APT62_00035	PWY-5057	L-valine degradation II
APT62_00035	PWY-5076	L-leucine degradation III
APT62_00035	PWY-5078	L-isoleucine degradation II
APT62_00035	PWY-5101	L-isoleucine biosynthesis II
APT62_00035	PWY-5103	L-isoleucine biosynthesis III
APT62_00035	PWY-5104	L-isoleucine biosynthesis IV
APT62_00035	PWY-5108	L-isoleucine biosynthesis V
APT62_00035	PWY-7767	APT62_00035
APT62_00040	PWY-6349	CDP-archaeol biosynthesis
APT62_00115	PWY-6610	adenine and adenosine salvage IV
APT62_00205	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
APT62_00205	PWY-6596	adenosine nucleotides degradation I
APT62_00205	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
APT62_00225	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
APT62_00295	PWY-7942	APT62_00295
APT62_00300	PWY-5199	factor 420 polyglutamylation
APT62_00465	PWY-6749	CMP-legionaminate biosynthesis I
APT62_00500	PWY-6749	CMP-legionaminate biosynthesis I
APT62_00510	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APT62_00510	PWY-6855	chitin degradation I (archaea)
APT62_00510	PWY-6906	chitin derivatives degradation
APT62_00530	PWY-6531	mannitol cycle
APT62_00600	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APT62_00600	PWY-5723	Rubisco shunt
APT62_00600	PWY-6891	thiazole biosynthesis II (Bacillus)
APT62_00600	PWY-6892	thiazole biosynthesis I (E. coli)
APT62_00600	PWY-6901	superpathway of glucose and xylose degradation
APT62_00600	PWY-7560	methylerythritol phosphate pathway II
APT62_00605	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APT62_00605	PWY-5723	Rubisco shunt
APT62_00640	PWY-5101	L-isoleucine biosynthesis II
APT62_00640	PWY-5103	L-isoleucine biosynthesis III
APT62_00640	PWY-5104	L-isoleucine biosynthesis IV
APT62_00640	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
APT62_00640	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
APT62_00640	PWY-6389	(<i>S</i>)-acetoin biosynthesis
APT62_00640	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APT62_00650	PWY-5103	L-isoleucine biosynthesis III
APT62_00650	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APT62_00740	PWY-6349	CDP-archaeol biosynthesis
APT62_00840	PWY-5941	glycogen degradation II (eukaryotic)
APT62_00840	PWY-6724	starch degradation II
APT62_00840	PWY-6737	starch degradation V
APT62_00840	PWY-7238	sucrose biosynthesis II
APT62_00845	PWY-5941	glycogen degradation II (eukaryotic)
APT62_00845	PWY-6731	starch degradation III
APT62_00845	PWY-6737	starch degradation V
APT62_00845	PWY-7238	sucrose biosynthesis II
APT62_00925	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
APT62_00985	PWY-7980	APT62_00985
APT62_00990	PWY-7980	APT62_00990
APT62_01075	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APT62_01080	PWY-4983	L-citrulline-nitric oxide cycle
APT62_01080	PWY-4984	urea cycle
APT62_01080	PWY-5	canavanine biosynthesis
APT62_01080	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT62_01080	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APT62_01090	PWY-4983	L-citrulline-nitric oxide cycle
APT62_01090	PWY-4984	urea cycle
APT62_01090	PWY-5	canavanine biosynthesis
APT62_01090	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT62_01090	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APT62_01115	PWY-5381	pyridine nucleotide cycling (plants)
APT62_01265	PWY-5667	CDP-diacylglycerol biosynthesis I
APT62_01265	PWY-5981	CDP-diacylglycerol biosynthesis III
APT62_01265	PWY-7902	APT62_01265
APT62_01270	PWY-3801	sucrose degradation II (sucrose synthase)
APT62_01270	PWY-6527	stachyose degradation
APT62_01270	PWY-7238	sucrose biosynthesis II
APT62_01270	PWY-7343	UDP-glucose biosynthesis
APT62_01270	PWY-7817	APT62_01270
APT62_01280	PWY-6749	CMP-legionaminate biosynthesis I
APT62_01330	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
APT62_01330	PWY-3162	L-tryptophan degradation V (side chain pathway)
APT62_01330	PWY-5057	L-valine degradation II
APT62_01330	PWY-5076	L-leucine degradation III
APT62_01330	PWY-5078	L-isoleucine degradation II
APT62_01330	PWY-5079	L-phenylalanine degradation III
APT62_01330	PWY-5082	L-methionine degradation III
APT62_01330	PWY-5480	pyruvate fermentation to ethanol I
APT62_01330	PWY-5486	pyruvate fermentation to ethanol II
APT62_01330	PWY-5751	phenylethanol biosynthesis
APT62_01330	PWY-6313	serotonin degradation
APT62_01330	PWY-6333	acetaldehyde biosynthesis I
APT62_01330	PWY-6342	noradrenaline and adrenaline degradation
APT62_01330	PWY-6587	pyruvate fermentation to ethanol III
APT62_01330	PWY-6802	salidroside biosynthesis
APT62_01330	PWY-6871	3-methylbutanol biosynthesis
APT62_01330	PWY-7013	L-1,2-propanediol degradation
APT62_01330	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APT62_01330	PWY-7118	chitin degradation to ethanol
APT62_01330	PWY-7396	butanol and isobutanol biosynthesis (engineered)
APT62_01330	PWY-7798	APT62_01330
APT62_01335	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
APT62_01430	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APT62_01480	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APT62_01500	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
APT62_01500	PWY-6153	autoinducer AI-2 biosynthesis I
APT62_01500	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
APT62_01540	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
APT62_01685	PWY-5958	acridone alkaloid biosynthesis
APT62_01685	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
APT62_01685	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
APT62_01690	PWY-5958	acridone alkaloid biosynthesis
APT62_01690	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
APT62_01690	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
