locus-tag class description JDW14_00005 PF08299 Bacterial dnaA protein helix-turn-helix JDW14_00005 PF00308 Bacterial dnaA protein JDW14_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain JDW14_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain JDW14_00010 PF02767 DNA polymerase III beta subunit, central domain JDW14_00015 PF02557 D-alanyl-D-alanine carboxypeptidase JDW14_00020 PF00578 AhpC/TSA family JDW14_00025 PF02683 Cytochrome C biogenesis protein transmembrane region JDW14_00035 PF02463 RecF/RecN/SMC N terminal domain JDW14_00040 PF00986 DNA gyrase B subunit, carboxyl terminus JDW14_00040 PF00204 DNA gyrase B JDW14_00040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDW14_00040 PF01751 Toprim domain JDW14_00045 PF03989 DNA gyrase C-terminal domain, beta-propeller JDW14_00045 PF00521 DNA gyrase/topoisomerase IV, subunit A JDW14_00050 PF01250 Ribosomal protein S6 JDW14_00055 PF00436 Single-strand binding protein family JDW14_00060 PF01084 Ribosomal protein S18 JDW14_00065 PF01368 DHH family JDW14_00065 PF02272 DHHA1 domain JDW14_00070 PF03948 Ribosomal protein L9, C-terminal domain JDW14_00070 PF01281 Ribosomal protein L9, N-terminal domain JDW14_00075 PF03796 DnaB-like helicase C terminal domain JDW14_00075 PF00772 DnaB-like helicase N terminal domain JDW14_00080 PF00709 Adenylosuccinate synthetase JDW14_00085 PF16916 Dimerisation domain of Zinc Transporter JDW14_00085 PF01545 Cation efflux family JDW14_00095 PF13411 MerR HTH family regulatory protein JDW14_00100 PF03951 Glutamine synthetase, beta-Grasp domain JDW14_00100 PF00120 Glutamine synthetase, catalytic domain JDW14_00105 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JDW14_00110 PF00156 Phosphoribosyl transferase domain JDW14_00115 PF00156 Phosphoribosyl transferase domain JDW14_00115 PF09182 Bacterial purine repressor, N-terminal JDW14_00120 PF00132 Bacterial transferase hexapeptide (six repeats) JDW14_00120 PF00483 Nucleotidyl transferase JDW14_00125 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JDW14_00125 PF14572 Phosphoribosyl synthetase-associated domain JDW14_00130 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family JDW14_00130 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JDW14_00130 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain JDW14_00135 PF02540 NAD synthase JDW14_00140 PF00953 Glycosyl transferase family 4 JDW14_00145 PF02645 Uncharacterised protein, DegV family COG1307 JDW14_00150 PF09186 Domain of unknown function (DUF1949) JDW14_00150 PF01205 Uncharacterized protein family UPF0029 JDW14_00155 PF02645 Uncharacterised protein, DegV family COG1307 JDW14_00160 PF00296 Luciferase-like monooxygenase JDW14_00165 PF04851 Type III restriction enzyme, res subunit JDW14_00165 PF00271 Helicase conserved C-terminal domain JDW14_00175 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JDW14_00175 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus JDW14_00185 PF02810 SEC-C motif JDW14_00185 PF07517 SecA DEAD-like domain JDW14_00185 PF01043 SecA preprotein cross-linking domain JDW14_00185 PF07516 SecA Wing and Scaffold domain JDW14_00195 PF00005 ABC transporter JDW14_00200 PF02687 FtsX-like permease family JDW14_00200 PF18075 FtsX extracellular domain JDW14_00205 PF03459 TOBE domain JDW14_00205 PF00005 ABC transporter JDW14_00205 PF17912 MalK OB fold domain JDW14_00210 PF00692 dUTPase JDW14_00215 PF18073 Rubredoxin metal binding domain JDW14_00225 PF00749 tRNA synthetases class I (E and Q), catalytic domain JDW14_00230 PF01406 tRNA synthetases class I (C) catalytic domain JDW14_00230 PF09190 DALR domain JDW14_00235 PF00636 Ribonuclease III domain JDW14_00240 PF08032 RNA 2'-O ribose methyltransferase substrate binding JDW14_00240 PF00588 SpoU rRNA Methylase family JDW14_00245 PF05991 YacP-like NYN domain JDW14_00255 PF00471 Ribosomal protein L33 JDW14_00260 PF00584 SecE/Sec61-gamma subunits of protein translocation complex JDW14_00265 PF02357 Transcription termination factor nusG JDW14_00270 PF00298 Ribosomal protein L11, RNA binding domain JDW14_00270 PF03946 Ribosomal protein L11, N-terminal domain JDW14_00275 PF00687 Ribosomal protein L1p/L10e family JDW14_00280 PF00466 Ribosomal protein L10 JDW14_00285 PF00542 Ribosomal protein L7/L12 C-terminal domain JDW14_00285 PF16320 Ribosomal protein L7/L12 dimerisation domain JDW14_00290 PF09363 XFP C-terminal domain JDW14_00290 PF09364 XFP N-terminal domain JDW14_00290 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase JDW14_00295 PF00072 Response regulator receiver domain JDW14_00295 PF00486 Transcriptional regulatory protein, C terminal JDW14_00300 PF00512 His Kinase A (phospho-acceptor) domain JDW14_00300 PF00989 PAS fold JDW14_00300 PF18698 Histidine kinase sensor domain JDW14_00300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDW14_00300 PF00672 HAMP domain JDW14_00305 PF00768 D-alanyl-D-alanine carboxypeptidase JDW14_00305 PF07943 Penicillin-binding protein 5, C-terminal domain JDW14_00310 PF01625 Peptide methionine sulfoxide reductase JDW14_00315 PF01797 Transposase IS200 like JDW14_00350 PF03601 Conserved hypothetical protein 698 JDW14_00365 PF04228 Putative neutral zinc metallopeptidase JDW14_00370 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain JDW14_00370 PF01522 Polysaccharide deacetylase JDW14_00375 PF04552 Sigma-54, DNA binding domain JDW14_00375 PF00309 Sigma-54 factor, Activator interacting domain (AID) JDW14_00375 PF04963 Sigma-54 factor, core binding domain JDW14_00390 PF01063 Amino-transferase class IV JDW14_00410 PF02653 Branched-chain amino acid transport system / permease component JDW14_00415 PF00005 ABC transporter JDW14_00415 PF09383 NIL domain JDW14_00430 PF00860 Permease family JDW14_00435 PF02653 Branched-chain amino acid transport system / permease component JDW14_00440 PF11862 Domain of unknown function (DUF3382) JDW14_00440 PF02653 Branched-chain amino acid transport system / permease component JDW14_00445 PF00005 ABC transporter JDW14_00445 PF12399 Branched-chain amino acid ATP-binding cassette transporter JDW14_00450 PF00005 ABC transporter JDW14_00455 PF00478 IMP dehydrogenase / GMP reductase domain JDW14_00455 PF00571 CBS domain JDW14_00460 PF05384 Sensor protein DegS JDW14_00460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDW14_00460 PF07730 Histidine kinase JDW14_00465 PF00072 Response regulator receiver domain JDW14_00465 PF00196 Bacterial regulatory proteins, luxR family JDW14_00470 PF00005 ABC transporter JDW14_00485 PF00164 Ribosomal protein S12/S23 JDW14_00490 PF00177 Ribosomal protein S7p/S5e JDW14_00495 PF00679 Elongation factor G C-terminus JDW14_00495 PF03764 Elongation factor G, domain IV JDW14_00495 PF03144 Elongation factor Tu domain 2 JDW14_00495 PF00009 Elongation factor Tu GTP binding domain JDW14_00495 PF14492 Elongation Factor G, domain II JDW14_00500 PF03144 Elongation factor Tu domain 2 JDW14_00500 PF00009 Elongation factor Tu GTP binding domain JDW14_00500 PF03143 Elongation factor Tu C-terminal domain JDW14_00505 PF05552 Conserved TM helix JDW14_00510 PF00338 Ribosomal protein S10p/S20e JDW14_00515 PF00297 Ribosomal protein L3 JDW14_00520 PF00573 Ribosomal protein L4/L1 family JDW14_00525 PF00276 Ribosomal protein L23 JDW14_00530 PF03947 Ribosomal Proteins L2, C-terminal domain JDW14_00530 PF00181 Ribosomal Proteins L2, RNA binding domain JDW14_00535 PF00203 Ribosomal protein S19 JDW14_00540 PF00237 Ribosomal protein L22p/L17e JDW14_00545 PF00189 Ribosomal protein S3, C-terminal domain JDW14_00545 PF07650 KH domain JDW14_00550 PF00252 Ribosomal protein L16p/L10e JDW14_00555 PF00831 Ribosomal L29 protein JDW14_00560 PF00366 Ribosomal protein S17 JDW14_00565 PF00238 Ribosomal protein L14p/L23e JDW14_00570 PF00467 KOW motif JDW14_00570 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JDW14_00575 PF00281 Ribosomal protein L5 JDW14_00575 PF00673 ribosomal L5P family C-terminus JDW14_00580 PF00253 Ribosomal protein S14p/S29e JDW14_00585 PF00410 Ribosomal protein S8 JDW14_00590 PF00347 Ribosomal protein L6 JDW14_00595 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JDW14_00600 PF00333 Ribosomal protein S5, N-terminal domain JDW14_00600 PF03719 Ribosomal protein S5, C-terminal domain JDW14_00605 PF00327 Ribosomal protein L30p/L7e JDW14_00610 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JDW14_00615 PF00344 SecY translocase JDW14_00620 PF05191 Adenylate kinase, active site lid JDW14_00625 PF01176 Translation initiation factor 1A / IF-1 JDW14_00630 PF00444 Ribosomal protein L36 JDW14_00635 PF00416 Ribosomal protein S13/S18 JDW14_00640 PF00411 Ribosomal protein S11 JDW14_00645 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JDW14_00645 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JDW14_00645 PF01000 RNA polymerase Rpb3/RpoA insert domain JDW14_00650 PF01196 Ribosomal protein L17 JDW14_00655 PF00005 ABC transporter JDW14_00660 PF00005 ABC transporter JDW14_00665 PF00005 ABC transporter JDW14_00670 PF02361 Cobalt transport protein JDW14_00675 PF01416 tRNA pseudouridine synthase JDW14_00680 PF00156 Phosphoribosyl transferase domain JDW14_00685 PF00465 Iron-containing alcohol dehydrogenase JDW14_00690 PF01758 Sodium Bile acid symporter family JDW14_00695 PF00248 Aldo/keto reductase family JDW14_00700 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain JDW14_00700 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain JDW14_00710 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_00715 PF09084 NMT1/THI5 like JDW14_00720 PF00005 ABC transporter JDW14_00735 PF00664 ABC transporter transmembrane region JDW14_00735 PF00005 ABC transporter JDW14_00745 PF02632 BioY family JDW14_00755 PF01321 Creatinase/Prolidase N-terminal domain JDW14_00755 PF00557 Metallopeptidase family M24 JDW14_00765 PF01809 Putative membrane protein insertion efficiency factor JDW14_00770 PF02457 DisA bacterial checkpoint controller nucleotide-binding JDW14_00780 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JDW14_00780 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JDW14_00780 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JDW14_00780 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JDW14_00785 PF08241 Methyltransferase domain JDW14_00790 PF10502 Signal peptidase, peptidase S26 JDW14_00795 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JDW14_00795 PF03129 Anticodon binding domain JDW14_00795 PF09180 Prolyl-tRNA synthetase, C-terminal JDW14_00800 PF00571 CBS domain JDW14_00800 PF03471 Transporter associated domain JDW14_00800 PF01595 Cyclin M transmembrane N-terminal domain JDW14_00805 PF02397 Bacterial sugar transferase JDW14_00815 PF00005 ABC transporter JDW14_00820 PF00950 ABC 3 transport family JDW14_00835 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JDW14_00840 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JDW14_00840 PF07498 Rho termination factor, N-terminal domain JDW14_00840 PF07497 Rho termination factor, RNA-binding domain JDW14_00845 PF04073 Aminoacyl-tRNA editing domain JDW14_00850 PF01596 O-methyltransferase JDW14_00855 PF00664 ABC transporter transmembrane region JDW14_00855 PF00005 ABC transporter JDW14_00885 PF00486 Transcriptional regulatory protein, C terminal JDW14_00885 PF00072 Response regulator receiver domain JDW14_00890 PF13426 PAS domain JDW14_00890 PF00512 His Kinase A (phospho-acceptor) domain JDW14_00890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDW14_00890 PF00672 HAMP domain JDW14_00905 PF00814 Glycoprotease family JDW14_00910 PF00583 Acetyltransferase (GNAT) family JDW14_00920 PF00814 Glycoprotease family JDW14_00925 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JDW14_00930 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_00935 PF12911 N-terminal TM domain of oligopeptide transport permease C JDW14_00935 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_00940 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JDW14_00940 PF00005 ABC transporter JDW14_00945 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JDW14_00945 PF00005 ABC transporter JDW14_00950 PF01381 Helix-turn-helix JDW14_00955 PF00392 Bacterial regulatory proteins, gntR family JDW14_00960 PF00005 ABC transporter JDW14_00975 PF03816 Cell envelope-related transcriptional attenuator domain JDW14_00980 PF00535 Glycosyl transferase family 2 JDW14_00990 PF13439 Glycosyltransferase Family 4 JDW14_00990 PF00534 Glycosyl transferases group 1 JDW14_01015 