locus-tag class description APT62_00010 PF00005 ABC transporter APT62_00010 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT62_00015 PF00005 ABC transporter APT62_00015 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT62_00020 PF00528 Binding-protein-dependent transport system inner membrane component APT62_00025 PF00528 Binding-protein-dependent transport system inner membrane component APT62_00030 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT62_00035 PF01063 Amino-transferase class IV APT62_00040 PF00465 Iron-containing alcohol dehydrogenase APT62_00045 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT62_00050 PF01084 Ribosomal protein S18 APT62_00055 PF00436 Single-strand binding protein family APT62_00060 PF01250 Ribosomal protein S6 APT62_00065 PF03989 DNA gyrase C-terminal domain, beta-propeller APT62_00065 PF00521 DNA gyrase/topoisomerase IV, subunit A APT62_00070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT62_00070 PF00986 DNA gyrase B subunit, carboxyl terminus APT62_00070 PF00204 DNA gyrase B APT62_00070 PF01751 Toprim domain APT62_00075 PF02463 RecF/RecN/SMC N terminal domain APT62_00085 PF00712 DNA polymerase III beta subunit, N-terminal domain APT62_00085 PF02768 DNA polymerase III beta subunit, C-terminal domain APT62_00085 PF02767 DNA polymerase III beta subunit, central domain APT62_00090 PF08299 Bacterial dnaA protein helix-turn-helix APT62_00090 PF00308 Bacterial dnaA protein APT62_00095 PF00468 Ribosomal protein L34 APT62_00100 PF00825 Ribonuclease P APT62_00105 PF02096 60Kd inner membrane protein APT62_00110 PF01424 R3H domain APT62_00110 PF14804 Jag N-terminus APT62_00115 PF13382 Adenine deaminase C-terminal domain APT62_00115 PF01979 Amidohydrolase family APT62_00120 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APT62_00120 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain APT62_00125 PF02378 Phosphotransferase system, EIIC APT62_00125 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APT62_00130 PF05043 Mga helix-turn-helix domain APT62_00130 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APT62_00130 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APT62_00130 PF00874 PRD domain APT62_00130 PF08279 HTH domain APT62_00135 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APT62_00140 PF05552 Conserved TM helix APT62_00150 PF12631 MnmE helical domain APT62_00150 PF10396 GTP-binding protein TrmE N-terminus APT62_00150 PF01926 50S ribosome-binding GTPase APT62_00155 PF13932 GidA associated domain APT62_00155 PF01134 Glucose inhibited division protein A APT62_00165 PF02527 rRNA small subunit methyltransferase G APT62_00170 PF13614 AAA domain APT62_00175 PF17762 HTH domain found in ParB protein APT62_00175 PF02195 ParB-like nuclease domain APT62_00180 PF06107 Bacterial protein of unknown function (DUF951) APT62_00185 PF01926 50S ribosome-binding GTPase APT62_00185 PF06071 Protein of unknown function (DUF933) APT62_00205 PF00478 IMP dehydrogenase / GMP reductase domain APT62_00205 PF00571 CBS domain APT62_00210 PF00072 Response regulator receiver domain APT62_00210 PF00486 Transcriptional regulatory protein, C terminal APT62_00215 PF00512 His Kinase A (phospho-acceptor) domain APT62_00215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT62_00220 PF00768 D-alanyl-D-alanine carboxypeptidase APT62_00220 PF07943 Penicillin-binding protein 5, C-terminal domain APT62_00225 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APT62_00225 PF02403 Seryl-tRNA synthetase N-terminal domain APT62_00230 PF01625 Peptide methionine sulfoxide reductase APT62_00295 PF01470 Pyroglutamyl peptidase APT62_00305 PF08000 Bacterial PH domain APT62_00315 PF05343 M42 glutamyl aminopeptidase APT62_00325 PF00582 Universal stress protein family APT62_00330 PF00056 lactate/malate dehydrogenase, NAD binding domain APT62_00330 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain APT62_00335 PF02535 ZIP Zinc transporter APT62_00340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT62_00345 PF01053 Cys/Met metabolism PLP-dependent enzyme APT62_00350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT62_00350 PF03466 LysR substrate binding domain APT62_00355 PF00375 Sodium:dicarboxylate symporter family APT62_00360 PF01380 SIS domain APT62_00360 PF01418 Helix-turn-helix domain, rpiR family APT62_00365 PF11975 Family 4 glycosyl hydrolase C-terminal domain APT62_00365 PF02056 Family 4 glycosyl hydrolase APT62_00385 PF03780 Asp23 family, cell envelope-related function APT62_00395 PF01809 Putative membrane protein insertion efficiency factor APT62_00400 PF07739 TipAS antibiotic-recognition domain APT62_00400 PF13411 MerR HTH family regulatory protein APT62_00405 PF03551 Transcriptional regulator PadR-like family APT62_00410 PF13610 DDE domain APT62_00435 PF13610 DDE domain APT62_00440 PF01719 Plasmid replication protein APT62_00455 PF13610 DDE domain APT62_00465 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APT62_00465 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APT62_00465 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APT62_00465 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APT62_00470 PF07949 YbbR-like protein APT62_00475 PF02457 DisA bacterial checkpoint controller nucleotide-binding APT62_00480 PF01479 S4 domain APT62_00480 PF00849 RNA pseudouridylate synthase APT62_00500 PF01380 SIS domain APT62_00510 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase APT62_00515 PF02378 Phosphotransferase system, EIIC APT62_00515 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APT62_00520 PF00874 PRD domain APT62_00520 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APT62_00520 PF05043 Mga helix-turn-helix domain APT62_00520 PF08279 HTH domain APT62_00520 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APT62_00525 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APT62_00530 PF01232 Mannitol dehydrogenase Rossmann domain APT62_00530 PF08125 Mannitol dehydrogenase C-terminal domain APT62_00535 PF00155 Aminotransferase class I and II APT62_00540 PF03180 NLPA lipoprotein APT62_00565 PF13649 Methyltransferase domain APT62_00575 PF01323 DSBA-like thioredoxin domain APT62_00580 PF01070 FMN-dependent dehydrogenase APT62_00585 PF00860 Permease family APT62_00590 PF00128 Alpha amylase, catalytic domain APT62_00600 PF00456 Transketolase, thiamine diphosphate binding domain APT62_00600 PF02780 Transketolase, C-terminal domain APT62_00600 PF02779 Transketolase, pyrimidine binding domain APT62_00605 PF00923 Transaldolase/Fructose-6-phosphate aldolase APT62_00610 PF00293 NUDIX domain APT62_00625 PF09180 Prolyl-tRNA synthetase, C-terminal APT62_00625 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APT62_00625 PF03129 Anticodon binding domain APT62_00635 PF00005 ABC transporter APT62_00640 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT62_00640 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT62_00640 PF00205 Thiamine pyrophosphate enzyme, central domain APT62_00645 PF10369 Small subunit of acetolactate synthase APT62_00645 PF01842 ACT domain APT62_00650 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain APT62_00650 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain APT62_00655 PF00585 C-terminal regulatory domain of Threonine dehydratase APT62_00655 PF00291 Pyridoxal-phosphate dependent enzyme APT62_00660 PF00874 PRD domain APT62_00660 PF03123 CAT RNA binding domain APT62_00665 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 APT62_00665 PF00367 phosphotransferase system, EIIB APT62_00665 PF02378 Phosphotransferase system, EIIC APT62_00670 PF00232 Glycosyl hydrolase family 1 APT62_00675 PF00135 Carboxylesterase family APT62_00680 PF05979 Bacterial protein of unknown function (DUF896) APT62_00685 PF01738 Dienelactone hydrolase family APT62_00690 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT62_00700 PF00814 Glycoprotease family APT62_00705 PF00583 Acetyltransferase (GNAT) family APT62_00710 PF00583 Acetyltransferase (GNAT) family APT62_00715 PF00814 Glycoprotease family APT62_00730 PF03851 UV-endonuclease UvdE APT62_00740 PF00465 Iron-containing alcohol dehydrogenase APT62_00745 PF01207 Dihydrouridine synthase (Dus) APT62_00755 PF02378 Phosphotransferase system, EIIC APT62_00755 PF00367 phosphotransferase system, EIIB APT62_00760 PF11975 Family 4 glycosyl hydrolase C-terminal domain APT62_00760 PF02056 Family 4 glycosyl hydrolase APT62_00765 PF01418 Helix-turn-helix domain, rpiR family APT62_00765 PF01380 SIS domain APT62_00775 PF03372 Endonuclease/Exonuclease/phosphatase family APT62_00780 PF00367 phosphotransferase system, EIIB APT62_00780 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 APT62_00780 PF02378 Phosphotransferase system, EIIC APT62_00785 PF00128 Alpha amylase, catalytic domain APT62_00785 PF02903 Alpha amylase, N-terminal ig-like domain APT62_00790 PF13416 Bacterial extracellular solute-binding protein APT62_00795 PF00528 Binding-protein-dependent transport system inner membrane component APT62_00800 PF00528 Binding-protein-dependent transport system inner membrane component APT62_00810 PF00005 ABC transporter APT62_00810 PF17912 MalK OB fold domain APT62_00810 PF03459 TOBE domain APT62_00815 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APT62_00815 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APT62_00830 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APT62_00830 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APT62_00835 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family APT62_00835 PF00356 Bacterial regulatory proteins, lacI family APT62_00840 PF02446 4-alpha-glucanotransferase APT62_00845 PF00343 Carbohydrate phosphorylase APT62_00855 PF00480 ROK family APT62_00890 PF00534 Glycosyl transferases group 1 APT62_00890 PF13439 Glycosyltransferase Family 4 APT62_00900 PF03600 Citrate transporter APT62_00905 PF00180 Isocitrate/isopropylmalate dehydrogenase APT62_00905 PF18324 Hypothetical protein TT1725 APT62_00910 PF17727 CtsR C-terminal dimerization domain APT62_00910 PF05848 CtsR N-terminal HTH domain APT62_00915 PF07724 AAA domain (Cdc48 subfamily) APT62_00915 PF00004 ATPase family associated with various cellular activities (AAA) APT62_00915 PF10431 C-terminal, D2-small domain, of ClpB protein APT62_00915 PF17871 AAA lid domain APT62_00915 PF02861 Clp amino terminal domain, pathogenicity island component APT62_00930 PF01156 Inosine-uridine preferring nucleoside hydrolase APT62_00935 PF00392 Bacterial regulatory proteins, gntR family APT62_00935 PF07702 UTRA domain APT62_00940 PF16657 Maltogenic Amylase, C-terminal domain APT62_00940 PF00128 Alpha amylase, catalytic domain APT62_00945 PF00367 phosphotransferase system, EIIB APT62_00945 PF02378 Phosphotransferase system, EIIC APT62_00950 PF14437 MafB19-like deaminase APT62_00960 PF01496 V-type ATPase 116kDa subunit family APT62_00965 PF00137 ATP synthase subunit C APT62_00970 PF01991 ATP synthase (E/31 kDa) subunit APT62_00975 PF01992 ATP synthase (C/AC39) subunit APT62_00980 PF01990 ATP synthase (F/14-kDa) subunit APT62_00985 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APT62_00985 PF02874 ATP synthase alpha/beta family, beta-barrel domain APT62_00985 PF16886 ATPsynthase alpha/beta subunit N-term extension APT62_00990 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APT62_00990 PF02874 ATP synthase alpha/beta family, beta-barrel domain APT62_00995 PF01813 ATP synthase subunit D APT62_01010 PF00271 Helicase conserved C-terminal domain APT62_01010 PF00270 DEAD/DEAH box helicase APT62_01010 PF03880 DbpA RNA binding domain APT62_01015 PF00293 NUDIX domain APT62_01020 PF08240 Alcohol dehydrogenase GroES-like domain APT62_01020 PF00107 Zinc-binding dehydrogenase APT62_01025 PF01557 Fumarylacetoacetate (FAA) hydrolase family APT62_01030 PF00753 Metallo-beta-lactamase superfamily APT62_01045 PF03328 HpcH/HpaI aldolase/citrate lyase family APT62_01050 PF12848 ABC transporter APT62_01050 PF16326 ABC transporter C-terminal domain APT62_01050 PF00005 ABC transporter APT62_01055 PF06971 Putative DNA-binding protein N-terminus APT62_01055 PF02629 CoA binding domain APT62_01065 PF00166 Chaperonin 10 Kd subunit APT62_01070 PF00118 TCP-1/cpn60 chaperonin family APT62_01075 PF01425 Amidase APT62_01080 PF14698 Argininosuccinate lyase C-terminal APT62_01080 PF00206 Lyase APT62_01085 PF00528 Binding-protein-dependent transport system inner membrane component APT62_01090 PF00764 Arginosuccinate synthase APT62_01095 PF03358 NADPH-dependent FMN reductase APT62_01100 PF00528 Binding-protein-dependent transport system inner membrane component APT62_01110 PF02397 Bacterial sugar transferase APT62_01115 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family APT62_01115 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain APT62_01115 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain APT62_01120 PF02540 NAD synthase APT62_01145 PF02146 Sir2 family APT62_01150 PF02913 FAD linked oxidases, C-terminal domain APT62_01150 PF01565 FAD binding domain APT62_01155 PF01205 Uncharacterized protein family UPF0029 APT62_01155 PF09186 Domain of unknown function (DUF1949) APT62_01160 PF02645 Uncharacterised