APT62_01855	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
APT62_01855	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
APT62_01870	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
APT62_01870	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
APT62_01935	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
APT62_01955	PWY-1622	formaldehyde assimilation I (serine pathway)
APT62_01955	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT62_02020	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
APT62_02020	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
APT62_02085	PWY-5386	methylglyoxal degradation I
APT62_02145	PWY-381	nitrate reduction II (assimilatory)
APT62_02145	PWY-5675	nitrate reduction V (assimilatory)
APT62_02145	PWY-6549	L-glutamine biosynthesis III
APT62_02145	PWY-6963	ammonia assimilation cycle I
APT62_02145	PWY-6964	ammonia assimilation cycle II
APT62_02155	PWY-5030	L-histidine degradation III
APT62_02155	PWY-5497	purine nucleobases degradation II (anaerobic)
APT62_02210	PWY-7560	methylerythritol phosphate pathway II
APT62_02245	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
APT62_02245	PWY-7820	APT62_02245
APT62_02315	PWY-7799	APT62_02315
APT62_02315	PWY-7800	APT62_02315
APT62_02405	PWY-3341	L-proline biosynthesis III
APT62_02405	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
APT62_02410	PWY-3341	L-proline biosynthesis III
APT62_02410	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
APT62_02420	PWY-2941	L-lysine biosynthesis II
APT62_02420	PWY-2942	L-lysine biosynthesis III
APT62_02420	PWY-5097	L-lysine biosynthesis VI
APT62_02475	PWY-6123	inosine-5'-phosphate biosynthesis I
APT62_02475	PWY-6124	inosine-5'-phosphate biosynthesis II
APT62_02475	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APT62_02475	PWY-7234	inosine-5'-phosphate biosynthesis III
APT62_02485	PWY-2941	L-lysine biosynthesis II
APT62_02485	PWY-2942	L-lysine biosynthesis III
APT62_02485	PWY-5097	L-lysine biosynthesis VI
APT62_02490	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APT62_02545	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APT62_02545	PWY-5723	Rubisco shunt
APT62_02550	PWY-7242	D-fructuronate degradation
APT62_02565	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APT62_02565	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
APT62_02565	PWY-7242	D-fructuronate degradation
APT62_02565	PWY-7310	D-glucosaminate degradation
APT62_02565	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
APT62_02575	PWY-7247	&beta;-D-glucuronide and D-glucuronate degradation
APT62_02575	PWY-7248	pectin degradation III
APT62_02580	PWY-6174	mevalonate pathway II (archaea)
APT62_02580	PWY-7391	isoprene biosynthesis II (engineered)
APT62_02580	PWY-7524	mevalonate pathway III (archaea)
APT62_02580	PWY-7571	ferrichrome A biosynthesis
APT62_02580	PWY-922	mevalonate pathway I
APT62_02585	PWY-6174	mevalonate pathway II (archaea)
APT62_02585	PWY-7391	isoprene biosynthesis II (engineered)
APT62_02585	PWY-7524	mevalonate pathway III (archaea)
APT62_02585	PWY-922	mevalonate pathway I
APT62_02610	PWY-7851	APT62_02610
APT62_02635	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
APT62_02635	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
APT62_02700	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APT62_02700	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
APT62_02700	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APT62_02700	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APT62_02715	PWY-5750	itaconate biosynthesis
APT62_02715	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT62_02715	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
APT62_02770	PWY-7851	APT62_02770
APT62_02815	PWY-2941	L-lysine biosynthesis II
APT62_02815	PWY-2942	L-lysine biosynthesis III
APT62_02815	PWY-5097	L-lysine biosynthesis VI
APT62_02815	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT62_02815	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
APT62_02815	PWY-6559	spermidine biosynthesis II
APT62_02815	PWY-6562	norspermidine biosynthesis
APT62_02815	PWY-7153	grixazone biosynthesis
APT62_02815	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APT62_02815	PWY-7977	APT62_02815
APT62_02840	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
APT62_02850	PWY-5497	purine nucleobases degradation II (anaerobic)
APT62_02850	PWY-6606	guanosine nucleotides degradation II
APT62_02850	PWY-6608	guanosine nucleotides degradation III
APT62_02850	PWY-7442	drosopterin and aurodrosopterin biosynthesis
APT62_02885	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APT62_02885	PWY-5723	Rubisco shunt
APT62_02890	PWY-6898	thiamin salvage III
APT62_02890	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
APT62_02890	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
APT62_02890	PWY-7356	thiamin salvage IV (yeast)
APT62_02950	PWY-3821	galactose degradation III
APT62_02950	PWY-6317	galactose degradation I (Leloir pathway)
APT62_02950	PWY-6527	stachyose degradation
APT62_03035	PWY-3821	galactose degradation III
APT62_03035	PWY-6317	galactose degradation I (Leloir pathway)
APT62_03035	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
APT62_03035	PWY-6527	stachyose degradation
APT62_03035	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
APT62_03035	PWY-7344	UDP-D-galactose biosynthesis
APT62_03100	PWY-6749	CMP-legionaminate biosynthesis I
APT62_03100	PWY-7131	CMP-legionaminate biosynthesis II
APT62_03120	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
APT62_03165	PWY-5480	pyruvate fermentation to ethanol I
APT62_03165	PWY-5485	pyruvate fermentation to acetate IV
APT62_03165	PWY-5493	reductive monocarboxylic acid cycle
