BOQ57_00005 SM00382 ATPases associated with a variety of cellular activities BOQ57_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain BOQ57_00010 SM00062 Bacterial periplasmic substrate-binding proteins BOQ57_00010 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BOQ57_00020 SM00382 ATPases associated with a variety of cellular activities BOQ57_00035 SM01234 BOQ57_00035 BOQ57_00060 SM00382 ATPases associated with a variety of cellular activities BOQ57_00065 SM00382 ATPases associated with a variety of cellular activities BOQ57_00080 SM01228 BOQ57_00080 BOQ57_00095 SM00470 ParB-like nuclease domain BOQ57_00135 SM00382 ATPases associated with a variety of cellular activities BOQ57_00160 SM00387 Histidine kinase-like ATPases BOQ57_00160 SM00388 His Kinase A (phosphoacceptor) domain BOQ57_00165 SM00448 cheY-homologous receiver domain BOQ57_00165 SM00862 Transcriptional regulatory protein, C terminal BOQ57_00170 SM00420 helix_turn_helix, Deoxyribose operon repressor BOQ57_00170 SM01134 BOQ57_00170 BOQ57_00180 SM00421 helix_turn_helix, Lux Regulon BOQ57_00295 SM01004 Delta-aminolevulinic acid dehydratase BOQ57_00305 SM00052 Putative diguanylate phosphodiesterase BOQ57_00305 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BOQ57_00305 SM00091 PAS domain BOQ57_00305 SM00267 diguanylate cyclase BOQ57_00325 SM00487 DEAD-like helicases superfamily BOQ57_00325 SM00490 helicase superfamily c-terminal domain BOQ57_00335 SM00357 Cold shock protein domain BOQ57_00335 SM00382 ATPases associated with a variety of cellular activities BOQ57_00335 SM00959 Rho termination factor, N-terminal domain BOQ57_00370 SM00450 Rhodanese Homology Domain BOQ57_00380 SM00342 helix_turn_helix, arabinose operon control protein BOQ57_00385 SM00382 ATPases associated with a variety of cellular activities BOQ57_00390 SM00382 ATPases associated with a variety of cellular activities BOQ57_00410 SM00354 helix_turn _helix lactose operon repressor BOQ57_00425 SM00345 helix_turn_helix gluconate operon transcriptional repressor BOQ57_00425 SM00866 BOQ57_00425 BOQ57_00430 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BOQ57_00430 SM00382 ATPases associated with a variety of cellular activities BOQ57_00435 SM00849 Metallo-beta-lactamase superfamily BOQ57_00495 SM00836 DALR anticodon binding domain BOQ57_00510 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_00510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_00540 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_00540 SM00387 Histidine kinase-like ATPases BOQ57_00540 SM00388 His Kinase A (phosphoacceptor) domain BOQ57_00545 SM00448 cheY-homologous receiver domain BOQ57_00545 SM00862 Transcriptional regulatory protein, C terminal BOQ57_00610 SM00881 CoA binding domain BOQ57_00690 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BOQ57_00690 SM01232 BOQ57_00690 BOQ57_00740 SM00354 helix_turn _helix lactose operon repressor BOQ57_00745 SM00829 Enoylreductase BOQ57_00770 SM00563 Phosphate acyltransferases BOQ57_00805 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_00805 SM00387 Histidine kinase-like ATPases BOQ57_00805 SM00388 His Kinase A (phosphoacceptor) domain BOQ57_00810 SM00448 cheY-homologous receiver domain BOQ57_00810 SM00862 Transcriptional regulatory protein, C terminal BOQ57_00820 SM00971 Serine acetyltransferase, N-terminal BOQ57_00845 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BOQ57_00845 SM00474 3'-5' exonuclease BOQ57_00845 SM00475 5'-3' exonuclease BOQ57_00845 SM00482 DNA polymerase A domain BOQ57_00890 SM00354 helix_turn _helix lactose operon repressor BOQ57_00895 SM01038 Beta galactosidase small chain BOQ57_00940 SM00829 Enoylreductase BOQ57_00960 SM00382 