycosyl transferases group 1 179 357 5.8E-15 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 AP3564_06485 510a34a26b8b97e4e3875f7106aaac36 405 SUPERFAMILY SSF53756 3 378 4.34E-45 T 13-10-2018 AP3564_06485 510a34a26b8b97e4e3875f7106aaac36 405 Gene3D G3DSA:3.40.50.2000 2 174 1.4E-8 T 13-10-2018 AP3564_06485 510a34a26b8b97e4e3875f7106aaac36 405 Gene3D G3DSA:3.40.50.2000 175 364 3.3E-28 T 13-10-2018 AP3564_16400 63083debf989e2b4fa998f8ae1fea3bb 62 Gene3D G3DSA:2.30.170.40 19 62 5.8E-18 T 13-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_16400 63083debf989e2b4fa998f8ae1fea3bb 62 Pfam PF00830 Ribosomal L28 family 3 58 9.3E-21 T 13-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_16400 63083debf989e2b4fa998f8ae1fea3bb 62 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 62 20.142 T 13-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_16400 63083debf989e2b4fa998f8ae1fea3bb 62 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 56 6.7E-23 T 13-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_16400 63083debf989e2b4fa998f8ae1fea3bb 62 SUPERFAMILY SSF143800 1 61 6.87E-24 T 13-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_13425 122943e94fc811b97d998a97164824a4 482 TIGRFAM TIGR02330 prpD: 2-methylcitrate dehydratase 15 482 1.2E-264 T 13-10-2018 IPR012705 2-methylcitrate dehydratase PrpD GO:0019629|GO:0047547|GO:0051537 KEGG: 00640+4.2.1.79 AP3564_13425 122943e94fc811b97d998a97164824a4 482 Gene3D G3DSA:3.30.1330.120 287 425 3.4E-194 T 13-10-2018 AP3564_13425 122943e94fc811b97d998a97164824a4 482 SUPERFAMILY SSF103378 14 481 2.35E-156 T 13-10-2018 IPR036148 MmgE/PrpD superfamily GO:0016829 AP3564_13425 122943e94fc811b97d998a97164824a4 482 Gene3D G3DSA:1.10.4100.10 24 460 3.4E-194 T 13-10-2018 AP3564_13425 122943e94fc811b97d998a97164824a4 482 Pfam PF03972 MmgE/PrpD family 19 465 2.7E-153 T 13-10-2018 IPR005656 MmgE/PrpD GO:0016829 AP3564_13670 73fe3f939ac6837bceb7a174db8bcfe5 132 ProDom PD081567 YHCU 1 112 8.0E-38 T 13-10-2018 IPR020355 Uncharacterised protein family YhcU AP3564_13670 73fe3f939ac6837bceb7a174db8bcfe5 132 Pfam PF17326 Family of unknown function (DUF5365) 1 116 6.8E-47 T 13-10-2018 IPR020355 Uncharacterised protein family YhcU AP3564_06365 cdc58d46538af9389d7575485ff827de 204 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 5 198 1.0E-62 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AP3564_06365 cdc58d46538af9389d7575485ff827de 204 PIRSF PIRSF000709 2 190 2.2E-14 T 13-10-2018 AP3564_06365 cdc58d46538af9389d7575485ff827de 204 SMART SM00855 3 159 1.8E-18 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AP3564_06365 cdc58d46538af9389d7575485ff827de 204 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 6 15 - T 13-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 AP3564_06365 cdc58d46538af9389d7575485ff827de 204 SUPERFAMILY SSF53254 2 203 1.63E-58 T 13-10-2018 IPR029033 Histidine phosphatase superfamily AP3564_06365 cdc58d46538af9389d7575485ff827de 204 Gene3D G3DSA:3.40.50.1240 1 204 4.6E-65 T 13-10-2018 IPR029033 Histidine phosphatase superfamily AP3564_03945 0a7ee5a34550208d67a2a2534f047172 413 Pfam PF00464 Serine hydroxymethyltransferase 4 380 1.5E-183 T 13-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 AP3564_03945 0a7ee5a34550208d67a2a2534f047172 413 Gene3D G3DSA:3.90.1150.10 6 388 2.1E-192 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_03945 0a7ee5a34550208d67a2a2534f047172 413 PIRSF PIRSF000412 1 412 1.0E-178 T 13-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 AP3564_03945 0a7ee5a34550208d67a2a2534f047172 413 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 3 411 54.419 T 13-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 AP3564_03945 0a7ee5a34550208d67a2a2534f047172 413 Gene3D G3DSA:3.40.640.10 33 283 2.1E-192 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_03945 0a7ee5a34550208d67a2a2534f047172 413 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 218 234 - T 13-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 AP3564_03945 0a7ee5a34550208d67a2a2534f047172 413 SUPERFAMILY SSF53383 2 411 1.48E-186 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_02875 a5dce77bcf5b72ec4ed56378e2beeafd 471 Pfam PF04293 SpoVR like protein 5 410 8.4E-166 T 13-10-2018 IPR007390 Sporulation stage V, protein R AP3564_14590 6c3aaf7f9d985a3a26fc322b85ccbbb0 161 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 4 154 5.1E-66 T 13-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AP3564_14590 6c3aaf7f9d985a3a26fc322b85ccbbb0 161 SUPERFAMILY SSF55040 11 157 4.45E-58 T 13-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AP3564_14590 6c3aaf7f9d985a3a26fc322b85ccbbb0 161 Pfam PF01967 MoaC family 15 152 2.7E-53 T 13-10-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AP3564_14590 6c3aaf7f9d985a3a26fc322b85ccbbb0 161 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase [moaC]. 2 160 35.887 T 13-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AP3564_14590 6c3aaf7f9d985a3a26fc322b85ccbbb0 161 Gene3D G3DSA:3.30.70.640 1 161 3.3E-69 T 13-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AP3564_16660 9b5ecdbfa260adb386a2bdc4bb7f5748 235 SUPERFAMILY SSF103657 49 101 5.23E-5 T 13-10-2018 IPR027267 AH/BAR domain superfamily AP3564_16660 9b5ecdbfa260adb386a2bdc4bb7f5748 235 Gene3D G3DSA:3.30.70.1880 93 232 2.6E-33 T 13-10-2018 AP3564_16660 9b5ecdbfa260adb386a2bdc4bb7f5748 235 Pfam PF05949 Bacterial protein of unknown function (DUF881) 94 228 1.3E-34 T 13-10-2018 IPR010273 Protein of unknown function DUF881 AP3564_13320 cf03682462bdab53ac06a98d3ec1c745 91 Pfam PF02583 Metal-sensitive transcriptional repressor 10 87 1.5E-32 T 13-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 AP3564_13320 cf03682462bdab53ac06a98d3ec1c745 91 Gene3D G3DSA:1.20.58.1000 1 91 4.3E-39 T 13-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily AP3564_03305 1ece9d6926b97d34b3e6b1f83ae68a1e 2325 Gene3D G3DSA:2.180.10.10 1919 2172 5.8E-33 T 13-10-2018 AP3564_03305 1ece9d6926b97d34b3e6b1f83ae68a1e 2325 Gene3D G3DSA:2.180.10.10 1757 1917 3.0E-6 T 13-10-2018 AP3564_03305 1ece9d6926b97d34b3e6b1f83ae68a1e 2325 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1192 1230 1.0E-4 T 13-10-2018 IPR006530 YD repeat AP3564_03305 1ece9d6926b97d34b3e6b1f83ae68a1e 2325 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1016 1051 6.7E-6 T 13-10-2018 IPR006530 YD repeat AP3564_03305 1ece9d6926b97d34b3e6b1f83ae68a1e 2325 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1058 1082 0.0035 T 13-10-2018 IPR006530 YD repeat AP3564_03305 1ece9d6926b97d34b3e6b1f83ae68a1e 2325 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1906 1946 1.0E-6 T 13-10-2018 IPR006530 YD repeat AP3564_03305 1ece9d6926b97d34b3e6b1f83ae68a1e 2325 Pfam PF00688 TGF-beta propeptide 342 437 6.3E-5 T 13-10-2018 IPR001111 TGF-beta, propeptide AP3564_03305 1ece9d6926b97d34b3e6b1f83ae68a1e 2325 Pfam PF15653 URI fold toxin 2 2229 2317 8.2E-17 T 13-10-2018 IPR028899 Tox-URI2 domain AP3564_03305 1ece9d6926b97d34b3e6b1f83ae68a1e 2325 SUPERFAMILY SSF49785 1273 1430 1.89E-5 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily AP3564_03305 1ece9d6926b97d34b3e6b1f83ae68a1e 2325 Gene3D G3DSA:2.60.40.10 730 866 1.7E-6 T 13-10-2018 IPR013783 Immunoglobulin-like fold AP3564_03305 1ece9d6926b97d34b3e6b1f83ae68a1e 2325 Gene3D G3DSA:3.90.930.1 970 1105 5.4E-8 T 13-10-2018 AP3564_03305 1ece9d6926b97d34b3e6b1f83ae68a1e 2325 SUPERFAMILY SSF49265 700 859 3.82E-5 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 AP3564_03305 1ece9d6926b97d34b3e6b1f83ae68a1e 2325 SMART SM00060 469 584 4.1 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 AP3564_03305 1ece9d6926b97d34b3e6b1f83ae68a1e 2325 SMART SM00060 732 852 15.0 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 AP3564_03305 1ece9d6926b97d34b3e6b1f83ae68a1e 2325 SMART SM00060 600 716 2.2 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 AP3564_03305 1ece9d6926b97d34b3e6b1f83ae68a1e 2325 Pfam PF05593 RHS Repeat 2069 2098 1.0E-5 T 13-10-2018 IPR031325 RHS repeat AP3564_03305 1ece9d6926b97d34b3e6b1f83ae68a1e 2325 Pfam PF05593 RHS Repeat 1906 1941 4.3E-6 T 13-10-2018 IPR031325 RHS repeat AP3564_03305 1ece9d6926b97d34b3e6b1f83ae68a1e 2325 Pfam PF05593 RHS Repeat 1642 1679 6.5E-5 T 13-10-2018 IPR031325 RHS repeat AP3564_03305 1ece9d6926b97d34b3e6b1f83ae68a1e 2325 ProDom PD039135 WALL-ASSOCIATED REPEAT PROTEIN CELL WALL HYDROLASE PRECURSOR SIGNAL TRANSMEMBRANE RETICULOCYTE 1 251 3.0E-102 T 13-10-2018 AP3564_03305 1ece9d6926b97d34b3e6b1f83ae68a1e 2325 Gene3D G3DSA:2.60.120.260 1437 1599 1.0E-12 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily AP3564_03305 1ece9d6926b97d34b3e6b1f83ae68a1e 2325 Gene3D G3DSA:2.60.120.260 1271 1436 1.8E-28 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily AP3564_03305 1ece9d6926b97d34b3e6b1f83ae68a1e 2325 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 2091 2173 4.1E-21 T 13-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 AP3564_16510 f5219e56b7355f8c4a51d5392b7620bf 380 Gene3D G3DSA:3.40.50.620 163 373 6.8E-94 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AP3564_16510 f5219e56b7355f8c4a51d5392b7620bf 380 Hamap MF_00066 Sulfate adenylyltransferase [sat]. 20 375 49.959 T 13-10-2018 IPR020792 Sulphate adenylyltransferase, prokaryotic-type GO:0000103|GO:0004781 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AP3564_16510 f5219e56b7355f8c4a51d5392b7620bf 380 SUPERFAMILY SSF88697 3 154 7.46E-50 T 13-10-2018 IPR015947 PUA-like superfamily AP3564_16510 f5219e56b7355f8c4a51d5392b7620bf 380 Pfam PF01747 ATP-sulfurylase 164 371 4.2E-93 T 13-10-2018 IPR024951 Sulphate adenylyltransferase catalytic domain GO:0004781 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 AP3564_16510 f5219e56b7355f8c4a51d5392b7620bf 380 Pfam PF14306 PUA-like domain 3 153 1.9E-50 T 13-10-2018 IPR025980 ATP-sulfurylase PUA-like domain KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 AP3564_16510 f5219e56b7355f8c4a51d5392b7620bf 380 TIGRFAM TIGR00339 sopT: sulfate adenylyltransferase 5 371 6.1E-137 T 13-10-2018 IPR002650 Sulphate adenylyltransferase GO:0000103|GO:0004781 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 AP3564_16510 f5219e56b7355f8c4a51d5392b7620bf 380 Gene3D G3DSA:3.10.400.10 3 153 6.1E-47 T 13-10-2018 AP3564_16510 f5219e56b7355f8c4a51d5392b7620bf 380 SUPERFAMILY SSF52374 159 371 9.78E-85 T 13-10-2018 AP3564_17960 d7d36be16ccc19b010c89058b856b94c 417 Pfam PF01609 Transposase DDE domain 124 336 1.3E-30 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_17960 d7d36be16ccc19b010c89058b856b94c 417 Pfam PF14294 Domain of unknown function (DUF4372) 11 69 8.7E-6 T 13-10-2018 IPR025399 Domain of unknown function DUF4372 AP3564_17960 d7d36be16ccc19b010c89058b856b94c 417 SUPERFAMILY SSF53098 77 362 7.59E-43 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_18025 549eec48d6d3c93c98964679f4435a61 447 SUPERFAMILY SSF53383 3 444 7.89E-121 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_18025 549eec48d6d3c93c98964679f4435a61 447 Hamap MF_00712 Probable glycine dehydrogenase (decarboxylating) subunit 1 [gcvPA]. 3 446 50.978 T 13-10-2018 IPR023010 Probable glycine dehydrogenase (decarboxylating) subunit 1 GO:0004375|GO:0009116 KEGG: 00260+1.4.4.2 AP3564_18025 549eec48d6d3c93c98964679f4435a61 447 PIRSF PIRSF006815 3 447 4.5E-194 T 13-10-2018 IPR023010 Probable glycine dehydrogenase (decarboxylating) subunit 1 GO:0004375|GO:0009116 KEGG: 00260+1.4.4.2 AP3564_18025 549eec48d6d3c93c98964679f4435a61 447 Gene3D G3DSA:3.40.640.10 84 349 1.3E-168 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_18025 549eec48d6d3c93c98964679f4435a61 447 Pfam PF02347 Glycine cleavage system P-protein 3 441 1.8E-162 T 13-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 AP3564_18025 549eec48d6d3c93c98964679f4435a61 447 Gene3D G3DSA:3.90.1150.10 73 443 1.3E-168 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_02725 4a6d79b3a0250cf01ad13e936761baeb 254 SMART SM00420 6 58 3.1E-18 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AP3564_02725 4a6d79b3a0250cf01ad13e936761baeb 254 SUPERFAMILY SSF100950 76 233 5.51E-33 T 13-10-2018 IPR037171 NagB/RpiA transferase-like AP3564_02725 4a6d79b3a0250cf01ad13e936761baeb 254 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.0E-7 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AP3564_02725 4a6d79b3a0250cf01ad13e936761baeb 254 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.0E-7 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AP3564_02725 4a6d79b3a0250cf01ad13e936761baeb 254 Gene3D G3DSA:1.10.10.10 1 59 1.9E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_02725 4a6d79b3a0250cf01ad13e936761baeb 254 Pfam PF00455 DeoR C terminal sensor domain 77 232 4.5E-51 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain AP3564_02725 4a6d79b3a0250cf01ad13e936761baeb 254 SUPERFAMILY SSF46785 5 58 1.92E-13 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_02725 4a6d79b3a0250cf01ad13e936761baeb 254 SMART SM01134 74 235 2.9E-66 T 13-10-2018 AP3564_02725 4a6d79b3a0250cf01ad13e936761baeb 254 Pfam PF08220 DeoR-like helix-turn-helix domain 6 60 1.3E-16 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AP3564_03990 282a92e23d07811037a93f220aa9cf1d 286 Pfam PF05175 Methyltransferase small domain 113 196 1.5E-15 T 13-10-2018 IPR007848 Methyltransferase small domain GO:0008168 AP3564_03990 282a92e23d07811037a93f220aa9cf1d 286 Gene3D G3DSA:3.40.50.150 85 284 1.2E-61 T 13-10-2018 AP3564_03990 282a92e23d07811037a93f220aa9cf1d 286 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 26 280 5.3E-82 T 13-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 AP3564_03990 282a92e23d07811037a93f220aa9cf1d 286 SUPERFAMILY SSF53335 4 279 3.14E-49 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_03990 282a92e23d07811037a93f220aa9cf1d 286 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 4 284 40.661 T 13-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 AP3564_03990 282a92e23d07811037a93f220aa9cf1d 286 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 4 283 1.1E-80 T 13-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 AP3564_03990 282a92e23d07811037a93f220aa9cf1d 286 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 187 193 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AP3564_03990 282a92e23d07811037a93f220aa9cf1d 286 Gene3D G3DSA:1.10.8.10 3 84 3.9E-17 T 13-10-2018 AP3564_08420 0500a117100a6a8b40e85f2632e4bed1 304 SUPERFAMILY SSF160240 224 293 1.44E-8 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 AP3564_08420 0500a117100a6a8b40e85f2632e4bed1 304 SUPERFAMILY SSF161111 17 217 1.57E-60 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily AP3564_08420 0500a117100a6a8b40e85f2632e4bed1 304 Gene3D G3DSA:1.20.1510.10 19 216 7.3E-48 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily AP3564_08420 0500a117100a6a8b40e85f2632e4bed1 304 Pfam PF01545 Cation efflux family 23 216 7.7E-51 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AP3564_08420 0500a117100a6a8b40e85f2632e4bed1 304 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 19 295 3.1E-94 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AP3564_12485 820bacd6fdaa896432a8bf84a8486689 397 Pfam PF02687 FtsX-like permease family 303 390 3.4E-12 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 AP3564_12485 820bacd6fdaa896432a8bf84a8486689 397 Pfam PF12704 MacB-like periplasmic core domain 21 240 6.5E-37 T 13-10-2018 IPR025857 MacB-like periplasmic core domain AP3564_01285 f1b8459e24ba132a2dc08fde7cb9aa24 328 Pfam PF13426 PAS domain 15 112 9.8E-10 T 13-10-2018 IPR000014 PAS domain AP3564_01285 f1b8459e24ba132a2dc08fde7cb9aa24 328 Gene3D G3DSA:3.30.450.20 8 113 4.9E-21 T 13-10-2018 AP3564_01285 f1b8459e24ba132a2dc08fde7cb9aa24 328 SUPERFAMILY SSF55785 13 111 1.47E-17 T 13-10-2018 IPR035965 PAS domain superfamily AP3564_01285 f1b8459e24ba132a2dc08fde7cb9aa24 328 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 13 114 7.1E-13 T 13-10-2018 IPR000014 PAS domain AP3564_01285 f1b8459e24ba132a2dc08fde7cb9aa24 328 SMART SM00471 145 296 7.7E-6 T 13-10-2018 IPR003607 HD/PDEase domain AP3564_01285 f1b8459e24ba132a2dc08fde7cb9aa24 328 SUPERFAMILY SSF109604 144 324 2.14E-32 T 13-10-2018 AP3564_01285 f1b8459e24ba132a2dc08fde7cb9aa24 328 Gene3D G3DSA:1.10.3210.10 124 328 1.7E-64 T 13-10-2018 AP3564_01285 f1b8459e24ba132a2dc08fde7cb9aa24 328 Pfam PF13487 HD domain 206 277 1.7E-15 T 13-10-2018 AP3564_12305 27ebd15394076590acbe83077694df5a 438 SUPERFAMILY SSF53187 184 425 1.2E-42 T 13-10-2018 AP3564_12305 27ebd15394076590acbe83077694df5a 438 Gene3D G3DSA:3.40.630.10 177 427 4.1E-47 T 13-10-2018 AP3564_12305 27ebd15394076590acbe83077694df5a 438 Pfam PF04389 Peptidase family M28 238 408 7.9E-11 T 13-10-2018 IPR007484 Peptidase M28 AP3564_12305 27ebd15394076590acbe83077694df5a 438 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 240 249 - T 13-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AP3564_15925 e02790c07069944d2d8ae24c6b9a6bd5 289 SMART SM01130 1 289 1.7E-147 T 13-10-2018 IPR002220 DapA-like GO:0016829 AP3564_15925 e02790c07069944d2d8ae24c6b9a6bd5 289 PIRSF PIRSF001365 1 289 2.2E-103 T 13-10-2018 IPR002220 DapA-like GO:0016829 AP3564_15925 e02790c07069944d2d8ae24c6b9a6bd5 289 SUPERFAMILY SSF51569 1 288 1.15E-106 T 13-10-2018 AP3564_15925 e02790c07069944d2d8ae24c6b9a6bd5 289 PRINTS PR00146 Dihydrodipicolinate synthase signature 128 145 2.4E-36 T 13-10-2018 IPR002220 DapA-like GO:0016829 AP3564_15925 e02790c07069944d2d8ae24c6b9a6bd5 289 PRINTS PR00146 Dihydrodipicolinate synthase signature 103 119 2.4E-36 T 13-10-2018 IPR002220 DapA-like GO:0016829 AP3564_15925 e02790c07069944d2d8ae24c6b9a6bd5 289 PRINTS PR00146 Dihydrodipicolinate synthase signature 71 89 2.4E-36 T 13-10-2018 IPR002220 DapA-like GO:0016829 AP3564_15925 e02790c07069944d2d8ae24c6b9a6bd5 289 PRINTS PR00146 Dihydrodipicolinate synthase signature 35 56 2.4E-36 T 13-10-2018 IPR002220 DapA-like GO:0016829 AP3564_15925 e02790c07069944d2d8ae24c6b9a6bd5 289 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 38 55 - T 13-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AP3564_15925 e02790c07069944d2d8ae24c6b9a6bd5 289 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 133 163 - T 13-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 AP3564_15925 e02790c07069944d2d8ae24c6b9a6bd5 289 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 5 287 3.1E-118 T 13-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AP3564_15925 e02790c07069944d2d8ae24c6b9a6bd5 289 Pfam PF00701 Dihydrodipicolinate synthetase family 2 287 4.2E-114 T 13-10-2018 IPR002220 DapA-like GO:0016829 AP3564_15925 e02790c07069944d2d8ae24c6b9a6bd5 289 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 287 66.329 T 13-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AP3564_15925 e02790c07069944d2d8ae24c6b9a6bd5 289 Gene3D G3DSA:3.20.20.70 1 289 8.9E-120 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_19125 b4e543c957722266314ca0159cb5bbff 74 SMART SM00421 9 66 1.1E-24 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_19125 b4e543c957722266314ca0159cb5bbff 74 Gene3D G3DSA:1.10.10.10 1 74 1.4E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_19125 b4e543c957722266314ca0159cb5bbff 74 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 26 42 2.5E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_19125 b4e543c957722266314ca0159cb5bbff 74 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 42 54 2.5E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_19125 b4e543c957722266314ca0159cb5bbff 74 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 12 26 2.5E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_19125 b4e543c957722266314ca0159cb5bbff 74 ProSitePatterns PS00622 LuxR-type HTH domain signature. 26 53 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_19125 b4e543c957722266314ca0159cb5bbff 74 SUPERFAMILY SSF46894 7 71 6.12E-23 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AP3564_19125 b4e543c957722266314ca0159cb5bbff 74 Pfam PF00196 Bacterial regulatory proteins, luxR family 12 64 1.8E-23 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_07855 b608bc24299dd39420edeef2f39e9acb 406 Pfam PF07690 Major Facilitator Superfamily 32 333 6.8E-38 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AP3564_07855 b608bc24299dd39420edeef2f39e9acb 406 SUPERFAMILY SSF103473 25 401 5.49E-61 T 13-10-2018 IPR036259 MFS transporter superfamily AP3564_07855 b608bc24299dd39420edeef2f39e9acb 406 Gene3D G3DSA:1.20.1250.20 22 399 1.0E-53 T 13-10-2018 AP3564_10015 e8195f3740fdc0b838399d0042b76aa1 269 Pfam PF08282 haloacid dehalogenase-like hydrolase 7 263 5.1E-71 T 13-10-2018 AP3564_10015 e8195f3740fdc0b838399d0042b76aa1 269 SUPERFAMILY SSF56784 3 267 2.1E-73 T 13-10-2018 IPR036412 HAD-like superfamily AP3564_10015 e8195f3740fdc0b838399d0042b76aa1 269 Gene3D G3DSA:3.30.1240.10 86 192 7.2E-70 T 13-10-2018 AP3564_10015 e8195f3740fdc0b838399d0042b76aa1 269 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 6 263 2.9E-63 T 13-10-2018 IPR000150 Cof family GO:0016787 AP3564_10015 e8195f3740fdc0b838399d0042b76aa1 269 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 6 236 1.6E-29 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 AP3564_10015 e8195f3740fdc0b838399d0042b76aa1 269 Gene3D G3DSA:3.40.50.1000 7 263 7.2E-70 T 13-10-2018 IPR023214 HAD superfamily AP3564_13605 16312a3d9afc878c2533276b579ebe78 188 Pfam PF07875 Coat F domain 100 162 5.2E-22 T 13-10-2018 IPR012851 Spore coat protein CotF-like AP3564_11215 8102cffcb81e0191e3cd5ab0d339745c 241 SUPERFAMILY SSF51735 28 141 1.55E-15 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_11215 8102cffcb81e0191e3cd5ab0d339745c 241 PIRSF PIRSF000105 3 241 2.2E-38 T 13-10-2018 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 AP3564_11215 8102cffcb81e0191e3cd5ab0d339745c 241 Gene3D G3DSA:3.40.50.720 3 146 3.5E-20 T 13-10-2018 AP3564_11215 8102cffcb81e0191e3cd5ab0d339745c 241 Gene3D G3DSA:1.10.1040.10 151 236 1.5E-31 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AP3564_11215 8102cffcb81e0191e3cd5ab0d339745c 241 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 145 240 4.9E-28 T 13-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AP3564_11215 8102cffcb81e0191e3cd5ab0d339745c 241 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 9 141 2.9E-15 T 13-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AP3564_11215 8102cffcb81e0191e3cd5ab0d339745c 241 SUPERFAMILY SSF48179 144 241 9.35E-30 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AP3564_00750 f4b2a962d539334051faeb61dc989e1e 227 SMART SM01211 1 219 1.2E-137 T 13-10-2018 AP3564_00750 f4b2a962d539334051faeb61dc989e1e 227 TIGRFAM TIGR01737 FGAM_synth_I: phosphoribosylformylglycinamidine synthase I 1 218 2.6E-97 T 13-10-2018 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 AP3564_00750 f4b2a962d539334051faeb61dc989e1e 227 Gene3D G3DSA:3.40.50.880 1 220 5.6E-76 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AP3564_00750 f4b2a962d539334051faeb61dc989e1e 227 Hamap MF_00421 Phosphoribosylformylglycinamidine synthase subunit PurQ [purQ]. 1 217 45.737 T 13-10-2018 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 AP3564_00750 f4b2a962d539334051faeb61dc989e1e 227 SUPERFAMILY SSF52317 2 218 4.73E-78 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AP3564_00750 f4b2a962d539334051faeb61dc989e1e 227 PIRSF PIRSF001586 1 222 3.7E-91 T 13-10-2018 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 AP3564_00750 f4b2a962d539334051faeb61dc989e1e 227 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 2 205 2.7E-45 T 13-10-2018 AP3564_12780 51d6c05a0940072fc0f3bef583655f6d 73 Pfam PF10782 Zinc-finger 4 59 1.2E-27 T 13-10-2018 IPR019718 Protein of unknown function DUF2602 AP3564_11975 7400b86907fe7bd989353baa4804dea4 501 Gene3D G3DSA:1.20.1250.20 275 501 4.9E-21 T 13-10-2018 AP3564_11975 7400b86907fe7bd989353baa4804dea4 501 SUPERFAMILY SSF103473 19 499 1.57E-70 T 13-10-2018 IPR036259 MFS transporter superfamily AP3564_11975 7400b86907fe7bd989353baa4804dea4 501 PRINTS PR01036 Tetracycline resistance protein TetB signature 146 170 5.8E-6 T 13-10-2018 AP3564_11975 7400b86907fe7bd989353baa4804dea4 501 PRINTS PR01036 Tetracycline resistance protein TetB signature 85 107 5.8E-6 T 13-10-2018 AP3564_11975 7400b86907fe7bd989353baa4804dea4 501 PRINTS PR01036 Tetracycline resistance protein TetB signature 409 428 5.8E-6 T 13-10-2018 AP3564_11975 7400b86907fe7bd989353baa4804dea4 501 Gene3D G3DSA:1.20.1720.10 23 230 2.4E-54 T 13-10-2018 AP3564_11975 7400b86907fe7bd989353baa4804dea4 501 Pfam PF07690 Major Facilitator Superfamily 27 419 9.3E-51 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AP3564_11975 7400b86907fe7bd989353baa4804dea4 501 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 23 495 1.4E-72 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 AP3564_06450 ce353fdd302feb317a345726d47c3a6f 411 Pfam PF04055 Radical SAM superfamily 114 265 4.0E-17 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AP3564_06450 ce353fdd302feb317a345726d47c3a6f 411 PIRSF PIRSF037420 97 391 8.1E-41 T 13-10-2018 IPR017200 Coenzyme PQQ synthesis protein E AP3564_06450 ce353fdd302feb317a345726d47c3a6f 411 PIRSF PIRSF037420 27 85 290.0 T 13-10-2018 IPR017200 Coenzyme PQQ synthesis protein E AP3564_06450 ce353fdd302feb317a345726d47c3a6f 411 SUPERFAMILY SSF102114 107 381 6.8E-47 T 13-10-2018 AP3564_06450 ce353fdd302feb317a345726d47c3a6f 411 Gene3D G3DSA:3.20.20.70 108 388 4.1E-47 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_06450 ce353fdd302feb317a345726d47c3a6f 411 Pfam PF13186 Iron-sulfur cluster-binding domain 334 380 1.4E-5 T 13-10-2018 IPR023885 4Fe4S-binding SPASM domain AP3564_06450 ce353fdd302feb317a345726d47c3a6f 411 Pfam PF13353 4Fe-4S single cluster domain 115 218 2.0E-6 T 13-10-2018 AP3564_06450 ce353fdd302feb317a345726d47c3a6f 411 SMART SM00729 108 304 0.0036 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AP3564_06450 ce353fdd302feb317a345726d47c3a6f 411 TIGRFAM TIGR04403 rSAM_skfB: sporulation killing factor system radical SAM maturase 8 403 2.5E-194 T 13-10-2018 IPR030915 Sporulation killing factor system, radical SAM maturase SkfB AP3564_00550 0de3557e9f3f9996e225b05a66e5f126 430 SUPERFAMILY SSF103473 4 416 1.44E-65 T 13-10-2018 IPR036259 MFS transporter superfamily AP3564_00550 0de3557e9f3f9996e225b05a66e5f126 430 ProSitePatterns PS00217 Sugar transport proteins signature 2. 119 144 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AP3564_00550 0de3557e9f3f9996e225b05a66e5f126 430 Pfam PF00083 Sugar (and other) transporter 9 216 6.0E-23 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AP3564_00550 0de3557e9f3f9996e225b05a66e5f126 430 Gene3D G3DSA:1.20.1250.20 4 429 1.2E-62 T 13-10-2018 AP3564_00550 0de3557e9f3f9996e225b05a66e5f126 430 Pfam PF07690 Major Facilitator Superfamily 243 412 1.1E-11 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AP3564_14255 bde6880f14ad52f60219344ec6fb20f4 451 SUPERFAMILY SSF51246 331 444 1.62E-41 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AP3564_14255 bde6880f14ad52f60219344ec6fb20f4 451 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AP3564_14255 bde6880f14ad52f60219344ec6fb20f4 451 SUPERFAMILY SSF52440 1 113 2.01E-49 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AP3564_14255 bde6880f14ad52f60219344ec6fb20f4 451 SMART SM00878 336 441 1.2E-56 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AP3564_14255 bde6880f14ad52f60219344ec6fb20f4 451 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AP3564_14255 bde6880f14ad52f60219344ec6fb20f4 451 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 322 1.4E-79 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AP3564_14255 bde6880f14ad52f60219344ec6fb20f4 451 SUPERFAMILY SSF56059 83 352 1.08E-70 T 13-10-2018 AP3564_14255 bde6880f14ad52f60219344ec6fb20f4 451 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 7.2E-46 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AP3564_14255 bde6880f14ad52f60219344ec6fb20f4 451 Gene3D G3DSA:3.30.470.130 1 447 2.3E-197 T 13-10-2018 AP3564_14255 bde6880f14ad52f60219344ec6fb20f4 451 Pfam PF02785 Biotin carboxylase C-terminal domain 336 441 2.7E-38 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AP3564_05870 206ca92e7a16ae2f628a16c700888732 131 ProSitePatterns PS01167 Ribosomal protein L17 signature. 30 52 - T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05870 206ca92e7a16ae2f628a16c700888732 131 TIGRFAM TIGR00059 L17: ribosomal protein bL17 2 131 1.9E-46 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05870 206ca92e7a16ae2f628a16c700888732 131 Pfam PF01196 Ribosomal protein L17 16 131 2.5E-39 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05870 206ca92e7a16ae2f628a16c700888732 131 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 1 131 28.017 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05870 206ca92e7a16ae2f628a16c700888732 131 Gene3D G3DSA:3.90.1030.10 1 131 3.2E-49 T 13-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05870 206ca92e7a16ae2f628a16c700888732 131 SUPERFAMILY SSF64263 2 131 1.44E-42 T 13-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_01155 4961725ec77f4d9e8e69a68e4ade3d9c 276 Gene3D G3DSA:3.40.190.10 116 234 5.4E-74 T 13-10-2018 AP3564_01155 4961725ec77f4d9e8e69a68e4ade3d9c 276 SMART SM00062 48 272 4.8E-73 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AP3564_01155 4961725ec77f4d9e8e69a68e4ade3d9c 276 SUPERFAMILY SSF53850 1 272 1.71E-76 T 13-10-2018 AP3564_01155 4961725ec77f4d9e8e69a68e4ade3d9c 276 SMART SM00079 48 271 1.4E-4 T 13-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 AP3564_01155 4961725ec77f4d9e8e69a68e4ade3d9c 276 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 49 270 2.0E-70 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AP3564_01155 4961725ec77f4d9e8e69a68e4ade3d9c 276 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 71 84 - T 13-10-2018 IPR018313 Solute-binding protein family 3, conserved site AP3564_01155 4961725ec77f4d9e8e69a68e4ade3d9c 276 Gene3D G3DSA:3.40.190.10 50 269 5.4E-74 T 13-10-2018 AP3564_12295 c7ff5d61a091fec32c1213ca1c2cb4c9 370 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 4 20 1.9E-12 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 AP3564_12295 c7ff5d61a091fec32c1213ca1c2cb4c9 370 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 119 133 1.9E-12 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 AP3564_12295 c7ff5d61a091fec32c1213ca1c2cb4c9 370 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 167 180 1.9E-12 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 AP3564_12295 c7ff5d61a091fec32c1213ca1c2cb4c9 370 TIGRFAM TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase 7 337 8.1E-50 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 AP3564_12295 c7ff5d61a091fec32c1213ca1c2cb4c9 370 Gene3D G3DSA:3.90.120.10 162 328 1.2E-72 T 13-10-2018 AP3564_12295 c7ff5d61a091fec32c1213ca1c2cb4c9 370 SUPERFAMILY SSF53335 3 340 2.79E-78 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_12295 c7ff5d61a091fec32c1213ca1c2cb4c9 370 Gene3D G3DSA:3.40.50.150 7 335 1.2E-72 T 13-10-2018 AP3564_12295 c7ff5d61a091fec32c1213ca1c2cb4c9 370 ProSitePatterns PS00094 C-5 cytosine-specific DNA methylases active site. 80 92 - T 13-10-2018 IPR018117 DNA methylase, C-5 cytosine-specific, active site KEGG: 00270+2.1.1.37|Reactome: R-HSA-212300|Reactome: R-HSA-4655427|Reactome: R-HSA-5334118 AP3564_12295 c7ff5d61a091fec32c1213ca1c2cb4c9 370 Pfam PF00145 C-5 cytosine-specific DNA methylase 3 338 1.8E-75 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 AP3564_10215 f702a1425dd6b077091ebbf2411c2e0d 370 SUPERFAMILY SSF51905 4 362 2.98E-42 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_10215 f702a1425dd6b077091ebbf2411c2e0d 370 Gene3D G3DSA:3.50.50.60 8 345 2.2E-108 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_10215 f702a1425dd6b077091ebbf2411c2e0d 370 Pfam PF01266 FAD dependent oxidoreductase 5 343 4.6E-66 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AP3564_10215 f702a1425dd6b077091ebbf2411c2e0d 370 SUPERFAMILY SSF54373 219 304 6.67E-16 T 13-10-2018 AP3564_10215 f702a1425dd6b077091ebbf2411c2e0d 370 Gene3D G3DSA:3.30.9.10 91 304 2.2E-108 T 13-10-2018 AP3564_10215 f702a1425dd6b077091ebbf2411c2e0d 370 TIGRFAM TIGR02352 thiamin_ThiO: glycine oxidase ThiO 6 348 2.0E-101 T 13-10-2018 IPR012727 Glycine oxidase ThiO GO:0016491|GO:0050660 KEGG: 00730+1.4.3.19|MetaCyc: PWY-7396|MetaCyc: PWY-7806 AP3564_09920 b6ff753ff01eb2561f671ff3d6ff03cc 302 SUPERFAMILY SSF56529 80 299 2.49E-78 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AP3564_09920 b6ff753ff01eb2561f671ff3d6ff03cc 302 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 92 299 2.7E-71 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 AP3564_09920 b6ff753ff01eb2561f671ff3d6ff03cc 302 Gene3D G3DSA:3.90.850.10 86 302 2.7E-87 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AP3564_13315 242830b2efafe602630a097cf1f10ef1 486 Gene3D G3DSA:3.40.309.10 257 437 1.0E-159 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AP3564_13315 242830b2efafe602630a097cf1f10ef1 486 Gene3D G3DSA:3.40.605.10 13 256 1.0E-159 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AP3564_13315 242830b2efafe602630a097cf1f10ef1 486 SUPERFAMILY SSF53720 7 477 2.09E-148 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AP3564_13315 242830b2efafe602630a097cf1f10ef1 486 Pfam PF00171 Aldehyde dehydrogenase family 16 475 5.8E-161 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AP3564_13315 242830b2efafe602630a097cf1f10ef1 486 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 253 260 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AP3564_05775 a9d7893b5e39b721601815ccc71010df 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 2.5E-54 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AP3564_05775 a9d7893b5e39b721601815ccc71010df 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 1.3E-57 T 13-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 AP3564_05775 a9d7893b5e39b721601815ccc71010df 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 25.661 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AP3564_05775 a9d7893b5e39b721601815ccc71010df 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 13-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05775 a9d7893b5e39b721601815ccc71010df 122 SUPERFAMILY SSF50193 1 122 1.7E-50 T 13-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 AP3564_05775 a9d7893b5e39b721601815ccc71010df 122 SMART SM01374 1 122 2.7E-86 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AP3564_05775 a9d7893b5e39b721601815ccc71010df 122 Gene3D G3DSA:2.40.150.20 1 122 2.4E-53 T 13-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 AP3564_05680 91263a76c99c2a6f3664fccfaff333df 200 Gene3D G3DSA:3.40.50.150 6 200 3.7E-47 T 13-10-2018 AP3564_05680 91263a76c99c2a6f3664fccfaff333df 200 SUPERFAMILY SSF53335 7 199 7.02E-38 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_05680 91263a76c99c2a6f3664fccfaff333df 200 Pfam PF05175 Methyltransferase small domain 29 196 2.2E-48 T 13-10-2018 IPR007848 Methyltransferase small domain GO:0008168 AP3564_00600 8c765e89d2dab80ae0405c8440611d86 263 Gene3D G3DSA:3.90.850.10 44 259 1.3E-58 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AP3564_00600 8c765e89d2dab80ae0405c8440611d86 263 TIGRFAM TIGR02305 HpaG-N-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit 46 251 1.2E-81 T 13-10-2018 IPR012686 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit GO:0008704|GO:0018800 KEGG: 00350+5.3.3.10+4.1.1.68 AP3564_00600 8c765e89d2dab80ae0405c8440611d86 263 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 48 252 1.4E-47 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 AP3564_00600 8c765e89d2dab80ae0405c8440611d86 263 SUPERFAMILY SSF56529 46 254 2.62E-56 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AP3564_08760 e9c0a5d82dc7959bb5814801d862bd5e 83 Pfam PF05768 Glutaredoxin-like domain (DUF836) 3 76 3.9E-17 T 13-10-2018 IPR008554 Glutaredoxin-like AP3564_08760 e9c0a5d82dc7959bb5814801d862bd5e 83 Gene3D G3DSA:3.40.30.10 1 76 7.6E-21 T 13-10-2018 AP3564_08760 e9c0a5d82dc7959bb5814801d862bd5e 83 SUPERFAMILY SSF52833 2 76 2.11E-20 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AP3564_14010 55771b12b2aa4d66c03f404dd32734d2 260 Pfam PF01925 Sulfite exporter TauE/SafE 11 254 6.0E-43 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AP3564_05725 b9e8255e3b0b01eceb7407dc0bd03fed 209 Gene3D G3DSA:2.40.30.10 132 209 2.4E-18 T 13-10-2018 AP3564_05725 b9e8255e3b0b01eceb7407dc0bd03fed 209 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 2 206 40.245 T 13-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05725 b9e8255e3b0b01eceb7407dc0bd03fed 209 SUPERFAMILY SSF50447 1 207 6.71E-84 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AP3564_05725 b9e8255e3b0b01eceb7407dc0bd03fed 209 ProSitePatterns PS00474 Ribosomal protein L3 signature. 102 125 - T 13-10-2018 IPR019926 Ribosomal protein L3, conserved site AP3564_05725 b9e8255e3b0b01eceb7407dc0bd03fed 209 Gene3D G3DSA:2.40.50.620 33 95 1.1E-14 T 13-10-2018 AP3564_05725 b9e8255e3b0b01eceb7407dc0bd03fed 209 Pfam PF00297 Ribosomal protein L3 99 181 2.0E-16 T 13-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05725 b9e8255e3b0b01eceb7407dc0bd03fed 209 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 4 203 4.2E-89 T 13-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_12375 5f13c2572578e3fbb2fae95dbf99f907 179 Pfam PF02417 Chromate transporter 6 172 5.3E-37 T 13-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 AP3564_16060 66fabac95ac1ca443906d9a869ee5231 293 ProSitePatterns PS01127 Elongation factor Ts signature 2. 74 84 - T 13-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AP3564_16060 66fabac95ac1ca443906d9a869ee5231 293 Gene3D G3DSA:3.30.479.20 155 273 2.7E-45 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 AP3564_16060 66fabac95ac1ca443906d9a869ee5231 293 SUPERFAMILY SSF46934 1 55 8.17E-22 T 13-10-2018 IPR009060 UBA-like superfamily GO:0005515 AP3564_16060 66fabac95ac1ca443906d9a869ee5231 293 SUPERFAMILY SSF54713 151 292 1.83E-53 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 AP3564_16060 66fabac95ac1ca443906d9a869ee5231 293 ProSitePatterns PS01126 Elongation factor Ts signature 1. 11 26 - T 13-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AP3564_16060 66fabac95ac1ca443906d9a869ee5231 293 Gene3D G3DSA:1.10.8.10 1 55 6.0E-29 T 13-10-2018 AP3564_16060 66fabac95ac1ca443906d9a869ee5231 293 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 293 6.5E-122 T 13-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AP3564_16060 66fabac95ac1ca443906d9a869ee5231 293 Hamap MF_00050 Elongation factor Ts [tsf]. 1 291 84.33 T 13-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AP3564_16060 66fabac95ac1ca443906d9a869ee5231 293 Pfam PF00889 Elongation factor TS 70 274 5.5E-78 T 13-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 AP3564_16060 66fabac95ac1ca443906d9a869ee5231 293 SUPERFAMILY SSF54713 55 145 1.96E-24 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 AP3564_16060 66fabac95ac1ca443906d9a869ee5231 293 Gene3D G3DSA:3.30.479.20 56 147 6.1E-27 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 AP3564_16060 66fabac95ac1ca443906d9a869ee5231 293 Gene3D G3DSA:1.10.286.20 193 239 2.7E-45 T 13-10-2018 AP3564_06570 47ba98eaac3c4428cf780a9c6da85761 261 SUPERFAMILY SSF56529 3 259 2.09E-74 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AP3564_06570 47ba98eaac3c4428cf780a9c6da85761 261 Gene3D G3DSA:3.90.850.10 1 260 4.2E-80 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AP3564_06570 47ba98eaac3c4428cf780a9c6da85761 261 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 87 256 2.7E-9 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 AP3564_03005 108b53f3027d9bcd07c4fac4ffe8d2df 369 Pfam PF14398 YheC/D like ATP-grasp 102 354 6.2E-68 T 13-10-2018 IPR026838 Endospore coat-associated protein YheC/D AP3564_03005 108b53f3027d9bcd07c4fac4ffe8d2df 369 Gene3D G3DSA:3.30.470.20 221 351 1.2E-5 T 13-10-2018 AP3564_03005 108b53f3027d9bcd07c4fac4ffe8d2df 369 SUPERFAMILY SSF56059 127 332 1.23E-17 T 13-10-2018 AP3564_06140 8b67fc5b4fccef9e215b59b156ad1c4e 317 SUPERFAMILY SSF53613 1 306 1.71E-88 T 13-10-2018 IPR029056 Ribokinase-like AP3564_06140 8b67fc5b4fccef9e215b59b156ad1c4e 317 Gene3D G3DSA:3.40.1190.20 1 312 1.5E-93 T 13-10-2018 IPR029056 Ribokinase-like AP3564_06140 8b67fc5b4fccef9e215b59b156ad1c4e 317 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 253 266 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AP3564_06140 8b67fc5b4fccef9e215b59b156ad1c4e 317 Pfam PF00294 pfkB family carbohydrate kinase 1 300 3.5E-67 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB AP3564_02815 6a93b0f2df501c6ae72de751ca138203 382 SUPERFAMILY SSF53901 260 379 1.01E-36 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AP3564_02815 6a93b0f2df501c6ae72de751ca138203 382 SUPERFAMILY SSF53901 5 257 8.52E-71 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AP3564_02815 6a93b0f2df501c6ae72de751ca138203 382 PIRSF PIRSF000429 1 381 1.2E-127 T 13-10-2018 IPR002155 Thiolase GO:0016747 AP3564_02815 6a93b0f2df501c6ae72de751ca138203 382 ProSitePatterns PS00737 Thiolases signature 2. 326 342 - T 13-10-2018 IPR020613 Thiolase, conserved site GO:0016747 AP3564_02815 6a93b0f2df501c6ae72de751ca138203 382 Gene3D G3DSA:3.40.47.10 5 263 1.1E-141 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AP3564_02815 6a93b0f2df501c6ae72de751ca138203 382 Pfam PF00108 Thiolase, N-terminal domain 5 250 2.9E-71 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 AP3564_02815 6a93b0f2df501c6ae72de751ca138203 382 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 378 1.6E-135 T 13-10-2018 IPR002155 Thiolase GO:0016747 AP3564_02815 6a93b0f2df501c6ae72de751ca138203 382 Pfam PF02803 Thiolase, C-terminal domain 260 378 1.2E-40 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 AP3564_02815 6a93b0f2df501c6ae72de751ca138203 382 Gene3D G3DSA:3.40.47.10 124 376 1.1E-141 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AP3564_07235 45e115888ac7f01738b969ab2f8b5da2 253 SMART SM00346 2 89 3.0E-22 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AP3564_07235 45e115888ac7f01738b969ab2f8b5da2 253 Gene3D G3DSA:3.30.450.40 73 247 2.1E-56 T 13-10-2018 IPR029016 GAF-like domain superfamily AP3564_07235 45e115888ac7f01738b969ab2f8b5da2 253 Pfam PF09339 IclR helix-turn-helix domain 4 54 1.5E-11 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AP3564_07235 45e115888ac7f01738b969ab2f8b5da2 253 SUPERFAMILY SSF46785 3 73 1.63E-9 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_07235 45e115888ac7f01738b969ab2f8b5da2 253 SUPERFAMILY SSF55781 57 245 3.27E-52 T 13-10-2018 AP3564_07235 45e115888ac7f01738b969ab2f8b5da2 253 Gene3D G3DSA:1.10.10.10 1 68 1.1E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_07235 45e115888ac7f01738b969ab2f8b5da2 253 Pfam PF01614 Bacterial transcriptional regulator 117 241 5.2E-35 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal AP3564_09665 d20f15dcd1894e9366c3b5b715042110 248 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 66 227 2.0E-47 T 13-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 AP3564_09665 d20f15dcd1894e9366c3b5b715042110 248 SUPERFAMILY SSF55120 47 237 2.16E-45 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AP3564_09665 d20f15dcd1894e9366c3b5b715042110 248 SUPERFAMILY SSF55174 1 58 1.02E-13 T 13-10-2018 AP3564_09665 d20f15dcd1894e9366c3b5b715042110 248 Gene3D G3DSA:3.30.70.580 63 230 1.7E-56 T 13-10-2018 AP3564_09665 d20f15dcd1894e9366c3b5b715042110 248 Pfam PF01479 S4 domain 1 44 4.6E-14 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_09665 d20f15dcd1894e9366c3b5b715042110 248 Gene3D G3DSA:3.10.290.10 1 62 3.7E-19 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AP3564_09665 d20f15dcd1894e9366c3b5b715042110 248 Pfam PF00849 RNA pseudouridylate synthase 62 195 2.1E-19 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AP3564_09665 d20f15dcd1894e9366c3b5b715042110 248 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 100 114 - T 13-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 AP3564_09665 d20f15dcd1894e9366c3b5b715042110 248 Gene3D G3DSA:3.30.70.1560 129 212 1.7E-56 T 13-10-2018 AP3564_09665 d20f15dcd1894e9366c3b5b715042110 248 SMART SM00363 1 60 2.0E-11 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_18440 02bb385cbfc435247a5b1b78b01c9e0f 219 Pfam PF01791 DeoC/LacD family aldolase 6 214 8.0E-20 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AP3564_18440 02bb385cbfc435247a5b1b78b01c9e0f 219 Gene3D G3DSA:3.20.20.70 1 219 3.3E-100 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_18440 02bb385cbfc435247a5b1b78b01c9e0f 219 SUPERFAMILY SSF51569 3 216 1.15E-86 T 13-10-2018 AP3564_18440 02bb385cbfc435247a5b1b78b01c9e0f 219 Hamap MF_00114 Deoxyribose-phosphate aldolase [deoC]. 3 218 38.021 T 13-10-2018 IPR028581 Deoxyribose-phosphate aldolase type I GO:0004139 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180 AP3564_18440 02bb385cbfc435247a5b1b78b01c9e0f 219 PIRSF PIRSF001357 1 219 1.0E-82 T 13-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AP3564_18440 02bb385cbfc435247a5b1b78b01c9e0f 219 SMART SM01133 4 216 8.7E-105 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AP3564_18440 02bb385cbfc435247a5b1b78b01c9e0f 219 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 5 214 7.2E-90 T 13-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AP3564_14710 533090a7f232737b334ac22d48329f11 198 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 7 196 20.814 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 AP3564_14710 533090a7f232737b334ac22d48329f11 198 Pfam PF02660 Glycerol-3-phosphate acyltransferase 11 187 8.4E-53 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 AP3564_14710 533090a7f232737b334ac22d48329f11 198 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 1 197 8.2E-69 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 AP3564_14710 533090a7f232737b334ac22d48329f11 198 SMART SM01207 10 188 2.8E-82 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 AP3564_10905 7105fdea29ea7b8d87e36686b614d1a1 164 Gene3D G3DSA:3.40.50.10490 1 160 8.2E-33 T 13-10-2018 AP3564_10905 7105fdea29ea7b8d87e36686b614d1a1 164 Pfam PF01380 SIS domain 11 135 3.3E-23 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AP3564_10905 7105fdea29ea7b8d87e36686b614d1a1 164 SUPERFAMILY SSF53697 2 158 4.45E-24 T 13-10-2018 AP3564_19460 9dbd8c3830dfda71f732f49f8e476cd0 261 Pfam PF12787 EcsC protein family 4 253 8.5E-34 T 13-10-2018 IPR024787 EcsC protein AP3564_19460 9dbd8c3830dfda71f732f49f8e476cd0 261 ProDom PD038378 ECSC YDBA CC1715 BH1193 ECSC-LIKE ESCC 20 256 5.0E-5 T 13-10-2018 AP3564_01890 c9666cdf204d03f667c187aa5cdae5ad 166 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 17 137 9.2E-48 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 AP3564_01890 c9666cdf204d03f667c187aa5cdae5ad 166 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 79 91 - T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 AP3564_01890 c9666cdf204d03f667c187aa5cdae5ad 166 Gene3D G3DSA:2.70.70.10 6 162 1.6E-59 T 13-10-2018 IPR011055 Duplicated hybrid motif AP3564_01890 c9666cdf204d03f667c187aa5cdae5ad 166 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 16 139 3.5E-54 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 AP3564_01890 c9666cdf204d03f667c187aa5cdae5ad 166 SUPERFAMILY SSF51261 15 162 2.96E-56 T 13-10-2018 IPR011055 Duplicated hybrid motif AP3564_00100 76f7aa64a0f6e88565fce4af635d3be1 309 SUPERFAMILY SSF48371 13 261 3.07E-5 T 13-10-2018 IPR016024 Armadillo-type fold AP3564_03420 76f7aa64a0f6e88565fce4af635d3be1 309 SUPERFAMILY SSF48371 13 261 3.07E-5 T 13-10-2018 IPR016024 Armadillo-type fold AP3564_04060 55da28d6bec0476fd72ff56e49eb0fff 184 TIGRFAM TIGR04567 RNAP_delt_lowGC: DNA-directed RNA polymerase delta subunit 12 93 7.8E-35 T 13-10-2018 IPR029757 DNA-directed RNA polymerase subunit delta GO:0006351|GO:0006355 AP3564_04060 55da28d6bec0476fd72ff56e49eb0fff 184 Pfam PF05066 HB1, ASXL, restriction endonuclease HTH domain 14 81 4.2E-8 T 13-10-2018 IPR007759 HB1/Asxl, restriction endonuclease HTH domain GO:0006351|GO:0006355 AP3564_04060 55da28d6bec0476fd72ff56e49eb0fff 184 Hamap MF_00357 Probable DNA-directed RNA polymerase subunit delta [rpoE]. 9 179 15.433 T 13-10-2018 IPR029757 DNA-directed RNA polymerase subunit delta GO:0006351|GO:0006355 AP3564_04060 55da28d6bec0476fd72ff56e49eb0fff 184 Gene3D G3DSA:1.10.10.1250 2 82 4.8E-34 T 13-10-2018 IPR038087 DNA-directed RNA polymerase subunit delta domain superfamily AP3564_09895 b23124ccdf2b11605743029f8d5e4f2a 356 SMART SM00382 27 214 4.9E-19 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_09895 b23124ccdf2b11605743029f8d5e4f2a 356 Gene3D G3DSA:3.40.50.300 3 301 1.5E-79 T 13-10-2018 AP3564_09895 b23124ccdf2b11605743029f8d5e4f2a 356 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_09895 b23124ccdf2b11605743029f8d5e4f2a 356 Pfam PF00005 ABC transporter 18 164 1.1E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_09895 b23124ccdf2b11605743029f8d5e4f2a 356 SUPERFAMILY SSF52540 3 247 9.87E-87 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_09895 b23124ccdf2b11605743029f8d5e4f2a 356 SUPERFAMILY SSF50331 240 349 1.7E-9 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AP3564_09895 b23124ccdf2b11605743029f8d5e4f2a 356 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 242 1.9E-119 T 13-10-2018 IPR005666 Sulphate transport system permease protein 1 GO:0008272|GO:0015419|GO:0016020|GO:0043190 KEGG: 00920+3.6.3.25 AP3564_09895 b23124ccdf2b11605743029f8d5e4f2a 356 Pfam PF12857 TOBE-like domain 289 340 6.7E-12 T 13-10-2018 IPR024765 TOBE-like domain KEGG: 00920+3.6.3.25 AP3564_11000 5e17fee0bba1f54510772bf3005aa650 577 SMART SM00382 360 547 1.5E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_11000 5e17fee0bba1f54510772bf3005aa650 577 ProSitePatterns PS00211 ABC transporters family signature. 473 487 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_11000 5e17fee0bba1f54510772bf3005aa650 577 Pfam PF00005 ABC transporter 351 500 1.2E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_11000 5e17fee0bba1f54510772bf3005aa650 577 Gene3D G3DSA:1.20.1560.10 1 314 2.4E-43 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AP3564_11000 5e17fee0bba1f54510772bf3005aa650 577 SUPERFAMILY SSF90123 4 308 1.27E-50 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AP3564_11000 5e17fee0bba1f54510772bf3005aa650 577 SUPERFAMILY SSF52540 333 571 9.29E-78 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_11000 5e17fee0bba1f54510772bf3005aa650 577 TIGRFAM TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit 12 542 3.5E-166 T 13-10-2018 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD GO:0005524|GO:0016020|GO:0042883 AP3564_11000 5e17fee0bba1f54510772bf3005aa650 577 Gene3D G3DSA:3.40.50.300 328 574 4.9E-82 T 13-10-2018 AP3564_11000 5e17fee0bba1f54510772bf3005aa650 577 Pfam PF00664 ABC transporter transmembrane region 15 280 1.8E-27 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AP3564_04025 26a0ab35b7189639d51232f2128793f7 321 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 3 309 5.6E-145 T 13-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 AP3564_04025 26a0ab35b7189639d51232f2128793f7 321 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 1 320 2.1E-158 T 13-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 AP3564_04025 26a0ab35b7189639d51232f2128793f7 321 Gene3D G3DSA:3.30.540.10 7 309 2.7E-135 T 13-10-2018 AP3564_04025 26a0ab35b7189639d51232f2128793f7 321 Gene3D G3DSA:3.40.190.90 122 283 2.7E-135 T 13-10-2018 AP3564_04025 26a0ab35b7189639d51232f2128793f7 321 PIRSF PIRSF004532 1 320 4.5E-151 T 13-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 AP3564_04025 26a0ab35b7189639d51232f2128793f7 321 SUPERFAMILY SSF56655 1 312 5.8E-114 T 13-10-2018 AP3564_07725 50688b151a50938cae3f6b3a0768f3ad 562 Pfam PF01973 Protein of unknown function DUF115 180 342 3.7E-32 T 13-10-2018 IPR002826 6-hydroxymethylpterin diphosphokinase MptE-like AP3564_05850 608809e732b4bd5a9ebf3fc55cc4543b 37 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 37 17.611 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05850 608809e732b4bd5a9ebf3fc55cc4543b 37 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 37 5.8E-24 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05850 608809e732b4bd5a9ebf3fc55cc4543b 37 Pfam PF00444 Ribosomal protein L36 1 37 3.2E-19 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05850 608809e732b4bd5a9ebf3fc55cc4543b 37 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 10 37 2.0E-8 T 13-10-2018 AP3564_05850 608809e732b4bd5a9ebf3fc55cc4543b 37 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 36 - T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05850 608809e732b4bd5a9ebf3fc55cc4543b 37 SUPERFAMILY SSF57840 1 37 6.28E-17 T 13-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_18280 086e435f7d87dff4d26962cb70421cf7 416 Pfam PF00271 Helicase conserved C-terminal domain 232 340 5.6E-25 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_18280 086e435f7d87dff4d26962cb70421cf7 416 Gene3D G3DSA:3.40.50.300 218 410 5.8E-41 T 13-10-2018 AP3564_18280 086e435f7d87dff4d26962cb70421cf7 416 Pfam PF00270 DEAD/DEAH box helicase 27 195 1.4E-42 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AP3564_18280 086e435f7d87dff4d26962cb70421cf7 416 Gene3D G3DSA:3.40.50.300 1 217 2.6E-66 T 13-10-2018 AP3564_18280 086e435f7d87dff4d26962cb70421cf7 416 SMART SM00487 22 223 9.7E-51 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AP3564_18280 086e435f7d87dff4d26962cb70421cf7 416 SUPERFAMILY SSF52540 71 361 4.24E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_18280 086e435f7d87dff4d26962cb70421cf7 416 SMART SM00490 259 340 3.3E-26 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_02280 feb357072c25b2ac8c873f0ea1b24298 288 Gene3D G3DSA:1.10.10.10 1 91 4.6E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_02280 feb357072c25b2ac8c873f0ea1b24298 288 Pfam PF03466 LysR substrate binding domain 88 287 1.2E-37 T 13-10-2018 IPR005119 LysR, substrate-binding AP3564_02280 feb357072c25b2ac8c873f0ea1b24298 288 SUPERFAMILY SSF46785 1 85 6.34E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_02280 feb357072c25b2ac8c873f0ea1b24298 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.6E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_02280 feb357072c25b2ac8c873f0ea1b24298 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.6E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_02280 feb357072c25b2ac8c873f0ea1b24298 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.6E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_02280 feb357072c25b2ac8c873f0ea1b24298 288 SUPERFAMILY SSF53850 90 287 2.02E-35 T 13-10-2018 AP3564_02280 feb357072c25b2ac8c873f0ea1b24298 288 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 9.7E-19 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_02280 feb357072c25b2ac8c873f0ea1b24298 288 Gene3D G3DSA:3.40.190.290 92 288 2.9E-44 T 13-10-2018 AP3564_15370 fe874eadb5c6eb56501148e0c035fab7 328 Gene3D G3DSA:3.40.50.12570 193 286 1.4E-66 T 13-10-2018 AP3564_15370 fe874eadb5c6eb56501148e0c035fab7 328 PIRSF PIRSF009290 1 328 6.4E-98 T 13-10-2018 IPR024713 Fructosamine deglycase FrlB AP3564_15370 fe874eadb5c6eb56501148e0c035fab7 328 SUPERFAMILY SSF53697 8 328 1.48E-61 T 13-10-2018 AP3564_15370 fe874eadb5c6eb56501148e0c035fab7 328 Pfam PF01380 SIS domain 25 143 3.9E-15 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AP3564_15370 fe874eadb5c6eb56501148e0c035fab7 328 Gene3D G3DSA:1.10.10.2240 158 310 1.4E-66 T 13-10-2018 AP3564_15370 fe874eadb5c6eb56501148e0c035fab7 328 Gene3D G3DSA:3.40.50.10490 2 155 1.5E-42 T 13-10-2018 AP3564_15335 c94669b49e90ec0dcac8e3cd73cd64c4 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 106 288 2.0E-16 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AP3564_15335 c94669b49e90ec0dcac8e3cd73cd64c4 295 Gene3D G3DSA:1.10.3720.10 21 286 8.0E-59 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_15335 c94669b49e90ec0dcac8e3cd73cd64c4 295 SUPERFAMILY SSF161098 30 295 1.21E-67 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_12835 8741847deafdbccb5dafd08d440600ab 422 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 329 420 3.7E-28 T 13-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 AP3564_12835 8741847deafdbccb5dafd08d440600ab 422 Gene3D G3DSA:3.40.50.1100 24 327 5.4E-120 T 13-10-2018 AP3564_12835 8741847deafdbccb5dafd08d440600ab 422 Gene3D G3DSA:3.40.50.1100 59 158 5.4E-120 T 13-10-2018 AP3564_12835 8741847deafdbccb5dafd08d440600ab 422 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 51 64 - T 13-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 AP3564_12835 8741847deafdbccb5dafd08d440600ab 422 TIGRFAM TIGR02079 THD1: threonine dehydratase 14 422 2.2E-199 T 13-10-2018 IPR011820 L-threonine dehydratase biosynthetic IlvA GO:0004794 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 AP3564_12835 8741847deafdbccb5dafd08d440600ab 422 Gene3D G3DSA:3.40.1020.10 329 422 2.7E-10 T 13-10-2018 IPR038110 Threonine dehydratase, ACT-like domain superfamily KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 AP3564_12835 8741847deafdbccb5dafd08d440600ab 422 SUPERFAMILY SSF53686 13 365 3.4E-100 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AP3564_12835 8741847deafdbccb5dafd08d440600ab 422 SUPERFAMILY SSF55021 339 415 1.92E-11 T 13-10-2018 AP3564_12835 8741847deafdbccb5dafd08d440600ab 422 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 25 316 3.1E-76 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AP3564_17230 afb5ddd9094f31d72ff886cafbbee051 151 Pfam PF08757 CotH kinase protein 1 144 8.6E-28 T 13-10-2018 IPR014867 Spore coat protein CotH AP3564_09140 a21354ef2277435d687ede1b25873853 176 SUPERFAMILY SSF109604 14 137 6.28E-24 T 13-10-2018 AP3564_09140 a21354ef2277435d687ede1b25873853 176 SMART SM00471 19 148 1.5E-7 T 13-10-2018 IPR003607 HD/PDEase domain AP3564_09140 a21354ef2277435d687ede1b25873853 176 Gene3D G3DSA:1.10.3210.10 5 174 2.6E-20 T 13-10-2018 AP3564_09140 a21354ef2277435d687ede1b25873853 176 TIGRFAM TIGR00277 HDIG: HDIG domain 22 92 3.5E-8 T 13-10-2018 IPR006675 HDIG domain AP3564_09140 a21354ef2277435d687ede1b25873853 176 Pfam PF01966 HD domain 24 137 5.6E-15 T 13-10-2018 IPR006674 HD domain AP3564_04045 8137f933db3debb2ac76f13d1379d7b4 123 Gene3D G3DSA:3.40.50.2300 1 123 3.3E-44 T 13-10-2018 AP3564_04045 8137f933db3debb2ac76f13d1379d7b4 123 Pfam PF00072 Response regulator receiver domain 5 114 6.1E-32 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_04045 8137f933db3debb2ac76f13d1379d7b4 123 SUPERFAMILY SSF52172 4 119 4.84E-40 T 13-10-2018 IPR011006 CheY-like superfamily AP3564_04045 8137f933db3debb2ac76f13d1379d7b4 123 SMART SM00448 3 114 1.3E-34 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_00590 262ae67b61bcefd9ae991bbe3a3d3243 294 Pfam PF06574 FAD synthetase 16 168 4.6E-50 T 13-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 AP3564_00590 262ae67b61bcefd9ae991bbe3a3d3243 294 Gene3D G3DSA:3.40.50.620 4 189 1.3E-52 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AP3564_00590 262ae67b61bcefd9ae991bbe3a3d3243 294 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 20 46 2.1E-7 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AP3564_00590 262ae67b61bcefd9ae991bbe3a3d3243 294 SUPERFAMILY SSF52374 19 185 4.56E-30 T 13-10-2018 AP3564_05005 5ecef8675f0367ccdf5dbdc0cc6b4925 108 Pfam PF02575 YbaB/EbfC DNA-binding family 13 103 1.2E-36 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family AP3564_05005 5ecef8675f0367ccdf5dbdc0cc6b4925 108 SUPERFAMILY SSF82607 13 107 4.84E-36 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily AP3564_05005 5ecef8675f0367ccdf5dbdc0cc6b4925 108 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 2 107 1.6E-35 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family AP3564_05005 5ecef8675f0367ccdf5dbdc0cc6b4925 108 PIRSF PIRSF004555 5 108 8.7E-42 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family AP3564_05005 5ecef8675f0367ccdf5dbdc0cc6b4925 108 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 7 101 24.124 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family AP3564_05005 5ecef8675f0367ccdf5dbdc0cc6b4925 108 Gene3D G3DSA:3.30.1310.10 3 108 2.8E-41 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily AP3564_16860 969304ee2bec7448b90a4e97b74bbaa7 207 Gene3D G3DSA:1.20.120.80 21 206 1.1E-48 T 13-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_16860 969304ee2bec7448b90a4e97b74bbaa7 207 SUPERFAMILY SSF81452 21 204 7.85E-52 T 13-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_16860 969304ee2bec7448b90a4e97b74bbaa7 207 Pfam PF00510 Cytochrome c oxidase subunit III 28 204 3.5E-15 T 13-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_18605 91bc1ffd5a2c60473f13c351cd823182 585 Pfam PF03717 Penicillin-binding Protein dimerisation domain 59 218 1.1E-6 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AP3564_18605 91bc1ffd5a2c60473f13c351cd823182 585 Pfam PF00905 Penicillin binding protein transpeptidase domain 262 576 1.2E-57 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AP3564_18605 91bc1ffd5a2c60473f13c351cd823182 585 Gene3D G3DSA:3.30.70.2110 92 149 1.5E-6 T 13-10-2018 AP3564_18605 91bc1ffd5a2c60473f13c351cd823182 585 Gene3D G3DSA:3.90.1310.10 150 203 1.5E-6 T 13-10-2018 AP3564_18605 91bc1ffd5a2c60473f13c351cd823182 585 Gene3D G3DSA:2.20.70.70 204 222 1.5E-6 T 13-10-2018 AP3564_18605 91bc1ffd5a2c60473f13c351cd823182 585 SUPERFAMILY SSF56519 47 221 1.57E-19 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 AP3564_18605 91bc1ffd5a2c60473f13c351cd823182 585 SUPERFAMILY SSF56601 187 582 5.45E-67 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AP3564_18605 91bc1ffd5a2c60473f13c351cd823182 585 Gene3D G3DSA:3.40.710.10 241 585 1.8E-77 T 13-10-2018 AP3564_07945 733554f91bab50a755605d6727d1c49f 164 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 2 153 7.1E-64 T 13-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AP3564_07945 733554f91bab50a755605d6727d1c49f 164 Pfam PF01791 DeoC/LacD family aldolase 13 151 1.1E-14 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AP3564_07945 733554f91bab50a755605d6727d1c49f 164 Gene3D G3DSA:3.20.20.70 1 157 7.0E-68 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_07945 733554f91bab50a755605d6727d1c49f 164 SUPERFAMILY SSF51569 2 155 3.14E-58 T 13-10-2018 AP3564_07945 733554f91bab50a755605d6727d1c49f 164 PIRSF PIRSF001357 1 163 4.0E-57 T 13-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AP3564_07945 733554f91bab50a755605d6727d1c49f 164 SMART SM01133 1 155 5.4E-47 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AP3564_16565 aeecf5e9e43cc93fc2a404c7b48a085b 181 SUPERFAMILY SSF53271 6 172 4.59E-46 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like AP3564_16565 aeecf5e9e43cc93fc2a404c7b48a085b 181 Gene3D G3DSA:3.40.50.2020 1 181 5.2E-63 T 13-10-2018 AP3564_16565 aeecf5e9e43cc93fc2a404c7b48a085b 181 Pfam PF00156 Phosphoribosyl transferase domain 7 158 4.1E-24 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AP3564_16565 aeecf5e9e43cc93fc2a404c7b48a085b 181 Hamap MF_01219 Bifunctional protein PyrR [pyrR]. 4 179 39.744 T 13-10-2018 IPR023050 Bifunctional protein PyrR KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 AP3564_16695 f961987c76fe05cedefa599e18e19065 492 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 21 486 2.3E-175 T 13-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 AP3564_16695 f961987c76fe05cedefa599e18e19065 492 Gene3D G3DSA:3.90.190.20 340 492 2.6E-63 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AP3564_16695 f961987c76fe05cedefa599e18e19065 492 Gene3D G3DSA:3.40.1390.10 1 99 1.8E-27 T 13-10-2018 AP3564_16695 f961987c76fe05cedefa599e18e19065 492 SUPERFAMILY SSF53244 335 486 4.19E-49 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AP3564_16695 f961987c76fe05cedefa599e18e19065 492 SUPERFAMILY SSF63418 5 98 1.83E-25 T 13-10-2018 IPR035911 MurE/MurF, N-terminal AP3564_16695 f961987c76fe05cedefa599e18e19065 492 SUPERFAMILY SSF53623 100 334 9.62E-77 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AP3564_16695 f961987c76fe05cedefa599e18e19065 492 Pfam PF08245 Mur ligase middle domain 109 314 2.6E-56 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 AP3564_16695 f961987c76fe05cedefa599e18e19065 492 Pfam PF02875 Mur ligase family, glutamate ligase domain 335 419 8.4E-25 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 AP3564_16695 f961987c76fe05cedefa599e18e19065 492 Gene3D G3DSA:3.40.1190.10 100 339 1.1E-91 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AP3564_16695 f961987c76fe05cedefa599e18e19065 492 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 1 486 36.683 T 13-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 AP3564_16695 f961987c76fe05cedefa599e18e19065 492 Pfam PF01225 Mur ligase family, catalytic domain 22 97 1.1E-12 T 13-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 AP3564_18955 c1024c5025f82761d891aeee4fd881ee 427 SUPERFAMILY SSF53244 295 424 3.3E-29 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AP3564_18955 c1024c5025f82761d891aeee4fd881ee 427 Gene3D G3DSA:3.90.190.20 295 427 3.1E-36 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AP3564_18955 c1024c5025f82761d891aeee4fd881ee 427 TIGRFAM TIGR01499 folC: bifunctional protein FolC 24 421 9.5E-125 T 13-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 AP3564_18955 c1024c5025f82761d891aeee4fd881ee 427 PIRSF PIRSF001563 1 427 4.0E-152 T 13-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 AP3564_18955 c1024c5025f82761d891aeee4fd881ee 427 Gene3D G3DSA:3.40.1190.10 1 292 7.5E-96 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AP3564_18955 c1024c5025f82761d891aeee4fd881ee 427 Pfam PF02875 Mur ligase family, glutamate ligase domain 293 369 9.1E-15 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 AP3564_18955 c1024c5025f82761d891aeee4fd881ee 427 SUPERFAMILY SSF53623 3 293 6.41E-93 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AP3564_18955 c1024c5025f82761d891aeee4fd881ee 427 Pfam PF08245 Mur ligase middle domain 46 266 5.6E-12 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 AP3564_19065 8c3449a2f40f3fe4a665600a60062ea5 514 Gene3D G3DSA:3.30.160.270 394 500 1.0E-11 T 13-10-2018 AP3564_19065 8c3449a2f40f3fe4a665600a60062ea5 514 SUPERFAMILY SSF51569 2 290 1.05E-97 T 13-10-2018 AP3564_19065 8c3449a2f40f3fe4a665600a60062ea5 514 SMART SM00917 368 500 2.0E-34 T 13-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AP3564_19065 8c3449a2f40f3fe4a665600a60062ea5 514 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 1 509 43.436 T 13-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AP3564_19065 8c3449a2f40f3fe4a665600a60062ea5 514 Gene3D G3DSA:1.10.238.260 279 393 2.0E-38 T 13-10-2018 AP3564_19065 8c3449a2f40f3fe4a665600a60062ea5 514 Pfam PF00682 HMGL-like 3 272 1.4E-94 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 AP3564_19065 8c3449a2f40f3fe4a665600a60062ea5 514 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 11 27 - T 13-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AP3564_19065 8c3449a2f40f3fe4a665600a60062ea5 514 Pfam PF08502 LeuA allosteric (dimerisation) domain 368 499 1.0E-37 T 13-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AP3564_19065 8c3449a2f40f3fe4a665600a60062ea5 514 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 3 497 2.4E-233 T 13-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AP3564_19065 8c3449a2f40f3fe4a665600a60062ea5 514 SUPERFAMILY SSF110921 397 499 4.84E-21 T 13-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AP3564_19065 8c3449a2f40f3fe4a665600a60062ea5 514 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 198 211 - T 13-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AP3564_19065 8c3449a2f40f3fe4a665600a60062ea5 514 Gene3D G3DSA:3.20.20.70 1 275 8.0E-114 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_04420 c07224b786a97886b401768fc2e1762f 263 SUPERFAMILY SSF161098 67 255 2.49E-36 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_04420 c07224b786a97886b401768fc2e1762f 263 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 16 262 5.3E-93 T 13-10-2018 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 AP3564_04420 c07224b786a97886b401768fc2e1762f 263 Gene3D G3DSA:1.10.3720.10 64 262 1.6E-35 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_04420 c07224b786a97886b401768fc2e1762f 263 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 90 251 7.5E-20 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AP3564_09005 b7b8117f74ec53871a714bdcaad15483 337 Pfam PF01551 Peptidase family M23 213 311 3.9E-21 T 13-10-2018 IPR016047 Peptidase M23 AP3564_09005 b7b8117f74ec53871a714bdcaad15483 337 SUPERFAMILY SSF51261 146 324 6.28E-34 T 13-10-2018 IPR011055 Duplicated hybrid motif AP3564_09005 b7b8117f74ec53871a714bdcaad15483 337 Gene3D G3DSA:2.70.70.10 168 335 3.9E-57 T 13-10-2018 IPR011055 Duplicated hybrid motif AP3564_07580 02d0caaed388b49b08048aec060f26d0 120 Pfam PF10066 Uncharacterized conserved protein (DUF2304) 4 107 5.2E-20 T 13-10-2018 IPR019277 Protein of unknown function DUF2304 AP3564_05820 3b60c1d80d6b6aec0ce22dcf27267af6 146 ProSitePatterns PS00475 Ribosomal protein L15 signature. 110 140 - T 13-10-2018 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05820 3b60c1d80d6b6aec0ce22dcf27267af6 146 SUPERFAMILY SSF52080 4 143 1.05E-52 T 13-10-2018 IPR036227 Ribosomal L18e/L15P superfamily AP3564_05820 3b60c1d80d6b6aec0ce22dcf27267af6 146 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 143 7.2E-58 T 13-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05820 3b60c1d80d6b6aec0ce22dcf27267af6 146 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 146 23.546 T 13-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 AP3564_05820 3b60c1d80d6b6aec0ce22dcf27267af6 146 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 144 1.2E-40 T 13-10-2018 IPR021131 Ribosomal protein L18e/L15P AP3564_05820 3b60c1d80d6b6aec0ce22dcf27267af6 146 Gene3D G3DSA:3.100.10.10 66 146 7.4E-30 T 13-10-2018 AP3564_02655 4f5e1b70abaf2ac384fb9a3f9534e53b 283 Pfam PF09375 Imelysin 50 276 2.9E-38 T 13-10-2018 IPR018976 Imelysin-like domain AP3564_02655 4f5e1b70abaf2ac384fb9a3f9534e53b 283 Gene3D G3DSA:1.20.1420.20 40 282 2.9E-94 T 13-10-2018 IPR038352 Imelysin-like domain superfamily AP3564_03160 d8d88ef02fd84e25cef227352fe57249 703 Gene3D G3DSA:3.90.1310.20 42 494 2.2E-195 T 13-10-2018 AP3564_03160 d8d88ef02fd84e25cef227352fe57249 703 Gene3D G3DSA:1.10.3810.10 56 246 2.2E-195 T 13-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AP3564_03160 d8d88ef02fd84e25cef227352fe57249 703 SUPERFAMILY SSF56601 202 601 3.38E-106 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AP3564_03160 d8d88ef02fd84e25cef227352fe57249 703 SUPERFAMILY SSF53955 35 244 4.5E-73 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily AP3564_03160 d8d88ef02fd84e25cef227352fe57249 703 Pfam PF00912 Transglycosylase 46 220 2.9E-65 T 13-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AP3564_03160 d8d88ef02fd84e25cef227352fe57249 703 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 56 585 9.7E-184 T 13-10-2018 AP3564_03160 d8d88ef02fd84e25cef227352fe57249 703 Pfam PF00905 Penicillin binding protein transpeptidase domain 312 584 8.2E-50 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AP3564_03160 d8d88ef02fd84e25cef227352fe57249 703 Gene3D G3DSA:3.40.710.10 286 599 2.2E-195 T 13-10-2018 AP3564_09220 034d8b83a5e9ee615199dedbd9b75762 95 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 31 83 2.7E-17 T 13-10-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 AP3564_09220 034d8b83a5e9ee615199dedbd9b75762 95 PIRSF PIRSF028784 1 92 2.5E-30 T 13-10-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 AP3564_06145 f9c4a2a1fab4cf4f4c1357da462feb0f 212 Gene3D G3DSA:3.20.20.70 1 209 2.3E-72 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_06145 f9c4a2a1fab4cf4f4c1357da462feb0f 212 SMART SM00934 2 201 7.8E-36 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AP3564_06145 f9c4a2a1fab4cf4f4c1357da462feb0f 212 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 1 199 8.9E-25 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AP3564_06145 f9c4a2a1fab4cf4f4c1357da462feb0f 212 SUPERFAMILY SSF51366 2 208 1.47E-37 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AP3564_05010 70a09b065087401de14aa4cf4a8b121c 198 SUPERFAMILY SSF111304 1 198 1.7E-80 T 13-10-2018 IPR023627 Recombination protein RecR AP3564_05010 70a09b065087401de14aa4cf4a8b121c 198 Pfam PF02132 RecR protein 40 78 1.4E-16 T 13-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger AP3564_05010 70a09b065087401de14aa4cf4a8b121c 198 ProSitePatterns PS01300 RecR protein signature. 57 78 - T 13-10-2018 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 AP3564_05010 70a09b065087401de14aa4cf4a8b121c 198 Pfam PF13662 Toprim domain 80 171 5.1E-27 T 13-10-2018 IPR006171 TOPRIM domain AP3564_05010 70a09b065087401de14aa4cf4a8b121c 198 TIGRFAM TIGR00615 recR: recombination protein RecR 1 196 4.0E-91 T 13-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 AP3564_05010 70a09b065087401de14aa4cf4a8b121c 198 Gene3D G3DSA:1.10.8.420 1 53 2.1E-21 T 13-10-2018 AP3564_05010 70a09b065087401de14aa4cf4a8b121c 198 SMART SM00493 80 165 2.6E-17 T 13-10-2018 IPR006171 TOPRIM domain AP3564_05010 70a09b065087401de14aa4cf4a8b121c 198 Hamap MF_00017 Recombination protein RecR [recR]. 1 198 113.134 T 13-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 AP3564_05010 70a09b065087401de14aa4cf4a8b121c 198 Gene3D G3DSA:3.40.1360.10 77 198 6.2E-51 T 13-10-2018 AP3564_14235 8337ce95ba166cb0e24ba779af7164a2 487 SUPERFAMILY SSF52540 275 483 1.61E-38 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_14235 8337ce95ba166cb0e24ba779af7164a2 487 Pfam PF00005 ABC transporter 26 63 3.2E-10 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_14235 8337ce95ba166cb0e24ba779af7164a2 487 SMART SM00382 30 173 1.5E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_14235 8337ce95ba166cb0e24ba779af7164a2 487 SMART SM00382 321 482 2.0E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_14235 8337ce95ba166cb0e24ba779af7164a2 487 Gene3D G3DSA:3.40.50.300 78 268 1.2E-26 T 13-10-2018 AP3564_14235 8337ce95ba166cb0e24ba779af7164a2 487 Pfam PF00005 ABC transporter 312 437 1.1E-19 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_14235 8337ce95ba166cb0e24ba779af7164a2 487 Gene3D G3DSA:3.40.50.300 290 486 1.5E-43 T 13-10-2018 AP3564_14235 8337ce95ba166cb0e24ba779af7164a2 487 Pfam PF12848 ABC transporter 167 230 3.9E-8 T 13-10-2018 IPR032781 ABC-transporter extension domain AP3564_14235 8337ce95ba166cb0e24ba779af7164a2 487 ProSitePatterns PS00211 ABC transporters family signature. 100 114 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_14235 8337ce95ba166cb0e24ba779af7164a2 487 Gene3D G3DSA:3.40.50.300 1 77 1.1E-14 T 13-10-2018 AP3564_14235 8337ce95ba166cb0e24ba779af7164a2 487 SUPERFAMILY SSF52540 3 204 1.02E-36 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_19550 88baff0dc365dd9ccc76b9c14ba110e3 159 Gene3D G3DSA:3.30.450.40 10 159 3.6E-66 T 13-10-2018 IPR029016 GAF-like domain superfamily AP3564_19550 88baff0dc365dd9ccc76b9c14ba110e3 159 ProSitePatterns PS01320 Uncharacterized protein family UPF0067 signature. 98 115 - T 13-10-2018 IPR000614 Free Met sulfoxide reductase conserved site AP3564_19550 88baff0dc365dd9ccc76b9c14ba110e3 159 SUPERFAMILY SSF55781 11 157 7.61E-46 T 13-10-2018 AP3564_19550 88baff0dc365dd9ccc76b9c14ba110e3 159 Pfam PF13185 GAF domain 48 154 2.4E-12 T 13-10-2018 IPR003018 GAF domain GO:0005515 AP3564_07665 fdf23fa3678b8d032c2fd53c59f49bb1 91 Pfam PF10719 Late competence development protein ComFB 4 84 9.3E-17 T 13-10-2018 IPR019657 Late competence development protein ComFB AP3564_13960 0d0ac4f5540c3fa4b6929f41753076e4 188 Gene3D G3DSA:3.40.50.150 2 186 6.4E-47 T 13-10-2018 AP3564_13960 0d0ac4f5540c3fa4b6929f41753076e4 188 Pfam PF08241 Methyltransferase domain 42 138 2.6E-18 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AP3564_13960 0d0ac4f5540c3fa4b6929f41753076e4 188 SUPERFAMILY SSF53335 26 143 8.85E-29 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_03950 de666b1cd309142b65166c3b10e2413e 182 PIRSF PIRSF007510 3 182 2.1E-82 T 13-10-2018 IPR006340 Protein of unknown function DUF436 AP3564_03950 de666b1cd309142b65166c3b10e2413e 182 Hamap MF_00800 UPF0340 protein . 1 182 92.784 T 13-10-2018 IPR006340 Protein of unknown function DUF436 AP3564_03950 de666b1cd309142b65166c3b10e2413e 182 Pfam PF04260 Protein of unknown function (DUF436) 13 180 1.6E-79 T 13-10-2018 IPR006340 Protein of unknown function DUF436 AP3564_03950 de666b1cd309142b65166c3b10e2413e 182 ProDom PD102102 UPF0340 3D-STRUCTURE YWLG SMU.87 STU1894 BT9727_4999 TRANSFERASE TTE0860 SPY1898/M5005_SPY1614 TT1679 15 180 2.0E-67 T 13-10-2018 IPR006340 Protein of unknown function DUF436 AP3564_03950 de666b1cd309142b65166c3b10e2413e 182 SUPERFAMILY SSF110710 5 181 1.52E-78 T 13-10-2018 IPR028345 Aminoglycoside 3-N-acetyltransferase-like AP3564_03950 de666b1cd309142b65166c3b10e2413e 182 Gene3D G3DSA:3.40.50.10360 4 182 2.0E-81 T 13-10-2018 IPR028345 Aminoglycoside 3-N-acetyltransferase-like AP3564_03950 de666b1cd309142b65166c3b10e2413e 182 TIGRFAM TIGR01440 TIGR01440: TIGR01440 family protein 10 180 2.2E-82 T 13-10-2018 IPR006340 Protein of unknown function DUF436 AP3564_11455 751c9ea0f5a5e3adc74203f745c5bdde 359 TIGRFAM TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase 5 353 1.1E-94 T 13-10-2018 IPR005860 L-threonine-O-3-phosphate decarboxylase GO:0003824|GO:0009236 KEGG: 00860+4.1.1.81|MetaCyc: PWY-5443 AP3564_11455 751c9ea0f5a5e3adc74203f745c5bdde 359 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 212 225 - T 13-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 AP3564_11455 751c9ea0f5a5e3adc74203f745c5bdde 359 SUPERFAMILY SSF53383 18 355 8.57E-81 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_11455 751c9ea0f5a5e3adc74203f745c5bdde 359 Gene3D G3DSA:3.90.1150.10 24 353 2.1E-110 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_11455 751c9ea0f5a5e3adc74203f745c5bdde 359 Pfam PF00155 Aminotransferase class I and II 23 352 4.6E-51 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AP3564_11455 751c9ea0f5a5e3adc74203f745c5bdde 359 Gene3D G3DSA:3.40.640.10 36 260 2.1E-110 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_14855 2508cae56b7c3008822931f49adb9559 310 Pfam PF00248 Aldo/keto reductase family 16 308 2.8E-77 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain AP3564_14855 2508cae56b7c3008822931f49adb9559 310 Gene3D G3DSA:3.20.20.100 2 310 3.1E-120 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AP3564_14855 2508cae56b7c3008822931f49adb9559 310 PRINTS PR00069 Aldo-keto reductase signature 111 129 3.0E-18 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AP3564_14855 2508cae56b7c3008822931f49adb9559 310 PRINTS PR00069 Aldo-keto reductase signature 142 159 3.0E-18 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AP3564_14855 2508cae56b7c3008822931f49adb9559 310 PRINTS PR00069 Aldo-keto reductase signature 45 69 3.0E-18 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AP3564_14855 2508cae56b7c3008822931f49adb9559 310 PRINTS PR00069 Aldo-keto reductase signature 242 266 3.0E-18 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AP3564_14855 2508cae56b7c3008822931f49adb9559 310 SUPERFAMILY SSF51430 4 309 6.68E-100 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AP3564_14855 2508cae56b7c3008822931f49adb9559 310 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 142 159 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AP3564_16235 cd2014f85b2182127ab16b0bc2849c0f 467 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 6 467 4.5E-218 T 13-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 AP3564_16235 cd2014f85b2182127ab16b0bc2849c0f 467 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 359 434 7.5E-9 T 13-10-2018 IPR019489 Clp ATPase, C-terminal AP3564_16235 cd2014f85b2182127ab16b0bc2849c0f 467 Pfam PF07724 AAA domain (Cdc48 subfamily) 213 353 4.6E-42 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AP3564_16235 cd2014f85b2182127ab16b0bc2849c0f 467 Gene3D G3DSA:3.40.50.300 223 334 3.7E-26 T 13-10-2018 AP3564_16235 cd2014f85b2182127ab16b0bc2849c0f 467 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 55 107 1.1E-6 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AP3564_16235 cd2014f85b2182127ab16b0bc2849c0f 467 SUPERFAMILY SSF52540 5 465 4.48E-94 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_16235 cd2014f85b2182127ab16b0bc2849c0f 467 Gene3D G3DSA:1.10.8.10 250 270 3.7E-26 T 13-10-2018 AP3564_16235 cd2014f85b2182127ab16b0bc2849c0f 467 Gene3D G3DSA:1.10.8.60 359 464 2.0E-41 T 13-10-2018 AP3564_16235 cd2014f85b2182127ab16b0bc2849c0f 467 SMART SM01086 359 458 2.2E-25 T 13-10-2018 IPR019489 Clp ATPase, C-terminal AP3564_16235 cd2014f85b2182127ab16b0bc2849c0f 467 Gene3D G3DSA:3.40.50.300 4 132 3.2E-35 T 13-10-2018 AP3564_16235 cd2014f85b2182127ab16b0bc2849c0f 467 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 3 467 44.491 T 13-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 AP3564_16235 cd2014f85b2182127ab16b0bc2849c0f 467 SMART SM00382 51 360 2.0E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_11440 09d3dbead8f29c2a4e72e6beaf9f7207 353 Pfam PF01032 FecCD transport family 25 346 1.5E-94 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 AP3564_11440 09d3dbead8f29c2a4e72e6beaf9f7207 353 Gene3D G3DSA:1.10.3470.10 9 352 8.2E-103 T 13-10-2018 IPR037294 ABC transporter, BtuC-like AP3564_11440 09d3dbead8f29c2a4e72e6beaf9f7207 353 SUPERFAMILY SSF81345 6 346 8.63E-82 T 13-10-2018 IPR037294 ABC transporter, BtuC-like AP3564_15475 922469291dff254884d14540c5f20f5e 287 SUPERFAMILY SSF53098 119 284 1.77E-35 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_15475 922469291dff254884d14540c5f20f5e 287 Pfam PF13276 HTH-like domain 48 103 3.4E-13 T 13-10-2018 IPR025948 HTH-like domain AP3564_15475 922469291dff254884d14540c5f20f5e 287 SUPERFAMILY SSF46689 7 92 8.96E-5 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_15475 922469291dff254884d14540c5f20f5e 287 Gene3D G3DSA:3.30.420.10 123 276 3.1E-17 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AP3564_15475 922469291dff254884d14540c5f20f5e 287 Pfam PF00665 Integrase core domain 126 239 5.2E-28 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AP3564_15475 922469291dff254884d14540c5f20f5e 287 Pfam PF13384 Homeodomain-like domain 8 42 2.9E-6 T 13-10-2018 AP3564_01210 85fceb317158524f7ac0906987aba566 567 Gene3D G3DSA:1.10.287.950 265 566 1.5E-72 T 13-10-2018 AP3564_01210 85fceb317158524f7ac0906987aba566 567 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 12 37 7.5E-24 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AP3564_01210 85fceb317158524f7ac0906987aba566 567 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 466 495 7.5E-24 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AP3564_01210 85fceb317158524f7ac0906987aba566 567 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 418 447 7.5E-24 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AP3564_01210 85fceb317158524f7ac0906987aba566 567 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 389 416 7.5E-24 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AP3564_01210 85fceb317158524f7ac0906987aba566 567 Pfam PF00672 HAMP domain 219 258 1.1E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AP3564_01210 85fceb317158524f7ac0906987aba566 567 SMART SM00304 209 262 4.1E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AP3564_01210 85fceb317158524f7ac0906987aba566 567 Gene3D G3DSA:1.20.1480.50 165 264 1.4E-11 T 13-10-2018 AP3564_01210 85fceb317158524f7ac0906987aba566 567 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 351 519 9.0E-42 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AP3564_01210 85fceb317158524f7ac0906987aba566 567 SUPERFAMILY SSF58104 236 566 1.12E-72 T 13-10-2018 AP3564_01210 85fceb317158524f7ac0906987aba566 567 SMART SM00283 291 566 6.1E-74 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AP3564_16875 a52b9468222c847db6951006a3b692ee 305 Pfam PF01040 UbiA prenyltransferase family 40 289 8.2E-57 T 13-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 AP3564_16875 a52b9468222c847db6951006a3b692ee 305 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 82 104 - T 13-10-2018 IPR030470 UbiA prenyltransferase conserved site AP3564_16875 a52b9468222c847db6951006a3b692ee 305 Gene3D G3DSA:1.10.357.140 34 191 3.7E-15 T 13-10-2018 AP3564_16875 a52b9468222c847db6951006a3b692ee 305 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 24 300 1.2E-90 T 13-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 AP3564_16875 a52b9468222c847db6951006a3b692ee 305 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 22 304 18.223 T 13-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 AP3564_06305 e5f3472308bde1c040d2fa7a567f7d7e 451 TIGRFAM TIGR00797 matE: MATE efflux family protein 25 427 2.1E-88 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AP3564_06305 e5f3472308bde1c040d2fa7a567f7d7e 451 PIRSF PIRSF006603 5 451 3.5E-103 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AP3564_06305 e5f3472308bde1c040d2fa7a567f7d7e 451 Pfam PF01554 MatE 25 187 5.2E-34 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AP3564_06305 e5f3472308bde1c040d2fa7a567f7d7e 451 Pfam PF01554 MatE 253 414 1.0E-31 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AP3564_00880 28e462371a80abefd6e5b5de89d8c5c3 173 Gene3D G3DSA:1.10.3540.10 1 120 3.7E-13 T 13-10-2018 AP3564_00880 28e462371a80abefd6e5b5de89d8c5c3 173 Pfam PF08849 Putative inner membrane protein (DUF1819) 2 86 6.4E-15 T 13-10-2018 IPR014948 Protein of unknown function DUF1819, putative inner membrane AP3564_05605 7c560eb395f8259e1454f7d06ad867fc 230 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 2 222 42.589 T 13-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 AP3564_05605 7c560eb395f8259e1454f7d06ad867fc 230 Gene3D G3DSA:3.90.550.10 1 229 8.6E-84 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AP3564_05605 7c560eb395f8259e1454f7d06ad867fc 230 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 100 107 - T 13-10-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 AP3564_05605 7c560eb395f8259e1454f7d06ad867fc 230 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 5 223 9.8E-76 T 13-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 AP3564_05605 7c560eb395f8259e1454f7d06ad867fc 230 SUPERFAMILY SSF53448 3 223 4.28E-62 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AP3564_05605 7c560eb395f8259e1454f7d06ad867fc 230 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 5 222 4.8E-77 T 13-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 AP3564_02650 b0a4c62654532bf05e6f4a66fbe08614 432 SUPERFAMILY SSF54909 65 426 1.04E-91 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel AP3564_02650 b0a4c62654532bf05e6f4a66fbe08614 432 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 17 45 3.9E-4 T 13-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AP3564_02650 b0a4c62654532bf05e6f4a66fbe08614 432 Pfam PF04261 Dyp-type peroxidase family 70 421 8.5E-108 T 13-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 AP3564_02650 b0a4c62654532bf05e6f4a66fbe08614 432 TIGRFAM TIGR01412 tat_substr_1: Tat-translocated enzyme 15 431 3.6E-168 T 13-10-2018 IPR006313 Deferrochelatase/peroxidase EfeB GO:0004601|GO:0015684|GO:0020037|GO:0033212 AP3564_02650 b0a4c62654532bf05e6f4a66fbe08614 432 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 70 421 8.0E-96 T 13-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 AP3564_06320 d3051b361b9db0eb375327ea5640c347 248 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_06320 d3051b361b9db0eb375327ea5640c347 248 Gene3D G3DSA:3.40.50.300 1 248 1.1E-76 T 13-10-2018 AP3564_06320 d3051b361b9db0eb375327ea5640c347 248 SUPERFAMILY SSF52540 3 242 2.6E-75 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_06320 d3051b361b9db0eb375327ea5640c347 248 SMART SM00382 28 220 6.1E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_06320 d3051b361b9db0eb375327ea5640c347 248 Pfam PF00005 ABC transporter 19 172 5.2E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_06320 d3051b361b9db0eb375327ea5640c347 248 PIRSF PIRSF039085 1 248 3.6E-110 T 13-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AP3564_12000 d23fda1147b84fd2317258b663387f35 182 Pfam PF00578 AhpC/TSA family 6 141 1.2E-39 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AP3564_12000 d23fda1147b84fd2317258b663387f35 182 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 164 180 2.1E-4 T 13-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AP3564_12000 d23fda1147b84fd2317258b663387f35 182 Gene3D G3DSA:3.40.30.10 1 182 2.5E-74 T 13-10-2018 AP3564_12000 d23fda1147b84fd2317258b663387f35 182 PIRSF PIRSF000239 1 182 1.2E-60 T 13-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AP3564_12000 d23fda1147b84fd2317258b663387f35 182 SUPERFAMILY SSF52833 5 181 1.39E-59 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AP3564_00310 970f199b30f9fbb797c1550dda172576 138 Pfam PF01575 MaoC like domain 11 109 5.1E-29 T 13-10-2018 IPR002539 MaoC-like dehydratase domain AP3564_00310 970f199b30f9fbb797c1550dda172576 138 PRINTS PR01483 Fatty acid synthase signature 18 40 8.5E-5 T 13-10-2018 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 AP3564_00310 970f199b30f9fbb797c1550dda172576 138 PRINTS PR01483 Fatty acid synthase signature 40 61 8.5E-5 T 13-10-2018 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 AP3564_00310 970f199b30f9fbb797c1550dda172576 138 Gene3D G3DSA:3.10.129.10 1 137 3.7E-48 T 13-10-2018 AP3564_00310 970f199b30f9fbb797c1550dda172576 138 SUPERFAMILY SSF54637 4 135 4.04E-44 T 13-10-2018 IPR029069 HotDog domain superfamily AP3564_01785 9ae564a4258f7b6998c1e8fe79abfa0d 1511 TIGRFAM TIGR03928 T7_EssCb_Firm: type VII secretion protein EssC 195 1498 0.0 T 13-10-2018 IPR023839 Firmicutes EssC, C-terminal AP3564_01785 9ae564a4258f7b6998c1e8fe79abfa0d 1511 SUPERFAMILY SSF52540 631 883 1.03E-28 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_01785 9ae564a4258f7b6998c1e8fe79abfa0d 1511 Pfam PF12538 DNA transporter 5 111 3.5E-18 T 13-10-2018 IPR022206 Firmicutes EssC, N-terminal AP3564_01785 9ae564a4258f7b6998c1e8fe79abfa0d 1511 Gene3D G3DSA:3.40.50.300 1263 1511 1.9E-8 T 13-10-2018 AP3564_01785 9ae564a4258f7b6998c1e8fe79abfa0d 1511 Gene3D G3DSA:3.40.50.300 954 1252 1.0E-71 T 13-10-2018 AP3564_01785 9ae564a4258f7b6998c1e8fe79abfa0d 1511 Pfam PF01580 FtsK/SpoIIIE family 636 816 2.2E-29 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 AP3564_01785 9ae564a4258f7b6998c1e8fe79abfa0d 1511 Pfam PF01580 FtsK/SpoIIIE family 988 1187 1.6E-31 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 AP3564_01785 9ae564a4258f7b6998c1e8fe79abfa0d 1511 SUPERFAMILY SSF52540 981 1196 5.23E-17 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_01785 9ae564a4258f7b6998c1e8fe79abfa0d 1511 Gene3D G3DSA:3.40.50.300 610 902 4.2E-83 T 13-10-2018 AP3564_09935 5a97df185e958c16a4327f17bd64e112 614 PIRSF PIRSF001589 1 611 1.9E-143 T 13-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 AP3564_09935 5a97df185e958c16a4327f17bd64e112 614 SUPERFAMILY SSF56235 1 226 2.92E-64 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AP3564_09935 5a97df185e958c16a4327f17bd64e112 614 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 534 3.5E-165 T 13-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 AP3564_09935 5a97df185e958c16a4327f17bd64e112 614 Pfam PF00733 Asparagine synthase 241 588 3.3E-92 T 13-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 AP3564_09935 5a97df185e958c16a4327f17bd64e112 614 Gene3D G3DSA:3.60.20.10 2 185 1.7E-62 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AP3564_09935 5a97df185e958c16a4327f17bd64e112 614 SUPERFAMILY SSF52402 229 575 2.43E-71 T 13-10-2018 AP3564_09935 5a97df185e958c16a4327f17bd64e112 614 Pfam PF13537 Glutamine amidotransferase domain 48 169 7.2E-47 T 13-10-2018 IPR017932 Glutamine amidotransferase type 2 domain AP3564_10055 64dd7af84ac236e1aac9ace207ceb4d0 1025 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 668 866 6.3E-34 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AP3564_10055 64dd7af84ac236e1aac9ace207ceb4d0 1025 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 333 8.4E-82 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AP3564_10055 64dd7af84ac236e1aac9ace207ceb4d0 1025 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 830 837 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AP3564_10055 64dd7af84ac236e1aac9ace207ceb4d0 1025 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1012 12.254 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_10055 64dd7af84ac236e1aac9ace207ceb4d0 1025 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 164 178 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AP3564_10055 64dd7af84ac236e1aac9ace207ceb4d0 1025 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 296 325 1.4E-61 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_10055 64dd7af84ac236e1aac9ace207ceb4d0 1025 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 1.4E-61 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_10055 64dd7af84ac236e1aac9ace207ceb4d0 1025 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 1.4E-61 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_10055 64dd7af84ac236e1aac9ace207ceb4d0 1025 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 1.4E-61 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_10055 64dd7af84ac236e1aac9ace207ceb4d0 1025 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 1.4E-61 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_10055 64dd7af84ac236e1aac9ace207ceb4d0 1025 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 1.4E-61 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_10055 64dd7af84ac236e1aac9ace207ceb4d0 1025 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 378 396 1.4E-61 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_10055 64dd7af84ac236e1aac9ace207ceb4d0 1025 Gene3D G3DSA:3.30.470.20 661 922 3.1E-86 T 13-10-2018 AP3564_10055 64dd7af84ac236e1aac9ace207ceb4d0 1025 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 423 540 1.7E-38 T 13-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_10055 64dd7af84ac236e1aac9ace207ceb4d0 1025 SMART SM01096 420 540 1.7E-55 T 13-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_10055 64dd7af84ac236e1aac9ace207ceb4d0 1025 SUPERFAMILY SSF56059 128 399 5.48E-109 T 13-10-2018 AP3564_10055 64dd7af84ac236e1aac9ace207ceb4d0 1025 SUPERFAMILY SSF52440 552 670 6.62E-46 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AP3564_10055 64dd7af84ac236e1aac9ace207ceb4d0 1025 Gene3D G3DSA:3.30.470.20 119 401 2.4E-125 T 13-10-2018 AP3564_10055 64dd7af84ac236e1aac9ace207ceb4d0 1025 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 998 0.0 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_10055 64dd7af84ac236e1aac9ace207ceb4d0 1025 Gene3D G3DSA:3.40.50.20 549 657 7.3E-46 T 13-10-2018 AP3564_10055 64dd7af84ac236e1aac9ace207ceb4d0 1025 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 296 303 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AP3564_10055 64dd7af84ac236e1aac9ace207ceb4d0 1025 SUPERFAMILY SSF56059 668 921 4.42E-81 T 13-10-2018 AP3564_10055 64dd7af84ac236e1aac9ace207ceb4d0 1025 Gene3D G3DSA:1.10.1030.10 407 546 5.1E-41 T 13-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_10055 64dd7af84ac236e1aac9ace207ceb4d0 1025 Gene3D G3DSA:3.40.50.20 1 116 1.8E-46 T 13-10-2018 AP3564_10055 64dd7af84ac236e1aac9ace207ceb4d0 1025 SMART SM01209 674 837 0.0037 T 13-10-2018 AP3564_10055 64dd7af84ac236e1aac9ace207ceb4d0 1025 SUPERFAMILY SSF48108 394 541 1.7E-43 T 13-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AP3564_10055 64dd7af84ac236e1aac9ace207ceb4d0 1025 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 704 718 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AP3564_10055 64dd7af84ac236e1aac9ace207ceb4d0 1025 SUPERFAMILY SSF52440 1 127 1.01E-47 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AP3564_14160 f9023432879d6f3bd9c21d021c903fa7 282 Gene3D G3DSA:3.60.15.10 8 282 2.4E-88 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AP3564_14160 f9023432879d6f3bd9c21d021c903fa7 282 Pfam PF00753 Metallo-beta-lactamase superfamily 47 207 3.2E-12 T 13-10-2018 IPR001279 Metallo-beta-lactamase AP3564_14160 f9023432879d6f3bd9c21d021c903fa7 282 SMART SM00849 48 265 1.1E-14 T 13-10-2018 IPR001279 Metallo-beta-lactamase AP3564_14160 f9023432879d6f3bd9c21d021c903fa7 282 SUPERFAMILY SSF56281 7 281 3.28E-30 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AP3564_18755 23dc0d716c4967fc967c5c076403dbb6 129 Pfam PF12670 Protein of unknown function (DUF3792) 9 119 5.9E-23 T 13-10-2018 IPR023804 Protein of unknown function DUF3792, transmembrane AP3564_18755 23dc0d716c4967fc967c5c076403dbb6 129 TIGRFAM TIGR04086 TIGR04086_membr: putative membrane protein, TIGR04086 family 9 122 2.9E-27 T 13-10-2018 IPR023804 Protein of unknown function DUF3792, transmembrane AP3564_16230 9cca2270f0890743a0f7ccf79f46d8e0 259 PIRSF PIRSF011572 1 257 1.6E-123 T 13-10-2018 IPR014154 GTP-sensing transcriptional pleiotropic repressor CodY GO:0003677|GO:0003700|GO:0005525|GO:0045892 AP3564_16230 9cca2270f0890743a0f7ccf79f46d8e0 259 Gene3D G3DSA:3.30.450.40 1 159 1.1E-70 T 13-10-2018 IPR029016 GAF-like domain superfamily AP3564_16230 9cca2270f0890743a0f7ccf79f46d8e0 259 Pfam PF06018 CodY GAF-like domain 2 178 1.7E-81 T 13-10-2018 IPR010312 GTP-sensing transcriptional pleiotropic repressor CodY, N-terminal GO:0003677|GO:0005525 AP3564_16230 9cca2270f0890743a0f7ccf79f46d8e0 259 TIGRFAM TIGR02787 codY_Gpos: GTP-sensing transcriptional pleiotropic repressor CodY 3 253 6.7E-125 T 13-10-2018 IPR014154 GTP-sensing transcriptional pleiotropic repressor CodY GO:0003677|GO:0003700|GO:0005525|GO:0045892 AP3564_16230 9cca2270f0890743a0f7ccf79f46d8e0 259 Pfam PF08222 CodY helix-turn-helix domain 197 257 1.4E-37 T 13-10-2018 IPR013198 GTP-sensing helix-turn-helix, CodY, C-terminal AP3564_16230 9cca2270f0890743a0f7ccf79f46d8e0 259 Gene3D G3DSA:1.10.10.10 160 259 9.1E-47 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_16230 9cca2270f0890743a0f7ccf79f46d8e0 259 Hamap MF_00621 GTP-sensing transcriptional pleiotropic repressor CodY [codY]. 1 259 149.07 T 13-10-2018 IPR014154 GTP-sensing transcriptional pleiotropic repressor CodY GO:0003677|GO:0003700|GO:0005525|GO:0045892 AP3564_16230 9cca2270f0890743a0f7ccf79f46d8e0 259 SUPERFAMILY SSF46785 167 256 7.08E-42 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_17810 597126369da56f539609650fba7059b7 574 SUPERFAMILY SSF52540 1 220 6.49E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_17810 597126369da56f539609650fba7059b7 574 Gene3D G3DSA:3.40.50.300 261 566 8.8E-55 T 13-10-2018 AP3564_17810 597126369da56f539609650fba7059b7 574 Gene3D G3DSA:3.40.50.300 1 188 6.2E-24 T 13-10-2018 AP3564_17810 597126369da56f539609650fba7059b7 574 PIRSF PIRSF003128 1 569 1.3E-189 T 13-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 AP3564_17810 597126369da56f539609650fba7059b7 574 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 566 6.2E-196 T 13-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 AP3564_17810 597126369da56f539609650fba7059b7 574 SUPERFAMILY SSF52540 4 520 5.71E-30 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_17810 597126369da56f539609650fba7059b7 574 Pfam PF02463 RecF/RecN/SMC N terminal domain 1 520 2.5E-16 T 13-10-2018 IPR003395 RecF/RecN/SMC, N-terminal AP3564_18615 30b45c6ef6e28ada5995a8352c24cbb7 423 Pfam PF01136 Peptidase family U32 95 323 1.8E-88 T 13-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 AP3564_18615 30b45c6ef6e28ada5995a8352c24cbb7 423 Gene3D G3DSA:2.40.30.10 334 422 5.4E-37 T 13-10-2018 AP3564_18615 30b45c6ef6e28ada5995a8352c24cbb7 423 ProSitePatterns PS01276 Peptidase family U32 signature. 179 197 - T 13-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 AP3564_18615 30b45c6ef6e28ada5995a8352c24cbb7 423 Pfam PF16325 Peptidase family U32 C-terminal domain 339 419 1.3E-26 T 13-10-2018 IPR032525 Peptidase family U32, C-terminal AP3564_12320 35eb3ba2fbde17b68b29e415e4b2c9cf 522 Gene3D G3DSA:3.10.290.30 1 177 3.2E-50 T 13-10-2018 IPR024047 MM3350-like superfamily AP3564_12320 35eb3ba2fbde17b68b29e415e4b2c9cf 522 SUPERFAMILY SSF159941 2 142 3.53E-47 T 13-10-2018 IPR024047 MM3350-like superfamily AP3564_12320 35eb3ba2fbde17b68b29e415e4b2c9cf 522 Pfam PF07929 Plasmid pRiA4b ORF-3-like protein 2 141 5.1E-42 T 13-10-2018 IPR012912 Plasmid pRiA4b, Orf3 AP3564_13380 ad32ad39cb25725a2053343352c58358 256 Gene3D G3DSA:3.60.40.10 1 241 1.1E-63 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AP3564_13380 ad32ad39cb25725a2053343352c58358 256 SUPERFAMILY SSF81606 37 241 7.59E-7 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AP3564_13380 ad32ad39cb25725a2053343352c58358 256 SMART SM00331 24 241 3.6E-49 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AP3564_13380 ad32ad39cb25725a2053343352c58358 256 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 52 241 2.3E-49 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AP3564_15520 ba3e34ed79f1492cde08d9d01745e82d 573 Pfam PF05598 Transposase domain (DUF772) 69 139 9.1E-19 T 13-10-2018 IPR008490 Transposase InsH, N-terminal AP3564_15520 ba3e34ed79f1492cde08d9d01745e82d 573 Pfam PF13751 Transposase DDE domain 412 536 1.7E-30 T 13-10-2018 IPR025668 Transposase DDE domain AP3564_11545 882966f66f0e30fadc1f248c852d17f5 599 TIGRFAM TIGR02779 NHEJ_ligase_lig: DNA ligase D, ligase domain 4 301 3.4E-70 T 13-10-2018 IPR014146 DNA ligase D, ligase domain AP3564_11545 882966f66f0e30fadc1f248c852d17f5 599 SUPERFAMILY SSF56091 6 201 4.6E-39 T 13-10-2018 AP3564_11545 882966f66f0e30fadc1f248c852d17f5 599 Pfam PF01068 ATP dependent DNA ligase domain 15 201 2.9E-34 T 13-10-2018 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 AP3564_11545 882966f66f0e30fadc1f248c852d17f5 599 TIGRFAM TIGR02778 ligD_pol: DNA ligase D, polymerase domain 315 555 5.6E-86 T 13-10-2018 IPR014145 DNA ligase D, polymerase domain AP3564_11545 882966f66f0e30fadc1f248c852d17f5 599 Gene3D G3DSA:3.30.470.30 2 201 1.8E-40 T 13-10-2018 AP3564_11545 882966f66f0e30fadc1f248c852d17f5 599 Gene3D G3DSA:3.90.920.30 322 597 5.1E-80 T 13-10-2018 AP3564_11545 882966f66f0e30fadc1f248c852d17f5 599 TIGRFAM TIGR02776 NHEJ_ligase_prk: DNA ligase D 12 583 1.2E-174 T 13-10-2018 IPR014143 DNA ligase D AP3564_07685 a0b7e1d96a9ba5802d631196db52c87e 159 Gene3D G3DSA:1.20.58.300 2 130 2.0E-6 T 13-10-2018 AP3564_07685 a0b7e1d96a9ba5802d631196db52c87e 159 Pfam PF05130 FlgN protein 4 142 1.7E-20 T 13-10-2018 IPR007809 FlgN-like protein GO:0005515|GO:0044780 AP3564_07685 a0b7e1d96a9ba5802d631196db52c87e 159 SUPERFAMILY SSF140566 4 129 1.1E-15 T 13-10-2018 IPR036679 FlgN-like superfamily GO:0005515|GO:0044780 AP3564_07630 8ca5a0861d62159bd89330d3a28dd27a 351 ProSitePatterns PS01348 MraY family signature 2. 145 156 - T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AP3564_07630 8ca5a0861d62159bd89330d3a28dd27a 351 Pfam PF00953 Glycosyl transferase family 4 72 222 8.9E-41 T 13-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 AP3564_10395 b95c82354fc11abd52c4cf341235a7b4 805 Gene3D G3DSA:3.30.365.10 18 283 5.3E-110 T 13-10-2018 AP3564_10395 b95c82354fc11abd52c4cf341235a7b4 805 Gene3D G3DSA:3.30.365.10 368 773 8.5E-129 T 13-10-2018 AP3564_10395 b95c82354fc11abd52c4cf341235a7b4 805 Gene3D G3DSA:3.90.1170.50 35 130 5.3E-110 T 13-10-2018 AP3564_10395 b95c82354fc11abd52c4cf341235a7b4 805 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 146 733 1.3E-155 T 13-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AP3564_10395 b95c82354fc11abd52c4cf341235a7b4 805 Gene3D G3DSA:3.30.365.10 455 648 8.5E-129 T 13-10-2018 AP3564_10395 b95c82354fc11abd52c4cf341235a7b4 805 SMART SM01008 19 130 1.1E-46 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AP3564_10395 b95c82354fc11abd52c4cf341235a7b4 805 SUPERFAMILY SSF56003 122 799 1.07E-175 T 13-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 AP3564_10395 b95c82354fc11abd52c4cf341235a7b4 805 SUPERFAMILY SSF54665 4 151 1.24E-46 T 13-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily AP3564_10395 b95c82354fc11abd52c4cf341235a7b4 805 Gene3D G3DSA:3.30.365.10 131 360 5.3E-110 T 13-10-2018 AP3564_10395 b95c82354fc11abd52c4cf341235a7b4 805 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 19 129 6.2E-30 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AP3564_06530 7e46c6948dab07a055784ab1eb9e75a2 157 Pfam PF13798 Protein of unknown function with PCYCGC motif 9 156 1.3E-68 T 13-10-2018 IPR025673 Protein of unknown function with PCYCGC motif AP3564_04800 4989cd74dd14f6b4379b1dea69bbbe31 205 TIGRFAM TIGR02841 spore_YyaC: putative sporulation protein YyaC 43 181 5.3E-68 T 13-10-2018 IPR009665 Protein of unknown function DUF1256 AP3564_04800 4989cd74dd14f6b4379b1dea69bbbe31 205 Pfam PF06866 Protein of unknown function (DUF1256) 18 179 3.5E-64 T 13-10-2018 IPR009665 Protein of unknown function DUF1256 AP3564_04800 4989cd74dd14f6b4379b1dea69bbbe31 205 SUPERFAMILY SSF53163 13 194 4.84E-53 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily AP3564_07395 2c45f1600da9f1e4f325bcafe232c036 145 Gene3D G3DSA:1.10.60.10 74 142 6.0E-29 T 13-10-2018 IPR036421 Iron dependent repressor, metal binding and dimerisation domain superfamily GO:0046914|GO:0046983 AP3564_07395 2c45f1600da9f1e4f325bcafe232c036 145 Pfam PF02742 Iron dependent repressor, metal binding and dimerisation domain 63 124 1.4E-19 T 13-10-2018 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 AP3564_07395 2c45f1600da9f1e4f325bcafe232c036 145 SUPERFAMILY SSF47979 63 125 5.89E-19 T 13-10-2018 IPR036421 Iron dependent repressor, metal binding and dimerisation domain superfamily GO:0046914|GO:0046983 AP3564_07395 2c45f1600da9f1e4f325bcafe232c036 145 Pfam PF01325 Iron dependent repressor, N-terminal DNA binding domain 3 59 5.5E-24 T 13-10-2018 IPR022687 DTXR-type HTH domain GO:0003677 AP3564_07395 2c45f1600da9f1e4f325bcafe232c036 145 SUPERFAMILY SSF46785 3 62 3.37E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_07395 2c45f1600da9f1e4f325bcafe232c036 145 Hamap MF_00732 Transcriptional regulator MntR [mntR]. 1 139 43.995 T 13-10-2018 IPR022897 HTH-type transcription regulator MntR AP3564_07395 2c45f1600da9f1e4f325bcafe232c036 145 SMART SM00529 24 122 1.0E-42 T 13-10-2018 IPR022689 Iron dependent repressor GO:0003700|GO:0006355|GO:0046914 AP3564_07395 2c45f1600da9f1e4f325bcafe232c036 145 Gene3D G3DSA:1.10.10.10 1 73 8.7E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_14790 b82bcc4ab7b3b0d196c1e89b723963a3 154 Pfam PF07301 Protein of unknown function (DUF1453) 5 147 3.3E-61 T 13-10-2018 IPR009916 Protein of unknown function DUF1453 AP3564_14790 b82bcc4ab7b3b0d196c1e89b723963a3 154 PIRSF PIRSF021441 1 154 1.8E-69 T 13-10-2018 IPR031306 CcdC protein AP3564_10650 b19156e2fbf1d03238050b43d98d0df1 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 220 1.3E-23 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AP3564_10650 b19156e2fbf1d03238050b43d98d0df1 225 SMART SM00862 144 221 4.5E-23 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AP3564_10650 b19156e2fbf1d03238050b43d98d0df1 225 Gene3D G3DSA:1.10.10.10 124 222 2.9E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_10650 b19156e2fbf1d03238050b43d98d0df1 225 SMART SM00448 2 112 5.0E-46 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_10650 b19156e2fbf1d03238050b43d98d0df1 225 SUPERFAMILY SSF52172 3 171 3.42E-44 T 13-10-2018 IPR011006 CheY-like superfamily AP3564_10650 b19156e2fbf1d03238050b43d98d0df1 225 Gene3D G3DSA:3.40.50.2300 1 123 2.7E-41 T 13-10-2018 AP3564_10650 b19156e2fbf1d03238050b43d98d0df1 225 Pfam PF00072 Response regulator receiver domain 4 113 1.7E-32 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_02665 f4bdf43e46d3e9ea240b947b33f8051e 330 Gene3D G3DSA:3.40.50.970 1 330 4.6E-126 T 13-10-2018 AP3564_02665 f4bdf43e46d3e9ea240b947b33f8051e 330 Pfam PF00676 Dehydrogenase E1 component 22 319 2.6E-94 T 13-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 AP3564_02665 f4bdf43e46d3e9ea240b947b33f8051e 330 SUPERFAMILY SSF52518 11 329 2.6E-100 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold AP3564_18665 ec974004cff62e4219c192a55485c7a6 791 SUPERFAMILY SSF52540 337 733 1.02E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_18665 ec974004cff62e4219c192a55485c7a6 791 Gene3D G3DSA:1.10.10.2220 200 299 5.2E-16 T 13-10-2018 AP3564_18665 ec974004cff62e4219c192a55485c7a6 791 Gene3D G3DSA:3.40.50.300 516 744 1.1E-141 T 13-10-2018 AP3564_18665 ec974004cff62e4219c192a55485c7a6 791 SMART SM00382 357 512 0.0011 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_18665 ec974004cff62e4219c192a55485c7a6 791 Gene3D G3DSA:2.30.30.940 602 681 1.1E-141 T 13-10-2018 AP3564_18665 ec974004cff62e4219c192a55485c7a6 791 Pfam PF13604 AAA domain 344 553 2.8E-52 T 13-10-2018 AP3564_18665 ec974004cff62e4219c192a55485c7a6 791 Gene3D G3DSA:1.10.150.20 89 159 1.4E-5 T 13-10-2018 AP3564_18665 ec974004cff62e4219c192a55485c7a6 791 Hamap MF_01488 ATP-dependent RecD-like DNA helicase [recD2]. 14 762 29.638 T 13-10-2018 IPR006345 DNA helicase, RecD-like GO:0003677|GO:0032508|GO:0043141 AP3564_18665 ec974004cff62e4219c192a55485c7a6 791 Gene3D G3DSA:3.40.50.300 335 750 1.1E-141 T 13-10-2018 AP3564_18665 ec974004cff62e4219c192a55485c7a6 791 TIGRFAM TIGR01448 recD_rel: helicase, RecD/TraA family 18 754 9.9E-257 T 13-10-2018 IPR006345 DNA helicase, RecD-like GO:0003677|GO:0032508|GO:0043141 AP3564_18665 ec974004cff62e4219c192a55485c7a6 791 Pfam PF13538 UvrD-like helicase C-terminal domain 680 728 3.6E-16 T 13-10-2018 IPR027785 UvrD-like helicase C-terminal domain AP3564_18665 ec974004cff62e4219c192a55485c7a6 791 Pfam PF14490 Helix-hairpin-helix containing domain 158 249 4.3E-27 T 13-10-2018 IPR029493 RecD helicase-like helix-hairpin-helix domain AP3564_17555 590423893a5e21857ffaf112e1d14ff8 75 Pfam PF14004 Protein of unknown function (DUF4227) 6 75 8.0E-32 T 13-10-2018 IPR025321 Protein of unknown function DUF4227 AP3564_14955 d12f5557fb73aadec634fc41cd561334 381 Pfam PF05145 Transition state regulatory protein AbrB 33 364 1.2E-80 T 13-10-2018 IPR007820 AbrB family GO:0010468|GO:0016021 AP3564_14955 d12f5557fb73aadec634fc41cd561334 381 PIRSF PIRSF038991 1 373 6.8E-87 T 13-10-2018 IPR007820 AbrB family GO:0010468|GO:0016021 AP3564_14955 d12f5557fb73aadec634fc41cd561334 381 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 203 364 1.6E-35 T 13-10-2018 IPR017516 AbrB duplication AP3564_14955 d12f5557fb73aadec634fc41cd561334 381 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 13 171 3.5E-33 T 13-10-2018 IPR017516 AbrB duplication AP3564_19485 8754aeb3a9c7219b39e814169cdc141c 155 PIRSF PIRSF021377 1 154 1.4E-60 T 13-10-2018 IPR014229 Sporulation protein YtfJ AP3564_19485 8754aeb3a9c7219b39e814169cdc141c 155 TIGRFAM TIGR02874 spore_ytfJ: sporulation protein YtfJ 3 139 4.0E-56 T 13-10-2018 IPR014229 Sporulation protein YtfJ AP3564_19485 8754aeb3a9c7219b39e814169cdc141c 155 Pfam PF09579 Sporulation protein YtfJ (Spore_YtfJ) 31 129 1.6E-27 T 13-10-2018 IPR014229 Sporulation protein YtfJ AP3564_13260 bfac033557b002e30e73511a330cfa10 396 Gene3D G3DSA:1.20.1250.20 7 396 1.2E-92 T 13-10-2018 AP3564_13260 bfac033557b002e30e73511a330cfa10 396 Pfam PF07690 Major Facilitator Superfamily 18 261 1.7E-39 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AP3564_13260 bfac033557b002e30e73511a330cfa10 396 ProSitePatterns PS00217 Sugar transport proteins signature 2. 105 130 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AP3564_13260 bfac033557b002e30e73511a330cfa10 396 SUPERFAMILY SSF103473 7 396 3.53E-84 T 13-10-2018 IPR036259 MFS transporter superfamily AP3564_01305 170f6f18908ea5e3fa33b268851ac2bb 267 Gene3D G3DSA:1.10.3720.10 2 254 1.5E-39 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_01305 170f6f18908ea5e3fa33b268851ac2bb 267 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 78 252 2.2E-15 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AP3564_01305 170f6f18908ea5e3fa33b268851ac2bb 267 SUPERFAMILY SSF161098 3 252 3.55E-49 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_08500 8adf7c44e3750b8eaab53d0e669bf985 452 Pfam PF01609 Transposase DDE domain 225 395 5.3E-9 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_08500 8adf7c44e3750b8eaab53d0e669bf985 452 Pfam PF05598 Transposase domain (DUF772) 49 117 3.0E-5 T 13-10-2018 IPR008490 Transposase InsH, N-terminal AP3564_08500 8adf7c44e3750b8eaab53d0e669bf985 452 SUPERFAMILY SSF53098 220 422 1.21E-8 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_08500 8adf7c44e3750b8eaab53d0e669bf985 452 Pfam PF13808 DDE_Tnp_1-associated 35 119 5.7E-13 T 13-10-2018 IPR032806 H repeat-associated protein, N-terminal AP3564_13565 8adf7c44e3750b8eaab53d0e669bf985 452 Pfam PF01609 Transposase DDE domain 225 395 5.3E-9 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_13565 8adf7c44e3750b8eaab53d0e669bf985 452 Pfam PF05598 Transposase domain (DUF772) 49 117 3.0E-5 T 13-10-2018 IPR008490 Transposase InsH, N-terminal AP3564_13565 8adf7c44e3750b8eaab53d0e669bf985 452 SUPERFAMILY SSF53098 220 422 1.21E-8 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_13565 8adf7c44e3750b8eaab53d0e669bf985 452 Pfam PF13808 DDE_Tnp_1-associated 35 119 5.7E-13 T 13-10-2018 IPR032806 H repeat-associated protein, N-terminal AP3564_14085 8adf7c44e3750b8eaab53d0e669bf985 452 Pfam PF01609 Transposase DDE domain 225 395 5.3E-9 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_14085 8adf7c44e3750b8eaab53d0e669bf985 452 Pfam PF05598 Transposase domain (DUF772) 49 117 3.0E-5 T 13-10-2018 IPR008490 Transposase InsH, N-terminal AP3564_14085 8adf7c44e3750b8eaab53d0e669bf985 452 SUPERFAMILY SSF53098 220 422 1.21E-8 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_14085 8adf7c44e3750b8eaab53d0e669bf985 452 Pfam PF13808 DDE_Tnp_1-associated 35 119 5.7E-13 T 13-10-2018 IPR032806 H repeat-associated protein, N-terminal AP3564_08720 926a0ba2928268973a463e6f3193f8c7 467 SUPERFAMILY SSF103473 34 464 7.98E-84 T 13-10-2018 IPR036259 MFS transporter superfamily AP3564_08720 926a0ba2928268973a463e6f3193f8c7 467 ProSitePatterns PS00217 Sugar transport proteins signature 2. 144 169 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AP3564_08720 926a0ba2928268973a463e6f3193f8c7 467 Pfam PF00083 Sugar (and other) transporter 83 466 5.0E-50 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AP3564_08720 926a0ba2928268973a463e6f3193f8c7 467 Gene3D G3DSA:1.10.286.90 227 254 9.4E-8 T 13-10-2018 AP3564_06840 9c2dc99c63a83bded7c17666512349fb 160 Pfam PF13581 Histidine kinase-like ATPase domain 12 141 5.2E-31 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_06840 9c2dc99c63a83bded7c17666512349fb 160 Hamap MF_00638 Serine-protein kinase RsbW [rsbW]. 