locus-tag class description APP_00010 PF11638 DnaA N-terminal domain APP_00010 PF00308 Bacterial dnaA protein APP_00010 PF08299 Bacterial dnaA protein helix-turn-helix APP_00030 PF02768 DNA polymerase III beta subunit, C-terminal domain APP_00030 PF00712 DNA polymerase III beta subunit, N-terminal domain APP_00030 PF02767 DNA polymerase III beta subunit, central domain APP_00050 PF02463 RecF/RecN/SMC N terminal domain APP_00060 PF01751 Toprim domain APP_00060 PF00986 DNA gyrase B subunit, carboxyl terminus APP_00060 PF00204 DNA gyrase B APP_00060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APP_00070 PF00521 DNA gyrase/topoisomerase IV, subunit A APP_00070 PF03989 DNA gyrase C-terminal domain, beta-propeller APP_00080 PF00072 Response regulator receiver domain APP_00080 PF01966 HD domain APP_00090 PF14175 YaaC-like Protein APP_00100 PF00571 CBS domain APP_00100 PF00478 IMP dehydrogenase / GMP reductase domain APP_00110 PF07943 Penicillin-binding protein 5, C-terminal domain APP_00110 PF00768 D-alanyl-D-alanine carboxypeptidase APP_00120 PF01680 SOR/SNZ family APP_00130 PF01174 SNO glutamine amidotransferase family APP_00140 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APP_00140 PF02403 Seryl-tRNA synthetase N-terminal domain APP_00150 PF01266 FAD dependent oxidoreductase APP_00160 PF00704 Glycosyl hydrolases family 18 APP_00160 PF01476 LysM domain APP_00170 PF14437 MafB19-like deaminase APP_00180 PF12169 DNA polymerase III subunits gamma and tau domain III APP_00190 PF02575 YbaB/EbfC DNA-binding family APP_00200 PF02132 RecR protein APP_00200 PF13662 Toprim domain APP_00210 PF10704 Protein of unknown function (DUF2508) APP_00220 PF07441 SigmaK-factor processing regulatory protein BofA APP_00240 PF10764 Inhibitor of sigma-G Gin APP_00250 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain APP_00250 PF01276 Orn/Lys/Arg decarboxylase, major domain APP_00260 PF02223 Thymidylate kinase APP_00270 PF06153 Cyclic-di-AMP receptor APP_00280 PF03885 Protein of unknown function (DUF327) APP_00290 PF09115 DNA polymerase III, delta subunit, C terminal APP_00300 PF04468 PSP1 C-terminal conserved region APP_00310 PF06156 Initiation control protein YabA APP_00320 PF05175 Methyltransferase small domain APP_00330 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APP_00340 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin APP_00340 PF18277 AbrB C-terminal domain APP_00350 PF08264 Anticodon-binding domain of tRNA APP_00350 PF09334 tRNA synthetases class I (M) APP_00350 PF01588 Putative tRNA binding domain APP_00360 PF01026 TatD related DNase APP_00370 PF03990 G5-linked-Ubiquitin-like domain APP_00370 PF06725 3D domain APP_00370 PF07501 G5 domain APP_00380 PF13331 Domain of unknown function (DUF4093) APP_00380 PF13662 Toprim domain APP_00390 PF00398 Ribosomal RNA adenine dimethylase APP_00400 PF05582 YabG peptidase U57 APP_00410 PF06257 Biofilm formation stimulator VEG APP_00420 PF00269 Small, acid-soluble spore proteins, alpha/beta type APP_00430 PF00288 GHMP kinases N terminal domain APP_00430 PF08544 GHMP kinases C terminal APP_00440 PF09182 Bacterial purine repressor, N-terminal APP_00440 PF00156 Phosphoribosyl transferase domain APP_00450 PF01042 Endoribonuclease L-PSP APP_00460 PF04026 SpoVG APP_00470 PF00132 Bacterial transferase hexapeptide (six repeats) APP_00470 PF00483 Nucleotidyl transferase APP_00480 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase APP_00480 PF14572 Phosphoribosyl synthetase-associated domain APP_00490 PF14693 Ribosomal protein TL5, C-terminal domain APP_00490 PF01386 Ribosomal L25p family APP_00500 PF01195 Peptidyl-tRNA hydrolase APP_00510 PF10955 Protein of unknown function (DUF2757) APP_00520 PF00270 DEAD/DEAH box helicase APP_00520 PF17757 UvrB interaction domain APP_00520 PF03461 TRCF domain APP_00520 PF00271 Helicase conserved C-terminal domain APP_00520 PF02559 CarD-like/TRCF domain APP_00530 PF15714 Stage V sporulation protein T C-terminal, transcription factor APP_00530 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin APP_00540 PF14667 Polysaccharide biosynthesis C-terminal domain APP_00540 PF01943 Polysaccharide biosynthesis protein APP_00550 PF03819 MazG nucleotide pyrophosphohydrolase domain APP_00550 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APP_00560 PF01479 S4 domain APP_00570 PF07873 YabP family APP_00580 PF04977 Septum formation initiator APP_00590 PF00575 S1 RNA binding domain APP_00600 PF07228 Stage II sporulation protein E (SpoIIE) APP_00610 PF00092 von Willebrand factor type A domain APP_00620 PF00069 Protein kinase domain APP_00630 PF01171 PP-loop family APP_00630 PF11734 TilS substrate C-terminal domain APP_00630 PF09179 TilS substrate binding domain APP_00650 PF06480 FtsH Extracellular APP_00650 PF00004 ATPase family associated with various cellular activities (AAA) APP_00650 PF17862 AAA+ lid domain APP_00650 PF01434 Peptidase family M41 APP_00660 PF03309 Type III pantothenate kinase APP_00670 PF01430 Hsp33 protein APP_00680 PF13145 PPIC-type PPIASE domain APP_00690 PF00291 Pyridoxal-phosphate dependent enzyme APP_00700 PF00425 chorismate binding enzyme APP_00700 PF04715 Anthranilate synthase component I, N terminal region APP_00710 PF00117 Glutamine amidotransferase class-I APP_00720 PF01063 Amino-transferase class IV APP_00730 PF00809 Pterin binding enzyme APP_00740 PF02152 Dihydroneopterin aldolase APP_00750 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) APP_00760 PF01381 Helix-turn-helix APP_00770 PF01207 Dihydrouridine synthase (Dus) APP_00780 PF00152 tRNA synthetases class II (D, K and N) APP_00780 PF01336 OB-fold nucleic acid binding domain APP_00790 PF01446 Replication protein APP_00830 PF01446 Replication protein APP_00840 PF01446 Replication protein APP_00860 PF00005 ABC transporter APP_00860 PF13732 Domain of unknown function (DUF4162) APP_00890 PF01478 Type IV leader peptidase family APP_00890 PF06750 Bacterial Peptidase A24 N-terminal domain APP_00940 PF00482 Type II secretion system (T2SS), protein F APP_00950 PF00437 Type II/IV secretion system protein APP_00960 PF00437 Type II/IV secretion system protein APP_00960 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain APP_01010 PF02308 MgtC family APP_01020 PF17727 CtsR C-terminal dimerization domain APP_01020 PF05848 CtsR N-terminal HTH domain APP_01030 PF02151 UvrB/uvrC motif APP_01040 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain APP_01050 PF07724 AAA domain (Cdc48 subfamily) APP_01050 PF10431 C-terminal, D2-small domain, of ClpB protein APP_01050 PF00004 ATPase family associated with various cellular activities (AAA) APP_01050 PF02861 Clp amino terminal domain, pathogenicity island component APP_01050 PF17871 AAA lid domain APP_01060 PF18073 Rubredoxin metal binding domain APP_01070 PF02457 DisA bacterial checkpoint controller nucleotide-binding APP_01070 PF10635 DisA bacterial checkpoint controller linker region APP_01090 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase APP_01100 PF02542 YgbB family APP_01110 PF00749 tRNA synthetases class I (E and Q), catalytic domain APP_01120 PF06426 Serine acetyltransferase, N-terminal APP_01120 PF00132 Bacterial transferase hexapeptide (six repeats) APP_01130 PF09190 DALR domain APP_01130 PF01406 tRNA synthetases class I (C) catalytic domain APP_01140 PF00636 Ribonuclease III domain APP_01150 PF08032 RNA 2'-O ribose methyltransferase substrate binding APP_01150 PF00588 SpoU rRNA Methylase family APP_01160 PF05991 YacP-like NYN domain APP_01170 PF08281 Sigma-70, region 4 APP_01170 PF04542 Sigma-70 region 2 APP_01180 PF00584 SecE/Sec61-gamma subunits of protein translocation complex APP_01190 PF02357 Transcription termination factor nusG APP_01190 PF00467 KOW motif APP_01200 PF00298 Ribosomal protein L11, RNA binding domain APP_01200 PF03946 Ribosomal protein L11, N-terminal domain APP_01210 PF00687 Ribosomal protein L1p/L10e family APP_01220 PF00466 Ribosomal protein L10 APP_01230 PF16320 Ribosomal protein L7/L12 dimerisation domain APP_01230 PF00542 Ribosomal protein L7/L12 C-terminal domain APP_01240 PF05175 Methyltransferase small domain APP_01250 PF04563 RNA polymerase beta subunit APP_01250 PF04561 RNA polymerase Rpb2, domain 2 APP_01250 PF00562 RNA polymerase Rpb2, domain 6 APP_01250 PF04560 RNA polymerase Rpb2, domain 7 APP_01250 PF04565 RNA polymerase Rpb2, domain 3 APP_01250 PF10385 RNA polymerase beta subunit external 1 domain APP_01260 PF04997 RNA polymerase Rpb1, domain 1 APP_01260 PF00623 RNA polymerase Rpb1, domain 2 APP_01260 PF04998 RNA polymerase Rpb1, domain 5 APP_01260 PF05000 RNA polymerase Rpb1, domain 4 APP_01260 PF04983 RNA polymerase Rpb1, domain 3 APP_01270 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family APP_01280 PF00164 Ribosomal protein S12/S23 APP_01290 PF00177 Ribosomal protein S7p/S5e APP_01300 PF03764 Elongation factor G, domain IV APP_01300 PF14492 Elongation Factor G, domain II APP_01300 PF00009 Elongation factor Tu GTP binding domain APP_01300 PF00679 Elongation factor G C-terminus APP_01300 PF03144 Elongation factor Tu domain 2 APP_01310 PF03144 Elongation factor Tu domain 2 APP_01310 PF03143 Elongation factor Tu C-terminal domain APP_01310 PF00009 Elongation factor Tu GTP binding domain APP_01320 PF00338 Ribosomal protein S10p/S20e APP_01330 PF00297 Ribosomal protein L3 APP_01340 PF00573 Ribosomal protein L4/L1 family APP_01350 PF00276 Ribosomal protein L23 APP_01360 PF03947 Ribosomal Proteins L2, C-terminal domain APP_01360 PF00181 Ribosomal Proteins L2, RNA binding domain APP_01370 PF00203 Ribosomal protein S19 APP_01380 PF00237 Ribosomal protein L22p/L17e APP_01390 PF00189 Ribosomal protein S3, C-terminal domain APP_01390 PF07650 KH domain APP_01400 PF00252 Ribosomal protein L16p/L10e APP_01410 PF00831 Ribosomal L29 protein APP_01420 PF00366 Ribosomal protein S17 APP_01430 PF00238 Ribosomal protein L14p/L23e APP_01440 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 APP_01440 PF00467 KOW motif APP_01450 PF00281 Ribosomal protein L5 APP_01450 PF00673 ribosomal L5P family C-terminus APP_01460 PF00253 Ribosomal protein S14p/S29e APP_01470 PF00410 Ribosomal protein S8 APP_01480 PF00347 Ribosomal protein L6 APP_01490 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast APP_01500 PF00333 Ribosomal protein S5, N-terminal domain APP_01500 PF03719 Ribosomal protein S5, C-terminal domain APP_01510 PF00327 Ribosomal protein L30p/L7e APP_01520 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A APP_01530 PF00344 SecY translocase APP_01540 PF05191 Adenylate kinase, active site lid APP_01550 PF00557 Metallopeptidase family M24 APP_01570 PF01176 Translation initiation factor 1A / IF-1 APP_01580 PF00416 Ribosomal protein S13/S18 APP_01590 PF00411 Ribosomal protein S11 APP_01600 PF01000 RNA polymerase Rpb3/RpoA insert domain APP_01600 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain APP_01600 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain APP_01610 PF01196 Ribosomal protein L17 APP_01620 PF00005 ABC transporter APP_01630 PF00005 ABC transporter APP_01640 PF02361 Cobalt transport protein APP_01650 PF01416 tRNA pseudouridine synthase APP_01660 PF00572 Ribosomal protein L13 APP_01670 PF00380 Ribosomal protein S9/S16 APP_01690 PF10460 Peptidase M30 APP_01700 PF01520 N-acetylmuramoyl-L-alanine amidase APP_01710 PF10609 NUBPL iron-transfer P-loop NTPase APP_01720 PF17898 Spore germination GerD central core domain APP_01730 PF14089 KinB-signalling pathway activation in sporulation APP_01740 PF01522 Polysaccharide deacetylase APP_01760 PF13411 MerR HTH family regulatory protein APP_01760 PF07739 TipAS antibiotic-recognition domain APP_01770 PF08281 Sigma-70, region 4 APP_01770 PF04542 Sigma-70 region 2 APP_01780 PF13490 Putative zinc-finger APP_01790 PF02457 DisA bacterial checkpoint controller nucleotide-binding APP_01800 PF07949 YbbR-like protein APP_01810 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APP_01810 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APP_01810 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APP_01810 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APP_01820 PF01380 SIS domain APP_01850 PF13520 Amino acid permease APP_01880 PF02603 HPr Serine kinase N terminus APP_01880 PF07475 HPr Serine kinase C-terminal domain APP_01890 PF02378 Phosphotransferase system, EIIC APP_01890 PF00367 phosphotransferase system, EIIB APP_01910 PF13580 SIS domain APP_01920 PF01979 Amidohydrolase family APP_01930 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase APP_01940 PF00392 Bacterial regulatory proteins, gntR family APP_01940 PF07702 UTRA domain APP_02050 PF00872 Transposase, Mutator family APP_02060 PF13411 MerR HTH family regulatory protein APP_02070 PF03471 Transporter associated domain APP_02070 PF00571 CBS domain APP_02070 PF01595 Cyclin M transmembrane N-terminal domain APP_02100 PF17369 Family of unknown function (DUF5391) APP_02130 PF00296 Luciferase-like monooxygenase APP_02140 PF01571 Aminomethyltransferase folate-binding domain APP_02140 PF08669 Glycine cleavage T-protein C-terminal barrel domain APP_02140 PF17806 Sarcosine oxidase A3 domain APP_02140 PF07992 Pyridine nucleotide-disulphide oxidoreductase APP_02170 PF00665 Integrase core domain APP_02180 PF00665 Integrase core domain APP_02190 PF00294 pfkB family carbohydrate kinase APP_02200 PF08220 DeoR-like helix-turn-helix domain APP_02200 PF00455 DeoR C terminal sensor domain APP_02220 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APP_02230 PF03611 PTS system sugar-specific permease component APP_02240 PF08240 Alcohol dehydrogenase GroES-like domain APP_02240 PF00107 Zinc-binding dehydrogenase APP_02250 PF01791 DeoC/LacD family aldolase APP_02260 PF00324 Amino acid permease APP_02270 PF03466 LysR substrate binding domain APP_02270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APP_02280 PF03060 Nitronate monooxygenase APP_02310 PF02913 FAD linked oxidases, C-terminal domain APP_02310 PF01565 FAD binding domain APP_02320 PF02754 Cysteine-rich domain APP_02320 PF13183 4Fe-4S dicluster domain APP_02330 PF02913 FAD linked oxidases, C-terminal domain APP_02330 PF01565 FAD binding domain APP_02340 PF01274 Malate synthase APP_02350 PF01557 Fumarylacetoacetate (FAA) hydrolase family APP_02360 PF09339 IclR helix-turn-helix domain APP_02360 PF01614 Bacterial transcriptional regulator APP_02370 PF02652 L-lactate permease APP_02380 PF02583 Metal-sensitive transcriptional repressor APP_02390 PF01554 MatE APP_02410 PF00528 Binding-protein-dependent transport system inner membrane component APP_02420 PF00005 ABC transporter APP_02460 PF00893 Small Multidrug Resistance protein APP_02470 PF00893 Small Multidrug Resistance protein APP_02490 PF06134 L-rhamnose isomerase (RhaA) APP_02500 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APP_02500 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APP_02510 PF00300 Histidine phosphatase superfamily (branch 1) APP_02520 PF13407 Periplasmic binding protein domain APP_02530 PF00672 HAMP domain APP_02530 PF06580 Histidine kinase APP_02530 PF02743 Cache domain APP_02530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APP_02540 PF12833 Helix-turn-helix domain APP_02550 PF00834 Ribulose-phosphate 3 epimerase family APP_02560 PF00294 pfkB family carbohydrate kinase APP_02570 PF00005 ABC transporter APP_02580 PF02653 Branched-chain amino acid transport system / permease component APP_02590 PF02653 Branched-chain amino acid transport system / permease component APP_02600 PF13407 Periplasmic binding protein domain APP_02610 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APP_02610 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APP_02640 PF00005 ABC transporter APP_02650 PF02517 CPBP intramembrane metalloprotease APP_02660 PF13186 Iron-sulfur cluster-binding domain APP_02660 PF04055 Radical SAM superfamily APP_02690 PF07690 Major Facilitator Superfamily APP_02720 PF08327 Activator of Hsp90 ATPase homolog 1-like protein APP_02750 PF00483 Nucleotidyl transferase APP_02770 PF00933 Glycosyl hydrolase family 3 N terminal domain APP_02800 PF05525 Branched-chain amino acid transport protein APP_02820 PF00296 Luciferase-like monooxygenase APP_02840 PF08028 Acyl-CoA dehydrogenase, C-terminal domain APP_02840 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APP_02850 PF03358 NADPH-dependent FMN reductase APP_02860 PF00296 Luciferase-like monooxygenase APP_02870 PF00296 Luciferase-like monooxygenase APP_02880 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APP_02880 PF08028 Acyl-CoA dehydrogenase, C-terminal domain APP_02890 PF08028 Acyl-CoA dehydrogenase, C-terminal domain APP_02890 PF02770 Acyl-CoA dehydrogenase, middle domain APP_02890 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APP_02900 PF00005 ABC transporter APP_02900 PF09383 NIL domain APP_02910 PF00528 Binding-protein-dependent transport system inner membrane component APP_02920 PF03180 NLPA lipoprotein APP_02930 PF00296 Luciferase-like monooxygenase APP_02940 PF00248 Aldo/keto reductase family APP_02950 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APP_02950 PF08028 Acyl-CoA dehydrogenase, C-terminal domain APP_02960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APP_02960 PF02770 Acyl-CoA dehydrogenase, middle domain APP_02960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APP_02970 PF00296 Luciferase-like monooxygenase APP_02980 PF01871 AMMECR1 APP_02980 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase APP_02990 PF01361 Tautomerase enzyme APP_03010 PF00682 HMGL-like APP_03010 PF07836 DmpG-like communication domain APP_03020 PF01118 Semialdehyde dehydrogenase, NAD binding domain APP_03020 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation APP_03030 PF01557 Fumarylacetoacetate (FAA) hydrolase family APP_03040 PF00171 Aldehyde dehydrogenase family APP_03050 PF09339 IclR helix-turn-helix domain APP_03050 PF01614 Bacterial transcriptional regulator APP_03070 PF00459 Inositol monophosphatase family APP_03080 PF07729 FCD domain APP_03080 PF00392 Bacterial regulatory proteins, gntR family APP_03090 PF02515 CoA-transferase family III APP_03100 PF00682 HMGL-like APP_03120 PF00072 Response regulator receiver domain APP_03120 PF08664 YcbB domain APP_03130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APP_03140 PF00528 Binding-protein-dependent transport system inner membrane component APP_03150 PF00528 Binding-protein-dependent transport system inner membrane component APP_03160 PF00497 Bacterial extracellular solute-binding proteins, family 3 APP_03170 PF00005 ABC transporter APP_03210 PF03881 Fructosamine kinase APP_03220 PF01965 DJ-1/PfpI family APP_03230 PF00854 POT family APP_03250 PF00854 POT family APP_03260 PF00296 Luciferase-like monooxygenase APP_03270 PF13460 NAD(P)H-binding APP_03280 PF07690 Major Facilitator Superfamily APP_03320 PF00005 ABC transporter APP_03330 PF12704 MacB-like periplasmic core domain APP_03330 PF02687 FtsX-like permease family APP_03340 PF00072 Response regulator receiver domain APP_03340 PF00486 Transcriptional regulatory protein, C terminal APP_03350 PF00672 HAMP domain APP_03350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APP_03350 PF00512 His Kinase A (phospho-acceptor) domain APP_03360 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APP_03370 PF05504 Spore germination B3/ GerAC like, C-terminal APP_03390 PF01645 Conserved region in glutamate synthase APP_03400 PF02915 Rubrerythrin APP_03410 PF01063 Amino-transferase class IV APP_03420 PF13419 Haloacid dehalogenase-like hydrolase APP_03430 PF00085 Thioredoxin APP_03440 PF01820 D-ala D-ala ligase N-terminus APP_03440 PF07478 D-ala D-ala ligase C-terminus APP_03450 PF02875 Mur ligase family, glutamate ligase domain APP_03450 PF08245 Mur ligase middle domain APP_03450 PF01225 Mur ligase family, catalytic domain APP_03460 PF00271 Helicase conserved C-terminal domain APP_03460 PF00270 DEAD/DEAH box helicase APP_03470 PF03703 Bacterial PH domain APP_03480 PF03703 Bacterial PH domain APP_03490 PF01694 Rhomboid family APP_03500 PF01648 4'-phosphopantetheinyl transferase superfamily APP_03520 PF00842 Alanine racemase, C-terminal domain APP_03520 PF01168 Alanine racemase, N-terminal domain APP_03530 PF01402 Ribbon-helix-helix protein, copG family APP_03540 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system APP_03550 PF01740 STAS domain APP_03550 PF08678 Rsbr N terminal APP_03560 PF01740 STAS domain APP_03570 PF13581 Histidine kinase-like ATPase domain APP_03580 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain APP_03580 PF07228 Stage II sporulation protein E (SpoIIE) APP_03590 PF01740 STAS domain APP_03600 PF13581 Histidine kinase-like ATPase domain APP_03610 PF04545 Sigma-70, region 4 APP_03610 PF04542 Sigma-70 region 2 APP_03610 PF04539 Sigma-70 region 3 APP_03620 PF07228 Stage II sporulation protein E (SpoIIE) APP_03630 PF16921 Tex protein YqgF-like domain APP_03630 PF09371 Tex-like protein N-terminal domain APP_03630 PF00575 S1 RNA binding domain APP_03630 PF17674 HHH domain APP_03640 PF10263 SprT-like family APP_03650 PF02769 AIR synthase related protein, C-terminal domain APP_03650 PF00586 AIR synthase related protein, N-terminal domain APP_03660 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE APP_03670 PF00814 Glycoprotease family APP_03680 PF00583 Acetyltransferase (GNAT) family APP_03690 PF00814 Glycoprotease family APP_03700 PF00005 ABC transporter APP_03700 PF16326 ABC transporter C-terminal domain APP_03700 PF12848 ABC transporter APP_03710 PF02629 CoA binding domain APP_03710 PF06971 Putative DNA-binding protein N-terminus APP_03720 PF02416 mttA/Hcf106 family APP_03730 PF00902 Sec-independent protein translocase protein (TatC) APP_03750 PF02517 CPBP intramembrane metalloprotease APP_03760 PF00166 Chaperonin 10 Kd subunit APP_03770 PF00118 TCP-1/cpn60 chaperonin family APP_03780 PF02899 Phage integrase, N-terminal SAM-like domain APP_03780 PF00589 Phage integrase family APP_03860 PF01555 DNA methylase APP_03880 PF00589 Phage integrase family APP_03880 PF02899 Phage integrase, N-terminal SAM-like domain APP_03920 PF00665 Integrase core domain APP_03920 PF09299 Mu transposase, C-terminal APP_03950 PF00005 ABC transporter APP_03980 PF05675 Protein of unknown function (DUF817) APP_04010 PF03050 Transposase IS66 family APP_04010 PF13005 zinc-finger binding domain of transposase IS66 APP_04010 PF13007 Transposase C of IS166 homeodomain APP_04010 PF13817 IS66 C-terminal element APP_04020 PF13443 Cro/C1-type HTH DNA-binding domain APP_04030 PF11188 Protein of unknown function (DUF2975) APP_04040 PF01609 Transposase DDE domain APP_04070 PF01261 Xylose isomerase-like TIM barrel APP_04090 PF01435 Peptidase family M48 APP_04130 PF00005 ABC transporter APP_04180 PF00455 DeoR C terminal sensor domain APP_04180 PF08220 DeoR-like helix-turn-helix domain APP_04190 PF00171 Aldehyde dehydrogenase family APP_04200 PF04962 KduI/IolB family APP_04210 PF00294 pfkB family carbohydrate kinase APP_04220 PF00205 Thiamine pyrophosphate enzyme, central domain APP_04220 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APP_04220 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APP_04230 PF01261 Xylose isomerase-like TIM barrel APP_04240 PF00083 Sugar (and other) transporter APP_04250 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APP_04250 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APP_04260 PF01261 Xylose isomerase-like TIM barrel APP_04270 PF01261 Xylose isomerase-like TIM barrel APP_04280 PF01116 Fructose-bisphosphate aldolase class-II APP_04300 PF01261 Xylose isomerase-like TIM barrel APP_04310 PF00248 Aldo/keto reductase family APP_04330 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APP_04330 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APP_04340 PF13407 Periplasmic binding protein domain APP_04350 PF00005 ABC transporter APP_04360 PF02653 Branched-chain amino acid transport system / permease component APP_04390 PF01116 Fructose-bisphosphate aldolase class-II