ATPases associated with a variety of cellular activities BOQ57_01015 SM00326 Src homology 3 domains BOQ57_01070 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_01070 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_01075 SM00831 Cation transporter/ATPase, N-terminus BOQ57_01085 SM00342 helix_turn_helix, arabinose operon control protein BOQ57_01105 SM00530 Helix-turn-helix XRE-family like proteins BOQ57_01125 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BOQ57_01125 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BOQ57_01180 SM00257 Lysin motif BOQ57_01200 SM01001 AIR carboxylase BOQ57_01250 SM00729 Elongator protein 3, MiaB family, Radical SAM BOQ57_01260 SM00382 ATPases associated with a variety of cellular activities BOQ57_01260 SM00448 cheY-homologous receiver domain BOQ57_01265 SM00091 PAS domain BOQ57_01265 SM00387 Histidine kinase-like ATPases BOQ57_01265 SM00388 His Kinase A (phosphoacceptor) domain BOQ57_01275 SM01230 BOQ57_01275 BOQ57_01315 SM00487 DEAD-like helicases superfamily BOQ57_01315 SM00490 helicase superfamily c-terminal domain BOQ57_01320 SM00155 Phospholipase D. Active site motifs. BOQ57_01345 SM00354 helix_turn _helix lactose operon repressor BOQ57_01365 SM00450 Rhodanese Homology Domain BOQ57_01410 SM00316 Ribosomal protein S1-like RNA-binding domain BOQ57_01410 SM00732 Likely ribonuclease with RNase H fold. BOQ57_01420 SM00448 cheY-homologous receiver domain BOQ57_01420 SM00862 Transcriptional regulatory protein, C terminal BOQ57_01425 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_01425 SM00387 Histidine kinase-like ATPases BOQ57_01425 SM00388 His Kinase A (phosphoacceptor) domain BOQ57_01435 SM01403 BOQ57_01435 BOQ57_01455 SM01382 BOQ57_01455 BOQ57_01455 SM01383 BOQ57_01455 BOQ57_01470 SM00322 K homology RNA-binding domain BOQ57_01490 SM01374 BOQ57_01490 BOQ57_01560 SM00363 S4 RNA-binding domain BOQ57_01560 SM01390 BOQ57_01560 BOQ57_01565 SM00662 RNA polymerases D BOQ57_01725 SM00062 Bacterial periplasmic substrate-binding proteins BOQ57_01730 SM00155 Phospholipase D. Active site motifs. BOQ57_01760 SM00382 ATPases associated with a variety of cellular activities BOQ57_01760 SM00962 SRP54-type protein, GTPase domain BOQ57_01760 SM00963 SRP54-type protein, helical bundle domain BOQ57_01765 SM00382 ATPases associated with a variety of cellular activities BOQ57_01780 SM00947 Carbonic anhydrase BOQ57_01785 SM00345 helix_turn_helix gluconate operon transcriptional repressor BOQ57_01785 SM00866 BOQ57_01785 BOQ57_01815 SM00052 Putative diguanylate phosphodiesterase BOQ57_01820 SM00052 Putative diguanylate phosphodiesterase BOQ57_01820 SM00267 diguanylate cyclase BOQ57_01850 SM00965 Secretin and TonB N terminus short domain BOQ57_01865 SM00382 ATPases associated with a variety of cellular activities BOQ57_01935 SM00316 Ribosomal protein S1-like RNA-binding domain BOQ57_01945 SM00886 Stress responsive A/B Barrel Domain BOQ57_02005 SM00448 cheY-homologous receiver domain BOQ57_02005 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BOQ57_02010 SM00387 Histidine kinase-like ATPases BOQ57_02010 SM00388 His Kinase A (phosphoacceptor) domain BOQ57_02010 SM00448 cheY-homologous receiver domain BOQ57_02015 SM00331 Sigma factor PP2C-like phosphatases BOQ57_02015 SM00387 Histidine kinase-like ATPases BOQ57_02025 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BOQ57_02025 SM00091 PAS domain BOQ57_02030 SM00342 helix_turn_helix, arabinose operon control protein BOQ57_02070 SM01018 B12 binding domain BOQ57_02085 SM00388 His Kinase A (phosphoacceptor) domain BOQ57_02090 SM00448 cheY-homologous receiver domain BOQ57_02090 SM00862 Transcriptional regulatory protein, C terminal BOQ57_02110 