2 157 37.914 T 13-10-2018 IPR010193 Serine-protein kinase RsbW GO:0004674|GO:0005524|GO:0006468|GO:0016989|GO:0045892 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 AP3564_06840 9c2dc99c63a83bded7c17666512349fb 160 Gene3D G3DSA:3.30.565.10 5 152 8.7E-27 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_06840 9c2dc99c63a83bded7c17666512349fb 160 SUPERFAMILY SSF55874 31 132 4.45E-16 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_06840 9c2dc99c63a83bded7c17666512349fb 160 TIGRFAM TIGR01924 rsbW_low_gc: anti-sigma B factor 2 153 1.4E-69 T 13-10-2018 IPR010193 Serine-protein kinase RsbW GO:0004674|GO:0005524|GO:0006468|GO:0016989|GO:0045892 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 AP3564_18720 f0103ef9622e89c0696510f77a08dd7c 146 Gene3D G3DSA:3.50.80.10 1 146 3.3E-60 T 13-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily AP3564_18720 f0103ef9622e89c0696510f77a08dd7c 146 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 2 144 2.8E-58 T 13-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 AP3564_18720 f0103ef9622e89c0696510f77a08dd7c 146 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 145 9.7E-64 T 13-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 AP3564_18720 f0103ef9622e89c0696510f77a08dd7c 146 SUPERFAMILY SSF69500 1 144 1.83E-58 T 13-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily AP3564_18720 f0103ef9622e89c0696510f77a08dd7c 146 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 36.056 T 13-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 AP3564_18735 94ee3c94741769ead42a3dce0ade6b18 792 Gene3D G3DSA:3.90.1640.30 60 321 6.3E-96 T 13-10-2018 AP3564_18735 94ee3c94741769ead42a3dce0ade6b18 792 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 33 565 1.2E-183 T 13-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 AP3564_18735 94ee3c94741769ead42a3dce0ade6b18 792 Pfam PF10141 Single-strand DNA-specific exonuclease, C terminal domain 571 774 1.0E-69 T 13-10-2018 IPR018779 Single-stranded-DNA-specific exonuclease RecJ, C-terminal AP3564_18735 94ee3c94741769ead42a3dce0ade6b18 792 Gene3D G3DSA:3.10.310.30 322 447 1.3E-36 T 13-10-2018 AP3564_18735 94ee3c94741769ead42a3dce0ade6b18 792 Pfam PF02272 DHHA1 domain 318 441 7.4E-22 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 AP3564_18735 94ee3c94741769ead42a3dce0ade6b18 792 SUPERFAMILY SSF64182 60 455 3.66E-124 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily AP3564_18735 94ee3c94741769ead42a3dce0ade6b18 792 Pfam PF01368 DHH family 86 228 3.7E-11 T 13-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AP3564_15960 6fd292521ad169648b64ad4f5600093e 318 SUPERFAMILY SSF88713 101 313 4.45E-61 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AP3564_15960 6fd292521ad169648b64ad4f5600093e 318 Pfam PF01522 Polysaccharide deacetylase 136 246 4.3E-32 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 AP3564_15960 6fd292521ad169648b64ad4f5600093e 318 Gene3D G3DSA:3.20.20.370 116 317 1.7E-60 T 13-10-2018 AP3564_15960 6fd292521ad169648b64ad4f5600093e 318 TIGRFAM TIGR02873 spore_ylxY: probable sporulation protein, polysaccharide deacetylase family 46 313 7.5E-138 T 13-10-2018 IPR014228 Sporulation protein, polysaccharide deacetylase, YlxY AP3564_10415 38dc2b6a747f7de6b2ac318cdcce49cf 519 Gene3D G3DSA:3.40.50.12780 1 405 3.4E-108 T 13-10-2018 AP3564_10415 38dc2b6a747f7de6b2ac318cdcce49cf 519 SUPERFAMILY SSF56801 3 506 1.83E-142 T 13-10-2018 AP3564_10415 38dc2b6a747f7de6b2ac318cdcce49cf 519 Pfam PF00501 AMP-binding enzyme 8 412 2.6E-94 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AP3564_10415 38dc2b6a747f7de6b2ac318cdcce49cf 519 Pfam PF13193 AMP-binding enzyme C-terminal domain 421 497 1.2E-19 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AP3564_10415 38dc2b6a747f7de6b2ac318cdcce49cf 519 ProSitePatterns PS00455 Putative AMP-binding domain signature. 160 171 - T 13-10-2018 IPR020845 AMP-binding, conserved site AP3564_10415 38dc2b6a747f7de6b2ac318cdcce49cf 519 Gene3D G3DSA:3.30.300.310 408 509 5.6E-33 T 13-10-2018 AP3564_06815 01748735b50564a15e0727c99d8e011f 277 Gene3D G3DSA:3.30.750.24 149 269 4.5E-38 T 13-10-2018 IPR036513 STAS domain superfamily AP3564_06815 01748735b50564a15e0727c99d8e011f 277 Pfam PF01740 STAS domain 157 256 1.8E-12 T 13-10-2018 IPR002645 STAS domain AP3564_06815 01748735b50564a15e0727c99d8e011f 277 Pfam PF08678 Rsbr N terminal 12 137 1.5E-21 T 13-10-2018 IPR014792 RsbS co-antagonist protein RsbRA N-terminal domain AP3564_06815 01748735b50564a15e0727c99d8e011f 277 Gene3D G3DSA:1.10.490.10 4 137 2.0E-19 T 13-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 AP3564_06815 01748735b50564a15e0727c99d8e011f 277 SUPERFAMILY SSF52091 151 256 6.47E-16 T 13-10-2018 IPR036513 STAS domain superfamily AP3564_06815 01748735b50564a15e0727c99d8e011f 277 ProDom PD936484 POLYPROTEIN GLYCOPROTEIN M G2 TRANSMEMBRANE NONSTRUCTURAL MEMBRANE CONTAINS: PRECURSOR SIGNAL 11 136 5.0E-10 T 13-10-2018 AP3564_07990 4de822037f68beb21283d7377451cf70 460 Gene3D G3DSA:3.20.20.140 53 380 5.7E-193 T 13-10-2018 AP3564_07990 4de822037f68beb21283d7377451cf70 460 SUPERFAMILY SSF51556 53 382 2.99E-112 T 13-10-2018 IPR032466 Metal-dependent hydrolase AP3564_07990 4de822037f68beb21283d7377451cf70 460 Pfam PF01979 Amidohydrolase family 49 434 2.5E-26 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AP3564_07990 4de822037f68beb21283d7377451cf70 460 TIGRFAM TIGR02033 D-hydantoinase: dihydropyrimidinase 4 454 1.8E-203 T 13-10-2018 IPR011778 Hydantoinase/dihydropyrimidinase GO:0005737 Reactome: R-HSA-399956 AP3564_07990 4de822037f68beb21283d7377451cf70 460 Gene3D G3DSA:2.30.40.10 4 452 5.7E-193 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AP3564_07990 4de822037f68beb21283d7377451cf70 460 SUPERFAMILY SSF51338 2 454 1.22E-37 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AP3564_17410 74d3d62b083b1ca54b66d1c2d285b276 173 SUPERFAMILY SSF52833 35 171 4.59E-46 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AP3564_17410 74d3d62b083b1ca54b66d1c2d285b276 173 Gene3D G3DSA:3.40.30.10 29 172 1.8E-48 T 13-10-2018 AP3564_17410 74d3d62b083b1ca54b66d1c2d285b276 173 Pfam PF00578 AhpC/TSA family 37 153 2.0E-36 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AP3564_05295 2126ac9a2f94b64601b05fd310ccc036 293 Pfam PF13145 PPIC-type PPIASE domain 136 261 3.3E-19 T 13-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 AP3564_05295 2126ac9a2f94b64601b05fd310ccc036 293 SUPERFAMILY SSF109998 38 184 1.44E-20 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily AP3564_05295 2126ac9a2f94b64601b05fd310ccc036 293 Gene3D G3DSA:1.10.4030.30 38 272 7.3E-31 T 13-10-2018 AP3564_05295 2126ac9a2f94b64601b05fd310ccc036 293 Gene3D G3DSA:3.10.50.40 156 257 7.3E-31 T 13-10-2018 AP3564_05295 2126ac9a2f94b64601b05fd310ccc036 293 SUPERFAMILY SSF54534 148 246 1.96E-21 T 13-10-2018 AP3564_14725 76e41886b91119febcdf5dbd716c5aeb 421 TIGRFAM TIGR00836 amt: ammonium transporter 9 408 7.2E-123 T 13-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 AP3564_14725 76e41886b91119febcdf5dbd716c5aeb 421 Pfam PF00909 Ammonium Transporter Family 10 408 1.7E-118 T 13-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 AP3564_14725 76e41886b91119febcdf5dbd716c5aeb 421 SUPERFAMILY SSF111352 7 387 6.02E-110 T 13-10-2018 AP3564_14725 76e41886b91119febcdf5dbd716c5aeb 421 ProSitePatterns PS01219 Ammonium transporters signature. 156 181 - T 13-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 AP3564_14725 76e41886b91119febcdf5dbd716c5aeb 421 Gene3D G3DSA:1.10.3430.10 1 420 9.6E-138 T 13-10-2018 IPR029020 Ammonium/urea transporter AP3564_14725 76e41886b91119febcdf5dbd716c5aeb 421 PRINTS PR00342 Rhesus blood group protein signature 163 178 3.2E-7 T 13-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 AP3564_14725 76e41886b91119febcdf5dbd716c5aeb 421 PRINTS PR00342 Rhesus blood group protein signature 48 65 3.2E-7 T 13-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 AP3564_14725 76e41886b91119febcdf5dbd716c5aeb 421 PRINTS PR00342 Rhesus blood group protein signature 200 218 3.2E-7 T 13-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 AP3564_14725 76e41886b91119febcdf5dbd716c5aeb 421 PRINTS PR00342 Rhesus blood group protein signature 265 278 3.2E-7 T 13-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 AP3564_18870 4b67facfff82d4f25623b05f030d679a 96 TIGRFAM TIGR00062 L27: ribosomal protein bL27 9 89 3.2E-39 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_18870 4b67facfff82d4f25623b05f030d679a 96 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 36 77 7.0E-17 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_18870 4b67facfff82d4f25623b05f030d679a 96 SUPERFAMILY SSF110324 10 91 1.74E-31 T 13-10-2018 AP3564_18870 4b67facfff82d4f25623b05f030d679a 96 ProSitePatterns PS00831 Ribosomal protein L27 signature. 42 56 - T 13-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_18870 4b67facfff82d4f25623b05f030d679a 96 PRINTS PR00063 Ribosomal protein L27 signature 12 36 2.7E-38 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_18870 4b67facfff82d4f25623b05f030d679a 96 PRINTS PR00063 Ribosomal protein L27 signature 37 61 2.7E-38 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_18870 4b67facfff82d4f25623b05f030d679a 96 PRINTS PR00063 Ribosomal protein L27 signature 62 86 2.7E-38 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_18870 4b67facfff82d4f25623b05f030d679a 96 Gene3D G3DSA:2.40.50.100 28 93 3.7E-26 T 13-10-2018 AP3564_18870 4b67facfff82d4f25623b05f030d679a 96 Pfam PF01016 Ribosomal L27 protein 10 89 2.4E-33 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_18870 4b67facfff82d4f25623b05f030d679a 96 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 9 92 26.603 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_18375 e5a39afdb0d4d5a7026d9a4520b54ff8 710 Pfam PF07698 7TM receptor with intracellular HD hydrolase 271 471 1.8E-46 T 13-10-2018 IPR011621 Metal-dependent phosphohydrolase, 7TM intracellular domain AP3564_18375 e5a39afdb0d4d5a7026d9a4520b54ff8 710 Pfam PF07697 7TM-HD extracellular 53 264 9.1E-42 T 13-10-2018 IPR011624 Metal-dependent phosphohydrolase, 7TM extracellular domain AP3564_18375 e5a39afdb0d4d5a7026d9a4520b54ff8 710 Gene3D G3DSA:1.10.3210.10 483 687 1.8E-25 T 13-10-2018 AP3564_18375 e5a39afdb0d4d5a7026d9a4520b54ff8 710 TIGRFAM TIGR00277 HDIG: HDIG domain 493 591 2.3E-28 T 13-10-2018 IPR006675 HDIG domain AP3564_18375 e5a39afdb0d4d5a7026d9a4520b54ff8 710 SUPERFAMILY SSF109604 495 692 4.4E-16 T 13-10-2018 AP3564_18375 e5a39afdb0d4d5a7026d9a4520b54ff8 710 Pfam PF01966 HD domain 496 638 2.0E-18 T 13-10-2018 IPR006674 HD domain AP3564_18375 e5a39afdb0d4d5a7026d9a4520b54ff8 710 SMART SM00471 492 648 6.1E-10 T 13-10-2018 IPR003607 HD/PDEase domain AP3564_16335 498e1cd80cbe76b41d78d6002429a3c1 446 Pfam PF00448 SRP54-type protein, GTPase domain 101 297 9.6E-80 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AP3564_16335 498e1cd80cbe76b41d78d6002429a3c1 446 Gene3D G3DSA:3.40.50.300 91 286 6.6E-132 T 13-10-2018 AP3564_16335 498e1cd80cbe76b41d78d6002429a3c1 446 SMART SM00962 101 297 1.3E-124 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AP3564_16335 498e1cd80cbe76b41d78d6002429a3c1 446 Gene3D G3DSA:1.10.260.30 328 444 2.2E-46 T 13-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 AP3564_16335 498e1cd80cbe76b41d78d6002429a3c1 446 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 6 434 36.213 T 13-10-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 AP3564_16335 498e1cd80cbe76b41d78d6002429a3c1 446 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 270 283 - T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AP3564_16335 498e1cd80cbe76b41d78d6002429a3c1 446 SMART SM00382 100 275 2.6E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_16335 498e1cd80cbe76b41d78d6002429a3c1 446 TIGRFAM TIGR00959 ffh: signal recognition particle protein 3 429 1.4E-195 T 13-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 AP3564_16335 498e1cd80cbe76b41d78d6002429a3c1 446 SMART SM00963 2 87 2.5E-35 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AP3564_16335 498e1cd80cbe76b41d78d6002429a3c1 446 Pfam PF02978 Signal peptide binding domain 329 427 3.3E-36 T 13-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 AP3564_16335 498e1cd80cbe76b41d78d6002429a3c1 446 SUPERFAMILY SSF47446 329 430 4.25E-40 T 13-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 AP3564_16335 498e1cd80cbe76b41d78d6002429a3c1 446 Gene3D G3DSA:1.20.120.140 6 307 6.6E-132 T 13-10-2018 AP3564_16335 498e1cd80cbe76b41d78d6002429a3c1 446 Pfam PF02881 SRP54-type protein, helical bundle domain 6 83 5.2E-23 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AP3564_16335 498e1cd80cbe76b41d78d6002429a3c1 446 SUPERFAMILY SSF52540 43 355 1.14E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_19515 2c485aa7cdf68b3aac4d90e8244b71fe 405 SUPERFAMILY SSF52402 174 382 7.94E-51 T 13-10-2018 AP3564_19515 2c485aa7cdf68b3aac4d90e8244b71fe 405 Gene3D G3DSA:3.30.2130.30 1 174 4.6E-65 T 13-10-2018 AP3564_19515 2c485aa7cdf68b3aac4d90e8244b71fe 405 Pfam PF02568 Thiamine biosynthesis protein (ThiI) 175 371 1.7E-68 T 13-10-2018 IPR020536 Thil, AANH domain GO:0004810 KEGG: 00730+2.8.1.4 AP3564_19515 2c485aa7cdf68b3aac4d90e8244b71fe 405 Gene3D G3DSA:3.40.50.620 175 405 1.1E-75 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AP3564_19515 2c485aa7cdf68b3aac4d90e8244b71fe 405 Pfam PF02926 THUMP domain 41 162 1.2E-21 T 13-10-2018 IPR004114 THUMP domain GO:0003723 AP3564_19515 2c485aa7cdf68b3aac4d90e8244b71fe 405 Hamap MF_00021 tRNA sulfurtransferase [thiI]. 1 405 161.886 T 13-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 AP3564_19515 2c485aa7cdf68b3aac4d90e8244b71fe 405 SUPERFAMILY SSF143437 3 173 2.27E-54 T 13-10-2018 AP3564_19515 2c485aa7cdf68b3aac4d90e8244b71fe 405 TIGRFAM TIGR00342 TIGR00342: tRNA sulfurtransferase ThiI 6 372 8.8E-137 T 13-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 AP3564_19515 2c485aa7cdf68b3aac4d90e8244b71fe 405 SMART SM00981 74 165 7.6E-22 T 13-10-2018 IPR004114 THUMP domain GO:0003723 AP3564_18095 d287c7d9ff5ba425a68c92d14a1f38dc 81 ProDom PD059814 YQGY TRANSMEMBRANE MEMBRANE PRECURSOR BH2821 SIGNAL 1 79 3.0E-32 T 13-10-2018 IPR020254 Protein of unknown function DUF2626 AP3564_18095 d287c7d9ff5ba425a68c92d14a1f38dc 81 Pfam PF11117 Protein of unknown function (DUF2626) 1 74 4.2E-38 T 13-10-2018 IPR020254 Protein of unknown function DUF2626 AP3564_13080 d4834ab9a150ef6f682cfbfbf4910e96 292 SUPERFAMILY SSF54719 171 285 1.28E-44 T 13-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AP3564_13080 d4834ab9a150ef6f682cfbfbf4910e96 292 Gene3D G3DSA:2.40.500.20 171 289 5.2E-48 T 13-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AP3564_13080 d4834ab9a150ef6f682cfbfbf4910e96 292 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 247 254 - T 13-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AP3564_13080 d4834ab9a150ef6f682cfbfbf4910e96 292 PRINTS PR01703 Manganese superoxide dismutase signature 94 105 4.4E-21 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AP3564_13080 d4834ab9a150ef6f682cfbfbf4910e96 292 PRINTS PR01703 Manganese superoxide dismutase signature 115 128 4.4E-21 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AP3564_13080 d4834ab9a150ef6f682cfbfbf4910e96 292 PRINTS PR01703 Manganese superoxide dismutase signature 207 215 4.4E-21 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AP3564_13080 d4834ab9a150ef6f682cfbfbf4910e96 292 PRINTS PR01703 Manganese superoxide dismutase signature 245 257 4.4E-21 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AP3564_13080 d4834ab9a150ef6f682cfbfbf4910e96 292 PRINTS PR01703 Manganese superoxide dismutase signature 154 167 4.4E-21 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AP3564_13080 d4834ab9a150ef6f682cfbfbf4910e96 292 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 90 170 1.0E-28 T 13-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AP3564_13080 d4834ab9a150ef6f682cfbfbf4910e96 292 Gene3D G3DSA:1.10.287.990 108 170 5.5E-24 T 13-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AP3564_13080 d4834ab9a150ef6f682cfbfbf4910e96 292 SUPERFAMILY SSF46609 88 176 1.31E-32 T 13-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AP3564_13080 d4834ab9a150ef6f682cfbfbf4910e96 292 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 178 280 7.0E-38 T 13-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AP3564_01655 1b940a32b7043354c95b13e22d2535f4 387 Gene3D G3DSA:3.40.640.10 42 283 1.4E-115 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_01655 1b940a32b7043354c95b13e22d2535f4 387 Pfam PF00155 Aminotransferase class I and II 31 381 4.1E-65 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AP3564_01655 1b940a32b7043354c95b13e22d2535f4 387 SUPERFAMILY SSF53383 3 384 6.95E-105 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_01655 1b940a32b7043354c95b13e22d2535f4 387 Gene3D G3DSA:3.90.1150.10 25 381 1.4E-115 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_05620 3d4bd42a50b1303119cbbd8b59219b68 216 Gene3D G3DSA:1.10.3130.10 1 66 2.6E-26 T 13-10-2018 AP3564_05620 3d4bd42a50b1303119cbbd8b59219b68 216 SUPERFAMILY SSF51161 3 168 2.63E-58 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily AP3564_05620 3d4bd42a50b1303119cbbd8b59219b68 216 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 117 151 3.7E-9 T 13-10-2018 IPR001451 Hexapeptide repeat AP3564_05620 3d4bd42a50b1303119cbbd8b59219b68 216 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 71 108 1.1E-5 T 13-10-2018 IPR001451 Hexapeptide repeat AP3564_05620 3d4bd42a50b1303119cbbd8b59219b68 216 PIRSF PIRSF000441 1 215 7.9E-88 T 13-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 AP3564_05620 3d4bd42a50b1303119cbbd8b59219b68 216 Gene3D G3DSA:2.160.10.10 67 185 1.9E-39 T 13-10-2018 AP3564_05620 3d4bd42a50b1303119cbbd8b59219b68 216 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 126 154 - T 13-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AP3564_05620 3d4bd42a50b1303119cbbd8b59219b68 216 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 6 166 9.2E-81 T 13-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 AP3564_06205 ab49cc87cfc49bf9c6e2ef3184690e88 272 SUPERFAMILY SSF53098 100 266 1.34E-41 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_06205 ab49cc87cfc49bf9c6e2ef3184690e88 272 Gene3D G3DSA:3.30.420.10 103 268 5.0E-17 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AP3564_06205 ab49cc87cfc49bf9c6e2ef3184690e88 272 Pfam PF00665 Integrase core domain 107 221 3.7E-32 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AP3564_06205 ab49cc87cfc49bf9c6e2ef3184690e88 272 Pfam PF13276 HTH-like domain 26 83 2.1E-16 T 13-10-2018 IPR025948 HTH-like domain AP3564_01190 93af6d3d87a662b0d1d65d2d51e8fb99 283 TIGRFAM TIGR02589 cas_Csd2: CRISPR-associated protein Cas7/Csd2, subtype I-C/DVULG 7 270 5.5E-112 T 13-10-2018 IPR013418 CRISPR-associated protein Csd2 AP3564_01190 93af6d3d87a662b0d1d65d2d51e8fb99 283 TIGRFAM TIGR01595 cas_CT1132: CRISPR-associated protein, CT1132 family 4 269 8.7E-80 T 13-10-2018 IPR006482 CRISPR-associated protein Cas7, subtype I-B/I-C AP3564_01190 93af6d3d87a662b0d1d65d2d51e8fb99 283 Pfam PF05107 CRISPR-associated protein Cas7 7 269 3.9E-84 T 13-10-2018 IPR006482 CRISPR-associated protein Cas7, subtype I-B/I-C AP3564_01120 135f0c2bded365f7640d04974276737b 229 Gene3D G3DSA:3.40.50.1980 55 224 3.9E-48 T 13-10-2018 AP3564_01120 135f0c2bded365f7640d04974276737b 229 Pfam PF01497 Periplasmic binding protein 6 201 9.5E-34 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain AP3564_01120 135f0c2bded365f7640d04974276737b 229 SUPERFAMILY SSF53807 6 222 6.67E-46 T 13-10-2018 AP3564_01120 135f0c2bded365f7640d04974276737b 229 Gene3D G3DSA:3.40.50.1980 3 54 5.3E-7 T 13-10-2018 AP3564_02995 5a67bb628cfa54ed93ca398472364ae7 347 Pfam PF14398 YheC/D like ATP-grasp 101 324 4.1E-51 T 13-10-2018 IPR026838 Endospore coat-associated protein YheC/D AP3564_02995 5a67bb628cfa54ed93ca398472364ae7 347 SUPERFAMILY SSF56059 107 318 9.19E-16 T 13-10-2018 AP3564_17080 ef5ae71dd6947b161fe4d97850e942a0 255 PIRSF PIRSF036636 1 255 1.8E-148 T 13-10-2018 IPR012049 Menaquinone:cytochrome c reductase, cytochrome b/c subunit GO:0005506|GO:0009055|GO:0016021|GO:0020037 AP3564_17080 ef5ae71dd6947b161fe4d97850e942a0 255 Gene3D G3DSA:1.20.810.10 13 169 4.8E-27 T 13-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 AP3564_17080 ef5ae71dd6947b161fe4d97850e942a0 255 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 71 160 9.6E-11 T 13-10-2018 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 AP3564_17080 ef5ae71dd6947b161fe4d97850e942a0 255 SUPERFAMILY SSF81648 20 156 7.06E-31 T 13-10-2018 IPR036150 Cytochrome b/b6, C-terminal domain superfamily GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 AP3564_17080 ef5ae71dd6947b161fe4d97850e942a0 255 Gene3D G3DSA:1.10.760.10 182 252 2.7E-14 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AP3564_17080 ef5ae71dd6947b161fe4d97850e942a0 255 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 181 249 1.1E-12 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_17080 ef5ae71dd6947b161fe4d97850e942a0 255 SUPERFAMILY SSF46626 135 252 8.11E-15 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AP3564_05815 19257b7d7cf53cd5648476f0db097cd8 60 Pfam PF00327 Ribosomal protein L30p/L7e 5 55 1.2E-20 T 13-10-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain AP3564_05815 19257b7d7cf53cd5648476f0db097cd8 60 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 6 59 2.0E-27 T 13-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05815 19257b7d7cf53cd5648476f0db097cd8 60 SUPERFAMILY SSF55129 3 59 9.03E-23 T 13-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily AP3564_05815 19257b7d7cf53cd5648476f0db097cd8 60 ProSitePatterns PS00634 Ribosomal protein L30 signature. 23 55 - T 13-10-2018 IPR018038 Ribosomal protein L30, conserved site AP3564_05815 19257b7d7cf53cd5648476f0db097cd8 60 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 2 59 20.911 T 13-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05815 19257b7d7cf53cd5648476f0db097cd8 60 Gene3D G3DSA:3.30.1390.20 1 59 2.0E-29 T 13-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily AP3564_05815 19257b7d7cf53cd5648476f0db097cd8 60 PIRSF PIRSF002211 1 60 6.0E-31 T 13-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_12210 ca7a092b85718fdff403dc0a03110701 169 TIGRFAM TIGR03164 UHCUDC: OHCU decarboxylase 10 161 2.6E-57 T 13-10-2018 IPR017580 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 1 GO:0019428 KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 AP3564_12210 ca7a092b85718fdff403dc0a03110701 169 SUPERFAMILY SSF158694 2 162 1.83E-48 T 13-10-2018 IPR036778 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase superfamily KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 AP3564_12210 ca7a092b85718fdff403dc0a03110701 169 Gene3D G3DSA:1.10.3330.10 1 168 1.7E-58 T 13-10-2018 IPR036778 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase superfamily KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 AP3564_12210 ca7a092b85718fdff403dc0a03110701 169 Pfam PF09349 OHCU decarboxylase 7 159 5.5E-42 T 13-10-2018 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 AP3564_10750 4ce287d0096a5109b23b42efa32f2499 457 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 256 293 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AP3564_10750 4ce287d0096a5109b23b42efa32f2499 457 SUPERFAMILY SSF53383 11 450 3.24E-132 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_10750 4ce287d0096a5109b23b42efa32f2499 457 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 16 448 1.9E-163 T 13-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 AP3564_10750 4ce287d0096a5109b23b42efa32f2499 457 PIRSF PIRSF000521 31 451 1.8E-38 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AP3564_10750 4ce287d0096a5109b23b42efa32f2499 457 Gene3D G3DSA:3.90.1150.10 12 447 6.0E-165 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_10750 4ce287d0096a5109b23b42efa32f2499 457 Gene3D G3DSA:3.40.640.10 66 346 6.0E-165 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_10750 4ce287d0096a5109b23b42efa32f2499 457 Pfam PF00202 Aminotransferase class-III 31 446 3.6E-118 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AP3564_10750 4ce287d0096a5109b23b42efa32f2499 457 Hamap MF_00834 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [bioA]. 4 451 51.764 T 13-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 AP3564_00265 e080f8c43c08a6c1597a631b7622b5f5 79 Gene3D G3DSA:1.20.90.10 1 76 6.3E-20 T 13-10-2018 IPR036444 Phospholipase A2 domain superfamily GO:0004623|GO:0006644|GO:0050482 KEGG: 00564+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AP3564_00265 e080f8c43c08a6c1597a631b7622b5f5 79 SUPERFAMILY SSF48619 4 49 1.71E-12 T 13-10-2018 IPR036444 Phospholipase A2 domain superfamily GO:0004623|GO:0006644|GO:0050482 KEGG: 00564+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AP3564_18410 7120e44cdb3b4ce6b789c91043bc09ad 580 Pfam PF13667 ThiC-associated domain 9 85 1.3E-34 T 13-10-2018 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AP3564_18410 7120e44cdb3b4ce6b789c91043bc09ad 580 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 125 551 99.787 T 13-10-2018 IPR037509 Phosphomethylpyrimidine synthase GO:0009228|GO:0016830 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AP3564_18410 7120e44cdb3b4ce6b789c91043bc09ad 580 Gene3D G3DSA:3.20.20.540 169 482 4.2E-155 T 13-10-2018 IPR038521 ThiC/Bza superfamily KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AP3564_18410 7120e44cdb3b4ce6b789c91043bc09ad 580 Pfam PF01964 Radical SAM ThiC family 126 546 3.7E-206 T 13-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AP3564_18410 7120e44cdb3b4ce6b789c91043bc09ad 580 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 125 549 5.2E-225 T 13-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AP3564_07890 4755a5136a44af6a1074e46bb5492ec4 272 Gene3D G3DSA:1.10.3720.10 72 263 7.9E-28 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_07890 4755a5136a44af6a1074e46bb5492ec4 272 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 264 9.4E-27 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AP3564_07890 4755a5136a44af6a1074e46bb5492ec4 272 SUPERFAMILY SSF161098 71 256 4.58E-34 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_10130 57c31dbd74cba7fb29be3017a8b8eaf7 131 SUPERFAMILY SSF52833 1 127 5.7E-39 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AP3564_10130 57c31dbd74cba7fb29be3017a8b8eaf7 131 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 4 114 1.1E-36 T 13-10-2018 IPR006504 Transcriptional regulator Spx/MgsR AP3564_10130 57c31dbd74cba7fb29be3017a8b8eaf7 131 Pfam PF03960 ArsC family 5 113 5.8E-23 T 13-10-2018 IPR006660 Arsenate reductase-like AP3564_10130 57c31dbd74cba7fb29be3017a8b8eaf7 131 Hamap MF_01132 Regulatory protein Spx [spxA]. 1 131 38.159 T 13-10-2018 IPR023731 Regulatory protein Spx GO:0045892 AP3564_10130 57c31dbd74cba7fb29be3017a8b8eaf7 131 Gene3D G3DSA:3.40.30.10 1 131 4.3E-46 T 13-10-2018 AP3564_15330 f59a17bc3cfec0d5f6336d4b45cf2aea 150 SUPERFAMILY SSF53697 19 108 2.84E-16 T 13-10-2018 AP3564_15330 f59a17bc3cfec0d5f6336d4b45cf2aea 150 Gene3D G3DSA:3.40.50.10490 2 127 2.4E-26 T 13-10-2018 AP3564_15330 f59a17bc3cfec0d5f6336d4b45cf2aea 150 Pfam PF01380 SIS domain 36 108 4.3E-7 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AP3564_14905 f9be5846eeab2648bdee0af6dfd72631 210 SMART SM00421 146 203 1.1E-29 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_14905 f9be5846eeab2648bdee0af6dfd72631 210 Pfam PF00072 Response regulator receiver domain 4 115 1.5E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_14905 f9be5846eeab2648bdee0af6dfd72631 210 SUPERFAMILY SSF46894 141 209 1.9E-25 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AP3564_14905 f9be5846eeab2648bdee0af6dfd72631 210 SUPERFAMILY SSF52172 1 132 4.13E-35 T 13-10-2018 IPR011006 CheY-like superfamily AP3564_14905 f9be5846eeab2648bdee0af6dfd72631 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 3.4E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_14905 f9be5846eeab2648bdee0af6dfd72631 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 3.4E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_14905 f9be5846eeab2648bdee0af6dfd72631 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 3.4E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_14905 f9be5846eeab2648bdee0af6dfd72631 210 Gene3D G3DSA:3.40.50.12740 2 209 6.6E-80 T 13-10-2018 AP3564_14905 f9be5846eeab2648bdee0af6dfd72631 210 SMART SM00448 2 115 2.6E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_14905 f9be5846eeab2648bdee0af6dfd72631 210 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_14905 f9be5846eeab2648bdee0af6dfd72631 210 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 203 3.1E-24 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_04765 0510da0de01b27c665f1fc585a8f7ec9 658 Gene3D G3DSA:3.90.1640.10 322 536 8.4E-53 T 13-10-2018 AP3564_04765 0510da0de01b27c665f1fc585a8f7ec9 658 Gene3D G3DSA:3.10.310.30 537 655 5.1E-11 T 13-10-2018 AP3564_04765 0510da0de01b27c665f1fc585a8f7ec9 658 Gene3D G3DSA:3.30.450.20 51 161 6.0E-32 T 13-10-2018 AP3564_04765 0510da0de01b27c665f1fc585a8f7ec9 658 SMART SM00267 132 299 2.2E-10 T 13-10-2018 IPR000160 GGDEF domain AP3564_04765 0510da0de01b27c665f1fc585a8f7ec9 658 Pfam PF02272 DHHA1 domain 518 648 5.3E-14 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 AP3564_04765 0510da0de01b27c665f1fc585a8f7ec9 658 PIRSF PIRSF026583 1 658 3.8E-262 T 13-10-2018 IPR014528 Cyclic-di-AMP phosphodiesterase GdpP/PdeA AP3564_04765 0510da0de01b27c665f1fc585a8f7ec9 658 Pfam PF01368 DHH family 339 496 1.7E-22 T 13-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AP3564_04765 0510da0de01b27c665f1fc585a8f7ec9 658 SUPERFAMILY SSF64182 338 641 3.92E-69 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily AP3564_04540 21b19488e281a890d5065bec4c2311d8 303 SUPERFAMILY SSF53850 90 293 7.19E-38 T 13-10-2018 AP3564_04540 21b19488e281a890d5065bec4c2311d8 303 Pfam PF03466 LysR substrate binding domain 90 291 4.0E-42 T 13-10-2018 IPR005119 LysR, substrate-binding AP3564_04540 21b19488e281a890d5065bec4c2311d8 303 Gene3D G3DSA:3.40.190.290 93 299 1.8E-56 T 13-10-2018 AP3564_04540 21b19488e281a890d5065bec4c2311d8 303 SUPERFAMILY SSF46785 2 83 1.11E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_04540 21b19488e281a890d5065bec4c2311d8 303 Gene3D G3DSA:1.10.10.10 1 92 8.1E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_04540 21b19488e281a890d5065bec4c2311d8 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 8.8E-20 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_04540 21b19488e281a890d5065bec4c2311d8 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.0E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_04540 21b19488e281a890d5065bec4c2311d8 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.0E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_04540 21b19488e281a890d5065bec4c2311d8 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.0E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_17350 d05876411b05b520a69cc6ad1c622299 353 Pfam PF14493 Helix-turn-helix domain 258 346 1.8E-24 T 13-10-2018 IPR029491 Helicase Helix-turn-helix domain Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 AP3564_17350 d05876411b05b520a69cc6ad1c622299 353 PIRSF PIRSF021350 4 353 9.4E-94 T 13-10-2018 IPR008308 Uncharacterised conserved protein UCP021350 AP3564_17980 294edcd1513738bd2c4944a626c443d0 588 Gene3D G3DSA:1.20.1640.10 472 587 3.8E-11 T 13-10-2018 AP3564_17980 294edcd1513738bd2c4944a626c443d0 588 Pfam PF03176 MMPL family 303 583 5.6E-16 T 13-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 AP3564_17980 294edcd1513738bd2c4944a626c443d0 588 SUPERFAMILY SSF82866 454 584 1.44E-22 T 13-10-2018 AP3564_17980 294edcd1513738bd2c4944a626c443d0 588 PRINTS PR00702 Acriflavin resistance protein family signature 497 520 4.1E-5 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AP3564_17980 294edcd1513738bd2c4944a626c443d0 588 PRINTS PR00702 Acriflavin resistance protein family signature 552 576 4.1E-5 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AP3564_17980 294edcd1513738bd2c4944a626c443d0 588 PRINTS PR00702 Acriflavin resistance protein family signature 524 545 4.1E-5 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AP3564_08520 1a67c4448c779c89f723c3ea54222953 269 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 10 256 4.4E-80 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 AP3564_08520 1a67c4448c779c89f723c3ea54222953 269 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 7 261 18.114 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 AP3564_08520 1a67c4448c779c89f723c3ea54222953 269 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 136 148 - T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 AP3564_08520 1a67c4448c779c89f723c3ea54222953 269 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 2 263 7.1E-86 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 AP3564_18675 9e63950d328523824dcb462678163781 371 Gene3D G3DSA:2.40.30.10 279 370 6.5E-31 T 13-10-2018 AP3564_18675 9e63950d328523824dcb462678163781 371 Gene3D G3DSA:3.40.50.620 1 213 5.5E-101 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AP3564_18675 9e63950d328523824dcb462678163781 371 Gene3D G3DSA:2.30.30.280 214 278 8.9E-25 T 13-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 AP3564_18675 9e63950d328523824dcb462678163781 371 Pfam PF03054 tRNA methyl transferase 9 357 2.5E-151 T 13-10-2018 AP3564_18675 9e63950d328523824dcb462678163781 371 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 9 357 1.2E-144 T 13-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 AP3564_18675 9e63950d328523824dcb462678163781 371 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 8 358 41.434 T 13-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 AP3564_18675 9e63950d328523824dcb462678163781 371 SUPERFAMILY SSF52402 8 244 7.28E-60 T 13-10-2018 AP3564_13720 1d4c38f79ddefaa446ab96870c2aa0bc 554 Gene3D G3DSA:3.20.20.80 10 106 2.6E-36 T 13-10-2018 AP3564_13720 1d4c38f79ddefaa446ab96870c2aa0bc 554 SMART SM00642 13 415 1.4E-170 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AP3564_13720 1d4c38f79ddefaa446ab96870c2aa0bc 554 SUPERFAMILY SSF51445 3 473 2.97E-164 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily AP3564_13720 1d4c38f79ddefaa446ab96870c2aa0bc 554 PRINTS PR00110 Alpha-amylase signature 92 103 1.1E-5 T 13-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 AP3564_13720 1d4c38f79ddefaa446ab96870c2aa0bc 554 PRINTS PR00110 Alpha-amylase signature 193 204 1.1E-5 T 13-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 AP3564_13720 1d4c38f79ddefaa446ab96870c2aa0bc 554 PRINTS PR00110 Alpha-amylase signature 316 328 1.1E-5 T 13-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 AP3564_13720 1d4c38f79ddefaa446ab96870c2aa0bc 554 Pfam PF16657 Maltogenic Amylase, C-terminal domain 476 549 2.8E-7 T 13-10-2018 IPR032091 Maltogenic Amylase, C-terminal AP3564_13720 1d4c38f79ddefaa446ab96870c2aa0bc 554 Gene3D G3DSA:3.90.400.10 107 168 2.9E-35 T 13-10-2018 AP3564_13720 1d4c38f79ddefaa446ab96870c2aa0bc 554 Gene3D G3DSA:2.60.40.1180 477 554 9.3E-24 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta AP3564_13720 1d4c38f79ddefaa446ab96870c2aa0bc 554 Pfam PF00128 Alpha amylase, catalytic domain 28 373 1.7E-119 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AP3564_13720 1d4c38f79ddefaa446ab96870c2aa0bc 554 Gene3D G3DSA:3.20.20.80 169 476 1.8E-131 T 13-10-2018 AP3564_13720 1d4c38f79ddefaa446ab96870c2aa0bc 554 SUPERFAMILY SSF51011 476 553 4.27E-17 T 13-10-2018 AP3564_19390 55bc438d63d4d840d0e5473399df7a3f 324 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 5 147 1.7E-66 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AP3564_19390 55bc438d63d4d840d0e5473399df7a3f 324 Gene3D G3DSA:3.90.226.10 3 316 1.4E-125 T 13-10-2018 AP3564_19390 55bc438d63d4d840d0e5473399df7a3f 324 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 112 130 1.5E-46 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AP3564_19390 55bc438d63d4d840d0e5473399df7a3f 324 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 133 149 1.5E-46 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AP3564_19390 55bc438d63d4d840d0e5473399df7a3f 324 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 87 98 1.5E-46 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AP3564_19390 55bc438d63d4d840d0e5473399df7a3f 324 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 152 165 1.5E-46 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AP3564_19390 55bc438d63d4d840d0e5473399df7a3f 324 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 196 205 1.5E-46 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AP3564_19390 55bc438d63d4d840d0e5473399df7a3f 324 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 168 181 1.5E-46 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AP3564_19390 55bc438d63d4d840d0e5473399df7a3f 324 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 4 315 50.208 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AP3564_19390 55bc438d63d4d840d0e5473399df7a3f 324 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 4 318 6.3E-160 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AP3564_19390 55bc438d63d4d840d0e5473399df7a3f 324 SUPERFAMILY SSF52096 6 313 4.53E-103 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AP3564_11645 11265cb44a1c75225a605724ab706671 164 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 79 158 2.2E-29 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AP3564_11645 11265cb44a1c75225a605724ab706671 164 Gene3D G3DSA:1.10.10.10 76 161 1.3E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_11645 11265cb44a1c75225a605724ab706671 164 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 2 73 2.9E-6 T 13-10-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 AP3564_11645 11265cb44a1c75225a605724ab706671 164 SUPERFAMILY SSF53155 4 82 4.71E-16 T 13-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 AP3564_11645 11265cb44a1c75225a605724ab706671 164 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 6 158 39.838 T 13-10-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 AP3564_11645 11265cb44a1c75225a605724ab706671 164 Gene3D G3DSA:3.30.160.70 1 72 5.8E-14 T 13-10-2018 AP3564_11645 11265cb44a1c75225a605724ab706671 164 SUPERFAMILY SSF46767 76 158 3.4E-29 T 13-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 AP3564_11645 11265cb44a1c75225a605724ab706671 164 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 127 133 - T 13-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 AP3564_11645 11265cb44a1c75225a605724ab706671 164 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 77 157 2.7E-34 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AP3564_07430 ad32b0e008c04ed5c6c4f13229e1b852 195 TIGRFAM TIGR02228 sigpep_I_arch: signal peptidase I 6 168 1.8E-49 T 13-10-2018 IPR001733 Peptidase S26B GO:0006465|GO:0008233|GO:0016020 AP3564_07430 ad32b0e008c04ed5c6c4f13229e1b852 195 PRINTS PR00728 Eukaryotic signal peptidase (S26B) family signature 47 62 5.6E-7 T 13-10-2018 IPR001733 Peptidase S26B GO:0006465|GO:0008233|GO:0016020 AP3564_07430 ad32b0e008c04ed5c6c4f13229e1b852 195 PRINTS PR00728 Eukaryotic signal peptidase (S26B) family signature 105 116 5.6E-7 T 13-10-2018 IPR001733 Peptidase S26B GO:0006465|GO:0008233|GO:0016020 AP3564_07430 ad32b0e008c04ed5c6c4f13229e1b852 195 Pfam PF00717 Peptidase S24-like 47 107 1.4E-9 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AP3564_07430 ad32b0e008c04ed5c6c4f13229e1b852 195 SUPERFAMILY SSF51306 39 112 2.09E-9 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily AP3564_07430 ad32b0e008c04ed5c6c4f13229e1b852 195 Gene3D G3DSA:2.10.109.10 49 145 2.9E-5 T 13-10-2018 AP3564_16755 d271a6e32561de5c3394d2faedc8efef 57 SUPERFAMILY SSF57829 1 55 6.1E-24 T 13-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 AP3564_16755 d271a6e32561de5c3394d2faedc8efef 57 Pfam PF01783 Ribosomal L32p protein family 2 57 8.3E-29 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_16755 d271a6e32561de5c3394d2faedc8efef 57 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 55 20.874 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_16755 d271a6e32561de5c3394d2faedc8efef 57 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 56 5.6E-30 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_01560 1c17eaf7cf6c8d3d1483943bd849271e 791 Gene3D G3DSA:1.10.287.950 267 382 8.1E-7 T 13-10-2018 AP3564_01560 1c17eaf7cf6c8d3d1483943bd849271e 791 Gene3D G3DSA:1.10.287.950 443 594 2.9E-7 T 13-10-2018 AP3564_01560 1c17eaf7cf6c8d3d1483943bd849271e 791 SUPERFAMILY SSF58104 166 372 7.32E-8 T 13-10-2018 AP3564_01560 1c17eaf7cf6c8d3d1483943bd849271e 791 TIGRFAM TIGR03062 pip_yhgE_Cterm: YhgE/Pip C-terminal domain 580 783 3.6E-68 T 13-10-2018 IPR017501 Phage infection protein, YhgE, C-terminal AP3564_01560 1c17eaf7cf6c8d3d1483943bd849271e 791 TIGRFAM TIGR03061 pip_yhgE_Nterm: YhgE/Pip N-terminal domain 10 172 2.7E-61 T 13-10-2018 IPR017500 Phage infection protein, YhgE, N-terminal AP3564_01560 1c17eaf7cf6c8d3d1483943bd849271e 791 SUPERFAMILY SSF58104 380 563 3.4E-6 T 13-10-2018 AP3564_01560 1c17eaf7cf6c8d3d1483943bd849271e 791 TIGRFAM TIGR03057 xxxLxxG_by_4: X-X-X-Leu-X-X-Gly heptad repeats 499 526 2.4E-6 T 13-10-2018 IPR023908 xxxLxxG heptad repeat AP3564_01560 1c17eaf7cf6c8d3d1483943bd849271e 791 TIGRFAM TIGR03057 xxxLxxG_by_4: X-X-X-Leu-X-X-Gly heptad repeats 472 498 3.1E-5 T 13-10-2018 IPR023908 xxxLxxG heptad repeat AP3564_01560 1c17eaf7cf6c8d3d1483943bd849271e 791 TIGRFAM TIGR03057 xxxLxxG_by_4: X-X-X-Leu-X-X-Gly heptad repeats 422 449 3.3E-4 T 13-10-2018 IPR023908 xxxLxxG heptad repeat AP3564_01560 1c17eaf7cf6c8d3d1483943bd849271e 791 TIGRFAM TIGR03057 xxxLxxG_by_4: X-X-X-Leu-X-X-Gly heptad repeats 415 442 5.3E-5 T 13-10-2018 IPR023908 xxxLxxG heptad repeat AP3564_01560 1c17eaf7cf6c8d3d1483943bd849271e 791 TIGRFAM TIGR03057 xxxLxxG_by_4: X-X-X-Leu-X-X-Gly heptad repeats 536 560 6.8E-5 T 13-10-2018 IPR023908 xxxLxxG heptad repeat AP3564_01560 1c17eaf7cf6c8d3d1483943bd849271e 791 TIGRFAM TIGR03057 xxxLxxG_by_4: X-X-X-Leu-X-X-Gly heptad repeats 394 421 1.6E-6 T 13-10-2018 IPR023908 xxxLxxG heptad repeat AP3564_01560 1c17eaf7cf6c8d3d1483943bd849271e 791 Pfam PF12698 ABC-2 family transporter protein 561 776 8.6E-15 T 13-10-2018 AP3564_01560 1c17eaf7cf6c8d3d1483943bd849271e 791 Pfam PF12698 ABC-2 family transporter protein 25 159 7.5E-11 T 13-10-2018 AP3564_03165 2da224a61e4c743d795188be1a26ffbe 346 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 24 33 - T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AP3564_03165 2da224a61e4c743d795188be1a26ffbe 346 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 142 158 - T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AP3564_03165 2da224a61e4c743d795188be1a26ffbe 346 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 8 343 2.6E-124 T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AP3564_03165 2da224a61e4c743d795188be1a26ffbe 346 SUPERFAMILY SSF51726 6 345 3.66E-105 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 AP3564_03165 2da224a61e4c743d795188be1a26ffbe 346 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 10 341 1.4E-129 T 13-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AP3564_03165 2da224a61e4c743d795188be1a26ffbe 346 Gene3D G3DSA:3.20.20.210 1 346 8.0E-149 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 AP3564_03165 2da224a61e4c743d795188be1a26ffbe 346 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 8 344 47.605 T 13-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AP3564_07850 86b173520e99a9c9e07e41c76e2c1e7b 479 Gene3D G3DSA:3.40.605.10 22 469 3.7E-178 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AP3564_07850 86b173520e99a9c9e07e41c76e2c1e7b 479 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 278 289 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AP3564_07850 86b173520e99a9c9e07e41c76e2c1e7b 479 Pfam PF00171 Aldehyde dehydrogenase family 21 474 6.8E-172 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AP3564_07850 86b173520e99a9c9e07e41c76e2c1e7b 479 PIRSF PIRSF036492 28 477 7.9E-86 T 13-10-2018 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0006081|GO:0055114 AP3564_07850 86b173520e99a9c9e07e41c76e2c1e7b 479 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 250 257 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AP3564_07850 86b173520e99a9c9e07e41c76e2c1e7b 479 SUPERFAMILY SSF53720 5 477 2.09E-170 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AP3564_07850 86b173520e99a9c9e07e41c76e2c1e7b 479 Gene3D G3DSA:3.40.309.10 256 445 3.7E-178 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AP3564_07850 86b173520e99a9c9e07e41c76e2c1e7b 479 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 25 472 1.6E-197 T 13-10-2018 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 AP3564_18480 b3d8bd8007f9cd9a3d8cbd7b00e856e8 381 Gene3D G3DSA:3.80.30.20 2 300 6.1E-108 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe AP3564_18480 b3d8bd8007f9cd9a3d8cbd7b00e856e8 381 Pfam PF04055 Radical SAM superfamily 7 177 7.6E-25 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AP3564_18480 b3d8bd8007f9cd9a3d8cbd7b00e856e8 381 SUPERFAMILY SSF102114 5 379 3.92E-119 T 13-10-2018 AP3564_18480 b3d8bd8007f9cd9a3d8cbd7b00e856e8 381 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 4 368 1.2E-135 T 13-10-2018 IPR004559 Oxygen-independent coproporphyrinogen III oxidase-like GO:0004109|GO:0005737|GO:0006779|GO:0055114 AP3564_18480 b3d8bd8007f9cd9a3d8cbd7b00e856e8 381 Pfam PF06969 HemN C-terminal domain 303 368 2.2E-17 T 13-10-2018 IPR010723 HemN, C-terminal AP3564_18480 b3d8bd8007f9cd9a3d8cbd7b00e856e8 381 SMART SM00729 2 223 4.0E-60 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AP3564_09155 118b4b733c765392d30fd3c2fba151af 59 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 1 51 1.6E-11 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AP3564_09155 118b4b733c765392d30fd3c2fba151af 59 Gene3D G3DSA:1.10.260.40 1 56 7.0E-8 T 13-10-2018 AP3564_09155 118b4b733c765392d30fd3c2fba151af 59 SUPERFAMILY SSF47413 1 53 7.7E-9 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AP3564_11405 7b8eaddcd84534de3979dd41e46b0f91 187 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 3.6E-8 T 13-10-2018 AP3564_11405 7b8eaddcd84534de3979dd41e46b0f91 187 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 97 115 3.6E-8 T 13-10-2018 AP3564_11405 7b8eaddcd84534de3979dd41e46b0f91 187 Gene3D G3DSA:3.50.50.60 1 177 6.4E-48 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_11405 7b8eaddcd84534de3979dd41e46b0f91 187 Pfam PF00890 FAD binding domain 3 35 8.4E-7 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 AP3564_11405 7b8eaddcd84534de3979dd41e46b0f91 187 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 42 159 1.5E-10 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AP3564_11405 7b8eaddcd84534de3979dd41e46b0f91 187 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 98 106 1.4E-12 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_11405 7b8eaddcd84534de3979dd41e46b0f91 187 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 53 63 1.4E-12 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_11405 7b8eaddcd84534de3979dd41e46b0f91 187 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 3 25 1.4E-12 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_11405 7b8eaddcd84534de3979dd41e46b0f91 187 SUPERFAMILY SSF51905 1 174 6.03E-32 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_00765 6f4e5f530297b4592b4365b8a23c727f 346 Gene3D G3DSA:3.30.1330.10 1 167 5.3E-71 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AP3564_00765 6f4e5f530297b4592b4365b8a23c727f 346 Pfam PF00586 AIR synthase related protein, N-terminal domain 63 161 4.5E-18 T 13-10-2018 IPR016188 PurM-like, N-terminal domain AP3564_00765 6f4e5f530297b4592b4365b8a23c727f 346 SUPERFAMILY SSF55326 3 166 2.24E-52 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AP3564_00765 6f4e5f530297b4592b4365b8a23c727f 346 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 3 343 47.977 T 13-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AP3564_00765 6f4e5f530297b4592b4365b8a23c727f 346 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 4 334 3.2E-142 T 13-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AP3564_00765 6f4e5f530297b4592b4365b8a23c727f 346 SUPERFAMILY SSF56042 168 339 3.74E-58 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AP3564_00765 6f4e5f530297b4592b4365b8a23c727f 346 Gene3D G3DSA:3.90.650.10 168 344 2.5E-71 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AP3564_00765 6f4e5f530297b4592b4365b8a23c727f 346 Pfam PF02769 AIR synthase related protein, C-terminal domain 173 339 2.4E-34 T 13-10-2018 IPR010918 PurM-like, C-terminal domain AP3564_06680 450ba243c26544d2280b37151a614251 373 SUPERFAMILY SSF52540 5 244 1.4E-86 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_06680 450ba243c26544d2280b37151a614251 373 Gene3D G3DSA:2.40.50.940 223 348 3.9E-25 T 13-10-2018 AP3564_06680 450ba243c26544d2280b37151a614251 373 Gene3D G3DSA:2.40.50.140 284 339 3.9E-25 T 13-10-2018 AP3564_06680 450ba243c26544d2280b37151a614251 373 SMART SM00382 29 212 9.2E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_06680 450ba243c26544d2280b37151a614251 373 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_06680 450ba243c26544d2280b37151a614251 373 Gene3D G3DSA:3.40.50.300 4 222 9.1E-68 T 13-10-2018 AP3564_06680 450ba243c26544d2280b37151a614251 373 SUPERFAMILY SSF50331 237 355 2.43E-23 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AP3564_06680 450ba243c26544d2280b37151a614251 373 Pfam PF00005 ABC transporter 21 162 2.2E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_10950 6794a653db039be1d8c7afb0212e0ec6 134 Pfam PF01610 Transposase 1 120 1.6E-37 T 13-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain AP3564_17505 3ee7ce7d8b58053f8a8e86e3537a4714 140 Pfam PF13782 Stage V sporulation protein AB 27 135 7.3E-36 T 13-10-2018 IPR020144 Stage V sporulation protein AB AP3564_17505 3ee7ce7d8b58053f8a8e86e3537a4714 140 ProDom PD086170 SPORULATION AB V STAGE MEMBRANE SPOVAB TRANSMEMBRANE 7 137 3.0E-46 T 13-10-2018 IPR020144 Stage V sporulation protein AB AP3564_05210 c3c28121d20a18f0a37a60a2ec40a213 535 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 360 502 1.0E-28 T 13-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain AP3564_05210 c3c28121d20a18f0a37a60a2ec40a213 535 Pfam PF01943 Polysaccharide biosynthesis protein 10 309 5.2E-40 T 13-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 AP3564_05210 c3c28121d20a18f0a37a60a2ec40a213 535 PIRSF PIRSF038958 4 522 4.1E-79 T 13-10-2018 IPR024923 Peptidoglycan biosynthesis protein, SpoVB-type AP3564_06265 dfbd53d8fe1e115ae8bbef4d1a9e182b 423 Gene3D G3DSA:3.30.465.40 5 203 8.7E-55 T 13-10-2018 AP3564_06265 dfbd53d8fe1e115ae8bbef4d1a9e182b 423 SUPERFAMILY SSF56176 17 191 1.8E-49 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AP3564_06265 dfbd53d8fe1e115ae8bbef4d1a9e182b 423 Pfam PF01565 FAD binding domain 17 154 6.2E-34 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AP3564_06265 dfbd53d8fe1e115ae8bbef4d1a9e182b 423 SUPERFAMILY SSF55103 204 420 3.14E-18 T 13-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AP3564_10585 f94842e9c85749fc3a6799800373ee0f 471 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 20 37 - T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AP3564_10585 f94842e9c85749fc3a6799800373ee0f 471 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 29 111 2.2E-21 T 13-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AP3564_10585 f94842e9c85749fc3a6799800373ee0f 471 TIGRFAM TIGR01992 PTS-IIBC-Tre: PTS system, trehalose-specific IIBC component 6 464 3.3E-204 T 13-10-2018 IPR011296 Phosphotransferase system, trehalose-specific IIBC component GO:0015574|GO:0015771|GO:0016021 KEGG: 00500+2.7.1.201 AP3564_10585 f94842e9c85749fc3a6799800373ee0f 471 Pfam PF02378 Phosphotransferase system, EIIC 112 408 8.1E-43 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AP3564_10585 f94842e9c85749fc3a6799800373ee0f 471 Pfam PF00367 phosphotransferase system, EIIB 10 42 4.7E-15 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AP3564_10585 f94842e9c85749fc3a6799800373ee0f 471 SUPERFAMILY SSF55604 8 83 3.14E-21 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 AP3564_10585 f94842e9c85749fc3a6799800373ee0f 471 Gene3D G3DSA:3.30.1360.60 2 79 1.6E-26 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 AP3564_19520 042008260de1ad1523ba4f2a03ea51ed 382 Gene3D G3DSA:3.40.640.10 13 256 1.4E-133 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_19520 042008260de1ad1523ba4f2a03ea51ed 382 SUPERFAMILY SSF53383 1 374 6.32E-103 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_19520 042008260de1ad1523ba4f2a03ea51ed 382 Gene3D G3DSA:3.90.1150.10 3 371 1.4E-133 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_19520 042008260de1ad1523ba4f2a03ea51ed 382 Pfam PF00266 Aminotransferase class-V 3 364 6.9E-80 T 13-10-2018 IPR000192 Aminotransferase class V domain AP3564_19520 042008260de1ad1523ba4f2a03ea51ed 382 PIRSF PIRSF005572 1 380 5.3E-116 T 13-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 AP3564_12475 9a6e14aaeef87cd5d6f5d292e5484f31 377 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 34 376 2.4E-36 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AP3564_12475 9a6e14aaeef87cd5d6f5d292e5484f31 377 Gene3D G3DSA:1.10.287.470 93 182 3.5E-45 T 13-10-2018 AP3564_12475 9a6e14aaeef87cd5d6f5d292e5484f31 377 Gene3D G3DSA:2.40.50.100 58 217 3.5E-45 T 13-10-2018 AP3564_12475 9a6e14aaeef87cd5d6f5d292e5484f31 377 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 71 91 1.0E-5 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AP3564_12475 9a6e14aaeef87cd5d6f5d292e5484f31 377 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 363 377 1.0E-5 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AP3564_12475 9a6e14aaeef87cd5d6f5d292e5484f31 377 Gene3D G3DSA:2.40.420.20 43 361 3.5E-45 T 13-10-2018 AP3564_12475 9a6e14aaeef87cd5d6f5d292e5484f31 377 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 48 257 2.3E-13 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AP3564_12475 9a6e14aaeef87cd5d6f5d292e5484f31 377 Gene3D G3DSA:2.40.30.170 47 304 3.5E-45 T 13-10-2018 AP3564_11505 63eaf61cdb0192b19b9d53d8be8dd6b2 881 Hamap MF_01871 UPF0753 protein . 25 867 23.953 T 13-10-2018 IPR018752 Uncharacterised protein family UPF0753 AP3564_11505 63eaf61cdb0192b19b9d53d8be8dd6b2 881 Pfam PF10070 Uncharacterized protein conserved in bacteria (DUF2309) 30 852 9.6E-264 T 13-10-2018 IPR018752 Uncharacterised protein family UPF0753 AP3564_05300 5c5caa8d1632b2840d7b93c595d7f99d 309 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 34 52 - T 13-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 AP3564_05300 5c5caa8d1632b2840d7b93c595d7f99d 309 Gene3D G3DSA:3.40.50.1100 46 144 1.7E-125 T 13-10-2018 AP3564_05300 5c5caa8d1632b2840d7b93c595d7f99d 309 SUPERFAMILY SSF53686 4 305 5.11E-107 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AP3564_05300 5c5caa8d1632b2840d7b93c595d7f99d 309 TIGRFAM TIGR01136 cysKM: cysteine synthase 9 304 6.9E-136 T 13-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 AP3564_05300 5c5caa8d1632b2840d7b93c595d7f99d 309 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 10 292 2.8E-73 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AP3564_05300 5c5caa8d1632b2840d7b93c595d7f99d 309 Gene3D G3DSA:3.40.50.1100 7 300 1.7E-125 T 13-10-2018 AP3564_05300 5c5caa8d1632b2840d7b93c595d7f99d 309 TIGRFAM TIGR01139 cysK: cysteine synthase A 9 304 5.4E-144 T 13-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 AP3564_17860 6de95a32e32eb923643fe6c3a6fa4d35 133 Pfam PF03780 Asp23 family, cell envelope-related function 15 119 2.3E-37 T 13-10-2018 IPR005531 Alkaline shock protein Asp23 AP3564_08775 98b07a3bf9069c770f0efce4a618c3eb 394 SUPERFAMILY SSF53748 1 393 2.0E-167 T 13-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_08775 98b07a3bf9069c770f0efce4a618c3eb 394 Gene3D G3DSA:3.40.50.1260 7 391 3.8E-170 T 13-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_08775 98b07a3bf9069c770f0efce4a618c3eb 394 Pfam PF00162 Phosphoglycerate kinase 6 383 4.9E-169 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_08775 98b07a3bf9069c770f0efce4a618c3eb 394 Gene3D G3DSA:3.40.50.1260 169 383 3.8E-170 T 13-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_08775 98b07a3bf9069c770f0efce4a618c3eb 394 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 8 393 43.902 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_08775 98b07a3bf9069c770f0efce4a618c3eb 394 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 15 25 - T 13-10-2018 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_08775 98b07a3bf9069c770f0efce4a618c3eb 394 PRINTS PR00477 Phosphoglycerate kinase family signature 312 337 1.0E-99 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_08775 98b07a3bf9069c770f0efce4a618c3eb 394 PRINTS PR00477 Phosphoglycerate kinase family signature 137 159 1.0E-99 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_08775 98b07a3bf9069c770f0efce4a618c3eb 394 PRINTS PR00477 Phosphoglycerate kinase family signature 369 386 1.0E-99 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_08775 98b07a3bf9069c770f0efce4a618c3eb 394 PRINTS PR00477 Phosphoglycerate kinase family signature 167 189 1.0E-99 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_08775 98b07a3bf9069c770f0efce4a618c3eb 394 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 1.0E-99 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_08775 98b07a3bf9069c770f0efce4a618c3eb 394 PRINTS PR00477 Phosphoglycerate kinase family signature 346 357 1.0E-99 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_08775 98b07a3bf9069c770f0efce4a618c3eb 394 PRINTS PR00477 Phosphoglycerate kinase family signature 109 124 1.0E-99 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_08775 98b07a3bf9069c770f0efce4a618c3eb 394 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 1.0E-99 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_08775 98b07a3bf9069c770f0efce4a618c3eb 394 PRINTS PR00477 Phosphoglycerate kinase family signature 190 209 1.0E-99 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_08775 98b07a3bf9069c770f0efce4a618c3eb 394 PIRSF PIRSF000724 1 394 7.2E-163 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AP3564_02135 b37c841c8a44af2b19e9b8282294f49a 276 Pfam PF08874 Domain of unknown function (DUF1835) 2 124 5.3E-34 T 13-10-2018 IPR014973 Protein of unknown function DUF1835 AP3564_02135 b37c841c8a44af2b19e9b8282294f49a 276 Pfam PF12395 Protein of unknown function 160 271 3.5E-36 T 13-10-2018 IPR022123 Protein of unknown function DUF3658 AP3564_12820 5b12ce47b259ec081f78501535719f08 171 Gene3D G3DSA:1.10.3760.10 2 170 1.9E-74 T 13-10-2018 AP3564_12820 5b12ce47b259ec081f78501535719f08 171 Pfam PF04608 Phosphatidylglycerophosphatase A 16 157 1.0E-19 T 13-10-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 AP3564_12820 5b12ce47b259ec081f78501535719f08 171 PIRSF PIRSF019587 3 166 2.4E-72 T 13-10-2018 IPR026038 Putative phosphatidylglycerophosphatase AP3564_12820 5b12ce47b259ec081f78501535719f08 171 SUPERFAMILY SSF101307 11 159 8.76E-51 T 13-10-2018 IPR036681 PgpA-like superfamily GO:0006629|GO:0008962 AP3564_05115 dbcdcae018296ce962cf3f451623780b 292 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 20 288 55.503 T 13-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 AP3564_05115 dbcdcae018296ce962cf3f451623780b 292 Gene3D G3DSA:3.40.50.150 1 216 1.8E-73 T 13-10-2018 AP3564_05115 dbcdcae018296ce962cf3f451623780b 292 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 52 79 - T 13-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 AP3564_05115 dbcdcae018296ce962cf3f451623780b 292 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 20 286 1.2E-84 T 13-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 AP3564_05115 dbcdcae018296ce962cf3f451623780b 292 SMART SM00650 36 212 4.4E-79 T 13-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 AP3564_05115 dbcdcae018296ce962cf3f451623780b 292 Gene3D G3DSA:1.10.8.100 220 290 1.2E-20 T 13-10-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 AP3564_05115 dbcdcae018296ce962cf3f451623780b 292 SUPERFAMILY SSF53335 18 289 1.76E-72 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_05115 dbcdcae018296ce962cf3f451623780b 292 Pfam PF00398 Ribosomal RNA adenine dimethylase 20 280 1.7E-76 T 13-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm AP3564_13450 d835421390c0987fb9cf19dda2d4372f 315 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 270 283 6.1E-7 T 13-10-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 AP3564_13450 d835421390c0987fb9cf19dda2d4372f 315 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 109 119 6.1E-7 T 13-10-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 AP3564_13450 d835421390c0987fb9cf19dda2d4372f 315 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 257 269 6.1E-7 T 13-10-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 AP3564_13450 d835421390c0987fb9cf19dda2d4372f 315 SUPERFAMILY SSF51430 1 313 1.1E-105 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AP3564_13450 d835421390c0987fb9cf19dda2d4372f 315 Pfam PF00248 Aldo/keto reductase family 15 314 8.7E-86 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain AP3564_13450 d835421390c0987fb9cf19dda2d4372f 315 Gene3D G3DSA:3.20.20.100 1 315 2.8E-123 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AP3564_09195 fea2c01488fdf253dca1e0e1f7f2590d 46 Pfam PF08181 DegQ (SacQ) family 3 45 1.5E-13 T 13-10-2018 IPR012554 Degradation enzyme regulation protein DegQ GO:1900192 AP3564_09195 fea2c01488fdf253dca1e0e1f7f2590d 46 ProDom PD014716 DEGQ ENZYME DEGRADATION SACQ REGULATORY REGULATION FACTOR 1 42 1.0E-4 T 13-10-2018 IPR012554 Degradation enzyme regulation protein DegQ GO:1900192 AP3564_05170 b14269be9dc41e24219bad48b68aa405 185 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 1 178 38.9 T 13-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AP3564_05170 b14269be9dc41e24219bad48b68aa405 185 Gene3D G3DSA:3.40.50.1470 1 185 1.9E-75 T 13-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 AP3564_05170 b14269be9dc41e24219bad48b68aa405 185 Pfam PF01195 Peptidyl-tRNA hydrolase 3 185 3.1E-62 T 13-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AP3564_05170 b14269be9dc41e24219bad48b68aa405 185 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 14 27 - T 13-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 AP3564_05170 b14269be9dc41e24219bad48b68aa405 185 SUPERFAMILY SSF53178 1 185 6.41E-72 T 13-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 AP3564_05170 b14269be9dc41e24219bad48b68aa405 185 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 1 185 2.3E-73 T 13-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AP3564_05170 b14269be9dc41e24219bad48b68aa405 185 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 107 117 - T 13-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 AP3564_05515 543c0fb4889e15c75db808c23f5a5943 200 Pfam PF05137 Fimbrial assembly protein (PilN) 96 157 1.2E-7 T 13-10-2018 IPR007813 Fimbrial assembly PilN AP3564_09460 d9f845bbb72b22b5f9e1d2b51517934c 248 TIGRFAM TIGR02890 bacill_yteA: regulatory protein, yteA family 5 164 1.3E-47 T 13-10-2018 IPR014240 Regulatory protein, YteA family AP3564_09460 d9f845bbb72b22b5f9e1d2b51517934c 248 SUPERFAMILY SSF57716 90 118 3.14E-5 T 13-10-2018 AP3564_09460 d9f845bbb72b22b5f9e1d2b51517934c 248 SUPERFAMILY SSF109635 1 89 7.06E-13 T 13-10-2018 IPR037187 DksA, N-terminal domain superfamily AP3564_09460 d9f845bbb72b22b5f9e1d2b51517934c 248 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 88 116 1.5E-9 T 13-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 AP3564_09460 d9f845bbb72b22b5f9e1d2b51517934c 248 Gene3D G3DSA:1.20.120.910 1 126 2.6E-28 T 13-10-2018 AP3564_07075 646de5c472a836f6ccf1a16707e60b89 241 SMART SM00382 26 206 5.8E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_07075 646de5c472a836f6ccf1a16707e60b89 241 Gene3D G3DSA:3.40.50.300 1 232 8.6E-61 T 13-10-2018 AP3564_07075 646de5c472a836f6ccf1a16707e60b89 241 SUPERFAMILY SSF52540 2 217 8.04E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_07075 646de5c472a836f6ccf1a16707e60b89 241 Pfam PF00005 ABC transporter 17 158 4.6E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_07075 646de5c472a836f6ccf1a16707e60b89 241 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_13680 59c6085371f8e4604a81004023725d95 146 Pfam PF02600 Disulfide bond formation protein DsbB 15 131 2.1E-11 T 13-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 AP3564_13680 59c6085371f8e4604a81004023725d95 146 Hamap MF_00287 Probable disulfide formation protein [bdbC]. 5 141 23.223 T 13-10-2018 IPR012187 Disulphide bond formation protein BdbC AP3564_13680 59c6085371f8e4604a81004023725d95 146 PIRSF PIRSF036659 2 144 2.0E-54 T 13-10-2018 IPR012187 Disulphide bond formation protein BdbC AP3564_13680 59c6085371f8e4604a81004023725d95 146 Gene3D G3DSA:1.20.1550.10 2 115 7.4E-10 T 13-10-2018 IPR023380 DsbB-like superfamily AP3564_13680 59c6085371f8e4604a81004023725d95 146 SUPERFAMILY SSF158442 14 136 4.97E-30 T 13-10-2018 IPR023380 DsbB-like superfamily AP3564_15240 18d909ccdef31d767159fea387c4b06c 151 SUPERFAMILY SSF81593 20 140 9.02E-31 T 13-10-2018 AP3564_15240 18d909ccdef31d767159fea387c4b06c 151 Gene3D G3DSA:1.20.120.330 24 144 5.8E-26 T 13-10-2018 AP3564_15240 18d909ccdef31d767159fea387c4b06c 151 TIGRFAM TIGR01987 HI0074: nucleotidyltransferase substrate binding protein, HI0074 family 38 141 1.3E-17 T 13-10-2018 IPR010235 Nucleotidyltransferase substrate binding protein, HI0074 AP3564_15240 18d909ccdef31d767159fea387c4b06c 151 Pfam PF08780 Nucleotidyltransferase substrate binding protein like 25 142 4.0E-22 T 13-10-2018 IPR010235 Nucleotidyltransferase substrate binding protein, HI0074 AP3564_18915 f5ef459f47124ffea06dbdfafac57bdd 267 Gene3D G3DSA:3.40.50.300 1 253 2.3E-70 T 13-10-2018 AP3564_18915 f5ef459f47124ffea06dbdfafac57bdd 267 Pfam PF13614 AAA domain 4 159 2.4E-25 T 13-10-2018 IPR025669 AAA domain AP3564_18915 f5ef459f47124ffea06dbdfafac57bdd 267 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 3 263 1.3E-125 T 13-10-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 AP3564_18915 f5ef459f47124ffea06dbdfafac57bdd 267 PIRSF PIRSF003092 1 267 1.5E-96 T 13-10-2018 IPR025501 ATP binding protein MinD AP3564_18915 f5ef459f47124ffea06dbdfafac57bdd 267 SUPERFAMILY SSF52540 3 262 7.02E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_11450 0e08669459caa04764f9a8c5163b08cc 327 Hamap MF_00024 Cobalamin biosynthesis protein CbiB [cbiB]. 1 324 91.113 T 13-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 AP3564_11450 0e08669459caa04764f9a8c5163b08cc 327 Pfam PF03186 CobD/Cbib protein 9 296 1.4E-99 T 13-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 AP3564_11450 0e08669459caa04764f9a8c5163b08cc 327 TIGRFAM TIGR00380 cobD: cobalamin biosynthesis protein CobD 4 294 2.3E-71 T 13-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 AP3564_03050 fe5b63b18e7d19a277fcae829b3b9b4e 409 Pfam PF00480 ROK family 87 398 2.2E-68 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 AP3564_03050 fe5b63b18e7d19a277fcae829b3b9b4e 409 Pfam PF13412 Winged helix-turn-helix DNA-binding 21 61 3.3E-9 T 13-10-2018 AP3564_03050 fe5b63b18e7d19a277fcae829b3b9b4e 409 Gene3D G3DSA:1.10.10.10 15 80 8.2E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_03050 fe5b63b18e7d19a277fcae829b3b9b4e 409 SUPERFAMILY SSF46785 12 77 5.92E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_03050 fe5b63b18e7d19a277fcae829b3b9b4e 409 Gene3D G3DSA:3.30.420.40 209 383 2.4E-93 T 13-10-2018 AP3564_03050 fe5b63b18e7d19a277fcae829b3b9b4e 409 Gene3D G3DSA:3.30.420.40 94 392 2.4E-93 T 13-10-2018 AP3564_03050 fe5b63b18e7d19a277fcae829b3b9b4e 409 ProSitePatterns PS01125 ROK family signature. 219 246 - T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 AP3564_03050 fe5b63b18e7d19a277fcae829b3b9b4e 409 SUPERFAMILY SSF53067 85 399 1.83E-58 T 13-10-2018 AP3564_08800 7f5ae9dd841555620c05e28b8a804766 77 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 2 75 1.5E-22 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AP3564_08800 7f5ae9dd841555620c05e28b8a804766 77 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 6.9E-14 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AP3564_08800 7f5ae9dd841555620c05e28b8a804766 77 PRINTS PR01651 Protein-export SecG membrane protein signature 56 77 6.9E-14 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AP3564_08800 7f5ae9dd841555620c05e28b8a804766 77 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 6.9E-14 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AP3564_08800 7f5ae9dd841555620c05e28b8a804766 77 Pfam PF03840 Preprotein translocase SecG subunit 4 74 1.3E-21 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AP3564_17570 3272833245498a7c0fc43a4a98e4a03e 389 Pfam PF13263 PHP-associated 195 244 6.2E-8 T 13-10-2018 AP3564_17570 3272833245498a7c0fc43a4a98e4a03e 389 Gene3D G3DSA:3.20.20.140 2 251 2.5E-15 T 13-10-2018 AP3564_17570 3272833245498a7c0fc43a4a98e4a03e 389 TIGRFAM TIGR00375 TIGR00375: TIGR00375 family protein 25 386 3.6E-100 T 13-10-2018 IPR005287 Conserved hypothetical protein CHP00375 AP3564_17570 3272833245498a7c0fc43a4a98e4a03e 389 SUPERFAMILY SSF47781 307 368 7.41E-7 T 13-10-2018 IPR010994 RuvA domain 2-like AP3564_17570 3272833245498a7c0fc43a4a98e4a03e 389 SUPERFAMILY SSF89550 3 244 5.3E-15 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 AP3564_16680 d53c58ef1460973c5847bdea57fdcb65 366 TIGRFAM TIGR02615 spoVE: stage V sporulation protein E 9 362 8.7E-178 T 13-10-2018 IPR013438 Sporulation stage V, protein E AP3564_16680 d53c58ef1460973c5847bdea57fdcb65 366 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 9 363 6.2E-133 T 13-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AP3564_16680 d53c58ef1460973c5847bdea57fdcb65 366 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 9 362 3.9E-102 T 13-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AP3564_16680 d53c58ef1460973c5847bdea57fdcb65 366 Pfam PF01098 Cell cycle protein 12 365 1.3E-129 T 13-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AP3564_16680 d53c58ef1460973c5847bdea57fdcb65 366 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 322 346 - T 13-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AP3564_09530 06b0c6f747e27c42508b7b3cd01dfd60 259 Pfam PF00005 ABC transporter 23 162 7.3E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_09530 06b0c6f747e27c42508b7b3cd01dfd60 259 SMART SM00382 32 213 3.0E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_09530 06b0c6f747e27c42508b7b3cd01dfd60 259 SUPERFAMILY SSF52540 4 222 2.48E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_09530 06b0c6f747e27c42508b7b3cd01dfd60 259 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_09530 06b0c6f747e27c42508b7b3cd01dfd60 259 Gene3D G3DSA:3.40.50.300 3 242 5.5E-60 T 13-10-2018 AP3564_13840 09a464be1913e81a02ea3c6dce0a1fcf 341 Pfam PF13377 Periplasmic binding protein-like domain 175 336 1.8E-41 T 13-10-2018 AP3564_13840 09a464be1913e81a02ea3c6dce0a1fcf 341 SMART SM00354 2 72 2.9E-29 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AP3564_13840 09a464be1913e81a02ea3c6dce0a1fcf 341 Gene3D G3DSA:3.40.50.2300 167 330 2.3E-90 T 13-10-2018 AP3564_13840 09a464be1913e81a02ea3c6dce0a1fcf 341 SUPERFAMILY SSF47413 2 60 1.69E-18 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AP3564_13840 09a464be1913e81a02ea3c6dce0a1fcf 341 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 49 2.1E-20 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AP3564_13840 09a464be1913e81a02ea3c6dce0a1fcf 341 Gene3D G3DSA:1.10.260.40 1 58 2.3E-24 T 13-10-2018 AP3564_13840 09a464be1913e81a02ea3c6dce0a1fcf 341 SUPERFAMILY SSF53822 62 337 1.99E-84 T 13-10-2018 IPR028082 Periplasmic binding protein-like I AP3564_13840 09a464be1913e81a02ea3c6dce0a1fcf 341 Gene3D G3DSA:3.40.50.2300 76 328 2.3E-90 T 13-10-2018 AP3564_09660 16cbe803f58612ac41b5129fe34936ff 537 Pfam PF01943 Polysaccharide biosynthesis protein 5 318 3.5E-56 T 13-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 AP3564_09660 16cbe803f58612ac41b5129fe34936ff 537 PIRSF PIRSF038958 1 534 9.1E-136 T 13-10-2018 IPR024923 Peptidoglycan biosynthesis protein, SpoVB-type AP3564_09660 16cbe803f58612ac41b5129fe34936ff 537 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 371 515 3.6E-26 T 13-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain AP3564_15620 63b8778a40156e799e670515ffdc4331 238 SMART SM00863 189 232 2.1E-11 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 AP3564_15620 63b8778a40156e799e670515ffdc4331 238 Gene3D G3DSA:3.30.980.10 87 237 2.4E-40 T 13-10-2018 AP3564_15620 63b8778a40156e799e670515ffdc4331 238 SUPERFAMILY SSF55186 90 235 1.22E-39 T 13-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 AP3564_15620 63b8778a40156e799e670515ffdc4331 238 Gene3D G3DSA:2.40.30.130 1 84 8.2E-27 T 13-10-2018 AP3564_15620 63b8778a40156e799e670515ffdc4331 238 Pfam PF01411 tRNA synthetases class II (A) 12 88 2.8E-16 T 13-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 AP3564_15620 63b8778a40156e799e670515ffdc4331 238 SUPERFAMILY SSF50447 1 75 1.13E-17 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AP3564_15620 63b8778a40156e799e670515ffdc4331 238 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 189 232 1.5E-11 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 AP3564_12355 17a3bceebf8a285d55e90545ee931e73 504 Gene3D G3DSA:3.40.50.300 4 247 7.0E-58 T 13-10-2018 AP3564_12355 17a3bceebf8a285d55e90545ee931e73 504 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 498 178.289 T 13-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 AP3564_12355 17a3bceebf8a285d55e90545ee931e73 504 SUPERFAMILY SSF52317 258 452 1.15E-36 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AP3564_12355 17a3bceebf8a285d55e90545ee931e73 504 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 7 233 7.4E-22 T 13-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain AP3564_12355 17a3bceebf8a285d55e90545ee931e73 504 SUPERFAMILY SSF52540 7 240 3.14E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_12355 17a3bceebf8a285d55e90545ee931e73 504 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 257 444 5.9E-53 T 13-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 AP3564_12355 17a3bceebf8a285d55e90545ee931e73 504 Gene3D G3DSA:3.40.50.880 255 436 5.2E-21 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AP3564_12355 17a3bceebf8a285d55e90545ee931e73 504 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 7 491 5.6E-174 T 13-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 AP3564_14995 9cbff7d219dcd93fe939023070ddab12 98 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 40 96 5.4E-9 T 13-10-2018 IPR002751 Metal transport protein CbiM/NikMN GO:0000041|GO:0016021 AP3564_14995 9cbff7d219dcd93fe939023070ddab12 98 Gene3D G3DSA:1.10.1760.20 39 97 1.7E-10 T 13-10-2018 AP3564_06190 101dab806590d04c6b3bf19a38d4e674 282 Pfam PF00106 short chain dehydrogenase 11 219 5.6E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_06190 101dab806590d04c6b3bf19a38d4e674 282 SUPERFAMILY SSF51735 9 278 9.93E-69 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_06190 101dab806590d04c6b3bf19a38d4e674 282 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 165 193 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AP3564_06190 101dab806590d04c6b3bf19a38d4e674 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 3.0E-30 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_06190 101dab806590d04c6b3bf19a38d4e674 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 197 3.0E-30 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_06190 101dab806590d04c6b3bf19a38d4e674 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 199 216 3.0E-30 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_06190 101dab806590d04c6b3bf19a38d4e674 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 239 259 3.0E-30 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_06190 101dab806590d04c6b3bf19a38d4e674 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 3.0E-30 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_06190 101dab806590d04c6b3bf19a38d4e674 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 168 3.0E-30 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_06190 101dab806590d04c6b3bf19a38d4e674 282 Gene3D G3DSA:3.40.50.720 3 282 9.8E-75 T 13-10-2018 AP3564_06190 101dab806590d04c6b3bf19a38d4e674 282 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 166 4.1E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_06190 101dab806590d04c6b3bf19a38d4e674 282 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 178 197 4.1E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_06190 101dab806590d04c6b3bf19a38d4e674 282 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 4.1E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_19060 f310d790b2e6e04fca60ae5663c84fe1 370 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 4 352 2.3E-138 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AP3564_19060 f310d790b2e6e04fca60ae5663c84fe1 370 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 243 262 - T 13-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 AP3564_19060 f310d790b2e6e04fca60ae5663c84fe1 370 SMART SM01329 4 352 1.3E-196 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AP3564_19060 f310d790b2e6e04fca60ae5663c84fe1 370 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 3 356 49.119 T 13-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 AP3564_19060 f310d790b2e6e04fca60ae5663c84fe1 370 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 4 352 1.0E-160 T 13-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 AP3564_19060 f310d790b2e6e04fca60ae5663c84fe1 370 Gene3D G3DSA:3.40.718.10 1 365 5.9E-155 T 13-10-2018 AP3564_19060 f310d790b2e6e04fca60ae5663c84fe1 370 SUPERFAMILY SSF53659 1 356 1.63E-123 T 13-10-2018 AP3564_10380 667ab08bfc187110cea3dcf4915b7818 339 Pfam PF13394 4Fe-4S single cluster domain 22 113 3.4E-8 T 13-10-2018 AP3564_10380 667ab08bfc187110cea3dcf4915b7818 339 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 21 32 - T 13-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AP3564_10380 667ab08bfc187110cea3dcf4915b7818 339 Pfam PF06463 Molybdenum Cofactor Synthesis C 191 317 2.4E-39 T 13-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AP3564_10380 667ab08bfc187110cea3dcf4915b7818 339 SMART SM00729 15 223 3.3E-11 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AP3564_10380 667ab08bfc187110cea3dcf4915b7818 339 SUPERFAMILY SSF102114 7 286 6.15E-83 T 13-10-2018 AP3564_10380 667ab08bfc187110cea3dcf4915b7818 339 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 6 339 40.866 T 13-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AP3564_10380 667ab08bfc187110cea3dcf4915b7818 339 Pfam PF04055 Radical SAM superfamily 19 179 1.2E-30 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AP3564_10380 667ab08bfc187110cea3dcf4915b7818 339 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 7 339 5.1E-120 T 13-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AP3564_10380 667ab08bfc187110cea3dcf4915b7818 339 Gene3D G3DSA:3.20.20.70 3 339 7.0E-111 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_10805 edf390560fc59f7ff133edda98e40153 438 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 77 88 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AP3564_10805 edf390560fc59f7ff133edda98e40153 438 Pfam PF13183 4Fe-4S dicluster domain 22 91 8.3E-13 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AP3564_10805 edf390560fc59f7ff133edda98e40153 438 SUPERFAMILY SSF46548 15 105 1.38E-19 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AP3564_10805 edf390560fc59f7ff133edda98e40153 438 Gene3D G3DSA:1.10.1060.10 1 112 4.9E-9 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AP3564_10805 edf390560fc59f7ff133edda98e40153 438 Pfam PF02754 Cysteine-rich domain 328 413 1.4E-18 T 13-10-2018 IPR004017 Cysteine-rich domain AP3564_10805 edf390560fc59f7ff133edda98e40153 438 Pfam PF02754 Cysteine-rich domain 197 279 4.3E-20 T 13-10-2018 IPR004017 Cysteine-rich domain AP3564_10805 edf390560fc59f7ff133edda98e40153 438 PIRSF PIRSF000139 5 438 4.6E-146 T 13-10-2018 AP3564_09045 c4eca75927bfac5885ea44daf50bb406 160 Pfam PF04608 Phosphatidylglycerophosphatase A 17 153 2.7E-20 T 13-10-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 AP3564_09045 c4eca75927bfac5885ea44daf50bb406 160 PIRSF PIRSF019587 1 160 3.5E-80 T 13-10-2018 IPR026038 Putative phosphatidylglycerophosphatase AP3564_09045 c4eca75927bfac5885ea44daf50bb406 160 SUPERFAMILY SSF101307 6 156 7.59E-57 T 13-10-2018 IPR036681 PgpA-like superfamily GO:0006629|GO:0008962 AP3564_09045 c4eca75927bfac5885ea44daf50bb406 160 Gene3D G3DSA:1.10.3760.10 1 160 5.1E-77 T 13-10-2018 AP3564_02790 69bf04baa28a7e8adecac4c677651c6a 388 TIGRFAM TIGR02877 spore_yhbH: sporulation protein YhbH 9 380 2.8E-181 T 13-10-2018 IPR014230 Sporulation protein YhbH AP3564_02790 69bf04baa28a7e8adecac4c677651c6a 388 Pfam PF04285 Protein of unknown function (DUF444) 16 184 5.4E-32 T 13-10-2018 IPR006698 Uncharacterised protein family UPF0229 AP3564_02790 69bf04baa28a7e8adecac4c677651c6a 388 Pfam PF04285 Protein of unknown function (DUF444) 193 383 5.9E-69 T 13-10-2018 IPR006698 Uncharacterised protein family UPF0229 AP3564_02790 69bf04baa28a7e8adecac4c677651c6a 388 SUPERFAMILY SSF53300 216 328 8.9E-5 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AP3564_01290 ea6a724511eaac52fa257337a73fb784 180 Pfam PF07883 Cupin domain 124 167 7.7E-9 T 13-10-2018 IPR013096 Cupin 2, conserved barrel AP3564_01290 ea6a724511eaac52fa257337a73fb784 180 Pfam PF01381 Helix-turn-helix 7 60 1.5E-15 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AP3564_01290 ea6a724511eaac52fa257337a73fb784 180 Gene3D G3DSA:1.10.260.40 1 68 4.5E-21 T 13-10-2018 AP3564_01290 ea6a724511eaac52fa257337a73fb784 180 SMART SM00530 6 61 1.8E-15 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AP3564_01290 ea6a724511eaac52fa257337a73fb784 180 Gene3D G3DSA:2.60.120.10 69 175 6.5E-17 T 13-10-2018 IPR014710 RmlC-like jelly roll fold AP3564_01290 ea6a724511eaac52fa257337a73fb784 180 SUPERFAMILY SSF51182 54 176 1.4E-22 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily AP3564_01290 ea6a724511eaac52fa257337a73fb784 180 SUPERFAMILY SSF47413 1 67 3.1E-19 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AP3564_02365 40982682c518930ba2509ab3b0f9e20f 175 SUPERFAMILY SSF159234 3 171 2.09E-31 T 13-10-2018 IPR035930 FomD-like superfamily AP3564_02365 40982682c518930ba2509ab3b0f9e20f 175 Gene3D G3DSA:2.40.380.10 23 170 1.1E-9 T 13-10-2018 IPR035930 FomD-like superfamily AP3564_02365 40982682c518930ba2509ab3b0f9e20f 175 PIRSF PIRSF028345 1 175 9.6E-79 T 13-10-2018 IPR016882 Uncharacterised protein family UPF0374 AP3564_02365 40982682c518930ba2509ab3b0f9e20f 175 Hamap MF_01568 UPF0374 protein . 1 175 50.67 T 13-10-2018 IPR016882 Uncharacterised protein family UPF0374 AP3564_02365 40982682c518930ba2509ab3b0f9e20f 175 Pfam PF04167 Protein of unknown function (DUF402) 60 124 1.4E-17 T 13-10-2018 IPR007295 Domain of unknown function DUF402 AP3564_16310 50758c81ebc6199135f2be5ac30b1a1d 173 Gene3D G3DSA:2.40.30.60 6 93 3.2E-22 T 13-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 AP3564_16310 50758c81ebc6199135f2be5ac30b1a1d 173 SUPERFAMILY SSF50346 100 170 1.96E-20 T 13-10-2018 IPR011033 PRC-barrel-like superfamily AP3564_16310 50758c81ebc6199135f2be5ac30b1a1d 173 SUPERFAMILY SSF50447 4 92 7.18E-23 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AP3564_16310 50758c81ebc6199135f2be5ac30b1a1d 173 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 5 170 25.322 T 13-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 AP3564_16310 50758c81ebc6199135f2be5ac30b1a1d 173 Gene3D G3DSA:2.30.30.240 95 173 3.4E-22 T 13-10-2018 AP3564_16310 50758c81ebc6199135f2be5ac30b1a1d 173 Pfam PF01782 RimM N-terminal domain 7 91 1.1E-24 T 13-10-2018 IPR002676 RimM, N-terminal GO:0006364 AP3564_16310 50758c81ebc6199135f2be5ac30b1a1d 173 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 5 169 3.3E-54 T 13-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 AP3564_16310 50758c81ebc6199135f2be5ac30b1a1d 173 Pfam PF05239 PRC-barrel domain 97 171 2.7E-15 T 13-10-2018 IPR027275 PRC-barrel domain AP3564_05825 f86c5712e0e2b9eaeaac88ac18ea9595 430 PRINTS PR00303 Preprotein translocase SecY subunit signature 146 171 2.7E-101 T 13-10-2018 AP3564_05825 f86c5712e0e2b9eaeaac88ac18ea9595 430 PRINTS PR00303 Preprotein translocase SecY subunit signature 269 288 2.7E-101 T 13-10-2018 AP3564_05825 f86c5712e0e2b9eaeaac88ac18ea9595 430 PRINTS PR00303 Preprotein translocase SecY subunit signature 364 382 2.7E-101 T 13-10-2018 AP3564_05825 f86c5712e0e2b9eaeaac88ac18ea9595 430 PRINTS PR00303 Preprotein translocase SecY subunit signature 172 195 2.7E-101 T 13-10-2018 AP3564_05825 f86c5712e0e2b9eaeaac88ac18ea9595 430 PRINTS PR00303 Preprotein translocase SecY subunit signature 309 331 2.7E-101 T 13-10-2018 AP3564_05825 f86c5712e0e2b9eaeaac88ac18ea9595 430 PRINTS PR00303 Preprotein translocase SecY subunit signature 398 416 2.7E-101 T 13-10-2018 AP3564_05825 f86c5712e0e2b9eaeaac88ac18ea9595 430 PRINTS PR00303 Preprotein translocase SecY subunit signature 18 36 2.7E-101 T 13-10-2018 AP3564_05825 f86c5712e0e2b9eaeaac88ac18ea9595 430 PRINTS PR00303 Preprotein translocase SecY subunit signature 67 87 2.7E-101 T 13-10-2018 AP3564_05825 f86c5712e0e2b9eaeaac88ac18ea9595 430 PRINTS PR00303 Preprotein translocase SecY subunit signature 109 132 2.7E-101 T 13-10-2018 AP3564_05825 f86c5712e0e2b9eaeaac88ac18ea9595 430 Pfam PF00344 SecY translocase 68 413 1.5E-115 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AP3564_05825 f86c5712e0e2b9eaeaac88ac18ea9595 430 Hamap MF_01465 Protein translocase subunit SecY [secY]. 5 429 29.614 T 13-10-2018 IPR026593 Protein translocase subunit SecY AP3564_05825 f86c5712e0e2b9eaeaac88ac18ea9595 430 Gene3D G3DSA:1.10.3370.10 1 425 2.3E-162 T 13-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AP3564_05825 f86c5712e0e2b9eaeaac88ac18ea9595 430 PIRSF PIRSF004557 1 430 1.6E-131 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AP3564_05825 f86c5712e0e2b9eaeaac88ac18ea9595 430 SUPERFAMILY SSF103491 1 420 1.03E-131 T 13-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AP3564_05825 f86c5712e0e2b9eaeaac88ac18ea9595 430 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 15 425 3.4E-151 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AP3564_05825 f86c5712e0e2b9eaeaac88ac18ea9595 430 ProSitePatterns PS00755 Protein secY signature 1. 68 87 - T 13-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AP3564_05825 f86c5712e0e2b9eaeaac88ac18ea9595 430 ProSitePatterns PS00756 Protein secY signature 2. 165 182 - T 13-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AP3564_01905 ca28fdcd3be9c08af2534214ae396836 538 TIGRFAM TIGR02005 PTS-IIBC-alpha: PTS system, alpha-glucoside-specific IIBC component 2 527 1.4E-267 T 13-10-2018 IPR010975 Phosphotransferase system, alpha-glucoside-specific IIBC component GO:0008982|GO:0009401 AP3564_01905 ca28fdcd3be9c08af2534214ae396836 538 Gene3D G3DSA:3.30.1360.60 451 530 4.8E-24 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 AP3564_01905 ca28fdcd3be9c08af2534214ae396836 538 Pfam PF02378 Phosphotransferase system, EIIC 10 345 2.7E-74 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AP3564_01905 ca28fdcd3be9c08af2534214ae396836 538 SUPERFAMILY SSF55604 454 527 2.62E-18 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 AP3564_01905 ca28fdcd3be9c08af2534214ae396836 538 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 408 513 1.7E-21 T 13-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AP3564_01905 ca28fdcd3be9c08af2534214ae396836 538 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 466 483 - T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AP3564_01905 ca28fdcd3be9c08af2534214ae396836 538 Pfam PF00367 phosphotransferase system, EIIB 456 487 3.0E-14 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AP3564_17470 17d6d2978ab12df3a31a4b697459d08c 371 SUPERFAMILY SSF53927 3 144 7.53E-46 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 AP3564_17470 17d6d2978ab12df3a31a4b697459d08c 371 SUPERFAMILY SSF53597 147 354 3.93E-59 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AP3564_17470 17d6d2978ab12df3a31a4b697459d08c 371 Pfam PF01872 RibD C-terminal domain 147 352 7.1E-54 T 13-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AP3564_17470 17d6d2978ab12df3a31a4b697459d08c 371 Gene3D G3DSA:3.40.430.10 141 359 1.4E-76 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AP3564_17470 17d6d2978ab12df3a31a4b697459d08c 371 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 50 88 - T 13-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 AP3564_17470 17d6d2978ab12df3a31a4b697459d08c 371 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 7 353 1.3E-126 T 13-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 AP3564_17470 17d6d2978ab12df3a31a4b697459d08c 371 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 2 99 6.0E-21 T 13-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain AP3564_17470 17d6d2978ab12df3a31a4b697459d08c 371 PIRSF PIRSF006769 1 359 1.0E-135 T 13-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 AP3564_17470 17d6d2978ab12df3a31a4b697459d08c 371 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 146 354 1.7E-64 T 13-10-2018 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 AP3564_17470 17d6d2978ab12df3a31a4b697459d08c 371 Gene3D G3DSA:3.40.140.10 1 140 1.9E-45 T 13-10-2018 AP3564_10900 f6ded437fcca91b6c6f651eac0aa08a6 272 Gene3D G3DSA:3.30.420.10 103 268 4.4E-17 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AP3564_10900 f6ded437fcca91b6c6f651eac0aa08a6 272 SUPERFAMILY SSF53098 100 265 4.55E-41 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_10900 f6ded437fcca91b6c6f651eac0aa08a6 272 Pfam PF00665 Integrase core domain 107 221 3.7E-32 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AP3564_10900 f6ded437fcca91b6c6f651eac0aa08a6 272 Pfam PF13276 HTH-like domain 29 83 7.2E-14 T 13-10-2018 IPR025948 HTH-like domain AP3564_10525 f6ded437fcca91b6c6f651eac0aa08a6 272 Gene3D G3DSA:3.30.420.10 103 268 4.4E-17 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AP3564_10525 f6ded437fcca91b6c6f651eac0aa08a6 272 SUPERFAMILY SSF53098 100 265 4.55E-41 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_10525 f6ded437fcca91b6c6f651eac0aa08a6 272 Pfam PF00665 Integrase core domain 107 221 3.7E-32 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AP3564_10525 f6ded437fcca91b6c6f651eac0aa08a6 272 Pfam PF13276 HTH-like domain 29 83 7.2E-14 T 13-10-2018 IPR025948 HTH-like domain AP3564_15730 c485ace95c59af2c1a344c3827662c25 276 Pfam PF00665 Integrase core domain 114 225 4.6E-25 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AP3564_15730 c485ace95c59af2c1a344c3827662c25 276 Gene3D G3DSA:3.30.420.10 110 266 1.9E-17 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AP3564_15730 c485ace95c59af2c1a344c3827662c25 276 Pfam PF13276 HTH-like domain 41 91 4.8E-16 T 13-10-2018 IPR025948 HTH-like domain AP3564_15730 c485ace95c59af2c1a344c3827662c25 276 SUPERFAMILY SSF53098 107 269 2.91E-40 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_08300 903fca24c918b8858803f74eab1273b2 407 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 300 316 1.0E-25 T 13-10-2018 AP3564_08300 903fca24c918b8858803f74eab1273b2 407 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 157 172 1.0E-25 T 13-10-2018 AP3564_08300 903fca24c918b8858803f74eab1273b2 407 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 1.0E-25 T 13-10-2018 AP3564_08300 903fca24c918b8858803f74eab1273b2 407 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 285 300 1.0E-25 T 13-10-2018 AP3564_08300 903fca24c918b8858803f74eab1273b2 407 Gene3D G3DSA:3.50.50.60 7 317 2.2E-64 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_08300 903fca24c918b8858803f74eab1273b2 407 SUPERFAMILY SSF51905 6 383 2.09E-48 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_08300 903fca24c918b8858803f74eab1273b2 407 Gene3D G3DSA:3.30.70.2450 186 272 2.2E-64 T 13-10-2018 AP3564_08300 903fca24c918b8858803f74eab1273b2 407 Pfam PF01494 FAD binding domain 6 328 1.3E-47 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 AP3564_03670 ea0f9ea525396e51eea69bc9442cc245 385 SUPERFAMILY SSF53756 6 382 1.62E-29 T 13-10-2018 AP3564_03670 ea0f9ea525396e51eea69bc9442cc245 385 Gene3D G3DSA:3.40.50.2000 194 384 1.2E-9 T 13-10-2018 AP3564_03670 ea0f9ea525396e51eea69bc9442cc245 385 Gene3D G3DSA:3.40.50.2000 5 193 1.5E-9 T 13-10-2018 AP3564_03670 ea0f9ea525396e51eea69bc9442cc245 385 Pfam PF09314 Domain of unknown function (DUF1972) 1 185 5.9E-80 T 13-10-2018 IPR015393 Domain of unknown function DUF1972 AP3564_03975 d758015893a298165254a822ee2656b8 347 SUPERFAMILY SSF55821 17 215 5.19E-66 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily AP3564_03975 d758015893a298165254a822ee2656b8 347 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 16 213 8.2E-65 T 13-10-2018 IPR006070 YrdC-like domain GO:0003725 AP3564_03975 d758015893a298165254a822ee2656b8 347 Pfam PF01300 Telomere recombination 26 202 1.8E-56 T 13-10-2018 IPR006070 YrdC-like domain GO:0003725 AP3564_03975 d758015893a298165254a822ee2656b8 347 Gene3D G3DSA:3.90.870.10 8 218 5.3E-83 T 13-10-2018 AP3564_03975 d758015893a298165254a822ee2656b8 347 Pfam PF03481 Putative GTP-binding controlling metal-binding 204 340 2.2E-26 T 13-10-2018 IPR005145 Putative GTP-binding controlling metal-binding domain AP3564_03975 d758015893a298165254a822ee2656b8 347 Gene3D G3DSA:3.40.50.11030 220 347 3.8E-41 T 13-10-2018 IPR038385 Threonylcarbamoyl-AMP synthase, C-terminal domain superfamily AP3564_03975 d758015893a298165254a822ee2656b8 347 PIRSF PIRSF004930 1 346 1.0E-131 T 13-10-2018 IPR010923 tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 AP3564_06085 f9646fc462ad1b9ea0727204fa5bed4e 441 Gene3D G3DSA:3.10.580.10 195 348 3.1E-51 T 13-10-2018 AP3564_06085 f9646fc462ad1b9ea0727204fa5bed4e 441 Pfam PF03471 Transporter associated domain 357 431 1.4E-16 T 13-10-2018 IPR005170 Transporter-associated domain AP3564_06085 f9646fc462ad1b9ea0727204fa5bed4e 441 Pfam PF00571 CBS domain 217 273 9.2E-6 T 13-10-2018 IPR000644 CBS domain AP3564_06085 f9646fc462ad1b9ea0727204fa5bed4e 441 Pfam PF00571 CBS domain 290 339 2.3E-4 T 13-10-2018 IPR000644 CBS domain AP3564_06085 f9646fc462ad1b9ea0727204fa5bed4e 441 SUPERFAMILY SSF54631 211 354 1.52E-31 T 13-10-2018 AP3564_06085 f9646fc462ad1b9ea0727204fa5bed4e 441 Pfam PF01595 Domain of unknown function DUF21 8 201 4.4E-50 T 13-10-2018 IPR002550 CNNM, transmembrane domain AP3564_06085 f9646fc462ad1b9ea0727204fa5bed4e 441 SUPERFAMILY SSF56176 353 433 3.54E-18 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AP3564_06085 f9646fc462ad1b9ea0727204fa5bed4e 441 SMART SM01091 355 432 1.3E-20 T 13-10-2018 IPR005170 Transporter-associated domain AP3564_06085 f9646fc462ad1b9ea0727204fa5bed4e 441 Gene3D G3DSA:3.30.465.10 349 430 4.7E-17 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AP3564_09035 1874a0a804a792f86ce88c1a4a2b5fd1 145 Pfam PF01934 Protein of unknown function DUF86 27 128 6.8E-24 T 13-10-2018 IPR008201 Protein of unknown function DUF86 AP3564_09035 1874a0a804a792f86ce88c1a4a2b5fd1 145 Gene3D G3DSA:1.20.120.580 1 144 4.6E-56 T 13-10-2018 IPR037038 Bsu32300-like superfamily AP3564_03060 1ff2ec68f5490e9ee71c920f4c27ec02 497 Gene3D G3DSA:3.80.30.20 130 488 7.0E-69 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe AP3564_03060 1ff2ec68f5490e9ee71c920f4c27ec02 497 Pfam PF04055 Radical SAM superfamily 178 350 2.5E-17 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AP3564_03060 1ff2ec68f5490e9ee71c920f4c27ec02 497 TIGRFAM TIGR03994 rSAM_HemZ: coproporphyrinogen dehydrogenase HemZ 90 488 1.7E-147 T 13-10-2018 IPR023995 Oxygen-independent coproporphyrinogen-III oxidase-like protein HemZ AP3564_03060 1ff2ec68f5490e9ee71c920f4c27ec02 497 SUPERFAMILY SSF102114 167 481 1.31E-69 T 13-10-2018 AP3564_03060 1ff2ec68f5490e9ee71c920f4c27ec02 497 SMART SM00729 170 394 3.4E-48 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AP3564_00970 37db0b3b3ae3eb2670a6c2320805242b 266 Gene3D G3DSA:3.40.50.300 28 176 9.6E-9 T 13-10-2018 AP3564_00970 37db0b3b3ae3eb2670a6c2320805242b 266 SUPERFAMILY SSF52540 29 263 9.61E-26 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_00970 37db0b3b3ae3eb2670a6c2320805242b 266 Pfam PF13401 AAA domain 40 169 3.5E-22 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_00970 37db0b3b3ae3eb2670a6c2320805242b 266 SMART SM00382 41 189 5.9E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_14465 37db0b3b3ae3eb2670a6c2320805242b 266 Gene3D G3DSA:3.40.50.300 28 176 9.6E-9 T 13-10-2018 AP3564_14465 37db0b3b3ae3eb2670a6c2320805242b 266 SUPERFAMILY SSF52540 29 263 9.61E-26 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_14465 37db0b3b3ae3eb2670a6c2320805242b 266 Pfam PF13401 AAA domain 40 169 3.5E-22 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_14465 37db0b3b3ae3eb2670a6c2320805242b 266 SMART SM00382 41 189 5.9E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_12865 37db0b3b3ae3eb2670a6c2320805242b 266 Gene3D G3DSA:3.40.50.300 28 176 9.6E-9 T 13-10-2018 AP3564_12865 37db0b3b3ae3eb2670a6c2320805242b 266 SUPERFAMILY SSF52540 29 263 9.61E-26 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_12865 37db0b3b3ae3eb2670a6c2320805242b 266 Pfam PF13401 AAA domain 40 169 3.5E-22 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_12865 37db0b3b3ae3eb2670a6c2320805242b 266 SMART SM00382 41 189 5.9E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_12720 b4e0e5c8f076cedae43f6d761ba3fa27 66 Pfam PF09963 Uncharacterized protein conserved in bacteria (DUF2197) 1 56 3.8E-31 T 13-10-2018 IPR019241 Protein of unknown function DUF2197 AP3564_15920 55aa5b9ab30ebe6bc41e1ae58d572ff4 551 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 356 400 9.9E-11 T 13-10-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain AP3564_15920 55aa5b9ab30ebe6bc41e1ae58d572ff4 551 Gene3D G3DSA:3.60.15.10 9 432 1.2E-148 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AP3564_15920 55aa5b9ab30ebe6bc41e1ae58d572ff4 551 PIRSF PIRSF004803 1 551 1.8E-191 T 13-10-2018 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 AP3564_15920 55aa5b9ab30ebe6bc41e1ae58d572ff4 551 Hamap MF_01491 Ribonuclease J [rnj]. 2 551 41.007 T 13-10-2018 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 AP3564_15920 55aa5b9ab30ebe6bc41e1ae58d572ff4 551 TIGRFAM TIGR00649 MG423: beta-CASP ribonuclease, RNase J family 7 549 6.4E-180 T 13-10-2018 IPR004613 Ribonuclease J GO:0003723|GO:0046872 AP3564_15920 55aa5b9ab30ebe6bc41e1ae58d572ff4 551 Pfam PF00753 Metallo-beta-lactamase superfamily 16 163 1.3E-5 T 13-10-2018 IPR001279 Metallo-beta-lactamase AP3564_15920 55aa5b9ab30ebe6bc41e1ae58d572ff4 551 SMART SM00849 19 212 7.9E-11 T 13-10-2018 IPR001279 Metallo-beta-lactamase AP3564_15920 55aa5b9ab30ebe6bc41e1ae58d572ff4 551 SUPERFAMILY SSF56281 7 420 1.7E-67 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AP3564_15920 55aa5b9ab30ebe6bc41e1ae58d572ff4 551 Gene3D G3DSA:3.40.50.10710 204 361 1.2E-148 T 13-10-2018 AP3564_15920 55aa5b9ab30ebe6bc41e1ae58d572ff4 551 Gene3D G3DSA:3.10.20.580 445 551 3.0E-39 T 13-10-2018 AP3564_15070 01e05c65dc19345064ab56c20d014ccf 62 SUPERFAMILY SSF103481 2 48 1.44E-10 T 13-10-2018 AP3564_15070 01e05c65dc19345064ab56c20d014ccf 62 Pfam PF00892 EamA-like transporter family 3 44 8.2E-8 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AP3564_07655 c2d3e8a07351df4dfdf1e64cd034af3d 279 Pfam PF02645 Uncharacterised protein, DegV family COG1307 3 278 8.4E-105 T 13-10-2018 IPR003797 DegV AP3564_07655 c2d3e8a07351df4dfdf1e64cd034af3d 279 Gene3D G3DSA:3.30.1180.10 152 279 5.6E-46 T 13-10-2018 AP3564_07655 c2d3e8a07351df4dfdf1e64cd034af3d 279 SUPERFAMILY SSF82549 1 279 9.42E-100 T 13-10-2018 AP3564_07655 c2d3e8a07351df4dfdf1e64cd034af3d 279 Gene3D G3DSA:3.40.50.10170 1 151 2.6E-59 T 13-10-2018 AP3564_07655 c2d3e8a07351df4dfdf1e64cd034af3d 279 TIGRFAM TIGR00762 DegV: EDD domain protein, DegV family 3 277 2.5E-111 T 13-10-2018 IPR003797 DegV AP3564_05480 d2c0e79cd47a807c9be2ba4cea686077 375 Pfam PF02371 Transposase IS116/IS110/IS902 family 253 338 1.6E-25 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_05480 d2c0e79cd47a807c9be2ba4cea686077 375 Pfam PF01548 Transposase 9 153 2.3E-26 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_18470 40f1088d6cd2cc7250549c879cf4e90f 211 Hamap MF_01151 Protein GrpE [grpE]. 14 211 21.84 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AP3564_18470 40f1088d6cd2cc7250549c879cf4e90f 211 Pfam PF01025 GrpE 49 211 1.9E-56 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AP3564_18470 40f1088d6cd2cc7250549c879cf4e90f 211 SUPERFAMILY SSF51064 156 211 1.7E-19 T 13-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 AP3564_18470 40f1088d6cd2cc7250549c879cf4e90f 211 Gene3D G3DSA:2.30.22.10 155 210 1.5E-25 T 13-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 AP3564_18470 40f1088d6cd2cc7250549c879cf4e90f 211 SUPERFAMILY SSF58014 61 155 4.97E-26 T 13-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 AP3564_18470 40f1088d6cd2cc7250549c879cf4e90f 211 Gene3D G3DSA:3.90.20.20 38 154 3.8E-27 T 13-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 AP3564_18470 40f1088d6cd2cc7250549c879cf4e90f 211 PRINTS PR00773 GrpE protein signature 109 124 6.8E-31 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AP3564_18470 40f1088d6cd2cc7250549c879cf4e90f 211 PRINTS PR00773 GrpE protein signature 190 209 6.8E-31 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AP3564_18470 40f1088d6cd2cc7250549c879cf4e90f 211 PRINTS PR00773 GrpE protein signature 81 97 6.8E-31 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AP3564_18470 40f1088d6cd2cc7250549c879cf4e90f 211 PRINTS PR00773 GrpE protein signature 163 178 6.8E-31 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AP3564_18470 40f1088d6cd2cc7250549c879cf4e90f 211 ProSitePatterns PS01071 grpE protein signature. 166 209 - T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AP3564_17520 bfa8dc87283e506a9edf2de92f716851 146 SMART SM00387 35 140 2.1E-10 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_17520 bfa8dc87283e506a9edf2de92f716851 146 TIGRFAM TIGR01925 spIIAB: anti-sigma F factor 1 137 1.0E-74 T 13-10-2018 IPR010194 Anti-sigma F factor GO:0004674|GO:0005524|GO:0006468|GO:0016989|GO:0042174|GO:0045892 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 AP3564_17520 bfa8dc87283e506a9edf2de92f716851 146 Pfam PF13581 Histidine kinase-like ATPase domain 17 136 2.8E-23 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_17520 bfa8dc87283e506a9edf2de92f716851 146 Hamap MF_00637 Anti-sigma F factor [spoIIAB]. 1 140 36.696 T 13-10-2018 IPR010194 Anti-sigma F factor GO:0004674|GO:0005524|GO:0006468|GO:0016989|GO:0042174|GO:0045892 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 AP3564_17520 bfa8dc87283e506a9edf2de92f716851 146 SUPERFAMILY SSF55874 29 135 2.23E-25 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_17520 bfa8dc87283e506a9edf2de92f716851 146 Gene3D G3DSA:3.30.565.10 1 143 1.5E-35 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_18390 1bf0b3fd44b25fabfd70971116564508 94 Pfam PF07873 YabP family 28 91 1.1E-18 T 13-10-2018 IPR022476 Sporulation protein YabP/YqfC AP3564_18390 1bf0b3fd44b25fabfd70971116564508 94 TIGRFAM TIGR02856 spore_yqfC: sporulation protein YqfC 9 92 2.4E-32 T 13-10-2018 IPR022477 Sporulation protein YqfC AP3564_04515 377d7a7c62bfb9f99871babcd9ccb861 240 Gene3D G3DSA:3.40.50.300 1 238 1.1E-69 T 13-10-2018 AP3564_04515 377d7a7c62bfb9f99871babcd9ccb861 240 SMART SM00382 29 208 2.9E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_04515 377d7a7c62bfb9f99871babcd9ccb861 240 Pfam PF00005 ABC transporter 20 161 1.5E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_04515 377d7a7c62bfb9f99871babcd9ccb861 240 SUPERFAMILY SSF52540 4 224 2.45E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_04515 377d7a7c62bfb9f99871babcd9ccb861 240 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_13155 2f356a0a535cbe73f7a8c1a5f85b3daf 253 TIGRFAM TIGR02832 spo_yunB: sporulation protein YunB 15 232 9.8E-51 T 13-10-2018 IPR014197 Sporulation protein YunB AP3564_13155 2f356a0a535cbe73f7a8c1a5f85b3daf 253 Pfam PF09560 Sporulation protein YunB (Spo_YunB) 140 229 1.9E-26 T 13-10-2018 IPR014197 Sporulation protein YunB AP3564_13155 2f356a0a535cbe73f7a8c1a5f85b3daf 253 PIRSF PIRSF021383 1 245 2.4E-62 T 13-10-2018 IPR014197 Sporulation protein YunB AP3564_17110 63af022ced44f35f48499bf7b595785e 179 Gene3D G3DSA:4.10.810.10 124 179 3.3E-19 T 13-10-2018 IPR027393 Virus scaffolding protein, C-terminal GO:0005515 AP3564_17110 63af022ced44f35f48499bf7b595785e 179 Pfam PF08864 UPF0302 domain 9 112 5.5E-48 T 13-10-2018 IPR014963 Uncharacterised domain UPF0302, N-terminal AP3564_17110 63af022ced44f35f48499bf7b595785e 179 Gene3D G3DSA:1.20.1440.290 1 123 3.9E-56 T 13-10-2018 IPR038091 UPF0302, N-terminal domain superfamily AP3564_17110 63af022ced44f35f48499bf7b595785e 179 Pfam PF08858 IDEAL domain 139 175 5.0E-14 T 13-10-2018 IPR014957 IDEAL domain AP3564_17110 63af022ced44f35f48499bf7b595785e 179 Hamap MF_00760 UPF0302 protein . 2 178 32.648 T 13-10-2018 IPR011188 Uncharacterised protein family UPF0302 AP3564_17110 63af022ced44f35f48499bf7b595785e 179 SMART SM00914 139 175 4.7E-13 T 13-10-2018 IPR014957 IDEAL domain AP3564_17110 63af022ced44f35f48499bf7b595785e 179 PIRSF PIRSF007165 1 179 5.8E-80 T 13-10-2018 IPR011188 Uncharacterised protein family UPF0302 AP3564_19345 3346ff014b47a052556191de576c1057 336 SMART SM00244 26 202 3.8E-26 T 13-10-2018 IPR001107 Band 7 domain AP3564_19345 3346ff014b47a052556191de576c1057 336 Pfam PF01145 SPFH domain / Band 7 family 30 216 1.2E-27 T 13-10-2018 IPR001107 Band 7 domain AP3564_19345 3346ff014b47a052556191de576c1057 336 SUPERFAMILY SSF117892 60 195 2.09E-21 T 13-10-2018 IPR036013 Band 7/SPFH domain superfamily AP3564_19345 3346ff014b47a052556191de576c1057 336 Gene3D G3DSA:3.30.479.30 85 192 7.3E-21 T 13-10-2018 AP3564_19345 3346ff014b47a052556191de576c1057 336 TIGRFAM TIGR01933 hflK: HflK protein 29 302 6.9E-70 T 13-10-2018 IPR010201 HflK GO:0016021 AP3564_05595 53a74a1d5bff4ea6ac5fd9e295a8b361 353 Pfam PF02457 DisA bacterial checkpoint controller nucleotide-binding 22 134 9.4E-29 T 13-10-2018 IPR003390 DNA integrity scanning protein, DisA, N-terminal AP3564_05595 53a74a1d5bff4ea6ac5fd9e295a8b361 353 Gene3D G3DSA:1.10.150.20 286 348 1.0E-25 T 13-10-2018 AP3564_05595 53a74a1d5bff4ea6ac5fd9e295a8b361 353 SUPERFAMILY SSF47781 284 342 1.26E-12 T 13-10-2018 IPR010994 RuvA domain 2-like AP3564_05595 53a74a1d5bff4ea6ac5fd9e295a8b361 353 Pfam PF10635 DisA bacterial checkpoint controller linker region 139 277 9.8E-50 T 13-10-2018 IPR018906 DNA integrity scanning, DisA, linker region AP3564_05595 53a74a1d5bff4ea6ac5fd9e295a8b361 353 Gene3D G3DSA:3.40.1700.10 3 139 4.1E-57 T 13-10-2018 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily AP3564_05595 53a74a1d5bff4ea6ac5fd9e295a8b361 353 Hamap MF_01438 DNA integrity scanning protein DisA [disA]. 1 350 44.554 T 13-10-2018 IPR023763 DNA integrity scanning protein, DisA AP3564_05595 53a74a1d5bff4ea6ac5fd9e295a8b361 353 Pfam PF12826 Helix-hairpin-helix motif 302 338 2.5E-6 T 13-10-2018 AP3564_05595 53a74a1d5bff4ea6ac5fd9e295a8b361 353 Gene3D G3DSA:1.20.1260.110 140 284 2.1E-44 T 13-10-2018 IPR038331 DisA, linker domain superfamily AP3564_05595 53a74a1d5bff4ea6ac5fd9e295a8b361 353 SUPERFAMILY SSF143597 15 138 3.14E-30 T 13-10-2018 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily AP3564_02855 1b24c5ad75c9025a5137ee136f21c648 582 SUPERFAMILY SSF55957 445 574 8.76E-17 T 13-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AP3564_02855 1b24c5ad75c9025a5137ee136f21c648 582 Gene3D G3DSA:3.40.120.10 326 453 2.4E-37 T 13-10-2018 AP3564_02855 1b24c5ad75c9025a5137ee136f21c648 582 SUPERFAMILY SSF53738 34 236 4.71E-47 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AP3564_02855 1b24c5ad75c9025a5137ee136f21c648 582 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 211 315 2.3E-23 T 13-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AP3564_02855 1b24c5ad75c9025a5137ee136f21c648 582 Gene3D G3DSA:3.30.310.50 474 573 5.9E-10 T 13-10-2018 AP3564_02855 1b24c5ad75c9025a5137ee136f21c648 582 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 503 551 1.1E-9 T 13-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AP3564_02855 1b24c5ad75c9025a5137ee136f21c648 582 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 44 182 6.8E-42 T 13-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AP3564_02855 1b24c5ad75c9025a5137ee136f21c648 582 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 141 150 - T 13-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AP3564_02855 1b24c5ad75c9025a5137ee136f21c648 582 SUPERFAMILY SSF53738 209 316 2.03E-19 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AP3564_02855 1b24c5ad75c9025a5137ee136f21c648 582 Gene3D G3DSA:3.40.120.10 210 325 1.1E-22 T 13-10-2018 AP3564_02855 1b24c5ad75c9025a5137ee136f21c648 582 SUPERFAMILY SSF53738 305 456 5.1E-34 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AP3564_02855 1b24c5ad75c9025a5137ee136f21c648 582 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 140 154 2.2E-6 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AP3564_02855 1b24c5ad75c9025a5137ee136f21c648 582 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 297 312 2.2E-6 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AP3564_02855 1b24c5ad75c9025a5137ee136f21c648 582 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 230 249 2.2E-6 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AP3564_02855 1b24c5ad75c9025a5137ee136f21c648 582 Gene3D G3DSA:3.40.120.10 35 193 4.1E-48 T 13-10-2018 AP3564_02855 1b24c5ad75c9025a5137ee136f21c648 582 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 325 451 1.4E-23 T 13-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AP3564_14500 354102118f9e46ec4fa032642a2c639f 262 Pfam PF12730 ABC-2 family transporter protein 7 158 2.4E-16 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 AP3564_14500 354102118f9e46ec4fa032642a2c639f 262 TIGRFAM TIGR03733 lanti_perm_MutG: lantibiotic protection ABC transporter permease subunit, MutG family 6 259 2.7E-79 T 13-10-2018 IPR022294 Lantibiotic protection ABC transporter permease subunit, MutG family AP3564_06700 57d76df6e5af88db0d25c6d71b18ca95 247 Gene3D G3DSA:3.20.20.190 2 245 7.2E-73 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 AP3564_06700 57d76df6e5af88db0d25c6d71b18ca95 247 SUPERFAMILY SSF51695 5 241 4.97E-67 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 AP3564_06700 57d76df6e5af88db0d25c6d71b18ca95 247 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 10 237 6.8E-44 T 13-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 AP3564_15120 e14c351ba46b5d835490ec5c28133e40 104 PIRSF PIRSF039032 2 104 1.3E-16 T 13-10-2018 IPR009387 Toxin HigB-2 AP3564_00285 0d4374731ff3c0247554f3bd60f945a2 232 SMART SM00382 26 216 6.3E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_00285 0d4374731ff3c0247554f3bd60f945a2 232 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_00285 0d4374731ff3c0247554f3bd60f945a2 232 Gene3D G3DSA:3.40.50.300 1 232 1.7E-55 T 13-10-2018 AP3564_00285 0d4374731ff3c0247554f3bd60f945a2 232 SUPERFAMILY SSF52540 2 227 3.01E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_00285 0d4374731ff3c0247554f3bd60f945a2 232 Pfam PF00005 ABC transporter 17 160 3.7E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_17580 8f11fa658b92e354a62b69c2ef0f2f2b 61 Pfam PF13072 Protein of unknown function (DUF3936) 4 37 2.2E-6 T 13-10-2018 IPR025177 Cell division inhibitor MciZ AP3564_10365 752e795d8e67762866e94acaa953109c 71 Pfam PF11213 Protein of unknown function (DUF3006) 4 69 1.8E-23 T 13-10-2018 IPR021377 Protein of unknown function DUF3006 AP3564_03675 bdf6f1ff39afcccf30e7b76caa2f5903 286 Pfam PF00535 Glycosyl transferase family 2 6 145 4.1E-20 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AP3564_03675 bdf6f1ff39afcccf30e7b76caa2f5903 286 SUPERFAMILY SSF53448 4 256 2.06E-32 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AP3564_03675 bdf6f1ff39afcccf30e7b76caa2f5903 286 Gene3D G3DSA:3.90.550.10 1 214 2.8E-28 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AP3564_03280 5e28b0ad7e3beffbd0255a6b3f9cfbf9 210 SUPERFAMILY SSF55729 46 117 3.48E-7 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase AP3564_03280 5e28b0ad7e3beffbd0255a6b3f9cfbf9 210 PIRSF PIRSF021278 2 210 7.3E-88 T 13-10-2018 IPR024699 Acetoin utilization protein AcuA GO:0019152|GO:0045150 AP3564_03280 5e28b0ad7e3beffbd0255a6b3f9cfbf9 210 Pfam PF00583 Acetyltransferase (GNAT) family 36 117 6.5E-6 T 13-10-2018 IPR000182 GNAT domain AP3564_03280 5e28b0ad7e3beffbd0255a6b3f9cfbf9 210 Gene3D G3DSA:3.40.630.30 1 210 1.7E-90 T 13-10-2018 AP3564_04095 47a9c2b2a8d97e477eda61b6fb9328e1 686 SUPERFAMILY SSF56601 219 659 6.01E-117 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AP3564_04095 47a9c2b2a8d97e477eda61b6fb9328e1 686 Gene3D G3DSA:1.10.3810.10 64 259 1.1E-75 T 13-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AP3564_04095 47a9c2b2a8d97e477eda61b6fb9328e1 686 SUPERFAMILY SSF53955 50 261 3.37E-77 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily AP3564_04095 47a9c2b2a8d97e477eda61b6fb9328e1 686 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 73 608 7.2E-182 T 13-10-2018 AP3564_04095 47a9c2b2a8d97e477eda61b6fb9328e1 686 Pfam PF00905 Penicillin binding protein transpeptidase domain 327 571 1.9E-29 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AP3564_04095 47a9c2b2a8d97e477eda61b6fb9328e1 686 Gene3D G3DSA:3.40.710.10 260 665 1.2E-115 T 13-10-2018 AP3564_04095 47a9c2b2a8d97e477eda61b6fb9328e1 686 Pfam PF00912 Transglycosylase 65 237 3.0E-63 T 13-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AP3564_12480 b3029eae65772e8b9c6afddf27fb5e4c 229 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_12480 b3029eae65772e8b9c6afddf27fb5e4c 229 Gene3D G3DSA:3.40.50.300 1 225 1.3E-70 T 13-10-2018 AP3564_12480 b3029eae65772e8b9c6afddf27fb5e4c 229 SMART SM00382 30 217 4.5E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_12480 b3029eae65772e8b9c6afddf27fb5e4c 229 Pfam PF00005 ABC transporter 21 169 2.2E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_12480 b3029eae65772e8b9c6afddf27fb5e4c 229 SUPERFAMILY SSF52540 1 221 1.17E-75 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_09165 ade7d2a445c5337db5399071c69a44b2 486 Hamap MF_01670 Malonate-semialdehyde dehydrogenase [iolA]. 3 485 72.249 T 13-10-2018 IPR023510 Methylmalonate-semialdehyde dehydrogenase, Gram-positive bacteria GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642 AP3564_09165 ade7d2a445c5337db5399071c69a44b2 486 Pfam PF00171 Aldehyde dehydrogenase family 17 480 4.8E-155 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AP3564_09165 ade7d2a445c5337db5399071c69a44b2 486 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 279 290 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AP3564_09165 ade7d2a445c5337db5399071c69a44b2 486 SUPERFAMILY SSF53720 4 485 2.23E-155 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AP3564_09165 ade7d2a445c5337db5399071c69a44b2 486 Gene3D G3DSA:3.40.309.10 254 454 7.3E-161 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AP3564_09165 ade7d2a445c5337db5399071c69a44b2 486 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 10 485 6.4E-188 T 13-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 AP3564_09165 ade7d2a445c5337db5399071c69a44b2 486 Gene3D G3DSA:3.40.605.10 24 462 7.3E-161 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AP3564_10110 80cafa0580f7960926022ecbe8a7ea1e 259 Pfam PF10026 Predicted Zn-dependent protease (DUF2268) 61 252 3.4E-55 T 13-10-2018 IPR018728 Domain of unknown function DUF2268 AP3564_13945 25bdf0c053e9de4e12ee08a0f9a8c89e 129 Gene3D G3DSA:3.40.1260.10 55 129 4.8E-24 T 13-10-2018 IPR027396 DsrEFH-like AP3564_13945 25bdf0c053e9de4e12ee08a0f9a8c89e 129 Gene3D G3DSA:3.40.1260.10 1 54 2.5E-9 T 13-10-2018 IPR027396 DsrEFH-like AP3564_13945 25bdf0c053e9de4e12ee08a0f9a8c89e 129 SUPERFAMILY SSF75169 1 129 3.03E-24 T 13-10-2018 IPR027396 DsrEFH-like AP3564_13945 25bdf0c053e9de4e12ee08a0f9a8c89e 129 Pfam PF13686 DsrE/DsrF/DrsH-like family 2 52 1.6E-10 T 13-10-2018 IPR032836 DsrE2-like family AP3564_13945 25bdf0c053e9de4e12ee08a0f9a8c89e 129 Pfam PF13686 DsrE/DsrF/DrsH-like family 58 127 1.5E-24 T 13-10-2018 IPR032836 DsrE2-like family AP3564_07000 d4ebaa51b56924fa11ecfed2db590691 540 SUPERFAMILY SSF52029 183 374 1.5E-85 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily AP3564_07000 d4ebaa51b56924fa11ecfed2db590691 540 SUPERFAMILY SSF54849 136 204 1.26E-26 T 13-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily AP3564_07000 d4ebaa51b56924fa11ecfed2db590691 540 Hamap MF_00600 60 kDa chaperonin [groL]. 