APP_04410 PF11553 Protein of unknown function (DUF3231) APP_04430 PF13183 4Fe-4S dicluster domain APP_04430 PF02754 Cysteine-rich domain APP_04440 PF01565 FAD binding domain APP_04440 PF02913 FAD linked oxidases, C-terminal domain APP_04450 PF00392 Bacterial regulatory proteins, gntR family APP_04450 PF07729 FCD domain APP_04460 PF07690 Major Facilitator Superfamily APP_04470 PF00171 Aldehyde dehydrogenase family APP_04480 PF01300 Telomere recombination APP_04480 PF17788 HypF Kae1-like domain APP_04480 PF00708 Acylphosphatase APP_04480 PF07503 HypF finger APP_04500 PF02769 AIR synthase related protein, C-terminal domain APP_04500 PF00586 AIR synthase related protein, N-terminal domain APP_04510 PF01924 Hydrogenase formation hypA family APP_04520 PF01455 HupF/HypC family APP_04540 PF04324 BFD-like [2Fe-2S] binding domain APP_04540 PF01592 NifU-like N terminal domain APP_04540 PF01106 NifU-like domain APP_04590 PF00374 Nickel-dependent hydrogenase APP_04620 PF02492 CobW/HypB/UreG, nucleotide-binding domain APP_04630 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA APP_04650 PF07702 UTRA domain APP_04650 PF00392 Bacterial regulatory proteins, gntR family APP_04680 PF05861 Bacterial phosphonate metabolism protein (PhnI) APP_04690 PF06007 Phosphonate metabolism protein PhnJ APP_04700 PF00005 ABC transporter APP_04710 PF07969 Amidohydrolase family APP_04720 PF00132 Bacterial transferase hexapeptide (six repeats) APP_04730 PF00005 ABC transporter APP_04750 PF00005 ABC transporter APP_04760 PF00528 Binding-protein-dependent transport system inner membrane component APP_04770 PF00528 Binding-protein-dependent transport system inner membrane component APP_04780 PF02811 PHP domain APP_04810 PF00005 ABC transporter APP_04870 PF00005 ABC transporter APP_04900 PF00892 EamA-like transporter family APP_04910 PF00155 Aminotransferase class I and II APP_04940 PF13478 XdhC Rossmann domain APP_04940 PF02625 XdhC and CoxI family APP_04950 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain APP_04950 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APP_04960 PF00753 Metallo-beta-lactamase superfamily APP_04980 PF00941 FAD binding domain in molybdopterin dehydrogenase APP_04980 PF03450 CO dehydrogenase flavoprotein C-terminal domain APP_04990 PF00111 2Fe-2S iron-sulfur cluster binding domain APP_04990 PF01799 [2Fe-2S] binding domain APP_05000 PF00676 Dehydrogenase E1 component APP_05010 PF02780 Transketolase, C-terminal domain APP_05010 PF02779 Transketolase, pyrimidine binding domain APP_05020 PF00364 Biotin-requiring enzyme APP_05020 PF02817 e3 binding domain APP_05020 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APP_05030 PF04055 Radical SAM superfamily APP_05030 PF06463 Molybdenum Cofactor Synthesis C APP_05040 PF00994 Probable molybdopterin binding domain APP_05040 PF03454 MoeA C-terminal region (domain IV) APP_05040 PF03453 MoeA N-terminal region (domain I and II) APP_05050 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase APP_05060 PF01297 Zinc-uptake complex component A periplasmic APP_05070 PF00005 ABC transporter APP_05080 PF00950 ABC 3 transport family APP_05090 PF00950 ABC 3 transport family APP_05100 PF01325 Iron dependent repressor, N-terminal DNA binding domain APP_05100 PF02742 Iron dependent repressor, metal binding and dimerisation domain APP_05120 PF04203 Sortase domain APP_05130 PF00324 Amino acid permease APP_05140 PF00912 Transglycosylase APP_05140 PF00905 Penicillin binding protein transpeptidase domain APP_05150 PF01418 Helix-turn-helix domain, rpiR family APP_05150 PF01380 SIS domain APP_05160 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APP_05160 PF02378 Phosphotransferase system, EIIC APP_05160 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APP_05170 PF09261 Alpha mannosidase middle domain APP_05170 PF07748 Glycosyl hydrolases family 38 C-terminal domain APP_05170 PF01074 Glycosyl hydrolases family 38 N-terminal domain APP_05180 PF02595 Glycerate kinase family APP_05190 PF01238 Phosphomannose isomerase type I APP_05240 PF03608 PTS system enzyme II sorbitol-specific factor APP_05250 PF07663 Sorbitol phosphotransferase enzyme II C-terminus APP_05250 PF03612 Sorbitol phosphotransferase enzyme II N-terminus APP_05260 PF03829 PTS system glucitol/sorbitol-specific IIA component APP_05270 PF04198 Putative sugar-binding domain APP_05280 PF00676 Dehydrogenase E1 component APP_05290 PF00364 Biotin-requiring enzyme APP_05290 PF02779 Transketolase, pyrimidine binding domain APP_05290 PF02780 Transketolase, C-terminal domain APP_05300 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APP_05300 PF02817 e3 binding domain APP_05300 PF00364 Biotin-requiring enzyme APP_05310 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APP_05310 PF07992 Pyridine nucleotide-disulphide oxidoreductase APP_05320 PF04198 Putative sugar-binding domain APP_05330 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APP_05340 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APP_05350 PF03611 PTS system sugar-specific permease component APP_05360 PF00072 Response regulator receiver domain APP_05360 PF04703 FaeA-like protein APP_05370 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain APP_05370 PF17203 Single cache domain 3 APP_05370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APP_05380 PF03480 Bacterial extracellular solute-binding protein, family 7 APP_05390 PF00375 Sodium:dicarboxylate symporter family APP_05400 PF01238 Phosphomannose isomerase type I APP_05430 PF03816 Cell envelope-related transcriptional attenuator domain APP_05450 PF02350 UDP-N-acetylglucosamine 2-epimerase APP_05460 PF01467 Cytidylyltransferase-like APP_05470 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase APP_05480 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase APP_05490 PF01061 ABC-2 type transporter APP_05500 PF08239 Bacterial SH3 domain APP_05500 PF00005 ABC transporter APP_05510 PF05036 Sporulation related domain APP_05510 PF08239 Bacterial SH3 domain APP_05510 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase APP_05520 PF13457 GW (Gly-Tryp) dipeptide domain APP_05520 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase APP_05530 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase APP_05550 PF03023 Lipid II flippase MurJ APP_05570 PF00534 Glycosyl transferases group 1 APP_05570 PF13579 Glycosyl transferase 4-like domain APP_05580 PF03808 Glycosyl transferase WecB/TagA/CpsF family APP_05590 PF00534 Glycosyl transferases group 1 APP_05590 PF13439 Glycosyltransferase Family 4 APP_05600 PF00953 Glycosyl transferase family 4 APP_05610 PF03816 Cell envelope-related transcriptional attenuator domain APP_05620 PF01205 Uncharacterized protein family UPF0029 APP_05620 PF09186 Domain of unknown function (DUF1949) APP_05630 PF05384 Sensor protein DegS APP_05630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APP_05630 PF07730 Histidine kinase APP_05640 PF00196 Bacterial regulatory proteins, luxR family APP_05640 PF00072 Response regulator receiver domain APP_05650 PF02645 Uncharacterised protein, DegV family COG1307 APP_05660 PF04851 Type III restriction enzyme, res subunit APP_05660 PF00271 Helicase conserved C-terminal domain APP_05670 PF10719 Late competence development protein ComFB APP_05720 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APP_05720 PF00460 Flagella basal body rod protein APP_05730 PF00700 Bacterial flagellin C-terminal helical region APP_05730 PF00669 Bacterial flagellin N-terminal helical region APP_05750 PF02623 FliW protein APP_05760 PF02599 Global regulator protein family APP_05770 PF00700 Bacterial flagellin C-terminal helical region APP_05770 PF00669 Bacterial flagellin N-terminal helical region APP_05780 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APP_05810 PF01370 NAD dependent epimerase/dehydratase family APP_05820 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APP_05860 PF02350 UDP-N-acetylglucosamine 2-epimerase APP_05870 PF02585 GlcNAc-PI de-N-acetylase APP_05880 PF08666 SAF domain APP_05880 PF03102 NeuB family APP_05900 PF00483 Nucleotidyl transferase APP_05910 PF02348 Cytidylyltransferase APP_05910 PF13472 GDSL-like Lipase/Acylhydrolase family APP_05950 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APP_05960 PF00392 Bacterial regulatory proteins, gntR family APP_05960 PF07729 FCD domain APP_05980 PF13276 HTH-like domain APP_05980 PF00665 Integrase core domain APP_05980 PF13333 Integrase core domain APP_06000 PF02585 GlcNAc-PI de-N-acetylase APP_06010 PF03737 Aldolase/RraA APP_06030 PF07690 Major Facilitator Superfamily APP_06040 PF00107 Zinc-binding dehydrogenase APP_06040 PF08240 Alcohol dehydrogenase GroES-like domain APP_06050 PF00440 Bacterial regulatory proteins, tetR family APP_06050 PF08361 MAATS-type transcriptional repressor, C-terminal region APP_06070 PF00440 Bacterial regulatory proteins, tetR family APP_06080 PF00005 ABC transporter APP_06110 PF06725 3D domain APP_06110 PF01476 LysM domain APP_06130 PF01027 Inhibitor of apoptosis-promoting Bax1 APP_06140 PF00158 Sigma-54 interaction domain APP_06140 PF02954 Bacterial regulatory protein, Fis family APP_06140 PF00989 PAS fold APP_06150 PF00465 Iron-containing alcohol dehydrogenase APP_06170 PF00171 Aldehyde dehydrogenase family APP_06180 PF10026 Predicted Zn-dependent protease (DUF2268) APP_06190 PF07690 Major Facilitator Superfamily APP_06200 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APP_06200 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APP_06210 PF03123 CAT RNA binding domain APP_06210 PF00874 PRD domain APP_06230 PF00874 PRD domain APP_06230 PF03123 CAT RNA binding domain APP_06240 PF00232 Glycosyl hydrolase family 1 APP_06250 PF00232 Glycosyl hydrolase family 1 APP_06260 PF02378 Phosphotransferase system, EIIC APP_06260 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 APP_06260 PF00367 phosphotransferase system, EIIB APP_06270 PF09084 NMT1/THI5 like APP_06280 PF00528 Binding-protein-dependent transport system inner membrane component APP_06290 PF00005 ABC transporter APP_06300 PF00672 HAMP domain APP_06300 PF05227 CHASE3 domain APP_06300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APP_06320 PF09347 Domain of unknown function (DUF1989) APP_06330 PF00289 Biotin carboxylase, N-terminal domain APP_06330 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APP_06330 PF02785 Biotin carboxylase C-terminal domain APP_06340 PF01425 Amidase APP_06390 PF00005 ABC transporter APP_06390 PF13732 Domain of unknown function (DUF4162) APP_06410 PF02743 Cache domain APP_06410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APP_06410 PF00672 HAMP domain APP_06420 PF00596 Class II Aldolase and Adducin N-terminal domain APP_06430 PF08220 DeoR-like helix-turn-helix domain APP_06430 PF00455 DeoR C terminal sensor domain APP_06440 PF05025 RbsD / FucU transport protein family APP_06450 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APP_06450 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APP_06460 PF00923 Transaldolase/Fructose-6-phosphate aldolase APP_06470 PF00005 ABC transporter APP_06480 PF02653 Branched-chain amino acid transport system / permease component APP_06500 PF00596 Class II Aldolase and Adducin N-terminal domain APP_06510 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APP_06510 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APP_06520 PF02952 L-fucose isomerase, C-terminal domain APP_06520 PF07881 L-fucose isomerase, first N-terminal domain APP_06520 PF07882 L-fucose isomerase, second N-terminal domain APP_06530 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APP_06530 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APP_06540 PF00108 Thiolase, N-terminal domain APP_06540 PF02803 Thiolase, C-terminal domain APP_06550 PF01144 Coenzyme A transferase APP_06560 PF01144 Coenzyme A transferase APP_06570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APP_06570 PF03466 LysR substrate binding domain APP_06580 PF01968 Hydantoinase/oxoprolinase APP_06580 PF05378 Hydantoinase/oxoprolinase N-terminal region APP_06590 PF02538 Hydantoinase B/oxoprolinase APP_06600 PF08882 Acetone carboxylase gamma subunit APP_06610 PF02954 Bacterial regulatory protein, Fis family APP_06610 PF13426 PAS domain APP_06610 PF00158 Sigma-54 interaction domain APP_06630 PF07730 Histidine kinase APP_06640 PF00196 Bacterial regulatory proteins, luxR family APP_06640 PF00072 Response regulator receiver domain APP_06650 PF00005 ABC transporter APP_06680 PF00664 ABC transporter transmembrane region APP_06680 PF00005 ABC transporter APP_06690 PF03737 Aldolase/RraA APP_06700 PF07690 Major Facilitator Superfamily APP_06730 PF01661 Macro domain APP_06740 PF00005 ABC transporter APP_06750 PF04073 Aminoacyl-tRNA editing domain APP_06770 PF03109 ABC1 family APP_06780 PF01501 Glycosyl transferase family 8 APP_06780 PF08437 Glycosyl transferase family 8 C-terminal APP_06790 PF07905 Purine catabolism regulatory protein-like family APP_06790 PF17853 GGDEF-like domain APP_06790 PF13556 PucR C-terminal helix-turn-helix domain APP_06800 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APP_06800 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APP_06810 PF00378 Enoyl-CoA hydratase/isomerase APP_06820 PF13193 AMP-binding enzyme C-terminal domain APP_06820 PF00501 AMP-binding enzyme APP_06850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APP_06850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APP_06850 PF02770 Acyl-CoA dehydrogenase, middle domain APP_06870 PF01494 FAD binding domain APP_06890 PF14535 AMP-binding enzyme C-terminal domain APP_06890 PF00501 AMP-binding enzyme APP_06900 PF01614 Bacterial transcriptional regulator APP_06900 PF09339 IclR helix-turn-helix domain APP_06920 PF01557 Fumarylacetoacetate (FAA) hydrolase family APP_06940 PF07883 Cupin domain APP_06970 PF03646 FlaG protein APP_06980 PF07196 Flagellin hook IN motif APP_06980 PF07195 Flagellar hook-associated protein 2 C-terminus APP_06980 PF02465 Flagellar hook-associated protein 2 N-terminus APP_06990 PF02561 Flagellar protein FliS APP_07010 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein APP_07010 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus APP_07020 PF01043 SecA preprotein cross-linking domain APP_07020 PF07517 SecA DEAD-like domain APP_07020 PF02810 SEC-C motif APP_07020 PF07516 SecA Wing and Scaffold domain APP_07030 PF00472 RF-1 domain APP_07030 PF03462 PCRF domain APP_07040 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APP_07050 PF00005 ABC transporter APP_07060 PF02687 FtsX-like permease family APP_07060 PF18075 FtsX extracellular domain APP_07070 PF08525 Opacity-associated protein A N-terminal motif APP_07070 PF01476 LysM domain APP_07070 PF01551 Peptidase family M23 APP_07080 PF01471 Putative peptidoglycan binding domain APP_07080 PF17820 PDZ domain APP_07080 PF03572 Peptidase family S41 APP_07090 PF17820 PDZ domain APP_07110 PF01545 Cation efflux family APP_07110 PF16916 Dimerisation domain of Zinc Transporter APP_07120 PF01022 Bacterial regulatory protein, arsR family APP_07150 PF00403 Heavy-metal-associated domain APP_07160 PF00480 ROK family APP_07180 PF04851 Type III restriction enzyme, res subunit APP_07180 PF02151 UvrB/uvrC motif APP_07180 PF12344 Ultra-violet resistance protein B APP_07180 PF17757 UvrB interaction domain APP_07180 PF00271 Helicase conserved C-terminal domain APP_07190 PF17755 UvrA DNA-binding domain APP_07190 PF17760 UvrA interaction domain APP_07190 PF00005 ABC transporter APP_07210 PF08028 Acyl-CoA dehydrogenase, C-terminal domain APP_07210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APP_07210 PF02770 Acyl-CoA dehydrogenase, middle domain APP_07220 PF00005 ABC transporter APP_07230 PF00497 Bacterial extracellular solute-binding proteins, family 3 APP_07230 PF01464 Transglycosylase SLT domain APP_07240 PF00528 Binding-protein-dependent transport system inner membrane component APP_07250 PF00528 Binding-protein-dependent transport system inner membrane component APP_07280 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV APP_07290 PF00149 Calcineurin-like phosphoesterase APP_07300 PF07475 HPr Serine kinase C-terminal domain APP_07300 PF02603 HPr Serine kinase N terminus APP_07310 PF01790 Prolipoprotein diacylglyceryl transferase APP_07320 PF07670 Nucleoside recognition APP_07330 PF13419 Haloacid dehalogenase-like hydrolase APP_07340 PF14602 Hexapeptide repeat of succinyl-transferase APP_07350 PF13393 Histidyl-tRNA synthetase APP_07360 PF01634 ATP phosphoribosyltransferase APP_07370 PF00815 Histidinol dehydrogenase APP_07380 PF00475 Imidazoleglycerol-phosphate dehydratase APP_07390 PF00117 Glutamine amidotransferase class-I APP_07400 PF00977 Histidine biosynthesis protein APP_07410 PF00977 Histidine biosynthesis protein APP_07420 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase APP_07420 PF01502 Phosphoribosyl-AMP cyclohydrolase APP_07440 PF07992 Pyridine nucleotide-disulphide oxidoreductase APP_07450 PF00293 NUDIX domain APP_07460 PF03668 P-loop ATPase protein family APP_07470 PF01933 Uncharacterised protein family UPF0052 APP_07480 PF14527 WhiA LAGLIDADG-like domain APP_07480 PF10298 WhiA N-terminal LAGLIDADG-like domain APP_07480 PF02650 WhiA C-terminal HTH domain APP_07490 PF00381 PTS HPr component phosphorylation site APP_07500 PF00574 Clp protease APP_07520 PF04397 LytTr DNA-binding domain APP_07520 PF00072 Response regulator receiver domain APP_07530 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain APP_07530 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain APP_07540 PF02595 Glycerate kinase family APP_07550 PF01380 SIS domain APP_07550 PF01418 Helix-turn-helix domain, rpiR family APP_07560 PF11975 Family 4 glycosyl hydrolase C-terminal domain APP_07560 PF02056 Family 4 glycosyl hydrolase APP_07570 PF02378 Phosphotransferase system, EIIC APP_07570 PF00367 phosphotransferase system, EIIB APP_07570 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 APP_07600 PF01867 CRISPR associated protein Cas1 APP_07610 PF09827 CRISPR associated protein Cas2 APP_07650 PF03050 Transposase IS66 family APP_07650 PF13005 zinc-finger binding domain of transposase IS66 APP_07650 PF13817 IS66 C-terminal element APP_07650 PF13007 Transposase C of IS166 homeodomain APP_07700 PF18211 Csm1 subunit domain B APP_07720 PF03787 RAMP superfamily APP_07740 PF03787 RAMP superfamily APP_07790 PF01979 Amidohydrolase family APP_07800 PF00005 ABC transporter APP_07810 PF00528 Binding-protein-dependent transport system inner membrane component APP_07830 PF09628 YvfG protein APP_07840 PF04963 Sigma-54 factor, core binding domain APP_07840 PF00309 Sigma-54 factor, Activator interacting domain (AID) APP_07840 PF04552 Sigma-54, DNA binding domain APP_07860 PF04198 Putative sugar-binding domain APP_07870 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain APP_07870 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APP_07880 PF00162 Phosphoglycerate kinase APP_07890 PF00121 Triosephosphate isomerase APP_07900 PF06415 BPG-independent PGAM N-terminus (iPGM_N) APP_07900 PF01676 Metalloenzyme superfamily APP_07910 PF00113 Enolase, C-terminal TIM barrel domain APP_07910 PF03952 Enolase, N-terminal domain APP_07920 PF11208 Protein of unknown function (DUF2992) APP_07930 PF03840 Preprotein translocase SecG subunit APP_07940 PF12146 Serine aminopeptidase, S33 APP_07950 PF00575 S1 RNA binding domain APP_07950 PF00773 RNB domain APP_07950 PF08206 Ribonuclease B OB domain APP_07950 PF17876 Cold shock domain APP_07960 PF01668 SmpB protein APP_07990 PF02687 FtsX-like permease family APP_07990 PF12704 MacB-like periplasmic core domain APP_08030 PF00005 ABC transporter APP_08050 PF01609 Transposase DDE domain APP_08060 PF01842 ACT domain APP_08060 PF00551 Formyl transferase APP_08070 PF13411 MerR HTH family regulatory protein APP_08080 PF00206 Lyase APP_08080 PF10415 Fumarase C C-terminus APP_08090 PF13115 YtkA-like APP_08100 PF01497 Periplasmic binding protein APP_08110 PF01032 FecCD transport family APP_08120 PF01032 FecCD transport family APP_08130 PF00005 ABC transporter APP_08150 PF10835 Protein of unknown function (DUF2573) APP_08160 PF07875 Coat F domain APP_08180 PF00378 Enoyl-CoA hydratase/isomerase APP_08180 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APP_08180 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APP_08190 PF00108 Thiolase, N-terminal domain APP_08190 PF02803 Thiolase, C-terminal domain APP_08200 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APP_08200 PF02770 Acyl-CoA dehydrogenase, middle domain APP_08200 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APP_08210 PF03960 ArsC family APP_08220 PF01597 Glycine cleavage H-protein APP_08230 PF01751 Toprim domain APP_08240 PF00085 Thioredoxin APP_08260 PF09383 NIL domain APP_08260 PF00005 ABC transporter APP_08270 PF00528 Binding-protein-dependent transport system inner membrane component APP_08280 PF03180 NLPA lipoprotein APP_08300 PF00005 ABC transporter APP_08310 PF01458 Uncharacterized protein family (UPF0051) APP_08320 PF00266 Aminotransferase class-V APP_08330 PF01592 NifU-like N terminal domain APP_08340 PF01458 Uncharacterized protein family (UPF0051) APP_08360 PF01904 Protein of unknown function DUF72 APP_08370 PF02872 5'-nucleotidase, C-terminal domain APP_08380 PF08827 Domain of unknown function (DUF1805) APP_08390 PF01551 Peptidase family M23 APP_08400 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family APP_08400 PF04055 Radical SAM superfamily APP_08410 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) APP_08420 PF06265 Protein of unknown function (DUF1027) APP_08450 PF01934 Protein of unknown function DUF86 APP_08460 PF13344 Haloacid dehalogenase-like hydrolase APP_08470 PF04608 Phosphatidylglycerophosphatase A APP_08490 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APP_08490 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APP_08500 PF00742 Homoserine dehydrogenase APP_08500 PF01842 ACT domain APP_08500 PF03447 Homoserine dehydrogenase, NAD binding domain APP_08510 PF00291 Pyridoxal-phosphate dependent enzyme APP_08520 PF08544 GHMP kinases C terminal APP_08520 PF00288 GHMP kinases N terminal domain APP_08530 PF01106 NifU-like domain APP_08540 PF07315 Protein of unknown function (DUF1462) APP_08550 PF07992 Pyridine nucleotide-disulphide oxidoreductase APP_08560 PF07293 Protein of unknown function (DUF1450) APP_08570 PF01678 Diaminopimelate epimerase APP_08580 PF01521 Iron-sulphur cluster biosynthesis APP_08590 PF07992 Pyridine nucleotide-disulphide oxidoreductase APP_08600 PF07992 Pyridine nucleotide-disulphide oxidoreductase APP_08620 PF14068 Putative membrane protein APP_08640 PF06725 3D domain APP_08650 PF00883 Cytosol aminopeptidase family, catalytic domain APP_08650 PF02789 Cytosol aminopeptidase family, N-terminal domain APP_08660 PF01262 Alanine dehydrogenase/PNT, C-terminal domain APP_08660 PF05222 Alanine dehydrogenase/PNT, N-terminal domain APP_08670 PF01966 HD domain APP_08690 PF14166 YueH-like protein APP_08720 PF00348 Polyprenyl synthetase APP_08730 PF05952 Bacillus competence pheromone ComX APP_08740 PF07730 Histidine kinase APP_08740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APP_08750 PF00072 Response regulator receiver domain APP_08750 PF00196 Bacterial regulatory proteins, luxR family APP_08760 PF03334 Na+/H+ antiporter subunit APP_08770 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) APP_08780 PF01899 Na+/H+ ion antiporter subunit APP_08790 PF00361 Proton-conducting membrane transporter APP_08800 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L APP_08810 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter APP_08820 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APP_08820 PF00361 Proton-conducting membrane transporter APP_08820 PF13244 Domain of unknown function (DUF4040) APP_08840 PF00929 Exonuclease APP_08850 PF08810 Kinase associated protein B APP_08870 PF00155 Aminotransferase class I and II APP_08880 PF08958 Domain of unknown