SM00999 Aerolysin toxin BOQ57_02140 SM00876 Biotin and Thiamin Synthesis associated domain BOQ57_02170 SM00267 diguanylate cyclase BOQ57_02280 SM01219 BOQ57_02280 BOQ57_02320 SM00100 Cyclic nucleotide-monophosphate binding domain BOQ57_02350 SM00382 ATPases associated with a variety of cellular activities BOQ57_02360 SM00852 Probable molybdopterin binding domain BOQ57_02365 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BOQ57_02380 SM00344 helix_turn_helix ASNC type BOQ57_02400 SM00642 Alpha-amylase domain BOQ57_02540 SM00862 Transcriptional regulatory protein, C terminal BOQ57_02550 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BOQ57_02600 SM00487 DEAD-like helicases superfamily BOQ57_02600 SM00490 helicase superfamily c-terminal domain BOQ57_02645 SM00271 DnaJ molecular chaperone homology domain BOQ57_02680 SM00357 Cold shock protein domain BOQ57_02680 SM00955 BOQ57_02680 BOQ57_02695 SM00421 helix_turn_helix, Lux Regulon BOQ57_02730 SM00345 helix_turn_helix gluconate operon transcriptional repressor BOQ57_02730 SM00895 BOQ57_02730 BOQ57_02745 SM00363 S4 RNA-binding domain BOQ57_02760 SM00382 ATPases associated with a variety of cellular activities BOQ57_02810 SM00421 helix_turn_helix, Lux Regulon BOQ57_02845 SM00342 helix_turn_helix, arabinose operon control protein BOQ57_02875 SM00859 Semialdehyde dehydrogenase, NAD binding domain BOQ57_02920 SM01266 BOQ57_02920 BOQ57_02950 SM00382 ATPases associated with a variety of cellular activities BOQ57_02965 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_02965 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_02965 SM01049 BOQ57_02965 BOQ57_03000 SM00245 tail specific protease BOQ57_03080 SM00487 DEAD-like helicases superfamily BOQ57_03080 SM00490 helicase superfamily c-terminal domain BOQ57_03100 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_03170 SM00938 Nitrogen regulatory protein P-II BOQ57_03185 SM00382 ATPases associated with a variety of cellular activities BOQ57_03200 SM00382 ATPases associated with a variety of cellular activities BOQ57_03205 SM00062 Bacterial periplasmic substrate-binding proteins BOQ57_03205 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BOQ57_03230 SM00671 Sel1-like repeats. BOQ57_03245 SM01091 Transporter associated domain BOQ57_03255 SM00382 ATPases associated with a variety of cellular activities BOQ57_03255 SM00962 SRP54-type protein, GTPase domain BOQ57_03255 SM00963 SRP54-type protein, helical bundle domain BOQ57_03285 SM00927 DNA mismatch repair enzyme MutH BOQ57_03300 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BOQ57_03330 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BOQ57_03345 SM00904 Riboflavin kinase BOQ57_03425 SM00938 Nitrogen regulatory protein P-II BOQ57_03440 SM00267 diguanylate cyclase BOQ57_03445 SM00316 Ribosomal protein S1-like RNA-binding domain BOQ57_03445 SM00357 Cold shock protein domain BOQ57_03445 SM00955 BOQ57_03445 BOQ57_03450 SM00967 RNA 2'-O ribose methyltransferase substrate binding BOQ57_03515 SM00829 Enoylreductase BOQ57_03560 SM00382 ATPases associated with a variety of cellular activities BOQ57_03565 SM00327 von Willebrand factor (vWF) type A domain BOQ57_03570 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BOQ57_03570 SM00091 PAS domain BOQ57_03570 SM00267 diguanylate cyclase BOQ57_03575 SM00028 Tetratricopeptide repeats BOQ57_03575 SM00267 diguanylate cyclase BOQ57_03590 SM00347 helix_turn_helix multiple antibiotic resistance protein BOQ57_03600 SM00347 helix_turn_helix multiple antibiotic resistance protein BOQ57_03640 SM00849 Metallo-beta-lactamase superfamily BOQ57_03650 SM00986 Uracil DNA glycosylase superfamily BOQ57_03650 SM00987 UreE urease