1 539 42.704 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AP3564_07000 d4ebaa51b56924fa11ecfed2db590691 540 Gene3D G3DSA:3.50.7.10 190 370 6.5E-239 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily AP3564_07000 d4ebaa51b56924fa11ecfed2db590691 540 TIGRFAM TIGR02348 GroEL: chaperonin GroL 2 524 2.0E-262 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AP3564_07000 d4ebaa51b56924fa11ecfed2db590691 540 Pfam PF00118 TCP-1/cpn60 chaperonin family 22 522 3.9E-106 T 13-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 AP3564_07000 d4ebaa51b56924fa11ecfed2db590691 540 Gene3D G3DSA:3.30.260.10 135 408 6.5E-239 T 13-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily AP3564_07000 d4ebaa51b56924fa11ecfed2db590691 540 Gene3D G3DSA:1.10.560.10 7 518 6.5E-239 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily AP3564_07000 d4ebaa51b56924fa11ecfed2db590691 540 SUPERFAMILY SSF48592 5 518 6.87E-82 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily AP3564_07000 d4ebaa51b56924fa11ecfed2db590691 540 PRINTS PR00298 60kDa chaperonin signature 82 109 3.0E-73 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AP3564_07000 d4ebaa51b56924fa11ecfed2db590691 540 PRINTS PR00298 60kDa chaperonin signature 26 52 3.0E-73 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AP3564_07000 d4ebaa51b56924fa11ecfed2db590691 540 PRINTS PR00298 60kDa chaperonin signature 348 373 3.0E-73 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AP3564_07000 d4ebaa51b56924fa11ecfed2db590691 540 PRINTS PR00298 60kDa chaperonin signature 266 289 3.0E-73 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AP3564_07000 d4ebaa51b56924fa11ecfed2db590691 540 PRINTS PR00298 60kDa chaperonin signature 396 417 3.0E-73 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AP3564_07000 d4ebaa51b56924fa11ecfed2db590691 540 ProSitePatterns PS00296 Chaperonins cpn60 signature. 403 414 - T 13-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AP3564_19165 dd033bb227f958983b5a109712e6a8b2 257 Gene3D G3DSA:3.40.50.620 1 256 6.7E-83 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AP3564_19165 dd033bb227f958983b5a109712e6a8b2 257 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 155 175 - T 13-10-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 AP3564_19165 dd033bb227f958983b5a109712e6a8b2 257 PIRSF PIRSF000090 1 257 9.2E-78 T 13-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 AP3564_19165 dd033bb227f958983b5a109712e6a8b2 257 SUPERFAMILY SSF52402 2 246 1.32E-75 T 13-10-2018 AP3564_19165 dd033bb227f958983b5a109712e6a8b2 257 SMART SM00893 21 211 3.2E-62 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AP3564_19165 dd033bb227f958983b5a109712e6a8b2 257 Pfam PF01012 Electron transfer flavoprotein domain 24 206 1.4E-49 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AP3564_09565 5bdd30ab0003d2a15ab60a4bd4ed0352 401 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 247 386 1.1E-71 T 13-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AP3564_09565 5bdd30ab0003d2a15ab60a4bd4ed0352 401 Gene3D G3DSA:3.30.300.10 7 247 6.1E-186 T 13-10-2018 AP3564_09565 5bdd30ab0003d2a15ab60a4bd4ed0352 401 Gene3D G3DSA:3.30.300.10 104 389 6.1E-186 T 13-10-2018 AP3564_09565 5bdd30ab0003d2a15ab60a4bd4ed0352 401 PIRSF PIRSF000497 1 398 2.1E-183 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AP3564_09565 5bdd30ab0003d2a15ab60a4bd4ed0352 401 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 4 397 60.975 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AP3564_09565 5bdd30ab0003d2a15ab60a4bd4ed0352 401 SUPERFAMILY SSF55973 125 246 7.3E-53 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AP3564_09565 5bdd30ab0003d2a15ab60a4bd4ed0352 401 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 7 395 2.1E-191 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AP3564_09565 5bdd30ab0003d2a15ab60a4bd4ed0352 401 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 273 281 - T 13-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AP3564_09565 5bdd30ab0003d2a15ab60a4bd4ed0352 401 Gene3D G3DSA:3.30.300.10 13 284 6.1E-186 T 13-10-2018 AP3564_09565 5bdd30ab0003d2a15ab60a4bd4ed0352 401 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 129 139 - T 13-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AP3564_09565 5bdd30ab0003d2a15ab60a4bd4ed0352 401 SUPERFAMILY SSF55973 5 111 1.29E-48 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AP3564_09565 5bdd30ab0003d2a15ab60a4bd4ed0352 401 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 6 103 3.2E-45 T 13-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AP3564_09565 5bdd30ab0003d2a15ab60a4bd4ed0352 401 SUPERFAMILY SSF55973 247 396 1.96E-72 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AP3564_09565 5bdd30ab0003d2a15ab60a4bd4ed0352 401 Pfam PF02772 S-adenosylmethionine synthetase, central domain 128 245 8.5E-51 T 13-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AP3564_03810 5e3a84823e735d196db8bb6331f3e377 272 SUPERFAMILY SSF117143 110 229 3.27E-11 T 13-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like AP3564_03810 5e3a84823e735d196db8bb6331f3e377 272 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 191 266 4.5E-18 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain AP3564_03810 5e3a84823e735d196db8bb6331f3e377 272 Pfam PF00460 Flagella basal body rod protein 5 35 1.6E-9 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AP3564_03810 5e3a84823e735d196db8bb6331f3e377 272 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site AP3564_03810 5e3a84823e735d196db8bb6331f3e377 272 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 147 1.1E-27 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G AP3564_06185 8055d9e7b1678a0a9b0d8d7a113f599b 358 Gene3D G3DSA:3.20.20.150 1 355 4.1E-149 T 13-10-2018 AP3564_06185 8055d9e7b1678a0a9b0d8d7a113f599b 358 Hamap MF_00106 Mannonate dehydratase [uxuA]. 1 358 170.352 T 13-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 AP3564_06185 8055d9e7b1678a0a9b0d8d7a113f599b 358 Pfam PF03786 D-mannonate dehydratase (UxuA) 1 350 1.0E-163 T 13-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 AP3564_06185 8055d9e7b1678a0a9b0d8d7a113f599b 358 PIRSF PIRSF016049 1 356 8.4E-125 T 13-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 AP3564_06185 8055d9e7b1678a0a9b0d8d7a113f599b 358 TIGRFAM TIGR00695 uxuA: mannonate dehydratase 153 354 5.7E-75 T 13-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 AP3564_06185 8055d9e7b1678a0a9b0d8d7a113f599b 358 SUPERFAMILY SSF51658 1 350 2.02E-89 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily AP3564_04265 2b1315e4deb7629adad7cd9bc0e29754 249 Pfam PF00881 Nitroreductase family 8 165 4.9E-23 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 AP3564_04265 2b1315e4deb7629adad7cd9bc0e29754 249 Gene3D G3DSA:3.40.109.10 1 249 2.8E-77 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AP3564_04265 2b1315e4deb7629adad7cd9bc0e29754 249 SUPERFAMILY SSF55469 2 248 8.64E-70 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AP3564_04265 2b1315e4deb7629adad7cd9bc0e29754 249 PIRSF PIRSF005426 1 249 1.9E-87 T 13-10-2018 IPR016446 Flavin oxidoreductase Frp family GO:0016491|GO:0055114 AP3564_12340 966832d6ec486cf54046b8836f8f68cf 304 Pfam PF00294 pfkB family carbohydrate kinase 22 282 2.3E-59 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB AP3564_12340 966832d6ec486cf54046b8836f8f68cf 304 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 2 300 7.8E-111 T 13-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 AP3564_12340 966832d6ec486cf54046b8836f8f68cf 304 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 243 256 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AP3564_12340 966832d6ec486cf54046b8836f8f68cf 304 Gene3D G3DSA:3.40.1190.20 1 303 3.8E-110 T 13-10-2018 IPR029056 Ribokinase-like AP3564_12340 966832d6ec486cf54046b8836f8f68cf 304 PIRSF PIRSF000535 1 302 2.5E-88 T 13-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 AP3564_12340 966832d6ec486cf54046b8836f8f68cf 304 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 36 60 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AP3564_12340 966832d6ec486cf54046b8836f8f68cf 304 TIGRFAM TIGR03828 pfkB: 1-phosphofructokinase 2 300 1.3E-110 T 13-10-2018 IPR022463 Fructose 1-phosphate kinase GO:0008662 KEGG: 00051+2.7.1.56 AP3564_12340 966832d6ec486cf54046b8836f8f68cf 304 SUPERFAMILY SSF53613 1 301 5.61E-71 T 13-10-2018 IPR029056 Ribokinase-like AP3564_18555 c71767d7b985dc55699fcaaabb091e96 189 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 6 187 3.3E-63 T 13-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 AP3564_18555 c71767d7b985dc55699fcaaabb091e96 189 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 2 188 32.893 T 13-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 AP3564_18555 c71767d7b985dc55699fcaaabb091e96 189 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 4 68 1.8E-13 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AP3564_18555 c71767d7b985dc55699fcaaabb091e96 189 SUPERFAMILY SSF52374 3 188 5.94E-59 T 13-10-2018 AP3564_18555 c71767d7b985dc55699fcaaabb091e96 189 Gene3D G3DSA:3.40.50.620 1 188 4.7E-68 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AP3564_18555 c71767d7b985dc55699fcaaabb091e96 189 Pfam PF01467 Cytidylyltransferase-like 6 162 4.7E-37 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AP3564_16180 4db6e39eacbaf645a291258d4686fd1f 423 Pfam PF02120 Flagellar hook-length control protein FliK 305 376 4.4E-17 T 13-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal AP3564_16180 4db6e39eacbaf645a291258d4686fd1f 423 Gene3D G3DSA:3.30.750.140 280 410 1.6E-11 T 13-10-2018 IPR038610 FliK-like, C-terminal domain superfamily AP3564_18940 9a2f2aa39bb8ac67b18e5a70fcef2219 225 Pfam PF04002 RadC-like JAB domain 104 223 4.9E-49 T 13-10-2018 IPR025657 RadC-like JAB domain AP3564_18940 9a2f2aa39bb8ac67b18e5a70fcef2219 225 Gene3D G3DSA:3.40.140.10 101 225 5.3E-49 T 13-10-2018 AP3564_18940 9a2f2aa39bb8ac67b18e5a70fcef2219 225 TIGRFAM TIGR00608 radc: DNA repair protein RadC 12 225 1.1E-87 T 13-10-2018 IPR001405 Uncharacterised protein family UPF0758 AP3564_18940 9a2f2aa39bb8ac67b18e5a70fcef2219 225 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 174 179 - T 13-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site AP3564_18940 9a2f2aa39bb8ac67b18e5a70fcef2219 225 SUPERFAMILY SSF47781 17 91 6.04E-10 T 13-10-2018 IPR010994 RuvA domain 2-like AP3564_18940 9a2f2aa39bb8ac67b18e5a70fcef2219 225 Gene3D G3DSA:1.10.150.20 48 88 2.3E-9 T 13-10-2018 AP3564_19310 cb5bbd4c5b25ae81abd8ee0b4f56fd21 126 SUPERFAMILY SSF56276 2 113 6.28E-40 T 13-10-2018 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 AP3564_19310 cb5bbd4c5b25ae81abd8ee0b4f56fd21 126 Hamap MF_00464 S-adenosylmethionine decarboxylase proenzyme [speH]. 1 116 31.605 T 13-10-2018 IPR017716 S-adenosylmethionine decarboxylase proenzyme GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 AP3564_19310 cb5bbd4c5b25ae81abd8ee0b4f56fd21 126 Gene3D G3DSA:3.30.360.110 1 62 3.1E-26 T 13-10-2018 AP3564_19310 cb5bbd4c5b25ae81abd8ee0b4f56fd21 126 TIGRFAM TIGR03330 SAM_DCase_Bsu: S-adenosylmethionine decarboxylase proenzyme 3 112 5.0E-41 T 13-10-2018 IPR017716 S-adenosylmethionine decarboxylase proenzyme GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 AP3564_19310 cb5bbd4c5b25ae81abd8ee0b4f56fd21 126 Pfam PF02675 S-adenosylmethionine decarboxylase 7 112 2.0E-36 T 13-10-2018 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 AP3564_19310 cb5bbd4c5b25ae81abd8ee0b4f56fd21 126 Gene3D G3DSA:3.30.160.750 63 125 4.3E-18 T 13-10-2018 AP3564_10330 be7c70d2c85cff88dbbc2b4d0ed24942 336 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 41 336 1.6E-64 T 13-10-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 AP3564_10330 be7c70d2c85cff88dbbc2b4d0ed24942 336 Gene3D G3DSA:3.40.190.10 157 336 1.1E-30 T 13-10-2018 AP3564_10330 be7c70d2c85cff88dbbc2b4d0ed24942 336 SMART SM00062 40 268 0.0031 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AP3564_10330 be7c70d2c85cff88dbbc2b4d0ed24942 336 SUPERFAMILY SSF53850 38 268 2.35E-45 T 13-10-2018 AP3564_10330 be7c70d2c85cff88dbbc2b4d0ed24942 336 Gene3D G3DSA:3.40.190.10 39 150 3.8E-22 T 13-10-2018 AP3564_10330 be7c70d2c85cff88dbbc2b4d0ed24942 336 Pfam PF13379 NMT1-like family 35 275 9.9E-31 T 13-10-2018 AP3564_18215 0e7e03f356664e87d311c8284f5b64c6 260 Pfam PF06691 Protein of unknown function (DUF1189) 4 246 1.5E-62 T 13-10-2018 IPR009574 Protein of unknown function DUF1189 AP3564_17660 3ebea78da2c403e117ec6189adab0bf0 341 Hamap MF_01614 NADPH dehydrogenase [namA]. 3 339 65.465 T 13-10-2018 IPR023663 NADPH dehydrogenase GO:0003959|GO:0055114 AP3564_17660 3ebea78da2c403e117ec6189adab0bf0 341 Gene3D G3DSA:3.20.20.70 3 339 4.1E-126 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_17660 3ebea78da2c403e117ec6189adab0bf0 341 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 6 326 2.4E-89 T 13-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 AP3564_17660 3ebea78da2c403e117ec6189adab0bf0 341 SUPERFAMILY SSF51395 5 334 6.77E-112 T 13-10-2018 AP3564_02350 f980ec149f938241d1cecf367bbeb03f 53 Pfam PF04259 Small, acid-soluble spore protein, gamma-type 8 53 1.3E-13 T 13-10-2018 IPR006341 Acid-soluble spore protein, gamma-type GO:0030435 AP3564_02350 f980ec149f938241d1cecf367bbeb03f 53 TIGRFAM TIGR01442 SASP_gamma: small, acid-soluble spore protein, gamma-type 7 53 1.3E-16 T 13-10-2018 IPR006341 Acid-soluble spore protein, gamma-type GO:0030435 AP3564_11035 442f6b330b613a38c29d7ba48d297631 262 Pfam PF06182 ABC-2 family transporter protein 37 261 5.8E-53 T 13-10-2018 IPR010390 Protein of unknown function DUF990 AP3564_06500 521a18c1f9b3e250b2475d0d9b270b0a 417 Pfam PF01609 Transposase DDE domain 124 336 1.3E-30 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_06500 521a18c1f9b3e250b2475d0d9b270b0a 417 SUPERFAMILY SSF53098 77 362 7.59E-43 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_07190 f6a827ef07537caeac82edd5426382bf 440 Gene3D G3DSA:1.20.1250.20 2 435 3.7E-83 T 13-10-2018 AP3564_07190 f6a827ef07537caeac82edd5426382bf 440 Pfam PF07690 Major Facilitator Superfamily 24 393 4.2E-48 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AP3564_07190 f6a827ef07537caeac82edd5426382bf 440 SUPERFAMILY SSF103473 8 433 8.76E-83 T 13-10-2018 IPR036259 MFS transporter superfamily AP3564_07525 c242beb471857d9b57eae525712a7fcf 428 PRINTS PR00173 Glutamate-aspartate symporter signature 291 317 8.5E-33 T 13-10-2018 AP3564_07525 c242beb471857d9b57eae525712a7fcf 428 PRINTS PR00173 Glutamate-aspartate symporter signature 326 345 8.5E-33 T 13-10-2018 AP3564_07525 c242beb471857d9b57eae525712a7fcf 428 PRINTS PR00173 Glutamate-aspartate symporter signature 43 63 8.5E-33 T 13-10-2018 AP3564_07525 c242beb471857d9b57eae525712a7fcf 428 PRINTS PR00173 Glutamate-aspartate symporter signature 73 98 8.5E-33 T 13-10-2018 AP3564_07525 c242beb471857d9b57eae525712a7fcf 428 PRINTS PR00173 Glutamate-aspartate symporter signature 144 166 8.5E-33 T 13-10-2018 AP3564_07525 c242beb471857d9b57eae525712a7fcf 428 PRINTS PR00173 Glutamate-aspartate symporter signature 2 22 8.5E-33 T 13-10-2018 AP3564_07525 c242beb471857d9b57eae525712a7fcf 428 SUPERFAMILY SSF118215 8 401 3.27E-121 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 AP3564_07525 c242beb471857d9b57eae525712a7fcf 428 Pfam PF00375 Sodium:dicarboxylate symporter family 8 400 2.3E-113 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AP3564_07525 c242beb471857d9b57eae525712a7fcf 428 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 294 317 - T 13-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site AP3564_07525 c242beb471857d9b57eae525712a7fcf 428 Gene3D G3DSA:1.10.3860.10 2 418 2.1E-126 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 AP3564_10645 a194a575db2101999eb0aa6aeae61f59 465 Gene3D G3DSA:3.30.565.10 302 456 3.0E-47 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_10645 a194a575db2101999eb0aa6aeae61f59 465 SUPERFAMILY SSF47384 219 300 5.3E-20 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AP3564_10645 a194a575db2101999eb0aa6aeae61f59 465 SUPERFAMILY SSF55874 290 454 1.01E-49 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_10645 a194a575db2101999eb0aa6aeae61f59 465 SUPERFAMILY SSF158472 181 229 7.32E-9 T 13-10-2018 AP3564_10645 a194a575db2101999eb0aa6aeae61f59 465 SMART SM00387 345 457 3.0E-41 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_10645 a194a575db2101999eb0aa6aeae61f59 465 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 346 454 5.8E-30 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_10645 a194a575db2101999eb0aa6aeae61f59 465 Pfam PF00512 His Kinase A (phospho-acceptor) domain 235 299 9.1E-19 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AP3564_10645 a194a575db2101999eb0aa6aeae61f59 465 SMART SM00388 234 300 1.9E-21 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AP3564_10645 a194a575db2101999eb0aa6aeae61f59 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 410 2.3E-20 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_10645 a194a575db2101999eb0aa6aeae61f59 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 382 396 2.3E-20 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_10645 a194a575db2101999eb0aa6aeae61f59 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 441 454 2.3E-20 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_10645 a194a575db2101999eb0aa6aeae61f59 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 417 435 2.3E-20 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_10645 a194a575db2101999eb0aa6aeae61f59 465 Gene3D G3DSA:1.20.1480.50 143 239 1.8E-13 T 13-10-2018 AP3564_10645 a194a575db2101999eb0aa6aeae61f59 465 Gene3D G3DSA:1.10.287.130 240 301 2.4E-17 T 13-10-2018 AP3564_10645 a194a575db2101999eb0aa6aeae61f59 465 Pfam PF00672 HAMP domain 186 228 2.6E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AP3564_10645 a194a575db2101999eb0aa6aeae61f59 465 SMART SM00304 181 233 1.3E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AP3564_06860 5449bc620861df44a357f1a0f6277ea7 152 Pfam PF17283 SprT-like zinc ribbon domain 114 147 2.5E-7 T 13-10-2018 IPR035240 SprT-like, zinc ribbon domain AP3564_06860 5449bc620861df44a357f1a0f6277ea7 152 Pfam PF10263 SprT-like family 7 97 4.5E-13 T 13-10-2018 IPR006640 SprT-like AP3564_06860 5449bc620861df44a357f1a0f6277ea7 152 SMART SM00731 4 148 2.1E-53 T 13-10-2018 IPR006640 SprT-like AP3564_06860 5449bc620861df44a357f1a0f6277ea7 152 Hamap MF_00745 Protein SprT-like. 4 148 39.231 T 13-10-2018 IPR023524 Uncharacterised protein family SprT-like AP3564_16595 142745f0ec7d2a744aa5904443d58abf 258 SUPERFAMILY SSF55174 36 253 2.59E-33 T 13-10-2018 AP3564_16595 142745f0ec7d2a744aa5904443d58abf 258 Gene3D G3DSA:3.30.1370.160 3 80 4.7E-32 T 13-10-2018 AP3564_16595 142745f0ec7d2a744aa5904443d58abf 258 Gene3D G3DSA:3.30.70.330 81 167 1.6E-29 T 13-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily AP3564_16595 142745f0ec7d2a744aa5904443d58abf 258 Pfam PF01479 S4 domain 183 227 2.3E-8 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_16595 142745f0ec7d2a744aa5904443d58abf 258 SMART SM00363 182 239 8.2E-11 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_16595 142745f0ec7d2a744aa5904443d58abf 258 Gene3D G3DSA:3.10.290.10 181 233 8.1E-11 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AP3564_16285 ae571738244cd0370cb4b33d33a74ee0 260 SUPERFAMILY SSF53098 61 256 4.25E-67 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_16285 ae571738244cd0370cb4b33d33a74ee0 260 Pfam PF01351 Ribonuclease HII 74 250 2.1E-35 T 13-10-2018 IPR024567 Ribonuclease HII/HIII domain AP3564_16285 ae571738244cd0370cb4b33d33a74ee0 260 Gene3D G3DSA:3.30.420.10 45 259 3.7E-77 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AP3564_16285 ae571738244cd0370cb4b33d33a74ee0 260 Hamap MF_00052_B Ribonuclease HII [rnhB]. 72 251 34.209 T 13-10-2018 IPR022898 Ribonuclease HII GO:0004523 AP3564_11905 d2a6964b184946c69f2b4c7048d3080f 104 Gene3D G3DSA:1.10.10.10 4 104 5.7E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_11905 d2a6964b184946c69f2b4c7048d3080f 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 42 53 6.9E-15 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AP3564_11905 d2a6964b184946c69f2b4c7048d3080f 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 70 85 6.9E-15 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AP3564_11905 d2a6964b184946c69f2b4c7048d3080f 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 22 37 6.9E-15 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AP3564_11905 d2a6964b184946c69f2b4c7048d3080f 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 55 70 6.9E-15 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AP3564_11905 d2a6964b184946c69f2b4c7048d3080f 104 Pfam PF01022 Bacterial regulatory protein, arsR family 27 73 2.4E-17 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AP3564_11905 d2a6964b184946c69f2b4c7048d3080f 104 SMART SM00418 20 99 6.2E-34 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AP3564_11905 d2a6964b184946c69f2b4c7048d3080f 104 SUPERFAMILY SSF46785 9 102 6.67E-28 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_16210 ddab929f57ec5b5817fd38441d1a8bf9 534 Pfam PF08345 Flagellar M-ring protein C-terminal 255 403 6.6E-25 T 13-10-2018 IPR013556 Flagellar M-ring C-terminal AP3564_16210 ddab929f57ec5b5817fd38441d1a8bf9 534 Gene3D G3DSA:3.30.300.30 132 220 8.0E-9 T 13-10-2018 AP3564_16210 ddab929f57ec5b5817fd38441d1a8bf9 534 PIRSF PIRSF004862 1 534 1.1E-112 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AP3564_16210 ddab929f57ec5b5817fd38441d1a8bf9 534 Pfam PF01514 Secretory protein of YscJ/FliF family 32 220 4.7E-60 T 13-10-2018 IPR006182 Secretory protein YscJ/FliF AP3564_16210 ddab929f57ec5b5817fd38441d1a8bf9 534 PRINTS PR01009 Flagellar M-ring protein signature 268 286 1.3E-25 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AP3564_16210 ddab929f57ec5b5817fd38441d1a8bf9 534 PRINTS PR01009 Flagellar M-ring protein signature 198 216 1.3E-25 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AP3564_16210 ddab929f57ec5b5817fd38441d1a8bf9 534 PRINTS PR01009 Flagellar M-ring protein signature 122 140 1.3E-25 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AP3564_16210 ddab929f57ec5b5817fd38441d1a8bf9 534 PRINTS PR01009 Flagellar M-ring protein signature 154 168 1.3E-25 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AP3564_16210 ddab929f57ec5b5817fd38441d1a8bf9 534 PRINTS PR01009 Flagellar M-ring protein signature 348 372 1.3E-25 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AP3564_16210 ddab929f57ec5b5817fd38441d1a8bf9 534 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 1 534 2.0E-127 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AP3564_14120 057c68296fa50811f48cb3f878728cbe 276 Pfam PF00665 Integrase core domain 114 225 8.0E-24 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AP3564_14120 057c68296fa50811f48cb3f878728cbe 276 SUPERFAMILY SSF53098 107 269 4.43E-39 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_14120 057c68296fa50811f48cb3f878728cbe 276 Gene3D G3DSA:3.30.420.10 110 266 2.5E-16 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AP3564_14120 057c68296fa50811f48cb3f878728cbe 276 Pfam PF13276 HTH-like domain 41 91 4.8E-16 T 13-10-2018 IPR025948 HTH-like domain AP3564_12795 6e2fde7584734eaefc136e5cec7b5452 302 Hamap MF_00295 Homoserine O-succinyltransferase [metAS]. 31 299 44.826 T 13-10-2018 IPR033752 MetA family AP3564_12795 6e2fde7584734eaefc136e5cec7b5452 302 TIGRFAM TIGR01001 metA: homoserine O-succinyltransferase 1 300 1.3E-140 T 13-10-2018 IPR005697 Homoserine O-succinyltransferase MetA GO:0005737|GO:0008899|GO:0019281 AP3564_12795 6e2fde7584734eaefc136e5cec7b5452 302 SUPERFAMILY SSF52317 17 297 1.98E-108 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AP3564_12795 6e2fde7584734eaefc136e5cec7b5452 302 Pfam PF04204 Homoserine O-succinyltransferase 2 299 1.1E-145 T 13-10-2018 IPR033752 MetA family AP3564_12795 6e2fde7584734eaefc136e5cec7b5452 302 PIRSF PIRSF000450 1 302 3.8E-153 T 13-10-2018 IPR033752 MetA family AP3564_12795 6e2fde7584734eaefc136e5cec7b5452 302 ProDom PD037892 HOMOSERINE O-SUCCINYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIOSYNTHESIS TRANSSUCCINYLASE HTS METHIONINE O- AMINO-ACID 36 289 2.0E-115 T 13-10-2018 AP3564_12795 6e2fde7584734eaefc136e5cec7b5452 302 Gene3D G3DSA:3.40.50.880 1 300 2.2E-134 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AP3564_08330 68af6ca16ac9c731abc8534511067fd4 159 Gene3D G3DSA:1.20.120.450 1 158 1.2E-25 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes AP3564_08330 68af6ca16ac9c731abc8534511067fd4 159 SUPERFAMILY SSF109854 2 156 5.49E-16 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes AP3564_08330 68af6ca16ac9c731abc8534511067fd4 159 Pfam PF12867 DinB superfamily 12 152 2.3E-13 T 13-10-2018 IPR024775 DinB-like domain AP3564_11350 c90c7122127636255313b98972781ab7 185 Pfam PF04238 Protein of unknown function (DUF420) 52 181 1.8E-43 T 13-10-2018 IPR007352 Protein of unknown function DUF420 AP3564_15845 ef86eded64322e6f808d7e0e1bb75b06 519 Pfam PF01966 HD domain 336 427 2.3E-18 T 13-10-2018 IPR006674 HD domain AP3564_15845 ef86eded64322e6f808d7e0e1bb75b06 519 SMART SM00322 207 274 1.1E-6 T 13-10-2018 IPR004087 K Homology domain GO:0003676 AP3564_15845 ef86eded64322e6f808d7e0e1bb75b06 519 Hamap MF_00335 Ribonuclease Y [rny]. 4 519 26.289 T 13-10-2018 IPR017705 Ribonuclease Y GO:0003723|GO:0006402|GO:0016020 AP3564_15845 ef86eded64322e6f808d7e0e1bb75b06 519 SMART SM00471 331 437 3.2E-14 T 13-10-2018 IPR003607 HD/PDEase domain AP3564_15845 ef86eded64322e6f808d7e0e1bb75b06 519 Pfam PF00013 KH domain 212 266 3.4E-6 T 13-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 AP3564_15845 ef86eded64322e6f808d7e0e1bb75b06 519 SUPERFAMILY SSF109604 315 466 1.93E-31 T 13-10-2018 AP3564_15845 ef86eded64322e6f808d7e0e1bb75b06 519 Pfam PF12072 Domain of unknown function (DUF3552) 5 204 4.0E-79 T 13-10-2018 IPR022711 Ribonuclease Y, N-terminal AP3564_15845 ef86eded64322e6f808d7e0e1bb75b06 519 TIGRFAM TIGR03319 RNase_Y: ribonuclease Y 7 519 3.3E-249 T 13-10-2018 IPR017705 Ribonuclease Y GO:0003723|GO:0006402|GO:0016020 AP3564_15845 ef86eded64322e6f808d7e0e1bb75b06 519 Gene3D G3DSA:3.30.1370.10 207 320 8.6E-9 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 AP3564_15845 ef86eded64322e6f808d7e0e1bb75b06 519 SUPERFAMILY SSF54791 207 303 4.75E-16 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 AP3564_15845 ef86eded64322e6f808d7e0e1bb75b06 519 TIGRFAM TIGR00277 HDIG: HDIG domain 331 408 1.7E-25 T 13-10-2018 IPR006675 HDIG domain AP3564_15845 ef86eded64322e6f808d7e0e1bb75b06 519 Gene3D G3DSA:1.10.3210.10 321 472 9.1E-19 T 13-10-2018 AP3564_11135 4461802c800157ba84e31b4ca02dc862 432 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 237 417 3.5E-41 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AP3564_11135 4461802c800157ba84e31b4ca02dc862 432 Pfam PF11563 Protoglobin 28 179 1.7E-43 T 13-10-2018 AP3564_11135 4461802c800157ba84e31b4ca02dc862 432 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 206 235 3.3E-6 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AP3564_11135 4461802c800157ba84e31b4ca02dc862 432 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 319 348 3.3E-6 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AP3564_11135 4461802c800157ba84e31b4ca02dc862 432 SMART SM00283 188 432 9.8E-28 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AP3564_11135 4461802c800157ba84e31b4ca02dc862 432 SUPERFAMILY SSF58104 198 431 1.57E-56 T 13-10-2018 AP3564_11135 4461802c800157ba84e31b4ca02dc862 432 SUPERFAMILY SSF46458 26 173 2.75E-41 T 13-10-2018 IPR009050 Globin-like superfamily AP3564_11135 4461802c800157ba84e31b4ca02dc862 432 Gene3D G3DSA:1.10.490.10 22 171 8.7E-43 T 13-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 AP3564_11135 4461802c800157ba84e31b4ca02dc862 432 Gene3D G3DSA:1.10.287.950 172 432 1.7E-52 T 13-10-2018 AP3564_06445 e674d3a78301d8ec6f402772c5edcb25 498 Pfam PF02517 CAAX protease self-immunity 385 472 7.2E-9 T 13-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 AP3564_19360 ada6294205726141d1d56adb4c8965f5 312 TIGRFAM TIGR01763 MalateDH_bact: malate dehydrogenase, NAD-dependent 5 311 2.2E-165 T 13-10-2018 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 AP3564_19360 ada6294205726141d1d56adb4c8965f5 312 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 7 147 5.2E-42 T 13-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 AP3564_19360 ada6294205726141d1d56adb4c8965f5 312 PIRSF PIRSF000102 2 311 2.8E-105 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AP3564_19360 ada6294205726141d1d56adb4c8965f5 312 Gene3D G3DSA:3.40.50.720 1 149 2.0E-61 T 13-10-2018 AP3564_19360 ada6294205726141d1d56adb4c8965f5 312 SUPERFAMILY SSF51735 3 147 5.06E-48 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_19360 ada6294205726141d1d56adb4c8965f5 312 SUPERFAMILY SSF56327 150 311 2.02E-53 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AP3564_19360 ada6294205726141d1d56adb4c8965f5 312 Hamap MF_00487 Malate dehydrogenase [mdh]. 6 312 47.027 T 13-10-2018 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 AP3564_19360 ada6294205726141d1d56adb4c8965f5 312 PRINTS PR00086 L-lactate dehydrogenase signature 175 188 1.7E-30 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AP3564_19360 ada6294205726141d1d56adb4c8965f5 312 PRINTS PR00086 L-lactate dehydrogenase signature 121 141 1.7E-30 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AP3564_19360 ada6294205726141d1d56adb4c8965f5 312 PRINTS PR00086 L-lactate dehydrogenase signature 33 57 1.7E-30 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AP3564_19360 ada6294205726141d1d56adb4c8965f5 312 PRINTS PR00086 L-lactate dehydrogenase signature 7 31 1.7E-30 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AP3564_19360 ada6294205726141d1d56adb4c8965f5 312 PRINTS PR00086 L-lactate dehydrogenase signature 145 163 1.7E-30 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AP3564_19360 ada6294205726141d1d56adb4c8965f5 312 Gene3D G3DSA:3.90.110.10 150 310 5.7E-62 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AP3564_19360 ada6294205726141d1d56adb4c8965f5 312 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 151 309 1.9E-28 T 13-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 AP3564_13030 4264b85de5a52afbe983c98f7e24b498 194 SUPERFAMILY SSF50118 76 176 3.92E-9 T 13-10-2018 AP3564_13030 4264b85de5a52afbe983c98f7e24b498 194 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 74 173 5.0E-8 T 13-10-2018 IPR003477 mRNA interferase PemK-like GO:0003677 AP3564_13030 4264b85de5a52afbe983c98f7e24b498 194 Gene3D G3DSA:2.30.30.110 62 182 3.2E-9 T 13-10-2018 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor AP3564_15365 ac8c2398a9e3cc1dbcdaad89ae9e3a1c 278 SUPERFAMILY SSF51658 16 272 1.83E-52 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily AP3564_15365 ac8c2398a9e3cc1dbcdaad89ae9e3a1c 278 Gene3D G3DSA:3.20.20.150 5 277 3.1E-54 T 13-10-2018 AP3564_15365 ac8c2398a9e3cc1dbcdaad89ae9e3a1c 278 Pfam PF01261 Xylose isomerase-like TIM barrel 25 226 6.8E-31 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AP3564_16090 486b0f40ce97b61aa844c7442dc29968 157 SMART SM00260 6 143 1.7E-41 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AP3564_16090 486b0f40ce97b61aa844c7442dc29968 157 SUPERFAMILY SSF50341 7 146 4.58E-37 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 AP3564_16090 486b0f40ce97b61aa844c7442dc29968 157 Gene3D G3DSA:2.30.30.40 12 137 4.2E-42 T 13-10-2018 AP3564_16090 486b0f40ce97b61aa844c7442dc29968 157 Pfam PF01584 CheW-like domain 11 145 5.4E-36 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AP3564_16090 486b0f40ce97b61aa844c7442dc29968 157 Gene3D G3DSA:2.40.50.180 29 138 4.2E-42 T 13-10-2018 AP3564_08100 866784320ed18cdff5e05f507851f4b2 318 Gene3D G3DSA:3.40.50.2300 33 316 3.1E-101 T 13-10-2018 AP3564_08100 866784320ed18cdff5e05f507851f4b2 318 SUPERFAMILY SSF53822 33 315 9.43E-80 T 13-10-2018 IPR028082 Periplasmic binding protein-like I AP3564_08100 866784320ed18cdff5e05f507851f4b2 318 Pfam PF13407 Periplasmic binding protein domain 33 290 2.7E-63 T 13-10-2018 IPR025997 Periplasmic binding protein AP3564_08100 866784320ed18cdff5e05f507851f4b2 318 Gene3D G3DSA:3.40.50.2300 136 270 3.1E-101 T 13-10-2018 AP3564_09295 add0fc952724be45b25571f33b9e50b0 387 Pfam PF00155 Aminotransferase class I and II 32 380 1.9E-70 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AP3564_09295 add0fc952724be45b25571f33b9e50b0 387 Gene3D G3DSA:3.40.640.10 63 284 7.9E-131 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_09295 add0fc952724be45b25571f33b9e50b0 387 SUPERFAMILY SSF53383 7 386 6.52E-120 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_09295 add0fc952724be45b25571f33b9e50b0 387 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 234 247 - T 13-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 AP3564_09295 add0fc952724be45b25571f33b9e50b0 387 Gene3D G3DSA:3.90.1150.10 32 379 7.9E-131 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_05470 bb6a259150101fd02e7fe9901094ad3f 525 Pfam PF13007 Transposase C of IS166 homeodomain 36 105 2.0E-10 T 13-10-2018 IPR024463 Transposase TnpC, homeodomain AP3564_05470 bb6a259150101fd02e7fe9901094ad3f 525 Pfam PF03050 Transposase IS66 family 178 463 1.4E-101 T 13-10-2018 IPR004291 Transposase, IS66 AP3564_05470 bb6a259150101fd02e7fe9901094ad3f 525 Pfam PF13005 zinc-finger binding domain of transposase IS66 113 157 2.8E-12 T 13-10-2018 IPR024474 Zinc-finger binding domain of transposase IS66 AP3564_05470 bb6a259150101fd02e7fe9901094ad3f 525 Pfam PF13817 IS66 C-terminal element 470 510 1.9E-15 T 13-10-2018 IPR039552 Transposase IS66, C-terminal AP3564_14030 7d0f939c732efa823db29dca3e56a72a 377 Pfam PF13751 Transposase DDE domain 227 350 3.4E-29 T 13-10-2018 IPR025668 Transposase DDE domain AP3564_08460 0e0c520b79d2fcf88feaa5b4ef04ccf4 76 Pfam PF09964 Uncharacterized protein conserved in bacteria (DUF2198) 3 73 1.1E-25 T 13-10-2018 IPR019242 Protein of unknown function DUF2198 AP3564_07410 36bec1be32e1752c4e646f1bd8f10c84 458 Pfam PF00324 Amino acid permease 15 435 1.5E-93 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 AP3564_07410 36bec1be32e1752c4e646f1bd8f10c84 458 PIRSF PIRSF006060 1 458 3.7E-82 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 AP3564_07410 36bec1be32e1752c4e646f1bd8f10c84 458 Gene3D G3DSA:1.20.1740.10 8 457 4.5E-67 T 13-10-2018 AP3564_07410 36bec1be32e1752c4e646f1bd8f10c84 458 ProSitePatterns PS00218 Amino acid permeases signature. 40 70 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AP3564_15655 e6ad101718ee7396ddd1d661d6b8d057 248 Pfam PF01614 Bacterial transcriptional regulator 128 223 1.6E-19 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal AP3564_15655 e6ad101718ee7396ddd1d661d6b8d057 248 SUPERFAMILY SSF55781 64 235 4.58E-25 T 13-10-2018 AP3564_15655 e6ad101718ee7396ddd1d661d6b8d057 248 Pfam PF09339 IclR helix-turn-helix domain 8 58 1.1E-12 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AP3564_15655 e6ad101718ee7396ddd1d661d6b8d057 248 SMART SM00346 6 96 2.4E-13 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AP3564_15655 e6ad101718ee7396ddd1d661d6b8d057 248 Gene3D G3DSA:1.10.10.10 4 78 1.8E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_15655 e6ad101718ee7396ddd1d661d6b8d057 248 SUPERFAMILY SSF46785 7 77 4.17E-13 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_15655 e6ad101718ee7396ddd1d661d6b8d057 248 Gene3D G3DSA:3.30.450.40 79 247 6.0E-29 T 13-10-2018 IPR029016 GAF-like domain superfamily AP3564_04370 e9a7b4a57b71556d774d1ee8c0dbe7ca 195 Gene3D G3DSA:2.40.260.10 25 195 5.8E-42 T 13-10-2018 IPR023365 Sortase domain superfamily AP3564_04370 e9a7b4a57b71556d774d1ee8c0dbe7ca 195 TIGRFAM TIGR01076 sortase_fam: sortase 71 191 1.4E-33 T 13-10-2018 IPR005754 Sortase family AP3564_04370 e9a7b4a57b71556d774d1ee8c0dbe7ca 195 Pfam PF04203 Sortase family 73 193 6.6E-29 T 13-10-2018 IPR005754 Sortase family AP3564_04370 e9a7b4a57b71556d774d1ee8c0dbe7ca 195 SUPERFAMILY SSF63817 58 193 5.89E-34 T 13-10-2018 IPR023365 Sortase domain superfamily AP3564_02205 4f8a3944ce887c6fa9749647957eb97f 107 Gene3D G3DSA:3.30.70.100 8 100 3.0E-39 T 13-10-2018 AP3564_02205 4f8a3944ce887c6fa9749647957eb97f 107 Pfam PF03992 Antibiotic biosynthesis monooxygenase 24 82 2.7E-8 T 13-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain AP3564_02205 4f8a3944ce887c6fa9749647957eb97f 107 SUPERFAMILY SSF54909 9 102 3.14E-32 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel AP3564_04385 c98143641635c958a3eb1024b82e1027 329 Pfam PF00676 Dehydrogenase E1 component 46 319 2.6E-74 T 13-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 AP3564_04385 c98143641635c958a3eb1024b82e1027 329 Gene3D G3DSA:3.40.50.970 1 329 1.7E-111 T 13-10-2018 AP3564_04385 c98143641635c958a3eb1024b82e1027 329 SUPERFAMILY SSF52518 3 328 6.42E-90 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold AP3564_03115 2d88268eb4521db23eb46d7c8dbb68ba 200 Hamap MF_01911 HTH-type transcriptional regulator Hpr [hpr]. 2 185 48.804 T 13-10-2018 IPR023488 HTH-type transcriptional regulator Hpr AP3564_03115 2d88268eb4521db23eb46d7c8dbb68ba 200 Pfam PF01047 MarR family 44 101 2.0E-14 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_03115 2d88268eb4521db23eb46d7c8dbb68ba 200 SMART SM00347 37 137 9.9E-19 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_03115 2d88268eb4521db23eb46d7c8dbb68ba 200 ProSitePatterns PS01117 MarR-type HTH domain signature. 76 110 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site AP3564_03115 2d88268eb4521db23eb46d7c8dbb68ba 200 Gene3D G3DSA:1.10.10.10 2 167 3.3E-46 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_03115 2d88268eb4521db23eb46d7c8dbb68ba 200 SUPERFAMILY SSF46785 19 126 6.42E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_16375 ab54435f52595d2a048f20e775dc5379 333 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 1 328 8.2E-136 T 13-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 AP3564_16375 ab54435f52595d2a048f20e775dc5379 333 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 333 151.631 T 13-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 AP3564_16375 ab54435f52595d2a048f20e775dc5379 333 SUPERFAMILY SSF53659 1 328 7.81E-108 T 13-10-2018 AP3564_16375 ab54435f52595d2a048f20e775dc5379 333 Gene3D G3DSA:3.40.718.10 1 332 2.0E-139 T 13-10-2018 AP3564_16375 ab54435f52595d2a048f20e775dc5379 333 Pfam PF02504 Fatty acid synthesis protein 1 318 9.2E-125 T 13-10-2018 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 AP3564_16375 ab54435f52595d2a048f20e775dc5379 333 PIRSF PIRSF002465 1 333 9.8E-130 T 13-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 AP3564_04655 ab86280906f8c043b9d8f4591f676885 371 Pfam PF04346 Ethanolamine utilisation protein, EutH 3 351 2.3E-139 T 13-10-2018 IPR007441 Ethanolamine utilisation protein EutH GO:0016021|GO:0034228|GO:0034229 AP3564_04655 ab86280906f8c043b9d8f4591f676885 371 PIRSF PIRSF019466 1 370 7.0E-128 T 13-10-2018 IPR007441 Ethanolamine utilisation protein EutH GO:0016021|GO:0034228|GO:0034229 AP3564_10335 ad99d54df308ea6a92676cf955fbda99 132 Gene3D G3DSA:3.20.80.10 4 131 1.5E-23 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily AP3564_10335 ad99d54df308ea6a92676cf955fbda99 132 Pfam PF14526 Integron-associated effector binding protein 16 129 1.2E-9 T 13-10-2018 IPR029441 Integron-associated effector binding protein AP3564_17085 687e7ae5b470d239eebc4207b17cb4a3 224 SUPERFAMILY SSF81342 6 224 6.95E-60 T 13-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 AP3564_17085 687e7ae5b470d239eebc4207b17cb4a3 224 Pfam PF00033 Cytochrome b/b6/petB 40 219 2.5E-48 T 13-10-2018 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 AP3564_17085 687e7ae5b470d239eebc4207b17cb4a3 224 PIRSF PIRSF000032 2 224 2.5E-102 T 13-10-2018 AP3564_17085 687e7ae5b470d239eebc4207b17cb4a3 224 Gene3D G3DSA:1.20.810.10 1 224 4.1E-87 T 13-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 AP3564_00435 0e472a31a1ab2a7c3522878daddded06 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 223 2.2E-25 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AP3564_00435 0e472a31a1ab2a7c3522878daddded06 227 SUPERFAMILY SSF52172 3 176 7.68E-42 T 13-10-2018 IPR011006 CheY-like superfamily AP3564_00435 0e472a31a1ab2a7c3522878daddded06 227 Gene3D G3DSA:1.10.10.10 131 226 1.1E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_00435 0e472a31a1ab2a7c3522878daddded06 227 Gene3D G3DSA:3.40.50.2300 1 130 6.9E-38 T 13-10-2018 AP3564_00435 0e472a31a1ab2a7c3522878daddded06 227 Pfam PF00072 Response regulator receiver domain 5 115 8.9E-32 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_00435 0e472a31a1ab2a7c3522878daddded06 227 SMART SM00862 150 223 1.9E-25 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AP3564_00435 0e472a31a1ab2a7c3522878daddded06 227 SMART SM00448 3 115 8.2E-46 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_07805 cd97cec44aaba414515309d80eb9acd6 195 SUPERFAMILY SSF48498 80 178 1.66E-14 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AP3564_07805 cd97cec44aaba414515309d80eb9acd6 195 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 83 189 5.7E-13 T 13-10-2018 IPR039538 BetI-type transcriptional repressor, C-terminal AP3564_07805 cd97cec44aaba414515309d80eb9acd6 195 SUPERFAMILY SSF46689 2 78 5.64E-19 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_07805 cd97cec44aaba414515309d80eb9acd6 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 3.6E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_07805 cd97cec44aaba414515309d80eb9acd6 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 3.6E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_07805 cd97cec44aaba414515309d80eb9acd6 195 Gene3D G3DSA:1.10.357.10 1 193 9.4E-44 T 13-10-2018 AP3564_07805 cd97cec44aaba414515309d80eb9acd6 195 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 57 6.0E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_12230 31f11b90d19e1a83b8e73b4ee07eb86a 420 Gene3D G3DSA:3.40.640.10 22 283 3.1E-147 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_12230 31f11b90d19e1a83b8e73b4ee07eb86a 420 Gene3D G3DSA:3.90.1150.10 9 385 3.1E-147 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_12230 31f11b90d19e1a83b8e73b4ee07eb86a 420 PIRSF PIRSF000524 5 411 6.9E-138 T 13-10-2018 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661|Reactome: R-HSA-9033241 AP3564_12230 31f11b90d19e1a83b8e73b4ee07eb86a 420 Pfam PF00266 Aminotransferase class-V 35 357 2.5E-35 T 13-10-2018 IPR000192 Aminotransferase class V domain AP3564_12230 31f11b90d19e1a83b8e73b4ee07eb86a 420 SUPERFAMILY SSF53383 11 388 5.23E-100 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_01045 19d0ffe3a82d6a6f5d347bb72b364ac5 372 Pfam PF01385 Probable transposase 169 259 7.2E-13 T 13-10-2018 IPR001959 Probable transposase, IS891/IS1136/IS1341 AP3564_01045 19d0ffe3a82d6a6f5d347bb72b364ac5 372 Pfam PF07282 Putative transposase DNA-binding domain 290 359 2.9E-19 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal AP3564_01045 19d0ffe3a82d6a6f5d347bb72b364ac5 372 TIGRFAM TIGR01766 tspaseT_teng_C: transposase, IS605 OrfB family 238 317 2.5E-16 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal AP3564_04405 1bd0f12fdf8e53291a1238fb2a56412e 269 SUPERFAMILY SSF56059 59 256 4.07E-33 T 13-10-2018 AP3564_04405 1bd0f12fdf8e53291a1238fb2a56412e 269 Pfam PF08443 RimK-like ATP-grasp domain 93 250 1.4E-19 T 13-10-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 AP3564_04405 1bd0f12fdf8e53291a1238fb2a56412e 269 Gene3D G3DSA:3.30.470.80 148 257 1.7E-18 T 13-10-2018 AP3564_04710 d2a4a410d38d784737b6de452d33cc11 407 SUPERFAMILY SSF50494 85 300 8.62E-58 T 13-10-2018 IPR009003 Peptidase S1, PA clan AP3564_04710 d2a4a410d38d784737b6de452d33cc11 407 SMART SM00228 304 392 2.2E-10 T 13-10-2018 IPR001478 PDZ domain GO:0005515 AP3564_04710 d2a4a410d38d784737b6de452d33cc11 407 Gene3D G3DSA:2.40.10.10 185 306 8.1E-38 T 13-10-2018 AP3564_04710 d2a4a410d38d784737b6de452d33cc11 407 Pfam PF13365 Trypsin-like peptidase domain 119 266 8.9E-31 T 13-10-2018 AP3564_04710 d2a4a410d38d784737b6de452d33cc11 407 Gene3D G3DSA:2.30.42.10 307 406 7.7E-25 T 13-10-2018 AP3564_04710 d2a4a410d38d784737b6de452d33cc11 407 PRINTS PR00834 HtrA/DegQ protease family signature 237 254 6.0E-35 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AP3564_04710 d2a4a410d38d784737b6de452d33cc11 407 PRINTS PR00834 HtrA/DegQ protease family signature 259 276 6.0E-35 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AP3564_04710 d2a4a410d38d784737b6de452d33cc11 407 PRINTS PR00834 HtrA/DegQ protease family signature 131 143 6.0E-35 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AP3564_04710 d2a4a410d38d784737b6de452d33cc11 407 PRINTS PR00834 HtrA/DegQ protease family signature 193 217 6.0E-35 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AP3564_04710 d2a4a410d38d784737b6de452d33cc11 407 PRINTS PR00834 HtrA/DegQ protease family signature 152 172 6.0E-35 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AP3564_04710 d2a4a410d38d784737b6de452d33cc11 407 PRINTS PR00834 HtrA/DegQ protease family signature 350 362 6.0E-35 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AP3564_04710 d2a4a410d38d784737b6de452d33cc11 407 Gene3D G3DSA:2.40.10.10 73 184 1.4E-24 T 13-10-2018 AP3564_04710 d2a4a410d38d784737b6de452d33cc11 407 Pfam PF13180 PDZ domain 304 401 4.5E-19 T 13-10-2018 IPR001478 PDZ domain GO:0005515 AP3564_04710 d2a4a410d38d784737b6de452d33cc11 407 SUPERFAMILY SSF50156 285 401 8.02E-21 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 AP3564_17305 45e99b56fdf95a558d517047ebb159d0 223 PIRSF PIRSF016933 1 220 3.8E-88 T 13-10-2018 IPR023596 Peptidase PrsW, archaeal/bacterial GO:0008233 AP3564_17305 45e99b56fdf95a558d517047ebb159d0 223 Pfam PF13367 Protease prsW family 28 199 1.6E-34 T 13-10-2018 IPR026898 Protease PrsW GO:0008233 AP3564_04260 32e401325989790a0c3a279a7b181889 321 SUPERFAMILY SSF81464 21 121 1.62E-23 T 13-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_04260 32e401325989790a0c3a279a7b181889 321 PIRSF PIRSF000292 3 319 5.9E-101 T 13-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 AP3564_04260 32e401325989790a0c3a279a7b181889 321 TIGRFAM TIGR01432 QOXA: cytochrome aa3 quinol oxidase, subunit II 18 243 4.5E-105 T 13-10-2018 IPR006332 Quinol oxidase subunit II GO:0009486|GO:0016021|GO:0016682|GO:0055114 AP3564_04260 32e401325989790a0c3a279a7b181889 321 Gene3D G3DSA:2.60.40.420 118 276 6.2E-34 T 13-10-2018 IPR008972 Cupredoxin AP3564_04260 32e401325989790a0c3a279a7b181889 321 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 51 113 4.8E-10 T 13-10-2018 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_04260 32e401325989790a0c3a279a7b181889 321 SUPERFAMILY SSF49503 130 271 3.8E-36 T 13-10-2018 IPR008972 Cupredoxin AP3564_04260 32e401325989790a0c3a279a7b181889 321 Gene3D G3DSA:1.10.287.90 32 117 3.5E-30 T 13-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_05505 1e918f8d404dd2f69242b41fe1ad7d81 250 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 11 92 1.8E-33 T 13-10-2018 IPR010627 Peptidase A24A, N-terminal AP3564_05505 1e918f8d404dd2f69242b41fe1ad7d81 250 Pfam PF01478 Type IV leader peptidase family 105 207 1.6E-20 T 13-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 AP3564_09510 9932e6d4b49a5a81c94a1e08fc07fd71 147 Pfam PF00210 Ferritin-like domain 10 147 3.1E-33 T 13-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 AP3564_09510 9932e6d4b49a5a81c94a1e08fc07fd71 147 ProSitePatterns PS00819 Dps protein family signature 2. 54 68 - T 13-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 AP3564_09510 9932e6d4b49a5a81c94a1e08fc07fd71 147 PIRSF PIRSF005900 1 147 9.9E-49 T 13-10-2018 IPR002177 DNA-binding protein Dps AP3564_09510 9932e6d4b49a5a81c94a1e08fc07fd71 147 Gene3D G3DSA:1.20.1260.10 2 146 3.3E-54 T 13-10-2018 IPR012347 Ferritin-like AP3564_09510 9932e6d4b49a5a81c94a1e08fc07fd71 147 ProSitePatterns PS00818 Dps protein family signature 1. 28 44 - T 13-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 AP3564_09510 9932e6d4b49a5a81c94a1e08fc07fd71 147 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 28 44 4.8E-15 T 13-10-2018 IPR002177 DNA-binding protein Dps AP3564_09510 9932e6d4b49a5a81c94a1e08fc07fd71 147 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 52 68 4.8E-15 T 13-10-2018 IPR002177 DNA-binding protein Dps AP3564_09510 9932e6d4b49a5a81c94a1e08fc07fd71 147 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 123 141 4.8E-15 T 13-10-2018 IPR002177 DNA-binding protein Dps AP3564_09510 9932e6d4b49a5a81c94a1e08fc07fd71 147 SUPERFAMILY SSF47240 5 146 1.32E-46 T 13-10-2018 IPR009078 Ferritin-like superfamily AP3564_14945 c4e92503c9f5849c1f4cd0eb40ceee63 318 Pfam PF12146 Serine aminopeptidase, S33 54 271 9.9E-17 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 AP3564_14945 c4e92503c9f5849c1f4cd0eb40ceee63 318 SUPERFAMILY SSF53474 4 311 4.3E-35 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold AP3564_16850 6bea0f1176d6d9b3041d61b2a373aa07 299 TIGRFAM TIGR02737 caa3_CtaG: cytochrome c oxidase assembly factor CtaG 3 282 3.0E-116 T 13-10-2018 IPR014108 Cytochrome c oxidase caa3 type assembly factor CtaG AP3564_16850 6bea0f1176d6d9b3041d61b2a373aa07 299 Pfam PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) 25 280 6.6E-56 T 13-10-2018 IPR019108 Cytochrome c oxidase caa3-type, assembly factor CtaG-related AP3564_18320 9fe07e9f05d77015f07a0b1b61677285 162 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 9 153 27.449 T 13-10-2018 IPR003791 Protein of unknown function UPF0178 AP3564_18320 9fe07e9f05d77015f07a0b1b61677285 162 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 24 151 1.2E-37 T 13-10-2018 IPR003791 Protein of unknown function UPF0178 AP3564_14090 c4c64a36969329888fea67975d7fc21a 100 Pfam PF12840 Helix-turn-helix domain 5 78 2.2E-12 T 13-10-2018 AP3564_14090 c4c64a36969329888fea67975d7fc21a 100 Gene3D G3DSA:1.10.10.10 1 99 6.4E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_14090 c4c64a36969329888fea67975d7fc21a 100 SMART SM00418 5 98 5.7E-16 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AP3564_14090 c4c64a36969329888fea67975d7fc21a 100 SUPERFAMILY SSF46785 2 97 4.94E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_03130 e10b71229b7ac54ddd0c150e909aa542 175 Pfam PF17099 Tryptophan transporter TrpP 3 166 1.1E-53 T 13-10-2018 IPR031360 Tryptophan transporter TrpP AP3564_03130 e10b71229b7ac54ddd0c150e909aa542 175 Gene3D G3DSA:1.10.1760.20 1 173 5.1E-8 T 13-10-2018 AP3564_03130 e10b71229b7ac54ddd0c150e909aa542 175 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 1 170 6.0E-39 T 13-10-2018 AP3564_13815 b4ada3a18d69a7cfaa1ccae4134c324c 425 Pfam PF13416 Bacterial extracellular solute-binding protein 65 364 9.3E-54 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein AP3564_13815 b4ada3a18d69a7cfaa1ccae4134c324c 425 Gene3D G3DSA:3.40.190.10 60 378 1.2E-128 T 13-10-2018 AP3564_13815 b4ada3a18d69a7cfaa1ccae4134c324c 425 Gene3D G3DSA:3.40.190.10 156 410 1.2E-128 T 13-10-2018 AP3564_13815 b4ada3a18d69a7cfaa1ccae4134c324c 425 PRINTS PR00181 Maltose binding protein signature 252 271 7.4E-12 T 13-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 AP3564_13815 b4ada3a18d69a7cfaa1ccae4134c324c 425 PRINTS PR00181 Maltose binding protein signature 88 106 7.4E-12 T 13-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 AP3564_13815 b4ada3a18d69a7cfaa1ccae4134c324c 425 PRINTS PR00181 Maltose binding protein signature 147 166 7.4E-12 T 13-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 AP3564_13815 b4ada3a18d69a7cfaa1ccae4134c324c 425 PRINTS PR00181 Maltose binding protein signature 168 187 7.4E-12 T 13-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 AP3564_13815 b4ada3a18d69a7cfaa1ccae4134c324c 425 PRINTS PR00181 Maltose binding protein signature 378 397 7.4E-12 T 13-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 AP3564_13815 b4ada3a18d69a7cfaa1ccae4134c324c 425 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 150 167 - T 13-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 AP3564_13815 b4ada3a18d69a7cfaa1ccae4134c324c 425 SUPERFAMILY SSF53850 47 414 3.62E-93 T 13-10-2018 AP3564_16200 c084b50803a7b28214920806bb976dc7 253 TIGRFAM TIGR03825 FliH_bacil: flagellar assembly protein FliH 4 252 1.5E-76 T 13-10-2018 IPR022524 Flagellar assembly FliH, Bacilli AP3564_16200 c084b50803a7b28214920806bb976dc7 253 Pfam PF02108 Flagellar assembly protein FliH 119 242 1.3E-16 T 13-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE AP3564_16200 c084b50803a7b28214920806bb976dc7 253 SUPERFAMILY SSF160527 142 252 5.36E-5 T 13-10-2018 AP3564_18880 31ed454ae4619e07c0a6184a95d682db 102 SUPERFAMILY SSF141091 1 101 4.32E-42 T 13-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_18880 31ed454ae4619e07c0a6184a95d682db 102 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 102 28.569 T 13-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_18880 31ed454ae4619e07c0a6184a95d682db 102 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 100 4.8E-44 T 13-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_18880 31ed454ae4619e07c0a6184a95d682db 102 ProSitePatterns PS01169 Ribosomal protein L21 signature. 71 93 - T 13-10-2018 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_18880 31ed454ae4619e07c0a6184a95d682db 102 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 3.8E-42 T 13-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_12285 7ae64cd0b734587ea18a7b61ad51f8d6 1167 Pfam PF00271 Helicase conserved C-terminal domain 928 974 6.7E-8 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_12285 7ae64cd0b734587ea18a7b61ad51f8d6 1167 SMART SM00490 890 976 0.0011 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_12285 7ae64cd0b734587ea18a7b61ad51f8d6 1167 SUPERFAMILY SSF52540 505 989 5.42E-18 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_12285 7ae64cd0b734587ea18a7b61ad51f8d6 1167 Gene3D G3DSA:3.40.50.300 898 1015 5.1E-11 T 13-10-2018 AP3564_07405 b65a339e3b939bda21053a2ed4ce42c2 213 TIGRFAM TIGR01076 sortase_fam: sortase 84 201 4.7E-29 T 13-10-2018 IPR005754 Sortase family AP3564_07405 b65a339e3b939bda21053a2ed4ce42c2 213 Gene3D G3DSA:2.40.260.10 40 213 1.1E-43 T 13-10-2018 IPR023365 Sortase domain superfamily AP3564_07405 b65a339e3b939bda21053a2ed4ce42c2 213 SUPERFAMILY SSF63817 72 208 7.59E-36 T 13-10-2018 IPR023365 Sortase domain superfamily AP3564_07405 b65a339e3b939bda21053a2ed4ce42c2 213 Pfam PF04203 Sortase family 87 207 3.2E-27 T 13-10-2018 IPR005754 Sortase family AP3564_05230 21103688a446c1f8fbea423615df1871 206 Pfam PF09578 Spore cortex protein YabQ (Spore_YabQ) 11 87 1.5E-21 T 13-10-2018 IPR019074 Spore cortex biosynthesis protein, YabQ-like AP3564_05230 21103688a446c1f8fbea423615df1871 206 TIGRFAM TIGR02893 spore_yabQ: spore cortex biosynthesis protein YabQ 2 129 3.4E-44 T 13-10-2018 IPR014242 Spore cortex biosynthesis protein, YabQ AP3564_01320 a3780d1b826a0ddda5d5dc9c9e6a1d35 400 Gene3D G3DSA:1.20.1250.20 10 192 1.3E-27 T 13-10-2018 AP3564_01320 a3780d1b826a0ddda5d5dc9c9e6a1d35 400 Pfam PF07690 Major Facilitator Superfamily 18 246 9.6E-28 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AP3564_01320 a3780d1b826a0ddda5d5dc9c9e6a1d35 400 Gene3D G3DSA:1.20.1250.20 231 400 2.9E-21 T 13-10-2018 AP3564_01320 a3780d1b826a0ddda5d5dc9c9e6a1d35 400 SUPERFAMILY SSF103473 11 397 1.83E-58 T 13-10-2018 IPR036259 MFS transporter superfamily AP3564_01320 a3780d1b826a0ddda5d5dc9c9e6a1d35 400 PRINTS PR01035 Tetracycline resistance protein signature 49 68 1.9E-8 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AP3564_01320 a3780d1b826a0ddda5d5dc9c9e6a1d35 400 PRINTS PR01035 Tetracycline resistance protein signature 109 130 1.9E-8 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AP3564_01320 a3780d1b826a0ddda5d5dc9c9e6a1d35 400 PRINTS PR01035 Tetracycline resistance protein signature 168 188 1.9E-8 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AP3564_01320 a3780d1b826a0ddda5d5dc9c9e6a1d35 400 PRINTS PR01035 Tetracycline resistance protein signature 337 360 1.9E-8 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AP3564_01320 a3780d1b826a0ddda5d5dc9c9e6a1d35 400 PRINTS PR01035 Tetracycline resistance protein signature 276 297 1.9E-8 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AP3564_12505 5fb93e3bfd03ab3e84d6130a507dfef7 393 SUPERFAMILY SSF53098 31 344 2.2E-21 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_12505 5fb93e3bfd03ab3e84d6130a507dfef7 393 Gene3D G3DSA:3.90.350.10 212 327 3.1E-5 T 13-10-2018 IPR014736 Transposase, Tn5-like, core AP3564_12505 5fb93e3bfd03ab3e84d6130a507dfef7 393 Pfam PF01609 Transposase DDE domain 102 344 1.6E-18 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_16825 c3602db8b9fe5fea798caf7dd7c71938 78 Pfam PF14003 YlbE-like protein 13 73 2.5E-25 T 13-10-2018 IPR025613 YlbE-like protein AP3564_19140 bd32fde9d791b9b1b475179e02d66bce 202 SUPERFAMILY SSF81343 4 201 8.76E-61 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AP3564_19140 bd32fde9d791b9b1b475179e02d66bce 202 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 91 193 4.0E-12 T 13-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AP3564_19140 bd32fde9d791b9b1b475179e02d66bce 202 PIRSF PIRSF000170 1 202 1.5E-100 T 13-10-2018 IPR016002 Succinate dehydrogenase cytochrome b558 subunit, Firmicute AP3564_19140 bd32fde9d791b9b1b475179e02d66bce 202 Gene3D G3DSA:1.20.1300.10 2 202 1.6E-45 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AP3564_19140 bd32fde9d791b9b1b475179e02d66bce 202 TIGRFAM TIGR02046 sdhC_b558_fam: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family 6 202 3.5E-56 T 13-10-2018 IPR011138 Succinate dehydrogenase cytochrome b558 subunit AP3564_04700 2518a124d878c930a8a95e8491408904 159 PIRSF PIRSF004505 1 159 5.9E-55 T 13-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 AP3564_04700 2518a124d878c930a8a95e8491408904 159 Gene3D G3DSA:3.40.1280.10 1 159 8.3E-69 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AP3564_04700 2518a124d878c930a8a95e8491408904 159 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 159 31.652 T 13-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 AP3564_04700 2518a124d878c930a8a95e8491408904 159 Pfam PF02590 Predicted SPOUT methyltransferase 2 158 6.0E-61 T 13-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 AP3564_04700 2518a124d878c930a8a95e8491408904 159 SUPERFAMILY SSF75217 2 157 2.22E-62 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases AP3564_04700 2518a124d878c930a8a95e8491408904 159 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 2 159 3.0E-69 T 13-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 AP3564_10135 bda408a1a750e514b0af11486bf74674 218 Pfam PF03741 Integral membrane protein TerC family 12 181 6.1E-44 T 13-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 AP3564_10135 bda408a1a750e514b0af11486bf74674 218 TIGRFAM TIGR03717 R_switched_YjbE: integral membrane protein, YjbE family 9 182 2.0E-68 T 13-10-2018 IPR022301 Integral membrane protein YjbE AP3564_02075 ac8f447e876dca1ebf363f25920fe3ee 451 Pfam PF00296 Luciferase-like monooxygenase 18 389 3.6E-69 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AP3564_02075 ac8f447e876dca1ebf363f25920fe3ee 451 Gene3D G3DSA:3.20.20.30 2 449 2.4E-166 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AP3564_02075 ac8f447e876dca1ebf363f25920fe3ee 451 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 10 433 8.7E-183 T 13-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 AP3564_02075 ac8f447e876dca1ebf363f25920fe3ee 451 SUPERFAMILY SSF51679 5 439 2.36E-142 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AP3564_02075 ac8f447e876dca1ebf363f25920fe3ee 451 PIRSF PIRSF000337 4 446 2.1E-168 T 13-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 AP3564_04345 25bc74226271d25ae4dcfe21558e646d 257 Gene3D G3DSA:3.40.50.300 5 256 2.7E-61 T 13-10-2018 AP3564_04345 25bc74226271d25ae4dcfe21558e646d 257 Pfam PF00005 ABC transporter 22 180 6.9E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_04345 25bc74226271d25ae4dcfe21558e646d 257 SUPERFAMILY SSF52540 6 249 3.88E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_04345 25bc74226271d25ae4dcfe21558e646d 257 SMART SM00382 31 227 6.0E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_11335 eb1b75a665c264045b9b077bef68ea83 279 TIGRFAM TIGR01121 D_amino_aminoT: D-amino-acid transaminase 5 276 1.7E-99 T 13-10-2018 IPR005784 D-amino acid aminotransferase GO:0008483|GO:0030170|GO:0046416 KEGG: 00310+2.6.1.21|KEGG: 00330+2.6.1.21|KEGG: 00360+2.6.1.21|KEGG: 00472+2.6.1.21|KEGG: 00473+2.6.1.21 AP3564_11335 eb1b75a665c264045b9b077bef68ea83 279 Gene3D G3DSA:3.20.10.10 121 279 1.8E-57 T 13-10-2018 AP3564_11335 eb1b75a665c264045b9b077bef68ea83 279 ProSitePatterns PS00770 Aminotransferases class-IV signature. 177 206 - T 13-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 AP3564_11335 eb1b75a665c264045b9b077bef68ea83 279 Gene3D G3DSA:3.30.470.10 1 116 8.0E-34 T 13-10-2018 AP3564_11335 eb1b75a665c264045b9b077bef68ea83 279 SUPERFAMILY SSF56752 3 274 3.4E-78 T 13-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 AP3564_11335 eb1b75a665c264045b9b077bef68ea83 279 Pfam PF01063 Amino-transferase class IV 30 249 7.1E-50 T 13-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 AP3564_16305 7ecb1873a3d87e497dc4b7eb2fe6fa85 244 SUPERFAMILY SSF75217 1 242 2.98E-104 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases AP3564_16305 7ecb1873a3d87e497dc4b7eb2fe6fa85 244 Gene3D G3DSA:1.10.1270.20 166 244 1.5E-37 T 13-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AP3564_16305 7ecb1873a3d87e497dc4b7eb2fe6fa85 244 Gene3D G3DSA:3.40.1280.10 1 165 2.0E-70 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AP3564_16305 7ecb1873a3d87e497dc4b7eb2fe6fa85 244 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 244 116.065 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AP3564_16305 7ecb1873a3d87e497dc4b7eb2fe6fa85 244 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 234 2.1E-105 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AP3564_16305 7ecb1873a3d87e497dc4b7eb2fe6fa85 244 PIRSF PIRSF000386 1 244 2.1E-109 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AP3564_16305 7ecb1873a3d87e497dc4b7eb2fe6fa85 244 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 221 5.0E-78 T 13-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AP3564_18435 c513528e8edcca820940c63a20df14fe 313 TIGRFAM TIGR00704 NaPi_cotrn_rel: Na/Pi-cotransporter II-related protein 1 302 7.4E-71 T 13-10-2018 IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein GO:0016020 AP3564_18435 c513528e8edcca820940c63a20df14fe 313 Pfam PF02690 Na+/Pi-cotransporter 13 146 2.9E-36 T 13-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 AP3564_18435 c513528e8edcca820940c63a20df14fe 313 Pfam PF02690 Na+/Pi-cotransporter 159 252 3.3E-15 T 13-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 AP3564_09480 a940d18e397d58e983d7b6dcd47d6f91 269 SUPERFAMILY SSF53474 3 264 9.97E-56 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold AP3564_09480 a940d18e397d58e983d7b6dcd47d6f91 269 Gene3D G3DSA:3.40.50.1820 3 265 3.1E-66 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold AP3564_09480 a940d18e397d58e983d7b6dcd47d6f91 269 TIGRFAM TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 17 264 2.0E-89 T 13-10-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 AP3564_09480 a940d18e397d58e983d7b6dcd47d6f91 269 Hamap MF_01660 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [menH]. 13 264 36.64 T 13-10-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 AP3564_09480 a940d18e397d58e983d7b6dcd47d6f91 269 PRINTS PR00111 Alpha/beta hydrolase fold signature 101 114 1.1E-8 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AP3564_09480 a940d18e397d58e983d7b6dcd47d6f91 269 PRINTS PR00111 Alpha/beta hydrolase fold signature 41 56 1.1E-8 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AP3564_09480 a940d18e397d58e983d7b6dcd47d6f91 269 PRINTS PR00111 Alpha/beta hydrolase fold signature 87 100 1.1E-8 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AP3564_09480 a940d18e397d58e983d7b6dcd47d6f91 269 Pfam PF00561 alpha/beta hydrolase fold 18 250 8.6E-29 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AP3564_06650 2b644074597ecc630c6804306b8190c5 214 Pfam PF13460 NAD(P)H-binding 7 189 6.9E-46 T 13-10-2018 IPR016040 NAD(P)-binding domain AP3564_06650 2b644074597ecc630c6804306b8190c5 214 Gene3D G3DSA:3.40.50.720 3 214 9.3E-50 T 13-10-2018 AP3564_06650 2b644074597ecc630c6804306b8190c5 214 SUPERFAMILY SSF51735 2 205 2.49E-37 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_09325 05c3e2bdaedd62fe1988bfba29f7883d 84 Pfam PF11458 Membrane-integrating protein Mistic 1 83 8.1E-25 T 13-10-2018 IPR021078 Membrane-integrating protein Mistic AP3564_09325 05c3e2bdaedd62fe1988bfba29f7883d 84 Gene3D G3DSA:1.10.220.90 1 75 2.0E-29 T 13-10-2018 IPR038193 Mistic superfamily AP3564_09215 2afc8e30ee80dc0de97a813519245a77 121 TIGRFAM TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit 13 108 3.3E-33 T 13-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 AP3564_09215 2afc8e30ee80dc0de97a813519245a77 121 Pfam PF03334 Na+/H+ antiporter subunit 13 94 7.0E-29 T 13-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 AP3564_02795 2e883c6568bba95ee53ed865882db62a 258 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 52 241 3.3E-50 T 13-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_02795 2e883c6568bba95ee53ed865882db62a 258 Hamap MF_01811 Membrane protein insertase YidC [yidC]. 1 245 27.59 T 13-10-2018 IPR023060 Membrane insertase YidC/YidC1/YidC2, Firmicutes GO:0016021|GO:0032977 AP3564_02795 2e883c6568bba95ee53ed865882db62a 258 Pfam PF02096 60Kd inner membrane protein 53 241 6.3E-46 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AP3564_02795 2e883c6568bba95ee53ed865882db62a 258 PRINTS PR00701 60kDa inner membrane protein signature 124 147 3.2E-5 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AP3564_02795 2e883c6568bba95ee53ed865882db62a 258 PRINTS PR00701 60kDa inner membrane protein signature 208 231 3.2E-5 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AP3564_06210 796aa93fe03a92d24be42dc044c7e884 96 Pfam PF01527 Transposase 3 74 5.9E-13 T 13-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AP3564_06210 796aa93fe03a92d24be42dc044c7e884 96 Gene3D G3DSA:1.10.10.60 9 94 2.0E-13 T 13-10-2018 AP3564_06210 796aa93fe03a92d24be42dc044c7e884 96 SUPERFAMILY SSF46689 4 94 3.94E-21 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_09795 08ebdcb850b813383417a66f56a47a4f 173 PIRSF PIRSF011560 1 171 3.0E-48 T 13-10-2018 IPR010461 Competence protein ComK GO:0030420 AP3564_09795 08ebdcb850b813383417a66f56a47a4f 173 Pfam PF06338 ComK protein 1 140 4.7E-50 T 13-10-2018 IPR010461 Competence protein ComK GO:0030420 AP3564_10065 47631134fede47b3781cf0a1a0864b71 59 Pfam PF14168 YjzC-like protein 1 55 1.1E-29 T 13-10-2018 IPR025549 YjzC-like protein AP3564_00810 fed8faaf26d9203efdad49909c88d0cc 228 Hamap MF_00112 Geranylgeranylglyceryl phosphate synthase [pcrB]. 3 226 28.365 T 13-10-2018 IPR008205 Geranylgeranylglyceryl phosphate synthase/Heptaprenylglyceryl phosphate synthase GO:0016765 AP3564_00810 fed8faaf26d9203efdad49909c88d0cc 228 SUPERFAMILY SSF51395 4 223 4.39E-54 T 13-10-2018 AP3564_00810 fed8faaf26d9203efdad49909c88d0cc 228 TIGRFAM TIGR01768 GGGP-family: geranylgeranylglyceryl phosphate synthase family protein 8 223 3.1E-72 T 13-10-2018 IPR008205 Geranylgeranylglyceryl phosphate synthase/Heptaprenylglyceryl phosphate synthase GO:0016765 AP3564_00810 fed8faaf26d9203efdad49909c88d0cc 228 Gene3D G3DSA:3.20.20.390 1 228 1.6E-96 T 13-10-2018 IPR038597 GGGP/HepGP synthase superfamily AP3564_00810 fed8faaf26d9203efdad49909c88d0cc 228 Pfam PF01884 PcrB family 2 226 1.3E-86 T 13-10-2018 IPR008205 Geranylgeranylglyceryl phosphate synthase/Heptaprenylglyceryl phosphate synthase GO:0016765 AP3564_00650 3cdeea8b70b48eb806f42757cdab73d6 350 Pfam PF02653 Branched-chain amino acid transport system / permease component 36 309 9.1E-43 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AP3564_12905 1f192133c9d16d8b201cbd0ca2636876 401 PRINTS PR01035 Tetracycline resistance protein signature 163 183 1.3E-19 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AP3564_12905 1f192133c9d16d8b201cbd0ca2636876 401 PRINTS PR01035 Tetracycline resistance protein signature 135 157 1.3E-19 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AP3564_12905 1f192133c9d16d8b201cbd0ca2636876 401 PRINTS PR01035 Tetracycline resistance protein signature 20 36 1.3E-19 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AP3564_12905 1f192133c9d16d8b201cbd0ca2636876 401 PRINTS PR01035 Tetracycline resistance protein signature 340 363 1.3E-19 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AP3564_12905 1f192133c9d16d8b201cbd0ca2636876 401 Gene3D G3DSA:1.20.1250.20 3 389 8.5E-68 T 13-10-2018 AP3564_12905 1f192133c9d16d8b201cbd0ca2636876 401 SUPERFAMILY SSF103473 5 392 1.83E-71 T 13-10-2018 IPR036259 MFS transporter superfamily AP3564_12905 1f192133c9d16d8b201cbd0ca2636876 401 Pfam PF07690 Major Facilitator Superfamily 14 269 7.5E-46 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AP3564_03920 deef9db838f2d8480535901a42f1603c 127 Pfam PF03899 ATP synthase I chain 14 105 7.7E-18 T 13-10-2018 IPR005598 ATP synthase protein I AP3564_03920 deef9db838f2d8480535901a42f1603c 127 ProDom PD020811 ATP SYNTHASE I ION HYDROLASE SUBUNIT I CF0 MEMBRANE HYDROGEN 23 114 1.0E-27 T 13-10-2018 AP3564_19115 ab46915ce3a78e35280fd597005b5f42 272 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 70 78 - T 13-10-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AP3564_19115 ab46915ce3a78e35280fd597005b5f42 272 Hamap MF_00258 Glutamate racemase [murI]. 3 256 41.51 T 13-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AP3564_19115 ab46915ce3a78e35280fd597005b5f42 272 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 180 190 - T 13-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AP3564_19115 ab46915ce3a78e35280fd597005b5f42 272 SUPERFAMILY SSF53681 4 107 3.14E-36 T 13-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AP3564_19115 ab46915ce3a78e35280fd597005b5f42 272 Gene3D G3DSA:3.40.50.1860 5 254 2.7E-99 T 13-10-2018 AP3564_19115 ab46915ce3a78e35280fd597005b5f42 272 Pfam PF01177 Asp/Glu/Hydantoin racemase 5 215 1.3E-39 T 13-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AP3564_19115 ab46915ce3a78e35280fd597005b5f42 272 Gene3D G3DSA:3.40.50.1860 95 207 2.7E-99 T 13-10-2018 AP3564_19115 ab46915ce3a78e35280fd597005b5f42 272 SUPERFAMILY SSF53681 109 263 2.35E-40 T 13-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AP3564_19115 ab46915ce3a78e35280fd597005b5f42 272 TIGRFAM TIGR00067 glut_race: glutamate racemase 5 254 2.4E-91 T 13-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AP3564_10870 fe1e05e6621e0ff0bef550ac09ae8933 118 Pfam PF05717 IS66 Orf2 like protein 9 107 6.2E-42 T 13-10-2018 IPR008878 Transposase IS66, Orf2 AP3564_08920 fcbde25af998f468f0794270d302687b 116 Pfam PF01751 Toprim domain 9 77 6.1E-7 T 13-10-2018 IPR006171 TOPRIM domain AP3564_08920 fcbde25af998f468f0794270d302687b 116 SUPERFAMILY SSF110455 4 113 1.12E-34 T 13-10-2018 AP3564_08920 fcbde25af998f468f0794270d302687b 116 SMART SM00493 7 81 1.4E-8 T 13-10-2018 IPR006171 TOPRIM domain AP3564_08920 fcbde25af998f468f0794270d302687b 116 Gene3D G3DSA:3.40.1360.20 3 116 1.6E-43 T 13-10-2018 AP3564_04210 d2aaba9c9249f99e7969e1c80e548143 315 SUPERFAMILY SSF51735 1 311 4.89E-40 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_04210 d2aaba9c9249f99e7969e1c80e548143 315 Gene3D G3DSA:3.40.50.720 1 314 1.0E-33 T 13-10-2018 AP3564_04210 d2aaba9c9249f99e7969e1c80e548143 315 Pfam PF13460 NAD(P)H-binding 8 159 4.6E-15 T 13-10-2018 IPR016040 NAD(P)-binding domain AP3564_04835 a8a34a2fa4525116b1b0ed58cdd68054 461 Gene3D G3DSA:3.30.1360.120 1 126 4.7E-50 T 13-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 AP3564_04835 a8a34a2fa4525116b1b0ed58cdd68054 461 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 227 375 4.1E-28 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AP3564_04835 a8a34a2fa4525116b1b0ed58cdd68054 461 SUPERFAMILY SSF116878 127 461 6.54E-51 T 13-10-2018 AP3564_04835 a8a34a2fa4525116b1b0ed58cdd68054 461 Gene3D G3DSA:3.40.50.300 224 389 6.6E-110 T 13-10-2018 AP3564_04835 a8a34a2fa4525116b1b0ed58cdd68054 461 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 4 461 34.911 T 13-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 AP3564_04835 a8a34a2fa4525116b1b0ed58cdd68054 461 Pfam PF10396 GTP-binding protein TrmE N-terminus 5 126 7.4E-42 T 13-10-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 AP3564_04835 a8a34a2fa4525116b1b0ed58cdd68054 461 Gene3D G3DSA:1.20.120.430 127 461 6.6E-110 T 13-10-2018 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 AP3564_04835 a8a34a2fa4525116b1b0ed58cdd68054 461 Pfam PF12631 MnmE helical domain 129 458 8.2E-62 T 13-10-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 AP3564_04835 a8a34a2fa4525116b1b0ed58cdd68054 461 SUPERFAMILY SSF52540 80 377 1.01E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_04835 a8a34a2fa4525116b1b0ed58cdd68054 461 Pfam PF01926 50S ribosome-binding GTPase 227 338 1.5E-25 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AP3564_04835 a8a34a2fa4525116b1b0ed58cdd68054 461 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 11 461 3.4E-133 T 13-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 AP3564_17445 7185291d1a5e708a0ab97d28fda434e5 174 SUPERFAMILY SSF140663 1 126 8.5E-36 T 13-10-2018 IPR023203 TTHA0068-like superfamily AP3564_17445 7185291d1a5e708a0ab97d28fda434e5 174 Gene3D G3DSA:1.20.58.500 3 100 3.4E-16 T 13-10-2018 AP3564_17445 7185291d1a5e708a0ab97d28fda434e5 174 Pfam PF03745 Domain of unknown function (DUF309) 6 66 2.2E-24 T 13-10-2018 IPR005500 Protein of unknown function DUF309 AP3564_00350 a73db5666b711d720724f27aef9735dc 465 Gene3D G3DSA:3.40.309.10 235 427 1.9E-176 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AP3564_00350 a73db5666b711d720724f27aef9735dc 465 Pfam PF00171 Aldehyde dehydrogenase family 4 457 2.1E-171 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AP3564_00350 a73db5666b711d720724f27aef9735dc 465 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 259 270 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AP3564_00350 a73db5666b711d720724f27aef9735dc 465 Gene3D G3DSA:3.40.605.10 4 456 1.9E-176 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AP3564_00350 a73db5666b711d720724f27aef9735dc 465 PIRSF PIRSF036492 14 458 9.5E-86 T 13-10-2018 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0006081|GO:0055114 AP3564_00350 a73db5666b711d720724f27aef9735dc 465 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 7 456 5.7E-197 T 13-10-2018 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 AP3564_00350 a73db5666b711d720724f27aef9735dc 465 SUPERFAMILY SSF53720 4 461 1.7E-162 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AP3564_07265 65df01069cfc2bdacd7a4193bc4e6e2b 79 Gene3D G3DSA:1.10.1040.10 1 75 9.4E-10 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AP3564_07265 65df01069cfc2bdacd7a4193bc4e6e2b 79 SUPERFAMILY SSF48179 2 77 1.53E-5 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AP3564_07870 7032c8ecaad12b7f71f931a9972f3cd0 487 Gene3D G3DSA:3.20.20.80 4 487 1.4E-156 T 13-10-2018 AP3564_07870 7032c8ecaad12b7f71f931a9972f3cd0 487 Pfam PF00232 Glycosyl hydrolase family 1 6 484 1.3E-141 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AP3564_07870 7032c8ecaad12b7f71f931a9972f3cd0 487 PRINTS PR00131 Glycosyl hydrolase family 1 signature 317 331 5.0E-16 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AP3564_07870 7032c8ecaad12b7f71f931a9972f3cd0 487 PRINTS PR00131 Glycosyl hydrolase family 1 signature 424 441 5.0E-16 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AP3564_07870 7032c8ecaad12b7f71f931a9972f3cd0 487 PRINTS PR00131 Glycosyl hydrolase family 1 signature 449 461 5.0E-16 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AP3564_07870 7032c8ecaad12b7f71f931a9972f3cd0 487 PRINTS PR00131 Glycosyl hydrolase family 1 signature 382 390 5.0E-16 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AP3564_07870 7032c8ecaad12b7f71f931a9972f3cd0 487 PRINTS PR00131 Glycosyl hydrolase family 1 signature 403 414 5.0E-16 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AP3564_07870 7032c8ecaad12b7f71f931a9972f3cd0 487 SUPERFAMILY SSF51445 6 485 4.98E-171 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily AP3564_07870 7032c8ecaad12b7f71f931a9972f3cd0 487 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 12 26 - T 13-10-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site AP3564_07870 7032c8ecaad12b7f71f931a9972f3cd0 487 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 382 390 - T 13-10-2018 IPR018120 Glycoside hydrolase family 1, active site AP3564_02925 53c2148392ab25fc9628d4afaca9b45c 347 PIRSF PIRSF000355 1 347 5.3E-121 T 13-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AP3564_02925 53c2148392ab25fc9628d4afaca9b45c 347 Gene3D G3DSA:1.10.620.20 26 315 1.2E-88 T 13-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 AP3564_02925 53c2148392ab25fc9628d4afaca9b45c 347 SUPERFAMILY SSF47240 22 346 4.25E-82 T 13-10-2018 IPR009078 Ferritin-like superfamily AP3564_02925 53c2148392ab25fc9628d4afaca9b45c 347 Pfam PF00268 Ribonucleotide reductase, small chain 32 309 2.8E-67 T 13-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AP3564_00665 f77aa6acd51b35a690d7d6810c4ef2ea 444 SUPERFAMILY SSF55961 158 437 3.45E-55 T 13-10-2018 AP3564_00665 f77aa6acd51b35a690d7d6810c4ef2ea 444 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 25 50 7.6E-49 T 13-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AP3564_00665 f77aa6acd51b35a690d7d6810c4ef2ea 444 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 76 96 7.6E-49 T 13-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AP3564_00665 f77aa6acd51b35a690d7d6810c4ef2ea 444 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 55 70 7.6E-49 T 13-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AP3564_00665 f77aa6acd51b35a690d7d6810c4ef2ea 444 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 182 204 7.6E-49 T 13-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AP3564_00665 f77aa6acd51b35a690d7d6810c4ef2ea 444 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 141 167 7.6E-49 T 13-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AP3564_00665 f77aa6acd51b35a690d7d6810c4ef2ea 444 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 97 117 7.6E-49 T 13-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AP3564_00665 f77aa6acd51b35a690d7d6810c4ef2ea 444 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 161 434 5.1E-20 T 13-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 AP3564_00665 f77aa6acd51b35a690d7d6810c4ef2ea 444 SUPERFAMILY SSF50022 9 157 1.14E-49 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AP3564_00665 f77aa6acd51b35a690d7d6810c4ef2ea 444 Gene3D G3DSA:3.90.380.10 23 433 7.2E-155 T 13-10-2018 AP3564_00665 f77aa6acd51b35a690d7d6810c4ef2ea 444 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 83 106 - T 13-10-2018 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0051537|GO:0055114 AP3564_00665 f77aa6acd51b35a690d7d6810c4ef2ea 444 Pfam PF00355 Rieske [2Fe-2S] domain 40 120 1.5E-20 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AP3564_00665 f77aa6acd51b35a690d7d6810c4ef2ea 444 Gene3D G3DSA:2.102.10.10 40 165 7.2E-155 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AP3564_05785 c0ebdd186422054dc4216ea357991cc7 181 Pfam PF00673 ribosomal L5P family C-terminus 84 177 5.2E-43 T 13-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05785 c0ebdd186422054dc4216ea357991cc7 181 Gene3D G3DSA:3.30.1440.10 1 179 5.2E-86 T 13-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05785 c0ebdd186422054dc4216ea357991cc7 181 Pfam PF00281 Ribosomal protein L5 24 80 3.0E-29 T 13-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05785 c0ebdd186422054dc4216ea357991cc7 181 ProSitePatterns PS00358 Ribosomal protein L5 signature. 57 73 - T 13-10-2018 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05785 c0ebdd186422054dc4216ea357991cc7 181 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 46.632 T 13-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05785 c0ebdd186422054dc4216ea357991cc7 181 PIRSF PIRSF002161 1 181 1.1E-70 T 13-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05785 c0ebdd186422054dc4216ea357991cc7 181 SUPERFAMILY SSF55282 3 178 3.3E-81 T 13-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_18770 3f131d32b707d93034e434ca82f704c8 342 SUPERFAMILY SSF111337 1 342 4.58E-139 T 13-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 AP3564_18770 3f131d32b707d93034e434ca82f704c8 342 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1 342 2.5E-147 T 13-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 AP3564_18770 3f131d32b707d93034e434ca82f704c8 342 Pfam PF02547 Queuosine biosynthesis protein 4 341 6.6E-142 T 13-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 AP3564_18770 3f131d32b707d93034e434ca82f704c8 342 Gene3D G3DSA:3.40.1780.10 14 341 2.6E-136 T 13-10-2018 AP3564_18770 3f131d32b707d93034e434ca82f704c8 342 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 342 46.745 T 13-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 AP3564_18770 3f131d32b707d93034e434ca82f704c8 342 Gene3D G3DSA:2.40.10.240 64 162 2.6E-136 T 13-10-2018 AP3564_11525 ebe4c59378afd296947640d05dd2e07a 575 Gene3D G3DSA:1.10.287.950 215 574 1.5E-72 T 13-10-2018 AP3564_11525 ebe4c59378afd296947640d05dd2e07a 575 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 372 526 7.0E-46 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AP3564_11525 ebe4c59378afd296947640d05dd2e07a 575 SUPERFAMILY SSF58104 242 572 9.42E-73 T 13-10-2018 AP3564_11525 ebe4c59378afd296947640d05dd2e07a 575 Pfam PF00672 HAMP domain 216 265 8.1E-10 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AP3564_11525 ebe4c59378afd296947640d05dd2e07a 575 SMART SM00283 298 573 1.2E-66 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AP3564_11525 ebe4c59378afd296947640d05dd2e07a 575 SMART SM00304 216 269 7.3E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AP3564_13880 138aaa48b69fd1f63c162e50596cd634 86 Gene3D G3DSA:1.20.58.1000 1 85 1.2E-22 T 13-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily AP3564_13880 138aaa48b69fd1f63c162e50596cd634 86 Pfam PF02583 Metal-sensitive transcriptional repressor 4 82 2.7E-23 T 13-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 AP3564_04275 ee63274c286267dc1b95c0f2325a3c33 216 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 14 211 4.4E-66 T 13-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AP3564_04275 ee63274c286267dc1b95c0f2325a3c33 216 Gene3D G3DSA:3.20.20.70 1 216 2.1E-78 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_04275 ee63274c286267dc1b95c0f2325a3c33 216 SUPERFAMILY SSF51391 8 213 6.02E-69 T 13-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AP3564_04275 ee63274c286267dc1b95c0f2325a3c33 216 Pfam PF02581 Thiamine monophosphate synthase 15 198 5.0E-62 T 13-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AP3564_04275 ee63274c286267dc1b95c0f2325a3c33 216 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 13 216 28.329 T 13-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AP3564_07625 5d47bcc15b62cc167b2f73b8f92c67cd 294 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 4 265 1.5E-118 T 13-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 AP3564_07625 5d47bcc15b62cc167b2f73b8f92c67cd 294 SUPERFAMILY SSF53448 1 269 1.21E-69 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AP3564_07625 5d47bcc15b62cc167b2f73b8f92c67cd 294 Gene3D G3DSA:3.90.550.10 1 289 1.3E-93 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AP3564_07625 5d47bcc15b62cc167b2f73b8f92c67cd 294 Pfam PF00483 Nucleotidyl transferase 6 265 2.9E-36 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AP3564_02715 fb53c13898d7690f974697519b83c78a 412 Gene3D G3DSA:1.20.1250.20 223 412 2.9E-21 T 13-10-2018 AP3564_02715 fb53c13898d7690f974697519b83c78a 412 SUPERFAMILY SSF103473 19 406 1.1E-47 T 13-10-2018 IPR036259 MFS transporter superfamily AP3564_02715 fb53c13898d7690f974697519b83c78a 412 Pfam PF07690 Major Facilitator Superfamily 24 271 2.2E-13 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AP3564_02715 fb53c13898d7690f974697519b83c78a 412 Gene3D G3DSA:1.20.1250.20 17 204 1.2E-15 T 13-10-2018 AP3564_12885 e9b3f7b942f7e3427b4d654062fb9e36 235 Gene3D G3DSA:3.40.50.1110 21 230 5.5E-36 T 13-10-2018 IPR036514 SGNH hydrolase superfamily AP3564_12885 e9b3f7b942f7e3427b4d654062fb9e36 235 SUPERFAMILY SSF52266 21 229 1.31E-32 T 13-10-2018 AP3564_12885 e9b3f7b942f7e3427b4d654062fb9e36 235 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 27 217 3.1E-21 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain AP3564_08485 3b5afab1c2305ae262183a76626aaf61 284 SUPERFAMILY SSF53850 35 270 2.99E-42 T 13-10-2018 AP3564_08485 3b5afab1c2305ae262183a76626aaf61 284 Gene3D G3DSA:3.40.190.10 45 265 3.9E-53 T 13-10-2018 AP3564_08485 3b5afab1c2305ae262183a76626aaf61 284 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 43 265 3.0E-40 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AP3564_08485 3b5afab1c2305ae262183a76626aaf61 284 Gene3D G3DSA:3.40.190.10 107 230 3.9E-53 T 13-10-2018 AP3564_08485 3b5afab1c2305ae262183a76626aaf61 284 SMART SM00062 37 267 2.5E-29 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AP3564_00305 1da7e0646863f176ae9ce8f484e2514c 335 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 245 333 5.9E-22 T 13-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AP3564_00305 1da7e0646863f176ae9ce8f484e2514c 335 Gene3D G3DSA:3.40.47.10 4 334 8.6E-69 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AP3564_00305 1da7e0646863f176ae9ce8f484e2514c 335 SUPERFAMILY SSF53901 8 334 6.67E-29 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AP3564_00305 1da7e0646863f176ae9ce8f484e2514c 335 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 107 188 8.8E-15 T 13-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AP3564_15025 8a22c510f7b96786884a46d17824dfdb 230 SUPERFAMILY SSF52540 17 218 3.36E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_15025 8a22c510f7b96786884a46d17824dfdb 230 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_15025 8a22c510f7b96786884a46d17824dfdb 230 SMART SM00382 40 223 2.0E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_15025 8a22c510f7b96786884a46d17824dfdb 230 Pfam PF00005 ABC transporter 31 177 1.1E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_15025 8a22c510f7b96786884a46d17824dfdb 230 Gene3D G3DSA:3.40.50.300 4 222 3.2E-50 T 13-10-2018 AP3564_17550 2ad5ab30015b2736d539a9beb56febb4 297 Gene3D G3DSA:1.10.443.10 110 291 4.0E-71 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AP3564_17550 2ad5ab30015b2736d539a9beb56febb4 297 Gene3D G3DSA:1.10.150.130 2 98 2.7E-23 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal AP3564_17550 2ad5ab30015b2736d539a9beb56febb4 297 SUPERFAMILY SSF56349 105 295 2.5E-61 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AP3564_17550 2ad5ab30015b2736d539a9beb56febb4 297 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 6 297 1.5E-124 T 13-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 AP3564_17550 2ad5ab30015b2736d539a9beb56febb4 297 SUPERFAMILY SSF47823 3 99 1.35E-20 T 13-10-2018 AP3564_17550 2ad5ab30015b2736d539a9beb56febb4 297 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 1 297 62.956 T 13-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 AP3564_17550 2ad5ab30015b2736d539a9beb56febb4 297 TIGRFAM TIGR02224 recomb_XerC: tyrosine recombinase XerC 7 297 4.2E-103 T 13-10-2018 IPR011931 Tyrosine recombinase XerC GO:0003677|GO:0006310|GO:0007059|GO:0015074|GO:0051301 AP3564_17550 2ad5ab30015b2736d539a9beb56febb4 297 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 5 89 8.1E-22 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 AP3564_17550 2ad5ab30015b2736d539a9beb56febb4 297 Pfam PF00589 Phage integrase family 110 283 2.1E-56 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AP3564_17550 2ad5ab30015b2736d539a9beb56febb4 297 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 3 297 58.39 T 13-10-2018 IPR023009 Tyrosine recombinase XerC/XerD AP3564_05450 539b45b526b56b5459e650bd054ba414 227 SUPERFAMILY SSF52540 2 207 1.52E-43 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_05450 539b45b526b56b5459e650bd054ba414 227 Gene3D G3DSA:3.40.50.300 1 227 4.9E-47 T 13-10-2018 AP3564_05450 539b45b526b56b5459e650bd054ba414 227 SMART SM00382 26 199 1.1E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_05450 539b45b526b56b5459e650bd054ba414 227 Pfam PF00005 ABC transporter 17 151 3.5E-22 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_05450 539b45b526b56b5459e650bd054ba414 227 ProSitePatterns PS00211 ABC transporters family signature. 123 137 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_15835 532cffdecccfe42ebf10f68dc5e7f419 86 Gene3D G3DSA:3.30.110.20 1 86 4.6E-37 T 13-10-2018 IPR036882 Alba-like domain superfamily GO:0003676 AP3564_15835 532cffdecccfe42ebf10f68dc5e7f419 86 ProDom PD061837 SPORULATION V STAGE S SPOVS-RELATED SPOVS CELL SEPTATION SPOVS3 RELATED 3 86 5.0E-33 T 13-10-2018 IPR007347 Sporulation stage V, protein S AP3564_15835 532cffdecccfe42ebf10f68dc5e7f419 86 Pfam PF04232 Stage V sporulation protein S (SpoVS) 2 84 9.9E-41 T 13-10-2018 IPR007347 Sporulation stage V, protein S AP3564_01110 1927c158377b29fe5a2bba8c19aa0b27 416 Pfam PF13556 PucR C-terminal helix-turn-helix domain 352 410 1.9E-20 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain AP3564_01110 1927c158377b29fe5a2bba8c19aa0b27 416 Gene3D G3DSA:1.10.10.2840 282 414 3.0E-23 T 13-10-2018 AP3564_18525 d6cc967db7e30700e72d7d6c0563e081 186 SUPERFAMILY SSF53927 8 140 4.14E-40 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 AP3564_18525 d6cc967db7e30700e72d7d6c0563e081 186 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 5 116 9.3E-28 T 13-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain AP3564_18525 d6cc967db7e30700e72d7d6c0563e081 186 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 70 105 - T 13-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 AP3564_18525 d6cc967db7e30700e72d7d6c0563e081 186 TIGRFAM TIGR02571 ComEB: ComE operon protein 2 2 150 3.0E-88 T 13-10-2018 IPR013404 Competence operon E, ComEB AP3564_18525 d6cc967db7e30700e72d7d6c0563e081 186 PIRSF PIRSF006019 1 151 6.8E-60 T 13-10-2018 IPR016473 Deoxycytidylate deaminase GO:0004132|GO:0006220|GO:0008270 KEGG: 00240+3.5.4.12|MetaCyc: PWY-7210|Reactome: R-HSA-499943 AP3564_18525 d6cc967db7e30700e72d7d6c0563e081 186 Gene3D G3DSA:3.40.140.10 2 149 3.0E-47 T 13-10-2018 AP3564_08355 5cc46ec309edde5057155fea919a8f9b 492 Pfam PF07196 Flagellin hook IN motif 121 181 2.0E-7 T 13-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 AP3564_08355 5cc46ec309edde5057155fea919a8f9b 492 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 8 104 8.4E-24 T 13-10-2018 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 AP3564_08355 5cc46ec309edde5057155fea919a8f9b 492 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 219 479 8.7E-55 T 13-10-2018 IPR010809 Flagellar hook-associated protein 2, C-terminal GO:0007155|GO:0009288 AP3564_14845 ff584ae8783cd95ad550c39ba09d15a8 194 SMART SM00563 34 145 9.4E-34 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AP3564_14845 ff584ae8783cd95ad550c39ba09d15a8 194 Pfam PF01553 Acyltransferase 20 142 1.3E-26 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AP3564_14845 ff584ae8783cd95ad550c39ba09d15a8 194 TIGRFAM TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases 21 142 1.0E-34 T 13-10-2018 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase GO:0003841|GO:0008654|GO:0016020 KEGG: 00561+2.3.1.51|KEGG: 00564+2.3.1.51|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7417|MetaCyc: PWY-7587|MetaCyc: PWY-7589|MetaCyc: PWY-7782|Reactome: R-HSA-1483166 AP3564_14845 ff584ae8783cd95ad550c39ba09d15a8 194 SUPERFAMILY SSF69593 12 182 1.26E-40 T 13-10-2018 AP3564_14600 d6e43d2a7bd31227fae940e1c66027d6 77 Gene3D G3DSA:3.10.20.30 1 77 8.1E-22 T 13-10-2018 IPR012675 Beta-grasp domain superfamily AP3564_14600 d6e43d2a7bd31227fae940e1c66027d6 77 TIGRFAM TIGR01682 moaD: molybdopterin converting factor, subunit 1 2 77 2.5E-21 T 13-10-2018 AP3564_14600 d6e43d2a7bd31227fae940e1c66027d6 77 SUPERFAMILY SSF54285 1 77 4.49E-18 T 13-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp AP3564_14600 d6e43d2a7bd31227fae940e1c66027d6 77 Pfam PF02597 ThiS family 4 77 1.1E-16 T 13-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 AP3564_08135 6c8cbcb7ff5e547f7ee95f5c9fc6aee9 231 SMART SM00882 5 216 4.7E-93 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 AP3564_08135 6c8cbcb7ff5e547f7ee95f5c9fc6aee9 231 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 1 214 5.1E-84 T 13-10-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 AP3564_08135 6c8cbcb7ff5e547f7ee95f5c9fc6aee9 231 Pfam PF01144 Coenzyme A transferase 7 214 1.7E-77 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 AP3564_08135 6c8cbcb7ff5e547f7ee95f5c9fc6aee9 231 SUPERFAMILY SSF100950 2 226 2.37E-90 T 13-10-2018 IPR037171 NagB/RpiA transferase-like AP3564_08135 6c8cbcb7ff5e547f7ee95f5c9fc6aee9 231 Gene3D G3DSA:3.40.1080.10 1 226 1.9E-102 T 13-10-2018 AP3564_08135 6c8cbcb7ff5e547f7ee95f5c9fc6aee9 231 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 17 32 - T 13-10-2018 IPR004163 Coenzyme A transferase binding site GO:0008410 Reactome: R-HSA-77108 AP3564_14850 fa46f4a8ac9d5696faa51d9dd01cdab0 193 SUPERFAMILY SSF102405 1 179 6.11E-58 T 13-10-2018 AP3564_14850 fa46f4a8ac9d5696faa51d9dd01cdab0 193 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 3 179 2.4E-60 T 13-10-2018 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG AP3564_14850 fa46f4a8ac9d5696faa51d9dd01cdab0 193 Gene3D G3DSA:3.40.50.450 1 191 9.6E-76 T 13-10-2018 AP3564_14850 fa46f4a8ac9d5696faa51d9dd01cdab0 193 Pfam PF03641 Possible lysine decarboxylase 46 175 3.4E-39 T 13-10-2018 IPR031100 LOG family AP3564_15880 bc69eaebb231313d462f00bd0a878672 236 SUPERFAMILY SSF51735 2 235 6.27E-72 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_15880 bc69eaebb231313d462f00bd0a878672 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 118 134 5.0E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_15880 bc69eaebb231313d462f00bd0a878672 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 182 5.0E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_15880 bc69eaebb231313d462f00bd0a878672 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 144 163 5.0E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_15880 bc69eaebb231313d462f00bd0a878672 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 5.0E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_15880 bc69eaebb231313d462f00bd0a878672 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 198 218 5.0E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_15880 bc69eaebb231313d462f00bd0a878672 236 Gene3D G3DSA:3.40.50.720 1 235 9.7E-68 T 13-10-2018 AP3564_15880 bc69eaebb231313d462f00bd0a878672 236 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 132 1.6E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_15880 bc69eaebb231313d462f00bd0a878672 236 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 71 82 1.6E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_15880 bc69eaebb231313d462f00bd0a878672 236 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 163 1.6E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_15880 bc69eaebb231313d462f00bd0a878672 236 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 8 234 1.7E-52 T 13-10-2018 AP3564_18610 6c67417cb29542c0206693d58d6a59af 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 8 157 5.0E-59 T 13-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 AP3564_18610 6c67417cb29542c0206693d58d6a59af 158 Gene3D G3DSA:3.10.50.30 79 158 5.6E-27 T 13-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 AP3564_18610 6c67417cb29542c0206693d58d6a59af 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 84 157 3.6E-27 T 13-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AP3564_18610 6c67417cb29542c0206693d58d6a59af 158 PIRSF PIRSF006092 1 158 1.4E-53 T 13-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 AP3564_18610 6c67417cb29542c0206693d58d6a59af 158 SUPERFAMILY SSF46557 6 80 7.06E-28 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 AP3564_18610 6c67417cb29542c0206693d58d6a59af 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 5 158 32.773 T 13-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 AP3564_18610 6c67417cb29542c0206693d58d6a59af 158 SUPERFAMILY SSF54534 84 157 1.27E-21 T 13-10-2018 AP3564_18610 6c67417cb29542c0206693d58d6a59af 158 Gene3D G3DSA:1.10.287.180 5 78 6.0E-33 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 AP3564_18610 6c67417cb29542c0206693d58d6a59af 158 Pfam PF03449 Transcription elongation factor, N-terminal 8 77 7.9E-33 T 13-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 AP3564_18610 6c67417cb29542c0206693d58d6a59af 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 20 51 - T 13-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 AP3564_18610 6c67417cb29542c0206693d58d6a59af 158 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 123 139 - T 13-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 AP3564_00565 14ad4a053a17b995bf0fcd4472429014 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 3.9E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_00565 14ad4a053a17b995bf0fcd4472429014 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 3.9E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_00565 14ad4a053a17b995bf0fcd4472429014 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 3.9E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_00565 14ad4a053a17b995bf0fcd4472429014 306 Pfam PF03466 LysR substrate binding domain 88 292 5.0E-34 T 13-10-2018 IPR005119 LysR, substrate-binding AP3564_00565 14ad4a053a17b995bf0fcd4472429014 306 SUPERFAMILY SSF53850 89 293 2.02E-32 T 13-10-2018 AP3564_00565 14ad4a053a17b995bf0fcd4472429014 306 Gene3D G3DSA:3.40.190.290 93 295 7.3E-43 T 13-10-2018 AP3564_00565 14ad4a053a17b995bf0fcd4472429014 306 Gene3D G3DSA:1.10.10.10 2 92 1.7E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_00565 14ad4a053a17b995bf0fcd4472429014 306 SUPERFAMILY SSF46785 2 88 3.12E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_00565 14ad4a053a17b995bf0fcd4472429014 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 2.1E-22 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_12220 1bbf827ddd8ad7fa86d13a6a3a4638b4 538 Gene3D G3DSA:1.10.10.2840 408 537 3.2E-19 T 13-10-2018 AP3564_12220 1bbf827ddd8ad7fa86d13a6a3a4638b4 538 Pfam PF13556 PucR C-terminal helix-turn-helix domain 474 532 4.2E-21 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain AP3564_12220 1bbf827ddd8ad7fa86d13a6a3a4638b4 538 Pfam PF07905 Purine catabolism regulatory protein-like family 5 124 1.4E-32 T 13-10-2018 IPR012914 Purine catabolism PurC-like domain AP3564_08040 e200ff3eafd342160dec1e718968a7e7 299 SMART SM00382 27 240 4.8E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_08040 e200ff3eafd342160dec1e718968a7e7 299 Gene3D G3DSA:3.40.50.300 1 231 5.3E-59 T 13-10-2018 AP3564_08040 e200ff3eafd342160dec1e718968a7e7 299 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_08040 e200ff3eafd342160dec1e718968a7e7 299 Pfam PF13732 Domain of unknown function (DUF4162) 212 294 3.5E-20 T 13-10-2018 IPR025302 Domain of unknown function DUF4162 AP3564_08040 e200ff3eafd342160dec1e718968a7e7 299 SUPERFAMILY SSF52540 3 224 6.37E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_08040 e200ff3eafd342160dec1e718968a7e7 299 Pfam PF00005 ABC transporter 19 158 2.2E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_04130 fb4fe524407c339b3f733005a4f00d89 220 Pfam PF02163 Peptidase family M50 129 166 6.1E-8 T 13-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 AP3564_03205 7fd32ce0b7be89c1b8b92ae2b9ee7581 262 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_03205 7fd32ce0b7be89c1b8b92ae2b9ee7581 262 SMART SM00382 31 234 3.2E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_03205 7fd32ce0b7be89c1b8b92ae2b9ee7581 262 Gene3D G3DSA:3.40.50.300 1 258 2.9E-60 T 13-10-2018 AP3564_03205 7fd32ce0b7be89c1b8b92ae2b9ee7581 262 SUPERFAMILY SSF52540 2 235 2.21E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_03205 7fd32ce0b7be89c1b8b92ae2b9ee7581 262 Pfam PF00005 ABC transporter 22 177 2.2E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_19435 50c59ef9b72f86b93536df6ff5889824 226 Gene3D G3DSA:3.60.15.10 1 226 2.1E-73 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AP3564_19435 50c59ef9b72f86b93536df6ff5889824 226 SMART SM00849 7 192 3.7E-11 T 13-10-2018 IPR001279 Metallo-beta-lactamase AP3564_19435 50c59ef9b72f86b93536df6ff5889824 226 Hamap MF_00457 UPF0173 metal-dependent hydrolase . 1 226 37.666 T 13-10-2018 IPR022877 Protein of unknown funcion UPF0173 AP3564_19435 50c59ef9b72f86b93536df6ff5889824 226 Pfam PF13483 Beta-lactamase superfamily domain 2 192 8.8E-25 T 13-10-2018 AP3564_19435 50c59ef9b72f86b93536df6ff5889824 226 SUPERFAMILY SSF56281 1 224 1.05E-34 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AP3564_04875 6f3adc1c1b856dcd9f5564de5c4b0afd 71 Pfam PF13275 S4 domain 5 68 2.0E-29 T 13-10-2018 AP3564_04875 6f3adc1c1b856dcd9f5564de5c4b0afd 71 SUPERFAMILY SSF55174 4 68 7.65E-19 T 13-10-2018 AP3564_04875 6f3adc1c1b856dcd9f5564de5c4b0afd 71 TIGRFAM TIGR02988 YaaA_near_RecF: S4 domain protein YaaA 5 62 7.9E-32 T 13-10-2018 IPR014330 RNA-binding S4-related,YaaA AP3564_04875 6f3adc1c1b856dcd9f5564de5c4b0afd 71 Gene3D G3DSA:3.10.290.10 1 69 1.8E-25 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AP3564_02410 f460970271ceaf586fba8f5bb36dbe9c 156 Gene3D G3DSA:3.40.30.10 1 155 2.5E-58 T 13-10-2018 AP3564_02410 f460970271ceaf586fba8f5bb36dbe9c 156 SUPERFAMILY SSF52833 4 153 2.4E-57 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AP3564_02410 f460970271ceaf586fba8f5bb36dbe9c 156 Pfam PF00578 AhpC/TSA family 5 132 2.9E-45 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AP3564_02410 f460970271ceaf586fba8f5bb36dbe9c 156 PIRSF PIRSF000239 1 154 5.6E-32 T 13-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AP3564_16055 352f7c26f60c1e965d683cc88bd6995e 240 PIRSF PIRSF005650 1 240 7.4E-99 T 13-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 AP3564_16055 352f7c26f60c1e965d683cc88bd6995e 240 Hamap MF_01220_B Uridylate kinase [pyrH]. 4 238 45.632 T 13-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 AP3564_16055 352f7c26f60c1e965d683cc88bd6995e 240 Pfam PF00696 Amino acid kinase family 8 217 7.2E-30 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 AP3564_16055 352f7c26f60c1e965d683cc88bd6995e 240 SUPERFAMILY SSF53633 4 238 6.68E-76 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AP3564_16055 352f7c26f60c1e965d683cc88bd6995e 240 Gene3D G3DSA:3.40.1160.10 1 239 5.2E-83 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AP3564_16055 352f7c26f60c1e965d683cc88bd6995e 240 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 6 237 1.4E-103 T 13-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 AP3564_17320 df864d5b6e59549210fb54b4ead2857f 418 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 185 416 6.8E-79 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AP3564_17320 df864d5b6e59549210fb54b4ead2857f 418 Gene3D G3DSA:1.10.8.1210 12 346 2.4E-145 T 13-10-2018 AP3564_17320 df864d5b6e59549210fb54b4ead2857f 418 Gene3D G3DSA:3.40.50.10860 37 191 2.4E-145 T 13-10-2018 AP3564_17320 df864d5b6e59549210fb54b4ead2857f 418 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 40 167 2.4E-53 T 13-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AP3564_17320 df864d5b6e59549210fb54b4ead2857f 418 PIRSF PIRSF000185 6 418 9.9E-173 T 13-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 AP3564_17320 df864d5b6e59549210fb54b4ead2857f 418 SUPERFAMILY SSF53223 10 187 8.64E-65 T 13-10-2018 AP3564_17320 df864d5b6e59549210fb54b4ead2857f 418 SMART SM00839 187 416 4.4E-96 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AP3564_17320 df864d5b6e59549210fb54b4ead2857f 418 Gene3D G3DSA:1.10.8.1210 372 418 9.4E-18 T 13-10-2018 AP3564_17320 df864d5b6e59549210fb54b4ead2857f 418 SUPERFAMILY SSF51735 185 417 1.79E-78 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_17320 df864d5b6e59549210fb54b4ead2857f 418 Gene3D G3DSA:3.40.50.720 192 345 2.4E-145 T 13-10-2018 AP3564_17320 df864d5b6e59549210fb54b4ead2857f 418 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 96 110 3.0E-30 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AP3564_17320 df864d5b6e59549210fb54b4ead2857f 418 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 344 355 3.0E-30 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AP3564_17320 df864d5b6e59549210fb54b4ead2857f 418 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 176 198 3.0E-30 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AP3564_17320 df864d5b6e59549210fb54b4ead2857f 418 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 218 238 3.0E-30 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AP3564_17320 df864d5b6e59549210fb54b4ead2857f 418 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 104 117 - T 13-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AP3564_15150 56a7bb77f5008f5b5482d8b9109b30f8 417 Pfam PF01609 Transposase DDE domain 124 336 5.5E-30 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_15150 56a7bb77f5008f5b5482d8b9109b30f8 417 SUPERFAMILY SSF53098 77 362 6.52E-42 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_17485 66fdf113b4361e4183cdb7d681cd97fb 288 Pfam PF06207 Protein of unknown function (DUF1002) 33 251 3.6E-79 T 13-10-2018 IPR009343 Protein of unknown function DUF1002 AP3564_02045 16e102d1fb64f18b23b4acdee1523a59 194 SUPERFAMILY SSF48498 91 179 1.14E-7 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AP3564_02045 16e102d1fb64f18b23b4acdee1523a59 194 Gene3D G3DSA:1.10.357.10 8 184 1.4E-21 T 13-10-2018 AP3564_02045 16e102d1fb64f18b23b4acdee1523a59 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 5.4E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_02045 16e102d1fb64f18b23b4acdee1523a59 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 5.4E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_02045 16e102d1fb64f18b23b4acdee1523a59 194 SUPERFAMILY SSF46689 6 70 1.3E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_02045 16e102d1fb64f18b23b4acdee1523a59 194 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 57 2.7E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_02045 16e102d1fb64f18b23b4acdee1523a59 194 ProSitePatterns PS01081 TetR-type HTH domain signature. 24 55 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AP3564_09300 c015b5a2b8e4a769d261b76cf36859f0 121 Pfam PF00575 S1 RNA binding domain 6 77 6.5E-20 T 13-10-2018 IPR003029 S1 domain GO:0003676 AP3564_09300 c015b5a2b8e4a769d261b76cf36859f0 121 SUPERFAMILY SSF50249 6 90 1.27E-24 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_09300 c015b5a2b8e4a769d261b76cf36859f0 121 PRINTS PR00681 Ribosomal protein S1 signature 60 78 6.7E-11 T 13-10-2018 AP3564_09300 c015b5a2b8e4a769d261b76cf36859f0 121 PRINTS PR00681 Ribosomal protein S1 signature 21 40 6.7E-11 T 13-10-2018 AP3564_09300 c015b5a2b8e4a769d261b76cf36859f0 121 Gene3D G3DSA:2.40.50.140 2 86 7.9E-32 T 13-10-2018 AP3564_09300 c015b5a2b8e4a769d261b76cf36859f0 121 SMART SM00316 6 77 2.0E-25 T 13-10-2018 IPR022967 RNA-binding domain, S1 AP3564_06945 0f453bde3399f2f8552ce9eb09a2b83b 142 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 2 117 2.2E-41 T 13-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 AP3564_06945 0f453bde3399f2f8552ce9eb09a2b83b 142 SUPERFAMILY SSF52540 7 126 3.35E-22 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_06945 0f453bde3399f2f8552ce9eb09a2b83b 142 Gene3D G3DSA:3.40.50.300 1 134 4.0E-41 T 13-10-2018 AP3564_06945 0f453bde3399f2f8552ce9eb09a2b83b 142 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 3 111 9.3E-36 T 13-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 AP3564_05860 3449579c7ebfc418a256b18a14074d5a 129 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 10 126 1.6E-59 T 13-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05860 3449579c7ebfc418a256b18a14074d5a 129 Gene3D G3DSA:3.30.420.80 1 129 6.5E-56 T 13-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 AP3564_05860 3449579c7ebfc418a256b18a14074d5a 129 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 129 34.695 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AP3564_05860 3449579c7ebfc418a256b18a14074d5a 129 PIRSF PIRSF002131 1 129 5.2E-55 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AP3564_05860 3449579c7ebfc418a256b18a14074d5a 129 ProSitePatterns PS00054 Ribosomal protein S11 signature. 97 119 - T 13-10-2018 IPR018102 Ribosomal S11, conserved site AP3564_05860 3449579c7ebfc418a256b18a14074d5a 129 Pfam PF00411 Ribosomal protein S11 19 128 4.5E-53 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AP3564_05860 3449579c7ebfc418a256b18a14074d5a 129 SUPERFAMILY SSF53137 14 129 1.11E-50 T 13-10-2018 AP3564_05525 4d76a5b9dc8117b5cd75f5cd1bf15cb8 132 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 12 34 6.5E-7 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site AP3564_05525 4d76a5b9dc8117b5cd75f5cd1bf15cb8 132 Pfam PF07963 Prokaryotic N-terminal methylation motif 9 33 5.2E-7 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site AP3564_05525 4d76a5b9dc8117b5cd75f5cd1bf15cb8 132 Gene3D G3DSA:3.30.700.10 15 128 9.7E-13 T 13-10-2018 AP3564_05525 4d76a5b9dc8117b5cd75f5cd1bf15cb8 132 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 12 32 - T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site AP3564_05525 4d76a5b9dc8117b5cd75f5cd1bf15cb8 132 SUPERFAMILY SSF54523 14 95 3.06E-13 T 13-10-2018 AP3564_06645 2790c6621d7a0cfad4204ff58932df12 330 Pfam PF00296 Luciferase-like monooxygenase 15 295 7.3E-32 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AP3564_06645 2790c6621d7a0cfad4204ff58932df12 330 SUPERFAMILY SSF51679 1 325 6.02E-64 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AP3564_06645 2790c6621d7a0cfad4204ff58932df12 330 Gene3D G3DSA:3.20.20.30 1 329 1.0E-85 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AP3564_06645 2790c6621d7a0cfad4204ff58932df12 330 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 3 323 1.4E-104 T 13-10-2018 IPR019949 Luciferase family oxidoreductase, group 1 AP3564_15480 56a595c01197790e10cd731a55d08f3a 1250 Gene3D G3DSA:1.20.1560.10 650 954 4.9E-35 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AP3564_15480 56a595c01197790e10cd731a55d08f3a 1250 Gene3D G3DSA:1.20.1560.10 15 331 3.1E-46 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AP3564_15480 56a595c01197790e10cd731a55d08f3a 1250 Pfam PF00005 ABC transporter 1005 1153 1.7E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_15480 56a595c01197790e10cd731a55d08f3a 1250 Pfam PF00664 ABC transporter transmembrane region 718 945 3.2E-21 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AP3564_15480 56a595c01197790e10cd731a55d08f3a 1250 Pfam PF00664 ABC transporter transmembrane region 33 297 5.7E-25 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AP3564_15480 56a595c01197790e10cd731a55d08f3a 1250 ProSitePatterns PS00211 ABC transporters family signature. 1125 1139 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_15480 56a595c01197790e10cd731a55d08f3a 1250 Gene3D G3DSA:3.40.50.300 342 601 2.1E-83 T 13-10-2018 AP3564_15480 56a595c01197790e10cd731a55d08f3a 1250 Gene3D G3DSA:3.40.50.300 981 1226 1.6E-83 T 13-10-2018 AP3564_15480 56a595c01197790e10cd731a55d08f3a 1250 SMART SM00382 373 564 9.4E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_15480 56a595c01197790e10cd731a55d08f3a 1250 SMART SM00382 1013 1194 5.9E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_15480 56a595c01197790e10cd731a55d08f3a 1250 Pfam PF00005 ABC transporter 364 513 1.5E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_15480 56a595c01197790e10cd731a55d08f3a 1250 SUPERFAMILY SSF90123 675 956 1.7E-40 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AP3564_15480 56a595c01197790e10cd731a55d08f3a 1250 SUPERFAMILY SSF52540 343 588 6.99E-85 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_15480 56a595c01197790e10cd731a55d08f3a 1250 SUPERFAMILY SSF90123 18 336 6.41E-49 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AP3564_15480 56a595c01197790e10cd731a55d08f3a 1250 ProSitePatterns PS00211 ABC transporters family signature. 485 499 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_15480 56a595c01197790e10cd731a55d08f3a 1250 SUPERFAMILY SSF52540 985 1216 5.44E-84 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_01040 3abb8d6f9e8e564d39e5adc588d246c4 435 ProSitePatterns PS00217 Sugar transport proteins signature 2. 117 142 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AP3564_01040 3abb8d6f9e8e564d39e5adc588d246c4 435 Pfam PF00083 Sugar (and other) transporter 8 421 1.3E-29 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AP3564_01040 3abb8d6f9e8e564d39e5adc588d246c4 435 SUPERFAMILY SSF103473 5 421 4.05E-61 T 13-10-2018 IPR036259 MFS transporter superfamily AP3564_01040 3abb8d6f9e8e564d39e5adc588d246c4 435 Gene3D G3DSA:1.20.1250.20 2 433 1.4E-66 T 13-10-2018 AP3564_01040 3abb8d6f9e8e564d39e5adc588d246c4 435 ProSitePatterns PS00216 Sugar transport proteins signature 1. 287 303 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AP3564_12945 ab81fe138574646a1304dd22f2f7e6d5 256 Pfam PF07070 SpoOM protein 4 214 4.3E-75 T 13-10-2018 IPR009776 Sporulation stage 0, protein M AP3564_12945 ab81fe138574646a1304dd22f2f7e6d5 256 Gene3D G3DSA:2.60.40.640 13 136 5.5E-5 T 13-10-2018 IPR014752 Arrestin, C-terminal AP3564_09605 9b0744335d379a45714b957be71bb3a1 321 SMART SM00729 32 259 1.4E-42 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AP3564_09605 9b0744335d379a45714b957be71bb3a1 321 Pfam PF16199 Radical_SAM C-terminal domain 220 303 3.0E-25 T 13-10-2018 IPR032432 Radical SAM, C-terminal extension Reactome: R-HSA-3214847 AP3564_09605 9b0744335d379a45714b957be71bb3a1 321 Pfam PF04055 Radical SAM superfamily 52 214 1.0E-14 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AP3564_09605 9b0744335d379a45714b957be71bb3a1 321 Gene3D G3DSA:3.80.30.20 50 246 1.1E-15 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe AP3564_09605 9b0744335d379a45714b957be71bb3a1 321 SUPERFAMILY SSF102114 7 314 6.02E-57 T 13-10-2018 AP3564_09605 9b0744335d379a45714b957be71bb3a1 321 TIGRFAM TIGR01212 TIGR01212: radical SAM protein, TIGR01212 family 15 314 6.5E-139 T 13-10-2018 IPR005911 Protein YhcC-like GO:0051536 AP3564_19370 84c2ad26e0947f8f1a330c187e0f9c90 372 Gene3D G3DSA:1.10.230.10 220 318 1.4E-132 T 13-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain AP3564_19370 84c2ad26e0947f8f1a330c187e0f9c90 372 TIGRFAM TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II 5 371 2.0E-168 T 13-10-2018 IPR011278 2-methylcitrate synthase/citrate synthase type I GO:0005737|GO:0046912 AP3564_19370 84c2ad26e0947f8f1a330c187e0f9c90 372 Pfam PF00285 Citrate synthase, C-terminal domain 6 354 8.4E-135 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 AP3564_19370 84c2ad26e0947f8f1a330c187e0f9c90 372 Gene3D G3DSA:1.10.580.10 25 351 1.4E-132 T 13-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 AP3564_19370 84c2ad26e0947f8f1a330c187e0f9c90 372 ProSitePatterns PS00480 Citrate synthase signature. 