PF03816 Cell envelope-related transcriptional attenuator domain JDW14_01020 PF02397 Bacterial sugar transferase JDW14_01030 PF03275 UDP-galactopyranose mutase JDW14_01080 PF00293 NUDIX domain JDW14_01085 PF02780 Transketolase, C-terminal domain JDW14_01085 PF02779 Transketolase, pyrimidine binding domain JDW14_01085 PF00456 Transketolase, thiamine diphosphate binding domain JDW14_01090 PF13439 Glycosyltransferase Family 4 JDW14_01090 PF00534 Glycosyl transferases group 1 JDW14_01095 PF00478 IMP dehydrogenase / GMP reductase domain JDW14_01100 PF00005 ABC transporter JDW14_01100 PF12848 ABC transporter JDW14_01110 PF00403 Heavy-metal-associated domain JDW14_01120 PF00293 NUDIX domain JDW14_01125 PF07972 NrdI Flavodoxin like JDW14_01130 PF02867 Ribonucleotide reductase, barrel domain JDW14_01130 PF08343 Ribonucleotide reductase N-terminal JDW14_01130 PF00317 Ribonucleotide reductase, all-alpha domain JDW14_01135 PF00268 Ribonucleotide reductase, small chain JDW14_01140 PF00375 Sodium:dicarboxylate symporter family JDW14_01150 PF00005 ABC transporter JDW14_01155 PF01381 Helix-turn-helix JDW14_01165 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JDW14_01165 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JDW14_01175 PF02798 Glutathione S-transferase, N-terminal domain JDW14_01185 PF01479 S4 domain JDW14_01185 PF00849 RNA pseudouridylate synthase JDW14_01190 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JDW14_01190 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JDW14_01195 PF13673 Acetyltransferase (GNAT) domain JDW14_01205 PF01496 V-type ATPase 116kDa subunit family JDW14_01210 PF00137 ATP synthase subunit C JDW14_01225 PF01990 ATP synthase (F/14-kDa) subunit JDW14_01230 PF02874 ATP synthase alpha/beta family, beta-barrel domain JDW14_01230 PF16886 ATPsynthase alpha/beta subunit N-term extension JDW14_01230 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JDW14_01235 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JDW14_01235 PF02874 ATP synthase alpha/beta family, beta-barrel domain JDW14_01240 PF01813 ATP synthase subunit D JDW14_01250 PF00950 ABC 3 transport family JDW14_01255 PF00950 ABC 3 transport family JDW14_01260 PF00005 ABC transporter JDW14_01265 PF01297 Zinc-uptake complex component A periplasmic JDW14_01275 PF04297 Putative helix-turn-helix protein, YlxM / p13 like JDW14_01280 PF02881 SRP54-type protein, helical bundle domain JDW14_01280 PF00448 SRP54-type protein, GTPase domain JDW14_01280 PF02978 Signal peptide binding domain JDW14_01290 PF01180 Dihydroorotate dehydrogenase JDW14_01295 PF00271 Helicase conserved C-terminal domain JDW14_01295 PF17764 3′ DNA-binding domain (3′BD) JDW14_01295 PF18074 Primosomal protein N C-terminal domain JDW14_01295 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JDW14_01295 PF04851 Type III restriction enzyme, res subunit JDW14_01305 PF01189 16S rRNA methyltransferase RsmB/F JDW14_01305 PF01029 NusB family JDW14_01315 PF03793 PASTA domain JDW14_01315 PF00069 Protein kinase domain JDW14_01320 PF03193 RsgA GTPase JDW14_01320 PF16745 RsgA N-terminal domain JDW14_01325 PF00834 Ribulose-phosphate 3 epimerase family JDW14_01330 PF04263 Thiamin pyrophosphokinase, catalytic domain JDW14_01330 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain JDW14_01335 PF00830 Ribosomal L28 family JDW14_01340 PF03780 Asp23 family, cell envelope-related function JDW14_01345 PF13684 Dihydroxyacetone kinase family JDW14_01345 PF02734 DAK2 domain JDW14_01350 PF00270 DEAD/DEAH box helicase JDW14_01350 PF00271 Helicase conserved C-terminal domain JDW14_01350 PF17191 RecG wedge domain JDW14_01355 PF02504 Fatty acid synthesis protein JDW14_01360 PF00550 Phosphopantetheine attachment site JDW14_01365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JDW14_01365 PF00005 ABC transporter JDW14_01370 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JDW14_01370 PF00005 ABC transporter JDW14_01375 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_01380 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_01385 PF02464 Competence-damaged protein JDW14_01385 PF18146 Damage-inducible protein CinA KH domain JDW14_01385 PF00994 Probable molybdopterin binding domain JDW14_01395 PF05816 Toxic anion resistance protein (TelA) JDW14_01400 PF00455 DeoR C terminal sensor domain JDW14_01400 PF08220 DeoR-like helix-turn-helix domain JDW14_01405 PF00596 Class II Aldolase and Adducin N-terminal domain JDW14_01410 PF02952 L-fucose isomerase, C-terminal domain JDW14_01410 PF07881 L-fucose isomerase, first N-terminal domain JDW14_01410 PF07882 L-fucose isomerase, second N-terminal domain JDW14_01415 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JDW14_01420 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit JDW14_01425 PF00005 ABC transporter JDW14_01430 PF02653 Branched-chain amino acid transport system / permease component JDW14_01440 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JDW14_01440 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JDW14_01445 PF05025 RbsD / FucU transport protein family JDW14_01450 PF00465 Iron-containing alcohol dehydrogenase JDW14_01455 PF01297 Zinc-uptake complex component A periplasmic JDW14_01455 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment JDW14_01460 PF00440 Bacterial regulatory proteins, tetR family JDW14_01465 PF17785 PUA-like domain JDW14_01465 PF10672 S-adenosylmethionine-dependent methyltransferase JDW14_01470 PF00005 ABC transporter JDW14_01485 PF00005 ABC transporter JDW14_01490 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_01500 PF08000 Bacterial PH domain JDW14_01505 PF13407 Periplasmic binding protein domain JDW14_01505 PF00356 Bacterial regulatory proteins, lacI family JDW14_01510 PF02378 Phosphotransferase system, EIIC JDW14_01510 PF00367 phosphotransferase system, EIIB JDW14_01515 PF00251 Glycosyl hydrolases family 32 N-terminal domain JDW14_01515 PF08244 Glycosyl hydrolases family 32 C terminal JDW14_01535 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JDW14_01540 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain JDW14_01540 PF02885 Glycosyl transferase family, helical bundle domain JDW14_01540 PF00591 Glycosyl transferase family, a/b domain JDW14_01545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JDW14_01545 PF03466 LysR substrate binding domain JDW14_01550 PF00132 Bacterial transferase hexapeptide (six repeats) JDW14_01550 PF12464 Maltose acetyltransferase JDW14_01550 PF14602 Hexapeptide repeat of succinyl-transferase JDW14_01560 PF00005 ABC transporter JDW14_01560 PF00664 ABC transporter transmembrane region JDW14_01565 PF00005 ABC transporter JDW14_01565 PF00664 ABC transporter transmembrane region JDW14_01580 PF03830 PTS system sorbose subfamily IIB component JDW14_01585 PF03609 PTS system sorbose-specific iic component JDW14_01590 PF03613 PTS system mannose/fructose/sorbose family IID component JDW14_01595 PF12833 Helix-turn-helix domain JDW14_01595 PF02311 AraC-like ligand binding domain JDW14_01600 PF01547 Bacterial extracellular solute-binding protein JDW14_01605 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_01610 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_01615 PF17385 Lacto-N-biose phosphorylase central domain JDW14_01615 PF17386 Lacto-N-biose phosphorylase C-terminal domain JDW14_01615 PF09508 Lacto-N-biose phosphorylase N-terminal TIM barrel domain JDW14_01630 PF01380 SIS domain JDW14_01635 PF01979 Amidohydrolase family JDW14_01640 PF01791 DeoC/LacD family aldolase JDW14_01645 PF00255 Glutathione peroxidase JDW14_01650 PF01709 Transcriptional regulator JDW14_01655 PF01476 LysM domain JDW14_01655 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JDW14_01660 PF01649 Ribosomal protein S20 JDW14_01665 PF02151 UvrB/uvrC motif JDW14_01665 PF00271 Helicase conserved C-terminal domain JDW14_01665 PF04851 Type III restriction enzyme, res subunit JDW14_01665 PF17757 UvrB interaction domain JDW14_01665 PF12344 Ultra-violet resistance protein B JDW14_01670 PF01757 Acyltransferase family JDW14_01675 PF00293 NUDIX domain JDW14_01680 PF09297 NADH pyrophosphatase zinc ribbon domain JDW14_01680 PF00293 NUDIX domain JDW14_01695 PF12697 Alpha/beta hydrolase family JDW14_01700 PF00312 Ribosomal protein S15 JDW14_01705 PF00013 KH domain JDW14_01705 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JDW14_01705 PF01138 3' exoribonuclease family, domain 1 JDW14_01705 PF00575 S1 RNA binding domain JDW14_01705 PF03725 3' exoribonuclease family, domain 2 JDW14_01710 PF00579 tRNA synthetases class I (W and Y) JDW14_01715 PF03960 ArsC family JDW14_01720 PF05389 Negative regulator of genetic competence (MecA) JDW14_01730 PF01432 Peptidase family M3 JDW14_01730 PF08439 Oligopeptidase F JDW14_01740 PF17770 Ribonuclease J C-terminal domain JDW14_01740 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JDW14_01740 PF00753 Metallo-beta-lactamase superfamily JDW14_01760 PF02390 Putative methyltransferase JDW14_01765 PF01636 Phosphotransferase enzyme family JDW14_01775 PF00392 Bacterial regulatory proteins, gntR family JDW14_01780 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JDW14_01780 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JDW14_01785 PF00596 Class II Aldolase and Adducin N-terminal domain JDW14_01790 PF11762 L-arabinose isomerase C-terminal domain JDW14_01790 PF02610 L-arabinose isomerase JDW14_01795 PF04616 Glycosyl hydrolases family 43 JDW14_01795 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain JDW14_01800 PF17389 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain JDW14_01800 PF17390 Bacterial alpha-L-rhamnosidase C-terminal domain JDW14_01800 PF05592 Bacterial alpha-L-rhamnosidase concanavalin-like domain JDW14_01800 PF08531 Alpha-L-rhamnosidase N-terminal domain JDW14_01805 PF00933 Glycosyl hydrolase family 3 N terminal domain JDW14_01825 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JDW14_01825 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 JDW14_01825 PF16355 Domain of unknown function (DUF4982) JDW14_01825 PF02837 Glycosyl hydrolases family 2, sugar binding domain JDW14_01825 PF00703 Glycosyl hydrolases family 2 JDW14_01830 PF05343 M42 glutamyl aminopeptidase JDW14_01835 PF03484 tRNA synthetase B5 domain JDW14_01835 PF03483 B3/4 domain JDW14_01835 PF03147 Ferredoxin-fold anticodon binding domain JDW14_01835 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JDW14_01835 PF01588 Putative tRNA binding domain JDW14_01845 PF01225 Mur ligase family, catalytic domain JDW14_01845 PF02875 Mur ligase family, glutamate ligase domain JDW14_01845 PF08245 Mur ligase middle domain JDW14_01850 PF03466 LysR substrate binding domain JDW14_01850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JDW14_01855 PF00291 Pyridoxal-phosphate dependent enzyme JDW14_01860 PF00465 Iron-containing alcohol dehydrogenase JDW14_01865 PF05193 Peptidase M16 inactive domain JDW14_01865 PF00675 Insulinase (Peptidase family M16) JDW14_01865 PF08367 Peptidase M16C associated JDW14_01870 PF01594 AI-2E family transporter JDW14_01875 PF09154 Domain of unknown function (DUF1939) JDW14_01875 PF00128 Alpha amylase, catalytic domain JDW14_01900 PF01037 Lrp/AsnC ligand binding domain JDW14_01905 PF00155 Aminotransferase class I and II JDW14_01910 PF08439 Oligopeptidase F JDW14_01910 PF01432 Peptidase family M3 JDW14_01925 PF00664 ABC transporter transmembrane region JDW14_01925 PF00005 ABC transporter JDW14_01935 PF00886 Ribosomal protein S16 JDW14_01940 PF05649 Peptidase family M13 JDW14_01940 PF01431 Peptidase family M13 JDW14_01945 PF00465 Iron-containing alcohol dehydrogenase JDW14_01950 PF01554 MatE JDW14_01955 PF07992 Pyridine nucleotide-disulphide oxidoreductase JDW14_01955 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JDW14_01960 PF04226 Transglycosylase associated protein JDW14_01965 PF02645 Uncharacterised protein, DegV family COG1307 JDW14_01975 PF06265 Protein of unknown function (DUF1027) JDW14_01980 PF13344 Haloacid dehalogenase-like hydrolase JDW14_01990 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JDW14_01990 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JDW14_01995 PF00270 DEAD/DEAH box helicase JDW14_01995 PF00271 Helicase conserved C-terminal domain JDW14_02000 PF00072 Response regulator receiver domain JDW14_02000 PF00486 Transcriptional regulatory protein, C terminal JDW14_02005 PF18719 ArlS sensor domain