function (DUF1871) APP_08890 PF08386 TAP-like protein APP_08890 PF00561 alpha/beta hydrolase fold APP_08900 PF01037 Lrp/AsnC ligand binding domain APP_08910 PF00155 Aminotransferase class I and II APP_08920 PF00575 S1 RNA binding domain APP_08930 PF04070 Domain of unknown function (DUF378) APP_08940 PF00342 Phosphoglucose isomerase APP_08950 PF08868 YugN-like family APP_08960 PF07885 Ion channel APP_08960 PF02254 TrkA-N domain APP_08970 PF11458 Membrane-integrating protein Mistic APP_08980 PF04298 Putative neutral zinc metallopeptidase APP_08990 PF01894 Uncharacterised protein family UPF0047 APP_09020 PF01258 Prokaryotic dksA/traR C4-type zinc finger APP_09030 PF01040 UbiA prenyltransferase family APP_09040 PF00425 chorismate binding enzyme APP_09050 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APP_09050 PF16582 Middle domain of thiamine pyrophosphate APP_09050 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APP_09060 PF00561 alpha/beta hydrolase fold APP_09070 PF00378 Enoyl-CoA hydratase/isomerase APP_09080 PF00501 AMP-binding enzyme APP_09080 PF13193 AMP-binding enzyme C-terminal domain APP_09100 PF01809 Putative membrane protein insertion efficiency factor APP_09110 PF02664 S-Ribosylhomocysteinase (LuxS) APP_09120 PF00210 Ferritin-like domain APP_09140 PF00293 NUDIX domain APP_09150 PF00528 Binding-protein-dependent transport system inner membrane component APP_09160 PF00005 ABC transporter APP_09180 PF00326 Prolyl oligopeptidase family APP_09190 PF10763 Protein of unknown function (DUF2584) APP_09230 PF01293 Phosphoenolpyruvate carboxykinase APP_09240 PF00438 S-adenosylmethionine synthetase, N-terminal domain APP_09240 PF02772 S-adenosylmethionine synthetase, central domain APP_09240 PF02773 S-adenosylmethionine synthetase, C-terminal domain APP_09250 PF01569 PAP2 superfamily APP_09260 PF00132 Bacterial transferase hexapeptide (six repeats) APP_09270 PF12146 Serine aminopeptidase, S33 APP_09280 PF10776 Protein of unknown function (DUF2600) APP_09290 PF06962 Putative rRNA methylase APP_09300 PF04055 Radical SAM superfamily APP_09300 PF16199 Radical_SAM C-terminal domain APP_09310 PF10732 Protein of unknown function (DUF2524) APP_09330 PF00392 Bacterial regulatory proteins, gntR family APP_09340 PF00534 Glycosyl transferases group 1 APP_09340 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase APP_09350 PF09334 tRNA synthetases class I (M) APP_09350 PF13603 Leucyl-tRNA synthetase, Domain 2 APP_09350 PF00133 tRNA synthetases class I (I, L, M and V) APP_09350 PF08264 Anticodon-binding domain of tRNA APP_09360 PF00581 Rhodanese-like domain APP_09370 PF10957 Sporulation protein Cse60 APP_09380 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APP_09380 PF10414 Sirohaem synthase dimerisation region APP_09380 PF14824 Sirohaem biosynthesis protein central APP_09420 PF14667 Polysaccharide biosynthesis C-terminal domain APP_09420 PF01943 Polysaccharide biosynthesis protein APP_09430 PF01479 S4 domain APP_09430 PF00849 RNA pseudouridylate synthase APP_09440 PF08220 DeoR-like helix-turn-helix domain APP_09460 PF01609 Transposase DDE domain APP_09500 PF00860 Permease family APP_09510 PF01546 Peptidase family M20/M25/M40 APP_09520 PF00893 Small Multidrug Resistance protein APP_09530 PF00893 Small Multidrug Resistance protein APP_09540 PF00291 Pyridoxal-phosphate dependent enzyme APP_09550 PF02834 LigT like Phosphoesterase APP_09560 PF03788 LrgA family APP_09570 PF04172 LrgB-like family APP_09590 PF01636 Phosphotransferase enzyme family APP_09600 PF14165 YtzH-like protein APP_09610 PF02390 Putative methyltransferase APP_09630 PF03413 Peptidase propeptide and YPEB domain APP_09640 PF05343 M42 glutamyl aminopeptidase APP_09650 PF01931 Protein of unknown function DUF84 APP_09660 PF00085 Thioredoxin APP_09670 PF07285 Protein of unknown function (DUF1444) APP_09680 PF14794 Domain of unknown function (DUF4479) APP_09680 PF01588 Putative tRNA binding domain APP_09690 PF03606 C4-dicarboxylate anaerobic carrier APP_09700 PF01274 Malate synthase APP_09710 PF00463 Isocitrate lyase family APP_09720 PF08858 IDEAL domain APP_09730 PF06338 ComK protein APP_09750 PF09335 SNARE associated Golgi protein APP_09760 PF10502 Signal peptidase, peptidase S26 APP_09770 PF12705 PD-(D/E)XK nuclease superfamily APP_09780 PF13361 UvrD-like helicase C-terminal domain APP_09780 PF12705 PD-(D/E)XK nuclease superfamily APP_09780 PF00580 UvrD/REP helicase N-terminal domain APP_09790 PF00149 Calcineurin-like phosphoesterase APP_09790 PF12320 Type 5 capsule protein repressor C-terminal domain APP_09800 PF13476 AAA domain APP_09810 PF10676 Spore germination protein gerPA/gerPF APP_09840 PF10737 Spore germination protein GerPC APP_09850 PF10803 Spore germination GerPB APP_09860 PF10676 Spore germination protein gerPA/gerPF APP_09870 PF02082 Transcriptional regulator APP_09880 PF10055 Uncharacterized small protein (DUF2292) APP_09900 PF00528 Binding-protein-dependent transport system inner membrane component APP_09910 PF00528 Binding-protein-dependent transport system inner membrane component APP_09920 PF17850 CysA C-terminal regulatory domain APP_09920 PF12857 TOBE-like domain APP_09920 PF00005 ABC transporter APP_09930 PF09084 NMT1/THI5 like APP_09940 PF00296 Luciferase-like monooxygenase APP_09950 PF00528 Binding-protein-dependent transport system inner membrane component APP_09960 PF00005 ABC transporter APP_09990 PF01026 TatD related DNase APP_10000 PF01557 Fumarylacetoacetate (FAA) hydrolase family APP_10010 PF07457 Protein of unknown function (DUF1516) APP_10040 PF10920 Protein of unknown function (DUF2705) APP_10050 PF00005 ABC transporter APP_10080 PF00733 Asparagine synthase APP_10080 PF13537 Glutamine amidotransferase domain APP_10100 PF16657 Maltogenic Amylase, C-terminal domain APP_10100 PF00128 Alpha amylase, catalytic domain APP_10100 PF02903 Alpha amylase, N-terminal ig-like domain APP_10120 PF10282 Lactonase, 7-bladed beta-propeller APP_10130 PF00149 Calcineurin-like phosphoesterase APP_10140 PF00005 ABC transporter APP_10160 PF01609 Transposase DDE domain APP_10210 PF00664 ABC transporter transmembrane region APP_10210 PF00005 ABC transporter APP_10230 PF00005 ABC transporter APP_10270 PF00809 Pterin binding enzyme APP_10270 PF02965 Vitamin B12 dependent methionine synthase, activation domain APP_10270 PF02607 B12 binding domain APP_10270 PF02310 B12 binding domain APP_10270 PF02574 Homocysteine S-methyltransferase APP_10280 PF02219 Methylenetetrahydrofolate reductase APP_10280 PF02574 Homocysteine S-methyltransferase APP_10290 PF04461 Protein of unknown function (DUF520) APP_10320 PF02645 Uncharacterised protein, DegV family COG1307 APP_10350 PF00326 Prolyl oligopeptidase family APP_10360 PF01883 Iron-sulfur cluster assembly protein APP_10370 PF02774 Semialdehyde dehydrogenase, dimerisation domain APP_10370 PF01118 Semialdehyde dehydrogenase, NAD binding domain APP_10380 PF01960 ArgJ family APP_10390 PF00696 Amino acid kinase family APP_10400 PF00202 Aminotransferase class-III APP_10410 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain APP_10410 PF00117 Glutamine amidotransferase class-I APP_10420 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APP_10420 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain APP_10430 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APP_10430 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APP_10440 PF14168 YjzC-like protein APP_10450 PF02861 Clp amino terminal domain, pathogenicity island component APP_10450 PF00004 ATPase family associated with various cellular activities (AAA) APP_10450 PF10431 C-terminal, D2-small domain, of ClpB protein APP_10450 PF07724 AAA domain (Cdc48 subfamily) APP_10450 PF17871 AAA lid domain APP_10490 PF02608 ABC transporter substrate-binding protein PnrA-like APP_10510 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APP_10510 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APP_10520 PF00109 Beta-ketoacyl synthase, N-terminal domain APP_10520 PF02801 Beta-ketoacyl synthase, C-terminal domain APP_10530 PF10026 Predicted Zn-dependent protease (DUF2268) APP_10540 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APP_10550 PF12227 Protein of unknown function (DUF3603) APP_10560 PF00579 tRNA synthetases class I (W and Y) APP_10580 PF03960 ArsC family APP_10590 PF03741 Integral membrane protein TerC family APP_10600 PF05389 Negative regulator of genetic competence (MecA) APP_10610 PF13091 PLD-like domain APP_10610 PF13396 Phospholipase_D-nuclease N-terminal APP_10620 PF06054 Competence protein CoiA-like family APP_10630 PF08439 Oligopeptidase F APP_10630 PF01432 Peptidase family M3 APP_10650 PF01152 Bacterial-like globin APP_10660 PF01464 Transglycosylase SLT domain APP_10670 PF01928 CYTH domain APP_10690 PF04607 Region found in RelA / SpoT proteins APP_10700 PF01513 ATP-NAD kinase APP_10710 PF00849 RNA pseudouridylate synthase APP_10720 PF01769 Divalent cation transporter APP_10720 PF03448 MgtE intracellular N domain APP_10720 PF00571 CBS domain APP_10730 PF02080 TrkA-C domain APP_10730 PF02254 TrkA-N domain APP_10730 PF00999 Sodium/hydrogen exchanger family APP_10740 PF02581 Thiamine monophosphate synthase APP_10750 PF01266 FAD dependent oxidoreductase APP_10760 PF02597 ThiS family APP_10770 PF05690 Thiazole biosynthesis protein ThiG APP_10780 PF00899 ThiF family APP_10790 PF08543 Phosphomethylpyrimidine kinase APP_10820 PF07098 Protein of unknown function (DUF1360) APP_10880 PF14069 Stage VI sporulation protein F APP_10900 PF04239 Protein of unknown function (DUF421) APP_10910 PF13673 Acetyltransferase (GNAT) domain APP_10930 PF00756 Putative esterase APP_10940 PF00005 ABC transporter APP_10960 PF09084 NMT1/THI5 like APP_10980 PF01053 Cys/Met metabolism PLP-dependent enzyme APP_10990 PF01053 Cys/Met metabolism PLP-dependent enzyme APP_11000 PF16868 NMT1-like family APP_11110 PF06463 Molybdenum Cofactor Synthesis C APP_11110 PF04055 Radical SAM superfamily APP_11120 PF10114 Sensory domain found in PocR APP_11120 PF12833 Helix-turn-helix domain APP_11130 PF13478 XdhC Rossmann domain APP_11130 PF02625 XdhC and CoxI family APP_11140 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain APP_11140 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APP_11160 PF03450 CO dehydrogenase flavoprotein C-terminal domain APP_11160 PF00941 FAD binding domain in molybdopterin dehydrogenase APP_11170 PF01799 [2Fe-2S] binding domain APP_11170 PF00111 2Fe-2S iron-sulfur cluster binding domain APP_11180 PF13193 AMP-binding enzyme C-terminal domain APP_11180 PF00501 AMP-binding enzyme APP_11190 PF00378 Enoyl-CoA hydratase/isomerase APP_11200 PF00083 Sugar (and other) transporter APP_11200 PF07690 Major Facilitator Superfamily APP_11290 PF13005 zinc-finger binding domain of transposase IS66 APP_11290 PF13817 IS66 C-terminal element APP_11290 PF13007 Transposase C of IS166 homeodomain APP_11290 PF03050 Transposase IS66 family APP_11330 PF18593 CdiI immunity protein APP_11350 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 APP_11360 PF00367 phosphotransferase system, EIIB APP_11360 PF02378 Phosphotransferase system, EIIC APP_11370 PF16657 Maltogenic Amylase, C-terminal domain APP_11370 PF00128 Alpha amylase, catalytic domain APP_11380 PF00392 Bacterial regulatory proteins, gntR family APP_11380 PF07702 UTRA domain APP_11430 PF13007 Transposase C of IS166 homeodomain APP_11430 PF13817 IS66 C-terminal element APP_11430 PF03050 Transposase IS66 family APP_11430 PF13005 zinc-finger binding domain of transposase IS66 APP_11450 PF13407 Periplasmic binding protein domain APP_11450 PF00356 Bacterial regulatory proteins, lacI family APP_11460 PF02378 Phosphotransferase system, EIIC APP_11460 PF00367 phosphotransferase system, EIIB APP_11470 PF00251 Glycosyl hydrolases family 32 N-terminal domain APP_11470 PF08244 Glycosyl hydrolases family 32 C terminal APP_11480 PF00294 pfkB family carbohydrate kinase APP_11490 PF13276 HTH-like domain APP_11490 PF13333 Integrase core domain APP_11490 PF00665 Integrase core domain APP_11510 PF00893 Small Multidrug Resistance protein APP_11520 PF02668 Taurine catabolism dioxygenase TauD, TfdA family APP_11530 PF00005 ABC transporter APP_11540 PF04069 Substrate binding domain of ABC-type glycine betaine transport system APP_11550 PF00528 Binding-protein-dependent transport system inner membrane component APP_11570 PF00202 Aminotransferase class-III APP_11590 PF02632 BioY family APP_11610 PF03773 Predicted permease APP_11630 PF13673 Acetyltransferase (GNAT) domain APP_11630 PF04229 GrpB protein APP_11640 PF00692 dUTPase APP_11650 PF07683 Cobalamin synthesis protein cobW C-terminal domain APP_11650 PF02492 CobW/HypB/UreG, nucleotide-binding domain APP_11690 PF01965 DJ-1/PfpI family APP_11700 PF17853 GGDEF-like domain APP_11700 PF05651 Putative sugar diacid recognition APP_11700 PF13556 PucR C-terminal helix-turn-helix domain APP_11710 PF02913 FAD linked oxidases, C-terminal domain APP_11710 PF01565 FAD binding domain APP_11720 PF13183 4Fe-4S dicluster domain APP_11720 PF02754 Cysteine-rich domain APP_11730 PF00085 Thioredoxin APP_11810 PF00271 Helicase conserved C-terminal domain APP_11810 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) APP_11810 PF04851 Type III restriction enzyme, res subunit APP_11810 PF08463 EcoEI R protein C-terminal APP_11820 PF02384 N-6 DNA Methylase APP_11830 PF01420 Type I restriction modification DNA specificity domain APP_11840 PF00171 Aldehyde dehydrogenase family APP_11890 PF05368 NmrA-like family APP_11970 PF02743 Cache domain APP_11970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APP_11970 PF00672 HAMP domain APP_12000 PF02384 N-6 DNA Methylase APP_12040 PF00664 ABC transporter transmembrane region APP_12040 PF00005 ABC transporter APP_12050 PF00005 ABC transporter APP_12050 PF00664 ABC transporter transmembrane region APP_12060 PF00664 ABC transporter transmembrane region APP_12060 PF00005 ABC transporter APP_12070 PF02322 Cytochrome bd terminal oxidase subunit II APP_12080 PF01654 Cytochrome bd terminal oxidase subunit I APP_12090 PF11514 Protein of unknown function (DUF3219) APP_12100 PF00005 ABC transporter APP_12130 PF02634 FdhD/NarQ family APP_12140 PF12838 4Fe-4S dicluster domain APP_12140 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APP_12140 PF00384 Molybdopterin oxidoreductase APP_12140 PF01568 Molydopterin dinucleotide binding domain APP_12140 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region APP_12150 PF07849 Protein of unknown function (DUF1641) APP_12160 PF00183 Hsp90 protein APP_12170 PF00149 Calcineurin-like phosphoesterase APP_12200 PF02447 GntP family permease APP_12220 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase APP_12220 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APP_12230 PF00392 Bacterial regulatory proteins, gntR family APP_12230 PF07729 FCD domain APP_12240 PF07690 Major Facilitator Superfamily APP_12250 PF01494 FAD binding domain APP_12260 PF01614 Bacterial transcriptional regulator APP_12260 PF09339 IclR helix-turn-helix domain APP_12270 PF07883 Cupin domain APP_12280 PF01557 Fumarylacetoacetate (FAA) hydrolase family APP_12290 PF03061 Thioesterase superfamily APP_12300 PF13193 AMP-binding enzyme C-terminal domain APP_12300 PF00501 AMP-binding enzyme APP_12320 PF00005 ABC transporter APP_12380 PF02687 FtsX-like permease family APP_12380 PF00005 ABC transporter APP_12380 PF12704 MacB-like periplasmic core domain APP_12430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APP_12460 PF01381 Helix-turn-helix APP_12470 PF01614 Bacterial transcriptional regulator APP_12470 PF09339 IclR helix-turn-helix domain APP_12480 PF01380 SIS domain APP_12500 PF01645 Conserved region in glutamate synthase APP_12510 PF00120 Glutamine synthetase, catalytic domain APP_12520 PF01266 FAD dependent oxidoreductase APP_12530 PF00909 Ammonium Transporter Family APP_12540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APP_12540 PF02770 Acyl-CoA dehydrogenase, middle domain APP_12540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APP_12570 PF00175 Oxidoreductase NAD-binding domain APP_12570 PF00111 2Fe-2S iron-sulfur cluster binding domain APP_12570 PF00970 Oxidoreductase FAD-binding domain APP_12630 PF01053 Cys/Met metabolism PLP-dependent enzyme APP_12640 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain APP_12640 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APP_12640 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APP_12650 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APP_12650 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APP_12660 PF02803 Thiolase, C-terminal domain APP_12660 PF00108 Thiolase, N-terminal domain APP_12670 PF00171 Aldehyde dehydrogenase family APP_12680 PF00378 Enoyl-CoA hydratase/isomerase APP_12700 PF00753 Metallo-beta-lactamase superfamily APP_12700 PF16123 Hydroxyacylglutathione hydrolase C-terminus APP_12720 PF01883 Iron-sulfur cluster assembly protein APP_12750 PF00378 Enoyl-CoA hydratase/isomerase APP_12760 PF00378 Enoyl-CoA hydratase/isomerase APP_12770 PF00501 AMP-binding enzyme APP_12770 PF13193 AMP-binding enzyme C-terminal domain APP_12790 PF13193 AMP-binding enzyme C-terminal domain APP_12790 PF00501 AMP-binding enzyme APP_12800 PF01979 Amidohydrolase family APP_12800 PF13382 Adenine deaminase C-terminal domain APP_12820 PF00392 Bacterial regulatory proteins, gntR family APP_12830 PF00005 ABC transporter APP_12850 PF04542 Sigma-70 region 2 APP_12850 PF08281 Sigma-70, region 4 APP_12870 PF01063 Amino-transferase class IV APP_12900 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APP_12910 PF04238 Protein of unknown function (DUF420) APP_12920 PF00582 Universal stress protein family APP_12930 PF01522 Polysaccharide deacetylase APP_12930 PF13739 Deacetylase PdaC APP_12930 PF11738 Protein of unknown function (DUF3298) APP_12940 PF07992 Pyridine nucleotide-disulphide oxidoreductase APP_12950 PF07486 Cell Wall Hydrolase APP_13000 PF07992 Pyridine nucleotide-disulphide oxidoreductase APP_13020 PF07561 Domain of Unknown Function (DUF1540) APP_13030 PF05036 Sporulation related domain APP_13030 PF01520 N-acetylmuramoyl-L-alanine amidase APP_13040 PF01497 Periplasmic binding protein APP_13050 PF01032 FecCD transport family APP_13060 PF00005 ABC transporter APP_13070 PF03186 CobD/Cbib protein APP_13080 PF00155 Aminotransferase class I and II APP_13090 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase APP_13100 PF07685 CobB/CobQ-like glutamine amidotransferase domain APP_13110 PF02654 Cobalamin-5-phosphate synthase APP_13170 PF00571 CBS domain APP_13170 PF03471 Transporter associated domain APP_13170 PF01595 Cyclin M transmembrane N-terminal domain APP_13180 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APP_13190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APP_13230 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) APP_13240 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APP_13240 PF00361 Proton-conducting membrane transporter APP_13250 PF10057 Uncharacterized conserved protein (DUF2294) APP_13260 PF13840 ACT domain APP_13260 PF00696 Amino acid kinase family APP_13270 PF02743 Cache domain APP_13270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APP_13270 PF00672 HAMP domain APP_13280 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APP_13290 PF01047 MarR family APP_13300 PF00563 EAL domain APP_13300 PF00990 Diguanylate cyclase, GGDEF domain APP_13300 PF03707 Bacterial signalling protein N terminal repeat APP_13310 PF01068 ATP dependent DNA ligase domain APP_13320 PF00475 Imidazoleglycerol-phosphate dehydratase APP_13330 PF02735 Ku70/Ku80 beta-barrel domain APP_13340 PF02416 mttA/Hcf106 family APP_13350 PF00269 Small, acid-soluble spore proteins, alpha/beta type APP_13360 PF00571 CBS domain APP_13360 PF00005 ABC transporter APP_13370 PF00528 Binding-protein-dependent transport system inner membrane component APP_13380 PF04069 Substrate binding domain of ABC-type glycine betaine transport system APP_13420 PF08876 Domain of unknown function (DUF1836) APP_13430 PF02386 Cation transport protein APP_13440 PF00905 Penicillin binding protein transpeptidase domain APP_13440 PF05223 NTF2-like N-terminal transpeptidase domain APP_13440 PF03717 Penicillin-binding Protein dimerisation domain APP_13470 PF02310 B12 binding domain APP_13470 PF04055 Radical SAM superfamily APP_13480 PF07729 FCD domain APP_13480 PF00392 Bacterial regulatory proteins, gntR family APP_13510 PF02754 Cysteine-rich domain APP_13520 PF11870 Domain of unknown function (DUF3390) APP_13520 PF13183 4Fe-4S dicluster domain APP_13520 PF02589 LUD domain APP_13530 PF02589 LUD domain APP_13540 PF01757 Acyltransferase family APP_13550 PF00512 His Kinase A (phospho-acceptor) domain APP_13550 PF13426 PAS domain APP_13550 PF00989 PAS fold APP_13550 PF13188 PAS domain APP_13550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APP_13560 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain APP_13560 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain APP_13570 PF05816 Toxic anion resistance protein (TelA) APP_13580 PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein APP_13590 PF01906 Putative heavy-metal-binding APP_13610 PF09388 Spo0E like sporulation regulatory protein APP_13620 PF02535 ZIP Zinc transporter APP_13640 PF02743 Cache domain APP_13640 PF00512 His Kinase A (phospho-acceptor) domain APP_13640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APP_13650 PF01047 MarR family APP_13660 PF13677 Membrane MotB of proton-channel complex MotA/MotB APP_13660 PF00691 OmpA family APP_13670 PF01618 MotA/TolQ/ExbB proton channel family APP_13680 PF17871 AAA lid domain APP_13680 PF07724 AAA domain (Cdc48 subfamily) APP_13680 PF00004 ATPase family associated with various cellular activities (AAA) APP_13680 PF10431 C-terminal, D2-small domain, of ClpB protein APP_13700 PF00149 Calcineurin-like phosphoesterase APP_13710 PF06508 Queuosine biosynthesis protein QueC APP_13720 PF01242 6-pyruvoyl tetrahydropterin synthase APP_13730 PF04055 Radical SAM superfamily APP_13740 PF14489 QueF-like protein APP_13750 PF14489 QueF-like protein APP_13760 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) APP_13790 PF03323 Bacillus/Clostridium GerA spore germination protein APP_13800 PF03845 Spore germination protein APP_13820 PF01943 Polysaccharide biosynthesis protein APP_13830 PF00578 AhpC/TSA family APP_13870 PF00565 Staphylococcal nuclease homologue APP_13880 PF00365 Phosphofructokinase APP_13920 PF01545 Cation efflux family APP_13920 PF16916 Dimerisation domain of Zinc Transporter APP_13930 PF03123 CAT RNA binding domain APP_13930 PF00874 PRD domain APP_13940 PF00367 phosphotransferase system, EIIB APP_13940 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 APP_13940 PF02378 Phosphotransferase system, EIIC APP_13950 PF00381 PTS HPr component phosphorylation site APP_13960 PF02896 PEP-utilising enzyme, TIM barrel domain APP_13960 PF05524 PEP-utilising enzyme, N-terminal APP_13960 PF00391 PEP-utilising enzyme, mobile domain APP_13970 PF02743 Cache domain APP_13970 PF00672 HAMP domain APP_13970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APP_13990 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APP_13990 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase APP_14000 PF00188 Cysteine-rich secretory protein family APP_14010 PF00905 Penicillin binding protein transpeptidase domain APP_14010 PF03717 Penicillin-binding Protein dimerisation domain APP_14020 PF00989 PAS fold APP_14020 PF08447 PAS fold APP_14020 PF00512 His Kinase A (phospho-acceptor) domain APP_14020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APP_14030 PF00155 Aminotransferase class I and II APP_14040 PF01544 CorA-like Mg2+ transporter protein APP_14070 PF00072 Response regulator receiver domain APP_14070 PF01584 CheW-like domain APP_14080 PF14177 YkyB-like protein APP_14090 PF01022 Bacterial regulatory protein, arsR family APP_14100 PF07690 Major Facilitator Superfamily APP_14110 PF00149 