254 266 - T 13-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 AP3564_19370 84c2ad26e0947f8f1a330c187e0f9c90 372 PIRSF PIRSF001369 1 372 4.1E-160 T 13-10-2018 IPR024176 Citrate synthase, bacterial-type AP3564_19370 84c2ad26e0947f8f1a330c187e0f9c90 372 SUPERFAMILY SSF48256 2 371 1.57E-138 T 13-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 AP3564_19370 84c2ad26e0947f8f1a330c187e0f9c90 372 PRINTS PR00143 Citrate synthase signature 324 338 3.9E-43 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 AP3564_19370 84c2ad26e0947f8f1a330c187e0f9c90 372 PRINTS PR00143 Citrate synthase signature 304 320 3.9E-43 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 AP3564_19370 84c2ad26e0947f8f1a330c187e0f9c90 372 PRINTS PR00143 Citrate synthase signature 247 267 3.9E-43 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 AP3564_19370 84c2ad26e0947f8f1a330c187e0f9c90 372 PRINTS PR00143 Citrate synthase signature 172 187 3.9E-43 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 AP3564_19370 84c2ad26e0947f8f1a330c187e0f9c90 372 PRINTS PR00143 Citrate synthase signature 123 136 3.9E-43 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 AP3564_19370 84c2ad26e0947f8f1a330c187e0f9c90 372 PRINTS PR00143 Citrate synthase signature 194 222 3.9E-43 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 AP3564_17815 9525b3903275648355b9464f8e0924c1 149 Pfam PF01316 Arginine repressor, DNA binding domain 1 70 2.2E-27 T 13-10-2018 IPR020900 Arginine repressor, DNA-binding domain GO:0003700|GO:0006355|GO:0006525 AP3564_17815 9525b3903275648355b9464f8e0924c1 149 Gene3D G3DSA:1.10.10.10 4 67 1.5E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_17815 9525b3903275648355b9464f8e0924c1 149 TIGRFAM TIGR01529 argR_whole: arginine repressor 5 149 8.7E-57 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 AP3564_17815 9525b3903275648355b9464f8e0924c1 149 Pfam PF02863 Arginine repressor, C-terminal domain 81 145 1.5E-28 T 13-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 AP3564_17815 9525b3903275648355b9464f8e0924c1 149 Hamap MF_00173 Arginine repressor [argR]. 1 149 71.456 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 AP3564_17815 9525b3903275648355b9464f8e0924c1 149 PRINTS PR01467 Bacterial arginine repressor signature 21 34 1.2E-28 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 AP3564_17815 9525b3903275648355b9464f8e0924c1 149 PRINTS PR01467 Bacterial arginine repressor signature 37 52 1.2E-28 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 AP3564_17815 9525b3903275648355b9464f8e0924c1 149 PRINTS PR01467 Bacterial arginine repressor signature 88 101 1.2E-28 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 AP3564_17815 9525b3903275648355b9464f8e0924c1 149 PRINTS PR01467 Bacterial arginine repressor signature 118 133 1.2E-28 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 AP3564_17815 9525b3903275648355b9464f8e0924c1 149 SUPERFAMILY SSF46785 3 78 3.77E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_17815 9525b3903275648355b9464f8e0924c1 149 SUPERFAMILY SSF55252 80 149 5.23E-23 T 13-10-2018 IPR036251 Arginine repressor, C-terminal domain superfamily GO:0034618|GO:0051259 AP3564_17815 9525b3903275648355b9464f8e0924c1 149 ProDom PD007402 ARGININE REPRESSOR TRANSCRIPTION BIOSYNTHESIS DNA-BINDING REGULATION AMINO-ACID ARGR TRANSCRIPTIONAL FAMILY 87 149 1.0E-22 T 13-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 AP3564_17815 9525b3903275648355b9464f8e0924c1 149 Gene3D G3DSA:3.30.1360.40 68 149 3.1E-33 T 13-10-2018 AP3564_16030 edef5b21b96ab51c16836c54e830057e 419 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 2 418 4.2E-123 T 13-10-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 AP3564_16030 edef5b21b96ab51c16836c54e830057e 419 Gene3D G3DSA:2.30.42.10 200 287 2.6E-23 T 13-10-2018 AP3564_16030 edef5b21b96ab51c16836c54e830057e 419 SMART SM00228 189 258 3.9E-8 T 13-10-2018 IPR001478 PDZ domain GO:0005515 AP3564_16030 edef5b21b96ab51c16836c54e830057e 419 Pfam PF13180 PDZ domain 197 266 1.6E-6 T 13-10-2018 IPR001478 PDZ domain GO:0005515 AP3564_16030 edef5b21b96ab51c16836c54e830057e 419 Pfam PF02163 Peptidase family M50 6 405 3.0E-81 T 13-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 AP3564_16030 edef5b21b96ab51c16836c54e830057e 419 SUPERFAMILY SSF50156 173 267 2.89E-18 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 AP3564_01405 d8fe0d66880e8098373c2cf3c1827de8 381 Pfam PF08402 TOBE domain 279 348 1.8E-10 T 13-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AP3564_01405 d8fe0d66880e8098373c2cf3c1827de8 381 Gene3D G3DSA:3.40.50.300 1 238 7.6E-74 T 13-10-2018 AP3564_01405 d8fe0d66880e8098373c2cf3c1827de8 381 Pfam PF00005 ABC transporter 20 161 7.2E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_01405 d8fe0d66880e8098373c2cf3c1827de8 381 Gene3D G3DSA:2.40.50.100 240 354 3.2E-16 T 13-10-2018 AP3564_01405 d8fe0d66880e8098373c2cf3c1827de8 381 SUPERFAMILY SSF52540 4 243 2.81E-82 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_01405 d8fe0d66880e8098373c2cf3c1827de8 381 SMART SM00382 28 211 1.8E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_01405 d8fe0d66880e8098373c2cf3c1827de8 381 Gene3D G3DSA:2.40.50.140 281 341 3.2E-16 T 13-10-2018 AP3564_01405 d8fe0d66880e8098373c2cf3c1827de8 381 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_01405 d8fe0d66880e8098373c2cf3c1827de8 381 SUPERFAMILY SSF50331 236 356 2.02E-19 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AP3564_06355 5388280098c012d9542129f978d4325f 418 Hamap MF_00541 L-rhamnose isomerase [rhaA]. 1 418 256.739 T 13-10-2018 IPR009308 Rhamnose isomerase GO:0008740|GO:0019299|GO:0030145 KEGG: 00051+5.3.1.14 AP3564_06355 5388280098c012d9542129f978d4325f 418 SUPERFAMILY SSF51658 3 417 1.92E-78 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily AP3564_06355 5388280098c012d9542129f978d4325f 418 Gene3D G3DSA:3.20.20.150 1 418 7.6E-195 T 13-10-2018 AP3564_06355 5388280098c012d9542129f978d4325f 418 Pfam PF06134 L-rhamnose isomerase (RhaA) 1 417 5.7E-244 T 13-10-2018 IPR009308 Rhamnose isomerase GO:0008740|GO:0019299|GO:0030145 KEGG: 00051+5.3.1.14 AP3564_06355 5388280098c012d9542129f978d4325f 418 ProDom PD042532 ISOMERASE L-RHAMNOSE METAL-BINDING METABOLISM RHAMNOSE MANGANESE ENZYME KINASE 3D-STRUCTURE RHAA/RHAB 7 417 0.0 T 13-10-2018 AP3564_06355 5388280098c012d9542129f978d4325f 418 TIGRFAM TIGR01748 rhaA: L-rhamnose isomerase 3 417 4.0E-232 T 13-10-2018 IPR009308 Rhamnose isomerase GO:0008740|GO:0019299|GO:0030145 KEGG: 00051+5.3.1.14 AP3564_16685 5e8584a1cfdde2d2338565af9cdbc7f2 446 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 6 443 3.5E-138 T 13-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AP3564_16685 5e8584a1cfdde2d2338565af9cdbc7f2 446 Pfam PF02875 Mur ligase family, glutamate ligase domain 307 373 8.6E-9 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 AP3564_16685 5e8584a1cfdde2d2338565af9cdbc7f2 446 SUPERFAMILY SSF53244 306 445 2.29E-42 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AP3564_16685 5e8584a1cfdde2d2338565af9cdbc7f2 446 Gene3D G3DSA:3.40.1190.10 98 304 3.7E-66 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AP3564_16685 5e8584a1cfdde2d2338565af9cdbc7f2 446 SUPERFAMILY SSF53623 99 304 3.92E-53 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AP3564_16685 5e8584a1cfdde2d2338565af9cdbc7f2 446 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 5 445 36.255 T 13-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AP3564_16685 5e8584a1cfdde2d2338565af9cdbc7f2 446 SUPERFAMILY SSF51984 5 96 3.53E-18 T 13-10-2018 AP3564_16685 5e8584a1cfdde2d2338565af9cdbc7f2 446 Pfam PF08245 Mur ligase middle domain 113 287 1.3E-38 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 AP3564_16685 5e8584a1cfdde2d2338565af9cdbc7f2 446 Gene3D G3DSA:3.90.190.20 311 444 2.4E-43 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AP3564_16685 5e8584a1cfdde2d2338565af9cdbc7f2 446 Gene3D G3DSA:3.40.50.720 5 91 1.9E-30 T 13-10-2018 AP3564_04705 0b5b957e18a5aa788bab5fa830e492a4 51 TIGRFAM TIGR04129 CxxH_BA5709: CxxH/CxxC protein, BA_5709 family 1 49 7.8E-22 T 13-10-2018 IPR025626 YyzF-like protein AP3564_04705 0b5b957e18a5aa788bab5fa830e492a4 51 Pfam PF14116 YyzF-like protein 3 50 2.3E-21 T 13-10-2018 IPR025626 YyzF-like protein AP3564_11630 fe98d5115785a1066edd3a538c75c449 239 Gene3D G3DSA:3.40.50.10420 45 236 1.0E-37 T 13-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily AP3564_11630 fe98d5115785a1066edd3a538c75c449 239 SUPERFAMILY SSF100950 46 237 4.6E-42 T 13-10-2018 IPR037171 NagB/RpiA transferase-like AP3564_11630 fe98d5115785a1066edd3a538c75c449 239 Pfam PF02589 LUD domain 52 236 2.4E-32 T 13-10-2018 IPR003741 LUD domain AP3564_11630 fe98d5115785a1066edd3a538c75c449 239 Hamap MF_02104 Lactate utilization protein C [lutC]. 4 236 48.558 T 13-10-2018 IPR022823 Lactate utilization protein C AP3564_16120 1c80266a4d80e500ecad2d1c33b4907b 360 Pfam PF01312 FlhB HrpN YscU SpaS Family 13 353 8.3E-136 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AP3564_16120 1c80266a4d80e500ecad2d1c33b4907b 360 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 14 359 1.0E-135 T 13-10-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 AP3564_16120 1c80266a4d80e500ecad2d1c33b4907b 360 Gene3D G3DSA:3.40.1690.10 224 360 2.4E-57 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal AP3564_16120 1c80266a4d80e500ecad2d1c33b4907b 360 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 16 38 1.9E-38 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AP3564_16120 1c80266a4d80e500ecad2d1c33b4907b 360 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 278 293 1.9E-38 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AP3564_16120 1c80266a4d80e500ecad2d1c33b4907b 360 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 308 329 1.9E-38 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AP3564_16120 1c80266a4d80e500ecad2d1c33b4907b 360 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 234 251 1.9E-38 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AP3564_16120 1c80266a4d80e500ecad2d1c33b4907b 360 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 214 232 1.9E-38 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AP3564_16120 1c80266a4d80e500ecad2d1c33b4907b 360 SUPERFAMILY SSF160544 250 357 4.45E-42 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal AP3564_14935 8ff1abe40f1f3b1c106fff472069a4f2 415 Pfam PF01420 Type I restriction modification DNA specificity domain 207 387 7.4E-15 T 13-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 AP3564_14935 8ff1abe40f1f3b1c106fff472069a4f2 415 Pfam PF01420 Type I restriction modification DNA specificity domain 4 175 4.2E-14 T 13-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 AP3564_14935 8ff1abe40f1f3b1c106fff472069a4f2 415 Gene3D G3DSA:3.90.220.20 2 187 2.5E-34 T 13-10-2018 AP3564_14935 8ff1abe40f1f3b1c106fff472069a4f2 415 Gene3D G3DSA:3.90.220.20 193 402 4.9E-34 T 13-10-2018 AP3564_14935 8ff1abe40f1f3b1c106fff472069a4f2 415 SUPERFAMILY SSF116734 3 189 1.96E-30 T 13-10-2018 AP3564_14935 8ff1abe40f1f3b1c106fff472069a4f2 415 SUPERFAMILY SSF116734 197 407 3.43E-39 T 13-10-2018 AP3564_12695 988b5a9432cd68e7bcbd65921b3072c9 211 Hamap MF_01851 UPF0637 protein . 5 205 38.483 T 13-10-2018 IPR009403 Protein of unknown function UPF0637 AP3564_12695 988b5a9432cd68e7bcbd65921b3072c9 211 PIRSF PIRSF021332 1 209 3.3E-89 T 13-10-2018 IPR009403 Protein of unknown function UPF0637 AP3564_12695 988b5a9432cd68e7bcbd65921b3072c9 211 Gene3D G3DSA:3.30.930.20 3 211 8.2E-89 T 13-10-2018 AP3564_12695 988b5a9432cd68e7bcbd65921b3072c9 211 SUPERFAMILY SSF142913 3 208 3.92E-83 T 13-10-2018 AP3564_12695 988b5a9432cd68e7bcbd65921b3072c9 211 Pfam PF06335 Protein of unknown function (DUF1054) 6 203 9.8E-86 T 13-10-2018 IPR009403 Protein of unknown function UPF0637 AP3564_13635 ff4fc004b77559bc8ba838037aee42a5 380 SUPERFAMILY SSF55874 276 367 2.49E-12 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_13635 ff4fc004b77559bc8ba838037aee42a5 380 Pfam PF07730 Histidine kinase 179 243 6.3E-21 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AP3564_13635 ff4fc004b77559bc8ba838037aee42a5 380 Gene3D G3DSA:3.30.565.10 243 369 2.5E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_13635 ff4fc004b77559bc8ba838037aee42a5 380 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 283 366 2.5E-5 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_19605 b7d1998b3bde2584ad03c10dc31836fd 292 Pfam PF13612 Transposase DDE domain 111 267 4.6E-28 T 13-10-2018 IPR025668 Transposase DDE domain AP3564_13950 d4fd2e86b115ef37eee9eded252f724f 77 SUPERFAMILY SSF52833 3 76 5.17E-21 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AP3564_13950 d4fd2e86b115ef37eee9eded252f724f 77 Gene3D G3DSA:3.40.30.10 1 76 5.4E-26 T 13-10-2018 AP3564_13950 d4fd2e86b115ef37eee9eded252f724f 77 Pfam PF00462 Glutaredoxin 4 62 2.1E-17 T 13-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 AP3564_04615 5e1893d3f0b32292f7b2c83a7327ef8e 507 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 171 187 5.5E-21 T 13-10-2018 AP3564_04615 5e1893d3f0b32292f7b2c83a7327ef8e 507 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 268 280 5.5E-21 T 13-10-2018 AP3564_04615 5e1893d3f0b32292f7b2c83a7327ef8e 507 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 302 326 5.5E-21 T 13-10-2018 AP3564_04615 5e1893d3f0b32292f7b2c83a7327ef8e 507 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 194 208 5.5E-21 T 13-10-2018 AP3564_04615 5e1893d3f0b32292f7b2c83a7327ef8e 507 SUPERFAMILY SSF53335 11 506 2.68E-152 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_04615 5e1893d3f0b32292f7b2c83a7327ef8e 507 Gene3D G3DSA:3.40.50.150 148 450 1.5E-128 T 13-10-2018 AP3564_04615 5e1893d3f0b32292f7b2c83a7327ef8e 507 Pfam PF02384 N-6 DNA Methylase 147 466 9.4E-125 T 13-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 AP3564_04615 5e1893d3f0b32292f7b2c83a7327ef8e 507 Gene3D G3DSA:1.20.1260.30 5 140 5.9E-49 T 13-10-2018 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily AP3564_04615 5e1893d3f0b32292f7b2c83a7327ef8e 507 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 271 277 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AP3564_04615 5e1893d3f0b32292f7b2c83a7327ef8e 507 Pfam PF12161 HsdM N-terminal domain 11 137 3.5E-28 T 13-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain AP3564_16290 8b8612bbc648f4e71cfdba9efd8183a1 284 Gene3D G3DSA:3.40.50.300 12 179 9.8E-50 T 13-10-2018 AP3564_16290 8b8612bbc648f4e71cfdba9efd8183a1 284 Gene3D G3DSA:1.10.1580.10 180 273 2.2E-30 T 13-10-2018 IPR023179 GTP-binding protein, orthogonal bundle domain superfamily AP3564_16290 8b8612bbc648f4e71cfdba9efd8183a1 284 PIRSF PIRSF006230 1 284 1.0E-106 T 13-10-2018 IPR016478 GTPase, MTG1 AP3564_16290 8b8612bbc648f4e71cfdba9efd8183a1 284 TIGRFAM TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF 3 280 3.3E-117 T 13-10-2018 IPR019991 GTP-binding protein, ribosome biogenesis AP3564_16290 8b8612bbc648f4e71cfdba9efd8183a1 284 SUPERFAMILY SSF52540 9 266 3.82E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_16290 8b8612bbc648f4e71cfdba9efd8183a1 284 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 123 143 1.5E-5 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AP3564_16290 8b8612bbc648f4e71cfdba9efd8183a1 284 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 169 184 1.5E-5 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AP3564_16290 8b8612bbc648f4e71cfdba9efd8183a1 284 Pfam PF01926 50S ribosome-binding GTPase 123 209 4.4E-17 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AP3564_01365 0930fafcd5b506aa16a6b9c903ce05fa 318 Gene3D G3DSA:3.40.50.12260 189 291 4.2E-107 T 13-10-2018 AP3564_01365 0930fafcd5b506aa16a6b9c903ce05fa 318 SUPERFAMILY SSF53807 41 310 3.02E-75 T 13-10-2018 AP3564_01365 0930fafcd5b506aa16a6b9c903ce05fa 318 Gene3D G3DSA:3.40.50.12250 44 299 4.2E-107 T 13-10-2018 AP3564_01365 0930fafcd5b506aa16a6b9c903ce05fa 318 Pfam PF01497 Periplasmic binding protein 61 294 1.3E-39 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain AP3564_11095 c136bf0189648ead08826d1fffc527f2 414 Pfam PF02371 Transposase IS116/IS110/IS902 family 257 342 2.7E-15 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_11095 c136bf0189648ead08826d1fffc527f2 414 Pfam PF01548 Transposase 11 155 3.4E-23 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_14745 21ca0a02c18d27f0e2dbc8d7fb90b7c6 141 PIRSF PIRSF003230 2 139 3.3E-32 T 13-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 AP3564_14745 21ca0a02c18d27f0e2dbc8d7fb90b7c6 141 SUPERFAMILY SSF54637 3 133 1.98E-40 T 13-10-2018 IPR029069 HotDog domain superfamily AP3564_14745 21ca0a02c18d27f0e2dbc8d7fb90b7c6 141 Gene3D G3DSA:3.10.129.10 3 131 3.4E-36 T 13-10-2018 AP3564_14745 21ca0a02c18d27f0e2dbc8d7fb90b7c6 141 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 9 122 4.1E-36 T 13-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 AP3564_14745 21ca0a02c18d27f0e2dbc8d7fb90b7c6 141 Pfam PF03061 Thioesterase superfamily 18 102 7.2E-14 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AP3564_15210 f4265a035fb1521a145bb02c8d8e2fb5 168 Pfam PF14367 Domain of unknown function (DUF4411) 7 166 5.3E-53 T 13-10-2018 IPR016541 Uncharacterised conserved protein UCP008505 AP3564_15210 f4265a035fb1521a145bb02c8d8e2fb5 168 SUPERFAMILY SSF88723 7 131 1.82E-6 T 13-10-2018 IPR029060 PIN-like domain superfamily AP3564_15210 f4265a035fb1521a145bb02c8d8e2fb5 168 PIRSF PIRSF008505 5 165 5.0E-26 T 13-10-2018 IPR016541 Uncharacterised conserved protein UCP008505 AP3564_07775 a336d38042de00e16e432c5999d0c2d1 102 SUPERFAMILY SSF89447 25 95 8.69E-15 T 13-10-2018 IPR037914 SpoVT-AbrB domain superfamily AP3564_07775 a336d38042de00e16e432c5999d0c2d1 102 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 26 71 4.0E-12 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 AP3564_07775 a336d38042de00e16e432c5999d0c2d1 102 SMART SM00966 26 73 3.9E-11 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 AP3564_07775 a336d38042de00e16e432c5999d0c2d1 102 Gene3D G3DSA:2.10.260.10 17 101 1.5E-25 T 13-10-2018 AP3564_06385 4ad1eb738bc50f9684fa7f1f8fdeba12 220 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 1 202 1.7E-74 T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AP3564_06385 4ad1eb738bc50f9684fa7f1f8fdeba12 220 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 23 37 - T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AP3564_06385 4ad1eb738bc50f9684fa7f1f8fdeba12 220 Gene3D G3DSA:3.20.20.70 1 219 6.5E-75 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_06385 4ad1eb738bc50f9684fa7f1f8fdeba12 220 SUPERFAMILY SSF51366 2 209 1.41E-63 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AP3564_06385 4ad1eb738bc50f9684fa7f1f8fdeba12 220 PIRSF PIRSF001461 1 218 1.4E-75 T 13-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AP3564_06385 4ad1eb738bc50f9684fa7f1f8fdeba12 220 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 125 147 - T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AP3564_06385 4ad1eb738bc50f9684fa7f1f8fdeba12 220 Pfam PF00834 Ribulose-phosphate 3 epimerase family 2 189 2.1E-71 T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AP3564_16710 8fbccf3bd09ab02b14fd06a57b93dc60 119 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 36 117 6.3E-21 T 13-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 AP3564_16710 8fbccf3bd09ab02b14fd06a57b93dc60 119 Hamap MF_00910 Cell division protein FtsL [ftsL]. 36 118 14.26 T 13-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 AP3564_16710 8fbccf3bd09ab02b14fd06a57b93dc60 119 Pfam PF04977 Septum formation initiator 43 109 2.8E-10 T 13-10-2018 IPR007060 Septum formation initiator FtsL/DivIC AP3564_04495 0a42f51be90436cdf393a74d489c5389 435 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 328 431 1.3E-18 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_04495 0a42f51be90436cdf393a74d489c5389 435 SMART SM00387 321 433 4.0E-24 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_04495 0a42f51be90436cdf393a74d489c5389 435 SUPERFAMILY SSF55874 284 431 1.11E-30 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_04495 0a42f51be90436cdf393a74d489c5389 435 Gene3D G3DSA:3.30.565.10 282 432 3.3E-30 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_04495 0a42f51be90436cdf393a74d489c5389 435 PRINTS PR00344 Bacterial sensor protein C-terminal signature 392 410 4.3E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_04495 0a42f51be90436cdf393a74d489c5389 435 PRINTS PR00344 Bacterial sensor protein C-terminal signature 358 372 4.3E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_04495 0a42f51be90436cdf393a74d489c5389 435 PRINTS PR00344 Bacterial sensor protein C-terminal signature 417 430 4.3E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_02000 31f283a2f49885c670b932309d303d00 103 Gene3D G3DSA:3.90.1210.30 10 97 1.1E-23 T 13-10-2018 AP3564_02000 31f283a2f49885c670b932309d303d00 103 SMART SM00858 18 95 4.5E-9 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AP3564_02000 31f283a2f49885c670b932309d303d00 103 Pfam PF08666 SAF domain 18 95 5.4E-11 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AP3564_18365 ae4e2b48176560e13a68eadef8331b8b 119 Gene3D G3DSA:1.10.3830.10 1 114 4.9E-38 T 13-10-2018 IPR036945 Diacylglycerol kinase (DAGK) superfamily GO:0008610|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 AP3564_18365 ae4e2b48176560e13a68eadef8331b8b 119 Pfam PF01219 Prokaryotic diacylglycerol kinase 10 110 7.1E-35 T 13-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 AP3564_03330 f11551193c7eb031ba9b8e12e84f0828 309 SUPERFAMILY SSF48371 15 261 2.43E-5 T 13-10-2018 IPR016024 Armadillo-type fold AP3564_16250 b3892b6311f0c14819315e7cc11ec341 435 TIGRFAM TIGR00137 gid_trmFO: tRNA:m(5)U-54 methyltransferase 5 435 4.8E-237 T 13-10-2018 IPR004417 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO GO:0005737|GO:0008033|GO:0047151|GO:0050660 AP3564_16250 b3892b6311f0c14819315e7cc11ec341 435 Pfam PF01134 Glucose inhibited division protein A 6 368 3.1E-117 T 13-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 AP3564_16250 b3892b6311f0c14819315e7cc11ec341 435 Hamap MF_01037 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO [trmFO]. 6 434 36.875 T 13-10-2018 IPR004417 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO GO:0005737|GO:0008033|GO:0047151|GO:0050660 AP3564_16250 b3892b6311f0c14819315e7cc11ec341 435 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 337 360 - T 13-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 AP3564_16250 b3892b6311f0c14819315e7cc11ec341 435 Gene3D G3DSA:3.50.50.60 283 435 7.6E-53 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_16250 b3892b6311f0c14819315e7cc11ec341 435 Gene3D G3DSA:3.50.50.60 3 178 2.8E-59 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_16250 b3892b6311f0c14819315e7cc11ec341 435 SUPERFAMILY SSF51905 8 367 5.27E-30 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_18550 4a4748abc52e5dcd95e44bce19742b95 186 SMART SM00471 14 141 6.3E-9 T 13-10-2018 IPR003607 HD/PDEase domain AP3564_18550 4a4748abc52e5dcd95e44bce19742b95 186 Gene3D G3DSA:1.10.3210.10 1 185 2.8E-63 T 13-10-2018 AP3564_18550 4a4748abc52e5dcd95e44bce19742b95 186 TIGRFAM TIGR00277 HDIG: HDIG domain 17 109 1.2E-8 T 13-10-2018 IPR006675 HDIG domain AP3564_18550 4a4748abc52e5dcd95e44bce19742b95 186 SUPERFAMILY SSF109604 8 183 1.21E-38 T 13-10-2018 AP3564_18550 4a4748abc52e5dcd95e44bce19742b95 186 Pfam PF01966 HD domain 18 130 1.8E-18 T 13-10-2018 IPR006674 HD domain AP3564_18550 4a4748abc52e5dcd95e44bce19742b95 186 TIGRFAM TIGR00488 TIGR00488: putative HD superfamily hydrolase 11 180 7.0E-70 T 13-10-2018 IPR005249 Conserved hypothetical protein CHP00488 AP3564_07550 9764f40ed8f7375ef0ed2c80e2b07bbf 263 Gene3D G3DSA:3.40.50.1110 67 258 2.3E-14 T 13-10-2018 IPR036514 SGNH hydrolase superfamily AP3564_07550 9764f40ed8f7375ef0ed2c80e2b07bbf 263 SUPERFAMILY SSF52266 92 259 1.4E-14 T 13-10-2018 AP3564_09695 aaa07477ddbbd3a029940fb380c98f17 112 SUPERFAMILY SSF103481 6 100 6.02E-12 T 13-10-2018 AP3564_09695 aaa07477ddbbd3a029940fb380c98f17 112 Pfam PF00893 Small Multidrug Resistance protein 1 88 5.0E-19 T 13-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 AP3564_09695 aaa07477ddbbd3a029940fb380c98f17 112 Gene3D G3DSA:1.10.3730.20 1 105 1.6E-20 T 13-10-2018 AP3564_03150 232e77ca5ce56e1c89f1b97496f234b3 249 SMART SM00382 28 213 4.5E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_03150 232e77ca5ce56e1c89f1b97496f234b3 249 Gene3D G3DSA:3.40.50.300 1 245 1.2E-61 T 13-10-2018 AP3564_03150 232e77ca5ce56e1c89f1b97496f234b3 249 SUPERFAMILY SSF52540 3 230 1.08E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_03150 232e77ca5ce56e1c89f1b97496f234b3 249 Pfam PF00005 ABC transporter 19 162 2.6E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_06795 f6b267ae84925e3f27bcb7fe13405ddf 384 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 36 46 - T 13-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AP3564_06795 f6b267ae84925e3f27bcb7fe13405ddf 384 TIGRFAM TIGR00492 alr: alanine racemase 6 368 3.4E-128 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AP3564_06795 f6b267ae84925e3f27bcb7fe13405ddf 384 PRINTS PR00992 Alanine racemase signature 161 172 2.8E-73 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AP3564_06795 f6b267ae84925e3f27bcb7fe13405ddf 384 PRINTS PR00992 Alanine racemase signature 276 291 2.8E-73 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AP3564_06795 f6b267ae84925e3f27bcb7fe13405ddf 384 PRINTS PR00992 Alanine racemase signature 201 228 2.8E-73 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AP3564_06795 f6b267ae84925e3f27bcb7fe13405ddf 384 PRINTS PR00992 Alanine racemase signature 67 85 2.8E-73 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AP3564_06795 f6b267ae84925e3f27bcb7fe13405ddf 384 PRINTS PR00992 Alanine racemase signature 126 138 2.8E-73 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AP3564_06795 f6b267ae84925e3f27bcb7fe13405ddf 384 PRINTS PR00992 Alanine racemase signature 259 274 2.8E-73 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AP3564_06795 f6b267ae84925e3f27bcb7fe13405ddf 384 PRINTS PR00992 Alanine racemase signature 31 47 2.8E-73 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AP3564_06795 f6b267ae84925e3f27bcb7fe13405ddf 384 PRINTS PR00992 Alanine racemase signature 296 313 2.8E-73 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AP3564_06795 f6b267ae84925e3f27bcb7fe13405ddf 384 PRINTS PR00992 Alanine racemase signature 350 363 2.8E-73 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AP3564_06795 f6b267ae84925e3f27bcb7fe13405ddf 384 SUPERFAMILY SSF51419 12 232 5.61E-64 T 13-10-2018 IPR029066 PLP-binding barrel AP3564_06795 f6b267ae84925e3f27bcb7fe13405ddf 384 SUPERFAMILY SSF50621 238 377 4.53E-50 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AP3564_06795 f6b267ae84925e3f27bcb7fe13405ddf 384 Pfam PF00842 Alanine racemase, C-terminal domain 244 367 2.4E-45 T 13-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AP3564_06795 f6b267ae84925e3f27bcb7fe13405ddf 384 Hamap MF_01201 Alanine racemase. 5 368 35.871 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AP3564_06795 f6b267ae84925e3f27bcb7fe13405ddf 384 SMART SM01005 243 368 3.4E-67 T 13-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AP3564_06795 f6b267ae84925e3f27bcb7fe13405ddf 384 Pfam PF01168 Alanine racemase, N-terminal domain 12 228 5.2E-67 T 13-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AP3564_06795 f6b267ae84925e3f27bcb7fe13405ddf 384 Gene3D G3DSA:2.40.37.10 9 366 6.8E-131 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AP3564_06795 f6b267ae84925e3f27bcb7fe13405ddf 384 Gene3D G3DSA:3.20.20.10 14 223 6.8E-131 T 13-10-2018 IPR029066 PLP-binding barrel AP3564_16080 887313948fc41d73dc42b33af2d361aa 165 SUPERFAMILY SSF64438 7 163 2.01E-44 T 13-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic AP3564_16080 887313948fc41d73dc42b33af2d361aa 165 Hamap MF_01440 Chemoreceptor glutamine deamidase CheD [cheD]. 4 161 25.632 T 13-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 AP3564_16080 887313948fc41d73dc42b33af2d361aa 165 Gene3D G3DSA:3.30.1330.200 4 164 5.1E-46 T 13-10-2018 IPR038592 CheD-like superfamily AP3564_16080 887313948fc41d73dc42b33af2d361aa 165 Pfam PF03975 CheD chemotactic sensory transduction 51 157 7.4E-31 T 13-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 AP3564_08250 933395ce5171adcba0cb152b13238ac5 268 SUPERFAMILY SSF53448 2 266 3.09E-55 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AP3564_08250 933395ce5171adcba0cb152b13238ac5 268 Pfam PF01501 Glycosyl transferase family 8 3 253 6.0E-38 T 13-10-2018 IPR002495 Glycosyl transferase, family 8 GO:0016757 AP3564_08250 933395ce5171adcba0cb152b13238ac5 268 Gene3D G3DSA:3.90.550.10 2 268 3.2E-75 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AP3564_18950 3403c14a8be6b7a4b4f6559a6172f31b 311 SUPERFAMILY SSF110997 159 226 1.29E-10 T 13-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 AP3564_18950 3403c14a8be6b7a4b4f6559a6172f31b 311 Pfam PF05036 Sporulation related domain 159 225 5.9E-7 T 13-10-2018 IPR007730 Sporulation-like domain GO:0042834 AP3564_18950 3403c14a8be6b7a4b4f6559a6172f31b 311 Gene3D G3DSA:3.30.70.1070 159 227 2.8E-11 T 13-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 AP3564_03015 72b5e971c935e36649d2c43b88f51246 375 Pfam PF04286 Protein of unknown function (DUF445) 13 375 1.8E-75 T 13-10-2018 IPR007383 Protein of unknown function DUF445 AP3564_03015 72b5e971c935e36649d2c43b88f51246 375 PIRSF PIRSF032178 1 375 1.0E-116 T 13-10-2018 IPR016991 Protein of unknown function UCP032178 AP3564_11460 c6b587ef0ecd6aae09190a31c07fb53d 189 Gene3D G3DSA:3.40.50.300 2 185 4.6E-47 T 13-10-2018 AP3564_11460 c6b587ef0ecd6aae09190a31c07fb53d 189 PIRSF PIRSF006135 1 187 3.6E-44 T 13-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 AP3564_11460 c6b587ef0ecd6aae09190a31c07fb53d 189 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 3 183 3.5E-40 T 13-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 AP3564_11460 c6b587ef0ecd6aae09190a31c07fb53d 189 SUPERFAMILY SSF52540 2 185 5.02E-33 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_06280 c868ce3cd82a7a21c7c2958a5bf59bd4 727 Gene3D G3DSA:2.170.170.11 135 264 1.0E-277 T 13-10-2018 IPR023310 Malate synthase G, beta sub-domain GO:0004474 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AP3564_06280 c868ce3cd82a7a21c7c2958a5bf59bd4 727 TIGRFAM TIGR01345 malate_syn_G: malate synthase G 5 722 0.0 T 13-10-2018 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AP3564_06280 c868ce3cd82a7a21c7c2958a5bf59bd4 727 Gene3D G3DSA:3.20.20.360 10 582 1.0E-277 T 13-10-2018 AP3564_06280 c868ce3cd82a7a21c7c2958a5bf59bd4 727 Pfam PF01274 Malate synthase 18 697 1.2E-172 T 13-10-2018 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AP3564_06280 c868ce3cd82a7a21c7c2958a5bf59bd4 727 Hamap MF_00641 Malate synthase G [glcB]. 1 727 383.001 T 13-10-2018 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AP3564_06280 c868ce3cd82a7a21c7c2958a5bf59bd4 727 SUPERFAMILY SSF51645 3 723 1.96E-304 T 13-10-2018 IPR011076 Malate synthase-like superfamily GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AP3564_06280 c868ce3cd82a7a21c7c2958a5bf59bd4 727 Gene3D G3DSA:1.20.1220.12 583 727 7.8E-73 T 13-10-2018 AP3564_13210 1f9a8cdedecf6c3417fadda2c9a104e2 558 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 557 48.263 T 13-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AP3564_13210 1f9a8cdedecf6c3417fadda2c9a104e2 558 Pfam PF00920 Dehydratase family 34 553 2.8E-233 T 13-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AP3564_13210 1f9a8cdedecf6c3417fadda2c9a104e2 558 SUPERFAMILY SSF143975 4 376 4.45E-144 T 13-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AP3564_13210 1f9a8cdedecf6c3417fadda2c9a104e2 558 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 17 557 7.5E-267 T 13-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AP3564_13210 1f9a8cdedecf6c3417fadda2c9a104e2 558 SUPERFAMILY SSF52016 377 556 2.43E-62 T 13-10-2018 AP3564_13210 1f9a8cdedecf6c3417fadda2c9a104e2 558 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 13-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AP3564_13210 1f9a8cdedecf6c3417fadda2c9a104e2 558 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 465 476 - T 13-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AP3564_13210 1f9a8cdedecf6c3417fadda2c9a104e2 558 Gene3D G3DSA:3.50.30.80 377 528 1.5E-55 T 13-10-2018 AP3564_15810 dd8079ecb0de3150270eb416d3086674 184 Pfam PF10628 Outer spore coat protein E (CotE) 3 179 1.8E-68 T 13-10-2018 IPR018901 Spore coat protein CotE AP3564_07350 4b5153b06719b3ec3f56e5fb7223b50b 300 Pfam PF03547 Membrane transport protein 151 295 4.6E-15 T 13-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 AP3564_07350 4b5153b06719b3ec3f56e5fb7223b50b 300 Pfam PF03547 Membrane transport protein 7 137 1.9E-8 T 13-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 AP3564_16600 f22eb7e16c8fd3ac42afb7e48655f076 87 Pfam PF02325 YGGT family 10 76 5.4E-24 T 13-10-2018 IPR003425 CCB3/YggT GO:0016020 AP3564_13175 7e9f7bc1ce98a97b162828fe387c0f8f 335 TIGRFAM TIGR02845 spore_V_AD: stage V sporulation protein AD 5 332 5.4E-154 T 13-10-2018 IPR010894 Stage V sporulation AD AP3564_13175 7e9f7bc1ce98a97b162828fe387c0f8f 335 Gene3D G3DSA:3.40.47.40 1 335 2.6E-147 T 13-10-2018 IPR038369 Stage V sporulation AD superfamily AP3564_13175 7e9f7bc1ce98a97b162828fe387c0f8f 335 SUPERFAMILY SSF53901 44 309 1.3E-18 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AP3564_13175 7e9f7bc1ce98a97b162828fe387c0f8f 335 PIRSF PIRSF011570 1 335 8.3E-160 T 13-10-2018 IPR010894 Stage V sporulation AD AP3564_13175 7e9f7bc1ce98a97b162828fe387c0f8f 335 Pfam PF07451 Stage V sporulation protein AD (SpoVAD) 4 332 1.1E-156 T 13-10-2018 IPR010894 Stage V sporulation AD AP3564_04080 be371ec2d01ab3b18619c42df38fac80 141 Pfam PF09148 Domain of unknown function (DUF1934) 9 134 1.0E-30 T 13-10-2018 IPR015231 Protein of unknown function DUF1934 AP3564_04080 be371ec2d01ab3b18619c42df38fac80 141 Gene3D G3DSA:2.40.128.20 1 141 2.5E-40 T 13-10-2018 IPR012674 Calycin AP3564_04080 be371ec2d01ab3b18619c42df38fac80 141 SUPERFAMILY SSF50814 2 137 8.57E-33 T 13-10-2018 IPR012674 Calycin AP3564_19175 3b1325979e31cbde0b17967fcf83b929 558 Pfam PF13193 AMP-binding enzyme C-terminal domain 470 545 6.6E-22 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AP3564_19175 3b1325979e31cbde0b17967fcf83b929 558 ProSitePatterns PS00455 Putative AMP-binding domain signature. 212 223 - T 13-10-2018 IPR020845 AMP-binding, conserved site AP3564_19175 3b1325979e31cbde0b17967fcf83b929 558 Gene3D G3DSA:3.30.300.310 457 558 1.6E-34 T 13-10-2018 AP3564_19175 3b1325979e31cbde0b17967fcf83b929 558 Gene3D G3DSA:3.40.50.12780 14 452 1.7E-130 T 13-10-2018 AP3564_19175 3b1325979e31cbde0b17967fcf83b929 558 SUPERFAMILY SSF56801 15 554 3.27E-158 T 13-10-2018 AP3564_19175 3b1325979e31cbde0b17967fcf83b929 558 Pfam PF00501 AMP-binding enzyme 30 460 7.7E-115 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AP3564_03760 75f0664bd7877dbd3c9f0486c509a236 537 Pfam PF04434 SWIM zinc finger 77 98 3.3E-6 T 13-10-2018 IPR007527 Zinc finger, SWIM-type GO:0008270 AP3564_12990 4b1e56efa5729f9519ffa5738bf333bf 137 SUPERFAMILY SSF49764 47 132 7.85E-9 T 13-10-2018 IPR008978 HSP20-like chaperone AP3564_12990 4b1e56efa5729f9519ffa5738bf333bf 137 Gene3D G3DSA:2.60.40.790 41 124 4.7E-6 T 13-10-2018 IPR008978 HSP20-like chaperone AP3564_13360 c1d42842707045fb50e395e16169dbc6 607 TIGRFAM TIGR00277 HDIG: HDIG domain 251 339 1.8E-10 T 13-10-2018 IPR006675 HDIG domain AP3564_13360 c1d42842707045fb50e395e16169dbc6 607 Gene3D G3DSA:1.10.3210.10 226 412 7.7E-49 T 13-10-2018 AP3564_13360 c1d42842707045fb50e395e16169dbc6 607 SUPERFAMILY SSF109604 249 403 2.42E-26 T 13-10-2018 AP3564_13360 c1d42842707045fb50e395e16169dbc6 607 SMART SM00471 244 379 2.4E-5 T 13-10-2018 IPR003607 HD/PDEase domain AP3564_13360 c1d42842707045fb50e395e16169dbc6 607 Pfam PF13487 HD domain 299 361 5.6E-19 T 13-10-2018 AP3564_16640 c55a848d032c111e79492987309ae155 377 ProSitePatterns PS01135 FtsZ protein signature 2. 97 118 - T 13-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 AP3564_16640 c55a848d032c111e79492987309ae155 377 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 11 331 2.2E-141 T 13-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 AP3564_16640 c55a848d032c111e79492987309ae155 377 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 9 366 39.774 T 13-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 AP3564_16640 c55a848d032c111e79492987309ae155 377 ProSitePatterns PS01134 FtsZ protein signature 1. 44 78 - T 13-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 AP3564_16640 c55a848d032c111e79492987309ae155 377 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 14 173 6.8E-46 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AP3564_16640 c55a848d032c111e79492987309ae155 377 SMART SM00864 13 205 5.5E-118 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AP3564_16640 c55a848d032c111e79492987309ae155 377 PRINTS PR00423 Cell division protein FtsZ signature 189 211 9.6E-53 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AP3564_16640 c55a848d032c111e79492987309ae155 377 PRINTS PR00423 Cell division protein FtsZ signature 98 118 9.6E-53 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AP3564_16640 c55a848d032c111e79492987309ae155 377 PRINTS PR00423 Cell division protein FtsZ signature 212 233 9.6E-53 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AP3564_16640 c55a848d032c111e79492987309ae155 377 PRINTS PR00423 Cell division protein FtsZ signature 126 147 9.6E-53 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AP3564_16640 c55a848d032c111e79492987309ae155 377 SUPERFAMILY SSF55307 204 318 2.01E-44 T 13-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 AP3564_16640 c55a848d032c111e79492987309ae155 377 SMART SM00865 207 324 9.3E-56 T 13-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 AP3564_16640 c55a848d032c111e79492987309ae155 377 SUPERFAMILY SSF52490 12 208 1.57E-73 T 13-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 AP3564_16640 c55a848d032c111e79492987309ae155 377 Gene3D G3DSA:3.30.1330.20 221 333 2.2E-43 T 13-10-2018 IPR037103 Tubulin/FtsZ, C-terminal domain superfamily Reactome: R-HSA-380320 AP3564_16640 c55a848d032c111e79492987309ae155 377 Pfam PF12327 FtsZ family, C-terminal domain 222 315 2.9E-33 T 13-10-2018 IPR024757 Cell division protein FtsZ, C-terminal AP3564_16640 c55a848d032c111e79492987309ae155 377 Gene3D G3DSA:3.40.50.1440 6 220 1.2E-84 T 13-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 AP3564_03685 fc89191056479af387f30b2a1a12ca70 446 Pfam PF04932 O-Antigen ligase 239 378 2.2E-8 T 13-10-2018 IPR007016 O-antigen ligase-related AP3564_13820 b64e9d91bb5be81a66b6cccef540e9a7 426 Gene3D G3DSA:1.10.3720.10 170 425 8.5E-67 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_13820 b64e9d91bb5be81a66b6cccef540e9a7 426 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 209 412 6.9E-27 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AP3564_13820 b64e9d91bb5be81a66b6cccef540e9a7 426 SUPERFAMILY SSF161098 174 407 1.16E-55 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_13820 b64e9d91bb5be81a66b6cccef540e9a7 426 SUPERFAMILY SSF160964 72 178 1.7E-8 T 13-10-2018 AP3564_11470 0d20d3cbe6ff8416c37b08c8e94f00f6 265 TIGRFAM TIGR00317 cobS: cobalamin 5'-phosphate synthase 14 251 1.7E-36 T 13-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 AP3564_11470 0d20d3cbe6ff8416c37b08c8e94f00f6 265 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 265 35.124 T 13-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 AP3564_11470 0d20d3cbe6ff8416c37b08c8e94f00f6 265 Pfam PF02654 Cobalamin-5-phosphate synthase 14 252 6.2E-45 T 13-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 AP3564_18305 247d34e40d2bf3c2e007a89f59cfcf12 121 SUPERFAMILY SSF46626 6 119 6.77E-18 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AP3564_18305 247d34e40d2bf3c2e007a89f59cfcf12 121 PIRSF PIRSF000025 1 121 1.3E-37 T 13-10-2018 IPR012218 Cytochrome c, Bacillus subtilis c550-related GO:0005506|GO:0009055|GO:0016021|GO:0020037 AP3564_18305 247d34e40d2bf3c2e007a89f59cfcf12 121 Gene3D G3DSA:1.10.760.10 51 121 4.1E-25 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AP3564_18305 247d34e40d2bf3c2e007a89f59cfcf12 121 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 51 117 5.0E-14 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_19430 b1b13796c0e8af8a0e3f029423505599 439 SUPERFAMILY SSF46785 5 54 1.42E-6 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_19430 b1b13796c0e8af8a0e3f029423505599 439 SUPERFAMILY SSF75138 72 185 4.58E-29 T 13-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily AP3564_19430 b1b13796c0e8af8a0e3f029423505599 439 Gene3D G3DSA:3.10.580.10 186 315 1.8E-28 T 13-10-2018 AP3564_19430 b1b13796c0e8af8a0e3f029423505599 439 SUPERFAMILY SSF54637 342 438 8.75E-18 T 13-10-2018 IPR029069 HotDog domain superfamily AP3564_19430 b1b13796c0e8af8a0e3f029423505599 439 Pfam PF07085 DRTGG domain 76 178 8.0E-31 T 13-10-2018 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AP3564_19430 b1b13796c0e8af8a0e3f029423505599 439 SMART SM00116 259 307 5.8E-11 T 13-10-2018 IPR000644 CBS domain AP3564_19430 b1b13796c0e8af8a0e3f029423505599 439 SMART SM00116 200 248 3.4E-4 T 13-10-2018 IPR000644 CBS domain AP3564_19430 b1b13796c0e8af8a0e3f029423505599 439 Gene3D G3DSA:1.10.10.10 5 69 5.1E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_19430 b1b13796c0e8af8a0e3f029423505599 439 Pfam PF03061 Thioesterase superfamily 352 426 2.0E-9 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AP3564_19430 b1b13796c0e8af8a0e3f029423505599 439 Gene3D G3DSA:3.40.1390.20 70 178 3.5E-26 T 13-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily AP3564_19430 b1b13796c0e8af8a0e3f029423505599 439 Gene3D G3DSA:3.10.129.10 317 433 2.4E-10 T 13-10-2018 AP3564_19430 b1b13796c0e8af8a0e3f029423505599 439 SUPERFAMILY SSF54631 182 309 1.89E-33 T 13-10-2018 AP3564_19430 b1b13796c0e8af8a0e3f029423505599 439 Pfam PF00571 CBS domain 253 307 3.2E-10 T 13-10-2018 IPR000644 CBS domain AP3564_19430 b1b13796c0e8af8a0e3f029423505599 439 Pfam PF00571 CBS domain 191 244 4.1E-7 T 13-10-2018 IPR000644 CBS domain AP3564_19430 b1b13796c0e8af8a0e3f029423505599 439 Pfam PF13412 Winged helix-turn-helix DNA-binding 4 50 8.4E-5 T 13-10-2018 AP3564_18050 3c51ed55014acc0bf33397cdec80ae14 123 Pfam PF14173 ComG operon protein 7 30 121 1.5E-17 T 13-10-2018 IPR020372 Competence operon G protein 7, ComGG AP3564_18050 3c51ed55014acc0bf33397cdec80ae14 123 ProDom PD078266 COMPETENCE COMGG LATE MACHINERY OPERON DNA THE PART PRECURSOR PROBABLY 1 122 6.0E-15 T 13-10-2018 IPR020372 Competence operon G protein 7, ComGG AP3564_05890 f2aebf3892cf75bba9fa8be2c3cedae3 246 Gene3D G3DSA:3.30.70.580 1 105 3.9E-36 T 13-10-2018 AP3564_05890 f2aebf3892cf75bba9fa8be2c3cedae3 246 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 1 244 36.906 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 AP3564_05890 f2aebf3892cf75bba9fa8be2c3cedae3 246 SUPERFAMILY SSF55120 1 246 8.78E-88 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AP3564_05890 f2aebf3892cf75bba9fa8be2c3cedae3 246 Pfam PF01416 tRNA pseudouridine synthase 8 103 3.4E-9 T 13-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AP3564_05890 f2aebf3892cf75bba9fa8be2c3cedae3 246 Pfam PF01416 tRNA pseudouridine synthase 147 245 4.2E-33 T 13-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AP3564_05890 f2aebf3892cf75bba9fa8be2c3cedae3 246 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 2 239 6.2E-70 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 AP3564_05890 f2aebf3892cf75bba9fa8be2c3cedae3 246 Gene3D G3DSA:3.30.70.660 106 243 1.2E-49 T 13-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 AP3564_05890 f2aebf3892cf75bba9fa8be2c3cedae3 246 PIRSF PIRSF001430 1 246 4.9E-85 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 AP3564_14940 f63eff641785fe1cf39546bfb3b695a3 180 Gene3D G3DSA:1.20.1270.400 85 174 6.6E-31 T 13-10-2018 AP3564_14940 f63eff641785fe1cf39546bfb3b695a3 180 Gene3D G3DSA:1.10.10.10 2 78 1.0E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_14940 f63eff641785fe1cf39546bfb3b695a3 180 Pfam PF12840 Helix-turn-helix domain 7 62 7.1E-13 T 13-10-2018 AP3564_14940 f63eff641785fe1cf39546bfb3b695a3 180 SMART SM00418 8 88 0.0014 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AP3564_14940 f63eff641785fe1cf39546bfb3b695a3 180 SUPERFAMILY SSF46785 8 115 1.33E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_04570 e0bb93cb975222e5689077df965b95ba 780 Pfam PF13245 AAA domain 214 583 2.1E-10 T 13-10-2018 AP3564_04570 e0bb93cb975222e5689077df965b95ba 780 Gene3D G3DSA:3.40.50.300 609 777 1.9E-55 T 13-10-2018 AP3564_04570 e0bb93cb975222e5689077df965b95ba 780 SUPERFAMILY SSF52540 202 768 3.33E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_04570 e0bb93cb975222e5689077df965b95ba 780 Gene3D G3DSA:3.40.50.300 479 596 2.1E-8 T 13-10-2018 AP3564_04570 e0bb93cb975222e5689077df965b95ba 780 Gene3D G3DSA:3.40.50.300 202 448 1.9E-11 T 13-10-2018 AP3564_04570 e0bb93cb975222e5689077df965b95ba 780 Pfam PF13538 UvrD-like helicase C-terminal domain 710 756 1.8E-7 T 13-10-2018 IPR027785 UvrD-like helicase C-terminal domain AP3564_01250 2e439ba0618d3ac9f8ab5e6d11a62cb6 280 ProSitePatterns PS01081 TetR-type HTH domain signature. 20 51 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AP3564_01250 2e439ba0618d3ac9f8ab5e6d11a62cb6 280 Pfam PF00440 Bacterial regulatory proteins, tetR family 9 53 3.9E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_01250 2e439ba0618d3ac9f8ab5e6d11a62cb6 280 Gene3D G3DSA:1.10.357.10 2 189 6.0E-28 T 13-10-2018 AP3564_01250 2e439ba0618d3ac9f8ab5e6d11a62cb6 280 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 8 21 1.5E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_01250 2e439ba0618d3ac9f8ab5e6d11a62cb6 280 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 29 52 1.5E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_01250 2e439ba0618d3ac9f8ab5e6d11a62cb6 280 SUPERFAMILY SSF46689 3 70 2.84E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_08745 4ef0392181ced8b2a3b2fe660351b36e 343 Gene3D G3DSA:3.40.190.10 53 336 4.2E-63 T 13-10-2018 AP3564_08745 4ef0392181ced8b2a3b2fe660351b36e 343 Gene3D G3DSA:3.40.190.10 130 224 4.2E-63 T 13-10-2018 AP3564_08745 4ef0392181ced8b2a3b2fe660351b36e 343 Pfam PF09084 NMT1/THI5 like 59 255 5.6E-36 T 13-10-2018 IPR015168 SsuA/THI5-like AP3564_08745 4ef0392181ced8b2a3b2fe660351b36e 343 SUPERFAMILY SSF53850 48 264 2.61E-28 T 13-10-2018 AP3564_18065 b6606b707505d6d834c6428ca80caf0e 134 PIRSF PIRSF021292 1 134 2.2E-30 T 13-10-2018 IPR016785 ComG operon protein 4 GO:0030420 AP3564_09785 25fc1880356277f73b96384a557179b6 427 Gene3D G3DSA:3.20.20.60 4 407 1.8E-173 T 13-10-2018 AP3564_09785 25fc1880356277f73b96384a557179b6 427 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 9 247 5.0E-108 T 13-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 AP3564_09785 25fc1880356277f73b96384a557179b6 427 PIRSF PIRSF001362 1 427 7.7E-243 T 13-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 AP3564_09785 25fc1880356277f73b96384a557179b6 427 Pfam PF00463 Isocitrate lyase family 249 424 4.2E-48 T 13-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 AP3564_09785 25fc1880356277f73b96384a557179b6 427 Pfam PF00463 Isocitrate lyase family 12 247 2.3E-59 T 13-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 AP3564_09785 25fc1880356277f73b96384a557179b6 427 ProSitePatterns PS00161 Isocitrate lyase signature. 185 190 - T 13-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 AP3564_09785 25fc1880356277f73b96384a557179b6 427 SUPERFAMILY SSF51621 4 424 8.97E-161 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AP3564_03925 29e5ebf4d8001b2b776ed187fb77b201 75 Pfam PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter 12 64 2.5E-16 T 13-10-2018 IPR032820 Putative F0F1-ATPase subunit, Ca2+/Mg2+ transporter AP3564_05950 4485c3aeeae9d368bb5881b17985dc3d 205 Pfam PF14089 KinB-signalling pathway activation in sporulation 17 195 3.5E-81 T 13-10-2018 IPR024164 KinB-signalling pathway activation protein GO:0045881 AP3564_05950 4485c3aeeae9d368bb5881b17985dc3d 205 SMART SM01251 17 196 2.1E-119 T 13-10-2018 IPR024164 KinB-signalling pathway activation protein GO:0045881 AP3564_05950 4485c3aeeae9d368bb5881b17985dc3d 205 PIRSF PIRSF029886 1 199 2.0E-82 T 13-10-2018 IPR024164 KinB-signalling pathway activation protein GO:0045881 AP3564_15600 1c8273aa57e0ed8ccc7392ce4e3f313d 151 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 8 144 7.6E-22 T 13-10-2018 IPR009936 Protein of unknown function DUF1468 AP3564_07260 056656b0f7ed2dd9cf876e2c1c064b27 263 Pfam PF07286 Protein of unknown function (DUF1445) 112 253 3.8E-69 T 13-10-2018 IPR009906 D-glutamate cyclase AP3564_07260 056656b0f7ed2dd9cf876e2c1c064b27 263 SUPERFAMILY SSF160920 4 255 1.28E-118 T 13-10-2018 IPR038021 Putative hydro-lyase AP3564_07260 056656b0f7ed2dd9cf876e2c1c064b27 263 Gene3D G3DSA:3.40.1640.10 1 126 3.9E-46 T 13-10-2018 AP3564_07260 056656b0f7ed2dd9cf876e2c1c064b27 263 Hamap MF_01830 Putative hydro-lyase . 8 262 55.391 T 13-10-2018 IPR016938 Uncharacterised protein family UPF0317 AP3564_07260 056656b0f7ed2dd9cf876e2c1c064b27 263 Gene3D G3DSA:3.30.2040.10 127 234 7.5E-52 T 13-10-2018 AP3564_07260 056656b0f7ed2dd9cf876e2c1c064b27 263 PIRSF PIRSF029755 1 263 1.1E-128 T 13-10-2018 IPR016938 Uncharacterised protein family UPF0317 AP3564_02050 2a7ffab48e7f3655df1a540c78f5c58f 106 Gene3D G3DSA:1.10.287.1080 1 99 1.3E-23 T 13-10-2018 AP3564_02050 2a7ffab48e7f3655df1a540c78f5c58f 106 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 30 104 6.3E-13 T 13-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core AP3564_02050 2a7ffab48e7f3655df1a540c78f5c58f 106 SUPERFAMILY SSF101386 1 104 3.36E-24 T 13-10-2018 AP3564_02050 2a7ffab48e7f3655df1a540c78f5c58f 106 PIRSF PIRSF036521 1 106 5.2E-48 T 13-10-2018 IPR011411 NTP Pyrophosphohydrolase MazG-related AP3564_00165 fbd134a6f12f28c1533588107d2ffcdb 494 Pfam PF05593 RHS Repeat 60 96 5.7E-5 T 13-10-2018 IPR031325 RHS repeat AP3564_00165 fbd134a6f12f28c1533588107d2ffcdb 494 Pfam PF05593 RHS Repeat 244 274 1.4E-6 T 13-10-2018 IPR031325 RHS repeat AP3564_00165 fbd134a6f12f28c1533588107d2ffcdb 494 Pfam PF05593 RHS Repeat 81 116 7.2E-7 T 13-10-2018 IPR031325 RHS repeat AP3564_00165 fbd134a6f12f28c1533588107d2ffcdb 494 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 266 348 5.5E-22 T 13-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 AP3564_00165 fbd134a6f12f28c1533588107d2ffcdb 494 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 148 172 0.0028 T 13-10-2018 IPR006530 YD repeat AP3564_00165 fbd134a6f12f28c1533588107d2ffcdb 494 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 81 121 1.7E-7 T 13-10-2018 IPR006530 YD repeat AP3564_00165 fbd134a6f12f28c1533588107d2ffcdb 494 Gene3D G3DSA:2.180.10.10 2 95 6.1E-6 T 13-10-2018 AP3564_00165 fbd134a6f12f28c1533588107d2ffcdb 494 Gene3D G3DSA:2.180.10.10 96 347 2.8E-33 T 13-10-2018 AP3564_01760 0c7989dd8f154ebebabf178bfba37164 98 SUPERFAMILY SSF140453 3 96 4.97E-22 T 13-10-2018 IPR036689 ESAT-6-like superfamily AP3564_01760 0c7989dd8f154ebebabf178bfba37164 98 Gene3D G3DSA:1.10.287.1060 2 96 6.2E-24 T 13-10-2018 AP3564_01760 0c7989dd8f154ebebabf178bfba37164 98 Pfam PF06013 Proteins of 100 residues with WXG 4 89 1.4E-21 T 13-10-2018 IPR010310 Type VII secretion system ESAT-6-like AP3564_01760 0c7989dd8f154ebebabf178bfba37164 98 TIGRFAM TIGR03930 WXG100_ESAT6: WXG100 family type VII secretion target 4 91 8.2E-24 T 13-10-2018 IPR010310 Type VII secretion system ESAT-6-like AP3564_14730 404645b71c22d7fed1e03727801d5ee3 384 Pfam PF09587 Bacterial capsule synthesis protein PGA_cap 58 304 3.6E-76 T 13-10-2018 IPR019079 Capsule synthesis protein, CapA AP3564_14730 404645b71c22d7fed1e03727801d5ee3 384 Gene3D G3DSA:3.60.21.10 108 366 8.3E-10 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like AP3564_14730 404645b71c22d7fed1e03727801d5ee3 384 SMART SM00854 58 304 3.3E-86 T 13-10-2018 IPR019079 Capsule synthesis protein, CapA AP3564_14730 404645b71c22d7fed1e03727801d5ee3 384 SUPERFAMILY SSF56300 58 346 2.0E-45 T 13-10-2018 AP3564_01195 7932829cf11dbd46073b642ac29a83b0 219 Gene3D G3DSA:3.90.320.10 10 203 1.2E-7 T 13-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal AP3564_01195 7932829cf11dbd46073b642ac29a83b0 219 Pfam PF01930 Domain of unknown function DUF83 12 201 2.1E-32 T 13-10-2018 IPR022765 Dna2/Cas4, domain of unknown function DUF83 AP3564_01195 7932829cf11dbd46073b642ac29a83b0 219 TIGRFAM TIGR00372 cas4: CRISPR-associated protein Cas4 13 201 9.7E-33 T 13-10-2018 IPR013343 CRISPR-associated protein Cas4 AP3564_13005 294f20609165adbe20c790d7f0660006 115 SUPERFAMILY SSF89442 1 114 2.35E-52 T 13-10-2018 IPR036492 Hypothetical protein YojF superfamily AP3564_13005 294f20609165adbe20c790d7f0660006 115 Pfam PF08830 Protein of unknown function (DUF1806) 3 114 4.6E-53 T 13-10-2018 IPR014934 Protein of unknown function DUF1806 AP3564_13005 294f20609165adbe20c790d7f0660006 115 Gene3D G3DSA:2.70.180.10 1 115 1.8E-51 T 13-10-2018 IPR036492 Hypothetical protein YojF superfamily AP3564_04165 914a3fb9abc814b33b50a0705d88b32f 157 PRINTS PR01166 Cytochrome c oxidase subunit II signature 137 154 7.6E-7 T 13-10-2018 AP3564_04165 914a3fb9abc814b33b50a0705d88b32f 157 PRINTS PR01166 Cytochrome c oxidase subunit II signature 75 96 7.6E-7 T 13-10-2018 AP3564_04165 914a3fb9abc814b33b50a0705d88b32f 157 PRINTS PR01166 Cytochrome c oxidase subunit II signature 2 14 7.6E-7 T 13-10-2018 AP3564_04165 914a3fb9abc814b33b50a0705d88b32f 157 PRINTS PR01166 Cytochrome c oxidase subunit II signature 99 119 7.6E-7 T 13-10-2018 AP3564_04165 914a3fb9abc814b33b50a0705d88b32f 157 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 81 153 5.0E-12 T 13-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_04165 914a3fb9abc814b33b50a0705d88b32f 157 SUPERFAMILY SSF49503 33 154 7.19E-29 T 13-10-2018 IPR008972 Cupredoxin AP3564_04165 914a3fb9abc814b33b50a0705d88b32f 157 Gene3D G3DSA:2.60.40.420 25 155 3.1E-32 T 13-10-2018 IPR008972 Cupredoxin AP3564_04165 914a3fb9abc814b33b50a0705d88b32f 157 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 100 148 - T 13-10-2018 IPR001505 Copper centre Cu(A) GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_10495 9ff8d6967f82ac265195f74858a14324 98 Pfam PF13518 Helix-turn-helix domain 12 63 4.4E-15 T 13-10-2018 AP3564_10495 9ff8d6967f82ac265195f74858a14324 98 Gene3D G3DSA:1.10.10.60 10 98 8.7E-11 T 13-10-2018 AP3564_10495 9ff8d6967f82ac265195f74858a14324 98 SUPERFAMILY SSF46689 5 96 1.31E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_09115 99690e869fcbbe357c1034fa18c67e3b 105 Pfam PF14068 Putative membrane protein 6 105 6.9E-42 T 13-10-2018 IPR025917 Putative membrane protein YuiB AP3564_07585 04e914de15303a2f9aea5535628f81d1 123 Gene3D G3DSA:1.10.3730.20 4 122 1.5E-5 T 13-10-2018 AP3564_07585 04e914de15303a2f9aea5535628f81d1 123 SUPERFAMILY SSF103481 44 119 1.96E-11 T 13-10-2018 AP3564_07585 04e914de15303a2f9aea5535628f81d1 123 Pfam PF00892 EamA-like transporter family 38 115 1.1E-6 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AP3564_14750 990c8bfa1e02b5f338551c5a31532bad 73 TIGRFAM TIGR03090 SASP_tlp: small, acid-soluble spore protein tlp 6 71 2.1E-26 T 13-10-2018 IPR017524 Small acid-soluble spore protein, thioredoxin-like AP3564_14750 990c8bfa1e02b5f338551c5a31532bad 73 Hamap MF_01506 Small, acid-soluble spore protein Tlp [tlp]. 1 73 26.946 T 13-10-2018 IPR017524 Small acid-soluble spore protein, thioredoxin-like AP3564_17430 fdaee60bc8b57c02f0c3f4b82ecf16e9 376 Gene3D G3DSA:2.30.140.30 266 355 5.1E-31 T 13-10-2018 AP3564_17430 fdaee60bc8b57c02f0c3f4b82ecf16e9 376 Gene3D G3DSA:3.40.710.10 33 265 2.5E-92 T 13-10-2018 AP3564_17430 fdaee60bc8b57c02f0c3f4b82ecf16e9 376 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 288 350 1.1E-5 T 13-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AP3564_17430 fdaee60bc8b57c02f0c3f4b82ecf16e9 376 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 109 126 6.7E-17 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AP3564_17430 fdaee60bc8b57c02f0c3f4b82ecf16e9 376 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 136 149 6.7E-17 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AP3564_17430 fdaee60bc8b57c02f0c3f4b82ecf16e9 376 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 61 72 6.7E-17 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AP3564_17430 fdaee60bc8b57c02f0c3f4b82ecf16e9 376 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 27 249 8.2E-74 T 13-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 AP3564_17430 fdaee60bc8b57c02f0c3f4b82ecf16e9 376 SUPERFAMILY SSF56601 8 264 1.79E-70 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AP3564_01840 b6bd58f9ae55a5afc05ce9af53a940d2 267 SMART SM00382 41 189 1.8E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_01840 b6bd58f9ae55a5afc05ce9af53a940d2 267 Gene3D G3DSA:3.40.50.300 32 184 9.4E-9 T 13-10-2018 AP3564_01840 b6bd58f9ae55a5afc05ce9af53a940d2 267 SUPERFAMILY SSF52540 23 262 1.53E-26 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_01840 b6bd58f9ae55a5afc05ce9af53a940d2 267 Pfam PF13401 AAA domain 40 170 9.1E-23 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_14440 29a490607e5483537f22f7e5a78af227 286 SMART SM00382 28 207 8.2E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_14440 29a490607e5483537f22f7e5a78af227 286 Pfam PF00005 ABC transporter 19 158 6.8E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_14440 29a490607e5483537f22f7e5a78af227 286 SUPERFAMILY SSF52540 3 222 1.28E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_14440 29a490607e5483537f22f7e5a78af227 286 Gene3D G3DSA:3.40.50.300 4 226 2.0E-48 T 13-10-2018 AP3564_07390 a4ab6e52466936a582710951e93896bd 295 SUPERFAMILY SSF81345 8 270 1.44E-34 T 13-10-2018 IPR037294 ABC transporter, BtuC-like AP3564_07390 a4ab6e52466936a582710951e93896bd 295 Gene3D G3DSA:1.10.3470.10 6 276 2.1E-6 T 13-10-2018 IPR037294 ABC transporter, BtuC-like AP3564_07390 a4ab6e52466936a582710951e93896bd 295 Pfam PF00950 ABC 3 transport family 6 274 2.4E-52 T 13-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 AP3564_09950 3f67afa0c4978e832e9d15b02dca8d87 147 Pfam PF06935 Protein of unknown function (DUF1284) 21 125 5.2E-22 T 13-10-2018 IPR009702 Protein of unknown function DUF1284 AP3564_06575 7344bf34971e3b6fae2d93d14595f593 486 Gene3D G3DSA:3.40.309.10 261 452 2.3E-181 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AP3564_06575 7344bf34971e3b6fae2d93d14595f593 486 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 284 295 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AP3564_06575 7344bf34971e3b6fae2d93d14595f593 486 Gene3D G3DSA:3.40.605.10 15 479 2.3E-181 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AP3564_06575 7344bf34971e3b6fae2d93d14595f593 486 SUPERFAMILY SSF53720 10 485 1.1E-165 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AP3564_06575 7344bf34971e3b6fae2d93d14595f593 486 Pfam PF00171 Aldehyde dehydrogenase family 19 481 6.7E-174 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AP3564_14830 b2543b3d0b97fdb2cbf40ac02ea931c8 104 Gene3D G3DSA:3.10.350.10 26 98 2.3E-9 T 13-10-2018 IPR036779 LysM domain superfamily AP3564_14830 b2543b3d0b97fdb2cbf40ac02ea931c8 104 SUPERFAMILY SSF54106 37 88 4.97E-5 T 13-10-2018 AP3564_14830 b2543b3d0b97fdb2cbf40ac02ea931c8 104 SMART SM00257 37 88 0.003 T 13-10-2018 IPR018392 LysM domain AP3564_14830 b2543b3d0b97fdb2cbf40ac02ea931c8 104 Pfam PF01476 LysM domain 39 88 3.0E-8 T 13-10-2018 IPR018392 LysM domain AP3564_10150 7996222895f39a8cf3a5462b4549e5d0 394 PIRSF PIRSF007487 1 384 2.6E-80 T 13-10-2018 IPR021176 Competence-induced protein CoiA AP3564_10150 7996222895f39a8cf3a5462b4549e5d0 394 Pfam PF06054 Competence protein CoiA-like family 1 298 2.0E-65 T 13-10-2018 IPR010330 Competence-induced protein CoiA-like AP3564_08705 55e6d0b6944fcdc240675eb11aab6f25 97 Pfam PF01527 Transposase 1 77 2.2E-11 T 13-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AP3564_08705 55e6d0b6944fcdc240675eb11aab6f25 97 SUPERFAMILY SSF48295 1 55 4.87E-14 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AP3564_19325 8776d9503d01b76842c4ec965ab72aa9 214 TIGRFAM TIGR02840 spore_YtaF: putative sporulation protein YtaF 6 214 5.8E-71 T 13-10-2018 IPR014205 Sporulation protein YtaF AP3564_19325 8776d9503d01b76842c4ec965ab72aa9 214 Pfam PF02659 Putative manganese efflux pump 67 212 4.4E-11 T 13-10-2018 IPR003810 Putative manganese efflux pump AP3564_06715 eea4c24bcfc067795f4609b3cf448e06 287 SUPERFAMILY SSF54593 167 285 6.19E-27 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AP3564_06715 eea4c24bcfc067795f4609b3cf448e06 287 SUPERFAMILY SSF54593 9 171 4.7E-39 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AP3564_06715 eea4c24bcfc067795f4609b3cf448e06 287 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 172 283 1.4E-6 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AP3564_06715 eea4c24bcfc067795f4609b3cf448e06 287 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 15 126 6.6E-11 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AP3564_06715 eea4c24bcfc067795f4609b3cf448e06 287 Gene3D G3DSA:3.10.180.10 170 287 9.8E-22 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AP3564_06715 eea4c24bcfc067795f4609b3cf448e06 287 Gene3D G3DSA:3.10.180.10 11 139 4.6E-29 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AP3564_10425 7dc25749aefa0c71dccb626bc52d8c30 441 Pfam PF07690 Major Facilitator Superfamily 25 396 1.1E-26 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AP3564_10425 7dc25749aefa0c71dccb626bc52d8c30 441 SUPERFAMILY SSF103473 10 438 1.14E-54 T 13-10-2018 IPR036259 MFS transporter superfamily AP3564_10425 7dc25749aefa0c71dccb626bc52d8c30 441 Gene3D G3DSA:1.20.1250.20 20 439 1.6E-59 T 13-10-2018 AP3564_10425 7dc25749aefa0c71dccb626bc52d8c30 441 ProSitePatterns PS00217 Sugar transport proteins signature 2. 133 158 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AP3564_00630 144ab6966c3170423a8ea5dc70304d53 384 Pfam PF00465 Iron-containing alcohol dehydrogenase 8 376 1.1E-122 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 AP3564_00630 144ab6966c3170423a8ea5dc70304d53 384 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 172 200 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AP3564_00630 144ab6966c3170423a8ea5dc70304d53 384 Gene3D G3DSA:3.40.50.1970 1 183 6.5E-62 T 13-10-2018 AP3564_00630 144ab6966c3170423a8ea5dc70304d53 384 Gene3D G3DSA:1.20.1090.10 185 384 3.4E-66 T 13-10-2018 AP3564_00630 144ab6966c3170423a8ea5dc70304d53 384 SUPERFAMILY SSF56796 2 382 1.01E-123 T 13-10-2018 AP3564_01280 6386c0faf0ee4c8395803d3cef7f0bff 187 Hamap MF_00109 Shikimate kinase [aroK]. 11 177 23.902 T 13-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AP3564_01280 6386c0faf0ee4c8395803d3cef7f0bff 187 PRINTS PR01100 Shikimate kinase family signature 66 74 1.2E-15 T 13-10-2018 AP3564_01280 6386c0faf0ee4c8395803d3cef7f0bff 187 PRINTS PR01100 Shikimate kinase family signature 38 51 1.2E-15 T 13-10-2018 AP3564_01280 6386c0faf0ee4c8395803d3cef7f0bff 187 PRINTS PR01100 Shikimate kinase family signature 14 29 1.2E-15 T 13-10-2018 AP3564_01280 6386c0faf0ee4c8395803d3cef7f0bff 187 PRINTS PR01100 Shikimate kinase family signature 85 94 1.2E-15 T 13-10-2018 AP3564_01280 6386c0faf0ee4c8395803d3cef7f0bff 187 SUPERFAMILY SSF52540 12 173 9.19E-23 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_01280 6386c0faf0ee4c8395803d3cef7f0bff 187 Gene3D G3DSA:3.40.50.300 1 182 5.6E-44 T 13-10-2018 AP3564_01280 6386c0faf0ee4c8395803d3cef7f0bff 187 Pfam PF01202 Shikimate kinase 20 176 1.5E-41 T 13-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AP3564_17105 5a495717c408a6b8f6369ee093978afa 119 Pfam PF01797 Transposase IS200 like 1 114 1.0E-33 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 AP3564_17105 5a495717c408a6b8f6369ee093978afa 119 Gene3D G3DSA:3.30.70.1290 1 118 5.2E-37 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 AP3564_17105 5a495717c408a6b8f6369ee093978afa 119 SMART SM01321 2 114 1.1E-26 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 AP3564_17105 5a495717c408a6b8f6369ee093978afa 119 SUPERFAMILY SSF143422 1 115 3.66E-36 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 AP3564_11410 25ab25f79d34db94167c4ab42005ca70 193 Gene3D G3DSA:3.10.350.10 21 80 1.2E-16 T 13-10-2018 IPR036779 LysM domain superfamily AP3564_11410 25ab25f79d34db94167c4ab42005ca70 193 Gene3D G3DSA:1.10.10.2520 81 157 2.2E-31 T 13-10-2018 AP3564_11410 25ab25f79d34db94167c4ab42005ca70 193 Gene3D G3DSA:2.40.10.420 160 193 1.2E-10 T 13-10-2018 AP3564_11410 25ab25f79d34db94167c4ab42005ca70 193 SMART SM00257 30 73 1.0E-14 T 13-10-2018 IPR018392 LysM domain AP3564_11410 25ab25f79d34db94167c4ab42005ca70 193 Pfam PF01476 LysM domain 31 73 3.5E-13 T 13-10-2018 IPR018392 LysM domain AP3564_11410 25ab25f79d34db94167c4ab42005ca70 193 SUPERFAMILY SSF54106 30 73 2.75E-11 T 13-10-2018 AP3564_11410 25ab25f79d34db94167c4ab42005ca70 193 Pfam PF07486 Cell Wall Hydrolase 94 191 2.8E-27 T 13-10-2018 IPR011105 Cell wall hydrolase, SleB GO:0016787 AP3564_08015 bb5149291e2ecea6e27bdb3c4d0297c1 150 SUPERFAMILY SSF52743 1 146 3.53E-25 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 AP3564_08015 bb5149291e2ecea6e27bdb3c4d0297c1 150 Gene3D G3DSA:3.40.50.200 1 148 3.9E-28 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 AP3564_08015 bb5149291e2ecea6e27bdb3c4d0297c1 150 Pfam PF00082 Subtilase family 12 142 2.7E-16 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AP3564_18080 f7a21ed5265bc4d520620271716a5c9f 355 SMART SM00382 136 258 3.2E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_18080 f7a21ed5265bc4d520620271716a5c9f 355 Pfam PF00437 Type II/IV secretion system protein 19 275 2.2E-73 T 13-10-2018 IPR001482 Type II/IV secretion system protein AP3564_18080 f7a21ed5265bc4d520620271716a5c9f 355 Gene3D G3DSA:3.30.450.90 1 108 8.7E-32 T 13-10-2018 AP3564_18080 f7a21ed5265bc4d520620271716a5c9f 355 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 204 218 - T 13-10-2018 IPR001482 Type II/IV secretion system protein AP3564_18080 f7a21ed5265bc4d520620271716a5c9f 355 SUPERFAMILY SSF52540 4 305 6.47E-67 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_18080 f7a21ed5265bc4d520620271716a5c9f 355 Gene3D G3DSA:3.40.50.300 111 337 1.6E-66 T 13-10-2018 AP3564_09980 156e5b7d7c54a58765a28c52dc649bc8 619 SUPERFAMILY SSF51730 318 605 2.75E-70 T 13-10-2018 IPR029041 FAD-linked oxidoreductase-like AP3564_09980 156e5b7d7c54a58765a28c52dc649bc8 619 SUPERFAMILY SSF82282 2 364 1.2E-97 T 13-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 AP3564_09980 156e5b7d7c54a58765a28c52dc649bc8 619 Gene3D G3DSA:3.20.20.220 316 602 2.6E-54 T 13-10-2018 AP3564_09980 156e5b7d7c54a58765a28c52dc649bc8 619 Pfam PF02574 Homocysteine S-methyltransferase 12 284 6.6E-53 T 13-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 AP3564_09980 156e5b7d7c54a58765a28c52dc649bc8 619 Gene3D G3DSA:3.20.20.330 2 297 8.9E-82 T 13-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 AP3564_09980 156e5b7d7c54a58765a28c52dc649bc8 619 Pfam PF02219 Methylenetetrahydrofolate reductase 320 578 5.6E-29 T 13-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 AP3564_06175 f9a7ac8ac4c43c1234612d86311d212d 339 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 132 8.0E-39 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AP3564_06175 f9a7ac8ac4c43c1234612d86311d212d 339 SUPERFAMILY SSF50129 1 171 3.35E-53 T 13-10-2018 IPR011032 GroES-like superfamily AP3564_06175 f9a7ac8ac4c43c1234612d86311d212d 339 SUPERFAMILY SSF51735 135 303 1.43E-36 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_06175 f9a7ac8ac4c43c1234612d86311d212d 339 SMART SM00829 10 336 2.8E-4 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AP3564_06175 f9a7ac8ac4c43c1234612d86311d212d 339 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AP3564_06175 f9a7ac8ac4c43c1234612d86311d212d 339 Gene3D G3DSA:3.90.180.10 13 321 1.5E-103 T 13-10-2018 AP3564_06175 f9a7ac8ac4c43c1234612d86311d212d 339 Gene3D G3DSA:3.40.50.720 147 283 1.5E-103 T 13-10-2018 AP3564_06175 f9a7ac8ac4c43c1234612d86311d212d 339 Pfam PF00107 Zinc-binding dehydrogenase 172 297 2.3E-29 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AP3564_17190 eefb072784c79ce87fbf73deced6e109 148 Pfam PF00334 Nucleoside diphosphate kinase 2 135 5.9E-60 T 13-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AP3564_17190 eefb072784c79ce87fbf73deced6e109 148 SMART SM00562 1 138 1.6E-92 T 13-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AP3564_17190 eefb072784c79ce87fbf73deced6e109 148 SUPERFAMILY SSF54919 1 148 1.96E-61 T 13-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AP3564_17190 eefb072784c79ce87fbf73deced6e109 148 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 112 120 - T 13-10-2018 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AP3564_17190 eefb072784c79ce87fbf73deced6e109 148 Gene3D G3DSA:3.30.70.141 1 148 3.8E-66 T 13-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AP3564_17190 eefb072784c79ce87fbf73deced6e109 148 PRINTS PR01243 Nucleoside diphosphate kinase signature 68 85 3.1E-50 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AP3564_17190 eefb072784c79ce87fbf73deced6e109 148 PRINTS PR01243 Nucleoside diphosphate kinase signature 89 105 3.1E-50 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AP3564_17190 eefb072784c79ce87fbf73deced6e109 148 PRINTS PR01243 Nucleoside diphosphate kinase signature 4 26 3.1E-50 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AP3564_17190 eefb072784c79ce87fbf73deced6e109 148 PRINTS PR01243 Nucleoside diphosphate kinase signature 112 131 3.1E-50 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AP3564_17190 eefb072784c79ce87fbf73deced6e109 148 PRINTS PR01243 Nucleoside diphosphate kinase signature 48 67 3.1E-50 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AP3564_17190 eefb072784c79ce87fbf73deced6e109 148 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 1 136 37.695 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AP3564_00670 829122ee7907d89e156d25451655a4cd 166 SUPERFAMILY SSF54427 1 166 2.23E-43 T 13-10-2018 IPR032710 NTF2-like domain superfamily AP3564_00670 829122ee7907d89e156d25451655a4cd 166 Pfam PF00866 Ring hydroxylating beta subunit 16 157 4.3E-38 T 13-10-2018 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0006725|GO:0055114 AP3564_00670 829122ee7907d89e156d25451655a4cd 166 Gene3D G3DSA:3.10.450.50 1 166 1.5E-54 T 13-10-2018 AP3564_03360 487a43f9b67a44135bffe38896c6be96 120 Pfam PF14176 YxiJ-like protein 10 114 1.6E-42 T 13-10-2018 IPR025551 Immunity protein WapI-like AP3564_00160 487a43f9b67a44135bffe38896c6be96 120 Pfam PF14176 YxiJ-like protein 10 114 1.6E-42 T 13-10-2018 IPR025551 Immunity protein WapI-like AP3564_16905 d09b9f7d4ffe489618b74eb477eb610d 99 PIRSF PIRSF029938 1 99 3.1E-39 T 13-10-2018 IPR011229 Cell cycle protein GpsB AP3564_16905 d09b9f7d4ffe489618b74eb477eb610d 99 Pfam PF05103 DivIVA protein 8 73 4.5E-19 T 13-10-2018 IPR007793 DivIVA family AP3564_16905 d09b9f7d4ffe489618b74eb477eb610d 99 Hamap MF_02011 Cell cycle protein GpsB [gpsB]. 3 95 24.392 T 13-10-2018 IPR011229 Cell cycle protein GpsB AP3564_16905 d09b9f7d4ffe489618b74eb477eb610d 99 TIGRFAM TIGR03544 DivI1A_domain: DivIVA domain 8 41 3.5E-16 T 13-10-2018 IPR019933 DivIVA domain AP3564_03010 68cfe3f725ab952d29480bcc59ccdb00 358 Gene3D G3DSA:3.30.470.20 222 350 1.2E-13 T 13-10-2018 AP3564_03010 68cfe3f725ab952d29480bcc59ccdb00 358 Gene3D G3DSA:3.40.50.20 84 102 3.4E-7 T 13-10-2018 AP3564_03010 68cfe3f725ab952d29480bcc59ccdb00 358 Pfam PF14398 YheC/D like ATP-grasp 98 349 9.6E-70 T 13-10-2018 IPR026838 Endospore coat-associated protein YheC/D AP3564_03010 68cfe3f725ab952d29480bcc59ccdb00 358 Gene3D G3DSA:3.30.470.20 103 126 3.4E-7 T 13-10-2018 AP3564_03010 68cfe3f725ab952d29480bcc59ccdb00 358 SUPERFAMILY SSF56059 124 349 1.2E-19 T 13-10-2018 AP3564_03010 68cfe3f725ab952d29480bcc59ccdb00 358 Gene3D G3DSA:3.30.1490.20 127 190 3.4E-7 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AP3564_07930 876f8e88ae88373621c5fcada6527007 291 Pfam PF13407 Periplasmic binding protein domain 5 260 2.3E-62 T 13-10-2018 IPR025997 Periplasmic binding protein AP3564_07930 876f8e88ae88373621c5fcada6527007 291 Gene3D G3DSA:3.40.50.2300 102 239 9.6E-89 T 13-10-2018 AP3564_07930 876f8e88ae88373621c5fcada6527007 291 SUPERFAMILY SSF53822 2 280 1.88E-80 T 13-10-2018 IPR028082 Periplasmic binding protein-like I AP3564_07930 876f8e88ae88373621c5fcada6527007 291 Gene3D G3DSA:3.40.50.2300 9 263 9.6E-89 T 13-10-2018 AP3564_10115 9fe3d680653c44015aee023915d9877c 548 Gene3D G3DSA:3.10.105.10 294 515 7.4E-169 T 13-10-2018 AP3564_10115 9fe3d680653c44015aee023915d9877c 548 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 94 456 7.2E-89 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain AP3564_10115 9fe3d680653c44015aee023915d9877c 548 PIRSF PIRSF002741 2 548 1.0E-133 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AP3564_10115 9fe3d680653c44015aee023915d9877c 548 Gene3D G3DSA:3.90.76.10 82 200 7.4E-169 T 13-10-2018 AP3564_10115 9fe3d680653c44015aee023915d9877c 548 SUPERFAMILY SSF53850 51 543 9.59E-130 T 13-10-2018 AP3564_10115 9fe3d680653c44015aee023915d9877c 548 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 99 121 - T 13-10-2018 IPR023765 Solute-binding protein family 5, conserved site AP3564_10115 9fe3d680653c44015aee023915d9877c 548 Gene3D G3DSA:3.40.190.10 61 529 7.4E-169 T 13-10-2018 AP3564_03035 6c5d12f65cdd8478d3040b2d54d5f188 400 Gene3D G3DSA:3.30.300.210 239 392 1.3E-42 T 13-10-2018 IPR038501 Spore germination GerAC superfamily AP3564_03035 6c5d12f65cdd8478d3040b2d54d5f188 400 Pfam PF05504 Spore germination B3/ GerAC like, C-terminal 226 388 5.3E-40 T 13-10-2018 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 AP3564_03035 6c5d12f65cdd8478d3040b2d54d5f188 400 TIGRFAM TIGR02887 spore_ger_x_C: germination protein, Ger(x)C family 5 390 4.4E-98 T 13-10-2018 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 AP3564_04590 39fac1b16a222b12407707d80028c49f 1969 Pfam PF13401 AAA domain 297 452 5.9E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_04590 39fac1b16a222b12407707d80028c49f 1969 SUPERFAMILY SSF52540 273 533 6.91E-16 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_04590 39fac1b16a222b12407707d80028c49f 1969 Gene3D G3DSA:3.40.50.300 280 453 9.6E-12 T 13-10-2018 AP3564_11080 3dbc79356028b9efece1a373a9ae28ef 371 Gene3D G3DSA:2.60.120.10 8 366 1.3E-128 T 13-10-2018 IPR014710 RmlC-like jelly roll fold AP3564_11080 3dbc79356028b9efece1a373a9ae28ef 371 SUPERFAMILY SSF51182 10 357 3.52E-101 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily AP3564_11080 3dbc79356028b9efece1a373a9ae28ef 371 Pfam PF07883 Cupin domain 272 338 2.7E-16 T 13-10-2018 IPR013096 Cupin 2, conserved barrel AP3564_11080 3dbc79356028b9efece1a373a9ae28ef 371 Pfam PF07883 Cupin domain 99 166 1.4E-20 T 13-10-2018 IPR013096 Cupin 2, conserved barrel AP3564_09715 7522ba24d886d585938ffaf9fb0812f9 225 Pfam PF04172 LrgB-like family 10 222 5.8E-73 T 13-10-2018 IPR007300 CidB/LrgB family AP3564_18790 44fd85677b6a0eb4462d4e1b41d648d3 157 Gene3D G3DSA:3.30.70.1740 76 153 1.5E-32 T 13-10-2018 IPR038117 Bypass of forespore C, C-terminal domain superfamily AP3564_18790 44fd85677b6a0eb4462d4e1b41d648d3 157 Gene3D G3DSA:3.10.20.420 22 75 6.7E-18 T 13-10-2018 IPR038118 Bypass-of-forespore C, N-terminal domain superfamily AP3564_18790 44fd85677b6a0eb4462d4e1b41d648d3 157 Pfam PF08955 BofC C-terminal domain 76 149 1.3E-29 T 13-10-2018 IPR015050 Bypass of forespore C, C-terminal AP3564_18790 44fd85677b6a0eb4462d4e1b41d648d3 157 Pfam PF08977 Bypass of Forespore C, N terminal 24 74 6.7E-19 T 13-10-2018 IPR015071 Bypass-of-forespore C, N-terminal AP3564_08595 1bc547fde47b81589d4461a8bf372fb7 293 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 7 289 42.288 T 13-10-2018 IPR005337 RapZ-like family GO:0005524 AP3564_08595 1bc547fde47b81589d4461a8bf372fb7 293 SUPERFAMILY SSF52540 8 163 1.22E-13 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_08595 1bc547fde47b81589d4461a8bf372fb7 293 PIRSF PIRSF005052 7 292 3.0E-110 T 13-10-2018 IPR005337 RapZ-like family GO:0005524 AP3564_08595 1bc547fde47b81589d4461a8bf372fb7 293 Gene3D G3DSA:3.40.50.300 2 170 5.7E-7 T 13-10-2018 AP3564_08595 1bc547fde47b81589d4461a8bf372fb7 293 Pfam PF03668 P-loop ATPase protein family 7 290 6.8E-129 T 13-10-2018 IPR005337 RapZ-like family GO:0005524 AP3564_04290 68f4e3d6d22643049e33b005ad0c84b3 218 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 110 2.4E-23 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AP3564_04290 68f4e3d6d22643049e33b005ad0c84b3 218 SUPERFAMILY SSF161098 13 204 1.96E-50 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_04290 68f4e3d6d22643049e33b005ad0c84b3 218 Gene3D G3DSA:1.10.3720.10 1 217 4.0E-60 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_04290 68f4e3d6d22643049e33b005ad0c84b3 218 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 216 2.5E-24 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AP3564_10860 39bddfc34340dd9422bff9bccf8357d2 451 Gene3D G3DSA:3.90.220.20 1 177 1.4E-29 T 13-10-2018 AP3564_10860 39bddfc34340dd9422bff9bccf8357d2 451 SUPERFAMILY SSF116734 21 206 8.5E-40 T 13-10-2018 AP3564_10860 39bddfc34340dd9422bff9bccf8357d2 451 Pfam PF01420 Type I restriction modification DNA specificity domain 256 411 9.4E-16 T 13-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 AP3564_10860 39bddfc34340dd9422bff9bccf8357d2 451 Pfam PF01420 Type I restriction modification DNA specificity domain 28 182 2.3E-19 T 13-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 AP3564_10860 39bddfc34340dd9422bff9bccf8357d2 451 SUPERFAMILY SSF116734 226 438 3.27E-37 T 13-10-2018 AP3564_10860 39bddfc34340dd9422bff9bccf8357d2 451 Gene3D G3DSA:3.90.220.20 214 430 2.4E-48 T 13-10-2018 AP3564_10285 2e61401ef53672b224c619368c3c24c8 43 TIGRFAM TIGR01732 tiny_TM_bacill: conserved hypothetical protein 16 39 7.6E-13 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like AP3564_10285 2e61401ef53672b224c619368c3c24c8 43 Pfam PF09680 Protein of unknown function (Tiny_TM_bacill) 19 41 1.1E-11 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like AP3564_02670 f2316bc422a6f710c94d66138d675915 344 SMART SM00861 5 192 9.8E-60 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AP3564_02670 f2316bc422a6f710c94d66138d675915 344 Gene3D G3DSA:3.40.50.920 205 337 2.4E-46 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AP3564_02670 f2316bc422a6f710c94d66138d675915 344 SUPERFAMILY SSF52518 3 216 1.77E-63 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold AP3564_02670 f2316bc422a6f710c94d66138d675915 344 Pfam PF02780 Transketolase, C-terminal domain 206 328 3.0E-40 T 13-10-2018 IPR033248 Transketolase, C-terminal domain AP3564_02670 f2316bc422a6f710c94d66138d675915 344 SUPERFAMILY SSF52922 201 336 1.1E-39 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AP3564_02670 f2316bc422a6f710c94d66138d675915 344 Pfam PF02779 Transketolase, pyrimidine binding domain 4 191 5.9E-53 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AP3564_02670 f2316bc422a6f710c94d66138d675915 344 Gene3D G3DSA:3.40.50.970 3 204 6.0E-80 T 13-10-2018 AP3564_05630 47651b5389e643179ad2f2856df6f39f 142 SUPERFAMILY SSF69065 9 130 1.69E-43 T 13-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 AP3564_05630 47651b5389e643179ad2f2856df6f39f 142 Gene3D G3DSA:1.10.1520.10 4 139 2.3E-49 T 13-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 AP3564_05630 47651b5389e643179ad2f2856df6f39f 142 Hamap MF_01468 Mini-ribonuclease 3 [mrnC]. 7 133 29.942 T 13-10-2018 IPR008226 Mini-ribonuclease 3 family AP3564_05630 47651b5389e643179ad2f2856df6f39f 142 SMART SM00535 1 134 1.1E-9 T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 AP3564_05630 47651b5389e643179ad2f2856df6f39f 142 PIRSF PIRSF005520 1 137 1.3E-53 T 13-10-2018 IPR008226 Mini-ribonuclease 3 family AP3564_05630 47651b5389e643179ad2f2856df6f39f 142 Pfam PF00636 Ribonuclease III domain 17 116 2.2E-18 T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 AP3564_09830 5b4e7b48cea785eb1261824a19fdaaa5 393 Gene3D G3DSA:3.60.21.10 1 273 1.7E-77 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like AP3564_09830 5b4e7b48cea785eb1261824a19fdaaa5 393 Pfam PF00149 Calcineurin-like phosphoesterase 1 224 1.9E-14 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AP3564_09830 5b4e7b48cea785eb1261824a19fdaaa5 393 SUPERFAMILY SSF56300 1 332 1.78E-52 T 13-10-2018 AP3564_09830 5b4e7b48cea785eb1261824a19fdaaa5 393 Pfam PF12320 Type 5 capsule protein repressor C-terminal domain 276 365 9.3E-8 T 13-10-2018 IPR026843 Nuclease SbcCD subunit D, C-terminal domain AP3564_09830 5b4e7b48cea785eb1261824a19fdaaa5 393 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 1 252 1.7E-76 T 13-10-2018 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 AP3564_13390 1c5a63e6ebc0b3f01b17ee2f62d00484 560 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 46 534 7.0E-140 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 AP3564_13390 1c5a63e6ebc0b3f01b17ee2f62d00484 560 PRINTS PR01036 Tetracycline resistance protein TetB signature 48 72 4.0E-10 T 13-10-2018 AP3564_13390 1c5a63e6ebc0b3f01b17ee2f62d00484 560 PRINTS PR01036 Tetracycline resistance protein TetB signature 139 159 4.0E-10 T 13-10-2018 AP3564_13390 1c5a63e6ebc0b3f01b17ee2f62d00484 560 PRINTS PR01036 Tetracycline resistance protein TetB signature 169 193 4.0E-10 T 13-10-2018 AP3564_13390 1c5a63e6ebc0b3f01b17ee2f62d00484 560 PRINTS PR01036 Tetracycline resistance protein TetB signature 333 357 4.0E-10 T 13-10-2018 AP3564_13390 1c5a63e6ebc0b3f01b17ee2f62d00484 560 SUPERFAMILY SSF103473 44 539 1.28E-65 T 13-10-2018 IPR036259 MFS transporter superfamily AP3564_13390 1c5a63e6ebc0b3f01b17ee2f62d00484 560 Pfam PF07690 Major Facilitator Superfamily 49 440 1.5E-53 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AP3564_13390 1c5a63e6ebc0b3f01b17ee2f62d00484 560 Gene3D G3DSA:1.20.1720.10 45 242 2.2E-42 T 13-10-2018 AP3564_04780 27447b2ef468b1ef2ca8131c23e5dac2 165 Hamap MF_00984 Single-stranded DNA-binding protein. 2 107 37.779 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 AP3564_04780 27447b2ef468b1ef2ca8131c23e5dac2 165 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 1 165 1.6E-51 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 AP3564_04780 27447b2ef468b1ef2ca8131c23e5dac2 165 PIRSF PIRSF002070 1 155 5.7E-42 T 13-10-2018 AP3564_04780 27447b2ef468b1ef2ca8131c23e5dac2 165 Gene3D G3DSA:2.40.50.140 1 111 1.2E-47 T 13-10-2018 AP3564_04780 27447b2ef468b1ef2ca8131c23e5dac2 165 Pfam PF00436 Single-strand binding protein family 2 103 3.9E-39 T 13-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 AP3564_04780 27447b2ef468b1ef2ca8131c23e5dac2 165 SUPERFAMILY SSF50249 1 165 1.3E-59 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_19050 dab77e6ce7d893ed0b1740f9e7968a12 197 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 197 41.093 T 13-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 AP3564_19050 dab77e6ce7d893ed0b1740f9e7968a12 197 SUPERFAMILY SSF52016 1 193 2.75E-59 T 13-10-2018 AP3564_19050 dab77e6ce7d893ed0b1740f9e7968a12 197 Pfam PF00694 Aconitase C-terminal domain 1 123 8.0E-34 T 13-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 AP3564_19050 dab77e6ce7d893ed0b1740f9e7968a12 197 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 186 5.3E-84 T 13-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 AP3564_19050 dab77e6ce7d893ed0b1740f9e7968a12 197 Gene3D G3DSA:3.20.19.10 1 174 1.7E-75 T 13-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 AP3564_10830 c8cdf0c7411f80b3913410215a77b3c6 498 TIGRFAM TIGR02677 TIGR02677: TIGR02677 family protein 11 497 4.7E-161 T 13-10-2018 IPR013493 Conserved hypothetical protein CHP02677 AP3564_10830 c8cdf0c7411f80b3913410215a77b3c6 498 Pfam PF09660 Protein of unknown function (DUF2397) 13 489 1.0E-158 T 13-10-2018 IPR013493 Conserved hypothetical protein CHP02677 AP3564_09745 8bfb58921df1f85f1b7b5c14bb6d0e8b 104 Pfam PF03413 Peptidase propeptide and YPEB domain 29 97 7.0E-7 T 13-10-2018 IPR025711 PepSY domain AP3564_03795 77d8306edb297758a9f8d38e10d88af4 140 Gene3D G3DSA:3.10.129.10 1 140 2.0E-61 T 13-10-2018 AP3564_03795 77d8306edb297758a9f8d38e10d88af4 140 SUPERFAMILY SSF54637 1 139 1.53E-48 T 13-10-2018 IPR029069 HotDog domain superfamily AP3564_03795 77d8306edb297758a9f8d38e10d88af4 140 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 2 138 1.0E-62 T 13-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AP3564_03795 77d8306edb297758a9f8d38e10d88af4 140 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 2 140 34.321 T 13-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AP3564_03795 77d8306edb297758a9f8d38e10d88af4 140 Pfam PF07977 FabA-like domain 11 134 4.6E-37 T 13-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AP3564_04255 7fd603d420906e821a0e47583ff96ec0 646 TIGRFAM TIGR02882 QoxB: cytochrome aa3 quinol oxidase, subunit I 2 643 0.0 T 13-10-2018 IPR014233 Quinol oxidase subunit I GO:0005507|GO:0016021|GO:0016682|GO:0020037|GO:0055114 AP3564_04255 7fd603d420906e821a0e47583ff96ec0 646 PRINTS PR01165 Cytochrome c oxidase subunit I signature 44 69 1.1E-98 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_04255 7fd603d420906e821a0e47583ff96ec0 646 PRINTS PR01165 Cytochrome c oxidase subunit I signature 118 142 1.1E-98 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_04255 7fd603d420906e821a0e47583ff96ec0 646 PRINTS PR01165 Cytochrome c oxidase subunit I signature 405 424 1.1E-98 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_04255 7fd603d420906e821a0e47583ff96ec0 646 PRINTS PR01165 Cytochrome c oxidase subunit I signature 455 476 1.1E-98 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_04255 7fd603d420906e821a0e47583ff96ec0 646 PRINTS PR01165 Cytochrome c oxidase subunit I signature 192 210 1.1E-98 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_04255 7fd603d420906e821a0e47583ff96ec0 646 PRINTS PR01165 Cytochrome c oxidase subunit I signature 160 172 1.1E-98 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_04255 7fd603d420906e821a0e47583ff96ec0 646 PRINTS PR01165 Cytochrome c oxidase subunit I signature 377 395 1.1E-98 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_04255 7fd603d420906e821a0e47583ff96ec0 646 PRINTS PR01165 Cytochrome c oxidase subunit I signature 272 293 1.1E-98 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_04255 7fd603d420906e821a0e47583ff96ec0 646 PRINTS PR01165 Cytochrome c oxidase subunit I signature 342 363 1.1E-98 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_04255 7fd603d420906e821a0e47583ff96ec0 646 PRINTS PR01165 Cytochrome c oxidase subunit I signature 91 114 1.1E-98 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_04255 7fd603d420906e821a0e47583ff96ec0 646 PRINTS PR01165 Cytochrome c oxidase subunit I signature 221 240 1.1E-98 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_04255 7fd603d420906e821a0e47583ff96ec0 646 PRINTS PR01165 Cytochrome c oxidase subunit I signature 318 333 1.1E-98 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_04255 7fd603d420906e821a0e47583ff96ec0 646 SUPERFAMILY SSF81442 42 551 5.23E-182 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_04255 7fd603d420906e821a0e47583ff96ec0 646 Gene3D G3DSA:1.20.210.10 28 555 1.3E-204 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_04255 7fd603d420906e821a0e47583ff96ec0 646 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 53 499 3.4E-147 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_04255 7fd603d420906e821a0e47583ff96ec0 646 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 274 328 - T 13-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_09550 fe1d7d6d7e9a610682a61badae000c51 60 SUPERFAMILY SSF46689 1 50 2.51E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_00250 383e191c0f0f9d0e5093cd3f6fed759d 182 Gene3D G3DSA:3.40.50.360 1 177 1.9E-39 T 13-10-2018 IPR029039 Flavoprotein-like superfamily AP3564_00250 383e191c0f0f9d0e5093cd3f6fed759d 182 SUPERFAMILY SSF52218 1 173 4.81E-33 T 13-10-2018 IPR029039 Flavoprotein-like superfamily AP3564_00250 383e191c0f0f9d0e5093cd3f6fed759d 182 Pfam PF03358 NADPH-dependent FMN reductase 1 145 1.0E-29 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AP3564_09570 acfced64acc4e681e38374697126a92d 176 SMART SM00014 59 171 3.7E-18 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AP3564_09570 acfced64acc4e681e38374697126a92d 176 Pfam PF01569 PAP2 superfamily 66 172 3.1E-20 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AP3564_09570 acfced64acc4e681e38374697126a92d 176 Gene3D G3DSA:1.20.144.10 32 169 2.9E-18 T 13-10-2018 AP3564_09570 acfced64acc4e681e38374697126a92d 176 SUPERFAMILY SSF48317 8 174 1.83E-39 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily AP3564_08535 0e457f2c45c394f345bd9240be164ed3 168 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 107 140 1.5E-9 T 13-10-2018 IPR001451 Hexapeptide repeat AP3564_08535 0e457f2c45c394f345bd9240be164ed3 168 Gene3D G3DSA:2.160.10.10 43 168 1.1E-29 T 13-10-2018 AP3564_08535 0e457f2c45c394f345bd9240be164ed3 168 SUPERFAMILY SSF51161 11 160 6.65E-34 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily AP3564_18860 90f80836843bd23c9d13336d0aa441d2 431 Gene3D G3DSA:2.40.240.60 360 431 2.9E-20 T 13-10-2018 IPR036346 GTP-binding protein OBG, C-terminal domain superfamily AP3564_18860 90f80836843bd23c9d13336d0aa441d2 431 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 160 321 8.5E-15 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AP3564_18860 90f80836843bd23c9d13336d0aa441d2 431 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 161 181 8.5E-35 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AP3564_18860 90f80836843bd23c9d13336d0aa441d2 431 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 182 200 8.5E-35 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AP3564_18860 90f80836843bd23c9d13336d0aa441d2 431 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 210 225 8.5E-35 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AP3564_18860 90f80836843bd23c9d13336d0aa441d2 431 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 227 245 8.5E-35 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AP3564_18860 90f80836843bd23c9d13336d0aa441d2 431 Gene3D G3DSA:2.70.210.12 1 157 3.0E-64 T 13-10-2018 IPR036726 GTP1/OBG domain superfamily AP3564_18860 90f80836843bd23c9d13336d0aa441d2 431 Gene3D G3DSA:3.40.50.300 158 339 4.7E-62 T 13-10-2018 AP3564_18860 90f80836843bd23c9d13336d0aa441d2 431 SUPERFAMILY SSF82051 1 157 4.45E-58 T 13-10-2018 IPR036726 GTP1/OBG domain superfamily AP3564_18860 90f80836843bd23c9d13336d0aa441d2 431 SUPERFAMILY SSF102741 359 431 7.98E-25 T 13-10-2018 IPR036346 GTP-binding protein OBG, C-terminal domain superfamily AP3564_18860 90f80836843bd23c9d13336d0aa441d2 431 TIGRFAM TIGR03595 Obg_CgtA_exten: Obg family GTPase CgtA, C-terminal extension 361 429 2.0E-28 T 13-10-2018 IPR015349 GTP-binding protein OBG, C-terminal GO:0000166 AP3564_18860 90f80836843bd23c9d13336d0aa441d2 431 Pfam PF01018 GTP1/OBG 3 157 2.9E-63 T 13-10-2018 IPR006169 GTP1/OBG domain AP3564_18860 90f80836843bd23c9d13336d0aa441d2 431 SUPERFAMILY SSF52540 160 353 1.5E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_18860 90f80836843bd23c9d13336d0aa441d2 431 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 2 329 1.0E-146 T 13-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 AP3564_18860 90f80836843bd23c9d13336d0aa441d2 431 Hamap MF_01454 GTPase Obg [obg]. 1 330 49.034 T 13-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 AP3564_18860 90f80836843bd23c9d13336d0aa441d2 431 Pfam PF09269 Domain of unknown function (DUF1967) 361 429 6.0E-28 T 13-10-2018 IPR015349 GTP-binding protein OBG, C-terminal GO:0000166 AP3564_18860 90f80836843bd23c9d13336d0aa441d2 431 Pfam PF01926 50S ribosome-binding GTPase 160 283 2.6E-23 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AP3564_18860 90f80836843bd23c9d13336d0aa441d2 431 ProSitePatterns PS00905 GTP1/OBG family signature. 212 225 - T 13-10-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 AP3564_01465 d7d9c4355e2bd3c0e010eda6708cc735 55 Pfam PF03869 Arc-like DNA binding domain 2 49 6.7E-5 T 13-10-2018 IPR005569 Arc-like DNA binding domain GO:0003677 AP3564_01465 d7d9c4355e2bd3c0e010eda6708cc735 55 Gene3D G3DSA:1.10.1220.10 1 50 8.2E-12 T 13-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AP3564_01465 d7d9c4355e2bd3c0e010eda6708cc735 55 SUPERFAMILY SSF47598 2 50 1.52E-12 T 13-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 AP3564_14315 6d9eae3802433ce2601d0b268d9c861b 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 2.5E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_14315 6d9eae3802433ce2601d0b268d9c861b 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 2.5E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_14315 6d9eae3802433ce2601d0b268d9c861b 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 2.5E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_14315 6d9eae3802433ce2601d0b268d9c861b 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 2.5E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_14315 6d9eae3802433ce2601d0b268d9c861b 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 2.5E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_14315 6d9eae3802433ce2601d0b268d9c861b 285 Pfam PF00106 short chain dehydrogenase 10 198 9.8E-54 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_14315 6d9eae3802433ce2601d0b268d9c861b 285 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 4.7E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_14315 6d9eae3802433ce2601d0b268d9c861b 285 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 4.7E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_14315 6d9eae3802433ce2601d0b268d9c861b 285 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 4.7E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_14315 6d9eae3802433ce2601d0b268d9c861b 285 SUPERFAMILY SSF51735 8 280 1.16E-66 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_14315 6d9eae3802433ce2601d0b268d9c861b 285 Gene3D G3DSA:3.40.50.720 9 268 7.6E-72 T 13-10-2018 AP3564_14315 6d9eae3802433ce2601d0b268d9c861b 285 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 146 174 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AP3564_13675 f9381b8c4b413b1ed42fd65d7ca4de81 158 SUPERFAMILY SSF52833 47 150 1.36E-25 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AP3564_13675 f9381b8c4b413b1ed42fd65d7ca4de81 158 Gene3D G3DSA:3.40.30.10 49 150 1.1E-23 T 13-10-2018 AP3564_13675 f9381b8c4b413b1ed42fd65d7ca4de81 158 Pfam PF00085 Thioredoxin 61 149 1.8E-14 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 AP3564_04055 934b2357677e24b9a5aa5c3edece51ae 534 SUPERFAMILY SSF52540 1 269 5.72E-128 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_04055 934b2357677e24b9a5aa5c3edece51ae 534 Hamap MF_01227 CTP synthase [pyrG]. 2 532 53.657 T 13-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 AP3564_04055 934b2357677e24b9a5aa5c3edece51ae 534 Gene3D G3DSA:3.40.50.300 1 285 3.8E-137 T 13-10-2018 AP3564_04055 934b2357677e24b9a5aa5c3edece51ae 534 TIGRFAM TIGR00337 PyrG: CTP synthase 1 527 4.4E-266 T 13-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 AP3564_04055 934b2357677e24b9a5aa5c3edece51ae 534 Gene3D G3DSA:3.40.50.880 286 534 4.8E-108 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AP3564_04055 934b2357677e24b9a5aa5c3edece51ae 534 SUPERFAMILY SSF52317 290 532 1.02E-85 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AP3564_04055 934b2357677e24b9a5aa5c3edece51ae 534 Pfam PF00117 Glutamine amidotransferase class-I 302 527 8.5E-60 T 13-10-2018 IPR017926 Glutamine amidotransferase AP3564_04055 934b2357677e24b9a5aa5c3edece51ae 534 Pfam PF06418 CTP synthase N-terminus 3 267 3.2E-132 T 13-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 AP3564_03270 73a26fa64de555a8a260611f43573921 393 SUPERFAMILY SSF52768 4 368 2.78E-105 T 13-10-2018 IPR023696 Ureohydrolase domain superfamily AP3564_03270 73a26fa64de555a8a260611f43573921 393 PRINTS PR01272 Acetoin utilisation ACUC protein signature 106 119 2.5E-38 T 13-10-2018 IPR003085 Acetoin utilization protein AcuC GO:0045149 AP3564_03270 73a26fa64de555a8a260611f43573921 393 PRINTS PR01272 Acetoin utilisation ACUC protein signature 273 289 2.5E-38 T 13-10-2018 IPR003085 Acetoin utilization protein AcuC GO:0045149 AP3564_03270 73a26fa64de555a8a260611f43573921 393 PRINTS PR01272 Acetoin utilisation ACUC protein signature 334 350 2.5E-38 T 13-10-2018 IPR003085 Acetoin utilization protein AcuC GO:0045149 AP3564_03270 73a26fa64de555a8a260611f43573921 393 PRINTS PR01272 Acetoin utilisation ACUC protein signature 351 370 2.5E-38 T 13-10-2018 IPR003085 Acetoin utilization protein AcuC GO:0045149 AP3564_03270 73a26fa64de555a8a260611f43573921 393 PRINTS PR01272 Acetoin utilisation ACUC protein signature 15 35 2.5E-38 T 13-10-2018 IPR003085 Acetoin utilization protein AcuC GO:0045149 AP3564_03270 73a26fa64de555a8a260611f43573921 393 PRINTS PR01272 Acetoin utilisation ACUC protein signature 85 99 2.5E-38 T 13-10-2018 IPR003085 Acetoin utilization protein AcuC GO:0045149 AP3564_03270 73a26fa64de555a8a260611f43573921 393 PRINTS PR01270 Histone deacetylase superfamily signature 162 177 7.2E-18 T 13-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AP3564_03270 73a26fa64de555a8a260611f43573921 393 PRINTS PR01270 Histone deacetylase superfamily signature 129 152 7.2E-18 T 13-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AP3564_03270 73a26fa64de555a8a260611f43573921 393 PRINTS PR01270 Histone deacetylase superfamily signature 248 258 7.2E-18 T 13-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AP3564_03270 73a26fa64de555a8a260611f43573921 393 Pfam PF00850 Histone deacetylase domain 21 315 6.5E-77 T 13-10-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AP3564_03270 73a26fa64de555a8a260611f43573921 393 Gene3D G3DSA:3.40.800.20 1 371 1.5E-98 T 13-10-2018 IPR037138 Histone deacetylase domain superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AP3564_12785 0b15fe46292a4ef8930d187ee1967943 67 Gene3D G3DSA:2.40.50.140 3 66 4.6E-30 T 13-10-2018 AP3564_12785 0b15fe46292a4ef8930d187ee1967943 67 SMART SM00357 4 67 1.2E-30 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 AP3564_12785 0b15fe46292a4ef8930d187ee1967943 67 Pfam PF00313 'Cold-shock' DNA-binding domain 4 66 3.2E-30 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AP3564_12785 0b15fe46292a4ef8930d187ee1967943 67 PRINTS PR00050 Cold shock protein signature 40 58 1.6E-18 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AP3564_12785 0b15fe46292a4ef8930d187ee1967943 67 PRINTS PR00050 Cold shock protein signature 25 34 1.6E-18 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AP3564_12785 0b15fe46292a4ef8930d187ee1967943 67 PRINTS PR00050 Cold shock protein signature 5 20 1.6E-18 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AP3564_12785 0b15fe46292a4ef8930d187ee1967943 67 ProSitePatterns PS00352 'Cold-shock' domain signature. 16 34 - T 13-10-2018 IPR019844 Cold-shock conserved site AP3564_12785 0b15fe46292a4ef8930d187ee1967943 67 SUPERFAMILY SSF50249 3 66 1.49E-24 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_12785 0b15fe46292a4ef8930d187ee1967943 67 PIRSF PIRSF002599 1 67 4.0E-24 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 AP3564_04455 b85e0df3cf6a939c5ec835b0fea51404 301 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 146 166 - T 13-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site AP3564_04455 b85e0df3cf6a939c5ec835b0fea51404 301 SUPERFAMILY SSF56317 3 267 1.05E-55 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AP3564_04455 b85e0df3cf6a939c5ec835b0fea51404 301 Gene3D G3DSA:3.60.110.10 1 284 7.0E-60 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AP3564_04455 b85e0df3cf6a939c5ec835b0fea51404 301 Pfam PF00795 Carbon-nitrogen hydrolase 4 262 1.7E-28 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 AP3564_01445 1bebd654fee5525876815eacda2abf8b 148 SUPERFAMILY SSF46785 5 106 6.82E-31 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_01445 1bebd654fee5525876815eacda2abf8b 148 Gene3D G3DSA:1.10.10.10 4 146 1.8E-37 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_01445 1bebd654fee5525876815eacda2abf8b 148 Pfam PF01638 HxlR-like helix-turn-helix 17 105 8.2E-27 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type AP3564_15345 1ccda0c7cd529f74348859b3ba7765a9 426 Gene3D G3DSA:3.40.190.10 154 412 2.7E-97 T 13-10-2018 AP3564_15345 1ccda0c7cd529f74348859b3ba7765a9 426 SUPERFAMILY SSF53850 21 424 3.67E-88 T 13-10-2018 AP3564_15345 1ccda0c7cd529f74348859b3ba7765a9 426 Pfam PF01547 Bacterial extracellular solute-binding protein 50 340 2.8E-43 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein AP3564_15345 1ccda0c7cd529f74348859b3ba7765a9 426 Gene3D G3DSA:3.40.190.10 55 382 2.7E-97 T 13-10-2018 AP3564_18830 a9ccacd34bd24f42ab336ba344f27908 414 Pfam PF02371 Transposase IS116/IS110/IS902 family 259 342 3.0E-15 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_18830 a9ccacd34bd24f42ab336ba344f27908 414 Pfam PF01548 Transposase 11 155 2.8E-24 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_03250 a9ccacd34bd24f42ab336ba344f27908 414 Pfam PF02371 Transposase IS116/IS110/IS902 family 259 342 3.0E-15 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_03250 a9ccacd34bd24f42ab336ba344f27908 414 Pfam PF01548 Transposase 11 155 2.8E-24 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_09085 b18ca6e90660c4006aa7fae26f3ed26e 356 SUPERFAMILY SSF51905 4 309 1.66E-26 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_09085 b18ca6e90660c4006aa7fae26f3ed26e 356 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 225 239 7.8E-8 T 13-10-2018 AP3564_09085 b18ca6e90660c4006aa7fae26f3ed26e 356 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 143 168 7.8E-8 T 13-10-2018 AP3564_09085 b18ca6e90660c4006aa7fae26f3ed26e 356 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 7.8E-8 T 13-10-2018 AP3564_09085 b18ca6e90660c4006aa7fae26f3ed26e 356 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 266 273 7.8E-8 T 13-10-2018 AP3564_09085 b18ca6e90660c4006aa7fae26f3ed26e 356 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 288 4.6E-42 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AP3564_09085 b18ca6e90660c4006aa7fae26f3ed26e 356 Gene3D G3DSA:3.50.50.100 1 355 2.4E-80 T 13-10-2018 AP3564_09085 b18ca6e90660c4006aa7fae26f3ed26e 356 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 251 273 1.1E-6 T 13-10-2018 AP3564_09085 b18ca6e90660c4006aa7fae26f3ed26e 356 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 96 114 1.1E-6 T 13-10-2018 AP3564_09085 b18ca6e90660c4006aa7fae26f3ed26e 356 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 1.1E-6 T 13-10-2018 AP3564_09085 b18ca6e90660c4006aa7fae26f3ed26e 356 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 161 1.1E-6 T 13-10-2018 AP3564_00195 e11977e2c3ee66ff22279cbb86ef5581 289 SUPERFAMILY SSF102522 3 166 1.7E-57 T 13-10-2018 IPR023228 S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal AP3564_00195 e11977e2c3ee66ff22279cbb86ef5581 289 SUPERFAMILY SSF101852 169 275 7.45E-29 T 13-10-2018 IPR023227 S-adenosyl-l-methionine hydroxide adenosyltransferase, C-terminal AP3564_00195 e11977e2c3ee66ff22279cbb86ef5581 289 PIRSF PIRSF006779 1 277 1.1E-101 T 13-10-2018 IPR002747 SAM-dependent chlorinase/fluorinase AP3564_00195 e11977e2c3ee66ff22279cbb86ef5581 289 Gene3D G3DSA:2.40.30.90 166 284 2.7E-35 T 13-10-2018 IPR023227 S-adenosyl-l-methionine hydroxide adenosyltransferase, C-terminal AP3564_00195 e11977e2c3ee66ff22279cbb86ef5581 289 Pfam PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase 6 272 2.1E-74 T 13-10-2018 IPR002747 SAM-dependent chlorinase/fluorinase AP3564_00195 e11977e2c3ee66ff22279cbb86ef5581 289 Gene3D G3DSA:3.40.50.10790 1 165 1.7E-51 T 13-10-2018 IPR023228 S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal AP3564_16810 a9fe7a73ada1d9885914eb3889f07439 146 Pfam PF06133 Control of competence regulator ComK, YlbF/YmcA 11 115 1.1E-20 T 13-10-2018 IPR010368 Control of competence regulator ComK, YlbF/YmcA AP3564_16810 a9fe7a73ada1d9885914eb3889f07439 146 SUPERFAMILY SSF158622 5 126 3.14E-32 T 13-10-2018 IPR023378 YheA/YmcA-like domain superfamily AP3564_16810 a9fe7a73ada1d9885914eb3889f07439 146 Gene3D G3DSA:1.20.1500.10 4 126 1.8E-28 T 13-10-2018 IPR023378 YheA/YmcA-like domain superfamily AP3564_06340 03dadb9b78132b08ef29fca26b276972 107 Gene3D G3DSA:1.10.3730.20 1 107 4.2E-39 T 13-10-2018 AP3564_06340 03dadb9b78132b08ef29fca26b276972 107 SUPERFAMILY SSF103481 7 106 7.45E-22 T 13-10-2018 AP3564_06340 03dadb9b78132b08ef29fca26b276972 107 Pfam PF00893 Small Multidrug Resistance protein 3 94 7.2E-33 T 13-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 AP3564_09885 be3c1a7fa8e7959645ad7606b631d221 286 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 18 278 8.5E-99 T 13-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 AP3564_09885 be3c1a7fa8e7959645ad7606b631d221 286 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 276 7.1E-26 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AP3564_09885 be3c1a7fa8e7959645ad7606b631d221 286 SUPERFAMILY SSF161098 25 275 4.58E-56 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_09885 be3c1a7fa8e7959645ad7606b631d221 286 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 19 281 7.7E-124 T 13-10-2018 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 AP3564_09885 be3c1a7fa8e7959645ad7606b631d221 286 Gene3D G3DSA:1.10.3720.10 23 282 6.6E-69 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_00375 61292728a590bf14e0ba19c778ba29bb 183 Gene3D G3DSA:1.10.10.10 90 180 3.1E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_00375 61292728a590bf14e0ba19c778ba29bb 183 SUPERFAMILY SSF88946 3 90 3.61E-21 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AP3564_00375 61292728a590bf14e0ba19c778ba29bb 183 SUPERFAMILY SSF88659 112 177 1.15E-9 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AP3564_00375 61292728a590bf14e0ba19c778ba29bb 183 Pfam PF08281 Sigma-70, region 4 122 171 6.1E-7 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AP3564_00375 61292728a590bf14e0ba19c778ba29bb 183 Gene3D G3DSA:1.10.1740.10 1 86 1.1E-20 T 13-10-2018 AP3564_00375 61292728a590bf14e0ba19c778ba29bb 183 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 19 176 1.2E-27 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AP3564_00375 61292728a590bf14e0ba19c778ba29bb 183 Pfam PF04542 Sigma-70 region 2 23 88 1.1E-15 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AP3564_02420 bad8858672fa320df070d1adfe1d93ed 120 Pfam PF11023 Zinc-ribbon containing domain 4 114 5.5E-62 T 13-10-2018 IPR020912 Uncharacterised protein family UPF0295 GO:0005887 AP3564_02420 bad8858672fa320df070d1adfe1d93ed 120 Hamap MF_01502 UPF0295 protein . 2 116 37.307 T 13-10-2018 IPR020912 Uncharacterised protein family UPF0295 GO:0005887 AP3564_02420 bad8858672fa320df070d1adfe1d93ed 120 ProDom PD355753 MEMBRANE TRANSMEMBRANE UPF0295 BLI00901/BL05075 BT9727_0449 GK0479 BCE0593 YGZB PRECURSOR BA0538/GBAA0538/BAS0506 4 114 9.0E-49 T 13-10-2018 IPR020912 Uncharacterised protein family UPF0295 GO:0005887 AP3564_00415 c8d9cd4a51d5418f614852a7c988be92 233 SUPERFAMILY SSF52540 4 219 2.03E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_00415 c8d9cd4a51d5418f614852a7c988be92 233 SMART SM00382 28 207 1.8E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_00415 c8d9cd4a51d5418f614852a7c988be92 233 Pfam PF00005 ABC transporter 19 159 8.3E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_00415 c8d9cd4a51d5418f614852a7c988be92 233 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_00415 c8d9cd4a51d5418f614852a7c988be92 233 Gene3D G3DSA:3.40.50.300 1 229 2.7E-58 T 13-10-2018 AP3564_04150 8e38bfcf88689f39e0459f143e1a91a9 125 Gene3D G3DSA:1.10.10.2520 1 75 9.3E-6 T 13-10-2018 AP3564_04150 8e38bfcf88689f39e0459f143e1a91a9 125 Pfam PF07486 Cell Wall Hydrolase 7 112 4.9E-17 T 13-10-2018 IPR011105 Cell wall hydrolase, SleB GO:0016787 AP3564_15995 4f8d383a44cd49f0c18adca9ade6e810 718 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 146 194 6.1E-14 T 13-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal AP3564_15995 4f8d383a44cd49f0c18adca9ade6e810 718 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 1 50 1.9E-14 T 13-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal AP3564_15995 4f8d383a44cd49f0c18adca9ade6e810 718 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 136 718 6.3E-286 T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 AP3564_15995 4f8d383a44cd49f0c18adca9ade6e810 718 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 718 17.807 T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 AP3564_15995 4f8d383a44cd49f0c18adca9ade6e810 718 Gene3D G3DSA:2.40.30.10 392 509 2.1E-43 T 13-10-2018 AP3564_15995 4f8d383a44cd49f0c18adca9ade6e810 718 SUPERFAMILY SSF52540 210 393 5.57E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_15995 4f8d383a44cd49f0c18adca9ade6e810 718 SUPERFAMILY SSF50447 393 475 6.86E-27 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AP3564_15995 4f8d383a44cd49f0c18adca9ade6e810 718 Pfam PF11987 Translation-initiation factor 2 506 610 1.5E-38 T 13-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 AP3564_15995 4f8d383a44cd49f0c18adca9ade6e810 718 Gene3D G3DSA:3.40.50.300 217 391 5.4E-77 T 13-10-2018 AP3564_15995 4f8d383a44cd49f0c18adca9ade6e810 718 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 222 379 1.2E-39 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AP3564_15995 4f8d383a44cd49f0c18adca9ade6e810 718 SUPERFAMILY SSF50447 621 717 9.36E-35 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AP3564_15995 4f8d383a44cd49f0c18adca9ade6e810 718 ProSitePatterns PS01176 Initiation factor 2 signature. 