locus-tag	class	description
BOQ57_00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
BOQ57_00025	COG0230	Belongs to the bacterial ribosomal protein bL34 family
BOQ57_00030	COG0594	ribonuclease P activity
BOQ57_00035	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
BOQ57_00040	COG0706	membrane insertase activity
BOQ57_00045	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
BOQ57_00060	COG1120	ATPase activity
BOQ57_00065	COG4615	Cyclic peptide transporter
BOQ57_00070	COG4774	siderophore transport
BOQ57_00075	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BOQ57_00080	COG0445	tRNA wobble uridine modification
BOQ57_00085	COG0357	Ribosomal RNA small subunit methyltransferase G
BOQ57_00090	COG1192	Involved in chromosome partitioning
BOQ57_00095	COG1475	DNA binding
BOQ57_00105	COG0356	it plays a direct role in the translocation of protons across the membrane
BOQ57_00115	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
BOQ57_00120	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
BOQ57_00125	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
BOQ57_00130	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
BOQ57_00135	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
BOQ57_00140	COG0355	proton-transporting ATP synthase activity, rotational mechanism
BOQ57_00145	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
BOQ57_00150	COG4452	Inner membrane protein CreD
BOQ57_00160	COG2205	protein histidine kinase activity
BOQ57_00165	COG0745	RESPONSE REGULATOR receiver
BOQ57_00170	COG1349	DNA-binding transcription factor activity
BOQ57_00175	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BOQ57_00180	COG2771	luxR family
BOQ57_00190	COG0811	peptide transport
BOQ57_00195	COG0811	peptide transport
BOQ57_00200	COG0848	biopolymer transport protein
BOQ57_00205	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
BOQ57_00250	COG0402	S-adenosylhomocysteine deaminase activity
BOQ57_00255	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
BOQ57_00265	COG3165	ubiquinone biosynthetic process from chorismate
BOQ57_00270	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
BOQ57_00280	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
BOQ57_00285	COG0805	protein transport
BOQ57_00290	COG0084	hydrolase, TatD family'
BOQ57_00310	COG0742	ribosomal rna small subunit methyltransferase
BOQ57_00320	COG0248	Ppx GppA phosphatase
BOQ57_00325	COG0513	Belongs to the DEAD box helicase family
BOQ57_00330	COG3118	belongs to the thioredoxin family
BOQ57_00335	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
BOQ57_00345	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
BOQ57_00370	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BOQ57_00400	COG0559	Belongs to the binding-protein-dependent transport system permease family
BOQ57_00410	COG1609	Transcriptional regulator
BOQ57_00425	COG2188	Transcriptional regulator
BOQ57_00430	COG3604	Transcriptional regulator
BOQ57_00435	COG1773	rubredoxin
BOQ57_00435	COG0426	domain, Protein
BOQ57_00440	COG0446	pyridine nucleotide-disulphide oxidoreductase
BOQ57_00450	COG0348	domain, Protein
BOQ57_00455	COG0814	amino acid
BOQ57_00475	COG0583	DNA-binding transcription factor activity
BOQ57_00485	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
BOQ57_00495	COG0751	glycine-tRNA ligase activity
BOQ57_00500	COG0752	glycyl-tRNA synthetase alpha subunit
BOQ57_00505	COG2818	Glycosylase
BOQ57_00515	COG2885	chlorophyll binding
BOQ57_00520	COG0251	oxidation-reduction process
BOQ57_00525	COG0425	Belongs to the sulfur carrier protein TusA family
BOQ57_00540	COG2205	protein histidine kinase activity
BOQ57_00545	COG0745	RESPONSE REGULATOR receiver
BOQ57_00550	COG0183	Belongs to the thiolase family
BOQ57_00555	COG1250	3-hydroxyacyl-CoA dehydrogenase
BOQ57_00555	COG1024	Enoyl-CoA hydratase
BOQ57_00560	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BOQ57_00565	COG0006	proline dipeptidase activity
BOQ57_00570	COG1739	Uncharacterized protein family UPF0029
BOQ57_00575	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
BOQ57_00580	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
BOQ57_00625	COG0583	DNA-binding transcription factor activity
BOQ57_00650	COG0668	transmembrane transport
BOQ57_00655	COG1309	transcriptional regulator
BOQ57_00660	COG0756	dUTP diphosphatase activity
BOQ57_00665	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
BOQ57_00670	COG2003	Belongs to the UPF0758 family
BOQ57_00675	COG0227	Belongs to the bacterial ribosomal protein bL28 family
BOQ57_00680	COG0267	Belongs to the bacterial ribosomal protein bL33 family
BOQ57_00690	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
BOQ57_00695	COG2990	Protein conserved in bacteria
BOQ57_00700	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
BOQ57_00705	COG0859	PFAM glycosyl transferase family 9
BOQ57_00710	COG0463	Glycosyl transferase, family 2
BOQ57_00715	COG0859	PFAM glycosyl transferase family 9
BOQ57_00720	COG1519	Transferase
BOQ57_00740	COG1609	Transcriptional regulator
BOQ57_00745	COG0604	alcohol dehydrogenase
BOQ57_00755	COG1580	Controls the rotational direction of flagella during chemotaxis
BOQ57_00760	COG3161	chorismate lyase activity
BOQ57_00765	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
BOQ57_00770	COG2937	Belongs to the GPAT DAPAT family
BOQ57_00775	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
BOQ57_00795	COG0534	Mate efflux family protein
BOQ57_00800	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
BOQ57_00805	COG2205	protein histidine kinase activity
BOQ57_00810	COG0745	RESPONSE REGULATOR receiver
BOQ57_00820	COG1045	serine acetyltransferase
BOQ57_00830	COG3074	FtsZ-dependent cytokinesis
BOQ57_00835	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
BOQ57_00845	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BOQ57_00845	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BOQ57_00850	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
BOQ57_00890	COG1609	Transcriptional regulator
BOQ57_00895	COG3250	beta-galactosidase activity
BOQ57_00900	COG2731	YhcH YjgK YiaL family protein
BOQ57_00905	COG0531	amino acid
BOQ57_00910	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BOQ57_00915	COG0531	amino acid
BOQ57_00920	COG0385	Bile acid
BOQ57_00925	COG1262	PFAM Formylglycine-generating sulfatase enzyme
BOQ57_00945	COG0583	DNA-binding transcription factor activity
BOQ57_00980	COG0210	DNA helicase
BOQ57_01005	COG0583	DNA-binding transcription factor activity
BOQ57_01060	COG1280	lysine exporter protein (LysE YggA)
BOQ57_01065	COG2391	methyltransferase activity
BOQ57_01070	COG0840	transmembrane signaling receptor activity
BOQ57_01080	COG1280	lysine exporter protein (LysE YggA)
BOQ57_01090	COG2962	Rard protein
BOQ57_01100	COG1012	belongs to the aldehyde dehydrogenase family
BOQ57_01105	COG1396	sequence-specific DNA binding
BOQ57_01120	COG0519	Catalyzes the synthesis of GMP from XMP
BOQ57_01120	COG0518	GMP synthase (glutamine-hydrolyzing) activity
BOQ57_01125	COG0686	Belongs to the AlaDH PNT family
BOQ57_01130	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BOQ57_01150	COG1322	Protein conserved in bacteria
BOQ57_01155	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
BOQ57_01160	COG0569	domain protein
BOQ57_01165	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
BOQ57_01165	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BOQ57_01170	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
BOQ57_01175	COG0242	peptide deformylase activity
BOQ57_01185	COG0758	DNA mediated transformation
BOQ57_01190	COG2922	Belongs to the Smg family
BOQ57_01195	COG0551	DNA topoisomerase type I activity
BOQ57_01205	COG0009	L-threonylcarbamoyladenylate synthase
BOQ57_01210	COG0408	coproporphyrinogen oxidase activity
BOQ57_01215	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
BOQ57_01225	COG0218	Necessary for normal cell division and for the maintenance of normal septation
BOQ57_01240	COG3078	GTPase activator activity
BOQ57_01250	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BOQ57_01255	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
BOQ57_01260	COG2204	response regulator
BOQ57_01265	COG3852	Histidine kinase
BOQ57_01275	COG0174	glutamine synthetase
BOQ57_01285	COG1295	ribonuclease BN
BOQ57_01290	COG1295	ribonuclease BN
BOQ57_01295	COG1490	D-aminoacyl-tRNA deacylase activity
BOQ57_01305	COG0456	acetyltransferase
BOQ57_01315	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
BOQ57_01320	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BOQ57_01325	COG2610	gluconate transmembrane transporter activity
BOQ57_01330	COG3265	gluconokinase activity
BOQ57_01335	COG0129	dihydroxy-acid dehydratase activity
BOQ57_01340	COG0800	Aldolase
BOQ57_01345	COG1609	Transcriptional regulator
BOQ57_01355	COG4942	peptidase
BOQ57_01360	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
BOQ57_01365	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BOQ57_01370	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
BOQ57_01375	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
BOQ57_01380	COG0316	Belongs to the HesB IscA family
BOQ57_01380	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
BOQ57_01385	COG1040	competence protein
BOQ57_01390	COG0596	Alpha beta hydrolase
BOQ57_01410	COG2183	response to ionizing radiation
BOQ57_01415	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BOQ57_01420	COG0745	RESPONSE REGULATOR receiver
BOQ57_01435	COG0051	transcription antitermination factor activity, RNA binding
BOQ57_01440	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
BOQ57_01445	COG0088	Forms part of the polypeptide exit tunnel
BOQ57_01450	COG0089	rRNA binding
BOQ57_01455	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
BOQ57_01460	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
BOQ57_01465	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
BOQ57_01470	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
BOQ57_01475	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
BOQ57_01480	COG0255	Belongs to the universal ribosomal protein uL29 family
BOQ57_01485	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
BOQ57_01490	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
BOQ57_01495	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
BOQ57_01500	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
BOQ57_01505	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
BOQ57_01510	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
BOQ57_01515	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
BOQ57_01520	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
BOQ57_01525	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
BOQ57_01530	COG1841	ribosomal large subunit assembly
BOQ57_01535	COG0200	Binds to the 23S rRNA
BOQ57_01540	COG0201	protein transport
BOQ57_01545	COG0257	Belongs to the bacterial ribosomal protein bL36 family
BOQ57_01550	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
BOQ57_01555	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
BOQ57_01560	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
BOQ57_01565	COG0202	RNA polymerase activity
BOQ57_01570	COG0203	ribosomal protein L17
BOQ57_01630	COG2249	NAD(P)H dehydrogenase (quinone) activity
BOQ57_01635	COG0583	DNA-binding transcription factor activity
BOQ57_01640	COG4221	oxidoreductase activity
BOQ57_01655	COG1770	oligopeptidase
BOQ57_01670	COG3714	YhhN family
BOQ57_01695	COG1301	dicarboxylic acid transport
BOQ57_01705	COG2095	MarC family integral membrane protein
BOQ57_01725	COG0741	lytic transglycosylase activity
BOQ57_01730	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BOQ57_01755	COG0742	ribosomal rna small subunit methyltransferase
BOQ57_01760	COG0552	protein localization to endoplasmic reticulum
BOQ57_01765	COG2884	Cell division ATP-binding protein ftsE
BOQ57_01770	COG2177	Part of the ABC transporter FtsEX involved in
BOQ57_01780	COG0288	reversible hydration of carbon dioxide
BOQ57_01785	COG2188	Transcriptional regulator
BOQ57_01790	COG1228	amidohydrolase
BOQ57_01795	COG0010	Belongs to the arginase family
BOQ57_01800	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
BOQ57_01805	COG2986	histidine ammonia-lyase
BOQ57_01810	COG0387	Pfam Sodium calcium exchanger
BOQ57_01815	COG2200	EAL domain
BOQ57_01820	COG2200	EAL domain
BOQ57_01820	COG2199	diguanylate cyclase activity
BOQ57_01865	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BOQ57_01870	COG1459	type II secretion system
BOQ57_01915	COG1077	Cell shape determining protein MreB Mrl
BOQ57_01920	COG1792	Involved in formation and maintenance of cell shape
BOQ57_01925	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
BOQ57_01930	COG0424	maF-like protein
BOQ57_01935	COG1530	ribonuclease E activity
BOQ57_01940	COG3164	Protein of unknown function
BOQ57_01950	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BOQ57_01955	COG0312	modulator of DNA gyrase
BOQ57_01975	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BOQ57_01975	COG1263	PTS System
BOQ57_01980	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
BOQ57_01995	COG0477	Major facilitator Superfamily
BOQ57_02005	COG3437	response regulator, receiver
BOQ57_02010	COG5002	protein histidine kinase activity
BOQ57_02010	COG2205	protein histidine kinase activity
BOQ57_02010	COG0784	Response regulator, receiver
BOQ57_02015	COG2172	sigma factor antagonist activity
BOQ57_02040	COG3700	Belongs to the class B bacterial acid phosphatase family
BOQ57_02045	COG2321	neutral zinc metallopeptidase
BOQ57_02055	COG1639	'signal transduction protein
BOQ57_02075	COG0189	ligase activity
BOQ57_02080	COG1114	Component of the transport system for branched-chain amino acids
BOQ57_02090	COG0745	RESPONSE REGULATOR receiver
BOQ57_02115	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
BOQ57_02120	COG0352	thiamine-phosphate diphosphorylase activity
BOQ57_02125	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
BOQ57_02135	COG2022	thiamine diphosphate biosynthetic process
BOQ57_02140	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
BOQ57_02150	COG3417	Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b)
BOQ57_02170	COG3706	GGDEF domain
BOQ57_02175	COG0814	amino acid
BOQ57_02180	COG3932	Exopolysaccharide synthesis, ExoD
BOQ57_02200	COG1733	regulation of RNA biosynthetic process
BOQ57_02240	COG1494	fructose-1,6-bisphosphatase
BOQ57_02255	COG2959	enzyme of heme biosynthesis
BOQ57_02265	COG0181	hydroxymethylbilane synthase activity
BOQ57_02270	COG3072	Adenylate cyclase
BOQ57_02275	COG0400	carboxylic ester hydrolase activity
BOQ57_02280	COG1965	Belongs to the frataxin family
BOQ57_02290	COG0019	diaminopimelate decarboxylase activity
BOQ57_02295	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
BOQ57_02310	COG1011	Hydrolase
BOQ57_02330	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
BOQ57_02335	COG0561	phosphatase activity
BOQ57_02350	COG0842	Transport permease protein
BOQ57_02350	COG1129	ABC transporter
BOQ57_02360	COG1058	Belongs to the CinA family
BOQ57_02360	COG1546	Belongs to the CinA family
BOQ57_02365	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
BOQ57_02370	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
BOQ57_02380	COG1522	sequence-specific DNA binding
BOQ57_02385	COG1368	sulfuric ester hydrolase activity
BOQ57_02405	COG1285	pathogenesis
BOQ57_02425	COG4221	oxidoreductase activity
BOQ57_02445	COG1979	alcohol dehydrogenase
BOQ57_02455	COG2873	o-acetylhomoserine
BOQ57_02460	COG4533	DNA binding
BOQ57_02475	COG5380	lipid catabolic process
BOQ57_02480	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
BOQ57_02495	COG2949	membrane
BOQ57_02500	COG3291	Pkd domain containing protein
BOQ57_02510	COG3539	Fimbrial protein
BOQ57_02520	COG3188	usher protein
BOQ57_02525	COG3121	Chaperone
BOQ57_02530	COG3539	Fimbrial protein
BOQ57_02545	COG0318	PFAM AMP-dependent synthetase and ligase
BOQ57_02550	COG1441	menaquinone biosynthetic process
BOQ57_02555	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
BOQ57_02560	COG0596	Alpha beta hydrolase
BOQ57_02565	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
BOQ57_02570	COG1169	isochorismate synthase
BOQ57_02575	COG1575	Belongs to the MenA family. Type 1 subfamily
BOQ57_02600	COG0513	Belongs to the DEAD box helicase family
BOQ57_02605	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
BOQ57_02610	COG1988	membrane-bound metal-dependent
BOQ57_02625	COG1671	Belongs to the UPF0178 family
BOQ57_02650	COG3263	regulation of cellular component size
BOQ57_02655	COG3722	fumarate hydratase activity
BOQ57_02660	COG0246	Mannitol dehydrogenase
BOQ57_02665	COG2213	PTS system mannitol-specific
BOQ57_02665	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
BOQ57_02675	COG1309	transcriptional regulator
BOQ57_02680	COG4776	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
BOQ57_02690	COG3916	Acyl-homoserine-lactone synthase
BOQ57_02695	COG2771	luxR family
BOQ57_02710	COG3133	Outer membrane lipoprotein
BOQ57_02715	COG0456	acetyltransferase
BOQ57_02740	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
BOQ57_02750	COG3031	protein transport across the cell outer membrane
BOQ57_02760	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BOQ57_02765	COG1459	type II secretion system