Calcineurin-like phosphoesterase APP_14110 PF10518 TAT (twin-arginine translocation) pathway signal sequence APP_14130 PF00563 EAL domain APP_14130 PF10388 EAL-domain associated signalling protein domain APP_14150 PF00005 ABC transporter APP_14160 PF01497 Periplasmic binding protein APP_14170 PF01032 FecCD transport family APP_14180 PF01032 FecCD transport family APP_14190 PF14156 Antirepressor AbbA APP_14210 PF07690 Major Facilitator Superfamily APP_14220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APP_14220 PF03466 LysR substrate binding domain APP_14230 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal APP_14230 PF00132 Bacterial transferase hexapeptide (six repeats) APP_14230 PF14602 Hexapeptide repeat of succinyl-transferase APP_14240 PF01546 Peptidase family M20/M25/M40 APP_14240 PF07687 Peptidase dimerisation domain APP_14250 PF00924 Mechanosensitive ion channel APP_14260 PF00578 AhpC/TSA family APP_14260 PF10417 C-terminal domain of 1-Cys peroxiredoxin APP_14270 PF00578 AhpC/TSA family APP_14290 PF07687 Peptidase dimerisation domain APP_14290 PF01546 Peptidase family M20/M25/M40 APP_14300 PF03070 TENA/THI-4/PQQC family APP_14310 PF03070 TENA/THI-4/PQQC family APP_14320 PF03070 TENA/THI-4/PQQC family APP_14340 PF00005 ABC transporter APP_14370 PF02653 Branched-chain amino acid transport system / permease component APP_14390 PF00005 ABC transporter APP_14390 PF12399 Branched-chain amino acid ATP-binding cassette transporter APP_14400 PF00005 ABC transporter APP_14410 PF00547 Urease, gamma subunit APP_14420 PF00699 Urease beta subunit APP_14430 PF00449 Urease alpha-subunit, N-terminal domain APP_14430 PF01979 Amidohydrolase family APP_14440 PF02814 UreE urease accessory protein, N-terminal domain APP_14440 PF05194 UreE urease accessory protein, C-terminal domain APP_14450 PF01730 UreF APP_14460 PF02492 CobW/HypB/UreG, nucleotide-binding domain APP_14470 PF01774 UreD urease accessory protein APP_14480 PF13386 Cytochrome C biogenesis protein transmembrane region APP_14490 PF00158 Sigma-54 interaction domain APP_14500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APP_14500 PF02770 Acyl-CoA dehydrogenase, middle domain APP_14500 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APP_14520 PF13193 AMP-binding enzyme C-terminal domain APP_14520 PF00501 AMP-binding enzyme APP_14530 PF01012 Electron transfer flavoprotein domain APP_14540 PF01012 Electron transfer flavoprotein domain APP_14540 PF00766 Electron transfer flavoprotein FAD-binding domain APP_14550 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APP_14550 PF02770 Acyl-CoA dehydrogenase, middle domain APP_14550 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APP_14560 PF02803 Thiolase, C-terminal domain APP_14560 PF00108 Thiolase, N-terminal domain APP_14570 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APP_14570 PF02770 Acyl-CoA dehydrogenase, middle domain APP_14570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APP_14590 PF13452 N-terminal half of MaoC dehydratase APP_14610 PF00108 Thiolase, N-terminal domain APP_14610 PF02803 Thiolase, C-terminal domain APP_14620 PF13193 AMP-binding enzyme C-terminal domain APP_14620 PF00501 AMP-binding enzyme APP_14630 PF02653 Branched-chain amino acid transport system / permease component APP_14640 PF11862 Domain of unknown function (DUF3382) APP_14640 PF02653 Branched-chain amino acid transport system / permease component APP_14650 PF00005 ABC transporter APP_14650 PF12399 Branched-chain amino acid ATP-binding cassette transporter APP_14660 PF00005 ABC transporter APP_14690 PF00005 ABC transporter APP_14700 PF01979 Amidohydrolase family APP_14720 PF02633 Creatinine amidohydrolase APP_14750 PF01979 Amidohydrolase family APP_14760 PF07969 Amidohydrolase family APP_14770 PF03358 NADPH-dependent FMN reductase APP_14780 PF13478 XdhC Rossmann domain APP_14780 PF02625 XdhC and CoxI family APP_14790 PF00941 FAD binding domain in molybdopterin dehydrogenase APP_14800 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain APP_14800 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APP_14810 PF01799 [2Fe-2S] binding domain APP_14810 PF00111 2Fe-2S iron-sulfur cluster binding domain APP_14820 PF13333 Integrase core domain APP_14820 PF00665 Integrase core domain APP_14850 PF00576 HIUase/Transthyretin family APP_14860 PF01014 Uricase APP_14860 PF09349 OHCU decarboxylase APP_14870 PF00860 Permease family APP_14880 PF13556 PucR C-terminal helix-turn-helix domain APP_14880 PF17853 GGDEF-like domain APP_14880 PF07905 Purine catabolism regulatory protein-like family APP_14890 PF01546 Peptidase family M20/M25/M40 APP_14900 PF00266 Aminotransferase class-V APP_14910 PF01979 Amidohydrolase family APP_14920 PF07690 Major Facilitator Superfamily APP_14930 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APP_14930 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APP_14940 PF12704 MacB-like periplasmic core domain APP_14940 PF00005 ABC transporter APP_14940 PF02687 FtsX-like permease family APP_14950 PF00005 ABC transporter APP_14950 PF12704 MacB-like periplasmic core domain APP_14950 PF02687 FtsX-like permease family APP_15010 PF17922 Tetracyclin repressor-like, C-terminal domain APP_15010 PF00440 Bacterial regulatory proteins, tetR family APP_15030 PF13276 HTH-like domain APP_15030 PF13333 Integrase core domain APP_15030 PF00665 Integrase core domain APP_15040 PF13333 Integrase core domain APP_15040 PF00665 Integrase core domain APP_15040 PF13276 HTH-like domain APP_15080 PF00455 DeoR C terminal sensor domain APP_15080 PF08220 DeoR-like helix-turn-helix domain APP_15090 PF00294 pfkB family carbohydrate kinase APP_15100 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APP_15100 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APP_15130 PF00665 Integrase core domain APP_15130 PF13333 Integrase core domain APP_15130 PF13276 HTH-like domain APP_15190 PF12833 Helix-turn-helix domain APP_15190 PF01497 Periplasmic binding protein APP_15200 PF01497 Periplasmic binding protein APP_15210 PF01032 FecCD transport family APP_15220 PF01032 FecCD transport family APP_15230 PF00756 Putative esterase APP_15240 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APP_15250 PF00528 Binding-protein-dependent transport system inner membrane component APP_15260 PF00528 Binding-protein-dependent transport system inner membrane component APP_15270 PF00005 ABC transporter APP_15270 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APP_15280 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APP_15280 PF00005 ABC transporter APP_15290 PF01554 MatE APP_15300 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APP_15300 PF07685 CobB/CobQ-like glutamine amidotransferase domain APP_15310 PF01329 Pterin 4 alpha carbinolamine dehydratase APP_15320 PF17853 GGDEF-like domain APP_15320 PF05651 Putative sugar diacid recognition APP_15320 PF13556 PucR C-terminal helix-turn-helix domain APP_15330 PF13382 Adenine deaminase C-terminal domain APP_15330 PF01979 Amidohydrolase family APP_15340 PF02417 Chromate transporter APP_15350 PF02417 Chromate transporter APP_15360 PF01037 Lrp/AsnC ligand binding domain APP_15360 PF13404 AsnC-type helix-turn-helix domain APP_15410 PF18755 Restriction Enzyme Adenine Methylase Associated APP_15410 PF01555 DNA methylase APP_15420 PF00704 Glycosyl hydrolases family 18 APP_15420 PF01476 LysM domain APP_15430 PF03190 Protein of unknown function, DUF255 APP_15440 PF03190 Protein of unknown function, DUF255 APP_15460 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal APP_15460 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal APP_15470 PF01613 Flavin reductase like domain APP_15480 PF01687 Riboflavin kinase APP_15480 PF06574 FAD synthetase APP_15500 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APP_15510 PF00561 alpha/beta hydrolase fold APP_15520 PF01361 Tautomerase enzyme APP_15530 PF00111 2Fe-2S iron-sulfur cluster binding domain APP_15530 PF00970 Oxidoreductase FAD-binding domain APP_15530 PF00175 Oxidoreductase NAD-binding domain APP_15550 PF00027 Cyclic nucleotide-binding domain APP_15550 PF00325 Bacterial regulatory proteins, crp family APP_15570 PF04893 Yip1 domain APP_15580 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APP_15590 PF00005 ABC transporter APP_15600 PF02687 FtsX-like permease family APP_15600 PF12704 MacB-like periplasmic core domain APP_15610 PF01098 Cell cycle protein APP_15640 PF02073 Thermophilic metalloprotease (M29) APP_15650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APP_15650 PF02770 Acyl-CoA dehydrogenase, middle domain APP_15650 PF08028 Acyl-CoA dehydrogenase, C-terminal domain APP_15660 PF07690 Major Facilitator Superfamily APP_15670 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment APP_15670 PF01297 Zinc-uptake complex component A periplasmic APP_15680 PF01925 Sulfite exporter TauE/SafE APP_15690 PF03466 LysR substrate binding domain APP_15690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APP_15700 PF02146 Sir2 family APP_15720 PF02080 TrkA-C domain APP_15720 PF02254 TrkA-N domain APP_15730 PF17770 Ribonuclease J C-terminal domain APP_15730 PF00753 Metallo-beta-lactamase superfamily APP_15730 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain APP_15760 PF01327 Polypeptide deformylase APP_15780 PF00676 Dehydrogenase E1 component APP_15790 PF02780 Transketolase, C-terminal domain APP_15790 PF02779 Transketolase, pyrimidine binding domain APP_15800 PF02817 e3 binding domain APP_15800 PF00364 Biotin-requiring enzyme APP_15800 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APP_15810 PF07992 Pyridine nucleotide-disulphide oxidoreductase APP_15810 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APP_15850 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain APP_15850 PF01276 Orn/Lys/Arg decarboxylase, major domain APP_15860 PF03060 Nitronate monooxygenase APP_15870 PF06335 Protein of unknown function (DUF1054) APP_15880 PF00459 Inositol monophosphatase family APP_15910 PF14036 YlaH-like protein APP_15920 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) APP_15930 PF02562 PhoH-like protein APP_15930 PF13638 PIN domain APP_15950 PF07408 Protein of unknown function (DUF1507) APP_15960 PF01098 Cell cycle protein APP_15970 PF00289 Biotin carboxylase, N-terminal domain APP_15970 PF00364 Biotin-requiring enzyme APP_15970 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APP_15970 PF00682 HMGL-like APP_15970 PF02436 Conserved carboxylase domain APP_15970 PF02785 Biotin carboxylase C-terminal domain APP_15980 PF00350 Dynamin family APP_15990 PF10752 Protein of unknown function (DUF2533) APP_16010 PF13456 Reverse transcriptase-like APP_16020 PF10782 Zinc-finger APP_16030 PF00313 'Cold-shock' DNA-binding domain APP_16040 PF00534 Glycosyl transferases group 1 APP_16040 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase APP_16050 PF04204 Homoserine O-succinyltransferase APP_16060 PF00255 Glutathione peroxidase APP_16070 PF08712 Scaffold protein Nfu/NifU N terminal APP_16070 PF13769 Virulence factor APP_16080 PF06491 Disulphide isomerase APP_16090 PF14005 YpjP-like protein APP_16100 PF04608 Phosphatidylglycerophosphatase A APP_16110 PF00303 Thymidylate synthase APP_16120 PF00186 Dihydrofolate reductase APP_16130 PF00291 Pyridoxal-phosphate dependent enzyme APP_16130 PF00585 C-terminal regulatory domain of Threonine dehydratase APP_16140 PF10751 Protein of unknown function (DUF2535) APP_16150 PF02645 Uncharacterised protein, DegV family COG1307 APP_16160 PF02630 SCO1/SenC APP_16170 PF13472 GDSL-like Lipase/Acylhydrolase family APP_16180 PF09911 Uncharacterized protein conserved in bacteria (DUF2140) APP_16190 PF17126 RsmF rRNA methyltransferase first C-terminal domain APP_16190 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF APP_16190 PF01189 16S rRNA methyltransferase RsmB/F APP_16200 PF17431 Uncharacterized YmpT-like APP_16210 PF07690 Major Facilitator Superfamily APP_16220 PF01625 Peptide methionine sulfoxide reductase APP_16220 PF01641 SelR domain APP_16250 PF04055 Radical SAM superfamily APP_16250 PF06968 Biotin and Thiamin Synthesis associated domain APP_16260 PF06855 YozE SAM-like fold APP_16280 PF00069 Protein kinase domain APP_16290 PF07070 SpoOM protein APP_16300 PF01569 PAP2 superfamily APP_16310 PF14191 YodL-like APP_16320 PF01048 Phosphorylase superfamily APP_16330 PF02557 D-alanyl-D-alanine carboxypeptidase APP_16340 PF17820 PDZ domain APP_16340 PF03572 Peptidase family S41 APP_16340 PF01471 Putative peptidoglycan binding domain APP_16370 PF00892 EamA-like transporter family APP_16390 PF08830 Protein of unknown function (DUF1806) APP_16400 PF02585 GlcNAc-PI de-N-acetylase APP_16410 PF00877 NlpC/P60 family APP_16410 PF01476 LysM domain APP_16430 PF00324 Amino acid permease APP_16440 PF07728 AAA domain (dynein-related subfamily) APP_16450 PF00092 von Willebrand factor type A domain APP_16460 PF16870 2-oxoglutarate dehydrogenase C-terminal APP_16460 PF16078 2-oxoglutarate dehydrogenase N-terminus APP_16460 PF02779 Transketolase, pyrimidine binding domain APP_16460 PF00676 Dehydrogenase E1 component APP_16470 PF00364 Biotin-requiring enzyme APP_16470 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APP_16470 PF02817 e3 binding domain APP_16490 PF01256 Carbohydrate kinase APP_16500 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APP_16500 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APP_16530 PF00171 Aldehyde dehydrogenase family APP_16540 PF11007 Spore coat associated protein JA (CotJA) APP_16550 PF12652 CotJB protein APP_16560 PF05067 Manganese containing catalase APP_16590 PF00005 ABC transporter APP_16590 PF03459 TOBE domain APP_16610 PF02334 Replication terminator protein APP_16650 PF09560 Sporulation protein YunB (Spo_YunB) APP_16680 PF03862 SpoVAC/SpoVAEB sporulation membrane protein APP_16690 PF07451 Stage V sporulation protein AD (SpoVAD) APP_16700 PF03862 SpoVAC/SpoVAEB sporulation membrane protein APP_16720 PF04239 Protein of unknown function (DUF421) APP_16730 PF07992 Pyridine nucleotide-disulphide oxidoreductase APP_16750 PF00920 Dehydratase family APP_16760 PF00474 Sodium:solute symporter family APP_16780 PF01625 Peptide methionine sulfoxide reductase APP_16810 PF01554 MatE APP_16840 PF07690 Major Facilitator Superfamily APP_16850 PF00440 Bacterial regulatory proteins, tetR family APP_16860 PF00873 AcrB/AcrD/AcrF family APP_16870 PF00753 Metallo-beta-lactamase superfamily APP_16900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APP_16930 PF00171 Aldehyde dehydrogenase family APP_16940 PF02583 Metal-sensitive transcriptional repressor APP_16950 PF00403 Heavy-metal-associated domain APP_16960 PF00403 Heavy-metal-associated domain APP_16980 PF08000 Bacterial PH domain APP_17000 PF13426 PAS domain APP_17000 PF13188 PAS domain APP_17000 PF00512 His Kinase A (phospho-acceptor) domain APP_17000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APP_17000 PF00989 PAS fold APP_17040 PF00072 Response regulator receiver domain APP_17040 PF04397 LytTr DNA-binding domain APP_17050 PF01966 HD domain APP_17100 PF07690 Major Facilitator Superfamily APP_17120 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain APP_17120 PF00056 lactate/malate dehydrogenase, NAD binding domain APP_17130 PF03473 MOSC domain APP_17130 PF03475 3-alpha domain APP_17170 PF03972 MmgE/PrpD family APP_17180 PF00285 Citrate synthase, C-terminal domain APP_17190 PF02541 Ppx/GppA phosphatase family APP_17200 PF17941 Polyphosphate kinase C-terminal domain 1 APP_17200 PF13090 Polyphosphate kinase C-terminal domain 2 APP_17200 PF02503 Polyphosphate kinase middle domain APP_17200 PF13089 Polyphosphate kinase N-terminal domain APP_17210 PF00248 Aldo/keto reductase family APP_17220 PF01266 FAD dependent oxidoreductase APP_17220 PF00355 Rieske [2Fe-2S] domain APP_17250 PF07694 5TMR of 5TMR-LYT APP_17250 PF13492 GAF domain APP_17250 PF06580 Histidine kinase APP_17250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APP_17260 PF04397 LytTr DNA-binding domain APP_17260 PF00072 Response regulator receiver domain APP_17270 PF02554 Carbon starvation protein CstA APP_17270 PF13722 5TM C-terminal transporter carbon starvation CstA APP_17280 PF00440 Bacterial regulatory proteins, tetR family APP_17290 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APP_17290 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APP_17300 PF01790 Prolipoprotein diacylglyceryl transferase APP_17310 PF04055 Radical SAM superfamily APP_17310 PF13186 Iron-sulfur cluster-binding domain APP_17340 PF13977 BetI-type transcriptional repressor, C-terminal APP_17340 PF00440 Bacterial regulatory proteins, tetR family APP_17360 PF01323 DSBA-like thioredoxin domain APP_17380 PF04542 Sigma-70 region 2 APP_17380 PF08281 Sigma-70, region 4 APP_17400 PF01047 MarR family APP_17410 PF03176 MMPL family APP_17420 PF01476 LysM domain APP_17420 PF00704 Glycosyl hydrolases family 18 APP_17440 PF00313 'Cold-shock' DNA-binding domain APP_17450 PF01751 Toprim domain APP_17450 PF01131 DNA topoisomerase APP_17460 PF13823 Alcohol dehydrogenase GroES-associated APP_17460 PF00107 Zinc-binding dehydrogenase APP_17460 PF08240 Alcohol dehydrogenase GroES-like domain APP_17470 PF02558 Ketopantoate reductase PanE/ApbA APP_17470 PF08546 Ketopantoate reductase PanE/ApbA C terminal APP_17520 PF07690 Major Facilitator Superfamily APP_17570 PF00487 Fatty acid desaturase APP_17580 PF07730 Histidine kinase APP_17590 PF00196 Bacterial regulatory proteins, luxR family APP_17590 PF00072 Response regulator receiver domain APP_17610 PF00753 Metallo-beta-lactamase superfamily APP_17610 PF00581 Rhodanese-like domain APP_17630 PF02583 Metal-sensitive transcriptional repressor APP_17640 PF01206 Sulfurtransferase TusA APP_17650 PF13686 DsrE/DsrF/DrsH-like family APP_17670 PF01206 Sulfurtransferase TusA APP_17670 PF00581 Rhodanese-like domain APP_17680 PF01925 Sulfite exporter TauE/SafE APP_17710 PF00465 Iron-containing alcohol dehydrogenase APP_17710 PF00171 Aldehyde dehydrogenase family APP_17740 PF02293 AmiS/UreI family transporter APP_17750 PF10431 C-terminal, D2-small domain, of ClpB protein APP_17750 PF07724 AAA domain (Cdc48 subfamily) APP_17770 PF00795 Carbon-nitrogen hydrolase APP_17780 PF00158 Sigma-54 interaction domain APP_17780 PF13188 PAS domain APP_17780 PF02954 Bacterial regulatory protein, Fis family APP_17800 PF02954 Bacterial regulatory protein, Fis family APP_17800 PF00158 Sigma-54 interaction domain APP_17800 PF13188 PAS domain APP_17810 PF03744 6-carboxyhexanoate--CoA ligase APP_17820 PF00202 Aminotransferase class-III APP_17830 PF00202 Aminotransferase class-III APP_17840 PF00155 Aminotransferase class I and II APP_17860 PF02954 Bacterial regulatory protein, Fis family APP_17860 PF00072 Response regulator receiver domain APP_17860 PF00158 Sigma-54 interaction domain APP_17900 PF00005 ABC transporter APP_17930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APP_17930 PF00672 HAMP domain APP_17930 PF02743 Cache domain APP_17940 PF01022 Bacterial regulatory protein, arsR family APP_17950 PF07853 Protein of unknown function (DUF1648) APP_17950 PF13630 SdpI/YhfL protein family APP_17970 PF00005 ABC transporter APP_17970 PF13732 Domain of unknown function (DUF4162) APP_17990 PF00440 Bacterial regulatory proteins, tetR family APP_17990 PF13977 BetI-type transcriptional repressor, C-terminal APP_18000 PF01758 Sodium Bile acid symporter family APP_18020 PF08378 Nuclease-related domain APP_18040 PF16326 ABC transporter C-terminal domain APP_18040 PF00005 ABC transporter APP_18040 PF12848 ABC transporter APP_18050 PF08241 Methyltransferase domain APP_18060 PF08241 Methyltransferase domain APP_18070 PF00005 ABC transporter APP_18080 PF00440 Bacterial regulatory proteins, tetR family APP_18090 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APP_18090 PF02770 Acyl-CoA dehydrogenase, middle domain APP_18090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APP_18100 PF13193 AMP-binding enzyme C-terminal domain APP_18100 PF00501 AMP-binding enzyme APP_18110 PF02785 Biotin carboxylase C-terminal domain APP_18110 PF00289 Biotin carboxylase, N-terminal domain APP_18110 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APP_18120 PF00364 Biotin-requiring enzyme APP_18130 PF00682 HMGL-like APP_18140 PF00378 Enoyl-CoA hydratase/isomerase APP_18150 PF01039 Carboxyl transferase domain APP_18210 PF05043 Mga helix-turn-helix domain APP_18210 PF00874 PRD domain APP_18210 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APP_18210 PF08279 HTH domain APP_18220 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APP_18230 PF00365 Phosphofructokinase APP_18250 PF03611 PTS system sugar-specific permease component APP_18270 PF01116 Fructose-bisphosphate aldolase class-II APP_18280 PF03459 TOBE domain APP_18280 PF00005 ABC transporter APP_18290 PF00528 Binding-protein-dependent transport system inner membrane component APP_18300 PF12727 PBP superfamily domain APP_18300 PF12728 Helix-turn-helix domain APP_18310 PF18389 TrmO C-terminal domain APP_18310 PF01980 tRNA-methyltransferase O APP_18330 PF00106 short chain dehydrogenase APP_18350 PF00296 Luciferase-like monooxygenase APP_18360 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APP_18360 PF02770 Acyl-CoA dehydrogenase, middle domain APP_18360 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APP_18370 PF03180 NLPA lipoprotein APP_18380 PF09383 NIL domain APP_18380 PF00005 ABC transporter APP_18390 PF00528 Binding-protein-dependent transport system inner membrane component APP_18400 PF01022 Bacterial regulatory protein, arsR family APP_18420 PF01758 Sodium Bile acid symporter family APP_18430 PF01758 Sodium Bile acid symporter family APP_18440 PF01451 Low molecular weight phosphotyrosine protein phosphatase APP_18450 PF00392 Bacterial regulatory proteins, gntR family APP_18450 PF00155 Aminotransferase class I and II APP_18460 PF01810 LysE type translocator APP_18470 PF00266 Aminotransferase class-V APP_18480 PF02515 CoA-transferase family III APP_18490 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APP_18490 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APP_18490 PF02770 Acyl-CoA dehydrogenase, middle domain APP_18550 PF03649 Uncharacterised protein family (UPF0014) APP_18560 PF00005 ABC transporter APP_18560 PF08402 TOBE domain APP_18570 PF01967 MoaC family APP_18590 PF02391 MoaE protein APP_18600 PF03205 Molybdopterin guanine dinucleotide synthesis protein B APP_18610 PF03453 MoeA N-terminal region (domain I and II) APP_18610 PF00994 Probable molybdopterin binding domain APP_18610 PF03454 MoeA C-terminal region (domain IV) APP_18620 PF12804 MobA-like NTP transferase domain APP_18630 PF00994 Probable molybdopterin binding domain APP_18650 PF04055 Radical SAM superfamily APP_18650 PF06463 Molybdenum Cofactor Synthesis C APP_18700 PF01883 Iron-sulfur cluster assembly protein APP_18720 PF04055 Radical SAM superfamily APP_18720 PF13186 Iron-sulfur cluster-binding domain APP_18730 PF00325 Bacterial regulatory proteins, crp family APP_18730 PF00027 Cyclic nucleotide-binding domain APP_18750 PF14256 YwiC-like protein APP_18760 PF04405 Domain of Unknown function (DUF542) APP_18760 PF01814 Hemerythrin HHE cation binding domain APP_18770 PF03989 DNA gyrase C-terminal domain, beta-propeller APP_18770 PF00521 DNA gyrase/topoisomerase IV, subunit A APP_18780 PF00204 DNA gyrase B APP_18780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APP_18780 PF00986 DNA gyrase B subunit, carboxyl terminus APP_18780 PF01751 Toprim domain APP_18790 PF13380 CoA binding domain APP_18800 PF02660 Glycerol-3-phosphate acyltransferase APP_18810 PF00929 Exonuclease APP_18810 PF13307 Helicase C-terminal domain APP_18810 PF04851 Type III restriction enzyme, res subunit APP_18830 PF00909 Ammonium Transporter Family APP_18840 PF09587 Bacterial capsule synthesis protein PGA_cap APP_18850 PF01521 Iron-sulphur cluster biosynthesis APP_18870 PF03061 Thioesterase superfamily APP_18890 PF08177 Small acid-soluble spore protein N family