671 693 - T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 AP3564_15995 4f8d383a44cd49f0c18adca9ade6e810 718 SUPERFAMILY SSF52156 498 627 9.81E-41 T 13-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily AP3564_15995 4f8d383a44cd49f0c18adca9ade6e810 718 Gene3D G3DSA:1.10.10.2480 1 69 1.1E-14 T 13-10-2018 AP3564_15995 4f8d383a44cd49f0c18adca9ade6e810 718 Pfam PF00009 Elongation factor Tu GTP binding domain 225 381 2.5E-37 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AP3564_15995 4f8d383a44cd49f0c18adca9ade6e810 718 Gene3D G3DSA:2.40.30.10 622 718 7.2E-36 T 13-10-2018 AP3564_15995 4f8d383a44cd49f0c18adca9ade6e810 718 Gene3D G3DSA:3.40.50.10050 514 621 2.3E-40 T 13-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily AP3564_07860 0d0e670c80104b38ca5141e3d8497ff9 330 SUPERFAMILY SSF51735 3 156 3.63E-53 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_07860 0d0e670c80104b38ca5141e3d8497ff9 330 Gene3D G3DSA:3.30.360.10 122 327 9.3E-53 T 13-10-2018 AP3564_07860 0d0e670c80104b38ca5141e3d8497ff9 330 Gene3D G3DSA:3.40.50.720 1 119 3.9E-37 T 13-10-2018 AP3564_07860 0d0e670c80104b38ca5141e3d8497ff9 330 SUPERFAMILY SSF55347 128 295 6.38E-41 T 13-10-2018 AP3564_07860 0d0e670c80104b38ca5141e3d8497ff9 330 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 121 5.7E-24 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AP3564_13655 07f196aa42e44a96bffe32e89540bfe8 427 Pfam PF01548 Transposase 19 179 8.2E-38 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_13655 07f196aa42e44a96bffe32e89540bfe8 427 Pfam PF02371 Transposase IS116/IS110/IS902 family 287 371 1.8E-23 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_15440 d56d580670b14fb2d7777ddd3e994147 831 Pfam PF04411 PD-(D/E)XK nuclease superfamily 402 557 1.9E-48 T 13-10-2018 IPR007505 PD-(D/E)XK nuclease superfamily 7 AP3564_15440 d56d580670b14fb2d7777ddd3e994147 831 Pfam PF09823 Domain of unknown function (DUF2357) 126 379 2.2E-79 T 13-10-2018 IPR018633 Domain of unknown function DUF2357 AP3564_05930 42c229ddcc839b1eb93144cab777c37b 638 Pfam PF12245 Bacterial Ig-like domain (group 3) 536 550 3.6 T 13-10-2018 IPR022038 Bacterial Ig-like domain AP3564_05930 42c229ddcc839b1eb93144cab777c37b 638 Pfam PF12245 Bacterial Ig-like domain (group 3) 452 466 2.9 T 13-10-2018 IPR022038 Bacterial Ig-like domain AP3564_05930 42c229ddcc839b1eb93144cab777c37b 638 Pfam PF12245 Bacterial Ig-like domain (group 3) 368 382 3.1 T 13-10-2018 IPR022038 Bacterial Ig-like domain AP3564_05930 42c229ddcc839b1eb93144cab777c37b 638 Gene3D G3DSA:2.60.40.10 221 298 1.8E-10 T 13-10-2018 IPR013783 Immunoglobulin-like fold AP3564_05930 42c229ddcc839b1eb93144cab777c37b 638 Gene3D G3DSA:2.60.40.10 388 464 7.1E-15 T 13-10-2018 IPR013783 Immunoglobulin-like fold AP3564_05930 42c229ddcc839b1eb93144cab777c37b 638 Gene3D G3DSA:2.60.40.10 556 632 5.5E-11 T 13-10-2018 IPR013783 Immunoglobulin-like fold AP3564_05930 42c229ddcc839b1eb93144cab777c37b 638 Gene3D G3DSA:2.60.40.10 472 548 3.8E-15 T 13-10-2018 IPR013783 Immunoglobulin-like fold AP3564_05930 42c229ddcc839b1eb93144cab777c37b 638 Gene3D G3DSA:2.60.40.10 304 380 2.2E-14 T 13-10-2018 IPR013783 Immunoglobulin-like fold AP3564_05930 42c229ddcc839b1eb93144cab777c37b 638 Pfam PF10460 Peptidase M30 4 169 4.4E-10 T 13-10-2018 IPR019501 Peptidase M30, hyicolysin AP3564_15900 dfbd9ae8c174cf1e6e121b18ed308e1a 371 Pfam PF01609 Transposase DDE domain 121 329 6.7E-30 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_15900 dfbd9ae8c174cf1e6e121b18ed308e1a 371 Pfam PF14294 Domain of unknown function (DUF4372) 8 76 8.0E-8 T 13-10-2018 IPR025399 Domain of unknown function DUF4372 AP3564_15900 dfbd9ae8c174cf1e6e121b18ed308e1a 371 SUPERFAMILY SSF53098 88 359 1.44E-35 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_17560 1d39114cdd1e5ebb71136a1bbdfaa8f2 154 Gene3D G3DSA:1.10.10.10 1 87 2.4E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_17560 1d39114cdd1e5ebb71136a1bbdfaa8f2 154 Pfam PF01475 Ferric uptake regulator family 15 136 4.3E-40 T 13-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 AP3564_17560 1d39114cdd1e5ebb71136a1bbdfaa8f2 154 Gene3D G3DSA:3.30.1490.190 93 152 2.4E-17 T 13-10-2018 AP3564_17560 1d39114cdd1e5ebb71136a1bbdfaa8f2 154 SUPERFAMILY SSF46785 6 141 2.18E-38 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_16715 1022fea2710e6ed863023048f6cd99b5 311 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 4 309 38.702 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 AP3564_16715 1022fea2710e6ed863023048f6cd99b5 311 Gene3D G3DSA:1.10.150.170 110 214 2.9E-107 T 13-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 AP3564_16715 1022fea2710e6ed863023048f6cd99b5 311 Gene3D G3DSA:3.40.50.150 4 307 2.9E-107 T 13-10-2018 AP3564_16715 1022fea2710e6ed863023048f6cd99b5 311 Pfam PF01795 MraW methylase family 2 309 1.5E-133 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 AP3564_16715 1022fea2710e6ed863023048f6cd99b5 311 SUPERFAMILY SSF53335 4 309 2.3E-47 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_16715 1022fea2710e6ed863023048f6cd99b5 311 PIRSF PIRSF004486 2 310 2.5E-113 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 AP3564_16715 1022fea2710e6ed863023048f6cd99b5 311 SUPERFAMILY SSF81799 112 213 1.29E-35 T 13-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 AP3564_16715 1022fea2710e6ed863023048f6cd99b5 311 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 3 308 2.9E-128 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 AP3564_01495 09f72e0ebe64f591a78278637d170427 186 TIGRFAM TIGR02357 ECF_ThiT_YuaJ: energy-coupled thiamine transporter ThiT 7 185 8.4E-62 T 13-10-2018 IPR012651 Thiamine transporter ThiT GO:0005886|GO:0015234|GO:0015888 AP3564_01495 09f72e0ebe64f591a78278637d170427 186 Gene3D G3DSA:1.10.1760.20 3 186 3.6E-57 T 13-10-2018 AP3564_01495 09f72e0ebe64f591a78278637d170427 186 Pfam PF09515 Thiamine transporter protein (Thia_YuaJ) 9 184 6.2E-66 T 13-10-2018 IPR012651 Thiamine transporter ThiT GO:0005886|GO:0015234|GO:0015888 AP3564_00570 95eb7b54619acae7daefb58454ebeac7 486 SUPERFAMILY SSF47203 263 479 5.44E-65 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AP3564_00570 95eb7b54619acae7daefb58454ebeac7 486 TIGRFAM TIGR02309 HpaB-1: 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component 3 479 9.4E-235 T 13-10-2018 IPR012687 4-HPA 3-monooxygenase large component, Deinococcus-type GO:0010124|GO:0016712|GO:0050660 KEGG: 00350+1.14.14.9|MetaCyc: PWY-7431 AP3564_00570 95eb7b54619acae7daefb58454ebeac7 486 Gene3D G3DSA:1.10.3140.10 3 143 2.5E-51 T 13-10-2018 AP3564_00570 95eb7b54619acae7daefb58454ebeac7 486 PIRSF PIRSF000331 1 485 8.4E-181 T 13-10-2018 IPR004925 HpaB/PvcC/4-BUDH AP3564_00570 95eb7b54619acae7daefb58454ebeac7 486 Pfam PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal 279 479 1.5E-68 T 13-10-2018 IPR024719 HpaB/PvcC/4-BUDH C-terminal AP3564_00570 95eb7b54619acae7daefb58454ebeac7 486 Gene3D G3DSA:2.40.110.10 144 274 6.8E-48 T 13-10-2018 AP3564_00570 95eb7b54619acae7daefb58454ebeac7 486 Pfam PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal 5 272 9.4E-103 T 13-10-2018 IPR024674 HpaB/PvcC/4-BUDH N-terminal AP3564_00570 95eb7b54619acae7daefb58454ebeac7 486 SUPERFAMILY SSF56645 4 273 2.36E-84 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AP3564_00570 95eb7b54619acae7daefb58454ebeac7 486 Gene3D G3DSA:1.20.140.10 275 485 3.3E-79 T 13-10-2018 AP3564_09680 8232893346847537a11431e2f748b998 433 PIRSF PIRSF005353 1 431 9.4E-170 T 13-10-2018 IPR026033 Purine permease PbuG-like AP3564_09680 8232893346847537a11431e2f748b998 433 Pfam PF00860 Permease family 14 393 1.5E-66 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 AP3564_17075 5501d2a2472d3f6752d57309091595b9 486 PRINTS PR00175 Sodium/alanine symporter signature 418 438 3.1E-61 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AP3564_17075 5501d2a2472d3f6752d57309091595b9 486 PRINTS PR00175 Sodium/alanine symporter signature 86 108 3.1E-61 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AP3564_17075 5501d2a2472d3f6752d57309091595b9 486 PRINTS PR00175 Sodium/alanine symporter signature 176 194 3.1E-61 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AP3564_17075 5501d2a2472d3f6752d57309091595b9 486 PRINTS PR00175 Sodium/alanine symporter signature 204 223 3.1E-61 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AP3564_17075 5501d2a2472d3f6752d57309091595b9 486 PRINTS PR00175 Sodium/alanine symporter signature 295 313 3.1E-61 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AP3564_17075 5501d2a2472d3f6752d57309091595b9 486 PRINTS PR00175 Sodium/alanine symporter signature 355 377 3.1E-61 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AP3564_17075 5501d2a2472d3f6752d57309091595b9 486 TIGRFAM TIGR00835 agcS: amino acid carrier protein 13 449 2.6E-153 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AP3564_17075 5501d2a2472d3f6752d57309091595b9 486 Pfam PF01235 Sodium:alanine symporter family 48 460 2.3E-162 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AP3564_00545 7a438933257810e2cc1f10fb57755c66 536 Pfam PF01609 Transposase DDE domain 192 465 1.7E-22 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_00545 7a438933257810e2cc1f10fb57755c66 536 SUPERFAMILY SSF53098 173 478 2.5E-11 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_15420 7a438933257810e2cc1f10fb57755c66 536 Pfam PF01609 Transposase DDE domain 192 465 1.7E-22 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_15420 7a438933257810e2cc1f10fb57755c66 536 SUPERFAMILY SSF53098 173 478 2.5E-11 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_03240 87ed4b5861a79aaa884e8ad9179dce7c 371 Pfam PF02073 Thermophilic metalloprotease (M29) 3 335 6.7E-65 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 AP3564_03240 87ed4b5861a79aaa884e8ad9179dce7c 371 Gene3D G3DSA:3.40.1830.10 3 165 1.5E-14 T 13-10-2018 IPR035097 Peptidase M29, N-terminal AP3564_03240 87ed4b5861a79aaa884e8ad9179dce7c 371 SUPERFAMILY SSF144052 2 360 1.02E-117 T 13-10-2018 AP3564_09095 0e14fc563e73a7ffe0a15e64f5fafcb2 290 Gene3D G3DSA:3.10.310.10 126 274 5.0E-111 T 13-10-2018 AP3564_09095 0e14fc563e73a7ffe0a15e64f5fafcb2 290 SUPERFAMILY SSF54506 3 287 7.27E-52 T 13-10-2018 AP3564_09095 0e14fc563e73a7ffe0a15e64f5fafcb2 290 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 4 284 38.251 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AP3564_09095 0e14fc563e73a7ffe0a15e64f5fafcb2 290 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 67 81 - T 13-10-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AP3564_09095 0e14fc563e73a7ffe0a15e64f5fafcb2 290 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 5 283 3.5E-98 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AP3564_09095 0e14fc563e73a7ffe0a15e64f5fafcb2 290 Pfam PF01678 Diaminopimelate epimerase 161 276 1.0E-32 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AP3564_09095 0e14fc563e73a7ffe0a15e64f5fafcb2 290 Pfam PF01678 Diaminopimelate epimerase 6 130 9.1E-36 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AP3564_09095 0e14fc563e73a7ffe0a15e64f5fafcb2 290 Gene3D G3DSA:3.10.310.10 6 280 5.0E-111 T 13-10-2018 AP3564_13160 832f185fa50d0ff037ec3895dbf8abb8 68 Pfam PF07870 Protein of unknown function (DUF1657) 7 55 1.0E-21 T 13-10-2018 IPR012452 Protein of unknown function DUF1657 AP3564_01920 984b8e96cb2c7c365a01b2d93153953c 283 Gene3D G3DSA:3.40.50.300 2 237 1.9E-48 T 13-10-2018 AP3564_01920 984b8e96cb2c7c365a01b2d93153953c 283 SMART SM00382 29 208 1.3E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_01920 984b8e96cb2c7c365a01b2d93153953c 283 SUPERFAMILY SSF52540 3 223 5.03E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_01920 984b8e96cb2c7c365a01b2d93153953c 283 Pfam PF00005 ABC transporter 20 158 6.3E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_19205 44c79bfd77ece613b87da53ed99e722a 85 Pfam PF05164 Cell division protein ZapA 10 82 8.4E-17 T 13-10-2018 IPR007838 Cell division protein ZapA-like AP3564_19205 44c79bfd77ece613b87da53ed99e722a 85 SUPERFAMILY SSF102829 10 84 1.7E-19 T 13-10-2018 IPR036192 Cell division protein ZapA-like superfamily AP3564_06585 c4aa06dd45c1b1f921e732af9cc04756 312 Pfam PF04909 Amidohydrolase 84 300 7.8E-30 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AP3564_06585 c4aa06dd45c1b1f921e732af9cc04756 312 Gene3D G3DSA:3.20.20.140 2 307 5.1E-71 T 13-10-2018 AP3564_06585 c4aa06dd45c1b1f921e732af9cc04756 312 SUPERFAMILY SSF51556 3 299 5.73E-61 T 13-10-2018 IPR032466 Metal-dependent hydrolase AP3564_17150 588efbc9b164c2dd9f64e847ca30681f 212 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 4 208 1.3E-44 T 13-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 AP3564_17150 588efbc9b164c2dd9f64e847ca30681f 212 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 2 212 31.433 T 13-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 AP3564_17150 588efbc9b164c2dd9f64e847ca30681f 212 SUPERFAMILY SSF51366 3 211 1.73E-45 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AP3564_17150 588efbc9b164c2dd9f64e847ca30681f 212 Gene3D G3DSA:3.20.20.70 1 212 1.6E-55 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_17385 6d3710167b6ebca80e5b668694ea0122 194 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 4 180 1.8E-66 T 13-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 AP3564_17385 6d3710167b6ebca80e5b668694ea0122 194 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 9 181 2.0E-62 T 13-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 AP3564_17385 6d3710167b6ebca80e5b668694ea0122 194 Pfam PF01923 Cobalamin adenosyltransferase 4 168 3.3E-58 T 13-10-2018 IPR016030 Cobalamin adenosyltransferase-like KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 AP3564_17385 6d3710167b6ebca80e5b668694ea0122 194 SUPERFAMILY SSF89028 1 180 1.47E-64 T 13-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 AP3564_17385 6d3710167b6ebca80e5b668694ea0122 194 Gene3D G3DSA:1.20.1200.10 12 194 5.3E-68 T 13-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 AP3564_12195 ee5447596251e35a381b7ac0777a4339 171 SUPERFAMILY SSF47741 85 162 6.02E-33 T 13-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily AP3564_12195 ee5447596251e35a381b7ac0777a4339 171 Pfam PF01799 [2Fe-2S] binding domain 85 156 6.2E-32 T 13-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AP3564_12195 ee5447596251e35a381b7ac0777a4339 171 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 51 59 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AP3564_12195 ee5447596251e35a381b7ac0777a4339 171 Gene3D G3DSA:1.10.150.120 88 170 6.5E-33 T 13-10-2018 AP3564_12195 ee5447596251e35a381b7ac0777a4339 171 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 17 65 1.5E-6 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AP3564_12195 ee5447596251e35a381b7ac0777a4339 171 Gene3D G3DSA:3.10.20.30 6 87 2.0E-29 T 13-10-2018 IPR012675 Beta-grasp domain superfamily AP3564_12195 ee5447596251e35a381b7ac0777a4339 171 SUPERFAMILY SSF54292 13 90 3.15E-24 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AP3564_12510 87f5b5a0549c2841aace7bec4954b3d6 208 PIRSF PIRSF006324 1 208 8.3E-50 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AP3564_12510 87f5b5a0549c2841aace7bec4954b3d6 208 Pfam PF01810 LysE type translocator 15 205 2.9E-32 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AP3564_00835 27eeed21f3d430071977361d9bb3a2b6 62 Pfam PF09680 Protein of unknown function (Tiny_TM_bacill) 37 59 7.7E-12 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like AP3564_00835 27eeed21f3d430071977361d9bb3a2b6 62 TIGRFAM TIGR01732 tiny_TM_bacill: conserved hypothetical protein 34 60 3.6E-8 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like AP3564_06510 823861c929e440dd073a853de6b384e1 360 Gene3D G3DSA:3.20.20.300 1 326 1.3E-104 T 13-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 AP3564_06510 823861c929e440dd073a853de6b384e1 360 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 3 322 6.9E-87 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AP3564_06510 823861c929e440dd073a853de6b384e1 360 SUPERFAMILY SSF51445 1 352 5.47E-82 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily AP3564_03680 48b06799cd4fad77433eb7ad32284e76 396 Gene3D G3DSA:3.40.50.2000 3 223 5.8E-8 T 13-10-2018 AP3564_03680 48b06799cd4fad77433eb7ad32284e76 396 Gene3D G3DSA:3.40.50.2000 224 374 2.1E-6 T 13-10-2018 AP3564_03680 48b06799cd4fad77433eb7ad32284e76 396 SUPERFAMILY SSF53756 6 313 4.46E-14 T 13-10-2018 AP3564_14285 3aace04905c654c816209ab8567e5e78 224 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 22 208 2.7E-22 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AP3564_14285 3aace04905c654c816209ab8567e5e78 224 Gene3D G3DSA:1.10.3720.10 2 221 2.1E-62 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_14285 3aace04905c654c816209ab8567e5e78 224 SUPERFAMILY SSF161098 5 214 4.58E-51 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_14285 3aace04905c654c816209ab8567e5e78 224 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 7 216 1.4E-78 T 13-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 AP3564_10590 606b980ac833c6a392772448937debaa 561 Gene3D G3DSA:3.90.400.10 105 175 4.1E-209 T 13-10-2018 AP3564_10590 606b980ac833c6a392772448937debaa 561 Gene3D G3DSA:2.60.40.1180 481 561 2.5E-25 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta AP3564_10590 606b980ac833c6a392772448937debaa 561 Pfam PF16657 Maltogenic Amylase, C-terminal domain 480 554 2.2E-8 T 13-10-2018 IPR032091 Maltogenic Amylase, C-terminal AP3564_10590 606b980ac833c6a392772448937debaa 561 Gene3D G3DSA:3.20.20.80 5 472 4.1E-209 T 13-10-2018 AP3564_10590 606b980ac833c6a392772448937debaa 561 Pfam PF00128 Alpha amylase, catalytic domain 28 377 9.1E-134 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AP3564_10590 606b980ac833c6a392772448937debaa 561 TIGRFAM TIGR02403 trehalose_treC: alpha,alpha-phosphotrehalase 5 558 7.8E-275 T 13-10-2018 IPR012769 Trehalose-6-phosphate hydrolase GO:0005737|GO:0005993|GO:0008788 KEGG: 00500+3.2.1.93 AP3564_10590 606b980ac833c6a392772448937debaa 561 SUPERFAMILY SSF51011 480 559 1.38E-18 T 13-10-2018 AP3564_10590 606b980ac833c6a392772448937debaa 561 SUPERFAMILY SSF51445 3 477 1.61E-164 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily AP3564_10590 606b980ac833c6a392772448937debaa 561 SMART SM00642 13 419 3.4E-169 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AP3564_18475 56ba1c8693a379a6ac469dcf93e001e1 341 Gene3D G3DSA:1.10.10.10 1 85 4.3E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_18475 56ba1c8693a379a6ac469dcf93e001e1 341 SUPERFAMILY SSF46785 2 84 1.36E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_18475 56ba1c8693a379a6ac469dcf93e001e1 341 TIGRFAM TIGR00331 hrcA: heat-inducible transcription repressor HrcA 3 334 2.1E-112 T 13-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 AP3564_18475 56ba1c8693a379a6ac469dcf93e001e1 341 Hamap MF_00081 Heat-inducible transcription repressor HrcA [hrcA]. 1 328 33.836 T 13-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 AP3564_18475 56ba1c8693a379a6ac469dcf93e001e1 341 Gene3D G3DSA:3.30.390.60 128 228 1.1E-63 T 13-10-2018 IPR023120 Winged helix-turn-helix transcription repressor, HrcA, inserted dimerising domain superfamily AP3564_18475 56ba1c8693a379a6ac469dcf93e001e1 341 Gene3D G3DSA:3.30.450.40 104 335 1.1E-63 T 13-10-2018 IPR029016 GAF-like domain superfamily AP3564_18475 56ba1c8693a379a6ac469dcf93e001e1 341 Pfam PF01628 HrcA protein C terminal domain 104 321 1.6E-67 T 13-10-2018 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal GO:0003677|GO:0006355 AP3564_18475 56ba1c8693a379a6ac469dcf93e001e1 341 SUPERFAMILY SSF55781 71 338 4.51E-71 T 13-10-2018 AP3564_18475 56ba1c8693a379a6ac469dcf93e001e1 341 PIRSF PIRSF005485 1 339 3.4E-123 T 13-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 AP3564_07005 6864097284812362e623359a007e030e 76 Pfam PF05675 Protein of unknown function (DUF817) 1 55 2.6E-24 T 13-10-2018 IPR008535 Protein of unknown function DUF817 AP3564_09075 1b37713843d9bf3074d3125e6ebb20d1 78 SUPERFAMILY SSF117916 2 77 5.89E-27 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily AP3564_09075 1b37713843d9bf3074d3125e6ebb20d1 78 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 14 77 2.0E-28 T 13-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 AP3564_09075 1b37713843d9bf3074d3125e6ebb20d1 78 Pfam PF01106 NifU-like domain 10 75 6.0E-28 T 13-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 AP3564_09075 1b37713843d9bf3074d3125e6ebb20d1 78 Gene3D G3DSA:3.30.300.130 1 78 3.8E-32 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily AP3564_03665 733a86da85c5a42419577b288ed02c2f 295 Pfam PF00483 Nucleotidyl transferase 2 238 1.2E-72 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AP3564_03665 733a86da85c5a42419577b288ed02c2f 295 Gene3D G3DSA:3.90.550.10 1 294 1.0E-88 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AP3564_03665 733a86da85c5a42419577b288ed02c2f 295 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 2 286 8.4E-158 T 13-10-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 AP3564_03665 733a86da85c5a42419577b288ed02c2f 295 SUPERFAMILY SSF53448 1 286 4.06E-94 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AP3564_05960 b7611fb9b13776e51ebecfec6b5bd509 256 Pfam PF01522 Polysaccharide deacetylase 52 175 7.9E-23 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 AP3564_05960 b7611fb9b13776e51ebecfec6b5bd509 256 SUPERFAMILY SSF88713 16 244 8.65E-54 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AP3564_05960 b7611fb9b13776e51ebecfec6b5bd509 256 Gene3D G3DSA:3.20.20.370 47 254 2.3E-57 T 13-10-2018 AP3564_05960 b7611fb9b13776e51ebecfec6b5bd509 256 TIGRFAM TIGR02764 spore_ybaN_pdaB: polysaccharide deacetylase family sporulation protein PdaB 54 243 3.4E-79 T 13-10-2018 IPR014132 Sporulation polysaccharide deacetylase, PdaB AP3564_13830 1fb9a792acd1b4916da700480c0b661c 510 SUPERFAMILY SSF51011 395 474 1.13E-9 T 13-10-2018 AP3564_13830 1fb9a792acd1b4916da700480c0b661c 510 SUPERFAMILY SSF51445 29 395 2.69E-114 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily AP3564_13830 1fb9a792acd1b4916da700480c0b661c 510 Gene3D G3DSA:3.20.20.80 25 390 1.2E-172 T 13-10-2018 AP3564_13830 1fb9a792acd1b4916da700480c0b661c 510 SMART SM00642 38 386 1.0E-108 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AP3564_13830 1fb9a792acd1b4916da700480c0b661c 510 Pfam PF00128 Alpha amylase, catalytic domain 66 361 3.5E-79 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AP3564_13830 1fb9a792acd1b4916da700480c0b661c 510 PIRSF PIRSF001024 2 480 6.4E-97 T 13-10-2018 IPR013777 Alpha-amylase-like GO:0004556|GO:0005509|GO:0005975 AP3564_13830 1fb9a792acd1b4916da700480c0b661c 510 Gene3D G3DSA:2.60.40.1180 391 486 3.0E-33 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta AP3564_01130 d777fdb2ae9f0b418f539a253ed3db83 271 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_01130 d777fdb2ae9f0b418f539a253ed3db83 271 Gene3D G3DSA:3.40.50.300 1 250 1.6E-67 T 13-10-2018 AP3564_01130 d777fdb2ae9f0b418f539a253ed3db83 271 SMART SM00382 26 215 9.9E-19 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_01130 d777fdb2ae9f0b418f539a253ed3db83 271 Pfam PF00005 ABC transporter 18 165 8.2E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_01130 d777fdb2ae9f0b418f539a253ed3db83 271 SUPERFAMILY SSF52540 2 228 5.54E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_00790 b1066a8dc9fbabad3608048d8927e446 416 SMART SM01209 101 293 7.1E-133 T 13-10-2018 AP3564_00790 b1066a8dc9fbabad3608048d8927e446 416 Gene3D G3DSA:3.90.600.10 325 416 2.7E-31 T 13-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AP3564_00790 b1066a8dc9fbabad3608048d8927e446 416 Gene3D G3DSA:3.40.50.20 2 93 3.6E-35 T 13-10-2018 AP3564_00790 b1066a8dc9fbabad3608048d8927e446 416 SUPERFAMILY SSF52440 1 101 1.41E-34 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AP3564_00790 b1066a8dc9fbabad3608048d8927e446 416 Gene3D G3DSA:3.30.1490.20 119 188 1.5E-26 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AP3564_00790 b1066a8dc9fbabad3608048d8927e446 416 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 327 414 2.7E-26 T 13-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AP3564_00790 b1066a8dc9fbabad3608048d8927e446 416 SUPERFAMILY SSF56059 102 321 3.18E-64 T 13-10-2018 AP3564_00790 b1066a8dc9fbabad3608048d8927e446 416 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 416 4.2E-172 T 13-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AP3564_00790 b1066a8dc9fbabad3608048d8927e446 416 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 100 9.2E-35 T 13-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AP3564_00790 b1066a8dc9fbabad3608048d8927e446 416 Gene3D G3DSA:3.30.470.20 189 324 1.4E-60 T 13-10-2018 AP3564_00790 b1066a8dc9fbabad3608048d8927e446 416 SUPERFAMILY SSF51246 324 416 1.18E-27 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AP3564_00790 b1066a8dc9fbabad3608048d8927e446 416 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 287 294 - T 13-10-2018 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AP3564_00790 b1066a8dc9fbabad3608048d8927e446 416 SMART SM01210 325 416 1.6E-41 T 13-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AP3564_00790 b1066a8dc9fbabad3608048d8927e446 416 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 101 293 6.4E-85 T 13-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AP3564_00790 b1066a8dc9fbabad3608048d8927e446 416 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 416 43.845 T 13-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AP3564_10910 3d1c9153900ba42b7e01cf5a2af5c515 158 Pfam PF09835 Uncharacterized protein conserved in bacteria (DUF2062) 6 145 2.2E-25 T 13-10-2018 IPR018639 Domain of unknown function DUF2062 AP3564_15755 1cc3d53355364ae8fe16b3c38b4b5b59 95 SUPERFAMILY SSF46689 2 93 8.24E-21 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_15755 1cc3d53355364ae8fe16b3c38b4b5b59 95 Gene3D G3DSA:1.10.10.60 6 93 1.8E-11 T 13-10-2018 AP3564_15755 1cc3d53355364ae8fe16b3c38b4b5b59 95 Pfam PF01527 Transposase 3 84 8.2E-17 T 13-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AP3564_12650 1cc3d53355364ae8fe16b3c38b4b5b59 95 SUPERFAMILY SSF46689 2 93 8.24E-21 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_12650 1cc3d53355364ae8fe16b3c38b4b5b59 95 Gene3D G3DSA:1.10.10.60 6 93 1.8E-11 T 13-10-2018 AP3564_12650 1cc3d53355364ae8fe16b3c38b4b5b59 95 Pfam PF01527 Transposase 3 84 8.2E-17 T 13-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AP3564_10165 e007da9221c77430bcc1609db56c0571 136 Pfam PF01152 Bacterial-like globin 9 122 4.2E-30 T 13-10-2018 IPR001486 Truncated hemoglobin GO:0019825 AP3564_10165 e007da9221c77430bcc1609db56c0571 136 Gene3D G3DSA:1.10.490.10 3 132 7.1E-52 T 13-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 AP3564_10165 e007da9221c77430bcc1609db56c0571 136 SUPERFAMILY SSF46458 7 123 7.77E-37 T 13-10-2018 IPR009050 Globin-like superfamily AP3564_00610 fe4468ff526e23028a00e10ada6c975b 128 Gene3D G3DSA:3.30.429.10 1 128 1.3E-49 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily AP3564_00610 fe4468ff526e23028a00e10ada6c975b 128 Pfam PF02962 5-carboxymethyl-2-hydroxymuconate isomerase 2 126 2.5E-44 T 13-10-2018 IPR004220 5-carboxymethyl-2-hydroxymuconate isomerase GO:0008704|GO:0019439 KEGG: 00350+5.3.3.10 AP3564_00610 fe4468ff526e23028a00e10ada6c975b 128 SUPERFAMILY SSF55331 2 127 3.38E-40 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily AP3564_09690 751dd2ee999e047e9e82752ccfeeadd8 104 Pfam PF00893 Small Multidrug Resistance protein 2 93 2.2E-25 T 13-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 AP3564_09690 751dd2ee999e047e9e82752ccfeeadd8 104 SUPERFAMILY SSF103481 4 102 8.11E-17 T 13-10-2018 AP3564_09690 751dd2ee999e047e9e82752ccfeeadd8 104 Gene3D G3DSA:1.10.3730.20 1 104 1.1E-26 T 13-10-2018 AP3564_01635 e8426b02c431c1d5462eaf89ec685f68 176 SUPERFAMILY SSF51182 10 174 6.11E-35 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily AP3564_01635 e8426b02c431c1d5462eaf89ec685f68 176 Pfam PF03079 ARD/ARD' family 10 168 1.6E-44 T 13-10-2018 IPR004313 Acireductone dioxygenase ARD family GO:0010309|GO:0055114 KEGG: 00270+1.13.11.54|MetaCyc: PWY-4361|Reactome: R-HSA-1237112 AP3564_01635 e8426b02c431c1d5462eaf89ec685f68 176 Hamap MF_01682 Acireductone dioxygenase [mtnD]. 1 175 30.249 T 13-10-2018 IPR023956 Acireductone dioxygenase ARD, bacteria GO:0005506|GO:0010308|GO:0010309|GO:0016151|GO:0019284|GO:0055114 KEGG: 00270+1.13.11.54+1.13.11.53|MetaCyc: PWY-4361|MetaCyc: PWY-5389 AP3564_01635 e8426b02c431c1d5462eaf89ec685f68 176 Gene3D G3DSA:2.60.120.10 1 170 2.2E-59 T 13-10-2018 IPR014710 RmlC-like jelly roll fold AP3564_14055 f5590328f8f04800da43a6d8838b22f3 68 Gene3D G3DSA:3.30.70.100 1 68 3.9E-26 T 13-10-2018 AP3564_14055 f5590328f8f04800da43a6d8838b22f3 68 ProSitePatterns PS01047 Heavy-metal-associated domain. 8 37 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AP3564_14055 f5590328f8f04800da43a6d8838b22f3 68 Pfam PF00403 Heavy-metal-associated domain 5 66 2.9E-19 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AP3564_14055 f5590328f8f04800da43a6d8838b22f3 68 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 4 67 1.5E-21 T 13-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 AP3564_14055 f5590328f8f04800da43a6d8838b22f3 68 SUPERFAMILY SSF55008 1 67 8.77E-23 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 AP3564_14055 f5590328f8f04800da43a6d8838b22f3 68 PRINTS PR00946 Mercury scavenger protein signature 42 56 7.1E-8 T 13-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 AP3564_14055 f5590328f8f04800da43a6d8838b22f3 68 PRINTS PR00946 Mercury scavenger protein signature 11 27 7.1E-8 T 13-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 AP3564_14055 f5590328f8f04800da43a6d8838b22f3 68 PRINTS PR00946 Mercury scavenger protein signature 27 42 7.1E-8 T 13-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 AP3564_14055 f5590328f8f04800da43a6d8838b22f3 68 PRINTS PR00946 Mercury scavenger protein signature 56 68 7.1E-8 T 13-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 AP3564_12925 609b57f639e2ca834ed362c0168f01e5 75 Hamap MF_01538 UPF0346 protein . 1 70 23.373 T 13-10-2018 IPR010673 Protein of unknown function UPF0346 AP3564_12925 609b57f639e2ca834ed362c0168f01e5 75 Gene3D G3DSA:1.10.150.260 1 70 9.4E-30 T 13-10-2018 IPR036806 YozE SAM-like superfamily AP3564_12925 609b57f639e2ca834ed362c0168f01e5 75 PIRSF PIRSF037262 1 74 2.6E-35 T 13-10-2018 IPR010673 Protein of unknown function UPF0346 AP3564_12925 609b57f639e2ca834ed362c0168f01e5 75 SUPERFAMILY SSF140652 2 70 3.66E-31 T 13-10-2018 IPR036806 YozE SAM-like superfamily AP3564_12925 609b57f639e2ca834ed362c0168f01e5 75 Pfam PF06855 YozE SAM-like fold 3 68 1.7E-29 T 13-10-2018 IPR023089 YozE SAM-like domain AP3564_14125 ac58c0c3905d9285268ba3ae65da3677 153 Pfam PF04463 Protein of unknown function (DUF523) 2 146 7.4E-42 T 13-10-2018 IPR007553 Domain of unknown function DUF523 AP3564_01030 fee76b834084b9a9579b51f885f1f7aa 440 Pfam PF02667 Short chain fatty acid transporter 2 440 1.4E-158 T 13-10-2018 IPR006160 Short chain fatty acid transporter AtoE AP3564_03970 d4afbca973f83173762a83c6ea8d326f 181 Hamap MF_01521 Probable manganese efflux pump MntP [mntP]. 4 181 21.599 T 13-10-2018 IPR022929 Putative manganese efflux pump MntP AP3564_03970 d4afbca973f83173762a83c6ea8d326f 181 Pfam PF02659 Putative manganese efflux pump 31 178 4.4E-42 T 13-10-2018 IPR003810 Putative manganese efflux pump AP3564_11395 48cf0498f6d64fa1aba232f300f1c7d0 463 Gene3D G3DSA:3.90.640.20 158 246 1.4E-5 T 13-10-2018 IPR037126 PdaC/RsiV-like superfamily AP3564_11395 48cf0498f6d64fa1aba232f300f1c7d0 463 Pfam PF01522 Polysaccharide deacetylase 278 391 3.4E-32 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 AP3564_11395 48cf0498f6d64fa1aba232f300f1c7d0 463 Gene3D G3DSA:3.20.20.370 247 463 1.2E-73 T 13-10-2018 AP3564_11395 48cf0498f6d64fa1aba232f300f1c7d0 463 SUPERFAMILY SSF88713 279 460 5.68E-63 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AP3564_05200 3d5b8da59183c6adc860ad44792c6115 409 Pfam PF01548 Transposase 5 164 4.9E-31 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_05200 3d5b8da59183c6adc860ad44792c6115 409 Pfam PF02371 Transposase IS116/IS110/IS902 family 280 365 1.3E-27 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_05435 3d5b8da59183c6adc860ad44792c6115 409 Pfam PF01548 Transposase 5 164 4.9E-31 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_05435 3d5b8da59183c6adc860ad44792c6115 409 Pfam PF02371 Transposase IS116/IS110/IS902 family 280 365 1.3E-27 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_15355 86dd8974771bdc978d6fac8f34528a4c 226 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 8 211 2.6E-60 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT AP3564_16765 45ef744413b3676850a066005fa42790 408 Gene3D G3DSA:3.40.50.620 1 243 8.3E-42 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AP3564_16765 45ef744413b3676850a066005fa42790 408 SUPERFAMILY SSF52374 10 238 4.07E-20 T 13-10-2018 AP3564_16765 45ef744413b3676850a066005fa42790 408 Pfam PF05636 HIGH Nucleotidyl Transferase 2 387 1.9E-144 T 13-10-2018 IPR008513 Uncharacterised protein family UPF0348 AP3564_16765 45ef744413b3676850a066005fa42790 408 Hamap MF_01539 UPF0348 protein . 2 404 41.981 T 13-10-2018 IPR008513 Uncharacterised protein family UPF0348 AP3564_09120 5e416c2d180c9d028b61c3f4758c8404 205 Pfam PF06725 3D domain 117 178 1.1E-18 T 13-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 AP3564_09120 5e416c2d180c9d028b61c3f4758c8404 205 SUPERFAMILY SSF50685 116 158 2.34E-6 T 13-10-2018 IPR036908 RlpA-like domain superfamily AP3564_12540 9cf456d37cf72c54bcc5f70f2492e7ad 299 SUPERFAMILY SSF53850 92 294 3.37E-41 T 13-10-2018 AP3564_12540 9cf456d37cf72c54bcc5f70f2492e7ad 299 Pfam PF03466 LysR substrate binding domain 92 291 3.0E-43 T 13-10-2018 IPR005119 LysR, substrate-binding AP3564_12540 9cf456d37cf72c54bcc5f70f2492e7ad 299 Gene3D G3DSA:1.10.10.10 1 89 2.8E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_12540 9cf456d37cf72c54bcc5f70f2492e7ad 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.0E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_12540 9cf456d37cf72c54bcc5f70f2492e7ad 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.0E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_12540 9cf456d37cf72c54bcc5f70f2492e7ad 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.0E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_12540 9cf456d37cf72c54bcc5f70f2492e7ad 299 SUPERFAMILY SSF46785 2 111 3.6E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_12540 9cf456d37cf72c54bcc5f70f2492e7ad 299 Gene3D G3DSA:3.40.190.290 92 299 6.7E-44 T 13-10-2018 AP3564_12540 9cf456d37cf72c54bcc5f70f2492e7ad 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 3.7E-20 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_01165 e4365be6b51a5d582fd2b51fa9453456 193 Pfam PF08361 MAATS-type transcriptional repressor, C-terminal region 107 171 5.9E-5 T 13-10-2018 IPR013572 Transcription regulator MAATS, C-terminal GO:0003677 AP3564_01165 e4365be6b51a5d582fd2b51fa9453456 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 1 46 4.4E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_01165 e4365be6b51a5d582fd2b51fa9453456 193 SUPERFAMILY SSF46689 1 58 8.21E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_01165 e4365be6b51a5d582fd2b51fa9453456 193 Gene3D G3DSA:1.10.357.10 1 185 4.4E-34 T 13-10-2018 AP3564_01165 e4365be6b51a5d582fd2b51fa9453456 193 SUPERFAMILY SSF48498 79 164 8.6E-11 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AP3564_16975 ed0c5715f9deba7c164d52c713917e61 230 Gene3D G3DSA:1.10.10.630 119 196 4.1E-34 T 13-10-2018 IPR034829 DnaD-like domain superfamily AP3564_16975 ed0c5715f9deba7c164d52c713917e61 230 SUPERFAMILY SSF46785 29 84 1.84E-6 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_16975 ed0c5715f9deba7c164d52c713917e61 230 SUPERFAMILY SSF158499 125 190 2.35E-21 T 13-10-2018 IPR034829 DnaD-like domain superfamily AP3564_16975 ed0c5715f9deba7c164d52c713917e61 230 Pfam PF07261 Replication initiation and membrane attachment 125 197 2.4E-28 T 13-10-2018 IPR006343 DnaD domain AP3564_16975 ed0c5715f9deba7c164d52c713917e61 230 Gene3D G3DSA:1.10.10.10 1 114 3.3E-38 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_16975 ed0c5715f9deba7c164d52c713917e61 230 TIGRFAM TIGR01446 DnaD_dom: DnaD domain protein 124 195 1.8E-26 T 13-10-2018 IPR006343 DnaD domain AP3564_05750 4afb5b0ef0da17702da251d362577340 113 SUPERFAMILY SSF54843 1 112 4.06E-45 T 13-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 AP3564_05750 4afb5b0ef0da17702da251d362577340 113 Pfam PF00237 Ribosomal protein L22p/L17e 5 107 1.7E-38 T 13-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 AP3564_05750 4afb5b0ef0da17702da251d362577340 113 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 7.3E-53 T 13-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05750 4afb5b0ef0da17702da251d362577340 113 Gene3D G3DSA:3.90.470.10 1 113 5.6E-52 T 13-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 AP3564_05750 4afb5b0ef0da17702da251d362577340 113 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 110 31.056 T 13-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_05750 4afb5b0ef0da17702da251d362577340 113 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 13-10-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_14275 edc4f187d0085fcef846af9eca198eae 515 Pfam PF01039 Carboxyl transferase domain 32 512 5.3E-162 T 13-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 AP3564_14275 edc4f187d0085fcef846af9eca198eae 515 SUPERFAMILY SSF52096 4 255 1.22E-69 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AP3564_14275 edc4f187d0085fcef846af9eca198eae 515 SUPERFAMILY SSF52096 217 495 1.08E-80 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AP3564_14275 edc4f187d0085fcef846af9eca198eae 515 Gene3D G3DSA:3.90.226.10 255 514 5.0E-82 T 13-10-2018 AP3564_14275 edc4f187d0085fcef846af9eca198eae 515 Gene3D G3DSA:3.90.226.10 2 250 3.6E-79 T 13-10-2018 AP3564_14570 2d074d4a262a0a2b9c71f00e76911f11 267 TIGRFAM TIGR00245 TIGR00245: TIGR00245 family protein 10 257 3.2E-54 T 13-10-2018 IPR005226 UPF0014 family AP3564_14570 2d074d4a262a0a2b9c71f00e76911f11 267 Pfam PF03649 Uncharacterised protein family (UPF0014) 11 252 1.4E-83 T 13-10-2018 IPR005226 UPF0014 family AP3564_15135 e09de16513b9a5d3e1d24cf4ce87b66a 207 Pfam PF13542 Helix-turn-helix domain of transposase family ISL3 89 138 1.3E-10 T 13-10-2018 IPR032877 Transposase IS204/IS1001/IS1096/IS1165, helix-turn-helix domain AP3564_15135 e09de16513b9a5d3e1d24cf4ce87b66a 207 Pfam PF01610 Transposase 150 205 2.2E-6 T 13-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain AP3564_06745 bf692a75885d050a193309723d111f29 264 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 120 231 1.3E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AP3564_06745 bf692a75885d050a193309723d111f29 264 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 105 223 3.4E-16 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AP3564_06745 bf692a75885d050a193309723d111f29 264 Gene3D G3DSA:1.20.120.710 14 130 4.1E-52 T 13-10-2018 AP3564_06745 bf692a75885d050a193309723d111f29 264 SUPERFAMILY SSF56784 1 260 6.62E-41 T 13-10-2018 IPR036412 HAD-like superfamily AP3564_06745 bf692a75885d050a193309723d111f29 264 Gene3D G3DSA:3.40.50.1000 2 254 4.1E-52 T 13-10-2018 IPR023214 HAD superfamily AP3564_06745 bf692a75885d050a193309723d111f29 264 Pfam PF13419 Haloacid dehalogenase-like hydrolase 4 231 5.3E-27 T 13-10-2018 AP3564_17465 ee168dfeceedf369ef5bdac43715c16c 214 SUPERFAMILY SSF63380 1 91 2.13E-28 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AP3564_17465 ee168dfeceedf369ef5bdac43715c16c 214 Gene3D G3DSA:2.40.30.20 101 200 6.5E-34 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AP3564_17465 ee168dfeceedf369ef5bdac43715c16c 214 PIRSF PIRSF000498 1 206 1.7E-78 T 13-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AP3564_17465 ee168dfeceedf369ef5bdac43715c16c 214 Gene3D G3DSA:2.40.30.20 1 88 3.3E-33 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AP3564_17465 ee168dfeceedf369ef5bdac43715c16c 214 Pfam PF00677 Lumazine binding domain 99 183 7.2E-24 T 13-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AP3564_17465 ee168dfeceedf369ef5bdac43715c16c 214 Pfam PF00677 Lumazine binding domain 3 86 8.4E-26 T 13-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AP3564_17465 ee168dfeceedf369ef5bdac43715c16c 214 SUPERFAMILY SSF63380 92 194 1.45E-32 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AP3564_17465 ee168dfeceedf369ef5bdac43715c16c 214 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 196 3.4E-78 T 13-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AP3564_13600 c1255af6da21b48d39410e5db4042f02 481 PRINTS PR01036 Tetracycline resistance protein TetB signature 141 165 9.4E-8 T 13-10-2018 AP3564_13600 c1255af6da21b48d39410e5db4042f02 481 PRINTS PR01036 Tetracycline resistance protein TetB signature 305 329 9.4E-8 T 13-10-2018 AP3564_13600 c1255af6da21b48d39410e5db4042f02 481 PRINTS PR01036 Tetracycline resistance protein TetB signature 111 131 9.4E-8 T 13-10-2018 AP3564_13600 c1255af6da21b48d39410e5db4042f02 481 PRINTS PR01036 Tetracycline resistance protein TetB signature 20 44 9.4E-8 T 13-10-2018 AP3564_13600 c1255af6da21b48d39410e5db4042f02 481 SUPERFAMILY SSF103473 10 466 1.83E-66 T 13-10-2018 IPR036259 MFS transporter superfamily AP3564_13600 c1255af6da21b48d39410e5db4042f02 481 Gene3D G3DSA:1.20.1250.20 263 473 1.1E-23 T 13-10-2018 AP3564_13600 c1255af6da21b48d39410e5db4042f02 481 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 17 423 2.2E-118 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 AP3564_13600 c1255af6da21b48d39410e5db4042f02 481 Pfam PF07690 Major Facilitator Superfamily 22 412 1.8E-46 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AP3564_13600 c1255af6da21b48d39410e5db4042f02 481 Gene3D G3DSA:1.20.1720.10 17 255 1.1E-39 T 13-10-2018 AP3564_00115 2d2f7a7982c6939b0ee74351fa3ba1bc 453 SUPERFAMILY SSF53098 58 410 1.44E-46 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_00115 2d2f7a7982c6939b0ee74351fa3ba1bc 453 Pfam PF13546 DDE superfamily endonuclease 73 269 2.3E-20 T 13-10-2018 IPR038721 Transposase IS701-like, DDE domain AP3564_03405 2d2f7a7982c6939b0ee74351fa3ba1bc 453 SUPERFAMILY SSF53098 58 410 1.44E-46 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_03405 2d2f7a7982c6939b0ee74351fa3ba1bc 453 Pfam PF13546 DDE superfamily endonuclease 73 269 2.3E-20 T 13-10-2018 IPR038721 Transposase IS701-like, DDE domain AP3564_19510 c69b7b2b4d588535588016d6c8f20014 72 Gene3D G3DSA:1.10.8.910 10 70 3.3E-30 T 13-10-2018 IPR038300 SASP, alpha/beta-type superfamily AP3564_19510 c69b7b2b4d588535588016d6c8f20014 72 ProSitePatterns PS00304 Small, acid-soluble spore proteins, alpha/beta type, signature 1. 25 34 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 AP3564_19510 c69b7b2b4d588535588016d6c8f20014 72 Pfam PF00269 Small, acid-soluble spore proteins, alpha/beta type 10 64 6.8E-22 T 13-10-2018 IPR001448 Small acid-soluble spore protein, alpha/beta-type GO:0003690|GO:0006265 AP3564_19510 c69b7b2b4d588535588016d6c8f20014 72 ProSitePatterns PS00684 Small, acid-soluble spore proteins, alpha/beta type, signature 2. 43 57 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 AP3564_00745 2171d25a415defca1de5f98b0987476b 84 Gene3D G3DSA:3.30.1280.10 1 84 1.8E-37 T 13-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AP3564_00745 2171d25a415defca1de5f98b0987476b 84 SUPERFAMILY SSF82697 1 80 2.44E-30 T 13-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AP3564_00745 2171d25a415defca1de5f98b0987476b 84 ProDom PD010362 PHOSPHORIBOSYLFORMYLGLYCINAMIDINE PURS SYNTHETASE SYNTHASE COMPONENT SYNTHASE LIGASE FGAM UPF0062 I 9 80 6.0E-26 T 13-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 AP3564_00745 2171d25a415defca1de5f98b0987476b 84 TIGRFAM TIGR00302 TIGR00302: phosphoribosylformylglycinamidine synthase, purS protein 2 80 5.3E-35 T 13-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 AP3564_00745 2171d25a415defca1de5f98b0987476b 84 Hamap MF_01926 Phosphoribosylformylglycinamidine synthase subunit PurS [purS]. 2 78 22.617 T 13-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 AP3564_00745 2171d25a415defca1de5f98b0987476b 84 Pfam PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase 4 78 2.6E-33 T 13-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 AP3564_17005 286cae2ded98a2295973a3220fc714f0 127 PIRSF PIRSF006246 1 127 5.3E-55 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AP3564_17005 286cae2ded98a2295973a3220fc714f0 127 Pfam PF02261 Aspartate decarboxylase 1 114 4.9E-53 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AP3564_17005 286cae2ded98a2295973a3220fc714f0 127 Gene3D G3DSA:2.40.40.20 1 126 4.1E-54 T 13-10-2018 AP3564_17005 286cae2ded98a2295973a3220fc714f0 127 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 97 4.0E-39 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AP3564_17005 286cae2ded98a2295973a3220fc714f0 127 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 127 72.457 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AP3564_17005 286cae2ded98a2295973a3220fc714f0 127 SUPERFAMILY SSF50692 1 121 4.16E-51 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily AP3564_17005 286cae2ded98a2295973a3220fc714f0 127 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 1 126 4.9E-60 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AP3564_01150 6b582a68ef0425d67f9f6fed6b06d6c9 213 Gene3D G3DSA:1.10.3720.10 1 212 1.1E-59 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_01150 6b582a68ef0425d67f9f6fed6b06d6c9 213 SUPERFAMILY SSF161098 9 196 1.57E-49 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_01150 6b582a68ef0425d67f9f6fed6b06d6c9 213 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 29 211 1.2E-25 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AP3564_01150 6b582a68ef0425d67f9f6fed6b06d6c9 213 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 7 105 6.3E-32 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AP3564_00205 bd3832a46888917034d7ff8bb5f338c7 482 Gene3D G3DSA:1.10.10.10 11 80 2.1E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_00205 bd3832a46888917034d7ff8bb5f338c7 482 SUPERFAMILY SSF46785 6 78 1.48E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_00205 bd3832a46888917034d7ff8bb5f338c7 482 Gene3D G3DSA:3.40.640.10 152 371 6.3E-102 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_00205 bd3832a46888917034d7ff8bb5f338c7 482 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 76 2.2E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_00205 bd3832a46888917034d7ff8bb5f338c7 482 Pfam PF00155 Aminotransferase class I and II 119 468 9.5E-36 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AP3564_00205 bd3832a46888917034d7ff8bb5f338c7 482 Gene3D G3DSA:3.90.1150.10 116 473 6.3E-102 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_00205 bd3832a46888917034d7ff8bb5f338c7 482 SMART SM00345 17 76 6.5E-12 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_00205 bd3832a46888917034d7ff8bb5f338c7 482 SUPERFAMILY SSF53383 93 477 3.44E-92 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_11775 904c1b540ebd4d5bb323f82af8339171 441 Pfam PF01943 Polysaccharide biosynthesis protein 5 295 6.2E-22 T 13-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 AP3564_11775 904c1b540ebd4d5bb323f82af8339171 441 PIRSF PIRSF038958 1 440 1.3E-69 T 13-10-2018 IPR024923 Peptidoglycan biosynthesis protein, SpoVB-type AP3564_02780 569a0065ab032706e6b166a733684271 370 SUPERFAMILY SSF56796 5 361 4.84E-92 T 13-10-2018 AP3564_02780 569a0065ab032706e6b166a733684271 370 Gene3D G3DSA:3.40.50.1970 4 161 5.2E-42 T 13-10-2018 AP3564_02780 569a0065ab032706e6b166a733684271 370 Pfam PF00465 Iron-containing alcohol dehydrogenase 10 350 4.5E-62 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 AP3564_02780 569a0065ab032706e6b166a733684271 370 Gene3D G3DSA:1.20.1090.10 162 370 1.4E-79 T 13-10-2018 AP3564_02780 569a0065ab032706e6b166a733684271 370 PIRSF PIRSF000112 1 364 1.0E-120 T 13-10-2018 IPR016205 Glycerol dehydrogenase GO:0016614|GO:0046872|GO:0055114 KEGG: 00564+1.1.1.261|MetaCyc: PWY-6349 AP3564_02780 569a0065ab032706e6b166a733684271 370 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 152 180 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AP3564_02780 569a0065ab032706e6b166a733684271 370 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 243 263 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AP3564_17280 52260b0be2e723438846a77437561e32 194 SUPERFAMILY SSF69593 5 192 1.7E-51 T 13-10-2018 AP3564_17280 52260b0be2e723438846a77437561e32 194 Pfam PF01553 Acyltransferase 21 145 1.8E-23 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AP3564_17280 52260b0be2e723438846a77437561e32 194 SMART SM00563 36 148 3.5E-38 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AP3564_18325 88f30239651c8bef102b9eca0c044748 269 Hamap MF_00921 Putative pyruvate, phosphate dikinase regulatory protein. 4 268 59.656 T 13-10-2018 IPR026565 Putative pyruvate, phosphate dikinase regulatory protein AP3564_18325 88f30239651c8bef102b9eca0c044748 269 Pfam PF03618 Kinase/pyrophosphorylase 6 262 4.7E-97 T 13-10-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 AP3564_00385 a4114757bc96aa8b6b533cdc0b85107a 289 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_00385 a4114757bc96aa8b6b533cdc0b85107a 289 Gene3D G3DSA:3.40.50.300 1 229 2.6E-57 T 13-10-2018 AP3564_00385 a4114757bc96aa8b6b533cdc0b85107a 289 SMART SM00382 25 215 2.7E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_00385 a4114757bc96aa8b6b533cdc0b85107a 289 SUPERFAMILY SSF52540 2 218 1.74E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_00385 a4114757bc96aa8b6b533cdc0b85107a 289 Pfam PF00005 ABC transporter 17 160 4.8E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_02960 ae5d297d04bafc4260c55fdda168e655 234 SUPERFAMILY SSF52540 2 232 1.2E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_02960 ae5d297d04bafc4260c55fdda168e655 234 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_02960 ae5d297d04bafc4260c55fdda168e655 234 Pfam PF00005 ABC transporter 17 162 1.8E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_02960 ae5d297d04bafc4260c55fdda168e655 234 Gene3D G3DSA:3.40.50.300 1 234 4.2E-65 T 13-10-2018 AP3564_02960 ae5d297d04bafc4260c55fdda168e655 234 SMART SM00382 26 211 7.6E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_05310 2064b1f301642b69fcd3b939ac24ca61 195 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 2.5E-5 T 13-10-2018 AP3564_05310 2064b1f301642b69fcd3b939ac24ca61 195 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 2.5E-5 T 13-10-2018 AP3564_05310 2064b1f301642b69fcd3b939ac24ca61 195 Pfam PF00117 Glutamine amidotransferase class-I 4 185 6.0E-58 T 13-10-2018 IPR017926 Glutamine amidotransferase AP3564_05310 2064b1f301642b69fcd3b939ac24ca61 195 PRINTS PR00097 Anthranilate synthase component II signature 2 16 1.5E-36 T 13-10-2018 AP3564_05310 2064b1f301642b69fcd3b939ac24ca61 195 PRINTS PR00097 Anthranilate synthase component II signature 47 56 1.5E-36 T 13-10-2018 AP3564_05310 2064b1f301642b69fcd3b939ac24ca61 195 PRINTS PR00097 Anthranilate synthase component II signature 119 131 1.5E-36 T 13-10-2018 AP3564_05310 2064b1f301642b69fcd3b939ac24ca61 195 PRINTS PR00097 Anthranilate synthase component II signature 99 107 1.5E-36 T 13-10-2018 AP3564_05310 2064b1f301642b69fcd3b939ac24ca61 195 PRINTS PR00097 Anthranilate synthase component II signature 74 85 1.5E-36 T 13-10-2018 AP3564_05310 2064b1f301642b69fcd3b939ac24ca61 195 PRINTS PR00097 Anthranilate synthase component II signature 164 177 1.5E-36 T 13-10-2018 AP3564_05310 2064b1f301642b69fcd3b939ac24ca61 195 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 9.7E-14 T 13-10-2018 AP3564_05310 2064b1f301642b69fcd3b939ac24ca61 195 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 9.7E-14 T 13-10-2018 AP3564_05310 2064b1f301642b69fcd3b939ac24ca61 195 PRINTS PR00096 Glutamine amidotransferase superfamily signature 164 177 9.7E-14 T 13-10-2018 AP3564_05310 2064b1f301642b69fcd3b939ac24ca61 195 Gene3D G3DSA:3.40.50.880 1 189 5.1E-64 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AP3564_05310 2064b1f301642b69fcd3b939ac24ca61 195 SUPERFAMILY SSF52317 1 189 3.3E-59 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AP3564_05310 2064b1f301642b69fcd3b939ac24ca61 195 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 186 2.3E-89 T 13-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AP3564_05320 d7c4d4ce44b9855cc4564bcee26bf8bc 282 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 59 72 - T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AP3564_05320 d7c4d4ce44b9855cc4564bcee26bf8bc 282 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 25 40 - T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AP3564_05320 d7c4d4ce44b9855cc4564bcee26bf8bc 282 Pfam PF00809 Pterin binding enzyme 26 259 3.9E-92 T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AP3564_05320 d7c4d4ce44b9855cc4564bcee26bf8bc 282 Gene3D G3DSA:3.20.20.20 5 279 4.1E-119 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AP3564_05320 d7c4d4ce44b9855cc4564bcee26bf8bc 282 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 24 274 3.9E-105 T 13-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 AP3564_05320 d7c4d4ce44b9855cc4564bcee26bf8bc 282 SUPERFAMILY SSF51717 11 276 9.42E-106 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AP3564_10205 cc234b752353b9a7a6a3e746bb6365cd 617 Pfam PF00999 Sodium/hydrogen exchanger family 10 390 2.1E-75 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AP3564_10205 cc234b752353b9a7a6a3e746bb6365cd 617 SUPERFAMILY SSF51735 404 517 4.57E-13 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_10205 cc234b752353b9a7a6a3e746bb6365cd 617 Pfam PF02254 TrkA-N domain 405 516 2.9E-11 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 AP3564_10205 cc234b752353b9a7a6a3e746bb6365cd 617 SUPERFAMILY SSF116726 547 612 9.42E-10 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 AP3564_10205 cc234b752353b9a7a6a3e746bb6365cd 617 Gene3D G3DSA:3.30.70.1450 536 616 1.8E-20 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 AP3564_10205 cc234b752353b9a7a6a3e746bb6365cd 617 Pfam PF02080 TrkA-C domain 554 613 3.2E-11 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AP3564_10205 cc234b752353b9a7a6a3e746bb6365cd 617 Gene3D G3DSA:3.40.50.720 400 535 8.9E-15 T 13-10-2018 AP3564_10205 cc234b752353b9a7a6a3e746bb6365cd 617 Gene3D G3DSA:1.20.1530.20 2 399 4.6E-71 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily AP3564_15315 4aa26dd4a98d2fe4ce17031bd094548f 211 SUPERFAMILY SSF53697 20 209 7.23E-30 T 13-10-2018 AP3564_15315 4aa26dd4a98d2fe4ce17031bd094548f 211 Gene3D G3DSA:3.40.50.10490 40 199 7.8E-58 T 13-10-2018 AP3564_15380 34d275a2737bdf6f64032d9111c62df7 178 Pfam PF02229 Transcriptional Coactivator p15 (PC4) 20 64 2.3E-7 T 13-10-2018 IPR003173 Transcriptional coactivator p15 (PC4) GO:0003677|GO:0006355 AP3564_15380 34d275a2737bdf6f64032d9111c62df7 178 Gene3D G3DSA:2.30.31.70 1 80 5.3E-32 T 13-10-2018 AP3564_14000 b453a78cda76d917159dfba959161d98 378 SMART SM00450 7 110 5.3E-15 T 13-10-2018 IPR001763 Rhodanese-like domain AP3564_14000 b453a78cda76d917159dfba959161d98 378 SUPERFAMILY SSF52821 2 107 7.0E-20 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily AP3564_14000 b453a78cda76d917159dfba959161d98 378 SMART SM00849 130 292 3.0E-29 T 13-10-2018 IPR001279 Metallo-beta-lactamase AP3564_14000 b453a78cda76d917159dfba959161d98 378 Gene3D G3DSA:3.60.15.10 116 359 9.8E-56 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AP3564_14000 b453a78cda76d917159dfba959161d98 378 Pfam PF00753 Metallo-beta-lactamase superfamily 130 292 1.0E-14 T 13-10-2018 IPR001279 Metallo-beta-lactamase AP3564_14000 b453a78cda76d917159dfba959161d98 378 SUPERFAMILY SSF56281 119 322 5.96E-44 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AP3564_14000 b453a78cda76d917159dfba959161d98 378 Gene3D G3DSA:3.40.250.10 2 114 1.9E-19 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily AP3564_14000 b453a78cda76d917159dfba959161d98 378 Pfam PF00581 Rhodanese-like domain 14 106 3.4E-9 T 13-10-2018 IPR001763 Rhodanese-like domain AP3564_15180 64b4ddabe099d584bfc6c73890dda2c6 346 Gene3D G3DSA:1.25.10.10 179 345 1.8E-12 T 13-10-2018 IPR011989 Armadillo-like helical AP3564_15180 64b4ddabe099d584bfc6c73890dda2c6 346 SUPERFAMILY SSF48371 198 328 1.19E-12 T 13-10-2018 IPR016024 Armadillo-type fold AP3564_04810 5e0edc93465a3d52d537142a5ac4dfd1 253 Pfam PF13614 AAA domain 2 178 1.4E-74 T 13-10-2018 IPR025669 AAA domain AP3564_04810 5e0edc93465a3d52d537142a5ac4dfd1 253 Gene3D G3DSA:3.40.50.300 1 252 2.7E-84 T 13-10-2018 AP3564_04810 5e0edc93465a3d52d537142a5ac4dfd1 253 PRINTS PR00091 Nitrogenase component II signature 31 46 8.7E-5 T 13-10-2018 AP3564_04810 5e0edc93465a3d52d537142a5ac4dfd1 253 PRINTS PR00091 Nitrogenase component II signature 9 22 8.7E-5 T 13-10-2018 AP3564_04810 5e0edc93465a3d52d537142a5ac4dfd1 253 PIRSF PIRSF009320 88 252 3.4E-7 T 13-10-2018 AP3564_04810 5e0edc93465a3d52d537142a5ac4dfd1 253 PIRSF PIRSF009320 2 85 9.7E-16 T 13-10-2018 AP3564_04810 5e0edc93465a3d52d537142a5ac4dfd1 253 SUPERFAMILY SSF52540 2 251 4.04E-71 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_19495 9c1826c9ec407b26955e8e8e8956e590 161 Pfam PF06271 RDD family 26 149 9.8E-22 T 13-10-2018 IPR010432 RDD AP3564_04355 1a0e19c83bdc6ba5c92ff473bc08b2ca 290 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 275 8.3E-36 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AP3564_09520 5d602830da4810bcd1a8707c87bf9c04 157 SUPERFAMILY SSF55811 27 112 2.03E-20 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AP3564_09520 5d602830da4810bcd1a8707c87bf9c04 157 Gene3D G3DSA:3.90.79.10 1 155 1.4E-44 T 13-10-2018 AP3564_09520 5d602830da4810bcd1a8707c87bf9c04 157 Pfam PF00293 NUDIX domain 28 87 2.8E-12 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AP3564_09520 5d602830da4810bcd1a8707c87bf9c04 157 PRINTS PR00502 NUDIX hydrolase family signature 62 77 7.8E-6 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AP3564_09520 5d602830da4810bcd1a8707c87bf9c04 157 PRINTS PR00502 NUDIX hydrolase family signature 48 62 7.8E-6 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AP3564_09520 5d602830da4810bcd1a8707c87bf9c04 157 ProSitePatterns PS00893 Nudix box signature. 53 74 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AP3564_09520 5d602830da4810bcd1a8707c87bf9c04 157 TIGRFAM TIGR02705 nudix_YtkD: nucleoside triphosphatase YtkD 3 152 5.9E-65 T 13-10-2018 IPR014078 Nucleoside triphosphatase YtkD MetaCyc: PWY-6502 AP3564_05070 1a5c7869d751858a151696de446967a3 275 Pfam PF04468 PSP1 C-terminal conserved region 61 146 1.5E-31 T 13-10-2018 IPR007557 PSP1, C-terminal AP3564_06520 9c67b3a43f23f30176e3092441343878 158 SMART SM00903 10 156 2.0E-35 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 AP3564_06520 9c67b3a43f23f30176e3092441343878 158 Gene3D G3DSA:2.30.110.10 6 155 1.2E-36 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AP3564_06520 9c67b3a43f23f30176e3092441343878 158 SUPERFAMILY SSF50475 1 156 9.81E-41 T 13-10-2018 AP3564_06520 9c67b3a43f23f30176e3092441343878 158 Pfam PF01613 Flavin reductase like domain 11 151 1.1E-24 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 AP3564_11345 3cb59a8340e0a1f20d878fc5c6274c6b 270 Gene3D G3DSA:3.40.50.1820 2 267 1.9E-47 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold AP3564_11345 3cb59a8340e0a1f20d878fc5c6274c6b 270 Pfam PF12146 Serine aminopeptidase, S33 31 140 1.5E-12 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 AP3564_11345 3cb59a8340e0a1f20d878fc5c6274c6b 270 SUPERFAMILY SSF53474 6 260 9.17E-46 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold AP3564_12085 084f01ca771a1b8d758bc58e70a08bdc 149 Pfam PF02814 UreE urease accessory protein, N-terminal domain 15 69 1.3E-19 T 13-10-2018 IPR004029 UreE urease accessory, N-terminal AP3564_12085 084f01ca771a1b8d758bc58e70a08bdc 149 SMART SM00988 6 69 2.7E-16 T 13-10-2018 IPR004029 UreE urease accessory, N-terminal AP3564_12085 084f01ca771a1b8d758bc58e70a08bdc 149 Gene3D G3DSA:2.60.260.20 1 72 1.2E-23 T 13-10-2018 AP3564_12085 084f01ca771a1b8d758bc58e70a08bdc 149 Gene3D G3DSA:3.30.70.790 75 147 4.8E-30 T 13-10-2018 IPR036675 UreE, C-terminal domain superfamily GO:0016151|GO:0019627|GO:0065003 AP3564_12085 084f01ca771a1b8d758bc58e70a08bdc 149 Hamap MF_00822 Urease accessory protein UreE [ureE]. 1 147 22.742 T 13-10-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 AP3564_12085 084f01ca771a1b8d758bc58e70a08bdc 149 Pfam PF05194 UreE urease accessory protein, C-terminal domain 76 142 6.0E-10 T 13-10-2018 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0016151|GO:0019627|GO:0065003 AP3564_12085 084f01ca771a1b8d758bc58e70a08bdc 149 SUPERFAMILY SSF69287 1 73 5.36E-20 T 13-10-2018 IPR036118 UreE urease accessory, N-terminal domain superfamily AP3564_12085 084f01ca771a1b8d758bc58e70a08bdc 149 SUPERFAMILY SSF69737 75 141 1.83E-17 T 13-10-2018 IPR036675 UreE, C-terminal domain superfamily GO:0016151|GO:0019627|GO:0065003 AP3564_12085 084f01ca771a1b8d758bc58e70a08bdc 149 PIRSF PIRSF036402 1 149 2.3E-49 T 13-10-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 AP3564_14965 98efcf1552165b857106a5adb44b9b0d 175 Gene3D G3DSA:3.40.109.10 1 173 3.0E-43 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AP3564_14965 98efcf1552165b857106a5adb44b9b0d 175 SUPERFAMILY SSF55469 1 174 7.98E-41 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AP3564_14965 98efcf1552165b857106a5adb44b9b0d 175 Pfam PF00881 Nitroreductase family 86 151 1.4E-6 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 AP3564_14965 98efcf1552165b857106a5adb44b9b0d 175 Pfam PF00881 Nitroreductase family 7 62 7.7E-12 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 AP3564_19000 8b00915605ca5d13c260a39732fe8717 273 Pfam PF01578 Cytochrome C assembly protein 67 270 3.2E-31 T 13-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 AP3564_06490 c935a1ae885651ed070d378f826430ee 347 SUPERFAMILY SSF51161 244 323 5.22E-18 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily AP3564_06490 c935a1ae885651ed070d378f826430ee 347 Gene3D G3DSA:2.160.10.10 238 345 6.0E-18 T 13-10-2018 AP3564_06490 c935a1ae885651ed070d378f826430ee 347 SUPERFAMILY SSF53448 1 261 1.41E-76 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AP3564_06490 c935a1ae885651ed070d378f826430ee 347 Pfam PF00483 Nucleotidyl transferase 2 232 3.2E-46 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AP3564_06490 c935a1ae885651ed070d378f826430ee 347 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 267 297 4.1E-7 T 13-10-2018 IPR001451 Hexapeptide repeat AP3564_06490 c935a1ae885651ed070d378f826430ee 347 Gene3D G3DSA:3.90.550.10 1 237 1.7E-71 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AP3564_05215 0af5abbd8b388cfc9a15a178724dd3dc 492 TIGRFAM TIGR00444 mazG: MazG family protein 240 485 2.7E-103 T 13-10-2018 IPR011551 NTP pyrophosphohydrolase MazG AP3564_05215 0af5abbd8b388cfc9a15a178724dd3dc 492 SUPERFAMILY SSF101386 365 463 7.85E-22 T 13-10-2018 AP3564_05215 0af5abbd8b388cfc9a15a178724dd3dc 492 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 5 207 1.3E-19 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 AP3564_05215 0af5abbd8b388cfc9a15a178724dd3dc 492 SUPERFAMILY SSF53790 5 264 1.37E-25 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 AP3564_05215 0af5abbd8b388cfc9a15a178724dd3dc 492 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 256 329 5.2E-29 T 13-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core AP3564_05215 0af5abbd8b388cfc9a15a178724dd3dc 492 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 396 454 7.1E-5 T 13-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core AP3564_05215 0af5abbd8b388cfc9a15a178724dd3dc 492 Gene3D G3DSA:3.40.1010.10 1 129 7.3E-9 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 AP3564_05215 0af5abbd8b388cfc9a15a178724dd3dc 492 Gene3D G3DSA:1.10.287.1080 230 353 9.8E-44 T 13-10-2018 AP3564_05215 0af5abbd8b388cfc9a15a178724dd3dc 492 SUPERFAMILY SSF101386 233 335 6.71E-27 T 13-10-2018 AP3564_05215 0af5abbd8b388cfc9a15a178724dd3dc 492 PIRSF PIRSF002845 1 489 2.0E-220 T 13-10-2018 IPR024180 Bifunctional tetrapyrrole methylase/MazG NTP pyrophosphohydrolase, predicted AP3564_05215 0af5abbd8b388cfc9a15a178724dd3dc 492 Gene3D G3DSA:1.10.287.1080 357 490 6.2E-45 T 13-10-2018 AP3564_15615 a89512c1d417cabfad98472a1b7dba3a 435 SUPERFAMILY SSF51679 4 434 4.32E-104 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AP3564_15615 a89512c1d417cabfad98472a1b7dba3a 435 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 18 431 4.5E-117 T 13-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 AP3564_15615 a89512c1d417cabfad98472a1b7dba3a 435 Gene3D G3DSA:3.20.20.30 2 435 1.9E-112 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AP3564_15615 a89512c1d417cabfad98472a1b7dba3a 435 Pfam PF00296 Luciferase-like monooxygenase 25 387 2.9E-49 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AP3564_15615 a89512c1d417cabfad98472a1b7dba3a 435 PIRSF PIRSF000337 2 435 2.7E-134 T 13-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 AP3564_17265 7bd497e969de66bd31d5f3b6579c7a0e 300 Pfam PF14045 YIEGIA protein 8 287 1.2E-126 T 13-10-2018 IPR025918 YIEGIA protein AP3564_17265 7bd497e969de66bd31d5f3b6579c7a0e 300 ProDom PD128584 YPHB BH1976 TRANSMEMBRANE MEMBRANE SEAA 1 293 5.0E-126 T 13-10-2018 AP3564_06080 c295f1372a5473a8552d1162cad56714 141 SMART SM00422 6 74 1.2E-18 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AP3564_06080 c295f1372a5473a8552d1162cad56714 141 Gene3D G3DSA:1.10.1660.10 5 134 1.3E-26 T 13-10-2018 AP3564_06080 c295f1372a5473a8552d1162cad56714 141 SUPERFAMILY SSF46955 6 116 1.14E-22 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily AP3564_06080 c295f1372a5473a8552d1162cad56714 141 Pfam PF13411 MerR HTH family regulatory protein 6 71 6.6E-18 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AP3564_09910 8184d30d27d1f5dee0f98b95cc188025 277 SUPERFAMILY SSF102114 23 180 5.62E-7 T 13-10-2018 AP3564_09910 8184d30d27d1f5dee0f98b95cc188025 277 SMART SM00729 22 254 0.0034 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AP3564_09910 8184d30d27d1f5dee0f98b95cc188025 277 Pfam PF04055 Radical SAM superfamily 27 185 1.7E-13 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AP3564_11020 b60955baba5bf70de8ceb477c0a2926d 98 Gene3D G3DSA:2.40.30.80 1 97 6.1E-37 T 13-10-2018 IPR023105 YkvR-like superfamily AP3564_11020 b60955baba5bf70de8ceb477c0a2926d 98 SUPERFAMILY SSF159173 2 97 2.35E-35 T 13-10-2018 IPR023105 YkvR-like superfamily AP3564_11020 b60955baba5bf70de8ceb477c0a2926d 98 Pfam PF11514 Protein of unknown function (DUF3219) 5 97 1.5E-37 T 13-10-2018 IPR021596 Protein of unknown function DUF3219 AP3564_13750 b85183a06429620114c96efb0a8580de 62 Pfam PF05690 Thiazole biosynthesis protein ThiG 4 60 2.0E-15 T 13-10-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 AP3564_13750 b85183a06429620114c96efb0a8580de 62 SUPERFAMILY SSF110399 1 58 2.88E-13 T 13-10-2018 AP3564_13750 b85183a06429620114c96efb0a8580de 62 Gene3D G3DSA:3.20.20.70 1 62 2.0E-18 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_09755 cacd8d9484a967a5fee871dd615764a3 178 Pfam PF01931 Protein of unknown function DUF84 6 162 2.4E-49 T 13-10-2018 IPR026533 Non-canonical purine NTP phosphatase/PRRC1 AP3564_09755 cacd8d9484a967a5fee871dd615764a3 178 SUPERFAMILY SSF52972 1 168 2.49E-49 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AP3564_09755 cacd8d9484a967a5fee871dd615764a3 178 Hamap MF_00648 Non-canonical purine NTP phosphatase. 1 173 28.097 T 13-10-2018 IPR002786 Non-canonical purine NTP phosphatase AP3564_09755 cacd8d9484a967a5fee871dd615764a3 178 Gene3D G3DSA:3.90.950.10 1 175 4.6E-56 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AP3564_07715 3ae3eba48748b80ee78d9c78d9356825 238 Pfam PF00700 Bacterial flagellin C-terminal helical region 184 235 3.8E-16 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 AP3564_07715 3ae3eba48748b80ee78d9c78d9356825 238 PRINTS PR00207 Flagellin signature 109 132 4.1E-25 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 AP3564_07715 3ae3eba48748b80ee78d9c78d9356825 238 PRINTS PR00207 Flagellin signature 35 52 4.1E-25 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 AP3564_07715 3ae3eba48748b80ee78d9c78d9356825 238 PRINTS PR00207 Flagellin signature 74 93 4.1E-25 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 AP3564_07715 3ae3eba48748b80ee78d9c78d9356825 238 SUPERFAMILY SSF64518 1 235 6.41E-83 T 13-10-2018 AP3564_07715 3ae3eba48748b80ee78d9c78d9356825 238 Pfam PF00669 Bacterial flagellin N-terminal helical region 3 139 9.4E-46 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 AP3564_07715 3ae3eba48748b80ee78d9c78d9356825 238 Gene3D G3DSA:1.20.1330.10 42 232 7.0E-80 T 13-10-2018 AP3564_06550 efa93a96c92e3c04962c942b577218d9 63 Pfam PF01361 Tautomerase enzyme 2 57 5.9E-18 T 13-10-2018 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 AP3564_06550 efa93a96c92e3c04962c942b577218d9 63 Gene3D G3DSA:3.30.429.10 1 63 1.1E-23 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily AP3564_06550 efa93a96c92e3c04962c942b577218d9 63 SUPERFAMILY SSF55331 2 62 3.53E-19 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily AP3564_06550 efa93a96c92e3c04962c942b577218d9 63 TIGRFAM TIGR00013 taut: 4-oxalocrotonate tautomerase family enzyme 1 63 1.3E-22 T 13-10-2018 IPR018191 4-oxalocrotonate tautomerase, Pseudomonas-type GO:0006725|GO:0016853 AP3564_11815 5de0aa07b27a3908e66d2e4f6f33440d 48 Pfam PF12841 YvrJ protein family 8 37 5.5E-17 T 13-10-2018 IPR024419 Protein of unknown function YvrJ AP3564_14735 43bc1e376d61c990b4b01c4af2f700ff 96 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 77 8.9E-9 T 13-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AP3564_14735 43bc1e376d61c990b4b01c4af2f700ff 96 SUPERFAMILY SSF89360 1 78 1.16E-11 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 AP3564_14735 43bc1e376d61c990b4b01c4af2f700ff 96 PIRSF PIRSF034852 1 95 1.7E-36 T 13-10-2018 IPR008326 Uncharacterised conserved protein UCP034852 AP3564_17575 c31100243c63ec406ef62e901c8d1d9b 184 ProSitePatterns PS00893 Nudix box signature. 77 98 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AP3564_17575 c31100243c63ec406ef62e901c8d1d9b 184 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 6 177 2.0E-25 T 13-10-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 AP3564_17575 c31100243c63ec406ef62e901c8d1d9b 184 Pfam PF00293 NUDIX domain 42 157 6.1E-19 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AP3564_17575 c31100243c63ec406ef62e901c8d1d9b 184 PRINTS PR00502 NUDIX hydrolase family signature 72 86 9.3E-5 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AP3564_17575 c31100243c63ec406ef62e901c8d1d9b 184 PRINTS PR00502 NUDIX hydrolase family signature 86 101 9.3E-5 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AP3564_17575 c31100243c63ec406ef62e901c8d1d9b 184 Gene3D G3DSA:3.90.79.10 3 183 2.5E-58 T 13-10-2018 AP3564_17575 c31100243c63ec406ef62e901c8d1d9b 184 SUPERFAMILY SSF55811 7 178 3.11E-52 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AP3564_17765 4b0e6da39b4af35c130a3e1679abc994 325 Pfam PF06081 Aromatic acid exporter family member 1 4 144 5.3E-51 T 13-10-2018 IPR010343 Aromatic acid exporter family member 1 AP3564_17765 4b0e6da39b4af35c130a3e1679abc994 325 Pfam PF11728 Putative aromatic acid exporter C-terminal domain 148 312 1.7E-55 T 13-10-2018 IPR021062 Putative aromatic acid exporter, C-terminal AP3564_17765 4b0e6da39b4af35c130a3e1679abc994 325 Gene3D G3DSA:1.20.120.940 143 317 1.5E-52 T 13-10-2018 IPR038323 Putative aromatic acid exporter, C-terminal domain superfamily AP3564_10730 1501c22a208ab3479b4a033619e2c6c3 332 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 48 6.0E-16 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AP3564_10730 1501c22a208ab3479b4a033619e2c6c3 332 ProSitePatterns PS00356 LacI-type HTH domain signature. 5 23 - T 13-10-2018 AP3564_10730 1501c22a208ab3479b4a033619e2c6c3 332 Gene3D G3DSA:3.40.50.2300 162 283 1.8E-66 T 13-10-2018 AP3564_10730 1501c22a208ab3479b4a033619e2c6c3 332 SUPERFAMILY SSF47413 3 59 3.05E-15 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AP3564_10730 1501c22a208ab3479b4a033619e2c6c3 332 Gene3D G3DSA:1.10.260.40 1 59 6.2E-20 T 13-10-2018 AP3564_10730 1501c22a208ab3479b4a033619e2c6c3 332 Pfam PF13377 Periplasmic binding protein-like domain 168 324 2.8E-32 T 13-10-2018 AP3564_10730 1501c22a208ab3479b4a033619e2c6c3 332 Gene3D G3DSA:3.40.50.2300 65 306 1.8E-66 T 13-10-2018 AP3564_10730 1501c22a208ab3479b4a033619e2c6c3 332 SMART SM00354 2 71 4.7E-27 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AP3564_10730 1501c22a208ab3479b4a033619e2c6c3 332 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 4 14 5.4E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AP3564_10730 1501c22a208ab3479b4a033619e2c6c3 332 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 14 24 5.4E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AP3564_10730 1501c22a208ab3479b4a033619e2c6c3 332 SUPERFAMILY SSF53822 58 315 2.36E-60 T 13-10-2018 IPR028082 Periplasmic binding protein-like I AP3564_17995 fa78fcf28e672c64659dd295c9708db5 718 Pfam PF09299 Mu transposase, C-terminal 510 569 7.4E-9 T 13-10-2018 IPR015378 Transposase-like, Mu, C-terminal AP3564_17995 fa78fcf28e672c64659dd295c9708db5 718 Pfam PF00665 Integrase core domain 279 418 3.0E-12 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AP3564_17995 fa78fcf28e672c64659dd295c9708db5 718 Gene3D G3DSA:3.30.420.10 276 491 5.2E-20 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AP3564_17995 fa78fcf28e672c64659dd295c9708db5 718 SUPERFAMILY SSF53098 281 466 4.86E-9 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_00290 40f768098349c378d4de38123d0f739e 257 Gene3D G3DSA:3.40.50.300 1 249 5.6E-59 T 13-10-2018 AP3564_00290 40f768098349c378d4de38123d0f739e 257 SUPERFAMILY SSF52540 4 246 1.02E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_00290 40f768098349c378d4de38123d0f739e 257 SMART SM00382 29 225 1.5E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_00290 40f768098349c378d4de38123d0f739e 257 Pfam PF00005 ABC transporter 21 176 4.5E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_16865 b2b3091ba6d1ca3bc5c436fd0ca6350f 622 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 17 520 2.7E-209 T 13-10-2018 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005886|GO:0015990|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 AP3564_16865 b2b3091ba6d1ca3bc5c436fd0ca6350f 622 SUPERFAMILY SSF81442 14 522 1.09E-179 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_16865 b2b3091ba6d1ca3bc5c436fd0ca6350f 622 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 244 298 - T 13-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_16865 b2b3091ba6d1ca3bc5c436fd0ca6350f 622 PRINTS PR01165 Cytochrome c oxidase subunit I signature 63 86 1.8E-101 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_16865 b2b3091ba6d1ca3bc5c436fd0ca6350f 622 PRINTS PR01165 Cytochrome c oxidase subunit I signature 90 114 1.8E-101 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_16865 b2b3091ba6d1ca3bc5c436fd0ca6350f 622 PRINTS PR01165 Cytochrome c oxidase subunit I signature 191 210 1.8E-101 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_16865 b2b3091ba6d1ca3bc5c436fd0ca6350f 622 PRINTS PR01165 Cytochrome c oxidase subunit I signature 242 263 1.8E-101 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_16865 b2b3091ba6d1ca3bc5c436fd0ca6350f 622 PRINTS PR01165 Cytochrome c oxidase subunit I signature 16 41 1.8E-101 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_16865 b2b3091ba6d1ca3bc5c436fd0ca6350f 622 PRINTS PR01165 Cytochrome c oxidase subunit I signature 347 365 1.8E-101 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_16865 b2b3091ba6d1ca3bc5c436fd0ca6350f 622 PRINTS PR01165 Cytochrome c oxidase subunit I signature 132 144 1.8E-101 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_16865 b2b3091ba6d1ca3bc5c436fd0ca6350f 622 PRINTS PR01165 Cytochrome c oxidase subunit I signature 312 333 1.8E-101 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_16865 b2b3091ba6d1ca3bc5c436fd0ca6350f 622 PRINTS PR01165 Cytochrome c oxidase subunit I signature 375 394 1.8E-101 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_16865 b2b3091ba6d1ca3bc5c436fd0ca6350f 622 PRINTS PR01165 Cytochrome c oxidase subunit I signature 288 303 1.8E-101 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_16865 b2b3091ba6d1ca3bc5c436fd0ca6350f 622 PRINTS PR01165 Cytochrome c oxidase subunit I signature 162 180 1.8E-101 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_16865 b2b3091ba6d1ca3bc5c436fd0ca6350f 622 PRINTS PR01165 Cytochrome c oxidase subunit I signature 425 446 1.8E-101 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_16865 b2b3091ba6d1ca3bc5c436fd0ca6350f 622 Gene3D G3DSA:1.20.210.10 2 529 1.1E-205 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_16865 b2b3091ba6d1ca3bc5c436fd0ca6350f 622 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 25 469 2.1E-149 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_07575 7b5c69271a8a4575b2119ec6f1c14479 228 Pfam PF00535 Glycosyl transferase family 2 6 164 1.2E-29 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AP3564_07575 7b5c69271a8a4575b2119ec6f1c14479 228 SUPERFAMILY SSF53448 2 214 1.21E-42 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AP3564_07575 7b5c69271a8a4575b2119ec6f1c14479 228 Gene3D G3DSA:3.90.550.10 1 227 2.5E-42 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AP3564_09890 8cba68e9817d7138bdeffb092a8c5ae9 284 Gene3D G3DSA:1.10.3720.10 21 277 2.2E-59 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_09890 8cba68e9817d7138bdeffb092a8c5ae9 284 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 20 277 1.7E-122 T 13-10-2018 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 AP3564_09890 8cba68e9817d7138bdeffb092a8c5ae9 284 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 269 1.2E-12 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AP3564_09890 8cba68e9817d7138bdeffb092a8c5ae9 284 SUPERFAMILY SSF161098 19 270 2.62E-51 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_09890 8cba68e9817d7138bdeffb092a8c5ae9 284 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 21 276 3.1E-94 T 13-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 AP3564_10705 0cebbcc6bb261d6e2076d0b30f12f286 115 Gene3D G3DSA:1.20.1270.360 3 115 1.1E-34 T 13-10-2018 AP3564_10705 0cebbcc6bb261d6e2076d0b30f12f286 115 Pfam PF03860 Domain of Unknown Function (DUF326) 10 29 6.3E-5 T 13-10-2018 IPR005560 Protein of unknown function DUF326 AP3564_10705 0cebbcc6bb261d6e2076d0b30f12f286 115 Pfam PF03860 Domain of Unknown Function (DUF326) 95 113 5.2E-5 T 13-10-2018 IPR005560 Protein of unknown function DUF326 AP3564_13115 27a5651b5d1e0d76c01137a4163805ad 82 Pfam PF01548 Transposase 7 76 9.1E-11 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_18520 a13c7a440221c3aaf6d583fd362bcd9b 771 SMART SM00849 520 718 4.3E-5 T 13-10-2018 IPR001279 Metallo-beta-lactamase AP3564_18520 a13c7a440221c3aaf6d583fd362bcd9b 771 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 230 399 3.8E-40 T 13-10-2018 IPR004477 ComEC/Rec2-related protein AP3564_18520 a13c7a440221c3aaf6d583fd362bcd9b 771 Pfam PF00753 Metallo-beta-lactamase superfamily 506 717 1.5E-12 T 13-10-2018 IPR001279 Metallo-beta-lactamase AP3564_18520 a13c7a440221c3aaf6d583fd362bcd9b 771 Gene3D G3DSA:3.60.15.10 499 760 7.8E-68 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AP3564_18520 a13c7a440221c3aaf6d583fd362bcd9b 771 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 69 747 1.5E-137 T 13-10-2018 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 AP3564_18520 a13c7a440221c3aaf6d583fd362bcd9b 771 Pfam PF13567 Domain of unknown function (DUF4131) 25 170 3.9E-24 T 13-10-2018 IPR025405 Domain of unknown function DUF4131 AP3564_18520 a13c7a440221c3aaf6d583fd362bcd9b 771 SUPERFAMILY SSF56281 498 753 2.98E-48 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AP3564_18520 a13c7a440221c3aaf6d583fd362bcd9b 771 Pfam PF03772 Competence protein 209 466 3.0E-58 T 13-10-2018 IPR004477 ComEC/Rec2-related protein AP3564_13745 041117e5168d493ba66ff34f4ee78dfe 67 Pfam PF02597 ThiS family 6 67 8.2E-13 T 13-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 AP3564_13745 041117e5168d493ba66ff34f4ee78dfe 67 Gene3D G3DSA:3.10.20.30 3 67 9.3E-21 T 13-10-2018 IPR012675 Beta-grasp domain superfamily AP3564_13745 041117e5168d493ba66ff34f4ee78dfe 67 SUPERFAMILY SSF54285 3 66 1.24E-18 T 13-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp AP3564_13745 041117e5168d493ba66ff34f4ee78dfe 67 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 4 67 7.3E-21 T 13-10-2018 IPR010035 ThiS, thiamine-biosynthesis AP3564_14715 b2e8b578b2054ca1e79467c35f2ed749 247 Gene3D G3DSA:3.30.420.10 52 225 1.8E-40 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AP3564_14715 b2e8b578b2054ca1e79467c35f2ed749 247 SUPERFAMILY SSF53098 48 227 3.0E-42 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_14715 b2e8b578b2054ca1e79467c35f2ed749 247 Pfam PF00929 Exonuclease 58 215 5.9E-26 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AP3564_14715 b2e8b578b2054ca1e79467c35f2ed749 247 SMART SM00479 56 225 5.5E-34 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AP3564_01460 802f1fad24e289716ef7a06d7e1b57e5 354 Gene3D G3DSA:2.40.110.10 125 220 1.3E-12 T 13-10-2018 AP3564_01460 802f1fad24e289716ef7a06d7e1b57e5 354 Gene3D G3DSA:1.10.540.10 7 112 1.8E-7 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AP3564_01460 802f1fad24e289716ef7a06d7e1b57e5 354 SUPERFAMILY SSF56645 9 216 2.49E-29 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AP3564_01460 802f1fad24e289716ef7a06d7e1b57e5 354 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 12 110 7.9E-6 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AP3564_06980 fbfdca34500ddb4ebb189176bb81b259 248 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 3 236 16.666 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AP3564_06980 fbfdca34500ddb4ebb189176bb81b259 248 Pfam PF00902 Sec-independent protein translocase protein (TatC) 10 218 7.3E-62 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AP3564_06980 fbfdca34500ddb4ebb189176bb81b259 248 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 81 99 1.6E-41 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AP3564_06980 fbfdca34500ddb4ebb189176bb81b259 248 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 7 34 1.6E-41 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AP3564_06980 fbfdca34500ddb4ebb189176bb81b259 248 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 99 125 1.6E-41 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AP3564_06980 fbfdca34500ddb4ebb189176bb81b259 248 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 151 179 1.6E-41 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AP3564_06980 fbfdca34500ddb4ebb189176bb81b259 248 ProSitePatterns PS01218 TatC family signature. 151 170 - T 13-10-2018 IPR019820 Sec-independent periplasmic protein translocase, conserved site AP3564_06980 fbfdca34500ddb4ebb189176bb81b259 248 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 9 223 1.5E-71 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AP3564_04480 b30da6e27b638244f2f1ec0e00c485a2 209 SUPERFAMILY SSF51735 1 208 3.24E-35 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_04480 b30da6e27b638244f2f1ec0e00c485a2 209 Pfam PF13460 NAD(P)H-binding 7 196 2.5E-24 T 13-10-2018 IPR016040 NAD(P)-binding domain AP3564_04480 b30da6e27b638244f2f1ec0e00c485a2 209 Gene3D G3DSA:3.40.50.720 1 209 9.8E-59 T 13-10-2018 AP3564_18035 0a2fe6a85d56f365d49d1d529b7b8a4f 555 SMART SM00487 56 234 3.8E-29 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AP3564_18035 0a2fe6a85d56f365d49d1d529b7b8a4f 555 SUPERFAMILY SSF52540 14 254 1.08E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_18035 0a2fe6a85d56f365d49d1d529b7b8a4f 555 Pfam PF00271 Helicase conserved C-terminal domain 359 465 7.3E-21 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_18035 0a2fe6a85d56f365d49d1d529b7b8a4f 555 Pfam PF00176 SNF2 family N-terminal domain 79 298 2.9E-37 T 13-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 AP3564_18035 0a2fe6a85d56f365d49d1d529b7b8a4f 555 SMART SM00490 385 465 2.6E-21 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_18035 0a2fe6a85d56f365d49d1d529b7b8a4f 555 Gene3D G3DSA:3.40.50.300 337 540 1.2E-47 T 13-10-2018 AP3564_18035 0a2fe6a85d56f365d49d1d529b7b8a4f 555 Gene3D G3DSA:3.40.50.10810 57 308 1.1E-58 T 13-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily AP3564_18035 0a2fe6a85d56f365d49d1d529b7b8a4f 555 SUPERFAMILY SSF52540 168 518 3.45E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_10955 04bf42fe297b40284695b619f8817e3a 126 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 120 1.4E-7 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AP3564_10955 04bf42fe297b40284695b619f8817e3a 126 SUPERFAMILY SSF54593 2 124 4.95E-20 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AP3564_10955 04bf42fe297b40284695b619f8817e3a 126 Gene3D G3DSA:3.10.180.10 1 124 2.7E-23 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AP3564_14860 0d0c0259f27798e31fc6e80b19410cda 203 Gene3D G3DSA:3.40.50.1820 1 199 2.7E-47 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold AP3564_14860 0d0c0259f27798e31fc6e80b19410cda 203 Pfam PF01738 Dienelactone hydrolase family 82 179 8.3E-7 T 13-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 AP3564_14860 0d0c0259f27798e31fc6e80b19410cda 203 SUPERFAMILY SSF53474 2 199 7.43E-55 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold AP3564_05105 5e4499ff3889ab1357883003ed1b3c5d 395 Pfam PF06725 3D domain 334 394 2.3E-22 T 13-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 AP3564_05105 5e4499ff3889ab1357883003ed1b3c5d 395 Gene3D G3DSA:2.20.230.10 167 284 1.3E-16 T 13-10-2018 AP3564_05105 5e4499ff3889ab1357883003ed1b3c5d 395 SMART SM01208 207 285 1.4E-22 T 13-10-2018 IPR011098 G5 domain AP3564_05105 5e4499ff3889ab1357883003ed1b3c5d 395 SUPERFAMILY SSF50685 335 384 1.29E-8 T 13-10-2018 IPR036908 RlpA-like domain superfamily AP3564_05105 5e4499ff3889ab1357883003ed1b3c5d 395 Pfam PF03990 Domain of unknown function (DUF348) 40 78 5.2E-11 T 13-10-2018 IPR007137 Resuscitation-promoting factor, domain of unknown function DUF348 AP3564_05105 5e4499ff3889ab1357883003ed1b3c5d 395 Pfam PF03990 Domain of unknown function (DUF348) 97 137 1.3E-12 T 13-10-2018 IPR007137 Resuscitation-promoting factor, domain of unknown function DUF348 AP3564_05105 5e4499ff3889ab1357883003ed1b3c5d 395 Pfam PF03990 Domain of unknown function (DUF348) 154 193 6.4E-12 T 13-10-2018 IPR007137 Resuscitation-promoting factor, domain of unknown function DUF348 AP3564_05105 5e4499ff3889ab1357883003ed1b3c5d 395 Pfam PF07501 G5 domain 212 284 1.0E-18 T 13-10-2018 IPR011098 G5 domain AP3564_19300 9d1268d7a0ac797c86e97f3719472a79 464 ProDom PD042352 MG349 G12_ORF413 HOMOLOG 29 169 0.007 T 13-10-2018 AP3564_19300 9d1268d7a0ac797c86e97f3719472a79 464 Pfam PF07261 Replication initiation and membrane attachment 329 391 2.5E-11 T 13-10-2018 IPR006343 DnaD domain AP3564_00575 48ac7aa60a656f573b7c5eb472ad7c1b 326 Gene3D G3DSA:3.10.180.10 141 300 2.7E-47 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AP3564_00575 48ac7aa60a656f573b7c5eb472ad7c1b 326 TIGRFAM TIGR02295 HpaD: 3,4-dihydroxyphenylacetate 2,3-dioxygenase 5 299 5.6E-132 T 13-10-2018 IPR011981 3,4-dihydroxyphenylacetate 2,3-dioxygenase, Mn/Fe-type AP3564_00575 48ac7aa60a656f573b7c5eb472ad7c1b 326 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 11 117 4.2E-6 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AP3564_00575 48ac7aa60a656f573b7c5eb472ad7c1b 326 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 141 258 6.2E-17 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AP3564_00575 48ac7aa60a656f573b7c5eb472ad7c1b 326 Gene3D G3DSA:3.10.180.10 1 139 2.6E-42 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AP3564_00575 48ac7aa60a656f573b7c5eb472ad7c1b 326 ProSitePatterns PS00082 Extradiol ring-cleavage dioxygenases signature. 236 257 - T 13-10-2018 IPR000486 Extradiol ring-cleavage dioxygenase, class I /II GO:0003824|GO:0006725|GO:0008198|GO:0055114 AP3564_00575 48ac7aa60a656f573b7c5eb472ad7c1b 326 SUPERFAMILY SSF54593 5 280 3.35E-47 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AP3564_04470 c9c60765072001926dee64f109383bb0 253 Pfam PF00005 ABC transporter 23 171 1.0E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_04470 c9c60765072001926dee64f109383bb0 253 SMART SM00382 32 220 1.0E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_04470 c9c60765072001926dee64f109383bb0 253 Gene3D G3DSA:3.40.50.300 1 246 1.5E-64 T 13-10-2018 AP3564_04470 c9c60765072001926dee64f109383bb0 253 SUPERFAMILY SSF52540 3 224 7.14E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_08850 f9befd73dbdfb8de34f3ef68f088daa1 442 Pfam PF02386 Cation transport protein 38 425 8.9E-62 T 13-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 AP3564_08850 f9befd73dbdfb8de34f3ef68f088daa1 442 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 32 413 4.3E-111 T 13-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 AP3564_19210 bbc2e951e5ced57d0cc8acc31c685bda 302 SUPERFAMILY SSF53098 87 300 1.67E-49 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_19210 bbc2e951e5ced57d0cc8acc31c685bda 302 Pfam PF11858 Domain of unknown function (DUF3378) 3 76 2.3E-26 T 13-10-2018 IPR024568 Ribonuclease HIII, N-terminal AP3564_19210 bbc2e951e5ced57d0cc8acc31c685bda 302 PIRSF PIRSF037748 1 302 1.6E-116 T 13-10-2018 IPR004641 Ribonuclease HIII GO:0004523|GO:0005737|GO:0016070 AP3564_19210 bbc2e951e5ced57d0cc8acc31c685bda 302 Gene3D G3DSA:3.30.310.10 1 87 7.7E-28 T 13-10-2018 IPR012295 TBP domain superfamily AP3564_19210 bbc2e951e5ced57d0cc8acc31c685bda 302 Hamap MF_00053 Ribonuclease HIII [rnhC]. 1 301 34.188 T 13-10-2018 IPR004641 Ribonuclease HIII GO:0004523|GO:0005737|GO:0016070 AP3564_19210 bbc2e951e5ced57d0cc8acc31c685bda 302 Pfam PF01351 Ribonuclease HII 89 294 1.8E-46 T 13-10-2018 IPR024567 Ribonuclease HII/HIII domain AP3564_19210 bbc2e951e5ced57d0cc8acc31c685bda 302 Gene3D G3DSA:3.30.420.10 88 302 8.6E-81 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AP3564_19210 bbc2e951e5ced57d0cc8acc31c685bda 302 TIGRFAM TIGR00716 rnhC: ribonuclease HIII 5 293 1.1E-90 T 13-10-2018 IPR004641 Ribonuclease HIII GO:0004523|GO:0005737|GO:0016070 AP3564_00295 dbc54a40b3ea84b18c8615a360e4c6a4 406 Gene3D G3DSA:3.40.50.2300 50 372 4.0E-112 T 13-10-2018 AP3564_00295 dbc54a40b3ea84b18c8615a360e4c6a4 406 Gene3D G3DSA:3.40.50.2300 162 374 4.0E-112 T 13-10-2018 AP3564_00295 dbc54a40b3ea84b18c8615a360e4c6a4 406 SUPERFAMILY SSF53822 40 383 4.4E-78 T 13-10-2018 IPR028082 Periplasmic binding protein-like I AP3564_00295 dbc54a40b3ea84b18c8615a360e4c6a4 406 Pfam PF13458 Periplasmic binding protein 40 378 2.4E-69 T 13-10-2018 IPR028081 Leucine-binding protein domain AP3564_10620 3e05ff263a498905d8c61164c447181e 320 SUPERFAMILY SSF49503 199 303 1.99E-32 T 13-10-2018 IPR008972 Cupredoxin AP3564_10620 3e05ff263a498905d8c61164c447181e 320 Pfam PF07732 Multicopper oxidase 51 148 1.4E-31 T 13-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 AP3564_10620 3e05ff263a498905d8c61164c447181e 320 PRINTS PR00695 Copper containing nitrite reductase signature 118 133 1.6E-5 T 13-10-2018 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 AP3564_10620 3e05ff263a498905d8c61164c447181e 320 PRINTS PR00695 Copper containing nitrite reductase signature 54 70 1.6E-5 T 13-10-2018 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 AP3564_10620 3e05ff263a498905d8c61164c447181e 320 ProSitePatterns PS00196 Type-1 copper (blue) proteins signature. 289 304 - T 13-10-2018 IPR028871 Blue (type 1) copper protein, binding site AP3564_10620 3e05ff263a498905d8c61164c447181e 320 SUPERFAMILY SSF49503 28 148 3.32E-34 T 13-10-2018 IPR008972 Cupredoxin AP3564_10620 3e05ff263a498905d8c61164c447181e 320 Pfam PF07731 Multicopper oxidase 193 303 2.6E-21 T 13-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 AP3564_10620 3e05ff263a498905d8c61164c447181e 320 Gene3D G3DSA:2.60.40.420 7 148 4.1E-41 T 13-10-2018 IPR008972 Cupredoxin AP3564_10620 3e05ff263a498905d8c61164c447181e 320 Gene3D G3DSA:2.60.40.420 152 320 6.9E-44 T 13-10-2018 IPR008972 Cupredoxin AP3564_04510 dd31308b0db9be370a8df0e4e79f685b 341 Pfam PF12698 ABC-2 family transporter protein 18 332 5.9E-36 T 13-10-2018 AP3564_19085 9fe9a4a46d4954ccaef0461208022410 119 Pfam PF04237 YjbR 11 103 1.6E-22 T 13-10-2018 IPR007351 Uncharacterised protein YjbR AP3564_19085 9fe9a4a46d4954ccaef0461208022410 119 Gene3D G3DSA:3.90.1150.30 1 119 4.5E-44 T 13-10-2018 IPR038056 YjbR-like superfamily AP3564_19085 9fe9a4a46d4954ccaef0461208022410 119 SUPERFAMILY SSF142906 1 116 9.42E-41 T 13-10-2018 IPR038056 YjbR-like superfamily AP3564_16470 8b2469e7200ab0097cf3cab8beedabac 291 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 291 9.9E-86 T 13-10-2018 IPR005229 Conserved hypothetical protein CHP00255 AP3564_16470 8b2469e7200ab0097cf3cab8beedabac 291 Pfam PF08340 Domain of unknown function (DUF1732) 208 291 3.4E-36 T 13-10-2018 IPR013551 Domain of unknown function DUF1732 AP3564_16470 8b2469e7200ab0097cf3cab8beedabac 291 Pfam PF03755 YicC-like family, N-terminal region 3 156 8.5E-41 T 13-10-2018 IPR013527 YicC-like, N-terminal AP3564_15870 02da5b8f35016733bcf0f9fc81716432 264 PIRSF PIRSF021288 1 263 3.4E-138 T 13-10-2018 IPR016784 Uncharacterised protein UCP021288 with ACT domain AP3564_15870 02da5b8f35016733bcf0f9fc81716432 264 Pfam PF11868 Protein of unknown function (DUF3388) 72 252 1.0E-100 T 13-10-2018 IPR024514 Domain of unknown function DUF3388 AP3564_15870 02da5b8f35016733bcf0f9fc81716432 264 SUPERFAMILY SSF55021 5 72 2.89E-7 T 13-10-2018 AP3564_18925 8d51ee05efd77bd1b01ba8d25db3f234 172 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 7 159 4.0E-26 T 13-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 AP3564_18925 8d51ee05efd77bd1b01ba8d25db3f234 172 Pfam PF04093 rod shape-determining protein MreD 5 162 2.3E-30 T 13-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 AP3564_07315 a0519a1c8af53a01d105ba1a6ccfe582 234 Pfam PF00005 ABC transporter 16 159 9.0E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_07315 a0519a1c8af53a01d105ba1a6ccfe582 234 SUPERFAMILY SSF52540 3 214 1.5E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_07315 a0519a1c8af53a01d105ba1a6ccfe582 234 SMART SM00382 25 210 6.6E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_07315 a0519a1c8af53a01d105ba1a6ccfe582 234 Gene3D G3DSA:3.40.50.300 1 231 7.0E-63 T 13-10-2018 AP3564_18840 ccb25c1f55d29188adf176369d78eb72 362 SUPERFAMILY SSF53383 2 361 3.71E-85 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_18840 ccb25c1f55d29188adf176369d78eb72 362 Gene3D G3DSA:3.90.1150.10 266 357 5.1E-107 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_18840 ccb25c1f55d29188adf176369d78eb72 362 Pfam PF00266 Aminotransferase class-V 9 353 7.3E-66 T 13-10-2018 IPR000192 Aminotransferase class V domain AP3564_18840 ccb25c1f55d29188adf176369d78eb72 362 Gene3D G3DSA:1.10.260.50 2 265 5.1E-107 T 13-10-2018 AP3564_18840 ccb25c1f55d29188adf176369d78eb72 362 PIRSF PIRSF005572 1 362 3.2E-104 T 13-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 AP3564_18840 ccb25c1f55d29188adf176369d78eb72 362 Gene3D G3DSA:3.40.640.10 48 221 5.1E-107 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_07375 d59095333b25961603d5b3521f5c28fa 314 PRINTS PR00690 Adhesin family signature 81 98 2.3E-39 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 AP3564_07375 d59095333b25961603d5b3521f5c28fa 314 PRINTS PR00690 Adhesin family signature 37 55 2.3E-39 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 AP3564_07375 d59095333b25961603d5b3521f5c28fa 314 PRINTS PR00690 Adhesin family signature 244 262 2.3E-39 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 AP3564_07375 d59095333b25961603d5b3521f5c28fa 314 PRINTS PR00690 Adhesin family signature 68 81 2.3E-39 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 AP3564_07375 d59095333b25961603d5b3521f5c28fa 314 PRINTS PR00690 Adhesin family signature 191 212 2.3E-39 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 AP3564_07375 d59095333b25961603d5b3521f5c28fa 314 PRINTS PR00690 Adhesin family signature 275 294 2.3E-39 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 AP3564_07375 d59095333b25961603d5b3521f5c28fa 314 SUPERFAMILY SSF53807 36 310 1.62E-77 T 13-10-2018 AP3564_07375 d59095333b25961603d5b3521f5c28fa 314 Gene3D G3DSA:3.40.50.1980 36 178 7.6E-43 T 13-10-2018 AP3564_07375 d59095333b25961603d5b3521f5c28fa 314 Pfam PF01297 Zinc-uptake complex component A periplasmic 40 308 9.0E-67 T 13-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 AP3564_07375 d59095333b25961603d5b3521f5c28fa 314 PRINTS PR00691 Adhesin B signature 37 58 3.7E-21 T 13-10-2018 IPR006129 Adhesin B GO:0007155 AP3564_07375 d59095333b25961603d5b3521f5c28fa 314 PRINTS PR00691 Adhesin B signature 81 100 3.7E-21 T 13-10-2018 IPR006129 Adhesin B GO:0007155 AP3564_07375 d59095333b25961603d5b3521f5c28fa 314 PRINTS PR00691 Adhesin B signature 288 306 3.7E-21 T 13-10-2018 IPR006129 Adhesin B GO:0007155 AP3564_07375 d59095333b25961603d5b3521f5c28fa 314 PRINTS PR00691 Adhesin B signature 267 285 3.7E-21 T 13-10-2018 IPR006129 Adhesin B GO:0007155 AP3564_07375 d59095333b25961603d5b3521f5c28fa 314 PRINTS PR00691 Adhesin B signature 62 80 3.7E-21 T 13-10-2018 IPR006129 Adhesin B GO:0007155 AP3564_07375 d59095333b25961603d5b3521f5c28fa 314 PRINTS PR00691 Adhesin B signature 191 208 3.7E-21 T 13-10-2018 IPR006129 Adhesin B GO:0007155 AP3564_07375 d59095333b25961603d5b3521f5c28fa 314 Gene3D G3DSA:3.40.50.1980 182 310 7.2E-46 T 13-10-2018 AP3564_10960 001bea1db31143c803b607e3def0c00f 347 Gene3D G3DSA:3.20.20.30 1 346 4.0E-88 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AP3564_10960 001bea1db31143c803b607e3def0c00f 347 Pfam PF00296 Luciferase-like monooxygenase 1 296 7.3E-47 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AP3564_10960 001bea1db31143c803b607e3def0c00f 347 SUPERFAMILY SSF51679 1 337 8.48E-81 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AP3564_10960 001bea1db31143c803b607e3def0c00f 347 TIGRFAM TIGR03858 LLM_2I7G: probable oxidoreductase, LLM family 2 337 8.0E-155 T 13-10-2018 IPR022290 Conserved hypothetical protein CHP03858, luciferase-like monooxygenase, putative AP3564_10250 883a31f1cc24676373c1d3b3d75c31a8 113 Pfam PF07098 Protein of unknown function (DUF1360) 10 110 3.7E-35 T 13-10-2018 IPR010773 Mycobacterium phage PG1, Gp7 AP3564_13990 7e9429809d7e2ff027dfc1e9c7b28df0 98 SMART SM00450 5 97 5.4E-17 T 13-10-2018 IPR001763 Rhodanese-like domain AP3564_13990 7e9429809d7e2ff027dfc1e9c7b28df0 98 SUPERFAMILY SSF52821 1 94 9.56E-33 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily AP3564_13990 7e9429809d7e2ff027dfc1e9c7b28df0 98 Gene3D G3DSA:3.40.250.10 1 98 1.5E-30 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily AP3564_13990 7e9429809d7e2ff027dfc1e9c7b28df0 98 Pfam PF00581 Rhodanese-like domain 5 94 3.9E-15 T 13-10-2018 IPR001763 Rhodanese-like domain AP3564_06040 dd6f318397d1ea153350df8f6f1ba7b2 261 SUPERFAMILY SSF46955 6 111 1.65E-28 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily AP3564_06040 dd6f318397d1ea153350df8f6f1ba7b2 261 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 8 19 9.5E-6 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AP3564_06040 dd6f318397d1ea153350df8f6f1ba7b2 261 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 43 63 9.5E-6 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AP3564_06040 dd6f318397d1ea153350df8f6f1ba7b2 261 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 19 32 9.5E-6 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AP3564_06040 dd6f318397d1ea153350df8f6f1ba7b2 261 Pfam PF13411 MerR HTH family regulatory protein 7 75 3.4E-19 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AP3564_06040 dd6f318397d1ea153350df8f6f1ba7b2 261 SMART SM00422 7 76 4.3E-22 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AP3564_06040 dd6f318397d1ea153350df8f6f1ba7b2 261 Gene3D G3DSA:1.10.1660.10 5 145 1.4E-34 T 13-10-2018 AP3564_07175 29a9462b8c7a74df83cfd8132582417c 434 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 71 82 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AP3564_07175 29a9462b8c7a74df83cfd8132582417c 434 Gene3D G3DSA:3.30.70.3270 3 122 9.1E-9 T 13-10-2018 AP3564_07175 29a9462b8c7a74df83cfd8132582417c 434 Pfam PF13534 4Fe-4S dicluster domain 20 85 1.8E-12 T 13-10-2018 AP3564_07175 29a9462b8c7a74df83cfd8132582417c 434 SUPERFAMILY SSF54862 16 114 9.21E-19 T 13-10-2018 AP3564_07175 29a9462b8c7a74df83cfd8132582417c 434 PIRSF PIRSF000139 1 434 3.3E-126 T 13-10-2018 AP3564_07175 29a9462b8c7a74df83cfd8132582417c 434 Pfam PF02754 Cysteine-rich domain 191 273 6.7E-17 T 13-10-2018 IPR004017 Cysteine-rich domain AP3564_07175 29a9462b8c7a74df83cfd8132582417c 434 Pfam PF02754 Cysteine-rich domain 321 406 4.3E-16 T 13-10-2018 IPR004017 Cysteine-rich domain AP3564_03840 fa841eb22ddf930b5da92b5ab0c0dd9a 244 Gene3D G3DSA:2.40.100.10 89 229 1.3E-60 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily AP3564_03840 fa841eb22ddf930b5da92b5ab0c0dd9a 244 SMART SM00796 3 204 1.5E-96 T 13-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D AP3564_03840 fa841eb22ddf930b5da92b5ab0c0dd9a 244 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 4 204 1.6E-75 T 13-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D AP3564_03840 fa841eb22ddf930b5da92b5ab0c0dd9a 244 Gene3D G3DSA:3.30.1360.40 1 83 4.3E-23 T 13-10-2018 AP3564_03840 fa841eb22ddf930b5da92b5ab0c0dd9a 244 TIGRFAM TIGR00370 TIGR00370: sensor histidine kinase inhibitor, KipI family 8 213 4.0E-70 T 13-10-2018 IPR010016 KipI family KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 AP3564_03840 fa841eb22ddf930b5da92b5ab0c0dd9a 244 SUPERFAMILY SSF50891 90 220 3.38E-48 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily AP3564_03840 fa841eb22ddf930b5da92b5ab0c0dd9a 244 SUPERFAMILY SSF160467 5 93 7.85E-18 T 13-10-2018 AP3564_16215 839480ca4cc73bda9bf0fecc24aa41e4 98 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 11 98 1.7E-29 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 AP3564_16215 839480ca4cc73bda9bf0fecc24aa41e4 98 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 83 96 1.9E-17 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 AP3564_16215 839480ca4cc73bda9bf0fecc24aa41e4 98 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 62 78 1.9E-17 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 AP3564_16215 839480ca4cc73bda9bf0fecc24aa41e4 98 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 28 44 1.9E-17 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 AP3564_16215 839480ca4cc73bda9bf0fecc24aa41e4 98 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 3 98 18.491 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 AP3564_16215 839480ca4cc73bda9bf0fecc24aa41e4 98 Pfam PF02049 Flagellar hook-basal body complex protein FliE 16 98 1.9E-30 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 AP3564_09615 6c05834a363dc599dd8e0cabfc489d05 129 Gene3D G3DSA:1.10.10.10 8 128 9.3E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_09615 6c05834a363dc599dd8e0cabfc489d05 129 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 75 3.9E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_09615 6c05834a363dc599dd8e0cabfc489d05 129 SUPERFAMILY SSF46785 5 78 3.48E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_09615 6c05834a363dc599dd8e0cabfc489d05 129 SMART SM00345 16 75 9.4E-15 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_16590 7131199a71eff06325a933e9c89c70dc 169 Pfam PF05103 DivIVA protein 3 133 2.7E-52 T 13-10-2018 IPR007793 DivIVA family AP3564_16590 7131199a71eff06325a933e9c89c70dc 169 TIGRFAM TIGR03544 DivI1A_domain: DivIVA domain 3 36 1.5E-18 T 13-10-2018 IPR019933 DivIVA domain AP3564_08360 355e2a11c80c3755e4e25c0397ee93d6 133 PIRSF PIRSF039090 1 129 3.2E-39 T 13-10-2018 IPR003713 Flagellar protein FliS GO:0044780 AP3564_08360 355e2a11c80c3755e4e25c0397ee93d6 133 TIGRFAM TIGR00208 fliS: flagellar protein FliS 1 120 7.0E-45 T 13-10-2018 IPR003713 Flagellar protein FliS GO:0044780 AP3564_08360 355e2a11c80c3755e4e25c0397ee93d6 133 SUPERFAMILY SSF101116 4 123 2.62E-42 T 13-10-2018 IPR036584 Flagellar protein FliS superfamily GO:0044780 AP3564_08360 355e2a11c80c3755e4e25c0397ee93d6 133 Pfam PF02561 Flagellar protein FliS 7 118 1.1E-42 T 13-10-2018 IPR003713 Flagellar protein FliS GO:0044780 AP3564_08360 355e2a11c80c3755e4e25c0397ee93d6 133 Gene3D G3DSA:1.20.120.340 1 122 5.4E-44 T 13-10-2018 AP3564_16185 1cc418744984c10b39a6e5e0292090a2 206 Gene3D G3DSA:1.25.60.10 48 181 3.8E-6 T 13-10-2018 IPR038076 MgtE, N-terminal domain superfamily AP3564_16185 1cc418744984c10b39a6e5e0292090a2 206 Pfam PF03448 MgtE intracellular N domain 124 181 1.9E-8 T 13-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain AP3564_16185 1cc418744984c10b39a6e5e0292090a2 206 SUPERFAMILY SSF158791 86 181 5.49E-10 T 13-10-2018 AP3564_13855 37b0481898cf641a71247aa3c7df82d6 93 Pfam PF01527 Transposase 6 80 8.0E-15 T 13-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AP3564_13855 37b0481898cf641a71247aa3c7df82d6 93 SUPERFAMILY SSF46689 7 92 1.09E-20 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_13855 37b0481898cf641a71247aa3c7df82d6 93 Gene3D G3DSA:1.10.10.60 12 92 3.4E-10 T 13-10-2018 AP3564_15575 beb1b58ee1e14574f2e7e47d58a9aec5 231 SUPERFAMILY SSF52540 4 225 1.18E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_15575 beb1b58ee1e14574f2e7e47d58a9aec5 231 SMART SM00382 33 224 4.2E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_15575 beb1b58ee1e14574f2e7e47d58a9aec5 231 Gene3D G3DSA:3.40.50.300 2 230 8.2E-67 T 13-10-2018 AP3564_15575 beb1b58ee1e14574f2e7e47d58a9aec5 231 Pfam PF00005 ABC transporter 24 174 1.0E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_15575 beb1b58ee1e14574f2e7e47d58a9aec5 231 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_05145 7c7ced8647e37d9bbf455a6c9654c36a 124 Pfam PF01042 Endoribonuclease L-PSP 6 122 3.9E-48 T 13-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 AP3564_05145 7c7ced8647e37d9bbf455a6c9654c36a 124 SUPERFAMILY SSF55298 2 123 6.91E-49 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AP3564_05145 7c7ced8647e37d9bbf455a6c9654c36a 124 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 1 122 1.1E-56 T 13-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 AP3564_05145 7c7ced8647e37d9bbf455a6c9654c36a 124 Gene3D G3DSA:3.30.1330.40 1 124 4.6E-57 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AP3564_05145 7c7ced8647e37d9bbf455a6c9654c36a 124 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 99 117 - T 13-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 AP3564_18010 dfb918fe6e5239048f66e72c1d5002de 278 Hamap MF_02118 Octanoyltransferase LipM [lipM]. 3 278 66.307 T 13-10-2018 IPR024898 Octanoyltransferase LipM GO:0009107|GO:0009249|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 AP3564_18010 dfb918fe6e5239048f66e72c1d5002de 278 Pfam PF03099 Biotin/lipoate A/B protein ligase family 52 189 1.1E-26 T 13-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 AP3564_18010 dfb918fe6e5239048f66e72c1d5002de 278 SUPERFAMILY SSF55681 4 276 2.15E-68 T 13-10-2018 AP3564_18010 dfb918fe6e5239048f66e72c1d5002de 278 Gene3D G3DSA:3.30.930.10 7 278 3.3E-69 T 13-10-2018 AP3564_17050 0ab829297a933581104adf53cc586388 294 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 14 221 1.8E-65 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT AP3564_17050 0ab829297a933581104adf53cc586388 294 Gene3D G3DSA:3.30.70.120 197 273 5.1E-29 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal AP3564_17050 0ab829297a933581104adf53cc586388 294 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 226 280 1.1E-22 T 13-10-2018 IPR019264 Domain of unknown function DUF2179 AP3564_17050 0ab829297a933581104adf53cc586388 294 PIRSF PIRSF006483 6 288 2.7E-98 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT AP3564_09525 d18c79c9c1416bfa721ed0ec6a897a29 268 SUPERFAMILY SSF161098 70 255 1.31E-30 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_09525 d18c79c9c1416bfa721ed0ec6a897a29 268 Gene3D G3DSA:1.10.3720.10 71 266 2.9E-23 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_09525 d18c79c9c1416bfa721ed0ec6a897a29 268 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 258 2.4E-23 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AP3564_00230 1e6334d1087cc27b123792613ea559f4 310 Gene3D G3DSA:3.20.20.220 5 299 2.4E-46 T 13-10-2018 AP3564_00230 1e6334d1087cc27b123792613ea559f4 310 Pfam PF02219 Methylenetetrahydrofolate reductase 10 281 1.2E-30 T 13-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 AP3564_00230 1e6334d1087cc27b123792613ea559f4 310 SUPERFAMILY SSF51730 8 287 2.16E-52 T 13-10-2018 IPR029041 FAD-linked oxidoreductase-like AP3564_01650 25e6cf2bcd0f68095969a5023796e4fc 260 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 140 160 - T 13-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site AP3564_01650 25e6cf2bcd0f68095969a5023796e4fc 260 Gene3D G3DSA:3.60.110.10 1 258 8.1E-97 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AP3564_01650 25e6cf2bcd0f68095969a5023796e4fc 260 Pfam PF00795 Carbon-nitrogen hydrolase 2 244 3.7E-53 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 AP3564_01650 25e6cf2bcd0f68095969a5023796e4fc 260 SUPERFAMILY SSF56317 1 258 6.67E-77 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AP3564_03180 9e8a1376d90ffd243866fbaaa39dfabe 337 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 8.4E-20 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AP3564_03180 9e8a1376d90ffd243866fbaaa39dfabe 337 SUPERFAMILY SSF53822 61 330 4.89E-75 T 13-10-2018 IPR028082 Periplasmic binding protein-like I AP3564_03180 9e8a1376d90ffd243866fbaaa39dfabe 337 SUPERFAMILY SSF47413 2 59 4.56E-19 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AP3564_03180 9e8a1376d90ffd243866fbaaa39dfabe 337 SMART SM00354 1 71 5.4E-36 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AP3564_03180 9e8a1376d90ffd243866fbaaa39dfabe 337 Pfam PF13377 Periplasmic binding protein-like domain 168 329 3.1E-37 T 13-10-2018 AP3564_03180 9e8a1376d90ffd243866fbaaa39dfabe 337 Gene3D G3DSA:3.40.50.2300 62 305 2.1E-71 T 13-10-2018 AP3564_03180 9e8a1376d90ffd243866fbaaa39dfabe 337 Gene3D G3DSA:1.10.260.40 3 59 1.5E-24 T 13-10-2018 AP3564_03180 9e8a1376d90ffd243866fbaaa39dfabe 337 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 2.3E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AP3564_03180 9e8a1376d90ffd243866fbaaa39dfabe 337 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 2.3E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AP3564_03180 9e8a1376d90ffd243866fbaaa39dfabe 337 Gene3D G3DSA:3.40.50.2300 159 288 2.1E-71 T 13-10-2018 AP3564_18695 9ad9514883633b0626ac7df4d726d78b 255 Pfam PF00899 ThiF family 6 213 6.1E-40 T 13-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AP3564_18695 9ad9514883633b0626ac7df4d726d78b 255 Gene3D G3DSA:3.40.50.720 1 254 5.1E-83 T 13-10-2018 AP3564_18695 9ad9514883633b0626ac7df4d726d78b 255 SUPERFAMILY SSF69572 4 245 4.58E-64 T 13-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 AP3564_16145 c49b62dd8a21920a05532f8c35b1ca37 120 SUPERFAMILY SSF52172 3 119 1.99E-42 T 13-10-2018 IPR011006 CheY-like superfamily AP3564_16145 c49b62dd8a21920a05532f8c35b1ca37 120 Gene3D G3DSA:3.40.50.2300 2 120 7.0E-42 T 13-10-2018 AP3564_16145 c49b62dd8a21920a05532f8c35b1ca37 120 SMART SM00448 3 115 2.3E-42 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_16145 c49b62dd8a21920a05532f8c35b1ca37 120 Pfam PF00072 Response regulator receiver domain 5 116 5.7E-35 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_18060 dabf916d80c374d07efdad76262b7acb 108 ProDom PD073895 COMPETENCE COMGE LATE MACHINERY MEMBRANE OPERON DNA THE METHYLATION PART 1 102 4.0E-8 T 13-10-2018 IPR020488 Competence operon G, ComGE AP3564_10220 72e37b880925ca0576839f9a50570145 67 Gene3D G3DSA:3.10.20.30 1 67 8.9E-22 T 13-10-2018 IPR012675 Beta-grasp domain superfamily AP3564_10220 72e37b880925ca0576839f9a50570145 67 Pfam PF02597 ThiS family 4 67 1.7E-12 T 13-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 AP3564_10220 72e37b880925ca0576839f9a50570145 67 SUPERFAMILY SSF54285 2 66 1.55E-18 T 13-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp AP3564_10220 72e37b880925ca0576839f9a50570145 67 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 4 67 1.8E-21 T 13-10-2018 IPR010035 ThiS, thiamine-biosynthesis AP3564_09900 a3e9df37cdac8bcd2b2dec58755397d9 164 SUPERFAMILY SSF53850 49 164 1.33E-25 T 13-10-2018 AP3564_09900 a3e9df37cdac8bcd2b2dec58755397d9 164 Gene3D G3DSA:3.40.190.10 130 164 2.4E-45 T 13-10-2018 AP3564_09900 a3e9df37cdac8bcd2b2dec58755397d9 164 Gene3D G3DSA:3.40.190.10 51 129 2.4E-45 T 13-10-2018 AP3564_09900 a3e9df37cdac8bcd2b2dec58755397d9 164 Pfam PF09084 NMT1/THI5 like 76 159 2.1E-5 T 13-10-2018 IPR015168 SsuA/THI5-like AP3564_02865 e61022011c35be05a2f2c621e3716e38 145 SUPERFAMILY SSF46785 2 133 3.15E-41 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_02865 e61022011c35be05a2f2c621e3716e38 145 Pfam PF02082 Transcriptional regulator 1 82 2.0E-26 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type AP3564_02865 e61022011c35be05a2f2c621e3716e38 145 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 13-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site AP3564_02865 e61022011c35be05a2f2c621e3716e38 145 Gene3D G3DSA:1.10.10.10 1 143 5.6E-42 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_02865 e61022011c35be05a2f2c621e3716e38 145 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 132 5.4E-43 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type AP3564_12185 2ad82aef6aad3c3491033116c2eb04ea 289 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 183 278 1.6E-12 T 13-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal AP3564_12185 2ad82aef6aad3c3491033116c2eb04ea 289 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 9 173 8.9E-31 T 13-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 AP3564_12185 2ad82aef6aad3c3491033116c2eb04ea 289 SMART SM01092 182 285 4.2E-11 T 13-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal AP3564_12185 2ad82aef6aad3c3491033116c2eb04ea 289 SUPERFAMILY SSF55447 182 281 1.57E-18 T 13-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily AP3564_12185 2ad82aef6aad3c3491033116c2eb04ea 289 Gene3D G3DSA:3.30.465.10 7 174 2.1E-37 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AP3564_12185 2ad82aef6aad3c3491033116c2eb04ea 289 SUPERFAMILY SSF56176 9 173 3.05E-29 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AP3564_12185 2ad82aef6aad3c3491033116c2eb04ea 289 Gene3D G3DSA:3.30.390.50 180 287 9.1E-19 T 13-10-2018 AP3564_06955 61cac875761e4bb0aebfc60269ebcf19 159 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 24 155 2.8E-44 T 13-10-2018 IPR006464 N-acetyltransferase RimI/Ard1 GO:0006474|GO:0016407 AP3564_06955 61cac875761e4bb0aebfc60269ebcf19 159 PIRSF PIRSF037663 15 158 5.2E-11 T 13-10-2018 IPR017255 Acetyltransferase, GNAT, predicted AP3564_06955 61cac875761e4bb0aebfc60269ebcf19 159 Pfam PF00583 Acetyltransferase (GNAT) family 26 135 1.6E-21 T 13-10-2018 IPR000182 GNAT domain AP3564_06955 61cac875761e4bb0aebfc60269ebcf19 159 SUPERFAMILY SSF55729 15 159 2.06E-35 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase AP3564_06955 61cac875761e4bb0aebfc60269ebcf19 159 Gene3D G3DSA:3.40.630.30 15 159 8.8E-46 T 13-10-2018 AP3564_19100 3a28ca6849d04046283e133b47f618be 205 Hamap MF_01405 dITP/XTP pyrophosphatase. 2 193 49.379 T 13-10-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.66 AP3564_19100 3a28ca6849d04046283e133b47f618be 205 SUPERFAMILY SSF52972 1 191 4.71E-72 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AP3564_19100 3a28ca6849d04046283e133b47f618be 205 Pfam PF01725 Ham1 family 4 188 2.3E-63 T 13-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 AP3564_19100 3a28ca6849d04046283e133b47f618be 205 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 3 190 9.2E-72 T 13-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 AP3564_19100 3a28ca6849d04046283e133b47f618be 205 Gene3D G3DSA:3.90.950.10 1 193 1.2E-80 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AP3564_15165 aef3ebbc0dbfcedb2b8ac69bdd457365 67 Pfam PF12784 PD-(D/E)XK nuclease family transposase 2 50 3.8E-9 T 13-10-2018 AP3564_13045 f9bfc47d9d8fe67092e21f513a02154d 488 Gene3D G3DSA:1.20.1740.10 19 482 1.2E-61 T 13-10-2018 AP3564_13045 f9bfc47d9d8fe67092e21f513a02154d 488 Pfam PF00324 Amino acid permease 29 479 1.7E-139 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 AP3564_13045 f9bfc47d9d8fe67092e21f513a02154d 488 ProSitePatterns PS00218 Amino acid permeases signature. 54 85 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AP3564_13045 f9bfc47d9d8fe67092e21f513a02154d 488 PIRSF PIRSF006060 2 483 4.9E-90 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 AP3564_11435 a544d2b8ce4a5e4c63298fa1ad71794c 322 Gene3D G3DSA:3.40.50.1980 186 318 4.8E-47 T 13-10-2018 AP3564_11435 a544d2b8ce4a5e4c63298fa1ad71794c 322 Gene3D G3DSA:3.40.50.1980 23 180 2.7E-40 T 13-10-2018 AP3564_11435 a544d2b8ce4a5e4c63298fa1ad71794c 322 Pfam PF01497 Periplasmic binding protein 64 295 3.4E-44 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain AP3564_11435 a544d2b8ce4a5e4c63298fa1ad71794c 322 SUPERFAMILY SSF53807 43 317 3.81E-72 T 13-10-2018 AP3564_06115 93a534fae346aeae47e4814da0f320d7 115 Pfam PF00890 FAD binding domain 21 112 1.8E-12 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 AP3564_06115 93a534fae346aeae47e4814da0f320d7 115 Gene3D G3DSA:3.50.50.60 10 115 1.1E-20 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_06115 93a534fae346aeae47e4814da0f320d7 115 SUPERFAMILY SSF51905 16 111 3.24E-16 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_07220 344882fa03207727cf4592ae1a91e5e4 253 SUPERFAMILY SSF88713 3 251 6.37E-104 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AP3564_07220 344882fa03207727cf4592ae1a91e5e4 253 Pfam PF03746 LamB/YcsF family 4 241 4.4E-107 T 13-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 AP3564_07220 344882fa03207727cf4592ae1a91e5e4 253 Gene3D G3DSA:3.20.20.370 2 253 8.8E-108 T 13-10-2018 AP3564_07220 344882fa03207727cf4592ae1a91e5e4 253 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 2 246 49.07 T 13-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 AP3564_05125 e99cc3ffe6298efcfbe1b27a2027daaa 88 PIRSF PIRSF037257 1 85 3.4E-37 T 13-10-2018 IPR009366 Protein Veg GO:0006355 AP3564_05125 e99cc3ffe6298efcfbe1b27a2027daaa 88 Gene3D G3DSA:2.30.30.100 1 78 3.5E-27 T 13-10-2018 AP3564_05125 e99cc3ffe6298efcfbe1b27a2027daaa 88 Pfam PF06257 Biofilm formation stimulator VEG 4 74 6.4E-31 T 13-10-2018 IPR009366 Protein Veg GO:0006355 AP3564_02880 05f36468045ace76631d27f76e9224cf 229 Pfam PF03741 Integral membrane protein TerC family 14 182 8.3E-45 T 13-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 AP3564_02880 05f36468045ace76631d27f76e9224cf 229 TIGRFAM TIGR03717 R_switched_YjbE: integral membrane protein, YjbE family 11 183 1.5E-67 T 13-10-2018 IPR022301 Integral membrane protein YjbE AP3564_04485 68d71ccf6017ac44e761d72e4504b22e 136 SUPERFAMILY SSF46785 1 133 1.15E-32 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_04485 68d71ccf6017ac44e761d72e4504b22e 136 Pfam PF02082 Transcriptional regulator 1 80 7.0E-22 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type AP3564_04485 68d71ccf6017ac44e761d72e4504b22e 136 Gene3D G3DSA:1.10.10.10 1 136 5.0E-56 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_02645 ca331d0c622c7ddea35f553df4332afe 585 Pfam PF03239 Iron permease FTR1 family 326 527 1.5E-24 T 13-10-2018 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0016020|GO:0033573|GO:0034755 AP3564_13985 68254d96ef6023285766ab8bb7be400b 121 Gene3D G3DSA:3.40.250.10 26 121 3.2E-31 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily AP3564_13985 68254d96ef6023285766ab8bb7be400b 121 SMART SM00450 31 121 9.7E-23 T 13-10-2018 IPR001763 Rhodanese-like domain AP3564_13985 68254d96ef6023285766ab8bb7be400b 121 SUPERFAMILY SSF52821 6 120 1.44E-35 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily AP3564_13985 68254d96ef6023285766ab8bb7be400b 121 Pfam PF00581 Rhodanese-like domain 32 120 1.1E-18 T 13-10-2018 IPR001763 Rhodanese-like domain AP3564_13190 b526b85d09b84a332403eceec0fa3695 286 Pfam PF07870 Protein of unknown function (DUF1657) 237 282 3.3E-14 T 13-10-2018 IPR012452 Protein of unknown function DUF1657 AP3564_13190 b526b85d09b84a332403eceec0fa3695 286 Gene3D G3DSA:3.30.240.20 170 229 2.6E-17 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily AP3564_13190 b526b85d09b84a332403eceec0fa3695 286 Gene3D G3DSA:3.30.240.20 80 154 4.8E-24 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily AP3564_13190 b526b85d09b84a332403eceec0fa3695 286 Pfam PF04239 Protein of unknown function (DUF421) 88 204 6.4E-34 T 13-10-2018 IPR007353 Protein of unknown function DUF421 AP3564_01205 b824159693cbb74dd0589ec02713095f 96 Hamap MF_01471 CRISPR-associated endoribonuclease Cas2 [cas2]. 