BOQ57_02770	COG2165	general secretion pathway protein
BOQ57_02780	COG2165	general secretion pathway protein
BOQ57_02785	COG4795	General secretion pathway protein
BOQ57_02790	COG3156	type II secretion system protein K
BOQ57_02800	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
BOQ57_02815	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
BOQ57_02820	COG1011	Hydrolase
BOQ57_02825	COG0494	nUDIX hydrolase
BOQ57_02830	COG1218	3'(2'),5'-bisphosphate nucleotidase
BOQ57_02835	COG0814	amino acid
BOQ57_02840	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BOQ57_02845	COG3708	Transcriptional regulator
BOQ57_02845	COG2207	Transcriptional regulator
BOQ57_02855	COG0626	cystathionine gamma-synthase activity
BOQ57_02860	COG0527	aspartate kinase activity
BOQ57_02860	COG0460	homoserine dehydrogenase
BOQ57_02865	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
BOQ57_02875	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
BOQ57_02880	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
BOQ57_02890	COG0137	argininosuccinate synthase activity
BOQ57_02895	COG0165	Argininosuccinate lyase
BOQ57_02920	COG0110	maltose O-acetyltransferase activity
BOQ57_02925	COG3174	membrane
BOQ57_02930	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
BOQ57_02940	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
BOQ57_02945	COG4208	sulfate ABC transporter
BOQ57_02950	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
BOQ57_02955	COG0583	DNA-binding transcription factor activity
BOQ57_02960	COG3397	chitin binding
BOQ57_02965	COG0840	transmembrane signaling receptor activity
BOQ57_03000	COG0793	Belongs to the peptidase S41A family
BOQ57_03000	COG4946	Tricorn protease homolog
BOQ57_03020	COG1328	CTP reductase activity
BOQ57_03025	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
BOQ57_03040	COG1448	Aminotransferase
BOQ57_03080	COG0513	Belongs to the DEAD box helicase family
BOQ57_03095	COG3568	Endonuclease Exonuclease Phosphatase
BOQ57_03100	COG0840	transmembrane signaling receptor activity
BOQ57_03115	COG3112	Uncharacterised protein family (UPF0231)
BOQ57_03125	COG3835	regulator
BOQ57_03130	COG2610	gluconate transmembrane transporter activity
BOQ57_03135	COG1929	Belongs to the glycerate kinase type-1 family
BOQ57_03150	COG0583	DNA-binding transcription factor activity
BOQ57_03155	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
BOQ57_03170	COG0347	Belongs to the P(II) protein family
BOQ57_03175	COG1840	ABC-type Fe3 transport system, periplasmic component
BOQ57_03185	COG3842	ATPase activity
BOQ57_03190	COG2837	iron assimilation
BOQ57_03195	COG1438	arginine binding
BOQ57_03200	COG1126	abc transporter atp-binding protein
BOQ57_03205	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BOQ57_03210	COG4215	(ABC) transporter
BOQ57_03215	COG4160	amino acid transport
BOQ57_03220	COG0039	L-malate dehydrogenase activity
BOQ57_03230	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
BOQ57_03235	COG1017	nitric oxide dioxygenase activity
BOQ57_03235	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
BOQ57_03240	COG1959	2 iron, 2 sulfur cluster binding
BOQ57_03245	COG4536	flavin adenine dinucleotide binding
BOQ57_03250	COG4137	Cytochrome C assembly protein
BOQ57_03255	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
BOQ57_03260	COG0228	four-way junction DNA binding
BOQ57_03265	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
BOQ57_03270	COG0336	Belongs to the RNA methyltransferase TrmD family
BOQ57_03275	COG0335	large ribosomal subunit rRNA binding
BOQ57_03285	COG3066	DNA modification
BOQ57_03295	COG1051	belongs to the nudix hydrolase family
BOQ57_03305	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
BOQ57_03310	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
BOQ57_03315	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
BOQ57_03325	COG0583	DNA-binding transcription factor activity
BOQ57_03330	COG0640	Transcriptional regulator
BOQ57_03335	COG0268	Binds directly to 16S ribosomal RNA
BOQ57_03340	COG0728	peptidoglycan biosynthetic process
BOQ57_03345	COG0196	riboflavin kinase activity
BOQ57_03350	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
BOQ57_03355	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
BOQ57_03360	COG1047	Peptidyl-prolyl cis-trans
BOQ57_03365	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
BOQ57_03400	COG3039	Transposase
BOQ57_03420	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
BOQ57_03420	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BOQ57_03435	COG1854	S-ribosylhomocysteine lyase activity
BOQ57_03440	COG3706	GGDEF domain
BOQ57_03445	COG0557	exoribonuclease II activity
BOQ57_03450	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BOQ57_03460	COG2153	protein acetylation
BOQ57_03475	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
BOQ57_03480	COG1914	H( )-stimulated, divalent metal cation uptake system
BOQ57_03485	COG0360	Binds together with S18 to 16S ribosomal RNA
BOQ57_03490	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
BOQ57_03495	COG0359	binds to the 23S rRNA
BOQ57_03500	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
BOQ57_03520	COG1238	metal cluster binding
BOQ57_03525	COG0612	Peptidase, M16
BOQ57_03530	COG2918	glutathione biosynthetic process
BOQ57_03540	COG1022	Amp-dependent synthetase and ligase
BOQ57_03550	COG0456	acetyltransferase
BOQ57_03560	COG0714	Associated with various cellular activities
BOQ57_03570	COG5001	Diguanylate cyclase
BOQ57_03570	COG3300	MHYT domain
BOQ57_03575	COG0745	RESPONSE REGULATOR receiver
BOQ57_03575	COG3706	GGDEF domain
BOQ57_03605	COG1902	pentaerythritol trinitrate reductase activity
BOQ57_03615	COG2852	Protein conserved in bacteria
BOQ57_03625	COG2957	Belongs to the agmatine deiminase family
BOQ57_03630	COG0154	amidase activity
BOQ57_03655	COG0513	Belongs to the DEAD box helicase family
BOQ57_03675	COG1912	Pfam S-adenosyl-l-methionine hydroxide adenosyltransferase
BOQ57_03680	COG1858	cytochrome C peroxidase
BOQ57_03705	COG2070	2-Nitropropane dioxygenase
BOQ57_03740	COG2816	NAD+ diphosphatase activity
BOQ57_03745	COG2205	protein histidine kinase activity
BOQ57_03750	COG0745	RESPONSE REGULATOR receiver
BOQ57_03755	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BOQ57_03760	COG0577	efflux transmembrane transporter activity
BOQ57_03760	COG1136	(ABC) transporter
BOQ57_03765	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BOQ57_03770	COG1126	abc transporter atp-binding protein
BOQ57_03775	COG0765	amino acid transport
BOQ57_03780	COG0765	amino acid transport
BOQ57_03785	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
BOQ57_03790	COG1505	serine-type exopeptidase activity
BOQ57_03810	COG1028	Short-chain dehydrogenase reductase Sdr
BOQ57_03815	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
BOQ57_03830	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BOQ57_03835	COG4991	sh3 domain protein
BOQ57_03850	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
BOQ57_03855	COG1940	carbohydrate kinase activity
BOQ57_03860	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
BOQ57_03865	COG0126	phosphoglycerate kinase activity
BOQ57_03875	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BOQ57_03915	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
BOQ57_03925	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
BOQ57_03930	COG1595	DNA-templated transcription, initiation
BOQ57_03935	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
BOQ57_03950	COG0481	GTPase activity
BOQ57_03955	COG0681	Belongs to the peptidase S26 family
BOQ57_03960	COG0571	ribonuclease III activity
BOQ57_03970	COG1381	Involved in DNA repair and RecF pathway recombination
BOQ57_03975	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
BOQ57_03990	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
BOQ57_03995	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
BOQ57_04000	COG3716	PTS system mannose fructose sorbose family IID component
BOQ57_04010	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BOQ57_04015	COG2222	sugar isomerase
BOQ57_04025	COG1349	DNA-binding transcription factor activity
BOQ57_04030	COG3023	N-Acetylmuramoyl-L-alanine amidase
BOQ57_04035	COG4807	Protein conserved in bacteria
BOQ57_04045	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BOQ57_04050	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BOQ57_04055	COG3956	TIGRFAM MazG family protein
BOQ57_04060	COG0504	CTP synthase activity
BOQ57_04065	COG0148	phosphopyruvate hydratase activity
BOQ57_04070	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
BOQ57_04075	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
BOQ57_04085	COG0585	pseudouridine synthase activity
BOQ57_04090	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
BOQ57_04095	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
BOQ57_04100	COG1238	metal cluster binding
BOQ57_04105	COG4942	peptidase
BOQ57_04105	COG1388	LysM domain
BOQ57_04115	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
BOQ57_04120	COG0828	Belongs to the bacterial ribosomal protein bS21 family
BOQ57_04125	COG1610	YqeY-like protein
BOQ57_04130	COG0358	DNA primase activity
BOQ57_04135	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BOQ57_04160	COG0151	Belongs to the GarS family
BOQ57_04165	COG0138	bifunctional purine biosynthesis protein purh
BOQ57_04180	COG3036	rescue of stalled ribosome
BOQ57_04185	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BOQ57_04190	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
BOQ57_04200	COG0673	inositol 2-dehydrogenase activity
BOQ57_04210	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BOQ57_04215	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BOQ57_04230	COG0477	Major facilitator Superfamily
BOQ57_04240	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
BOQ57_04245	COG1027	Aspartate ammonia-lyase
BOQ57_04250	COG3030	protein affecting phage T7 exclusion by the F plasmid
BOQ57_04260	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
BOQ57_04265	COG0459	protein refolding
BOQ57_04275	COG5001	Diguanylate cyclase
BOQ57_04275	COG3300	MHYT domain
BOQ57_04285	COG0564	pseudouridine synthase activity
BOQ57_04290	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
BOQ57_04320	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BOQ57_04330	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
BOQ57_04335	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
BOQ57_04340	COG1178	ABC-type Fe3 transport system permease component
BOQ57_04345	COG4143	(ABC) transporter
BOQ57_04360	COG0066	3-isopropylmalate dehydratase activity
BOQ57_04365	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
BOQ57_04370	COG0473	3-isopropylmalate dehydrogenase activity
BOQ57_04375	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
BOQ57_04385	COG0671	phosphoesterase, PA-phosphatase related
BOQ57_04390	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
BOQ57_04395	COG0028	Belongs to the TPP enzyme family
BOQ57_04405	COG0857	belongs to the CobB CobQ family
BOQ57_04405	COG0280	phosphate acetyltransferase
BOQ57_04410	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
BOQ57_04415	COG3092	negative regulation of chromosome organization
BOQ57_04420	COG3013	Belongs to the UPF0304 family
BOQ57_04425	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
BOQ57_04430	COG2716	regulation of RNA biosynthetic process
BOQ57_04440	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
BOQ57_04445	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
BOQ57_04460	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
BOQ57_04480	COG5002	protein histidine kinase activity
BOQ57_04480	COG0784	Response regulator, receiver
BOQ57_04480	COG2198	Histidine kinase
BOQ57_04505	COG0840	transmembrane signaling receptor activity
BOQ57_04515	COG1464	Belongs to the NlpA lipoprotein family
BOQ57_04520	COG2011	ABC-type metal ion transport system permease component
BOQ57_04525	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
BOQ57_04545	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
BOQ57_04550	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
BOQ57_04550	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
BOQ57_04555	COG0802	atpase or kinase
BOQ57_04565	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
BOQ57_04570	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
BOQ57_04575	COG1923	regulation of RNA biosynthetic process
BOQ57_04580	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
BOQ57_04585	COG0330	HflC and HflK could
BOQ57_04590	COG0330	HflC and HflK could
BOQ57_04595	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
BOQ57_04600	COG0142	geranyltranstransferase activity
BOQ57_04605	COG0261	This protein binds to 23S rRNA in the presence of protein L20
BOQ57_04610	COG0211	Belongs to the bacterial ribosomal protein bL27 family
BOQ57_04615	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
BOQ57_04625	COG0318	PFAM AMP-dependent synthetase and ligase
BOQ57_04640	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
BOQ57_04645	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BOQ57_04655	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
BOQ57_04665	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
BOQ57_04670	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
BOQ57_04680	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
BOQ57_04685	COG3178	'Phosphotransferase
BOQ57_04690	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
BOQ57_04695	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
BOQ57_04700	COG2252	PERMEase
BOQ57_04710	COG0488	(ABC) transporter
BOQ57_04725	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
BOQ57_04730	COG0741	lytic transglycosylase activity
BOQ57_04750	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
BOQ57_04755	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
BOQ57_04760	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
BOQ57_04785	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BOQ57_04795	COG3721	Heme iron utilization protein
BOQ57_04800	COG0748	coenzyme F420 binding
BOQ57_04820	COG4771	TonB-dependent receptor
BOQ57_04830	COG2814	Major facilitator Superfamily
BOQ57_04835	COG3655	Transcriptional regulator
BOQ57_04845	COG2205	protein histidine kinase activity
BOQ57_04845	COG2202	Pas domain
BOQ57_04860	COG3397	chitin binding
BOQ57_04865	COG2226	methyltransferase
BOQ57_04870	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BOQ57_04875	COG1765	OsmC-like protein
BOQ57_04890	COG3954	Phosphoribulokinase
BOQ57_04895	COG2076	Multidrug Resistance protein
BOQ57_04900	COG2076	Multidrug Resistance protein
BOQ57_04905	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
BOQ57_04910	COG0726	polysaccharide deacetylase
BOQ57_04915	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BOQ57_04915	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
BOQ57_04920	COG0463	Glycosyl transferase, family 2
BOQ57_04925	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
BOQ57_04935	COG3089	Belongs to the UPF0270 family
BOQ57_04940	COG2203	Gaf domain
BOQ57_04940	COG3706	GGDEF domain
BOQ57_04940	COG4251	negative regulation of phosphorylation
BOQ57_04940	COG5001	Diguanylate cyclase
BOQ57_04945	COG0429	hydrolase of the alpha beta-hydrolase fold
BOQ57_04950	COG0835	chemotaxis
BOQ57_04950	COG0784	Response regulator, receiver
BOQ57_04960	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
BOQ57_04965	COG1047	Peptidyl-prolyl cis-trans
BOQ57_04970	COG2900	Belongs to the SlyX family
BOQ57_04980	COG0545	Peptidyl-prolyl cis-trans isomerase
BOQ57_04985	COG2204	response regulator
BOQ57_05005	COG0737	Belongs to the 5'-nucleotidase family
BOQ57_05010	COG2200	EAL domain
BOQ57_05020	COG0305	Participates in initiation and elongation during chromosome replication
BOQ57_05025	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
BOQ57_05030	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
BOQ57_05040	COG2203	Gaf domain
BOQ57_05040	COG2200	EAL domain
BOQ57_05040	COG2199	diguanylate cyclase activity
BOQ57_05055	COG3188	usher protein
BOQ57_05065	COG2197	response regulator
BOQ57_05075	COG1484	DNA-dependent DNA replication
BOQ57_05080	COG4584	PFAM Integrase catalytic
BOQ57_05110	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
BOQ57_05115	COG2201	protein-glutamate methylesterase activity
BOQ57_05120	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
BOQ57_05130	COG0840	transmembrane signaling receptor activity
BOQ57_05135	COG0835	chemotaxis
BOQ57_05145	COG0643	Histidine kinase
BOQ57_05145	COG2198	Histidine kinase
BOQ57_05155	COG0745	RESPONSE REGULATOR receiver
BOQ57_05160	COG0840	transmembrane signaling receptor activity
BOQ57_05175	COG1280	lysine exporter protein (LysE YggA)
BOQ57_05185	COG0826	peptidase U32
BOQ57_05195	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
BOQ57_05210	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
BOQ57_05235	COG0300	oxidoreductase activity
BOQ57_05245	COG0840	transmembrane signaling receptor activity
BOQ57_05275	COG0077	Prephenate dehydratase
BOQ57_05275	COG1605	Chorismate mutase
BOQ57_05305	COG3272	Protein of unknown function (DUF1722)
BOQ57_05310	COG0789	Transcriptional regulator
BOQ57_05315	COG0415	Belongs to the DNA photolyase family
BOQ57_05325	COG4221	oxidoreductase activity