accessory protein, C-terminal domain BOQ57_03655 SM00487 DEAD-like helicases superfamily BOQ57_03655 SM00490 helicase superfamily c-terminal domain BOQ57_03745 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_03745 SM00387 Histidine kinase-like ATPases BOQ57_03745 SM00388 His Kinase A (phosphoacceptor) domain BOQ57_03750 SM00448 cheY-homologous receiver domain BOQ57_03750 SM00862 Transcriptional regulatory protein, C terminal BOQ57_03760 SM00382 ATPases associated with a variety of cellular activities BOQ57_03765 SM00062 Bacterial periplasmic substrate-binding proteins BOQ57_03770 SM00382 ATPases associated with a variety of cellular activities BOQ57_03810 SM00822 BOQ57_03810 BOQ57_03825 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_03825 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_03835 SM00287 Bacterial SH3 domain homologues BOQ57_03860 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BOQ57_03960 SM00358 Double-stranded RNA binding motif BOQ57_03960 SM00535 Ribonuclease III family BOQ57_04025 SM00420 helix_turn_helix, Deoxyribose operon repressor BOQ57_04025 SM01134 BOQ57_04025 BOQ57_04030 SM00644 BOQ57_04030 BOQ57_04040 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_04040 SM00387 Histidine kinase-like ATPases BOQ57_04040 SM00388 His Kinase A (phosphoacceptor) domain BOQ57_04040 SM00448 cheY-homologous receiver domain BOQ57_04050 SM00954 Region found in RelA / SpoT proteins BOQ57_04065 SM01192 BOQ57_04065 BOQ57_04065 SM01193 BOQ57_04065 BOQ57_04105 SM00257 Lysin motif BOQ57_04130 SM00400 zinc finger BOQ57_04130 SM00493 BOQ57_04130 BOQ57_04130 SM00766 DNA primase DnaG DnaB-binding BOQ57_04145 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BOQ57_04145 SM00632 BOQ57_04145 BOQ57_04145 SM00642 Alpha-amylase domain BOQ57_04160 SM01209 BOQ57_04160 BOQ57_04160 SM01210 BOQ57_04160 BOQ57_04165 SM00798 AICARFT/IMPCHase bienzyme BOQ57_04165 SM00851 MGS-like domain BOQ57_04170 SM00422 helix_turn_helix, mercury resistance BOQ57_04185 SM00729 Elongator protein 3, MiaB family, Radical SAM BOQ57_04260 SM00883 Chaperonin 10 Kd subunit BOQ57_04275 SM00052 Putative diguanylate phosphodiesterase BOQ57_04275 SM00267 diguanylate cyclase BOQ57_04290 SM00487 DEAD-like helicases superfamily BOQ57_04290 SM00490 helicase superfamily c-terminal domain BOQ57_04330 SM00670 Large family of predicted nucleotide-binding domains BOQ57_04335 SM00382 ATPases associated with a variety of cellular activities BOQ57_04370 SM01329 BOQ57_04370 BOQ57_04375 SM00917 LeuA allosteric (dimerisation) domain BOQ57_04385 SM00014 Acid phosphatase homologues BOQ57_04435 SM01130 BOQ57_04435 BOQ57_04480 SM00073 Histidine Phosphotransfer domain BOQ57_04480 SM00091 PAS domain BOQ57_04480 SM00387 Histidine kinase-like ATPases BOQ57_04480 SM00388 His Kinase A (phosphoacceptor) domain BOQ57_04480 SM00448 cheY-homologous receiver domain BOQ57_04485 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BOQ57_04495 SM00062 Bacterial periplasmic substrate-binding proteins BOQ57_04495 SM00073 Histidine Phosphotransfer domain BOQ57_04495 SM00091 PAS domain BOQ57_04495 SM00387 Histidine kinase-like ATPases BOQ57_04495 SM00388 His Kinase A (phosphoacceptor) domain BOQ57_04495 SM00448 cheY-homologous receiver domain BOQ57_04500 SM00052 Putative diguanylate phosphodiesterase BOQ57_04500 SM00448 cheY-homologous receiver domain BOQ57_04505 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_04505 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_04510 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BOQ57_04525 SM00382 ATPases associated with a variety of cellular activities BOQ57_04525 SM00930 BOQ57_04525 BOQ57_04560 SM00257 Lysin motif BOQ57_04560 