1 95 16.201 T 13-10-2018 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 AP3564_01205 b824159693cbb74dd0589ec02713095f 96 TIGRFAM TIGR01573 cas2: CRISPR-associated endonuclease Cas2 2 96 3.0E-21 T 13-10-2018 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 AP3564_01205 b824159693cbb74dd0589ec02713095f 96 Pfam PF09827 CRISPR associated protein Cas2 2 78 1.5E-25 T 13-10-2018 IPR019199 Virulence-associated protein D / CRISPR associated protein Cas2 AP3564_01205 b824159693cbb74dd0589ec02713095f 96 PIRSF PIRSF032582 1 96 3.8E-40 T 13-10-2018 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 AP3564_01205 b824159693cbb74dd0589ec02713095f 96 SUPERFAMILY SSF143430 2 89 6.15E-28 T 13-10-2018 AP3564_01205 b824159693cbb74dd0589ec02713095f 96 Gene3D G3DSA:3.30.70.240 1 96 2.1E-37 T 13-10-2018 AP3564_06455 d913e20e7722dcac83afba25b974a5cf 55 TIGRFAM TIGR04404 RiPP_SkfA: sporulation killing factor 5 54 3.0E-28 T 13-10-2018 IPR030919 Sporulation killing factor SkfA AP3564_05080 6355b0b4729b53c312aaef1662096ca5 245 SUPERFAMILY SSF53335 12 199 3.35E-33 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_05080 6355b0b4729b53c312aaef1662096ca5 245 Pfam PF05175 Methyltransferase small domain 19 132 1.0E-10 T 13-10-2018 IPR007848 Methyltransferase small domain GO:0008168 AP3564_05080 6355b0b4729b53c312aaef1662096ca5 245 Gene3D G3DSA:3.40.50.150 8 245 1.9E-71 T 13-10-2018 AP3564_07780 1ca1c1642c922c8fc80e7f8f4e0e9159 128 SUPERFAMILY SSF50118 4 115 3.05E-27 T 13-10-2018 AP3564_07780 1ca1c1642c922c8fc80e7f8f4e0e9159 128 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 7 116 1.5E-20 T 13-10-2018 IPR003477 mRNA interferase PemK-like GO:0003677 AP3564_07780 1ca1c1642c922c8fc80e7f8f4e0e9159 128 Gene3D G3DSA:2.30.30.110 2 125 1.0E-35 T 13-10-2018 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor AP3564_06250 e2a0d22c5163750984fe7181d553e17b 361 Gene3D G3DSA:3.20.20.70 3 356 8.5E-122 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_06250 e2a0d22c5163750984fe7181d553e17b 361 Pfam PF03060 Nitronate monooxygenase 6 346 7.7E-102 T 13-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 AP3564_06250 e2a0d22c5163750984fe7181d553e17b 361 SUPERFAMILY SSF51412 4 351 2.9E-68 T 13-10-2018 AP3564_07620 f5998851425c8d968f28d1c4e6355647 375 Gene3D G3DSA:3.40.50.2000 180 355 2.4E-37 T 13-10-2018 AP3564_07620 f5998851425c8d968f28d1c4e6355647 375 Pfam PF00534 Glycosyl transferases group 1 180 339 1.5E-33 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 AP3564_07620 f5998851425c8d968f28d1c4e6355647 375 Gene3D G3DSA:3.40.50.2000 1 177 2.6E-16 T 13-10-2018 AP3564_07620 f5998851425c8d968f28d1c4e6355647 375 Pfam PF13439 Glycosyltransferase Family 4 33 157 8.5E-9 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AP3564_07620 f5998851425c8d968f28d1c4e6355647 375 SUPERFAMILY SSF53756 44 364 1.08E-62 T 13-10-2018 AP3564_17885 5290ec6141a8603c216588936001a77d 205 Pfam PF09581 Stage III sporulation protein AF (Spore_III_AF) 12 196 1.1E-33 T 13-10-2018 IPR014245 Sporulation stage III, protein AF AP3564_17885 5290ec6141a8603c216588936001a77d 205 TIGRFAM TIGR02896 spore_III_AF: stage III sporulation protein AF 3 111 9.5E-32 T 13-10-2018 IPR014245 Sporulation stage III, protein AF AP3564_15385 e6921ed58e468dcd3bf822590b75820c 556 Pfam PF13361 UvrD-like helicase C-terminal domain 329 414 7.4E-8 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AP3564_15385 e6921ed58e468dcd3bf822590b75820c 556 Gene3D G3DSA:3.40.50.300 34 193 1.4E-17 T 13-10-2018 AP3564_15385 e6921ed58e468dcd3bf822590b75820c 556 Gene3D G3DSA:3.40.50.300 208 322 2.7E-12 T 13-10-2018 AP3564_15385 e6921ed58e468dcd3bf822590b75820c 556 Gene3D G3DSA:3.40.50.300 330 547 7.5E-27 T 13-10-2018 AP3564_15385 e6921ed58e468dcd3bf822590b75820c 556 Pfam PF13361 UvrD-like helicase C-terminal domain 453 525 9.6E-13 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AP3564_15385 e6921ed58e468dcd3bf822590b75820c 556 SUPERFAMILY SSF52540 35 544 1.07E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_15385 e6921ed58e468dcd3bf822590b75820c 556 Pfam PF00580 UvrD/REP helicase N-terminal domain 37 308 2.6E-21 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 AP3564_18380 62812a22a0c46a0e46ed761b536fcae0 320 Gene3D G3DSA:3.40.50.300 109 316 3.1E-74 T 13-10-2018 AP3564_18380 62812a22a0c46a0e46ed761b536fcae0 320 SUPERFAMILY SSF52540 61 280 6.64E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_18380 62812a22a0c46a0e46ed761b536fcae0 320 Pfam PF02562 PhoH-like protein 113 316 8.9E-95 T 13-10-2018 IPR003714 PhoH-like protein GO:0005524 AP3564_17780 3befb0dfcf308be7f79c01f31e240a54 327 Gene3D G3DSA:3.40.50.920 193 327 3.0E-42 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AP3564_17780 3befb0dfcf308be7f79c01f31e240a54 327 Pfam PF02780 Transketolase, C-terminal domain 194 317 1.3E-39 T 13-10-2018 IPR033248 Transketolase, C-terminal domain AP3564_17780 3befb0dfcf308be7f79c01f31e240a54 327 Gene3D G3DSA:3.40.50.970 1 192 2.7E-92 T 13-10-2018 AP3564_17780 3befb0dfcf308be7f79c01f31e240a54 327 SMART SM00861 4 179 4.7E-71 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AP3564_17780 3befb0dfcf308be7f79c01f31e240a54 327 Pfam PF02779 Transketolase, pyrimidine binding domain 4 178 3.1E-51 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AP3564_17780 3befb0dfcf308be7f79c01f31e240a54 327 SUPERFAMILY SSF52922 188 325 1.96E-40 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AP3564_17780 3befb0dfcf308be7f79c01f31e240a54 327 SUPERFAMILY SSF52518 3 193 4.52E-73 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold AP3564_00770 7ac6f93fc5b3c24174694a87dcd722a2 193 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 134 157 - T 13-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AP3564_00770 7ac6f93fc5b3c24174694a87dcd722a2 193 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 3 188 32.858 T 13-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 AP3564_00770 7ac6f93fc5b3c24174694a87dcd722a2 193 SUPERFAMILY SSF53328 2 187 1.57E-65 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AP3564_00770 7ac6f93fc5b3c24174694a87dcd722a2 193 Gene3D G3DSA:3.40.50.170 1 193 6.5E-81 T 13-10-2018 AP3564_00770 7ac6f93fc5b3c24174694a87dcd722a2 193 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 2 189 1.1E-77 T 13-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 AP3564_00770 7ac6f93fc5b3c24174694a87dcd722a2 193 Pfam PF00551 Formyl transferase 2 182 1.8E-68 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AP3564_07100 c9520a150468ac3e1f1547ac16716cc7 216 Gene3D G3DSA:2.60.120.10 5 173 1.3E-28 T 13-10-2018 IPR014710 RmlC-like jelly roll fold AP3564_07100 c9520a150468ac3e1f1547ac16716cc7 216 Pfam PF00190 Cupin 38 152 2.7E-13 T 13-10-2018 IPR006045 Cupin 1 GO:0045735 AP3564_07100 c9520a150468ac3e1f1547ac16716cc7 216 SMART SM00835 16 158 4.0E-19 T 13-10-2018 IPR006045 Cupin 1 GO:0045735 AP3564_07100 c9520a150468ac3e1f1547ac16716cc7 216 SUPERFAMILY SSF51182 14 172 2.9E-29 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily AP3564_08725 e3b5a14acae91d68d3965e4f9b3ea2c8 562 Pfam PF13751 Transposase DDE domain 371 495 3.1E-33 T 13-10-2018 IPR025668 Transposase DDE domain AP3564_08725 e3b5a14acae91d68d3965e4f9b3ea2c8 562 Pfam PF05598 Transposase domain (DUF772) 21 89 2.9E-16 T 13-10-2018 IPR008490 Transposase InsH, N-terminal AP3564_03080 4b788c3210f4cc0d09faa72ff39f257c 992 Pfam PF13514 AAA domain 1 205 1.8E-28 T 13-10-2018 IPR038734 Uncharacterized protein YhaN, AAA domain AP3564_03080 4b788c3210f4cc0d09faa72ff39f257c 992 Gene3D G3DSA:3.40.50.300 740 991 1.2E-13 T 13-10-2018 AP3564_03080 4b788c3210f4cc0d09faa72ff39f257c 992 SUPERFAMILY SSF52540 1 986 2.66E-14 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_03080 4b788c3210f4cc0d09faa72ff39f257c 992 Gene3D G3DSA:3.40.50.300 1 370 3.2E-20 T 13-10-2018 AP3564_04310 cd51848a1de79f8d7e5d687ecf6d978f 217 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 96 109 1.9E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AP3564_04310 cd51848a1de79f8d7e5d687ecf6d978f 217 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 145 165 1.9E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AP3564_04310 cd51848a1de79f8d7e5d687ecf6d978f 217 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 2 13 1.9E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AP3564_04310 cd51848a1de79f8d7e5d687ecf6d978f 217 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 127 143 1.9E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AP3564_04310 cd51848a1de79f8d7e5d687ecf6d978f 217 Gene3D G3DSA:1.10.150.240 15 83 7.9E-53 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 AP3564_04310 cd51848a1de79f8d7e5d687ecf6d978f 217 Gene3D G3DSA:3.40.50.1000 3 201 7.9E-53 T 13-10-2018 IPR023214 HAD superfamily AP3564_04310 cd51848a1de79f8d7e5d687ecf6d978f 217 SUPERFAMILY SSF56784 2 212 7.47E-48 T 13-10-2018 IPR036412 HAD-like superfamily AP3564_04310 cd51848a1de79f8d7e5d687ecf6d978f 217 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 83 183 8.6E-14 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AP3564_04310 cd51848a1de79f8d7e5d687ecf6d978f 217 Pfam PF13419 Haloacid dehalogenase-like hydrolase 5 183 1.0E-39 T 13-10-2018 AP3564_03245 84df0905e79c6ef45e4f6dbdba602bb7 143 Pfam PF06103 Bacterial protein of unknown function (DUF948) 9 94 2.2E-28 T 13-10-2018 IPR009293 Uncharacterised protein family UPF0478 AP3564_03245 84df0905e79c6ef45e4f6dbdba602bb7 143 SUPERFAMILY SSF58104 27 137 1.83E-6 T 13-10-2018 AP3564_03245 84df0905e79c6ef45e4f6dbdba602bb7 143 Gene3D G3DSA:1.10.287.950 17 140 1.3E-6 T 13-10-2018 AP3564_07830 8372df31f9c306d116c7bf667ea61654 212 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 11 205 2.6E-40 T 13-10-2018 IPR006214 Bax inhibitor 1-related AP3564_03875 dd8fe6ce341fc2971f230fa6843cb38a 76 Pfam PF06612 Protein of unknown function (DUF1146) 16 63 1.0E-17 T 13-10-2018 IPR009526 Protein of unknown function DUF1146 AP3564_03875 dd8fe6ce341fc2971f230fa6843cb38a 76 TIGRFAM TIGR02327 int_mem_ywzB: conserved hypothetical integral membrane protein 9 76 4.9E-18 T 13-10-2018 IPR009526 Protein of unknown function DUF1146 AP3564_13250 b405510e3941655afee79523ac8044a0 446 TIGRFAM TIGR00797 matE: MATE efflux family protein 21 411 3.5E-78 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AP3564_13250 b405510e3941655afee79523ac8044a0 446 Pfam PF01554 MatE 21 182 1.6E-32 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AP3564_13250 b405510e3941655afee79523ac8044a0 446 Pfam PF01554 MatE 241 402 5.6E-35 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AP3564_13250 b405510e3941655afee79523ac8044a0 446 PIRSF PIRSF006603 1 445 1.8E-131 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AP3564_14360 7c2154a30b7ba109838f436c21054505 140 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 7 135 4.6E-24 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I AP3564_14360 7c2154a30b7ba109838f436c21054505 140 SUPERFAMILY SSF52788 7 137 2.75E-47 T 13-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily AP3564_14360 7c2154a30b7ba109838f436c21054505 140 Gene3D G3DSA:3.40.50.2300 2 140 7.4E-61 T 13-10-2018 AP3564_14360 7c2154a30b7ba109838f436c21054505 140 SMART SM00226 5 138 2.1E-64 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I AP3564_14360 7c2154a30b7ba109838f436c21054505 140 TIGRFAM TIGR02691 arsC_pI258_fam: arsenate reductase (thioredoxin) 7 135 4.6E-74 T 13-10-2018 IPR014064 Arsenate reductase ArsC GO:0004725|GO:0030612|GO:0046685 AP3564_14360 7c2154a30b7ba109838f436c21054505 140 Hamap MF_01624 Arsenate reductase [arsC]. 2 138 47.301 T 13-10-2018 IPR014064 Arsenate reductase ArsC GO:0004725|GO:0030612|GO:0046685 AP3564_00450 fd367178798214a8a8da75ec444926e2 266 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 147 175 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AP3564_00450 fd367178798214a8a8da75ec444926e2 266 SUPERFAMILY SSF51735 9 263 3.77E-74 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_00450 fd367178798214a8a8da75ec444926e2 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 2.0E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_00450 fd367178798214a8a8da75ec444926e2 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 2.0E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_00450 fd367178798214a8a8da75ec444926e2 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 2.0E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_00450 fd367178798214a8a8da75ec444926e2 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 2.0E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_00450 fd367178798214a8a8da75ec444926e2 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 2.0E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_00450 fd367178798214a8a8da75ec444926e2 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 227 247 2.0E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_00450 fd367178798214a8a8da75ec444926e2 266 Gene3D G3DSA:3.40.50.720 3 265 3.2E-76 T 13-10-2018 AP3564_00450 fd367178798214a8a8da75ec444926e2 266 Pfam PF00106 short chain dehydrogenase 11 202 2.5E-54 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_00450 fd367178798214a8a8da75ec444926e2 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 9.0E-14 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_00450 fd367178798214a8a8da75ec444926e2 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 9.0E-14 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_00450 fd367178798214a8a8da75ec444926e2 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 9.0E-14 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_07460 b0fbf8a0dca286ea3bbefe88e4fd4254 133 Pfam PF06923 Glucitol operon activator protein (GutM) 2 96 3.8E-22 T 13-10-2018 IPR009693 Glucitol operon activator AP3564_16925 8f081f3e3c0ad4f79dfa8c037c222d95 155 Pfam PF00011 Hsp20/alpha crystallin family 58 151 8.2E-13 T 13-10-2018 IPR002068 Alpha crystallin/Hsp20 domain AP3564_16925 8f081f3e3c0ad4f79dfa8c037c222d95 155 Gene3D G3DSA:2.60.40.790 12 155 1.8E-23 T 13-10-2018 IPR008978 HSP20-like chaperone AP3564_16925 8f081f3e3c0ad4f79dfa8c037c222d95 155 SUPERFAMILY SSF49764 37 150 6.98E-21 T 13-10-2018 IPR008978 HSP20-like chaperone AP3564_00605 eba778c8d154828fd3bdd3dbee24610e 244 TIGRFAM TIGR02303 HpaG-C-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit 2 243 3.2E-118 T 13-10-2018 IPR012684 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit GO:0008704|GO:0018800|GO:1901023 KEGG: 00350+5.3.3.10+4.1.1.68 AP3564_00605 eba778c8d154828fd3bdd3dbee24610e 244 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 46 243 1.7E-60 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 AP3564_00605 eba778c8d154828fd3bdd3dbee24610e 244 SUPERFAMILY SSF56529 36 243 1.27E-72 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AP3564_00605 eba778c8d154828fd3bdd3dbee24610e 244 Gene3D G3DSA:3.90.850.10 37 244 4.9E-75 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AP3564_17970 743055dde485dc4d8f10f46b8fdd79d0 193 Gene3D G3DSA:1.10.357.10 2 188 5.9E-19 T 13-10-2018 AP3564_17970 743055dde485dc4d8f10f46b8fdd79d0 193 SUPERFAMILY SSF46689 4 62 2.39E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_17970 743055dde485dc4d8f10f46b8fdd79d0 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 8 21 6.6E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_17970 743055dde485dc4d8f10f46b8fdd79d0 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 6.6E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_17970 743055dde485dc4d8f10f46b8fdd79d0 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 8 51 3.2E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_06245 b158260f78ab84ed241a70e691388e8f 280 Pfam PF03466 LysR substrate binding domain 89 278 1.2E-33 T 13-10-2018 IPR005119 LysR, substrate-binding AP3564_06245 b158260f78ab84ed241a70e691388e8f 280 SUPERFAMILY SSF53850 90 278 7.12E-29 T 13-10-2018 AP3564_06245 b158260f78ab84ed241a70e691388e8f 280 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 2.1E-16 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_06245 b158260f78ab84ed241a70e691388e8f 280 Gene3D G3DSA:3.40.190.290 85 279 1.9E-37 T 13-10-2018 AP3564_06245 b158260f78ab84ed241a70e691388e8f 280 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.1E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_06245 b158260f78ab84ed241a70e691388e8f 280 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.1E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_06245 b158260f78ab84ed241a70e691388e8f 280 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.1E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_06245 b158260f78ab84ed241a70e691388e8f 280 SUPERFAMILY SSF46785 1 111 7.78E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_06245 b158260f78ab84ed241a70e691388e8f 280 Gene3D G3DSA:1.10.10.10 1 84 2.4E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_11315 40e997a8e2d7b354301562c89f8c69da 299 Gene3D G3DSA:3.40.50.300 1 228 1.1E-48 T 13-10-2018 AP3564_11315 40e997a8e2d7b354301562c89f8c69da 299 SUPERFAMILY SSF52540 2 221 2.0E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_11315 40e997a8e2d7b354301562c89f8c69da 299 SMART SM00382 26 203 4.8E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_11315 40e997a8e2d7b354301562c89f8c69da 299 Pfam PF00005 ABC transporter 17 154 6.9E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_11960 d7f9acf1a26b61dfc1f30ef5c0ad5fd5 337 Pfam PF01032 FecCD transport family 21 334 2.4E-83 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 AP3564_11960 d7f9acf1a26b61dfc1f30ef5c0ad5fd5 337 SUPERFAMILY SSF81345 7 334 4.18E-76 T 13-10-2018 IPR037294 ABC transporter, BtuC-like AP3564_11960 d7f9acf1a26b61dfc1f30ef5c0ad5fd5 337 Gene3D G3DSA:1.10.3470.10 7 337 2.6E-90 T 13-10-2018 IPR037294 ABC transporter, BtuC-like AP3564_18165 e9033a10e258418833cdc82d6a2268c0 217 Pfam PF01895 PhoU domain 119 203 1.0E-20 T 13-10-2018 IPR026022 PhoU domain AP3564_18165 e9033a10e258418833cdc82d6a2268c0 217 Pfam PF01895 PhoU domain 17 103 2.3E-19 T 13-10-2018 IPR026022 PhoU domain AP3564_18165 e9033a10e258418833cdc82d6a2268c0 217 SUPERFAMILY SSF109755 2 215 3.45E-65 T 13-10-2018 AP3564_18165 e9033a10e258418833cdc82d6a2268c0 217 Gene3D G3DSA:1.20.58.220 1 217 1.4E-72 T 13-10-2018 IPR038078 PhoU-like domain superfamily AP3564_18165 e9033a10e258418833cdc82d6a2268c0 217 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 4 212 1.5E-61 T 13-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 AP3564_18165 e9033a10e258418833cdc82d6a2268c0 217 PIRSF PIRSF003107 1 217 2.1E-61 T 13-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 AP3564_01075 ca305f6d0b4a65165f7abc6d4ba0b7b7 101 Pfam PF01609 Transposase DDE domain 15 80 2.1E-10 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_01075 ca305f6d0b4a65165f7abc6d4ba0b7b7 101 SUPERFAMILY SSF53098 10 89 1.29E-13 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_06295 3d2136900619fda73b160582b68f7912 595 TIGRFAM TIGR00795 lctP: transporter, lactate permease (LctP) family 5 543 9.8E-111 T 13-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 AP3564_06295 3d2136900619fda73b160582b68f7912 595 Pfam PF02652 L-lactate permease 7 541 1.7E-117 T 13-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 AP3564_10940 0c51f4d297397f6bd57be8bd6d190dfa 399 Pfam PF01266 FAD dependent oxidoreductase 3 389 3.9E-62 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AP3564_10940 0c51f4d297397f6bd57be8bd6d190dfa 399 Gene3D G3DSA:3.30.9.10 86 352 1.6E-81 T 13-10-2018 AP3564_10940 0c51f4d297397f6bd57be8bd6d190dfa 399 Gene3D G3DSA:3.50.50.60 3 385 1.6E-81 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_10940 0c51f4d297397f6bd57be8bd6d190dfa 399 SUPERFAMILY SSF51905 1 286 1.17E-48 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_17285 ca03f453c5adae62131a614f2f1a5125 223 SUPERFAMILY SSF52540 5 220 1.53E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_17285 ca03f453c5adae62131a614f2f1a5125 223 Pfam PF02224 Cytidylate kinase 7 220 6.1E-82 T 13-10-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 AP3564_17285 ca03f453c5adae62131a614f2f1a5125 223 Gene3D G3DSA:3.40.50.300 1 223 3.8E-93 T 13-10-2018 AP3564_17285 ca03f453c5adae62131a614f2f1a5125 223 TIGRFAM TIGR00017 cmk: cytidylate kinase 4 215 4.0E-88 T 13-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 AP3564_17285 ca03f453c5adae62131a614f2f1a5125 223 Hamap MF_00238 Cytidylate kinase [cmk]. 5 223 35.006 T 13-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 AP3564_03965 ad6c0064b2da247b07199add70e8ce86 134 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 1 127 3.7E-24 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I AP3564_03965 ad6c0064b2da247b07199add70e8ce86 134 SMART SM00226 1 130 8.6E-21 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I AP3564_03965 ad6c0064b2da247b07199add70e8ce86 134 Gene3D G3DSA:3.40.50.2300 1 134 2.4E-39 T 13-10-2018 AP3564_03965 ad6c0064b2da247b07199add70e8ce86 134 SUPERFAMILY SSF52788 1 131 7.2E-29 T 13-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily AP3564_16940 7912f172cc19143b7b936bcf1dfc9b8f 120 Pfam PF08807 Bacterial domain of unknown function (DUF1798) 10 115 6.9E-32 T 13-10-2018 IPR014913 Protein of unknown function DUF1798 AP3564_16940 7912f172cc19143b7b936bcf1dfc9b8f 120 SUPERFAMILY SSF140415 2 119 5.89E-35 T 13-10-2018 IPR023351 YppE-like superfamily AP3564_16940 7912f172cc19143b7b936bcf1dfc9b8f 120 Gene3D G3DSA:1.20.120.440 2 120 6.0E-40 T 13-10-2018 IPR023351 YppE-like superfamily AP3564_03640 adba9a59619ba1636d5da9c2aa6e1f53 323 Gene3D G3DSA:3.40.50.720 5 315 1.1E-126 T 13-10-2018 AP3564_03640 adba9a59619ba1636d5da9c2aa6e1f53 323 SUPERFAMILY SSF51735 104 288 5.0E-63 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_03640 adba9a59619ba1636d5da9c2aa6e1f53 323 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 227 243 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AP3564_03640 adba9a59619ba1636d5da9c2aa6e1f53 323 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 111 288 9.0E-65 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AP3564_03640 adba9a59619ba1636d5da9c2aa6e1f53 323 SUPERFAMILY SSF52283 2 136 1.59E-37 T 13-10-2018 AP3564_03640 adba9a59619ba1636d5da9c2aa6e1f53 323 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 150 177 - T 13-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 AP3564_03640 adba9a59619ba1636d5da9c2aa6e1f53 323 Gene3D G3DSA:3.40.50.720 99 288 1.1E-126 T 13-10-2018 AP3564_03640 adba9a59619ba1636d5da9c2aa6e1f53 323 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 5 319 1.9E-32 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 AP3564_11560 03f402063b5bb68921ccf627f84aacf4 55 Pfam PF02416 mttA/Hcf106 family 3 54 3.3E-22 T 13-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 AP3564_11560 03f402063b5bb68921ccf627f84aacf4 55 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 2 45 6.9E-19 T 13-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 AP3564_11560 03f402063b5bb68921ccf627f84aacf4 55 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 55 16.281 T 13-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 AP3564_07645 a49f5d4f2fe2be4d6f2260bb4c1010d4 385 PIRSF PIRSF003169 1 385 9.7E-160 T 13-10-2018 IPR016381 Signal transduction histidine kinase, DegS GO:0000155|GO:0000160|GO:0004673 AP3564_07645 a49f5d4f2fe2be4d6f2260bb4c1010d4 385 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 291 383 2.3E-12 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_07645 a49f5d4f2fe2be4d6f2260bb4c1010d4 385 Pfam PF05384 Sensor protein DegS 12 170 3.8E-59 T 13-10-2018 IPR008595 Sensor DegS GO:0007165|GO:0016301 AP3564_07645 a49f5d4f2fe2be4d6f2260bb4c1010d4 385 Gene3D G3DSA:3.30.565.10 246 384 4.1E-32 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_07645 a49f5d4f2fe2be4d6f2260bb4c1010d4 385 Pfam PF07730 Histidine kinase 180 248 3.4E-16 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AP3564_07645 a49f5d4f2fe2be4d6f2260bb4c1010d4 385 SMART SM00387 289 385 6.9E-10 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_07645 a49f5d4f2fe2be4d6f2260bb4c1010d4 385 SUPERFAMILY SSF55874 253 382 1.44E-21 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_08885 929be57180db8ac155361aef1ec2fc80 116 Pfam PF07875 Coat F domain 25 86 6.3E-21 T 13-10-2018 IPR012851 Spore coat protein CotF-like AP3564_05220 5248368335a90dbed77f06efda42679d 87 Gene3D G3DSA:3.10.290.10 1 87 3.3E-26 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AP3564_05220 5248368335a90dbed77f06efda42679d 87 PIRSF PIRSF038881 1 87 7.9E-33 T 13-10-2018 IPR025490 RNA-binding protein, HP1423 type AP3564_05220 5248368335a90dbed77f06efda42679d 87 SUPERFAMILY SSF55174 1 77 1.09E-20 T 13-10-2018 AP3564_05220 5248368335a90dbed77f06efda42679d 87 Pfam PF01479 S4 domain 1 47 7.2E-13 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05220 5248368335a90dbed77f06efda42679d 87 SMART SM00363 1 64 3.6E-12 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_02975 f1c2504462362e2461410e4e00190a8d 68 Pfam PF07870 Protein of unknown function (DUF1657) 9 55 1.5E-15 T 13-10-2018 IPR012452 Protein of unknown function DUF1657 AP3564_03735 2668c662b87ad34aac75207fcb1884e9 212 Pfam PF02397 Bacterial sugar transferase 18 206 1.5E-72 T 13-10-2018 IPR003362 Bacterial sugar transferase AP3564_07705 b3b390d8c49f72ff6e26e4787b67d81c 144 Gene3D G3DSA:2.30.290.10 1 144 3.6E-56 T 13-10-2018 IPR024046 Flagellar assembly factor FliW domain superfamily AP3564_07705 b3b390d8c49f72ff6e26e4787b67d81c 144 Hamap MF_01185 Flagellar assembly factor FliW [fliW]. 17 141 26.818 T 13-10-2018 IPR003775 Flagellar assembly factor FliW GO:0044780 AP3564_07705 b3b390d8c49f72ff6e26e4787b67d81c 144 Pfam PF02623 FliW protein 19 138 3.6E-41 T 13-10-2018 IPR003775 Flagellar assembly factor FliW GO:0044780 AP3564_07705 b3b390d8c49f72ff6e26e4787b67d81c 144 SUPERFAMILY SSF141457 1 141 1.44E-49 T 13-10-2018 IPR024046 Flagellar assembly factor FliW domain superfamily AP3564_10630 f437890099e9e1d99f18c7cc4e6da3be 116 SUPERFAMILY SSF103247 2 114 6.54E-32 T 13-10-2018 IPR035923 TT1751-like domain superfamily AP3564_10630 f437890099e9e1d99f18c7cc4e6da3be 116 Pfam PF03625 Domain of unknown function DUF302 25 85 1.0E-17 T 13-10-2018 IPR005180 Domain of unknown function DUF302 AP3564_10630 f437890099e9e1d99f18c7cc4e6da3be 116 PIRSF PIRSF021774 1 116 4.1E-38 T 13-10-2018 IPR016796 Uncharacterised conserved protein UCP021774 AP3564_10630 f437890099e9e1d99f18c7cc4e6da3be 116 Gene3D G3DSA:3.30.310.70 1 116 1.8E-44 T 13-10-2018 IPR035923 TT1751-like domain superfamily AP3564_06300 171134da7d0a1b663fadf45b58f81897 97 Pfam PF02583 Metal-sensitive transcriptional repressor 15 93 3.3E-24 T 13-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 AP3564_06300 171134da7d0a1b663fadf45b58f81897 97 Gene3D G3DSA:1.20.58.1000 1 97 1.3E-28 T 13-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily AP3564_06950 e2136a66fff54598a45f9c7b440f1491 231 SUPERFAMILY SSF53067 3 107 5.18E-29 T 13-10-2018 AP3564_06950 e2136a66fff54598a45f9c7b440f1491 231 SUPERFAMILY SSF53067 108 213 2.46E-14 T 13-10-2018 AP3564_06950 e2136a66fff54598a45f9c7b440f1491 231 Pfam PF00814 Glycoprotease family 32 147 3.2E-31 T 13-10-2018 IPR000905 Gcp-like domain AP3564_06950 e2136a66fff54598a45f9c7b440f1491 231 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 3 215 2.2E-50 T 13-10-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 AP3564_06950 e2136a66fff54598a45f9c7b440f1491 231 Gene3D G3DSA:3.30.420.40 95 188 4.6E-49 T 13-10-2018 AP3564_06950 e2136a66fff54598a45f9c7b440f1491 231 Gene3D G3DSA:3.30.420.40 3 215 4.6E-49 T 13-10-2018 AP3564_19535 0a58813de7591e3a073229259f4e809b 566 Pfam PF06160 Septation ring formation regulator, EzrA 3 557 6.9E-171 T 13-10-2018 IPR010379 Septation ring formation regulator EzrA GO:0000921|GO:0005940|GO:0016021 AP3564_19535 0a58813de7591e3a073229259f4e809b 566 Hamap MF_00728 Septation ring formation regulator EzrA [ezrA]. 1 562 21.836 T 13-10-2018 IPR010379 Septation ring formation regulator EzrA GO:0000921|GO:0005940|GO:0016021 AP3564_19535 0a58813de7591e3a073229259f4e809b 566 SUPERFAMILY SSF58100 318 493 4.97E-5 T 13-10-2018 AP3564_06555 2e7434f11e8844661a38a1a1f62412fa 261 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 103 260 5.0E-6 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 AP3564_06555 2e7434f11e8844661a38a1a1f62412fa 261 Gene3D G3DSA:3.90.850.10 1 261 1.5E-76 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AP3564_06555 2e7434f11e8844661a38a1a1f62412fa 261 SUPERFAMILY SSF56529 4 261 5.36E-69 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AP3564_12765 23545161f91987a63ca7043df21ddcf9 1201 Pfam PF00350 Dynamin family 46 200 3.2E-24 T 13-10-2018 IPR022812 Dynamin superfamily AP3564_12765 23545161f91987a63ca7043df21ddcf9 1201 Pfam PF00350 Dynamin family 628 850 1.7E-40 T 13-10-2018 IPR022812 Dynamin superfamily AP3564_12765 23545161f91987a63ca7043df21ddcf9 1201 Gene3D G3DSA:3.40.50.300 46 275 1.4E-33 T 13-10-2018 AP3564_12765 23545161f91987a63ca7043df21ddcf9 1201 SUPERFAMILY SSF52540 30 256 3.23E-31 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_12765 23545161f91987a63ca7043df21ddcf9 1201 SUPERFAMILY SSF52540 609 908 2.29E-34 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_10235 ff33d57926c4a50a34e30df0c172ec14 270 SUPERFAMILY SSF53613 4 263 3.59E-87 T 13-10-2018 IPR029056 Ribokinase-like AP3564_10235 ff33d57926c4a50a34e30df0c172ec14 270 Pfam PF08543 Phosphomethylpyrimidine kinase 13 258 6.4E-100 T 13-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 AP3564_10235 ff33d57926c4a50a34e30df0c172ec14 270 Gene3D G3DSA:3.40.1190.20 1 269 6.8E-107 T 13-10-2018 IPR029056 Ribokinase-like AP3564_10235 ff33d57926c4a50a34e30df0c172ec14 270 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 6 260 2.5E-107 T 13-10-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AP3564_13165 95b835aa05af0eae4f3bc1a18284c65c 148 Pfam PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) 31 142 7.0E-9 T 13-10-2018 IPR019076 Sporulation lipoprotein YhcN/YlaJ-like AP3564_17985 b021511ada829de9f2ef3b8d031a7600 676 Pfam PF06527 TniQ 3 157 9.3E-10 T 13-10-2018 IPR009492 TniQ AP3564_17985 b021511ada829de9f2ef3b8d031a7600 676 Gene3D G3DSA:1.10.10.60 382 422 2.9E-5 T 13-10-2018 AP3564_17985 b021511ada829de9f2ef3b8d031a7600 676 Pfam PF15978 Tn7-like transposition protein D 488 613 1.1E-20 T 13-10-2018 IPR032750 Transposon Tn7 transposition protein TnsD, C-termianl AP3564_17985 b021511ada829de9f2ef3b8d031a7600 676 Pfam PF15978 Tn7-like transposition protein D 200 479 6.3E-67 T 13-10-2018 IPR032750 Transposon Tn7 transposition protein TnsD, C-termianl AP3564_00210 133058f1757dcfd5fe071e32cacf4d07 381 Gene3D G3DSA:3.20.20.70 132 375 7.3E-20 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_00210 133058f1757dcfd5fe071e32cacf4d07 381 Pfam PF04055 Radical SAM superfamily 141 292 1.2E-16 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AP3564_00210 133058f1757dcfd5fe071e32cacf4d07 381 SMART SM00729 131 340 1.6E-12 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AP3564_00210 133058f1757dcfd5fe071e32cacf4d07 381 SUPERFAMILY SSF102114 142 347 6.02E-32 T 13-10-2018 AP3564_00210 133058f1757dcfd5fe071e32cacf4d07 381 TIGRFAM TIGR04043 rSAM_MSMEG_0568: radical SAM protein, MSMEG_0568 family 22 372 8.8E-146 T 13-10-2018 IPR016779 Radical SAM enzyme, MSMEG0568 AP3564_05575 8bf41d29fbbb41786ec894a2ae15e559 182 PIRSF PIRSF015034 1 180 6.8E-69 T 13-10-2018 IPR025542 YacH protein AP3564_05575 8bf41d29fbbb41786ec894a2ae15e559 182 Pfam PF02151 UvrB/uvrC motif 138 172 1.5E-7 T 13-10-2018 IPR001943 UVR domain GO:0005515 AP3564_05575 8bf41d29fbbb41786ec894a2ae15e559 182 SUPERFAMILY SSF46600 137 173 1.96E-6 T 13-10-2018 IPR036876 UVR domain superfamily AP3564_11565 aa9768760cb6199ad38ca918ae8bad0b 64 ProSitePatterns PS00304 Small, acid-soluble spore proteins, alpha/beta type, signature 1. 20 29 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 AP3564_11565 aa9768760cb6199ad38ca918ae8bad0b 64 Pfam PF00269 Small, acid-soluble spore proteins, alpha/beta type 5 57 1.9E-21 T 13-10-2018 IPR001448 Small acid-soluble spore protein, alpha/beta-type GO:0003690|GO:0006265 AP3564_11565 aa9768760cb6199ad38ca918ae8bad0b 64 ProSitePatterns PS00684 Small, acid-soluble spore proteins, alpha/beta type, signature 2. 38 52 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 AP3564_11565 aa9768760cb6199ad38ca918ae8bad0b 64 Gene3D G3DSA:1.10.8.910 5 64 5.0E-28 T 13-10-2018 IPR038300 SASP, alpha/beta-type superfamily AP3564_02620 8be1a015f0873ae3c567ba5a3004fbcb 144 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 5 131 1.2E-21 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type AP3564_02620 8be1a015f0873ae3c567ba5a3004fbcb 144 Gene3D G3DSA:1.10.10.10 1 142 4.5E-43 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_02620 8be1a015f0873ae3c567ba5a3004fbcb 144 Pfam PF02082 Transcriptional regulator 2 79 2.6E-22 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type AP3564_02620 8be1a015f0873ae3c567ba5a3004fbcb 144 SUPERFAMILY SSF46785 2 133 4.91E-30 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_00660 d9d3dfe4d5c14f9b15cddf723c9978e7 245 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_00660 d9d3dfe4d5c14f9b15cddf723c9978e7 245 Gene3D G3DSA:3.40.50.300 1 238 2.4E-63 T 13-10-2018 AP3564_00660 d9d3dfe4d5c14f9b15cddf723c9978e7 245 Pfam PF00005 ABC transporter 17 164 1.3E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_00660 d9d3dfe4d5c14f9b15cddf723c9978e7 245 SUPERFAMILY SSF52540 2 235 8.91E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_00660 d9d3dfe4d5c14f9b15cddf723c9978e7 245 SMART SM00382 26 223 1.9E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_12400 fd414d0cc0e38a7bbfb5b58036b3ffb0 526 Pfam PF01019 Gamma-glutamyltranspeptidase 25 521 3.8E-156 T 13-10-2018 AP3564_12400 fd414d0cc0e38a7bbfb5b58036b3ffb0 526 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 11 518 1.1E-172 T 13-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 AP3564_12400 fd414d0cc0e38a7bbfb5b58036b3ffb0 526 Gene3D G3DSA:1.10.246.130 234 341 2.1E-32 T 13-10-2018 AP3564_12400 fd414d0cc0e38a7bbfb5b58036b3ffb0 526 SUPERFAMILY SSF56235 4 526 8.49E-166 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AP3564_12400 fd414d0cc0e38a7bbfb5b58036b3ffb0 526 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 32 57 1.8E-41 T 13-10-2018 AP3564_12400 fd414d0cc0e38a7bbfb5b58036b3ffb0 526 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 102 120 1.8E-41 T 13-10-2018 AP3564_12400 fd414d0cc0e38a7bbfb5b58036b3ffb0 526 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 247 266 1.8E-41 T 13-10-2018 AP3564_12400 fd414d0cc0e38a7bbfb5b58036b3ffb0 526 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 218 234 1.8E-41 T 13-10-2018 AP3564_12400 fd414d0cc0e38a7bbfb5b58036b3ffb0 526 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 422 439 1.8E-41 T 13-10-2018 AP3564_12400 fd414d0cc0e38a7bbfb5b58036b3ffb0 526 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 120 139 1.8E-41 T 13-10-2018 AP3564_12400 fd414d0cc0e38a7bbfb5b58036b3ffb0 526 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 340 358 1.8E-41 T 13-10-2018 AP3564_12400 fd414d0cc0e38a7bbfb5b58036b3ffb0 526 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 364 382 1.8E-41 T 13-10-2018 AP3564_12400 fd414d0cc0e38a7bbfb5b58036b3ffb0 526 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 395 410 1.8E-41 T 13-10-2018 AP3564_12400 fd414d0cc0e38a7bbfb5b58036b3ffb0 526 Gene3D G3DSA:3.60.20.40 342 526 6.9E-66 T 13-10-2018 AP3564_05120 e4d20bfad5d5f696512c107662cdaa11 298 ProDom PD127708 YABG PROTEASE SPORULATION-SPECIFIC PEPTIDASE U57 BH0058 ORTHOLOG SPORE FAMILY B.SUBTILIS 6 282 3.0E-107 T 13-10-2018 IPR008764 Peptidase U57, YabG AP3564_05120 e4d20bfad5d5f696512c107662cdaa11 298 TIGRFAM TIGR02855 spore_yabG: sporulation peptidase YabG 6 287 5.7E-132 T 13-10-2018 IPR008764 Peptidase U57, YabG AP3564_05120 e4d20bfad5d5f696512c107662cdaa11 298 PIRSF PIRSF011575 2 291 2.5E-115 T 13-10-2018 IPR008764 Peptidase U57, YabG AP3564_05120 e4d20bfad5d5f696512c107662cdaa11 298 Pfam PF05582 YabG peptidase U57 6 286 3.5E-111 T 13-10-2018 IPR008764 Peptidase U57, YabG AP3564_13585 cc543a7c435c24fc14a3c1c01f5c3776 133 SUPERFAMILY SSF54637 4 131 5.2E-35 T 13-10-2018 IPR029069 HotDog domain superfamily AP3564_13585 cc543a7c435c24fc14a3c1c01f5c3776 133 Gene3D G3DSA:3.10.129.10 3 132 1.3E-37 T 13-10-2018 AP3564_13585 cc543a7c435c24fc14a3c1c01f5c3776 133 Pfam PF13279 Thioesterase-like superfamily 12 123 8.4E-18 T 13-10-2018 AP3564_06060 94726f146e520d2fa3ee28c48b5643ed 452 Pfam PF07949 YbbR-like protein 56 135 2.4E-11 T 13-10-2018 IPR012505 YbbR-like AP3564_06060 94726f146e520d2fa3ee28c48b5643ed 452 Pfam PF07949 YbbR-like protein 240 319 1.7E-19 T 13-10-2018 IPR012505 YbbR-like AP3564_06060 94726f146e520d2fa3ee28c48b5643ed 452 Pfam PF07949 YbbR-like protein 144 229 3.8E-14 T 13-10-2018 IPR012505 YbbR-like AP3564_06060 94726f146e520d2fa3ee28c48b5643ed 452 Gene3D G3DSA:2.170.120.30 43 147 6.4E-28 T 13-10-2018 AP3564_06060 94726f146e520d2fa3ee28c48b5643ed 452 Gene3D G3DSA:2.170.120.40 237 322 2.3E-21 T 13-10-2018 AP3564_06060 94726f146e520d2fa3ee28c48b5643ed 452 Gene3D G3DSA:2.170.120.40 148 232 1.6E-6 T 13-10-2018 AP3564_06060 94726f146e520d2fa3ee28c48b5643ed 452 Gene3D G3DSA:2.170.120.30 326 426 2.6E-15 T 13-10-2018 AP3564_06805 aca4b6f6d48671f32b7d4939ac6d87a9 116 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 4 111 2.2E-33 T 13-10-2018 IPR003477 mRNA interferase PemK-like GO:0003677 AP3564_06805 aca4b6f6d48671f32b7d4939ac6d87a9 116 SUPERFAMILY SSF50118 2 113 7.03E-42 T 13-10-2018 AP3564_06805 aca4b6f6d48671f32b7d4939ac6d87a9 116 Gene3D G3DSA:2.30.30.110 1 116 1.8E-53 T 13-10-2018 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor AP3564_06805 aca4b6f6d48671f32b7d4939ac6d87a9 116 PIRSF PIRSF033490 1 113 4.9E-39 T 13-10-2018 IPR003477 mRNA interferase PemK-like GO:0003677 AP3564_16190 b50d4bf41541034402e400c5c3befa6e 147 Pfam PF02050 Flagellar FliJ protein 23 141 8.1E-19 T 13-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 AP3564_16190 b50d4bf41541034402e400c5c3befa6e 147 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 5 139 1.4E-28 T 13-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 AP3564_08075 b39a9f396e76a9ba3c1d8364db5cc73b 222 SUPERFAMILY SSF51569 1 212 4.08E-64 T 13-10-2018 AP3564_08075 b39a9f396e76a9ba3c1d8364db5cc73b 222 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 3 198 4.6E-47 T 13-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 AP3564_08075 b39a9f396e76a9ba3c1d8364db5cc73b 222 Gene3D G3DSA:3.20.20.70 1 218 1.4E-76 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_08075 b39a9f396e76a9ba3c1d8364db5cc73b 222 ProSitePatterns PS01054 Transaldolase signature 1. 24 32 - T 13-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 AP3564_19355 532fcf4f0a0c594a351b3a7720190ad0 240 Gene3D G3DSA:1.10.10.10 136 238 1.5E-37 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_19355 532fcf4f0a0c594a351b3a7720190ad0 240 SMART SM00862 157 233 1.9E-30 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AP3564_19355 532fcf4f0a0c594a351b3a7720190ad0 240 SMART SM00448 3 114 1.9E-46 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_19355 532fcf4f0a0c594a351b3a7720190ad0 240 SUPERFAMILY SSF52172 2 130 4.41E-43 T 13-10-2018 IPR011006 CheY-like superfamily AP3564_19355 532fcf4f0a0c594a351b3a7720190ad0 240 Gene3D G3DSA:3.40.50.2300 1 135 9.5E-39 T 13-10-2018 AP3564_19355 532fcf4f0a0c594a351b3a7720190ad0 240 Pfam PF00486 Transcriptional regulatory protein, C terminal 158 233 3.7E-30 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AP3564_19355 532fcf4f0a0c594a351b3a7720190ad0 240 Pfam PF00072 Response regulator receiver domain 5 115 2.5E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_19355 532fcf4f0a0c594a351b3a7720190ad0 240 SUPERFAMILY SSF46894 134 234 4.54E-32 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AP3564_18810 239f7835830bfcfa0b08853d12e42474 478 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 76 285 1.2E-46 T 13-10-2018 IPR000477 Reverse transcriptase domain AP3564_18810 239f7835830bfcfa0b08853d12e42474 478 Gene3D G3DSA:3.30.70.270 176 284 1.9E-6 T 13-10-2018 AP3564_18810 239f7835830bfcfa0b08853d12e42474 478 SUPERFAMILY SSF56672 24 310 1.37E-53 T 13-10-2018 AP3564_18810 239f7835830bfcfa0b08853d12e42474 478 TIGRFAM TIGR04416 group_II_RT_mat: group II intron reverse transcriptase/maturase 21 350 2.2E-113 T 13-10-2018 IPR030931 Group II intron reverse transcriptase/maturase AP3564_09230 fc8673d2d09698448fb053e7999ed55c 494 Pfam PF00361 Proton-conducting membrane transporter 128 415 2.6E-48 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AP3564_09230 fc8673d2d09698448fb053e7999ed55c 494 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 235 259 6.4E-16 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AP3564_09230 fc8673d2d09698448fb053e7999ed55c 494 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 163 187 6.4E-16 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AP3564_09230 fc8673d2d09698448fb053e7999ed55c 494 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 375 401 6.4E-16 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AP3564_09230 fc8673d2d09698448fb053e7999ed55c 494 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 323 342 6.4E-16 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AP3564_09230 fc8673d2d09698448fb053e7999ed55c 494 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 133 152 6.4E-16 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AP3564_14150 f6c504890e73eb3892231b4ae444a804 63 Gene3D G3DSA:3.40.50.300 1 63 1.9E-17 T 13-10-2018 AP3564_14150 f6c504890e73eb3892231b4ae444a804 63 Pfam PF13500 AAA domain 3 50 3.5E-13 T 13-10-2018 AP3564_14150 f6c504890e73eb3892231b4ae444a804 63 SUPERFAMILY SSF52540 1 58 1.03E-15 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_07995 3fa419b1d75c004ce53fe80ea9dd17cc 496 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 15 440 1.0E-53 T 13-10-2018 IPR001248 Purine-cytosine permease GO:0016020|GO:0022857|GO:0055085 AP3564_07995 3fa419b1d75c004ce53fe80ea9dd17cc 496 Gene3D G3DSA:1.10.4160.10 1 468 3.7E-105 T 13-10-2018 IPR038271 Purine-cytosine permease superfamily AP3564_12665 ee867aeef38b266e55db3fc481ec441f 309 SUPERFAMILY SSF103481 41 145 4.05E-16 T 13-10-2018 AP3564_12665 ee867aeef38b266e55db3fc481ec441f 309 Pfam PF00892 EamA-like transporter family 10 142 2.6E-17 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AP3564_12665 ee867aeef38b266e55db3fc481ec441f 309 Pfam PF00892 EamA-like transporter family 154 287 1.7E-19 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AP3564_12665 ee867aeef38b266e55db3fc481ec441f 309 SUPERFAMILY SSF103481 190 289 4.18E-13 T 13-10-2018 AP3564_16890 b98728531caa320a716e8de75a8662cf 637 Pfam PF13307 Helicase C-terminal domain 505 630 4.6E-18 T 13-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 AP3564_16890 b98728531caa320a716e8de75a8662cf 637 SMART SM00491 499 618 6.4E-6 T 13-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 AP3564_16890 b98728531caa320a716e8de75a8662cf 637 Gene3D G3DSA:3.40.50.300 463 618 3.8E-19 T 13-10-2018 AP3564_16890 b98728531caa320a716e8de75a8662cf 637 Gene3D G3DSA:3.40.50.300 37 312 4.5E-30 T 13-10-2018 AP3564_16890 b98728531caa320a716e8de75a8662cf 637 SUPERFAMILY SSF52540 52 619 1.72E-22 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_00345 37243d06091bef438219e5d62200fcf0 433 Gene3D G3DSA:3.40.640.10 62 329 2.4E-158 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_00345 37243d06091bef438219e5d62200fcf0 433 PIRSF PIRSF000521 126 433 6.1E-43 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AP3564_00345 37243d06091bef438219e5d62200fcf0 433 PIRSF PIRSF000521 26 133 4.5E-5 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AP3564_00345 37243d06091bef438219e5d62200fcf0 433 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 246 283 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AP3564_00345 37243d06091bef438219e5d62200fcf0 433 Gene3D G3DSA:3.90.1150.10 10 427 2.4E-158 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_00345 37243d06091bef438219e5d62200fcf0 433 TIGRFAM TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase 13 432 3.7E-197 T 13-10-2018 IPR004632 4-aminobutyrate aminotransferase, bacterial GO:0003867|GO:0009448 AP3564_00345 37243d06091bef438219e5d62200fcf0 433 Pfam PF00202 Aminotransferase class-III 28 430 3.6E-129 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AP3564_00345 37243d06091bef438219e5d62200fcf0 433 SUPERFAMILY SSF53383 29 431 3.34E-129 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_15005 52c258b832e4dd6acb3d4598ffe9c0a9 67 Pfam PF13076 Fur-regulated basic protein A 12 45 7.5E-11 T 13-10-2018 IPR025072 Fur-regulated basic protein A AP3564_12215 a1fcdd211975b6a168fadb2d4bb35f34 440 Pfam PF00860 Permease family 10 388 2.1E-116 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 AP3564_12215 a1fcdd211975b6a168fadb2d4bb35f34 440 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 9 417 2.8E-140 T 13-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 AP3564_12215 a1fcdd211975b6a168fadb2d4bb35f34 440 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 335 355 - T 13-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 AP3564_12215 a1fcdd211975b6a168fadb2d4bb35f34 440 TIGRFAM TIGR03173 pbuX: xanthine permease 13 420 8.0E-162 T 13-10-2018 IPR017588 Uric acid permease UacT-like GO:0016021|GO:0022857|GO:0055085 AP3564_08915 e40b9cee92634d9123c516f2d1c08667 127 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 4 125 41.518 T 13-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 AP3564_08915 e40b9cee92634d9123c516f2d1c08667 127 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 47 76 - T 13-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AP3564_08915 e40b9cee92634d9123c516f2d1c08667 127 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 2 127 4.4E-58 T 13-10-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 AP3564_08915 e40b9cee92634d9123c516f2d1c08667 127 Pfam PF01597 Glycine cleavage H-protein 7 126 2.7E-51 T 13-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate AP3564_08915 e40b9cee92634d9123c516f2d1c08667 127 SUPERFAMILY SSF51230 3 126 3.71E-47 T 13-10-2018 IPR011053 Single hybrid motif AP3564_08915 e40b9cee92634d9123c516f2d1c08667 127 Gene3D G3DSA:2.40.50.100 1 125 5.4E-54 T 13-10-2018 AP3564_13145 067f9aa3ab7c478a2213a3cdf0549955 403 Gene3D G3DSA:1.20.1250.20 12 396 1.0E-48 T 13-10-2018 AP3564_13145 067f9aa3ab7c478a2213a3cdf0549955 403 SUPERFAMILY SSF103473 12 399 2.49E-59 T 13-10-2018 IPR036259 MFS transporter superfamily AP3564_13145 067f9aa3ab7c478a2213a3cdf0549955 403 PRINTS PR01035 Tetracycline resistance protein signature 53 72 6.4E-7 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AP3564_13145 067f9aa3ab7c478a2213a3cdf0549955 403 PRINTS PR01035 Tetracycline resistance protein signature 142 164 6.4E-7 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AP3564_13145 067f9aa3ab7c478a2213a3cdf0549955 403 PRINTS PR01035 Tetracycline resistance protein signature 170 190 6.4E-7 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AP3564_13145 067f9aa3ab7c478a2213a3cdf0549955 403 PRINTS PR01035 Tetracycline resistance protein signature 305 325 6.4E-7 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AP3564_13145 067f9aa3ab7c478a2213a3cdf0549955 403 Pfam PF07690 Major Facilitator Superfamily 21 250 2.1E-26 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AP3564_06435 84f8645f52c054b1ba4a319f3a4833a6 482 TIGRFAM TIGR04405 SkfF: sporulation killing factor system integral membrane protein 1 479 4.0E-99 T 13-10-2018 IPR030920 Sporulation killing factor system integral membrane protein SkfF AP3564_09205 2b216b8fa1fd1666d02d63b84c312fc8 758 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 671 756 1.7E-6 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_09205 2b216b8fa1fd1666d02d63b84c312fc8 758 Pfam PF07730 Histidine kinase 563 628 7.2E-11 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AP3564_09205 2b216b8fa1fd1666d02d63b84c312fc8 758 SUPERFAMILY SSF50156 26 88 3.15E-7 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 AP3564_09205 2b216b8fa1fd1666d02d63b84c312fc8 758 SUPERFAMILY SSF55874 634 758 2.88E-18 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_09205 2b216b8fa1fd1666d02d63b84c312fc8 758 Gene3D G3DSA:2.30.42.10 25 99 1.2E-5 T 13-10-2018 AP3564_09205 2b216b8fa1fd1666d02d63b84c312fc8 758 SMART SM00387 667 758 6.0E-5 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_09205 2b216b8fa1fd1666d02d63b84c312fc8 758 Gene3D G3DSA:3.30.565.10 627 758 5.3E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_09205 2b216b8fa1fd1666d02d63b84c312fc8 758 SUPERFAMILY SSF55781 393 541 4.81E-5 T 13-10-2018 AP3564_05545 91e2ca56ea14615936218aefeb31da29 463 Pfam PF07501 G5 domain 304 369 2.9E-12 T 13-10-2018 IPR011098 G5 domain AP3564_05545 91e2ca56ea14615936218aefeb31da29 463 Gene3D G3DSA:2.20.230.10 297 371 3.0E-11 T 13-10-2018 AP3564_05545 91e2ca56ea14615936218aefeb31da29 463 SMART SM01208 297 374 1.6E-8 T 13-10-2018 IPR011098 G5 domain AP3564_05545 91e2ca56ea14615936218aefeb31da29 463 Pfam PF04294 VanW like protein 221 290 6.2E-8 T 13-10-2018 IPR007391 Vancomycin resistance VanW AP3564_02345 1369c7fa9115e448f9c62d7ac2b01f48 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 10 246 3.0E-67 T 13-10-2018 AP3564_02345 1369c7fa9115e448f9c62d7ac2b01f48 249 SUPERFAMILY SSF51735 3 247 1.65E-80 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_02345 1369c7fa9115e448f9c62d7ac2b01f48 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 6.1E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_02345 1369c7fa9115e448f9c62d7ac2b01f48 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 6.1E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_02345 1369c7fa9115e448f9c62d7ac2b01f48 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 6.1E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_02345 1369c7fa9115e448f9c62d7ac2b01f48 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 6.1E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_02345 1369c7fa9115e448f9c62d7ac2b01f48 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 6.1E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_02345 1369c7fa9115e448f9c62d7ac2b01f48 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 6.1E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_02345 1369c7fa9115e448f9c62d7ac2b01f48 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 6.3E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_02345 1369c7fa9115e448f9c62d7ac2b01f48 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 6.3E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_02345 1369c7fa9115e448f9c62d7ac2b01f48 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 6.3E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_02345 1369c7fa9115e448f9c62d7ac2b01f48 249 Gene3D G3DSA:3.40.50.720 2 249 3.0E-80 T 13-10-2018 AP3564_16530 630b10134dfc8ce1bd348562fde21ce6 311 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 237 257 - T 13-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 AP3564_16530 630b10134dfc8ce1bd348562fde21ce6 311 Pfam PF01180 Dihydroorotate dehydrogenase 1 284 4.9E-91 T 13-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 AP3564_16530 630b10134dfc8ce1bd348562fde21ce6 311 Gene3D G3DSA:3.20.20.70 1 303 4.2E-100 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_16530 630b10134dfc8ce1bd348562fde21ce6 311 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 38 57 - T 13-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 AP3564_16530 630b10134dfc8ce1bd348562fde21ce6 311 SUPERFAMILY SSF51395 2 299 2.87E-87 T 13-10-2018 AP3564_16530 630b10134dfc8ce1bd348562fde21ce6 311 TIGRFAM TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein 2 300 7.9E-125 T 13-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 AP3564_16530 630b10134dfc8ce1bd348562fde21ce6 311 PIRSF PIRSF000164 1 301 1.6E-84 T 13-10-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 AP3564_16530 630b10134dfc8ce1bd348562fde21ce6 311 Hamap MF_00224 Dihydroorotate dehydrogenase [pyrD]. 2 299 41.822 T 13-10-2018 IPR024920 Dihydroorotate dehydrogenase, class 1 GO:0004152|GO:0005737|GO:0006221 AP3564_08690 0eb64a126f6c2ff5569576a56e382d5d 259 Pfam PF12640 UPF0489 domain 18 177 4.3E-13 T 13-10-2018 IPR024131 Uncharacterised protein family UPF0489 AP3564_01400 c2233966a4407d7c6d6c800eb8d7e325 266 Gene3D G3DSA:3.20.20.150 1 264 4.7E-53 T 13-10-2018 AP3564_01400 c2233966a4407d7c6d6c800eb8d7e325 266 SUPERFAMILY SSF51658 15 261 1.07E-44 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily AP3564_01400 c2233966a4407d7c6d6c800eb8d7e325 266 Pfam PF01261 Xylose isomerase-like TIM barrel 26 221 1.9E-27 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AP3564_07195 5101336185f2fc9b6837a199ae7d057b 752 SUPERFAMILY SSF53067 479 728 3.58E-7 T 13-10-2018 AP3564_07195 5101336185f2fc9b6837a199ae7d057b 752 PIRSF PIRSF006256 1 752 4.0E-262 T 13-10-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 AP3564_07195 5101336185f2fc9b6837a199ae7d057b 752 Pfam PF07503 HypF finger 157 188 1.5E-15 T 13-10-2018 IPR011125 Zinc finger, HypF-type GO:0008270 AP3564_07195 5101336185f2fc9b6837a199ae7d057b 752 Pfam PF07503 HypF finger 107 140 1.1E-15 T 13-10-2018 IPR011125 Zinc finger, HypF-type GO:0008270 AP3564_07195 5101336185f2fc9b6837a199ae7d057b 752 Gene3D G3DSA:3.90.870.50 7 358 1.1E-142 T 13-10-2018 AP3564_07195 5101336185f2fc9b6837a199ae7d057b 752 ProSitePatterns PS00150 Acylphosphatase signature 1. 9 19 - T 13-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AP3564_07195 5101336185f2fc9b6837a199ae7d057b 752 Pfam PF01300 Telomere recombination 208 378 2.6E-47 T 13-10-2018 IPR006070 YrdC-like domain GO:0003725 AP3564_07195 5101336185f2fc9b6837a199ae7d057b 752 Gene3D G3DSA:3.30.420.350 481 731 1.6E-112 T 13-10-2018 AP3564_07195 5101336185f2fc9b6837a199ae7d057b 752 Gene3D G3DSA:3.30.420.360 380 743 1.6E-112 T 13-10-2018 AP3564_07195 5101336185f2fc9b6837a199ae7d057b 752 TIGRFAM TIGR00143 hypF: carbamoyltransferase HypF 8 744 2.3E-230 T 13-10-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 AP3564_07195 5101336185f2fc9b6837a199ae7d057b 752 SUPERFAMILY SSF54975 3 89 4.8E-23 T 13-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AP3564_07195 5101336185f2fc9b6837a199ae7d057b 752 SUPERFAMILY SSF55821 175 390 4.27E-42 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily AP3564_07195 5101336185f2fc9b6837a199ae7d057b 752 Gene3D G3DSA:3.30.110.120 252 367 1.1E-142 T 13-10-2018 AP3564_07195 5101336185f2fc9b6837a199ae7d057b 752 Pfam PF00708 Acylphosphatase 6 88 5.1E-22 T 13-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AP3564_06675 25e95651dffc91cf6b662e74d722a1f9 407 Gene3D G3DSA:1.20.1250.20 2 397 2.4E-42 T 13-10-2018 AP3564_06675 25e95651dffc91cf6b662e74d722a1f9 407 SUPERFAMILY SSF103473 11 395 4.71E-49 T 13-10-2018 IPR036259 MFS transporter superfamily AP3564_06675 25e95651dffc91cf6b662e74d722a1f9 407 Pfam PF07690 Major Facilitator Superfamily 33 356 1.9E-22 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AP3564_06675 25e95651dffc91cf6b662e74d722a1f9 407 TIGRFAM TIGR00896 CynX: cyanate transporter 20 374 7.9E-124 T 13-10-2018 IPR004747 Cyanate transport system protein GO:0016021 AP3564_16665 ca5c09dad9d30d2b2526d5213ff64e9d 263 Pfam PF03799 Cell division protein FtsQ 122 230 1.9E-7 T 13-10-2018 IPR005548 Cell division protein FtsQ/DivIB AP3564_16665 ca5c09dad9d30d2b2526d5213ff64e9d 263 Gene3D G3DSA:3.40.50.10960 117 232 2.7E-36 T 13-10-2018 AP3564_16665 ca5c09dad9d30d2b2526d5213ff64e9d 263 Pfam PF08478 POTRA domain, FtsQ-type 50 117 1.3E-17 T 13-10-2018 IPR013685 POTRA domain, FtsQ-type AP3564_16665 ca5c09dad9d30d2b2526d5213ff64e9d 263 Gene3D G3DSA:3.10.20.310 50 116 4.3E-5 T 13-10-2018 AP3564_16665 ca5c09dad9d30d2b2526d5213ff64e9d 263 Hamap MF_00912 Cell division protein DivIB [divIB]. 9 249 27.879 T 13-10-2018 IPR026580 Cell division protein DivIB AP3564_13520 e7a5e60551af980497c86399656579f4 235 SUPERFAMILY SSF52833 1 211 7.62E-50 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AP3564_13520 e7a5e60551af980497c86399656579f4 235 Gene3D G3DSA:3.40.30.10 1 208 1.0E-81 T 13-10-2018 AP3564_13520 e7a5e60551af980497c86399656579f4 235 Pfam PF01323 DSBA-like thioredoxin domain 2 203 2.6E-49 T 13-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 AP3564_09490 69bebdd71cabb269d4fbeec10485b44e 484 ProSitePatterns PS00455 Putative AMP-binding domain signature. 150 161 - T 13-10-2018 IPR020845 AMP-binding, conserved site AP3564_09490 69bebdd71cabb269d4fbeec10485b44e 484 Hamap MF_00731 2-succinylbenzoate--CoA ligase [menE]. 8 483 48.96 T 13-10-2018 IPR010192 2-succinylbenzoate--CoA ligase GO:0005524|GO:0008756|GO:0009234 KEGG: 00130+6.2.1.26|MetaCyc: PWY-5837 AP3564_09490 69bebdd71cabb269d4fbeec10485b44e 484 Pfam PF00501 AMP-binding enzyme 14 392 5.5E-89 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AP3564_09490 69bebdd71cabb269d4fbeec10485b44e 484 Gene3D G3DSA:3.40.50.12780 3 389 3.1E-123 T 13-10-2018 AP3564_09490 69bebdd71cabb269d4fbeec10485b44e 484 Gene3D G3DSA:3.30.300.310 390 484 3.0E-33 T 13-10-2018 AP3564_09490 69bebdd71cabb269d4fbeec10485b44e 484 Pfam PF13193 AMP-binding enzyme C-terminal domain 401 474 3.6E-19 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AP3564_09490 69bebdd71cabb269d4fbeec10485b44e 484 SUPERFAMILY SSF56801 8 483 1.44E-139 T 13-10-2018 AP3564_09490 69bebdd71cabb269d4fbeec10485b44e 484 TIGRFAM TIGR01923 menE: O-succinylbenzoate-CoA ligase 33 480 1.1E-150 T 13-10-2018 IPR010192 2-succinylbenzoate--CoA ligase GO:0005524|GO:0008756|GO:0009234 KEGG: 00130+6.2.1.26|MetaCyc: PWY-5837 AP3564_00410 b67030547eadf33d619363f1e774e8cd 471 Pfam PF03929 PepSY-associated TM region 28 410 4.2E-69 T 13-10-2018 IPR005625 PepSY-associated TM protein AP3564_00410 b67030547eadf33d619363f1e774e8cd 471 Pfam PF03413 Peptidase propeptide and YPEB domain 293 357 7.9E-4 T 13-10-2018 IPR025711 PepSY domain AP3564_00410 b67030547eadf33d619363f1e774e8cd 471 Pfam PF14358 Domain of unknown function (DUF4405) 168 222 2.0E-5 T 13-10-2018 IPR025517 Domain of unknown function DUF4405 AP3564_14330 6cf05463583f5261c1fefeae1cbff86c 188 Pfam PF00005 ABC transporter 23 170 7.7E-39 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_14330 6cf05463583f5261c1fefeae1cbff86c 188 Gene3D G3DSA:3.40.50.300 1 187 1.4E-59 T 13-10-2018 AP3564_14330 6cf05463583f5261c1fefeae1cbff86c 188 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_14330 6cf05463583f5261c1fefeae1cbff86c 188 SUPERFAMILY SSF52540 1 183 2.92E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_14330 6cf05463583f5261c1fefeae1cbff86c 188 SMART SM00382 31 188 1.8E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_08650 35c91dc33fd2b531f7d7ccbbb3ff6b77 441 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 196 416 3.2E-48 T 13-10-2018 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 AP3564_08650 35c91dc33fd2b531f7d7ccbbb3ff6b77 441 Gene3D G3DSA:3.90.110.10 169 441 3.7E-89 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AP3564_08650 35c91dc33fd2b531f7d7ccbbb3ff6b77 441 PRINTS PR00732 Glycosyl hydrolase family 4 signature 192 204 2.2E-37 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AP3564_08650 35c91dc33fd2b531f7d7ccbbb3ff6b77 441 PRINTS PR00732 Glycosyl hydrolase family 4 signature 5 20 2.2E-37 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AP3564_08650 35c91dc33fd2b531f7d7ccbbb3ff6b77 441 PRINTS PR00732 Glycosyl hydrolase family 4 signature 75 91 2.2E-37 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AP3564_08650 35c91dc33fd2b531f7d7ccbbb3ff6b77 441 PRINTS PR00732 Glycosyl hydrolase family 4 signature 96 109 2.2E-37 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AP3564_08650 35c91dc33fd2b531f7d7ccbbb3ff6b77 441 PRINTS PR00732 Glycosyl hydrolase family 4 signature 139 156 2.2E-37 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AP3564_08650 35c91dc33fd2b531f7d7ccbbb3ff6b77 441 PRINTS PR00732 Glycosyl hydrolase family 4 signature 110 130 2.2E-37 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AP3564_08650 35c91dc33fd2b531f7d7ccbbb3ff6b77 441 Pfam PF02056 Family 4 glycosyl hydrolase 6 175 4.2E-45 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AP3564_08650 35c91dc33fd2b531f7d7ccbbb3ff6b77 441 SUPERFAMILY SSF51735 3 163 2.23E-46 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_08650 35c91dc33fd2b531f7d7ccbbb3ff6b77 441 Gene3D G3DSA:3.40.50.720 1 167 3.5E-54 T 13-10-2018 AP3564_08650 35c91dc33fd2b531f7d7ccbbb3ff6b77 441 SUPERFAMILY SSF56327 184 440 9.87E-71 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AP3564_13685 8bf2deea31f1e56babfd3133163c0ce3 562 SMART SM00642 13 420 3.7E-191 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AP3564_13685 8bf2deea31f1e56babfd3133163c0ce3 562 SUPERFAMILY SSF51445 4 478 1.47E-172 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily AP3564_13685 8bf2deea31f1e56babfd3133163c0ce3 562 Pfam PF16657 Maltogenic Amylase, C-terminal domain 481 555 7.0E-7 T 13-10-2018 IPR032091 Maltogenic Amylase, C-terminal AP3564_13685 8bf2deea31f1e56babfd3133163c0ce3 562 Gene3D G3DSA:2.60.40.1180 482 560 7.0E-28 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta AP3564_13685 8bf2deea31f1e56babfd3133163c0ce3 562 Gene3D G3DSA:3.20.20.80 5 473 3.9E-224 T 13-10-2018 AP3564_13685 8bf2deea31f1e56babfd3133163c0ce3 562 Pfam PF00128 Alpha amylase, catalytic domain 28 377 2.4E-136 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AP3564_13685 8bf2deea31f1e56babfd3133163c0ce3 562 SUPERFAMILY SSF51011 481 559 9.12E-20 T 13-10-2018 AP3564_13685 8bf2deea31f1e56babfd3133163c0ce3 562 Gene3D G3DSA:3.90.400.10 105 174 3.9E-224 T 13-10-2018 AP3564_03770 fa36465fd3907fe984c6fdc568b538a0 128 Pfam PF00436 Single-strand binding protein family 2 103 3.7E-34 T 13-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 AP3564_03770 fa36465fd3907fe984c6fdc568b538a0 128 Gene3D G3DSA:2.40.50.140 1 112 5.9E-44 T 13-10-2018 AP3564_03770 fa36465fd3907fe984c6fdc568b538a0 128 Hamap MF_00984 Single-stranded DNA-binding protein. 2 107 33.413 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 AP3564_03770 fa36465fd3907fe984c6fdc568b538a0 128 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 2 108 9.5E-37 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 AP3564_03770 fa36465fd3907fe984c6fdc568b538a0 128 PIRSF PIRSF002070 1 128 4.7E-37 T 13-10-2018 AP3564_03770 fa36465fd3907fe984c6fdc568b538a0 128 SUPERFAMILY SSF50249 2 108 1.44E-42 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_15640 58fb9be685920be5ba1b095cf0aaef31 491 SUPERFAMILY SSF51569 4 285 9.71E-45 T 13-10-2018 AP3564_15640 58fb9be685920be5ba1b095cf0aaef31 491 Gene3D G3DSA:3.20.20.70 1 456 1.8E-98 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_15640 58fb9be685920be5ba1b095cf0aaef31 491 Pfam PF00682 HMGL-like 3 273 1.2E-23 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 AP3564_15640 58fb9be685920be5ba1b095cf0aaef31 491 SUPERFAMILY SSF89000 301 437 1.26E-24 T 13-10-2018 AP3564_15640 58fb9be685920be5ba1b095cf0aaef31 491 Pfam PF02436 Conserved carboxylase domain 297 436 1.4E-22 T 13-10-2018 IPR003379 Carboxylase, conserved domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 AP3564_14250 d3766cf8235cb09583efdcdc10040fd6 547 SUPERFAMILY SSF56801 5 539 1.96E-164 T 13-10-2018 AP3564_14250 d3766cf8235cb09583efdcdc10040fd6 547 Pfam PF00501 AMP-binding enzyme 10 442 6.2E-115 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AP3564_14250 d3766cf8235cb09583efdcdc10040fd6 547 Pfam PF13193 AMP-binding enzyme C-terminal domain 451 526 1.7E-18 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AP3564_14250 d3766cf8235cb09583efdcdc10040fd6 547 Gene3D G3DSA:3.40.50.12780 1 432 8.9E-127 T 13-10-2018 AP3564_14250 d3766cf8235cb09583efdcdc10040fd6 547 ProSitePatterns PS00455 Putative AMP-binding domain signature. 192 203 - T 13-10-2018 IPR020845 AMP-binding, conserved site AP3564_14250 d3766cf8235cb09583efdcdc10040fd6 547 Gene3D G3DSA:3.30.300.310 438 542 9.4E-36 T 13-10-2018 AP3564_01670 cc4b16e0d46e6699dd2224e6208985bc 296 Gene3D G3DSA:1.10.1670.40 102 286 5.4E-49 T 13-10-2018 AP3564_01670 cc4b16e0d46e6699dd2224e6208985bc 296 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 126 274 3.3E-21 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AP3564_01670 cc4b16e0d46e6699dd2224e6208985bc 296 Gene3D G3DSA:1.10.340.30 117 236 5.4E-49 T 13-10-2018 AP3564_01670 cc4b16e0d46e6699dd2224e6208985bc 296 SUPERFAMILY SSF48150 108 288 1.92E-40 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 AP3564_01670 cc4b16e0d46e6699dd2224e6208985bc 296 SMART SM00478 129 289 3.1E-26 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AP3564_18990 2c113a05e94086e912570750a33cf166 265 SUPERFAMILY SSF69618 9 261 1.31E-58 T 13-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AP3564_18990 2c113a05e94086e912570750a33cf166 265 Gene3D G3DSA:3.40.50.10090 6 138 2.6E-26 T 13-10-2018 AP3564_18990 2c113a05e94086e912570750a33cf166 265 Pfam PF02602 Uroporphyrinogen-III synthase HemD 23 254 3.0E-51 T 13-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AP3564_18990 2c113a05e94086e912570750a33cf166 265 Gene3D G3DSA:3.40.50.10090 153 261 1.1E-18 T 13-10-2018 AP3564_17905 a79a80ce159e9549c5bf38d48ea0a218 170 TIGRFAM TIGR02833 spore_III_AB: stage III sporulation protein AB 2 170 1.1E-61 T 13-10-2018 IPR014198 Stage III sporulation protein AB AP3564_17905 a79a80ce159e9549c5bf38d48ea0a218 170 PIRSF PIRSF021435 1 170 2.1E-61 T 13-10-2018 IPR014198 Stage III sporulation protein AB AP3564_17905 a79a80ce159e9549c5bf38d48ea0a218 170 Pfam PF09548 Stage III sporulation protein AB (spore_III_AB) 2 170 1.5E-49 T 13-10-2018 IPR014198 Stage III sporulation protein AB AP3564_15940 d0907e2d05b97d4a7d9a1111a8d148ed 196 Gene3D G3DSA:3.40.50.1950 1 196 2.0E-59 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 AP3564_15940 d0907e2d05b97d4a7d9a1111a8d148ed 196 SUPERFAMILY SSF52507 4 182 1.19E-31 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 AP3564_15940 d0907e2d05b97d4a7d9a1111a8d148ed 196 PIRSF PIRSF001390 1 196 7.6E-82 T 13-10-2018 IPR014214 Dipicolinic acid synthetase, subunit B AP3564_15940 d0907e2d05b97d4a7d9a1111a8d148ed 196 Pfam PF02441 Flavoprotein 6 159 7.1E-18 T 13-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 AP3564_15940 d0907e2d05b97d4a7d9a1111a8d148ed 196 TIGRFAM TIGR02852 spore_dpaB: dipicolinic acid synthetase, B subunit 6 192 1.2E-101 T 13-10-2018 IPR014214 Dipicolinic acid synthetase, subunit B AP3564_09110 445389847cd73fea88cd7d0bbcf81a5d 404 SUPERFAMILY SSF51905 152 338 3.53E-23 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_09110 445389847cd73fea88cd7d0bbcf81a5d 404 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 324 6.4E-47 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AP3564_09110 445389847cd73fea88cd7d0bbcf81a5d 404 Gene3D G3DSA:3.50.50.100 1 404 2.4E-146 T 13-10-2018 AP3564_09110 445389847cd73fea88cd7d0bbcf81a5d 404 SUPERFAMILY SSF51905 3 209 3.16E-30 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_09110 445389847cd73fea88cd7d0bbcf81a5d 404 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 158 176 1.7E-7 T 13-10-2018 AP3564_09110 445389847cd73fea88cd7d0bbcf81a5d 404 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 100 118 1.7E-7 T 13-10-2018 AP3564_09110 445389847cd73fea88cd7d0bbcf81a5d 404 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 1.7E-7 T 13-10-2018 AP3564_06690 d6875ecff635680f48cdfa98e52cc997 270 Gene3D G3DSA:1.10.3720.10 1 261 3.0E-62 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_06690 d6875ecff635680f48cdfa98e52cc997 270 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 262 9.5E-18 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AP3564_06690 d6875ecff635680f48cdfa98e52cc997 270 SUPERFAMILY SSF161098 4 270 2.9E-67 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_00495 f4a5ac789ff25e00336eb0017208af98 378 Gene3D G3DSA:3.60.110.10 3 292 4.2E-101 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AP3564_00495 f4a5ac789ff25e00336eb0017208af98 378 Pfam PF00795 Carbon-nitrogen hydrolase 10 286 3.1E-54 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 AP3564_00495 f4a5ac789ff25e00336eb0017208af98 378 SUPERFAMILY SSF56317 7 308 2.09E-68 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AP3564_13925 67d264bfb4cbaa3037fc0e5bf8c422e0 176 ProSitePatterns PS00194 Thioredoxin family active site. 66 84 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AP3564_13925 67d264bfb4cbaa3037fc0e5bf8c422e0 176 Pfam PF00578 AhpC/TSA family 39 157 2.3E-35 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AP3564_13925 67d264bfb4cbaa3037fc0e5bf8c422e0 176 Gene3D G3DSA:3.40.30.10 17 176 3.5E-55 T 13-10-2018 AP3564_13925 67d264bfb4cbaa3037fc0e5bf8c422e0 176 SUPERFAMILY SSF52833 37 173 1.22E-47 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AP3564_14375 a6afa74987b78328002d9936f6bf4c00 380 SUPERFAMILY SSF53383 4 376 3.46E-75 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_14375 a6afa74987b78328002d9936f6bf4c00 380 Gene3D G3DSA:3.90.1150.10 15 367 1.3E-84 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_14375 a6afa74987b78328002d9936f6bf4c00 380 Gene3D G3DSA:3.40.640.10 30 287 1.3E-84 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_14375 a6afa74987b78328002d9936f6bf4c00 380 Pfam PF00266 Aminotransferase class-V 42 365 5.5E-47 T 13-10-2018 IPR000192 Aminotransferase class V domain AP3564_14375 a6afa74987b78328002d9936f6bf4c00 380 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 201 221 - T 13-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site AP3564_00720 312c90cf9ad092cdf5f9ad8bef227ca8 441 Pfam PF00860 Permease family 16 402 1.9E-48 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 AP3564_00720 312c90cf9ad092cdf5f9ad8bef227ca8 441 PIRSF PIRSF005353 1 441 4.1E-173 T 13-10-2018 IPR026033 Purine permease PbuG-like AP3564_11485 b590244d65d3163545b24edf2fe73f89 169 Gene3D G3DSA:1.10.1760.20 1 161 1.3E-16 T 13-10-2018 AP3564_01375 4d227eb8e70387be6deb5c1bba37dfef 175 Pfam PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family 53 148 9.4E-12 T 13-10-2018 IPR024453 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family AP3564_01375 4d227eb8e70387be6deb5c1bba37dfef 175 SUPERFAMILY SSF54001 39 171 1.91E-23 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily AP3564_01375 4d227eb8e70387be6deb5c1bba37dfef 175 Gene3D G3DSA:3.90.1720.10 35 154 4.0E-9 T 13-10-2018 AP3564_12315 063f63a473014c3a24fa465d5c6b1cae 145 Pfam PF14101 Domain of unknown function (DUF4275) 1 132 3.0E-57 T 13-10-2018 IPR025454 Protein of unknown function DUF4275 AP3564_09040 de3523934db6b3d924353e933e0635dc 255 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 8 228 9.0E-45 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA AP3564_09040 de3523934db6b3d924353e933e0635dc 255 Pfam PF13242 HAD-hyrolase-like 179 251 2.2E-19 T 13-10-2018 AP3564_09040 de3523934db6b3d924353e933e0635dc 255 SUPERFAMILY SSF56784 3 252 6.1E-72 T 13-10-2018 IPR036412 HAD-like superfamily AP3564_09040 de3523934db6b3d924353e933e0635dc 255 Gene3D G3DSA:3.40.50.1000 72 180 1.9E-87 T 13-10-2018 IPR023214 HAD superfamily AP3564_09040 de3523934db6b3d924353e933e0635dc 255 Pfam PF13344 Haloacid dehalogenase-like hydrolase 8 106 6.1E-29 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA AP3564_09040 de3523934db6b3d924353e933e0635dc 255 Gene3D G3DSA:3.40.50.1000 6 245 1.9E-87 T 13-10-2018 IPR023214 HAD superfamily AP3564_09040 de3523934db6b3d924353e933e0635dc 255 PIRSF PIRSF000915 1 254 4.9E-65 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA AP3564_09040 de3523934db6b3d924353e933e0635dc 255 TIGRFAM TIGR01457 HAD-SF-IIA-hyp2: HAD hydrolase, TIGR01457 family 4 252 1.9E-121 T 13-10-2018 IPR006354 HAD-superfamily hydrolase, subfamily IIA, hypothetical 1 AP3564_12255 cc627456618eba336367b6755fb12cfb 108 SUPERFAMILY SSF101386 36 94 2.43E-6 T 13-10-2018 AP3564_12960 513b6a711dbcd5d1a50d931d57995247 104 ProDom PD030115 YODL GK1575 12 104 2.0E-26 T 13-10-2018 AP3564_12960 513b6a711dbcd5d1a50d931d57995247 104 Pfam PF14191 YodL-like 28 89 2.9E-6 T 13-10-2018 IPR025923 YodL-like AP3564_03145 b9a69f66a313facb70419255e9a312d4 403 PIRSF PIRSF037259 2 403 9.7E-120 T 13-10-2018 IPR010288 Bacterial ABC transporter EcsB GO:0016021 AP3564_03145 b9a69f66a313facb70419255e9a312d4 403 Pfam PF05975 Bacterial ABC transporter protein EcsB 6 381 4.7E-116 T 13-10-2018 IPR010288 Bacterial ABC transporter EcsB GO:0016021 AP3564_07170 ac491d6eaefd96e5351cb51948b9e0e0 425 Pfam PF02371 Transposase IS116/IS110/IS902 family 287 371 2.8E-23 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_07170 ac491d6eaefd96e5351cb51948b9e0e0 425 Pfam PF01548 Transposase 19 179 3.9E-35 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_07650 5e8349d8afba45c0e22695b2022242e2 225 SUPERFAMILY SSF46894 152 223 8.5E-25 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AP3564_07650 5e8349d8afba45c0e22695b2022242e2 225 Gene3D G3DSA:3.40.50.12740 5 222 2.5E-73 T 13-10-2018 AP3564_07650 5e8349d8afba45c0e22695b2022242e2 225 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 162 176 2.8E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_07650 5e8349d8afba45c0e22695b2022242e2 225 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 176 192 2.8E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_07650 5e8349d8afba45c0e22695b2022242e2 225 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 192 204 2.8E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_07650 5e8349d8afba45c0e22695b2022242e2 225 SUPERFAMILY SSF52172 4 137 2.13E-37 T 13-10-2018 IPR011006 CheY-like superfamily AP3564_07650 5e8349d8afba45c0e22695b2022242e2 225 ProSitePatterns PS00622 LuxR-type HTH domain signature. 176 203 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_07650 5e8349d8afba45c0e22695b2022242e2 225 SMART SM00421 159 216 5.1E-28 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_07650 5e8349d8afba45c0e22695b2022242e2 225 Pfam PF00196 Bacterial regulatory proteins, luxR family 161 216 3.1E-24 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AP3564_07650 5e8349d8afba45c0e22695b2022242e2 225 Pfam PF00072 Response regulator receiver domain 7 119 5.1E-33 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_07650 5e8349d8afba45c0e22695b2022242e2 225 SMART SM00448 5 118 8.2E-33 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_11765 800d30057d16133ffd7ae30d0a529b2d 364 Pfam PF03845 Spore germination protein 10 323 2.0E-75 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 AP3564_11765 800d30057d16133ffd7ae30d0a529b2d 364 TIGRFAM TIGR00912 2A0309: spore germination protein (amino acid permease) 9 362 2.5E-43 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 AP3564_02055 886635ba89ce95da9b49f06d2d483e75 302 Gene3D G3DSA:3.60.130.10 3 300 6.2E-93 T 13-10-2018 AP3564_02055 886635ba89ce95da9b49f06d2d483e75 302 SUPERFAMILY SSF51197 17 295 7.14E-89 T 13-10-2018 AP3564_02055 886635ba89ce95da9b49f06d2d483e75 302 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 17 281 1.5E-52 T 13-10-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 AP3564_06105 2e4ad4e66d0977f2e41ab6220d41c51b 213 Pfam PF01810 LysE type translocator 13 201 1.8E-31 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AP3564_05055 cca5fec93e448239b21fba687f6f5a8e 109 SUPERFAMILY SSF54913 1 107 7.56E-13 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta AP3564_05055 cca5fec93e448239b21fba687f6f5a8e 109 Pfam PF06153 Cyclic-di-AMP receptor 1 109 2.3E-53 T 13-10-2018 IPR010375 Cyclic-di-AMP receptor AP3564_05055 cca5fec93e448239b21fba687f6f5a8e 109 Gene3D G3DSA:3.30.70.120 1 103 2.8E-44 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal AP3564_16050 f6ad2575a38a8e35451d70548c75518d 185 Gene3D G3DSA:3.30.1360.40 31 105 1.1E-72 T 13-10-2018 AP3564_16050 f6ad2575a38a8e35451d70548c75518d 185 SUPERFAMILY SSF55194 2 185 2.22E-74 T 13-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 AP3564_16050 f6ad2575a38a8e35451d70548c75518d 185 Pfam PF01765 Ribosome recycling factor 20 183 8.0E-68 T 13-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 AP3564_16050 f6ad2575a38a8e35451d70548c75518d 185 Gene3D G3DSA:1.10.132.20 12 182 1.1E-72 T 13-10-2018 AP3564_16050 f6ad2575a38a8e35451d70548c75518d 185 TIGRFAM TIGR00496 frr: ribosome recycling factor 10 185 1.5E-78 T 13-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 AP3564_16050 f6ad2575a38a8e35451d70548c75518d 185 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 185 28.996 T 13-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 AP3564_08510 5ceeb98e59190c715a21872a3db1cb04 305 Pfam PF00149 Calcineurin-like phosphoesterase 35 227 3.5E-14 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AP3564_08510 5ceeb98e59190c715a21872a3db1cb04 305 SUPERFAMILY SSF56300 34 228 1.88E-29 T 13-10-2018 AP3564_08510 5ceeb98e59190c715a21872a3db1cb04 305 Gene3D G3DSA:3.60.21.10 35 262 1.2E-17 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like AP3564_00220 54709b1b3ff46c01715952c487664659 285 Gene3D G3DSA:3.20.20.140 22 281 1.8E-31 T 13-10-2018 AP3564_00220 54709b1b3ff46c01715952c487664659 285 Pfam PF04909 Amidohydrolase 64 280 2.9E-16 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AP3564_00220 54709b1b3ff46c01715952c487664659 285 SUPERFAMILY SSF51556 10 280 4.98E-30 T 13-10-2018 IPR032466 Metal-dependent hydrolase AP3564_09725 481bcab12ad32e14b97fa9ea466cdabc 261 Pfam PF01636 Phosphotransferase enzyme family 40 215 7.0E-24 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase AP3564_09725 481bcab12ad32e14b97fa9ea466cdabc 261 Gene3D G3DSA:3.90.1200.10 75 256 5.8E-22 T 13-10-2018 AP3564_09725 481bcab12ad32e14b97fa9ea466cdabc 261 SUPERFAMILY SSF56112 3 227 3.46E-32 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily AP3564_16220 f36d9205e16e3e1b1f0e052f698bc2c9 147 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site AP3564_16220 f36d9205e16e3e1b1f0e052f698bc2c9 147 Pfam PF00460 Flagella basal body rod protein 7 35 1.3E-8 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AP3564_16220 f36d9205e16e3e1b1f0e052f698bc2c9 147 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 4 147 1.1E-51 T 13-10-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 AP3564_16220 f36d9205e16e3e1b1f0e052f698bc2c9 147 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 97 144 1.2E-10 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain AP3564_14240 4bccfec8418eb5936f3d7121c52d84cc 215 SUPERFAMILY SSF48498 77 192 1.47E-26 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AP3564_14240 4bccfec8418eb5936f3d7121c52d84cc 215 Gene3D G3DSA:1.10.10.60 6 50 2.7E-18 T 13-10-2018 AP3564_14240 4bccfec8418eb5936f3d7121c52d84cc 215 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 53 1.5E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_14240 4bccfec8418eb5936f3d7121c52d84cc 215 SUPERFAMILY SSF46689 5 82 2.87E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_14240 4bccfec8418eb5936f3d7121c52d84cc 215 Gene3D G3DSA:1.10.357.10 51 191 3.1E-37 T 13-10-2018 AP3564_14240 4bccfec8418eb5936f3d7121c52d84cc 215 Pfam PF08359 YsiA-like protein, C-terminal region 64 180 1.4E-5 T 13-10-2018 IPR013570 Transcription regulator YsiA, C-terminal AP3564_14240 4bccfec8418eb5936f3d7121c52d84cc 215 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 54 1.9E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_14240 4bccfec8418eb5936f3d7121c52d84cc 215 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 1.9E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_15915 0a4cfef550299631af113b422f09e427 244 Gene3D G3DSA:3.90.226.10 15 220 7.5E-33 T 13-10-2018 AP3564_15915 0a4cfef550299631af113b422f09e427 244 Pfam PF00574 Clp protease 42 218 9.0E-36 T 13-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA AP3564_15915 0a4cfef550299631af113b422f09e427 244 SUPERFAMILY SSF52096 27 226 1.25E-39 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AP3564_07770 8583d01cc459954f994dad0efceffd81 371 Pfam PF14294 Domain of unknown function (DUF4372) 8 76 6.3E-8 T 13-10-2018 IPR025399 Domain of unknown function DUF4372 AP3564_07770 8583d01cc459954f994dad0efceffd81 371 Pfam PF01609 Transposase DDE domain 121 329 1.4E-29 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_07770 8583d01cc459954f994dad0efceffd81 371 SUPERFAMILY SSF53098 88 359 8.34E-35 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_05205 d13d1e7900de55b1dfe87d8b40dbb974 373 Pfam PF12323 Helix-turn-helix domain 2 48 1.4E-24 T 13-10-2018 IPR021027 Transposase, putative, helix-turn-helix domain AP3564_05205 d13d1e7900de55b1dfe87d8b40dbb974 373 TIGRFAM TIGR01766 tspaseT_teng_C: transposase, IS605 OrfB family 243 316 1.0E-15 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal AP3564_05205 d13d1e7900de55b1dfe87d8b40dbb974 373 Pfam PF01385 Probable transposase 165 275 2.0E-28 T 13-10-2018 IPR001959 Probable transposase, IS891/IS1136/IS1341 AP3564_05205 d13d1e7900de55b1dfe87d8b40dbb974 373 Pfam PF07282 Putative transposase DNA-binding domain 289 359 1.2E-25 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal AP3564_16100 8a9384fd3fa95a1c09eaef808addef5d 350 PIRSF PIRSF000876 2 350 6.2E-129 T 13-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AP3564_16100 8a9384fd3fa95a1c09eaef808addef5d 350 Pfam PF01339 CheB methylesterase 166 343 5.4E-54 T 13-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AP3564_16100 8a9384fd3fa95a1c09eaef808addef5d 350 Gene3D G3DSA:3.40.50.180 161 350 1.7E-66 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal AP3564_16100 8a9384fd3fa95a1c09eaef808addef5d 350 SUPERFAMILY SSF52738 163 349 1.14E-58 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal AP3564_16100 8a9384fd3fa95a1c09eaef808addef5d 350 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 4 350 36.339 T 13-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AP3564_16100 8a9384fd3fa95a1c09eaef808addef5d 350 Pfam PF00072 Response regulator receiver domain 6 110 3.8E-21 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_16100 8a9384fd3fa95a1c09eaef808addef5d 350 SUPERFAMILY SSF52172 2 113 2.99E-27 T 13-10-2018 IPR011006 CheY-like superfamily AP3564_16100 8a9384fd3fa95a1c09eaef808addef5d 350 Gene3D G3DSA:3.40.50.2300 2 160 2.5E-31 T 13-10-2018 AP3564_16100 8a9384fd3fa95a1c09eaef808addef5d 350 SMART SM00448 4 127 3.6E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_12170 2bf17d6f2273ff65bab31887d25a1c2a 232 TIGRFAM TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 3 223 1.6E-43 T 13-10-2018 IPR010089 Flavoprotein WrbA-like GO:0003955|GO:0010181 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 AP3564_12170 2bf17d6f2273ff65bab31887d25a1c2a 232 Pfam PF02525 Flavodoxin-like fold 3 149 1.9E-12 T 13-10-2018 IPR003680 Flavodoxin-like fold AP3564_12170 2bf17d6f2273ff65bab31887d25a1c2a 232 Gene3D G3DSA:3.40.50.360 1 232 5.4E-65 T 13-10-2018 IPR029039 Flavoprotein-like superfamily AP3564_12170 2bf17d6f2273ff65bab31887d25a1c2a 232 SUPERFAMILY SSF52218 1 223 3.69E-44 T 13-10-2018 IPR029039 Flavoprotein-like superfamily AP3564_02160 08f464b557787d79ddd155ec72d3b001 162 Pfam PF07853 Protein of unknown function (DUF1648) 21 62 7.3E-15 T 13-10-2018 IPR012867 Domain of unknown function DUF1648 AP3564_17935 99d0c9cdac8603074455d15105021045 312 Pfam PF07136 Protein of unknown function (DUF1385) 55 298 3.1E-79 T 13-10-2018 IPR010787 Protein of unknown function DUF1385 AP3564_17935 99d0c9cdac8603074455d15105021045 312 ProDom PD131510 MEMBRANE METAL-DEPENDENT ENZYME YQHQ SPANNING SIMILAR LIPOPROTEIN LIPOPROTEIN PROTEIN HYP001 55 296 1.0E-96 T 13-10-2018 IPR010787 Protein of unknown function DUF1385 AP3564_12430 b1ba2d2f738759ae2f3e17f4ffe22461 132 SMART SM00345 19 78 2.2E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_12430 b1ba2d2f738759ae2f3e17f4ffe22461 132 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 78 3.7E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AP3564_12430 b1ba2d2f738759ae2f3e17f4ffe22461 132 Gene3D G3DSA:1.10.10.10 12 130 5.2E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_12430 b1ba2d2f738759ae2f3e17f4ffe22461 132 SUPERFAMILY SSF46785 10 82 6.09E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_18935 bf349635ea766d9490cb1e6208a6fc93 340 Pfam PF06723 MreB/Mbl protein 7 332 7.3E-151 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AP3564_18935 bf349635ea766d9490cb1e6208a6fc93 340 SUPERFAMILY SSF53067 8 144 3.44E-38 T 13-10-2018 AP3564_18935 bf349635ea766d9490cb1e6208a6fc93 340 Gene3D G3DSA:3.30.420.40 9 324 3.1E-131 T 13-10-2018 AP3564_18935 bf349635ea766d9490cb1e6208a6fc93 340 SUPERFAMILY SSF53067 147 330 1.96E-50 T 13-10-2018 AP3564_18935 bf349635ea766d9490cb1e6208a6fc93 340 Gene3D G3DSA:3.90.640.10 183 256 3.1E-131 T 13-10-2018 AP3564_18935 bf349635ea766d9490cb1e6208a6fc93 340 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 297 323 7.9E-62 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AP3564_18935 bf349635ea766d9490cb1e6208a6fc93 340 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 184 204 7.9E-62 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AP3564_18935 bf349635ea766d9490cb1e6208a6fc93 340 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 44 62 7.9E-62 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AP3564_18935 bf349635ea766d9490cb1e6208a6fc93 340 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 64 87 7.9E-62 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AP3564_18935 bf349635ea766d9490cb1e6208a6fc93 340 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 129 148 7.9E-62 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AP3564_18935 bf349635ea766d9490cb1e6208a6fc93 340 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 7 333 8.9E-162 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AP3564_18935 bf349635ea766d9490cb1e6208a6fc93 340 Gene3D G3DSA:3.30.420.40 151 314 3.1E-131 T 13-10-2018 AP3564_06525 9adc3aaf200de7618df0c01046f0bfdc 453 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 16 431 2.7E-142 T 13-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 AP3564_06525 9adc3aaf200de7618df0c01046f0bfdc 453 Pfam PF05525 Branched-chain amino acid transport protein 12 443 7.6E-157 T 13-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 AP3564_09190 57bea5267d35d5a3c42e9d00dd274810 323 Pfam PF01548 Transposase 9 153 1.6E-26 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_09190 57bea5267d35d5a3c42e9d00dd274810 323 Pfam PF02371 Transposase IS116/IS110/IS902 family 253 323 2.7E-19 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_11610 948d7dd103b6feb0e0b0a1328edb109a 589 SMART SM00729 176 379 2.8E-19 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AP3564_11610 948d7dd103b6feb0e0b0a1328edb109a 589 Pfam PF02310 B12 binding domain 9 122 5.1E-20 T 13-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 AP3564_11610 948d7dd103b6feb0e0b0a1328edb109a 589 Gene3D G3DSA:3.80.30.20 174 366 1.8E-18 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe AP3564_11610 948d7dd103b6feb0e0b0a1328edb109a 589 SUPERFAMILY SSF102114 172 368 1.11E-37 T 13-10-2018 AP3564_11610 948d7dd103b6feb0e0b0a1328edb109a 589 Pfam PF13311 Protein of unknown function (DUF4080) 372 556 2.8E-48 T 13-10-2018 IPR025288 Domain of unknown function DUF4080 AP3564_11610 948d7dd103b6feb0e0b0a1328edb109a 589 Gene3D G3DSA:3.40.50.280 14 136 2.3E-10 T 13-10-2018 AP3564_11610 948d7dd103b6feb0e0b0a1328edb109a 589 SUPERFAMILY SSF52242 42 143 2.51E-7 T 13-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 AP3564_11610 948d7dd103b6feb0e0b0a1328edb109a 589 Pfam PF04055 Radical SAM superfamily 180 344 1.3E-15 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AP3564_06310 9677e906d459e979ba019058d79796d1 256 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 31 251 1.5E-69 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AP3564_06310 9677e906d459e979ba019058d79796d1 256 Gene3D G3DSA:3.40.190.10 116 208 1.9E-72 T 13-10-2018 AP3564_06310 9677e906d459e979ba019058d79796d1 256 SUPERFAMILY SSF53850 1 252 3.0E-69 T 13-10-2018 AP3564_06310 9677e906d459e979ba019058d79796d1 256 Gene3D G3DSA:3.40.190.10 31 250 1.9E-72 T 13-10-2018 AP3564_06310 9677e906d459e979ba019058d79796d1 256 SMART SM00062 30 252 4.9E-74 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AP3564_06310 9677e906d459e979ba019058d79796d1 256 SMART SM00079 30 251 1.7E-4 T 13-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 AP3564_18385 ceea798538e86ae9bbfdf4015beed717 397 Pfam PF06898 Putative stage IV sporulation protein YqfD 8 388 3.5E-117 T 13-10-2018 IPR010690 Putative stage IV sporulation YqfD AP3564_18385 ceea798538e86ae9bbfdf4015beed717 397 PIRSF PIRSF029895 1 397 2.4E-144 T 13-10-2018 IPR010690 Putative stage IV sporulation YqfD AP3564_18385 ceea798538e86ae9bbfdf4015beed717 397 TIGRFAM TIGR02876 spore_yqfD: sporulation protein YqfD 7 389 1.9E-110 T 13-10-2018 IPR010690 Putative stage IV sporulation YqfD AP3564_14645 dc81bf210c4f83409e857277e4d3acf3 75 Gene3D G3DSA:3.30.110.40 1 68 4.0E-7 T 13-10-2018 IPR036868 TusA-like domain superfamily AP3564_14645 dc81bf210c4f83409e857277e4d3acf3 75 Pfam PF10006 Uncharacterized conserved protein (DUF2249) 3 68 2.1E-19 T 13-10-2018 IPR018720 Domain of unknown function DUF2249 AP3564_14645 dc81bf210c4f83409e857277e4d3acf3 75 SUPERFAMILY SSF64307 1 68 6.28E-15 T 13-10-2018 IPR036868 TusA-like domain superfamily AP3564_07545 76f94ce54e50a01c94701c16e679a346 316 Hamap MF_01140 Polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagU [tagU]. 10 309 49.634 T 13-10-2018 IPR023734 Polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagU AP3564_07545 76f94ce54e50a01c94701c16e679a346 316 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 85 228 1.4E-54 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain AP3564_07545 76f94ce54e50a01c94701c16e679a346 316 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 86 227 5.5E-51 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain AP3564_07545 76f94ce54e50a01c94701c16e679a346 316 Gene3D G3DSA:1.10.260.150 50 316 1.0E-95 T 13-10-2018 AP3564_02140 7197bb4970622befd8e2b2a3616837d8 108 SUPERFAMILY SSF103481 7 107 1.44E-11 T 13-10-2018 AP3564_02140 7197bb4970622befd8e2b2a3616837d8 108 Hamap MF_00010 UPF0060 membrane protein YnfA [ynfA]. 2 107 22.514 T 13-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 AP3564_02140 7197bb4970622befd8e2b2a3616837d8 108 Pfam PF02694 Uncharacterised BCR, YnfA/UPF0060 family 1 107 1.3E-43 T 13-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 AP3564_15650 01622fffcec85f29aa2369c1d20efe79 257 SUPERFAMILY SSF46785 7 77 5.98E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_15650 01622fffcec85f29aa2369c1d20efe79 257 Gene3D G3DSA:1.10.10.10 1 74 9.2E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_15650 01622fffcec85f29aa2369c1d20efe79 257 Pfam PF09339 IclR helix-turn-helix domain 10 59 6.0E-12 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AP3564_15650 01622fffcec85f29aa2369c1d20efe79 257 SUPERFAMILY SSF55781 65 256 5.43E-46 T 13-10-2018 AP3564_15650 01622fffcec85f29aa2369c1d20efe79 257 SMART SM00346 7 97 2.1E-14 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AP3564_15650 01622fffcec85f29aa2369c1d20efe79 257 Gene3D G3DSA:3.30.450.40 78 256 2.2E-53 T 13-10-2018 IPR029016 GAF-like domain superfamily AP3564_15650 01622fffcec85f29aa2369c1d20efe79 257 Pfam PF01614 Bacterial transcriptional regulator 125 251 1.8E-32 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal AP3564_10180 7a584ba810314f117f3fcf9ae68907d4 122 Hamap MF_01861 UPF0738 protein . 3 122 26.509 T 13-10-2018 IPR020908 Uncharacterised protein family UPF0738 AP3564_00460 5872f87846d5e04a738e00ec9977a242 148 PIRSF PIRSF011474 1 147 2.5E-42 T 13-10-2018 IPR009693 Glucitol operon activator AP3564_00460 5872f87846d5e04a738e00ec9977a242 148 Pfam PF06923 Glucitol operon activator protein (GutM) 4 109 1.4E-33 T 13-10-2018 IPR009693 Glucitol operon activator AP3564_19375 c79888efee283fa9084dc812c949bd41 129 Pfam PF04186 FxsA cytoplasmic membrane protein 7 111 5.8E-33 T 13-10-2018 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 AP3564_19730 ee89bf12351113093d5a5a9cc10b562c 422 Gene3D G3DSA:3.30.420.10 144 328 9.0E-21 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AP3564_19730 ee89bf12351113093d5a5a9cc10b562c 422 Pfam PF09299 Mu transposase, C-terminal 333 381 5.9E-7 T 13-10-2018 IPR015378 Transposase-like, Mu, C-terminal AP3564_19730 ee89bf12351113093d5a5a9cc10b562c 422 SUPERFAMILY SSF53098 149 314 6.58E-30 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_19730 ee89bf12351113093d5a5a9cc10b562c 422 SUPERFAMILY SSF46689 48 133 6.81E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_19730 ee89bf12351113093d5a5a9cc10b562c 422 Pfam PF00665 Integrase core domain 152 269 2.2E-22 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AP3564_03435 ee89bf12351113093d5a5a9cc10b562c 422 Gene3D G3DSA:3.30.420.10 144 328 9.0E-21 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AP3564_03435 ee89bf12351113093d5a5a9cc10b562c 422 Pfam PF09299 Mu transposase, C-terminal 333 381 5.9E-7 T 13-10-2018 IPR015378 Transposase-like, Mu, C-terminal AP3564_03435 ee89bf12351113093d5a5a9cc10b562c 422 SUPERFAMILY SSF53098 149 314 6.58E-30 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_03435 ee89bf12351113093d5a5a9cc10b562c 422 SUPERFAMILY SSF46689 48 133 6.81E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_03435 ee89bf12351113093d5a5a9cc10b562c 422 Pfam PF00665 Integrase core domain 152 269 2.2E-22 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AP3564_00085 ee89bf12351113093d5a5a9cc10b562c 422 Gene3D G3DSA:3.30.420.10 144 328 9.0E-21 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AP3564_00085 ee89bf12351113093d5a5a9cc10b562c 422 Pfam PF09299 Mu transposase, C-terminal 333 381 5.9E-7 T 13-10-2018 IPR015378 Transposase-like, Mu, C-terminal AP3564_00085 ee89bf12351113093d5a5a9cc10b562c 422 SUPERFAMILY SSF53098 149 314 6.58E-30 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_00085 ee89bf12351113093d5a5a9cc10b562c 422 SUPERFAMILY SSF46689 48 133 6.81E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_00085 ee89bf12351113093d5a5a9cc10b562c 422 Pfam PF00665 Integrase core domain 152 269 2.2E-22 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AP3564_11670 39b8a7097fd37aef34e1c2f8ad5256fa 243 Pfam PF02535 ZIP Zinc transporter 94 239 8.3E-16 T 13-10-2018 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 AP3564_17760 c72978ef423c60f0de47a6e61523f705 373 Gene3D G3DSA:3.30.70.360 177 288 1.3E-137 T 13-10-2018 AP3564_17760 c72978ef423c60f0de47a6e61523f705 373 Gene3D G3DSA:3.40.630.10 14 363 1.3E-137 T 13-10-2018 AP3564_17760 c72978ef423c60f0de47a6e61523f705 373 SUPERFAMILY SSF55031 182 288 1.7E-21 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain AP3564_17760 c72978ef423c60f0de47a6e61523f705 373 PIRSF PIRSF001123 263 373 2.8E-4 T 13-10-2018 IPR008007 Peptidase M42 AP3564_17760 c72978ef423c60f0de47a6e61523f705 373 PIRSF PIRSF001123 4 82 0.0021 T 13-10-2018 IPR008007 Peptidase M42 AP3564_17760 c72978ef423c60f0de47a6e61523f705 373 PIRSF PIRSF001123 80 181 1.8E-5 T 13-10-2018 IPR008007 Peptidase M42 AP3564_17760 c72978ef423c60f0de47a6e61523f705 373 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 105 143 - T 13-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AP3564_17760 c72978ef423c60f0de47a6e61523f705 373 TIGRFAM TIGR01883 PepT-like: peptidase T-like protein 6 367 8.7E-165 T 13-10-2018 IPR010162 Peptidase M20B, peptidase T-like AP3564_17760 c72978ef423c60f0de47a6e61523f705 373 Pfam PF07687 Peptidase dimerisation domain 180 274 7.8E-16 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain AP3564_17760 c72978ef423c60f0de47a6e61523f705 373 SUPERFAMILY SSF53187 5 372 4.02E-65 T 13-10-2018 AP3564_17760 c72978ef423c60f0de47a6e61523f705 373 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 72 81 - T 13-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AP3564_17760 c72978ef423c60f0de47a6e61523f705 373 Pfam PF01546 Peptidase family M20/M25/M40 74 368 1.6E-25 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 AP3564_11065 9a18c5d721fa8f181a07ace5e64d3c14 271 Gene3D G3DSA:3.60.21.10 44 249 4.6E-22 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like AP3564_11065 9a18c5d721fa8f181a07ace5e64d3c14 271 Pfam PF00149 Calcineurin-like phosphoesterase 46 166 2.4E-9 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AP3564_11065 9a18c5d721fa8f181a07ace5e64d3c14 271 SUPERFAMILY SSF56300 46 270 6.05E-32 T 13-10-2018 AP3564_08205 67e93ba8f4a5c2498e065f70782f15a1 161 Gene3D G3DSA:3.50.30.40 1 158 4.3E-60 T 13-10-2018 AP3564_08205 67e93ba8f4a5c2498e065f70782f15a1 161 TIGRFAM TIGR01935 NOT-MenG: RraA family 3 152 9.5E-56 T 13-10-2018 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 AP3564_08205 67e93ba8f4a5c2498e065f70782f15a1 161 Pfam PF03737 Aldolase/RraA 3 151 1.2E-41 T 13-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein AP3564_08205 67e93ba8f4a5c2498e065f70782f15a1 161 SUPERFAMILY SSF89562 3 156 1.09E-44 T 13-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily AP3564_11140 017a3c8d4f24a7e29bd191f8a0c357e9 78 SUPERFAMILY SSF47413 9 62 2.34E-5 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AP3564_14190 5bb4df643a693ad872bf84353930e17d 247 Pfam PF04909 Amidohydrolase 5 245 8.4E-17 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AP3564_14190 5bb4df643a693ad872bf84353930e17d 247 Gene3D G3DSA:3.20.20.140 1 246 1.1E-43 T 13-10-2018 AP3564_14190 5bb4df643a693ad872bf84353930e17d 247 SUPERFAMILY SSF51556 2 245 3.51E-43 T 13-10-2018 IPR032466 Metal-dependent hydrolase AP3564_14415 494e480dfc7e59e2dba2a68ee8f48795 103 SUPERFAMILY SSF46689 1 88 8.78E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_14415 494e480dfc7e59e2dba2a68ee8f48795 103 Pfam PF01527 Transposase 2 77 1.0E-14 T 13-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AP3564_02745 f210fa982a9e3340a0e453e38f1c81cb 130 SUPERFAMILY SSF54593 1 128 1.88E-29 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AP3564_02745 f210fa982a9e3340a0e453e38f1c81cb 130 Gene3D G3DSA:3.10.180.10 8 130 5.0E-34 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AP3564_02745 f210fa982a9e3340a0e453e38f1c81cb 130 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 3 126 2.3E-10 T 13-10-2018 IPR028973 PhnB-like AP3564_02065 6cdedb0cda1d7c1c0a2ea8364dd57ea9 275 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_02065 6cdedb0cda1d7c1c0a2ea8364dd57ea9 275 Pfam PF00005 ABC transporter 32 172 1.4E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_02065 6cdedb0cda1d7c1c0a2ea8364dd57ea9 275 Gene3D G3DSA:3.40.50.300 5 274 2.9E-64 T 13-10-2018 AP3564_02065 6cdedb0cda1d7c1c0a2ea8364dd57ea9 275 SUPERFAMILY SSF52540 15 226 1.82E-70 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_02065 6cdedb0cda1d7c1c0a2ea8364dd57ea9 275 SMART SM00382 41 222 9.7E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_17340 063ff7c269a9b1143eee131d756a8bed 207 Pfam PF02517 CAAX protease self-immunity 96 180 1.1E-10 T 13-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 AP3564_16070 2bd562a7e6d81f17215dc57baefe9500 159 ProDom PD177368 TRANSCRIPTION DNA-BINDING MOTILITY SWRB SWARMING YLXL REGULATION BH2428 2 156 1.0E-14 T 13-10-2018 AP3564_13970 24a2a76ccdf9facc65c7e1e892f68498 86 Gene3D G3DSA:1.20.58.1000 1 84 2.2E-23 T 13-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily AP3564_13970 24a2a76ccdf9facc65c7e1e892f68498 86 Pfam PF02583 Metal-sensitive transcriptional repressor 4 81 3.9E-24 T 13-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 AP3564_04110 c755a45515b547a142b67c2cd121a96e 225 TIGRFAM TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family 2 78 7.8E-44 T 13-10-2018 IPR014243 Transcription factor, RsfA AP3564_15290 880246c72cc8885fc6a2c4f0388336f6 135 Gene3D G3DSA:3.30.460.10 1 104 6.5E-21 T 13-10-2018 AP3564_15290 880246c72cc8885fc6a2c4f0388336f6 135 SUPERFAMILY SSF81301 9 105 4.28E-17 T 13-10-2018 AP3564_15290 880246c72cc8885fc6a2c4f0388336f6 135 Pfam PF01909 Nucleotidyltransferase domain 10 73 5.9E-8 T 13-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 AP3564_15155 880246c72cc8885fc6a2c4f0388336f6 135 Gene3D G3DSA:3.30.460.10 1 104 6.5E-21 T 13-10-2018 AP3564_15155 880246c72cc8885fc6a2c4f0388336f6 135 SUPERFAMILY SSF81301 9 105 4.28E-17 T 13-10-2018 AP3564_15155 880246c72cc8885fc6a2c4f0388336f6 135 Pfam PF01909 Nucleotidyltransferase domain 10 73 5.9E-8 T 13-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 AP3564_02240 9827816b37aa57a1e17bbae0753fe286 359 SUPERFAMILY SSF51735 1 161 8.68E-15 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_02240 9827816b37aa57a1e17bbae0753fe286 359 Gene3D G3DSA:3.40.50.720 2 117 3.2E-18 T 13-10-2018 AP3564_02240 9827816b37aa57a1e17bbae0753fe286 359 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 1 107 2.7E-11 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AP3564_02240 9827816b37aa57a1e17bbae0753fe286 359 Gene3D G3DSA:3.30.360.10 118 216 3.2E-18 T 13-10-2018 AP3564_14920 c20bc4fe49d32f1cc38b9bc7bc2d9486 389 Pfam PF01610 Transposase 150 381 6.7E-58 T 13-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain AP3564_14920 c20bc4fe49d32f1cc38b9bc7bc2d9486 389 Pfam PF13542 Helix-turn-helix domain of transposase family ISL3 89 138 3.6E-10 T 13-10-2018 IPR032877 Transposase IS204/IS1001/IS1096/IS1165, helix-turn-helix domain AP3564_14310 a6e510c00dc2f9ab1d72dddb28001f23 170 SUPERFAMILY SSF47240 21 157 1.72E-17 T 13-10-2018 IPR009078 Ferritin-like superfamily AP3564_14310 a6e510c00dc2f9ab1d72dddb28001f23 170 Gene3D G3DSA:1.20.1260.10 17 161 9.8E-11 T 13-10-2018 IPR012347 Ferritin-like AP3564_04520 f411d5eb9bbf53368c4e7dc3743ba6f9 475 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 39 271 4.8E-14 T 13-10-2018 AP3564_04520 f411d5eb9bbf53368c4e7dc3743ba6f9 475 SUPERFAMILY SSF51905 36 428 8.52E-30 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_04520 f411d5eb9bbf53368c4e7dc3743ba6f9 475 Gene3D G3DSA:3.50.50.60 25 300 4.8E-30 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_10745 8de7f88d6d40d880dc7066c3ea4ddb04 323 SUPERFAMILY SSF53613 2 320 1.03E-85 T 13-10-2018 IPR029056 Ribokinase-like AP3564_10745 8de7f88d6d40d880dc7066c3ea4ddb04 323 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 252 265 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AP3564_10745 8de7f88d6d40d880dc7066c3ea4ddb04 323 Gene3D G3DSA:3.40.1190.20 3 323 5.5E-105 T 13-10-2018 IPR029056 Ribokinase-like AP3564_10745 8de7f88d6d40d880dc7066c3ea4ddb04 323 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 34 58 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AP3564_10745 8de7f88d6d40d880dc7066c3ea4ddb04 323 Pfam PF00294 pfkB family carbohydrate kinase 2 312 1.8E-78 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB AP3564_16650 7d31331090e85031da9160b335f52087 123 PIRSF PIRSF018579 1 113 1.8E-45 T 13-10-2018 IPR009709 Protein of unknown function DUF1290 AP3564_16650 7d31331090e85031da9160b335f52087 123 Pfam PF06947 Protein of unknown function (DUF1290) 22 107 1.9E-35 T 13-10-2018 IPR009709 Protein of unknown function DUF1290 AP3564_08710 172da03c9ffb6479f2a77e973bd9a1a7 316 PRINTS PR00146 Dihydrodipicolinate synthase signature 137 154 4.4E-9 T 13-10-2018 IPR002220 DapA-like GO:0016829 AP3564_08710 172da03c9ffb6479f2a77e973bd9a1a7 316 PRINTS PR00146 Dihydrodipicolinate synthase signature 41 62 4.4E-9 T 13-10-2018 IPR002220 DapA-like GO:0016829 AP3564_08710 172da03c9ffb6479f2a77e973bd9a1a7 316 PRINTS PR00146 Dihydrodipicolinate synthase signature 77 95 4.4E-9 T 13-10-2018 IPR002220 DapA-like GO:0016829 AP3564_08710 172da03c9ffb6479f2a77e973bd9a1a7 316 SUPERFAMILY SSF51569 3 309 5.34E-73 T 13-10-2018 AP3564_08710 172da03c9ffb6479f2a77e973bd9a1a7 316 PIRSF PIRSF001365 2 316 1.3E-66 T 13-10-2018 IPR002220 DapA-like GO:0016829 AP3564_08710 172da03c9ffb6479f2a77e973bd9a1a7 316 SMART SM01130 6 307 1.3E-79 T 13-10-2018 IPR002220 DapA-like GO:0016829 AP3564_08710 172da03c9ffb6479f2a77e973bd9a1a7 316 Gene3D G3DSA:3.20.20.70 1 309 8.3E-79 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_08710 172da03c9ffb6479f2a77e973bd9a1a7 316 Pfam PF00701 Dihydrodipicolinate synthetase family 7 303 1.9E-47 T 13-10-2018 IPR002220 DapA-like GO:0016829 AP3564_15415 9cd0daa87199696cd9a03ffbe2633574 1079 Gene3D G3DSA:3.40.50.10810 243 498 1.3E-25 T 13-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily AP3564_15415 9cd0daa87199696cd9a03ffbe2633574 1079 Pfam PF00271 Helicase conserved C-terminal domain 694 818 6.7E-14 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_15415 9cd0daa87199696cd9a03ffbe2633574 1079 SUPERFAMILY SSF52540 291 840 8.9E-34 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_15415 9cd0daa87199696cd9a03ffbe2633574 1079 Pfam PF04851 Type III restriction enzyme, res subunit 265 400 9.6E-6 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AP3564_15415 9cd0daa87199696cd9a03ffbe2633574 1079 SMART SM00487 241 432 3.2E-8 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AP3564_15415 9cd0daa87199696cd9a03ffbe2633574 1079 SMART SM00490 715 818 5.6E-10 T 13-10-2018 IPR001650 Helicase, C-terminal AP3564_15415 9cd0daa87199696cd9a03ffbe2633574 1079 Gene3D G3DSA:3.40.50.300 645 848 8.2E-32 T 13-10-2018 AP3564_09340 0733b948eb5c7feaa0a19deb9094c0f8 267 ProDom PD119415 TRANSGLUTAMINASE TRANSFERASE ACYLTRANSFERASE GAMMA-GLUTAMYLTRANSFERASE PROTEIN-GLUTAMINE TGASE SPORULATION TGL 23 244 1.0E-67 T 13-10-2018 IPR020916 Protein-glutamine gamma-glutamyltransferase, bacteria GO:0003810 AP3564_09340 0733b948eb5c7feaa0a19deb9094c0f8 267 Hamap MF_00727 Protein-glutamine gamma-glutamyltransferase [tgl]. 1 246 41.378 T 13-10-2018 IPR020916 Protein-glutamine gamma-glutamyltransferase, bacteria GO:0003810 AP3564_15300 0a155a7255f7a9e6f7ec802167cf0dad 278 Gene3D G3DSA:1.10.246.130 1 95 2.6E-33 T 13-10-2018 AP3564_15300 0a155a7255f7a9e6f7ec802167cf0dad 278 SUPERFAMILY SSF56235 2 278 1.93E-90 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AP3564_15300 0a155a7255f7a9e6f7ec802167cf0dad 278 Pfam PF01019 Gamma-glutamyltranspeptidase 2 273 2.5E-79 T 13-10-2018 AP3564_15300 0a155a7255f7a9e6f7ec802167cf0dad 278 Gene3D G3DSA:3.60.20.40 96 278 5.3E-66 T 13-10-2018 AP3564_15300 0a155a7255f7a9e6f7ec802167cf0dad 278 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 96 114 8.3E-21 T 13-10-2018 AP3564_15300 0a155a7255f7a9e6f7ec802167cf0dad 278 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 175 192 8.3E-21 T 13-10-2018 AP3564_15300 0a155a7255f7a9e6f7ec802167cf0dad 278 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 3 22 8.3E-21 T 13-10-2018 AP3564_15300 0a155a7255f7a9e6f7ec802167cf0dad 278 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 120 138 8.3E-21 T 13-10-2018 AP3564_15300 0a155a7255f7a9e6f7ec802167cf0dad 278 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 151 166 8.3E-21 T 13-10-2018 AP3564_17950 d98b8885e003cae535bb98c15922d96e 443 Pfam PF01609 Transposase DDE domain 116 363 1.9E-34 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_17950 d98b8885e003cae535bb98c15922d96e 443 SUPERFAMILY SSF53098 41 402 3.49E-38 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_17950 d98b8885e003cae535bb98c15922d96e 443 Gene3D G3DSA:3.90.350.10 260 345 2.7E-5 T 13-10-2018 IPR014736 Transposase, Tn5-like, core AP3564_15585 e34f2c41f6d41708fc9a19b8dffe1855 233 Gene3D G3DSA:3.40.50.2300 4 140 4.4E-31 T 13-10-2018 AP3564_15585 e34f2c41f6d41708fc9a19b8dffe1855 233 SMART SM00448 6 119 3.6E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_15585 e34f2c41f6d41708fc9a19b8dffe1855 233 Pfam PF00072 Response regulator receiver domain 8 118 2.8E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_15585 e34f2c41f6d41708fc9a19b8dffe1855 233 PIRSF PIRSF006171 4 233 1.1E-78 T 13-10-2018 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0000160|GO:0003700 AP3564_15585 e34f2c41f6d41708fc9a19b8dffe1855 233 SUPERFAMILY SSF52172 6 142 8.25E-36 T 13-10-2018 IPR011006 CheY-like superfamily AP3564_04955 cf99775fee04c2163acb7245c4190bde 195 SUPERFAMILY SSF52317 2 188 2.08E-56 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AP3564_04955 cf99775fee04c2163acb7245c4190bde 195 TIGRFAM TIGR03800 PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 2 184 9.0E-87 T 13-10-2018 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 AP3564_04955 cf99775fee04c2163acb7245c4190bde 195 Pfam PF01174 SNO glutamine amidotransferase family 5 187 5.2E-76 T 13-10-2018 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 AP3564_04955 cf99775fee04c2163acb7245c4190bde 195 Hamap MF_01615 Pyridoxal 5'-phosphate synthase subunit PdxT [pdxT]. 3 185 38.836 T 13-10-2018 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 AP3564_04955 cf99775fee04c2163acb7245c4190bde 195 ProSitePatterns PS01236 PdxT/SNO family family signature. 40 50 - T 13-10-2018 IPR021196 PdxT/SNO family, conserved site KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 AP3564_04955 cf99775fee04c2163acb7245c4190bde 195 PIRSF PIRSF005639 1 190 4.0E-77 T 13-10-2018 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 AP3564_04955 cf99775fee04c2163acb7245c4190bde 195 Gene3D G3DSA:3.40.50.880 1 195 9.1E-76 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AP3564_12090 f674d949d58c02cf7907fd0031740d77 227 Gene3D G3DSA:1.10.4190.10 2 205 6.6E-62 T 13-10-2018 IPR038277 UreF domain superfamily AP3564_12090 f674d949d58c02cf7907fd0031740d77 227 Hamap MF_01385 Urease accessory protein UreF [ureF]. 3 227 26.277 T 13-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 AP3564_12090 f674d949d58c02cf7907fd0031740d77 227 Pfam PF01730 UreF 35 185 2.2E-26 T 13-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 AP3564_12090 f674d949d58c02cf7907fd0031740d77 227 PIRSF PIRSF009467 1 227 2.7E-70 T 13-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 AP3564_10140 459601489c072532a133cfd41efdb4d0 220 Hamap MF_01124 Adapter protein MecA [mecA]. 1 219 27.348 T 13-10-2018 IPR008681 Negative regulator of genetic competence, MecA AP3564_10140 459601489c072532a133cfd41efdb4d0 220 PIRSF PIRSF029008 1 220 6.7E-78 T 13-10-2018 IPR008681 Negative regulator of genetic competence, MecA AP3564_10140 459601489c072532a133cfd41efdb4d0 220 Gene3D G3DSA:3.30.70.1950 124 220 1.4E-33 T 13-10-2018 IPR038471 MecA, C-terminal domain superfamily AP3564_10140 459601489c072532a133cfd41efdb4d0 220 Pfam PF05389 Negative regulator of genetic competence (MecA) 1 215 4.8E-56 T 13-10-2018 IPR008681 Negative regulator of genetic competence, MecA AP3564_17100 0c31b47527033043b30153db772866b2 426 Pfam PF01385 Probable transposase 185 302 1.3E-20 T 13-10-2018 IPR001959 Probable transposase, IS891/IS1136/IS1341 AP3564_17100 0c31b47527033043b30153db772866b2 426 Pfam PF07282 Putative transposase DNA-binding domain 321 396 4.4E-18 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal AP3564_17100 0c31b47527033043b30153db772866b2 426 TIGRFAM TIGR01766 tspaseT_teng_C: transposase, IS605 OrfB family 268 348 1.6E-18 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal AP3564_17785 ddcaf9c6b09ab6c24b9791bd3485a185 330 Pfam PF00676 Dehydrogenase E1 component 21 320 1.1E-102 T 13-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 AP3564_17785 ddcaf9c6b09ab6c24b9791bd3485a185 330 Gene3D G3DSA:3.40.50.970 2 330 1.2E-116 T 13-10-2018 AP3564_17785 ddcaf9c6b09ab6c24b9791bd3485a185 330 SUPERFAMILY SSF52518 9 329 5.7E-100 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold AP3564_01725 0de1a0aac50c7e99ce0e43403b06fac6 130 Pfam PF01609 Transposase DDE domain 19 80 5.5E-9 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_01725 0de1a0aac50c7e99ce0e43403b06fac6 130 SUPERFAMILY SSF53098 23 95 3.41E-11 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_05615 cce913f0284773900e7a3896e2056fa9 486 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 5 485 34.276 T 13-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AP3564_05615 cce913f0284773900e7a3896e2056fa9 486 SUPERFAMILY SSF52374 6 317 2.95E-114 T 13-10-2018 AP3564_05615 cce913f0284773900e7a3896e2056fa9 486 Gene3D G3DSA:3.40.50.620 1 333 8.7E-144 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AP3564_05615 cce913f0284773900e7a3896e2056fa9 486 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 6 324 3.0E-126 T 13-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 AP3564_05615 cce913f0284773900e7a3896e2056fa9 486 PRINTS PR00987 Glutamyl-tRNA synthetase signature 38 51 3.2E-29 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AP3564_05615 cce913f0284773900e7a3896e2056fa9 486 PRINTS PR00987 Glutamyl-tRNA synthetase signature 195 205 3.2E-29 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AP3564_05615 cce913f0284773900e7a3896e2056fa9 486 PRINTS PR00987 Glutamyl-tRNA synthetase signature 23 34 3.2E-29 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AP3564_05615 cce913f0284773900e7a3896e2056fa9 486 PRINTS PR00987 Glutamyl-tRNA synthetase signature 9 21 3.2E-29 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AP3564_05615 cce913f0284773900e7a3896e2056fa9 486 PRINTS PR00987 Glutamyl-tRNA synthetase signature 211 219 3.2E-29 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AP3564_05615 cce913f0284773900e7a3896e2056fa9 486 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 6 483 3.9E-194 T 13-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AP3564_05615 cce913f0284773900e7a3896e2056fa9 486 Gene3D G3DSA:1.10.10.350 391 486 2.1E-32 T 13-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AP3564_05615 cce913f0284773900e7a3896e2056fa9 486 SUPERFAMILY SSF48163 299 485 2.75E-48 T 13-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AP3564_05615 cce913f0284773900e7a3896e2056fa9 486 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 12 23 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AP3564_07135 c1e673bc22e240605126c9165c91ca95 332 SUPERFAMILY SSF55347 127 294 1.54E-35 T 13-10-2018 AP3564_07135 c1e673bc22e240605126c9165c91ca95 332 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 118 7.3E-21 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AP3564_07135 c1e673bc22e240605126c9165c91ca95 332 Gene3D G3DSA:3.40.50.720 1 121 6.2E-34 T 13-10-2018 AP3564_07135 c1e673bc22e240605126c9165c91ca95 332 Gene3D G3DSA:3.30.360.10 122 327 1.2E-43 T 13-10-2018 AP3564_07135 c1e673bc22e240605126c9165c91ca95 332 SUPERFAMILY SSF51735 2 168 7.73E-48 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_17140 64dd39b4644ed8455cffcf4aaf85b7c1 258 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 4 256 7.0E-89 T 13-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AP3564_17140 64dd39b4644ed8455cffcf4aaf85b7c1 258 SUPERFAMILY SSF51366 4 231 3.01E-79 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AP3564_17140 64dd39b4644ed8455cffcf4aaf85b7c1 258 Pfam PF00290 Tryptophan synthase alpha chain 6 251 1.9E-89 T 13-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AP3564_17140 64dd39b4644ed8455cffcf4aaf85b7c1 258 Gene3D G3DSA:3.20.20.70 1 257 6.1E-91 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_17140 64dd39b4644ed8455cffcf4aaf85b7c1 258 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 3 256 33.699 T 13-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AP3564_17140 64dd39b4644ed8455cffcf4aaf85b7c1 258 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 38 51 - T 13-10-2018 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AP3564_09470 ba39ceb24cad3b80fe058b573b418864 478 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 119 470 9.4E-113 T 13-10-2018 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 AP3564_09470 ba39ceb24cad3b80fe058b573b418864 478 SUPERFAMILY SSF56322 46 472 2.35E-102 T 13-10-2018 IPR005801 ADC synthase GO:0009058 AP3564_09470 ba39ceb24cad3b80fe058b573b418864 478 Gene3D G3DSA:3.60.120.10 13 475 9.2E-113 T 13-10-2018 IPR005801 ADC synthase GO:0009058 AP3564_09470 ba39ceb24cad3b80fe058b573b418864 478 Hamap MF_01935 Isochorismate synthase MenF [menF]. 