APT62_03175	PWY-3162	L-tryptophan degradation V (side chain pathway)
APT62_03175	PWY-5057	L-valine degradation II
APT62_03175	PWY-5076	L-leucine degradation III
APT62_03175	PWY-5078	L-isoleucine degradation II
APT62_03175	PWY-5079	L-phenylalanine degradation III
APT62_03175	PWY-5082	L-methionine degradation III
APT62_03175	PWY-5480	pyruvate fermentation to ethanol I
APT62_03175	PWY-5486	pyruvate fermentation to ethanol II
APT62_03175	PWY-5751	phenylethanol biosynthesis
APT62_03175	PWY-6313	serotonin degradation
APT62_03175	PWY-6333	acetaldehyde biosynthesis I
APT62_03175	PWY-6342	noradrenaline and adrenaline degradation
APT62_03175	PWY-6587	pyruvate fermentation to ethanol III
APT62_03175	PWY-6802	salidroside biosynthesis
APT62_03175	PWY-6871	3-methylbutanol biosynthesis
APT62_03175	PWY-7013	L-1,2-propanediol degradation
APT62_03175	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APT62_03175	PWY-7118	chitin degradation to ethanol
APT62_03175	PWY-7396	butanol and isobutanol biosynthesis (engineered)
APT62_03310	PWY-6829	tRNA methylation (yeast)
APT62_03310	PWY-7285	methylwyosine biosynthesis
APT62_03310	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
APT62_03320	PWY-1042	glycolysis IV (plant cytosol)
APT62_03320	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APT62_03320	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT62_03320	PWY-5723	Rubisco shunt
APT62_03320	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT62_03320	PWY-6886	1-butanol autotrophic biosynthesis
APT62_03320	PWY-6901	superpathway of glucose and xylose degradation
APT62_03320	PWY-7003	glycerol degradation to butanol
APT62_03320	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
APT62_03320	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APT62_03450	PWY-4261	glycerol degradation I
APT62_03470	PWY-6123	inosine-5'-phosphate biosynthesis I
APT62_03470	PWY-6124	inosine-5'-phosphate biosynthesis II
APT62_03470	PWY-7234	inosine-5'-phosphate biosynthesis III
APT62_03480	PWY-6123	inosine-5'-phosphate biosynthesis I
APT62_03480	PWY-7234	inosine-5'-phosphate biosynthesis III
APT62_03485	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APT62_03485	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APT62_03485	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APT62_03485	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
APT62_03490	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APT62_03490	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APT62_03490	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APT62_03495	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APT62_03495	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
APT62_03500	PWY-6123	inosine-5'-phosphate biosynthesis I
APT62_03500	PWY-6124	inosine-5'-phosphate biosynthesis II
APT62_03500	PWY-7234	inosine-5'-phosphate biosynthesis III
APT62_03505	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APT62_03505	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APT62_03505	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APT62_03530	PWY-5350	thiosulfate disproportionation III (rhodanese)
APT62_03530	PWY-7927	APT62_03530
APT62_03620	PWY-6700	queuosine biosynthesis
APT62_03645	PWY-1281	sulfoacetaldehyde degradation I
APT62_03645	PWY-5482	pyruvate fermentation to acetate II
APT62_03645	PWY-5485	pyruvate fermentation to acetate IV
APT62_03645	PWY-5497	purine nucleobases degradation II (anaerobic)
APT62_03645	PWY-6637	sulfolactate degradation II
APT62_03650	PWY-7805	APT62_03650
APT62_03650	PWY-7807	APT62_03650
APT62_03660	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
APT62_03675	PWY-6854	ethylene biosynthesis III (microbes)
APT62_03705	PWY-2722	trehalose degradation IV
APT62_03705	PWY-2723	trehalose degradation V
APT62_03705	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APT62_03705	PWY-5661	GDP-glucose biosynthesis
APT62_03705	PWY-621	sucrose degradation III (sucrose invertase)
APT62_03705	PWY-7238	sucrose biosynthesis II
APT62_03705	PWY-7385	1,3-propanediol biosynthesis (engineered)
APT62_03720	PWY-2161	folate polyglutamylation
APT62_03730	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
APT62_03730	PWY-2161	folate polyglutamylation
APT62_03730	PWY-2201	folate transformations I
APT62_03730	PWY-3841	folate transformations II
APT62_03760	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
APT62_03760	PWY-6164	3-dehydroquinate biosynthesis I
APT62_03760	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
APT62_03765	PWY-6164	3-dehydroquinate biosynthesis I
APT62_03770	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APT62_03825	PWY-4261	glycerol degradation I
APT62_03830	PWY-1281	sulfoacetaldehyde degradation I
APT62_03830	PWY-5482	pyruvate fermentation to acetate II
APT62_03830	PWY-5485	pyruvate fermentation to acetate IV
APT62_03830	PWY-5497	purine nucleobases degradation II (anaerobic)
APT62_03830	PWY-6637	sulfolactate degradation II
APT62_03850	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT62_03850	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT62_03850	PWY-7953	APT62_03850
APT62_03870	PWY-5692	allantoin degradation to glyoxylate II
APT62_03870	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
APT62_03885	PWY-6832	2-aminoethylphosphonate degradation II
APT62_03890	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
APT62_03900	PWY-5697	allantoin degradation to ureidoglycolate I (urea producing)
APT62_03900	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
APT62_03940	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
APT62_03940	PWY-6174	mevalonate pathway II (archaea)
APT62_03940	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