SM00646 BOQ57_04560 BOQ57_04565 SM00853 MutL C terminal dimerisation domain BOQ57_04565 SM01340 BOQ57_04565 BOQ57_04585 SM00244 prohibitin homologues BOQ57_04590 SM00244 prohibitin homologues BOQ57_04640 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BOQ57_04650 SM00530 Helix-turn-helix XRE-family like proteins BOQ57_04665 SM00650 Ribosomal RNA adenine dimethylases BOQ57_04695 SM00271 DnaJ molecular chaperone homology domain BOQ57_04710 SM00382 ATPases associated with a variety of cellular activities BOQ57_04760 SM01133 BOQ57_04760 BOQ57_04780 SM00382 ATPases associated with a variety of cellular activities BOQ57_04835 SM00530 Helix-turn-helix XRE-family like proteins BOQ57_04845 SM00387 Histidine kinase-like ATPases BOQ57_04845 SM00388 His Kinase A (phosphoacceptor) domain BOQ57_04845 SM00448 cheY-homologous receiver domain BOQ57_04850 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BOQ57_04850 SM00495 Chitin-binding domain type 3 BOQ57_04850 SM00636 BOQ57_04850 BOQ57_04860 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BOQ57_04860 SM00495 Chitin-binding domain type 3 BOQ57_04870 SM00100 Cyclic nucleotide-monophosphate binding domain BOQ57_04870 SM00419 helix_turn_helix, cAMP Regulatory protein BOQ57_04930 SM00984 UDP binding domain BOQ57_04940 SM00267 diguanylate cyclase BOQ57_04950 SM00260 Two component signalling adaptor domain BOQ57_04950 SM00448 cheY-homologous receiver domain BOQ57_04975 SM00320 WD40 repeats BOQ57_04985 SM00382 ATPases associated with a variety of cellular activities BOQ57_04985 SM00448 cheY-homologous receiver domain BOQ57_05010 SM00052 Putative diguanylate phosphodiesterase BOQ57_05015 SM00978 BOQ57_05015 BOQ57_05020 SM00382 ATPases associated with a variety of cellular activities BOQ57_05025 SM01005 Alanine racemase, C-terminal domain BOQ57_05040 SM00052 Putative diguanylate phosphodiesterase BOQ57_05065 SM00421 helix_turn_helix, Lux Regulon BOQ57_05065 SM00448 cheY-homologous receiver domain BOQ57_05115 SM00448 cheY-homologous receiver domain BOQ57_05125 SM00138 Methyltransferase, chemotaxis proteins BOQ57_05130 SM00091 PAS domain BOQ57_05130 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_05130 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_05135 SM00260 Two component signalling adaptor domain BOQ57_05140 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_05140 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_05145 SM00073 Histidine Phosphotransfer domain BOQ57_05145 SM00260 Two component signalling adaptor domain BOQ57_05145 SM00387 Histidine kinase-like ATPases BOQ57_05145 SM01231 BOQ57_05145 BOQ57_05155 SM00448 cheY-homologous receiver domain BOQ57_05160 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_05200 SM00342 helix_turn_helix, arabinose operon control protein BOQ57_05200 SM00478 endonuclease III BOQ57_05200 SM01009 AlkA N-terminal domain BOQ57_05215 SM00463 Small MutS-related domain BOQ57_05245 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_05245 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_05275 SM00830 Chorismate mutase type II BOQ57_05310 SM00422 helix_turn_helix, mercury resistance BOQ57_05395 SM00421 helix_turn_helix, Lux Regulon BOQ57_05515 SM00900 BOQ57_05515 BOQ57_05555 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_05555 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_05585 SM01329 BOQ57_05585 BOQ57_05590 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BOQ57_05590 SM00475 5'-3' exonuclease BOQ57_05600 SM00267 diguanylate cyclase BOQ57_05605 SM00028 Tetratricopeptide repeats BOQ57_05685 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BOQ57_05730 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BOQ57_05740 