BOQ57_05340	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
BOQ57_05365	COG0783	Belongs to the Dps family
BOQ57_05370	COG1151	hydroxylamine reductase activity
BOQ57_05380	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
BOQ57_05385	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BOQ57_05385	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
BOQ57_05395	COG2771	luxR family
BOQ57_05410	COG3501	Rhs element vgr protein
BOQ57_05455	COG0693	protein deglycase activity
BOQ57_05460	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
BOQ57_05465	COG1666	GTP binding
BOQ57_05470	COG3248	Nucleoside-binding outer membrane protein
BOQ57_05475	COG2211	Major facilitator Superfamily
BOQ57_05485	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
BOQ57_05495	COG2813	Specifically methylates the guanine in position
BOQ57_05500	COG0271	Belongs to the BolA IbaG family
BOQ57_05505	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
BOQ57_05510	COG1805	sodium ion transport
BOQ57_05515	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
BOQ57_05520	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
BOQ57_05525	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
BOQ57_05530	COG2871	sodium ion transport
BOQ57_05535	COG1477	protein flavinylation
BOQ57_05550	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
BOQ57_05555	COG0840	transmembrane signaling receptor activity
BOQ57_05560	COG0583	DNA-binding transcription factor activity
BOQ57_05570	COG2363	Small membrane protein
BOQ57_05575	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
BOQ57_05585	COG0473	3-isopropylmalate dehydrogenase activity
BOQ57_05590	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BOQ57_05595	COG1611	Belongs to the LOG family
BOQ57_05600	COG3706	GGDEF domain
BOQ57_05610	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
BOQ57_05610	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
BOQ57_05620	COG5595	Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
BOQ57_05645	COG3098	single-species biofilm formation
BOQ57_05650	COG0564	pseudouridine synthase activity
BOQ57_05660	COG4580	involved in the transport of maltose and maltodextrins
BOQ57_05670	COG1263	PTS System
BOQ57_05670	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BOQ57_05680	COG2171	N-acyltransferase activity
BOQ57_05685	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
BOQ57_05690	COG0024	Methionine aminopeptidase
BOQ57_05695	COG0052	Belongs to the universal ribosomal protein uS2 family
BOQ57_05700	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
BOQ57_05705	COG0528	UMP kinase activity
BOQ57_05710	COG0233	cytoplasmic translational termination
BOQ57_05720	COG0575	Belongs to the CDS family
BOQ57_05725	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
BOQ57_05730	COG0750	zinc metalloprotease
BOQ57_05745	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BOQ57_05750	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
BOQ57_05755	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BOQ57_05760	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BOQ57_05765	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
BOQ57_05775	COG0825	malonyl-CoA metabolic process
BOQ57_05780	COG3710	Transcriptional regulator
BOQ57_05785	COG0531	amino acid
BOQ57_05790	COG1982	Orn Lys Arg decarboxylase major
BOQ57_05795	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
BOQ57_05810	COG0814	amino acid
BOQ57_05815	COG1234	tRNA 3'-trailer cleavage
BOQ57_05825	COG1073	alpha beta
BOQ57_05830	COG1073	alpha beta
BOQ57_05840	COG0531	amino acid
BOQ57_05850	COG0488	(ABC) transporter
BOQ57_05860	COG3590	peptidase
BOQ57_05865	COG0037	tRNA processing
BOQ57_05870	COG3706	GGDEF domain
BOQ57_05905	COG0366	Alpha amylase catalytic
BOQ57_05920	COG0463	Glycosyl transferase, family 2
BOQ57_05935	COG2989	Protein conserved in bacteria
BOQ57_05940	COG3108	Peptidase M15
BOQ57_05950	COG2860	membrane
BOQ57_05960	COG1196	nuclear chromosome segregation
BOQ57_05965	COG3115	cell septum assembly
BOQ57_05970	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
BOQ57_05980	COG1328	CTP reductase activity
BOQ57_05985	COG0602	queuosine metabolic process
BOQ57_06015	COG1566	PFAM secretion protein HlyD family protein
BOQ57_06020	COG1846	Transcriptional regulator
BOQ57_06035	COG0281	malic enzyme
BOQ57_06040	COG3290	protein histidine kinase activity
BOQ57_06045	COG4565	transcriptional regulatory protein
BOQ57_06050	COG0697	spore germination
BOQ57_06060	COG1012	belongs to the aldehyde dehydrogenase family
BOQ57_06065	COG3284	Transcriptional regulator
BOQ57_06070	COG1960	acyl-CoA dehydrogenase activity
BOQ57_06075	COG1804	L-carnitine dehydratase bile acid-inducible protein F
BOQ57_06080	COG0346	lactoylglutathione lyase activity
BOQ57_06085	COG0745	RESPONSE REGULATOR receiver
BOQ57_06090	COG5002	protein histidine kinase activity
BOQ57_06100	COG4783	chaperone-mediated protein folding
BOQ57_06115	COG3142	Participates in the control of copper homeostasis
BOQ57_06125	COG0545	Peptidyl-prolyl cis-trans isomerase
BOQ57_06130	COG1131	(ABC) transporter
BOQ57_06150	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
BOQ57_06160	COG0678	peroxiredoxin activity
BOQ57_06170	COG0019	diaminopimelate decarboxylase activity
BOQ57_06175	COG1115	amino acid carrier protein
BOQ57_06180	COG0095	Lipoate-protein ligase
BOQ57_06185	COG2233	PERMEase
BOQ57_06190	COG3706	GGDEF domain
BOQ57_06190	COG0745	RESPONSE REGULATOR receiver
BOQ57_06200	COG0534	Mate efflux family protein
BOQ57_06210	COG0281	malic enzyme
BOQ57_06240	COG0733	neurotransmitter:sodium symporter activity
BOQ57_06245	COG1752	Esterase of the alpha-beta hydrolase superfamily
BOQ57_06250	COG2199	diguanylate cyclase activity
BOQ57_06250	COG2203	Gaf domain
BOQ57_06255	COG1566	PFAM secretion protein HlyD family protein
BOQ57_06260	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BOQ57_06270	COG1032	radical SAM domain protein
BOQ57_06290	COG3152	Membrane
BOQ57_06310	COG0673	inositol 2-dehydrogenase activity
BOQ57_06320	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
BOQ57_06325	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
BOQ57_06330	COG0739	heme binding
BOQ57_06330	COG1196	nuclear chromosome segregation
BOQ57_06330	COG0741	lytic transglycosylase activity
BOQ57_06335	COG0366	Alpha amylase catalytic
BOQ57_06355	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BOQ57_06365	COG0788	formyltetrahydrofolate deformylase activity
BOQ57_06370	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
BOQ57_06380	COG3118	belongs to the thioredoxin family
BOQ57_06385	COG2091	lysine biosynthetic process via aminoadipic acid
BOQ57_06390	COG0791	NLP P60 protein
BOQ57_06395	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
BOQ57_06410	COG1376	ErfK ybiS ycfS ynhG family protein
BOQ57_06410	COG1388	LysM domain
BOQ57_06420	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BOQ57_06425	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BOQ57_06430	COG0745	RESPONSE REGULATOR receiver
BOQ57_06435	COG5002	protein histidine kinase activity
BOQ57_06455	COG4869	propanediol catabolic process
BOQ57_06460	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
BOQ57_06465	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
BOQ57_06470	COG1882	Formate acetyltransferase
BOQ57_06475	COG1012	belongs to the aldehyde dehydrogenase family
BOQ57_06475	COG1454	alcohol dehydrogenase
BOQ57_06485	COG1012	belongs to the aldehyde dehydrogenase family
BOQ57_06485	COG1454	alcohol dehydrogenase
BOQ57_06490	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
BOQ57_06495	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
BOQ57_06500	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
BOQ57_06520	COG0583	DNA-binding transcription factor activity
BOQ57_06525	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
BOQ57_06530	COG0243	molybdopterin cofactor binding
BOQ57_06540	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
BOQ57_06550	COG1960	acyl-CoA dehydrogenase activity
BOQ57_06555	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BOQ57_06565	COG0469	pyruvate kinase activity
BOQ57_06570	COG1737	Transcriptional regulator
BOQ57_06585	COG0745	RESPONSE REGULATOR receiver
BOQ57_06590	COG2274	protein secretion by the type I secretion system
BOQ57_06600	COG2274	protein secretion by the type I secretion system
BOQ57_06610	COG2994	toxin metabolic process
BOQ57_06615	COG3064	Membrane
BOQ57_06615	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
BOQ57_06615	COG1073	alpha beta
BOQ57_06625	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
BOQ57_06640	COG1677	Flagellar hook-basal body complex protein FliE
BOQ57_06650	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
BOQ57_06700	COG1987	bacterial-type flagellum assembly
BOQ57_06705	COG1684	flagellar biosynthetic protein fliR
BOQ57_06715	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
BOQ57_06725	COG0455	bacterial-type flagellum organization
BOQ57_06740	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
BOQ57_06745	COG2198	Histidine kinase
BOQ57_06745	COG0643	Histidine kinase
BOQ57_06750	COG2201	protein-glutamate methylesterase activity
BOQ57_06755	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
BOQ57_06760	COG1360	Flagellar Motor Protein
BOQ57_06765	COG1192	Involved in chromosome partitioning
BOQ57_06775	COG0835	chemotaxis
BOQ57_06790	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BOQ57_06795	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BOQ57_06800	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BOQ57_06805	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
BOQ57_06810	COG1138	Cytochrome C-type biogenesis protein
BOQ57_06815	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BOQ57_06820	COG3088	subunit of a heme lyase
BOQ57_06820	COG4235	cytochrome complex assembly
BOQ57_06825	COG3088	subunit of a heme lyase
BOQ57_06825	COG4235	cytochrome complex assembly
BOQ57_06840	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
BOQ57_06845	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
BOQ57_06845	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BOQ57_06860	COG0259	pyridoxamine-phosphate oxidase activity
BOQ57_06865	COG0625	glutathione transferase activity
BOQ57_06875	COG3153	acetyltransferase
BOQ57_06885	COG2850	peptidyl-arginine hydroxylation
BOQ57_06890	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
BOQ57_06895	COG2915	High frequency lysogenization protein hflD homolog
BOQ57_06900	COG0482	sulfurtransferase activity
BOQ57_06910	COG1187	pseudouridine synthase activity
BOQ57_06920	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BOQ57_06930	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BOQ57_06930	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BOQ57_06930	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BOQ57_06950	COG0456	acetyltransferase
BOQ57_06960	COG0789	Transcriptional regulator
BOQ57_06970	COG1609	Transcriptional regulator
BOQ57_06975	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BOQ57_06975	COG1263	PTS System
BOQ57_06980	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
BOQ57_06990	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BOQ57_07005	COG2207	Transcriptional regulator
BOQ57_07010	COG0538	isocitrate dehydrogenase activity
BOQ57_07015	COG3048	D-serine ammonia-lyase activity
BOQ57_07020	COG0583	DNA-binding transcription factor activity
BOQ57_07025	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
BOQ57_07040	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
BOQ57_07045	COG2867	negative regulation of translational initiation
BOQ57_07055	COG0702	epimerase
BOQ57_07060	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BOQ57_07065	COG1454	alcohol dehydrogenase
BOQ57_07075	COG0564	pseudouridine synthase activity
BOQ57_07105	COG1280	lysine exporter protein (LysE YggA)
BOQ57_07115	COG3263	regulation of cellular component size
BOQ57_07125	COG3263	regulation of cellular component size
BOQ57_07130	COG1876	peptidase activity
BOQ57_07135	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BOQ57_07140	COG1393	Belongs to the ArsC family
BOQ57_07145	COG0583	DNA-binding transcription factor activity
BOQ57_07155	COG3069	C4-dicarboxylate transmembrane transporter activity
BOQ57_07170	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
BOQ57_07175	COG0017	Asparaginyl-tRNA synthetase
BOQ57_07195	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
BOQ57_07200	COG0156	8-amino-7-oxononanoate synthase activity
BOQ57_07205	COG2226	methyltransferase
BOQ57_07205	COG1073	alpha beta
BOQ57_07210	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
BOQ57_07215	COG0501	Belongs to the peptidase M48B family
BOQ57_07225	COG0633	Ferredoxin
BOQ57_07225	COG3217	Mosc domain protein beta barrel domain protein
BOQ57_07225	COG0633	Ferredoxin
BOQ57_07225	COG3217	Mosc domain protein beta barrel domain protein
BOQ57_07235	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
BOQ57_07235	COG1013	pyruvate-flavodoxin oxidoreductase activity
BOQ57_07235	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
BOQ57_07235	COG0674	pyruvate-flavodoxin oxidoreductase activity
BOQ57_07255	COG0534	Mate efflux family protein
BOQ57_07295	COG1309	transcriptional regulator
BOQ57_07310	COG0791	NLP P60 protein
BOQ57_07320	COG0583	DNA-binding transcription factor activity
BOQ57_07325	COG0450	alkyl hydroperoxide reductase
BOQ57_07345	COG0500	methyltransferase
BOQ57_07350	COG4106	trans-aconitate 2-methyltransferase activity
BOQ57_07360	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
BOQ57_07365	COG0217	transcriptional regulatory protein
BOQ57_07370	COG2194	sulfuric ester hydrolase activity
BOQ57_07375	COG1940	carbohydrate kinase activity
BOQ57_07375	COG1846	Transcriptional regulator
BOQ57_07380	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
BOQ57_07385	COG0363	glucosamine-6-phosphate deaminase activity
BOQ57_07390	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BOQ57_07390	COG2190	(PTS) system
BOQ57_07390	COG1263	PTS System
BOQ57_07400	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BOQ57_07405	COG0735	belongs to the Fur family
BOQ57_07415	COG0716	FMN binding
BOQ57_07430	COG0596	Alpha beta hydrolase
BOQ57_07435	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
BOQ57_07440	COG0033	Phosphoglucomutase
BOQ57_07450	COG1846	Transcriptional regulator
BOQ57_07465	COG2951	lytic endotransglycosylase activity
BOQ57_07470	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
BOQ57_07475	COG4136	ATPase activity
BOQ57_07485	COG4134	Bacterial extracellular solute-binding protein
BOQ57_07495	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BOQ57_07505	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
BOQ57_07510	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BOQ57_07520	COG0729	surface antigen
BOQ57_07525	COG2911	Protein conserved in bacteria
BOQ57_07545	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
BOQ57_07555	COG0741	lytic transglycosylase activity
BOQ57_07570	COG1607	acyl-coa hydrolase
BOQ57_07580	COG3021	interspecies interaction between organisms
BOQ57_07585	COG1388	LysM domain
BOQ57_07585	COG0741	lytic transglycosylase activity
BOQ57_07590	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BOQ57_07595	COG2226	methyltransferase
BOQ57_07600	COG0328	RNA-DNA hybrid ribonuclease activity
BOQ57_07605	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BOQ57_07615	COG3437	response regulator, receiver
BOQ57_07615	COG0784	Response regulator, receiver
BOQ57_07620	COG1960	acyl-CoA dehydrogenase activity
BOQ57_07625	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
BOQ57_07630	COG0121	glutamine amidotransferase
BOQ57_07660	COG2197	response regulator
BOQ57_07665	COG3850	Histidine kinase
BOQ57_07670	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
BOQ57_07675	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
BOQ57_07675	COG1149	4fe-4S ferredoxin, iron-sulfur binding domain protein
BOQ57_07685	COG0243	molybdopterin cofactor binding
BOQ57_07690	COG0437	4 iron, 4 sulfur cluster binding
BOQ57_07695	COG0348	domain, Protein
BOQ57_07705	COG3005	denitrification pathway
BOQ57_07710	COG0521	Mo-molybdopterin cofactor biosynthetic process
BOQ57_07715	COG0315	cyclic pyranopterin monophosphate synthase activity
BOQ57_07720	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
BOQ57_07725	COG0314	molybdopterin synthase activity
BOQ57_07740	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
BOQ57_07745	COG2267	carboxylic ester hydrolase activity
BOQ57_07750	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
BOQ57_07760	COG0302	gtp cyclohydrolase
BOQ57_07765	COG0840	transmembrane signaling receptor activity
BOQ57_07770	COG2759	Belongs to the formate--tetrahydrofolate ligase family
BOQ57_07780	COG0583	DNA-binding transcription factor activity
BOQ57_07810	COG2195	Cleaves the N-terminal amino acid of tripeptides
BOQ57_07825	COG1166	arginine decarboxylase activity
BOQ57_07845	COG0814	amino acid
BOQ57_07855	COG3681	Belongs to the UPF0597 family
BOQ57_07860	COG2964	Protein conserved in bacteria
BOQ57_07870	COG1403	HNH endonuclease
BOQ57_07880	COG0346	lactoylglutathione lyase activity
BOQ57_07895	COG1187	pseudouridine synthase activity