protein, DegV family COG1307 APT62_01165 PF04851 Type III restriction enzyme, res subunit APT62_01165 PF00271 Helicase conserved C-terminal domain APT62_01175 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus APT62_01175 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein APT62_01180 PF01043 SecA preprotein cross-linking domain APT62_01180 PF07517 SecA DEAD-like domain APT62_01180 PF02810 SEC-C motif APT62_01180 PF07516 SecA Wing and Scaffold domain APT62_01185 PF00472 RF-1 domain APT62_01185 PF03462 PCRF domain APT62_01190 PF00486 Transcriptional regulatory protein, C terminal APT62_01190 PF00072 Response regulator receiver domain APT62_01195 PF00989 PAS fold APT62_01195 PF00512 His Kinase A (phospho-acceptor) domain APT62_01195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT62_01195 PF16736 Single Cache-like APT62_01200 PF12849 PBP superfamily domain APT62_01205 PF00528 Binding-protein-dependent transport system inner membrane component APT62_01210 PF00528 Binding-protein-dependent transport system inner membrane component APT62_01215 PF00005 ABC transporter APT62_01220 PF00005 ABC transporter APT62_01220 PF17755 UvrA DNA-binding domain APT62_01220 PF17760 UvrA interaction domain APT62_01225 PF12320 Type 5 capsule protein repressor C-terminal domain APT62_01225 PF00149 Calcineurin-like phosphoesterase APT62_01230 PF13476 AAA domain APT62_01245 PF04024 PspC domain APT62_01255 PF02603 HPr Serine kinase N terminus APT62_01255 PF07475 HPr Serine kinase C-terminal domain APT62_01260 PF01790 Prolipoprotein diacylglyceryl transferase APT62_01265 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus APT62_01265 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus APT62_01270 PF00483 Nucleotidyl transferase APT62_01275 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT62_01280 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APT62_01280 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APT62_01280 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APT62_01280 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APT62_01285 PF03668 P-loop ATPase protein family APT62_01290 PF01933 Uncharacterised protein family UPF0052 APT62_01295 PF02650 WhiA C-terminal HTH domain APT62_01295 PF10298 WhiA N-terminal LAGLIDADG-like domain APT62_01295 PF14527 WhiA LAGLIDADG-like domain APT62_01305 PF00436 Single-strand binding protein family APT62_01310 PF00486 Transcriptional regulatory protein, C terminal APT62_01310 PF00072 Response regulator receiver domain APT62_01315 PF00672 HAMP domain APT62_01315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT62_01315 PF00512 His Kinase A (phospho-acceptor) domain APT62_01325 PF10672 S-adenosylmethionine-dependent methyltransferase APT62_01325 PF17785 PUA-like domain APT62_01330 PF00107 Zinc-binding dehydrogenase APT62_01330 PF08240 Alcohol dehydrogenase GroES-like domain APT62_01335 PF00756 Putative esterase APT62_01340 PF00005 ABC transporter APT62_01355 PF00149 Calcineurin-like phosphoesterase APT62_01355 PF02872 5'-nucleotidase, C-terminal domain APT62_01365 PF13458 Periplasmic binding protein APT62_01375 PF13458 Periplasmic binding protein APT62_01380 PF02653 Branched-chain amino acid transport system / permease component APT62_01385 PF11862 Domain of unknown function (DUF3382) APT62_01385 PF02653 Branched-chain amino acid transport system / permease component APT62_01390 PF00005 ABC transporter APT62_01390 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT62_01395 PF00005 ABC transporter APT62_01400 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase APT62_01400 PF13457 GW (Gly-Tryp) dipeptide domain APT62_01410 PF13361 UvrD-like helicase C-terminal domain APT62_01410 PF00580 UvrD/REP helicase N-terminal domain APT62_01415 PF00533 BRCA1 C Terminus (BRCT) domain APT62_01415 PF03120 NAD-dependent DNA ligase OB-fold domain APT62_01415 PF12826 Helix-hairpin-helix motif APT62_01415 PF01653 NAD-dependent DNA ligase adenylation domain APT62_01415 PF03119 NAD-dependent DNA ligase C4 zinc finger domain APT62_01420 PF07537 CamS sex pheromone cAM373 precursor APT62_01425 PF02686 Glu-tRNAGln amidotransferase C subunit APT62_01430 PF01425 Amidase APT62_01435 PF02637 GatB domain APT62_01435 PF02934 GatB/GatE catalytic domain APT62_01440 PF00480 ROK family APT62_01445 PF00356 Bacterial regulatory proteins, lacI family APT62_01450 PF00528 Binding-protein-dependent transport system inner membrane component APT62_01455 PF00528 Binding-protein-dependent transport system inner membrane component APT62_01465 PF00251 Glycosyl hydrolases family 32 N-terminal domain APT62_01465 PF08244 Glycosyl hydrolases family 32 C terminal APT62_01470 PF00005 ABC transporter APT62_01470 PF17912 MalK OB fold domain APT62_01470 PF03459 TOBE domain APT62_01480 PF02934 GatB/GatE catalytic domain APT62_01480 PF02637 GatB domain APT62_01485 PF00689 Cation transporting ATPase, C-terminus APT62_01485 PF00690 Cation transporter/ATPase, N-terminus APT62_01500 PF02664 S-Ribosylhomocysteinase (LuxS) APT62_01505 PF01546 Peptidase family M20/M25/M40 APT62_01505 PF07687 Peptidase dimerisation domain APT62_01510 PF01070 FMN-dependent dehydrogenase APT62_01515 PF04172 LrgB-like family APT62_01520 PF03788 LrgA family APT62_01525 PF03466 LysR substrate binding domain APT62_01525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT62_01530 PF05958 tRNA (Uracil-5-)-methyltransferase APT62_01530 PF01938 TRAM domain APT62_01535 PF00392 Bacterial regulatory proteins, gntR family APT62_01535 PF00155 Aminotransferase class I and II APT62_01540 PF01680 SOR/SNZ family APT62_01545 PF04228 Putative neutral zinc metallopeptidase APT62_01560 PF02082 Transcriptional regulator APT62_01565 PF01053 Cys/Met metabolism PLP-dependent enzyme APT62_01575 PF09962 Uncharacterized conserved protein (DUF2196) APT62_01610 PF13610 DDE domain APT62_01625 PF13610 DDE domain APT62_01650 PF13610 DDE domain APT62_01660 PF00300 Histidine phosphatase superfamily (branch 1) APT62_01665 PF13610 DDE domain APT62_01670 PF12833 Helix-turn-helix domain APT62_01690 PF00591 Glycosyl transferase family, a/b domain APT62_01690 PF02885 Glycosyl transferase family, helical bundle domain APT62_01690 PF00117 Glutamine amidotransferase class-I APT62_01705 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase APT62_01710 PF00291 Pyridoxal-phosphate dependent enzyme APT62_01715 PF00290 Tryptophan synthase alpha chain APT62_01745 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APT62_01750 PF07155 ECF-type riboflavin transporter, S component APT62_01755 PF00392 Bacterial regulatory proteins, gntR family APT62_01755 PF07702 UTRA domain APT62_01765 PF02378 Phosphotransferase system, EIIC APT62_01770 PF00232 Glycosyl hydrolase family 1 APT62_01785 PF01479 S4 domain APT62_01785 PF00849 RNA pseudouridylate synthase APT62_01790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT62_01790 PF03466 LysR substrate binding domain APT62_01795 PF12464 Maltose acetyltransferase APT62_01795 PF14602 Hexapeptide repeat of succinyl-transferase APT62_01805 PF03883 Peroxide stress protein YaaA APT62_01820 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APT62_01825 PF00199 Catalase APT62_01825 PF06628 Catalase-related immune-responsive APT62_01845 PF03611 PTS system sugar-specific permease component APT62_01850 PF00455 DeoR C terminal sensor domain APT62_01850 PF08220 DeoR-like helix-turn-helix domain APT62_01855 PF00294 pfkB family carbohydrate kinase APT62_01860 PF02502 Ribose/Galactose Isomerase APT62_01865 PF02502 Ribose/Galactose Isomerase APT62_01870 PF01791 DeoC/LacD family aldolase APT62_01880 PF03812 2-keto-3-deoxygluconate permease APT62_01885 PF14602 Hexapeptide repeat of succinyl-transferase APT62_01885 PF12464 Maltose acetyltransferase APT62_01885 PF00132 Bacterial transferase hexapeptide (six repeats) APT62_01890 PF07308 Protein of unknown function (DUF1456) APT62_01895 PF01938 TRAM domain APT62_01895 PF05958 tRNA (Uracil-5-)-methyltransferase APT62_01910 PF03641 Possible lysine decarboxylase APT62_01920 PF00324 Amino acid permease APT62_01925 PF02574 Homocysteine S-methyltransferase APT62_01935 PF03306 Alpha-acetolactate decarboxylase APT62_01955 PF00300 Histidine phosphatase superfamily (branch 1) APT62_01960 PF00999 Sodium/hydrogen exchanger family APT62_01970 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APT62_01975 PF00296 Luciferase-like monooxygenase APT62_01980 PF01597 Glycine cleavage H-protein APT62_01985 PF01661 Macro domain APT62_01995 PF10437 Bacterial lipoate protein ligase C-terminus APT62_01995 PF03099 Biotin/lipoate A/B protein ligase family APT62_02000 PF01594 AI-2E family transporter APT62_02005 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT62_02005 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APT62_02010 PF00326 Prolyl oligopeptidase family APT62_02030 PF00877 NlpC/P60 family APT62_02035 PF00486 Transcriptional regulatory protein, C terminal APT62_02035 PF00072 Response regulator receiver domain APT62_02040 PF14827 Double sensory domain of two-component sensor kinase APT62_02040 PF13426 PAS domain APT62_02040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT62_02040 PF00672 HAMP domain APT62_02040 PF00512 His Kinase A (phospho-acceptor) domain APT62_02050 PF09648 YycH protein APT62_02060 PF00753 Metallo-beta-lactamase superfamily APT62_02065 PF13180 PDZ domain APT62_02070 PF02254 TrkA-N domain APT62_02070 PF02080 TrkA-C domain APT62_02075 PF02386 Cation transport protein APT62_02080 PF02590 Predicted SPOUT methyltransferase APT62_02085 PF16123 Hydroxyacylglutathione hydrolase C-terminus APT62_02085 PF00753 Metallo-beta-lactamase superfamily APT62_02090 PF02554 Carbon starvation protein CstA APT62_02105 PF01037 Lrp/AsnC ligand binding domain APT62_02110 PF00155 Aminotransferase class I and II APT62_02115 PF00857 Isochorismatase family APT62_02135 PF04298 Putative neutral zinc metallopeptidase APT62_02145 PF03951 Glutamine synthetase, beta-Grasp domain APT62_02145 PF00120 Glutamine synthetase, catalytic domain APT62_02160 PF03806 AbgT putative transporter family APT62_02165 PF02525 Flavodoxin-like fold APT62_02175 PF01479 S4 domain APT62_02175 PF00579 tRNA synthetases class I (W and Y) APT62_02180 PF00877 NlpC/P60 family APT62_02185 PF01588 Putative tRNA binding domain APT62_02185 PF08264 Anticodon-binding domain of tRNA APT62_02185 PF09334 tRNA synthetases class I (M) APT62_02190 PF01026 TatD related DNase APT62_02195 PF13331 Domain of unknown function (DUF4093) APT62_02195 PF01751 Toprim domain APT62_02200 PF00398 Ribosomal RNA adenine dimethylase APT62_02205 PF06257 Biofilm formation stimulator VEG APT62_02210 PF00288 GHMP kinases N terminal domain APT62_02210 PF08544 GHMP kinases C terminal APT62_02215 PF01297 Zinc-uptake complex component A periplasmic APT62_02215 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment APT62_02220 PF00005 ABC transporter APT62_02225 PF00950 ABC 3 transport family APT62_02230 PF09182 Bacterial purine repressor, N-terminal APT62_02230 PF00156 Phosphoribosyl transferase domain APT62_02240 PF00534 Glycosyl transferases group 1 APT62_02240 PF13439 Glycosyltransferase Family 4 APT62_02245 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain APT62_02245 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain APT62_02245 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain APT62_02250 PF13439 Glycosyltransferase Family 4 APT62_02250 PF00534 Glycosyl transferases group 1 APT62_02265 PF00535 Glycosyl transferase family 2 APT62_02280 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain APT62_02280 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain APT62_02280 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain APT62_02285 PF00535 Glycosyl transferase family 2 APT62_02300 PF02073 Thermophilic metalloprotease (M29) APT62_02305 PF00258 Flavodoxin APT62_02315 PF00557 Metallopeptidase family M24 APT62_02320 PF03816 Cell envelope-related transcriptional attenuator domain APT62_02325 PF03816 Cell envelope-related transcriptional attenuator domain APT62_02330 PF00294 pfkB family carbohydrate kinase APT62_02335 PF00478 IMP dehydrogenase / GMP reductase domain APT62_02340 PF01223 DNA/RNA non-specific endonuclease APT62_02350 PF05525 Branched-chain amino acid transport protein APT62_02355 PF02645 Uncharacterised protein, DegV family COG1307 APT62_02360 PF02645 Uncharacterised protein, DegV family COG1307 APT62_02365 PF00293 NUDIX domain APT62_02375 PF02719 Polysaccharide biosynthesis protein APT62_02380 PF02706 Chain length determinant protein APT62_02380 PF13807 G-rich domain on putative tyrosine kinase APT62_02385 PF13614 AAA domain APT62_02395 PF00296 Luciferase-like monooxygenase APT62_02400 PF00710 Asparaginase, N-terminal APT62_02400 PF17763 Glutaminase/Asparaginase C-terminal domain APT62_02405 PF00171 Aldehyde dehydrogenase family APT62_02410 PF00696 Amino acid kinase family APT62_02415 PF02557 D-alanyl-D-alanine carboxypeptidase APT62_02420 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APT62_02420 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APT62_02430 PF02653 Branched-chain amino acid transport system / permease component APT62_02435 PF09383 