JDW14_02005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDW14_02005 PF00512 His Kinase A (phospho-acceptor) domain JDW14_02015 PF00356 Bacterial regulatory proteins, lacI family JDW14_02020 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_02025 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_02030 PF01547 Bacterial extracellular solute-binding protein JDW14_02035 PF08244 Glycosyl hydrolases family 32 C terminal JDW14_02035 PF00251 Glycosyl hydrolases family 32 N-terminal domain JDW14_02040 PF00480 ROK family JDW14_02045 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain JDW14_02045 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain JDW14_02050 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JDW14_02050 PF00128 Alpha amylase, catalytic domain JDW14_02050 PF02806 Alpha amylase, C-terminal all-beta domain JDW14_02055 PF00483 Nucleotidyl transferase JDW14_02060 PF00483 Nucleotidyl transferase JDW14_02065 PF08323 Starch synthase catalytic domain JDW14_02065 PF00534 Glycosyl transferases group 1 JDW14_02070 PF07722 Peptidase C26 JDW14_02075 PF06144 DNA polymerase III, delta subunit JDW14_02080 PF01113 Dihydrodipicolinate reductase, N-terminus JDW14_02080 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain JDW14_02085 PF03618 Kinase/pyrophosphorylase JDW14_02105 PF01165 Ribosomal protein S21 JDW14_02110 PF00676 Dehydrogenase E1 component JDW14_02115 PF02780 Transketolase, C-terminal domain JDW14_02115 PF02779 Transketolase, pyrimidine binding domain JDW14_02120 PF02817 e3 binding domain JDW14_02120 PF00364 Biotin-requiring enzyme JDW14_02120 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JDW14_02125 PF07992 Pyridine nucleotide-disulphide oxidoreductase JDW14_02125 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JDW14_02130 PF00265 Thymidine kinase JDW14_02135 PF00472 RF-1 domain JDW14_02135 PF03462 PCRF domain JDW14_02140 PF17827 PrmC N-terminal domain JDW14_02140 PF05175 Methyltransferase small domain JDW14_02145 PF01300 Telomere recombination JDW14_02145 PF03481 Putative GTP-binding controlling metal-binding JDW14_02150 PF00464 Serine hydroxymethyltransferase JDW14_02155 PF01797 Transposase IS200 like JDW14_02160 PF00005 ABC transporter JDW14_02170 PF07730 Histidine kinase JDW14_02170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDW14_02175 PF00196 Bacterial regulatory proteins, luxR family JDW14_02175 PF00072 Response regulator receiver domain JDW14_02180 PF02803 Thiolase, C-terminal domain JDW14_02180 PF00108 Thiolase, N-terminal domain JDW14_02200 PF17763 Glutaminase/Asparaginase C-terminal domain JDW14_02200 PF00710 Asparaginase, N-terminal JDW14_02205 PF13840 ACT domain JDW14_02205 PF00696 Amino acid kinase family JDW14_02210 PF03447 Homoserine dehydrogenase, NAD binding domain JDW14_02210 PF00742 Homoserine dehydrogenase JDW14_02210 PF01842 ACT domain JDW14_02215 PF00288 GHMP kinases N terminal domain JDW14_02215 PF08544 GHMP kinases C terminal JDW14_02225 PF05368 NmrA-like family JDW14_02230 PF02082 Transcriptional regulator JDW14_02235 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JDW14_02235 PF02403 Seryl-tRNA synthetase N-terminal domain JDW14_02250 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_02255 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_02265 PF02308 MgtC family JDW14_02280 PF01409 tRNA synthetases class II core domain (F) JDW14_02280 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JDW14_02285 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JDW14_02285 PF03147 Ferredoxin-fold anticodon binding domain JDW14_02285 PF01588 Putative tRNA binding domain JDW14_02285 PF03484 tRNA synthetase B5 domain JDW14_02285 PF03483 B3/4 domain JDW14_02300 PF00291 Pyridoxal-phosphate dependent enzyme JDW14_02300 PF13291 ACT domain JDW14_02310 PF02673 Bacitracin resistance protein BacA JDW14_02315 PF02378 Phosphotransferase system, EIIC JDW14_02315 PF00367 phosphotransferase system, EIIB JDW14_02315 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JDW14_02325 PF08903 Domain of unknown function (DUF1846) JDW14_02330 PF08264 Anticodon-binding domain of tRNA JDW14_02330 PF10458 Valyl tRNA synthetase tRNA binding arm JDW14_02330 PF00133 tRNA synthetases class I (I, L, M and V) JDW14_02340 PF01032 FecCD transport family JDW14_02345 PF01032 FecCD transport family JDW14_02350 PF00005 ABC transporter JDW14_02355 PF01497 Periplasmic binding protein JDW14_02360 PF01136 Peptidase family U32 JDW14_02365 PF01136 Peptidase family U32 JDW14_02365 PF16325 Peptidase family U32 C-terminal domain JDW14_02375 PF11858 Domain of unknown function (DUF3378) JDW14_02375 PF01351 Ribonuclease HII JDW14_02390 PF00488 MutS domain V JDW14_02390 PF01713 Smr domain JDW14_02395 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JDW14_02395 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JDW14_02400 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JDW14_02400 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JDW14_02405 PF00860 Permease family JDW14_02410 PF00300 Histidine phosphatase superfamily (branch 1) JDW14_02415 PF03631 Virulence factor BrkB JDW14_02420 PF01098 Cell cycle protein JDW14_02425 PF01597 Glycine cleavage H-protein JDW14_02435 PF00664 ABC transporter transmembrane region JDW14_02435 PF00005 ABC transporter JDW14_02440 PF00005 ABC transporter JDW14_02440 PF00664 ABC transporter transmembrane region JDW14_02455 PF01476 LysM domain JDW14_02455 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JDW14_02485 PF00133 tRNA synthetases class I (I, L, M and V) JDW14_02485 PF09334 tRNA synthetases class I (M) JDW14_02485 PF08264 Anticodon-binding domain of tRNA JDW14_02485 PF13603 Leucyl-tRNA synthetase, Domain 2 JDW14_02490 PF01943 Polysaccharide biosynthesis protein JDW14_02490 PF14667 Polysaccharide biosynthesis C-terminal domain JDW14_02495 PF01479 S4 domain JDW14_02495 PF00849 RNA pseudouridylate synthase JDW14_02500 PF01546 Peptidase family M20/M25/M40 JDW14_02505 PF08032 RNA 2'-O ribose methyltransferase substrate binding JDW14_02505 PF00588 SpoU rRNA Methylase family JDW14_02525 PF00356 Bacterial regulatory proteins, lacI family JDW14_02530 PF10531 SLBB domain JDW14_02535 PF00753 Metallo-beta-lactamase superfamily JDW14_02535 PF13567 Domain of unknown function (DUF4131) JDW14_02535 PF03772 Competence protein JDW14_02540 PF06160 Septation ring formation regulator, EzrA JDW14_02545 PF00266 Aminotransferase class-V JDW14_02550 PF02568 Thiamine biosynthesis protein (ThiI) JDW14_02550 PF02926 THUMP domain JDW14_02555 PF02146 Sir2 family JDW14_02560 PF03372 Endonuclease/Exonuclease/phosphatase family JDW14_02565 PF00128 Alpha amylase, catalytic domain JDW14_02565 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JDW14_02565 PF17999 Pullulanase N1-terminal domain JDW14_02575 PF04011 LemA family JDW14_02590 PF07478 D-ala D-ala ligase C-terminus JDW14_02590 PF01820 D-ala D-ala ligase N-terminus JDW14_02595 PF08245 Mur ligase middle domain JDW14_02595 PF02875 Mur ligase family, glutamate ligase domain JDW14_02595 PF01225 Mur ligase family, catalytic domain JDW14_02600 PF00005 ABC transporter JDW14_02610 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_02615 PF03485 Arginyl tRNA synthetase N terminal domain JDW14_02615 PF05746 DALR anticodon binding domain JDW14_02615 PF00750 tRNA synthetases class I (R) JDW14_02620 PF09383 NIL domain JDW14_02620 PF00005 ABC transporter JDW14_02625 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_02630 PF03180 NLPA lipoprotein JDW14_02640 PF14436 Bacterial EndoU nuclease JDW14_02640 PF04740 LXG domain of WXG superfamily JDW14_02650 PF05175 Methyltransferase small domain JDW14_02675 PF00535 Glycosyl transferase family 2 JDW14_02690 PF00753 Metallo-beta-lactamase superfamily JDW14_02695 PF13180 PDZ domain JDW14_02700 PF17755 UvrA DNA-binding domain JDW14_02700 PF17760 UvrA interaction domain JDW14_02700 PF00005 ABC transporter JDW14_02715 PF04024 PspC domain JDW14_02720 PF02603 HPr Serine kinase N terminus JDW14_02720 PF07475 HPr Serine kinase C-terminal domain JDW14_02725 PF01790 Prolipoprotein diacylglyceryl transferase JDW14_02730 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JDW14_02730 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JDW14_02735 PF07992 Pyridine nucleotide-disulphide oxidoreductase JDW14_02740 PF09334 tRNA synthetases class I (M) JDW14_02740 PF01588 Putative tRNA binding domain JDW14_02740 PF08264 Anticodon-binding domain of tRNA JDW14_02745 PF01026 TatD related DNase JDW14_02750 PF13331 Domain of unknown function (DUF4093) JDW14_02750 PF01751 Toprim domain JDW14_02755 PF00398 Ribosomal RNA adenine dimethylase JDW14_02760 PF00005 ABC transporter JDW14_02785 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase JDW14_02800 PF02585 GlcNAc-PI de-N-acetylase JDW14_02805 PF03737 Aldolase/RraA JDW14_02820 PF08218 Citrate lyase ligase C-terminal domain JDW14_02825 PF06857 Malonate decarboxylase delta subunit (MdcD) JDW14_02830 PF03328 HpcH/HpaI aldolase/citrate lyase family JDW14_02835 PF04223 Citrate lyase, alpha subunit (CitF) JDW14_02840 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase JDW14_02845 PF03390 2-hydroxycarboxylate transporter family JDW14_02850 PF02436 Conserved carboxylase domain JDW14_02850 PF00682 HMGL-like JDW14_02850 PF00364 Biotin-requiring enzyme JDW14_02860 PF00364 Biotin-requiring enzyme JDW14_02865 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit JDW14_02870 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JDW14_02880 PF00557 Metallopeptidase family M24 JDW14_02885 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JDW14_02890 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JDW14_02895 PF00293 NUDIX domain JDW14_02905 PF01048 Phosphorylase superfamily JDW14_02910 PF00343 Carbohydrate phosphorylase JDW14_02915 PF02446 4-alpha-glucanotransferase JDW14_02920 PF00356 Bacterial regulatory proteins, lacI family JDW14_02920 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JDW14_02925 PF00119 ATP synthase A chain JDW14_02930 PF00137 ATP synthase subunit C JDW14_02935 PF00430 ATP synthase B/B' CF(0) JDW14_02945 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JDW14_02945 PF00306 ATP synthase alpha/beta chain, C terminal domain JDW14_02945 PF02874 ATP synthase alpha/beta family, beta-barrel domain JDW14_02950 PF00231 ATP synthase JDW14_02955 PF02874 ATP synthase alpha/beta family, beta-barrel domain JDW14_02955 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JDW14_02960 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain JDW14_02960 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JDW14_03060 PF02899 Phage integrase, N-terminal SAM-like domain JDW14_03060 PF00589 Phage integrase family JDW14_03130 PF13538 UvrD-like helicase C-terminal domain JDW14_03170 PF00145 C-5 cytosine-specific DNA methylase JDW14_03175 PF00145 C-5 cytosine-specific DNA methylase JDW14_03210 PF10668 Phage terminase small subunit JDW14_03210 PF03592 Terminase small subunit JDW14_03215 PF04466 Phage terminase large subunit JDW14_03215 PF17288 Terminase RNAseH like domain JDW14_03355 PF13457 GW (Gly-Tryp) dipeptide domain JDW14_03355 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JDW14_03380 PF11922 Domain of unknown function (DUF3440) JDW14_03380 PF01507 Phosphoadenosine phosphosulfate reductase family JDW14_03385 PF02195 ParB-like nuclease domain JDW14_03410 PF05979 Bacterial protein of unknown function (DUF896) JDW14_03415 PF03672 Uncharacterised protein family (UPF0154) JDW14_03420 PF00291 Pyridoxal-phosphate dependent enzyme JDW14_03425 PF00132 Bacterial transferase hexapeptide (six repeats) JDW14_03440 PF01230 HIT domain JDW14_03455 PF00271 Helicase conserved C-terminal domain JDW14_03455 PF00270 DEAD/DEAH box helicase JDW14_03460 PF02163 Peptidase family M50 JDW14_03460 PF17820 PDZ domain JDW14_03465 PF14579 Helix-hairpin-helix motif JDW14_03465 PF00929 Exonuclease JDW14_03465 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JDW14_03465 PF07733 Bacterial DNA polymerase III alpha NTPase domain JDW14_03465 PF11490 DNA polymerase III polC-type N-terminus II JDW14_03465 PF02811 PHP domain JDW14_03465 PF14480 DNA polymerase III polC-type N-terminus I JDW14_03470 PF06335 Protein of unknown function (DUF1054) JDW14_03475 PF05256 Uncharacterised protein family (UPF0223) JDW14_03480 PF00459 Inositol monophosphatase family JDW14_03485 PF00679 Elongation factor G C-terminus JDW14_03485 PF00009 Elongation factor