BOQ57_07905	COG2807	transmembrane transport
BOQ57_07915	COG0583	DNA-binding transcription factor activity
BOQ57_07920	COG2271	Major facilitator Superfamily
BOQ57_07945	COG2979	Protein of unknown function (DUF533)
BOQ57_07955	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BOQ57_07960	COG1271	oxidase subunit
BOQ57_07965	COG1294	oxidase, subunit
BOQ57_07975	COG2814	Major facilitator Superfamily
BOQ57_07980	COG0656	L-ascorbic acid biosynthetic process
BOQ57_08005	COG0583	DNA-binding transcription factor activity
BOQ57_08010	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
BOQ57_08015	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
BOQ57_08020	COG2271	Major facilitator Superfamily
BOQ57_08025	COG1349	DNA-binding transcription factor activity
BOQ57_08035	COG0584	glycerophosphoryl diester phosphodiesterase
BOQ57_08040	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BOQ57_08045	COG0287	Prephenate dehydrogenase
BOQ57_08045	COG1605	Chorismate mutase
BOQ57_08050	COG0583	DNA-binding transcription factor activity
BOQ57_08055	COG3085	chromosome segregation
BOQ57_08060	COG4574	serine-type endopeptidase inhibitor activity
BOQ57_08080	COG1770	oligopeptidase
BOQ57_08085	COG4771	TonB-dependent receptor
BOQ57_08090	COG3083	sulfuric ester hydrolase activity
BOQ57_08095	COG3082	Protein of unknown function (DUF1414)
BOQ57_08100	COG3081	Nucleoid-associated protein
BOQ57_08110	COG1175	transmembrane transport
BOQ57_08120	COG3842	ATPase activity
BOQ57_08145	COG0425	Belongs to the sulfur carrier protein TusA family
BOQ57_08150	COG4783	chaperone-mediated protein folding
BOQ57_08160	COG1393	Belongs to the ArsC family
BOQ57_08175	COG3124	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP
BOQ57_08180	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
BOQ57_08185	COG2431	L-lysine efflux transmembrane transporter activity
BOQ57_08195	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BOQ57_08200	COG4215	(ABC) transporter
BOQ57_08215	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
BOQ57_08225	COG0446	pyridine nucleotide-disulphide oxidoreductase
BOQ57_08230	COG2373	Large extracellular alpha-helical protein
BOQ57_08235	COG4953	penicillin-binding protein 1C
BOQ57_08245	COG0301	tRNA thio-modification
BOQ57_08245	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BOQ57_08270	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BOQ57_08300	COG1083	cytidylyl-transferase
BOQ57_08320	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
BOQ57_08325	COG2089	acid synthase
BOQ57_08335	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
BOQ57_08355	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
BOQ57_08375	COG0483	inositol monophosphate 1-phosphatase activity
BOQ57_08385	COG0625	glutathione transferase activity
BOQ57_08390	COG2814	Major facilitator Superfamily
BOQ57_08410	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BOQ57_08415	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BOQ57_08420	COG0404	The glycine cleavage system catalyzes the degradation of glycine
BOQ57_08425	COG0509	glycine decarboxylation via glycine cleavage system
BOQ57_08430	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
BOQ57_08430	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
BOQ57_08460	COG0798	PFAM Bile acid sodium symporter
BOQ57_08465	COG1393	Belongs to the ArsC family
BOQ57_08485	COG3634	alkyl hydroperoxide reductase activity
BOQ57_08490	COG0450	alkyl hydroperoxide reductase
BOQ57_08495	COG0517	IMP dehydrogenase activity
BOQ57_08500	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
BOQ57_08505	COG0343	queuine tRNA-ribosyltransferase activity
BOQ57_08510	COG1862	Preprotein translocase
BOQ57_08515	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BOQ57_08520	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BOQ57_08565	COG1104	cysteine desulfurase activity
BOQ57_08570	COG0822	iron-sulfur transferase activity
BOQ57_08580	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
BOQ57_08585	COG0443	Heat shock 70 kDa protein
BOQ57_08590	COG0633	Ferredoxin
BOQ57_08600	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
BOQ57_08605	COG0105	UTP biosynthetic process
BOQ57_08610	COG0820	rRNA (adenine-C2-)-methyltransferase activity
BOQ57_08625	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
BOQ57_08630	COG0124	histidyl-tRNA synthetase
BOQ57_08635	COG2976	Protein conserved in bacteria
BOQ57_08640	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BOQ57_08645	COG1160	GTP binding
BOQ57_08650	COG1645	bacterial-type flagellum-dependent swarming motility
BOQ57_08660	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
BOQ57_08665	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
BOQ57_08665	COG0047	phosphoribosylformylglycinamidine synthase activity
BOQ57_08670	COG1007	ATP synthesis coupled electron transport
BOQ57_08675	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BOQ57_08685	COG0713	ATP synthesis coupled electron transport
BOQ57_08690	COG0839	Belongs to the complex I subunit 6 family
BOQ57_08695	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BOQ57_08700	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
BOQ57_08705	COG1034	ATP synthesis coupled electron transport
BOQ57_08720	COG0649	NAD binding
BOQ57_08720	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BOQ57_08725	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BOQ57_08730	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BOQ57_08735	COG1360	Flagellar Motor Protein
BOQ57_08740	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
BOQ57_08760	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
BOQ57_08780	COG0724	RNA recognition motif
BOQ57_08785	COG4989	oxidoreductase activity
BOQ57_08810	COG3437	response regulator, receiver
BOQ57_08815	COG0583	DNA-binding transcription factor activity
BOQ57_08825	COG5001	Diguanylate cyclase
BOQ57_08825	COG3300	MHYT domain
BOQ57_08830	COG0778	Nitroreductase
BOQ57_08850	COG0583	DNA-binding transcription factor activity
BOQ57_08860	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
BOQ57_08870	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
BOQ57_08875	COG0539	negative regulation of cytoplasmic translation
BOQ57_08880	COG0776	regulation of translation
BOQ57_08890	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
BOQ57_08910	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
BOQ57_08915	COG0602	queuosine metabolic process
BOQ57_08920	COG3530	Putative quorum-sensing-regulated virulence factor
BOQ57_08925	COG2096	Adenosyltransferase
BOQ57_08930	COG2916	Histone family protein nucleoid-structuring protein H-NS
BOQ57_08935	COG1757	Na H antiporter
BOQ57_08940	COG1435	thymidine kinase activity
BOQ57_08970	COG3501	Rhs element vgr protein
BOQ57_09075	COG3501	Rhs element vgr protein
BOQ57_09100	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
BOQ57_09105	COG1278	Cold shock
BOQ57_09110	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
BOQ57_09115	COG0542	response to heat
BOQ57_09120	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
BOQ57_09125	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
BOQ57_09130	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
BOQ57_09135	COG3134	Outer membrane lipoprotein
BOQ57_09140	COG3706	GGDEF domain
BOQ57_09145	COG0492	ferredoxin-NADP+ reductase activity
BOQ57_09160	COG0531	amino acid
BOQ57_09160	COG1674	ftsk spoiiie
BOQ57_09165	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
BOQ57_09170	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
BOQ57_09180	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
BOQ57_09185	COG1286	toxin biosynthetic process
BOQ57_09190	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
BOQ57_09200	COG4172	Belongs to the ABC transporter superfamily
BOQ57_09210	COG4171	peptide transport system, permease
BOQ57_09215	COG4168	peptide transport system, permease
BOQ57_09225	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
BOQ57_09230	COG1842	Phage shock protein A
BOQ57_09245	COG3106	COG3106 Predicted ATPase
BOQ57_09250	COG3768	UPF0283 membrane protein
BOQ57_09260	COG2154	pterin-4-alpha-carbinolamine dehydratase
BOQ57_09265	COG2154	pterin-4-alpha-carbinolamine dehydratase
BOQ57_09270	COG2154	pterin-4-alpha-carbinolamine dehydratase
BOQ57_09285	COG2199	diguanylate cyclase activity
BOQ57_09290	COG2885	chlorophyll binding
BOQ57_09295	COG0861	Integral membrane protein TerC family
BOQ57_09310	COG1022	Amp-dependent synthetase and ligase
BOQ57_09315	COG0295	cytidine deaminase activity
BOQ57_09320	COG1346	cytolysis
BOQ57_09325	COG1380	Effector of murein hydrolase LrgA
BOQ57_09330	COG3345	alpha-galactosidase
BOQ57_09340	COG2925	Exonuclease
BOQ57_09345	COG0582	viral genome integration into host DNA
BOQ57_09380	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
BOQ57_09395	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
BOQ57_09400	COG1476	TRANSCRIPTIONal
BOQ57_09420	COG1846	Transcriptional regulator
BOQ57_09475	COG4220	transposase activity
BOQ57_09495	COG0740	serine-type endopeptidase activity
BOQ57_09580	COG2160	L-arabinose isomerase activity
BOQ57_09590	COG1069	ribulokinase activity
BOQ57_09595	COG1879	ABC-type sugar transport system periplasmic component
BOQ57_09605	COG1172	Belongs to the binding-protein-dependent transport system permease family
BOQ57_09615	COG0583	DNA-binding transcription factor activity
BOQ57_09625	COG0257	Belongs to the bacterial ribosomal protein bL36 family
BOQ57_09630	COG0254	rRNA binding
BOQ57_09645	COG1451	nucleotide metabolic process
BOQ57_09660	COG3069	C4-dicarboxylate transmembrane transporter activity
BOQ57_09670	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
BOQ57_09670	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BOQ57_09675	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BOQ57_09695	COG2009	succinate dehydrogenase
BOQ57_09700	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
BOQ57_09705	COG1053	succinate dehydrogenase
BOQ57_09715	COG0567	Dehydrogenase, E1 component
BOQ57_09720	COG0508	dehydrogenase complex catalyzes the overall conversion of
BOQ57_09725	COG0045	succinate-CoA ligase (ADP-forming) activity
BOQ57_09730	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
BOQ57_09740	COG2983	Belongs to the UPF0260 family
BOQ57_09745	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BOQ57_09755	COG3842	ATPase activity
BOQ57_09760	COG1840	ABC-type Fe3 transport system, periplasmic component
BOQ57_09770	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
BOQ57_09780	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BOQ57_09785	COG1882	Formate acetyltransferase
BOQ57_09790	COG2116	formate transmembrane transporter activity
BOQ57_09795	COG1944	ATP diphosphatase activity
BOQ57_09800	COG2076	Multidrug Resistance protein
BOQ57_09805	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
BOQ57_09810	COG0612	Peptidase, M16
BOQ57_09825	COG2910	NAD(P)H-binding
BOQ57_09830	COG0583	DNA-binding transcription factor activity
BOQ57_09840	COG4977	sequence-specific DNA binding
BOQ57_09845	COG4774	siderophore transport
BOQ57_09855	COG0583	DNA-binding transcription factor activity
BOQ57_09860	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
BOQ57_09885	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BOQ57_09890	COG3046	protein related to deoxyribodipyrimidine photolyase
BOQ57_09910	COG1051	belongs to the nudix hydrolase family
BOQ57_09915	COG3088	subunit of a heme lyase
BOQ57_09915	COG4235	cytochrome complex assembly
BOQ57_09920	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BOQ57_09925	COG1138	Cytochrome C-type biogenesis protein
BOQ57_09930	COG3301	Polysulphide reductase, NrfD
BOQ57_09935	COG0437	4 iron, 4 sulfur cluster binding
BOQ57_09940	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
BOQ57_09955	COG0247	lactate metabolic process
BOQ57_09960	COG3075	Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor
BOQ57_09965	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
BOQ57_09970	COG3012	SEC-C Motif Domain Protein
BOQ57_09975	COG0840	transmembrane signaling receptor activity
BOQ57_09980	COG1846	Transcriptional regulator
BOQ57_09980	COG1940	carbohydrate kinase activity
BOQ57_09985	COG3290	protein histidine kinase activity
BOQ57_09990	COG4565	transcriptional regulatory protein
BOQ57_10015	COG2985	domain, Protein
BOQ57_10015	COG0569	domain protein
BOQ57_10030	COG0556	nucleotide-excision repair
BOQ57_10040	COG0586	Pfam SNARE associated Golgi protein
BOQ57_10045	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
BOQ57_10050	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
BOQ57_10055	COG2186	Transcriptional regulator
BOQ57_10060	COG2719	SpoVR family
BOQ57_10070	COG2766	serine protein kinase
BOQ57_10075	COG0514	ATP-dependent DNA helicase (RecQ)
BOQ57_10080	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
BOQ57_10085	COG0814	amino acid
BOQ57_10120	COG0058	SHG alpha-glucan phosphorylase activity
BOQ57_10125	COG0471	metal ion transport
BOQ57_10130	COG3118	belongs to the thioredoxin family
BOQ57_10140	COG1132	(ABC) transporter
BOQ57_10145	COG1132	(ABC) transporter
BOQ57_10155	COG2501	S4 domain
BOQ57_10165	COG3243	poly(R)-hydroxyalkanoic acid synthase
BOQ57_10185	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
BOQ57_10190	COG2329	Antibiotic biosynthesis monooxygenase
BOQ57_10220	COG1742	UPF0060 membrane protein
BOQ57_10230	COG0456	acetyltransferase
BOQ57_10235	COG0513	Belongs to the DEAD box helicase family
BOQ57_10240	COG0386	Belongs to the glutathione peroxidase family
BOQ57_10250	COG1181	Belongs to the D-alanine--D-alanine ligase family
BOQ57_10265	COG0730	response to heat
BOQ57_10270	COG0583	DNA-binding transcription factor activity
BOQ57_10285	COG3593	DNA synthesis involved in DNA repair
BOQ57_10335	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
BOQ57_10340	COG1011	Hydrolase
BOQ57_10345	COG1473	amidohydrolase
BOQ57_10350	COG0205	6-phosphofructokinase activity
BOQ57_10360	COG1434	Gram-negative-bacterium-type cell wall biogenesis
BOQ57_10365	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
BOQ57_10375	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
BOQ57_10380	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
BOQ57_10400	COG0242	peptide deformylase activity
BOQ57_10430	COG0384	phenazine biosynthesis protein PhzF
BOQ57_10440	COG2824	Alkylphosphonate utilization operon protein PhnA
BOQ57_10465	COG0406	alpha-ribazole phosphatase activity
BOQ57_10470	COG3706	GGDEF domain
BOQ57_10480	COG2840	Smr protein MutS2
BOQ57_10485	COG2890	protein-(glutamine-N5) methyltransferase activity
BOQ57_10490	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
BOQ57_10500	COG0513	Belongs to the DEAD box helicase family
BOQ57_10505	COG5654	RES domain protein
BOQ57_10515	COG0814	amino acid
BOQ57_10520	COG1609	Transcriptional regulator
BOQ57_10525	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
BOQ57_10525	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BOQ57_10530	COG1105	Belongs to the carbohydrate kinase PfkB family
BOQ57_10535	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BOQ57_10535	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BOQ57_10535	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
BOQ57_10540	COG2140	Oxalate decarboxylase
BOQ57_10545	COG1609	Transcriptional regulator
BOQ57_10560	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BOQ57_10560	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
BOQ57_10565	COG3715	PTS system
BOQ57_10570	COG3716	PTS system mannose fructose sorbose family IID component
BOQ57_10575	COG2942	2-epimerase
BOQ57_10580	COG3313	Fe-S protein
BOQ57_10585	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
BOQ57_10590	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
BOQ57_10595	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BOQ57_10600	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BOQ57_10610	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
BOQ57_10630	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
BOQ57_10635	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
BOQ57_10640	COG0291	Belongs to the bacterial ribosomal protein bL35 family
BOQ57_10645	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
BOQ57_10650	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
BOQ57_10655	COG0072	phenylalanine-tRNA ligase activity
BOQ57_10655	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BOQ57_10660	COG0776	regulation of translation
BOQ57_10680	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
BOQ57_10690	COG5001	Diguanylate cyclase
BOQ57_10690	COG3300	MHYT domain
BOQ57_10695	COG1609	Transcriptional regulator
BOQ57_10700	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BOQ57_10705	COG1879	ABC-type sugar transport system periplasmic component
BOQ57_10710	COG1172	Belongs to the binding-protein-dependent transport system permease family
BOQ57_10715	COG1129	ABC transporter
BOQ57_10720	COG1869	D-ribose catabolic process
BOQ57_10725	COG0625	glutathione transferase activity
BOQ57_10740	COG0037	tRNA processing
BOQ57_10745	COG0589	response to stress
BOQ57_10750	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BOQ57_10775	COG2010	Cytochrome c
BOQ57_10790	COG3278	Belongs to the heme-copper respiratory oxidase family
BOQ57_10800	COG1956	GAF domain-containing protein