NIL domain APT62_02435 PF00005 ABC transporter APT62_02450 PF00005 ABC transporter APT62_02455 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) APT62_02455 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 APT62_02475 PF10397 Adenylosuccinate lyase C-terminus APT62_02475 PF00206 Lyase APT62_02485 PF00701 Dihydrodipicolinate synthetase family APT62_02490 PF01168 Alanine racemase, N-terminal domain APT62_02490 PF00842 Alanine racemase, C-terminal domain APT62_02505 PF01321 Creatinase/Prolidase N-terminal domain APT62_02505 PF00557 Metallopeptidase family M24 APT62_02510 PF01070 FMN-dependent dehydrogenase APT62_02515 PF00005 ABC transporter APT62_02520 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT62_02525 PF00528 Binding-protein-dependent transport system inner membrane component APT62_02530 PF00528 Binding-protein-dependent transport system inner membrane component APT62_02540 PF01546 Peptidase family M20/M25/M40 APT62_02545 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) APT62_02550 PF03786 D-mannonate dehydratase (UxuA) APT62_02555 PF00106 short chain dehydrogenase APT62_02565 PF01081 KDPG and KHG aldolase APT62_02570 PF00294 pfkB family carbohydrate kinase APT62_02575 PF02614 Glucuronate isomerase APT62_02580 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal APT62_02580 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal APT62_02585 PF00368 Hydroxymethylglutaryl-coenzyme A reductase APT62_02595 PF09515 Thiamine transporter protein (Thia_YuaJ) APT62_02600 PF01386 Ribosomal L25p family APT62_02600 PF14693 Ribosomal protein TL5, C-terminal domain APT62_02605 PF00291 Pyridoxal-phosphate dependent enzyme APT62_02605 PF14821 Threonine synthase N terminus APT62_02610 PF02441 Flavoprotein APT62_02610 PF04127 DNA / pantothenate metabolism flavoprotein APT62_02615 PF01327 Polypeptide deformylase APT62_02620 PF00676 Dehydrogenase E1 component APT62_02625 PF02779 Transketolase, pyrimidine binding domain APT62_02625 PF02780 Transketolase, C-terminal domain APT62_02630 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APT62_02630 PF00364 Biotin-requiring enzyme APT62_02630 PF02817 e3 binding domain APT62_02635 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APT62_02635 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT62_02640 PF01554 MatE APT62_02645 PF12833 Helix-turn-helix domain APT62_02645 PF02311 AraC-like ligand binding domain APT62_02650 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APT62_02650 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APT62_02655 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APT62_02655 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APT62_02675 PF12833 Helix-turn-helix domain APT62_02675 PF02311 AraC-like ligand binding domain APT62_02680 PF03180 NLPA lipoprotein APT62_02685 PF05256 Uncharacterised protein family (UPF0223) APT62_02690 PF00459 Inositol monophosphatase family APT62_02700 PF01098 Cell cycle protein APT62_02710 PF00367 phosphotransferase system, EIIB APT62_02710 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 APT62_02710 PF02378 Phosphotransferase system, EIIC APT62_02715 PF00682 HMGL-like APT62_02715 PF02436 Conserved carboxylase domain APT62_02715 PF02785 Biotin carboxylase C-terminal domain APT62_02715 PF00289 Biotin carboxylase, N-terminal domain APT62_02715 PF00364 Biotin-requiring enzyme APT62_02715 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APT62_02720 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) APT62_02730 PF00403 Heavy-metal-associated domain APT62_02740 PF00210 Ferritin-like domain APT62_02745 PF13545 Crp-like helix-turn-helix domain APT62_02745 PF00027 Cyclic nucleotide-binding domain APT62_02770 PF01467 Cytidylyltransferase-like APT62_02775 PF10531 SLBB domain APT62_02785 PF06144 DNA polymerase III, delta subunit APT62_02790 PF01649 Ribosomal protein S20 APT62_02795 PF17757 UvrB interaction domain APT62_02795 PF00271 Helicase conserved C-terminal domain APT62_02795 PF12344 Ultra-violet resistance protein B APT62_02795 PF02151 UvrB/uvrC motif APT62_02795 PF04851 Type III restriction enzyme, res subunit APT62_02800 PF01569 PAP2 superfamily APT62_02805 PF00312 Ribosomal protein S15 APT62_02810 PF03725 3' exoribonuclease family, domain 2 APT62_02810 PF01138 3' exoribonuclease family, domain 1 APT62_02810 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain APT62_02810 PF00013 KH domain APT62_02810 PF00575 S1 RNA binding domain APT62_02815 PF02774 Semialdehyde dehydrogenase, dimerisation domain APT62_02815 PF01118 Semialdehyde dehydrogenase, NAD binding domain APT62_02820 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain APT62_02820 PF00753 Metallo-beta-lactamase superfamily APT62_02820 PF17770 Ribonuclease J C-terminal domain APT62_02830 PF13091 PLD-like domain APT62_02830 PF13396 Phospholipase_D-nuclease N-terminal APT62_02840 PF00625 Guanylate kinase APT62_02845 PF01192 RNA polymerase Rpb6 APT62_02850 PF01979 Amidohydrolase family APT62_02855 PF04851 Type III restriction enzyme, res subunit APT62_02855 PF00271 Helicase conserved C-terminal domain APT62_02855 PF17764 3′ DNA-binding domain (3′BD) APT62_02855 PF18074 Primosomal protein N C-terminal domain APT62_02855 PF18319 PriA DNA helicase Cys-rich region (CRR) domain APT62_02860 PF02911 Formyl transferase, C-terminal domain APT62_02860 PF00551 Formyl transferase APT62_02865 PF01189 16S rRNA methyltransferase RsmB/F APT62_02865 PF01029 NusB family APT62_02875 PF03793 PASTA domain APT62_02875 PF00069 Protein kinase domain APT62_02880 PF16745 RsgA N-terminal domain APT62_02880 PF03193 RsgA GTPase APT62_02885 PF00834 Ribulose-phosphate 3 epimerase family APT62_02890 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain APT62_02890 PF04263 Thiamin pyrophosphokinase, catalytic domain APT62_02895 PF00830 Ribosomal L28 family APT62_02900 PF03780 Asp23 family, cell envelope-related function APT62_02905 PF02734 DAK2 domain APT62_02905 PF13684 Dihydroxyacetone kinase family APT62_02910 PF02909 Tetracyclin repressor-like, C-terminal domain APT62_02910 PF00440 Bacterial regulatory proteins, tetR family APT62_02915 PF01593 Flavin containing amine oxidoreductase APT62_02930 PF00005 ABC transporter APT62_02935 PF00253 Ribosomal protein S14p/S29e APT62_02945 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain APT62_02945 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain APT62_02950 PF00288 GHMP kinases N terminal domain APT62_02950 PF08544 GHMP kinases C terminal APT62_02950 PF10509 Galactokinase galactose-binding signature APT62_02960 PF02397 Bacterial sugar transferase APT62_02965 PF01943 Polysaccharide biosynthesis protein APT62_02970 PF00535 Glycosyl transferase family 2 APT62_02975 PF01501 Glycosyl transferase family 8 APT62_02975 PF00535 Glycosyl transferase family 2 APT62_02995 PF00535 Glycosyl transferase family 2 APT62_03000 PF01370 NAD dependent epimerase/dehydratase family APT62_03020 PF02706 Chain length determinant protein APT62_03025 PF13614 AAA domain APT62_03035 PF08485 Polysaccharide biosynthesis protein C-terminal APT62_03035 PF02719 Polysaccharide biosynthesis protein APT62_03040 PF01370 NAD dependent epimerase/dehydratase family APT62_03045 PF02350 UDP-N-acetylglucosamine 2-epimerase APT62_03075 PF16363 GDP-mannose 4,6 dehydratase APT62_03085 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APT62_03090 PF00483 Nucleotidyl transferase APT62_03100 PF08666 SAF domain APT62_03100 PF03102 NeuB family APT62_03105 PF02350 UDP-N-acetylglucosamine 2-epimerase APT62_03120 PF02348 Cytidylyltransferase APT62_03155 PF01883 Iron-sulfur cluster assembly protein APT62_03165 PF02901 Pyruvate formate lyase-like APT62_03165 PF01228 Glycine radical APT62_03170 PF04055 Radical SAM superfamily APT62_03175 PF00171 Aldehyde dehydrogenase family APT62_03175 PF00465 Iron-containing alcohol dehydrogenase APT62_03190 PF03372 Endonuclease/Exonuclease/phosphatase family APT62_03215 PF00296 Luciferase-like monooxygenase APT62_03220 PF00270 DEAD/DEAH box helicase APT62_03220 PF17191 RecG wedge domain APT62_03220 PF00271 Helicase conserved C-terminal domain APT62_03225 PF02504 Fatty acid synthesis protein APT62_03230 PF00550 Phosphopantetheine attachment site APT62_03235 PF00035 Double-stranded RNA binding motif APT62_03235 PF14622 Ribonuclease-III-like APT62_03240 PF06470 SMC proteins Flexible Hinge Domain APT62_03240 PF02463 RecF/RecN/SMC N terminal domain APT62_03250 PF00448 SRP54-type protein, GTPase domain APT62_03250 PF02881 SRP54-type protein, helical bundle domain APT62_03255 PF04525 LURP-one-related APT62_03260 PF00266 Aminotransferase class-V APT62_03265 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT62_03265 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APT62_03270 PF00480 ROK family APT62_03275 PF04073 Aminoacyl-tRNA editing domain APT62_03280 PF00689 Cation transporting ATPase, C-terminus APT62_03280 PF00690 Cation transporter/ATPase, N-terminus APT62_03285 PF04297 Putative helix-turn-helix protein, YlxM / p13 like APT62_03290 PF02881 SRP54-type protein, helical bundle domain APT62_03290 PF00448 SRP54-type protein, GTPase domain APT62_03290 PF02978 Signal peptide binding domain APT62_03295 PF00886 Ribosomal protein S16 APT62_03305 PF05239 PRC-barrel domain APT62_03305 PF01782 RimM N-terminal domain APT62_03310 PF01746 tRNA (Guanine-1)-methyltransferase APT62_03320 PF00224 Pyruvate kinase, barrel domain APT62_03320 PF02887 Pyruvate kinase, alpha/beta domain APT62_03330 PF01245 Ribosomal protein L19 APT62_03335 PF00654 Voltage gated chloride channel APT62_03340 PF18019 HD domain APT62_03340 PF00270 DEAD/DEAH box helicase APT62_03340 PF18395 Cas3 C-terminal domain APT62_03355 PF09344 CT1975-like protein APT62_03360 PF09704 CRISPR-associated protein (Cas_Cas5) APT62_03370 PF01867 CRISPR associated protein Cas1 APT62_03390 PF00171 Aldehyde dehydrogenase family APT62_03395 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APT62_03395 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APT62_03400 PF00248 Aldo/keto reductase family APT62_03405 PF13411 MerR HTH family regulatory protein APT62_03410 PF02378 Phosphotransferase system, EIIC APT62_03415 PF00232 Glycosyl hydrolase family 1 APT62_03420 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APT62_03425 PF08279 HTH domain APT62_03425 PF05043 Mga helix-turn-helix domain APT62_03425 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APT62_03425 PF00874 PRD domain APT62_03430 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APT62_03435 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit APT62_03440 PF00232 Glycosyl hydrolase family 1 APT62_03445 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APT62_03445 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain APT62_03450 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APT62_03450 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APT62_03470 PF01259 SAICAR synthetase APT62_03475 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain APT62_03475 PF02769 AIR synthase related protein, C-terminal domain APT62_03475 PF00586 AIR synthase related protein, N-terminal domain APT62_03480 PF00731 AIR carboxylase APT62_03485 PF00156 Phosphoribosyl transferase domain APT62_03490 PF00586 AIR synthase related protein, N-terminal domain APT62_03490 PF02769 AIR synthase related protein, C-terminal domain APT62_03495 PF00551 Formyl transferase APT62_03500 PF02142 MGS-like domain APT62_03500 PF01808 AICARFT/IMPCHase bienzyme APT62_03505 PF02844 Phosphoribosylglycinamide synthetase, N domain APT62_03505 PF02843 Phosphoribosylglycinamide synthetase, C domain APT62_03505 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain APT62_03515 PF00664 ABC transporter transmembrane region APT62_03515 PF00005 ABC transporter APT62_03520 PF00664 ABC transporter transmembrane region APT62_03520 PF00005 ABC transporter APT62_03525 PF01809 Putative membrane protein insertion efficiency factor APT62_03535 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APT62_03535 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT62_03540 PF00581 Rhodanese-like domain APT62_03545 PF02583 Metal-sensitive transcriptional repressor APT62_03550 PF01638 HxlR-like helix-turn-helix APT62_03555 PF08240 Alcohol dehydrogenase GroES-like domain APT62_03555 PF00107 Zinc-binding dehydrogenase APT62_03560 PF13411 MerR HTH family regulatory protein APT62_03565 PF02129 X-Pro dipeptidyl-peptidase (S15 family) APT62_03575 PF14602 Hexapeptide repeat of succinyl-transferase APT62_03575 PF12464 Maltose acetyltransferase APT62_03575 PF00132 Bacterial transferase hexapeptide (six repeats) APT62_03585 PF11799 impB/mucB/samB family C-terminal domain APT62_03585 PF11798 IMS family HHH motif APT62_03585 PF00817 impB/mucB/samB family APT62_03595 PF00004 ATPase family associated with various cellular activities (AAA) APT62_03595 PF07724 AAA domain (Cdc48 subfamily) APT62_03595 PF17871 AAA lid domain APT62_03595 PF02861 Clp amino terminal domain, pathogenicity island component APT62_03595 PF10431 C-terminal, D2-small domain, of ClpB protein APT62_03605 PF12127 SigmaW regulon antibacterial APT62_03615 PF01261 Xylose isomerase-like TIM barrel