SM00935 Outer membrane protein (OmpH-like) BOQ57_05770 SM00481 DNA polymerase alpha chain like domain BOQ57_05780 SM00862 Transcriptional regulatory protein, C terminal BOQ57_05815 SM00849 Metallo-beta-lactamase superfamily BOQ57_05850 SM00382 ATPases associated with a variety of cellular activities BOQ57_05865 SM00977 TilS substrate C-terminal domain BOQ57_05870 SM00267 diguanylate cyclase BOQ57_05895 SM00421 helix_turn_helix, Lux Regulon BOQ57_05895 SM00448 cheY-homologous receiver domain BOQ57_05905 SM00642 Alpha-amylase domain BOQ57_05930 SM00062 Bacterial periplasmic substrate-binding proteins BOQ57_05965 SM00771 ZipA, C-terminal domain (FtsZ-binding) BOQ57_05970 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BOQ57_05970 SM00292 breast cancer carboxy-terminal domain BOQ57_05970 SM00532 Ligase N family BOQ57_06005 SM00062 Bacterial periplasmic substrate-binding proteins BOQ57_06020 SM00347 helix_turn_helix multiple antibiotic resistance protein BOQ57_06035 SM00919 Malic enzyme, NAD binding domain BOQ57_06035 SM01274 BOQ57_06035 BOQ57_06040 SM00387 Histidine kinase-like ATPases BOQ57_06045 SM00448 cheY-homologous receiver domain BOQ57_06055 SM00342 helix_turn_helix, arabinose operon control protein BOQ57_06065 SM00382 ATPases associated with a variety of cellular activities BOQ57_06085 SM00448 cheY-homologous receiver domain BOQ57_06085 SM00862 Transcriptional regulatory protein, C terminal BOQ57_06090 SM00387 Histidine kinase-like ATPases BOQ57_06090 SM00388 His Kinase A (phosphoacceptor) domain BOQ57_06130 SM00382 ATPases associated with a variety of cellular activities BOQ57_06190 SM00267 diguanylate cyclase BOQ57_06205 SM00342 helix_turn_helix, arabinose operon control protein BOQ57_06210 SM00919 Malic enzyme, NAD binding domain BOQ57_06210 SM01274 BOQ57_06210 BOQ57_06235 SM00530 Helix-turn-helix XRE-family like proteins BOQ57_06250 SM00267 diguanylate cyclase BOQ57_06270 SM00729 Elongator protein 3, MiaB family, Radical SAM BOQ57_06285 SM00342 helix_turn_helix, arabinose operon control protein BOQ57_06335 SM00642 Alpha-amylase domain BOQ57_06355 SM00155 Phospholipase D. Active site motifs. BOQ57_06430 SM00448 cheY-homologous receiver domain BOQ57_06430 SM00862 Transcriptional regulatory protein, C terminal BOQ57_06435 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_06435 SM00387 Histidine kinase-like ATPases BOQ57_06435 SM00388 His Kinase A (phosphoacceptor) domain BOQ57_06460 SM00877 BOQ57_06460 BOQ57_06490 SM00877 BOQ57_06490 BOQ57_06495 SM00877 BOQ57_06495 BOQ57_06500 SM00877 BOQ57_06500 BOQ57_06510 SM00862 Transcriptional regulatory protein, C terminal BOQ57_06540 SM00481 DNA polymerase alpha chain like domain BOQ57_06580 SM00387 Histidine kinase-like ATPases BOQ57_06585 SM00448 cheY-homologous receiver domain BOQ57_06585 SM00862 Transcriptional regulatory protein, C terminal BOQ57_06590 SM00382 ATPases associated with a variety of cellular activities BOQ57_06600 SM00382 ATPases associated with a variety of cellular activities BOQ57_06625 SM00729 Elongator protein 3, MiaB family, Radical SAM BOQ57_06630 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BOQ57_06660 SM00382 ATPases associated with a variety of cellular activities BOQ57_06720 SM00382 ATPases associated with a variety of cellular activities BOQ57_06720 SM00962 SRP54-type protein, GTPase domain BOQ57_06735 SM00448 cheY-homologous receiver domain BOQ57_06745 SM00073 Histidine Phosphotransfer domain BOQ57_06745 SM00260 Two component signalling adaptor domain BOQ57_06745 SM00387 Histidine kinase-like ATPases BOQ57_06745 SM01231 BOQ57_06745 BOQ57_06750 SM00448 cheY-homologous receiver domain BOQ57_06770 SM00260 Two component signalling