Tu GTP binding domain JDW14_03485 PF03144 Elongation factor Tu domain 2 JDW14_03485 PF14492 Elongation Factor G, domain II JDW14_03495 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JDW14_03520 PF02381 MraZ protein, putative antitoxin-like JDW14_03525 PF01795 MraW methylase family JDW14_03535 PF03793 PASTA domain JDW14_03535 PF03717 Penicillin-binding Protein dimerisation domain JDW14_03535 PF00905 Penicillin binding protein transpeptidase domain JDW14_03540 PF01225 Mur ligase family, catalytic domain JDW14_03540 PF02875 Mur ligase family, glutamate ligase domain JDW14_03540 PF08245 Mur ligase middle domain JDW14_03545 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 JDW14_03545 PF00953 Glycosyl transferase family 4 JDW14_03550 PF08245 Mur ligase middle domain JDW14_03550 PF02875 Mur ligase family, glutamate ligase domain JDW14_03560 PF11983 Membrane-attachment and polymerisation-promoting switch JDW14_03560 PF02491 SHS2 domain inserted in FTSA JDW14_03565 PF00091 Tubulin/FtsZ family, GTPase domain JDW14_03565 PF12327 FtsZ family, C-terminal domain JDW14_03570 PF00005 ABC transporter JDW14_03570 PF08402 TOBE domain JDW14_03575 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_03580 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_03585 PF13416 Bacterial extracellular solute-binding protein JDW14_03595 PF01098 Cell cycle protein JDW14_03600 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) JDW14_03610 PF01467 Cytidylyltransferase-like JDW14_03615 PF00313 'Cold-shock' DNA-binding domain JDW14_03620 PF04816 tRNA (adenine(22)-N(1))-methyltransferase JDW14_03625 PF01784 NIF3 (NGG1p interacting factor 3) JDW14_03630 PF07687 Peptidase dimerisation domain JDW14_03630 PF01546 Peptidase family M20/M25/M40 JDW14_03640 PF02608 ABC transporter substrate-binding protein PnrA-like JDW14_03645 PF00005 ABC transporter JDW14_03650 PF02653 Branched-chain amino acid transport system / permease component JDW14_03655 PF02653 Branched-chain amino acid transport system / permease component JDW14_03680 PF00486 Transcriptional regulatory protein, C terminal JDW14_03680 PF00072 Response regulator receiver domain JDW14_03685 PF00672 HAMP domain JDW14_03685 PF00512 His Kinase A (phospho-acceptor) domain JDW14_03685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDW14_03690 PF04650 YSIRK type signal peptide JDW14_03690 PF00746 LPXTG cell wall anchor motif JDW14_03690 PF06458 MucBP domain JDW14_03695 PF04650 YSIRK type signal peptide JDW14_03695 PF06458 MucBP domain JDW14_03695 PF00746 LPXTG cell wall anchor motif JDW14_03700 PF01797 Transposase IS200 like JDW14_03705 PF01554 MatE JDW14_03730 PF01906 Putative heavy-metal-binding JDW14_03740 PF01042 Endoribonuclease L-PSP JDW14_03775 PF13464 Domain of unknown function (DUF4115) JDW14_03780 PF01066 CDP-alcohol phosphatidyltransferase JDW14_03785 PF10431 C-terminal, D2-small domain, of ClpB protein JDW14_03785 PF02861 Clp amino terminal domain, pathogenicity island component JDW14_03785 PF17871 AAA lid domain JDW14_03785 PF07724 AAA domain (Cdc48 subfamily) JDW14_03785 PF00004 ATPase family associated with various cellular activities (AAA) JDW14_03790 PF06962 Putative rRNA methylase JDW14_03795 PF01476 LysM domain JDW14_03795 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JDW14_03800 PF01783 Ribosomal L32p protein family JDW14_03810 PF03167 Uracil DNA glycosylase superfamily JDW14_03825 PF06177 QueT transporter JDW14_03840 PF04085 rod shape-determining protein MreC JDW14_03850 PF01475 Ferric uptake regulator family JDW14_03860 PF01479 S4 domain JDW14_03860 PF17774 Putative RNA-binding domain in YlmH JDW14_03865 PF05103 DivIVA protein JDW14_03870 PF08264 Anticodon-binding domain of tRNA JDW14_03870 PF00133 tRNA synthetases class I (I, L, M and V) JDW14_03870 PF06827 Zinc finger found in FPG and IleRS JDW14_03880 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JDW14_03885 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JDW14_03895 PF13520 Amino acid permease JDW14_03900 PF01177 Asp/Glu/Hydantoin racemase JDW14_03905 PF01725 Ham1 family JDW14_03910 PF12850 Calcineurin-like phosphoesterase superfamily domain JDW14_03935 PF07992 Pyridine nucleotide-disulphide oxidoreductase JDW14_03940 PF00348 Polyprenyl synthetase JDW14_03945 PF04205 FMN-binding domain JDW14_03960 PF02424 ApbE family JDW14_03980 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JDW14_03980 PF14579 Helix-hairpin-helix motif JDW14_03980 PF07733 Bacterial DNA polymerase III alpha NTPase domain JDW14_03980 PF02811 PHP domain JDW14_03980 PF01336 OB-fold nucleic acid binding domain JDW14_03985 PF00365 Phosphofructokinase JDW14_03990 PF00391 PEP-utilising enzyme, mobile domain JDW14_03990 PF00224 Pyruvate kinase, barrel domain JDW14_03990 PF02887 Pyruvate kinase, alpha/beta domain JDW14_03995 PF00571 CBS domain JDW14_03995 PF03448 MgtE intracellular N domain JDW14_03995 PF01769 Divalent cation transporter JDW14_04015 PF03412 Peptidase C39 family JDW14_04015 PF00664 ABC transporter transmembrane region JDW14_04015 PF00005 ABC transporter JDW14_04025 PF00679 Elongation factor G C-terminus JDW14_04025 PF00009 Elongation factor Tu GTP binding domain JDW14_04025 PF03144 Elongation factor Tu domain 2 JDW14_04025 PF06421 GTP-binding protein LepA C-terminus JDW14_04030 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JDW14_04035 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JDW14_04035 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JDW14_04040 PF00871 Acetokinase family JDW14_04045 PF00296 Luciferase-like monooxygenase JDW14_04065 PF08274 PhnA Zinc-Ribbon JDW14_04065 PF03831 PhnA domain JDW14_04070 PF12822 ECF transporter, substrate-specific component JDW14_04085 PF01757 Acyltransferase family JDW14_04100 PF00005 ABC transporter JDW14_04100 PF09383 NIL domain JDW14_04110 PF01226 Formate/nitrite transporter JDW14_04115 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JDW14_04120 PF00085 Thioredoxin JDW14_04135 PF12127 SigmaW regulon antibacterial JDW14_04145 PF02690 Na+/Pi-cotransporter JDW14_04150 PF01569 PAP2 superfamily JDW14_04160 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_04165 PF00005 ABC transporter JDW14_04180 PF00318 Ribosomal protein S2 JDW14_04185 PF00889 Elongation factor TS JDW14_04190 PF00696 Amino acid kinase family JDW14_04195 PF03167 Uracil DNA glycosylase superfamily JDW14_04205 PF12002 MgsA AAA+ ATPase C terminal JDW14_04205 PF16193 AAA C-terminal domain JDW14_04205 PF05496 Holliday junction DNA helicase RuvB P-loop domain JDW14_04210 PF00266 Aminotransferase class-V JDW14_04230 PF00392 Bacterial regulatory proteins, gntR family JDW14_04230 PF00155 Aminotransferase class I and II JDW14_04245 PF00291 Pyridoxal-phosphate dependent enzyme JDW14_04245 PF14821 Threonine synthase N terminus JDW14_04250 PF02868 Thermolysin metallopeptidase, alpha-helical domain JDW14_04250 PF03413 Peptidase propeptide and YPEB domain JDW14_04250 PF07504 Fungalysin/Thermolysin Propeptide Motif JDW14_04250 PF01447 Thermolysin metallopeptidase, catalytic domain JDW14_04260 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JDW14_04260 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JDW14_04265 PF02096 60Kd inner membrane protein JDW14_04270 PF00899 ThiF family JDW14_04275 PF01026 TatD related DNase JDW14_04280 PF00708 Acylphosphatase JDW14_04285 PF01580 FtsK/SpoIIIE family JDW14_04285 PF17854 FtsK alpha domain JDW14_04285 PF09397 Ftsk gamma domain JDW14_04290 PF02224 Cytidylate kinase JDW14_04295 PF00575 S1 RNA binding domain JDW14_04300 PF01926 50S ribosome-binding GTPase JDW14_04300 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JDW14_04305 PF00216 Bacterial DNA-binding protein JDW14_04325 PF03717 Penicillin-binding Protein dimerisation domain JDW14_04325 PF00905 Penicillin binding protein transpeptidase domain JDW14_04330 PF00128 Alpha amylase, catalytic domain JDW14_04330 PF11896 Domain of unknown function (DUF3416) JDW14_04345 PF01351 Ribonuclease HII JDW14_04350 PF02481 DNA recombination-mediator protein A JDW14_04350 PF17782 DprA winged helix domain JDW14_04355 PF01131 DNA topoisomerase JDW14_04355 PF01751 Toprim domain JDW14_04355 PF01396 Topoisomerase DNA binding C4 zinc finger JDW14_04360 PF12833 Helix-turn-helix domain JDW14_04360 PF01965 DJ-1/PfpI family JDW14_04365 PF02785 Biotin carboxylase C-terminal domain JDW14_04365 PF02436 Conserved carboxylase domain JDW14_04365 PF00364 Biotin-requiring enzyme JDW14_04365 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JDW14_04365 PF00682 HMGL-like JDW14_04365 PF00289 Biotin carboxylase, N-terminal domain JDW14_04370 PF09587 Bacterial capsule synthesis protein PGA_cap JDW14_04375 PF01380 SIS domain JDW14_04380 PF02774 Semialdehyde dehydrogenase, dimerisation domain JDW14_04380 PF01118 Semialdehyde dehydrogenase, NAD binding domain JDW14_04390 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JDW14_04390 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JDW14_04395 PF00701 Dihydrodipicolinate synthetase family JDW14_04400 PF01113 Dihydrodipicolinate reductase, N-terminus JDW14_04400 PF05173 Dihydrodipicolinate reductase, C-terminus JDW14_04405 PF00535 Glycosyl transferase family 2 JDW14_04425 PF13091 PLD-like domain JDW14_04440 PF00905 Penicillin binding protein transpeptidase domain JDW14_04440 PF00912 Transglycosylase JDW14_04445 PF06133 Control of competence regulator ComK, YlbF/YmcA JDW14_04455 PF13514 AAA domain JDW14_04460 PF01966 HD domain JDW14_04475 PF00005 ABC transporter JDW14_04490 PF12833 Helix-turn-helix domain JDW14_04490 PF17853 GGDEF-like domain JDW14_04495 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JDW14_04495 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JDW14_04500 PF06134 L-rhamnose isomerase (RhaA) JDW14_04505 PF00596 Class II Aldolase and Adducin N-terminal domain JDW14_04510 PF01255 Putative undecaprenyl diphosphate synthase JDW14_04520 PF13407 Periplasmic binding protein domain JDW14_04525 PF00005 ABC transporter JDW14_04530 PF02653 Branched-chain amino acid transport system / permease component JDW14_04540 PF01883 Iron-sulfur cluster assembly protein JDW14_04545 PF01553 Acyltransferase JDW14_04555 PF01702 Queuine tRNA-ribosyltransferase JDW14_04560 PF02699 Preprotein translocase subunit JDW14_04575 PF02576 RimP N-terminal domain JDW14_04575 PF17384 RimP C-terminal SH3 domain JDW14_04580 PF13184 NusA-like KH domain JDW14_04580 PF08529 NusA N-terminal domain JDW14_04580 PF00575 S1 RNA binding domain JDW14_04585 PF04296 Protein of unknown function (DUF448) JDW14_04590 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family JDW14_04595 PF00009 Elongation factor Tu GTP binding domain JDW14_04595 PF11987 Translation-initiation factor 2 JDW14_04595 PF04760 Translation initiation factor IF-2, N-terminal region JDW14_04600 PF02033 Ribosome-binding factor A JDW14_04615 PF04932 O-Antigen ligase JDW14_04625 PF00535 Glycosyl transferase family 2 JDW14_04630 PF01411 tRNA synthetases class II (A) JDW14_04630 PF02272 DHHA1 domain JDW14_04630 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JDW14_04635 PF06135 IreB regulatory phosphoprotein JDW14_04640 PF03652 Holliday junction resolvase JDW14_04645 PF06949 Protein of unknown function (DUF1292) JDW14_04650 PF02618 YceG-like family JDW14_04655 PF00485 Phosphoribulokinase / Uridine kinase family JDW14_04660 PF01272 Transcription elongation factor, GreA/GreB, C-term JDW14_04660 PF03449 Transcription elongation factor, N-terminal JDW14_04670 PF07730 Histidine kinase JDW14_04670 PF00672 HAMP domain JDW14_04670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDW14_04675 PF00196 Bacterial regulatory proteins, luxR family JDW14_04675 PF00072 Response regulator receiver domain JDW14_04680 PF01521 Iron-sulphur cluster biosynthesis JDW14_04695 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain JDW14_04695 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JDW14_04700 PF00486 Transcriptional regulatory protein, C terminal JDW14_04700 PF00072 Response regulator receiver domain JDW14_04705 PF00512 His Kinase A (phospho-acceptor) domain JDW14_04705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDW14_04705 PF18719 ArlS sensor domain JDW14_04715 PF14490 Helix-hairpin-helix containing domain JDW14_04715 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain JDW14_04715 PF13538 UvrD-like helicase C-terminal domain JDW14_04720 PF08240 Alcohol dehydrogenase