APT62_03620 PF01702 Queuine tRNA-ribosyltransferase APT62_03625 PF02699 Preprotein translocase subunit APT62_03640 PF11798 IMS family HHH motif APT62_03640 PF11799 impB/mucB/samB family C-terminal domain APT62_03640 PF00817 impB/mucB/samB family APT62_03645 PF00571 CBS domain APT62_03645 PF00392 Bacterial regulatory proteins, gntR family APT62_03645 PF07085 DRTGG domain APT62_03645 PF03061 Thioesterase superfamily APT62_03650 PF01368 DHH family APT62_03650 PF02272 DHHA1 domain APT62_03655 PF02608 ABC transporter substrate-binding protein PnrA-like APT62_03660 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain APT62_03660 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain APT62_03665 PF00270 DEAD/DEAH box helicase APT62_03665 PF00271 Helicase conserved C-terminal domain APT62_03675 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APT62_03675 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APT62_03685 PF03717 Penicillin-binding Protein dimerisation domain APT62_03685 PF00905 Penicillin binding protein transpeptidase domain APT62_03690 PF00471 Ribosomal protein L33 APT62_03695 PF01694 Rhomboid family APT62_03700 PF01812 5-formyltetrahydrofolate cyclo-ligase family APT62_03705 PF00480 ROK family APT62_03710 PF00581 Rhodanese-like domain APT62_03715 PF08264 Anticodon-binding domain of tRNA APT62_03715 PF00133 tRNA synthetases class I (I, L, M and V) APT62_03715 PF10458 Valyl tRNA synthetase tRNA binding arm APT62_03720 PF02875 Mur ligase family, glutamate ligase domain APT62_03720 PF08245 Mur ligase middle domain APT62_03725 PF13419 Haloacid dehalogenase-like hydrolase APT62_03730 PF01268 Formate--tetrahydrofolate ligase APT62_03735 PF04002 RadC-like JAB domain APT62_03740 PF00313 'Cold-shock' DNA-binding domain APT62_03750 PF06962 Putative rRNA methylase APT62_03755 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase APT62_03755 PF01476 LysM domain APT62_03760 PF00793 DAHP synthetase I family APT62_03760 PF18152 DAHP synthase ferredoxin-like domain APT62_03765 PF01761 3-dehydroquinate synthase APT62_03770 PF18317 Shikimate 5'-dehydrogenase C-terminal domain APT62_03770 PF01488 Shikimate / quinate 5-dehydrogenase APT62_03770 PF08501 Shikimate dehydrogenase substrate binding domain APT62_03775 PF09334 tRNA synthetases class I (M) APT62_03775 PF08264 Anticodon-binding domain of tRNA APT62_03775 PF13603 Leucyl-tRNA synthetase, Domain 2 APT62_03775 PF00133 tRNA synthetases class I (I, L, M and V) APT62_03785 PF01943 Polysaccharide biosynthesis protein APT62_03785 PF14667 Polysaccharide biosynthesis C-terminal domain APT62_03790 PF00849 RNA pseudouridylate synthase APT62_03790 PF01479 S4 domain APT62_03795 PF01546 Peptidase family M20/M25/M40 APT62_03800 PF00588 SpoU rRNA Methylase family APT62_03800 PF08032 RNA 2'-O ribose methyltransferase substrate binding APT62_03810 PF01638 HxlR-like helix-turn-helix APT62_03815 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain APT62_03815 PF01409 tRNA synthetases class II core domain (F) APT62_03820 PF03483 B3/4 domain APT62_03820 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain APT62_03820 PF01588 Putative tRNA binding domain APT62_03820 PF03484 tRNA synthetase B5 domain APT62_03820 PF03147 Ferredoxin-fold anticodon binding domain APT62_03825 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APT62_03825 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APT62_03830 PF01515 Phosphate acetyl/butaryl transferase APT62_03835 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE APT62_03850 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain APT62_03850 PF01565 FAD binding domain APT62_03855 PF00005 ABC transporter APT62_03855 PF12558 ATP-binding cassette cobalt transporter APT62_03860 PF03591 AzlC protein APT62_03870 PF07883 Cupin domain APT62_03870 PF05899 Protein of unknown function (DUF861) APT62_03875 PF02615 Malate/L-lactate dehydrogenase APT62_03880 PF13556 PucR C-terminal helix-turn-helix domain APT62_03880 PF07905 Purine catabolism regulatory protein-like family APT62_03880 PF17853 GGDEF-like domain APT62_03885 PF00266 Aminotransferase class-V APT62_03890 PF01546 Peptidase family M20/M25/M40 APT62_03895 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin APT62_03900 PF01979 Amidohydrolase family APT62_03905 PF00375 Sodium:dicarboxylate symporter family APT62_03910 PF00375 Sodium:dicarboxylate symporter family APT62_03925 PF06545 Protein of unknown function (DUF1116) APT62_03930 PF11392 Protein of unknown function (DUF2877) APT62_03935 PF00696 Amino acid kinase family APT62_03940 PF01070 FMN-dependent dehydrogenase APT62_03945 PF08544 GHMP kinases C terminal APT62_03945 PF00288 GHMP kinases N terminal domain APT62_03955 PF08544 GHMP kinases C terminal APT62_03955 PF00288 GHMP kinases N terminal domain APT62_03960 PF00958 GMP synthase C terminal domain APT62_03960 PF02540 NAD synthase APT62_03960 PF00117 Glutamine amidotransferase class-I APT62_03970 PF13673 Acetyltransferase (GNAT) domain APT62_03975 PF13416 Bacterial extracellular solute-binding protein APT62_03980 PF00528 Binding-protein-dependent transport system inner membrane component APT62_03985 PF00528 Binding-protein-dependent transport system inner membrane component APT62_03990 PF00005 ABC transporter APT62_03990 PF03459 TOBE domain APT62_03990 PF17912 MalK OB fold domain APT62_03995 PF03009 Glycerophosphoryl diester phosphodiesterase family APT62_04000 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APT62_04000 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APT62_04005 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APT62_04005 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APT62_04010 PF01418 Helix-turn-helix domain, rpiR family APT62_04010 PF01380 SIS domain APT62_04015 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APT62_04015 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APT62_04035 PF04073 Aminoacyl-tRNA editing domain APT62_04040 PF00528 Binding-protein-dependent transport system inner membrane component APT62_04045 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT62_04045 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APT62_04055 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 APT62_04060 PF07733 Bacterial DNA polymerase III alpha NTPase domain APT62_04060 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APT62_04060 PF14579 Helix-hairpin-helix motif APT62_04060 PF02811 PHP domain APT62_04060 PF11490 DNA polymerase III polC-type N-terminus II APT62_04060 PF00929 Exonuclease APT62_04070 PF01980 tRNA-methyltransferase O APT62_04070 PF18389 TrmO C-terminal domain APT62_04075 PF01557 Fumarylacetoacetate (FAA) hydrolase family APT62_04105 PF00005 ABC transporter APT62_04125 PF01713 Smr domain APT62_04125 PF00488 MutS domain V APT62_04130 PF00085 Thioredoxin APT62_04135 PF02142 MGS-like domain APT62_04140 PF01177 Asp/Glu/Hydantoin racemase APT62_04145 PF01725 Ham1 family APT62_04150 PF12850 Calcineurin-like phosphoesterase superfamily domain APT62_04155 PF00924 Mechanosensitive ion channel APT62_04170 PF00356 Bacterial regulatory proteins, lacI family APT62_04175 PF09587 Bacterial capsule synthesis protein PGA_cap APT62_04185 PF05167 Uncharacterised ACR (DUF711) APT62_04190 PF00248 Aldo/keto reductase family APT62_04195 PF01063 Amino-transferase class IV APT62_04205 PF00912 Transglycosylase APT62_04205 PF00905 Penicillin binding protein transpeptidase domain APT62_04210 PF00781 Diacylglycerol kinase catalytic domain APT62_04215 PF01709 Transcriptional regulator APT62_04220 PF01813 ATP synthase subunit D APT62_04225 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APT62_04225 PF02874 ATP synthase alpha/beta family, beta-barrel domain APT62_04230 PF02874 ATP synthase alpha/beta family, beta-barrel domain APT62_04230 PF16886 ATPsynthase alpha/beta subunit N-term extension APT62_04230 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APT62_04250 PF01496 V-type ATPase 116kDa subunit family APT62_04265 PF00437 Type II/IV secretion system protein APT62_04270 PF00482 Type II secretion system (T2SS), protein F APT62_04275 PF07963 Prokaryotic N-terminal methylation motif APT62_04300 PF01321 Creatinase/Prolidase N-terminal domain APT62_04300 PF00557 Metallopeptidase family M24 APT62_04305 PF01132 Elongation factor P (EF-P) OB domain APT62_04305 PF08207 Elongation factor P (EF-P) KOW-like domain APT62_04305 PF09285 Elongation factor P, C-terminal APT62_04315 PF01029 NusB family APT62_04320 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain APT62_04320 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain APT62_04325 PF13742 OB-fold nucleic acid binding domain APT62_04325 PF02601 Exonuclease VII, large subunit APT62_04330 PF02609 Exonuclease VII small subunit APT62_04335 PF00348 Polyprenyl synthetase APT62_04340 PF01479 S4 domain APT62_04340 PF01728 FtsJ-like methyltransferase APT62_04345 PF13476 AAA domain APT62_04370 PF03631 Virulence factor BrkB APT62_04375 PF01098 Cell cycle protein APT62_04380 PF01597 Glycine cleavage H-protein APT62_04390 PF00005 ABC transporter APT62_04390 PF12704 MacB-like periplasmic core domain APT62_04390 PF02687 FtsX-like permease family APT62_04395 PF03180 NLPA lipoprotein APT62_04400 PF07722 Peptidase C26 APT62_04410 PF00750 tRNA synthetases class I (R) APT62_04410 PF03485 Arginyl tRNA synthetase N terminal domain APT62_04410 PF05746 DALR anticodon binding domain APT62_04415 PF00860 Permease family APT62_04430 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APT62_04430 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT62_04445 PF00689 Cation transporting ATPase, C-terminus APT62_04445 PF00690 Cation transporter/ATPase, N-terminus APT62_04450 PF17674 HHH domain APT62_04450 PF00575 S1 RNA binding domain APT62_04450 PF16921 Tex protein YqgF-like domain APT62_04450 PF09371 Tex-like protein N-terminal domain APT62_04455 PF13458 Periplasmic binding protein APT62_04460 PF00571 CBS domain APT62_04480 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT62_04490 PF00128 Alpha amylase, catalytic domain APT62_04490 PF02806 Alpha amylase, C-terminal all-beta domain APT62_04490 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APT62_04495 PF00483 Nucleotidyl transferase APT62_04500 PF00483 Nucleotidyl transferase APT62_04505 PF08323 Starch synthase catalytic domain APT62_04505 PF00534 Glycosyl transferases group 1 APT62_04510 PF13840 ACT domain APT62_04510 PF00696 Amino acid kinase family APT62_04515 PF02673 Bacitracin resistance protein BacA APT62_04520 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 APT62_04520 PF00367 phosphotransferase system, EIIB APT62_04520 PF02378 Phosphotransferase system, EIIC APT62_04525 PF02608 ABC transporter substrate-binding protein PnrA-like APT62_04545 PF01613 Flavin reductase like domain APT62_04550 PF10282 Lactonase, 7-bladed beta-propeller APT62_04555 PF01594 AI-2E family transporter APT62_04560 PF00664 ABC transporter transmembrane region APT62_04560 PF00005 ABC transporter APT62_04565 PF00664 ABC transporter transmembrane region APT62_04565 PF00005 ABC transporter APT62_04570 PF02586 SOS response associated peptidase (SRAP) APT62_04575 PF07685 CobB/CobQ-like glutamine amidotransferase domain APT62_04580 PF08353 Domain of unknown function (DUF1727) APT62_04580 PF08245 Mur ligase middle domain APT62_04585 PF00265 Thymidine kinase APT62_04590 PF00472 RF-1 domain APT62_04590 PF03462 PCRF domain APT62_04595 PF05175 Methyltransferase small domain APT62_04595 PF17827 PrmC N-terminal domain APT62_04600 PF01300 Telomere recombination APT62_04600 PF03481 Putative GTP-binding controlling metal-binding APT62_04605 PF00464 Serine hydroxymethyltransferase APT62_04615 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APT62_04620 PF16198 tRNA pseudouridylate synthase B C-terminal domain APT62_04620 PF01509 TruB family pseudouridylate synthase (N terminal domain) APT62_04625 PF01687 Riboflavin kinase APT62_04625 PF06574 FAD synthetase APT62_04630 PF01546 Peptidase family M20/M25/M40 APT62_04630 PF07687 Peptidase dimerisation domain APT62_04635 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding APT62_04635 PF01628 HrcA protein C terminal domain APT62_04640 PF01025 GrpE APT62_04645 PF00012 Hsp70 protein APT62_04650 PF00684 DnaJ central domain APT62_04650 PF01556 DnaJ C terminal domain APT62_04650 PF00226 DnaJ domain APT62_04660 PF00009 Elongation factor Tu GTP binding domain APT62_04660 PF00679 Elongation factor G C-terminus APT62_04660 PF03144 Elongation factor Tu domain 2 APT62_04660 PF06421 GTP-binding protein LepA C-terminus APT62_04670 PF00107 Zinc-binding dehydrogenase APT62_04670 PF08240 Alcohol dehydrogenase GroES-like domain APT62_04685 PF06480 FtsH Extracellular APT62_04685 PF00004 ATPase family associated with various cellular activities (AAA) APT62_04685 PF01434 Peptidase family M41 APT62_04685 PF17862 AAA+ lid domain APT62_04695 PF00005 ABC transporter APT62_04695 PF16326 ABC transporter C-terminal domain APT62_04695 PF12848 ABC transporter APT62_04700 PF00303 Thymidylate synthase APT62_04705 PF00186 Dihydrofolate reductase APT62_04715 PF06855 YozE SAM-like fold APT62_04720 PF03572 Peptidase family S41 APT62_04720 PF01471 Putative