BOQ57_10805	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
BOQ57_10815	COG0308	aminopeptidase N
BOQ57_10825	COG2902	Dehydrogenase
BOQ57_10830	COG0167	dihydroorotate dehydrogenase activity
BOQ57_10840	COG0116	Belongs to the methyltransferase superfamily
BOQ57_10840	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
BOQ57_10850	COG0488	(ABC) transporter
BOQ57_10865	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
BOQ57_10870	COG1067	ATP-dependent peptidase activity
BOQ57_10930	COG3141	response to X-ray
BOQ57_10940	COG4221	oxidoreductase activity
BOQ57_10985	COG0372	Belongs to the citrate synthase family
BOQ57_10990	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
BOQ57_11000	COG2995	paraquat-inducible protein a
BOQ57_11005	COG3008	intermembrane lipid transfer
BOQ57_11010	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
BOQ57_11010	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
BOQ57_11025	COG0084	hydrolase, TatD family'
BOQ57_11030	COG0470	DNA polymerase III
BOQ57_11035	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
BOQ57_11040	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
BOQ57_11045	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BOQ57_11050	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BOQ57_11055	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BOQ57_11060	COG1028	Short-chain dehydrogenase reductase Sdr
BOQ57_11070	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BOQ57_11075	COG0416	fatty acid biosynthetic process
BOQ57_11080	COG0333	Belongs to the bacterial ribosomal protein bL32 family
BOQ57_11085	COG1399	metal-binding, possibly nucleic acid-binding protein
BOQ57_11100	COG2814	Major facilitator Superfamily
BOQ57_11105	COG0424	maF-like protein
BOQ57_11110	COG0546	phosphoglycolate phosphatase activity
BOQ57_11115	COG0564	pseudouridine synthase activity
BOQ57_11120	COG1530	ribonuclease E activity
BOQ57_11135	COG0697	spore germination
BOQ57_11225	COG0110	maltose O-acetyltransferase activity
BOQ57_11280	COG1660	Displays ATPase and GTPase activities
BOQ57_11290	COG3316	Transposase and inactivated derivatives
BOQ57_11350	COG1695	Transcriptional regulator
BOQ57_11360	COG3316	Transposase and inactivated derivatives
BOQ57_11385	COG3173	Aminoglycoside phosphotransferase
BOQ57_11395	COG3316	Transposase and inactivated derivatives
BOQ57_11410	COG4974	Belongs to the 'phage' integrase family
BOQ57_11425	COG3173	Aminoglycoside phosphotransferase
BOQ57_11435	COG3316	Transposase and inactivated derivatives
BOQ57_11450	COG3300	MHYT domain
BOQ57_11450	COG5001	Diguanylate cyclase
BOQ57_11490	COG0306	phosphate transporter
BOQ57_11495	COG0717	Belongs to the dCTP deaminase family
BOQ57_11500	COG0572	uridine kinase
BOQ57_11505	COG0489	protein tyrosine kinase activity
BOQ57_11510	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BOQ57_11510	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BOQ57_11515	COG0625	glutathione transferase activity
BOQ57_11520	COG1254	Belongs to the acylphosphatase family
BOQ57_11525	COG0840	transmembrane signaling receptor activity
BOQ57_11530	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
BOQ57_11545	COG0709	Synthesizes selenophosphate from selenide and ATP
BOQ57_11550	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
BOQ57_11555	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BOQ57_11560	COG3437	response regulator, receiver
BOQ57_11570	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
BOQ57_11580	COG1643	Atp-dependent helicase
BOQ57_11600	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
BOQ57_11610	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
BOQ57_11615	COG2832	Protein of unknown function (DUF454)
BOQ57_11620	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BOQ57_11635	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
BOQ57_11640	COG0318	PFAM AMP-dependent synthetase and ligase
BOQ57_11645	COG2226	methyltransferase
BOQ57_11645	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BOQ57_11645	COG0596	Alpha beta hydrolase
BOQ57_11655	COG1214	PFAM Peptidase M22, glycoprotease
BOQ57_11660	COG1199	ATP-dependent helicase activity
BOQ57_11670	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
BOQ57_11675	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
BOQ57_11680	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
BOQ57_11685	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
BOQ57_11685	COG0131	Imidazoleglycerol-phosphate dehydratase
BOQ57_11690	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
BOQ57_11695	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
BOQ57_11700	COG3437	response regulator, receiver
BOQ57_11710	COG2198	Histidine kinase
BOQ57_11710	COG2205	protein histidine kinase activity
BOQ57_11710	COG0784	Response regulator, receiver
BOQ57_11715	COG0107	imidazoleglycerol-phosphate synthase activity
BOQ57_11720	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
BOQ57_11720	COG0140	phosphoribosyl-ATP diphosphatase activity
BOQ57_11725	COG0318	PFAM AMP-dependent synthetase and ligase
BOQ57_11730	COG1288	antiporter activity
BOQ57_11740	COG3134	Outer membrane lipoprotein
BOQ57_11750	COG2080	2 iron, 2 sulfur cluster binding
BOQ57_11755	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
BOQ57_11760	COG1529	Aldehyde oxidase and xanthine dehydrogenase
BOQ57_11765	COG2252	PERMEase
BOQ57_11770	COG0402	S-adenosylhomocysteine deaminase activity
BOQ57_11775	COG2233	PERMEase
BOQ57_11780	COG1529	Aldehyde oxidase and xanthine dehydrogenase
BOQ57_11780	COG2080	2 iron, 2 sulfur cluster binding
BOQ57_11785	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
BOQ57_11790	COG0402	S-adenosylhomocysteine deaminase activity
BOQ57_11795	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
BOQ57_11795	COG0493	'glutamate synthase
BOQ57_11800	COG2068	MobA-Related Protein
BOQ57_11805	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
BOQ57_11810	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
BOQ57_11810	COG3608	succinylglutamate desuccinylase aspartoacylase
BOQ57_11815	COG0697	spore germination
BOQ57_11820	COG0549	Belongs to the carbamate kinase family
BOQ57_11830	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BOQ57_11835	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
BOQ57_11840	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
BOQ57_11855	COG4681	YaeQ
BOQ57_11865	COG1250	3-hydroxyacyl-CoA dehydrogenase
BOQ57_11865	COG1024	Enoyl-CoA hydratase
BOQ57_11870	COG0183	Belongs to the thiolase family
BOQ57_11875	COG0714	Associated with various cellular activities
BOQ57_11905	COG1595	DNA-templated transcription, initiation
BOQ57_11920	COG2067	long-chain fatty acid transport protein
BOQ57_11925	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
BOQ57_11945	COG3123	guanosine phosphorylase activity
BOQ57_11950	COG1760	l-serine dehydratase
BOQ57_11960	COG1760	l-serine dehydratase
BOQ57_11965	COG2951	lytic endotransglycosylase activity
BOQ57_11970	COG3100	YcgL domain-containing protein
BOQ57_11975	COG0850	regulation of cytokinetic process
BOQ57_11980	COG2894	cell division
BOQ57_11985	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
BOQ57_11995	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BOQ57_12035	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
BOQ57_12040	COG0697	spore germination
BOQ57_12045	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
BOQ57_12050	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BOQ57_12060	COG0307	riboflavin synthase, alpha
BOQ57_12100	COG0417	DNA replication proofreading
BOQ57_12125	COG1560	Kdo2-lipid A biosynthetic process
BOQ57_12130	COG1560	Kdo2-lipid A biosynthetic process
BOQ57_12140	COG0583	DNA-binding transcription factor activity
BOQ57_12145	COG0673	inositol 2-dehydrogenase activity
BOQ57_12150	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
BOQ57_12155	COG0583	DNA-binding transcription factor activity
BOQ57_12165	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
BOQ57_12175	COG5001	Diguanylate cyclase
BOQ57_12175	COG3300	MHYT domain
BOQ57_12180	COG2723	6-phospho-beta-galactosidase activity
BOQ57_12185	COG0583	DNA-binding transcription factor activity
BOQ57_12190	COG5001	Diguanylate cyclase
BOQ57_12190	COG3300	MHYT domain
BOQ57_12235	COG2003	Belongs to the UPF0758 family
BOQ57_12255	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
BOQ57_12270	COG0582	viral genome integration into host DNA
BOQ57_12280	COG0730	response to heat
BOQ57_12290	COG1028	Short-chain dehydrogenase reductase Sdr
BOQ57_12300	COG1024	Enoyl-CoA hydratase
BOQ57_12305	COG1024	Enoyl-CoA hydratase
BOQ57_12310	COG1960	acyl-CoA dehydrogenase activity
BOQ57_12320	COG1960	acyl-CoA dehydrogenase activity
BOQ57_12325	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
BOQ57_12360	COG1584	GPR1 FUN34 yaaH family protein
BOQ57_12365	COG3228	Belongs to the MtfA family
BOQ57_12375	COG1115	amino acid carrier protein
BOQ57_12380	COG1024	Enoyl-CoA hydratase
BOQ57_12395	COG3162	membrane
BOQ57_12400	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BOQ57_12405	COG0488	(ABC) transporter
BOQ57_12410	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BOQ57_12415	COG0776	regulation of translation
BOQ57_12420	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
BOQ57_12425	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
BOQ57_12430	COG0740	serine-type endopeptidase activity
BOQ57_12435	COG0544	peptidyl-prolyl cis-trans isomerase activity
BOQ57_12450	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
BOQ57_12455	COG4591	ABC-type transport system involved in lipoprotein release permease component
BOQ57_12460	COG1136	(ABC) transporter
BOQ57_12465	COG4591	ABC-type transport system involved in lipoprotein release permease component
BOQ57_12475	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
BOQ57_12480	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
BOQ57_12485	COG4166	transmembrane transport
BOQ57_12490	COG0697	spore germination
BOQ57_12500	COG2062	phosphohistidine phosphatase, SixA
BOQ57_12540	COG0518	GMP synthase (glutamine-hydrolyzing) activity
BOQ57_12540	COG0519	Catalyzes the synthesis of GMP from XMP
BOQ57_12545	COG0516	GMP reductase activity
BOQ57_12545	COG0517	IMP dehydrogenase activity
BOQ57_12550	COG3158	transport of potassium into the cell
BOQ57_12570	COG0697	spore germination
BOQ57_12575	COG1570	exodeoxyribonuclease VII activity
BOQ57_12590	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BOQ57_12595	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
BOQ57_12600	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
BOQ57_12620	COG0598	Magnesium transport protein CorA
BOQ57_12640	COG4771	TonB-dependent receptor
BOQ57_12645	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BOQ57_12650	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BOQ57_12655	COG1120	ATPase activity
BOQ57_12665	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
BOQ57_12670	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BOQ57_12680	COG1028	Short-chain dehydrogenase reductase Sdr
BOQ57_12685	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BOQ57_12690	COG1535	isochorismatase
BOQ57_12690	COG3433	isochorismatase activity
BOQ57_12695	COG1021	2,3-dihydroxybenzoate-AMP ligase
BOQ57_12715	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
BOQ57_12720	COG5001	Diguanylate cyclase
BOQ57_12720	COG3300	MHYT domain
BOQ57_12735	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BOQ57_12745	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
BOQ57_12750	COG0563	adenylate kinase activity
BOQ57_12760	COG0326	Molecular chaperone. Has ATPase activity
BOQ57_12765	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
BOQ57_12790	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
BOQ57_12800	COG3158	transport of potassium into the cell
BOQ57_12805	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
BOQ57_12810	COG0651	ATP synthesis coupled electron transport
BOQ57_12815	COG0650	Formate hydrogenlyase subunit 4
BOQ57_12820	COG3261	NADH dehydrogenase
BOQ57_12820	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
BOQ57_12825	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BOQ57_12830	COG3260	NADH ubiquinone oxidoreductase 20
BOQ57_12840	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
BOQ57_12845	COG1921	L-seryl-tRNASec selenium transferase activity
BOQ57_12855	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
BOQ57_12860	COG0298	carbon dioxide binding
BOQ57_12870	COG0309	Hydrogenase expression formation protein (HypE)
BOQ57_12875	COG0375	protein maturation
BOQ57_12880	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
BOQ57_12885	COG3842	ATPase activity
BOQ57_12895	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BOQ57_12905	COG0747	negative chemotaxis
BOQ57_12910	COG1773	rubredoxin
BOQ57_12915	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
BOQ57_12920	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
BOQ57_12925	COG5557	Pfam Polysulphide reductase, NrfD
BOQ57_12930	COG0437	4 iron, 4 sulfur cluster binding
BOQ57_12935	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
BOQ57_12940	COG0745	RESPONSE REGULATOR receiver
BOQ57_12950	COG2198	Histidine kinase
BOQ57_12950	COG0643	Histidine kinase
BOQ57_12955	COG0840	transmembrane signaling receptor activity
BOQ57_12955	COG3290	protein histidine kinase activity
BOQ57_12960	COG0835	chemotaxis
BOQ57_12970	COG2201	protein-glutamate methylesterase activity
BOQ57_12980	COG0840	transmembrane signaling receptor activity
BOQ57_12985	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
BOQ57_13005	COG0659	secondary active sulfate transmembrane transporter activity
BOQ57_13035	COG0672	)-iron permease
BOQ57_13055	COG2814	Major facilitator Superfamily
BOQ57_13065	COG1136	(ABC) transporter
BOQ57_13100	COG1139	Iron-sulfur cluster binding protein
BOQ57_13105	COG0247	lactate metabolic process
BOQ57_13110	COG1620	l-lactate permease
BOQ57_13115	COG0583	DNA-binding transcription factor activity
BOQ57_13125	COG0346	lactoylglutathione lyase activity
BOQ57_13130	COG0596	Alpha beta hydrolase
BOQ57_13155	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
BOQ57_13160	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
BOQ57_13160	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
BOQ57_13165	COG0527	aspartate kinase activity
BOQ57_13180	COG1368	sulfuric ester hydrolase activity
BOQ57_13185	COG1619	proteins homologs of microcin C7 resistance protein MccF
BOQ57_13190	COG4667	esterase of the alpha-beta hydrolase superfamily
BOQ57_13205	COG2221	Nitrite and sulphite reductase 4Fe-4S
BOQ57_13210	COG1648	precorrin-2 dehydrogenase activity
BOQ57_13210	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
BOQ57_13220	COG0393	Putative heavy-metal-binding
BOQ57_13240	COG1252	NADH dehydrogenase
BOQ57_13250	COG2233	PERMEase
BOQ57_13265	COG2354	Protein conserved in bacteria
BOQ57_13275	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BOQ57_13280	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BOQ57_13315	COG0537	adenosine 5'-monophosphoramidase activity
BOQ57_13330	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
BOQ57_13345	COG1301	dicarboxylic acid transport
BOQ57_13355	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
BOQ57_13360	COG0861	Integral membrane protein TerC family
BOQ57_13370	COG0444	Belongs to the ABC transporter superfamily
BOQ57_13375	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BOQ57_13380	COG0601	transmembrane transport
BOQ57_13390	COG2095	MarC family integral membrane protein
BOQ57_13400	COG1012	belongs to the aldehyde dehydrogenase family
BOQ57_13400	COG1454	alcohol dehydrogenase
BOQ57_13405	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
BOQ57_13405	COG2199	diguanylate cyclase activity
BOQ57_13410	COG3275	phosphorelay sensor kinase activity
BOQ57_13415	COG3279	Response regulator of the LytR AlgR family
BOQ57_13420	COG1966	Carbon starvation protein
BOQ57_13430	COG1566	PFAM secretion protein HlyD family protein
BOQ57_13435	COG1061	Type III restriction enzyme res subunit
BOQ57_13440	COG2027	D-alanyl-D-alanine carboxypeptidase
BOQ57_13445	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
BOQ57_13455	COG0436	Aminotransferase
BOQ57_13460	COG1288	antiporter activity
BOQ57_13465	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
BOQ57_13485	COG0697	spore germination
BOQ57_13490	COG4657	Part of a membrane complex involved in electron transport
BOQ57_13495	COG2878	Part of a membrane complex involved in electron transport
BOQ57_13505	COG4658	electron transport chain
BOQ57_13510	COG4659	FMN binding
BOQ57_13520	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
BOQ57_13525	COG0346	lactoylglutathione lyase activity
BOQ57_13540	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BOQ57_13545	COG2056	Na+-H+ antiporter family
BOQ57_13555	COG2050	protein possibly involved in aromatic compounds catabolism
BOQ57_13565	COG0277	FAD linked oxidase domain protein
BOQ57_13565	COG0247	lactate metabolic process
BOQ57_13575	COG1253	flavin adenine dinucleotide binding
BOQ57_13580	COG1902	pentaerythritol trinitrate reductase activity
BOQ57_13585	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
BOQ57_13590	COG0647	UMP catabolic process