14 473 28.608 T 13-10-2018 IPR034681 Isochorismate synthase MenF GO:0008909|GO:0009234 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 AP3564_09470 ba39ceb24cad3b80fe058b573b418864 478 Pfam PF00425 chorismate binding enzyme 210 463 1.1E-76 T 13-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal AP3564_10935 625f3d6633f217c34bee1b0ee4188d91 423 Pfam PF02754 Cysteine-rich domain 307 391 5.0E-14 T 13-10-2018 IPR004017 Cysteine-rich domain AP3564_10935 625f3d6633f217c34bee1b0ee4188d91 423 Pfam PF02754 Cysteine-rich domain 179 261 9.4E-14 T 13-10-2018 IPR004017 Cysteine-rich domain AP3564_10935 625f3d6633f217c34bee1b0ee4188d91 423 SUPERFAMILY SSF54862 12 106 2.55E-18 T 13-10-2018 AP3564_10935 625f3d6633f217c34bee1b0ee4188d91 423 Pfam PF13183 4Fe-4S dicluster domain 12 77 3.7E-12 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AP3564_10935 625f3d6633f217c34bee1b0ee4188d91 423 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 63 74 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AP3564_10935 625f3d6633f217c34bee1b0ee4188d91 423 Gene3D G3DSA:1.10.1060.10 2 91 7.7E-9 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AP3564_10935 625f3d6633f217c34bee1b0ee4188d91 423 PIRSF PIRSF000139 1 422 7.2E-125 T 13-10-2018 AP3564_09670 a2d8b3aebc41fc653e8dfb4988ff4985 73 Pfam PF08220 DeoR-like helix-turn-helix domain 11 54 1.8E-9 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AP3564_09670 a2d8b3aebc41fc653e8dfb4988ff4985 73 SMART SM00420 11 60 0.0017 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AP3564_09670 a2d8b3aebc41fc653e8dfb4988ff4985 73 Gene3D G3DSA:1.10.10.10 10 72 6.0E-7 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_09670 a2d8b3aebc41fc653e8dfb4988ff4985 73 SUPERFAMILY SSF46785 8 62 2.14E-8 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_06850 04b5875f9f9693c45033e0f3ae3c854b 199 SMART SM00332 6 196 0.0085 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AP3564_06850 04b5875f9f9693c45033e0f3ae3c854b 199 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 35 165 1.4E-9 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AP3564_06850 04b5875f9f9693c45033e0f3ae3c854b 199 SUPERFAMILY SSF81606 14 161 1.15E-13 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AP3564_06850 04b5875f9f9693c45033e0f3ae3c854b 199 SMART SM00331 9 198 1.6E-23 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AP3564_06850 04b5875f9f9693c45033e0f3ae3c854b 199 Gene3D G3DSA:3.60.40.10 1 198 7.9E-38 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AP3564_10865 651812c372ac16ab14730033cb50d175 525 Pfam PF13817 IS66 C-terminal element 469 509 3.3E-14 T 13-10-2018 IPR039552 Transposase IS66, C-terminal AP3564_10865 651812c372ac16ab14730033cb50d175 525 Pfam PF13005 zinc-finger binding domain of transposase IS66 112 156 8.8E-14 T 13-10-2018 IPR024474 Zinc-finger binding domain of transposase IS66 AP3564_10865 651812c372ac16ab14730033cb50d175 525 Pfam PF03050 Transposase IS66 family 176 462 2.9E-104 T 13-10-2018 IPR004291 Transposase, IS66 AP3564_10865 651812c372ac16ab14730033cb50d175 525 Pfam PF13007 Transposase C of IS166 homeodomain 33 104 8.5E-11 T 13-10-2018 IPR024463 Transposase TnpC, homeodomain AP3564_15265 f7ac5caf74720cc768921f033ebe256e 120 SUPERFAMILY SSF47413 4 73 5.0E-7 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AP3564_15265 f7ac5caf74720cc768921f033ebe256e 120 Gene3D G3DSA:1.10.260.40 4 74 2.6E-7 T 13-10-2018 AP3564_09600 b6126329511435b08ae320c862a3ea0d 195 SUPERFAMILY SSF53335 13 163 2.59E-28 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_09600 b6126329511435b08ae320c862a3ea0d 195 Gene3D G3DSA:3.40.50.150 1 192 3.9E-72 T 13-10-2018 AP3564_09600 b6126329511435b08ae320c862a3ea0d 195 Pfam PF06962 Putative rRNA methylase 48 188 5.0E-50 T 13-10-2018 IPR010719 Putative rRNA methylase AP3564_05045 f6c1df462c3ac355399d7690c15df539 479 SUPERFAMILY SSF55904 336 467 5.23E-23 T 13-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 AP3564_05045 f6c1df462c3ac355399d7690c15df539 479 Gene3D G3DSA:3.90.1150.150 282 368 2.0E-108 T 13-10-2018 AP3564_05045 f6c1df462c3ac355399d7690c15df539 479 SUPERFAMILY SSF53383 6 361 2.06E-80 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_05045 f6c1df462c3ac355399d7690c15df539 479 Gene3D G3DSA:3.40.640.10 48 279 2.0E-108 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_05045 f6c1df462c3ac355399d7690c15df539 479 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 403 464 1.1E-10 T 13-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 AP3564_05045 f6c1df462c3ac355399d7690c15df539 479 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 6 300 5.7E-76 T 13-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 AP3564_05045 f6c1df462c3ac355399d7690c15df539 479 Gene3D G3DSA:3.90.105.10 413 468 5.3E-20 T 13-10-2018 AP3564_13690 f2b0370adc0e0b888715a79af7123d22 146 SMART SM00116 79 126 1.8E-12 T 13-10-2018 IPR000644 CBS domain AP3564_13690 f2b0370adc0e0b888715a79af7123d22 146 SMART SM00116 14 61 4.9E-15 T 13-10-2018 IPR000644 CBS domain AP3564_13690 f2b0370adc0e0b888715a79af7123d22 146 SUPERFAMILY SSF54631 6 122 9.35E-38 T 13-10-2018 AP3564_13690 f2b0370adc0e0b888715a79af7123d22 146 Gene3D G3DSA:3.10.580.10 2 143 1.2E-44 T 13-10-2018 AP3564_13690 f2b0370adc0e0b888715a79af7123d22 146 Pfam PF00571 CBS domain 7 56 1.2E-16 T 13-10-2018 IPR000644 CBS domain AP3564_13690 f2b0370adc0e0b888715a79af7123d22 146 Pfam PF00571 CBS domain 72 122 1.5E-10 T 13-10-2018 IPR000644 CBS domain AP3564_08350 ac3504fd67a7994826c81f28e4aa3d2a 114 Gene3D G3DSA:3.30.160.170 11 110 1.7E-29 T 13-10-2018 IPR035924 FlaG-like superfamily AP3564_08350 ac3504fd67a7994826c81f28e4aa3d2a 114 Pfam PF03646 FlaG protein 22 111 3.6E-25 T 13-10-2018 IPR005186 FlaG protein AP3564_08350 ac3504fd67a7994826c81f28e4aa3d2a 114 SUPERFAMILY SSF160214 34 113 2.22E-25 T 13-10-2018 IPR035924 FlaG-like superfamily AP3564_00340 365467646ae30f0191e8ac7744108174 460 PIRSF PIRSF006060 1 458 2.0E-83 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 AP3564_00340 365467646ae30f0191e8ac7744108174 460 Gene3D G3DSA:1.20.1740.10 4 459 4.8E-73 T 13-10-2018 AP3564_00340 365467646ae30f0191e8ac7744108174 460 Pfam PF13520 Amino acid permease 13 419 5.7E-47 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 AP3564_12495 8da38e7b5e23f52d79440f43e4f7ca84 284 Pfam PF14257 Domain of unknown function (DUF4349) 14 273 4.2E-65 T 13-10-2018 IPR025645 Domain of unknown function DUF4349 AP3564_10020 38bc3468aab534a58ef2cb21ed339e69 249 Gene3D G3DSA:3.40.50.1820 1 249 2.3E-54 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold AP3564_10020 38bc3468aab534a58ef2cb21ed339e69 249 Pfam PF00326 Prolyl oligopeptidase family 40 248 1.1E-15 T 13-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 AP3564_10020 38bc3468aab534a58ef2cb21ed339e69 249 SUPERFAMILY SSF53474 18 248 7.77E-35 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold AP3564_02775 5e756b1a3fe9f1ca12ed68faeb652045 157 PIRSF PIRSF029256 2 157 1.5E-68 T 13-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 AP3564_02775 5e756b1a3fe9f1ca12ed68faeb652045 157 Gene3D G3DSA:3.40.1280.10 1 157 2.1E-67 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AP3564_02775 5e756b1a3fe9f1ca12ed68faeb652045 157 Pfam PF00588 SpoU rRNA Methylase family 3 145 3.5E-34 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AP3564_02775 5e756b1a3fe9f1ca12ed68faeb652045 157 SUPERFAMILY SSF75217 3 155 2.75E-44 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases AP3564_02775 5e756b1a3fe9f1ca12ed68faeb652045 157 TIGRFAM TIGR00185 tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltransferase 2 156 4.0E-65 T 13-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 AP3564_02775 5e756b1a3fe9f1ca12ed68faeb652045 157 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 3 154 34.754 T 13-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 AP3564_02145 93e49919d062bcf106537bcf4d47295c 571 Gene3D G3DSA:3.30.2010.10 322 411 2.7E-11 T 13-10-2018 AP3564_02145 93e49919d062bcf106537bcf4d47295c 571 Pfam PF01435 Peptidase family M48 331 540 7.4E-16 T 13-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AP3564_05565 ff97b070113098b24537b136609e22e7 226 PRINTS PR01837 MgtC/SapB protein signature 71 93 6.9E-42 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AP3564_05565 ff97b070113098b24537b136609e22e7 226 PRINTS PR01837 MgtC/SapB protein signature 36 54 6.9E-42 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AP3564_05565 ff97b070113098b24537b136609e22e7 226 PRINTS PR01837 MgtC/SapB protein signature 98 122 6.9E-42 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AP3564_05565 ff97b070113098b24537b136609e22e7 226 PRINTS PR01837 MgtC/SapB protein signature 17 36 6.9E-42 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AP3564_05565 ff97b070113098b24537b136609e22e7 226 Pfam PF02308 MgtC family 14 144 7.5E-40 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AP3564_08960 6c1194ef4140d466b645c595292d4f37 436 TIGRFAM TIGR01981 sufD: FeS assembly protein SufD 152 427 1.7E-77 T 13-10-2018 IPR011542 SUF system FeS cluster assembly, SufD GO:0016226 AP3564_08960 6c1194ef4140d466b645c595292d4f37 436 Pfam PF01458 Uncharacterized protein family (UPF0051) 186 410 1.1E-64 T 13-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 AP3564_08960 6c1194ef4140d466b645c595292d4f37 436 SUPERFAMILY SSF101960 13 435 9.02E-122 T 13-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily AP3564_03725 80cd182859ec6ea70d79d38fb454d183 622 Gene3D G3DSA:2.70.98.70 393 621 1.9E-33 T 13-10-2018 AP3564_03725 80cd182859ec6ea70d79d38fb454d183 622 SUPERFAMILY SSF48230 76 343 6.59E-45 T 13-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 AP3564_03725 80cd182859ec6ea70d79d38fb454d183 622 Pfam PF07940 Heparinase II/III-like protein 394 612 1.0E-33 T 13-10-2018 IPR012480 Heparinase II/III-like GO:0016829 AP3564_03725 80cd182859ec6ea70d79d38fb454d183 622 Gene3D G3DSA:1.50.10.100 17 356 1.8E-93 T 13-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 AP3564_03725 80cd182859ec6ea70d79d38fb454d183 622 Pfam PF16889 Heparinase II/III N-terminus 90 345 3.8E-39 T 13-10-2018 IPR031680 Heparin-sulfate lyase, N-terminal MetaCyc: PWY-7651 AP3564_18120 edc7f3635fedb218da9ea17ff7d6b6f7 636 SUPERFAMILY SSF53649 242 618 9.81E-74 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 AP3564_18120 edc7f3635fedb218da9ea17ff7d6b6f7 636 Pfam PF00884 Sulfatase 244 536 1.8E-37 T 13-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 AP3564_18120 edc7f3635fedb218da9ea17ff7d6b6f7 636 PIRSF PIRSF005091 1 620 3.1E-199 T 13-10-2018 IPR012160 Lipoteichoic acid synthase-like AP3564_18120 edc7f3635fedb218da9ea17ff7d6b6f7 636 Gene3D G3DSA:3.40.720.10 237 546 2.9E-78 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 AP3564_08395 7fd3216f0ffe342d06e2c457b67a473a 296 Gene3D G3DSA:3.30.70.3040 49 156 6.1E-8 T 13-10-2018 AP3564_08395 7fd3216f0ffe342d06e2c457b67a473a 296 Pfam PF02687 FtsX-like permease family 199 289 2.8E-7 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 AP3564_08395 7fd3216f0ffe342d06e2c457b67a473a 296 PIRSF PIRSF003097 1 296 3.2E-92 T 13-10-2018 IPR004513 Cell division protein FtsX GO:0016021 AP3564_17405 eb0caa7bef4540dbf29479e3060ad14c 543 Pfam PF05140 ResB-like family 67 431 1.5E-73 T 13-10-2018 IPR007816 ResB-like domain AP3564_17405 eb0caa7bef4540dbf29479e3060ad14c 543 Pfam PF05140 ResB-like family 443 523 4.6E-19 T 13-10-2018 IPR007816 ResB-like domain AP3564_04535 b6696ab2a926b06d41bcde60f5744808 349 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 307 1.9E-28 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AP3564_04535 b6696ab2a926b06d41bcde60f5744808 349 Hamap MF_01685 Ferredoxin--NADP reductase. 6 333 37.82 T 13-10-2018 IPR022890 Ferredoxin--NADP reductase, type 2 GO:0004324|GO:0055114 KEGG: 00195+1.18.1.2|MetaCyc: PWY-101 AP3564_04535 b6696ab2a926b06d41bcde60f5744808 349 Gene3D G3DSA:3.50.50.60 7 309 3.3E-87 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_04535 b6696ab2a926b06d41bcde60f5744808 349 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 280 298 5.0E-24 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_04535 b6696ab2a926b06d41bcde60f5744808 349 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 112 120 5.0E-24 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_04535 b6696ab2a926b06d41bcde60f5744808 349 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 5.0E-24 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_04535 b6696ab2a926b06d41bcde60f5744808 349 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 64 74 5.0E-24 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_04535 b6696ab2a926b06d41bcde60f5744808 349 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 151 175 5.0E-24 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_04535 b6696ab2a926b06d41bcde60f5744808 349 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 111 129 3.5E-19 T 13-10-2018 AP3564_04535 b6696ab2a926b06d41bcde60f5744808 349 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 155 173 3.5E-19 T 13-10-2018 AP3564_04535 b6696ab2a926b06d41bcde60f5744808 349 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 270 292 3.5E-19 T 13-10-2018 AP3564_04535 b6696ab2a926b06d41bcde60f5744808 349 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 3.5E-19 T 13-10-2018 AP3564_04535 b6696ab2a926b06d41bcde60f5744808 349 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 241 257 3.5E-19 T 13-10-2018 AP3564_04535 b6696ab2a926b06d41bcde60f5744808 349 Gene3D G3DSA:3.50.50.60 127 248 3.3E-87 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_04535 b6696ab2a926b06d41bcde60f5744808 349 SUPERFAMILY SSF51905 1 319 3.37E-38 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_08275 a369d0d207b5fd4ecf2d29b93f0fb3bf 259 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 100 120 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 AP3564_08275 a369d0d207b5fd4ecf2d29b93f0fb3bf 259 Gene3D G3DSA:3.90.226.10 1 200 1.7E-72 T 13-10-2018 AP3564_08275 a369d0d207b5fd4ecf2d29b93f0fb3bf 259 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 257 2.9E-73 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AP3564_08275 a369d0d207b5fd4ecf2d29b93f0fb3bf 259 SUPERFAMILY SSF52096 1 258 1.7E-89 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AP3564_08275 a369d0d207b5fd4ecf2d29b93f0fb3bf 259 Gene3D G3DSA:1.10.12.10 201 259 3.1E-23 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal AP3564_18580 60d38a58fc89cdc6fe32f47bd09fabf5 46 SUPERFAMILY SSF100985 1 44 2.22E-15 T 13-10-2018 IPR036916 Sporulation inhibitor A superfamily AP3564_18580 60d38a58fc89cdc6fe32f47bd09fabf5 46 Pfam PF08970 Sporulation inhibitor A 1 43 7.3E-21 T 13-10-2018 IPR015064 Sporulation inhibitor A AP3564_18580 60d38a58fc89cdc6fe32f47bd09fabf5 46 Gene3D G3DSA:1.10.287.1100 4 37 2.3E-17 T 13-10-2018 IPR036916 Sporulation inhibitor A superfamily AP3564_08625 a9af8f40b8f1fc64e14dcafc78da5829 175 Gene3D G3DSA:2.60.40.1240 51 173 3.2E-26 T 13-10-2018 IPR029050 Immunoprotective extracellular, immunoglobulin-like domain superfamily AP3564_08625 a9af8f40b8f1fc64e14dcafc78da5829 175 SUPERFAMILY SSF81982 123 159 6.67E-5 T 13-10-2018 AP3564_08625 a9af8f40b8f1fc64e14dcafc78da5829 175 Pfam PF11611 Domain of unknown function (DUF4352) 52 168 3.0E-20 T 13-10-2018 IPR029051 Domain of unknown function DUF4352 AP3564_04635 ef2cd61888b5a9c6b27e679ed843c07d 151 Gene3D G3DSA:3.30.530.20 1 150 1.2E-28 T 13-10-2018 IPR023393 START-like domain superfamily AP3564_04635 ef2cd61888b5a9c6b27e679ed843c07d 151 SUPERFAMILY SSF55961 1 145 2.46E-27 T 13-10-2018 AP3564_04635 ef2cd61888b5a9c6b27e679ed843c07d 151 Pfam PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) 9 143 5.5E-21 T 13-10-2018 IPR010419 Carbon monoxide dehydrogenase subunit G AP3564_01755 41240941c97df26ddb98811b24c5ca7e 92 TIGRFAM TIGR01167 LPXTG_anchor: LPXTG cell wall anchor domain 58 84 1.0E-4 T 13-10-2018 AP3564_11290 e2754e8b2fb900dd57803115647872ba 527 Gene3D G3DSA:3.40.50.12780 1 419 5.4E-128 T 13-10-2018 AP3564_11290 e2754e8b2fb900dd57803115647872ba 527 ProSitePatterns PS00455 Putative AMP-binding domain signature. 176 187 - T 13-10-2018 IPR020845 AMP-binding, conserved site AP3564_11290 e2754e8b2fb900dd57803115647872ba 527 SUPERFAMILY SSF56801 10 520 8.37E-161 T 13-10-2018 AP3564_11290 e2754e8b2fb900dd57803115647872ba 527 Pfam PF13193 AMP-binding enzyme C-terminal domain 433 508 2.7E-20 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AP3564_11290 e2754e8b2fb900dd57803115647872ba 527 Gene3D G3DSA:3.30.300.310 420 524 3.5E-32 T 13-10-2018 AP3564_11290 e2754e8b2fb900dd57803115647872ba 527 Pfam PF00501 AMP-binding enzyme 16 424 3.6E-113 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AP3564_16330 789006753a6c4d1ac094be9320c1ffbd 90 TIGRFAM TIGR00002 S16: ribosomal protein bS16 3 80 3.9E-36 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_16330 789006753a6c4d1ac094be9320c1ffbd 90 Gene3D G3DSA:3.30.1320.10 1 90 8.5E-38 T 13-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_16330 789006753a6c4d1ac094be9320c1ffbd 90 Pfam PF00886 Ribosomal protein S16 9 67 3.4E-26 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_16330 789006753a6c4d1ac094be9320c1ffbd 90 ProSitePatterns PS00732 Ribosomal protein S16 signature. 3 12 - T 13-10-2018 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_16330 789006753a6c4d1ac094be9320c1ffbd 90 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 2 77 25.152 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_16330 789006753a6c4d1ac094be9320c1ffbd 90 SUPERFAMILY SSF54565 2 88 2.22E-35 T 13-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_00850 dc8ca269e5d8beafb021731b8f5eb0b7 485 Gene3D G3DSA:3.90.1300.10 2 485 2.8E-204 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AP3564_00850 dc8ca269e5d8beafb021731b8f5eb0b7 485 Pfam PF01425 Amidase 24 465 7.9E-164 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AP3564_00850 dc8ca269e5d8beafb021731b8f5eb0b7 485 ProSitePatterns PS00571 Amidases signature. 152 183 - T 13-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 AP3564_00850 dc8ca269e5d8beafb021731b8f5eb0b7 485 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 11 477 2.3E-207 T 13-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AP3564_00850 dc8ca269e5d8beafb021731b8f5eb0b7 485 SUPERFAMILY SSF75304 1 483 5.89E-170 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AP3564_00850 dc8ca269e5d8beafb021731b8f5eb0b7 485 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 11 477 97.224 T 13-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AP3564_00800 d5a77c4e2097293a1b2a9926d76459f8 345 Pfam PF17479 Protein of unknown function (DUF3048) C-terminal domain 229 327 4.2E-19 T 13-10-2018 IPR035328 Protein of unknown function DUF3048, C-terminal domain AP3564_00800 d5a77c4e2097293a1b2a9926d76459f8 345 Pfam PF11258 Protein of unknown function (DUF3048) N-terminal domain 49 190 1.3E-50 T 13-10-2018 IPR021416 Protein of unknown function DUF3048, N-terminal AP3564_00800 d5a77c4e2097293a1b2a9926d76459f8 345 SUPERFAMILY SSF159774 46 334 2.62E-93 T 13-10-2018 IPR023158 YerB-like superfamily AP3564_00800 d5a77c4e2097293a1b2a9926d76459f8 345 Gene3D G3DSA:3.50.90.10 33 344 4.1E-102 T 13-10-2018 IPR023158 YerB-like superfamily AP3564_01535 01f46d74f257eb2f215eddd03f64924a 275 PIRSF PIRSF035875 4 275 4.1E-81 T 13-10-2018 IPR017039 Virulence factor BrkB AP3564_01535 01f46d74f257eb2f215eddd03f64924a 275 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 11 271 1.0E-66 T 13-10-2018 IPR017039 Virulence factor BrkB AP3564_01535 01f46d74f257eb2f215eddd03f64924a 275 Pfam PF03631 Virulence factor BrkB 20 271 2.4E-73 T 13-10-2018 IPR017039 Virulence factor BrkB AP3564_17900 5d6a977e09d141f824272898d81ef9ef 68 TIGRFAM TIGR02848 spore_III_AC: stage III sporulation protein AC 3 66 5.3E-32 T 13-10-2018 IPR009570 Stage III sporulation protein AC AP3564_17900 5d6a977e09d141f824272898d81ef9ef 68 Pfam PF06686 Stage III sporulation protein AC/AD protein family 8 61 7.2E-17 T 13-10-2018 IPR025664 Stage III sporulation protein AC/AD family AP3564_07765 0df5caef663721e2c8b14c253cc43afb 230 SUPERFAMILY SSF53448 5 228 1.15E-57 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AP3564_07765 0df5caef663721e2c8b14c253cc43afb 230 Pfam PF02348 Cytidylyltransferase 9 130 1.9E-25 T 13-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 AP3564_07765 0df5caef663721e2c8b14c253cc43afb 230 Gene3D G3DSA:3.90.550.10 4 229 1.6E-71 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AP3564_10315 fc3bafa3da68b8386765d6555591f604 243 Pfam PF00756 Putative esterase 15 238 7.8E-46 T 13-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 AP3564_10315 fc3bafa3da68b8386765d6555591f604 243 SUPERFAMILY SSF53474 7 240 6.82E-33 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold AP3564_10315 fc3bafa3da68b8386765d6555591f604 243 Gene3D G3DSA:3.40.50.1820 2 242 3.3E-44 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold AP3564_07905 19ea90261111ee75f9042216e5022ac9 237 TIGRFAM TIGR03425 urea_degr_2: urea carboxylase-associated protein 2 4 234 1.5E-86 T 13-10-2018 IPR017792 Urea carboxylase-associated protein 2 AP3564_07905 19ea90261111ee75f9042216e5022ac9 237 Pfam PF09347 Domain of unknown function (DUF1989) 8 179 4.6E-47 T 13-10-2018 IPR018959 Protein of unknown function DUF1989 AP3564_09845 23459354038a7585583155283f69f8b2 132 ProDom PD031981 GERMINATION SPORE GERPE PE PROBABLE SPORULATION 8 120 3.0E-18 T 13-10-2018 IPR024496 Spore germination protein GerPE AP3564_09845 23459354038a7585583155283f69f8b2 132 Pfam PF10970 Spore germination protein GerPE 8 123 9.0E-36 T 13-10-2018 IPR024496 Spore germination protein GerPE AP3564_02385 a0c02de37eeef74efa1bea7d9bd4c7cd 433 SUPERFAMILY SSF53383 1 428 5.61E-127 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_02385 a0c02de37eeef74efa1bea7d9bd4c7cd 433 Gene3D G3DSA:3.90.1150.10 9 423 9.7E-172 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_02385 a0c02de37eeef74efa1bea7d9bd4c7cd 433 Gene3D G3DSA:3.40.640.10 72 320 9.7E-172 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_02385 a0c02de37eeef74efa1bea7d9bd4c7cd 433 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 5 428 95.211 T 13-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 AP3564_02385 a0c02de37eeef74efa1bea7d9bd4c7cd 433 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 237 273 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AP3564_02385 a0c02de37eeef74efa1bea7d9bd4c7cd 433 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 5 427 4.9E-175 T 13-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 AP3564_02385 a0c02de37eeef74efa1bea7d9bd4c7cd 433 Pfam PF00202 Aminotransferase class-III 35 399 3.2E-72 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AP3564_01425 f39c01a0ec2133d34605bef8d1b37825 182 Gene3D G3DSA:3.20.20.400 1 181 1.3E-51 T 13-10-2018 IPR035928 GlpP-like superfamily AP3564_01425 f39c01a0ec2133d34605bef8d1b37825 182 PIRSF PIRSF016897 1 181 2.3E-49 T 13-10-2018 IPR006699 Glycerol uptake operon antiterminator GO:0006071|GO:0006355 AP3564_01425 f39c01a0ec2133d34605bef8d1b37825 182 SUPERFAMILY SSF110391 2 177 4.45E-44 T 13-10-2018 IPR035928 GlpP-like superfamily AP3564_01425 f39c01a0ec2133d34605bef8d1b37825 182 Pfam PF04309 Glycerol-3-phosphate responsive antiterminator 1 175 1.9E-50 T 13-10-2018 IPR006699 Glycerol uptake operon antiterminator GO:0006071|GO:0006355 AP3564_02305 1cf4488c196ec7b333a583ff36a644c2 183 Gene3D G3DSA:3.40.630.30 1 174 1.4E-22 T 13-10-2018 AP3564_02305 1cf4488c196ec7b333a583ff36a644c2 183 Pfam PF13302 Acetyltransferase (GNAT) domain 7 132 6.2E-16 T 13-10-2018 IPR000182 GNAT domain AP3564_02305 1cf4488c196ec7b333a583ff36a644c2 183 SUPERFAMILY SSF55729 2 132 6.48E-22 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase AP3564_01125 ae439fd8a6af96a7c2727b21684afd52 331 SUPERFAMILY SSF81345 3 323 9.02E-85 T 13-10-2018 IPR037294 ABC transporter, BtuC-like AP3564_01125 ae439fd8a6af96a7c2727b21684afd52 331 Gene3D G3DSA:1.10.3470.10 3 327 6.0E-99 T 13-10-2018 IPR037294 ABC transporter, BtuC-like AP3564_01125 ae439fd8a6af96a7c2727b21684afd52 331 Pfam PF01032 FecCD transport family 17 323 5.0E-95 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 AP3564_04620 b1ef57e0722e7d3523ee2119757b68c6 197 SUPERFAMILY SSF47413 4 61 1.26E-8 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AP3564_04620 b1ef57e0722e7d3523ee2119757b68c6 197 Gene3D G3DSA:1.10.260.40 3 91 7.0E-10 T 13-10-2018 AP3564_04620 b1ef57e0722e7d3523ee2119757b68c6 197 Pfam PF01381 Helix-turn-helix 4 58 2.7E-7 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AP3564_04620 b1ef57e0722e7d3523ee2119757b68c6 197 SMART SM00530 3 58 1.4E-4 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AP3564_04400 7f5b7ca839f0f0ee0771031e13a7c4a9 113 Pfam PF08858 IDEAL domain 74 100 7.6E-8 T 13-10-2018 IPR014957 IDEAL domain AP3564_04400 7f5b7ca839f0f0ee0771031e13a7c4a9 113 SMART SM00914 65 100 1.8E-4 T 13-10-2018 IPR014957 IDEAL domain AP3564_04400 7f5b7ca839f0f0ee0771031e13a7c4a9 113 Gene3D G3DSA:4.10.810.10 72 110 3.2E-5 T 13-10-2018 IPR027393 Virus scaffolding protein, C-terminal GO:0005515 AP3564_07535 1ebd7fbea856547ebe6e3375b8ec6aa2 223 SUPERFAMILY SSF53474 48 210 1.17E-13 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold AP3564_07535 1ebd7fbea856547ebe6e3375b8ec6aa2 223 Gene3D G3DSA:3.40.50.1820 1 223 6.2E-63 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold AP3564_07535 1ebd7fbea856547ebe6e3375b8ec6aa2 223 Pfam PF06028 Alpha/beta hydrolase of unknown function (DUF915) 1 221 3.1E-53 T 13-10-2018 IPR010315 Protein of unknown function DUF915, hydrolase-like AP3564_18635 0b400749efc4ea2561ad0f7ce63bd6ba 92 Pfam PF06949 Protein of unknown function (DUF1292) 12 90 1.3E-16 T 13-10-2018 IPR009711 Uncharacterised protein family UPF0473 AP3564_18635 0b400749efc4ea2561ad0f7ce63bd6ba 92 Hamap MF_01448 UPF0473 protein . 3 91 21.631 T 13-10-2018 IPR009711 Uncharacterised protein family UPF0473 AP3564_16485 6cafec0d898f612ee2de060cf63dc38c 257 Pfam PF01903 CbiX 10 114 1.7E-26 T 13-10-2018 IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX GO:0009236|GO:0016852 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377 AP3564_16485 6cafec0d898f612ee2de060cf63dc38c 257 Pfam PF01903 CbiX 134 235 1.8E-17 T 13-10-2018 IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX GO:0009236|GO:0016852 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377 AP3564_16485 6cafec0d898f612ee2de060cf63dc38c 257 SUPERFAMILY SSF53800 2 241 5.12E-44 T 13-10-2018 AP3564_16485 6cafec0d898f612ee2de060cf63dc38c 257 Gene3D G3DSA:3.40.50.1400 1 124 7.5E-24 T 13-10-2018 AP3564_16485 6cafec0d898f612ee2de060cf63dc38c 257 Gene3D G3DSA:3.40.50.1400 125 245 1.8E-17 T 13-10-2018 AP3564_18875 f668bade7402c82184f6a1bef08a62e2 112 Gene3D G3DSA:3.30.70.1490 1 112 9.0E-36 T 13-10-2018 IPR036764 Cysteine protease Prp superfamily AP3564_18875 f668bade7402c82184f6a1bef08a62e2 112 SUPERFAMILY SSF118010 1 110 1.23E-33 T 13-10-2018 IPR036764 Cysteine protease Prp superfamily AP3564_18875 f668bade7402c82184f6a1bef08a62e2 112 Pfam PF04327 Cysteine protease Prp 1 105 1.2E-26 T 13-10-2018 IPR007422 Cysteine protease Prp AP3564_11860 2293a79ac834ba080af668fe90e5141b 261 Pfam PF00188 Cysteine-rich secretory protein family 146 257 1.5E-23 T 13-10-2018 IPR014044 CAP domain AP3564_11860 2293a79ac834ba080af668fe90e5141b 261 SUPERFAMILY SSF55797 138 258 1.14E-27 T 13-10-2018 IPR035940 CAP superfamily AP3564_11860 2293a79ac834ba080af668fe90e5141b 261 Gene3D G3DSA:3.40.33.10 6 259 2.8E-68 T 13-10-2018 IPR035940 CAP superfamily AP3564_11860 2293a79ac834ba080af668fe90e5141b 261 TIGRFAM TIGR02909 spore_YkwD: uncharacterized protein, YkwD family 138 260 7.6E-61 T 13-10-2018 IPR014258 CAP domain, YkwD-like AP3564_06975 d5114f521200644d03eccab2aad2bdf4 57 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 4 48 1.1E-17 T 13-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 AP3564_06975 d5114f521200644d03eccab2aad2bdf4 57 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 56 17.598 T 13-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 AP3564_06975 d5114f521200644d03eccab2aad2bdf4 57 Pfam PF02416 mttA/Hcf106 family 4 55 3.2E-21 T 13-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 AP3564_06975 d5114f521200644d03eccab2aad2bdf4 57 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 5.5E-5 T 13-10-2018 AP3564_06975 d5114f521200644d03eccab2aad2bdf4 57 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 5.5E-5 T 13-10-2018 AP3564_10810 6bd81d8d02e9d4e6d4dd1182d3070b93 112 Pfam PF00085 Thioredoxin 15 89 3.0E-7 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 AP3564_10810 6bd81d8d02e9d4e6d4dd1182d3070b93 112 SUPERFAMILY SSF52833 6 105 5.0E-20 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AP3564_10810 6bd81d8d02e9d4e6d4dd1182d3070b93 112 Gene3D G3DSA:3.40.30.10 4 106 2.5E-22 T 13-10-2018 AP3564_18140 f446a6a4cd3a592b33c51bc1d4187096 263 Pfam PF01940 Integral membrane protein DUF92 10 251 5.1E-60 T 13-10-2018 IPR002794 Protein of unknown function DUF92, TMEM19 GO:0016021 AP3564_16635 da8e2508450f5a0716607acf70c1e110 308 PIRSF PIRSF018571 1 301 6.8E-91 T 13-10-2018 IPR005081 Sigma-E processing peptidase SpoIIGA GO:0004190|GO:0006508|GO:0030436 AP3564_16635 da8e2508450f5a0716607acf70c1e110 308 TIGRFAM TIGR02854 spore_II_GA: sigma-E processing peptidase SpoIIGA 2 299 1.0E-89 T 13-10-2018 IPR005081 Sigma-E processing peptidase SpoIIGA GO:0004190|GO:0006508|GO:0030436 AP3564_16635 da8e2508450f5a0716607acf70c1e110 308 Pfam PF03419 Sporulation factor SpoIIGA 2 298 1.2E-84 T 13-10-2018 IPR005081 Sigma-E processing peptidase SpoIIGA GO:0004190|GO:0006508|GO:0030436 AP3564_02315 1fd7ba858593cbe32ac3a8048bfdd7d6 271 Pfam PF02631 RecX family 224 264 1.2E-5 T 13-10-2018 IPR003783 Regulatory protein RecX GO:0006282 AP3564_02315 1fd7ba858593cbe32ac3a8048bfdd7d6 271 Pfam PF02631 RecX family 89 207 2.0E-29 T 13-10-2018 IPR003783 Regulatory protein RecX GO:0006282 AP3564_02315 1fd7ba858593cbe32ac3a8048bfdd7d6 271 Gene3D G3DSA:1.10.10.2800 1 110 9.9E-35 T 13-10-2018 AP3564_02315 1fd7ba858593cbe32ac3a8048bfdd7d6 271 Gene3D G3DSA:1.10.10.10 156 217 2.0E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_02315 1fd7ba858593cbe32ac3a8048bfdd7d6 271 Gene3D G3DSA:1.10.10.10 218 271 5.6E-11 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_02315 1fd7ba858593cbe32ac3a8048bfdd7d6 271 Hamap MF_01114 Regulatory protein RecX [recX]. 45 212 17.698 T 13-10-2018 IPR003783 Regulatory protein RecX GO:0006282 AP3564_02315 1fd7ba858593cbe32ac3a8048bfdd7d6 271 Gene3D G3DSA:1.10.10.10 111 155 4.1E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_15045 c6f1e8feef5912c50603f92ac57eb9db 371 Pfam PF14294 Domain of unknown function (DUF4372) 8 76 2.1E-7 T 13-10-2018 IPR025399 Domain of unknown function DUF4372 AP3564_15045 c6f1e8feef5912c50603f92ac57eb9db 371 Pfam PF01609 Transposase DDE domain 121 329 2.3E-29 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_15045 c6f1e8feef5912c50603f92ac57eb9db 371 SUPERFAMILY SSF53098 88 359 1.06E-34 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_08540 04e1c8df347e48f2ee711e9d263df657 388 SUPERFAMILY SSF55681 4 321 1.49E-64 T 13-10-2018 AP3564_08540 04e1c8df347e48f2ee711e9d263df657 388 PIRSF PIRSF001549 1 373 9.4E-85 T 13-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 AP3564_08540 04e1c8df347e48f2ee711e9d263df657 388 Hamap MF_00125 ATP phosphoribosyltransferase regulatory subunit [hisZ]. 14 369 32.664 T 13-10-2018 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 AP3564_08540 04e1c8df347e48f2ee711e9d263df657 388 TIGRFAM TIGR00443 hisZ_biosyn_reg: ATP phosphoribosyltransferase, regulatory subunit 9 319 2.6E-97 T 13-10-2018 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 AP3564_08540 04e1c8df347e48f2ee711e9d263df657 388 Gene3D G3DSA:3.30.930.10 1 320 1.5E-104 T 13-10-2018 AP3564_08540 04e1c8df347e48f2ee711e9d263df657 388 Gene3D G3DSA:3.40.50.12590 321 388 1.6E-17 T 13-10-2018 AP3564_08540 04e1c8df347e48f2ee711e9d263df657 388 Pfam PF13393 Histidyl-tRNA synthetase 7 315 5.3E-75 T 13-10-2018 AP3564_16165 ceec4e4e763fbea1d626a1520e57ea4d 72 Pfam PF06289 Flagellar protein (FlbD) 2 57 1.2E-24 T 13-10-2018 IPR009384 Swarming motility protein SwrD-like AP3564_11270 0113b14813dab919f1057c6464ff90fe 261 Gene3D G3DSA:3.90.226.10 3 202 3.1E-68 T 13-10-2018 AP3564_11270 0113b14813dab919f1057c6464ff90fe 261 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 258 1.3E-61 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AP3564_11270 0113b14813dab919f1057c6464ff90fe 261 Gene3D G3DSA:1.10.12.10 203 260 3.0E-15 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal AP3564_11270 0113b14813dab919f1057c6464ff90fe 261 SUPERFAMILY SSF52096 2 259 2.73E-77 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AP3564_09160 d70aa4952d99159af8dcd0bfc39c11f7 375 Pfam PF01548 Transposase 9 153 2.3E-26 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_09160 d70aa4952d99159af8dcd0bfc39c11f7 375 Pfam PF02371 Transposase IS116/IS110/IS902 family 253 338 1.6E-25 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_04530 2e351c92875d6c9d8e3e92309d93be86 172 Pfam PF03061 Thioesterase superfamily 27 101 7.6E-16 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AP3564_04530 2e351c92875d6c9d8e3e92309d93be86 172 SUPERFAMILY SSF54637 2 155 2.6E-43 T 13-10-2018 IPR029069 HotDog domain superfamily AP3564_04530 2e351c92875d6c9d8e3e92309d93be86 172 Gene3D G3DSA:3.10.129.10 1 167 1.2E-54 T 13-10-2018 AP3564_09790 c4a76cfd87b29d52e7ed5e5165196aed 73 Gene3D G3DSA:4.10.810.10 22 71 2.0E-9 T 13-10-2018 IPR027393 Virus scaffolding protein, C-terminal GO:0005515 AP3564_09790 c4a76cfd87b29d52e7ed5e5165196aed 73 Pfam PF08858 IDEAL domain 32 68 2.2E-13 T 13-10-2018 IPR014957 IDEAL domain AP3564_09790 c4a76cfd87b29d52e7ed5e5165196aed 73 SMART SM00914 32 68 1.1E-10 T 13-10-2018 IPR014957 IDEAL domain AP3564_17325 b350860bbf9c885b34cdbe56d70a74d4 193 PIRSF PIRSF029008 1 193 1.3E-52 T 13-10-2018 IPR008681 Negative regulator of genetic competence, MecA AP3564_17325 b350860bbf9c885b34cdbe56d70a74d4 193 Pfam PF05389 Negative regulator of genetic competence (MecA) 98 187 1.6E-16 T 13-10-2018 IPR008681 Negative regulator of genetic competence, MecA AP3564_17325 b350860bbf9c885b34cdbe56d70a74d4 193 Pfam PF05389 Negative regulator of genetic competence (MecA) 1 88 1.3E-24 T 13-10-2018 IPR008681 Negative regulator of genetic competence, MecA AP3564_17325 b350860bbf9c885b34cdbe56d70a74d4 193 Gene3D G3DSA:3.30.70.1950 103 193 4.0E-28 T 13-10-2018 IPR038471 MecA, C-terminal domain superfamily AP3564_17325 b350860bbf9c885b34cdbe56d70a74d4 193 Hamap MF_01124 Adapter protein MecA [mecA]. 1 192 23.268 T 13-10-2018 IPR008681 Negative regulator of genetic competence, MecA AP3564_14510 0bf4a584c35e183afdb5d03731008699 230 TIGRFAM TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit 6 227 3.1E-118 T 13-10-2018 IPR022501 Gallidermin ABC transporter, ATP-binding subunit AP3564_14510 0bf4a584c35e183afdb5d03731008699 230 Gene3D G3DSA:3.40.50.300 2 228 5.6E-62 T 13-10-2018 AP3564_14510 0bf4a584c35e183afdb5d03731008699 230 Pfam PF00005 ABC transporter 21 158 9.1E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_14510 0bf4a584c35e183afdb5d03731008699 230 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_14510 0bf4a584c35e183afdb5d03731008699 230 SMART SM00382 30 208 3.6E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_14510 0bf4a584c35e183afdb5d03731008699 230 SUPERFAMILY SSF52540 4 215 8.88E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_04665 0274782360a1eb7b6feda6de94a47e31 255 Gene3D G3DSA:3.30.750.70 73 133 3.8E-7 T 13-10-2018 AP3564_04665 0274782360a1eb7b6feda6de94a47e31 255 SMART SM00420 6 58 6.9E-21 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AP3564_04665 0274782360a1eb7b6feda6de94a47e31 255 SMART SM01134 73 234 5.5E-73 T 13-10-2018 AP3564_04665 0274782360a1eb7b6feda6de94a47e31 255 SUPERFAMILY SSF46785 4 74 1.28E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_04665 0274782360a1eb7b6feda6de94a47e31 255 Pfam PF00455 DeoR C terminal sensor domain 75 232 1.9E-54 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain AP3564_04665 0274782360a1eb7b6feda6de94a47e31 255 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.7E-7 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AP3564_04665 0274782360a1eb7b6feda6de94a47e31 255 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.7E-7 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AP3564_04665 0274782360a1eb7b6feda6de94a47e31 255 Gene3D G3DSA:1.10.10.10 1 54 7.0E-8 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_04665 0274782360a1eb7b6feda6de94a47e31 255 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AP3564_04665 0274782360a1eb7b6feda6de94a47e31 255 SUPERFAMILY SSF100950 75 234 9.3E-33 T 13-10-2018 IPR037171 NagB/RpiA transferase-like AP3564_04665 0274782360a1eb7b6feda6de94a47e31 255 Pfam PF08220 DeoR-like helix-turn-helix domain 6 58 8.2E-17 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AP3564_00680 d828ced310795ef18d141ae0b2a19e42 159 Pfam PF06505 Activator of aromatic catabolism 1 70 5.6E-9 T 13-10-2018 IPR010523 Activator of aromatic catabolism AP3564_00680 d828ced310795ef18d141ae0b2a19e42 159 ProDom PD485437 REGULATOR TRANSCRIPTIONAL FIS-TYPE HELIX-TURN-HELIX ACTIVATOR PLASMID FAMILY PHENOL-DEGRADATIVE FIS SIGMA-54 1 99 3.0E-10 T 13-10-2018 IPR010523 Activator of aromatic catabolism AP3564_00680 d828ced310795ef18d141ae0b2a19e42 159 Gene3D G3DSA:3.30.1380.20 1 146 2.0E-12 T 13-10-2018 AP3564_00680 d828ced310795ef18d141ae0b2a19e42 159 SMART SM00989 82 144 1.1E-20 T 13-10-2018 IPR004096 4-vinyl reductase, 4VR AP3564_00680 d828ced310795ef18d141ae0b2a19e42 159 SUPERFAMILY SSF111126 71 143 7.85E-12 T 13-10-2018 IPR024096 NO signalling/Golgi transport ligand-binding domain superfamily AP3564_00680 d828ced310795ef18d141ae0b2a19e42 159 Pfam PF02830 V4R domain 83 144 3.4E-14 T 13-10-2018 IPR004096 4-vinyl reductase, 4VR AP3564_01215 1ad089a758597da2446caa4ac01bb913 109 PIRSF PIRSF017292 3 109 1.3E-35 T 13-10-2018 IPR016694 Protein of unknown function UCP017292, zinc finger, CHY-type AP3564_01215 1ad089a758597da2446caa4ac01bb913 109 SUPERFAMILY SSF161219 10 95 3.14E-16 T 13-10-2018 IPR037274 Zinc finger, CHY-type superfamily GO:0008270 Reactome: R-HSA-110320|Reactome: R-HSA-983168 AP3564_01215 1ad089a758597da2446caa4ac01bb913 109 Pfam PF05495 CHY zinc finger 19 93 1.0E-9 T 13-10-2018 IPR008913 Zinc finger, CHY-type GO:0008270 Reactome: R-HSA-110320|Reactome: R-HSA-983168 AP3564_02980 8be6fd111cbd10382a644e12e6769e45 71 Gene3D G3DSA:1.10.8.910 11 71 4.2E-31 T 13-10-2018 IPR038300 SASP, alpha/beta-type superfamily AP3564_02980 8be6fd111cbd10382a644e12e6769e45 71 Pfam PF00269 Small, acid-soluble spore proteins, alpha/beta type 11 65 1.8E-22 T 13-10-2018 IPR001448 Small acid-soluble spore protein, alpha/beta-type GO:0003690|GO:0006265 AP3564_02980 8be6fd111cbd10382a644e12e6769e45 71 ProSitePatterns PS00684 Small, acid-soluble spore proteins, alpha/beta type, signature 2. 44 58 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 AP3564_02980 8be6fd111cbd10382a644e12e6769e45 71 ProSitePatterns PS00304 Small, acid-soluble spore proteins, alpha/beta type, signature 1. 26 35 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 AP3564_08735 bbed1a80e74c8033f8803b42852bf26b 260 Gene3D G3DSA:3.40.50.300 2 225 2.3E-61 T 13-10-2018 AP3564_08735 bbed1a80e74c8033f8803b42852bf26b 260 SUPERFAMILY SSF52540 9 245 1.46E-67 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_08735 bbed1a80e74c8033f8803b42852bf26b 260 SMART SM00382 34 231 1.2E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_08735 bbed1a80e74c8033f8803b42852bf26b 260 Pfam PF00005 ABC transporter 25 168 1.1E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_08735 bbed1a80e74c8033f8803b42852bf26b 260 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_09945 8921e78f6957d28b3289a4e41978033c 476 SMART SM00642 33 350 1.2E-38 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AP3564_09945 8921e78f6957d28b3289a4e41978033c 476 Gene3D G3DSA:2.60.40.1180 355 450 9.9E-28 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta AP3564_09945 8921e78f6957d28b3289a4e41978033c 476 SUPERFAMILY SSF51445 22 359 1.0E-71 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily AP3564_09945 8921e78f6957d28b3289a4e41978033c 476 Pfam PF00128 Alpha amylase, catalytic domain 60 148 5.7E-29 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AP3564_09945 8921e78f6957d28b3289a4e41978033c 476 Pfam PF00128 Alpha amylase, catalytic domain 153 323 1.8E-9 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AP3564_09945 8921e78f6957d28b3289a4e41978033c 476 Gene3D G3DSA:3.20.20.80 24 354 2.7E-93 T 13-10-2018 AP3564_09945 8921e78f6957d28b3289a4e41978033c 476 SUPERFAMILY SSF51011 359 438 1.59E-8 T 13-10-2018 AP3564_17170 1b1cfeaa58c00e015ec182d16ca95879 121 PIRSF PIRSF005965 1 121 2.2E-49 T 13-10-2018 IPR008243 Chorismate mutase, AroH class KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AP3564_17170 1b1cfeaa58c00e015ec182d16ca95879 121 Pfam PF07736 Chorismate mutase type I 2 118 3.4E-47 T 13-10-2018 IPR008243 Chorismate mutase, AroH class KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AP3564_17170 1b1cfeaa58c00e015ec182d16ca95879 121 SUPERFAMILY SSF55298 2 119 1.49E-46 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AP3564_17170 1b1cfeaa58c00e015ec182d16ca95879 121 Gene3D G3DSA:3.30.1330.40 1 121 3.3E-49 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AP3564_17170 1b1cfeaa58c00e015ec182d16ca95879 121 ProDom PD031888 MUTASE CHORISMATE AROH THE CLASS ISOMERASE TRANSCRIPTION BIOSYNTHESIS CM 3D-STRUCTURE 8 118 5.0E-34 T 13-10-2018 IPR008243 Chorismate mutase, AroH class KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AP3564_17170 1b1cfeaa58c00e015ec182d16ca95879 121 TIGRFAM TIGR01796 CM_mono_aroH: chorismate mutase 2 118 1.6E-46 T 13-10-2018 IPR008243 Chorismate mutase, AroH class KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AP3564_03200 2b53fa1e3da13e018016d1436c20720b 322 Pfam PF02653 Branched-chain amino acid transport system / permease component 9 290 6.6E-31 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AP3564_15215 3219cf4174c073f671a17619aaf471bd 383 Pfam PF06114 IrrE N-terminal-like domain 195 294 5.9E-17 T 13-10-2018 IPR010359 IrrE N-terminal-like domain AP3564_02355 9392869f024c411a238b46bd2d35bdf1 271 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 2 270 17.594 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 AP3564_02355 9392869f024c411a238b46bd2d35bdf1 271 Pfam PF02673 Bacitracin resistance protein BacA 7 265 6.9E-79 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 AP3564_02355 9392869f024c411a238b46bd2d35bdf1 271 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 7 263 5.1E-90 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 AP3564_13170 7baa4953045401adf6eece3ec4f1e194 159 Pfam PF03862 SpoVAC/SpoVAEB sporulation membrane protein 32 149 1.5E-38 T 13-10-2018 IPR005562 SpoVA AP3564_13170 7baa4953045401adf6eece3ec4f1e194 159 TIGRFAM TIGR02838 spore_V_AC: stage V sporulation protein AC 14 153 6.6E-61 T 13-10-2018 IPR014203 Sporulation stage V, protein AC AP3564_15195 c8624391352e8f67f75ff304dd098740 384 Pfam PF07282 Putative transposase DNA-binding domain 289 359 2.4E-24 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal AP3564_15195 c8624391352e8f67f75ff304dd098740 384 Pfam PF01385 Probable transposase 164 275 1.8E-26 T 13-10-2018 IPR001959 Probable transposase, IS891/IS1136/IS1341 AP3564_15195 c8624391352e8f67f75ff304dd098740 384 TIGRFAM TIGR01766 tspaseT_teng_C: transposase, IS605 OrfB family 243 316 1.2E-14 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal AP3564_15195 c8624391352e8f67f75ff304dd098740 384 Pfam PF12323 Helix-turn-helix domain 2 48 2.1E-22 T 13-10-2018 IPR021027 Transposase, putative, helix-turn-helix domain AP3564_05770 a8917c121da0a49ab2d03500c27bd7fd 87 SUPERFAMILY SSF50249 7 84 6.0E-32 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AP3564_05770 a8917c121da0a49ab2d03500c27bd7fd 87 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 7 82 24.747 T 13-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05770 a8917c121da0a49ab2d03500c27bd7fd 87 Pfam PF00366 Ribosomal protein S17 12 79 3.4E-33 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05770 a8917c121da0a49ab2d03500c27bd7fd 87 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 7 78 2.5E-36 T 13-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05770 a8917c121da0a49ab2d03500c27bd7fd 87 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 7 78 8.0E-33 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05770 a8917c121da0a49ab2d03500c27bd7fd 87 PRINTS PR00973 Ribosomal protein S17 family signature 68 75 1.4E-12 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05770 a8917c121da0a49ab2d03500c27bd7fd 87 PRINTS PR00973 Ribosomal protein S17 family signature 58 68 1.4E-12 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05770 a8917c121da0a49ab2d03500c27bd7fd 87 PRINTS PR00973 Ribosomal protein S17 family signature 26 49 1.4E-12 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05770 a8917c121da0a49ab2d03500c27bd7fd 87 ProSitePatterns PS00056 Ribosomal protein S17 signature. 58 70 - T 13-10-2018 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AP3564_05770 a8917c121da0a49ab2d03500c27bd7fd 87 Gene3D G3DSA:2.40.50.140 6 86 1.4E-36 T 13-10-2018 AP3564_08155 484b077383ea0583bc1835c3d5d00cb2 166 Pfam PF08882 Acetone carboxylase gamma subunit 46 158 7.4E-53 T 13-10-2018 IPR016750 Acetophenone carboxylase beta subunit/Acetone carboxylase gamma subunit AP3564_08155 484b077383ea0583bc1835c3d5d00cb2 166 PIRSF PIRSF019217 1 166 7.1E-69 T 13-10-2018 IPR016750 Acetophenone carboxylase beta subunit/Acetone carboxylase gamma subunit AP3564_04230 7d9752cef79423f281c24356a136da3b 276 SUPERFAMILY SSF51695 24 262 1.81E-74 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 AP3564_04230 7d9752cef79423f281c24356a136da3b 276 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 31 258 3.0E-47 T 13-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 AP3564_04230 7d9752cef79423f281c24356a136da3b 276 Gene3D G3DSA:3.20.20.190 14 270 1.9E-84 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 AP3564_09540 3866f7a44441e44f80c159df3a2e5b9f 260 SUPERFAMILY SSF53474 18 259 1.25E-43 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold AP3564_09540 3866f7a44441e44f80c159df3a2e5b9f 260 Pfam PF00326 Prolyl oligopeptidase family 70 259 3.2E-20 T 13-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 AP3564_09540 3866f7a44441e44f80c159df3a2e5b9f 260 ProSitePatterns PS00708 Prolyl endopeptidase family serine active site. 102 132 - T 13-10-2018 IPR002471 Peptidase S9, serine active site GO:0004252|GO:0006508 AP3564_09540 3866f7a44441e44f80c159df3a2e5b9f 260 Gene3D G3DSA:3.40.50.1820 24 260 1.4E-41 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold AP3564_14005 e79f98c27b168c600bc17d1c66d0da27 75 SUPERFAMILY SSF64307 4 74 4.06E-22 T 13-10-2018 IPR036868 TusA-like domain superfamily AP3564_14005 e79f98c27b168c600bc17d1c66d0da27 75 Pfam PF01206 Sulfurtransferase TusA 6 74 5.2E-21 T 13-10-2018 IPR001455 TusA-like domain AP3564_14005 e79f98c27b168c600bc17d1c66d0da27 75 Gene3D G3DSA:3.30.110.40 1 75 5.8E-25 T 13-10-2018 IPR036868 TusA-like domain superfamily AP3564_19290 fffafcc86fb7289f995f2b1f0c9efa2b 275 PIRSF PIRSF012563 1 275 7.7E-87 T 13-10-2018 IPR014199 Sporulation protein YtxC AP3564_19290 fffafcc86fb7289f995f2b1f0c9efa2b 275 Pfam PF08812 YtxC-like family 56 264 3.1E-57 T 13-10-2018 IPR014199 Sporulation protein YtxC AP3564_19290 fffafcc86fb7289f995f2b1f0c9efa2b 275 TIGRFAM TIGR02834 spo_ytxC: putative sporulation protein YtxC 38 265 4.5E-69 T 13-10-2018 IPR014199 Sporulation protein YtxC AP3564_16140 55bce267105510628227ac84007abe8a 213 Pfam PF04347 Flagellar biosynthesis protein, FliO 99 173 1.7E-12 T 13-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 AP3564_06075 7c6f2194444d701121b760b646b56b7b 417 Pfam PF01609 Transposase DDE domain 124 336 1.3E-30 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_06075 7c6f2194444d701121b760b646b56b7b 417 SUPERFAMILY SSF53098 77 362 7.43E-43 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_12350 3e25e9a2d6881e55fa9b5652c2443755 123 SUPERFAMILY SSF53850 4 122 1.39E-25 T 13-10-2018 AP3564_12350 3e25e9a2d6881e55fa9b5652c2443755 123 Gene3D G3DSA:3.40.190.10 1 123 4.3E-39 T 13-10-2018 AP3564_12350 3e25e9a2d6881e55fa9b5652c2443755 123 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 8 115 4.3E-22 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain AP3564_10420 c4f1da8b9b45a1bcf822803138678928 262 Gene3D G3DSA:1.10.12.10 205 262 1.1E-21 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal AP3564_10420 c4f1da8b9b45a1bcf822803138678928 262 SUPERFAMILY SSF52096 5 261 1.31E-81 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AP3564_10420 c4f1da8b9b45a1bcf822803138678928 262 Pfam PF00378 Enoyl-CoA hydratase/isomerase 20 261 1.4E-60 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AP3564_10420 c4f1da8b9b45a1bcf822803138678928 262 Gene3D G3DSA:3.90.226.10 1 202 3.9E-64 T 13-10-2018 AP3564_18145 bb7bcb326671617f0dd589fd73852b2c 195 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 10 187 5.2E-54 T 13-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase AP3564_18145 bb7bcb326671617f0dd589fd73852b2c 195 PIRSF PIRSF006806 6 190 2.1E-49 T 13-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase AP3564_18145 bb7bcb326671617f0dd589fd73852b2c 195 Gene3D G3DSA:3.40.50.10420 6 194 1.7E-62 T 13-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily AP3564_18145 bb7bcb326671617f0dd589fd73852b2c 195 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 10 187 5.4E-43 T 13-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase AP3564_18145 bb7bcb326671617f0dd589fd73852b2c 195 SUPERFAMILY SSF100950 10 193 1.33E-48 T 13-10-2018 IPR037171 NagB/RpiA transferase-like AP3564_00180 56742aac430aa21933beb6a5b840e535 275 Pfam PF02361 Cobalt transport protein 12 235 4.3E-33 T 13-10-2018 IPR003339 ABC/ECF transporter, transmembrane component AP3564_14135 c853afc6dc037ca8dbb9941152c05bc6 256 Pfam PF03744 6-carboxyhexanoate--CoA ligase 7 250 2.8E-84 T 13-10-2018 IPR005499 6-carboxyhexanoate--CoA ligase GO:0005524|GO:0009102|GO:0042410 KEGG: 00780+6.2.1.14|MetaCyc: PWY-6578 AP3564_14135 c853afc6dc037ca8dbb9941152c05bc6 256 TIGRFAM TIGR01204 bioW: 6-carboxyhexanoate--CoA ligase 20 250 7.8E-97 T 13-10-2018 IPR005499 6-carboxyhexanoate--CoA ligase GO:0005524|GO:0009102|GO:0042410 KEGG: 00780+6.2.1.14|MetaCyc: PWY-6578 AP3564_14135 c853afc6dc037ca8dbb9941152c05bc6 256 ProDom PD017229 LIGASE SYNTHASE BIOTIN MAGNESIUM PIMELOYL-COA 6-CARBOXYHEXANOATE--COA BIOSYNTHESIS 6-CARBOXYHEXANOATE-COA BIOW COA 1 224 2.0E-83 T 13-10-2018 IPR005499 6-carboxyhexanoate--CoA ligase GO:0005524|GO:0009102|GO:0042410 KEGG: 00780+6.2.1.14|MetaCyc: PWY-6578 AP3564_14135 c853afc6dc037ca8dbb9941152c05bc6 256 Hamap MF_00668 6-carboxyhexanoate--CoA ligase [bioW]. 6 251 51.977 T 13-10-2018 IPR005499 6-carboxyhexanoate--CoA ligase GO:0005524|GO:0009102|GO:0042410 KEGG: 00780+6.2.1.14|MetaCyc: PWY-6578 AP3564_14175 81b79bfcc6ad907840916f47c480d539 453 Pfam PF13546 DDE superfamily endonuclease 74 258 6.2E-22 T 13-10-2018 IPR038721 Transposase IS701-like, DDE domain AP3564_14175 81b79bfcc6ad907840916f47c480d539 453 SUPERFAMILY SSF53098 51 428 6.14E-54 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_13105 0102cbc05b2625e97fc4c6004241d5ba 86 PIRSF PIRSF010606 1 86 3.6E-39 T 13-10-2018 IPR016571 Spore coat assembly protein CotJB AP3564_13105 0102cbc05b2625e97fc4c6004241d5ba 86 Pfam PF12652 CotJB protein 10 85 4.8E-27 T 13-10-2018 IPR024207 Spore coat assembly protein CotJB, domain AP3564_01565 8a7156f6444a3b4bc20961997d2f6dac 190 ProSitePatterns PS01081 TetR-type HTH domain signature. 21 52 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AP3564_01565 8a7156f6444a3b4bc20961997d2f6dac 190 SUPERFAMILY SSF48498 82 189 1.22E-12 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AP3564_01565 8a7156f6444a3b4bc20961997d2f6dac 190 Pfam PF00440 Bacterial regulatory proteins, tetR family 9 55 2.1E-16 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_01565 8a7156f6444a3b4bc20961997d2f6dac 190 Gene3D G3DSA:1.10.357.10 2 189 2.3E-38 T 13-10-2018 AP3564_01565 8a7156f6444a3b4bc20961997d2f6dac 190 SUPERFAMILY SSF46689 4 78 7.48E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_01565 8a7156f6444a3b4bc20961997d2f6dac 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 30 53 2.8E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_01565 8a7156f6444a3b4bc20961997d2f6dac 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 9 22 2.8E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_11970 6555ca723c9401e3e98761dbb6191cda 151 Pfam PF00571 CBS domain 86 139 9.2E-6 T 13-10-2018 IPR000644 CBS domain AP3564_11970 6555ca723c9401e3e98761dbb6191cda 151 SUPERFAMILY SSF54631 12 140 3.18E-29 T 13-10-2018 AP3564_11970 6555ca723c9401e3e98761dbb6191cda 151 Gene3D G3DSA:3.10.580.10 1 146 1.2E-53 T 13-10-2018 AP3564_05085 db891ffe22ce1c0f45ace69f9b7a9a2c 291 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 93 104 - T 13-10-2018 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 AP3564_05085 db891ffe22ce1c0f45ace69f9b7a9a2c 291 Gene3D G3DSA:3.40.1010.10 2 122 4.8E-46 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 AP3564_05085 db891ffe22ce1c0f45ace69f9b7a9a2c 291 Gene3D G3DSA:3.30.950.10 123 238 8.5E-44 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 AP3564_05085 db891ffe22ce1c0f45ace69f9b7a9a2c 291 PIRSF PIRSF005917 3 291 3.1E-105 T 13-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 AP3564_05085 db891ffe22ce1c0f45ace69f9b7a9a2c 291 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 16 214 7.7E-29 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 AP3564_05085 db891ffe22ce1c0f45ace69f9b7a9a2c 291 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 16 289 2.7E-86 T 13-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 AP3564_05085 db891ffe22ce1c0f45ace69f9b7a9a2c 291 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 15 233 37.354 T 13-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 AP3564_05085 db891ffe22ce1c0f45ace69f9b7a9a2c 291 SUPERFAMILY SSF53790 13 231 2.88E-83 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 AP3564_00930 33edd9a9f0a498de5f2aaeab79a0d5b2 118 Pfam PF05717 IS66 Orf2 like protein 9 107 3.7E-40 T 13-10-2018 IPR008878 Transposase IS66, Orf2 AP3564_10720 33edd9a9f0a498de5f2aaeab79a0d5b2 118 Pfam PF05717 IS66 Orf2 like protein 9 107 3.7E-40 T 13-10-2018 IPR008878 Transposase IS66, Orf2 AP3564_05465 33edd9a9f0a498de5f2aaeab79a0d5b2 118 Pfam PF05717 IS66 Orf2 like protein 9 107 3.7E-40 T 13-10-2018 IPR008878 Transposase IS66, Orf2 AP3564_14425 33edd9a9f0a498de5f2aaeab79a0d5b2 118 Pfam PF05717 IS66 Orf2 like protein 9 107 3.7E-40 T 13-10-2018 IPR008878 Transposase IS66, Orf2 AP3564_17890 e72cbf221e3613972d30e2e42670eeb2 405 Pfam PF09546 Stage III sporulation protein AE (spore_III_AE) 83 398 7.5E-106 T 13-10-2018 IPR014194 Sporulation stage III, protein AE AP3564_17890 e72cbf221e3613972d30e2e42670eeb2 405 TIGRFAM TIGR02829 spore_III_AE: stage III sporulation protein AE 11 397 1.1E-143 T 13-10-2018 IPR014194 Sporulation stage III, protein AE AP3564_09240 04f65a454fc5c4bb49613e8f5f85f88d 145 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 12 136 5.0E-34 T 13-10-2018 IPR007182 Na+/H+ antiporter MnhB subunit-related protein AP3564_01745 c48983dffc0b48d5c33894c950c3ab25 133 SUPERFAMILY SSF158911 33 119 2.35E-5 T 13-10-2018 IPR037250 NEAT domain superfamily AP3564_01745 c48983dffc0b48d5c33894c950c3ab25 133 Gene3D G3DSA:2.60.40.1850 31 126 2.4E-5 T 13-10-2018 AP3564_14805 40925af7a9fd14efe7531ff48b8fbc23 72 Hamap MF_00363 UPF0154 protein . 2 72 22.586 T 13-10-2018 IPR005359 Protein with unknown function UPF0154 AP3564_14805 40925af7a9fd14efe7531ff48b8fbc23 72 Pfam PF03672 Uncharacterised protein family (UPF0154) 11 69 7.1E-30 T 13-10-2018 IPR005359 Protein with unknown function UPF0154 AP3564_14805 40925af7a9fd14efe7531ff48b8fbc23 72 ProDom PD048972 UPF0154 TRANSMEMBRANE MEMBRANE UNCHARACTERIZED FAMILY YNEF SUPERFAMILY MG335.1 EXPORTED MYCGA5700 1 41 0.003 T 13-10-2018 IPR005359 Protein with unknown function UPF0154 AP3564_14035 3fbe1077994af90701a00656c730aeb3 301 Gene3D G3DSA:1.10.10.10 2 90 1.3E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_14035 3fbe1077994af90701a00656c730aeb3 301 SUPERFAMILY SSF46785 4 110 4.95E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_14035 3fbe1077994af90701a00656c730aeb3 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 38 49 1.2E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_14035 3fbe1077994af90701a00656c730aeb3 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 17 28 1.2E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_14035 3fbe1077994af90701a00656c730aeb3 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 38 1.2E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_14035 3fbe1077994af90701a00656c730aeb3 301 Gene3D G3DSA:3.40.190.290 91 297 1.5E-49 T 13-10-2018 AP3564_14035 3fbe1077994af90701a00656c730aeb3 301 Pfam PF03466 LysR substrate binding domain 88 291 5.9E-51 T 13-10-2018 IPR005119 LysR, substrate-binding AP3564_14035 3fbe1077994af90701a00656c730aeb3 301 SUPERFAMILY SSF53850 89 293 9.42E-47 T 13-10-2018 AP3564_14035 3fbe1077994af90701a00656c730aeb3 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 60 2.1E-19 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AP3564_03820 d23c70d09c3ccfcc18424bb8c5fe27d4 91 Gene3D G3DSA:1.10.10.60 1 91 1.9E-42 T 13-10-2018 AP3564_03820 d23c70d09c3ccfcc18424bb8c5fe27d4 91 TIGRFAM TIGR02844 spore_III_D: sporulation transcriptional regulator SpoIIID 2 81 5.2E-46 T 13-10-2018 IPR014208 Sporulation stage III, transcriptional regulator SpoIIID AP3564_03820 d23c70d09c3ccfcc18424bb8c5fe27d4 91 Pfam PF12116 Stage III sporulation protein D 2 82 6.8E-41 T 13-10-2018 IPR014208 Sporulation stage III, transcriptional regulator SpoIIID AP3564_03820 d23c70d09c3ccfcc18424bb8c5fe27d4 91 ProSitePatterns PS00894 DeoR-type HTH domain signature. 8 41 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AP3564_04715 0c6bbe4e319cb8bb334e115cd79787e0 264 SUPERFAMILY SSF56281 2 231 1.57E-45 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AP3564_04715 0c6bbe4e319cb8bb334e115cd79787e0 264 SMART SM00849 13 218 5.7E-14 T 13-10-2018 IPR001279 Metallo-beta-lactamase AP3564_04715 0c6bbe4e319cb8bb334e115cd79787e0 264 Gene3D G3DSA:3.60.15.10 8 250 8.0E-45 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AP3564_04715 0c6bbe4e319cb8bb334e115cd79787e0 264 Pfam PF12706 Beta-lactamase superfamily domain 24 218 3.5E-25 T 13-10-2018 IPR001279 Metallo-beta-lactamase AP3564_13055 2d32769d9113a02ac8c0d44780180e84 638 SMART SM00327 442 633 4.0E-10 T 13-10-2018 IPR002035 von Willebrand factor, type A AP3564_13055 2d32769d9113a02ac8c0d44780180e84 638 Gene3D G3DSA:3.40.50.410 444 634 1.8E-10 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AP3564_13055 2d32769d9113a02ac8c0d44780180e84 638 Pfam PF00092 von Willebrand factor type A domain 447 623 1.8E-5 T 13-10-2018 IPR002035 von Willebrand factor, type A AP3564_13055 2d32769d9113a02ac8c0d44780180e84 638 SUPERFAMILY SSF53300 446 632 6.23E-16 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AP3564_12335 4a47cc3b596e5ab3bb791a1f24054b7f 249 SUPERFAMILY SSF46785 5 66 3.74E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_12335 4a47cc3b596e5ab3bb791a1f24054b7f 249 SUPERFAMILY SSF100950 74 224 6.0E-34 T 13-10-2018 IPR037171 NagB/RpiA transferase-like AP3564_12335 4a47cc3b596e5ab3bb791a1f24054b7f 249 SMART SM01134 73 231 3.0E-70 T 13-10-2018 AP3564_12335 4a47cc3b596e5ab3bb791a1f24054b7f 249 SMART SM00420 6 58 1.1E-19 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AP3564_12335 4a47cc3b596e5ab3bb791a1f24054b7f 249 Gene3D G3DSA:1.10.10.10 2 55 2.4E-5 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_12335 4a47cc3b596e5ab3bb791a1f24054b7f 249 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 3.8E-8 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AP3564_12335 4a47cc3b596e5ab3bb791a1f24054b7f 249 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 3.8E-8 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AP3564_12335 4a47cc3b596e5ab3bb791a1f24054b7f 249 Pfam PF08220 DeoR-like helix-turn-helix domain 6 61 3.7E-17 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AP3564_12335 4a47cc3b596e5ab3bb791a1f24054b7f 249 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AP3564_12335 4a47cc3b596e5ab3bb791a1f24054b7f 249 Pfam PF00455 DeoR C terminal sensor domain 75 230 9.9E-50 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain AP3564_12415 78dd038b2f1c98858af7867f32c68f91 408 Pfam PF12698 ABC-2 family transporter protein 19 382 7.0E-33 T 13-10-2018 AP3564_04330 c9bfc692babd9beb5330c42ee08f237e 370 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 18 366 5.9E-14 T 13-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 AP3564_04330 c9bfc692babd9beb5330c42ee08f237e 370 Gene3D G3DSA:3.20.20.210 8 370 3.3E-135 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 AP3564_04330 c9bfc692babd9beb5330c42ee08f237e 370 SUPERFAMILY SSF51726 16 370 7.19E-85 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 AP3564_07810 a612401ef59bf5cff0c9be063d8f910c 239 Pfam PF03692 Putative zinc- or iron-chelating domain 68 169 5.5E-8 T 13-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein AP3564_17090 780284b2bf32542468f499968e9b57c4 170 Pfam PF08802 Cytochrome B6-F complex Fe-S subunit 9 38 3.8E-6 T 13-10-2018 IPR014909 Cytochrome b6-f complex Fe-S subunit GO:0009496|GO:0042651|GO:0051537|GO:0055114 KEGG: 00195+1.10.9.1|MetaCyc: PWY-101 AP3564_17090 780284b2bf32542468f499968e9b57c4 170 SUPERFAMILY SSF50022 3 161 2.62E-31 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AP3564_17090 780284b2bf32542468f499968e9b57c4 170 Gene3D G3DSA:2.102.10.10 43 167 7.5E-25 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AP3564_17090 780284b2bf32542468f499968e9b57c4 170 Pfam PF00355 Rieske [2Fe-2S] domain 57 150 1.8E-14 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AP3564_17630 df3160c13d3477c7500775ca924cd8a2 109 Pfam PF08863 YolD-like protein 14 107 6.6E-29 T 13-10-2018 IPR014962 YolD-like protein AP3564_11510 9535892069c6dbf6163aa52328944a9e 499 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 63 88 1.9E-12 T 13-10-2018 AP3564_11510 9535892069c6dbf6163aa52328944a9e 499 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 205 226 1.9E-12 T 13-10-2018 AP3564_11510 9535892069c6dbf6163aa52328944a9e 499 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 227 253 1.9E-12 T 13-10-2018 AP3564_11510 9535892069c6dbf6163aa52328944a9e 499 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 293 305 1.9E-12 T 13-10-2018 AP3564_11510 9535892069c6dbf6163aa52328944a9e 499 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 47 101 7.6E-8 T 13-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AP3564_11510 9535892069c6dbf6163aa52328944a9e 499 Pfam PF00361 Proton-conducting membrane transporter 115 391 1.4E-46 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AP3564_10185 2d75ef164ba0f9851c3539c14897f695 209 Pfam PF04607 Region found in RelA / SpoT proteins 45 164 8.7E-36 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 AP3564_10185 2d75ef164ba0f9851c3539c14897f695 209 SMART SM00954 45 166 3.6E-42 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 AP3564_10185 2d75ef164ba0f9851c3539c14897f695 209 Gene3D G3DSA:1.10.287.860 149 209 8.6E-29 T 13-10-2018 AP3564_10185 2d75ef164ba0f9851c3539c14897f695 209 SUPERFAMILY SSF81301 5 199 7.85E-60 T 13-10-2018 AP3564_10185 2d75ef164ba0f9851c3539c14897f695 209 Gene3D G3DSA:3.30.460.10 1 148 3.5E-53 T 13-10-2018 AP3564_17355 524328d20970c621baf9639716da6c01 82 Pfam PF13370 4Fe-4S single cluster domain of Ferredoxin I 7 68 7.8E-22 T 13-10-2018 AP3564_17355 524328d20970c621baf9639716da6c01 82 Gene3D G3DSA:3.30.70.20 2 82 3.4E-36 T 13-10-2018 AP3564_17355 524328d20970c621baf9639716da6c01 82 SUPERFAMILY SSF54862 3 73 1.4E-13 T 13-10-2018 AP3564_17355 524328d20970c621baf9639716da6c01 82 PRINTS PR00352 3Fe-4S ferredoxin signature 55 67 7.0E-8 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 AP3564_17355 524328d20970c621baf9639716da6c01 82 PRINTS PR00352 3Fe-4S ferredoxin signature 7 18 7.0E-8 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 AP3564_17355 524328d20970c621baf9639716da6c01 82 PRINTS PR00352 3Fe-4S ferredoxin signature 18 28 7.0E-8 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 AP3564_13220 78ed2587eb31fe08a77225f0db10378f 110 Pfam PF04341 Protein of unknown function, DUF485 23 106 4.1E-22 T 13-10-2018 IPR007436 Protein of unknown function DUF485 AP3564_04500 58e76e6e32150953a5e7d4356e074a97 425 Pfam PF00375 Sodium:dicarboxylate symporter family 6 401 5.5E-125 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AP3564_04500 58e76e6e32150953a5e7d4356e074a97 425 Gene3D G3DSA:1.10.3860.10 1 420 4.8E-138 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 AP3564_04500 58e76e6e32150953a5e7d4356e074a97 425 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 36 51 - T 13-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site AP3564_04500 58e76e6e32150953a5e7d4356e074a97 425 SUPERFAMILY SSF118215 6 402 6.54E-128 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 AP3564_04500 58e76e6e32150953a5e7d4356e074a97 425 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 296 319 - T 13-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site AP3564_04500 58e76e6e32150953a5e7d4356e074a97 425 PRINTS PR00173 Glutamate-aspartate symporter signature 293 319 2.0E-35 T 13-10-2018 AP3564_04500 58e76e6e32150953a5e7d4356e074a97 425 PRINTS PR00173 Glutamate-aspartate symporter signature 193 212 2.0E-35 T 13-10-2018 AP3564_04500 58e76e6e32150953a5e7d4356e074a97 425 PRINTS PR00173 Glutamate-aspartate symporter signature 74 99 2.0E-35 T 13-10-2018 AP3564_04500 58e76e6e32150953a5e7d4356e074a97 425 PRINTS PR00173 Glutamate-aspartate symporter signature 328 347 2.0E-35 T 13-10-2018 AP3564_04500 58e76e6e32150953a5e7d4356e074a97 425 PRINTS PR00173 Glutamate-aspartate symporter signature 4 24 2.0E-35 T 13-10-2018 AP3564_04500 58e76e6e32150953a5e7d4356e074a97 425 PRINTS PR00173 Glutamate-aspartate symporter signature 355 375 2.0E-35 T 13-10-2018 AP3564_04500 58e76e6e32150953a5e7d4356e074a97 425 PRINTS PR00173 Glutamate-aspartate symporter signature 146 168 2.0E-35 T 13-10-2018 AP3564_16675 3111b1897a9141d1d25ec69f574fbd07 368 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 3 362 34.158 T 13-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AP3564_16675 3111b1897a9141d1d25ec69f574fbd07 368 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 189 354 2.9E-42 T 13-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 AP3564_16675 3111b1897a9141d1d25ec69f574fbd07 368 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 1 357 1.9E-104 T 13-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AP3564_16675 3111b1897a9141d1d25ec69f574fbd07 368 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 3 143 3.2E-48 T 13-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AP3564_16675 3111b1897a9141d1d25ec69f574fbd07 368 Gene3D G3DSA:3.40.50.2000 1 177 2.1E-62 T 13-10-2018 AP3564_16675 3111b1897a9141d1d25ec69f574fbd07 368 Gene3D G3DSA:3.40.50.2000 178 345 6.6E-50 T 13-10-2018 AP3564_16675 3111b1897a9141d1d25ec69f574fbd07 368 SUPERFAMILY SSF53756 1 362 7.97E-108 T 13-10-2018 AP3564_09595 ea641eb9dd2be608198a121ab4f4befe 359 Pfam PF10776 Protein of unknown function (DUF2600) 20 348 4.5E-152 T 13-10-2018 IPR019712 Protein of unknown function DUF2600 AP3564_16855 a859a8269c54edac53155ef5502cbb6a 109 TIGRFAM TIGR02908 CoxD_Bacillus: cytochrome c oxidase, subunit IVB 4 109 3.7E-52 T 13-10-2018 IPR014257 Cytochrome c oxidase, subunit IV bacillaceae KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 AP3564_16855 a859a8269c54edac53155ef5502cbb6a 109 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 29 100 2.3E-14 T 13-10-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 AP3564_09275 f60c82101bda44194e1f25b035043e3c 388 Pfam PF00155 Aminotransferase class I and II 42 379 8.2E-35 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AP3564_09275 f60c82101bda44194e1f25b035043e3c 388 SUPERFAMILY SSF53383 2 387 4.89E-94 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_09275 f60c82101bda44194e1f25b035043e3c 388 Gene3D G3DSA:3.40.640.10 67 291 4.8E-148 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_09275 f60c82101bda44194e1f25b035043e3c 388 Gene3D G3DSA:3.90.1150.10 12 383 4.8E-148 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_09275 f60c82101bda44194e1f25b035043e3c 388 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 4 387 1.3E-149 T 13-10-2018 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 AP3564_02935 77217a579a155958ec63667c0df479e3 146 Gene3D G3DSA:2.60.40.790 5 144 3.0E-40 T 13-10-2018 IPR008978 HSP20-like chaperone AP3564_02935 77217a579a155958ec63667c0df479e3 146 Pfam PF00011 Hsp20/alpha crystallin family 43 144 4.7E-24 T 13-10-2018 IPR002068 Alpha crystallin/Hsp20 domain AP3564_02935 77217a579a155958ec63667c0df479e3 146 SUPERFAMILY SSF49764 9 144 3.14E-39 T 13-10-2018 IPR008978 HSP20-like chaperone AP3564_19440 b110c2358ebb1357f0e2ef2b9c5f8c5c 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 2.0E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_19440 b110c2358ebb1357f0e2ef2b9c5f8c5c 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 2.0E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_19440 b110c2358ebb1357f0e2ef2b9c5f8c5c 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 9.9E-31 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_19440 b110c2358ebb1357f0e2ef2b9c5f8c5c 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 9.9E-31 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_19440 b110c2358ebb1357f0e2ef2b9c5f8c5c 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 9.9E-31 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_19440 b110c2358ebb1357f0e2ef2b9c5f8c5c 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 9.9E-31 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_19440 b110c2358ebb1357f0e2ef2b9c5f8c5c 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 9.9E-31 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_19440 b110c2358ebb1357f0e2ef2b9c5f8c5c 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 9.9E-31 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AP3564_19440 b110c2358ebb1357f0e2ef2b9c5f8c5c 253 Gene3D G3DSA:3.40.50.720 1 253 1.2E-65 T 13-10-2018 AP3564_19440 b110c2358ebb1357f0e2ef2b9c5f8c5c 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 240 1.7E-49 T 13-10-2018 AP3564_19440 b110c2358ebb1357f0e2ef2b9c5f8c5c 253 SUPERFAMILY SSF51735 2 244 1.15E-61 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_13770 6fa9ebb866c8d250d2b122c998be4e2c 300 SUPERFAMILY SSF46689 234 271 3.94E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_13770 6fa9ebb866c8d250d2b122c998be4e2c 300 Gene3D G3DSA:1.10.10.2840 179 300 1.3E-15 T 13-10-2018 AP3564_13770 6fa9ebb866c8d250d2b122c998be4e2c 300 Pfam PF13556 PucR C-terminal helix-turn-helix domain 237 293 9.5E-16 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain AP3564_12110 9a20b45b3fadc7443ee838449f92c7f4 371 Pfam PF14294 Domain of unknown function (DUF4372) 8 76 6.3E-8 T 13-10-2018 IPR025399 Domain of unknown function DUF4372 AP3564_12110 9a20b45b3fadc7443ee838449f92c7f4 371 SUPERFAMILY SSF53098 88 359 1.14E-34 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_12110 9a20b45b3fadc7443ee838449f92c7f4 371 Pfam PF01609 Transposase DDE domain 121 329 2.3E-29 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_06540 7e89cd652b5d4e8829f8aacc44318e9c 341 Pfam PF00296 Luciferase-like monooxygenase 29 313 5.9E-36 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AP3564_06540 7e89cd652b5d4e8829f8aacc44318e9c 341 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 15 336 3.4E-136 T 13-10-2018 IPR019949 Luciferase family oxidoreductase, group 1 AP3564_06540 7e89cd652b5d4e8829f8aacc44318e9c 341 SUPERFAMILY SSF51679 13 336 4.36E-84 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AP3564_06540 7e89cd652b5d4e8829f8aacc44318e9c 341 Gene3D G3DSA:3.20.20.30 10 339 1.5E-98 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AP3564_04010 524f2eb8aafcf198c6d8284759898e28 190 SUPERFAMILY SSF52540 1 140 2.42E-38 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_04010 524f2eb8aafcf198c6d8284759898e28 190 Gene3D G3DSA:3.40.50.300 1 139 2.1E-28 T 13-10-2018 AP3564_04010 524f2eb8aafcf198c6d8284759898e28 190 Pfam PF00265 Thymidine kinase 3 185 1.3E-49 T 13-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 AP3564_04010 524f2eb8aafcf198c6d8284759898e28 190 ProSitePatterns PS00603 Thymidine kinase cellular-type signature. 172 185 - T 13-10-2018 IPR020633 Thymidine kinase, conserved site GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 AP3564_04010 524f2eb8aafcf198c6d8284759898e28 190 Hamap MF_00124 Thymidine kinase [tdk]. 1 188 34.416 T 13-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 AP3564_04010 524f2eb8aafcf198c6d8284759898e28 190 PIRSF PIRSF035805 1 189 4.1E-60 T 13-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 AP3564_04010 524f2eb8aafcf198c6d8284759898e28 190 Gene3D G3DSA:3.30.60.20 141 187 1.1E-14 T 13-10-2018 AP3564_04010 524f2eb8aafcf198c6d8284759898e28 190 SUPERFAMILY SSF57716 140 188 3.04E-19 T 13-10-2018 AP3564_16495 3f7265938d5ff623ee52d14230501fb5 73 Pfam PF13046 Protein of unknown function (DUF3906) 1 64 4.8E-26 T 13-10-2018 IPR024998 Protein of unknown function DUF3906 AP3564_18055 5ca55b632b1bd3c24ba3a0a6111d9972 155 Pfam PF15980 Putative Competence protein ComGF 45 141 9.0E-19 T 13-10-2018 IPR016977 Competence operon G, ComGF AP3564_04845 98c9acbda8484004cec0b7450b31b9e5 257 PRINTS PR01900 YidC translocation/secretion protein signature 43 59 4.4E-8 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AP3564_04845 98c9acbda8484004cec0b7450b31b9e5 257 PRINTS PR01900 YidC translocation/secretion protein signature 175 190 4.4E-8 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AP3564_04845 98c9acbda8484004cec0b7450b31b9e5 257 PRINTS PR01900 YidC translocation/secretion protein signature 197 221 4.4E-8 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AP3564_04845 98c9acbda8484004cec0b7450b31b9e5 257 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 59 241 3.4E-67 T 13-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AP3564_04845 98c9acbda8484004cec0b7450b31b9e5 257 Hamap MF_01811 Membrane protein insertase YidC [yidC]. 2 246 32.782 T 13-10-2018 IPR023060 Membrane insertase YidC/YidC1/YidC2, Firmicutes GO:0016021|GO:0032977 AP3564_04845 98c9acbda8484004cec0b7450b31b9e5 257 Pfam PF02096 60Kd inner membrane protein 59 241 1.5E-60 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AP3564_12915 ae3cce73672b660a6b3f35d23db179fb 312 Gene3D G3DSA:1.20.58.340 256 312 2.9E-11 T 13-10-2018 AP3564_12915 ae3cce73672b660a6b3f35d23db179fb 312 SUPERFAMILY SSF143865 1 247 3.53E-55 T 13-10-2018 AP3564_12915 ae3cce73672b660a6b3f35d23db179fb 312 Gene3D G3DSA:1.20.58.340 133 254 1.1E-28 T 13-10-2018 AP3564_12915 ae3cce73672b660a6b3f35d23db179fb 312 Gene3D G3DSA:3.30.460.20 1 132 9.2E-26 T 13-10-2018 AP3564_12915 ae3cce73672b660a6b3f35d23db179fb 312 SUPERFAMILY SSF144083 248 309 2.09E-15 T 13-10-2018 AP3564_12915 ae3cce73672b660a6b3f35d23db179fb 312 Pfam PF01544 CorA-like Mg2+ transporter protein 22 307 3.7E-60 T 13-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 AP3564_02040 28696cce8f5807acdcdf811a5ea3e3d2 136 ProDom PD068105 YNZE MEMBRANE TRANSMEMBRANE 29 127 2.0E-18 T 13-10-2018 IPR020509 Uncharacterised protein family YnzE AP3564_02040 28696cce8f5807acdcdf811a5ea3e3d2 136 Pfam PF17329 Family of unknown function (DUF5367) 44 125 5.4E-9 T 13-10-2018 IPR020509 Uncharacterised protein family YnzE AP3564_12075 c3f48307c51bbecd5664b1ca2afa9d93 107 Pfam PF00699 Urease beta subunit 3 99 9.3E-44 T 13-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AP3564_12075 c3f48307c51bbecd5664b1ca2afa9d93 107 Gene3D G3DSA:2.10.150.10 1 107 2.7E-48 T 13-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AP3564_12075 c3f48307c51bbecd5664b1ca2afa9d93 107 TIGRFAM TIGR00192 urease_beta: urease, beta subunit 1 101 7.2E-46 T 13-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AP3564_12075 c3f48307c51bbecd5664b1ca2afa9d93 107 Hamap MF_01954 Urease subunit beta [ureB]. 1 101 32.102 T 13-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AP3564_12075 c3f48307c51bbecd5664b1ca2afa9d93 107 SUPERFAMILY SSF51278 1 103 5.1E-47 T 13-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AP3564_14620 c856096e8946c85ce54928f8140e1323 202 Gene3D G3DSA:3.90.550.10 1 191 1.7E-47 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AP3564_14620 c856096e8946c85ce54928f8140e1323 202 Pfam PF12804 MobA-like NTP transferase domain 3 150 1.0E-28 T 13-10-2018 IPR025877 MobA-like NTP transferase AP3564_14620 c856096e8946c85ce54928f8140e1323 202 SUPERFAMILY SSF53448 1 183 2.25E-28 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AP3564_14620 c856096e8946c85ce54928f8140e1323 202 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 1 186 21.879 T 13-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 AP3564_02900 cbc520d0fa76ae3c220e196ab6db98f8 363 Pfam PF01594 AI-2E family transporter 18 349 4.0E-82 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like AP3564_06545 3869a8dcda7febc41cbb8dfa8919390f 277 Gene3D G3DSA:3.40.830.10 2 274 1.2E-72 T 13-10-2018 AP3564_06545 3869a8dcda7febc41cbb8dfa8919390f 277 SUPERFAMILY SSF53213 8 259 1.26E-46 T 13-10-2018 AP3564_06545 3869a8dcda7febc41cbb8dfa8919390f 277 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 6 250 6.1E-31 T 13-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 AP3564_19145 542c766c6f3d0c1cc28a4da3246d5647 149 SUPERFAMILY SSF111126 18 128 6.8E-24 T 13-10-2018 IPR024096 NO signalling/Golgi transport ligand-binding domain superfamily AP3564_19145 542c766c6f3d0c1cc28a4da3246d5647 149 Gene3D G3DSA:3.30.1380.20 2 149 1.5E-55 T 13-10-2018 AP3564_19145 542c766c6f3d0c1cc28a4da3246d5647 149 Pfam PF10702 Protein of unknown function (DUF2507) 21 142 2.9E-47 T 13-10-2018 IPR019642 Protein of unknown function DUF2507 AP3564_13890 0f2bfb521cd7f0f5863118f174a57016 160 Pfam PF13686 DsrE/DsrF/DrsH-like family 5 159 1.6E-66 T 13-10-2018 IPR032836 DsrE2-like family AP3564_13890 0f2bfb521cd7f0f5863118f174a57016 160 SUPERFAMILY SSF75169 6 158 6.92E-24 T 13-10-2018 IPR027396 DsrEFH-like AP3564_13890 0f2bfb521cd7f0f5863118f174a57016 160 Gene3D G3DSA:3.40.1260.10 2 160 2.6E-65 T 13-10-2018 IPR027396 DsrEFH-like AP3564_01705 233f14ea1935e1b111be4a5ee2541d63 179 Gene3D G3DSA:1.10.10.60 9 89 1.7E-11 T 13-10-2018 AP3564_01705 233f14ea1935e1b111be4a5ee2541d63 179 SUPERFAMILY SSF46689 4 78 7.17E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_01705 233f14ea1935e1b111be4a5ee2541d63 179 SUPERFAMILY SSF53098 71 171 1.97E-21 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_01705 233f14ea1935e1b111be4a5ee2541d63 179 Pfam PF01527 Transposase 3 74 1.4E-12 T 13-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AP3564_01705 233f14ea1935e1b111be4a5ee2541d63 179 Pfam PF13683 Integrase core domain 97 163 7.8E-16 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AP3564_00540 819f64788590cb67cd91c65aa2a4e90e 313 SUPERFAMILY SSF75005 14 309 5.34E-55 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily AP3564_00540 819f64788590cb67cd91c65aa2a4e90e 313 Pfam PF08950 Protein of unknown function (DUF1861) 19 309 1.6E-128 T 13-10-2018 IPR015045 Protein of unknown function DUF1861 AP3564_00540 819f64788590cb67cd91c65aa2a4e90e 313 Gene3D G3DSA:2.115.10.20 12 313 3.0E-122 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily AP3564_18680 296cee24f182b12cd34b0ca944519c2f 381 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 193 212 - T 13-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site AP3564_18680 296cee24f182b12cd34b0ca944519c2f 381 Gene3D G3DSA:3.40.640.10 61 235 5.4E-142 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AP3564_18680 296cee24f182b12cd34b0ca944519c2f 381 SUPERFAMILY SSF53383 3 377 5.32E-103 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AP3564_18680 296cee24f182b12cd34b0ca944519c2f 381 Gene3D G3DSA:3.90.1150.10 4 370 5.4E-142 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AP3564_18680 296cee24f182b12cd34b0ca944519c2f 381 Pfam PF00266 Aminotransferase class-V 4 365 1.3E-81 T 13-10-2018 IPR000192 Aminotransferase class V domain AP3564_18680 296cee24f182b12cd34b0ca944519c2f 381 Gene3D G3DSA:1.10.260.50 15 278 5.4E-142 T 13-10-2018 AP3564_18680 296cee24f182b12cd34b0ca944519c2f 381 PIRSF PIRSF005572 1 381 2.5E-124 T 13-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 AP3564_18105 4be71606626c7c6a3cc05770eaff3f52 57 Pfam PF10958 Protein of unknown function (DUF2759) 6 54 7.1E-24 T 13-10-2018 IPR024490 Protein of unknown function DUF2759 AP3564_18105 4be71606626c7c6a3cc05770eaff3f52 57 ProDom PD052097 RELATED ALKALIPHILY YQGW MEMBRANE TRANSMEMBRANE SPANNING 4 54 2.0E-13 T 13-10-2018 IPR024490 Protein of unknown function DUF2759 AP3564_00920 6f2a36cab7bfae0e50ae9b0593f4f54a 60 Gene3D G3DSA:3.40.50.300 4 53 1.7E-9 T 13-10-2018 AP3564_00920 6f2a36cab7bfae0e50ae9b0593f4f54a 60 SUPERFAMILY SSF52540 8 52 1.55E-8 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_14320 8040f4de248b03bb392c5f3435b0e764 303 Gene3D G3DSA:3.40.1350.10 21 115 4.3E-8 T 13-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 AP3564_03785 4477623eae40ed57da952d5f58b3e4e3 152 Pfam PF14183 YwpF-like protein 2 135 1.6E-45 T 13-10-2018 IPR025573 YwpF-like protein AP3564_02005 9c76ccbae0d9f620c54d60805e160ba5 384 Pfam PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus 4 381 3.4E-125 T 13-10-2018 IPR007392 D-galactarate/Altronate dehydratase, C-terminal GO:0016829 AP3564_06635 a6f36fd90379e783f6e9c5d7f03d2d3f 174 Gene3D G3DSA:3.40.50.880 1 170 8.3E-53 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AP3564_06635 a6f36fd90379e783f6e9c5d7f03d2d3f 174 Pfam PF01965 DJ-1/PfpI family 3 167 6.9E-54 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 AP3564_06635 a6f36fd90379e783f6e9c5d7f03d2d3f 174 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 3 169 5.6E-59 T 13-10-2018 IPR006286 Deglycase PfpI AP3564_06635 a6f36fd90379e783f6e9c5d7f03d2d3f 174 SUPERFAMILY SSF52317 1 169 2.29E-45 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AP3564_13270 49f5a4aaa41314f376a97d901ce1e906 1048 SUPERFAMILY SSF82714 184 248 5.23E-5 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AP3564_13270 49f5a4aaa41314f376a97d901ce1e906 1048 SUPERFAMILY SSF82866 818 1042 1.15E-45 T 13-10-2018 AP3564_13270 49f5a4aaa41314f376a97d901ce1e906 1048 PRINTS PR00702 Acriflavin resistance protein family signature 574 591 1.6E-51 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AP3564_13270 49f5a4aaa41314f376a97d901ce1e906 1048 PRINTS PR00702 Acriflavin resistance protein family signature 474 497 1.6E-51 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AP3564_13270 49f5a4aaa41314f376a97d901ce1e906 1048 PRINTS PR00702 Acriflavin resistance protein family signature 499 522 1.6E-51 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AP3564_13270 49f5a4aaa41314f376a97d901ce1e906 1048 PRINTS PR00702 Acriflavin resistance protein family signature 363 386 1.6E-51 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AP3564_13270 49f5a4aaa41314f376a97d901ce1e906 1048 PRINTS PR00702 Acriflavin resistance protein family signature 39 57 1.6E-51 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AP3564_13270 49f5a4aaa41314f376a97d901ce1e906 1048 PRINTS PR00702 Acriflavin resistance protein family signature 390 411 1.6E-51 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AP3564_13270 49f5a4aaa41314f376a97d901ce1e906 1048 PRINTS PR00702 Acriflavin resistance protein family signature 11 35 1.6E-51 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AP3564_13270 49f5a4aaa41314f376a97d901ce1e906 1048 PRINTS PR00702 Acriflavin resistance protein family signature 418 442 1.6E-51 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AP3564_13270 49f5a4aaa41314f376a97d901ce1e906 1048 SUPERFAMILY SSF82693 134 345 1.43E-16 T 13-10-2018 AP3564_13270 49f5a4aaa41314f376a97d901ce1e906 1048 SUPERFAMILY SSF82693 41 132 1.43E-20 T 13-10-2018 AP3564_13270 49f5a4aaa41314f376a97d901ce1e906 1048 SUPERFAMILY SSF82714 734 817 2.22E-9 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AP3564_13270 49f5a4aaa41314f376a97d901ce1e906 1048 SUPERFAMILY SSF82866 324 526 4.32E-45 T 13-10-2018 AP3564_13270 49f5a4aaa41314f376a97d901ce1e906 1048 Pfam PF00873 AcrB/AcrD/AcrF family 285 1037 8.3E-175 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AP3564_13270 49f5a4aaa41314f376a97d901ce1e906 1048 Pfam PF00873 AcrB/AcrD/AcrF family 4 253 1.0E-41 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AP3564_16575 45e6b0534a1f49213321de1d04f1370a 158 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 130 146 1.1E-18 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AP3564_16575 45e6b0534a1f49213321de1d04f1370a 158 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 94 109 1.1E-18 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AP3564_16575 45e6b0534a1f49213321de1d04f1370a 158 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 50 58 1.1E-18 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AP3564_16575 45e6b0534a1f49213321de1d04f1370a 158 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 3 155 17.53 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AP3564_16575 45e6b0534a1f49213321de1d04f1370a 158 ProSitePatterns PS00855 Signal peptidases II signature. 97 109 - T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AP3564_16575 45e6b0534a1f49213321de1d04f1370a 158 Pfam PF01252 Signal peptidase (SPase) II 11 150 1.2E-38 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AP3564_16575 45e6b0534a1f49213321de1d04f1370a 158 TIGRFAM TIGR00077 lspA: signal peptidase II 7 157 1.2E-47 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AP3564_08325 c75faa2d7928a3fbb2c4278dfec91f30 316 Gene3D G3DSA:3.90.850.10 98 314 7.3E-88 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AP3564_08325 c75faa2d7928a3fbb2c4278dfec91f30 316 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 103 307 6.5E-73 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 AP3564_08325 c75faa2d7928a3fbb2c4278dfec91f30 316 SUPERFAMILY SSF56529 91 307 2.75E-84 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AP3564_00490 c3c5f451f56b9da3554b37e6ded53fd1 326 SUPERFAMILY SSF54060 166 306 1.18E-38 T 13-10-2018 AP3564_00490 c3c5f451f56b9da3554b37e6ded53fd1 326 Pfam PF04231 Endonuclease I 166 304 3.9E-35 T 13-10-2018 IPR007346 Endonuclease I GO:0004518 AP3564_01105 694d6044942262e00830e194e6643181 378 Gene3D G3DSA:3.40.50.720 3 353 1.6E-142 T 13-10-2018 AP3564_01105 694d6044942262e00830e194e6643181 378 ProSitePatterns PS00836 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1. 4 30 - T 13-10-2018 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 GO:0016491|GO:0055114 Reactome: R-HSA-71403 AP3564_01105 694d6044942262e00830e194e6643181 378 SMART SM01002 148 297 1.6E-89 T 13-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain AP3564_01105 694d6044942262e00830e194e6643181 378 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 172 197 - T 13-10-2018 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 AP3564_01105 694d6044942262e00830e194e6643181 378 Gene3D G3DSA:3.40.50.720 129 305 1.6E-142 T 13-10-2018 AP3564_01105 694d6044942262e00830e194e6643181 378 TIGRFAM TIGR00518 alaDH: alanine dehydrogenase 1 370 1.0E-174 T 13-10-2018 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 AP3564_01105 694d6044942262e00830e194e6643181 378 SMART SM01003 4 136 9.5E-77 T 13-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal AP3564_01105 694d6044942262e00830e194e6643181 378 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 136 1.8E-48 T 13-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal AP3564_01105 694d6044942262e00830e194e6643181 378 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 140 352 1.7E-84 T 13-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain AP3564_01105 694d6044942262e00830e194e6643181 378 SUPERFAMILY SSF52283 1 360 1.28E-65 T 13-10-2018 AP3564_01105 694d6044942262e00830e194e6643181 378 PIRSF PIRSF000183 1 371 2.7E-187 T 13-10-2018 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 AP3564_01105 694d6044942262e00830e194e6643181 378 SUPERFAMILY SSF51735 136 303 9.17E-48 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_11245 feead21278f50493b0e4d4d89fb5a908 325 Gene3D G3DSA:3.60.15.10 6 264 1.3E-71 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AP3564_11245 feead21278f50493b0e4d4d89fb5a908 325 Pfam PF00753 Metallo-beta-lactamase superfamily 27 237 5.8E-29 T 13-10-2018 IPR001279 Metallo-beta-lactamase AP3564_11245 feead21278f50493b0e4d4d89fb5a908 325 SUPERFAMILY SSF56281 4 321 6.55E-69 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AP3564_11245 feead21278f50493b0e4d4d89fb5a908 325 SMART SM00849 26 237 1.2E-22 T 13-10-2018 IPR001279 Metallo-beta-lactamase AP3564_11245 feead21278f50493b0e4d4d89fb5a908 325 Gene3D G3DSA:1.10.10.10 267 316 7.0E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_19110 1dbcc774f18fa35998908b5ae35617fa 360 SMART SM00909 98 188 8.1E-27 T 13-10-2018 IPR019606 GerMN domain AP3564_19110 1dbcc774f18fa35998908b5ae35617fa 360 SMART SM00909 249 340 4.9E-17 T 13-10-2018 IPR019606 GerMN domain AP3564_19110 1dbcc774f18fa35998908b5ae35617fa 360 Pfam PF10646 Sporulation and spore germination 75 184 3.0E-24 T 13-10-2018 IPR019606 GerMN domain AP3564_19110 1dbcc774f18fa35998908b5ae35617fa 360 Pfam PF10646 Sporulation and spore germination 221 335 4.2E-15 T 13-10-2018 IPR019606 GerMN domain AP3564_01060 4aef1047e4303a0665c4c5a34bd6f981 221 SUPERFAMILY SSF52540 2 205 7.85E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_01060 4aef1047e4303a0665c4c5a34bd6f981 221 Gene3D G3DSA:3.40.50.300 1 218 2.6E-49 T 13-10-2018 AP3564_01060 4aef1047e4303a0665c4c5a34bd6f981 221 Pfam PF00005 ABC transporter 16 151 2.3E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_01060 4aef1047e4303a0665c4c5a34bd6f981 221 SMART SM00382 25 200 9.8E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_17055 edd0c3b3e27f8c676ab8faa893a35772 259 TIGRFAM TIGR02878 spore_ypjB: sporulation protein YpjB 28 257 3.2E-78 T 13-10-2018 IPR014231 Sporulation protein YpjB AP3564_17055 edd0c3b3e27f8c676ab8faa893a35772 259 Pfam PF09577 Sporulation protein YpjB (SpoYpjB) 29 256 1.5E-80 T 13-10-2018 IPR014231 Sporulation protein YpjB AP3564_14505 562ddee7de00b2a12251c58035ddf10a 248 Pfam PF12730 ABC-2 family transporter protein 5 173 5.8E-9 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 AP3564_14505 562ddee7de00b2a12251c58035ddf10a 248 TIGRFAM TIGR03732 lanti_perm_MutE: lantibiotic protection ABC transporter permease subunit, MutE/EpiE family 3 247 1.6E-87 T 13-10-2018 IPR021205 Lantibiotic ABC transporter permease subunit, SpaE/MutE AP3564_09865 1b2d40ca56c341c296e4660cba26732d 73 Pfam PF10676 Spore germination protein gerPA/gerPF 1 72 2.1E-30 T 13-10-2018 IPR019618 Spore germination protein GerPA/GerPF AP3564_17945 3f675e85882a9b7a447459ee5104bf6f 292 Gene3D G3DSA:3.40.1090.10 105 290 1.7E-20 T 13-10-2018 AP3564_17945 3f675e85882a9b7a447459ee5104bf6f 292 SUPERFAMILY SSF52151 6 288 3.14E-46 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase AP3564_17945 3f675e85882a9b7a447459ee5104bf6f 292 Pfam PF01734 Patatin-like phospholipase 6 195 1.2E-33 T 13-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 AP3564_17945 3f675e85882a9b7a447459ee5104bf6f 292 Gene3D G3DSA:3.40.1090.20 2 103 3.4E-24 T 13-10-2018 AP3564_10580 6662d11540782f3ab431cbd436eb38ec 161 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 75 87 - T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 AP3564_10580 6662d11540782f3ab431cbd436eb38ec 161 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 12 136 2.2E-52 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 AP3564_10580 6662d11540782f3ab431cbd436eb38ec 161 Gene3D G3DSA:2.70.70.10 3 160 2.4E-59 T 13-10-2018 IPR011055 Duplicated hybrid motif AP3564_10580 6662d11540782f3ab431cbd436eb38ec 161 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 13 133 8.7E-47 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 AP3564_10580 6662d11540782f3ab431cbd436eb38ec 161 SUPERFAMILY SSF51261 4 157 2.27E-57 T 13-10-2018 IPR011055 Duplicated hybrid motif AP3564_12490 3cebeafbfb5d0c16f160f14626e12694 389 Pfam PF01098 Cell cycle protein 15 381 1.8E-95 T 13-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AP3564_12490 3cebeafbfb5d0c16f160f14626e12694 389 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 339 363 - T 13-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AP3564_02575 8e965ee86244c094c4f8a5035e84cc7c 130 Gene3D G3DSA:3.40.50.510 1 126 2.0E-40 T 13-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 AP3564_02575 8e965ee86244c094c4f8a5035e84cc7c 130 TIGRFAM TIGR02364 dha_pts: dihydroxyacetone kinase, phosphotransfer subunit 4 120 3.0E-37 T 13-10-2018 IPR012844 Dihydroxyacetone kinase phosphotransferase subunit, N-terminal domain AP3564_02575 8e965ee86244c094c4f8a5035e84cc7c 130 Pfam PF03610 PTS system fructose IIA component 6 115 4.4E-26 T 13-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 AP3564_02575 8e965ee86244c094c4f8a5035e84cc7c 130 SUPERFAMILY SSF53062 4 124 1.31E-30 T 13-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 AP3564_02555 3e524b702bee6904493e8be435976f12 186 Pfam PF04309 Glycerol-3-phosphate responsive antiterminator 8 180 1.7E-63 T 13-10-2018 IPR006699 Glycerol uptake operon antiterminator GO:0006071|GO:0006355 AP3564_02555 3e524b702bee6904493e8be435976f12 186 SUPERFAMILY SSF110391 8 181 2.09E-61 T 13-10-2018 IPR035928 GlpP-like superfamily AP3564_02555 3e524b702bee6904493e8be435976f12 186 Gene3D G3DSA:3.20.20.400 1 186 9.5E-70 T 13-10-2018 IPR035928 GlpP-like superfamily AP3564_02555 3e524b702bee6904493e8be435976f12 186 PIRSF PIRSF016897 1 186 5.1E-65 T 13-10-2018 IPR006699 Glycerol uptake operon antiterminator GO:0006071|GO:0006355 AP3564_11075 3a8df47ce66340588f144a26228c4253 406 Pfam PF07690 Major Facilitator Superfamily 14 244 5.3E-30 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AP3564_11075 3a8df47ce66340588f144a26228c4253 406 Gene3D G3DSA:1.20.1250.20 5 385 2.6E-51 T 13-10-2018 AP3564_11075 3a8df47ce66340588f144a26228c4253 406 SUPERFAMILY SSF103473 1 397 1.44E-59 T 13-10-2018 IPR036259 MFS transporter superfamily AP3564_01780 8d594f611e3bb3fe59663b2cc5a8cc3e 440 Gene3D G3DSA:1.10.510.10 23 196 4.9E-61 T 13-10-2018 AP3564_01780 8d594f611e3bb3fe59663b2cc5a8cc3e 440 Pfam PF10140 WXG100 protein secretion system (Wss), protein YukC 26 381 1.6E-124 T 13-10-2018 IPR018778 Type VII secretion system EssB AP3564_01780 8d594f611e3bb3fe59663b2cc5a8cc3e 440 TIGRFAM TIGR03926 T7_EssB: type VII secretion protein EssB 7 381 1.2E-135 T 13-10-2018 IPR018778 Type VII secretion system EssB AP3564_01780 8d594f611e3bb3fe59663b2cc5a8cc3e 440 Gene3D G3DSA:1.25.40.680 241 397 2.8E-55 T 13-10-2018 AP3564_02085 984efbdc9db57f40f39fb80014287d48 153 Pfam PF14184 Regulatory protein YrvL 3 121 2.0E-19 T 13-10-2018 IPR025912 Regulatory protein YrvL AP3564_10430 822b1b05672ce38c99f23458a8f41894 101 TIGRFAM TIGR04104 cxxc_20_cxxc: cxxc_20_cxxc protein 4 95 1.6E-24 T 13-10-2018 IPR026369 CxxC-20-CxxC protein AP3564_19590 a4fb5435c0cd63315795ba92641f1ea1 409 Pfam PF01548 Transposase 5 164 2.2E-30 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_19590 a4fb5435c0cd63315795ba92641f1ea1 409 Pfam PF02371 Transposase IS116/IS110/IS902 family 280 365 4.2E-23 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_11955 86d2c7863ef8a9162525ed7535ffa7df 334 Gene3D G3DSA:1.10.3470.10 7 333 1.7E-88 T 13-10-2018 IPR037294 ABC transporter, BtuC-like AP3564_11955 86d2c7863ef8a9162525ed7535ffa7df 334 Pfam PF01032 FecCD transport family 19 328 1.8E-87 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 AP3564_11955 86d2c7863ef8a9162525ed7535ffa7df 334 SUPERFAMILY SSF81345 9 328 5.1E-80 T 13-10-2018 IPR037294 ABC transporter, BtuC-like AP3564_04415 0fb0038022ba05246af5f6f4831f2fec 266 Gene3D G3DSA:1.10.3720.10 69 265 9.4E-35 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_04415 0fb0038022ba05246af5f6f4831f2fec 266 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 94 265 2.0E-16 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AP3564_04415 0fb0038022ba05246af5f6f4831f2fec 266 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 12 265 3.6E-87 T 13-10-2018 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 AP3564_04415 0fb0038022ba05246af5f6f4831f2fec 266 SUPERFAMILY SSF161098 70 256 3.4E-36 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_12565 77c20fda565b110d3112030ca9091e37 69 ProDom PD055417 UPF0356 TRANSCRIPTIONAL REGULATOR SP0122 SH1862 BLI01669/BL01628 MW0973 LMOF2365_1049 BCE33L3734 SPYM3_1619/SPS0248 1 68 2.0E-21 T 13-10-2018 IPR009907 Protein of unknown function DUF1447 AP3564_12565 77c20fda565b110d3112030ca9091e37 69 Gene3D G3DSA:3.10.20.730 1 58 3.2E-23 T 13-10-2018 AP3564_12565 77c20fda565b110d3112030ca9091e37 69 Pfam PF07288 Protein of unknown function (DUF1447) 2 68 3.7E-25 T 13-10-2018 IPR009907 Protein of unknown function DUF1447 AP3564_03745 d5a05f121e34b41c702e378e43977fdd 254 SUPERFAMILY SSF89550 1 201 6.28E-15 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 AP3564_03745 d5a05f121e34b41c702e378e43977fdd 254 PIRSF PIRSF016557 1 254 1.0E-105 T 13-10-2018 IPR016667 Capsular polysaccharide synthesis, CpsB/CapC GO:0004725|GO:0030145 AP3564_03745 d5a05f121e34b41c702e378e43977fdd 254 Gene3D G3DSA:3.20.20.140 1 254 1.4E-97 T 13-10-2018 AP3564_16225 ff4d579c9241707798482096a4f99a82 129 PIRSF PIRSF002889 1 127 3.5E-33 T 13-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 AP3564_16225 ff4d579c9241707798482096a4f99a82 129 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 4 125 2.3E-34 T 13-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 AP3564_16225 ff4d579c9241707798482096a4f99a82 129 Pfam PF00460 Flagella basal body rod protein 23 38 2.6E-7 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AP3564_14095 dee3ac95f07904bc9cdd183358ecdaf5 352 SUPERFAMILY SSF53720 1 337 1.32E-63 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AP3564_14095 dee3ac95f07904bc9cdd183358ecdaf5 352 Pfam PF00171 Aldehyde dehydrogenase family 2 160 3.8E-19 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AP3564_14095 dee3ac95f07904bc9cdd183358ecdaf5 352 Gene3D G3DSA:3.40.309.10 108 287 3.6E-90 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AP3564_14095 dee3ac95f07904bc9cdd183358ecdaf5 352 Gene3D G3DSA:3.40.605.10 1 107 3.6E-90 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AP3564_13490 1dd31fd22c8c67f86cf87586799dfdca 470 Pfam PF04055 Radical SAM superfamily 100 261 1.4E-21 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AP3564_13490 1dd31fd22c8c67f86cf87586799dfdca 470 Gene3D G3DSA:3.20.20.70 98 342 4.7E-35 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_13490 1dd31fd22c8c67f86cf87586799dfdca 470 Pfam PF13394 4Fe-4S single cluster domain 103 184 1.2E-9 T 13-10-2018 AP3564_13490 1dd31fd22c8c67f86cf87586799dfdca 470 SUPERFAMILY SSF102114 85 310 2.16E-39 T 13-10-2018 AP3564_04850 fb6f739e1aeae6208d14a8a5d1acd359 116 SUPERFAMILY SSF54211 1 113 2.02E-33 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AP3564_04850 fb6f739e1aeae6208d14a8a5d1acd359 116 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 7 105 5.0E-35 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AP3564_04850 fb6f739e1aeae6208d14a8a5d1acd359 116 Pfam PF00825 Ribonuclease P 1 108 2.2E-34 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AP3564_04850 fb6f739e1aeae6208d14a8a5d1acd359 116 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 1 111 2.0E-33 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AP3564_04850 fb6f739e1aeae6208d14a8a5d1acd359 116 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 51 65 - T 13-10-2018 IPR020539 Ribonuclease P, conserved site GO:0004526 AP3564_04850 fb6f739e1aeae6208d14a8a5d1acd359 116 Gene3D G3DSA:3.30.230.10 1 116 2.1E-39 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AP3564_04850 fb6f739e1aeae6208d14a8a5d1acd359 116 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 1 111 20.136 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AP3564_18260 53f71f4f0d855c75cbd54f74716620b0 252 Gene3D G3DSA:3.40.50.300 1 242 1.6E-68 T 13-10-2018 AP3564_18260 53f71f4f0d855c75cbd54f74716620b0 252 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_18260 53f71f4f0d855c75cbd54f74716620b0 252 SUPERFAMILY SSF52540 3 228 7.07E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_18260 53f71f4f0d855c75cbd54f74716620b0 252 SMART SM00382 30 219 8.1E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_18260 53f71f4f0d855c75cbd54f74716620b0 252 Pfam PF00005 ABC transporter 21 169 6.2E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_03020 127adb2e8cbdcfd6955e360e35a2e42f 541 Pfam PF03323 Bacillus/Clostridium GerA spore germination protein 48 517 2.6E-192 T 13-10-2018 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 AP3564_03020 127adb2e8cbdcfd6955e360e35a2e42f 541 PIRSF PIRSF005690 33 531 3.1E-182 T 13-10-2018 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 AP3564_08150 b3d19c01849a91c9e3582c7f416aa2d5 759 Pfam PF02538 Hydantoinase B/oxoprolinase 51 625 2.5E-121 T 13-10-2018 IPR003692 Hydantoinase B/oxoprolinase GO:0003824 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 AP3564_13120 f9269e01d9a9f9ee753c50b50adfe6eb 223 SUPERFAMILY SSF52540 2 192 5.54E-36 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_13120 f9269e01d9a9f9ee753c50b50adfe6eb 223 Gene3D G3DSA:3.40.50.300 1 222 7.2E-38 T 13-10-2018 AP3564_13120 f9269e01d9a9f9ee753c50b50adfe6eb 223 SMART SM00382 27 209 3.2E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_13120 f9269e01d9a9f9ee753c50b50adfe6eb 223 Pfam PF00005 ABC transporter 19 158 1.4E-22 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_09805 37fd84db49f65d38afbf15d6149e4e87 205 Pfam PF09335 SNARE associated Golgi protein 44 161 5.0E-23 T 13-10-2018 IPR032816 SNARE associated Golgi protein AP3564_18285 53e5ae8b1aad798bd8bb3aa24da5f628 164 Pfam PF14181 YqfQ-like protein 54 145 8.4E-34 T 13-10-2018 IPR025571 YqfQ-like protein AP3564_17965 a7c8fa880957c5c4300427a5382a8b4b 175 Pfam PF07883 Cupin domain 74 149 7.7E-11 T 13-10-2018 IPR013096 Cupin 2, conserved barrel AP3564_17965 a7c8fa880957c5c4300427a5382a8b4b 175 Gene3D G3DSA:2.60.120.10 49 175 8.9E-41 T 13-10-2018 IPR014710 RmlC-like jelly roll fold AP3564_17965 a7c8fa880957c5c4300427a5382a8b4b 175 SUPERFAMILY SSF51182 13 164 6.28E-22 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily AP3564_19235 e72b5d58467f30335e60fe42daae9421 74 TIGRFAM TIGR03092 SASP_sspI: small, acid-soluble spore protein I 4 68 2.2E-30 T 13-10-2018 IPR017525 Small, acid-soluble spore protein I GO:0030436 AP3564_19235 e72b5d58467f30335e60fe42daae9421 74 Pfam PF14098 Small, acid-soluble spore protein I 3 67 2.6E-29 T 13-10-2018 IPR017525 Small, acid-soluble spore protein I GO:0030436 AP3564_19235 e72b5d58467f30335e60fe42daae9421 74 Hamap MF_00669 Small, acid-soluble spore protein I [sspI]. 1 68 21.076 T 13-10-2018 IPR017525 Small, acid-soluble spore protein I GO:0030436 AP3564_00510 fbea353680d0938f86fea607359eec7a 94 SUPERFAMILY SSF52794 1 93 1.57E-20 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 AP3564_00510 fbea353680d0938f86fea607359eec7a 94 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 5 86 6.3E-15 T 13-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AP3564_00510 fbea353680d0938f86fea607359eec7a 94 Gene3D G3DSA:3.40.50.2300 3 94 2.2E-29 T 13-10-2018 AP3564_06470 b2ddba6c096b96cb5c855e7549f9dc8c 170 Pfam PF12973 ChrR Cupin-like domain 38 126 1.6E-11 T 13-10-2018 IPR025979 ChrR-like cupin domain AP3564_06470 b2ddba6c096b96cb5c855e7549f9dc8c 170 Gene3D G3DSA:2.60.120.10 27 167 2.6E-46 T 13-10-2018 IPR014710 RmlC-like jelly roll fold AP3564_06470 b2ddba6c096b96cb5c855e7549f9dc8c 170 SUPERFAMILY SSF51182 34 153 3.0E-23 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily AP3564_13140 063e6ad50243199580f25a0c08525963 565 Pfam PF09818 Predicted ATPase of the ABC class 3 445 2.9E-186 T 13-10-2018 IPR019195 ABC transporter, ATPase, putative AP3564_13140 063e6ad50243199580f25a0c08525963 565 SUPERFAMILY SSF52540 238 413 1.72E-6 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_11125 23e6f9b832335ef60d3e6590f7fb86e6 202 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AP3564_11125 23e6f9b832335ef60d3e6590f7fb86e6 202 Pfam PF00005 ABC transporter 18 158 1.2E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_11125 23e6f9b832335ef60d3e6590f7fb86e6 202 SMART SM00382 26 201 2.4E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_11125 23e6f9b832335ef60d3e6590f7fb86e6 202 Gene3D G3DSA:3.40.50.300 1 202 4.1E-57 T 13-10-2018 AP3564_11125 23e6f9b832335ef60d3e6590f7fb86e6 202 SUPERFAMILY SSF52540 2 202 1.11E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_06800 fa0733a23516514fd770a76f48e16766 93 Gene3D G3DSA:1.10.1220.10 1 93 3.6E-43 T 13-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AP3564_06800 fa0733a23516514fd770a76f48e16766 93 SUPERFAMILY SSF47598 7 49 4.89E-5 T 13-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 AP3564_16580 2309f8dd8dcaf1ece45a753213ec2727 96 Gene3D G3DSA:1.20.120.910 30 87 1.7E-8 T 13-10-2018 AP3564_18890 49b9a7fe42bf7d9a33664e21756a0660 288 Pfam PF02163 Peptidase family M50 33 105 1.6E-7 T 13-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 AP3564_18890 49b9a7fe42bf7d9a33664e21756a0660 288 Pfam PF02163 Peptidase family M50 112 168 1.7E-9 T 13-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 AP3564_14340 b0aa677d8b78975d6fb9131d2bfbf87d 71 SUPERFAMILY SSF52540 2 58 4.91E-11 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_14340 b0aa677d8b78975d6fb9131d2bfbf87d 71 Gene3D G3DSA:3.40.50.300 1 68 2.2E-9 T 13-10-2018 AP3564_13200 c9d14b60d45a560d85f262135ef6f441 259 Pfam PF01987 Mitochondrial biogenesis AIM24 8 225 2.4E-68 T 13-10-2018 IPR002838 Mitochondrial biogenesis protein AIM24 AP3564_13200 c9d14b60d45a560d85f262135ef6f441 259 SUPERFAMILY SSF51219 6 238 9.16E-84 T 13-10-2018 IPR016031 Tryptophan RNA-binding attenuator protein-like domain superfamily AP3564_13200 c9d14b60d45a560d85f262135ef6f441 259 TIGRFAM TIGR00266 TIGR00266: TIGR00266 family protein 7 226 1.5E-33 T 13-10-2018 IPR002838 Mitochondrial biogenesis protein AIM24 AP3564_13200 c9d14b60d45a560d85f262135ef6f441 259 Gene3D G3DSA:3.60.160.10 1 248 1.5E-103 T 13-10-2018 IPR036983 Mitochondrial biogenesis AIM24 superfamily AP3564_11665 7d7a5d673e4c4c723deac342997e93dd 82 Pfam PF09388 Spo0E like sporulation regulatory protein 14 53 6.0E-14 T 13-10-2018 IPR018540 Aspartyl-phosphate phosphatase Spo0E-like GO:0043937 AP3564_11665 7d7a5d673e4c4c723deac342997e93dd 82 SUPERFAMILY SSF140500 9 61 1.83E-14 T 13-10-2018 IPR037208 Aspartyl-phosphate phosphatase Spo0E-like superfamily GO:0043937 AP3564_11665 7d7a5d673e4c4c723deac342997e93dd 82 Gene3D G3DSA:1.20.58.990 8 68 1.4E-11 T 13-10-2018 IPR037208 Aspartyl-phosphate phosphatase Spo0E-like superfamily GO:0043937 AP3564_06750 5f7c5b8d1cd116ae149282d71d9fba5f 106 Gene3D G3DSA:3.40.30.10 1 105 7.9E-26 T 13-10-2018 AP3564_06750 5f7c5b8d1cd116ae149282d71d9fba5f 106 Pfam PF00085 Thioredoxin 6 101 6.3E-20 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 AP3564_06750 5f7c5b8d1cd116ae149282d71d9fba5f 106 SUPERFAMILY SSF52833 4 105 8.5E-28 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AP3564_02150 e66289792d97b68b003ae1319dd210f0 451 ProSitePatterns PS00217 Sugar transport proteins signature 2. 118 143 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AP3564_02150 e66289792d97b68b003ae1319dd210f0 451 Gene3D G3DSA:1.20.1250.20 18 429 1.2E-78 T 13-10-2018 AP3564_02150 e66289792d97b68b003ae1319dd210f0 451 SUPERFAMILY SSF103473 10 427 1.96E-85 T 13-10-2018 IPR036259 MFS transporter superfamily AP3564_02150 e66289792d97b68b003ae1319dd210f0 451 Pfam PF07690 Major Facilitator Superfamily 26 392 1.2E-50 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AP3564_16885 6aaec17469a184f47702d966c45d62cf 507 Pfam PF02074 Carboxypeptidase Taq (M32) metallopeptidase 6 500 3.3E-223 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AP3564_16885 6aaec17469a184f47702d966c45d62cf 507 Gene3D G3DSA:1.10.1370.30 4 506 4.1E-210 T 13-10-2018 AP3564_16885 6aaec17469a184f47702d966c45d62cf 507 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 338 357 1.8E-80 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AP3564_16885 6aaec17469a184f47702d966c45d62cf 507 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 233 249 1.8E-80 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AP3564_16885 6aaec17469a184f47702d966c45d62cf 507 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 297 313 1.8E-80 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AP3564_16885 6aaec17469a184f47702d966c45d62cf 507 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 153 173 1.8E-80 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AP3564_16885 6aaec17469a184f47702d966c45d62cf 507 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 384 401 1.8E-80 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AP3564_16885 6aaec17469a184f47702d966c45d62cf 507 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 250 269 1.8E-80 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AP3564_16885 6aaec17469a184f47702d966c45d62cf 507 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 407 428 1.8E-80 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AP3564_16885 6aaec17469a184f47702d966c45d62cf 507 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 452 470 1.8E-80 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AP3564_16885 6aaec17469a184f47702d966c45d62cf 507 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 270 289 1.8E-80 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AP3564_16885 6aaec17469a184f47702d966c45d62cf 507 SUPERFAMILY SSF55486 11 500 1.71E-113 T 13-10-2018 AP3564_16885 6aaec17469a184f47702d966c45d62cf 507 PIRSF PIRSF006615 6 506 2.9E-198 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AP3564_06475 e204cbda32c496d27b3eb6ed3d54f090 142 SUPERFAMILY SSF55961 6 142 2.31E-39 T 13-10-2018 AP3564_06475 e204cbda32c496d27b3eb6ed3d54f090 142 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 22 142 4.8E-13 T 13-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like AP3564_06475 e204cbda32c496d27b3eb6ed3d54f090 142 Gene3D G3DSA:3.30.530.20 1 142 1.5E-40 T 13-10-2018 IPR023393 START-like domain superfamily AP3564_07595 ea4be74f09d6a1b420340f32c180b331 352 Gene3D G3DSA:2.30.30.40 247 287 6.1E-6 T 13-10-2018 AP3564_11760 92c699608ef259752c034fa005ff953f 491 PIRSF PIRSF005690 1 483 5.8E-148 T 13-10-2018 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 AP3564_11760 92c699608ef259752c034fa005ff953f 491 Pfam PF03323 Bacillus/Clostridium GerA spore germination protein 15 468 8.7E-159 T 13-10-2018 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 AP3564_12365 728eef45fd63b52bd955b09b6c6ea637 61 Gene3D G3DSA:1.10.10.2840 2 52 6.3E-10 T 13-10-2018 AP3564_12365 728eef45fd63b52bd955b09b6c6ea637 61 Pfam PF13556 PucR C-terminal helix-turn-helix domain 4 47 3.3E-14 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain AP3564_16315 4ca03bb9a790bf7d45c05f9beb3511b4 126 Pfam PF11068 YlqD protein 1 126 6.4E-37 T 13-10-2018 IPR021297 YlqD protein AP3564_14545 95c87fe47d30e43c1b4f75b4670d8000 91 Pfam PF01909 Nucleotidyltransferase domain 4 86 1.3E-16 T 13-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 AP3564_14545 95c87fe47d30e43c1b4f75b4670d8000 91 SUPERFAMILY SSF81301 4 86 2.57E-21 T 13-10-2018 AP3564_14545 95c87fe47d30e43c1b4f75b4670d8000 91 Gene3D G3DSA:3.30.460.10 2 86 1.0E-24 T 13-10-2018 AP3564_01895 2c41f926ba28d42d331b6385a093f80c 263 SUPERFAMILY SSF53697 87 250 4.45E-25 T 13-10-2018 AP3564_01895 2c41f926ba28d42d331b6385a093f80c 263 Pfam PF01418 Helix-turn-helix domain, rpiR family 3 73 8.1E-24 T 13-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 AP3564_01895 2c41f926ba28d42d331b6385a093f80c 263 Pfam PF01380 SIS domain 110 219 4.9E-15 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AP3564_01895 2c41f926ba28d42d331b6385a093f80c 263 Gene3D G3DSA:3.40.50.10490 85 259 1.1E-28 T 13-10-2018 AP3564_01895 2c41f926ba28d42d331b6385a093f80c 263 SUPERFAMILY SSF46689 3 73 2.69E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_01895 2c41f926ba28d42d331b6385a093f80c 263 Gene3D G3DSA:1.10.10.10 2 73 1.1E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_19480 ab70d942cdbdd686ceda33ce93d29329 166 Pfam PF08534 Redoxin 19 159 7.1E-25 T 13-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 AP3564_19480 ab70d942cdbdd686ceda33ce93d29329 166 ProSitePatterns PS01265 Tpx family signature. 83 94 - T 13-10-2018 IPR018219 Thiol peroxidase conserved site GO:0016684|GO:0055114 KEGG: 00480+1.11.1.15 AP3564_19480 ab70d942cdbdd686ceda33ce93d29329 166 Gene3D G3DSA:3.40.30.10 1 165 2.1E-52 T 13-10-2018 AP3564_19480 ab70d942cdbdd686ceda33ce93d29329 166 SUPERFAMILY SSF52833 1 160 3.18E-47 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AP3564_19480 ab70d942cdbdd686ceda33ce93d29329 166 Hamap MF_00269 Thiol peroxidase [tpx]. 3 163 39.583 T 13-10-2018 IPR002065 Thiol peroxidase Tpx GO:0008379|GO:0016209|GO:0055114 KEGG: 00480+1.11.1.15 AP3564_01820 04b6a37eaf4f574f3d29fcc66ad5810e 203 Pfam PF14021 Tuberculosis necrotizing toxin 136 199 1.5E-23 T 13-10-2018 IPR025331 Tuberculosis necrotizing toxin KEGG: 00760+3.2.2.5 AP3564_03195 a1a1f4f6d03e1ec776c19cc3d1229672 320 Pfam PF04392 ABC transporter substrate binding protein 30 319 2.6E-86 T 13-10-2018 IPR007487 ABC transporter, substrate-binding protein AP3564_03195 a1a1f4f6d03e1ec776c19cc3d1229672 320 Gene3D G3DSA:3.40.50.2300 41 291 3.8E-92 T 13-10-2018 AP3564_03195 a1a1f4f6d03e1ec776c19cc3d1229672 320 SUPERFAMILY SSF53822 37 290 1.76E-18 T 13-10-2018 IPR028082 Periplasmic binding protein-like I AP3564_03195 a1a1f4f6d03e1ec776c19cc3d1229672 320 Gene3D G3DSA:3.40.50.2300 140 310 3.8E-92 T 13-10-2018 AP3564_11745 5be1a679d574666c716a6bca2b0edc5e 59 Pfam PF09953 Uncharacterized protein conserved in bacteria (DUF2187) 2 57 9.5E-31 T 13-10-2018 IPR018690 Protein of unknown function DUF2187 AP3564_04895 acffb75dd2d028fdace17a0dea4a4555 366 Pfam PF13487 HD domain 201 263 3.8E-16 T 13-10-2018 AP3564_04895 acffb75dd2d028fdace17a0dea4a4555 366 Gene3D G3DSA:1.10.3210.10 1 313 1.4E-66 T 13-10-2018 AP3564_04895 acffb75dd2d028fdace17a0dea4a4555 366 SMART SM00471 145 281 0.0049 T 13-10-2018 IPR003607 HD/PDEase domain AP3564_04895 acffb75dd2d028fdace17a0dea4a4555 366 SUPERFAMILY SSF109604 146 310 2.01E-27 T 13-10-2018 AP3564_06165 21f4830c49717f2ec9f9795b777c4f7e 156 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 22 150 2.5E-27 T 13-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ AP3564_13905 9c1346608e296bde3794fffe2a7182bb 335 Pfam PF03601 Conserved hypothetical protein 698 15 319 4.0E-74 T 13-10-2018 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 AP3564_03805 67cdfdc41004e1fb913e66fffdb91f16 276 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 196 273 7.8E-16 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain AP3564_03805 67cdfdc41004e1fb913e66fffdb91f16 276 Pfam PF00460 Flagella basal body rod protein 7 35 1.9E-8 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AP3564_03805 67cdfdc41004e1fb913e66fffdb91f16 276 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 143 9.4E-26 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G AP3564_03805 67cdfdc41004e1fb913e66fffdb91f16 276 SUPERFAMILY SSF117143 93 213 2.09E-9 T 13-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like AP3564_04030 7d6464e322bbe2fe5727dd0db12114c2 429 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 415 1.8E-172 T 13-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AP3564_04030 7d6464e322bbe2fe5727dd0db12114c2 429 SUPERFAMILY SSF55205 1 416 6.87E-134 T 13-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 AP3564_04030 7d6464e322bbe2fe5727dd0db12114c2 429 Gene3D G3DSA:3.65.10.10 6 413 1.5E-161 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 AP3564_04030 7d6464e322bbe2fe5727dd0db12114c2 429 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 406 1.1E-92 T 13-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 AP3564_04030 7d6464e322bbe2fe5727dd0db12114c2 429 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 416 42.703 T 13-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AP3564_04030 7d6464e322bbe2fe5727dd0db12114c2 429 Gene3D G3DSA:3.65.10.10 21 228 1.5E-161 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 AP3564_17205 270a03e85365721cfa70dcfd234d3e0b 259 Pfam PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 21 205 1.3E-67 T 13-10-2018 IPR009920 Heptaprenyl diphosphate synthase subunit 1 GO:0009234 KEGG: 00900+2.5.1.30|MetaCyc: PWY-5807 AP3564_06220 b09dc578724c6d510abdc2a97c7b7a97 245 SUPERFAMILY SSF53098 4 205 9.86E-27 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_06220 b09dc578724c6d510abdc2a97c7b7a97 245 Pfam PF01609 Transposase DDE domain 10 138 5.2E-9 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_14065 43c20dff7eeed4b4a8d17670dcad6a1c 151 Gene3D G3DSA:3.30.300.20 2 137 6.0E-37 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta AP3564_14065 43c20dff7eeed4b4a8d17670dcad6a1c 151 Pfam PF02566 OsmC-like protein 42 146 1.5E-17 T 13-10-2018 IPR003718 OsmC/Ohr family AP3564_14065 43c20dff7eeed4b4a8d17670dcad6a1c 151 SUPERFAMILY SSF82784 8 148 1.18E-32 T 13-10-2018 IPR036102 OsmC/Ohr superfamily AP3564_17295 cfe7ada8a02cce0e8f043f9e144a973f 447 Pfam PF14620 YpeB sporulation 13 371 1.1E-140 T 13-10-2018 IPR014239 Spore germination YpeB GO:0009847 AP3564_17295 cfe7ada8a02cce0e8f043f9e144a973f 447 TIGRFAM TIGR02889 spore_YpeB: germination protein YpeB 4 437 4.5E-160 T 13-10-2018 IPR014239 Spore germination YpeB GO:0009847 AP3564_11490 777f78836a8d0d1385ecf9f6be1a0f1a 239 Gene3D G3DSA:3.30.1330.10 1 121 8.2E-6 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AP3564_11490 777f78836a8d0d1385ecf9f6be1a0f1a 239 SUPERFAMILY SSF55326 31 118 1.45E-5 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AP3564_01095 eb00a02bbf4e1c79479812d5fffbb242 509 Hamap MF_00212 Probable malate:quinone oxidoreductase [mqo]. 