peptidoglycan binding domain APT62_04720 PF17820 PDZ domain APT62_04725 PF10502 Signal peptidase, peptidase S26 APT62_04730 PF01926 50S ribosome-binding GTPase APT62_04735 PF01351 Ribonuclease HII APT62_04740 PF17782 DprA winged helix domain APT62_04740 PF02481 DNA recombination-mediator protein A APT62_04745 PF01396 Topoisomerase DNA binding C4 zinc finger APT62_04745 PF01131 DNA topoisomerase APT62_04745 PF01751 Toprim domain APT62_04750 PF02899 Phage integrase, N-terminal SAM-like domain APT62_04750 PF00589 Phage integrase family APT62_04755 PF02660 Glycerol-3-phosphate acyltransferase APT62_04760 PF00986 DNA gyrase B subunit, carboxyl terminus APT62_04760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT62_04760 PF01751 Toprim domain APT62_04760 PF00204 DNA gyrase B APT62_04765 PF03989 DNA gyrase C-terminal domain, beta-propeller APT62_04765 PF00521 DNA gyrase/topoisomerase IV, subunit A APT62_04775 PF00248 Aldo/keto reductase family APT62_04780 PF01368 DHH family APT62_04780 PF02833 DHHA2 domain APT62_04785 PF02080 TrkA-C domain APT62_04785 PF02254 TrkA-N domain APT62_04790 PF02386 Cation transport protein APT62_04795 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APT62_04795 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APT62_04800 PF16901 C-terminal domain of alpha-glycerophosphate oxidase APT62_04800 PF01266 FAD dependent oxidoreductase APT62_04805 PF00230 Major intrinsic protein APT62_04815 PF00589 Phage integrase family APT62_04815 PF02899 Phage integrase, N-terminal SAM-like domain APT62_04825 PF00375 Sodium:dicarboxylate symporter family APT62_04850 PF00291 Pyridoxal-phosphate dependent enzyme APT62_04865 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain APT62_04865 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain APT62_04870 PF00288 GHMP kinases N terminal domain APT62_04870 PF10509 Galactokinase galactose-binding signature APT62_04870 PF08544 GHMP kinases C terminal APT62_04875 PF00356 Bacterial regulatory proteins, lacI family APT62_04880 PF00128 Alpha amylase, catalytic domain APT62_04885 PF03459 TOBE domain APT62_04885 PF00005 ABC transporter APT62_04885 PF17912 MalK OB fold domain APT62_04890 PF00128 Alpha amylase, catalytic domain APT62_04895 PF00528 Binding-protein-dependent transport system inner membrane component APT62_04900 PF00528 Binding-protein-dependent transport system inner membrane component APT62_04905 PF01547 Bacterial extracellular solute-binding protein APT62_04910 PF16874 Glycosyl hydrolase family 36 C-terminal domain APT62_04910 PF16875 Glycosyl hydrolase family 36 N-terminal domain APT62_04915 PF12833 Helix-turn-helix domain APT62_04915 PF02311 AraC-like ligand binding domain APT62_04925 PF00005 ABC transporter APT62_04930 PF00528 Binding-protein-dependent transport system inner membrane component APT62_04940 PF00206 Lyase APT62_04940 PF10397 Adenylosuccinate lyase C-terminus APT62_04945 PF03972 MmgE/PrpD family APT62_04950 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT62_04955 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT62_04965 PF00664 ABC transporter transmembrane region APT62_04965 PF00005 ABC transporter APT62_04970 PF00664 ABC transporter transmembrane region APT62_04970 PF00005 ABC transporter APT62_04975 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APT62_04975 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APT62_04980 PF00294 pfkB family carbohydrate kinase APT62_04985 PF00455 DeoR C terminal sensor domain APT62_04985 PF08220 DeoR-like helix-turn-helix domain APT62_04990 PF00293 NUDIX domain APT62_04990 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain APT62_04990 PF09297 NADH pyrophosphatase zinc ribbon domain APT62_04995 PF01256 Carbohydrate kinase APT62_05000 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase APT62_05000 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain APT62_05005 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT62_05015 PF00005 ABC transporter APT62_05020 PF02653 Branched-chain amino acid transport system / permease component APT62_05040 PF01726 LexA DNA binding domain APT62_05040 PF00717 Peptidase S24-like APT62_05045 PF00156 Phosphoribosyl transferase domain APT62_05050 PF17768 RecJ OB domain APT62_05050 PF01368 DHH family APT62_05050 PF02272 DHHA1 domain APT62_05050 PF10141 Single-strand DNA-specific exonuclease, C terminal domain APT62_05055 PF00106 short chain dehydrogenase APT62_05060 PF00753 Metallo-beta-lactamase superfamily APT62_05065 PF01018 GTP1/OBG APT62_05065 PF09269 Domain of unknown function (DUF1967) APT62_05065 PF01926 50S ribosome-binding GTPase APT62_05070 PF02092 Glycyl-tRNA synthetase beta subunit APT62_05075 PF02091 Glycyl-tRNA synthetase alpha subunit APT62_05080 PF11967 Recombination protein O N terminal APT62_05080 PF02565 Recombination protein O C terminal APT62_05085 PF07650 KH domain APT62_05085 PF01926 50S ribosome-binding GTPase APT62_05095 PF02130 Uncharacterized protein family UPF0054 APT62_05100 PF02562 PhoH-like protein APT62_05105 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT62_05120 PF09424 Yqey-like protein APT62_05125 PF01165 Ribosomal protein S21 APT62_05130 PF01475 Ferric uptake regulator family APT62_05135 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT62_05140 PF03618 Kinase/pyrophosphorylase APT62_05145 PF01180 Dihydroorotate dehydrogenase APT62_05150 PF01979 Amidohydrolase family APT62_05155 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APT62_05155 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APT62_05160 PF00156 Phosphoribosyl transferase domain APT62_05170 PF01343 Peptidase family S49 APT62_05175 PF00152 tRNA synthetases class II (D, K and N) APT62_05175 PF02938 GAD domain APT62_05175 PF01336 OB-fold nucleic acid binding domain APT62_05180 PF13393 Histidyl-tRNA synthetase APT62_05180 PF03129 Anticodon binding domain APT62_05185 PF08239 Bacterial SH3 domain APT62_05185 PF01520 N-acetylmuramoyl-L-alanine amidase APT62_05190 PF02580 D-Tyr-tRNA(Tyr) deacylase APT62_05195 PF02824 TGS domain APT62_05195 PF13291 ACT domain APT62_05195 PF04607 Region found in RelA / SpoT proteins APT62_05200 PF04452 RNA methyltransferase APT62_05215 PF05103 DivIVA protein APT62_05225 PF01170 Putative RNA methylase family UPF0020 APT62_05225 PF02926 THUMP domain APT62_05240 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit APT62_05245 PF01039 Carboxyl transferase domain APT62_05250 PF00289 Biotin carboxylase, N-terminal domain APT62_05250 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APT62_05250 PF02785 Biotin carboxylase C-terminal domain APT62_05255 PF07977 FabA-like domain APT62_05260 PF00364 Biotin-requiring enzyme APT62_05265 PF02801 Beta-ketoacyl synthase, C-terminal domain APT62_05265 PF00109 Beta-ketoacyl synthase, N-terminal domain APT62_05275 PF00698 Acyl transferase domain APT62_05280 PF03060 Nitronate monooxygenase APT62_05285 PF00550 Phosphopantetheine attachment site APT62_05300 PF01156 Inosine-uridine preferring nucleoside hydrolase APT62_05315 PF07969 Amidohydrolase family APT62_05335 PF00300 Histidine phosphatase superfamily (branch 1) APT62_05340 PF06874 Firmicute fructose-1,6-bisphosphatase APT62_05345 PF01668 SmpB protein APT62_05350 PF08206 Ribonuclease B OB domain APT62_05350 PF00773 RNB domain APT62_05350 PF17876 Cold shock domain APT62_05350 PF00575 S1 RNA binding domain APT62_05365 PF00005 ABC transporter APT62_05365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT62_05370 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT62_05370 PF00005 ABC transporter APT62_05375 PF00528 Binding-protein-dependent transport system inner membrane component APT62_05375 PF12911 N-terminal TM domain of oligopeptide transport permease C APT62_05380 PF00528 Binding-protein-dependent transport system inner membrane component APT62_05390 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT62_05395 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT62_05400 PF03952 Enolase, N-terminal domain APT62_05400 PF00113 Enolase, C-terminal TIM barrel domain APT62_05405 PF06415 BPG-independent PGAM N-terminus (iPGM_N) APT62_05405 PF01676 Metalloenzyme superfamily APT62_05410 PF00121 Triosephosphate isomerase APT62_05415 PF00162 Phosphoglycerate kinase APT62_05420 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain APT62_05420 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APT62_05425 PF04198 Putative sugar-binding domain APT62_05435 PF00574 Clp protease APT62_05445 PF06993 Protein of unknown function (DUF1304) APT62_05455 PF02033 Ribosome-binding factor A APT62_05460 PF04760 Translation initiation factor IF-2, N-terminal region APT62_05460 PF11987 Translation-initiation factor 2 APT62_05460 PF00009 Elongation factor Tu GTP binding domain APT62_05470 PF04296 Protein of unknown function (DUF448) APT62_05475 PF13184 NusA-like KH domain APT62_05475 PF08529 NusA N-terminal domain APT62_05475 PF00575 S1 RNA binding domain APT62_05480 PF02576 RimP N-terminal domain APT62_05480 PF17384 RimP C-terminal SH3 domain APT62_05490 PF07556 Protein of unknown function (DUF1538) APT62_05495 PF00929 Exonuclease APT62_05495 PF02811 PHP domain APT62_05495 PF14579 Helix-hairpin-helix motif APT62_05495 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APT62_05495 PF07733 Bacterial DNA polymerase III alpha NTPase domain APT62_05495 PF11490 DNA polymerase III polC-type N-terminus II APT62_05495 PF14480 DNA polymerase III polC-type N-terminus I APT62_05500 PF13180 PDZ domain APT62_05500 PF02163 Peptidase family M50 APT62_05510 PF01255 Putative undecaprenyl diphosphate synthase APT62_05530 PF00486 Transcriptional regulatory protein, C terminal APT62_05530 PF00072 Response regulator receiver domain APT62_05535 PF00512 His Kinase A (phospho-acceptor) domain APT62_05535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT62_05540 PF01765 Ribosome recycling factor APT62_05545 PF00696 Amino acid kinase family APT62_05550 PF00889 Elongation factor TS APT62_05555 PF00318 Ribosomal protein S2 APT62_05560 PF00271 Helicase conserved C-terminal domain APT62_05560 PF00176 SNF2 family N-terminal domain APT62_05560 PF04434 SWIM zinc finger APT62_05565 PF01594 AI-2E family transporter APT62_05570 PF01553 Acyltransferase APT62_05575 PF00664 ABC transporter transmembrane region APT62_05575 PF00005 ABC transporter APT62_05580 PF00664 ABC transporter transmembrane region APT62_05580 PF00005 ABC transporter APT62_05585 PF03672 Uncharacterised protein family (UPF0154) APT62_05590 PF01479 S4 domain APT62_05590 PF00849 RNA pseudouridylate synthase APT62_05595 PF01252 Signal peptidase (SPase) II APT62_05600 PF01693 Caulimovirus viroplasmin APT62_05610 PF12705 PD-(D/E)XK nuclease superfamily APT62_05610 PF00580 UvrD/REP helicase N-terminal domain APT62_05610 PF13361 UvrD-like helicase C-terminal domain APT62_05615 PF12705 PD-(D/E)XK nuclease superfamily APT62_05620 PF01546 Peptidase family M20/M25/M40 APT62_05620 PF07687 Peptidase dimerisation domain APT62_05625 PF01784 NIF3 (NGG1p interacting factor 3) APT62_05630 PF04816 tRNA (adenine(22)-N(1))-methyltransferase APT62_05650 PF12848 ABC transporter APT62_05650 PF00005 ABC transporter APT62_05655 PF00202 Aminotransferase class-III APT62_05660 PF01960 ArgJ family APT62_05665 PF01118 Semialdehyde dehydrogenase, NAD binding domain APT62_05665 PF02774 Semialdehyde dehydrogenase, dimerisation domain APT62_05670 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APT62_05670 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APT62_05675 PF00696 Amino acid kinase family APT62_05680 PF02142 MGS-like domain APT62_05680 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APT62_05680 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain APT62_05695 PF04539 Sigma-70 region 3 APT62_05695 PF03979 Sigma-70 factor, region 1.1 APT62_05695 PF00140 Sigma-70 factor, region 1.2 APT62_05695 PF04542 Sigma-70 region 2 APT62_05695 PF04545 Sigma-70, region 4 APT62_05700 PF01807 CHC2 zinc finger APT62_05700 PF10410 DnaB-helicase binding domain of primase APT62_05700 PF08275 DNA primase catalytic core, N-terminal domain APT62_05705 PF01926 50S ribosome-binding GTPase APT62_05710 PF10431 C-terminal, D2-small domain, of ClpB protein APT62_05710 PF06689 ClpX C4-type zinc finger APT62_05710 PF07724 AAA domain (Cdc48 subfamily) APT62_05715 PF07662 Na+ dependent nucleoside transporter C-terminus APT62_05715 PF07670 Nucleoside recognition APT62_05715 PF01773 Na+ dependent nucleoside transporter N-terminus APT62_05720 PF01156 Inosine-uridine preferring nucleoside hydrolase APT62_05725 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APT62_05725 PF05698 Bacterial trigger factor protein (TF) C-terminus APT62_05725 PF05697 Bacterial trigger factor protein (TF) APT62_05730 PF03838 Recombination protein U APT62_05735 PF00912 Transglycosylase APT62_05735 PF00905 Penicillin binding protein transpeptidase domain APT62_05740 PF12146 Serine aminopeptidase, S33 APT62_05745 PF00268 Ribonucleotide reductase, small chain APT62_05750 PF08343 Ribonucleotide reductase N-terminal APT62_05750 PF00317 Ribonucleotide reductase, all-alpha domain APT62_05750 PF02867 Ribonucleotide reductase, barrel domain APT62_05755 PF07972 NrdI