BOQ57_13595	COG4651	solute:proton antiporter activity
BOQ57_13595	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BOQ57_13605	COG0367	asparagine synthase
BOQ57_13615	COG0625	glutathione transferase activity
BOQ57_13620	COG0625	glutathione transferase activity
BOQ57_13630	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
BOQ57_13645	COG0564	pseudouridine synthase activity
BOQ57_13650	COG5001	Diguanylate cyclase
BOQ57_13655	COG0840	transmembrane signaling receptor activity
BOQ57_13665	COG0392	lysyltransferase activity
BOQ57_13665	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
BOQ57_13675	COG2194	sulfuric ester hydrolase activity
BOQ57_13695	COG0670	Belongs to the BI1 family
BOQ57_13700	COG1289	transmembrane transporter activity
BOQ57_13705	COG2920	part of a sulfur-relay system
BOQ57_13710	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
BOQ57_13715	COG0285	dihydrofolate synthase activity
BOQ57_13720	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
BOQ57_13725	COG0101	tRNA pseudouridine synthase activity
BOQ57_13735	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
BOQ57_13740	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
BOQ57_13745	COG0671	phosphoesterase, PA-phosphatase related
BOQ57_13750	COG1464	Belongs to the NlpA lipoprotein family
BOQ57_13790	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
BOQ57_13790	COG0574	Belongs to the PEP-utilizing enzyme family
BOQ57_13795	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
BOQ57_13890	COG1242	4 iron, 4 sulfur cluster binding
BOQ57_13900	COG0069	glutamate synthase activity
BOQ57_13900	COG0067	glutamate synthase
BOQ57_13900	COG0070	glutamate synthase
BOQ57_13905	COG0493	'glutamate synthase
BOQ57_13910	COG1126	abc transporter atp-binding protein
BOQ57_13915	COG0765	amino acid transport
BOQ57_13920	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BOQ57_13935	COG0789	Transcriptional regulator
BOQ57_13950	COG4104	PAAR repeat-containing protein
BOQ57_13960	COG0513	Belongs to the DEAD box helicase family
BOQ57_13965	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BOQ57_13995	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
BOQ57_14000	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
BOQ57_14005	COG0505	Belongs to the CarA family
BOQ57_14010	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
BOQ57_14020	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
BOQ57_14025	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
BOQ57_14030	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
BOQ57_14035	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
BOQ57_14040	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BOQ57_14050	COG4138	Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system
BOQ57_14060	COG2205	protein histidine kinase activity
BOQ57_14060	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BOQ57_14075	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
BOQ57_14100	COG0023	Translation Initiation Factor
BOQ57_14105	COG2119	membrane
BOQ57_14135	COG2203	Gaf domain
BOQ57_14135	COG2199	diguanylate cyclase activity
BOQ57_14160	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
BOQ57_14170	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BOQ57_14175	COG3301	Polysulphide reductase, NrfD
BOQ57_14180	COG0437	4 iron, 4 sulfur cluster binding
BOQ57_14185	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
BOQ57_14240	COG0322	excinuclease ABC activity
BOQ57_14245	COG2197	response regulator
BOQ57_14250	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
BOQ57_14255	COG2835	tetraacyldisaccharide 4'-kinase activity
BOQ57_14260	COG1663	tetraacyldisaccharide 4'-kinase activity
BOQ57_14265	COG1132	(ABC) transporter
BOQ57_14270	COG0658	competence protein
BOQ57_14270	COG2333	competence protein COMEC
BOQ57_14285	COG0433	COG0433 Predicted ATPase
BOQ57_14290	COG1448	Aminotransferase
BOQ57_14300	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BOQ57_14305	COG1199	ATP-dependent helicase activity
BOQ57_14315	COG0123	including yeast histone deacetylase and acetoin utilization protein
BOQ57_14320	COG0477	Major facilitator Superfamily
BOQ57_14325	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
BOQ57_14350	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BOQ57_14365	COG2271	Major facilitator Superfamily
BOQ57_14370	COG3706	GGDEF domain
BOQ57_14375	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BOQ57_14380	COG0765	amino acid transport
BOQ57_14385	COG1126	abc transporter atp-binding protein
BOQ57_14400	COG0531	amino acid
BOQ57_14415	COG1253	flavin adenine dinucleotide binding
BOQ57_14420	COG0704	Plays a role in the regulation of phosphate uptake
BOQ57_14430	COG0581	inorganic phosphate transmembrane transporter activity
BOQ57_14435	COG0573	inorganic phosphate transmembrane transporter activity
BOQ57_14440	COG0590	tRNA wobble adenosine to inosine editing
BOQ57_14450	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
BOQ57_14470	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
BOQ57_14475	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
BOQ57_14480	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
BOQ57_14485	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
BOQ57_14490	COG2204	response regulator
BOQ57_14495	COG3852	Histidine kinase
BOQ57_14500	COG2204	response regulator
BOQ57_14510	COG2716	regulation of RNA biosynthetic process
BOQ57_14515	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
BOQ57_14520	COG0248	Ppx GppA phosphatase
BOQ57_14525	COG2239	Acts as a magnesium transporter
BOQ57_14535	COG1256	bacterial-type flagellum assembly
BOQ57_14540	COG1705	Flagellar rod assembly protein muramidase FlgJ
BOQ57_14540	COG3951	Flagellar rod assembly protein muramidase FlgJ
BOQ57_14545	COG1706	bacterial-type flagellum-dependent cell motility
BOQ57_14550	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
BOQ57_14555	COG4786	Flagellar basal body rod
BOQ57_14560	COG4787	bacterial-type flagellum-dependent cell motility
BOQ57_14565	COG1749	Flagellar hook protein flgE
BOQ57_14575	COG1558	bacterial-type flagellum-dependent cell motility
BOQ57_14580	COG1815	bacterial-type flagellum-dependent cell motility
BOQ57_14585	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
BOQ57_14590	COG0784	Response regulator, receiver
BOQ57_14590	COG0835	chemotaxis
BOQ57_14595	COG1261	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly
BOQ57_14610	COG0622	Phosphoesterase
BOQ57_14625	COG1187	pseudouridine synthase activity
BOQ57_14640	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
BOQ57_14645	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
BOQ57_14655	COG1349	DNA-binding transcription factor activity
BOQ57_14660	COG0697	spore germination
BOQ57_14690	COG1278	Cold shock
BOQ57_14730	COG3132	Protein of unknown function, DUF480
BOQ57_14745	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BOQ57_14765	COG3206	protein involved in exopolysaccharide biosynthesis
BOQ57_14765	COG0489	protein tyrosine kinase activity
BOQ57_14775	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
BOQ57_14785	COG1091	dTDP-4-dehydrorhamnose reductase activity
BOQ57_14800	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
BOQ57_14825	COG1086	Polysaccharide biosynthesis protein
BOQ57_14835	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
BOQ57_14840	COG0482	sulfurtransferase activity
BOQ57_14860	COG2826	transposase and inactivated derivatives, IS30 family
BOQ57_14865	COG2963	transposase activity
BOQ57_14910	COG1091	dTDP-4-dehydrorhamnose reductase activity
BOQ57_14920	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
BOQ57_14925	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
BOQ57_14935	COG1538	Outer membrane efflux protein
BOQ57_14940	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BOQ57_14945	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BOQ57_14950	COG1309	transcriptional regulator
BOQ57_14965	COG1946	Acyl-CoA thioesterase
BOQ57_14975	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
BOQ57_14985	COG0009	L-threonylcarbamoyladenylate synthase
BOQ57_14995	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
BOQ57_15000	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
BOQ57_15000	COG0512	Glutamine amidotransferase of anthranilate synthase
BOQ57_15005	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
BOQ57_15010	COG0134	indole-3-glycerol-phosphate synthase activity
BOQ57_15010	COG0135	phosphoribosylanthranilate isomerase activity
BOQ57_15015	COG0133	tryptophan synthase activity
BOQ57_15020	COG0159	tryptophan synthase activity
BOQ57_15025	COG1988	membrane-bound metal-dependent
BOQ57_15045	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
BOQ57_15055	COG4521	taurine ABC transporter
BOQ57_15060	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
BOQ57_15065	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BOQ57_15070	COG2175	clavaminate synthase activity
BOQ57_15080	COG2814	Major facilitator Superfamily
BOQ57_15085	COG0109	protoheme IX farnesyltransferase activity
BOQ57_15090	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
BOQ57_15095	COG1845	cytochrome c oxidase, subunit III
BOQ57_15100	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
BOQ57_15105	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
BOQ57_15150	COG2211	Major facilitator Superfamily
BOQ57_15165	COG0708	Exodeoxyribonuclease III
BOQ57_15185	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BOQ57_15190	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BOQ57_15210	COG0095	Lipoate-protein ligase
BOQ57_15240	COG0640	Transcriptional regulator
BOQ57_15255	COG1285	pathogenesis
BOQ57_15285	COG0484	heat shock protein binding
BOQ57_15290	COG0443	Heat shock 70 kDa protein
BOQ57_15295	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
BOQ57_15300	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
BOQ57_15305	COG0497	DNA recombination
BOQ57_15310	COG1227	inorganic diphosphatase activity
BOQ57_15320	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BOQ57_15325	COG1136	(ABC) transporter
BOQ57_15325	COG0577	efflux transmembrane transporter activity
BOQ57_15330	COG1538	Outer membrane efflux protein
BOQ57_15335	COG2375	cellular response to nickel ion
BOQ57_15345	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BOQ57_15365	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BOQ57_15370	COG1917	Cupin 2, conserved barrel domain protein
BOQ57_15370	COG1396	sequence-specific DNA binding
BOQ57_15385	COG0531	amino acid
BOQ57_15395	COG0531	amino acid
BOQ57_15405	COG1283	sodium-dependent phosphate transmembrane transporter activity
BOQ57_15415	COG3384	dioxygenase
BOQ57_15420	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BOQ57_15420	COG2205	protein histidine kinase activity
BOQ57_15435	COG0813	purine-nucleoside phosphorylase activity
BOQ57_15465	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
BOQ57_15470	COG0083	homoserine kinase activity
BOQ57_15480	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
BOQ57_15485	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
BOQ57_15500	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
BOQ57_15510	COG0745	RESPONSE REGULATOR receiver
BOQ57_15525	COG4988	ABC transporter
BOQ57_15530	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
BOQ57_15550	COG1720	tRNA m6t6A37 methyltransferase activity
BOQ57_15565	COG0542	response to heat
BOQ57_15570	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
BOQ57_15575	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BOQ57_15585	COG2190	(PTS) system
BOQ57_15590	COG3706	GGDEF domain
BOQ57_15590	COG0745	RESPONSE REGULATOR receiver
BOQ57_15600	COG3038	cytochrome b561
BOQ57_15610	COG0420	3'-5' exonuclease activity
BOQ57_15620	COG2974	May be involved in recombination
BOQ57_15630	COG4651	solute:proton antiporter activity
BOQ57_15630	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BOQ57_15645	COG0469	pyruvate kinase activity
BOQ57_15650	COG3264	Mechanosensitive ion channel
BOQ57_15650	COG1196	nuclear chromosome segregation
BOQ57_15660	COG2706	6-phosphogluconolactonase activity
BOQ57_15680	COG0281	malic enzyme
BOQ57_15695	COG0437	4 iron, 4 sulfur cluster binding
BOQ57_15700	COG3383	formate dehydrogenase (NAD+) activity
BOQ57_15700	COG3383	formate dehydrogenase (NAD+) activity
BOQ57_15740	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
BOQ57_15745	COG1910	domain protein
BOQ57_15750	COG3852	Histidine kinase
BOQ57_15765	COG4662	Binding-protein-dependent transport system inner membrane component
BOQ57_15775	COG0746	molybdenum cofactor guanylyltransferase activity
BOQ57_15780	COG0303	'Molybdopterin
BOQ57_15785	COG1289	transmembrane transporter activity
BOQ57_15815	COG3220	belongs to the UPF0276 family
BOQ57_15850	COG4166	transmembrane transport
BOQ57_15855	COG0601	transmembrane transport
BOQ57_15860	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BOQ57_15865	COG0444	Belongs to the ABC transporter superfamily
BOQ57_15870	COG4608	Belongs to the ABC transporter superfamily
BOQ57_15880	COG2971	BadF BadG BcrA BcrD
BOQ57_15890	COG0840	transmembrane signaling receptor activity
BOQ57_15900	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BOQ57_15905	COG3724	N-succinylarginine dihydrolase activity
BOQ57_15910	COG0616	signal peptide processing
BOQ57_15915	COG1028	Short-chain dehydrogenase reductase Sdr
BOQ57_15920	COG0583	DNA-binding transcription factor activity
BOQ57_15930	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
BOQ57_15940	COG0583	DNA-binding transcription factor activity
BOQ57_15950	COG1881	PFAM PEBP family protein
BOQ57_15960	COG3408	Glycogen debranching enzyme
BOQ57_15960	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
BOQ57_15965	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
BOQ57_15970	COG0739	heme binding
BOQ57_15975	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
BOQ57_15995	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
BOQ57_16005	COG3091	SprT-like family
BOQ57_16015	COG1385	rRNA (uridine-N3-)-methyltransferase activity
BOQ57_16020	COG0189	ligase activity
BOQ57_16030	COG1678	Uncharacterized ACR, COG1678
BOQ57_16035	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
BOQ57_16040	COG3104	oligopeptide transport
BOQ57_16065	COG0714	Associated with various cellular activities
BOQ57_16080	COG1115	amino acid carrier protein
BOQ57_16085	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
BOQ57_16100	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
BOQ57_16110	COG1301	dicarboxylic acid transport
BOQ57_16115	COG2877	3-deoxy-8-phosphooctulonate synthase activity
BOQ57_16120	COG2912	Transglutaminase-like superfamily
BOQ57_16130	COG2890	protein-(glutamine-N5) methyltransferase activity
BOQ57_16135	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
BOQ57_16140	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
BOQ57_16145	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
BOQ57_16150	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
BOQ57_16160	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
BOQ57_16165	COG0737	Belongs to the 5'-nucleotidase family
BOQ57_16170	COG0193	aminoacyl-tRNA hydrolase activity
BOQ57_16175	COG0012	GTP binding
BOQ57_16220	COG0490	domain, Protein
BOQ57_16220	COG0471	metal ion transport
BOQ57_16250	COG0366	Alpha amylase catalytic
BOQ57_16265	COG0488	(ABC) transporter
BOQ57_16275	COG0674	pyruvate-flavodoxin oxidoreductase activity
BOQ57_16275	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BOQ57_16275	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
BOQ57_16275	COG1013	pyruvate-flavodoxin oxidoreductase activity
BOQ57_16285	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BOQ57_16295	COG1012	belongs to the aldehyde dehydrogenase family
BOQ57_16305	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BOQ57_16320	COG0180	Tryptophanyl-tRNA synthetase
BOQ57_16330	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
BOQ57_16335	COG0338	D12 class N6 adenine-specific DNA methyltransferase
BOQ57_16345	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
BOQ57_16350	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
BOQ57_16380	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
BOQ57_16385	COG0583	DNA-binding transcription factor activity
BOQ57_16405	COG0583	DNA-binding transcription factor activity
BOQ57_16430	COG3264	Mechanosensitive ion channel
BOQ57_16430	COG1511	domain protein
BOQ57_16435	COG0584	glycerophosphoryl diester phosphodiesterase
BOQ57_16445	COG1053	succinate dehydrogenase
BOQ57_16450	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
BOQ57_16455	COG3029	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
BOQ57_16480	COG3214	Protein conserved in bacteria
BOQ57_16515	COG0745	RESPONSE REGULATOR receiver
BOQ57_16520	COG0642	Histidine kinase
BOQ57_16530	COG0516	GMP reductase activity
BOQ57_16540	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
BOQ57_16545	COG3647	Membrane
BOQ57_16555	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BOQ57_16565	COG3706	GGDEF domain
BOQ57_16575	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BOQ57_16590	COG3706	GGDEF domain
BOQ57_16600	COG1335	isochorismatase