APP_18910 PF00578 AhpC/TSA family APP_18920 PF00694 Aconitase C-terminal domain APP_18920 PF00330 Aconitase family (aconitate hydratase) APP_18940 PF08179 Small acid-soluble spore protein P family APP_18960 PF11084 Protein of unknown function (DUF2621) APP_18970 PF07301 Protein of unknown function (DUF1453) APP_18980 PF00072 Response regulator receiver domain APP_18990 PF02683 Cytochrome C biogenesis protein transmembrane region APP_19010 PF03672 Uncharacterised protein family (UPF0154) APP_19020 PF10747 Sporulation inhibitor of replication protein SirA APP_19030 PF00456 Transketolase, thiamine diphosphate binding domain APP_19030 PF02779 Transketolase, pyrimidine binding domain APP_19030 PF02780 Transketolase, C-terminal domain APP_19040 PF05979 Bacterial protein of unknown function (DUF896) APP_19050 PF00239 Resolvase, N terminal domain APP_19060 PF01476 LysM domain APP_19070 PF01726 LexA DNA binding domain APP_19070 PF00717 Peptidase S24-like APP_19080 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain APP_19080 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase APP_19090 PF01553 Acyltransferase APP_19100 PF03641 Possible lysine decarboxylase APP_19110 PF00248 Aldo/keto reductase family APP_19120 PF01738 Dienelactone hydrolase family APP_19130 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APP_19150 PF00356 Bacterial regulatory proteins, lacI family APP_19150 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family APP_19200 PF07730 Histidine kinase APP_19200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APP_19210 PF00072 Response regulator receiver domain APP_19210 PF00196 Bacterial regulatory proteins, luxR family APP_19220 PF13344 Haloacid dehalogenase-like hydrolase APP_19220 PF00293 NUDIX domain APP_19230 PF02743 Cache domain APP_19230 PF00672 HAMP domain APP_19230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APP_19240 PF00563 EAL domain APP_19240 PF12792 CSS motif domain associated with EAL APP_19250 PF01381 Helix-turn-helix APP_19300 PF05145 Transition state regulatory protein AbrB APP_19310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APP_19310 PF03466 LysR substrate binding domain APP_19360 PF00171 Aldehyde dehydrogenase family APP_19370 PF00486 Transcriptional regulatory protein, C terminal APP_19370 PF00072 Response regulator receiver domain APP_19380 PF00512 His Kinase A (phospho-acceptor) domain APP_19380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APP_19380 PF00672 HAMP domain APP_19400 PF01891 Cobalt uptake substrate-specific transmembrane region APP_19430 PF02515 CoA-transferase family III APP_19440 PF00378 Enoyl-CoA hydratase/isomerase APP_19450 PF00392 Bacterial regulatory proteins, gntR family APP_19450 PF07729 FCD domain APP_19480 PF01032 FecCD transport family APP_19490 PF01032 FecCD transport family APP_19540 PF13005 zinc-finger binding domain of transposase IS66 APP_19540 PF03050 Transposase IS66 family APP_19540 PF13817 IS66 C-terminal element APP_19540 PF13007 Transposase C of IS166 homeodomain APP_19580 PF00664 ABC transporter transmembrane region APP_19580 PF00005 ABC transporter APP_19600 PF13005 zinc-finger binding domain of transposase IS66 APP_19600 PF03050 Transposase IS66 family APP_19600 PF13007 Transposase C of IS166 homeodomain APP_19600 PF13817 IS66 C-terminal element APP_19670 PF13817 IS66 C-terminal element APP_19670 PF03050 Transposase IS66 family APP_19670 PF13007 Transposase C of IS166 homeodomain APP_19670 PF13005 zinc-finger binding domain of transposase IS66 APP_19710 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APP_19710 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APP_19720 PF00356 Bacterial regulatory proteins, lacI family APP_19740 PF13333 Integrase core domain APP_19740 PF00665 Integrase core domain APP_19740 PF13276 HTH-like domain APP_19750 PF13276 HTH-like domain APP_19750 PF00665 Integrase core domain APP_19750 PF13333 Integrase core domain APP_19760 PF00171 Aldehyde dehydrogenase family APP_19770 PF00392 Bacterial regulatory proteins, gntR family APP_19770 PF07729 FCD domain APP_19780 PF00701 Dihydrodipicolinate synthetase family APP_19790 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus APP_19790 PF08666 SAF domain APP_19800 PF03786 D-mannonate dehydratase (UxuA) APP_19810 PF07690 Major Facilitator Superfamily APP_19820 PF08125 Mannitol dehydrogenase C-terminal domain APP_19820 PF01232 Mannitol dehydrogenase Rossmann domain APP_19830 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APP_19840 PF08279 HTH domain APP_19840 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APP_19840 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APP_19840 PF05043 Mga helix-turn-helix domain APP_19840 PF00874 PRD domain APP_19850 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APP_19850 PF02378 Phosphotransferase system, EIIC APP_19870 PF00465 Iron-containing alcohol dehydrogenase APP_19880 PF02954 Bacterial regulatory protein, Fis family APP_19880 PF13426 PAS domain APP_19880 PF00158 Sigma-54 interaction domain APP_19890 PF00248 Aldo/keto reductase family APP_19900 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APP_19900 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APP_19900 PF01842 ACT domain APP_19910 PF00289 Biotin carboxylase, N-terminal domain APP_19910 PF02785 Biotin carboxylase C-terminal domain APP_19910 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APP_19920 PF00364 Biotin-requiring enzyme APP_19930 PF02436 Conserved carboxylase domain APP_19930 PF00364 Biotin-requiring enzyme APP_19930 PF00682 HMGL-like APP_19940 PF14535 AMP-binding enzyme C-terminal domain APP_19940 PF00501 AMP-binding enzyme APP_19950 PF01614 Bacterial transcriptional regulator APP_19950 PF09339 IclR helix-turn-helix domain APP_19960 PF01614 Bacterial transcriptional regulator APP_19960 PF09339 IclR helix-turn-helix domain APP_20020 PF13005 zinc-finger binding domain of transposase IS66 APP_20020 PF03050 Transposase IS66 family APP_20020 PF13817 IS66 C-terminal element APP_20020 PF13007 Transposase C of IS166 homeodomain APP_20080 PF00665 Integrase core domain APP_20080 PF13276 HTH-like domain APP_20080 PF13333 Integrase core domain APP_20200 PF03951 Glutamine synthetase, beta-Grasp domain APP_20200 PF00120 Glutamine synthetase, catalytic domain APP_20210 PF13411 MerR HTH family regulatory protein APP_20220 PF06838 Methionine gamma-lyase APP_20230 PF01926 50S ribosome-binding GTPase APP_20230 PF13167 GTP-binding GTPase N-terminal APP_20230 PF16360 GTP-binding GTPase Middle Region APP_20250 PF00004 ATPase family associated with various cellular activities (AAA) APP_20250 PF17866 AAA lid domain APP_20260 PF17209 Hfq protein APP_20290 PF08676 MutL C terminal dimerisation domain APP_20290 PF01119 DNA mismatch repair protein, C-terminal domain APP_20300 PF00488 MutS domain V APP_20300 PF01624 MutS domain I APP_20300 PF05188 MutS domain II APP_20300 PF05192 MutS domain III APP_20300 PF05190 MutS family domain IV APP_20310 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APP_20320 PF10628 Outer spore coat protein E (CotE) APP_20330 PF06133 Control of competence regulator ComK, YlbF/YmcA APP_20340 PF04055 Radical SAM superfamily APP_20340 PF01938 TRAM domain APP_20340 PF00919 Uncharacterized protein family UPF0004 APP_20350 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APP_20360 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II APP_20360 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase APP_20360 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg APP_20370 PF04232 Stage V sporulation protein S (SpoVS) APP_20380 PF13277 YmdB-like protein APP_20390 PF12072 Domain of unknown function (DUF3552) APP_20390 PF00013 KH domain APP_20390 PF01966 HD domain APP_20400 PF00154 recA bacterial DNA recombination protein APP_20410 PF00994 Probable molybdopterin binding domain APP_20410 PF18146 Damage-inducible protein CinA KH domain APP_20410 PF02464 Competence-damaged protein APP_20420 PF01066 CDP-alcohol phosphatidyltransferase APP_20430 PF13464 Domain of unknown function (DUF4115) APP_20440 PF11868 Protein of unknown function (DUF3388) APP_20450 PF11588 Protein of unknown function (DUF3243) APP_20470 PF05193 Peptidase M16 inactive domain APP_20470 PF00675 Insulinase (Peptidase family M16) APP_20480 PF05193 Peptidase M16 inactive domain APP_20520 PF09397 Ftsk gamma domain APP_20520 PF01580 FtsK/SpoIIIE family APP_20520 PF17854 FtsK alpha domain APP_20530 PF14035 YlzJ-like protein APP_20540 PF00574 Clp protease APP_20550 PF17770 Ribonuclease J C-terminal domain APP_20550 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain APP_20550 PF00753 Metallo-beta-lactamase superfamily APP_20560 PF00701 Dihydrodipicolinate synthetase family APP_20570 PF00696 Amino acid kinase family APP_20570 PF13840 ACT domain APP_20580 PF01118 Semialdehyde dehydrogenase, NAD binding domain APP_20580 PF02774 Semialdehyde dehydrogenase, dimerisation domain APP_20590 PF02441 Flavoprotein APP_20600 PF01262 Alanine dehydrogenase/PNT, C-terminal domain APP_20600 PF16924 Dipicolinate synthase subunit A N-terminal domain APP_20610 PF05239 PRC-barrel domain APP_20620 PF00675 Insulinase (Peptidase family M16) APP_20620 PF05193 Peptidase M16 inactive domain APP_20630 PF01522 Polysaccharide deacetylase APP_20640 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain APP_20640 PF03725 3' exoribonuclease family, domain 2 APP_20640 PF01138 3' exoribonuclease family, domain 1 APP_20640 PF00013 KH domain APP_20640 PF00575 S1 RNA binding domain APP_20650 PF00312 Ribosomal protein S15 APP_20660 PF06574 FAD synthetase APP_20660 PF01687 Riboflavin kinase APP_20670 PF16198 tRNA pseudouridylate synthase B C-terminal domain APP_20670 PF01509 TruB family pseudouridylate synthase (N terminal domain) APP_20680 PF02033 Ribosome-binding factor A APP_20690 PF04456 Protein of unknown function (DUF503) APP_20700 PF11987 Translation-initiation factor 2 APP_20700 PF00009 Elongation factor Tu GTP binding domain APP_20700 PF04760 Translation initiation factor IF-2, N-terminal region APP_20710 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family APP_20720 PF04296 Protein of unknown function (DUF448) APP_20730 PF13184 NusA-like KH domain APP_20730 PF08529 NusA N-terminal domain APP_20730 PF00575 S1 RNA binding domain APP_20740 PF17384 RimP C-terminal SH3 domain APP_20740 PF02576 RimP N-terminal domain APP_20750 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APP_20750 PF02811 PHP domain APP_20750 PF00929 Exonuclease APP_20750 PF14480 DNA polymerase III polC-type N-terminus I APP_20750 PF14579 Helix-hairpin-helix motif APP_20750 PF11490 DNA polymerase III polC-type N-terminus II APP_20750 PF07733 Bacterial DNA polymerase III alpha NTPase domain APP_20760 PF03129 Anticodon binding domain APP_20760 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APP_20760 PF04073 Aminoacyl-tRNA editing domain APP_20770 PF13180 PDZ domain APP_20770 PF02163 Peptidase family M50 APP_20780 PF13288 DXP reductoisomerase C-terminal domain APP_20780 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase APP_20780 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain APP_20800 PF01255 Putative undecaprenyl diphosphate synthase APP_20810 PF01765 Ribosome recycling factor APP_20820 PF00696 Amino acid kinase family APP_20830 PF00889 Elongation factor TS APP_20840 PF00318 Ribosomal protein S2 APP_20860 PF04539 Sigma-70 region 3 APP_20860 PF04545 Sigma-70, region 4 APP_20860 PF04542 Sigma-70 region 2 APP_20870 PF03975 CheD chemotactic sensory transduction APP_20880 PF04509 CheC-like family APP_20890 PF01584 CheW-like domain APP_20900 PF02895 Signal transducing histidine kinase, homodimeric domain APP_20900 PF01584 CheW-like domain APP_20900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APP_20900 PF01627 Hpt domain APP_20900 PF07194 P2 response regulator binding domain APP_20910 PF00072 Response regulator receiver domain APP_20910 PF01339 CheB methylesterase APP_20920 PF10609 NUBPL iron-transfer P-loop NTPase APP_20930 PF00448 SRP54-type protein, GTPase domain APP_20940 PF00771 FHIPEP family APP_20950 PF01312 FlhB HrpN YscU SpaS Family APP_20960 PF01311 Bacterial export proteins, family 1 APP_20970 PF01313 Bacterial export proteins, family 3 APP_20980 PF00813 FliP family APP_20990 PF04347 Flagellar biosynthesis protein, FliO APP_21000 PF00072 Response regulator receiver domain APP_21010 PF04509 CheC-like family APP_21010 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term APP_21020 PF02154 Flagellar motor switch protein FliM APP_21020 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term APP_21030 PF03748 Flagellar basal body-associated protein FliL APP_21040 PF06289 Flagellar and Swarming motility proteins APP_21050 PF00460 Flagella basal body rod protein APP_21050 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APP_21060 PF03963 Flagellar hook capping protein - N-terminal region APP_21070 PF02120 Flagellar hook-length control protein FliK APP_21090 PF02050 Flagellar FliJ protein APP_21100 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APP_21100 PF02874 ATP synthase alpha/beta family, beta-barrel domain APP_21100 PF18269 T3SS EscN ATPase C-terminal domain APP_21110 PF02108 Flagellar assembly protein FliH APP_21120 PF01706 FliG C-terminal domain APP_21120 PF14842 FliG N-terminal domain APP_21120 PF14841 FliG middle domain APP_21130 PF08345 Flagellar M-ring protein C-terminal APP_21130 PF01514 Secretory protein of YscJ/FliF family APP_21140 PF02049 Flagellar hook-basal body complex protein FliE APP_21150 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APP_21150 PF00460 Flagella basal body rod protein APP_21160 PF00460 Flagella basal body rod protein APP_21170 PF06018 CodY GAF-like domain APP_21170 PF08222 CodY helix-turn-helix domain APP_21180 PF00004 ATPase family associated with various cellular activities (AAA) APP_21180 PF10431 C-terminal, D2-small domain, of ClpB protein APP_21180 PF07724 AAA domain (Cdc48 subfamily) APP_21190 PF00227 Proteasome subunit APP_21200 PF02899 Phage integrase, N-terminal SAM-like domain APP_21200 PF00589 Phage integrase family APP_21210 PF01134 Glucose inhibited division protein A APP_21220 PF01751 Toprim domain APP_21220 PF01396 Topoisomerase DNA binding C4 zinc finger APP_21220 PF01131 DNA topoisomerase APP_21230 PF02481 DNA recombination-mediator protein A APP_21240 PF02629 CoA binding domain APP_21240 PF00549 CoA-ligase APP_21250 PF08442 ATP-grasp domain APP_21250 PF00549 CoA-ligase APP_21260 PF01312 FlhB HrpN YscU SpaS Family APP_21280 PF01351 Ribonuclease HII APP_21290 PF01926 50S ribosome-binding GTPase APP_21300 PF10502 Signal peptidase, peptidase S26 APP_21310 PF01245 Ribosomal protein L19 APP_21320 PF01746 tRNA (Guanine-1)-methyltransferase APP_21330 PF01782 RimM N-terminal domain APP_21330 PF05239 PRC-barrel domain APP_21340 PF11068 YlqD protein APP_21370 PF00886 Ribosomal protein S16 APP_21380 PF02881 SRP54-type protein, helical bundle domain APP_21380 PF00448 SRP54-type protein, GTPase domain APP_21380 PF02978 Signal peptide binding domain APP_21390 PF04297 Putative helix-turn-helix protein, YlxM / p13 like APP_21400 PF02881 SRP54-type protein, helical bundle domain APP_21400 PF00448 SRP54-type protein, GTPase domain APP_21410 PF06470 SMC proteins Flexible Hinge Domain APP_21410 PF02463 RecF/RecN/SMC N terminal domain APP_21420 PF00035 Double-stranded RNA binding motif APP_21420 PF14622 Ribonuclease-III-like APP_21430 PF00550 Phosphopantetheine attachment site APP_21450 PF00698 Acyl transferase domain APP_21460 PF02504 Fatty acid synthesis protein APP_21470 PF08279 HTH domain APP_21470 PF01575 MaoC like domain APP_21480 PF00270 DEAD/DEAH box helicase APP_21480 PF00271 Helicase conserved C-terminal domain APP_21480 PF17191 RecG wedge domain APP_21490 PF13684 Dihydroxyacetone kinase family APP_21490 PF02734 DAK2 domain APP_21500 PF03780 Asp23 family, cell envelope-related function APP_21510 PF00830 Ribosomal L28 family APP_21520 PF00834 Ribulose-phosphate 3 epimerase family APP_21530 PF16745 RsgA N-terminal domain APP_21530 PF03193 RsgA GTPase APP_21540 PF00069 Protein kinase domain APP_21540 PF03793 PASTA domain APP_21560 PF04055 Radical SAM superfamily APP_21570 PF01189 16S rRNA methyltransferase RsmB/F APP_21570 PF01029 NusB family APP_21580 PF00551 Formyl transferase APP_21580 PF02911 Formyl transferase, C-terminal domain APP_21590 PF04851 Type III restriction enzyme, res subunit APP_21590 PF18074 Primosomal protein N C-terminal domain APP_21590 PF18319 PriA DNA helicase Cys-rich region (CRR) domain APP_21590 PF17764 3′ DNA-binding domain (3′BD) APP_21590 PF00271 Helicase conserved C-terminal domain APP_21600 PF04127 DNA / pantothenate metabolism flavoprotein APP_21600 PF02441 Flavoprotein APP_21610 PF01192 RNA polymerase Rpb6 APP_21620 PF00625 Guanylate kinase APP_21630 PF04025 Domain of unknown function (DUF370) APP_21640 PF03755 YicC-like family, N-terminal region APP_21640 PF08340 Domain of unknown function (DUF1732) APP_21650 PF00690 Cation transporter/ATPase, N-terminus APP_21650 PF00689 Cation transporting ATPase, C-terminus APP_21660 PF05670 NFACT protein RNA binding domain APP_21670 PF01903 CbiX APP_21680 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APP_21700 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APP_21700 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APP_21720 PF14306 PUA-like domain APP_21720 PF01747 ATP-sulfurylase APP_21730 PF01507 Phosphoadenosine phosphosulfate reductase family APP_21740 PF00156 Phosphoribosyl transferase domain APP_21750 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family APP_21760 PF01180 Dihydroorotate dehydrogenase APP_21770 PF00970 Oxidoreductase FAD-binding domain APP_21770 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B APP_21780 PF02142 MGS-like domain APP_21780 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain APP_21780 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APP_21790 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain APP_21790 PF00117 Glutamine amidotransferase class-I APP_21800 PF01979 Amidohydrolase family APP_21810 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APP_21810 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APP_21820 PF00860 Permease family APP_21830 PF00156 Phosphoribosyl transferase domain APP_21840 PF01479 S4 domain APP_21840 PF00849 RNA pseudouridylate synthase APP_21850 PF01252 Signal peptidase (SPase) II APP_21860 PF01258 Prokaryotic dksA/traR C4-type zinc finger APP_21870 PF00133 tRNA synthetases class I (I, L, M and V) APP_21870 PF06827 Zinc finger found in FPG and IleRS APP_21870 PF08264 Anticodon-binding domain of tRNA APP_21880 PF05103 DivIVA protein APP_21900 PF17774 Putative RNA-binding domain in YlmH APP_21900 PF01479 S4 domain APP_21910 PF02325 YGGT family APP_21920 PF04472 Cell division protein SepF APP_21930 PF01168 Alanine racemase, N-terminal domain APP_21950 PF05239 PRC-barrel domain APP_21970 PF04539 Sigma-70 region 3 APP_21970 PF04542 Sigma-70 region 2 APP_21970 PF04545 Sigma-70, region 4 APP_21980 PF04545 Sigma-70, region 4 APP_21980 PF04542 Sigma-70 region 2 APP_21990 PF03419 Sporulation factor SpoIIGA APP_22000 PF12327 FtsZ family, C-terminal domain APP_22000 PF00091 Tubulin/FtsZ family, GTPase domain APP_22010 PF02491 SHS2 domain inserted in FTSA APP_22020 PF06947 Protein of unknown function (DUF1290) APP_22030 PF05949 Bacterial protein of unknown function (DUF881) APP_22040 PF05949 Bacterial protein of unknown function (DUF881) APP_22050 PF08478 POTRA domain, FtsQ-type APP_22060 PF01565 FAD binding domain APP_22060 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain APP_22070 PF03033 Glycosyltransferase family 28 N-terminal domain APP_22070 PF04101 Glycosyltransferase family 28 C-terminal domain APP_22080 PF01098 Cell cycle protein APP_22090 PF08245 Mur ligase middle domain APP_22090 PF02875 Mur ligase family, glutamate ligase domain APP_22100 PF00953 Glycosyl transferase family 4 APP_22100 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 APP_22110 PF08245 Mur ligase middle domain APP_22110 PF02875 Mur ligase family, glutamate ligase domain APP_22110 PF01225 Mur ligase family, catalytic domain APP_22120 PF00905 Penicillin binding protein transpeptidase domain APP_22120 PF03717 Penicillin-binding Protein dimerisation domain APP_22120 PF03793 PASTA domain APP_22150 PF01795 MraW methylase family APP_22160 PF02381 MraZ protein, putative antitoxin-like APP_22170 PF10079 Bacillithiol biosynthesis BshC APP_22190 PF02558 Ketopantoate reductase PanE/ApbA APP_22190 PF08546 Ketopantoate reductase PanE/ApbA C terminal APP_22200 PF00583 Acetyltransferase (GNAT) family APP_22220 PF01783 Ribosomal L32p protein family APP_22230 PF02620 Large ribosomal RNA subunit accumulation protein YceD APP_22240 PF05636 HIGH Nucleotidyl Transferase APP_22250 PF05362 Lon protease (S16) C-terminal proteolytic domain APP_22250 PF13180 PDZ domain APP_22260 PF01734 Patatin-like phospholipase APP_22270 PF07670 Nucleoside recognition APP_22280 PF01467 Cytidylyltransferase-like APP_22310 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) APP_22320 PF06133 Control of competence regulator ComK, YlbF/YmcA APP_22340 PF14003 YlbE-like protein APP_22350 PF14071 Putative coat protein APP_22360 PF00188 Cysteine-rich secretory protein family APP_22360 PF14504 CAP-associated N-terminal APP_22370 PF00571 CBS domain APP_22380 PF08868 YugN-like family APP_22390 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) APP_22400 PF03626 Prokaryotic Cytochrome C oxidase subunit IV APP_22410 PF00510 Cytochrome c oxidase subunit III APP_22420 PF00115 Cytochrome C and Quinol oxidase polypeptide I APP_22430 PF00034 Cytochrome c APP_22430 PF02790 Cytochrome C oxidase subunit II, transmembrane domain APP_22430 PF00116 Cytochrome C oxidase subunit II, periplasmic domain APP_22440 PF01040 UbiA prenyltransferase family APP_22450 PF02628 Cytochrome oxidase assembly protein APP_22460 PF02074 Carboxypeptidase Taq (M32) metallopeptidase APP_22470 PF13307 Helicase C-terminal domain APP_22490 PF01170 Putative RNA methylase family UPF0020 APP_22490 PF02926 THUMP domain APP_22500 PF05103 DivIVA protein APP_22510 PF11122 Inner spore coat protein D APP_22520 PF13482 RNase_H superfamily APP_22530 PF00271 Helicase conserved C-terminal domain APP_22530 PF09369 Domain of unknown function (DUF1998) APP_22530 PF00270 DEAD/DEAH box helicase APP_22550 PF14179 YppG-like protein APP_22570 PF08807 Bacterial domain of unknown function (DUF1798) APP_22600 PF10720 Protein of unknown function (DUF2515) APP_22610 PF03838 Recombination protein U APP_22620 PF00912 Transglycosylase APP_22620 PF00905 Penicillin binding protein transpeptidase domain APP_22640 PF00633 Helix-hairpin-helix motif APP_22640 PF00730 HhH-GPD superfamily base excision DNA repair protein APP_22640 PF10576 Iron-sulfur binding domain of endonuclease III APP_22650 PF07261 Replication initiation and membrane attachment APP_22660 PF01336 OB-fold nucleic acid binding domain APP_22660 PF00152 tRNA synthetases class II (D, K and N) APP_22670 PF00155 Aminotransferase class I and II APP_22690 PF14084 Protein of unknown function (DUF4264) APP_22710 PF02261 Aspartate decarboxylase APP_22720 PF02569 Pantoate-beta-alanine ligase APP_22730 PF02548 Ketopantoate hydroxymethyltransferase APP_22740 PF02237 Biotin protein ligase C terminal domain APP_22740 PF03099 Biotin/lipoate A/B protein ligase family APP_22740 PF08279 HTH domain APP_22750 PF01743 Poly A polymerase head domain APP_22750 PF13735 tRNA nucleotidyltransferase domain 2 putative APP_22750 PF12627 Probable RNA and SrmB- binding site of polymerase A APP_22760 PF00534 Glycosyl transferases group 1 APP_22760 PF13439 Glycosyltransferase Family 4 APP_22770 PF02142 MGS-like domain APP_22780 PF01113 Dihydrodipicolinate reductase, N-terminus APP_22780 PF05173 Dihydrodipicolinate reductase, C-terminus APP_22790 PF03819 MazG nucleotide pyrophosphohydrolase domain APP_22800 