Flavodoxin like APT62_05760 PF03965 Penicillinase repressor APT62_05765 PF03167 Uracil DNA glycosylase superfamily APT62_05775 PF02541 Ppx/GppA phosphatase family APT62_05780 PF17941 Polyphosphate kinase C-terminal domain 1 APT62_05780 PF13090 Polyphosphate kinase C-terminal domain 2 APT62_05780 PF02503 Polyphosphate kinase middle domain APT62_05780 PF13089 Polyphosphate kinase N-terminal domain APT62_05785 PF12848 ABC transporter APT62_05785 PF00005 ABC transporter APT62_05790 PF00005 ABC transporter APT62_05790 PF00664 ABC transporter transmembrane region APT62_05795 PF00005 ABC transporter APT62_05795 PF00664 ABC transporter transmembrane region APT62_05800 PF01594 AI-2E family transporter APT62_05805 PF00485 Phosphoribulokinase / Uridine kinase family APT62_05815 PF03649 Uncharacterised protein family (UPF0014) APT62_05820 PF00005 ABC transporter APT62_05835 PF03109 ABC1 family APT62_05840 PF02645 Uncharacterised protein, DegV family COG1307 APT62_05855 PF03006 Haemolysin-III related APT62_05860 PF11728 Putative aromatic acid exporter C-terminal domain APT62_05860 PF06081 Aromatic acid exporter family member 1 APT62_05870 PF00753 Metallo-beta-lactamase superfamily APT62_05870 PF17770 Ribonuclease J C-terminal domain APT62_05870 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain APT62_05875 PF00196 Bacterial regulatory proteins, luxR family APT62_05875 PF00072 Response regulator receiver domain APT62_05880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT62_05880 PF07730 Histidine kinase APT62_05890 PF03449 Transcription elongation factor, N-terminal APT62_05890 PF01272 Transcription elongation factor, GreA/GreB, C-term APT62_05895 PF00485 Phosphoribulokinase / Uridine kinase family APT62_05900 PF02618 YceG-like family APT62_05910 PF02082 Transcriptional regulator APT62_05915 PF06949 Protein of unknown function (DUF1292) APT62_05920 PF03652 Holliday junction resolvase APT62_05925 PF06135 IreB regulatory phosphoprotein APT62_05930 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APT62_05930 PF01411 tRNA synthetases class II (A) APT62_05930 PF02272 DHHA1 domain APT62_05935 PF13538 UvrD-like helicase C-terminal domain APT62_05935 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain APT62_05935 PF14490 Helix-hairpin-helix containing domain APT62_05950 PF00266 Aminotransferase class-V APT62_05955 PF02655 ATP-grasp domain APT62_05955 PF04262 Glutamate-cysteine ligase APT62_05955 PF18419 ATP-grasp-like domain APT62_05960 PF05496 Holliday junction DNA helicase RuvB P-loop domain APT62_05960 PF12002 MgsA AAA+ ATPase C terminal APT62_05960 PF16193 AAA C-terminal domain APT62_05970 PF00923 Transaldolase/Fructose-6-phosphate aldolase APT62_05975 PF13419 Haloacid dehalogenase-like hydrolase APT62_05985 PF07663 Sorbitol phosphotransferase enzyme II C-terminus APT62_05985 PF03612 Sorbitol phosphotransferase enzyme II N-terminus APT62_05990 PF03608 PTS system enzyme II sorbitol-specific factor APT62_06000 PF08279 HTH domain APT62_06000 PF00874 PRD domain APT62_06000 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APT62_06000 PF05043 Mga helix-turn-helix domain APT62_06005 PF00106 short chain dehydrogenase APT62_06010 PF00582 Universal stress protein family APT62_06025 PF01418 Helix-turn-helix domain, rpiR family APT62_06025 PF01380 SIS domain APT62_06030 PF00367 phosphotransferase system, EIIB APT62_06030 PF02378 Phosphotransferase system, EIIC APT62_06035 PF01380 SIS domain APT62_06045 PF00871 Acetokinase family APT62_06055 PF01016 Ribosomal L27 protein APT62_06060 PF04327 Cysteine protease Prp APT62_06065 PF00829 Ribosomal prokaryotic L21 protein APT62_06070 PF00005 ABC transporter APT62_06075 PF00528 Binding-protein-dependent transport system inner membrane component APT62_06085 PF04085 rod shape-determining protein MreC APT62_06220 PF00342 Phosphoglucose isomerase APT62_06225 PF00575 S1 RNA binding domain APT62_06230 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APT62_06235 PF02681 Divergent PAP2 family APT62_06240 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT62_06250 PF13344 Haloacid dehalogenase-like hydrolase APT62_06255 PF06265 Protein of unknown function (DUF1027) APT62_06260 PF02872 5'-nucleotidase, C-terminal domain APT62_06265 PF01047 MarR family APT62_06270 PF00633 Helix-hairpin-helix motif APT62_06270 PF00730 HhH-GPD superfamily base excision DNA repair protein APT62_06270 PF10576 Iron-sulfur binding domain of endonuclease III APT62_06280 PF00155 Aminotransferase class I and II APT62_06290 PF13307 Helicase C-terminal domain APT62_06290 PF00929 Exonuclease APT62_06290 PF04851 Type III restriction enzyme, res subunit APT62_06295 PF13735 tRNA nucleotidyltransferase domain 2 putative APT62_06295 PF12627 Probable RNA and SrmB- binding site of polymerase A APT62_06295 PF01743 Poly A polymerase head domain APT62_06300 PF05173 Dihydrodipicolinate reductase, C-terminus APT62_06300 PF01113 Dihydrodipicolinate reductase, N-terminus APT62_06310 PF02424 ApbE family APT62_06315 PF00356 Bacterial regulatory proteins, lacI family APT62_06320 PF00251 Glycosyl hydrolases family 32 N-terminal domain APT62_06320 PF08244 Glycosyl hydrolases family 32 C terminal APT62_06325 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 APT62_06325 PF02378 Phosphotransferase system, EIIC APT62_06325 PF00367 phosphotransferase system, EIIB APT62_06330 PF00216 Bacterial DNA-binding protein APT62_06335 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal APT62_06335 PF01926 50S ribosome-binding GTPase APT62_06340 PF00575 S1 RNA binding domain APT62_06345 PF02224 Cytidylate kinase APT62_06355 PF00271 Helicase conserved C-terminal domain APT62_06355 PF00270 DEAD/DEAH box helicase APT62_06365 PF12822 ECF transporter, substrate-specific component APT62_06370 PF00849 RNA pseudouridylate synthase APT62_06370 PF01479 S4 domain APT62_06375 PF04079 Segregation and condensation complex subunit ScpB APT62_06380 PF02616 Segregation and condensation protein ScpA APT62_06385 PF00583 Acetyltransferase (GNAT) family APT62_06395 PF13732 Domain of unknown function (DUF4162) APT62_06395 PF00005 ABC transporter APT62_06400 PF02899 Phage integrase, N-terminal SAM-like domain APT62_06400 PF00589 Phage integrase family APT62_06405 PF13509 S1 domain APT62_06405 PF17783 CvfB-like winged helix domain APT62_06410 PF01202 Shikimate kinase APT62_06415 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APT62_06420 PF01264 Chorismate synthase APT62_06425 PF00224 Pyruvate kinase, barrel domain APT62_06425 PF00391 PEP-utilising enzyme, mobile domain APT62_06425 PF02887 Pyruvate kinase, alpha/beta domain APT62_06430 PF00365 Phosphofructokinase APT62_06435 PF14579 Helix-hairpin-helix motif APT62_06435 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APT62_06435 PF07733 Bacterial DNA polymerase III alpha NTPase domain APT62_06435 PF02811 PHP domain APT62_06435 PF01336 OB-fold nucleic acid binding domain APT62_06440 PF02547 Queuosine biosynthesis protein APT62_06445 PF05496 Holliday junction DNA helicase RuvB P-loop domain APT62_06445 PF17864 RuvB AAA lid domain APT62_06445 PF05491 RuvB C-terminal winged helix domain APT62_06450 PF07499 RuvA, C-terminal domain APT62_06450 PF01330 RuvA N terminal domain APT62_06455 PF01641 SelR domain APT62_06460 PF01119 DNA mismatch repair protein, C-terminal domain APT62_06460 PF08676 MutL C terminal dimerisation domain APT62_06465 PF05188 MutS domain II APT62_06465 PF05190 MutS family domain IV APT62_06465 PF05192 MutS domain III APT62_06465 PF00488 MutS domain V APT62_06465 PF01624 MutS domain I APT62_06470 PF01566 Natural resistance-associated macrophage protein APT62_06485 PF00232 Glycosyl hydrolase family 1 APT62_06490 PF02378 Phosphotransferase system, EIIC APT62_06490 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 APT62_06490 PF00367 phosphotransferase system, EIIB APT62_06515 PF12072 Domain of unknown function (DUF3552) APT62_06515 PF00013 KH domain APT62_06515 PF01966 HD domain APT62_06520 PF00154 recA bacterial DNA recombination protein APT62_06525 PF18146 Damage-inducible protein CinA KH domain APT62_06525 PF02464 Competence-damaged protein APT62_06525 PF00994 Probable molybdopterin binding domain APT62_06530 PF01066 CDP-alcohol phosphatidyltransferase APT62_06535 PF09397 Ftsk gamma domain APT62_06535 PF17854 FtsK alpha domain APT62_06535 PF01580 FtsK/SpoIIIE family APT62_06545 PF00708 Acylphosphatase APT62_06550 PF02096 60Kd inner membrane protein APT62_06555 PF01717 Cobalamin-independent synthase, Catalytic domain APT62_06560 PF00205 Thiamine pyrophosphate enzyme, central domain APT62_06560 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT62_06560 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT62_06565 PF12464 Maltose acetyltransferase APT62_06565 PF14602 Hexapeptide repeat of succinyl-transferase APT62_06570 PF00512 His Kinase A (phospho-acceptor) domain APT62_06570 PF18719 ArlS sensor domain APT62_06570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT62_06575 PF00486 Transcriptional regulatory protein, C terminal APT62_06575 PF00072 Response regulator receiver domain APT62_06580 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APT62_06580 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain APT62_06590 PF08534 Redoxin APT62_06595 PF02568 Thiamine biosynthesis protein (ThiI) APT62_06595 PF02926 THUMP domain APT62_06600 PF00266 Aminotransferase class-V APT62_06605 PF06160 Septation ring formation regulator, EzrA APT62_06610 PF00163 Ribosomal protein S4/S9 N-terminal domain APT62_06610 PF01479 S4 domain APT62_06615 PF01048 Phosphorylase superfamily APT62_06625 PF00293 NUDIX domain APT62_06635 PF05816 Toxic anion resistance protein (TelA) APT62_06640 PF04226 Transglycosylase associated protein APT62_06645 PF00313 'Cold-shock' DNA-binding domain APT62_06650 PF00133 tRNA synthetases class I (I, L, M and V) APT62_06650 PF08264 Anticodon-binding domain of tRNA APT62_06650 PF06827 Zinc finger found in FPG and IleRS APT62_06655 PF05103 DivIVA protein APT62_06660 PF17774 Putative RNA-binding domain in YlmH APT62_06660 PF01479 S4 domain APT62_06670 PF04472 Cell division protein SepF APT62_06675 PF01168 Alanine racemase, N-terminal domain APT62_06680 PF00091 Tubulin/FtsZ family, GTPase domain APT62_06680 PF12327 FtsZ family, C-terminal domain APT62_06685 PF02491 SHS2 domain inserted in FTSA APT62_06685 PF11983 Membrane-attachment and polymerisation-promoting switch APT62_06690 PF08478 POTRA domain, FtsQ-type APT62_06690 PF03799 Cell division protein FtsQ APT62_06695 PF04101 Glycosyltransferase family 28 C-terminal domain APT62_06695 PF03033 Glycosyltransferase family 28 N-terminal domain APT62_06700 PF02875 Mur ligase family, glutamate ligase domain APT62_06700 PF08245 Mur ligase middle domain APT62_06705 PF00953 Glycosyl transferase family 4 APT62_06705 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 APT62_06720 PF01795 MraW methylase family APT62_06725 PF02381 MraZ protein, putative antitoxin-like APT62_06735 PF01783 Ribosomal L32p protein family APT62_06740 PF02620 Large ribosomal RNA subunit accumulation protein YceD APT62_06745 PF05636 HIGH Nucleotidyl Transferase APT62_06750 PF13649 Methyltransferase domain APT62_06760 PF01966 HD domain APT62_06765 PF01467 Cytidylyltransferase-like APT62_06770 PF01985 CRS1 / YhbY (CRM) domain APT62_06775 PF01926 50S ribosome-binding GTPase APT62_06785 PF08544 GHMP kinases C terminal APT62_06785 PF00288 GHMP kinases N terminal domain APT62_06790 PF01842 ACT domain APT62_06790 PF03447 Homoserine dehydrogenase, NAD binding domain APT62_06790 PF00742 Homoserine dehydrogenase APT62_06795 PF02875 Mur ligase family, glutamate ligase domain APT62_06795 PF08245 Mur ligase middle domain APT62_06800 PF08796 Protein of unknown function (DUF1797) APT62_06805 PF00534 Glycosyl transferases group 1 APT62_06805 PF13439 Glycosyltransferase Family 4 APT62_06810 PF05524 PEP-utilising enzyme, N-terminal APT62_06810 PF00391 PEP-utilising enzyme, mobile domain APT62_06810 PF02896 PEP-utilising enzyme, TIM barrel domain APT62_06815 PF00381 PTS HPr component phosphorylation site APT62_06820 PF00004 ATPase family associated with various cellular activities (AAA) APT62_06820 PF17871 AAA lid domain APT62_06820 PF10431 C-terminal, D2-small domain, of ClpB protein APT62_06820 PF07724 AAA domain (Cdc48 subfamily) APT62_06825 PF03601 Conserved hypothetical protein 698 APT62_06830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT62_06830 PF03466 LysR substrate binding domain APT62_06835 PF03144 Elongation factor Tu domain 2 APT62_06835 PF00009 Elongation factor Tu GTP binding domain APT62_06835 PF16658 Class II release factor RF3, C-terminal domain APT62_06840 PF13673 Acetyltransferase (GNAT) domain APT62_06850 PF02798 Glutathione S-transferase, N-terminal domain APT62_06855 PF00334 Nucleoside diphosphate kinase APT62_06860 PF08534 Redoxin APT62_06865 PF04204 Homoserine O-succinyltransferase APT62_06870 PF01769 Divalent cation transporter APT62_06870 PF03448 MgtE intracellular N domain APT62_06870 PF00571 CBS domain APT62_06880 PF00849 RNA pseudouridylate synthase APT62_06885 PF01513 ATP-NAD kinase APT62_06890 PF04607 Region found in RelA / SpoT proteins