adaptor domain BOQ57_06775 SM00260 Two component signalling adaptor domain BOQ57_06785 SM00382 ATPases associated with a variety of cellular activities BOQ57_06885 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. BOQ57_06960 SM00422 helix_turn_helix, mercury resistance BOQ57_06970 SM00354 helix_turn _helix lactose operon repressor BOQ57_07005 SM00342 helix_turn_helix, arabinose operon control protein BOQ57_07010 SM01329 BOQ57_07010 BOQ57_07030 SM00507 HNH nucleases BOQ57_07100 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_07100 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_07125 SM01091 Transporter associated domain BOQ57_07185 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_07195 SM00729 Elongator protein 3, MiaB family, Radical SAM BOQ57_07195 SM00876 Biotin and Thiamin Synthesis associated domain BOQ57_07220 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_07235 SM00890 Domain of unknown function BOQ57_07315 SM00458 Ricin-type beta-trefoil BOQ57_07395 SM01081 Putative carbohydrate binding domain BOQ57_07450 SM00347 helix_turn_helix multiple antibiotic resistance protein BOQ57_07475 SM00382 ATPases associated with a variety of cellular activities BOQ57_07550 SM00052 Putative diguanylate phosphodiesterase BOQ57_07550 SM00267 diguanylate cyclase BOQ57_07560 SM00354 helix_turn _helix lactose operon repressor BOQ57_07585 SM00257 Lysin motif BOQ57_07590 SM00849 Metallo-beta-lactamase superfamily BOQ57_07605 SM00479 BOQ57_07605 BOQ57_07615 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BOQ57_07635 SM00073 Histidine Phosphotransfer domain BOQ57_07645 SM00897 FIST N domain BOQ57_07645 SM01204 BOQ57_07645 BOQ57_07650 SM00387 Histidine kinase-like ATPases BOQ57_07650 SM00388 His Kinase A (phosphoacceptor) domain BOQ57_07650 SM00448 cheY-homologous receiver domain BOQ57_07655 SM00464 Found in ATP-dependent protease La (LON) BOQ57_07660 SM00421 helix_turn_helix, Lux Regulon BOQ57_07660 SM00448 cheY-homologous receiver domain BOQ57_07665 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_07665 SM00387 Histidine kinase-like ATPases BOQ57_07670 SM00729 Elongator protein 3, MiaB family, Radical SAM BOQ57_07685 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BOQ57_07710 SM00852 Probable molybdopterin binding domain BOQ57_07740 SM00382 ATPases associated with a variety of cellular activities BOQ57_07755 SM00852 Probable molybdopterin binding domain BOQ57_07765 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_07765 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_07785 SM00867 YceI-like domain BOQ57_07795 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BOQ57_07805 SM00563 Phosphate acyltransferases BOQ57_07840 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_07840 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_07865 SM00855 Phosphoglycerate mutase family BOQ57_07870 SM00507 HNH nucleases BOQ57_07890 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BOQ57_07895 SM00363 S4 RNA-binding domain BOQ57_07925 SM00871 Bacterial transcription activator, effector binding domain BOQ57_07955 SM00345 helix_turn_helix gluconate operon transcriptional repressor BOQ57_08025 SM00420 helix_turn_helix, Deoxyribose operon repressor BOQ57_08025 SM01134 BOQ57_08025 BOQ57_08045 SM00830 Chorismate mutase type II BOQ57_08120 SM00382 ATPases associated with a variety of cellular activities BOQ57_08190 SM00382 ATPases associated with a variety of cellular activities BOQ57_08195 SM00062 Bacterial periplasmic substrate-binding proteins BOQ57_08195 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BOQ57_08220 SM00052 Putative diguanylate phosphodiesterase BOQ57_08220 