APT62_03940	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
APT62_03940	PWY-7102	bisabolene biosynthesis
APT62_03940	PWY-7391	isoprene biosynthesis II (engineered)
APT62_03940	PWY-7524	mevalonate pathway III (archaea)
APT62_03940	PWY-7560	methylerythritol phosphate pathway II
APT62_03940	PWY-922	mevalonate pathway I
APT62_03945	PWY-7391	isoprene biosynthesis II (engineered)
APT62_03945	PWY-922	mevalonate pathway I
APT62_03950	PWY-7391	isoprene biosynthesis II (engineered)
APT62_03950	PWY-922	mevalonate pathway I
APT62_03955	PWY-6174	mevalonate pathway II (archaea)
APT62_03955	PWY-7391	isoprene biosynthesis II (engineered)
APT62_03955	PWY-922	mevalonate pathway I
APT62_03960	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
APT62_04140	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT62_04140	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT62_04205	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APT62_04205	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
APT62_04205	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APT62_04205	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APT62_04225	PWY-7980	APT62_04225
APT62_04230	PWY-7980	APT62_04230
APT62_04320	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
APT62_04320	PWY-2201	folate transformations I
APT62_04320	PWY-3841	folate transformations II
APT62_04320	PWY-5030	L-histidine degradation III
APT62_04320	PWY-5497	purine nucleobases degradation II (anaerobic)
APT62_04320	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
APT62_04320	PWY-7909	APT62_04320
APT62_04350	PWY-2781	<i>cis</i>-zeatin biosynthesis
APT62_04375	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APT62_04375	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
APT62_04375	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APT62_04375	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APT62_04405	PWY-6349	CDP-archaeol biosynthesis
APT62_04430	PWY-4081	glutathione redox reactions I
APT62_04480	PWY-5386	methylglyoxal degradation I
APT62_04490	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
APT62_04490	PWY-622	starch biosynthesis
APT62_04490	PWY-7900	APT62_04490
APT62_04495	PWY-622	starch biosynthesis
APT62_04495	PWY-7902	APT62_04495
APT62_04505	PWY-622	starch biosynthesis
APT62_04510	PWY-2941	L-lysine biosynthesis II
APT62_04510	PWY-2942	L-lysine biosynthesis III
APT62_04510	PWY-5097	L-lysine biosynthesis VI
APT62_04510	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
APT62_04510	PWY-6559	spermidine biosynthesis II
APT62_04510	PWY-6562	norspermidine biosynthesis
APT62_04510	PWY-7153	grixazone biosynthesis
APT62_04510	PWY-7977	APT62_04510
APT62_04515	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
APT62_04585	PWY-7199	pyrimidine deoxyribonucleosides salvage
APT62_04605	PWY-1622	formaldehyde assimilation I (serine pathway)
APT62_04605	PWY-181	photorespiration
APT62_04605	PWY-2161	folate polyglutamylation
APT62_04605	PWY-2201	folate transformations I
APT62_04605	PWY-3661	glycine betaine degradation I
APT62_04605	PWY-3661-1	glycine betaine degradation II (mammalian)
APT62_04605	PWY-3841	folate transformations II
APT62_04605	PWY-5497	purine nucleobases degradation II (anaerobic)
APT62_04610	PWY-7183	pyrimidine nucleobases salvage I
APT62_04615	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT62_04615	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT62_04615	PWY-7953	APT62_04615
APT62_04625	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
APT62_04625	PWY-6167	flavin biosynthesis II (archaea)
APT62_04625	PWY-6168	flavin biosynthesis III (fungi)
APT62_04625	PWY-7863	APT62_04625
APT62_04700	PWY-3841	folate transformations II
APT62_04700	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APT62_04700	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT62_04700	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APT62_04700	PWY-7199	pyrimidine deoxyribonucleosides salvage
APT62_04700	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APT62_04705	PWY-3841	folate transformations II
APT62_04705	PWY-6614	tetrahydrofolate biosynthesis
APT62_04780	PWY-7805	APT62_04780
APT62_04780	PWY-7807	APT62_04780
APT62_04795	PWY-4261	glycerol degradation I
APT62_04800	PWY-4261	glycerol degradation I
APT62_04800	PWY-6118	glycerol-3-phosphate shuttle
APT62_04800	PWY-6952	glycerophosphodiester degradation
APT62_04855	PWY-3461	L-tyrosine biosynthesis II
APT62_04855	PWY-3462	L-phenylalanine biosynthesis II
APT62_04855	PWY-6120	L-tyrosine biosynthesis III
APT62_04855	PWY-6627	salinosporamide A biosynthesis
APT62_04855	PWY-7626	bacilysin biosynthesis
APT62_04865	PWY-6317	galactose degradation I (Leloir pathway)
APT62_04865	PWY-6527	stachyose degradation
APT62_04870	PWY-3821	galactose degradation III
APT62_04870	PWY-6317	galactose degradation I (Leloir pathway)
APT62_04870	PWY-6527	stachyose degradation
APT62_04910	PWY-6527	stachyose degradation
APT62_04940	PWY-6123	inosine-5'-phosphate biosynthesis I
APT62_04940	PWY-6124	inosine-5'-phosphate biosynthesis II
APT62_04940	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APT62_04940	PWY-7234	inosine-5'-phosphate biosynthesis III
APT62_05045	PWY-6605	adenine and adenosine salvage II
APT62_05045	PWY-6610	adenine and adenosine salvage IV
APT62_05045	PWY-7805	APT62_05045
APT62_05045	PWY-7807	APT62_05045
APT62_05050	PWY-7805	APT62_05050
APT62_05050	PWY-7807	APT62_05050
APT62_05090	PWY-7039	phosphatidate metabolism, as a signaling molecule
APT62_05090	PWY-7817	APT62_05090
APT62_05150	PWY-5686	UMP biosynthesis
APT62_05150	PWY-7790	APT62_05150
APT62_05150	PWY-7791	APT62_05150
APT62_05155	PWY-5686	UMP biosynthesis