APT62_06905 PF08439 Oligopeptidase F APT62_06905 PF01432 Peptidase family M3 APT62_06915 PF00579 tRNA synthetases class I (W and Y) APT62_06920 PF03960 ArsC family APT62_06925 PF05389 Negative regulator of genetic competence (MecA) APT62_06930 PF10437 Bacterial lipoate protein ligase C-terminus APT62_06930 PF03099 Biotin/lipoate A/B protein ligase family APT62_06940 PF03180 NLPA lipoprotein APT62_06945 PF03180 NLPA lipoprotein APT62_06950 PF00528 Binding-protein-dependent transport system inner membrane component APT62_06955 PF09383 NIL domain APT62_06955 PF00005 ABC transporter APT62_06960 PF00453 Ribosomal protein L20 APT62_06965 PF01632 Ribosomal protein L35 APT62_06970 PF00707 Translation initiation factor IF-3, C-terminal domain APT62_06970 PF05198 Translation initiation factor IF-3, N-terminal domain APT62_06980 PF03180 NLPA lipoprotein APT62_06985 PF03352 Methyladenine glycosylase APT62_06995 PF02824 TGS domain APT62_06995 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APT62_06995 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APT62_06995 PF03129 Anticodon binding domain APT62_07000 PF03780 Asp23 family, cell envelope-related function APT62_07015 PF07319 Primosomal protein DnaI N-terminus APT62_07015 PF01695 IstB-like ATP binding protein APT62_07025 PF03477 ATP cone domain APT62_07030 PF01121 Dephospho-CoA kinase APT62_07035 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain APT62_07035 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain APT62_07035 PF06827 Zinc finger found in FPG and IleRS APT62_07040 PF00476 DNA polymerase family A APT62_07040 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain APT62_07040 PF01367 5'-3' exonuclease, C-terminal SAM fold APT62_07050 PF07687 Peptidase dimerisation domain APT62_07050 PF01546 Peptidase family M20/M25/M40 APT62_07055 PF00300 Histidine phosphatase superfamily (branch 1) APT62_07060 PF01116 Fructose-bisphosphate aldolase class-II APT62_07065 PF01116 Fructose-bisphosphate aldolase class-II APT62_07070 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APT62_07075 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APT62_07080 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APT62_07080 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APT62_07080 PF02378 Phosphotransferase system, EIIC APT62_07085 PF08279 HTH domain APT62_07085 PF00874 PRD domain APT62_07085 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APT62_07085 PF05043 Mga helix-turn-helix domain APT62_07085 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APT62_07090 PF01872 RibD C-terminal domain APT62_07095 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) APT62_07100 PF02152 Dihydroneopterin aldolase APT62_07105 PF00809 Pterin binding enzyme APT62_07110 PF01227 GTP cyclohydrolase I APT62_07115 PF02875 Mur ligase family, glutamate ligase domain APT62_07115 PF08245 Mur ligase middle domain APT62_07120 PF13409 Glutathione S-transferase, N-terminal domain APT62_07125 PF11700 Vacuole effluxer Atg22 like APT62_07130 PF03167 Uracil DNA glycosylase superfamily APT62_07150 PF00245 Alkaline phosphatase APT62_07155 PF00483 Nucleotidyl transferase APT62_07165 PF08245 Mur ligase middle domain APT62_07165 PF01225 Mur ligase family, catalytic domain APT62_07165 PF02875 Mur ligase family, glutamate ligase domain APT62_07175 PF01588 Putative tRNA binding domain APT62_07175 PF14794 Domain of unknown function (DUF4479) APT62_07185 PF02390 Putative methyltransferase APT62_07190 PF01636 Phosphotransferase enzyme family APT62_07195 PF05975 Bacterial ABC transporter protein EcsB APT62_07200 PF00005 ABC transporter APT62_07205 PF01230 HIT domain APT62_07215 PF00639 PPIC-type PPIASE domain APT62_07235 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT62_07235 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APT62_07235 PF01842 ACT domain APT62_07240 PF02872 5'-nucleotidase, C-terminal domain APT62_07240 PF00149 Calcineurin-like phosphoesterase APT62_07250 PF01966 HD domain APT62_07255 PF13514 AAA domain APT62_07260 PF00149 Calcineurin-like phosphoesterase APT62_07265 PF06133 Control of competence regulator ComK, YlbF/YmcA APT62_07270 PF00912 Transglycosylase APT62_07270 PF00905 Penicillin binding protein transpeptidase domain APT62_07280 PF00588 SpoU rRNA Methylase family APT62_07295 PF05222 Alanine dehydrogenase/PNT, N-terminal domain APT62_07295 PF01262 Alanine dehydrogenase/PNT, C-terminal domain APT62_07300 PF00005 ABC transporter APT62_07310 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT62_07315 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT62_07320 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT62_07325 PF00528 Binding-protein-dependent transport system inner membrane component APT62_07330 PF00583 Acetyltransferase (GNAT) family APT62_07335 PF03358 NADPH-dependent FMN reductase APT62_07340 PF03180 NLPA lipoprotein APT62_07345 PF00528 Binding-protein-dependent transport system inner membrane component APT62_07350 PF09383 NIL domain APT62_07350 PF00005 ABC transporter APT62_07365 PF00232 Glycosyl hydrolase family 1 APT62_07370 PF00232 Glycosyl hydrolase family 1 APT62_07375 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 APT62_07375 PF00367 phosphotransferase system, EIIB APT62_07375 PF02378 Phosphotransferase system, EIIC APT62_07385 PF02615 Malate/L-lactate dehydrogenase APT62_07390 PF00155 Aminotransferase class I and II APT62_07390 PF00392 Bacterial regulatory proteins, gntR family APT62_07395 PF03123 CAT RNA binding domain APT62_07395 PF00874 PRD domain APT62_07405 PF00248 Aldo/keto reductase family APT62_07410 PF02378 Phosphotransferase system, EIIC APT62_07420 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit APT62_07425 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APT62_07430 PF00392 Bacterial regulatory proteins, gntR family APT62_07430 PF07702 UTRA domain APT62_07435 PF00232 Glycosyl hydrolase family 1 APT62_07440 PF00300 Histidine phosphatase superfamily (branch 1) APT62_07445 PF00793 DAHP synthetase I family APT62_07450 PF03180 NLPA lipoprotein APT62_07455 PF00296 Luciferase-like monooxygenase APT62_07465 PF02417 Chromate transporter APT62_07565 PF00248 Aldo/keto reductase family APT62_07575 PF14748 Pyrroline-5-carboxylate reductase dimerisation APT62_07575 PF03807 NADP oxidoreductase coenzyme F420-dependent APT62_07580 PF06081 Aromatic acid exporter family member 1 APT62_07585 PF00128 Alpha amylase, catalytic domain APT62_07585 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APT62_07585 PF17999 Pullulanase N1-terminal domain APT62_07595 PF04167 Protein of unknown function (DUF402) APT62_07600 PF00730 HhH-GPD superfamily base excision DNA repair protein APT62_07600 PF14815 NUDIX domain APT62_07605 PF02631 RecX family APT62_07630 PF16363 GDP-mannose 4,6 dehydratase APT62_07640 PF02153 Prephenate dehydrogenase APT62_07645 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT62_07650 PF00390 Malic enzyme, N-terminal domain APT62_07650 PF03949 Malic enzyme, NAD binding domain APT62_07655 PF03390 2-hydroxycarboxylate transporter family APT62_07660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT62_07660 PF00989 PAS fold APT62_07660 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain APT62_07660 PF17203 Single cache domain 3 APT62_07665 PF00072 Response regulator receiver domain APT62_07670 PF00296 Luciferase-like monooxygenase APT62_07675 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT62_07680 PF00528 Binding-protein-dependent transport system inner membrane component APT62_07685 PF00005 ABC transporter APT62_07690 PF00296 Luciferase-like monooxygenase APT62_07695 PF00462 Glutaredoxin APT62_07700 PF00296 Luciferase-like monooxygenase APT62_07710 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APT62_07710 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT62_07715 PF02423 Ornithine cyclodeaminase/mu-crystallin family APT62_07735 PF06177 QueT transporter APT62_07740 PF13460 NAD(P)H-binding APT62_07760 PF00248 Aldo/keto reductase family APT62_07775 PF00795 Carbon-nitrogen hydrolase APT62_07780 PF01297 Zinc-uptake complex component A periplasmic APT62_07780 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment APT62_07785 PF00255 Glutathione peroxidase APT62_07790 PF07702 UTRA domain APT62_07790 PF00392 Bacterial regulatory proteins, gntR family APT62_07810 PF01502 Phosphoribosyl-AMP cyclohydrolase APT62_07810 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase APT62_07815 PF00977 Histidine biosynthesis protein APT62_07820 PF00977 Histidine biosynthesis protein APT62_07825 PF00475 Imidazoleglycerol-phosphate dehydratase APT62_07830 PF00155 Aminotransferase class I and II APT62_07835 PF00815 Histidinol dehydrogenase APT62_07840 PF01634 ATP phosphoribosyltransferase APT62_07845 PF13393 Histidyl-tRNA synthetase APT62_07855 PF00392 Bacterial regulatory proteins, gntR family APT62_07860 PF00005 ABC transporter APT62_07875 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT62_07875 PF00005 ABC transporter APT62_07880 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT62_07880 PF00005 ABC transporter APT62_07885 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT62_07890 PF00528 Binding-protein-dependent transport system inner membrane component APT62_07895 PF00528 Binding-protein-dependent transport system inner membrane component APT62_07900 PF07687 Peptidase dimerisation domain APT62_07900 PF01546 Peptidase family M20/M25/M40 APT62_07905 PF01546 Peptidase family M20/M25/M40 APT62_07905 PF07687 Peptidase dimerisation domain APT62_07910 PF01979 Amidohydrolase family APT62_07915 PF13458 Periplasmic binding protein APT62_07925 PF13556 PucR C-terminal helix-turn-helix domain APT62_07925 PF05651 Putative sugar diacid recognition APT62_07925 PF17853 GGDEF-like domain APT62_07930 PF02595 Glycerate kinase family APT62_07935 PF02447 GntP family permease APT62_07945 PF08543 Phosphomethylpyrimidine kinase APT62_07950 PF02581 Thiamine monophosphate synthase APT62_07955 PF02110 Hydroxyethylthiazole kinase family APT62_07965 PF06803 Protein of unknown function (DUF1232) APT62_07975 PF01638 HxlR-like helix-turn-helix APT62_07985 PF00232 Glycosyl hydrolase family 1 APT62_07990 PF00367 phosphotransferase system, EIIB APT62_07990 PF02378 Phosphotransferase system, EIIC APT62_07990 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 APT62_08000 PF00440 Bacterial regulatory proteins, tetR family APT62_08005 PF00005 ABC transporter APT62_08015 PF01501 Glycosyl transferase family 8 APT62_08025 PF00885 6,7-dimethyl-8-ribityllumazine synthase APT62_08035 PF00677 Lumazine binding domain APT62_08040 PF01872 RibD C-terminal domain APT62_08040 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APT62_08045 PF00633 Helix-hairpin-helix motif APT62_08045 PF10576 Iron-sulfur binding domain of endonuclease III APT62_08045 PF00730 HhH-GPD superfamily base excision DNA repair protein APT62_08050 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain APT62_08050 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain APT62_08055 PF14552 Tautomerase enzyme APT62_08060 PF07883 Cupin domain APT62_08075 PF00380 Ribosomal protein S9/S16 APT62_08080 PF00572 Ribosomal protein L13 APT62_08085 PF03466 LysR substrate binding domain APT62_08085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT62_08090 PF01717 Cobalamin-independent synthase, Catalytic domain APT62_08105 PF00274 Fructose-bisphosphate aldolase class-I APT62_08110 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase APT62_08110 PF07055 Enoyl reductase FAD binding domain APT62_08110 PF12241 Trans-2-enoyl-CoA reductase catalytic region APT62_08115 PF01487 Type I 3-dehydroquinase APT62_08120 PF01416 tRNA pseudouridine synthase APT62_08125 PF02361 Cobalt transport protein APT62_08130 PF00005 ABC transporter APT62_08135 PF00005 ABC transporter APT62_08145 PF01757 Acyltransferase family APT62_08150 PF01196 Ribosomal protein L17 APT62_08155 PF01000 RNA polymerase Rpb3/RpoA insert domain APT62_08155 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain APT62_08155 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain APT62_08160 PF00411 Ribosomal protein S11 APT62_08165 PF00416 Ribosomal protein S13/S18 APT62_08170 PF01176 Translation initiation factor 1A / IF-1 APT62_08175 PF05191 Adenylate kinase, active site lid APT62_08180 PF00344 SecY translocase APT62_08185 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A APT62_08190 PF00327 Ribosomal protein L30p/L7e APT62_08195 PF03719 Ribosomal protein S5, C-terminal domain APT62_08195 PF00333 Ribosomal protein S5, N-terminal domain APT62_08200 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast APT62_08205 PF00347 Ribosomal protein L6 APT62_08210 PF00410 Ribosomal protein S8 APT62_08215 PF00253 Ribosomal protein S14p/S29e APT62_08220 PF00281 Ribosomal protein L5 APT62_08220 PF00673 ribosomal L5P family C-terminus APT62_08225 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 APT62_08225 PF00467 KOW motif APT62_08230 PF00238 Ribosomal protein L14p/L23e APT62_08235 PF00366 Ribosomal protein S17 APT62_08240 PF00831 Ribosomal L29 protein APT62_08245 PF00252 Ribosomal protein L16p/L10e APT62_08250 PF07650 