4 492 55.317 T 13-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 AP3564_01095 eb00a02bbf4e1c79479812d5fffbb242 509 Gene3D G3DSA:3.30.9.10 113 178 9.7E-7 T 13-10-2018 AP3564_01095 eb00a02bbf4e1c79479812d5fffbb242 509 Gene3D G3DSA:3.50.50.60 10 257 9.7E-7 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_01095 eb00a02bbf4e1c79479812d5fffbb242 509 Pfam PF06039 Malate:quinone oxidoreductase (Mqo) 7 492 2.3E-242 T 13-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 AP3564_01095 eb00a02bbf4e1c79479812d5fffbb242 509 TIGRFAM TIGR01320 mal_quin_oxido: malate dehydrogenase (acceptor) 8 490 5.9E-222 T 13-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 AP3564_01095 eb00a02bbf4e1c79479812d5fffbb242 509 SUPERFAMILY SSF51905 6 320 6.99E-24 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_15885 468b6fdbfe6bc961213935728e78874b 429 SUPERFAMILY SSF63411 283 427 2.83E-19 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AP3564_15885 468b6fdbfe6bc961213935728e78874b 429 Gene3D G3DSA:3.30.830.10 7 237 5.4E-61 T 13-10-2018 AP3564_15885 468b6fdbfe6bc961213935728e78874b 429 Pfam PF00675 Insulinase (Peptidase family M16) 65 175 2.1E-16 T 13-10-2018 IPR011765 Peptidase M16, N-terminal AP3564_15885 468b6fdbfe6bc961213935728e78874b 429 Pfam PF05193 Peptidase M16 inactive domain 183 362 1.9E-22 T 13-10-2018 IPR007863 Peptidase M16, C-terminal AP3564_15885 468b6fdbfe6bc961213935728e78874b 429 Gene3D G3DSA:3.30.830.10 239 427 1.4E-40 T 13-10-2018 AP3564_15885 468b6fdbfe6bc961213935728e78874b 429 SUPERFAMILY SSF63411 13 221 4.37E-43 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AP3564_08755 f1547c2c112a5ec08f3a76c8a47067bf 432 Gene3D G3DSA:1.10.10.60 370 429 2.4E-24 T 13-10-2018 AP3564_08755 f1547c2c112a5ec08f3a76c8a47067bf 432 PIRSF PIRSF000774 1 432 8.9E-133 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AP3564_08755 f1547c2c112a5ec08f3a76c8a47067bf 432 PRINTS PR00045 Sigma-54 factor signature 148 165 4.3E-26 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AP3564_08755 f1547c2c112a5ec08f3a76c8a47067bf 432 PRINTS PR00045 Sigma-54 factor signature 349 360 4.3E-26 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AP3564_08755 f1547c2c112a5ec08f3a76c8a47067bf 432 PRINTS PR00045 Sigma-54 factor signature 405 423 4.3E-26 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AP3564_08755 f1547c2c112a5ec08f3a76c8a47067bf 432 PRINTS PR00045 Sigma-54 factor signature 333 345 4.3E-26 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AP3564_08755 f1547c2c112a5ec08f3a76c8a47067bf 432 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 9 429 7.2E-133 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AP3564_08755 f1547c2c112a5ec08f3a76c8a47067bf 432 Gene3D G3DSA:1.10.10.1330 83 198 2.2E-20 T 13-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily AP3564_08755 f1547c2c112a5ec08f3a76c8a47067bf 432 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 321 340 - T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AP3564_08755 f1547c2c112a5ec08f3a76c8a47067bf 432 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 410 417 - T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AP3564_08755 f1547c2c112a5ec08f3a76c8a47067bf 432 Pfam PF04552 Sigma-54, DNA binding domain 274 430 8.7E-61 T 13-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding AP3564_08755 f1547c2c112a5ec08f3a76c8a47067bf 432 Pfam PF04963 Sigma-54 factor, core binding domain 76 262 1.2E-51 T 13-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 AP3564_08755 f1547c2c112a5ec08f3a76c8a47067bf 432 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 5 49 1.9E-12 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AP3564_03090 01f9c78f47f53b520930a15e84232461 64 Pfam PF14147 Sporulation protein YhaL 4 55 2.0E-26 T 13-10-2018 IPR025428 Sporulation protein YhaL AP3564_09985 7015fc21fd73e89e47b613c12006281f 163 Gene3D G3DSA:3.30.70.860 6 163 8.7E-60 T 13-10-2018 IPR035571 UPF0234-like, C-terminal AP3564_09985 7015fc21fd73e89e47b613c12006281f 163 SUPERFAMILY SSF89963 5 90 9.94E-28 T 13-10-2018 IPR036183 YajQ-like superfamily AP3564_09985 7015fc21fd73e89e47b613c12006281f 163 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 4 163 25.624 T 13-10-2018 IPR007551 Protein of unknown function DUF520 AP3564_09985 7015fc21fd73e89e47b613c12006281f 163 Gene3D G3DSA:3.30.70.990 12 101 8.7E-60 T 13-10-2018 IPR035570 UPF0234, N-terminal AP3564_09985 7015fc21fd73e89e47b613c12006281f 163 SUPERFAMILY SSF89963 92 163 3.92E-25 T 13-10-2018 IPR036183 YajQ-like superfamily AP3564_09985 7015fc21fd73e89e47b613c12006281f 163 Pfam PF04461 Protein of unknown function (DUF520) 5 163 5.8E-60 T 13-10-2018 IPR007551 Protein of unknown function DUF520 AP3564_13010 9f860d738b25837201ddc19521ecf436 222 TIGRFAM TIGR04000 thiol_BshB2: bacillithiol biosynthesis deacetylase BshB2 4 218 5.8E-98 T 13-10-2018 IPR023841 Bacillithiol biosynthesis deacetylase BshB2 AP3564_13010 9f860d738b25837201ddc19521ecf436 222 Gene3D G3DSA:3.40.50.10320 1 213 2.6E-53 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 AP3564_13010 9f860d738b25837201ddc19521ecf436 222 Pfam PF02585 GlcNAc-PI de-N-acetylase 6 135 3.2E-30 T 13-10-2018 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 AP3564_13010 9f860d738b25837201ddc19521ecf436 222 SUPERFAMILY SSF102588 2 189 4.19E-51 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 AP3564_10990 839cb0e4e6300f91f14714628fd28bea 97 ProDom PD068665 YXCD 1 95 5.0E-27 T 13-10-2018 IPR020516 Uncharacterised protein family YxcD AP3564_10990 839cb0e4e6300f91f14714628fd28bea 97 Pfam PF10850 Protein of unknown function (DUF2653) 1 87 3.0E-36 T 13-10-2018 IPR020516 Uncharacterised protein family YxcD AP3564_12310 a8d9aea5457d6de9eb5fa9b60f23a53c 307 Gene3D G3DSA:1.25.40.10 23 117 2.2E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AP3564_12310 a8d9aea5457d6de9eb5fa9b60f23a53c 307 SUPERFAMILY SSF48452 36 100 2.66E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AP3564_17910 a080e260d5b78fd19cf9b1e276201f99 305 SMART SM00382 135 282 3.7E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_17910 a080e260d5b78fd19cf9b1e276201f99 305 Gene3D G3DSA:3.40.50.300 117 272 2.2E-23 T 13-10-2018 AP3564_17910 a080e260d5b78fd19cf9b1e276201f99 305 TIGRFAM TIGR02858 spore_III_AA: stage III sporulation protein AA 28 291 2.1E-114 T 13-10-2018 IPR014217 Sporulation stage III, protein AA AP3564_17910 a080e260d5b78fd19cf9b1e276201f99 305 SUPERFAMILY SSF52540 41 260 2.29E-18 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_03690 ecfce8e7e342de0d928542a48ba33489 422 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 339 418 1.5E-13 T 13-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain AP3564_03690 ecfce8e7e342de0d928542a48ba33489 422 Pfam PF13440 Polysaccharide biosynthesis protein 42 336 1.6E-23 T 13-10-2018 AP3564_07680 7943055f5f55a7863ccbb6600f1da742 89 SUPERFAMILY SSF101498 1 83 1.09E-17 T 13-10-2018 IPR035890 Anti-sigma-28 factor FlgM superfamily AP3564_07680 7943055f5f55a7863ccbb6600f1da742 89 Pfam PF04316 Anti-sigma-28 factor, FlgM 31 81 6.8E-15 T 13-10-2018 IPR031316 Anti-sigma-28 factor FlgM, C-terminal AP3564_07680 7943055f5f55a7863ccbb6600f1da742 89 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 4 84 1.6E-14 T 13-10-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 AP3564_15910 a30aa2e1eacb227e6888b43688f3f68f 72 Pfam PF14035 YlzJ-like protein 3 67 1.1E-22 T 13-10-2018 IPR025619 YlzJ-like protein AP3564_03845 8d936a067ac4f4b13116a3b709078364 167 SUPERFAMILY SSF55729 4 164 2.48E-30 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase AP3564_03845 8d936a067ac4f4b13116a3b709078364 167 Gene3D G3DSA:3.40.630.30 3 167 5.2E-41 T 13-10-2018 AP3564_03845 8d936a067ac4f4b13116a3b709078364 167 Pfam PF00583 Acetyltransferase (GNAT) family 37 139 5.1E-13 T 13-10-2018 IPR000182 GNAT domain AP3564_06985 64ddbf74adf3b794ce6b9a56c804c105 67 Pfam PF14146 Domain of unknown function (DUF4305) 18 54 4.4E-13 T 13-10-2018 IPR025426 Protein of unknown function DUF4305 AP3564_06985 64ddbf74adf3b794ce6b9a56c804c105 67 ProDom PD053380 YDIK LIPOPROTEIN TRANSMEMBRANE MEMBRANE PRECURSOR PALMITATE SIGNAL 4 62 2.0E-8 T 13-10-2018 AP3564_19305 5196c7db0fb28f14c23d0f1f5735c2e8 153 Pfam PF03477 ATP cone domain 50 136 6.8E-20 T 13-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 AP3564_19305 5196c7db0fb28f14c23d0f1f5735c2e8 153 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 153 88.176 T 13-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 AP3564_19305 5196c7db0fb28f14c23d0f1f5735c2e8 153 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 147 4.6E-72 T 13-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 AP3564_07035 46954a95770cb9427ef6452f9e339cac 103 Pfam PF01527 Transposase 2 76 1.4E-11 T 13-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AP3564_07035 46954a95770cb9427ef6452f9e339cac 103 SUPERFAMILY SSF46689 1 91 1.11E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_14445 1e9f68778f64e2bce6be693ea141ca56 425 Pfam PF01548 Transposase 19 179 2.8E-36 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_14445 1e9f68778f64e2bce6be693ea141ca56 425 Pfam PF02371 Transposase IS116/IS110/IS902 family 287 371 3.1E-23 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_00400 70a6c60646f370dc88333bca437683fd 298 Pfam PF12784 PD-(D/E)XK nuclease family transposase 1 241 3.1E-50 T 13-10-2018 AP3564_00400 70a6c60646f370dc88333bca437683fd 298 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 2 291 8.8E-46 T 13-10-2018 IPR010106 Recombination-promoting nuclease RpnA AP3564_08835 8eaefdce17655ea75459bcc631d5042b 105 Pfam PF13411 MerR HTH family regulatory protein 12 76 3.4E-14 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AP3564_08835 8eaefdce17655ea75459bcc631d5042b 105 SUPERFAMILY SSF46955 12 103 3.53E-17 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily AP3564_08835 8eaefdce17655ea75459bcc631d5042b 105 Gene3D G3DSA:1.10.1660.10 3 87 6.1E-23 T 13-10-2018 AP3564_08835 8eaefdce17655ea75459bcc631d5042b 105 SMART SM00422 11 79 5.6E-19 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AP3564_12705 13c95b7614e9e777d50448f0c8b8268d 61 Pfam PF17259 Family of unknown function (DUF5325) 1 61 1.6E-20 T 13-10-2018 IPR035211 Protein of unknown function DUF5325 AP3564_03510 af2a2d748e0a6df27504cd28ab069ca4 393 SUPERFAMILY SSF53098 25 343 9.1E-21 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_03510 af2a2d748e0a6df27504cd28ab069ca4 393 Pfam PF01609 Transposase DDE domain 141 344 2.5E-19 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_03510 af2a2d748e0a6df27504cd28ab069ca4 393 Gene3D G3DSA:3.90.350.10 230 327 1.3E-5 T 13-10-2018 IPR014736 Transposase, Tn5-like, core AP3564_19655 af2a2d748e0a6df27504cd28ab069ca4 393 SUPERFAMILY SSF53098 25 343 9.1E-21 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_19655 af2a2d748e0a6df27504cd28ab069ca4 393 Pfam PF01609 Transposase DDE domain 141 344 2.5E-19 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_19655 af2a2d748e0a6df27504cd28ab069ca4 393 Gene3D G3DSA:3.90.350.10 230 327 1.3E-5 T 13-10-2018 IPR014736 Transposase, Tn5-like, core AP3564_00140 ef0c73c32be127ec0a7a77ba7fe52886 277 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 49 131 6.1E-22 T 13-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 AP3564_00140 ef0c73c32be127ec0a7a77ba7fe52886 277 Pfam PF05593 RHS Repeat 27 56 6.6E-6 T 13-10-2018 IPR031325 RHS repeat AP3564_00140 ef0c73c32be127ec0a7a77ba7fe52886 277 Gene3D G3DSA:2.180.10.10 2 130 2.2E-24 T 13-10-2018 AP3564_03380 ef0c73c32be127ec0a7a77ba7fe52886 277 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 49 131 6.1E-22 T 13-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 AP3564_03380 ef0c73c32be127ec0a7a77ba7fe52886 277 Pfam PF05593 RHS Repeat 27 56 6.6E-6 T 13-10-2018 IPR031325 RHS repeat AP3564_03380 ef0c73c32be127ec0a7a77ba7fe52886 277 Gene3D G3DSA:2.180.10.10 2 130 2.2E-24 T 13-10-2018 AP3564_09915 04345c753a33677141c5a8f62e020a3a 257 PIRSF PIRSF005902 1 256 9.2E-50 T 13-10-2018 IPR001130 TatD family GO:0016788 AP3564_09915 04345c753a33677141c5a8f62e020a3a 257 Gene3D G3DSA:3.20.20.140 1 256 6.9E-56 T 13-10-2018 AP3564_09915 04345c753a33677141c5a8f62e020a3a 257 Pfam PF01026 TatD related DNase 2 253 8.6E-45 T 13-10-2018 IPR001130 TatD family GO:0016788 AP3564_09915 04345c753a33677141c5a8f62e020a3a 257 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 190 206 - T 13-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 AP3564_09915 04345c753a33677141c5a8f62e020a3a 257 SUPERFAMILY SSF51556 1 253 2.73E-47 T 13-10-2018 IPR032466 Metal-dependent hydrolase AP3564_09915 04345c753a33677141c5a8f62e020a3a 257 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 1 9 - T 13-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 AP3564_00465 6539c3fbaf6c5c8d57b6d617c3040ff6 184 PIRSF PIRSF038321 1 181 3.2E-86 T 13-10-2018 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor GO:0009401|GO:0016021 AP3564_00465 6539c3fbaf6c5c8d57b6d617c3040ff6 184 TIGRFAM TIGR00821 EII-GUT: PTS system, glucitol/sorbitol-specific, IIC component 1 179 2.2E-81 T 13-10-2018 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor GO:0009401|GO:0016021 AP3564_00465 6539c3fbaf6c5c8d57b6d617c3040ff6 184 Pfam PF03608 PTS system enzyme II sorbitol-specific factor 4 170 3.8E-77 T 13-10-2018 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor GO:0009401|GO:0016021 AP3564_10085 4439d48d1b3e33e85d835a7812dbae5a 282 SUPERFAMILY SSF51735 9 258 3.07E-6 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_10085 4439d48d1b3e33e85d835a7812dbae5a 282 ProDom PD032558 YJAV MED CDS GENES ARGF 9 163 0.002 T 13-10-2018 AP3564_17670 c32094280b658d3ec52a8a5dca9d415a 309 SUPERFAMILY SSF56281 3 305 2.75E-83 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AP3564_17670 c32094280b658d3ec52a8a5dca9d415a 309 Pfam PF12706 Beta-lactamase superfamily domain 203 271 3.1E-8 T 13-10-2018 IPR001279 Metallo-beta-lactamase AP3564_17670 c32094280b658d3ec52a8a5dca9d415a 309 Gene3D G3DSA:3.60.15.10 1 305 3.6E-100 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AP3564_17670 c32094280b658d3ec52a8a5dca9d415a 309 Pfam PF00753 Metallo-beta-lactamase superfamily 29 123 7.3E-10 T 13-10-2018 IPR001279 Metallo-beta-lactamase AP3564_17670 c32094280b658d3ec52a8a5dca9d415a 309 Hamap MF_01818 Ribonuclease BN [rbn]. 1 306 41.385 T 13-10-2018 IPR013471 Ribonuclease Z/BN GO:0016891|GO:0042779 AP3564_17670 c32094280b658d3ec52a8a5dca9d415a 309 TIGRFAM TIGR02651 RNase_Z: ribonuclease Z 3 305 1.6E-116 T 13-10-2018 IPR013471 Ribonuclease Z/BN GO:0016891|GO:0042779 AP3564_13920 73bda909f2ea0c0ee1aacae2fb454a54 235 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 7 216 8.6E-61 T 13-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 AP3564_15745 2e11f719a537d65045bc0ce3719b3915 376 SUPERFAMILY SSF53098 25 318 1.74E-11 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_15745 2e11f719a537d65045bc0ce3719b3915 376 Pfam PF01609 Transposase DDE domain 32 305 6.7E-23 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_11180 000a953885d46058550b1f6b75c703a0 439 Gene3D G3DSA:1.10.3430.10 13 420 3.4E-77 T 13-10-2018 IPR029020 Ammonium/urea transporter AP3564_11180 000a953885d46058550b1f6b75c703a0 439 SUPERFAMILY SSF111352 14 397 3.66E-60 T 13-10-2018 AP3564_11180 000a953885d46058550b1f6b75c703a0 439 Pfam PF00909 Ammonium Transporter Family 16 415 1.8E-62 T 13-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 AP3564_15895 00cbef77d12deb0f9ef2dfd8557b49ed 60 ProDom PD053407 YFHD 1 59 1.0E-10 T 13-10-2018 AP3564_15895 00cbef77d12deb0f9ef2dfd8557b49ed 60 Pfam PF14151 YfhD-like protein 1 59 8.8E-28 T 13-10-2018 IPR025435 YfhD-like protein AP3564_01100 46f3a5be2965e9b24b9f17849e9ec4bf 110 Gene3D G3DSA:3.30.70.100 1 108 5.2E-40 T 13-10-2018 AP3564_01100 46f3a5be2965e9b24b9f17849e9ec4bf 110 SUPERFAMILY SSF54909 2 99 2.36E-23 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel AP3564_01100 46f3a5be2965e9b24b9f17849e9ec4bf 110 Pfam PF03992 Antibiotic biosynthesis monooxygenase 2 78 5.2E-17 T 13-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain AP3564_02805 a0bb7dea60e5f316e93addd7a44e8017 186 Gene3D G3DSA:1.10.1760.20 1 178 3.5E-52 T 13-10-2018 AP3564_02805 a0bb7dea60e5f316e93addd7a44e8017 186 Pfam PF02632 BioY family 29 172 5.1E-36 T 13-10-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 AP3564_02805 a0bb7dea60e5f316e93addd7a44e8017 186 PIRSF PIRSF016661 1 181 1.0E-45 T 13-10-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 AP3564_04585 3d87270cd086befae1815313bf3ddfde 62 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 2 57 4.9E-13 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AP3564_04585 3d87270cd086befae1815313bf3ddfde 62 Gene3D G3DSA:3.30.565.10 1 57 3.3E-20 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_04585 3d87270cd086befae1815313bf3ddfde 62 PRINTS PR00344 Bacterial sensor protein C-terminal signature 19 37 2.8E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_04585 3d87270cd086befae1815313bf3ddfde 62 PRINTS PR00344 Bacterial sensor protein C-terminal signature 2 12 2.8E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_04585 3d87270cd086befae1815313bf3ddfde 62 PRINTS PR00344 Bacterial sensor protein C-terminal signature 43 56 2.8E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AP3564_04585 3d87270cd086befae1815313bf3ddfde 62 SUPERFAMILY SSF55874 2 58 1.33E-19 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AP3564_04725 59813c818e2c97b5fe70012e5ea6681e 447 Gene3D G3DSA:3.30.310.160 223 370 1.4E-47 T 13-10-2018 AP3564_04725 59813c818e2c97b5fe70012e5ea6681e 447 Gene3D G3DSA:3.10.450.310 209 407 1.4E-47 T 13-10-2018 AP3564_04725 59813c818e2c97b5fe70012e5ea6681e 447 Pfam PF07435 YycH protein 4 430 3.7E-81 T 13-10-2018 IPR009996 Regulatory protein YycH AP3564_17875 1829fd133f496c442a03fd4c6256a4be 206 Pfam PF12685 SpoIIIAH-like protein 5 195 8.5E-40 T 13-10-2018 IPR024232 Stage III sporulation protein AH-like AP3564_17875 1829fd133f496c442a03fd4c6256a4be 206 Gene3D G3DSA:3.30.300.270 91 206 2.6E-39 T 13-10-2018 IPR038503 Stage III sporulation protein AH-like superfamily AP3564_14755 c80ddd8fe933dc5fd42648995fc199aa 47 Pfam PF08177 Small acid-soluble spore protein N family 1 46 7.6E-22 T 13-10-2018 IPR012612 Small acid-soluble spore protein, SspN GO:0030436|GO:0042601 AP3564_14755 c80ddd8fe933dc5fd42648995fc199aa 47 Hamap MF_01505 Small, acid-soluble spore protein N [sspN]. 1 47 17.514 T 13-10-2018 IPR012612 Small acid-soluble spore protein, SspN GO:0030436|GO:0042601 AP3564_16935 cf48605b8041b723f07c393ebf1f496a 61 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 1 59 5.0E-10 T 13-10-2018 AP3564_16935 cf48605b8041b723f07c393ebf1f496a 61 Pfam PF14178 YppF-like protein 1 58 8.0E-25 T 13-10-2018 IPR025553 YppF-like protein AP3564_15725 c9b931cd9cffc6c625da43a52ef96a39 97 SUPERFAMILY SSF48295 1 55 1.67E-14 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AP3564_15725 c9b931cd9cffc6c625da43a52ef96a39 97 Pfam PF01527 Transposase 1 77 6.9E-11 T 13-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AP3564_14115 c9b931cd9cffc6c625da43a52ef96a39 97 SUPERFAMILY SSF48295 1 55 1.67E-14 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AP3564_14115 c9b931cd9cffc6c625da43a52ef96a39 97 Pfam PF01527 Transposase 1 77 6.9E-11 T 13-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AP3564_14785 de54067b15e880a99b12632f6e81cac4 141 Pfam PF11084 Protein of unknown function (DUF2621) 3 141 7.3E-75 T 13-10-2018 IPR020203 Uncharacterised protein family, YneK AP3564_14785 de54067b15e880a99b12632f6e81cac4 141 ProDom PD086666 YNEK BH2332 11 141 2.0E-47 T 13-10-2018 IPR020203 Uncharacterised protein family, YneK AP3564_17700 a057e6c670a10db45a03339bc6846cda 215 Gene3D G3DSA:1.50.10.20 1 180 5.5E-36 T 13-10-2018 AP3564_17700 a057e6c670a10db45a03339bc6846cda 215 Pfam PF13249 Squalene-hopene cyclase N-terminal domain 1 166 7.5E-40 T 13-10-2018 IPR032697 Squalene cyclase, N-terminal Reactome: R-HSA-191273|Reactome: R-HSA-2426168 AP3564_17700 a057e6c670a10db45a03339bc6846cda 215 SUPERFAMILY SSF48239 1 171 4.08E-24 T 13-10-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid AP3564_10815 3a226cf876e1487ed05074c083f04ea5 172 Gene3D G3DSA:2.30.30.110 36 172 3.1E-31 T 13-10-2018 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor AP3564_10815 3a226cf876e1487ed05074c083f04ea5 172 SUPERFAMILY SSF50118 50 172 3.92E-21 T 13-10-2018 AP3564_10815 3a226cf876e1487ed05074c083f04ea5 172 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 50 170 4.1E-26 T 13-10-2018 IPR003477 mRNA interferase PemK-like GO:0003677 AP3564_00235 789d616a4112c9235b5cac1358db3386 388 SUPERFAMILY SSF53756 4 380 2.9E-66 T 13-10-2018 AP3564_00235 789d616a4112c9235b5cac1358db3386 388 Pfam PF13439 Glycosyltransferase Family 4 14 171 2.9E-15 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AP3564_00235 789d616a4112c9235b5cac1358db3386 388 Gene3D G3DSA:3.40.50.2000 170 358 4.9E-70 T 13-10-2018 AP3564_00235 789d616a4112c9235b5cac1358db3386 388 TIGRFAM TIGR04047 MSMEG_0565_glyc: glycosyltransferase, MSMEG_0565 family 2 376 2.0E-124 T 13-10-2018 IPR023986 Glycosyltransferase, putative, MSMEG0565 family AP3564_00235 789d616a4112c9235b5cac1358db3386 388 Gene3D G3DSA:3.40.50.2000 8 374 4.9E-70 T 13-10-2018 AP3564_00235 789d616a4112c9235b5cac1358db3386 388 Pfam PF00534 Glycosyl transferases group 1 185 355 3.2E-31 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 AP3564_13625 c15156d460441c7e909e3e3e275dd214 388 Gene3D G3DSA:3.20.20.70 31 316 2.9E-92 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_13625 c15156d460441c7e909e3e3e275dd214 388 TIGRFAM TIGR00238 TIGR00238: KamA family protein 10 301 2.3E-68 T 13-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase AP3564_13625 c15156d460441c7e909e3e3e275dd214 388 SUPERFAMILY SSF102114 82 305 5.23E-22 T 13-10-2018 AP3564_13625 c15156d460441c7e909e3e3e275dd214 388 PIRSF PIRSF004911 2 344 1.6E-96 T 13-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase AP3564_13625 c15156d460441c7e909e3e3e275dd214 388 Pfam PF04055 Radical SAM superfamily 95 248 3.1E-7 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AP3564_01715 d8217d658419d2cebd84e4b76ba8073b 131 TIGRFAM TIGR01987 HI0074: nucleotidyltransferase substrate binding protein, HI0074 family 14 116 3.3E-21 T 13-10-2018 IPR010235 Nucleotidyltransferase substrate binding protein, HI0074 AP3564_01715 d8217d658419d2cebd84e4b76ba8073b 131 Gene3D G3DSA:1.20.120.330 11 128 1.8E-39 T 13-10-2018 AP3564_01715 d8217d658419d2cebd84e4b76ba8073b 131 Pfam PF08780 Nucleotidyltransferase substrate binding protein like 9 126 1.1E-27 T 13-10-2018 IPR010235 Nucleotidyltransferase substrate binding protein, HI0074 AP3564_01715 d8217d658419d2cebd84e4b76ba8073b 131 SUPERFAMILY SSF81593 1 127 1.29E-32 T 13-10-2018 AP3564_12030 b6e866de7af9c2da34626aaea98d8683 191 Pfam PF09819 ABC-type cobalt transport system, permease component 8 123 4.8E-37 T 13-10-2018 IPR017195 ABC-type thiamin-related transport system, permease component 1, predicted AP3564_12030 b6e866de7af9c2da34626aaea98d8683 191 PIRSF PIRSF037394 1 190 2.7E-60 T 13-10-2018 IPR017195 ABC-type thiamin-related transport system, permease component 1, predicted AP3564_03320 40d24b46027452c4962ed761fa01e9da 118 Pfam PF14176 YxiJ-like protein 10 114 4.2E-43 T 13-10-2018 IPR025551 Immunity protein WapI-like AP3564_09305 a54831a10b948de086e063d43d0d9120 77 Pfam PF04070 Domain of unknown function (DUF378) 3 61 2.5E-26 T 13-10-2018 IPR007211 Protein of unknown function DUF378 AP3564_11250 d50bdee4cdacf417becc7d40dd22a435 311 SUPERFAMILY SSF47240 27 250 2.03E-49 T 13-10-2018 IPR009078 Ferritin-like superfamily AP3564_11250 d50bdee4cdacf417becc7d40dd22a435 311 Gene3D G3DSA:1.20.1260.10 1 256 4.8E-76 T 13-10-2018 IPR012347 Ferritin-like AP3564_11250 d50bdee4cdacf417becc7d40dd22a435 311 Pfam PF05138 Phenylacetic acid catabolic protein 21 251 7.2E-57 T 13-10-2018 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C GO:0010124 AP3564_07090 d9c2be116258c334e5361ea68ef05edd 147 Pfam PF01944 Stage II sporulation protein M 23 146 3.4E-21 T 13-10-2018 IPR002798 Stage II sporulation protein M-like AP3564_13470 c288f6760c702ee22857fa4ba6a40877 597 Pfam PF02554 Carbon starvation protein CstA 1 366 4.4E-149 T 13-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 AP3564_13470 c288f6760c702ee22857fa4ba6a40877 597 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 416 537 2.6E-28 T 13-10-2018 IPR025299 CstA, C-terminal domain AP3564_00365 3f860dda43ac9a4ea51a413de29240eb 142 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 33 139 5.7E-16 T 13-10-2018 IPR010106 Recombination-promoting nuclease RpnA AP3564_07470 1506a74a20c9cd87fc02d9179286c512 344 Pfam PF03612 Sorbitol phosphotransferase enzyme II N-terminus 6 196 1.0E-73 T 13-10-2018 IPR011618 Sorbitol phosphotransferase enzyme II, N-terminal GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.198 AP3564_07470 1506a74a20c9cd87fc02d9179286c512 344 Pfam PF07663 Sorbitol phosphotransferase enzyme II C-terminus 251 343 3.0E-45 T 13-10-2018 IPR011638 Sorbitol phosphotransferase enzyme II, C-terminal GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.198 AP3564_11515 beb40c1a7e1be7444b9679ba484c1a44 122 Pfam PF10057 Uncharacterized conserved protein (DUF2294) 5 112 1.1E-39 T 13-10-2018 IPR018745 Domain of unknown function DUF2294 AP3564_06430 7a52e12325753d9e29b74196f9634923 168 Pfam PF13646 HEAT repeats 38 121 1.1E-9 T 13-10-2018 AP3564_06430 7a52e12325753d9e29b74196f9634923 168 Gene3D G3DSA:1.25.10.10 1 167 1.8E-20 T 13-10-2018 IPR011989 Armadillo-like helical AP3564_06430 7a52e12325753d9e29b74196f9634923 168 SUPERFAMILY SSF48371 14 125 2.99E-15 T 13-10-2018 IPR016024 Armadillo-type fold AP3564_16405 184768c247c9dce3afbf5c49dd012188 26 Pfam PF08183 Stage V sporulation protein family 1 25 4.4E-17 T 13-10-2018 IPR012609 Sporulation stage V, protein M AP3564_18030 83ed4c6341607e3f4c368b2ac77b3c68 370 SUPERFAMILY SSF101790 276 364 8.34E-27 T 13-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal AP3564_18030 83ed4c6341607e3f4c368b2ac77b3c68 370 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 268 358 1.1E-26 T 13-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 AP3564_18030 83ed4c6341607e3f4c368b2ac77b3c68 370 Hamap MF_00259 Aminomethyltransferase [gcvT]. 3 364 49.188 T 13-10-2018 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 AP3564_18030 83ed4c6341607e3f4c368b2ac77b3c68 370 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 4 364 2.2E-150 T 13-10-2018 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 AP3564_18030 83ed4c6341607e3f4c368b2ac77b3c68 370 Gene3D G3DSA:4.10.1250.10 238 281 3.2E-18 T 13-10-2018 AP3564_18030 83ed4c6341607e3f4c368b2ac77b3c68 370 Gene3D G3DSA:2.40.30.110 282 364 7.3E-32 T 13-10-2018 AP3564_18030 83ed4c6341607e3f4c368b2ac77b3c68 370 SUPERFAMILY SSF103025 3 283 5.02E-101 T 13-10-2018 AP3564_18030 83ed4c6341607e3f4c368b2ac77b3c68 370 PIRSF PIRSF006487 1 370 5.6E-109 T 13-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 AP3564_18030 83ed4c6341607e3f4c368b2ac77b3c68 370 Gene3D G3DSA:3.30.1360.120 6 237 3.3E-95 T 13-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 AP3564_18030 83ed4c6341607e3f4c368b2ac77b3c68 370 Gene3D G3DSA:3.30.70.1400 53 138 3.3E-95 T 13-10-2018 AP3564_18030 83ed4c6341607e3f4c368b2ac77b3c68 370 Pfam PF01571 Aminomethyltransferase folate-binding domain 9 260 5.3E-99 T 13-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain AP3564_09925 184395575b9b670ee33c62394864824f 113 ProDom PD067392 MEMBRANE UPF0344 TRANSMEMBRANE MW0851 BCE1257 SIMILAR YISL SAR0931 BCE33L1051 BT9727_1053 1 95 8.0E-20 T 13-10-2018 IPR010899 Protein of unknown function UPF0344 AP3564_09925 184395575b9b670ee33c62394864824f 113 Pfam PF07457 Protein of unknown function (DUF1516) 2 106 5.3E-28 T 13-10-2018 IPR010899 Protein of unknown function UPF0344 AP3564_05550 0edc2ba252d121fde918987c0b43a17c 155 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 11 30 1.6E-5 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site AP3564_05550 0edc2ba252d121fde918987c0b43a17c 155 Pfam PF07963 Prokaryotic N-terminal methylation motif 8 31 5.1E-7 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site AP3564_11575 be0a27e3c8afc499f8536de6cc821f20 285 SUPERFAMILY SSF161098 90 275 1.7E-39 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_11575 be0a27e3c8afc499f8536de6cc821f20 285 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 279 1.7E-24 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AP3564_11575 be0a27e3c8afc499f8536de6cc821f20 285 Gene3D G3DSA:1.10.3720.10 88 281 4.5E-35 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_10300 7a6e63ab58492b2e3f2ceadac3e57f0c 224 Pfam PF04239 Protein of unknown function (DUF421) 88 199 2.7E-32 T 13-10-2018 IPR007353 Protein of unknown function DUF421 AP3564_10300 7a6e63ab58492b2e3f2ceadac3e57f0c 224 Gene3D G3DSA:3.30.240.20 167 224 4.0E-20 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily AP3564_10300 7a6e63ab58492b2e3f2ceadac3e57f0c 224 Gene3D G3DSA:3.30.240.20 79 154 2.1E-25 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily AP3564_18900 fc41cb59b2e80a24c49368ea74629115 412 Pfam PF01566 Natural resistance-associated macrophage protein 31 377 6.5E-35 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 AP3564_14530 fde0a176a096f7934fb44430958ac92f 305 Pfam PF12833 Helix-turn-helix domain 215 292 4.0E-23 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AP3564_14530 fde0a176a096f7934fb44430958ac92f 305 SUPERFAMILY SSF46689 193 243 4.57E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_14530 fde0a176a096f7934fb44430958ac92f 305 SUPERFAMILY SSF46689 245 295 9.86E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_14530 fde0a176a096f7934fb44430958ac92f 305 Gene3D G3DSA:1.10.10.60 193 296 3.3E-31 T 13-10-2018 AP3564_14530 fde0a176a096f7934fb44430958ac92f 305 Pfam PF06719 AraC-type transcriptional regulator N-terminus 29 180 3.1E-48 T 13-10-2018 IPR009594 Transcription regulator HTH, AraC, N-terminal AP3564_14530 fde0a176a096f7934fb44430958ac92f 305 SMART SM00342 209 292 1.4E-25 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AP3564_17615 4734dd453cb60d5c6dcecde05fb5cb6a 107 SUPERFAMILY SSF89360 1 103 3.4E-25 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 AP3564_17615 4734dd453cb60d5c6dcecde05fb5cb6a 107 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 105 1.4E-25 T 13-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AP3564_17615 4734dd453cb60d5c6dcecde05fb5cb6a 107 Gene3D G3DSA:2.60.300.12 1 103 1.4E-7 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 AP3564_08600 5669b380760bd43fdbe3873c0a10da76 318 TIGRFAM TIGR01826 CofD_related: conserved hypothetical protein 6 314 9.9E-130 T 13-10-2018 IPR010119 Gluconeogenesis factor AP3564_08600 5669b380760bd43fdbe3873c0a10da76 318 Hamap MF_00973 Gluconeogenesis factor. 2 316 36.094 T 13-10-2018 IPR010119 Gluconeogenesis factor AP3564_08600 5669b380760bd43fdbe3873c0a10da76 318 Gene3D G3DSA:3.40.50.12300 1 316 1.9E-134 T 13-10-2018 IPR038136 Gluconeogenesis factor superfamily AP3564_08600 5669b380760bd43fdbe3873c0a10da76 318 SUPERFAMILY SSF142338 4 310 1.24E-109 T 13-10-2018 AP3564_08600 5669b380760bd43fdbe3873c0a10da76 318 Pfam PF01933 Uncharacterised protein family UPF0052 6 291 1.8E-108 T 13-10-2018 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 AP3564_12815 b1919ba736dc12638a42dafb91f10fb7 193 Pfam PF14005 YpjP-like protein 61 191 6.4E-56 T 13-10-2018 IPR025616 YpjP-like protein AP3564_11425 f5bfb657d664a92303fc5b3fffcc5f98 52 Pfam PF07561 Domain of Unknown Function (DUF1540) 5 47 3.5E-16 T 13-10-2018 IPR011437 Domain of unknown function DUF1540 AP3564_05920 4b4bf3832b25b2a8429276d38fe0079e 371 Pfam PF14294 Domain of unknown function (DUF4372) 8 76 6.3E-8 T 13-10-2018 IPR025399 Domain of unknown function DUF4372 AP3564_05920 4b4bf3832b25b2a8429276d38fe0079e 371 Pfam PF01609 Transposase DDE domain 121 329 3.3E-29 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_05920 4b4bf3832b25b2a8429276d38fe0079e 371 SUPERFAMILY SSF53098 88 359 3.26E-35 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_04170 a43a4852d60d82783f2dede657779362 123 Pfam PF04241 Protein of unknown function (DUF423) 18 105 1.3E-33 T 13-10-2018 IPR006696 Protein of unknown function DUF423 AP3564_07385 d0f8690fc26db3d6127507a462183ca0 306 SUPERFAMILY SSF81345 11 270 4.71E-28 T 13-10-2018 IPR037294 ABC transporter, BtuC-like AP3564_07385 d0f8690fc26db3d6127507a462183ca0 306 Gene3D G3DSA:1.10.3470.10 13 277 8.5E-7 T 13-10-2018 IPR037294 ABC transporter, BtuC-like AP3564_07385 d0f8690fc26db3d6127507a462183ca0 306 Pfam PF00950 ABC 3 transport family 9 272 1.4E-67 T 13-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 AP3564_12060 1a3506a8e9a9c7e15c3b95fe9616e73d 249 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 221 243 3.8E-5 T 13-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AP3564_12060 1a3506a8e9a9c7e15c3b95fe9616e73d 249 TIGRFAM TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD 4 244 1.3E-107 T 13-10-2018 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD AP3564_12060 1a3506a8e9a9c7e15c3b95fe9616e73d 249 SMART SM00382 29 210 1.4E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_12060 1a3506a8e9a9c7e15c3b95fe9616e73d 249 Pfam PF00005 ABC transporter 20 174 1.8E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AP3564_12060 1a3506a8e9a9c7e15c3b95fe9616e73d 249 SUPERFAMILY SSF52540 3 242 7.34E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_12060 1a3506a8e9a9c7e15c3b95fe9616e73d 249 Gene3D G3DSA:3.40.50.300 1 244 6.0E-56 T 13-10-2018 AP3564_01500 35cec4e673cd20a65ccabe98d2c239bf 411 Pfam PF04235 Protein of unknown function (DUF418) 244 393 9.4E-46 T 13-10-2018 IPR007349 Domain of unknown function DUF418 AP3564_04595 0795dc960c00517da680fb673676b3f8 457 SUPERFAMILY SSF53098 301 422 6.22E-6 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_04595 0795dc960c00517da680fb673676b3f8 457 Pfam PF13701 Transposase DDE domain group 1 13 452 3.3E-33 T 13-10-2018 IPR025668 Transposase DDE domain AP3564_03070 c5ab849171d9c6c138dfa7b07ab9bb75 61 Pfam PF14120 YhzD-like protein 1 61 1.8E-26 T 13-10-2018 IPR025544 YhzD-like protein AP3564_10670 f9221edcfccf9ef178ac83256f494b1e 242 Pfam PF13386 Cytochrome C biogenesis protein transmembrane region 30 235 3.6E-22 T 13-10-2018 IPR039447 Urease accessory protein UreH-like, transmembrane domain AP3564_00275 b03a5fd717aa6ffb76a76692243a1d7b 302 Pfam PF02653 Branched-chain amino acid transport system / permease component 3 250 4.8E-37 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AP3564_17510 c77d74be768a4a5bc1fd424fa1a92232 205 Gene3D G3DSA:2.60.480.10 1 97 2.2E-11 T 13-10-2018 IPR038548 Stage V sporulation protein AA, N-terminal domain superfamily AP3564_17510 c77d74be768a4a5bc1fd424fa1a92232 205 Pfam PF12164 Stage V sporulation protein AA 2 88 4.1E-19 T 13-10-2018 IPR021997 Stage V sporulation protein AA AP3564_15770 f2ed1e749225e890940068af853332e0 135 SMART SM00422 12 80 7.1E-27 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AP3564_15770 f2ed1e749225e890940068af853332e0 135 SUPERFAMILY SSF46955 12 110 5.49E-20 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily AP3564_15770 f2ed1e749225e890940068af853332e0 135 Gene3D G3DSA:1.10.1660.10 1 83 6.2E-26 T 13-10-2018 AP3564_15770 f2ed1e749225e890940068af853332e0 135 Pfam PF13411 MerR HTH family regulatory protein 13 78 1.1E-19 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AP3564_16995 c295ace484c4f0e321a5543ebf243171 56 Pfam PF14084 Protein of unknown function (DUF4264) 4 56 3.5E-24 T 13-10-2018 IPR012190 Uncharacterised conserved protein UCP036698, YpmA AP3564_16995 c295ace484c4f0e321a5543ebf243171 56 PIRSF PIRSF036698 1 56 1.1E-32 T 13-10-2018 IPR012190 Uncharacterised conserved protein UCP036698, YpmA AP3564_06990 8bf50ca91edb69dd7f195013bd312750 243 Pfam PF02517 CAAX protease self-immunity 129 213 1.9E-16 T 13-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 AP3564_01975 6124ac101df3644a1af2511430e7de4f 226 Pfam PF04893 Yip1 domain 43 213 2.1E-8 T 13-10-2018 IPR006977 Yip1 domain GO:0016020 AP3564_16000 d3041e38a6cc2956d29ef2b6f63afa63 99 Pfam PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 5 94 2.6E-20 T 13-10-2018 IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 AP3564_16000 d3041e38a6cc2956d29ef2b6f63afa63 99 Gene3D G3DSA:3.30.1330.30 2 99 2.4E-38 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like AP3564_16000 d3041e38a6cc2956d29ef2b6f63afa63 99 SUPERFAMILY SSF55315 5 95 1.57E-27 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like AP3564_13100 57a5169551ed9c6083768e555cef2efe 79 ProDom PD059966 COTJA SPORE PROTEIN-RELATED COAT-ASSOCIATED COTJAA JA 12 79 5.0E-24 T 13-10-2018 IPR020256 Spore coat protein CotJA AP3564_13100 57a5169551ed9c6083768e555cef2efe 79 Pfam PF11007 Spore coat associated protein JA (CotJA) 35 70 1.4E-7 T 13-10-2018 IPR020256 Spore coat protein CotJA AP3564_00915 15397ba710042c8894a1bb7b454ffda6 444 Pfam PF10923 P-loop Domain of unknown function (DUF2791) 9 412 3.4E-91 T 13-10-2018 IPR021228 Protein of unknown function DUF2791 AP3564_00915 15397ba710042c8894a1bb7b454ffda6 444 SUPERFAMILY SSF52540 29 357 8.22E-12 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_06770 1e27f126bda073fc52d230eb4fe41543 159 Pfam PF03703 Bacterial PH domain 75 148 2.5E-16 T 13-10-2018 IPR005182 Domain of unknown function DUF304 AP3564_04475 38f9c429d1b416d6a6fb4395044032ec 640 Pfam PF02687 FtsX-like permease family 85 179 2.6E-8 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 AP3564_04475 38f9c429d1b416d6a6fb4395044032ec 640 PIRSF PIRSF018968 1 640 1.0E-158 T 13-10-2018 IPR027022 ABC transporter permease protein, BceB-type GO:0055085 AP3564_13050 43eec3190926bd976f2372e317bed1fb 293 Gene3D G3DSA:3.40.50.300 42 211 1.8E-33 T 13-10-2018 AP3564_13050 43eec3190926bd976f2372e317bed1fb 293 SUPERFAMILY SSF52540 44 269 3.38E-33 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_13050 43eec3190926bd976f2372e317bed1fb 293 SMART SM00382 53 204 0.001 T 13-10-2018 IPR003593 AAA+ ATPase domain AP3564_13050 43eec3190926bd976f2372e317bed1fb 293 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 57 75 1.7E-5 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 AP3564_13050 43eec3190926bd976f2372e317bed1fb 293 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 129 147 1.7E-5 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 AP3564_13050 43eec3190926bd976f2372e317bed1fb 293 Pfam PF07728 AAA domain (dynein-related subfamily) 56 193 6.1E-27 T 13-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 AP3564_08845 b7b43bf3250350cdd827440ccbf07881 254 Pfam PF13115 YtkA-like 32 115 4.4E-16 T 13-10-2018 IPR032693 YtkA-like domain AP3564_08845 b7b43bf3250350cdd827440ccbf07881 254 Pfam PF13115 YtkA-like 155 235 8.8E-14 T 13-10-2018 IPR032693 YtkA-like domain AP3564_15815 555d83db83845f3a29f91931ab382c49 141 PIRSF PIRSF021287 1 122 5.0E-52 T 13-10-2018 IPR016783 Biofilm formation YmcA AP3564_15815 555d83db83845f3a29f91931ab382c49 141 SUPERFAMILY SSF158622 2 122 1.57E-36 T 13-10-2018 IPR023378 YheA/YmcA-like domain superfamily AP3564_15815 555d83db83845f3a29f91931ab382c49 141 Gene3D G3DSA:1.20.1500.10 1 123 7.8E-38 T 13-10-2018 IPR023378 YheA/YmcA-like domain superfamily AP3564_15815 555d83db83845f3a29f91931ab382c49 141 Pfam PF06133 Control of competence regulator ComK, YlbF/YmcA 8 112 5.4E-25 T 13-10-2018 IPR010368 Control of competence regulator ComK, YlbF/YmcA AP3564_17795 75ce63f86c8bc1aee974f4d04c474bd7 82 ProDom PD058321 YQZF GSC13 TRANSMEMBRANE IG GKC13 MEMBRANE PROTEINS BH2767 RBL05544 SIMILAR 1 77 9.0E-13 T 13-10-2018 IPR020138 Uncharacterised protein family YqzF AP3564_17795 75ce63f86c8bc1aee974f4d04c474bd7 82 Pfam PF11118 Protein of unknown function (DUF2627) 3 77 5.3E-38 T 13-10-2018 IPR020138 Uncharacterised protein family YqzF AP3564_18000 747e49d243c541143da41a4ac2433ec8 195 SUPERFAMILY SSF52980 3 85 2.84E-22 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AP3564_18000 747e49d243c541143da41a4ac2433ec8 195 Pfam PF08721 TnsA endonuclease C terminal 84 169 2.3E-16 T 13-10-2018 IPR014832 TnsA endonuclease C-terminal AP3564_18000 747e49d243c541143da41a4ac2433ec8 195 Gene3D G3DSA:3.40.1350.10 1 85 5.9E-26 T 13-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 AP3564_18000 747e49d243c541143da41a4ac2433ec8 195 Pfam PF08722 TnsA endonuclease N terminal 4 82 1.4E-21 T 13-10-2018 IPR014833 TnsA endonuclease, N-terminal AP3564_10450 012dd02173b0506ad639f1766a40eac9 195 Pfam PF13787 Protein of unknown function with HXXEE motif 20 139 1.1E-21 T 13-10-2018 IPR025671 Protein of unknown function with HXXEE motif AP3564_09145 66d30e4ab8e5c471de4579605ef93c49 72 Pfam PF10676 Spore germination protein gerPA/gerPF 2 71 1.9E-18 T 13-10-2018 IPR019618 Spore germination protein GerPA/GerPF AP3564_14070 5958148ffb61c8ca4ec5afa2f280a954 425 Pfam PF02371 Transposase IS116/IS110/IS902 family 287 371 4.6E-23 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_14070 5958148ffb61c8ca4ec5afa2f280a954 425 Pfam PF01548 Transposase 19 179 1.8E-35 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_14890 fb6cd278123dc4976fdcd802aacfab5c 214 Pfam PF04012 PspA/IM30 family 2 203 5.2E-18 T 13-10-2018 IPR007157 PspA/IM30 AP3564_00695 4992786babe91889a229dcc775de927c 238 Gene3D G3DSA:3.40.50.10420 29 203 3.0E-14 T 13-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily AP3564_00695 4992786babe91889a229dcc775de927c 238 SUPERFAMILY SSF100950 1 213 3.63E-35 T 13-10-2018 IPR037171 NagB/RpiA transferase-like AP3564_00695 4992786babe91889a229dcc775de927c 238 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 3 195 1.6E-33 T 13-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase AP3564_05570 4b558f53e57f7f21237b9fbabfe4d655 153 Gene3D G3DSA:1.10.1200.150 73 153 1.5E-32 T 13-10-2018 AP3564_05570 4b558f53e57f7f21237b9fbabfe4d655 153 Pfam PF05848 Firmicute transcriptional repressor of class III stress genes (CtsR) 3 150 3.6E-59 T 13-10-2018 IPR008463 Transcriptional repressor of class III stress genes GO:0003677|GO:0006355 AP3564_05570 4b558f53e57f7f21237b9fbabfe4d655 153 Gene3D G3DSA:1.10.10.1240 2 72 5.2E-36 T 13-10-2018 AP3564_05570 4b558f53e57f7f21237b9fbabfe4d655 153 PIRSF PIRSF010607 1 153 6.7E-68 T 13-10-2018 IPR008463 Transcriptional repressor of class III stress genes GO:0003677|GO:0006355 AP3564_02720 f968ffdaf0cbe71f4289b54f21542713 455 Pfam PF06782 Uncharacterised protein family (UPF0236) 1 453 8.2E-172 T 13-10-2018 IPR009620 Uncharacterised protein family UPF0236 AP3564_17895 60fda5edbc6794387dbc4d34a48aaa57 130 TIGRFAM TIGR02849 spore_III_AD: stage III sporulation protein AD 27 127 1.0E-37 T 13-10-2018 IPR014211 Stage III sporulation protein AD AP3564_17895 60fda5edbc6794387dbc4d34a48aaa57 130 Pfam PF06686 Stage III sporulation protein AC/AD protein family 71 126 2.1E-18 T 13-10-2018 IPR025664 Stage III sporulation protein AC/AD family AP3564_17895 60fda5edbc6794387dbc4d34a48aaa57 130 Pfam PF06686 Stage III sporulation protein AC/AD protein family 3 56 1.6E-13 T 13-10-2018 IPR025664 Stage III sporulation protein AC/AD family AP3564_00475 19272d34ee346fcdfb3c7304d0748a93 121 Gene3D G3DSA:2.40.33.40 1 121 6.4E-34 T 13-10-2018 IPR036665 Phosphotransferase system, glucitol/sorbitol-specific IIA component superfamily GO:0005737|GO:0008982|GO:0009401 AP3564_00475 19272d34ee346fcdfb3c7304d0748a93 121 ProDom PD015842 PTS IIA COMPONENT GLUCITOL/SORBITOL-SPECIFIC SYSTEM ENZYME TRANSFERASE SYSTEM PHOSPHOTRANSFERASE EIIA 7 116 1.0E-27 T 13-10-2018 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component GO:0005737|GO:0008982|GO:0009401 AP3564_00475 19272d34ee346fcdfb3c7304d0748a93 121 Pfam PF03829 PTS system glucitol/sorbitol-specific IIA component 4 116 5.2E-40 T 13-10-2018 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component GO:0005737|GO:0008982|GO:0009401 AP3564_00475 19272d34ee346fcdfb3c7304d0748a93 121 SUPERFAMILY SSF141530 3 118 8.5E-37 T 13-10-2018 IPR036665 Phosphotransferase system, glucitol/sorbitol-specific IIA component superfamily GO:0005737|GO:0008982|GO:0009401 AP3564_00260 a5f860ed33bac31b41b2f40b21e851a8 309 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 9 306 7.4E-51 T 13-10-2018 IPR010106 Recombination-promoting nuclease RpnA AP3564_00260 a5f860ed33bac31b41b2f40b21e851a8 309 Pfam PF12784 PD-(D/E)XK nuclease family transposase 8 247 1.6E-51 T 13-10-2018 AP3564_13900 6c0bf8857158e0256c86f33ed2efef90 143 Gene3D G3DSA:3.40.50.620 1 142 3.3E-36 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AP3564_13900 6c0bf8857158e0256c86f33ed2efef90 143 SUPERFAMILY SSF52402 1 141 2.86E-35 T 13-10-2018 AP3564_13900 6c0bf8857158e0256c86f33ed2efef90 143 PRINTS PR01438 Universal stress protein signature 117 139 1.0E-20 T 13-10-2018 IPR006015 Universal stress protein A AP3564_13900 6c0bf8857158e0256c86f33ed2efef90 143 PRINTS PR01438 Universal stress protein signature 99 111 1.0E-20 T 13-10-2018 IPR006015 Universal stress protein A AP3564_13900 6c0bf8857158e0256c86f33ed2efef90 143 PRINTS PR01438 Universal stress protein signature 1 19 1.0E-20 T 13-10-2018 IPR006015 Universal stress protein A AP3564_13900 6c0bf8857158e0256c86f33ed2efef90 143 Pfam PF00582 Universal stress protein family 1 139 4.0E-35 T 13-10-2018 IPR006016 UspA AP3564_01665 a88a4bdcd16c2eb54b27907659275689 260 Pfam PF01522 Polysaccharide deacetylase 58 180 2.5E-34 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 AP3564_01665 a88a4bdcd16c2eb54b27907659275689 260 TIGRFAM TIGR02884 spore_pdaA: delta-lactam-biosynthetic de-N-acetylase 26 248 6.0E-112 T 13-10-2018 IPR014235 Peptidoglycan-N-acetylmuramic acid deacetylase PdaA AP3564_01665 a88a4bdcd16c2eb54b27907659275689 260 SUPERFAMILY SSF88713 48 248 1.18E-68 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AP3564_01665 a88a4bdcd16c2eb54b27907659275689 260 Gene3D G3DSA:3.20.20.370 11 252 2.0E-89 T 13-10-2018 AP3564_01470 0643b97665e5a347164edeb24d16e87e 280 SUPERFAMILY SSF117892 87 216 1.83E-11 T 13-10-2018 IPR036013 Band 7/SPFH domain superfamily AP3564_01470 0643b97665e5a347164edeb24d16e87e 280 SMART SM00244 49 213 5.6E-10 T 13-10-2018 IPR001107 Band 7 domain AP3564_01470 0643b97665e5a347164edeb24d16e87e 280 Gene3D G3DSA:3.30.479.30 83 215 3.6E-8 T 13-10-2018 AP3564_01470 0643b97665e5a347164edeb24d16e87e 280 Pfam PF01145 SPFH domain / Band 7 family 53 226 3.6E-22 T 13-10-2018 IPR001107 Band 7 domain AP3564_04175 c2f4e36543d28ac7401d1599e92355a2 101 ProDom PD705231 YWDI GROUP-SPECIFIC 1 101 1.0E-10 T 13-10-2018 IPR035218 Protein of unknown function DUF5327 AP3564_04175 c2f4e36543d28ac7401d1599e92355a2 101 Pfam PF17261 Family of unknown function (DUF5327) 2 101 2.0E-21 T 13-10-2018 IPR035218 Protein of unknown function DUF5327 AP3564_01430 3f1cfc67a951d3e1b1201d2c1e8a5ec0 252 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 75 246 8.0E-22 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AP3564_01430 3f1cfc67a951d3e1b1201d2c1e8a5ec0 252 Gene3D G3DSA:1.10.3720.10 52 246 3.7E-21 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_01430 3f1cfc67a951d3e1b1201d2c1e8a5ec0 252 SUPERFAMILY SSF161098 51 236 4.97E-29 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_17425 961753fcf0417344b8b7bf88c00388e2 196 Pfam PF07670 Nucleoside recognition 43 149 9.6E-12 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 AP3564_03650 5c71bdeec70e9c1afc6ca9776d5b2ec9 279 Gene3D G3DSA:3.90.25.10 159 272 3.7E-117 T 13-10-2018 AP3564_03650 5c71bdeec70e9c1afc6ca9776d5b2ec9 279 SUPERFAMILY SSF51735 1 277 1.89E-102 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_03650 5c71bdeec70e9c1afc6ca9776d5b2ec9 279 Pfam PF04321 RmlD substrate binding domain 1 277 1.1E-109 T 13-10-2018 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581|Reactome: R-HSA-5689880 AP3564_03650 5c71bdeec70e9c1afc6ca9776d5b2ec9 279 Gene3D G3DSA:3.40.50.720 3 266 3.7E-117 T 13-10-2018 AP3564_03650 5c71bdeec70e9c1afc6ca9776d5b2ec9 279 TIGRFAM TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase 2 278 5.8E-108 T 13-10-2018 IPR005913 dTDP-4-dehydrorhamnose reductase family Reactome: R-HSA-156581|Reactome: R-HSA-5689880 AP3564_03355 af84ab470cca5cb1c7f902ef28fa1cc7 242 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 14 96 1.5E-22 T 13-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 AP3564_03355 af84ab470cca5cb1c7f902ef28fa1cc7 242 Gene3D G3DSA:2.180.10.10 1 95 2.8E-23 T 13-10-2018 AP3564_01300 287f9ff63a94ab79d1619d4e742b5089 263 Gene3D G3DSA:1.10.3720.10 5 263 3.6E-45 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_01300 287f9ff63a94ab79d1619d4e742b5089 263 SUPERFAMILY SSF161098 3 258 1.12E-47 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_01300 287f9ff63a94ab79d1619d4e742b5089 263 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 79 259 3.2E-8 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AP3564_11480 701ca42c506f04b599f924d493f56d49 144 SUPERFAMILY SSF52540 2 144 1.01E-14 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AP3564_11480 701ca42c506f04b599f924d493f56d49 144 Gene3D G3DSA:3.40.50.300 13 144 1.6E-9 T 13-10-2018 AP3564_11480 701ca42c506f04b599f924d493f56d49 144 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 38 141 8.5E-12 T 13-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 AP3564_11400 8e397d7e929e7b1e9f270f6df54bb185 414 Pfam PF02371 Transposase IS116/IS110/IS902 family 257 342 2.7E-15 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_11400 8e397d7e929e7b1e9f270f6df54bb185 414 Pfam PF01548 Transposase 11 155 7.6E-24 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_13195 a8f20e841c6cae0c64f6aece13d0bb76 303 Gene3D G3DSA:3.50.50.60 116 228 2.3E-76 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_13195 a8f20e841c6cae0c64f6aece13d0bb76 303 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 285 7.0E-30 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AP3564_13195 a8f20e841c6cae0c64f6aece13d0bb76 303 SUPERFAMILY SSF51905 1 299 6.48E-40 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_13195 a8f20e841c6cae0c64f6aece13d0bb76 303 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 103 111 3.0E-13 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_13195 a8f20e841c6cae0c64f6aece13d0bb76 303 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 141 165 3.0E-13 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_13195 a8f20e841c6cae0c64f6aece13d0bb76 303 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 126 138 3.0E-13 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_13195 a8f20e841c6cae0c64f6aece13d0bb76 303 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 5 27 3.0E-13 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AP3564_13195 a8f20e841c6cae0c64f6aece13d0bb76 303 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 145 163 1.8E-16 T 13-10-2018 AP3564_13195 a8f20e841c6cae0c64f6aece13d0bb76 303 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 251 273 1.8E-16 T 13-10-2018 AP3564_13195 a8f20e841c6cae0c64f6aece13d0bb76 303 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 1.8E-16 T 13-10-2018 AP3564_13195 a8f20e841c6cae0c64f6aece13d0bb76 303 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 1.8E-16 T 13-10-2018 AP3564_13195 a8f20e841c6cae0c64f6aece13d0bb76 303 Gene3D G3DSA:3.50.50.60 4 292 2.3E-76 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_12850 574d6c7a214d3e942c67c07b05d4b725 190 Pfam PF02630 SCO1/SenC 9 173 1.1E-47 T 13-10-2018 IPR003782 Copper chaperone SCO1/SenC Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AP3564_12850 574d6c7a214d3e942c67c07b05d4b725 190 SUPERFAMILY SSF52833 29 188 4.92E-44 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AP3564_12850 574d6c7a214d3e942c67c07b05d4b725 190 Gene3D G3DSA:3.40.30.10 20 189 1.1E-60 T 13-10-2018 AP3564_13730 80919dc8db513b1f805bfd64368aca6d 56 Pfam PF04328 Selenoprotein, putative 3 56 7.1E-23 T 13-10-2018 IPR007423 Selenoprotein, putative AP3564_18205 914ea4138aaf3fe2944c931b0ea402a8 160 Pfam PF04306 Protein of unknown function (DUF456) 21 158 3.8E-38 T 13-10-2018 IPR007403 Protein of unknown function DUF456 AP3564_09330 a4aa30dafd9c9bba4f13d8e60b5b971e 227 Pfam PF04298 Putative neutral zinc metallopeptidase 8 221 5.4E-90 T 13-10-2018 IPR007395 Putative neutral zinc metallopeptidase AP3564_06230 4f8c9454fe50ab69c1f79b088f512d61 393 SUPERFAMILY SSF53098 25 342 3.49E-20 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_06230 4f8c9454fe50ab69c1f79b088f512d61 393 Pfam PF01609 Transposase DDE domain 141 344 1.9E-18 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_06230 4f8c9454fe50ab69c1f79b088f512d61 393 Gene3D G3DSA:3.90.350.10 228 327 3.2E-5 T 13-10-2018 IPR014736 Transposase, Tn5-like, core AP3564_14195 b7f499c9d6f8fc599a121a8b14156816 400 Pfam PF01609 Transposase DDE domain 134 384 4.3E-20 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_14195 b7f499c9d6f8fc599a121a8b14156816 400 Pfam PF05598 Transposase domain (DUF772) 49 118 2.5E-10 T 13-10-2018 IPR008490 Transposase InsH, N-terminal AP3564_14195 b7f499c9d6f8fc599a121a8b14156816 400 SUPERFAMILY SSF53098 178 390 7.59E-6 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_12745 bc150283c3456fa3bf483f9d59e4cbcc 390 Pfam PF01098 Cell cycle protein 12 375 6.8E-109 T 13-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AP3564_12745 bc150283c3456fa3bf483f9d59e4cbcc 390 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 333 357 - T 13-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AP3564_08340 e37a92b8d9efda2d67728bf6fcc5c5fb 80 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 1 55 5.2E-10 T 13-10-2018 IPR000477 Reverse transcriptase domain AP3564_08340 e37a92b8d9efda2d67728bf6fcc5c5fb 80 SUPERFAMILY SSF56672 1 65 1.42E-9 T 13-10-2018 AP3564_13560 573a5d7e382632cdaef1794f61943471 146 Pfam PF04657 Putative inner membrane exporter, YdcZ 5 139 1.4E-42 T 13-10-2018 IPR006750 Putative inner membrane exporter, YdcZ AP3564_01005 af2baae8d660148cecaae1456e5bb268 270 Pfam PF06114 IrrE N-terminal-like domain 58 178 2.1E-6 T 13-10-2018 IPR010359 IrrE N-terminal-like domain AP3564_06730 4826702ffb232444ed9b008c5c4f1219 471 Pfam PF01645 Conserved region in glutamate synthase 121 429 4.2E-56 T 13-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 AP3564_06730 4826702ffb232444ed9b008c5c4f1219 471 SUPERFAMILY SSF51395 49 460 2.2E-65 T 13-10-2018 AP3564_06730 4826702ffb232444ed9b008c5c4f1219 471 Gene3D G3DSA:3.20.20.70 105 467 1.1E-73 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AP3564_06730 4826702ffb232444ed9b008c5c4f1219 471 PIRSF PIRSF006429 30 471 6.0E-97 T 13-10-2018 IPR024188 Glutamate synthase large subunit-like protein AP3564_02770 ad7915769de71ccb0644a8a82748f37a 292 Pfam PF12671 Putative amidase domain 129 282 6.8E-36 T 13-10-2018 IPR024301 Putative amidase domain AP3564_07790 ad9ddd247b3c91b73127442b31189e56 104 SUPERFAMILY SSF52266 1 93 3.66E-9 T 13-10-2018 AP3564_07790 ad9ddd247b3c91b73127442b31189e56 104 Gene3D G3DSA:3.40.50.1110 1 92 4.0E-8 T 13-10-2018 IPR036514 SGNH hydrolase superfamily AP3564_12555 2678d0d69981d1703c9fdf94d0fa863d 220 Gene3D G3DSA:3.30.70.1450 137 217 2.7E-28 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 AP3564_12555 2678d0d69981d1703c9fdf94d0fa863d 220 Pfam PF02254 TrkA-N domain 5 120 3.7E-30 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 AP3564_12555 2678d0d69981d1703c9fdf94d0fa863d 220 SUPERFAMILY SSF51735 4 135 2.88E-39 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_12555 2678d0d69981d1703c9fdf94d0fa863d 220 Gene3D G3DSA:3.40.50.720 1 136 2.4E-39 T 13-10-2018 AP3564_12555 2678d0d69981d1703c9fdf94d0fa863d 220 Pfam PF02080 TrkA-C domain 149 216 8.1E-17 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AP3564_12555 2678d0d69981d1703c9fdf94d0fa863d 220 SUPERFAMILY SSF116726 131 215 1.7E-21 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 AP3564_17185 4bb89b18bd87f816a0223bb7861a0a8f 258 PRINTS PR00996 Glutamate methyltransferase family signature 99 119 2.0E-40 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AP3564_17185 4bb89b18bd87f816a0223bb7861a0a8f 258 PRINTS PR00996 Glutamate methyltransferase family signature 197 211 2.0E-40 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AP3564_17185 4bb89b18bd87f816a0223bb7861a0a8f 258 PRINTS PR00996 Glutamate methyltransferase family signature 25 38 2.0E-40 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AP3564_17185 4bb89b18bd87f816a0223bb7861a0a8f 258 PRINTS PR00996 Glutamate methyltransferase family signature 216 239 2.0E-40 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AP3564_17185 4bb89b18bd87f816a0223bb7861a0a8f 258 PRINTS PR00996 Glutamate methyltransferase family signature 62 74 2.0E-40 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AP3564_17185 4bb89b18bd87f816a0223bb7861a0a8f 258 PRINTS PR00996 Glutamate methyltransferase family signature 131 147 2.0E-40 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AP3564_17185 4bb89b18bd87f816a0223bb7861a0a8f 258 SMART SM00138 3 256 7.9E-97 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AP3564_17185 4bb89b18bd87f816a0223bb7861a0a8f 258 SUPERFAMILY SSF53335 69 241 6.13E-48 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_17185 4bb89b18bd87f816a0223bb7861a0a8f 258 Pfam PF01739 CheR methyltransferase, SAM binding domain 69 242 9.3E-60 T 13-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal AP3564_17185 4bb89b18bd87f816a0223bb7861a0a8f 258 SUPERFAMILY SSF47757 2 68 9.02E-12 T 13-10-2018 AP3564_17185 4bb89b18bd87f816a0223bb7861a0a8f 258 Gene3D G3DSA:3.40.50.150 68 258 5.7E-66 T 13-10-2018 AP3564_17185 4bb89b18bd87f816a0223bb7861a0a8f 258 Pfam PF03705 CheR methyltransferase, all-alpha domain 4 56 2.7E-13 T 13-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal AP3564_15595 0045c1e4eb849cc82d97f4140c0cec7d 508 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 446 2.9E-148 T 13-10-2018 IPR002823 Protein of unknown function DUF112, transmembrane AP3564_07040 97e1fcd34f4cb8122b49ef3b6da0eaf8 275 Gene3D G3DSA:3.20.20.150 5 243 2.1E-54 T 13-10-2018 AP3564_07040 97e1fcd34f4cb8122b49ef3b6da0eaf8 275 SUPERFAMILY SSF51658 4 244 1.83E-52 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily AP3564_07040 97e1fcd34f4cb8122b49ef3b6da0eaf8 275 Pfam PF01261 Xylose isomerase-like TIM barrel 22 204 1.5E-26 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AP3564_18775 537b3934500d29a2ebc7f81e354b477e 66 Pfam PF11146 Protein of unknown function (DUF2905) 6 61 3.0E-20 T 13-10-2018 IPR021320 Protein of unknown function DUF2905 AP3564_13545 92a75215f82417cfbe619122d9753598 150 SMART SM00347 26 129 1.8E-24 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_13545 92a75215f82417cfbe619122d9753598 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 70 85 2.5E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_13545 92a75215f82417cfbe619122d9753598 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 89 105 2.5E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_13545 92a75215f82417cfbe619122d9753598 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 53 69 2.5E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_13545 92a75215f82417cfbe619122d9753598 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 119 139 2.5E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_13545 92a75215f82417cfbe619122d9753598 150 Gene3D G3DSA:1.10.10.10 1 146 2.4E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AP3564_13545 92a75215f82417cfbe619122d9753598 150 SUPERFAMILY SSF46785 8 145 1.69E-29 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AP3564_13545 92a75215f82417cfbe619122d9753598 150 Pfam PF01047 MarR family 36 93 2.5E-16 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AP3564_09015 fae4d96c6f56d4595577eebd87b7a495 210 Pfam PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) 26 176 2.9E-27 T 13-10-2018 IPR019076 Sporulation lipoprotein YhcN/YlaJ-like AP3564_04965 26ebf25ffac50752d31ec9df46ce9d7b 398 Pfam PF01266 FAD dependent oxidoreductase 3 390 3.7E-63 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AP3564_04965 26ebf25ffac50752d31ec9df46ce9d7b 398 SUPERFAMILY SSF51905 1 283 1.04E-43 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AP3564_11950 6e1415142384fe96239c14e05e087bb3 305 Gene3D G3DSA:3.40.50.1980 136 304 3.6E-57 T 13-10-2018 AP3564_11950 6e1415142384fe96239c14e05e087bb3 305 Gene3D G3DSA:3.40.50.1980 47 135 1.1E-24 T 13-10-2018 AP3564_11950 6e1415142384fe96239c14e05e087bb3 305 SUPERFAMILY SSF53807 37 297 5.1E-51 T 13-10-2018 AP3564_11950 6e1415142384fe96239c14e05e087bb3 305 Pfam PF01497 Periplasmic binding protein 59 279 7.2E-29 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain AP3564_12535 610348bc45cd6a5f1bcfeef15e840224 256 Pfam PF01925 Sulfite exporter TauE/SafE 6 251 7.3E-51 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AP3564_06735 5028119aaa9c8547b1873a20513aa4bc 159 Gene3D G3DSA:1.20.120.660 14 90 2.0E-7 T 13-10-2018 AP3564_06735 5028119aaa9c8547b1873a20513aa4bc 159 Pfam PF02915 Rubrerythrin 38 154 9.9E-11 T 13-10-2018 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 AP3564_06735 5028119aaa9c8547b1873a20513aa4bc 159 SUPERFAMILY SSF47240 31 157 2.07E-21 T 13-10-2018 IPR009078 Ferritin-like superfamily AP3564_06735 5028119aaa9c8547b1873a20513aa4bc 159 Gene3D G3DSA:1.20.1260.10 91 159 1.8E-6 T 13-10-2018 IPR012347 Ferritin-like AP3564_17270 41ecf335d6abb8a1886b1d6e220e5c8c 198 PIRSF PIRSF036710 1 198 3.3E-40 T 13-10-2018 IPR014617 Predicted membrane protein, Bacillus YphA type AP3564_15340 aa7186aab34dc739fbb3516902f7353f 291 Gene3D G3DSA:1.10.3720.10 46 289 1.4E-68 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_15340 aa7186aab34dc739fbb3516902f7353f 291 SUPERFAMILY SSF161098 50 281 2.75E-57 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_15340 aa7186aab34dc739fbb3516902f7353f 291 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 283 1.4E-16 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AP3564_05670 397b64fbeb2360febd60de24bb1ab747 166 Pfam PF00466 Ribosomal protein L10 5 101 2.2E-30 T 13-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 AP3564_05670 397b64fbeb2360febd60de24bb1ab747 166 ProSitePatterns PS01109 Ribosomal protein L10 signature. 8 42 - T 13-10-2018 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AP3564_05670 397b64fbeb2360febd60de24bb1ab747 166 SUPERFAMILY SSF160369 5 160 2.09E-56 T 13-10-2018 AP3564_05670 397b64fbeb2360febd60de24bb1ab747 166 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 6 143 0.01 T 13-10-2018 AP3564_05670 397b64fbeb2360febd60de24bb1ab747 166 Gene3D G3DSA:3.30.70.1730 4 133 7.8E-44 T 13-10-2018 AP3564_05670 397b64fbeb2360febd60de24bb1ab747 166 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 161 29.817 T 13-10-2018 IPR022973 Ribosomal protein L10 AP3564_18620 6a0f24b24ba7566c4be14e04e8d49652 309 Pfam PF01136 Peptidase family U32 75 306 8.4E-68 T 13-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 AP3564_04105 fb1c67266e0a0f04603d1b02a877587f 204 SUPERFAMILY SSF50729 14 203 4.55E-65 T 13-10-2018 AP3564_04105 fb1c67266e0a0f04603d1b02a877587f 204 Pfam PF08000 Bacterial PH domain 10 132 2.9E-37 T 13-10-2018 IPR012544 Bacterial Pleckstrin homology domain AP3564_04105 fb1c67266e0a0f04603d1b02a877587f 204 Gene3D G3DSA:2.30.29.50 12 115 4.3E-48 T 13-10-2018 IPR037063 Bacterial Pleckstrin homology domain superfamily AP3564_04105 fb1c67266e0a0f04603d1b02a877587f 204 Gene3D G3DSA:1.10.287.210 116 204 8.3E-29 T 13-10-2018 AP3564_04105 fb1c67266e0a0f04603d1b02a877587f 204 Pfam PF11724 YvbH-like oligomerisation region 144 203 1.2E-22 T 13-10-2018 IPR021722 Uncharacterised domain YvbH-like, oligomerisation domain AP3564_03705 96ce7e8d70d01e3e7a2e175ff3261b87 361 Gene3D G3DSA:3.40.50.2000 168 345 7.3E-17 T 13-10-2018 AP3564_03705 96ce7e8d70d01e3e7a2e175ff3261b87 361 Pfam PF13439 Glycosyltransferase Family 4 13 154 5.8E-11 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AP3564_03705 96ce7e8d70d01e3e7a2e175ff3261b87 361 Pfam PF13692 Glycosyl transferases group 1 189 330 2.8E-12 T 13-10-2018 AP3564_03705 96ce7e8d70d01e3e7a2e175ff3261b87 361 SUPERFAMILY SSF53756 2 339 3.98E-36 T 13-10-2018 AP3564_03705 96ce7e8d70d01e3e7a2e175ff3261b87 361 Gene3D G3DSA:3.40.50.2000 1 160 2.4E-17 T 13-10-2018 AP3564_15505 56c5f2423b72630ff8a17298352ec7de 393 Gene3D G3DSA:3.90.350.10 212 327 3.1E-5 T 13-10-2018 IPR014736 Transposase, Tn5-like, core AP3564_15505 56c5f2423b72630ff8a17298352ec7de 393 SUPERFAMILY SSF53098 24 344 3.26E-22 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_15505 56c5f2423b72630ff8a17298352ec7de 393 Pfam PF01609 Transposase DDE domain 141 344 1.4E-20 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_08880 784b11b8cdcb44d33f32a4813d7219c9 83 Pfam PF10835 Protein of unknown function (DUF2573) 4 80 1.7E-37 T 13-10-2018 IPR020393 Uncharacterised protein family YusU AP3564_08880 784b11b8cdcb44d33f32a4813d7219c9 83 ProDom PD065427 YUSU IG COIL COILED BH3491 1 79 1.0E-24 T 13-10-2018 IPR020393 Uncharacterised protein family YusU AP3564_08685 c08d682d3f8615b49e921003cdce1095 343 Pfam PF10137 Predicted nucleotide-binding protein containing TIR-like domain 203 323 2.1E-32 T 13-10-2018 IPR019302 Nucleotide-binding protein, predicted, TIR-like domain AP3564_07565 76c778eb7106073dc9aef52d5c1666e1 235 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 53 228 4.7E-61 T 13-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 AP3564_07565 76c778eb7106073dc9aef52d5c1666e1 235 Hamap MF_02070 N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase. 1 235 59.378 T 13-10-2018 IPR034714 N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase GO:0047244 MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819 AP3564_07565 76c778eb7106073dc9aef52d5c1666e1 235 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 58 222 1.4E-61 T 13-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 AP3564_05020 78a815fc43ecff4fdce1f9c995bd3126 88 Pfam PF07441 SigmaK-factor processing regulatory protein BofA 12 84 5.8E-21 T 13-10-2018 IPR010001 SigmaK-factor processing regulatory BofA AP3564_05020 78a815fc43ecff4fdce1f9c995bd3126 88 TIGRFAM TIGR02862 spore_BofA: pro-sigmaK processing inhibitor BofA 6 86 8.4E-28 T 13-10-2018 IPR010001 SigmaK-factor processing regulatory BofA AP3564_06725 9af81232cb1c0427c385ca1a19075d77 388 TIGRFAM TIGR00912 2A0309: spore germination protein (amino acid permease) 16 372 4.4E-58 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 AP3564_06725 9af81232cb1c0427c385ca1a19075d77 388 Pfam PF03845 Spore germination protein 15 330 2.5E-63 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 AP3564_07425 e45f5aa7805d25a6b9de0c9bc33a2c48 296 TIGRFAM TIGR04087 YqxM_for_SipW: YqxM protein 12 179 1.3E-26 T 13-10-2018 IPR023848 TasA anchoring/assembly protein GO:0062039 AP3564_17060 8328ae29087f4d95fc606ae66600f6d1 199 Pfam PF07187 Protein of unknown function (DUF1405) 24 182 4.0E-57 T 13-10-2018 IPR009845 Protein of unknown function DUF1405 AP3564_10945 9819c61280dd04b42fde92b130429853 158 Pfam PF01610 Transposase 51 147 4.4E-24 T 13-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain AP3564_02850 4bc749352337d3c03f5c66fcfe7d72a3 140 Gene3D G3DSA:3.10.580.10 1 123 2.0E-43 T 13-10-2018 AP3564_02850 4bc749352337d3c03f5c66fcfe7d72a3 140 SMART SM00116 75 122 5.4E-13 T 13-10-2018 IPR000644 CBS domain AP3564_02850 4bc749352337d3c03f5c66fcfe7d72a3 140 SMART SM00116 11 58 2.7E-13 T 13-10-2018 IPR000644 CBS domain AP3564_02850 4bc749352337d3c03f5c66fcfe7d72a3 140 Pfam PF00571 CBS domain 68 118 1.6E-15 T 13-10-2018 IPR000644 CBS domain AP3564_02850 4bc749352337d3c03f5c66fcfe7d72a3 140 Pfam PF00571 CBS domain 4 54 2.1E-15 T 13-10-2018 IPR000644 CBS domain AP3564_02850 4bc749352337d3c03f5c66fcfe7d72a3 140 SUPERFAMILY SSF54631 3 118 7.83E-39 T 13-10-2018 AP3564_17245 ed5feccd319685f15122f4926b41791d 66 ProDom PD054986 YPHE TRANSMEMBRANE MEMBRANE PRECURSOR BH1643 SIGNAL 1 66 1.0E-15 T 13-10-2018 IPR020076 Protein of unknown function DUF2768 AP3564_17245 ed5feccd319685f15122f4926b41791d 66 Pfam PF10966 Protein of unknown function (DUF2768) 7 63 1.5E-23 T 13-10-2018 IPR020076 Protein of unknown function DUF2768 AP3564_18630 c6d0dec881beeec39f036630d6c44b1d 376 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 27 374 2.1E-111 T 13-10-2018 IPR003770 Endolytic murein transglycosylase AP3564_18630 c6d0dec881beeec39f036630d6c44b1d 376 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 32 375 34.522 T 13-10-2018 IPR003770 Endolytic murein transglycosylase AP3564_18630 c6d0dec881beeec39f036630d6c44b1d 376 Pfam PF02618 YceG-like family 68 369 4.4E-83 T 13-10-2018 IPR003770 Endolytic murein transglycosylase AP3564_18630 c6d0dec881beeec39f036630d6c44b1d 376 Gene3D G3DSA:1.10.8.1150 62 137 1.7E-28 T 13-10-2018 AP3564_01230 0d8206552ebfba489ecee96ff137d4d0 408 Gene3D G3DSA:1.20.1530.20 2 386 3.4E-69 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily AP3564_01230 0d8206552ebfba489ecee96ff137d4d0 408 Pfam PF00999 Sodium/hydrogen exchanger family 12 377 5.2E-59 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AP3564_09050 7c08c0378f7eb18bce2f0ce2710395ac 327 SUPERFAMILY SSF56112 2 310 5.51E-9 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily AP3564_09050 7c08c0378f7eb18bce2f0ce2710395ac 327 TIGRFAM TIGR02905 spore_yutH: spore coat protein YutH 2 308 4.4E-102 T 13-10-2018 IPR014254 Spore coat protein YutH AP3564_09050 7c08c0378f7eb18bce2f0ce2710395ac 327 Gene3D G3DSA:3.90.1200.10 89 308 5.7E-18 T 13-10-2018 AP3564_02635 01a0ed988c2edddd5d88196be8d839a1 214 Gene3D G3DSA:3.40.50.720 2 214 3.3E-57 T 13-10-2018 AP3564_02635 01a0ed988c2edddd5d88196be8d839a1 214 Pfam PF13460 NAD(P)H-binding 7 191 2.5E-51 T 13-10-2018 IPR016040 NAD(P)-binding domain AP3564_02635 01a0ed988c2edddd5d88196be8d839a1 214 SUPERFAMILY SSF51735 1 204 2.62E-45 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AP3564_14210 cf24626e39e7bbee4f28f2cb2e537b74 319 Gene3D G3DSA:1.20.1530.20 1 307 4.2E-114 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily AP3564_14210 cf24626e39e7bbee4f28f2cb2e537b74 319 Pfam PF01758 Sodium Bile acid symporter family 42 220 1.1E-44 T 13-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 AP3564_04135 419cd74e618cc7a6f0e18f3ea943579e 168 Pfam PF08741 YwhD family 5 166 3.9E-86 T 13-10-2018 IPR014852 Uncharacterised protein YwhD AP3564_05905 e6d26b7b3573f371d7af017e00f0deae 145 Pfam PF10730 Protein of unknown function (DUF2521) 1 145 2.9E-49 T 13-10-2018 IPR019667 Uncharacterised protein family YbaK AP3564_16175 334a0839c7cc108b0153e25d1f841855 147 Pfam PF03963 Flagellar hook capping protein - N-terminal region 13 74 4.6E-25 T 13-10-2018 IPR005648 Flagellar hook capping protein AP3564_16040 593ee7277c8f63807e7a0ff34286048a 270 Pfam PF01148 Cytidylyltransferase family 2 262 2.2E-69 T 13-10-2018 AP3564_16040 593ee7277c8f63807e7a0ff34286048a 270 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 221 247 - T 13-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 AP3564_14775 507cefd1313922dcaacc98e0104a2426 46 Hamap MF_00666 Small, acid-soluble spore protein P [sspP]. 1 46 14.882 T 13-10-2018 IPR012614 Small acid-soluble spore protein, SspP GO:0030435 AP3564_14775 507cefd1313922dcaacc98e0104a2426 46 Pfam PF08179 Small acid-soluble spore protein P family 2 41 3.6E-14 T 13-10-2018 IPR012614 Small acid-soluble spore protein, SspP GO:0030435 AP3564_14865 fd62e12b3e66b16fc39318057529de63 313 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 266 1.2E-32 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AP3564_14865 fd62e12b3e66b16fc39318057529de63 313 Gene3D G3DSA:3.10.180.10 7 303 3.9E-120 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AP3564_14865 fd62e12b3e66b16fc39318057529de63 313 Gene3D G3DSA:3.10.180.10 67 210 3.9E-120 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AP3564_14865 fd62e12b3e66b16fc39318057529de63 313 SUPERFAMILY SSF54593 5 280 1.26E-46 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AP3564_08975 94b2ea210f0896d456f75b0618c3fdb6 465 Pfam PF01458 Uncharacterized protein family (UPF0051) 211 436 1.6E-75 T 13-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 AP3564_08975 94b2ea210f0896d456f75b0618c3fdb6 465 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 10 456 6.8E-234 T 13-10-2018 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 AP3564_08975 94b2ea210f0896d456f75b0618c3fdb6 465 SUPERFAMILY SSF101960 32 462 2.88E-143 T 13-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily AP3564_08740 83fab020695220e4bc0dc23e0077ecf7 286 SUPERFAMILY SSF161098 75 262 5.23E-28 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_08740 83fab020695220e4bc0dc23e0077ecf7 286 Gene3D G3DSA:1.10.3720.10 72 277 4.2E-22 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_08740 83fab020695220e4bc0dc23e0077ecf7 286 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 100 270 5.0E-26 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AP3564_14475 7bbb1a51feae18795d81c266fcf215f3 161 Pfam PF13346 ABC-2 family transporter protein 5 156 5.0E-22 T 13-10-2018 IPR025699 ABC-2 membrane transporter-like AP3564_10355 7812cecd168de8d05f15256c5d94b6ba 176 Pfam PF08905 Domain of unknown function (DUF1850) 53 142 6.1E-22 T 13-10-2018 IPR015001 Protein of unknown function DUF1850 AP3564_16465 e89c1eecf07313872aa3401f420c8edc 87 ProDom PD063023 UPF0296 YLZA BA4010/GBAA4010/BAS3723 BLI01788/BL02292 BT9727_3613 BC3870 TM1690 CBDBA43 SYC0519_C BCE33L3631 5 78 3.0E-28 T 13-10-2018 IPR007169 Extracellular matrix regulatory protein A AP3564_16465 e89c1eecf07313872aa3401f420c8edc 87 Hamap MF_01503 UPF0296 protein . 3 85 29.715 T 13-10-2018 IPR007169 Extracellular matrix regulatory protein A AP3564_16465 e89c1eecf07313872aa3401f420c8edc 87 Pfam PF04025 Domain of unknown function (DUF370) 5 77 1.1E-37 T 13-10-2018 IPR007169 Extracellular matrix regulatory protein A AP3564_02025 c5de63c09f17712a00d25bd49537b8b7 141 Gene3D G3DSA:3.40.630.30 1 139 2.0E-23 T 13-10-2018 AP3564_02025 c5de63c09f17712a00d25bd49537b8b7 141 SUPERFAMILY SSF55729 1 131 9.66E-24 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase AP3564_02025 c5de63c09f17712a00d25bd49537b8b7 141 Pfam PF00583 Acetyltransferase (GNAT) family 22 127 4.2E-14 T 13-10-2018 IPR000182 GNAT domain AP3564_04685 e1e5021e379ca44b8b6b5e55d39258f3 360 Pfam PF01844 HNH endonuclease 4 46 4.7E-8 T 13-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 AP3564_15175 559ed3c910d69a0b50c4952d2f1c852d 461 SUPERFAMILY SSF53448 47 365 4.13E-47 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AP3564_15175 559ed3c910d69a0b50c4952d2f1c852d 461 Pfam PF13641 Glycosyltransferase like family 2 54 319 3.4E-22 T 13-10-2018 AP3564_15175 559ed3c910d69a0b50c4952d2f1c852d 461 Gene3D G3DSA:3.90.550.10 43 315 3.6E-41 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AP3564_12630 ee5cc6e521528b5fcf635498f39e0abc 184 Pfam PF02371 Transposase IS116/IS110/IS902 family 48 129 3.3E-19 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_02890 39c7fc047a8fd130b4369c214ae77c20 147 Pfam PF07070 SpoOM protein 3 127 6.0E-23 T 13-10-2018 IPR009776 Sporulation stage 0, protein M AP3564_13185 82cd27f84582ae02d9aa409b5ab0a41e 68 Pfam PF07870 Protein of unknown function (DUF1657) 7 55 1.1E-15 T 13-10-2018 IPR012452 Protein of unknown function DUF1657 AP3564_00900 e9af2269fbddf6b708888d32cf36200f 425 Pfam PF02371 Transposase IS116/IS110/IS902 family 287 371 3.1E-23 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_00900 e9af2269fbddf6b708888d32cf36200f 425 Pfam PF01548 Transposase 19 179 3.1E-36 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_04350 4da92a1b4b156de6c951962cd67c6942 332 Pfam PF02653 Branched-chain amino acid transport system / permease component 27 290 8.8E-41 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AP3564_12470 abd50b89d0b094212112a0f35a7a1618 229 Pfam PF04893 Yip1 domain 23 213 2.3E-23 T 13-10-2018 IPR006977 Yip1 domain GO:0016020 AP3564_03220 60241b18d8563ee4e23235603b959213 101 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 5 94 2.8E-21 T 13-10-2018 IPR008407 Branched-chain amino acid transport, AzlD AP3564_02915 cfb472dbefaefc06bc1cd7aaa525eb26 135 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 3 121 18.405 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 AP3564_02915 cfb472dbefaefc06bc1cd7aaa525eb26 135 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 4 115 1.0E-21 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 AP3564_02915 cfb472dbefaefc06bc1cd7aaa525eb26 135 TIGRFAM TIGR00494 crcB: protein CrcB 4 118 4.6E-25 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 AP3564_07400 a9f02ee42d37f39b4c947dc125a0f012 468 TIGRFAM TIGR04383 acidic_w_LPXTA: processed acidic surface protein 140 467 7.0E-64 T 13-10-2018 IPR030832 Processed acidic surface protein AP3564_07400 a9f02ee42d37f39b4c947dc125a0f012 468 TIGRFAM TIGR04383 acidic_w_LPXTA: processed acidic surface protein 1 148 1.8E-23 T 13-10-2018 IPR030832 Processed acidic surface protein AP3564_02945 1ad376fe258ec18ef01a5015ac16bc45 286 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 273 4.1E-36 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AP3564_16915 5b9bc984f126c3c2fbc723fd34a1ab75 419 SUPERFAMILY SSF53098 92 269 8.73E-23 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_16915 5b9bc984f126c3c2fbc723fd34a1ab75 419 Gene3D G3DSA:3.30.420.10 122 229 2.4E-5 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AP3564_16915 5b9bc984f126c3c2fbc723fd34a1ab75 419 Pfam PF13482 RNase_H superfamily 98 266 1.2E-34 T 13-10-2018 IPR038720 YprB, ribonuclease H-like domain AP3564_16760 fd3880084d995f7ac9d231a537e3e1b2 174 Pfam PF02620 Uncharacterized ACR, COG1399 56 166 3.0E-21 T 13-10-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD AP3564_08910 25b43279150028da1bf1e4c69ab09e39 119 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 3 117 2.0E-37 T 13-10-2018 IPR006504 Transcriptional regulator Spx/MgsR AP3564_08910 25b43279150028da1bf1e4c69ab09e39 119 Gene3D G3DSA:3.40.30.10 1 117 1.3E-49 T 13-10-2018 AP3564_08910 25b43279150028da1bf1e4c69ab09e39 119 SUPERFAMILY SSF52833 3 117 1.24E-39 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AP3564_08910 25b43279150028da1bf1e4c69ab09e39 119 Pfam PF03960 ArsC family 6 116 1.6E-18 T 13-10-2018 IPR006660 Arsenate reductase-like AP3564_06790 ca421ddec5ea08188c18f436a3b13859 349 Gene3D G3DSA:2.50.20.10 40 225 4.6E-12 T 13-10-2018 AP3564_06790 ca421ddec5ea08188c18f436a3b13859 349 SUPERFAMILY SSF89392 41 216 4.71E-20 T 13-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX AP3564_02400 bfc9eab63d737e6a07760696d2697715 261 Pfam PF06182 ABC-2 family transporter protein 33 260 1.3E-55 T 13-10-2018 IPR010390 Protein of unknown function DUF990 AP3564_03185 0a34fd447a96b75601cef35ba079fa84 43 Pfam PF14149 YhfH-like protein 4 39 7.6E-20 T 13-10-2018 IPR025432 YhfH-like protein AP3564_10120 6b7b40c4310daa1b78b4cc4e73ea15ab 250 Hamap MF_01860 UPF0736 protein . 1 250 49.499 T 13-10-2018 IPR020909 UPF0736 AP3564_10120 6b7b40c4310daa1b78b4cc4e73ea15ab 250 Pfam PF12227 Protein of unknown function (DUF3603) 35 250 1.4E-110 T 13-10-2018 IPR020909 UPF0736 AP3564_00420 de97e8bb1feefc86c2bc7f83a485f47d 270 Pfam PF12679 ABC-2 family transporter protein 3 261 2.2E-8 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 AP3564_09775 24d3d2cacae101f729bf229299c6987e 458 Pfam PF03606 C4-dicarboxylate anaerobic carrier 1 452 4.8E-119 T 13-10-2018 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 AP3564_13335 70d6459e77a61a1c54238efbdbbb3601 149 SUPERFAMILY SSF109854 6 147 3.66E-23 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes AP3564_13335 70d6459e77a61a1c54238efbdbbb3601 149 Pfam PF05163 DinB family 3 147 2.9E-17 T 13-10-2018 IPR007837 DNA damage-inducible protein DinB AP3564_13335 70d6459e77a61a1c54238efbdbbb3601 149 Gene3D G3DSA:1.20.120.450 1 147 3.6E-32 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes AP3564_12290 8003e8d6f00b4b33048214a0e708818c 632 Pfam PF09369 Domain of unknown function (DUF1998) 502 601 4.1E-8 T 13-10-2018 IPR018973 DEAD/DEAH-box helicase, putative AP3564_15015 1649fef7406e9738286529b6da183702 91 Pfam PF13239 2TM domain 11 88 7.1E-29 T 13-10-2018 IPR025698 2TM domain AP3564_19425 d5ef4dfa4985e1981dea5631e0f692f7 99 Pfam PF14007 YtpI-like protein 6 90 1.1E-35 T 13-10-2018 IPR025618 YtpI-like protein AP3564_03710 37296280e7bad246f41e2f64aa9a2931 468 Gene3D G3DSA:3.40.50.12780 37 364 3.5E-79 T 13-10-2018 AP3564_03710 37296280e7bad246f41e2f64aa9a2931 468 SUPERFAMILY SSF56801 118 453 9.77E-16 T 13-10-2018 AP3564_00905 5dba646cfac455d94280be70fbef28da 687 SUPERFAMILY SSF53335 23 178 2.87E-18 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_00905 5dba646cfac455d94280be70fbef28da 687 Gene3D G3DSA:3.40.50.150 22 170 9.1E-19 T 13-10-2018 AP3564_11030 f859d041cd1f7596bf68d5711af1bb7a 258 Pfam PF06182 ABC-2 family transporter protein 54 256 2.7E-18 T 13-10-2018 IPR010390 Protein of unknown function DUF990 AP3564_09955 70f16109e105b702c01a491108fc2ca5 351 SUPERFAMILY SSF51004 12 349 4.84E-50 T 13-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily AP3564_09955 70f16109e105b702c01a491108fc2ca5 351 Pfam PF10282 Lactonase, 7-bladed beta-propeller 8 347 6.8E-134 T 13-10-2018 IPR019405 Lactonase, 7-bladed beta propeller AP3564_09955 70f16109e105b702c01a491108fc2ca5 351 Gene3D G3DSA:2.130.10.10 7 350 5.2E-129 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 AP3564_03800 374daf22c43e19c01098fdd8da9b5f4d 88 ProDom PD053619 EPUA PRECURSOR SIGNAL PEPTIDE YFDG EXTRACELLULAR OB2955 BH3736 GBS0884 SMU.1524C 48 82 7.0E-8 T 13-10-2018 IPR024596 DNA-directed RNA polymerase subunit beta/EpuA AP3564_03800 374daf22c43e19c01098fdd8da9b5f4d 88 Pfam PF11772 DNA-directed RNA polymerase subunit beta 48 86 2.6E-17 T 13-10-2018 IPR024596 DNA-directed RNA polymerase subunit beta/EpuA AP3564_16805 378c2e7754c7eb49e996d5b7f1b5b916 90 PIRSF PIRSF031653 1 90 3.5E-35 T 13-10-2018 IPR016979 Protein of unknown function DUF2129 AP3564_16805 378c2e7754c7eb49e996d5b7f1b5b916 90 Hamap MF_01126 UPF0298 protein . 1 78 22.335 T 13-10-2018 IPR016979 Protein of unknown function DUF2129 AP3564_16805 378c2e7754c7eb49e996d5b7f1b5b916 90 Pfam PF09902 Uncharacterized protein conserved in bacteria (DUF2129) 5 74 2.3E-31 T 13-10-2018 IPR016979 Protein of unknown function DUF2129 AP3564_14020 768b250907e42dcf908f660fb3670763 135 Pfam PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 41 84 2.5E-12 T 13-10-2018 IPR029261 Transposase IS204/IS1001/IS1096/IS1165, zinc-finger AP3564_14385 a709c9d94eef0f1a5b0b3835f7e20720 264 Pfam PF13847 Methyltransferase domain 79 224 5.2E-40 T 13-10-2018 IPR025714 Methyltransferase domain AP3564_14385 a709c9d94eef0f1a5b0b3835f7e20720 264 SUPERFAMILY SSF53335 58 235 4.77E-45 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AP3564_14385 a709c9d94eef0f1a5b0b3835f7e20720 264 Gene3D G3DSA:3.40.50.150 58 250 4.8E-57 T 13-10-2018 AP3564_13435 ba8b2be40d0b712fdd9fd7c159d8a484 453 SUPERFAMILY SSF53098 50 412 9.1E-48 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_13435 ba8b2be40d0b712fdd9fd7c159d8a484 453 Pfam PF13546 DDE superfamily endonuclease 73 256 2.1E-23 T 13-10-2018 IPR038721 Transposase IS701-like, DDE domain AP3564_08875 0a7a6515ac49be7080ba3ff205fff880 225 Pfam PF11575 FhuF 2Fe-2S C-terminal domain 196 216 1.9E-6 T 13-10-2018 IPR024726 Ferric iron reductase, C-terminal GO:0051537 AP3564_08875 0a7a6515ac49be7080ba3ff205fff880 225 Pfam PF06276 Ferric iron reductase FhuF-like transporter 30 144 2.9E-10 T 13-10-2018 IPR022770 Ferric iron reductase FhuF domain AP3564_08045 e8fae83ab332ed3e059d08d4dcf51baf 417 Pfam PF12698 ABC-2 family transporter protein 20 387 2.2E-55 T 13-10-2018 AP3564_06405 0b71855578dbbf7d94e722862645c5ce 322 Pfam PF02653 Branched-chain amino acid transport system / permease component 36 301 5.9E-38 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AP3564_16395 9844a8ed3f3e8ba3a8baf22e816bb5ff 120 Pfam PF03780 Asp23 family, cell envelope-related function 9 116 5.7E-36 T 13-10-2018 IPR005531 Alkaline shock protein Asp23 AP3564_13475 68e60506c84b4ed03f9ddb1118dbad3e 191 Gene3D G3DSA:1.10.357.10 1 191 1.8E-31 T 13-10-2018 AP3564_13475 68e60506c84b4ed03f9ddb1118dbad3e 191 SUPERFAMILY SSF46689 4 69 2.05E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_13475 68e60506c84b4ed03f9ddb1118dbad3e 191 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 1.7E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_13475 68e60506c84b4ed03f9ddb1118dbad3e 191 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 1.7E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_13475 68e60506c84b4ed03f9ddb1118dbad3e 191 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 59 1.6E-17 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AP3564_14795 85aa8460a869ad42fe4ac1eafbe70380 118 SMART SM00448 1 113 4.9E-35 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_14795 85aa8460a869ad42fe4ac1eafbe70380 118 Pfam PF00072 Response regulator receiver domain 4 114 2.6E-33 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AP3564_14795 85aa8460a869ad42fe4ac1eafbe70380 118 Gene3D G3DSA:3.40.50.12740 1 118 5.4E-39 T 13-10-2018 AP3564_14795 85aa8460a869ad42fe4ac1eafbe70380 118 SUPERFAMILY SSF52172 2 118 9.39E-38 T 13-10-2018 IPR011006 CheY-like superfamily AP3564_00840 edfccebbe51cae5761837029e36a51a3 414 Pfam PF01548 Transposase 11 155 1.2E-23 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_00840 edfccebbe51cae5761837029e36a51a3 414 Pfam PF02371 Transposase IS116/IS110/IS902 family 259 342 3.0E-15 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AP3564_18420 e9941579ed79e762f3d142ecd2e9f62c 184 ProDom PD102989 YKOP PLASMID 9 183 2.0E-54 T 13-10-2018 AP3564_15625 b7ecb11514bc1ef397c206e08a4e5606 90 Pfam PF13143 Protein of unknown function (DUF3986) 2 87 1.9E-30 T 13-10-2018 IPR025047 Protein of unknown function DUF3986 AP3564_04115 eb4639322afbdde9843118897ee793c8 74 Pfam PF07293 Protein of unknown function (DUF1450) 8 73 2.8E-8 T 13-10-2018 IPR009910 Protein of unknown function DUF1450 AP3564_04115 eb4639322afbdde9843118897ee793c8 74 Hamap MF_01863 UPF0741 protein . 1 74 30.277 T 13-10-2018 IPR020880 Protein of unknown function UPF0741 AP3564_07635 40c0fc47354203d94fa5ae2be32fb450 327 Gene3D G3DSA:1.10.260.150 52 326 2.0E-92 T 13-10-2018 AP3564_07635 40c0fc47354203d94fa5ae2be32fb450 327 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 87 235 4.2E-51 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain AP3564_07635 40c0fc47354203d94fa5ae2be32fb450 327 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 87 236 1.2E-47 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain AP3564_09760 11bb727073e5802fe712a6a8914ebefe 105 Pfam PF00085 Thioredoxin 14 100 7.4E-15 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 AP3564_09760 11bb727073e5802fe712a6a8914ebefe 105 Gene3D G3DSA:3.40.30.10 1 102 1.9E-22 T 13-10-2018 AP3564_09760 11bb727073e5802fe712a6a8914ebefe 105 SUPERFAMILY SSF52833 8 101 9.18E-25 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AP3564_02380 9fbea4109a60937ce5de347bd58f3938 357 Pfam PF06081 Aromatic acid exporter family member 1 1 142 3.6E-43 T 13-10-2018 IPR010343 Aromatic acid exporter family member 1 AP3564_10325 41c164166e3904444d8a453930320941 252 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 73 236 1.7E-22 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AP3564_10325 41c164166e3904444d8a453930320941 252 Gene3D G3DSA:1.10.3720.10 48 246 1.3E-29 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_10325 41c164166e3904444d8a453930320941 252 SUPERFAMILY SSF161098 51 233 2.88E-30 T 13-10-2018 IPR035906 MetI-like superfamily AP3564_05060 ed08263cd654bd6f0c2f02b13b20c4b8 146 Pfam PF03885 Protein of unknown function (DUF327) 16 145 1.4E-37 T 13-10-2018 IPR005585 Protein of unknown function DUF327 AP3564_05060 ed08263cd654bd6f0c2f02b13b20c4b8 146 Gene3D G3DSA:1.20.120.490 25 146 6.3E-37 T 13-10-2018 IPR024042 TM1646-like domain superfamily AP3564_05060 ed08263cd654bd6f0c2f02b13b20c4b8 146 SUPERFAMILY SSF158397 28 146 1.01E-32 T 13-10-2018 IPR024042 TM1646-like domain superfamily AP3564_18600 622a28e3dc7e4c1ce3d230168418728b 222 Pfam PF07423 Protein of unknown function (DUF1510) 4 221 1.0E-75 T 13-10-2018 IPR009988 Protein of unknown function DUF1510 AP3564_08265 6d173372d104d105544dd6eecd325811 126 Pfam PF13556 PucR C-terminal helix-turn-helix domain 56 114 2.0E-21 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain AP3564_08265 6d173372d104d105544dd6eecd325811 126 SUPERFAMILY SSF46689 54 91 7.62E-5 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_08265 6d173372d104d105544dd6eecd325811 126 Gene3D G3DSA:1.10.10.2840 4 118 1.4E-16 T 13-10-2018 AP3564_18160 a15da255e97dec67e740d9585192b854 181 Pfam PF02618 YceG-like family 119 180 1.5E-8 T 13-10-2018 IPR003770 Endolytic murein transglycosylase AP3564_18160 a15da255e97dec67e740d9585192b854 181 Gene3D G3DSA:1.10.8.1150 114 181 2.8E-14 T 13-10-2018 AP3564_01345 6f324e07ad02c9915d69867b0b208053 158 SUPERFAMILY SSF55729 1 125 6.87E-23 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase AP3564_01345 6f324e07ad02c9915d69867b0b208053 158 Pfam PF00583 Acetyltransferase (GNAT) family 37 116 8.8E-14 T 13-10-2018 IPR000182 GNAT domain AP3564_01345 6f324e07ad02c9915d69867b0b208053 158 Gene3D G3DSA:3.40.630.30 2 136 4.4E-33 T 13-10-2018 AP3564_10360 740b49310cbaa922608c5f7ce8bb3f9d 656 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 136 571 2.0E-97 T 13-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit AP3564_10360 740b49310cbaa922608c5f7ce8bb3f9d 656 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 37 639 8.7E-232 T 13-10-2018 IPR011853 TRAP C4-dicarboxylate transport system permease, fused DctM-DctQ AP3564_04770 4876418ce13b7c1b5f513582fb7ba084 308 Pfam PF09991 Predicted membrane protein (DUF2232) 15 299 1.5E-70 T 13-10-2018 IPR018710 Protein of unknown function DUF2232 AP3564_10920 01741e859be60489e1fb3c8a984d9e3a 653 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 32 646 2.1E-203 T 13-10-2018 IPR011853 TRAP C4-dicarboxylate transport system permease, fused DctM-DctQ AP3564_10920 01741e859be60489e1fb3c8a984d9e3a 653 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 130 564 4.0E-93 T 13-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit AP3564_01765 ddaf8e7b444463e122b748b48a73764e 1085 TIGRFAM TIGR03929 T7_esaA_Nterm: type VII secretion protein EsaA 11 200 3.8E-70 T 13-10-2018 IPR023838 Type VII secretion system EsaA GO:0016021 AP3564_16780 bb1fe5e664203335cb3a939539a89190 401 Pfam PF07670 Nucleoside recognition 39 131 3.4E-6 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 AP3564_16780 bb1fe5e664203335cb3a939539a89190 401 TIGRFAM TIGR02871 spore_ylbJ: sporulation integral membrane protein YlbJ 5 384 1.0E-125 T 13-10-2018 IPR014226 Sporulation integral membrane protein YlbJ AP3564_07570 3733910471324ee2b35d5b00dd2a08dd 458 Pfam PF13425 O-antigen ligase like membrane protein 10 452 5.9E-104 T 13-10-2018 AP3564_03215 e4f9aec49909d94a2566c2f219f47f56 239 Pfam PF03591 AzlC protein 23 158 1.5E-41 T 13-10-2018 IPR011606 Branched-chain amino acid transport, permease AP3564_01695 88d3574401e61530ecaf4005225922cc 305 Pfam PF14436 Bacterial EndoU nuclease 208 296 2.0E-6 T 13-10-2018 IPR029501 Bacterial EndoU nuclease AP3564_17610 e7d95f8402fe99579f2f5bfc16794462 80 Pfam PF10827 Protein of unknown function (DUF2552) 2 79 1.0E-40 T 13-10-2018 IPR020157 Uncharacterised protein family YqkC AP3564_17610 e7d95f8402fe99579f2f5bfc16794462 80 ProDom PD058987 CYTOSOLIC YQKC 21 80 6.0E-18 T 13-10-2018 IPR020157 Uncharacterised protein family YqkC AP3564_02290 af0b79cc9fb3a10ef8aeff6ba6e2a0f3 163 Pfam PF07681 DoxX 14 110 4.7E-10 T 13-10-2018 IPR032808 DoxX family AP3564_15310 3ec59a2a7646700acbf3855726aa5eb2 278 Pfam PF00294 pfkB family carbohydrate kinase 14 264 6.7E-35 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB AP3564_15310 3ec59a2a7646700acbf3855726aa5eb2 278 SUPERFAMILY SSF53613 1 267 2.34E-45 T 13-10-2018 IPR029056 Ribokinase-like AP3564_15310 3ec59a2a7646700acbf3855726aa5eb2 278 Gene3D G3DSA:3.40.1190.20 1 274 2.7E-44 T 13-10-2018 IPR029056 Ribokinase-like AP3564_12040 c40eb80c965f4722d8327f7ebea122e2 265 Pfam PF02361 Cobalt transport protein 7 219 1.7E-29 T 13-10-2018 IPR003339 ABC/ECF transporter, transmembrane component AP3564_12620 c6870336be99c2710d761aa23d8142f5 58 Pfam PF01548 Transposase 11 56 1.7E-7 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_09730 8d8992eac918749c872c2c7e3719c356 92 Pfam PF14165 YtzH-like protein 3 88 6.2E-33 T 13-10-2018 IPR025547 YtzH-like protein AP3564_02080 e860f41c004c0eeac37fdfc63c99cc88 188 Gene3D G3DSA:1.10.1660.10 8 75 6.7E-8 T 13-10-2018 AP3564_16160 79ae2d920bc03f3abd46f6ade7d9af9e 142 Pfam PF03748 Flagellar basal body-associated protein FliL 51 142 2.3E-16 T 13-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 AP3564_10090 bf5459be3628188e19152dfd4186ca36 316 Gene3D G3DSA:3.40.50.2300 40 282 2.6E-77 T 13-10-2018 AP3564_10090 bf5459be3628188e19152dfd4186ca36 316 Pfam PF02608 ABC transporter substrate-binding protein PnrA-like 28 314 9.6E-60 T 13-10-2018 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 AP3564_10090 bf5459be3628188e19152dfd4186ca36 316 Gene3D G3DSA:3.40.50.2300 132 299 2.6E-77 T 13-10-2018 AP3564_10090 bf5459be3628188e19152dfd4186ca36 316 SUPERFAMILY SSF53822 25 228 8.64E-23 T 13-10-2018 IPR028082 Periplasmic binding protein-like I AP3564_12050 b776fc28c791bb4ca3c5a4c946e7f294 300 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 284 6.4E-47 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AP3564_12050 b776fc28c791bb4ca3c5a4c946e7f294 300 TIGRFAM TIGR03409 urea_trans_UrtB: urea ABC transporter, permease protein UrtB 6 297 1.7E-123 T 13-10-2018 IPR017779 ABC transporter, urea permease protein UrtB, bacterial-type AP3564_12625 18656bdf7e36c70e6d08fe242b17f22c 111 Pfam PF01548 Transposase 15 111 4.2E-22 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AP3564_10290 6470d517d00c2993439e7cccd6744121 85 Pfam PF14069 Stage VI sporulation protein F 5 76 3.4E-27 T 13-10-2018 IPR025942 Stage VI sporulation protein F AP3564_14680 dddc07081ff3517145fab51b6773e4a8 247 Pfam PF14256 YwiC-like protein 9 132 1.1E-40 T 13-10-2018 IPR025576 YwiC-like protein AP3564_02360 26918c17879e6a9b611bd65119a93f9a 73 Pfam PF14182 YgaB-like protein 1 64 1.7E-19 T 13-10-2018 IPR025572 YgaB-like protein AP3564_18400 b8236dc054c535f19fced15b82118ad8 330 Hamap MF_01562 UPF0365 protein . 3 323 49.109 T 13-10-2018 IPR022853 Uncharacterised protein family YdfA-immunity AP3564_18400 b8236dc054c535f19fced15b82118ad8 330 Pfam PF12127 SigmaW regulon antibacterial 11 319 1.5E-165 T 13-10-2018 IPR022853 Uncharacterised protein family YdfA-immunity AP3564_08065 159ee510b466232a3e71eb485bbe4e61 142 Pfam PF05025 RbsD / FucU transport protein family 3 141 4.3E-42 T 13-10-2018 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 AP3564_08065 159ee510b466232a3e71eb485bbe4e61 142 SUPERFAMILY SSF102546 1 141 3.14E-46 T 13-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 AP3564_08065 159ee510b466232a3e71eb485bbe4e61 142 Gene3D G3DSA:3.40.1650.10 1 142 1.3E-54 T 13-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 AP3564_17440 4dc5621bc47f6a57818c7d4767d9d41a 254 Hamap MF_01805 Segregation and condensation protein A [scpA]. 2 246 26.622 T 13-10-2018 IPR003768 Segregation and condensation protein A AP3564_17440 4dc5621bc47f6a57818c7d4767d9d41a 254 Pfam PF02616 Segregation and condensation protein ScpA 19 243 1.3E-59 T 13-10-2018 IPR003768 Segregation and condensation protein A AP3564_16655 c8499501b54acb9a71bd3b527ee1ef7f 239 Gene3D G3DSA:3.30.70.1880 83 238 2.6E-15 T 13-10-2018 AP3564_16655 c8499501b54acb9a71bd3b527ee1ef7f 239 Pfam PF05949 Bacterial protein of unknown function (DUF881) 85 229 3.9E-27 T 13-10-2018 IPR010273 Protein of unknown function DUF881 AP3564_11805 9ec9f9e9df028d5db100e2f439a89e87 72 Pfam PF07872 Protein of unknown function (DUF1659) 6 50 9.1E-16 T 13-10-2018 IPR012454 Protein of unknown function DUF1659 AP3564_12135 46ce675b85eba62226ef12055978e2af 122 Pfam PF10057 Uncharacterized conserved protein (DUF2294) 11 117 4.0E-8 T 13-10-2018 IPR018745 Domain of unknown function DUF2294 AP3564_02950 021bb1b466341efc06a4a6fedd8e7490 330 Pfam PF02653 Branched-chain amino acid transport system / permease component 29 288 2.9E-37 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AP3564_11340 c62e01c7743d66a9d6b57250767241fb 308 Gene3D G3DSA:3.20.20.140 1 308 1.3E-107 T 13-10-2018 AP3564_11340 c62e01c7743d66a9d6b57250767241fb 308 SUPERFAMILY SSF51556 1 307 1.02E-73 T 13-10-2018 IPR032466 Metal-dependent hydrolase AP3564_11340 c62e01c7743d66a9d6b57250767241fb 308 Pfam PF01244 Membrane dipeptidase (Peptidase family M19) 2 307 1.7E-95 T 13-10-2018 IPR008257 Peptidase M19 GO:0006508|GO:0016805 MetaCyc: PWY-7533|Reactome: R-HSA-2142691|Reactome: R-HSA-5423646 AP3564_06090 0beabbe9354f95e6028b9dccdf3281b6 320 Pfam PF07070 SpoOM protein 2 197 2.3E-50 T 13-10-2018 IPR009776 Sporulation stage 0, protein M AP3564_15100 4f4ba4494e6e7d44e2d75af5bceb4222 121 Gene3D G3DSA:3.90.20.10 12 121 4.8E-14 T 13-10-2018 AP3564_13630 f7efa2c5e06e3479d1c1a08266a72202 343 Pfam PF00487 Fatty acid desaturase 52 289 2.1E-36 T 13-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 AP3564_12770 974e6c4454f8eca437569c341a370673 88 Pfam PF10752 Protein of unknown function (DUF2533) 3 85 6.9E-39 T 13-10-2018 IPR019688 Protein of unknown function DUF2533 AP3564_19180 79bce95e3d3e7424868b36011f5cb879 136 Pfam PF03994 Domain of Unknown Function (DUF350) 80 134 4.7E-15 T 13-10-2018 IPR007140 Protein of unknown function DUF350 AP3564_19180 79bce95e3d3e7424868b36011f5cb879 136 Pfam PF03994 Domain of Unknown Function (DUF350) 20 68 1.6E-11 T 13-10-2018 IPR007140 Protein of unknown function DUF350 AP3564_14560 27e8ebd6b9339e62b0a3fca2d318ead1 357 Pfam PF13271 Domain of unknown function (DUF4062) 1 60 1.2E-6 T 13-10-2018 IPR025139 Domain of unknown function DUF4062 AP3564_03155 34e3ec4c1b7d1e2a87d4bdf1aebdfbe2 168 Gene3D G3DSA:3.30.70.3430 1 164 2.3E-53 T 13-10-2018 AP3564_03155 34e3ec4c1b7d1e2a87d4bdf1aebdfbe2 168 SUPERFAMILY SSF54909 67 145 3.0E-15 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel AP3564_03155 34e3ec4c1b7d1e2a87d4bdf1aebdfbe2 168 Pfam PF03992 Antibiotic biosynthesis monooxygenase 68 137 2.0E-8 T 13-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain AP3564_18590 d2f2045806f74bb2b3f3420951a88000 77 Pfam PF14143 YrhC-like protein 4 74 2.0E-22 T 13-10-2018 IPR025418 YrhC-like protein AP3564_18590 d2f2045806f74bb2b3f3420951a88000 77 ProDom PD057834 YRHC TRANSMEMBRANE MEMBRANE 1 76 7.0E-10 T 13-10-2018 IPR025418 YrhC-like protein AP3564_18350 854bfca67cc6d59b0d621345879d2f05 46 Pfam PF14006 YqzL-like protein 3 45 1.6E-17 T 13-10-2018 IPR025617 YqzL-like protein AP3564_05885 64008bcefddb70a8ed41f3686586f538 265 Pfam PF02361 Cobalt transport protein 14 236 4.0E-57 T 13-10-2018 IPR003339 ABC/ECF transporter, transmembrane component AP3564_05885 64008bcefddb70a8ed41f3686586f538 265 Hamap MF_01461 Energy-coupling factor transporter transmembrane protein EcfT [ecfT]. 2 265 37.636 T 13-10-2018 IPR024919 ECF transporter transmembrane protein EcfT GO:0016021|GO:0022857|GO:0055085 AP3564_08185 2697b52c274978792d69475b1013047c 421 Pfam PF12698 ABC-2 family transporter protein 21 412 1.1E-30 T 13-10-2018 AP3564_18745 57e6610c95f46fbe386a3741f8dcf578 97 Pfam PF13797 Post-transcriptional regulator 7 87 1.8E-27 T 13-10-2018 IPR025716 Post-transcriptional regulator AP3564_11620 45693baa68a250fc36230b47a169c9df 239 Pfam PF02754 Cysteine-rich domain 132 215 6.3E-17 T 13-10-2018 IPR004017 Cysteine-rich domain AP3564_11620 45693baa68a250fc36230b47a169c9df 239 Pfam PF02754 Cysteine-rich domain 3 84 7.7E-17 T 13-10-2018 IPR004017 Cysteine-rich domain AP3564_11620 45693baa68a250fc36230b47a169c9df 239 Hamap MF_02105 Lactate utilization protein A [lutA]. 1 238 63.925 T 13-10-2018 IPR022822 Lactate utilization protein A GO:0006089 AP3564_01510 e88bfa8b00576ef3b8e6c50103328c21 123 Pfam PF09350 Domain of unknown function (DUF1992) 7 73 2.4E-21 T 13-10-2018 IPR018961 DnaJ homologue, subfamily C, member 28, conserved domain AP3564_02820 c07661b18eac30cf9e441a2a5f95faea 205 Pfam PF09335 SNARE associated Golgi protein 30 160 2.1E-21 T 13-10-2018 IPR032816 SNARE associated Golgi protein AP3564_09610 01cfb7cf1f8d2f9abe92c88d6fbf05af 87 Pfam PF10732 Protein of unknown function (DUF2524) 1 84 2.2E-35 T 13-10-2018 IPR019668 Uncharacterised protein family YtzC AP3564_07065 fa01de10ae888438a8bdb24df622649b 197 Pfam PF01944 Stage II sporulation protein M 38 194 2.9E-16 T 13-10-2018 IPR002798 Stage II sporulation protein M-like AP3564_00685 89ce34a52f60c5e8d6abd42cd7ff74ba 154 Gene3D G3DSA:3.30.450.40 7 125 4.4E-6 T 13-10-2018 IPR029016 GAF-like domain superfamily AP3564_09855 7970d7334890c73d58cc1e913722349c 210 Pfam PF10737 Spore germination protein GerPC 26 198 5.2E-52 T 13-10-2018 IPR019673 Spore germination protein GerPC AP3564_19410 1bd6c914cacbf66fe704656b6e5addfd 112 Pfam PF14034 Sporulation protein YtrH 9 107 4.8E-39 T 13-10-2018 IPR025689 Sporulation protein YtrH AP3564_09575 1e21a18cf22bfa47e7e678cdcbe2131d 175 SUPERFAMILY SSF51161 2 169 5.96E-49 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily AP3564_09575 1e21a18cf22bfa47e7e678cdcbe2131d 175 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 11 45 3.5E-5 T 13-10-2018 IPR001451 Hexapeptide repeat AP3564_09575 1e21a18cf22bfa47e7e678cdcbe2131d 175 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 88 121 6.0E-6 T 13-10-2018 IPR001451 Hexapeptide repeat AP3564_09575 1e21a18cf22bfa47e7e678cdcbe2131d 175 Gene3D G3DSA:2.160.10.10 1 174 3.4E-74 T 13-10-2018 AP3564_07215 7925c29d9bcce03410758a0842bb1350 409 Pfam PF01566 Natural resistance-associated macrophage protein 56 376 1.1E-21 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 AP3564_07925 fe8ef570b9cbf387c3ddc4923c9066ef 136 Pfam PF02653 Branched-chain amino acid transport system / permease component 1 125 2.8E-23 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AP3564_14895 85bc47834cf32086a9332c768408a07b 244 Pfam PF09922 Cell wall-active antibiotics response 4TMS YvqF 128 241 7.0E-40 T 13-10-2018 IPR024425 Cell wall-active antibiotics response 4TMS YvqF AP3564_14895 85bc47834cf32086a9332c768408a07b 244 PIRSF PIRSF031509 4 244 1.2E-60 T 13-10-2018 IPR016975 Cell wall-active antibiotic response protein GO:0016021 AP3564_12715 102f31f53a73b6acb9bf2f2a9561ceee 114 Pfam PF14036 YlaH-like protein 31 104 4.8E-31 T 13-10-2018 IPR025620 YlaH-like protein AP3564_04925 62dee2685b250ac3627f139a14362da7 315 Pfam PF14175 YaaC-like Protein 8 304 6.5E-84 T 13-10-2018 IPR026988 YaaC-like protein AP3564_15675 e770931456f1dcd78830e55d434b41b1 159 Pfam PF04892 VanZ like family 13 150 3.2E-22 T 13-10-2018 IPR006976 VanZ-like AP3564_18515 c80d5b7fd91e9d7aa0d7089715597151 43 Pfam PF14141 YqzM-like protein 2 42 2.7E-22 T 13-10-2018 IPR025416 YqzM-like protein AP3564_13385 489cdad047f65da9d541dedb5e8cc2ce 214 Pfam PF13437 HlyD family secretion protein 91 204 4.8E-15 T 13-10-2018 AP3564_13385 489cdad047f65da9d541dedb5e8cc2ce 214 Gene3D G3DSA:2.40.30.170 102 214 2.2E-31 T 13-10-2018 AP3564_03605 8df2f7f425520305819303ec66bebc4d 166 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 31 159 1.9E-28 T 13-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ AP3564_14800 bc3e7170b10da013976e1b2a23acd380 236 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 9 214 1.9E-63 T 13-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 AP3564_18230 8fd6b17d685f7177016728ea38efdc80 100 ProDom PD067165 YQFZ MEMBRANE WALL BH1402 TRANSMEMBRANE OB1935 CELL 1 98 3.0E-16 T 13-10-2018 IPR020506 Uncharacterised protein family YqfZ AP3564_06505 1bd4379f656c578f1663d6bb9fd3bb2a 169 SUPERFAMILY SSF54427 51 157 1.68E-6 T 13-10-2018 IPR032710 NTF2-like domain superfamily AP3564_00705 aa4cb8f5e78379f34cefe1e73c9361f7 401 Pfam PF01882 Protein of unknown function DUF58 201 274 9.3E-19 T 13-10-2018 IPR002881 Domain of unknown function DUF58 AP3564_01550 9ea5a53c7deaf44c60c90808d39c7dbe 128 Pfam PF02566 OsmC-like protein 28 122 2.1E-22 T 13-10-2018 IPR003718 OsmC/Ohr family AP3564_01550 9ea5a53c7deaf44c60c90808d39c7dbe 128 Gene3D G3DSA:3.30.300.20 5 128 5.0E-28 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta AP3564_01550 9ea5a53c7deaf44c60c90808d39c7dbe 128 SUPERFAMILY SSF82784 17 126 4.19E-26 T 13-10-2018 IPR036102 OsmC/Ohr superfamily AP3564_16950 795c52a1762631af2596a126c1e530a9 314 Pfam PF10720 Protein of unknown function (DUF2515) 10 308 1.7E-116 T 13-10-2018 IPR019658 Protein of unknown function DUF2515 AP3564_19465 ee1c12b083b9b8b2c5939a7a549f0d82 485 SUPERFAMILY SSF53649 2 482 1.01E-42 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 AP3564_19465 ee1c12b083b9b8b2c5939a7a549f0d82 485 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 6 339 2.4E-16 T 13-10-2018 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 AP3564_12840 010adf8320d2ce010f41d3ab5ffc9207 83 Pfam PF10751 Protein of unknown function (DUF2535) 1 83 1.1E-35 T 13-10-2018 IPR019687 Protein of unknown function DUF2535 AP3564_10685 e6f2c524123c121c6ea21ad8a7c8b4bd 235 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 9 214 5.6E-66 T 13-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 AP3564_09710 fb12d4611fd45dd904de32fafb92bac0 129 Pfam PF03788 LrgA family 18 108 2.7E-26 T 13-10-2018 IPR005538 LrgA/CidA family GO:0016021 AP3564_11600 0038075b0378622775e7be3ae164b2ad 451 Pfam PF02386 Cation transport protein 42 432 5.9E-57 T 13-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 AP3564_16730 177e82ad9301095cc86e3b6c109c1432 127 Pfam PF11877 Protein of unknown function (DUF3397) 8 110 1.5E-15 T 13-10-2018 IPR024515 Protein of unknown function DUF3397 AP3564_10245 1d4656dc8248320d17f50f91aff81b64 128 Pfam PF14153 Spore coat protein CotO 52 127 4.7E-21 T 13-10-2018 IPR025439 Spore coat protein CotO AP3564_17880 3ca861a58a804f4177fbe062c9821b1e 192 TIGRFAM TIGR02830 spore_III_AG: stage III sporulation protein AG 7 192 3.3E-67 T 13-10-2018 IPR014195 Sporulation stage III, protein AG AP3564_09840 80da23681bf452eff9cecd896a467ff3 72 Pfam PF10676 Spore germination protein gerPA/gerPF 1 71 9.1E-28 T 13-10-2018 IPR019618 Spore germination protein GerPA/GerPF AP3564_07320 51aa87a71494401c3939c6be7c123814 161 Pfam PF01944 Stage II sporulation protein M 2 154 3.2E-25 T 13-10-2018 IPR002798 Stage II sporulation protein M-like AP3564_14130 ad67a4363046eee2b8256e972b5a92b3 61 Gene3D G3DSA:3.90.20.10 2 60 1.4E-8 T 13-10-2018 AP3564_06515 56c63b101d19d0c32936e4c658aa81fe 279 ProDom PD113106 YVBI TRANSMEMBRANE MEMBRANE YEBC YBEC 1 184 1.0E-5 T 13-10-2018 AP3564_01450 20c8bbb5a0545cff9ddafc13da0f902b 177 Pfam PF14026 Protein of unknown function (DUF4242) 98 173 1.5E-23 T 13-10-2018 IPR025336 Protein of unknown function DUF4242 AP3564_17240 c376b008ba2cdf67867421a513f42303 231 ProDom PD119161 YPHF BH1644 PROTEINS PRECURSOR ORF1 RBL05088 SIGNAL SIMILAR 12 229 1.0E-74 T 13-10-2018 AP3564_11900 783c9ef75ea4008f8a8c7767e159e50c 158 Pfam PF14177 YkyB-like protein 15 154 2.0E-62 T 13-10-2018 IPR025552 YkyB-like protein AP3564_03255 4c7f036cbaf29035b3765314a359d1a6 147 Pfam PF12732 YtxH-like protein 13 93 6.0E-21 T 13-10-2018 IPR024623 Uncharacterised protein family YtxH AP3564_09000 fb1318598e4846e95e13a647e5bdcd39 102 Gene3D G3DSA:3.30.1980.10 1 100 1.3E-25 T 13-10-2018 IPR036493 Hypothetical protein YunC superfamily AP3564_09000 fb1318598e4846e95e13a647e5bdcd39 102 SUPERFAMILY SSF102891 1 99 4.58E-33 T 13-10-2018 IPR036493 Hypothetical protein YunC superfamily AP3564_09000 fb1318598e4846e95e13a647e5bdcd39 102 Pfam PF08827 Domain of unknown function (DUF1805) 37 99 2.6E-26 T 13-10-2018 IPR014931 Protein of unknown function DUF1805 AP3564_12890 92303a494aca46c742d2404ca9179c19 192 Pfam PF09911 Uncharacterized protein conserved in bacteria (DUF2140) 2 187 2.1E-49 T 13-10-2018 IPR018672 Protein of unknown function DUF2140 AP3564_01885 1ace979d19fc9b82a3b4afcaa505e908 144 SUPERFAMILY SSF53098 99 141 1.84E-7 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AP3564_01885 1ace979d19fc9b82a3b4afcaa505e908 144 Pfam PF13276 HTH-like domain 26 82 2.9E-15 T 13-10-2018 IPR025948 HTH-like domain AP3564_01875 9f350273c1b3d88cbb607719166528a2 201 Pfam PF01609 Transposase DDE domain 84 198 3.3E-13 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AP3564_01925 1e15c6867cafb88f8308d2754bafeee7 214 Pfam PF13346 ABC-2 family transporter protein 3 209 2.6E-29 T 13-10-2018 IPR025699 ABC-2 membrane transporter-like AP3564_14675 c02d2702617c14d94ea1f34d86f8fb4b 70 Pfam PF13217 Protein of unknown function (DUF4025) 27 56 2.1E-11 T 13-10-2018 IPR025100 Protein of unknown function DUF4025 AP3564_10535 1de6252d74c4b320bb162008766a61fa 153 Pfam PF15565 Immunity protein 30 13 112 7.1E-28 T 13-10-2018 IPR029084 Immunity protein 30 AP3564_11380 060277abf7af5410ab9d72c291414ca5 87 SUPERFAMILY SSF46689 4 80 2.33E-6 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AP3564_09170 d9847ce05ebbf8515f01e33fcf810c83 449 Pfam PF02447 GntP family permease 8 377 3.4E-8 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AP3564_17930 bb363887e24f61ab8a3345541b514dcf 164 Pfam PF11085 Conserved membrane protein YqhR 8 163 6.8E-57 T 13-10-2018 IPR024563 Uncharacterised protein family YqhR AP3564_17930 bb363887e24f61ab8a3345541b514dcf 164 ProDom PD101610 MEMBRANE YQHR BH2802 TRANSMEMBRANE IG 25 161 2.0E-28 T 13-10-2018 IPR024563 Uncharacterised protein family YqhR AP3564_07445 ec89f41176bc9cbb6cd40fb2e2401a24 79 Pfam PF01610 Transposase 9 64 8.0E-11 T 13-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain AP3564_01815 22cdb54c1364f08baa71f53cecd8a9cb 134 PIRSF PIRSF033725 1 134 1.1E-24 T 13-10-2018 IPR017020 Uncharacterised conserved protein UCP033725 AP3564_01380 1dc604d349c18707a9c0f71ac932443d 356 SUPERFAMILY SSF50998 70 342 3.61E-8 T 13-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily AP3564_14370 cd9b42f442dad2326a3ef96dc665457d 208 Pfam PF01810 LysE type translocator 15 202 1.0E-24 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AP3564_05640 ed1d71f55dee048c8561e6a67c674dfd 171 Pfam PF05991 YacP-like NYN domain 4 167 1.2E-56 T 13-10-2018 IPR010298 Protein of unknown function DUF901 AP3564_17685 279f1a889850578f48197b7f86c23fc6 393 Pfam PF02653 Branched-chain amino acid transport system / permease component 55 382 5.8E-41 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AP3564_17420 03a2d1e3beb587b4e81192fd7d9ea727 176 Pfam PF07670 Nucleoside recognition 47 146 1.7E-5 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 AP3564_11700 ca38c78d5aa0b92f49d08086ed8311c9 264 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 186 203 - T 13-10-2018 IPR000540 Flagellar motor protein MotA, conserved site AP3564_11700 ca38c78d5aa0b92f49d08086ed8311c9 264 Pfam PF01618 MotA/TolQ/ExbB proton channel family 102 217 1.5E-27 T 13-10-2018 IPR002898 MotA/TolQ/ExbB proton channel AP3564_01370 11722d899b7464152d22f716d33087fe 356 SUPERFAMILY SSF50969 108 344 6.2E-6 T 13-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like AP3564_03980 71773ea284d25a4ea0f498a12901a71b 143 Gene3D G3DSA:3.40.630.30 2 134 2.9E-6 T 13-10-2018 AP3564_18045 562c1f9c31fbc12f020f1a34975d44c9 59 Pfam PF14038 YqzE-like protein 2 54 3.5E-26 T 13-10-2018 IPR025622 YqzE-like protein AP3564_15250 7e6861858826f2fe3c5d129f3ba88a14 248 Pfam PF01844 HNH endonuclease 174 229 2.7E-8 T 13-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 AP3564_11655 2f8753a23add7898794bbfb198699e72 208 Pfam PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein 9 198 9.7E-58 T 13-10-2018 IPR018770 5-bromo-4-chloroindolyl phosphate hydrolysis protein AP3564_12600 f4adff190bf1f9cf0882b04cd6d865e8 124 SUPERFAMILY SSF52833 61 122 1.71E-5 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AP3564_11260 d58abe3c3b8ce6a6f4c6a3d4cf205572 76 Gene3D G3DSA:3.10.20.520 3 61 4.4E-6 T 13-10-2018 IPR038693 Phenylacetyl-CoA epoxidase, subunit B AP3564_09235 c124258c536fe282b08fffcda5a93db4 112 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 6 107 3.4E-33 T 13-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like AP3564_01255 ee6ee070de9594b94cd93f7aa1653f3c 256 Pfam PF06738 Putative threonine/serine exporter 19 255 1.7E-81 T 13-10-2018 IPR010619 Putative threonine/serine exporter AP3564_17095 dca4b5b149af2657952f0b5772fd4ffe 147 Pfam PF10673 Protein of unknown function (DUF2487) 9 144 1.3E-47 T 13-10-2018 IPR019615 Protein of unknown function DUF2487 AP3564_07150 70ad01cfc561d764d9c747725d7c1259 330 Pfam PF02653 Branched-chain amino acid transport system / permease component 50 317 2.1E-50 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AP3564_19200 e2c95156ff8a3089f2572bda8e8c6f57 182 Pfam PF02674 Colicin V production protein 2 164 3.3E-35 T 13-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 AP3564_01260 f8ade953d0c31751540211eb14d82175 141 Pfam PF12821 Threonine/Serine exporter, ThrE 4 131 9.1E-42 T 13-10-2018 IPR024528 Threonine/Serine exporter, ThrE AP3564_11810 46224aa358f7e8c469f8501f84cacad7 72 Pfam PF11148 Protein of unknown function (DUF2922) 3 68 6.2E-26 T 13-10-2018 IPR021321 Protein of unknown function DUF2922 AP3564_05015 d634d0ec31592c7225703ed6e9f56bab 72 Pfam PF10704 Protein of unknown function (DUF2508) 1 70 3.2E-23 T 13-10-2018 IPR019644 Protein of unknown function DUF2508 AP3564_03855 fed70a10374728d4216e7296f712c569 145 Pfam PF04892 VanZ like family 14 121 4.5E-14 T 13-10-2018 IPR006976 VanZ-like AP3564_08345 7e50815b6bd41bf0347c2465b9bc2192 75 Pfam PF08388 Group II intron, maturase-specific domain 2 58 4.3E-9 T 13-10-2018 IPR013597 Group II intron, maturase-specific AP3564_10675 e6b6660213a2635c76664c1a6949c84a 66 Pfam PF09851 Short C-terminal domain 41 66 9.2E-7 T 13-10-2018 IPR018649 SHOCT domain AP3564_18655 f706da26ead8f110bbb15f4c5f9845f0 353 Pfam PF01594 AI-2E family transporter 20 345 5.7E-74 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like