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 APP_22800 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) APP_22810 PF09577 Sporulation protein YpjB (SpoYpjB) APP_22820 PF07187 Protein of unknown function (DUF1405) APP_22840 PF01235 Sodium:alanine symporter family APP_22850 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APP_22850 PF00032 Cytochrome b(C-terminal)/b6/petD APP_22860 PF00033 Cytochrome b/b6/petB APP_22870 PF00355 Rieske [2Fe-2S] domain APP_22880 PF10673 Protein of unknown function (DUF2487) APP_22890 PF08858 IDEAL domain APP_22890 PF08864 UPF0302 domain APP_22920 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APP_22930 PF02153 Prephenate dehydrogenase APP_22930 PF01842 ACT domain APP_22940 PF00155 Aminotransferase class I and II APP_22950 PF00290 Tryptophan synthase alpha chain APP_22960 PF00291 Pyridoxal-phosphate dependent enzyme APP_22970 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase APP_22980 PF00218 Indole-3-glycerol phosphate synthase APP_22990 PF02885 Glycosyl transferase family, helical bundle domain APP_22990 PF00591 Glycosyl transferase family, a/b domain APP_23000 PF00425 chorismate binding enzyme APP_23000 PF04715 Anthranilate synthase component I, N terminal region APP_23010 PF07736 Chorismate mutase type I APP_23020 PF01761 3-dehydroquinate synthase APP_23030 PF01264 Chorismate synthase APP_23040 PF03705 CheR methyltransferase, all-alpha domain APP_23040 PF01739 CheR methyltransferase, SAM binding domain APP_23050 PF00334 Nucleoside diphosphate kinase APP_23060 PF00348 Polyprenyl synthetase APP_23070 PF01209 ubiE/COQ5 methyltransferase family APP_23080 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 APP_23090 PF02081 Tryptophan RNA-binding attenuator protein APP_23100 PF01227 GTP cyclohydrolase I APP_23110 PF00216 Bacterial DNA-binding protein APP_23160 PF02040 Arsenical pump membrane protein APP_23170 PF02040 Arsenical pump membrane protein APP_23180 PF09547 Stage IV sporulation protein A (spore_IV_A) APP_23200 PF10966 Protein of unknown function (DUF2768) APP_23210 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus APP_23210 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus APP_23220 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal APP_23220 PF01926 50S ribosome-binding GTPase APP_23240 PF14045 YIEGIA protein APP_23270 PF00575 S1 RNA binding domain APP_23280 PF01553 Acyltransferase APP_23290 PF02224 Cytidylate kinase APP_23310 PF07238 PilZ domain APP_23310 PF12945 Flagellar protein YcgR APP_23320 PF14620 YpeB sporulation APP_23320 PF03413 Peptidase propeptide and YPEB domain APP_23330 PF07486 Cell Wall Hydrolase APP_23330 PF01471 Putative peptidoglycan binding domain APP_23340 PF13367 PrsW family intramembrane metalloprotease APP_23350 PF00710 Asparaginase, N-terminal APP_23350 PF17763 Glutaminase/Asparaginase C-terminal domain APP_23370 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase APP_23370 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain APP_23380 PF05389 Negative regulator of genetic competence (MecA) APP_23390 PF10864 Protein of unknown function (DUF2663) APP_23400 PF01476 LysM domain APP_23410 PF02517 CPBP intramembrane metalloprotease APP_23420 PF00271 Helicase conserved C-terminal domain APP_23420 PF00270 DEAD/DEAH box helicase APP_23430 PF14493 Helix-turn-helix domain APP_23450 PF12822 ECF transporter, substrate-specific component APP_23460 PF00719 Inorganic pyrophosphatase APP_23470 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APP_23470 PF01842 ACT domain APP_23470 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APP_23500 PF08281 Sigma-70, region 4 APP_23500 PF04542 Sigma-70 region 2 APP_23510 PF01923 Cobalamin adenosyltransferase APP_23520 PF00672 HAMP domain APP_23520 PF18698 Histidine kinase sensor domain APP_23520 PF00512 His Kinase A (phospho-acceptor) domain APP_23520 PF00989 PAS fold APP_23520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APP_23530 PF00072 Response regulator receiver domain APP_23530 PF00486 Transcriptional regulatory protein, C terminal APP_23540 PF01578 Cytochrome C assembly protein APP_23550 PF05140 ResB-like family APP_23560 PF00578 AhpC/TSA family APP_23570 PF01479 S4 domain APP_23570 PF00849 RNA pseudouridylate synthase APP_23580 PF07670 Nucleoside recognition APP_23590 PF07670 Nucleoside recognition APP_23600 PF00768 D-alanyl-D-alanine carboxypeptidase APP_23600 PF07943 Penicillin-binding protein 5, C-terminal domain APP_23610 PF04079 Segregation and condensation complex subunit ScpB APP_23620 PF02616 Segregation and condensation protein ScpA APP_23630 PF03745 Domain of unknown function (DUF309) APP_23640 PF00583 Acetyltransferase (GNAT) family APP_23650 PF00885 6,7-dimethyl-8-ribityllumazine synthase APP_23660 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase APP_23660 PF00925 GTP cyclohydrolase II APP_23670 PF00677 Lumazine binding domain APP_23680 PF01872 RibD C-terminal domain APP_23680 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APP_23690 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APP_23700 PF06207 Protein of unknown function (DUF1002) APP_23710 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APP_23710 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APP_23720 PF03323 Bacillus/Clostridium GerA spore germination protein APP_23730 PF07451 Stage V sporulation protein AD (SpoVAD) APP_23740 PF13782 Stage V sporulation protein AB APP_23750 PF12164 Stage V sporulation protein AA APP_23760 PF04539 Sigma-70 region 3 APP_23760 PF04542 Sigma-70 region 2 APP_23760 PF04545 Sigma-70, region 4 APP_23770 PF13581 Histidine kinase-like ATPase domain APP_23780 PF01740 STAS domain APP_23790 PF07943 Penicillin-binding protein 5, C-terminal domain APP_23790 PF00768 D-alanyl-D-alanine carboxypeptidase APP_23800 PF02885 Glycosyl transferase family, helical bundle domain APP_23800 PF00591 Glycosyl transferase family, a/b domain APP_23800 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain APP_23810 PF01048 Phosphorylase superfamily APP_23820 PF01676 Metalloenzyme superfamily APP_23830 PF00589 Phage integrase family APP_23830 PF02899 Phage integrase, N-terminal SAM-like domain APP_23840 PF14004 Protein of unknown function (DUF4227) APP_23850 PF01475 Ferric uptake regulator family APP_23860 PF01944 Stage II sporulation protein M APP_23880 PF00293 NUDIX domain APP_23900 PF00248 Aldo/keto reductase family APP_23910 PF00440 Bacterial regulatory proteins, tetR family APP_23920 PF01040 UbiA prenyltransferase family APP_23940 PF10827 Protein of unknown function (DUF2552) APP_23950 PF01521 Iron-sulphur cluster biosynthesis APP_23960 PF01209 ubiE/COQ5 methyltransferase family APP_23970 PF08818 Domain of unknown function (DU1801) APP_23980 PF08818 Domain of unknown function (DU1801) APP_24030 PF11799 impB/mucB/samB family C-terminal domain APP_24030 PF11798 IMS family HHH motif APP_24030 PF00817 impB/mucB/samB family APP_24050 PF00106 short chain dehydrogenase APP_24060 PF00753 Metallo-beta-lactamase superfamily APP_24070 PF03807 NADP oxidoreductase coenzyme F420-dependent APP_24070 PF14748 Pyrroline-5-carboxylate reductase dimerisation APP_24080 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APP_24090 PF12706 Beta-lactamase superfamily domain APP_24090 PF00753 Metallo-beta-lactamase superfamily APP_24110 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain APP_24110 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain APP_24120 PF00708 Acylphosphatase APP_24130 PF02653 Branched-chain amino acid transport system / permease component APP_24140 PF00005 ABC transporter APP_24150 PF13407 Periplasmic binding protein domain APP_24160 PF04397 LytTr DNA-binding domain APP_24160 PF00072 Response regulator receiver domain APP_24170 PF06580 Histidine kinase APP_24170 PF02743 Cache domain APP_24170 PF00672 HAMP domain APP_24170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APP_24190 PF13243 Squalene-hopene cyclase C-terminal domain APP_24190 PF13249 Squalene-hopene cyclase N-terminal domain APP_24210 PF00005 ABC transporter APP_24220 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain APP_24220 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APP_24230 PF00817 impB/mucB/samB family APP_24230 PF11799 impB/mucB/samB family C-terminal domain APP_24230 PF11798 IMS family HHH motif APP_24240 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster APP_24240 PF07992 Pyridine nucleotide-disulphide oxidoreductase APP_24250 PF00310 Glutamine amidotransferases class-II APP_24250 PF04898 Glutamate synthase central domain APP_24250 PF01645 Conserved region in glutamate synthase APP_24250 PF01493 GXGXG motif APP_24260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APP_24260 PF03466 LysR substrate binding domain APP_24270 PF01546 Peptidase family M20/M25/M40 APP_24270 PF07687 Peptidase dimerisation domain APP_24280 PF11728 Putative aromatic acid exporter C-terminal domain APP_24280 PF06081 Aromatic acid exporter family member 1 APP_24290 PF06491 Disulphide isomerase APP_24300 PF00364 Biotin-requiring enzyme APP_24300 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APP_24300 PF02817 e3 binding domain APP_24310 PF02779 Transketolase, pyrimidine binding domain APP_24310 PF02780 Transketolase, C-terminal domain APP_24320 PF00676 Dehydrogenase E1 component APP_24330 PF07992 Pyridine nucleotide-disulphide oxidoreductase APP_24330 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APP_24340 PF11118 Protein of unknown function (DUF2627) APP_24350 PF08769 Sporulation initiation factor Spo0A C terminal APP_24350 PF00072 Response regulator receiver domain APP_24360 PF17820 PDZ domain APP_24360 PF05580 SpoIVB peptidase S55 APP_24370 PF13476 AAA domain APP_24380 PF01316 Arginine repressor, DNA binding domain APP_24380 PF02863 Arginine repressor, C-terminal domain APP_24390 PF01479 S4 domain APP_24390 PF01728 FtsJ-like methyltransferase APP_24400 PF02780 Transketolase, C-terminal domain APP_24400 PF02779 Transketolase, pyrimidine binding domain APP_24400 PF13292 1-deoxy-D-xylulose-5-phosphate synthase APP_24430 PF00348 Polyprenyl synthetase APP_24440 PF02609 Exonuclease VII small subunit APP_24450 PF13742 OB-fold nucleic acid binding domain APP_24450 PF02601 Exonuclease VII, large subunit APP_24460 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain APP_24460 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain APP_24470 PF01029 NusB family APP_24480 PF03780 Asp23 family, cell envelope-related function APP_24490 PF00289 Biotin carboxylase, N-terminal domain APP_24490 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APP_24490 PF02785 Biotin carboxylase C-terminal domain APP_24500 PF00364 Biotin-requiring enzyme APP_24510 PF12685 SpoIIIAH-like protein APP_24530 PF09581 Stage III sporulation protein AF (Spore_III_AF) APP_24540 PF09546 Stage III sporulation protein AE (spore_III_AE) APP_24550 PF06686 Stage III sporulation protein AC/AD protein family APP_24560 PF06686 Stage III sporulation protein AC/AD protein family APP_24570 PF09548 Stage III sporulation protein AB (spore_III_AB) APP_24600 PF09285 Elongation factor P, C-terminal APP_24600 PF08207 Elongation factor P (EF-P) KOW-like domain APP_24600 PF01132 Elongation factor P (EF-P) OB domain APP_24610 PF00557 Metallopeptidase family M24 APP_24610 PF01321 Creatinase/Prolidase N-terminal domain APP_24620 PF01220 Dehydroquinase class II APP_24630 PF11085 Conserved membrane protein YqhR APP_24640 PF07136 Protein of unknown function (DUF1385) APP_24660 PF01734 Patatin-like phospholipase APP_24670 PF00317 Ribonucleotide reductase, all-alpha domain APP_24670 PF02867 Ribonucleotide reductase, barrel domain APP_24670 PF03477 ATP cone domain APP_24680 PF03099 Biotin/lipoate A/B protein ligase family APP_24690 PF00581 Rhodanese-like domain APP_24700 PF02347 Glycine cleavage system P-protein APP_24710 PF02347 Glycine cleavage system P-protein APP_24720 PF01571 Aminomethyltransferase folate-binding domain APP_24720 PF08669 Glycine cleavage T-protein C-terminal barrel domain APP_24730 PF00176 SNF2 family N-terminal domain APP_24730 PF00271 Helicase conserved C-terminal domain APP_24740 PF11079 Bacterial protein YqhG of unknown function APP_24750 PF14038 YqzE-like protein APP_24800 PF07963 Prokaryotic N-terminal methylation motif APP_24810 PF00482 Type II secretion system (T2SS), protein F APP_24820 PF00437 Type II/IV secretion system protein APP_24830 PF11117 Protein of unknown function (DUF2626) APP_24840 PF00753 Metallo-beta-lactamase superfamily APP_24870 PF00246 Zinc carboxypeptidase APP_24870 PF01476 LysM domain APP_24880 PF00884 Sulfatase APP_24890 PF00480 ROK family APP_24900 PF06014 Bacterial protein of unknown function (DUF910) APP_24910 PF01694 Rhomboid family APP_24930 PF01812 5-formyltetrahydrofolate cyclo-ligase family APP_24940 PF00471 Ribosomal protein L33 APP_24970 PF01895 PhoU domain APP_24980 PF00005 ABC transporter APP_24990 PF00528 Binding-protein-dependent transport system inner membrane component APP_25000 PF00528 Binding-protein-dependent transport system inner membrane component APP_25010 PF12849 PBP superfamily domain APP_25020 PF07690 Major Facilitator Superfamily APP_25040 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APP_25040 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APP_25050 PF04306 Protein of unknown function (DUF456) APP_25060 PF02690 Na+/Pi-cotransporter APP_25080 PF06691 Protein of unknown function (DUF1189) APP_25090 PF02743 Cache domain APP_25090 PF00672 HAMP domain APP_25090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APP_25100 PF07690 Major Facilitator Superfamily APP_25120 PF04551 GcpE protein APP_25150 PF01475 Ferric uptake regulator family APP_25160 PF00950 ABC 3 transport family APP_25170 PF00005 ABC transporter APP_25180 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) APP_25180 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 APP_25190 PF11116 Protein of unknown function (DUF2624) APP_25200 PF01261 Xylose isomerase-like TIM barrel APP_25210 PF00271 Helicase conserved C-terminal domain APP_25210 PF00270 DEAD/DEAH box helicase APP_25230 PF02401 LytB protein APP_25240 PF01784 NIF3 (NGG1p interacting factor 3) APP_25250 PF04816 tRNA (adenine(22)-N(1))-methyltransferase APP_25260 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APP_25270 PF00140 Sigma-70 factor, region 1.2 APP_25270 PF04542 Sigma-70 region 2 APP_25270 PF03979 Sigma-70 factor, region 1.1 APP_25270 PF04545 Sigma-70, region 4 APP_25270 PF04539 Sigma-70 region 3 APP_25280 PF08275 DNA primase catalytic core, N-terminal domain APP_25280 PF10410 DnaB-helicase binding domain of primase APP_25280 PF01807 CHC2 zinc finger APP_25300 PF03618 Kinase/pyrophosphorylase APP_25310 PF08279 HTH domain APP_25310 PF00571 CBS domain APP_25320 PF02092 Glycyl-tRNA synthetase beta subunit APP_25330 PF02091 Glycyl-tRNA synthetase alpha subunit APP_25340 PF02565 Recombination protein O C terminal APP_25340 PF11967 Recombination protein O N terminal APP_25350 PF14006 YqzL-like protein APP_25360 PF07650 KH domain APP_25360 PF01926 50S ribosome-binding GTPase APP_25370 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APP_25380 PF01219 Prokaryotic diacylglycerol kinase APP_25390 PF02130 Uncharacterized protein family UPF0054 APP_25400 PF01966 HD domain APP_25400 PF07697 7TM-HD extracellular APP_25400 PF07698 7TM receptor with intracellular HD hydrolase APP_25410 PF02562 PhoH-like protein APP_25420 PF06898 Putative stage IV sporulation protein YqfD APP_25430 PF07873 YabP family APP_25450 PF12127 SigmaW regulon antibacterial APP_25460 PF01957 NfeD-like C-terminal, partner-binding APP_25460 PF01972 Serine dehydrogenase proteinase APP_25470 PF13667 ThiC-associated domain APP_25470 PF01964 Radical SAM ThiC family APP_25480 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase APP_25500 PF09424 Yqey-like protein APP_25510 PF01165 Ribosomal protein S21 APP_25520 PF02690 Na+/Pi-cotransporter APP_25530 PF01791 DeoC/LacD family aldolase APP_25540 PF04055 Radical SAM superfamily APP_25540 PF01938 TRAM domain APP_25540 PF00919 Uncharacterized protein family UPF0004 APP_25550 PF04452 RNA methyltransferase APP_25570 PF00684 DnaJ central domain APP_25570 PF01556 DnaJ C terminal domain APP_25570 PF00226 DnaJ domain APP_25580 PF00012 Hsp70 protein APP_25590 PF01025 GrpE APP_25600 PF01628 HrcA protein C terminal domain APP_25610 PF06969 HemN C-terminal domain APP_25610 PF04055 Radical SAM superfamily APP_25620 PF03144 Elongation factor Tu domain 2 APP_25620 PF00009 Elongation factor Tu GTP binding domain APP_25620 PF06421 GTP-binding protein LepA C-terminus APP_25620 PF00679 Elongation factor G C-terminus APP_25640 PF07454 Stage II sporulation protein P (SpoIIP) APP_25650 PF03418 Germination protease APP_25660 PF01649 Ribosomal protein S20 APP_25670 PF06144 DNA polymerase III, delta subunit APP_25680 PF14141 YqzM-like protein APP_25690 PF03772 Competence protein APP_25690 PF13567 Domain of unknown function (DUF4131) APP_25690 PF00753 Metallo-beta-lactamase superfamily APP_25700 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APP_25710 PF10531 SLBB domain APP_25720 PF03807 NADP oxidoreductase coenzyme F420-dependent APP_25720 PF14748 Pyrroline-5-carboxylate reductase dimerisation APP_25730 PF13649 Methyltransferase domain APP_25750 PF01966 HD domain APP_25760 PF01467 Cytidylyltransferase-like APP_25770 PF01985 CRS1 / YhbY (CRM) domain APP_25780 PF01488 Shikimate / quinate 5-dehydrogenase APP_25780 PF18317 Shikimate 5'-dehydrogenase C-terminal domain APP_25780 PF08501 Shikimate dehydrogenase substrate binding domain APP_25790 PF01926 50S ribosome-binding GTPase APP_25810 PF08970 Sporulation inhibitor A APP_25820 PF04542 Sigma-70 region 2 APP_25820 PF04545 Sigma-70, region 4 APP_25840 PF01048 Phosphorylase superfamily APP_25850 PF07423 Domain of unknown function (DUF1510) APP_25860 PF00905 Penicillin binding protein transpeptidase domain APP_25860 PF03717 Penicillin-binding Protein dimerisation domain APP_25870 PF03449 Transcription elongation factor, N-terminal APP_25870 PF01272 Transcription elongation factor, GreA/GreB, C-term APP_25900 PF01596 O-methyltransferase APP_25910 PF02618 YceG-like family APP_25920 PF06949 Protein of unknown function (DUF1292) APP_25930 PF03652 Holliday junction resolvase APP_25940 PF06135 IreB regulatory phosphoprotein APP_25950 PF02272 DHHA1 domain APP_25950 PF01411 tRNA synthetases class II (A) APP_25950 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APP_25960 PF01594 AI-2E family transporter APP_25980 PF13538 UvrD-like helicase C-terminal domain APP_25980 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain APP_25980 PF14490 Helix-hairpin-helix containing domain APP_26010 PF00266 Aminotransferase class-V APP_26020 PF02082 Transcriptional regulator APP_26030 PF16193 AAA C-terminal domain APP_26030 PF12002 MgsA AAA+ ATPase C terminal APP_26030 PF05496 Holliday junction DNA helicase RuvB P-loop domain APP_26040 PF00899 ThiF family APP_26050 PF00152 tRNA synthetases class II (D, K and N) APP_26050 PF02938 GAD domain APP_26050 PF01336 OB-fold nucleic acid binding domain APP_26060 PF03129 Anticodon binding domain APP_26060 PF13393 Histidyl-tRNA synthetase APP_26080 PF08239 Bacterial SH3 domain APP_26080 PF01520 N-acetylmuramoyl-L-alanine amidase APP_26090 PF02580 D-Tyr-tRNA(Tyr) deacylase APP_26100 PF13291 ACT domain APP_26100 PF04607 Region found in RelA / SpoT proteins APP_26100 PF02824 TGS domain APP_26110 PF00156 Phosphoribosyl transferase domain APP_26120 PF10141 Single-strand DNA-specific exonuclease, C terminal domain APP_26120 PF17768 RecJ OB domain APP_26120 PF02272 DHHA1 domain APP_26120 PF01368 DHH family APP_26160 PF02355 Protein export membrane protein APP_26160 PF07549 SecD/SecF GG Motif APP_26170 PF13797 Post-transcriptional regulator APP_26180 PF14667 Polysaccharide biosynthesis C-terminal domain APP_26180 PF01943 Polysaccharide biosynthesis protein APP_26190 PF12670 Protein of unknown function (DUF3792) APP_26200 PF02699 Preprotein translocase subunit APP_26210 PF01702 Queuine tRNA-ribosyltransferase APP_26220 PF02547 Queuosine biosynthesis protein APP_26230 PF11146 Protein of unknown function (DUF2905) APP_26240 PF17864 RuvB AAA lid domain APP_26240 PF05491 RuvB C-terminal winged helix domain APP_26240 PF05496 Holliday junction DNA helicase RuvB P-loop domain APP_26250 PF07499 RuvA, C-terminal domain APP_26250 PF01330 RuvA N terminal domain APP_26260 PF08977 Bypass of Forespore C, N terminal APP_26260 PF08955 BofC C-terminal domain APP_26270 PF01709 Transcriptional regulator APP_26280 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) APP_26290 PF02540 NAD synthase APP_26300 PF01476 LysM domain APP_26310 PF02445 Quinolinate synthetase A protein APP_26320 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain APP_26320 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain APP_26330 PF00890 FAD binding domain APP_26330 PF02910 Fumarate reductase flavoprotein C-term APP_26340 PF00266 Aminotransferase class-V APP_26350 PF02829 3H domain APP_26350 PF08279 HTH domain APP_26360 PF01842 ACT domain APP_26360 PF00800 Prephenate dehydratase APP_26370 PF01842 ACT domain APP_26380 PF01926 50S ribosome-binding GTPase APP_26380 PF09269 Domain of unknown function (DUF1967) APP_26380 PF01018 GTP1/OBG APP_26390 PF14682 Sporulation initiation phospho-transferase B, C-terminal APP_26390 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain APP_26400 PF01016 Ribosomal L27 protein APP_26410 PF04327 Cysteine protease Prp APP_26420 PF00829 Ribosomal prokaryotic L21 protein APP_26430 PF00575 S1 RNA binding domain APP_26430 PF10150 Ribonuclease E/G family APP_26440 PF02163 Peptidase family M50 APP_26450 PF01551 Peptidase family M23 APP_26460 PF01566 Natural resistance-associated macrophage protein APP_26470 PF00881 Nitroreductase family APP_26480 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APP_26490 PF03775 Septum formation inhibitor MinC, C-terminal domain APP_26500 PF04093 rod shape-determining protein MreD APP_26510 PF04085 rod shape-determining protein MreC APP_26530 PF04002 RadC-like JAB domain APP_26540 PF02545 Maf-like protein APP_26560 PF02875 Mur ligase family, glutamate ligase domain APP_26560 PF08245 Mur ligase middle domain APP_26570 PF10458 Valyl tRNA synthetase tRNA binding arm APP_26570 PF00133 tRNA synthetases class I (I, L, M and V) APP_26570 PF08264 Anticodon-binding domain of tRNA APP_26600 PF01476 LysM domain APP_26610 PF00202 Aminotransferase class-III APP_26620 PF00490 Delta-aminolevulinic acid dehydratase APP_26640 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain APP_26640 PF03900 Porphobilinogen deaminase, C-terminal domain APP_26650 PF01578 Cytochrome C assembly protein APP_26660 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain APP_26660 PF01488 Shikimate / quinate 5-dehydrogenase APP_26660 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain APP_26680 PF01926 50S ribosome-binding GTPase APP_26690 PF02190 ATP-dependent protease La (LON) substrate-binding domain APP_26690 PF00004 ATPase family associated with various cellular activities (AAA) APP_26690 PF05362 Lon protease (S16) C-terminal proteolytic domain APP_26700 PF00004 ATPase family associated with various cellular activities (AAA) APP_26700 PF05362 Lon protease (S16) C-terminal proteolytic domain APP_26710 PF06689 ClpX C4-type zinc finger APP_26710 PF10431 C-terminal, D2-small domain, of ClpB protein APP_26710 PF07724 AAA domain (Cdc48 subfamily) APP_26720 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APP_26720 PF05698 Bacterial trigger factor protein (TF) C-terminus APP_26720 PF05697 Bacterial trigger factor protein (TF) APP_26740 PF00694 Aconitase C-terminal domain APP_26750 PF00330 Aconitase family (aconitate hydratase) APP_26760 PF00180 Isocitrate/isopropylmalate dehydrogenase APP_26770 PF00682 HMGL-like APP_26770 PF08502 LeuA allosteric (dimerisation) domain APP_26780 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain APP_26780 