GroES-like domain JDW14_04720 PF00107 Zinc-binding dehydrogenase JDW14_04725 PF00781 Diacylglycerol kinase catalytic domain JDW14_04735 PF06470 SMC proteins Flexible Hinge Domain JDW14_04735 PF02463 RecF/RecN/SMC N terminal domain JDW14_04740 PF01938 TRAM domain JDW14_04740 PF05958 tRNA (Uracil-5-)-methyltransferase JDW14_04755 PF01812 5-formyltetrahydrofolate cyclo-ligase family JDW14_04765 PF00480 ROK family JDW14_04770 PF00581 Rhodanese-like domain JDW14_04780 PF00156 Phosphoribosyl transferase domain JDW14_04785 PF05670 NFACT protein RNA binding domain JDW14_04795 PF05239 PRC-barrel domain JDW14_04795 PF01782 RimM N-terminal domain JDW14_04800 PF01746 tRNA (Guanine-1)-methyltransferase JDW14_04805 PF01368 DHH family JDW14_04805 PF02833 DHHA2 domain JDW14_04820 PF04055 Radical SAM superfamily JDW14_04825 PF00583 Acetyltransferase (GNAT) family JDW14_04830 PF08439 Oligopeptidase F JDW14_04830 PF01432 Peptidase family M3 JDW14_04835 PF00580 UvrD/REP helicase N-terminal domain JDW14_04835 PF12705 PD-(D/E)XK nuclease superfamily JDW14_04835 PF13361 UvrD-like helicase C-terminal domain JDW14_04840 PF12705 PD-(D/E)XK nuclease superfamily JDW14_04845 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JDW14_04845 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JDW14_04850 PF00294 pfkB family carbohydrate kinase JDW14_04855 PF08220 DeoR-like helix-turn-helix domain JDW14_04855 PF00455 DeoR C terminal sensor domain JDW14_04860 PF01717 Cobalamin-independent synthase, Catalytic domain JDW14_04865 PF01717 Cobalamin-independent synthase, Catalytic domain JDW14_04875 PF00005 ABC transporter JDW14_04875 PF00664 ABC transporter transmembrane region JDW14_04880 PF00664 ABC transporter transmembrane region JDW14_04880 PF00005 ABC transporter JDW14_04885 PF00035 Double-stranded RNA binding motif JDW14_04885 PF14622 Ribonuclease-III-like JDW14_04890 PF01546 Peptidase family M20/M25/M40 JDW14_04890 PF07687 Peptidase dimerisation domain JDW14_04895 PF00497 Bacterial extracellular solute-binding proteins, family 3 JDW14_04900 PF00005 ABC transporter JDW14_04905 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_04925 PF02565 Recombination protein O C terminal JDW14_04925 PF11967 Recombination protein O N terminal JDW14_04930 PF01926 50S ribosome-binding GTPase JDW14_04930 PF07650 KH domain JDW14_04935 PF01219 Prokaryotic diacylglycerol kinase JDW14_04940 PF02130 Uncharacterized protein family UPF0054 JDW14_04945 PF07697 7TM-HD extracellular JDW14_04945 PF01966 HD domain JDW14_04945 PF07698 7TM receptor with intracellular HD hydrolase JDW14_04950 PF02562 PhoH-like protein JDW14_04955 PF09424 Yqey-like protein JDW14_04960 PF01263 Aldose 1-epimerase JDW14_04965 PF00004 ATPase family associated with various cellular activities (AAA) JDW14_04965 PF07724 AAA domain (Cdc48 subfamily) JDW14_04965 PF10431 C-terminal, D2-small domain, of ClpB protein JDW14_04970 PF00227 Proteasome subunit JDW14_04975 PF02899 Phage integrase, N-terminal SAM-like domain JDW14_04975 PF00589 Phage integrase family JDW14_04985 PF00232 Glycosyl hydrolase family 1 JDW14_05000 PF01915 Glycosyl hydrolase family 3 C-terminal domain JDW14_05000 PF00933 Glycosyl hydrolase family 3 N terminal domain JDW14_05000 PF14310 Fibronectin type III-like domain JDW14_05010 PF12833 Helix-turn-helix domain JDW14_05010 PF02311 AraC-like ligand binding domain JDW14_05015 PF00013 KH domain JDW14_05015 PF12072 Domain of unknown function (DUF3552) JDW14_05015 PF01966 HD domain JDW14_05020 PF00535 Glycosyl transferase family 2 JDW14_05040 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JDW14_05040 PF01476 LysM domain JDW14_05200 PF18755 Restriction Enzyme Adenine Methylase Associated JDW14_05200 PF01555 DNA methylase JDW14_05225 PF00462 Glutaredoxin JDW14_05240 PF00436 Single-strand binding protein family JDW14_05250 PF14297 Domain of unknown function (DUF4373) JDW14_05250 PF07261 Replication initiation and membrane attachment JDW14_05255 PF03837 RecT family JDW14_05260 PF09588 YqaJ-like viral recombinase domain JDW14_05310 PF00589 Phage integrase family JDW14_05310 PF14659 Phage integrase, N-terminal SAM-like domain JDW14_05315 PF01245 Ribosomal protein L19 JDW14_05320 PF04101 Glycosyltransferase family 28 C-terminal domain JDW14_05320 PF03033 Glycosyltransferase family 28 N-terminal domain JDW14_05325 PF02547 Queuosine biosynthesis protein JDW14_05330 PF05496 Holliday junction DNA helicase RuvB P-loop domain JDW14_05330 PF17864 RuvB AAA lid domain JDW14_05330 PF05491 RuvB C-terminal winged helix domain JDW14_05335 PF07499 RuvA, C-terminal domain JDW14_05335 PF01330 RuvA N terminal domain JDW14_05340 PF01641 SelR domain JDW14_05345 PF08676 MutL C terminal dimerisation domain JDW14_05345 PF01119 DNA mismatch repair protein, C-terminal domain JDW14_05350 PF05190 MutS family domain IV JDW14_05350 PF05188 MutS domain II JDW14_05350 PF05192 MutS domain III JDW14_05350 PF01624 MutS domain I JDW14_05350 PF00488 MutS domain V JDW14_05355 PF13277 YmdB-like protein JDW14_05360 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JDW14_05360 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JDW14_05365 PF00633 Helix-hairpin-helix motif JDW14_05365 PF00730 HhH-GPD superfamily base excision DNA repair protein JDW14_05365 PF10576 Iron-sulfur binding domain of endonuclease III JDW14_05380 PF01479 S4 domain JDW14_05380 PF00849 RNA pseudouridylate synthase JDW14_05385 PF01252 Signal peptidase (SPase) II JDW14_05400 PF02881 SRP54-type protein, helical bundle domain JDW14_05400 PF00448 SRP54-type protein, GTPase domain JDW14_05415 PF01016 Ribosomal L27 protein JDW14_05425 PF00829 Ribosomal prokaryotic L21 protein JDW14_05430 PF01238 Phosphomannose isomerase type I JDW14_05445 PF00664 ABC transporter transmembrane region JDW14_05445 PF00005 ABC transporter JDW14_05450 PF00664 ABC transporter transmembrane region JDW14_05450 PF00005 ABC transporter JDW14_05460 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JDW14_05460 PF00703 Glycosyl hydrolases family 2 JDW14_05460 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 JDW14_05460 PF16355 Domain of unknown function (DUF4982) JDW14_05460 PF02837 Glycosyl hydrolases family 2, sugar binding domain JDW14_05465 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JDW14_05470 PF01039 Carboxyl transferase domain JDW14_05475 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JDW14_05475 PF00289 Biotin carboxylase, N-terminal domain JDW14_05475 PF02785 Biotin carboxylase C-terminal domain JDW14_05480 PF07977 FabA-like domain JDW14_05485 PF00364 Biotin-requiring enzyme JDW14_05490 PF00109 Beta-ketoacyl synthase, N-terminal domain JDW14_05490 PF02801 Beta-ketoacyl synthase, C-terminal domain JDW14_05505 PF03060 Nitronate monooxygenase JDW14_05510 PF00550 Phosphopantetheine attachment site JDW14_05515 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JDW14_05515 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JDW14_05525 PF01479 S4 domain JDW14_05525 PF00849 RNA pseudouridylate synthase JDW14_05530 PF04079 Segregation and condensation complex subunit ScpB JDW14_05535 PF02616 Segregation and condensation protein ScpA JDW14_05545 PF01048 Phosphorylase superfamily JDW14_05550 PF01676 Metalloenzyme superfamily JDW14_05555 PF02899 Phage integrase, N-terminal SAM-like domain JDW14_05555 PF00589 Phage integrase family JDW14_05560 PF17783 CvfB-like winged helix domain JDW14_05560 PF13509 S1 domain JDW14_05565 PF09382 RQC domain JDW14_05565 PF00271 Helicase conserved C-terminal domain JDW14_05565 PF00570 HRDC domain JDW14_05565 PF00270 DEAD/DEAH box helicase JDW14_05565 PF16124 RecQ zinc-binding JDW14_05570 PF00753 Metallo-beta-lactamase superfamily JDW14_05570 PF16123 Hydroxyacylglutathione hydrolase C-terminus JDW14_05575 PF01554 MatE JDW14_05585 PF01541 GIY-YIG catalytic domain JDW14_05585 PF02151 UvrB/uvrC motif JDW14_05585 PF08459 UvrC Helix-hairpin-helix N-terminal JDW14_05595 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JDW14_05595 PF07992 Pyridine nucleotide-disulphide oxidoreductase JDW14_05605 PF00561 alpha/beta hydrolase fold JDW14_05610 PF02801 Beta-ketoacyl synthase, C-terminal domain JDW14_05610 PF00698 Acyl transferase domain JDW14_05610 PF08240 Alcohol dehydrogenase GroES-like domain JDW14_05610 PF00107 Zinc-binding dehydrogenase JDW14_05610 PF00109 Beta-ketoacyl synthase, N-terminal domain JDW14_05610 PF08659 KR domain JDW14_05610 PF16197 Ketoacyl-synthetase C-terminal extension JDW14_05610 PF14765 Polyketide synthase dehydratase JDW14_05610 PF00550 Phosphopantetheine attachment site JDW14_05635 PF06993 Protein of unknown function (DUF1304) JDW14_05640 PF01047 MarR family JDW14_05650 PF00072 Response regulator receiver domain JDW14_05650 PF00486 Transcriptional regulatory protein, C terminal JDW14_05665 PF00005 ABC transporter JDW14_05680 PF00005 ABC transporter JDW14_05690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDW14_05690 PF00512 His Kinase A (phospho-acceptor) domain JDW14_05695 PF00486 Transcriptional regulatory protein, C terminal JDW14_05695 PF00072 Response regulator receiver domain JDW14_05705 PF01336 OB-fold nucleic acid binding domain JDW14_05705 PF00152 tRNA synthetases class II (D, K and N) JDW14_05715 PF00929 Exonuclease JDW14_05715 PF13307 Helicase C-terminal domain JDW14_05720 PF01743 Poly A polymerase head domain JDW14_05720 PF13735 tRNA nucleotidyltransferase domain 2 putative JDW14_05720 PF12627 Probable RNA and SrmB- binding site of polymerase A JDW14_05745 PF06445 GyrI-like small molecule binding domain JDW14_05745 PF12833 Helix-turn-helix domain JDW14_05750 PF00561 alpha/beta hydrolase fold JDW14_05755 PF12697 Alpha/beta hydrolase family JDW14_05770 PF03979 Sigma-70 factor, region 1.1 JDW14_05770 PF04545 Sigma-70, region 4 JDW14_05770 PF04539 Sigma-70 region 3 JDW14_05770 PF04542 Sigma-70 region 2 JDW14_05770 PF00140 Sigma-70 factor, region 1.2 JDW14_05775 PF01807 CHC2 zinc finger JDW14_05775 PF08275 DNA primase catalytic core, N-terminal domain JDW14_05775 PF10410 DnaB-helicase binding domain of primase JDW14_05780 PF01926 50S ribosome-binding GTPase JDW14_05785 PF07724 AAA domain (Cdc48 subfamily) JDW14_05785 PF10431 C-terminal, D2-small domain, of ClpB protein JDW14_05785 PF06689 ClpX C4-type zinc finger JDW14_05790 PF05697 Bacterial trigger factor protein (TF) JDW14_05790 PF05698 Bacterial trigger factor protein (TF) C-terminus JDW14_05790 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JDW14_05795 PF03838 Recombination protein U JDW14_05800 PF00912 Transglycosylase JDW14_05800 PF00905 Penicillin binding protein transpeptidase domain JDW14_05810 PF13936 Helix-turn-helix domain JDW14_05815 PF10502 Signal peptidase, peptidase S26 JDW14_05820 PF17820 PDZ domain JDW14_05820 PF01471 Putative peptidoglycan binding domain JDW14_05820 PF03572 Peptidase family S41 JDW14_05825 PF01048 Phosphorylase superfamily JDW14_05840 PF00756 Putative esterase JDW14_05840 PF03629 Carbohydrate esterase, sialic acid-specific acetylesterase JDW14_05845 PF06855 YozE SAM-like fold JDW14_05850 PF00004 ATPase family associated with various cellular activities (AAA) JDW14_05850 PF17866 AAA lid domain JDW14_05855 PF01556 DnaJ C terminal domain JDW14_05855 PF00226 DnaJ domain JDW14_05855 PF00684 DnaJ central domain JDW14_05860 PF00012 Hsp70 protein JDW14_05865 PF01025 GrpE JDW14_05870 PF01628 HrcA protein C terminal domain JDW14_05870 PF08279 HTH domain JDW14_05875 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JDW14_05875 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JDW14_05880 PF04055 Radical SAM superfamily JDW14_05880 PF06969 HemN C-terminal domain JDW14_05885 PF01687 Riboflavin kinase JDW14_05885 PF06574 FAD synthetase JDW14_05890 PF01509 TruB family pseudouridylate synthase (N terminal domain) JDW14_05890 PF16198 tRNA pseudouridylate synthase B C-terminal domain JDW14_05895 PF03989 DNA gyrase C-terminal domain, beta-propeller JDW14_05895 PF00521 DNA gyrase/topoisomerase IV, subunit A JDW14_05900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDW14_05900 PF00986 DNA gyrase B subunit, carboxyl terminus JDW14_05900 PF00204 DNA gyrase B JDW14_05900 PF01751 Toprim domain JDW14_05910 PF02660 Glycerol-3-phosphate acyltransferase JDW14_05915 PF00210 Ferritin-like domain JDW14_05920 PF00471 Ribosomal protein L33 JDW14_05930 PF00005 ABC transporter JDW14_05935 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_05945 PF00746 LPXTG cell wall