APT62_05155	PWY-7790	APT62_05155
APT62_05155	PWY-7791	APT62_05155
APT62_05160	PWY-7183	pyrimidine nucleobases salvage I
APT62_05185	PWY-7883	APT62_05185
APT62_05240	PWY-4381	fatty acid biosynthesis initiation I
APT62_05240	PWY-5743	3-hydroxypropanoate cycle
APT62_05240	PWY-5744	glyoxylate assimilation
APT62_05240	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APT62_05240	PWY-6722	candicidin biosynthesis
APT62_05245	PWY-4381	fatty acid biosynthesis initiation I
APT62_05245	PWY-5743	3-hydroxypropanoate cycle
APT62_05245	PWY-5744	glyoxylate assimilation
APT62_05245	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APT62_05245	PWY-6722	candicidin biosynthesis
APT62_05255	PWY-5971	palmitate biosynthesis II (bacteria and plants)
APT62_05255	PWY-5973	<i>cis</i>-vaccenate biosynthesis
APT62_05255	PWY-5989	stearate biosynthesis II (bacteria and plants)
APT62_05255	PWY-5994	palmitate biosynthesis I (animals and fungi)
APT62_05255	PWY-6113	superpathway of mycolate biosynthesis
APT62_05255	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
APT62_05255	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APT62_05255	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APT62_05255	PWY-7663	gondoate biosynthesis (anaerobic)
APT62_05255	PWY-7664	oleate biosynthesis IV (anaerobic)
APT62_05255	PWY-7858	APT62_05255
APT62_05255	PWYG-321	mycolate biosynthesis
APT62_05270	PWY-5367	petroselinate biosynthesis
APT62_05270	PWY-5971	palmitate biosynthesis II (bacteria and plants)
APT62_05270	PWY-5973	<i>cis</i>-vaccenate biosynthesis
APT62_05270	PWY-5989	stearate biosynthesis II (bacteria and plants)
APT62_05270	PWY-5994	palmitate biosynthesis I (animals and fungi)
APT62_05270	PWY-6113	superpathway of mycolate biosynthesis
APT62_05270	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
APT62_05270	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APT62_05270	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APT62_05270	PWY-7663	gondoate biosynthesis (anaerobic)
APT62_05270	PWY-7664	oleate biosynthesis IV (anaerobic)
APT62_05270	PWY-7858	APT62_05270
APT62_05270	PWYG-321	mycolate biosynthesis
APT62_05275	PWY-4381	fatty acid biosynthesis initiation I
APT62_05275	PWY-6799	fatty acid biosynthesis (plant mitochondria)
APT62_05275	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APT62_05280	PWY-723	alkylnitronates degradation
APT62_05340	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT62_05400	PWY-1042	glycolysis IV (plant cytosol)
APT62_05400	PWY-1622	formaldehyde assimilation I (serine pathway)
APT62_05400	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APT62_05400	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT62_05400	PWY-5723	Rubisco shunt
APT62_05400	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT62_05400	PWY-6886	1-butanol autotrophic biosynthesis
APT62_05400	PWY-6901	superpathway of glucose and xylose degradation
APT62_05400	PWY-7003	glycerol degradation to butanol
APT62_05400	PWY-7124	ethylene biosynthesis V (engineered)
APT62_05400	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
APT62_05405	PWY-1042	glycolysis IV (plant cytosol)
APT62_05405	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APT62_05405	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT62_05405	PWY-5723	Rubisco shunt
APT62_05405	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT62_05405	PWY-6886	1-butanol autotrophic biosynthesis
APT62_05405	PWY-6901	superpathway of glucose and xylose degradation
APT62_05405	PWY-7003	glycerol degradation to butanol
APT62_05405	PWY-7124	ethylene biosynthesis V (engineered)
APT62_05405	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
APT62_05410	PWY-1042	glycolysis IV (plant cytosol)
APT62_05410	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT62_05410	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT62_05410	PWY-7003	glycerol degradation to butanol
APT62_05415	PWY-1042	glycolysis IV (plant cytosol)
APT62_05415	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT62_05415	PWY-6886	1-butanol autotrophic biosynthesis
APT62_05415	PWY-6901	superpathway of glucose and xylose degradation
APT62_05415	PWY-7003	glycerol degradation to butanol
APT62_05420	PWY-1042	glycolysis IV (plant cytosol)
APT62_05420	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT62_05420	PWY-6901	superpathway of glucose and xylose degradation
APT62_05420	PWY-7003	glycerol degradation to butanol
APT62_05595	PWY-7884	APT62_05595
APT62_05660	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT62_05665	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT62_05665	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APT62_05670	PWY-4981	L-proline biosynthesis II (from arginine)
APT62_05670	PWY-4984	urea cycle
APT62_05670	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APT62_05675	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT62_05675	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APT62_05680	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT62_05680	PWY-5686	UMP biosynthesis
APT62_05680	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APT62_05680	PWY-7790	APT62_05680
APT62_05680	PWY-7791	APT62_05680
APT62_05735	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APT62_05735	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
APT62_05735	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APT62_05735	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APT62_05745	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APT62_05745	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APT62_05745	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APT62_05745	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APT62_05745	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT62_05745	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT62_05745	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