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain APP_26790 PF01842 ACT domain APP_26790 PF10369 Small subunit of acetolactate synthase APP_26800 PF00205 Thiamine pyrophosphate enzyme, central domain APP_26800 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APP_26800 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APP_26840 PF00365 Phosphofructokinase APP_26850 PF07690 Major Facilitator Superfamily APP_26880 PF02779 Transketolase, pyrimidine binding domain APP_26880 PF02780 Transketolase, C-terminal domain APP_26890 PF02779 Transketolase, pyrimidine binding domain APP_26890 PF00456 Transketolase, thiamine diphosphate binding domain APP_26910 PF07729 FCD domain APP_26910 PF00392 Bacterial regulatory proteins, gntR family APP_26940 PF03837 RecT family APP_26950 PF03837 RecT family APP_26990 PF02899 Phage integrase, N-terminal SAM-like domain APP_26990 PF00589 Phage integrase family APP_27000 PF12850 Calcineurin-like phosphoesterase superfamily domain APP_27010 PF01725 Ham1 family APP_27020 PF03725 3' exoribonuclease family, domain 2 APP_27020 PF01138 3' exoribonuclease family, domain 1 APP_27030 PF10646 Sporulation and spore germination APP_27040 PF01177 Asp/Glu/Hydantoin racemase APP_27050 PF01047 MarR family APP_27060 PF00196 Bacterial regulatory proteins, luxR family APP_27070 PF13183 4Fe-4S dicluster domain APP_27070 PF13085 2Fe-2S iron-sulfur cluster binding domain APP_27080 PF02910 Fumarate reductase flavoprotein C-term APP_27080 PF00890 FAD binding domain APP_27090 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit APP_27100 PF10702 Protein of unknown function (DUF2507) APP_27110 PF02151 UvrB/uvrC motif APP_27110 PF01541 GIY-YIG catalytic domain APP_27110 PF08459 UvrC Helix-hairpin-helix N-terminal APP_27120 PF00085 Thioredoxin APP_27130 PF00766 Electron transfer flavoprotein FAD-binding domain APP_27130 PF01012 Electron transfer flavoprotein domain APP_27140 PF01012 Electron transfer flavoprotein domain APP_27150 PF00440 Bacterial regulatory proteins, tetR family APP_27150 PF08359 YsiA-like protein, C-terminal region APP_27160 PF00501 AMP-binding enzyme APP_27160 PF13193 AMP-binding enzyme C-terminal domain APP_27170 PF03994 Domain of Unknown Function (DUF350) APP_27180 PF01713 Smr domain APP_27180 PF00488 MutS domain V APP_27190 PF14791 DNA polymerase beta thumb APP_27190 PF14716 Helix-hairpin-helix domain APP_27190 PF02811 PHP domain APP_27200 PF02674 Colicin V production protein APP_27210 PF05164 Cell division protein ZapA APP_27220 PF01351 Ribonuclease HII APP_27220 PF11858 Domain of unknown function (DUF3378) APP_27230 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain APP_27230 PF01588 Putative tRNA binding domain APP_27230 PF03147 Ferredoxin-fold anticodon binding domain APP_27230 PF03484 tRNA synthetase B5 domain APP_27230 PF03483 B3/4 domain APP_27240 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain APP_27240 PF01409 tRNA synthetases class II core domain (F) APP_27260 PF08032 RNA 2'-O ribose methyltransferase substrate binding APP_27260 PF00588 SpoU rRNA Methylase family APP_27270 PF14098 Small, acid-soluble spore protein I APP_27280 PF05343 M42 glutamyl aminopeptidase APP_27310 PF00453 Ribosomal protein L20 APP_27320 PF01632 Ribosomal protein L35 APP_27330 PF05198 Translation initiation factor IF-3, N-terminal domain APP_27330 PF00707 Translation initiation factor IF-3, C-terminal domain APP_27340 PF08141 Small acid-soluble spore protein H family APP_27350 PF03630 Fumble APP_27360 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APP_27360 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APP_27360 PF02824 TGS domain APP_27360 PF03129 Anticodon binding domain APP_27370 PF08812 YtxC-like family APP_27380 PF01695 IstB-like ATP binding protein APP_27380 PF07319 Primosomal protein DnaI N-terminus APP_27390 PF07261 Replication initiation and membrane attachment APP_27400 PF03477 ATP cone domain APP_27410 PF02675 S-adenosylmethionine decarboxylase APP_27420 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain APP_27420 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APP_27430 PF01121 Dephospho-CoA kinase APP_27440 PF02659 Putative manganese efflux pump APP_27450 PF06827 Zinc finger found in FPG and IleRS APP_27450 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain APP_27450 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain APP_27460 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain APP_27460 PF00476 DNA polymerase family A APP_27460 PF01367 5'-3' exonuclease, C-terminal SAM fold APP_27470 PF01145 SPFH domain / Band 7 family APP_27480 PF01145 SPFH domain / Band 7 family APP_27480 PF12221 Bacterial membrane protein N terminal APP_27490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APP_27490 PF00512 His Kinase A (phospho-acceptor) domain APP_27490 PF16736 Single Cache-like APP_27490 PF00989 PAS fold APP_27500 PF00486 Transcriptional regulatory protein, C terminal APP_27500 PF00072 Response regulator receiver domain APP_27510 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain APP_27510 PF00056 lactate/malate dehydrogenase, NAD binding domain APP_27520 PF00180 Isocitrate/isopropylmalate dehydrogenase APP_27530 PF00285 Citrate synthase, C-terminal domain APP_27540 PF04186 FxsA cytoplasmic membrane protein APP_27550 PF00224 Pyruvate kinase, barrel domain APP_27550 PF00391 PEP-utilising enzyme, mobile domain APP_27550 PF02887 Pyruvate kinase, alpha/beta domain APP_27560 PF00365 Phosphofructokinase APP_27570 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit APP_27580 PF17848 Acetyl-coA carboxylase zinc finger domain APP_27580 PF01039 Carboxyl transferase domain APP_27590 PF00390 Malic enzyme, N-terminal domain APP_27590 PF03949 Malic enzyme, NAD binding domain APP_27600 PF01336 OB-fold nucleic acid binding domain APP_27600 PF02811 PHP domain APP_27600 PF07733 Bacterial DNA polymerase III alpha NTPase domain APP_27600 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APP_27600 PF14579 Helix-hairpin-helix motif APP_27610 PF14034 Sporulation protein YtrH APP_27630 PF01368 DHH family APP_27630 PF02272 DHHA1 domain APP_27650 PF07085 DRTGG domain APP_27650 PF03061 Thioesterase superfamily APP_27650 PF00571 CBS domain APP_27650 PF00392 Bacterial regulatory proteins, gntR family APP_27690 PF00206 Lyase APP_27690 PF14698 Argininosuccinate lyase C-terminal APP_27700 PF00764 Arginosuccinate synthase APP_27740 PF00871 Acetokinase family APP_27760 PF02384 N-6 DNA Methylase APP_27770 PF08534 Redoxin APP_27780 PF09579 Sporulation protein YtfJ (Spore_YtfJ) APP_27800 PF06271 RDD family APP_27810 PF01343 Peptidase family S49 APP_27820 PF01513 ATP-NAD kinase APP_27830 PF00269 Small, acid-soluble spore proteins, alpha/beta type APP_27840 PF02926 THUMP domain APP_27840 PF02568 Thiamine biosynthesis protein (ThiI) APP_27850 PF00266 Aminotransferase class-V APP_27860 PF08402 TOBE domain APP_27860 PF00005 ABC transporter APP_27870 PF00248 Aldo/keto reductase family APP_27880 PF06160 Septation ring formation regulator, EzrA APP_27890 PF02811 PHP domain APP_27900 PF00440 Bacterial regulatory proteins, tetR family APP_27910 PF13185 GAF domain APP_27920 PF00990 Diguanylate cyclase, GGDEF domain APP_27930 PF01479 S4 domain APP_27930 PF00163 Ribosomal protein S4/S9 N-terminal domain APP_28000 PF00005 ABC transporter APP_28000 PF03412 Peptidase C39 family APP_28000 PF00664 ABC transporter transmembrane region APP_28010 PF02311 AraC-like ligand binding domain APP_28010 PF12833 Helix-turn-helix domain APP_28020 PF01557 Fumarylacetoacetate (FAA) hydrolase family APP_28030 PF05683 Fumarase C-terminus APP_28040 PF05681 Fumarate hydratase (Fumerase) APP_28050 PF00939 Sodium:sulfate symporter transmembrane region APP_28120 PF00872 Transposase, Mutator family APP_28140 PF01609 Transposase DDE domain APP_28150 PF00579 tRNA synthetases class I (W and Y) APP_28150 PF01479 S4 domain APP_28160 PF00905 Penicillin binding protein transpeptidase domain APP_28160 PF00912 Transglycosylase APP_28170 PF00583 Acetyltransferase (GNAT) family APP_28180 PF00501 AMP-binding enzyme APP_28180 PF13193 AMP-binding enzyme C-terminal domain APP_28190 PF00583 Acetyltransferase (GNAT) family APP_28200 PF00571 CBS domain APP_28210 PF00850 Histone deacetylase domain APP_28220 PF00356 Bacterial regulatory proteins, lacI family APP_28230 PF01817 Chorismate mutase type II APP_28230 PF00793 DAHP synthetase I family APP_28250 PF06103 Bacterial protein of unknown function (DUF948) APP_28260 PF02073 Thermophilic metalloprotease (M29) APP_28270 PF01225 Mur ligase family, catalytic domain APP_28270 PF08245 Mur ligase middle domain APP_28270 PF02875 Mur ligase family, glutamate ligase domain APP_28280 PF01580 FtsK/SpoIIIE family APP_28280 PF09397 Ftsk gamma domain APP_28280 PF17854 FtsK alpha domain APP_28290 PF16491 CAAX prenyl protease N-terminal, five membrane helices APP_28290 PF01435 Peptidase family M48 APP_28310 PF03591 AzlC protein APP_28320 PF01381 Helix-turn-helix APP_28320 PF07883 Cupin domain APP_28330 PF00005 ABC transporter APP_28340 PF02653 Branched-chain amino acid transport system / permease component APP_28360 PF12706 Beta-lactamase superfamily domain APP_28370 PF00356 Bacterial regulatory proteins, lacI family APP_28400 PF01208 Uroporphyrinogen decarboxylase (URO-D) APP_28410 PF00912 Transglycosylase APP_28410 PF00905 Penicillin binding protein transpeptidase domain APP_28420 PF03992 Antibiotic biosynthesis monooxygenase APP_28430 PF00005 ABC transporter APP_28440 PF05975 Bacterial ABC transporter protein EcsB APP_28450 PF01230 HIT domain APP_28460 PF00266 Aminotransferase class-V APP_28470 PF17099 Tryptophan transporter TrpP APP_28490 PF12732 YtxH-like protein APP_28500 PF01047 MarR family APP_28510 PF08963 Protein of unknown function (DUF1878) APP_28530 PF05698 Bacterial trigger factor protein (TF) C-terminus APP_28540 PF14147 Sporulation protein YhaL APP_28550 PF01966 HD domain APP_28560 PF13514 AAA domain APP_28570 PF00149 Calcineurin-like phosphoesterase APP_28600 PF04055 Radical SAM superfamily APP_28620 PF00480 ROK family APP_28620 PF01047 MarR family APP_28640 PF01272 Transcription elongation factor, GreA/GreB, C-term APP_28640 PF03449 Transcription elongation factor, N-terminal APP_28650 PF06133 Control of competence regulator ComK, YlbF/YmcA APP_28660 PF05504 Spore germination B3/ GerAC like, C-terminal APP_28690 PF03323 Bacillus/Clostridium GerA spore germination protein APP_28700 PF04286 Protein of unknown function (DUF445) APP_28720 PF14398 YheC/D like ATP-grasp APP_28730 PF14398 YheC/D like ATP-grasp APP_28740 PF14398 YheC/D like ATP-grasp APP_28770 PF00269 Small, acid-soluble spore proteins, alpha/beta type APP_28790 PF03466 LysR substrate binding domain APP_28790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APP_28850 PF12399 Branched-chain amino acid ATP-binding cassette transporter APP_28850 PF00005 ABC transporter APP_28860 PF00005 ABC transporter APP_28870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APP_28880 PF00011 Hsp20/alpha crystallin family APP_28890 PF00317 Ribonucleotide reductase, all-alpha domain APP_28890 PF02867 Ribonucleotide reductase, barrel domain APP_28890 PF03477 ATP cone domain APP_28900 PF00268 Ribonucleotide reductase, small chain APP_28920 PF02537 CrcB-like protein, Camphor Resistance (CrcB) APP_28930 PF02537 CrcB-like protein, Camphor Resistance (CrcB) APP_28940 PF01594 AI-2E family transporter APP_28970 PF03741 Integral membrane protein TerC family APP_28980 PF04293 SpoVR like protein APP_28990 PF00042 Globin APP_28990 PF00970 Oxidoreductase FAD-binding domain APP_28990 PF00175 Oxidoreductase NAD-binding domain APP_29000 PF02082 Transcriptional regulator APP_29010 PF14148 YhdB-like protein APP_29020 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APP_29020 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APP_29020 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APP_29020 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APP_29030 PF00571 CBS domain APP_29040 PF02600 Disulfide bond formation protein DsbB APP_29060 PF00248 Aldo/keto reductase family APP_29070 PF02525 Flavodoxin-like fold APP_29090 PF09335 SNARE associated Golgi protein APP_29100 PF02803 Thiolase, C-terminal domain APP_29100 PF00108 Thiolase, N-terminal domain APP_29110 PF00501 AMP-binding enzyme APP_29110 PF13193 AMP-binding enzyme C-terminal domain APP_29120 PF02632 BioY family APP_29130 PF02096 60Kd inner membrane protein APP_29140 PF04285 Protein of unknown function (DUF444) APP_29150 PF08298 PrkA AAA domain APP_29150 PF06798 PrkA serine protein kinase C-terminal domain APP_29160 PF00465 Iron-containing alcohol dehydrogenase APP_29170 PF00588 SpoU rRNA Methylase family APP_29180 PF12671 Putative amidase domain APP_29190 PF08331 Domain of unknown function (DUF1730) APP_29210 PF00291 Pyridoxal-phosphate dependent enzyme APP_29250 PF13649 Methyltransferase domain APP_29260 PF03358 NADPH-dependent FMN reductase APP_29270 PF08220 DeoR-like helix-turn-helix domain APP_29270 PF00455 DeoR C terminal sensor domain APP_29280 PF07690 Major Facilitator Superfamily APP_29290 PF08240 Alcohol dehydrogenase GroES-like domain APP_29290 PF00107 Zinc-binding dehydrogenase APP_29300 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APP_29300 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APP_29310 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APP_29310 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APP_29320 PF00107 Zinc-binding dehydrogenase APP_29320 PF08240 Alcohol dehydrogenase GroES-like domain APP_29330 PF00171 Aldehyde dehydrogenase family APP_29340 PF00465 Iron-containing alcohol dehydrogenase APP_29350 PF13188 PAS domain APP_29350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APP_29350 PF00512 His Kinase A (phospho-acceptor) domain APP_29350 PF00989 PAS fold APP_29350 PF13426 PAS domain APP_29360 PF02954 Bacterial regulatory protein, Fis family APP_29360 PF00072 Response regulator receiver domain APP_29360 PF00158 Sigma-54 interaction domain APP_29370 PF02817 e3 binding domain APP_29370 PF00364 Biotin-requiring enzyme APP_29370 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APP_29380 PF02780 Transketolase, C-terminal domain APP_29380 PF02779 Transketolase, pyrimidine binding domain APP_29390 PF00676 Dehydrogenase E1 component APP_29410 PF00158 Sigma-54 interaction domain APP_29410 PF01590 GAF domain APP_29410 PF02954 Bacterial regulatory protein, Fis family APP_29420 PF09375 Imelysin APP_29430 PF04261 Dyp-type peroxidase family APP_29430 PF10518 TAT (twin-arginine translocation) pathway signal sequence APP_29460 PF13460 NAD(P)H-binding APP_29470 PF00296 Luciferase-like monooxygenase APP_29490 PF02082 Transcriptional regulator APP_29500 PF01810 LysE type translocator APP_29550 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APP_29550 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APP_29560 PF00230 Major intrinsic protein APP_29570 PF00381 PTS HPr component phosphorylation site APP_29580 PF00381 PTS HPr component phosphorylation site APP_29580 PF03610 PTS system fructose IIA component APP_29580 PF05524 PEP-utilising enzyme, N-terminal APP_29580 PF00391 PEP-utilising enzyme, mobile domain APP_29590 PF02734 DAK2 domain APP_29600 PF02733 Dak1 domain APP_29610 PF00158 Sigma-54 interaction domain APP_29610 PF02954 Bacterial regulatory protein, Fis family APP_29610 PF00989 PAS fold APP_29620 PF04309 Glycerol-3-phosphate responsive antiterminator APP_29630 PF01266 FAD dependent oxidoreductase APP_29630 PF16901 C-terminal domain of alpha-glycerophosphate oxidase APP_29660 PF01609 Transposase DDE domain APP_29690 PF00145 C-5 cytosine-specific DNA methylase APP_29700 PF09556 HaeIII restriction endonuclease APP_29710 PF01520 N-acetylmuramoyl-L-alanine amidase APP_29710 PF05036 Sporulation related domain APP_30060 PF05866 Endodeoxyribonuclease RusA APP_30090 PF03796 DnaB-like helicase C terminal domain APP_30090 PF00772 DnaB-like helicase N terminal domain APP_30110 PF03837 RecT family APP_30120 PF09588 YqaJ-like viral recombinase domain APP_30190 PF00589 Phage integrase family APP_30190 PF02899 Phage integrase, N-terminal SAM-like domain APP_30200 PF11023 Zinc-ribbon containing domain APP_30210 PF01475 Ferric uptake regulator family APP_30220 PF00578 AhpC/TSA family APP_30230 PF07885 Ion channel APP_30260 PF00005 ABC transporter APP_30270 PF00202 Aminotransferase class-III APP_30280 PF06081 Aromatic acid exporter family member 1 APP_30300 PF00005 ABC transporter APP_30300 PF00664 ABC transporter transmembrane region APP_30310 PF04167 Protein of unknown function (DUF402) APP_30330 PF02673 Bacitracin resistance protein BacA APP_30340 PF04259 Small, acid-soluble spore protein, gamma-type APP_30370 PF00730 HhH-GPD superfamily base excision DNA repair protein APP_30370 PF14815 NUDIX domain APP_30380 PF04307 LexA-binding, inner membrane-associated putative hydrolase APP_30390 PF08176 Small acid-soluble spore protein K family APP_30410 PF08838 Protein of unknown function (DUF1811) APP_30420 PF02631 RecX family APP_30440 PF00171 Aldehyde dehydrogenase family APP_30450 PF00696 Amino acid kinase family APP_30450 PF01472 PUA domain APP_30490 PF03741 Integral membrane protein TerC family APP_30500 PF03466 LysR substrate binding domain APP_30500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APP_30510 PF00205 Thiamine pyrophosphate enzyme, central domain APP_30510 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APP_30510 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APP_30520 PF07690 Major Facilitator Superfamily APP_30530 PF13180 PDZ domain APP_30550 PF04960 Glutaminase APP_30560 PF07690 Major Facilitator Superfamily APP_30570 PF03466 LysR substrate binding domain APP_30570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APP_30600 PF00155 Aminotransferase class I and II APP_30610 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APP_30610 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APP_30610 PF01842 ACT domain APP_30620 PF01758 Sodium Bile acid symporter family APP_30630 PF03992 Antibiotic biosynthesis monooxygenase APP_30640 PF01053 Cys/Met metabolism PLP-dependent enzyme APP_30680 PF02525 Flavodoxin-like fold APP_30720 PF13411 MerR HTH family regulatory protein APP_30720 PF07739 TipAS antibiotic-recognition domain APP_30750 PF07690 Major Facilitator Superfamily APP_30760 PF01435 Peptidase family M48 APP_30770 PF02694 Uncharacterised BCR, YnfA/UPF0060 family APP_30800 PF00781 Diacylglycerol kinase catalytic domain APP_30840 PF08240 Alcohol dehydrogenase GroES-like domain APP_30840 PF00107 Zinc-binding dehydrogenase APP_30850 PF00596 Class II Aldolase and Adducin N-terminal domain APP_30860 PF08240 Alcohol dehydrogenase GroES-like domain APP_30860 PF00107 Zinc-binding dehydrogenase APP_30890 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APP_30890 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APP_30910 PF01527 Transposase APP_30920 PF13276 HTH-like domain APP_30920 PF00665 Integrase core domain APP_30920 PF13333 Integrase core domain APP_30980 PF00005 ABC transporter APP_31000 PF02668 Taurine catabolism dioxygenase TauD, TfdA family APP_31010 PF03819 MazG nucleotide pyrophosphohydrolase domain APP_31020 PF00440 Bacterial regulatory proteins, tetR family APP_31020 PF17932 Tetracyclin repressor-like, C-terminal domain APP_31070 PF00392 Bacterial regulatory proteins, gntR family APP_31070 PF07729 FCD domain APP_31080 PF02615 Malate/L-lactate dehydrogenase APP_31090 PF02615 Malate/L-lactate dehydrogenase APP_31100 PF01842 ACT domain APP_31100 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APP_31100 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APP_31110 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus APP_31120 PF08666 SAF domain APP_31120 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus APP_31160 PF00072 Response regulator receiver domain APP_31160 PF00196 Bacterial regulatory proteins, luxR family APP_31220 PF00005 ABC transporter APP_31250 PF01434 Peptidase family M41 APP_31250 PF17862 AAA+ lid domain APP_31250 PF00004 ATPase family associated with various cellular activities (AAA) APP_31250 PF06480 FtsH Extracellular APP_31330 PF03621 MbtH-like protein APP_31340 PF13193 AMP-binding enzyme C-terminal domain APP_31340 PF00501 AMP-binding enzyme APP_31340 PF00975 Thioesterase domain APP_31340 PF00668 Condensation domain APP_31340 PF00550 Phosphopantetheine attachment site APP_31350 PF00550 Phosphopantetheine attachment site APP_31350 PF00857 Isochorismatase family APP_31360 PF00501 AMP-binding enzyme APP_31360 PF13193 AMP-binding enzyme C-terminal domain APP_31370 PF00425 chorismate binding enzyme APP_31380 PF00106 short chain dehydrogenase APP_31450 PF03050 Transposase IS66 family APP_31450 PF13007 Transposase C of IS166 homeodomain APP_31450 PF13817 IS66 C-terminal element APP_31450 PF13005 zinc-finger binding domain of transposase IS66 APP_31470 PF00005 ABC transporter APP_31490 PF00367 phosphotransferase system, EIIB APP_31490 PF02378 Phosphotransferase system, EIIC APP_31500 PF02056 Family 4 glycosyl hydrolase APP_31500 PF11975 Family 4 glycosyl hydrolase C-terminal domain APP_31510 PF01418 Helix-turn-helix domain, rpiR family APP_31510 PF01380 SIS domain APP_31520 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 APP_31590 PF12538 DNA transporter APP_31590 PF01580 FtsK/SpoIIIE family APP_31600 PF10140 WXG100 protein secretion system (Wss), protein YukC APP_31640 PF06013 Proteins of 100 residues with WXG APP_31710 PF13408 Recombinase zinc beta ribbon domain APP_31710 PF07508 Recombinase APP_31720 PF01938 TRAM domain APP_31720 PF05958 tRNA (Uracil-5-)-methyltransferase APP_31730 PF00730 HhH-GPD superfamily base excision DNA repair protein APP_31740 PF01522 Polysaccharide deacetylase APP_31750 PF05683 Fumarase C-terminus APP_31750 PF05681 Fumarate hydratase (Fumerase) APP_31760 PF00155 Aminotransferase class I and II APP_31770 PF00795 Carbon-nitrogen hydrolase APP_31780 PF01008 Initiation factor 2 subunit family APP_31790 PF01636 Phosphotransferase enzyme family APP_31800 PF03079 ARD/ARD' family APP_31810 PF00596 Class II Aldolase and Adducin N-terminal domain APP_31830 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain APP_31830 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain APP_31910 PF08756 YfkB-like domain APP_31910 PF04055 Radical SAM superfamily APP_31920 PF14167 YfkD-like protein APP_31930 PF01699 Sodium/calcium exchanger protein APP_31940 PF17932 Tetracyclin repressor-like, C-terminal domain APP_31940 PF00440 Bacterial regulatory proteins, tetR family APP_31960 PF00881 Nitroreductase family APP_32000 PF03631 Virulence factor BrkB APP_32020 PF01451 Low molecular weight phosphotyrosine protein phosphatase APP_32030 PF06569 Protein of unknown function (DUF1128) APP_32050 PF09350 Domain of unknown function (DUF1992) APP_32060 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) APP_32070 PF04235 Protein of unknown function (DUF418) APP_32080 PF09515 Thiamine transporter protein (Thia_YuaJ) APP_32090 PF13378 Enolase C-terminal domain-like APP_32090 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain APP_32100 PF00795 Carbon-nitrogen hydrolase APP_32110 PF00392 Bacterial regulatory proteins, gntR family APP_32110 PF00155 Aminotransferase class I and II APP_32150 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APP_32150 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APP_32150 PF02770 Acyl-CoA dehydrogenase, middle domain APP_32170 PF01638 HxlR-like helix-turn-helix APP_32180 PF00005 ABC transporter APP_32200 PF00528 Binding-protein-dependent transport system inner membrane component APP_32210 PF04309 Glycerol-3-phosphate responsive antiterminator APP_32220 PF13416 Bacterial extracellular solute-binding protein APP_32230 PF00528 Binding-protein-dependent transport system inner membrane component APP_32240 PF00528 Binding-protein-dependent transport system inner membrane component APP_32250 PF00005 ABC transporter APP_32250 PF03459 