anchor motif JDW14_05945 PF06458 MucBP domain JDW14_05945 PF04650 YSIRK type signal peptide JDW14_05950 PF00005 ABC transporter JDW14_05960 PF00746 LPXTG cell wall anchor motif JDW14_05960 PF06458 MucBP domain JDW14_05960 PF04650 YSIRK type signal peptide JDW14_05965 PF00239 Resolvase, N terminal domain JDW14_05965 PF02796 Helix-turn-helix domain of resolvase JDW14_05970 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_05985 PF00890 FAD binding domain JDW14_05985 PF14537 Cytochrome c3 JDW14_05990 PF00890 FAD binding domain JDW14_05990 PF14537 Cytochrome c3 JDW14_05995 PF08240 Alcohol dehydrogenase GroES-like domain JDW14_05995 PF00107 Zinc-binding dehydrogenase JDW14_06005 PF00561 alpha/beta hydrolase fold JDW14_06015 PF00186 Dihydrofolate reductase JDW14_06025 PF08818 Domain of unknown function (DU1801) JDW14_06030 PF00303 Thymidylate synthase JDW14_06035 PF16326 ABC transporter C-terminal domain JDW14_06035 PF12848 ABC transporter JDW14_06035 PF00005 ABC transporter JDW14_06040 PF13193 AMP-binding enzyme C-terminal domain JDW14_06040 PF00501 AMP-binding enzyme JDW14_06045 PF02517 CPBP intramembrane metalloprotease JDW14_06055 PF00005 ABC transporter JDW14_06080 PF00171 Aldehyde dehydrogenase family JDW14_06080 PF00465 Iron-containing alcohol dehydrogenase JDW14_06125 PF07501 G5 domain JDW14_06125 PF07580 M26 IgA1-specific Metallo-endopeptidase C-terminal region JDW14_06125 PF05342 M26 IgA1-specific Metallo-endopeptidase N-terminal region JDW14_06125 PF04650 YSIRK type signal peptide JDW14_06130 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JDW14_06130 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JDW14_06135 PF01047 MarR family JDW14_06155 PF00781 Diacylglycerol kinase catalytic domain JDW14_06160 PF17773 UPF0176 acylphosphatase like domain JDW14_06160 PF12368 Rhodanase C-terminal JDW14_06160 PF00581 Rhodanese-like domain JDW14_06165 PF00905 Penicillin binding protein transpeptidase domain JDW14_06165 PF00912 Transglycosylase JDW14_06170 PF00155 Aminotransferase class I and II JDW14_06175 PF01053 Cys/Met metabolism PLP-dependent enzyme JDW14_06185 PF02683 Cytochrome C biogenesis protein transmembrane region JDW14_06195 PF08534 Redoxin JDW14_06200 PF01625 Peptide methionine sulfoxide reductase JDW14_06200 PF01641 SelR domain JDW14_06205 PF00072 Response regulator receiver domain JDW14_06205 PF04397 LytTr DNA-binding domain JDW14_06210 PF02743 Cache domain JDW14_06210 PF00672 HAMP domain JDW14_06210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDW14_06210 PF06580 Histidine kinase JDW14_06220 PF00135 Carboxylesterase family JDW14_06225 PF00232 Glycosyl hydrolase family 1 JDW14_06230 PF00300 Histidine phosphatase superfamily (branch 1) JDW14_06240 PF00232 Glycosyl hydrolase family 1 JDW14_06245 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JDW14_06245 PF02378 Phosphotransferase system, EIIC JDW14_06245 PF00367 phosphotransferase system, EIIB JDW14_06250 PF00874 PRD domain JDW14_06250 PF03123 CAT RNA binding domain JDW14_06255 PF01268 Formate--tetrahydrofolate ligase JDW14_06260 PF00206 Lyase JDW14_06260 PF10397 Adenylosuccinate lyase C-terminus JDW14_06265 PF01368 DHH family JDW14_06265 PF02272 DHHA1 domain JDW14_06275 PF07085 DRTGG domain JDW14_06275 PF00392 Bacterial regulatory proteins, gntR family JDW14_06275 PF00571 CBS domain JDW14_06275 PF03061 Thioesterase superfamily JDW14_06280 PF11798 IMS family HHH motif JDW14_06280 PF00817 impB/mucB/samB family JDW14_06280 PF11799 impB/mucB/samB family C-terminal domain JDW14_06285 PF04237 YjbR JDW14_06290 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JDW14_06290 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JDW14_06290 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JDW14_06295 PF03816 Cell envelope-related transcriptional attenuator domain JDW14_06305 PF16363 GDP-mannose 4,6 dehydratase JDW14_06310 PF00258 Flavodoxin JDW14_06315 PF02073 Thermophilic metalloprotease (M29) JDW14_06325 PF00534 Glycosyl transferases group 1 JDW14_06325 PF13439 Glycosyltransferase Family 4 JDW14_06330 PF00483 Nucleotidyl transferase JDW14_06335 PF02580 D-Tyr-tRNA(Tyr) deacylase JDW14_06340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JDW14_06345 PF00156 Phosphoribosyl transferase domain JDW14_06350 PF01368 DHH family JDW14_06350 PF10141 Single-strand DNA-specific exonuclease, C terminal domain JDW14_06350 PF17768 RecJ OB domain JDW14_06350 PF02272 DHHA1 domain JDW14_06360 PF00106 short chain dehydrogenase JDW14_06365 PF12706 Beta-lactamase superfamily domain JDW14_06365 PF00753 Metallo-beta-lactamase superfamily JDW14_06370 PF01757 Acyltransferase family JDW14_06375 PF01018 GTP1/OBG JDW14_06375 PF09269 Domain of unknown function (DUF1967) JDW14_06375 PF01926 50S ribosome-binding GTPase JDW14_06380 PF02092 Glycyl-tRNA synthetase beta subunit JDW14_06385 PF02091 Glycyl-tRNA synthetase alpha subunit JDW14_06400 PF01458 Uncharacterized protein family (UPF0051) JDW14_06405 PF01592 NifU-like N terminal domain JDW14_06410 PF00266 Aminotransferase class-V JDW14_06415 PF01458 Uncharacterized protein family (UPF0051) JDW14_06420 PF00005 ABC transporter JDW14_06430 PF00480 ROK family JDW14_06440 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JDW14_06440 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JDW14_06450 PF01261 Xylose isomerase-like TIM barrel JDW14_06455 PF01336 OB-fold nucleic acid binding domain JDW14_06455 PF00152 tRNA synthetases class II (D, K and N) JDW14_06455 PF02938 GAD domain JDW14_06460 PF13393 Histidyl-tRNA synthetase JDW14_06460 PF03129 Anticodon binding domain JDW14_06470 PF01297 Zinc-uptake complex component A periplasmic JDW14_06475 PF01520 N-acetylmuramoyl-L-alanine amidase JDW14_06475 PF08239 Bacterial SH3 domain JDW14_06480 PF01765 Ribosome recycling factor JDW14_06485 PF12704 MacB-like periplasmic core domain JDW14_06485 PF02687 FtsX-like permease family JDW14_06490 PF00005 ABC transporter JDW14_06505 PF01915 Glycosyl hydrolase family 3 C-terminal domain JDW14_06505 PF14310 Fibronectin type III-like domain JDW14_06505 PF00933 Glycosyl hydrolase family 3 N terminal domain JDW14_06510 PF00232 Glycosyl hydrolase family 1 JDW14_06515 PF12833 Helix-turn-helix domain JDW14_06520 PF00892 EamA-like transporter family JDW14_06530 PF04474 Protein of unknown function (DUF554) JDW14_06535 PF16657 Maltogenic Amylase, C-terminal domain JDW14_06535 PF00128 Alpha amylase, catalytic domain JDW14_06535 PF02903 Alpha amylase, N-terminal ig-like domain JDW14_06540 PF13291 ACT domain JDW14_06540 PF04607 Region found in RelA / SpoT proteins JDW14_06540 PF02824 TGS domain JDW14_06545 PF01791 DeoC/LacD family aldolase JDW14_06550 PF04452 RNA methyltransferase JDW14_06565 PF05103 DivIVA protein JDW14_06575 PF02926 THUMP domain JDW14_06575 PF01170 Putative RNA methylase family UPF0020 JDW14_06580 PF01797 Transposase IS200 like JDW14_06585 PF03746 LamB/YcsF family JDW14_06590 PF00289 Biotin carboxylase, N-terminal domain JDW14_06590 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JDW14_06590 PF02785 Biotin carboxylase C-terminal domain JDW14_06595 PF00364 Biotin-requiring enzyme JDW14_06600 PF02626 Carboxyltransferase domain, subdomain A and B JDW14_06605 PF02682 Carboxyltransferase domain, subdomain C and D JDW14_06610 PF01566 Natural resistance-associated macrophage protein JDW14_06615 PF02637 GatB domain JDW14_06615 PF02934 GatB/GatE catalytic domain JDW14_06620 PF01425 Amidase JDW14_06625 PF02686 Glu-tRNAGln amidotransferase C subunit JDW14_06630 PF07537 CamS sex pheromone cAM373 precursor JDW14_06635 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JDW14_06635 PF03120 NAD-dependent DNA ligase OB-fold domain JDW14_06635 PF01653 NAD-dependent DNA ligase adenylation domain JDW14_06635 PF00533 BRCA1 C Terminus (BRCT) domain JDW14_06635 PF12826 Helix-hairpin-helix motif JDW14_06640 PF00580 UvrD/REP helicase N-terminal domain JDW14_06640 PF13361 UvrD-like helicase C-terminal domain JDW14_06650 PF08241 Methyltransferase domain JDW14_06665 PF01554 MatE JDW14_06670 PF05872 Bacterial protein of unknown function (DUF853) JDW14_06675 PF01554 MatE JDW14_06685 PF01168 Alanine racemase, N-terminal domain JDW14_06705 PF00356 Bacterial regulatory proteins, lacI family JDW14_06710 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal JDW14_06710 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal JDW14_06715 PF00368 Hydroxymethylglutaryl-coenzyme A reductase JDW14_06725 PF01594 AI-2E family transporter JDW14_06730 PF10282 Lactonase, 7-bladed beta-propeller JDW14_06755 PF00701 Dihydrodipicolinate synthetase family JDW14_06760 PF05448 Acetyl xylan esterase (AXE1) JDW14_06770 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase JDW14_06775 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_06780 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_06790 PF01380 SIS domain JDW14_06790 PF01418 Helix-turn-helix domain, rpiR family JDW14_06795 PF00480 ROK family JDW14_06800 PF00107 Zinc-binding dehydrogenase JDW14_06800 PF08240 Alcohol dehydrogenase GroES-like domain JDW14_06805 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JDW14_06805 PF00005 ABC transporter JDW14_06810 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JDW14_06810 PF00005 ABC transporter JDW14_06815 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_06815 PF12911 N-terminal TM domain of oligopeptide transport permease C JDW14_06820 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_06825 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JDW14_06830 PF02615 Malate/L-lactate dehydrogenase JDW14_06835 PF07883 Cupin domain JDW14_06835 PF05899 Protein of unknown function (DUF861) JDW14_06840 PF00696 Amino acid kinase family JDW14_06850 PF06545 Protein of unknown function (DUF1116) JDW14_06860 PF00375 Sodium:dicarboxylate symporter family JDW14_06865 PF07690 Major Facilitator Superfamily JDW14_06870 PF01546 Peptidase family M20/M25/M40 JDW14_06875 PF07905 Purine catabolism regulatory protein-like family JDW14_06875 PF13556 PucR C-terminal helix-turn-helix domain JDW14_06875 PF17853 GGDEF-like domain JDW14_06885 PF17757 UvrB interaction domain JDW14_06885 PF12344 Ultra-violet resistance protein B JDW14_06885 PF04851 Type III restriction enzyme, res subunit JDW14_06885 PF02151 UvrB/uvrC motif JDW14_06885 PF00271 Helicase conserved C-terminal domain JDW14_06895 PF02384 N-6 DNA Methylase JDW14_06900 PF07669 Eco57I restriction-modification methylase JDW14_06910 PF01797 Transposase IS200 like JDW14_06920 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JDW14_06920 PF01348 Type II intron maturase JDW14_06955 PF02899 Phage integrase, N-terminal SAM-like domain JDW14_06955 PF00589 Phage integrase family JDW14_07000 PF00958 GMP synthase C terminal domain JDW14_07000 PF02540 NAD synthase JDW14_07000 PF00117 Glutamine amidotransferase class-I JDW14_07005 PF00485 Phosphoribulokinase / Uridine kinase family JDW14_07010 PF00288 GHMP kinases N terminal domain JDW14_07010 PF10509 Galactokinase galactose-binding signature JDW14_07010 PF08544 GHMP kinases C terminal JDW14_07020 PF00288 GHMP kinases N terminal domain JDW14_07020 PF08544 GHMP kinases C terminal JDW14_07025 PF01070 FMN-dependent dehydrogenase JDW14_07040 PF03060 Nitronate monooxygenase JDW14_07045 PF00296 Luciferase-like monooxygenase JDW14_07050 PF12008 Type I restriction and modification enzyme - subunit R C terminal JDW14_07050 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JDW14_07050 PF18766 SWI2/SNF2 ATPase JDW14_07055 PF01420 Type I restriction modification DNA specificity domain JDW14_07090 PF01797 Transposase IS200 like JDW14_07110 PF13280 WYL domain JDW14_07110 PF08279 HTH domain JDW14_07125 PF01348 Type II intron maturase JDW14_07125 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JDW14_07135 PF00145 C-5 cytosine-specific DNA methylase JDW14_07150 PF09556 HaeIII restriction endonuclease JDW14_07155 PF00145 C-5 cytosine-specific DNA methylase JDW14_07175 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JDW14_07195 PF00380 Ribosomal protein S9/S16 JDW14_07200 PF00572 Ribosomal protein L13 JDW14_07205 PF00654 Voltage gated chloride channel JDW14_07210 PF01327 Polypeptide deformylase JDW14_07215 PF13167 GTP-binding GTPase N-terminal JDW14_07215 PF16360 GTP-binding GTPase Middle Region JDW14_07215 PF01926 50S ribosome-binding GTPase JDW14_07225 PF01668 SmpB protein JDW14_07230 PF00773 RNB domain JDW14_07230 PF00575 S1 