APT62_05745	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
APT62_05750	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APT62_05750	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APT62_05750	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APT62_05750	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APT62_05750	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT62_05750	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT62_05750	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
APT62_05750	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
APT62_05805	PWY-3961	phosphopantothenate biosynthesis II
APT62_05895	PWY-7193	pyrimidine ribonucleosides salvage I
APT62_05940	PWY-7887	APT62_05940
APT62_05940	PWY-7892	APT62_05940
APT62_05950	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
APT62_05955	PWY-6840	homoglutathione biosynthesis
APT62_05955	PWY-7255	ergothioneine biosynthesis I (bacteria)
APT62_05970	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APT62_05970	PWY-5723	Rubisco shunt
APT62_06045	PWY-5482	pyruvate fermentation to acetate II
APT62_06045	PWY-5485	pyruvate fermentation to acetate IV
APT62_06045	PWY-5497	purine nucleobases degradation II (anaerobic)
APT62_06220	PWY-3801	sucrose degradation II (sucrose synthase)
APT62_06220	PWY-5054	sorbitol biosynthesis I
APT62_06220	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
APT62_06220	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APT62_06220	PWY-5659	GDP-mannose biosynthesis
APT62_06220	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT62_06220	PWY-621	sucrose degradation III (sucrose invertase)
APT62_06220	PWY-622	starch biosynthesis
APT62_06220	PWY-6981	chitin biosynthesis
APT62_06220	PWY-6992	1,5-anhydrofructose degradation
APT62_06220	PWY-7238	sucrose biosynthesis II
APT62_06220	PWY-7347	sucrose biosynthesis III
APT62_06220	PWY-7385	1,3-propanediol biosynthesis (engineered)
APT62_06240	PWY-101	photosynthesis light reactions
APT62_06300	PWY-2941	L-lysine biosynthesis II
APT62_06300	PWY-2942	L-lysine biosynthesis III
APT62_06300	PWY-5097	L-lysine biosynthesis VI
APT62_06345	PWY-7205	CMP phosphorylation
APT62_06410	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APT62_06415	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APT62_06420	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APT62_06425	PWY-1042	glycolysis IV (plant cytosol)
APT62_06425	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APT62_06425	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT62_06425	PWY-5723	Rubisco shunt
APT62_06425	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT62_06425	PWY-6886	1-butanol autotrophic biosynthesis
APT62_06425	PWY-6901	superpathway of glucose and xylose degradation
APT62_06425	PWY-7003	glycerol degradation to butanol
APT62_06425	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
APT62_06425	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APT62_06430	PWY-1042	glycolysis IV (plant cytosol)
APT62_06430	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APT62_06430	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT62_06430	PWY-7385	1,3-propanediol biosynthesis (engineered)
APT62_06440	PWY-6700	queuosine biosynthesis
APT62_06530	PWY-5269	cardiolipin biosynthesis II
APT62_06530	PWY-5668	cardiolipin biosynthesis I
APT62_06530	PWY-7817	APT62_06530
APT62_06555	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
APT62_06555	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
APT62_06555	PWY-6936	seleno-amino acid biosynthesis
APT62_06555	PWY-702	L-methionine biosynthesis II
APT62_06600	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
APT62_06615	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
APT62_06615	PWY-6153	autoinducer AI-2 biosynthesis I
APT62_06615	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
APT62_06675	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APT62_06695	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APT62_06695	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
APT62_06695	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APT62_06695	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APT62_06700	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT62_06700	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT62_06705	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APT62_06705	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APT62_06705	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APT62_06765	PWY-5381	pyridine nucleotide cycling (plants)
APT62_06765	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
APT62_06765	PWY-7761	APT62_06765
APT62_06785	PWY-702	L-methionine biosynthesis II
APT62_06855	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APT62_06855	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
APT62_06855	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APT62_06855	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT62_06855	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
APT62_06855	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APT62_06855	PWY-7205	CMP phosphorylation
APT62_06855	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APT62_06855	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT62_06855	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
APT62_06855	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT62_06855	PWY-7224	purine deoxyribonucleosides salvage