BOQ57_16605	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BOQ57_16610	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
BOQ57_16615	COG1702	phosphate starvation-inducible protein PhoH
BOQ57_16620	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
BOQ57_16625	COG4535	Mg2 and Co2 transporter CorC
BOQ57_16630	COG0815	Transfers the fatty acyl group on membrane lipoproteins
BOQ57_16635	COG2888	peptidyl-tyrosine sulfation
BOQ57_16640	COG0495	leucyl-tRNA aminoacylation
BOQ57_16655	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
BOQ57_16660	COG0799	negative regulation of ribosome biogenesis
BOQ57_16665	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
BOQ57_16670	COG0768	penicillin binding
BOQ57_16675	COG0772	Belongs to the SEDS family
BOQ57_16680	COG0772	Belongs to the SEDS family
BOQ57_16685	COG2951	lytic endotransglycosylase activity
BOQ57_16690	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
BOQ57_16695	COG1686	Belongs to the peptidase S11 family
BOQ57_16700	COG2921	Belongs to the UPF0250 family
BOQ57_16705	COG0321	lipoyl(octanoyl) transferase activity
BOQ57_16710	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
BOQ57_16720	COG3545	Serine hydrolase
BOQ57_16725	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
BOQ57_16740	COG0789	Transcriptional regulator
BOQ57_16750	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BOQ57_16755	COG1970	mechanosensitive ion channel activity
BOQ57_16760	COG3706	GGDEF domain
BOQ57_16765	COG4974	Belongs to the 'phage' integrase family
BOQ57_16770	COG0716	FMN binding
BOQ57_16775	COG0312	modulator of DNA gyrase
BOQ57_16780	COG0312	modulator of DNA gyrase
BOQ57_16845	COG3275	phosphorelay sensor kinase activity
BOQ57_16850	COG3279	Response regulator of the LytR AlgR family
BOQ57_16855	COG1966	Carbon starvation protein
BOQ57_16865	COG0114	fumarate hydratase activity
BOQ57_16875	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
BOQ57_16885	COG2211	Major facilitator Superfamily
BOQ57_16890	COG1185	polyribonucleotide nucleotidyltransferase activity
BOQ57_16895	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
BOQ57_16900	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
BOQ57_16905	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
BOQ57_16910	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
BOQ57_16915	COG0195	Participates in both transcription termination and antitermination
BOQ57_16920	COG0779	Required for maturation of 30S ribosomal subunits
BOQ57_16935	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
BOQ57_16940	COG0149	triose-phosphate isomerase activity
BOQ57_16945	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BOQ57_16950	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
BOQ57_16955	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
BOQ57_16960	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
BOQ57_16965	COG1534	Rna-binding protein
BOQ57_16975	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BOQ57_16980	COG1360	Flagellar Motor Protein
BOQ57_16985	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
BOQ57_16990	COG1722	exodeoxyribonuclease VII activity
BOQ57_16995	COG0142	geranyltranstransferase activity
BOQ57_17000	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
BOQ57_17025	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
BOQ57_17030	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
BOQ57_17035	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BOQ57_17040	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
BOQ57_17060	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BOQ57_17060	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BOQ57_17065	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
BOQ57_17075	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
BOQ57_17090	COG3381	protein complex oligomerization
BOQ57_17110	COG3300	MHYT domain
BOQ57_17110	COG5001	Diguanylate cyclase
BOQ57_17120	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BOQ57_17125	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
BOQ57_17130	COG0511	ligase activity, forming carbon-carbon bonds
BOQ57_17135	COG0439	Biotin carboxylase
BOQ57_17145	COG4145	pantothenate transmembrane transporter activity
BOQ57_17150	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BOQ57_17150	COG1263	PTS System
BOQ57_17150	COG2190	(PTS) system
BOQ57_17155	COG0583	DNA-binding transcription factor activity
BOQ57_17160	COG0604	alcohol dehydrogenase
BOQ57_17165	COG2264	protein methyltransferase activity
BOQ57_17190	COG0778	Nitroreductase
BOQ57_17195	COG1902	pentaerythritol trinitrate reductase activity
BOQ57_17195	COG0446	pyridine nucleotide-disulphide oxidoreductase
BOQ57_17200	COG0616	signal peptide processing
BOQ57_17220	COG3139	Protein of unknown function (DUF1315)
BOQ57_17225	COG0252	asparaginase activity
BOQ57_17230	COG0786	glutamate:sodium symporter activity
BOQ57_17240	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
BOQ57_17245	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
BOQ57_17250	COG0384	phenazine biosynthesis protein PhzF
BOQ57_17255	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BOQ57_17260	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BOQ57_17265	COG0175	sulfate reduction
BOQ57_17270	COG2113	Glycine betaine
BOQ57_17275	COG4176	ABC-type proline glycine betaine transport system permease component
BOQ57_17280	COG4175	Glycine betaine
BOQ57_17290	COG3610	response to peptide
BOQ57_17295	COG2966	Psort location CytoplasmicMembrane, score
BOQ57_17305	COG0521	Mo-molybdopterin cofactor biosynthetic process
BOQ57_17315	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BOQ57_17320	COG1028	Short-chain dehydrogenase reductase Sdr
BOQ57_17365	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
BOQ57_17380	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BOQ57_17385	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BOQ57_17420	COG1858	cytochrome C peroxidase
BOQ57_17430	COG2313	pseudouridylate synthase activity
BOQ57_17435	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BOQ57_17440	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BOQ57_17440	COG2146	nitrite reductase [NAD(P)H] activity
BOQ57_17445	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BOQ57_17445	COG2146	nitrite reductase [NAD(P)H] activity
BOQ57_17450	COG1116	anion transmembrane transporter activity
BOQ57_17455	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BOQ57_17460	COG1116	anion transmembrane transporter activity
BOQ57_17460	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BOQ57_17475	COG0243	molybdopterin cofactor binding
BOQ57_17500	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
BOQ57_17520	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
BOQ57_17525	COG2195	Cleaves the N-terminal amino acid of tripeptides
BOQ57_17530	COG4608	Belongs to the ABC transporter superfamily
BOQ57_17535	COG0444	Belongs to the ABC transporter superfamily
BOQ57_17545	COG4239	(ABC) transporter, permease
BOQ57_17550	COG4174	ABC transporter (Permease)
BOQ57_17565	COG0811	peptide transport
BOQ57_17570	COG0811	peptide transport
BOQ57_17575	COG0848	biopolymer transport protein
BOQ57_17625	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BOQ57_17630	COG0840	transmembrane signaling receptor activity
BOQ57_17640	COG1278	Cold shock
BOQ57_17680	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
BOQ57_17685	COG1162	GTPase activity
BOQ57_17690	COG0688	phosphatidylethanolamine metabolic process
BOQ57_17695	COG4628	conserved protein (DUF2132)
BOQ57_17710	COG3059	membrane
BOQ57_17715	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BOQ57_17720	COG2207	Transcriptional regulator
BOQ57_17730	COG5001	Diguanylate cyclase
BOQ57_17730	COG3300	MHYT domain
BOQ57_17735	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
BOQ57_17745	COG4412	M6 family metalloprotease domain protein
BOQ57_17745	COG3291	Pkd domain containing protein
BOQ57_17755	COG5001	Diguanylate cyclase
BOQ57_17755	COG2203	Gaf domain
BOQ57_17755	COG3706	GGDEF domain
BOQ57_17755	COG4251	negative regulation of phosphorylation
BOQ57_17765	COG3039	Transposase
BOQ57_17815	COG4974	Belongs to the 'phage' integrase family
BOQ57_17830	COG0582	viral genome integration into host DNA
BOQ57_17850	COG1132	(ABC) transporter
BOQ57_17860	COG2897	thiosulfate sulfurtransferase activity
BOQ57_17865	COG2066	Belongs to the glutaminase family
BOQ57_17870	COG3171	Protein conserved in bacteria
BOQ57_17875	COG0220	tRNA (guanine-N7-)-methyltransferase activity
BOQ57_17880	COG4935	Belongs to the peptidase S8 family
BOQ57_17880	COG2234	aminopeptidase activity
BOQ57_17885	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BOQ57_17890	COG2200	EAL domain
BOQ57_17895	COG1090	epimerase
BOQ57_17900	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
BOQ57_17905	COG4181	ATPase activity
BOQ57_17910	COG2755	lipolytic protein G-D-S-L family
BOQ57_17915	COG0835	chemotaxis
BOQ57_17915	COG0784	Response regulator, receiver
BOQ57_18100	COG2985	domain, Protein
BOQ57_18100	COG0569	domain protein
BOQ57_18105	COG1272	protein, Hemolysin III
BOQ57_18110	COG0076	glutamate decarboxylase activity
BOQ57_18115	COG2917	probably involved in intracellular septation
BOQ57_18120	COG2350	Protein conserved in bacteria
BOQ57_18130	COG1555	photosystem II stabilization
BOQ57_18135	COG1210	Utp--glucose-1-phosphate uridylyltransferase
BOQ57_18140	COG3104	oligopeptide transport
BOQ57_18145	COG0745	RESPONSE REGULATOR receiver
BOQ57_18175	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BOQ57_18190	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
BOQ57_18205	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
BOQ57_18220	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
BOQ57_18270	COG2003	Belongs to the UPF0758 family
BOQ57_18295	COG1484	DNA-dependent DNA replication
BOQ57_18300	COG4584	PFAM Integrase catalytic
BOQ57_18325	COG3311	Transcriptional regulator
BOQ57_18345	COG1280	lysine exporter protein (LysE YggA)
BOQ57_18370	COG0316	Belongs to the HesB IscA family
BOQ57_18380	COG0038	chloride channel
BOQ57_18385	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
BOQ57_18400	COG0671	phosphoesterase, PA-phosphatase related
BOQ57_18410	COG3437	response regulator, receiver
BOQ57_18410	COG0784	Response regulator, receiver
BOQ57_18420	COG2076	Multidrug Resistance protein
BOQ57_18430	COG0346	lactoylglutathione lyase activity
BOQ57_18435	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BOQ57_18440	COG1643	Atp-dependent helicase
BOQ57_18450	COG1489	DNA binding
BOQ57_18455	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
BOQ57_18460	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BOQ57_18475	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
BOQ57_18480	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
BOQ57_18500	COG1924	4 iron, 4 sulfur cluster binding
BOQ57_18505	COG1775	2-hydroxyglutaryl-CoA dehydratase, D-component
BOQ57_18510	COG0842	Transport permease protein
BOQ57_18515	COG1131	(ABC) transporter
BOQ57_18530	COG0163	prenyltransferase activity
BOQ57_18535	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
BOQ57_18540	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
BOQ57_18555	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
BOQ57_18590	COG0840	transmembrane signaling receptor activity
BOQ57_18615	COG0529	Catalyzes the synthesis of activated sulfate
BOQ57_18620	COG0471	metal ion transport
BOQ57_18620	COG3273	potassium ion transport
BOQ57_18625	COG2895	sulfate adenylyltransferase (ATP) activity
BOQ57_18630	COG0175	sulfate reduction
BOQ57_18635	COG1648	precorrin-2 dehydrogenase activity
BOQ57_18635	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
BOQ57_18640	COG0330	HflC and HflK could
BOQ57_18645	COG1585	Membrane protein implicated in regulation of membrane protease activity
BOQ57_18650	COG0517	IMP dehydrogenase activity
BOQ57_18650	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
BOQ57_18655	COG0488	(ABC) transporter
BOQ57_18665	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
BOQ57_18670	COG0583	DNA-binding transcription factor activity
BOQ57_18705	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BOQ57_18715	COG0668	transmembrane transport
BOQ57_18725	COG2731	YhcH YjgK YiaL family protein
BOQ57_18740	COG1794	racemase activity, acting on amino acids and derivatives
BOQ57_18755	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BOQ57_18780	COG0733	neurotransmitter:sodium symporter activity
BOQ57_18790	COG0733	neurotransmitter:sodium symporter activity
BOQ57_18805	COG0561	phosphatase activity
BOQ57_18820	COG1522	sequence-specific DNA binding
BOQ57_18835	COG1846	Transcriptional regulator
BOQ57_18840	COG1764	response to oxidative stress
BOQ57_18845	COG2130	NADP-dependent
BOQ57_18850	COG1051	belongs to the nudix hydrolase family
BOQ57_18870	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
BOQ57_18875	COG1640	4-alpha-glucanotransferase
BOQ57_18880	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
BOQ57_18885	COG0676	glucose-6-phosphate 1-epimerase activity
BOQ57_18890	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
BOQ57_18895	COG0840	transmembrane signaling receptor activity
BOQ57_18970	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
BOQ57_18975	COG2885	chlorophyll binding
BOQ57_18980	COG0823	Involved in the tonB-independent uptake of proteins
BOQ57_18995	COG0811	peptide transport
BOQ57_19000	COG0824	Thioesterase
BOQ57_19005	COG3790	cyd operon protein YbgE
BOQ57_19010	COG4890	Cyd operon protein YbgT
BOQ57_19015	COG1294	oxidase, subunit
BOQ57_19020	COG1271	oxidase subunit
BOQ57_19025	COG2255	four-way junction helicase activity
BOQ57_19030	COG0632	four-way junction helicase activity
BOQ57_19035	COG0840	transmembrane signaling receptor activity
BOQ57_19040	COG0442	prolyl-tRNA aminoacylation
BOQ57_19045	COG4221	oxidoreductase activity
BOQ57_19060	COG1024	Enoyl-CoA hydratase
BOQ57_19080	COG4166	transmembrane transport
BOQ57_19095	COG1872	DUF167
BOQ57_19100	COG0762	integral membrane protein
BOQ57_19105	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
BOQ57_19110	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
BOQ57_19125	COG3022	response to hydroperoxide
BOQ57_19130	COG0513	Belongs to the DEAD box helicase family
BOQ57_19135	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
BOQ57_19160	COG0735	belongs to the Fur family
BOQ57_19165	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BOQ57_19175	COG0776	regulation of translation
BOQ57_19180	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
BOQ57_19205	COG0560	Phosphoserine phosphatase
BOQ57_19215	COG3447	MASE1 domain protein
BOQ57_19215	COG5001	Diguanylate cyclase
BOQ57_19215	COG5002	protein histidine kinase activity
BOQ57_19220	COG0813	purine-nucleoside phosphorylase activity
BOQ57_19225	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
BOQ57_19230	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
BOQ57_19235	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
BOQ57_19245	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
BOQ57_19250	COG0084	hydrolase, TatD family'
BOQ57_19265	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BOQ57_19270	COG0004	ammonium transporteR
BOQ57_19280	COG1196	nuclear chromosome segregation
BOQ57_19310	COG0582	viral genome integration into host DNA
BOQ57_19325	COG0795	lipopolysaccharide-transporting ATPase activity
BOQ57_19330	COG0795	lipopolysaccharide-transporting ATPase activity
BOQ57_19335	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
BOQ57_19340	COG2927	DNA polymerase III (CHI subunit)
BOQ57_19345	COG0525	valine-tRNA ligase activity
BOQ57_19350	COG1253	flavin adenine dinucleotide binding
BOQ57_19355	COG0586	Pfam SNARE associated Golgi protein
BOQ57_19360	COG1686	Belongs to the peptidase S11 family
BOQ57_19400	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
BOQ57_19405	COG0527	aspartate kinase activity
BOQ57_19410	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
BOQ57_19420	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
BOQ57_19425	COG1546	Belongs to the CinA family
BOQ57_19430	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
BOQ57_19450	COG3068	Protein conserved in bacteria
BOQ57_19460	COG0739	heme binding
BOQ57_19480	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
BOQ57_19485	COG1121	(ABC) transporter
BOQ57_19490	COG1108	ABC-type Mn2 Zn2 transport systems permease components
BOQ57_19495	COG0583	DNA-binding transcription factor activity
BOQ57_19500	COG0697	spore germination
BOQ57_19505	COG1573	uracil-dna glycosylase
BOQ57_19510	COG2962	Rard protein
BOQ57_19520	COG2827	Endonuclease containing a URI domain
BOQ57_19535	COG1842	Phage shock protein A
BOQ57_19540	COG0204	Acyl-transferase
BOQ57_19565	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BOQ57_19605	COG0583	DNA-binding transcription factor activity
BOQ57_19620	COG0187	DNA topoisomerase II activity
BOQ57_19625	COG1289	transmembrane transporter activity
BOQ57_19630	COG1566	PFAM secretion protein HlyD family protein
BOQ57_19645	COG1051	belongs to the nudix hydrolase family
BOQ57_19650	COG3150	esterase
BOQ57_19660	COG3151	Protein conserved in bacteria
BOQ57_19665	COG0494	nUDIX hydrolase
BOQ57_19670	COG1538	Outer membrane efflux protein
BOQ57_19675	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