RNA binding domain JDW14_07230 PF17876 Cold shock domain JDW14_07230 PF08206 Ribonuclease B OB domain JDW14_07245 PF04203 Sortase domain JDW14_07265 PF00005 ABC transporter JDW14_07265 PF13732 Domain of unknown function (DUF4162) JDW14_07280 PF06414 Zeta toxin JDW14_07290 PF01501 Glycosyl transferase family 8 JDW14_07295 PF01501 Glycosyl transferase family 8 JDW14_07300 PF01501 Glycosyl transferase family 8 JDW14_07300 PF00535 Glycosyl transferase family 2 JDW14_07310 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JDW14_07310 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JDW14_07310 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JDW14_07315 PF01370 NAD dependent epimerase/dehydratase family JDW14_07330 PF13439 Glycosyltransferase Family 4 JDW14_07330 PF00534 Glycosyl transferases group 1 JDW14_07350 PF02350 UDP-N-acetylglucosamine 2-epimerase JDW14_07355 PF01370 NAD dependent epimerase/dehydratase family JDW14_07360 PF02719 Polysaccharide biosynthesis protein JDW14_07360 PF08485 Polysaccharide biosynthesis protein C-terminal JDW14_07375 PF02397 Bacterial sugar transferase JDW14_07380 PF02719 Polysaccharide biosynthesis protein JDW14_07385 PF03816 Cell envelope-related transcriptional attenuator domain JDW14_07395 PF13614 AAA domain JDW14_07400 PF02706 Chain length determinant protein JDW14_07405 PF01470 Pyroglutamyl peptidase JDW14_07485 PF00342 Phosphoglucose isomerase JDW14_07490 PF00575 S1 RNA binding domain JDW14_07495 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JDW14_07500 PF02681 Divergent PAP2 family JDW14_07505 PF07992 Pyridine nucleotide-disulphide oxidoreductase JDW14_07510 PF04608 Phosphatidylglycerophosphatase A JDW14_07515 PF00149 Calcineurin-like phosphoesterase JDW14_07520 PF09371 Tex-like protein N-terminal domain JDW14_07520 PF00575 S1 RNA binding domain JDW14_07520 PF17674 HHH domain JDW14_07520 PF16921 Tex protein YqgF-like domain JDW14_07525 PF01479 S4 domain JDW14_07525 PF00163 Ribosomal protein S4/S9 N-terminal domain JDW14_07530 PF00291 Pyridoxal-phosphate dependent enzyme JDW14_07545 PF04167 Protein of unknown function (DUF402) JDW14_07550 PF00664 ABC transporter transmembrane region JDW14_07550 PF00005 ABC transporter JDW14_07555 PF00664 ABC transporter transmembrane region JDW14_07555 PF00005 ABC transporter JDW14_07560 PF14815 NUDIX domain JDW14_07560 PF00633 Helix-hairpin-helix motif JDW14_07560 PF00730 HhH-GPD superfamily base excision DNA repair protein JDW14_07565 PF02631 RecX family JDW14_07570 PF13476 AAA domain JDW14_07575 PF01479 S4 domain JDW14_07575 PF01728 FtsJ-like methyltransferase JDW14_07580 PF00348 Polyprenyl synthetase JDW14_07585 PF02609 Exonuclease VII small subunit JDW14_07590 PF02601 Exonuclease VII, large subunit JDW14_07590 PF13742 OB-fold nucleic acid binding domain JDW14_07595 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JDW14_07595 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JDW14_07600 PF00999 Sodium/hydrogen exchanger family JDW14_07610 PF00588 SpoU rRNA Methylase family JDW14_07615 PF08331 Domain of unknown function (DUF1730) JDW14_07625 PF02142 MGS-like domain JDW14_07640 PF04002 RadC-like JAB domain JDW14_07645 PF04002 RadC-like JAB domain JDW14_07650 PF08245 Mur ligase middle domain JDW14_07650 PF02875 Mur ligase family, glutamate ligase domain JDW14_07655 PF01565 FAD binding domain JDW14_07655 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JDW14_07685 PF01192 RNA polymerase Rpb6 JDW14_07695 PF03816 Cell envelope-related transcriptional attenuator domain JDW14_07700 PF14748 Pyrroline-5-carboxylate reductase dimerisation JDW14_07700 PF03807 NADP oxidoreductase coenzyme F420-dependent JDW14_07705 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JDW14_07705 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JDW14_07730 PF16657 Maltogenic Amylase, C-terminal domain JDW14_07730 PF00128 Alpha amylase, catalytic domain JDW14_07735 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_07740 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_07745 PF01547 Bacterial extracellular solute-binding protein JDW14_07750 PF16874 Glycosyl hydrolase family 36 C-terminal domain JDW14_07750 PF16875 Glycosyl hydrolase family 36 N-terminal domain JDW14_07755 PF02311 AraC-like ligand binding domain JDW14_07755 PF12833 Helix-turn-helix domain JDW14_07760 PF05525 Branched-chain amino acid transport protein JDW14_07765 PF01515 Phosphate acetyl/butaryl transferase JDW14_07770 PF02664 S-Ribosylhomocysteinase (LuxS) JDW14_07775 PF01207 Dihydrouridine synthase (Dus) JDW14_07780 PF01430 Hsp33 protein JDW14_07785 PF01434 Peptidase family M41 JDW14_07785 PF06480 FtsH Extracellular JDW14_07785 PF17862 AAA+ lid domain JDW14_07785 PF00004 ATPase family associated with various cellular activities (AAA) JDW14_07790 PF00156 Phosphoribosyl transferase domain JDW14_07795 PF01171 PP-loop family JDW14_07795 PF11734 TilS substrate C-terminal domain JDW14_07800 PF00575 S1 RNA binding domain JDW14_07810 PF01479 S4 domain JDW14_07815 PF02559 CarD-like/TRCF domain JDW14_07815 PF00271 Helicase conserved C-terminal domain JDW14_07815 PF00270 DEAD/DEAH box helicase JDW14_07815 PF17757 UvrB interaction domain JDW14_07815 PF03461 TRCF domain JDW14_07820 PF01195 Peptidyl-tRNA hydrolase JDW14_07825 PF00056 lactate/malate dehydrogenase, NAD binding domain JDW14_07825 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JDW14_07830 PF01029 NusB family JDW14_07835 PF03780 Asp23 family, cell envelope-related function JDW14_07840 PF01321 Creatinase/Prolidase N-terminal domain JDW14_07840 PF00557 Metallopeptidase family M24 JDW14_07875 PF00437 Type II/IV secretion system protein JDW14_07885 PF07288 Protein of unknown function (DUF1447) JDW14_07890 PF00753 Metallo-beta-lactamase superfamily JDW14_07890 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JDW14_07890 PF17770 Ribonuclease J C-terminal domain JDW14_07895 PF00009 Elongation factor Tu GTP binding domain JDW14_07895 PF03144 Elongation factor Tu domain 2 JDW14_07895 PF16658 Class II release factor RF3, C-terminal domain JDW14_07905 PF00890 FAD binding domain JDW14_07905 PF04205 FMN-binding domain JDW14_07910 PF02661 Fic/DOC family JDW14_07915 PF00005 ABC transporter JDW14_07940 PF00152 tRNA synthetases class II (D, K and N) JDW14_07940 PF01336 OB-fold nucleic acid binding domain JDW14_07950 PF12631 MnmE helical domain JDW14_07950 PF01926 50S ribosome-binding GTPase JDW14_07950 PF10396 GTP-binding protein TrmE N-terminus JDW14_07955 PF04298 Putative neutral zinc metallopeptidase JDW14_07970 PF00005 ABC transporter JDW14_07980 PF02441 Flavoprotein JDW14_07980 PF04127 DNA / pantothenate metabolism flavoprotein JDW14_07985 PF02386 Cation transport protein JDW14_07990 PF00857 Isochorismatase family JDW14_08005 PF03448 MgtE intracellular N domain JDW14_08005 PF01769 Divalent cation transporter JDW14_08005 PF00571 CBS domain JDW14_08010 PF00849 RNA pseudouridylate synthase JDW14_08020 PF01513 ATP-NAD kinase JDW14_08025 PF04607 Region found in RelA / SpoT proteins JDW14_08040 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain JDW14_08040 PF02222 ATP-grasp domain JDW14_08045 PF01381 Helix-turn-helix JDW14_08055 PF03129 Anticodon binding domain JDW14_08055 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JDW14_08055 PF02824 TGS domain JDW14_08055 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JDW14_08060 PF02772 S-adenosylmethionine synthetase, central domain JDW14_08060 PF00438 S-adenosylmethionine synthetase, N-terminal domain JDW14_08060 PF02773 S-adenosylmethionine synthetase, C-terminal domain JDW14_08070 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JDW14_08070 PF07992 Pyridine nucleotide-disulphide oxidoreductase JDW14_08080 PF05343 M42 glutamyl aminopeptidase JDW14_08110 PF00248 Aldo/keto reductase family JDW14_08115 PF01263 Aldose 1-epimerase JDW14_08120 PF10509 Galactokinase galactose-binding signature JDW14_08120 PF08544 GHMP kinases C terminal JDW14_08120 PF00288 GHMP kinases N terminal domain JDW14_08130 PF02590 Predicted SPOUT methyltransferase JDW14_08140 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JDW14_08140 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JDW14_08140 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JDW14_08140 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JDW14_08150 PF01197 Ribosomal protein L31 JDW14_08155 PF01636 Phosphotransferase enzyme family JDW14_08190 PF03960 ArsC family JDW14_08200 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JDW14_08205 PF12848 ABC transporter JDW14_08205 PF00005 ABC transporter JDW14_08215 PF01783 Ribosomal L32p protein family JDW14_08225 PF05636 HIGH Nucleotidyl Transferase JDW14_08240 PF01966 HD domain JDW14_08245 PF01467 Cytidylyltransferase-like JDW14_08250 PF01985 CRS1 / YhbY (CRM) domain JDW14_08255 PF01926 50S ribosome-binding GTPase JDW14_08270 PF03006 Haemolysin-III related JDW14_08275 PF02566 OsmC-like protein JDW14_08285 PF00534 Glycosyl transferases group 1 JDW14_08285 PF13439 Glycosyltransferase Family 4 JDW14_08295 PF02896 PEP-utilising enzyme, TIM barrel domain JDW14_08295 PF05524 PEP-utilising enzyme, N-terminal JDW14_08295 PF00391 PEP-utilising enzyme, mobile domain JDW14_08300 PF00381 PTS HPr component phosphorylation site JDW14_08310 PF00453 Ribosomal protein L20 JDW14_08315 PF01632 Ribosomal protein L35 JDW14_08320 PF05198 Translation initiation factor IF-3, N-terminal domain JDW14_08320 PF00707 Translation initiation factor IF-3, C-terminal domain JDW14_08325 PF04204 Homoserine O-succinyltransferase JDW14_08335 PF00768 D-alanyl-D-alanine carboxypeptidase JDW14_08335 PF07943 Penicillin-binding protein 5, C-terminal domain JDW14_08345 PF00689 Cation transporting ATPase, C-terminus JDW14_08345 PF00690 Cation transporter/ATPase, N-terminus JDW14_08355 PF02627 Carboxymuconolactone decarboxylase family JDW14_08360 PF00860 Permease family JDW14_08365 PF00005 ABC transporter JDW14_08370 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_08375 PF00497 Bacterial extracellular solute-binding proteins, family 3 JDW14_08385 PF01695 IstB-like ATP binding protein JDW14_08385 PF07319 Primosomal protein DnaI N-terminus JDW14_08395 PF03477 ATP cone domain JDW14_08400 PF01121 Dephospho-CoA kinase JDW14_08405 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JDW14_08405 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JDW14_08405 PF06827 Zinc finger found in FPG and IleRS JDW14_08410 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JDW14_08410 PF01367 5'-3' exonuclease, C-terminal SAM fold JDW14_08410 PF00476 DNA polymerase family A JDW14_08415 PF02901 Pyruvate formate lyase-like JDW14_08415 PF01228 Glycine radical JDW14_08425 PF13443 Cro/C1-type HTH DNA-binding domain JDW14_08435 PF03641 Possible lysine decarboxylase JDW14_08440 PF03952 Enolase, N-terminal domain JDW14_08440 PF00113 Enolase, C-terminal TIM barrel domain JDW14_08445 PF06415 BPG-independent PGAM N-terminus (iPGM_N) JDW14_08445 PF01676 Metalloenzyme superfamily JDW14_08450 PF00121 Triosephosphate isomerase JDW14_08455 PF00162 Phosphoglycerate kinase JDW14_08460 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JDW14_08460 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JDW14_08465 PF04198 Putative sugar-binding domain JDW14_08470 PF00574 Clp protease JDW14_08480 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_08485 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_08490 PF00005 ABC transporter JDW14_08490 PF08402 TOBE domain JDW14_08495 PF02872 5'-nucleotidase, C-terminal domain JDW14_08495 PF00149 Calcineurin-like phosphoesterase JDW14_08505 PF00118 TCP-1/cpn60 chaperonin family JDW14_08510 PF00166 Chaperonin 10 Kd subunit JDW14_08515 PF00465 Iron-containing alcohol dehydrogenase JDW14_08525 PF06971 Putative DNA-binding protein N-terminus JDW14_08525 PF02629 CoA binding domain JDW14_08535 PF00154 recA bacterial DNA recombination protein JDW14_08540 PF00483 Nucleotidyl transferase JDW14_08545 PF00877 NlpC/P60 family JDW14_08550 PF01479 S4 domain JDW14_08550 PF00579 tRNA synthetases class I (W and Y) JDW14_08560 PF02525 Flavodoxin-like fold JDW14_08570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDW14_08570 PF00512 His Kinase A (phospho-acceptor) domain JDW14_08570 PF00672 HAMP domain JDW14_08575 PF00072 Response regulator receiver domain JDW14_08575 PF00486 Transcriptional regulatory protein, C terminal JDW14_08580 PF00436 