APT62_06855	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
APT62_06855	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
APT62_06885	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
APT62_06885	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
APT62_06885	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
APT62_06930	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
APT62_06930	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
APT62_07030	PWY-7851	APT62_07030
APT62_07095	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
APT62_07095	PWY-6148	tetrahydromethanopterin biosynthesis
APT62_07095	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
APT62_07095	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
APT62_07095	PWY-7852	APT62_07095
APT62_07095	PWY-7853	APT62_07095
APT62_07100	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
APT62_07100	PWY-6148	tetrahydromethanopterin biosynthesis
APT62_07100	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
APT62_07100	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
APT62_07105	PWY-6614	tetrahydrofolate biosynthesis
APT62_07110	PWY-5663	tetrahydrobiopterin biosynthesis I
APT62_07110	PWY-5664	tetrahydrobiopterin biosynthesis II
APT62_07110	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
APT62_07110	PWY-6703	preQ<sub>0</sub> biosynthesis
APT62_07110	PWY-6983	tetrahydrobiopterin biosynthesis III
APT62_07110	PWY-7442	drosopterin and aurodrosopterin biosynthesis
APT62_07110	PWY-7852	APT62_07110
APT62_07115	PWY-2161	folate polyglutamylation
APT62_07150	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
APT62_07150	PWY-5491	diethylphosphate degradation
APT62_07165	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT62_07165	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT62_07165	PWY-7953	APT62_07165
APT62_07270	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APT62_07270	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
APT62_07270	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APT62_07270	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APT62_07445	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
APT62_07445	PWY-6164	3-dehydroquinate biosynthesis I
APT62_07445	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
APT62_07575	PWY-3341	L-proline biosynthesis III
APT62_07575	PWY-4981	L-proline biosynthesis II (from arginine)
APT62_07575	PWY-6344	L-ornithine degradation II (Stickland reaction)
APT62_07630	PWY-3821	galactose degradation III
APT62_07630	PWY-6317	galactose degradation I (Leloir pathway)
APT62_07630	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
APT62_07630	PWY-6527	stachyose degradation
APT62_07630	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
APT62_07630	PWY-7344	UDP-D-galactose biosynthesis
APT62_07640	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
APT62_07910	PWY-6906	chitin derivatives degradation
APT62_07910	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
APT62_07910	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
APT62_07945	PWY-6910	hydroxymethylpyrimidine salvage
APT62_07945	PWY-7356	thiamin salvage IV (yeast)
APT62_07945	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
APT62_07950	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
APT62_07950	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
APT62_07950	PWY-6897	thiamin salvage II
APT62_07950	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
APT62_07950	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
APT62_07950	PWY-7356	thiamin salvage IV (yeast)
APT62_07950	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
APT62_07955	PWY-6897	thiamin salvage II
APT62_07955	PWY-7356	thiamin salvage IV (yeast)
APT62_07955	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
APT62_07965	PWY-7511	protein ubiquitylation
APT62_08025	PWY-6167	flavin biosynthesis II (archaea)
APT62_08025	PWY-6168	flavin biosynthesis III (fungi)
APT62_08030	PWY-6167	flavin biosynthesis II (archaea)
APT62_08030	PWY-6168	flavin biosynthesis III (fungi)
APT62_08030	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
APT62_08030	PWY-7991	APT62_08030
APT62_08035	PWY-6167	flavin biosynthesis II (archaea)
APT62_08035	PWY-6168	flavin biosynthesis III (fungi)
APT62_08035	PWY-7980	APT62_08035
APT62_08040	PWY-7991	APT62_08040
APT62_08105	PWY-1042	glycolysis IV (plant cytosol)
APT62_08105	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APT62_08105	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT62_08105	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT62_08105	PWY-7385	1,3-propanediol biosynthesis (engineered)
APT62_08110	PWY-5971	palmitate biosynthesis II (bacteria and plants)
APT62_08110	PWY-5973	<i>cis</i>-vaccenate biosynthesis
APT62_08110	PWY-5989	stearate biosynthesis II (bacteria and plants)
APT62_08110	PWY-6113	superpathway of mycolate biosynthesis
APT62_08110	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
APT62_08110	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APT62_08110	PWY-7663	gondoate biosynthesis (anaerobic)
APT62_08110	PWY-7664	oleate biosynthesis IV (anaerobic)
APT62_08110	PWY-7858	APT62_08110
APT62_08110	PWYG-321	mycolate biosynthesis
APT62_08115	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APT62_08115	PWY-6416	quinate degradation II
APT62_08115	PWY-6707	gallate biosynthesis
APT62_08175	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APT62_08360	PWY-6599	guanine and guanosine salvage II
APT62_08360	PWY-6609	adenine and adenosine salvage III
APT62_08360	PWY-6610	adenine and adenosine salvage IV
APT62_08360	PWY-6620	guanine and guanosine salvage
APT62_08395	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