BOQ57_19675	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
BOQ57_19680	COG1560	Kdo2-lipid A biosynthetic process
BOQ57_19695	COG1392	Phosphate transport regulator
BOQ57_19700	COG0306	phosphate transporter
BOQ57_19705	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
BOQ57_19735	COG0583	DNA-binding transcription factor activity
BOQ57_19740	COG1380	Effector of murein hydrolase LrgA
BOQ57_19745	COG1346	cytolysis
BOQ57_19760	COG0617	tRNA 3'-terminal CCA addition
BOQ57_19765	COG3267	Type II secretory pathway component ExeA
BOQ57_19765	COG3409	Peptidoglycan-binding domain 1 protein
BOQ57_19775	COG1194	a g-specific adenine glycosylase
BOQ57_19780	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
BOQ57_19790	COG3111	PFAM Bacterial OB fold (BOF) protein
BOQ57_19795	COG3240	lipase activity
BOQ57_19805	COG2885	chlorophyll binding
BOQ57_19805	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
BOQ57_19810	COG3009	Protein conserved in bacteria
BOQ57_19815	COG3008	intermembrane lipid transfer
BOQ57_19815	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
BOQ57_19820	COG2995	paraquat-inducible protein a
BOQ57_19830	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BOQ57_19840	COG4251	negative regulation of phosphorylation
BOQ57_19840	COG5001	Diguanylate cyclase
BOQ57_19840	COG3706	GGDEF domain
BOQ57_19840	COG2203	Gaf domain
BOQ57_19845	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BOQ57_19850	COG2813	Specifically methylates the guanine in position
BOQ57_19855	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
BOQ57_19860	COG0297	glycogen (starch) synthase activity
BOQ57_19900	COG1757	Na H antiporter
BOQ57_19905	COG0583	DNA-binding transcription factor activity
BOQ57_19910	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
BOQ57_19915	COG3842	ATPase activity
BOQ57_19920	COG1176	ABC-type spermidine putrescine transport system, permease component I
BOQ57_19925	COG1177	transmembrane transport
BOQ57_19930	COG1012	belongs to the aldehyde dehydrogenase family
BOQ57_19940	COG5006	permease, DMT superfamily
BOQ57_19945	COG1522	sequence-specific DNA binding
BOQ57_19950	COG0110	maltose O-acetyltransferase activity
BOQ57_19955	COG0366	Alpha amylase catalytic
BOQ57_19960	COG1263	PTS System
BOQ57_19960	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BOQ57_19980	COG0252	asparaginase activity
BOQ57_19995	COG1803	Methylglyoxal synthase
BOQ57_20020	COG1444	tRNA N-acetyltransferase activity
BOQ57_20030	COG0784	Response regulator, receiver
BOQ57_20030	COG0835	chemotaxis
BOQ57_20075	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
BOQ57_20080	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
BOQ57_20095	COG0477	Major facilitator Superfamily
BOQ57_20100	COG0523	cobalamin synthesis protein
BOQ57_20110	COG1280	lysine exporter protein (LysE YggA)
BOQ57_20120	COG2200	EAL domain
BOQ57_20125	COG1049	propionate catabolic process, 2-methylcitrate cycle
BOQ57_20130	COG1752	Esterase of the alpha-beta hydrolase superfamily
BOQ57_20135	COG0840	transmembrane signaling receptor activity
BOQ57_20140	COG0840	transmembrane signaling receptor activity
BOQ57_20150	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BOQ57_20155	COG0508	dehydrogenase complex catalyzes the overall conversion of
BOQ57_20160	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
BOQ57_20165	COG2186	Transcriptional regulator
BOQ57_20195	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BOQ57_20200	COG1459	type II secretion system
BOQ57_20215	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
BOQ57_20220	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
BOQ57_20225	COG0494	nUDIX hydrolase
BOQ57_20235	COG0653	protein targeting
BOQ57_20245	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
BOQ57_20250	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
BOQ57_20255	COG0849	cell division
BOQ57_20260	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
BOQ57_20265	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
BOQ57_20270	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
BOQ57_20275	COG0772	Belongs to the SEDS family
BOQ57_20280	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
BOQ57_20285	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BOQ57_20290	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
BOQ57_20300	COG0768	penicillin binding
BOQ57_20305	COG3116	cell division
BOQ57_20310	COG0275	rRNA processing
BOQ57_20315	COG2001	Belongs to the MraZ family
BOQ57_20325	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
BOQ57_20330	COG3107	peptidoglycan biosynthetic process
BOQ57_20335	COG0792	nuclease activity
BOQ57_20340	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
BOQ57_20345	COG2823	Periplasmic or secreted lipoprotein
BOQ57_20350	COG2969	positive regulation of protein catabolic process
BOQ57_20355	COG0625	glutathione transferase activity
BOQ57_20360	COG2857	Cytochrome c1
BOQ57_20365	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
BOQ57_20370	COG0723	plastoquinol--plastocyanin reductase activity
BOQ57_20375	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
BOQ57_20380	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
BOQ57_20385	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
BOQ57_20395	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BOQ57_20400	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BOQ57_20430	COG3964	amidohydrolase
BOQ57_20445	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BOQ57_20445	COG3711	transcriptional antiterminator
BOQ57_20450	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BOQ57_20455	COG1660	Displays ATPase and GTPase activities
BOQ57_20460	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BOQ57_20470	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
BOQ57_20475	COG1137	ATPase activity
BOQ57_20480	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
BOQ57_20485	COG3117	lipopolysaccharide transmembrane transporter activity
BOQ57_20490	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
BOQ57_20495	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
BOQ57_20495	COG0517	IMP dehydrogenase activity
BOQ57_20500	COG1127	ABC transporter
BOQ57_20505	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
BOQ57_20510	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
BOQ57_20515	COG2854	intermembrane phospholipid transfer
BOQ57_20525	COG5007	Belongs to the BolA IbaG family
BOQ57_20530	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
BOQ57_20535	COG0312	modulator of DNA gyrase
BOQ57_20540	COG3028	Belongs to the UPF0307 family
BOQ57_20550	COG2926	Belongs to the UPF0265 family
BOQ57_20580	COG1396	sequence-specific DNA binding
BOQ57_20585	COG3135	benzoate transporter
BOQ57_20610	COG0840	transmembrane signaling receptor activity
BOQ57_20615	COG3047	cAMP biosynthetic process
BOQ57_20620	COG3706	GGDEF domain
BOQ57_20625	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
BOQ57_20630	COG2197	response regulator
BOQ57_20635	COG0629	single-stranded DNA binding
BOQ57_20655	COG1278	Cold shock
BOQ57_20665	COG4771	TonB-dependent receptor
BOQ57_20670	COG3706	GGDEF domain
BOQ57_20670	COG4251	negative regulation of phosphorylation
BOQ57_20670	COG2203	Gaf domain
BOQ57_20670	COG5001	Diguanylate cyclase
BOQ57_20680	COG0745	RESPONSE REGULATOR receiver
BOQ57_20715	COG0346	lactoylglutathione lyase activity
BOQ57_20725	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
BOQ57_20730	COG1074	ATP-dependent DNA helicase activity
BOQ57_20735	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
BOQ57_20740	COG2259	Doxx family
BOQ57_20745	COG1741	Belongs to the pirin family
BOQ57_20755	COG0583	DNA-binding transcription factor activity
BOQ57_20780	COG1175	transmembrane transport
BOQ57_20790	COG3842	ATPase activity
BOQ57_20800	COG3706	GGDEF domain
BOQ57_20820	COG1247	-acetyltransferase
BOQ57_20825	COG0753	catalase activity
BOQ57_20850	COG0494	nUDIX hydrolase
BOQ57_20855	COG0628	permease
BOQ57_20870	COG2957	Belongs to the agmatine deiminase family
BOQ57_20875	COG0583	DNA-binding transcription factor activity
BOQ57_20880	COG3284	Transcriptional regulator
BOQ57_20895	COG1461	Dihydroxyacetone kinase
BOQ57_20900	COG2376	Dihydroxyacetone kinase
BOQ57_20905	COG2252	PERMEase
BOQ57_20940	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
BOQ57_20945	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
BOQ57_20950	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
BOQ57_20955	COG0049	tRNA binding
BOQ57_20960	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
BOQ57_20965	COG2168	tRNA wobble position uridine thiolation
BOQ57_20970	COG2923	Belongs to the DsrF TusC family
BOQ57_20980	COG0251	oxidation-reduction process
BOQ57_20985	COG2964	Protein conserved in bacteria
BOQ57_20990	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
BOQ57_20995	COG0085	RNA polymerase activity
BOQ57_21000	COG0222	ribosome binding
BOQ57_21005	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
BOQ57_21010	COG0081	regulation of translation
BOQ57_21015	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
BOQ57_21020	COG0250	Participates in transcription elongation, termination and antitermination
BOQ57_21025	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
BOQ57_21035	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
BOQ57_21060	COG0812	UDP-N-acetylmuramate dehydrogenase activity
BOQ57_21065	COG0569	domain protein
BOQ57_21070	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
BOQ57_21090	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BOQ57_21095	COG3005	denitrification pathway
BOQ57_21100	COG0243	molybdopterin cofactor binding
BOQ57_21110	COG2205	protein histidine kinase activity
BOQ57_21115	COG0745	RESPONSE REGULATOR receiver
BOQ57_21130	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
BOQ57_21145	COG2204	response regulator
BOQ57_21155	COG2205	protein histidine kinase activity
BOQ57_21175	COG5413	integral membrane protein
BOQ57_21185	COG1522	sequence-specific DNA binding
BOQ57_21190	COG2502	aspartate--ammonia ligase
BOQ57_21195	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
BOQ57_21200	COG0542	response to heat
BOQ57_21210	COG0564	pseudouridine synthase activity
BOQ57_21215	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BOQ57_21220	COG0446	pyridine nucleotide-disulphide oxidoreductase
BOQ57_21230	COG3681	Belongs to the UPF0597 family
BOQ57_21240	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
BOQ57_21245	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
BOQ57_21250	COG1979	alcohol dehydrogenase
BOQ57_21255	COG2207	Transcriptional regulator
BOQ57_21260	COG3040	lipid binding
BOQ57_21270	COG0688	phosphatidylethanolamine metabolic process
BOQ57_21285	COG0540	Belongs to the ATCase OTCase family
BOQ57_21290	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
BOQ57_21295	COG1438	arginine binding
BOQ57_21300	COG1288	antiporter activity
BOQ57_21305	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
BOQ57_21330	COG0840	transmembrane signaling receptor activity
BOQ57_21350	COG3250	beta-galactosidase activity
BOQ57_21355	COG1609	Transcriptional regulator
BOQ57_21360	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
BOQ57_21370	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
BOQ57_21375	COG2017	converts alpha-aldose to the beta-anomer
BOQ57_21380	COG0667	Aldo Keto reductase
BOQ57_21385	COG1968	undecaprenyl-diphosphatase activity
BOQ57_21390	COG3806	Anti-sigma factor
BOQ57_21395	COG1595	DNA-templated transcription, initiation
BOQ57_21415	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
BOQ57_21420	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
BOQ57_21425	COG0477	Major facilitator Superfamily
BOQ57_21440	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BOQ57_21445	COG1131	(ABC) transporter
BOQ57_21450	COG0842	Transport permease protein
BOQ57_21455	COG0842	Transport permease protein
BOQ57_21460	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BOQ57_21465	COG2146	nitrite reductase [NAD(P)H] activity
BOQ57_21470	COG2116	formate transmembrane transporter activity
BOQ57_21475	COG1648	precorrin-2 dehydrogenase activity
BOQ57_21475	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
BOQ57_21480	COG2239	Acts as a magnesium transporter
BOQ57_21490	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
BOQ57_21495	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
BOQ57_21505	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
BOQ57_21515	COG0514	ATP-dependent DNA helicase (RecQ)
BOQ57_21520	COG2050	protein possibly involved in aromatic compounds catabolism
BOQ57_21540	COG2258	MOSC domain
BOQ57_21545	COG1177	transmembrane transport
BOQ57_21550	COG1176	ABC-type spermidine putrescine transport system, permease component I
BOQ57_21555	COG3842	ATPase activity
BOQ57_21575	COG0174	glutamine synthetase
BOQ57_21580	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
BOQ57_21595	COG3045	CreA protein
BOQ57_21600	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BOQ57_21605	COG0443	Heat shock 70 kDa protein
BOQ57_21620	COG0366	Alpha amylase catalytic
BOQ57_21635	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BOQ57_21640	COG0745	RESPONSE REGULATOR receiver
BOQ57_21645	COG2205	protein histidine kinase activity
BOQ57_21655	COG0281	malic enzyme
BOQ57_21660	COG0702	epimerase
BOQ57_21665	COG0254	rRNA binding
BOQ57_21670	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
BOQ57_21690	COG0129	dihydroxy-acid dehydratase activity
BOQ57_21695	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BOQ57_21700	COG3978	acetolactate synthase activity
BOQ57_21710	COG0606	chelatase, subunit chli
BOQ57_21715	COG0204	Acyl-transferase
BOQ57_21720	COG0204	Acyl-transferase
BOQ57_21725	COG1683	Conserved Protein
BOQ57_21735	COG1335	isochorismatase
BOQ57_21745	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BOQ57_21750	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
BOQ57_21760	COG3084	Protein conserved in bacteria
BOQ57_21765	COG4251	negative regulation of phosphorylation
BOQ57_21765	COG2203	Gaf domain
BOQ57_21765	COG5001	Diguanylate cyclase
BOQ57_21765	COG3706	GGDEF domain
BOQ57_21770	COG0789	Transcriptional regulator
BOQ57_21780	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
BOQ57_21785	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
BOQ57_21790	COG1561	YicC-like family, N-terminal region
BOQ57_21810	COG3306	glycosyltransferase involved in LPS biosynthesis
BOQ57_21825	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BOQ57_21835	COG0156	8-amino-7-oxononanoate synthase activity
BOQ57_21840	COG1063	alcohol dehydrogenase
BOQ57_21845	COG3245	cytochrome
BOQ57_21855	COG0210	DNA helicase
BOQ57_21860	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
BOQ57_21865	COG2166	iron-sulfur cluster assembly
BOQ57_21870	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
BOQ57_21905	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
BOQ57_21910	COG4206	TonB-dependent receptor
BOQ57_21915	COG0583	DNA-binding transcription factor activity
BOQ57_21930	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
BOQ57_21935	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
BOQ57_21940	COG2223	nitrite transmembrane transporter activity
BOQ57_21945	COG3279	Response regulator of the LytR AlgR family
BOQ57_21950	COG3275	phosphorelay sensor kinase activity
BOQ57_21960	COG2205	protein histidine kinase activity
BOQ57_21960	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BOQ57_21980	COG3188	usher protein
BOQ57_22000	COG2223	nitrite transmembrane transporter activity
BOQ57_22005	COG2081	HI0933 family
BOQ57_22010	COG1528	Iron-storage protein
BOQ57_22015	COG3706	GGDEF domain
BOQ57_22020	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
BOQ57_22025	COG0589	response to stress
BOQ57_22060	COG3642	lipopolysaccharide core region biosynthetic process
BOQ57_22065	COG0859	PFAM glycosyl transferase family 9
BOQ57_22080	COG1758	RNA polymerase activity
BOQ57_22085	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BOQ57_22090	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BOQ57_22095	COG2267	carboxylic ester hydrolase activity
BOQ57_22100	COG0561	phosphatase activity
BOQ57_22120	COG1840	ABC-type Fe3 transport system, periplasmic component
BOQ57_22125	COG2271	Major facilitator Superfamily
BOQ57_22160	COG1309	transcriptional regulator
BOQ57_22165	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BOQ57_22170	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BOQ57_22175	COG4191	Histidine kinase
BOQ57_22175	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BOQ57_22180	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BOQ57_22205	COG2205	protein histidine kinase activity
BOQ57_22210	COG0745	RESPONSE REGULATOR receiver
BOQ57_22215	COG2814	Major facilitator Superfamily
BOQ57_22230	COG3977	Valine--pyruvate aminotransferase
BOQ57_22235	COG0071	Belongs to the small heat shock protein (HSP20) family
BOQ57_22240	COG0071	Belongs to the small heat shock protein (HSP20) family
BOQ57_22245	COG2378	regulation of single-species biofilm formation
BOQ57_22255	COG0187	DNA topoisomerase II activity
BOQ57_22260	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
BOQ57_22265	COG0592	DNA-directed DNA polymerase activity