KH domain APT62_08250 PF00189 Ribosomal protein S3, C-terminal domain APT62_08255 PF00237 Ribosomal protein L22p/L17e APT62_08260 PF00203 Ribosomal protein S19 APT62_08265 PF03947 Ribosomal Proteins L2, C-terminal domain APT62_08265 PF00181 Ribosomal Proteins L2, RNA binding domain APT62_08270 PF00276 Ribosomal protein L23 APT62_08275 PF00573 Ribosomal protein L4/L1 family APT62_08280 PF00297 Ribosomal protein L3 APT62_08285 PF00338 Ribosomal protein S10p/S20e APT62_08300 PF07155 ECF-type riboflavin transporter, S component APT62_08305 PF12558 ATP-binding cassette cobalt transporter APT62_08305 PF00005 ABC transporter APT62_08315 PF03144 Elongation factor Tu domain 2 APT62_08315 PF03143 Elongation factor Tu C-terminal domain APT62_08315 PF00009 Elongation factor Tu GTP binding domain APT62_08320 PF00679 Elongation factor G C-terminus APT62_08320 PF14492 Elongation Factor G, domain II APT62_08320 PF03764 Elongation factor G, domain IV APT62_08320 PF00009 Elongation factor Tu GTP binding domain APT62_08320 PF03144 Elongation factor Tu domain 2 APT62_08325 PF00177 Ribosomal protein S7p/S5e APT62_08330 PF00164 Ribosomal protein S12/S23 APT62_08335 PF01336 OB-fold nucleic acid binding domain APT62_08335 PF00152 tRNA synthetases class II (D, K and N) APT62_08340 PF01022 Bacterial regulatory protein, arsR family APT62_08345 PF00291 Pyridoxal-phosphate dependent enzyme APT62_08350 PF01430 Hsp33 protein APT62_08355 PF00004 ATPase family associated with various cellular activities (AAA) APT62_08355 PF01434 Peptidase family M41 APT62_08355 PF17862 AAA+ lid domain APT62_08355 PF06480 FtsH Extracellular APT62_08365 PF11734 TilS substrate C-terminal domain APT62_08365 PF01171 PP-loop family APT62_08370 PF00575 S1 RNA binding domain APT62_08380 PF01479 S4 domain APT62_08385 PF14667 Polysaccharide biosynthesis C-terminal domain APT62_08385 PF01943 Polysaccharide biosynthesis protein APT62_08390 PF17757 UvrB interaction domain APT62_08390 PF03461 TRCF domain APT62_08390 PF00270 DEAD/DEAH box helicase APT62_08390 PF02559 CarD-like/TRCF domain APT62_08390 PF00271 Helicase conserved C-terminal domain APT62_08395 PF01195 Peptidyl-tRNA hydrolase APT62_08400 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain APT62_08400 PF00056 lactate/malate dehydrogenase, NAD binding domain APT62_08410 PF14572 Phosphoribosyl synthetase-associated domain APT62_08410 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase APT62_08415 PF00132 Bacterial transferase hexapeptide (six repeats) APT62_08415 PF00483 Nucleotidyl transferase APT62_08420 PF00270 DEAD/DEAH box helicase APT62_08420 PF00271 Helicase conserved C-terminal domain APT62_08425 PF00149 Calcineurin-like phosphoesterase APT62_08430 PF02151 UvrB/uvrC motif APT62_08430 PF08459 UvrC Helix-hairpin-helix N-terminal APT62_08430 PF01541 GIY-YIG catalytic domain APT62_08455 PF01337 Barstar (barnase inhibitor) APT62_08460 PF00545 ribonuclease APT62_08465 PF00484 Carbonic anhydrase APT62_08470 PF03976 Polyphosphate kinase 2 (PPK2) APT62_08525 PF03471 Transporter associated domain APT62_08525 PF00571 CBS domain APT62_08525 PF01595 Cyclin M transmembrane N-terminal domain APT62_08530 PF00933 Glycosyl hydrolase family 3 N terminal domain APT62_08540 PF00753 Metallo-beta-lactamase superfamily APT62_08545 PF06177 QueT transporter APT62_08550 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) APT62_08555 PF00528 Binding-protein-dependent transport system inner membrane component APT62_08560 PF04069 Substrate binding domain of ABC-type glycine betaine transport system APT62_08565 PF00528 Binding-protein-dependent transport system inner membrane component APT62_08570 PF00571 CBS domain APT62_08570 PF00005 ABC transporter APT62_08575 PF01648 4'-phosphopantetheinyl transferase superfamily APT62_08580 PF00270 DEAD/DEAH box helicase APT62_08580 PF00271 Helicase conserved C-terminal domain APT62_08585 PF08245 Mur ligase middle domain APT62_08585 PF02875 Mur ligase family, glutamate ligase domain APT62_08585 PF01225 Mur ligase family, catalytic domain APT62_08590 PF01820 D-ala D-ala ligase N-terminus APT62_08590 PF07478 D-ala D-ala ligase C-terminus APT62_08605 PF04203 Sortase domain APT62_08610 PF00132 Bacterial transferase hexapeptide (six repeats) APT62_08615 PF00291 Pyridoxal-phosphate dependent enzyme APT62_08620 PF00583 Acetyltransferase (GNAT) family APT62_08625 PF01042 Endoribonuclease L-PSP APT62_08630 PF01197 Ribosomal protein L31 APT62_08635 PF07497 Rho termination factor, RNA-binding domain APT62_08635 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APT62_08635 PF07498 Rho termination factor, N-terminal domain APT62_08640 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APT62_08645 PF01116 Fructose-bisphosphate aldolase class-II APT62_08650 PF04205 FMN-binding domain APT62_08650 PF03358 NADPH-dependent FMN reductase APT62_08650 PF00890 FAD binding domain APT62_08655 PF04205 FMN-binding domain APT62_08655 PF03358 NADPH-dependent FMN reductase APT62_08655 PF00890 FAD binding domain APT62_08660 PF02424 ApbE family APT62_08665 PF04304 Protein of unknown function (DUF454) APT62_08670 PF07690 Major Facilitator Superfamily APT62_08675 PF00156 Phosphoribosyl transferase domain APT62_08680 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family APT62_08690 PF01048 Phosphorylase superfamily APT62_08695 PF03180 NLPA lipoprotein APT62_08705 PF02664 S-Ribosylhomocysteinase (LuxS) APT62_08710 PF06418 CTP synthase N-terminus APT62_08710 PF00117 Glutamine amidotransferase class-I APT62_08715 PF05066 HB1, ASXL, restriction endonuclease HTH domain APT62_08725 PF03099 Biotin/lipoate A/B protein ligase family APT62_08730 PF01966 HD domain APT62_08735 PF07690 Major Facilitator Superfamily APT62_08740 PF00155 Aminotransferase class I and II APT62_08745 PF00664 ABC transporter transmembrane region APT62_08745 PF00005 ABC transporter APT62_08755 PF01266 FAD dependent oxidoreductase APT62_08760 PF00285 Citrate synthase, C-terminal domain APT62_08770 PF03972 MmgE/PrpD family APT62_08775 PF01741 Large-conductance mechanosensitive channel, MscL APT62_08785 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APT62_08790 PF01541 GIY-YIG catalytic domain APT62_08795 PF05175 Methyltransferase small domain APT62_08800 PF06156 Initiation control protein YabA APT62_08810 PF08279 HTH domain APT62_08810 PF02237 Biotin protein ligase C terminal domain APT62_08810 PF03099 Biotin/lipoate A/B protein ligase family APT62_08820 PF04205 FMN-binding domain APT62_08820 PF03358 NADPH-dependent FMN reductase APT62_08820 PF00890 FAD binding domain APT62_08825 PF03358 NADPH-dependent FMN reductase APT62_08825 PF00890 FAD binding domain APT62_08825 PF04205 FMN-binding domain APT62_08830 PF00005 ABC transporter APT62_08845 PF00005 ABC transporter APT62_08855 PF09115 DNA polymerase III, delta subunit, C terminal APT62_08860 PF02223 Thymidylate kinase APT62_08865 PF13662 Toprim domain APT62_08865 PF02132 RecR protein APT62_08870 PF02575 YbaB/EbfC DNA-binding family APT62_08875 PF12169 DNA polymerase III subunits gamma and tau domain III APT62_08880 PF02773 S-adenosylmethionine synthetase, C-terminal domain APT62_08880 PF00438 S-adenosylmethionine synthetase, N-terminal domain APT62_08880 PF02772 S-adenosylmethionine synthetase, central domain APT62_08895 PF00528 Binding-protein-dependent transport system inner membrane component APT62_08900 PF00528 Binding-protein-dependent transport system inner membrane component APT62_08905 PF01547 Bacterial extracellular solute-binding protein APT62_08940 PF04983 RNA polymerase Rpb1, domain 3 APT62_08940 PF00623 RNA polymerase Rpb1, domain 2 APT62_08940 PF04997 RNA polymerase Rpb1, domain 1 APT62_08940 PF05000 RNA polymerase Rpb1, domain 4 APT62_08940 PF04998 RNA polymerase Rpb1, domain 5 APT62_08945 PF04563 RNA polymerase beta subunit APT62_08945 PF04561 RNA polymerase Rpb2, domain 2 APT62_08945 PF04565 RNA polymerase Rpb2, domain 3 APT62_08945 PF10385 RNA polymerase beta subunit external 1 domain APT62_08945 PF04560 RNA polymerase Rpb2, domain 7 APT62_08945 PF00562 RNA polymerase Rpb2, domain 6 APT62_08950 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APT62_08950 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT62_08955 PF04069 Substrate binding domain of ABC-type glycine betaine transport system APT62_08960 PF04069 Substrate binding domain of ABC-type glycine betaine transport system APT62_08965 PF00528 Binding-protein-dependent transport system inner membrane component APT62_08970 PF00571 CBS domain APT62_08970 PF00005 ABC transporter APT62_08975 PF05175 Methyltransferase small domain APT62_08980 PF00950 ABC 3 transport family APT62_08985 PF00950 ABC 3 transport family APT62_08990 PF00005 ABC transporter APT62_08995 PF01297 Zinc-uptake complex component A periplasmic APT62_09000 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT62_09005 PF00528 Binding-protein-dependent transport system inner membrane component APT62_09020 PF16320 Ribosomal protein L7/L12 dimerisation domain APT62_09020 PF00542 Ribosomal protein L7/L12 C-terminal domain APT62_09025 PF00466 Ribosomal protein L10 APT62_09030 PF00687 Ribosomal protein L1p/L10e family APT62_09035 PF03946 Ribosomal protein L11, N-terminal domain APT62_09035 PF00298 Ribosomal protein L11, RNA binding domain APT62_09040 PF01895 PhoU domain APT62_09050 PF00467 KOW motif APT62_09050 PF02357 Transcription termination factor nusG APT62_09080 PF00588 SpoU rRNA Methylase family APT62_09080 PF08032 RNA 2'-O ribose methyltransferase substrate binding APT62_09085 PF00636 Ribonuclease III domain APT62_09090 PF09190 DALR domain APT62_09090 PF01406 tRNA synthetases class I (C) catalytic domain APT62_09095 PF00145 C-5 cytosine-specific DNA methylase APT62_09100 PF02976 DNA mismatch repair enzyme MutH APT62_09120 PF01636 Phosphotransferase enzyme family APT62_09125 PF00005 ABC transporter APT62_09130 PF13419 Haloacid dehalogenase-like hydrolase APT62_09140 PF03180 NLPA lipoprotein APT62_09145 PF01225 Mur ligase family, catalytic domain APT62_09145 PF02875 Mur ligase family, glutamate ligase domain APT62_09145 PF08245 Mur ligase middle domain APT62_09150 PF13302 Acetyltransferase (GNAT) domain APT62_09155 PF00005 ABC transporter APT62_09155 PF00571 CBS domain APT62_09160 PF00528 Binding-protein-dependent transport system inner membrane component APT62_09165 PF03812 2-keto-3-deoxygluconate permease APT62_09170 PF00860 Permease family APT62_09175 PF00156 Phosphoribosyl transferase domain APT62_09180 PF00268 Ribonucleotide reductase, small chain APT62_09185 PF08343 Ribonucleotide reductase N-terminal APT62_09185 PF00317 Ribonucleotide reductase, all-alpha domain APT62_09185 PF02867 Ribonucleotide reductase, barrel domain APT62_09190 PF07972 NrdI Flavodoxin like APT62_09200 PF00749 tRNA synthetases class I (E and Q), catalytic domain APT62_09210 PF18073 Rubredoxin metal binding domain APT62_09215 PF00692 dUTPase APT62_09220 PF09154 Domain of unknown function (DUF1939) APT62_09220 PF00128 Alpha amylase, catalytic domain APT62_09235 PF00675 Insulinase (Peptidase family M16) APT62_09235 PF05193 Peptidase M16 inactive domain APT62_09235 PF08367 Peptidase M16C associated APT62_09250 PF01381 Helix-turn-helix APT62_09270 PF00005 ABC transporter APT62_09285 PF01226 Formate/nitrite transporter APT62_09290 PF01238 Phosphomannose isomerase type I APT62_09300 PF03613 PTS system mannose/fructose/sorbose family IID component APT62_09305 PF03609 PTS system sorbose-specific iic component APT62_09310 PF03610 PTS system fructose IIA component APT62_09310 PF03830 PTS system sorbose subfamily IIB component APT62_09320 PF00155 Aminotransferase class I and II APT62_09325 PF13411 MerR HTH family regulatory protein APT62_09330 PF16916 Dimerisation domain of Zinc Transporter APT62_09330 PF01545 Cation efflux family APT62_09335 PF00155 Aminotransferase class I and II APT62_09340 PF03610 PTS system fructose IIA component APT62_09345 PF02733 Dak1 domain APT62_09350 PF02734 DAK2 domain APT62_09360 PF01883 Iron-sulfur cluster assembly protein APT62_09375 PF03477 ATP cone domain APT62_09375 PF13597 Anaerobic ribonucleoside-triphosphate reductase APT62_09385 PF01712 Deoxynucleoside kinase APT62_09390 PF01966 HD domain APT62_09400 PF01063 Amino-transferase class IV APT62_09405 PF04172 LrgB-like family APT62_09410 PF03788 LrgA family APT62_09420 PF00561 alpha/beta hydrolase fold APT62_09435 PF01712 Deoxynucleoside kinase APT62_09440 PF00367 phosphotransferase system, EIIB APT62_09440 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 APT62_09440 PF02378 Phosphotransferase system, EIIC APT62_09445 PF01546 Peptidase family M20/M25/M40 APT62_09445 PF07687 Peptidase dimerisation domain APT62_09450 PF01965 DJ-1/PfpI family APT62_09460 PF03070 TENA/THI-4/PQQC family APT62_09470 PF00005 ABC transporter APT62_09485 PF00403 Heavy-metal-associated domain APT62_09495 PF00709 Adenylosuccinate synthetase APT62_09500 PF03796 DnaB-like helicase C terminal domain APT62_09500 PF00772 DnaB-like helicase N terminal domain APT62_09505 PF01281 Ribosomal protein L9, N-terminal domain APT62_09505 PF03948 Ribosomal protein L9, C-terminal domain APT62_09510 PF01368 DHH family APT62_09510 PF02272 DHHA1 domain