Single-strand binding protein family JDW14_08585 PF02650 WhiA C-terminal HTH domain JDW14_08585 PF10298 WhiA N-terminal LAGLIDADG-like domain JDW14_08585 PF14527 WhiA LAGLIDADG-like domain JDW14_08590 PF01933 Uncharacterised protein family UPF0052 JDW14_08595 PF03668 P-loop ATPase protein family JDW14_08600 PF00005 ABC transporter JDW14_08600 PF16326 ABC transporter C-terminal domain JDW14_08600 PF12848 ABC transporter JDW14_08605 PF01116 Fructose-bisphosphate aldolase class-II JDW14_08610 PF05066 HB1, ASXL, restriction endonuclease HTH domain JDW14_08620 PF03099 Biotin/lipoate A/B protein ligase family JDW14_08625 PF01966 HD domain JDW14_08640 PF03180 NLPA lipoprotein JDW14_08645 PF03180 NLPA lipoprotein JDW14_08650 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_08655 PF09383 NIL domain JDW14_08655 PF00005 ABC transporter JDW14_08660 PF00155 Aminotransferase class I and II JDW14_08665 PF01361 Tautomerase enzyme JDW14_08680 PF07556 Protein of unknown function (DUF1538) JDW14_08685 PF04983 RNA polymerase Rpb1, domain 3 JDW14_08685 PF05000 RNA polymerase Rpb1, domain 4 JDW14_08685 PF04997 RNA polymerase Rpb1, domain 1 JDW14_08685 PF00623 RNA polymerase Rpb1, domain 2 JDW14_08685 PF04998 RNA polymerase Rpb1, domain 5 JDW14_08690 PF10385 RNA polymerase beta subunit external 1 domain JDW14_08690 PF04563 RNA polymerase beta subunit JDW14_08690 PF04561 RNA polymerase Rpb2, domain 2 JDW14_08690 PF00562 RNA polymerase Rpb2, domain 6 JDW14_08690 PF04560 RNA polymerase Rpb2, domain 7 JDW14_08690 PF04565 RNA polymerase Rpb2, domain 3 JDW14_08700 PF00753 Metallo-beta-lactamase superfamily JDW14_08705 PF00842 Alanine racemase, C-terminal domain JDW14_08705 PF01168 Alanine racemase, N-terminal domain JDW14_08775 PF00589 Phage integrase family JDW14_08775 PF02899 Phage integrase, N-terminal SAM-like domain JDW14_08780 PF01648 4'-phosphopantetheinyl transferase superfamily JDW14_08785 PF00270 DEAD/DEAH box helicase JDW14_08785 PF00271 Helicase conserved C-terminal domain JDW14_08905 PF03358 NADPH-dependent FMN reductase JDW14_08905 PF04205 FMN-binding domain JDW14_08905 PF00890 FAD binding domain JDW14_08915 PF01226 Formate/nitrite transporter JDW14_08920 PF05958 tRNA (Uracil-5-)-methyltransferase JDW14_08920 PF01938 TRAM domain JDW14_08935 PF00005 ABC transporter JDW14_08935 PF00664 ABC transporter transmembrane region JDW14_08940 PF00672 HAMP domain JDW14_08940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDW14_08940 PF00512 His Kinase A (phospho-acceptor) domain JDW14_08945 PF00486 Transcriptional regulatory protein, C terminal JDW14_08945 PF00072 Response regulator receiver domain JDW14_08950 PF01966 HD domain JDW14_08965 PF01712 Deoxynucleoside kinase JDW14_08970 PF08534 Redoxin JDW14_08975 PF00440 Bacterial regulatory proteins, tetR family JDW14_08995 PF08531 Alpha-L-rhamnosidase N-terminal domain JDW14_08995 PF05592 Bacterial alpha-L-rhamnosidase concanavalin-like domain JDW14_08995 PF17390 Bacterial alpha-L-rhamnosidase C-terminal domain JDW14_08995 PF17389 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain JDW14_09005 PF16355 Domain of unknown function (DUF4982) JDW14_09005 PF00703 Glycosyl hydrolases family 2 JDW14_09005 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JDW14_09005 PF02837 Glycosyl hydrolases family 2, sugar binding domain JDW14_09015 PF12833 Helix-turn-helix domain JDW14_09025 PF00703 Glycosyl hydrolases family 2 JDW14_09025 PF02837 Glycosyl hydrolases family 2, sugar binding domain JDW14_09025 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JDW14_09030 PF02378 Phosphotransferase system, EIIC JDW14_09035 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JDW14_09040 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit JDW14_09045 PF05043 Mga helix-turn-helix domain JDW14_09045 PF08280 M protein trans-acting positive regulator (MGA) HTH domain JDW14_09055 PF05592 Bacterial alpha-L-rhamnosidase concanavalin-like domain JDW14_09055 PF17390 Bacterial alpha-L-rhamnosidase C-terminal domain JDW14_09055 PF08531 Alpha-L-rhamnosidase N-terminal domain JDW14_09055 PF17389 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain JDW14_09060 PF12833 Helix-turn-helix domain JDW14_09060 PF07883 Cupin domain JDW14_09065 PF13173 AAA domain JDW14_09065 PF13635 Domain of unknown function (DUF4143) JDW14_09080 PF13302 Acetyltransferase (GNAT) domain JDW14_09085 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JDW14_09090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JDW14_09090 PF03466 LysR substrate binding domain JDW14_09095 PF08531 Alpha-L-rhamnosidase N-terminal domain JDW14_09095 PF17390 Bacterial alpha-L-rhamnosidase C-terminal domain JDW14_09095 PF05592 Bacterial alpha-L-rhamnosidase concanavalin-like domain JDW14_09095 PF17389 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain JDW14_09100 PF00933 Glycosyl hydrolase family 3 N terminal domain JDW14_09115 PF13419 Haloacid dehalogenase-like hydrolase JDW14_09125 PF08353 Domain of unknown function (DUF1727) JDW14_09125 PF08245 Mur ligase middle domain JDW14_09130 PF07685 CobB/CobQ-like glutamine amidotransferase domain JDW14_09135 PF03099 Biotin/lipoate A/B protein ligase family JDW14_09135 PF10437 Bacterial lipoate protein ligase C-terminus JDW14_09140 PF00753 Metallo-beta-lactamase superfamily JDW14_09145 PF05343 M42 glutamyl aminopeptidase JDW14_09155 PF00253 Ribosomal protein S14p/S29e JDW14_09160 PF00471 Ribosomal protein L33 JDW14_09165 PF04205 FMN-binding domain JDW14_09165 PF00890 FAD binding domain JDW14_09165 PF03358 NADPH-dependent FMN reductase JDW14_09170 PF03358 NADPH-dependent FMN reductase JDW14_09170 PF04205 FMN-binding domain JDW14_09170 PF00890 FAD binding domain JDW14_09175 PF02424 ApbE family JDW14_09180 PF04304 Protein of unknown function (DUF454) JDW14_09200 PF12833 Helix-turn-helix domain JDW14_09215 PF13597 Anaerobic ribonucleoside-triphosphate reductase JDW14_09215 PF03477 ATP cone domain JDW14_09230 PF16874 Glycosyl hydrolase family 36 C-terminal domain JDW14_09230 PF00485 Phosphoribulokinase / Uridine kinase family JDW14_09230 PF16875 Glycosyl hydrolase family 36 N-terminal domain JDW14_09235 PF02578 Multi-copper polyphenol oxidoreductase laccase JDW14_09250 PF02378 Phosphotransferase system, EIIC JDW14_09250 PF00367 phosphotransferase system, EIIB JDW14_09255 PF01380 SIS domain JDW14_09260 PF01418 Helix-turn-helix domain, rpiR family JDW14_09260 PF01380 SIS domain JDW14_09265 PF12833 Helix-turn-helix domain JDW14_09265 PF02311 AraC-like ligand binding domain JDW14_09270 PF13416 Bacterial extracellular solute-binding protein JDW14_09275 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_09280 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_09285 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JDW14_09285 PF00703 Glycosyl hydrolases family 2 JDW14_09285 PF02929 Beta galactosidase small chain JDW14_09285 PF02837 Glycosyl hydrolases family 2, sugar binding domain JDW14_09295 PF13229 Right handed beta helix region JDW14_09305 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_09310 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_09315 PF02614 Glucuronate isomerase JDW14_09320 PF16257 tagaturonate epimerase JDW14_09325 PF07470 Glycosyl Hydrolase Family 88 JDW14_09330 PF00106 short chain dehydrogenase JDW14_09335 PF03786 D-mannonate dehydratase (UxuA) JDW14_09340 PF01554 MatE JDW14_09345 PF12833 Helix-turn-helix domain JDW14_09345 PF17853 GGDEF-like domain JDW14_09360 PF01738 Dienelactone hydrolase family JDW14_09365 PF13416 Bacterial extracellular solute-binding protein JDW14_09370 PF00295 Glycosyl hydrolases family 28 JDW14_09375 PF13416 Bacterial extracellular solute-binding protein JDW14_09385 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_09390 PF00528 Binding-protein-dependent transport system inner membrane component JDW14_09395 PF01614 Bacterial transcriptional regulator JDW14_09395 PF09339 IclR helix-turn-helix domain JDW14_09400 PF12833 Helix-turn-helix domain JDW14_09405 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JDW14_09415 PF03480 Bacterial extracellular solute-binding protein, family 7 JDW14_09420 PF07470 Glycosyl Hydrolase Family 88 JDW14_09425 PF05336 L-rhamnose mutarotase JDW14_09440 PF13472 GDSL-like Lipase/Acylhydrolase family JDW14_09455 PF04962 KduI/IolB family JDW14_09465 PF01081 KDPG and KHG aldolase JDW14_09470 PF00933 Glycosyl hydrolase family 3 N terminal domain JDW14_09480 PF00106 short chain dehydrogenase JDW14_09485 PF03786 D-mannonate dehydratase (UxuA) JDW14_09490 PF02614 Glucuronate isomerase JDW14_09495 PF01081 KDPG and KHG aldolase JDW14_09500 PF07729 FCD domain JDW14_09500 PF00392 Bacterial regulatory proteins, gntR family JDW14_09505 PF02837 Glycosyl hydrolases family 2, sugar binding domain JDW14_09505 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JDW14_09505 PF00703 Glycosyl hydrolases family 2 JDW14_09515 PF00703 Glycosyl hydrolases family 2 JDW14_09515 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JDW14_09515 PF02837 Glycosyl hydrolases family 2, sugar binding domain JDW14_09520 PF00135 Carboxylesterase family JDW14_09540 PF04205 FMN-binding domain JDW14_09540 PF00890 FAD binding domain JDW14_09550 PF00478 IMP dehydrogenase / GMP reductase domain JDW14_09550 PF00571 CBS domain JDW14_09560 PF06071 Protein of unknown function (DUF933) JDW14_09560 PF01926 50S ribosome-binding GTPase JDW14_09565 PF06107 Bacterial protein of unknown function (DUF951) JDW14_09570 PF02195 ParB-like nuclease domain JDW14_09570 PF17762 HTH domain found in ParB protein JDW14_09575 PF13614 AAA domain JDW14_09580 PF02527 rRNA small subunit methyltransferase G JDW14_09585 PF00881 Nitroreductase family JDW14_09590 PF12822 ECF transporter, substrate-specific component JDW14_09595 PF01266 FAD dependent oxidoreductase JDW14_09600 PF01741 Large-conductance mechanosensitive channel, MscL JDW14_09605 PF01132 Elongation factor P (EF-P) OB domain JDW14_09605 PF08207 Elongation factor P (EF-P) KOW-like domain JDW14_09605 PF09285 Elongation factor P, C-terminal JDW14_09610 PF00155 Aminotransferase class I and II JDW14_09620 PF01381 Helix-turn-helix JDW14_09635 PF00005 ABC transporter JDW14_09640 PF00072 Response regulator receiver domain JDW14_09640 PF00486 Transcriptional regulatory protein, C terminal JDW14_09645 PF00512 His Kinase A (phospho-acceptor) domain JDW14_09645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDW14_09650 PF04074 YhcH/YjgK/YiaL JDW14_09655 PF03352 Methyladenine glycosylase JDW14_09670 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JDW14_09675 PF01541 GIY-YIG catalytic domain JDW14_09680 PF05175 Methyltransferase small domain JDW14_09685 PF06156 Initiation control protein YabA JDW14_09695 PF06153 Cyclic-di-AMP receptor JDW14_09700 PF02223 Thymidylate kinase JDW14_09705 PF02132 RecR protein JDW14_09705 PF13662 Toprim domain JDW14_09710 PF02575 YbaB/EbfC DNA-binding family JDW14_09715 PF12169 DNA polymerase III subunits gamma and tau domain III JDW14_09725 PF14437 MafB19-like deaminase JDW14_09745 PF02861 Clp amino terminal domain, pathogenicity island component JDW14_09745 PF17871 AAA lid domain JDW14_09745 PF07724 AAA domain (Cdc48 subfamily) JDW14_09745 PF10431 C-terminal, D2-small domain, of ClpB protein JDW14_09745 PF00004 ATPase family associated with various cellular activities (AAA) JDW14_09750 PF17727 CtsR C-terminal dimerization domain JDW14_09750 PF05848 CtsR N-terminal HTH domain JDW14_09850 PF02386 Cation transport protein JDW14_09855 PF02254 TrkA-N domain JDW14_09855 PF02080 TrkA-C domain JDW14_09860 PF07687 Peptidase dimerisation domain JDW14_09860 PF01546 Peptidase family M20/M25/M40 JDW14_09865 PF13932 GidA associated domain JDW14_09865 PF01134 Glucose inhibited division protein A JDW14_09870 PF00293 NUDIX domain JDW14_09875 PF10396 GTP-binding protein TrmE N-terminus JDW14_09875 PF12631 MnmE helical domain JDW14_09875 PF01926 50S ribosome-binding GTPase JDW14_09880 PF00392 Bacterial regulatory proteins, gntR family JDW14_09880 PF07702 UTRA domain JDW14_09890 PF16657 Maltogenic Amylase, C-terminal domain JDW14_09890 PF00128 Alpha amylase, catalytic domain JDW14_09895 PF02378 Phosphotransferase system, EIIC JDW14_09895 PF00367 phosphotransferase system, EIIB JDW14_09900 PF14804 Jag N-terminus JDW14_09900 PF01424 R3H domain JDW14_09905 PF02096 60Kd inner membrane protein JDW14_09910 PF00825 Ribonuclease P JDW14_09915 PF00468 Ribosomal protein L34