TOBE domain APP_32250 PF17912 MalK OB fold domain APP_32280 PF02602 Uroporphyrinogen-III synthase HemD APP_32310 PF01497 Periplasmic binding protein APP_32320 PF00005 ABC transporter APP_32330 PF01032 FecCD transport family APP_32340 PF01032 FecCD transport family APP_32350 PF00583 Acetyltransferase (GNAT) family APP_32370 PF00664 ABC transporter transmembrane region APP_32370 PF00005 ABC transporter APP_32380 PF00664 ABC transporter transmembrane region APP_32380 PF00005 ABC transporter APP_32390 PF06628 Catalase-related immune-responsive APP_32390 PF00199 Catalase APP_32400 PF07690 Major Facilitator Superfamily APP_32420 PF13416 Bacterial extracellular solute-binding protein APP_32430 PF00528 Binding-protein-dependent transport system inner membrane component APP_32440 PF00528 Binding-protein-dependent transport system inner membrane component APP_32450 PF00005 ABC transporter APP_32450 PF08402 TOBE domain APP_32470 PF00072 Response regulator receiver domain APP_32480 PF01202 Shikimate kinase APP_32500 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component APP_32510 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component APP_32520 PF03480 Bacterial extracellular solute-binding protein, family 7 APP_32540 PF00205 Thiamine pyrophosphate enzyme, central domain APP_32540 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APP_32540 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APP_32550 PF08240 Alcohol dehydrogenase GroES-like domain APP_32550 PF00107 Zinc-binding dehydrogenase APP_32560 PF00171 Aldehyde dehydrogenase family APP_32580 PF00563 EAL domain APP_32580 PF03707 Bacterial signalling protein N terminal repeat APP_32580 PF00990 Diguanylate cyclase, GGDEF domain APP_32590 PF02378 Phosphotransferase system, EIIC APP_32590 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APP_32600 PF05043 Mga helix-turn-helix domain APP_32600 PF08279 HTH domain APP_32600 PF00874 PRD domain APP_32600 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APP_32600 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APP_32610 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APP_32620 PF01232 Mannitol dehydrogenase Rossmann domain APP_32620 PF08125 Mannitol dehydrogenase C-terminal domain APP_32650 PF06738 Putative threonine/serine exporter APP_32660 PF00440 Bacterial regulatory proteins, tetR family APP_32660 PF17922 Tetracyclin repressor-like, C-terminal domain APP_32670 PF07690 Major Facilitator Superfamily APP_32680 PF00108 Thiolase, N-terminal domain APP_32680 PF02803 Thiolase, C-terminal domain APP_32690 PF07687 Peptidase dimerisation domain APP_32690 PF01546 Peptidase family M20/M25/M40 APP_32700 PF00999 Sodium/hydrogen exchanger family APP_32710 PF02080 TrkA-C domain APP_32720 PF00589 Phage integrase family APP_32740 PF12729 Four helix bundle sensory module for signal transduction APP_32740 PF00672 HAMP domain APP_32740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APP_32750 PF00324 Amino acid permease APP_32760 PF07969 Amidohydrolase family APP_32780 PF09827 CRISPR associated protein Cas2 APP_32790 PF01867 CRISPR associated protein Cas1 APP_32830 PF09704 CRISPR-associated protein (Cas_Cas5) APP_32860 PF00440 Bacterial regulatory proteins, tetR family APP_32890 PF00005 ABC transporter APP_32910 PF03992 Antibiotic biosynthesis monooxygenase APP_32920 PF00005 ABC transporter APP_32930 PF01032 FecCD transport family APP_32940 PF01497 Periplasmic binding protein APP_32950 PF04203 Sortase domain APP_32960 PF00005 ABC transporter APP_32970 PF01032 FecCD transport family APP_32980 PF01497 Periplasmic binding protein APP_32990 PF05031 Iron Transport-associated domain APP_33000 PF05031 Iron Transport-associated domain APP_33020 PF00005 ABC transporter APP_33040 PF13556 PucR C-terminal helix-turn-helix domain APP_33040 PF17853 GGDEF-like domain APP_33040 PF06018 CodY GAF-like domain APP_33050 PF05222 Alanine dehydrogenase/PNT, N-terminal domain APP_33050 PF01262 Alanine dehydrogenase/PNT, C-terminal domain APP_33070 PF03992 Antibiotic biosynthesis monooxygenase APP_33080 PF06039 Malate:quinone oxidoreductase (Mqo) APP_33090 PF00440 Bacterial regulatory proteins, tetR family APP_33100 PF13193 AMP-binding enzyme C-terminal domain APP_33100 PF00501 AMP-binding enzyme APP_33110 PF00083 Sugar (and other) transporter APP_33110 PF07690 Major Facilitator Superfamily APP_33130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APP_33130 PF03466 LysR substrate binding domain APP_33140 PF02667 Short chain fatty acid transporter APP_33280 PF07508 Recombinase APP_33280 PF13408 Recombinase zinc beta ribbon domain APP_33370 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APP_33370 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APP_33370 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APP_33370 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APP_33400 PF01938 TRAM domain APP_33400 PF05958 tRNA (Uracil-5-)-methyltransferase APP_33420 PF00781 Diacylglycerol kinase catalytic domain APP_33430 PF02637 GatB domain APP_33430 PF02934 GatB/GatE catalytic domain APP_33440 PF01425 Amidase APP_33450 PF02686 Glu-tRNAGln amidotransferase C subunit APP_33470 PF07537 CamS sex pheromone cAM373 precursor APP_33480 PF00533 BRCA1 C Terminus (BRCT) domain APP_33480 PF03120 NAD-dependent DNA ligase OB-fold domain APP_33480 PF03119 NAD-dependent DNA ligase C4 zinc finger domain APP_33480 PF01653 NAD-dependent DNA ligase adenylation domain APP_33480 PF12826 Helix-hairpin-helix motif APP_33490 PF00580 UvrD/REP helicase N-terminal domain APP_33490 PF13361 UvrD-like helicase C-terminal domain APP_33500 PF01884 PcrB family APP_33510 PF01371 Trp repressor protein APP_33520 PF11258 Protein of unknown function (DUF3048) N-terminal domain APP_33520 PF17479 Protein of unknown function (DUF3048) C-terminal domain APP_33530 PF13382 Adenine deaminase C-terminal domain APP_33530 PF01979 Amidohydrolase family APP_33540 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain APP_33540 PF02844 Phosphoribosylglycinamide synthetase, N domain APP_33540 PF02843 Phosphoribosylglycinamide synthetase, C domain APP_33550 PF01808 AICARFT/IMPCHase bienzyme APP_33550 PF02142 MGS-like domain APP_33560 PF00551 Formyl transferase APP_33570 PF02769 AIR synthase related protein, C-terminal domain APP_33570 PF00586 AIR synthase related protein, N-terminal domain APP_33580 PF00156 Phosphoribosyl transferase domain APP_33590 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain APP_33590 PF02769 AIR synthase related protein, C-terminal domain APP_33590 PF00586 AIR synthase related protein, N-terminal domain APP_33610 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase APP_33620 PF01259 SAICAR synthetase APP_33630 PF00206 Lyase APP_33630 PF10397 Adenylosuccinate lyase C-terminus APP_33640 PF02222 ATP-grasp domain APP_33640 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain APP_33650 PF00731 AIR carboxylase APP_33660 PF00860 Permease family APP_33680 PF02540 NAD synthase APP_33680 PF00958 GMP synthase C terminal domain APP_33680 PF00117 Glutamine amidotransferase class-I APP_33690 PF01841 Transglutaminase-like superfamily APP_33690 PF13559 Domain of unknown function (DUF4129) APP_33690 PF11992 Domain of unknown function (DUF3488) APP_33700 PF01882 Protein of unknown function DUF58 APP_33710 PF07726 ATPase family associated with various cellular activities (AAA) APP_33710 PF17863 AAA lid domain APP_33770 PF02954 Bacterial regulatory protein, Fis family APP_33770 PF06505 Activator of aromatic catabolism APP_33770 PF02830 V4R domain APP_33770 PF00158 Sigma-54 interaction domain APP_33790 PF00866 Ring hydroxylating beta subunit APP_33800 PF00355 Rieske [2Fe-2S] domain APP_33800 PF00848 Ring hydroxylating alpha subunit (catalytic domain) APP_33810 PF00005 ABC transporter APP_33820 PF12399 Branched-chain amino acid ATP-binding cassette transporter APP_33820 PF00005 ABC transporter APP_33830 PF02653 Branched-chain amino acid transport system / permease component APP_33830 PF11862 Domain of unknown function (DUF3382) APP_33840 PF02653 Branched-chain amino acid transport system / permease component APP_33860 PF00465 Iron-containing alcohol dehydrogenase APP_33870 PF00171 Aldehyde dehydrogenase family APP_33890 PF00171 Aldehyde dehydrogenase family APP_33910 PF01557 Fumarylacetoacetate (FAA) hydrolase family APP_33920 PF01557 Fumarylacetoacetate (FAA) hydrolase family APP_33930 PF00701 Dihydrodipicolinate synthetase family APP_33940 PF01687 Riboflavin kinase APP_33940 PF06574 FAD synthetase APP_33950 PF01613 Flavin reductase like domain APP_33960 PF00171 Aldehyde dehydrogenase family APP_33970 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APP_33980 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal APP_33980 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal APP_33990 PF03466 LysR substrate binding domain APP_33990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APP_34010 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APP_34010 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APP_34020 PF00083 Sugar (and other) transporter APP_34020 PF07690 Major Facilitator Superfamily APP_34060 PF08240 Alcohol dehydrogenase GroES-like domain APP_34060 PF00107 Zinc-binding dehydrogenase APP_34080 PF00107 Zinc-binding dehydrogenase APP_34080 PF08240 Alcohol dehydrogenase GroES-like domain APP_34090 PF03611 PTS system sugar-specific permease component APP_34100 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APP_34110 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APP_34110 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APP_34110 PF02378 Phosphotransferase system, EIIC APP_34130 PF00795 Carbon-nitrogen hydrolase APP_34150 PF04231 Endonuclease I APP_34160 PF00753 Metallo-beta-lactamase superfamily APP_34170 PF00255 Glutathione peroxidase APP_34200 PF03612 Sorbitol phosphotransferase enzyme II N-terminus APP_34200 PF07663 Sorbitol phosphotransferase enzyme II C-terminus APP_34210 PF03608 PTS system enzyme II sorbitol-specific factor APP_34240 PF00106 short chain dehydrogenase APP_34260 PF00989 PAS fold APP_34260 PF16736 Single Cache-like APP_34260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APP_34260 PF00512 His Kinase A (phospho-acceptor) domain APP_34270 PF00486 Transcriptional regulatory protein, C terminal APP_34270 PF00072 Response regulator receiver domain APP_34310 PF00005 ABC transporter APP_34360 PF13732 Domain of unknown function (DUF4162) APP_34360 PF00005 ABC transporter APP_34380 PF08281 Sigma-70, region 4 APP_34380 PF04542 Sigma-70 region 2 APP_34390 PF01979 Amidohydrolase family APP_34400 PF02817 e3 binding domain APP_34400 PF00364 Biotin-requiring enzyme APP_34400 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APP_34440 PF00171 Aldehyde dehydrogenase family APP_34450 PF00202 Aminotransferase class-III APP_34470 PF00392 Bacterial regulatory proteins, gntR family APP_34470 PF00155 Aminotransferase class I and II APP_34480 PF04166 Pyridoxal phosphate biosynthetic protein PdxA APP_34520 PF13193 AMP-binding enzyme C-terminal domain APP_34520 PF00501 AMP-binding enzyme APP_34530 PF01575 MaoC like domain APP_34540 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APP_34540 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APP_34570 PF12399 Branched-chain amino acid ATP-binding cassette transporter APP_34570 PF00005 ABC transporter APP_34580 PF00005 ABC transporter APP_34590 PF02653 Branched-chain amino acid transport system / permease component APP_34650 PF07155 ECF-type riboflavin transporter, S component APP_34660 PF12558 ATP-binding cassette cobalt transporter APP_34660 PF00005 ABC transporter APP_34680 PF16363 GDP-mannose 4,6 dehydratase APP_34690 PF00483 Nucleotidyl transferase APP_34690 PF01050 Mannose-6-phosphate isomerase APP_34710 PF00534 Glycosyl transferases group 1 APP_34710 PF13439 Glycosyltransferase Family 4 APP_34750 PF01501 Glycosyl transferase family 8 APP_34750 PF00535 Glycosyl transferase family 2 APP_34800 PF08666 SAF domain APP_34800 PF03102 NeuB family APP_34850 PF02348 Cytidylyltransferase APP_34860 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APP_34870 PF02719 Polysaccharide biosynthesis protein APP_34880 PF02397 Bacterial sugar transferase APP_34890 PF00483 Nucleotidyl transferase APP_34910 PF13614 AAA domain APP_34920 PF02706 Chain length determinant protein APP_34920 PF13807 G-rich domain on putative tyrosine kinase APP_34950 PF04434 SWIM zinc finger APP_34960 PF12419 SNF2 Helicase protein APP_34960 PF00271 Helicase conserved C-terminal domain APP_34960 PF00176 SNF2 family N-terminal domain APP_34970 PF00436 Single-strand binding protein family APP_34990 PF01381 Helix-turn-helix APP_35000 PF14183 YwpF-like protein APP_35020 PF07977 FabA-like domain APP_35040 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APP_35040 PF00460 Flagella basal body rod protein APP_35050 PF00460 Flagella basal body rod protein APP_35050 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APP_35070 PF12116 Stage III sporulation protein D APP_35080 PF02626 Carboxyltransferase domain, subdomain A and B APP_35090 PF03746 LamB/YcsF family APP_35100 PF02682 Carboxyltransferase domain, subdomain C and D APP_35110 PF00583 Acetyltransferase (GNAT) family APP_35120 PF01551 Peptidase family M23 APP_35140 PF08486 Stage II sporulation protein APP_35150 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APP_35160 PF08680 TATA-box binding APP_35170 PF06612 Protein of unknown function (DUF1146) APP_35180 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain APP_35180 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain APP_35190 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APP_35190 PF02874 ATP synthase alpha/beta family, beta-barrel domain APP_35200 PF00231 ATP synthase APP_35210 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APP_35210 PF02874 ATP synthase alpha/beta family, beta-barrel domain APP_35210 PF00306 ATP synthase alpha/beta chain, C terminal domain APP_35220 PF00213 ATP synthase delta (OSCP) subunit APP_35230 PF00430 ATP synthase B/B' CF(0) APP_35240 PF00137 ATP synthase subunit C APP_35250 PF00119 ATP synthase A chain APP_35260 PF03899 ATP synthase I chain APP_35280 PF13860 FlgD Ig-like domain APP_35280 PF05922 Peptidase inhibitor I9 APP_35280 PF00082 Subtilase family APP_35280 PF02225 PA domain APP_35300 PF00464 Serine hydroxymethyltransferase APP_35310 PF04260 Protein of unknown function (DUF436) APP_35320 PF02502 Ribose/Galactose Isomerase APP_35330 PF00672 HAMP domain APP_35330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APP_35330 PF02743 Cache domain APP_35340 PF01451 Low molecular weight phosphotyrosine protein phosphatase APP_35350 PF02659 Putative manganese efflux pump APP_35360 PF03481 Putative GTP-binding controlling metal-binding APP_35360 PF01300 Telomere recombination APP_35380 PF09551 Stage II sporulation protein R (spore_II_R) APP_35390 PF13847 Methyltransferase domain APP_35390 PF17827 PrmC N-terminal domain APP_35400 PF00472 RF-1 domain APP_35400 PF03462 PCRF domain APP_35410 PF13411 MerR HTH family regulatory protein APP_35440 PF00265 Thymidine kinase APP_35450 PF01197 Ribosomal protein L31 APP_35460 PF07498 Rho termination factor, N-terminal domain APP_35460 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APP_35460 PF07497 Rho termination factor, RNA-binding domain APP_35470 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded APP_35480 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APP_35490 PF00923 Transaldolase/Fructose-6-phosphate aldolase APP_35500 PF01116 Fructose-bisphosphate aldolase class-II APP_35510 PF00072 Response regulator receiver domain APP_35520 PF10740 Domain of unknown function (DUF2529) APP_35540 PF06418 CTP synthase N-terminus APP_35540 PF00117 Glutamine amidotransferase class-I APP_35550 PF05066 HB1, ASXL, restriction endonuclease HTH domain APP_35560 PF02754 Cysteine-rich domain APP_35560 PF13183 4Fe-4S dicluster domain APP_35570 PF04542 Sigma-70 region 2 APP_35570 PF08281 Sigma-70, region 4 APP_35580 PF00750 tRNA synthetases class I (R) APP_35580 PF05746 DALR anticodon binding domain APP_35580 PF03485 Arginyl tRNA synthetase N terminal domain APP_35590 PF09148 Domain of unknown function (DUF1934) APP_35600 PF00491 Arginase family APP_35610 PF17284 Spermidine synthase tetramerisation domain APP_35620 PF00912 Transglycosylase APP_35620 PF00905 Penicillin binding protein transpeptidase domain APP_35630 PF03099 Biotin/lipoate A/B protein ligase family APP_35640 PF11724 YvbH-like oligomerisation region APP_35640 PF08000 Bacterial PH domain APP_35660 PF07293 Protein of unknown function (DUF1450) APP_35670 PF01966 HD domain APP_35690 PF02163 Peptidase family M50 APP_35700 PF08741 YwhD family APP_35720 PF01515 Phosphate acetyl/butaryl transferase APP_35740 PF07486 Cell Wall Hydrolase APP_35750 PF09671 Spore coat protein (Spore_GerQ) APP_35760 PF00115 Cytochrome C and Quinol oxidase polypeptide I APP_35770 PF09125 Cytochrome C oxidase subunit II, transmembrane APP_35770 PF00116 Cytochrome C oxidase subunit II, periplasmic domain APP_35790 PF04241 Protein of unknown function (DUF423) APP_35800 PF17261 Family of unknown function (DUF5327) APP_35810 PF17284 Spermidine synthase tetramerisation domain APP_35840 PF03167 Uracil DNA glycosylase superfamily APP_35870 PF18665 Tetracyclin repressor-like, C-terminal domain APP_35870 PF00440 Bacterial regulatory proteins, tetR family APP_35880 PF08543 Phosphomethylpyrimidine kinase APP_35890 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family APP_35890 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain APP_35890 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain APP_35900 PF03009 Glycerophosphoryl diester phosphodiesterase family APP_35920 PF00588 SpoU rRNA Methylase family APP_35920 PF12105 SpoU, rRNA methylase, C-terminal APP_35930 PF03626 Prokaryotic Cytochrome C oxidase subunit IV APP_35940 PF00510 Cytochrome c oxidase subunit III APP_35950 PF00115 Cytochrome C and Quinol oxidase polypeptide I APP_35960 PF02790 Cytochrome C oxidase subunit II, transmembrane domain APP_35970 PF00881 Nitroreductase family APP_35980 PF08267 Cobalamin-independent synthase, N-terminal domain APP_35980 PF01717 Cobalamin-independent synthase, Catalytic domain APP_35990 PF02581 Thiamine monophosphate synthase APP_36000 PF02110 Hydroxyethylthiazole kinase family APP_36010 PF00497 Bacterial extracellular solute-binding proteins, family 3 APP_36030 PF00005 ABC transporter APP_36060 PF13419 Haloacid dehalogenase-like hydrolase APP_36080 PF00561 alpha/beta hydrolase fold APP_36090 PF04264 YceI-like domain APP_36100 PF01717 Cobalamin-independent synthase, Catalytic domain APP_36110 PF00005 ABC transporter APP_36120 PF12399 Branched-chain amino acid ATP-binding cassette transporter APP_36120 PF00005 ABC transporter APP_36140 PF02653 Branched-chain amino acid transport system / permease component APP_36150 PF13458 Periplasmic binding protein APP_36160 PF01261 Xylose isomerase-like TIM barrel APP_36170 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APP_36170 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APP_36180 PF02653 Branched-chain amino acid transport system / permease component APP_36190 PF00005 ABC transporter APP_36200 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APP_36200 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APP_36220 PF01261 Xylose isomerase-like TIM barrel APP_36230 PF00356 Bacterial regulatory proteins, lacI family APP_36240 PF04203 Sortase domain APP_36250 PF00364 Biotin-requiring enzyme APP_36250 PF02817 e3 binding domain APP_36250 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APP_36260 PF02780 Transketolase, C-terminal domain APP_36260 PF02779 Transketolase, pyrimidine binding domain APP_36270 PF00676 Dehydrogenase E1 component APP_36280 PF00158 Sigma-54 interaction domain APP_36280 PF02954 Bacterial regulatory protein, Fis family APP_36280 PF13426 PAS domain APP_36340 PF00528 Binding-protein-dependent transport system inner membrane component APP_36350 PF00528 Binding-protein-dependent transport system inner membrane component APP_36360 PF00005 ABC transporter APP_36380 PF00149 Calcineurin-like phosphoesterase APP_36380 PF02872 5'-nucleotidase, C-terminal domain APP_36410 PF00583 Acetyltransferase (GNAT) family APP_36420 PF00583 Acetyltransferase (GNAT) family APP_36420 PF00795 Carbon-nitrogen hydrolase APP_36460 PF00486 Transcriptional regulatory protein, C terminal APP_36460 PF00072 Response regulator receiver domain APP_36470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APP_36480 PF00005 ABC transporter APP_36500 PF13460 NAD(P)H-binding APP_36510 PF02082 Transcriptional regulator APP_36520 PF00072 Response regulator receiver domain APP_36520 PF08664 YcbB domain APP_36530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APP_36550 PF00375 Sodium:dicarboxylate symporter family APP_36570 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APP_36570 PF02378 Phosphotransferase system, EIIC APP_36590 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APP_36600 PF08125 Mannitol dehydrogenase C-terminal domain APP_36600 PF01232 Mannitol dehydrogenase Rossmann domain APP_36610 PF01380 SIS domain APP_36620 PF00834 Ribulose-phosphate 3 epimerase family APP_36630 PF08220 DeoR-like helix-turn-helix domain APP_36630 PF00455 DeoR C terminal sensor domain APP_36640 PF00440 Bacterial regulatory proteins, tetR family APP_36660 PF00005 ABC transporter APP_36670 PF13454 FAD-NAD(P)-binding APP_36690 PF03061 Thioesterase superfamily APP_36700 PF07992 Pyridine nucleotide-disulphide oxidoreductase APP_36710 PF03466 LysR substrate binding domain APP_36710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APP_36750 PF13538 UvrD-like helicase C-terminal domain APP_36780 PF01061 ABC-2 type transporter APP_36790 PF00056 lactate/malate dehydrogenase, NAD binding domain APP_36790 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain APP_36800 PF02652 L-lactate permease APP_36850 PF02086 D12 class N6 adenine-specific DNA methyltransferase APP_36880 PF00491 Arginase family APP_36900 PF02590 Predicted SPOUT methyltransferase APP_36920 PF13180 PDZ domain APP_36930 PF00753 Metallo-beta-lactamase superfamily APP_36940 PF09648 YycH protein APP_36960 PF13426 PAS domain APP_36960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APP_36960 PF00672 HAMP domain APP_36960 PF00512 His Kinase A (phospho-acceptor) domain APP_36970 PF00486 Transcriptional regulatory protein, C terminal APP_36970 PF00072 Response regulator receiver domain APP_36980 PF00709 Adenylosuccinate synthetase APP_36990 PF00772 DnaB-like helicase N terminal domain APP_36990 PF03796 DnaB-like helicase C terminal domain APP_37000 PF01281 Ribosomal protein L9, N-terminal domain APP_37000 PF03948 Ribosomal protein L9, C-terminal domain APP_37010 PF02272 DHHA1 domain APP_37010 PF01368 DHH family APP_37020 PF09991 Predicted membrane protein (DUF2232) APP_37030 PF01084 Ribosomal protein S18 APP_37040 PF00436 Single-strand binding protein family APP_37050 PF01250 Ribosomal protein S6 APP_37060 PF06071 Protein of unknown function (DUF933) APP_37060 PF01926 50S ribosome-binding GTPase APP_37070 PF06107 Bacterial protein of unknown function (DUF951) APP_37080 PF06866 Protein of unknown function (DUF1256) APP_37090 PF17762 HTH domain found in ParB protein APP_37090 PF02195 ParB-like nuclease domain APP_37100 PF13614 AAA domain APP_37110 PF17762 HTH domain found in ParB protein APP_37110 PF02195 ParB-like nuclease domain APP_37120 PF02527 rRNA small subunit methyltransferase G APP_37130 PF13932 GidA associated domain APP_37130 PF01134 Glucose inhibited division protein A APP_37140 PF10396 GTP-binding protein TrmE N-terminus APP_37140 PF12631 MnmE helical domain APP_37140 PF01926 50S ribosome-binding GTPase APP_37150 PF14804 Jag N-terminus APP_37150 PF01424 R3H domain APP_37160 PF02096 60Kd inner membrane protein APP_37170 PF00825 Ribonuclease P APP_37180 PF00468 Ribosomal protein L34