APT62_08400	PWY-5481	pyruvate fermentation to lactate
APT62_08400	PWY-6901	superpathway of glucose and xylose degradation
APT62_08415	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APT62_08465	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
APT62_08465	PWY-5743	3-hydroxypropanoate cycle
APT62_08465	PWY-5744	glyoxylate assimilation
APT62_08465	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APT62_08465	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT62_08465	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APT62_08465	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APT62_08575	PWY-6012	acyl carrier protein metabolism I
APT62_08575	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
APT62_08575	PWY-6289	petrobactin biosynthesis
APT62_08585	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT62_08585	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT62_08585	PWY-7953	APT62_08585
APT62_08590	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT62_08590	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT62_08590	PWY-7953	APT62_08590
APT62_08610	PWY-6936	seleno-amino acid biosynthesis
APT62_08610	PWY-7274	D-cycloserine biosynthesis
APT62_08610	PWY-7870	APT62_08610
APT62_08615	PWY-6936	seleno-amino acid biosynthesis
APT62_08635	PWY-7980	APT62_08635
APT62_08640	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT62_08640	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT62_08640	PWY-7953	APT62_08640
APT62_08645	PWY-1042	glycolysis IV (plant cytosol)
APT62_08645	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APT62_08645	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT62_08645	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT62_08645	PWY-7385	1,3-propanediol biosynthesis (engineered)
APT62_08675	PWY-5686	UMP biosynthesis
APT62_08675	PWY-7790	APT62_08675
APT62_08675	PWY-7791	APT62_08675
APT62_08680	PWY-5686	UMP biosynthesis
APT62_08680	PWY-7790	APT62_08680
APT62_08680	PWY-7791	APT62_08680
APT62_08690	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
APT62_08690	PWY-6153	autoinducer AI-2 biosynthesis I
APT62_08690	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
APT62_08705	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
APT62_08705	PWY-6153	autoinducer AI-2 biosynthesis I
APT62_08705	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
APT62_08710	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
APT62_08710	PWY-7177	UTP and CTP dephosphorylation II
APT62_08710	PWY-7185	UTP and CTP dephosphorylation I
APT62_08725	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
APT62_08725	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
APT62_08810	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
APT62_08810	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
APT62_08860	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APT62_08860	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APT62_08860	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT62_08860	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
APT62_08860	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APT62_08860	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APT62_08880	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
APT62_08880	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
APT62_09180	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APT62_09180	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APT62_09180	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APT62_09180	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APT62_09180	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT62_09180	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT62_09180	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
APT62_09180	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
APT62_09185	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APT62_09185	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APT62_09185	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APT62_09185	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APT62_09185	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT62_09185	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT62_09185	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
APT62_09185	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
APT62_09200	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APT62_09290	PWY-3861	mannitol degradation II
APT62_09290	PWY-3881	mannitol biosynthesis
APT62_09290	PWY-5659	GDP-mannose biosynthesis
APT62_09290	PWY-6992	1,5-anhydrofructose degradation
APT62_09290	PWY-7456	mannan degradation
APT62_09290	PWY-7586	&beta;-1,4-D-mannosyl-<i>N</i>-acetyl-D-glucosamine degradation
APT62_09290	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
APT62_09320	PWY-5097	L-lysine biosynthesis VI
APT62_09375	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT62_09375	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT62_09375	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT62_09400	PWY-5057	L-valine degradation II
APT62_09400	PWY-5076	L-leucine degradation III
APT62_09400	PWY-5078	L-isoleucine degradation II
APT62_09400	PWY-5101	L-isoleucine biosynthesis II
APT62_09400	PWY-5103	L-isoleucine biosynthesis III
APT62_09400	PWY-5104	L-isoleucine biosynthesis IV
APT62_09400	PWY-5108	L-isoleucine biosynthesis V
APT62_09400	PWY-7767	APT62_09400
APT62_09460	PWY-6899	base-degraded thiamin salvage
APT62_09460	PWY-7356	thiamin salvage IV (yeast)
APT62_09495	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APT62_09510	PWY-7805	APT62_09510
APT62_09510	PWY-7807	APT62_09510