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BOQ57_08220 SM00091 PAS domain BOQ57_08220 SM00267 diguanylate cyclase BOQ57_08225 SM00450 Rhodanese Homology Domain BOQ57_08230 SM01359 BOQ57_08230 BOQ57_08230 SM01360 BOQ57_08230 BOQ57_08245 SM00981 BOQ57_08245 BOQ57_08370 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_08370 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_08440 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BOQ57_08445 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BOQ57_08455 SM00382 ATPases associated with a variety of cellular activities BOQ57_08495 SM00116 Domain in cystathionine beta-synthase and other proteins. BOQ57_08510 SM01323 BOQ57_08510 BOQ57_08525 SM00450 Rhodanese Homology Domain BOQ57_08530 SM00028 Tetratricopeptide repeats BOQ57_08580 SM00271 DnaJ molecular chaperone homology domain BOQ57_08605 SM00562 BOQ57_08605 BOQ57_08615 SM00028 Tetratricopeptide repeats BOQ57_08620 SM00530 Helix-turn-helix XRE-family like proteins BOQ57_08640 SM00564 beta-propeller repeat BOQ57_08660 SM00062 Bacterial periplasmic substrate-binding proteins BOQ57_08665 SM01211 BOQ57_08665 BOQ57_08705 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BOQ57_08705 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BOQ57_08710 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BOQ57_08780 SM00360 RNA recognition motif BOQ57_08805 SM00091 PAS domain BOQ57_08810 SM00448 cheY-homologous receiver domain BOQ57_08825 SM00052 Putative diguanylate phosphodiesterase BOQ57_08825 SM00267 diguanylate cyclase BOQ57_08875 SM00316 Ribosomal protein S1-like RNA-binding domain BOQ57_08880 SM00411 bacterial (prokaryotic) histone like domain BOQ57_08890 SM00028 Tetratricopeptide repeats BOQ57_08895 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BOQ57_08905 SM01144 BOQ57_08905 BOQ57_08930 SM00528 Domain in histone-like proteins of HNS family BOQ57_08945 SM01154 BOQ57_08945 BOQ57_08990 SM00671 Sel1-like repeats. BOQ57_09040 SM00382 ATPases associated with a variety of cellular activities BOQ57_09040 SM01086 C-terminal, D2-small domain, of ClpB protein BOQ57_09045 SM00382 ATPases associated with a variety of cellular activities BOQ57_09080 SM00047 Lysozyme subfamily 2 BOQ57_09105 SM00357 Cold shock protein domain BOQ57_09115 SM00382 ATPases associated with a variety of cellular activities BOQ57_09115 SM01086 C-terminal, D2-small domain, of ClpB protein BOQ57_09120 SM00316 Ribosomal protein S1-like RNA-binding domain BOQ57_09140 SM00267 diguanylate cyclase BOQ57_09140 SM00448 cheY-homologous receiver domain BOQ57_09155 SM00344 helix_turn_helix ASNC type BOQ57_09160 SM00843 BOQ57_09160 BOQ57_09170 SM00382 ATPases associated with a variety of cellular activities BOQ57_09200 SM00382 ATPases associated with a variety of cellular activities BOQ57_09205 SM00382 ATPases associated with a variety of cellular activities BOQ57_09225 SM00382 ATPases associated with a variety of cellular activities BOQ57_09275 SM00091 PAS domain BOQ57_09275 SM00382 ATPases associated with a variety of cellular activities BOQ57_09285 SM00267 diguanylate cyclase BOQ57_09285 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_09340 SM00479 BOQ57_09340 BOQ57_09350 SM00497 Intron encoded nuclease repeat motif BOQ57_09395 SM00530 Helix-turn-helix XRE-family like proteins BOQ57_09400 SM00530 Helix-turn-helix XRE-family like proteins BOQ57_09555 SM00060 Fibronectin type 3 domain BOQ57_09585 SM01007 Class II Aldolase and Adducin N-terminal domain BOQ57_09600 SM00382 ATPases associated with a variety of cellular activities BOQ57_09610 SM00342 helix_turn_helix, arabinose operon control protein BOQ57_09675 SM00825 Beta-ketoacyl synthase BOQ57_09715 SM00861 Transketolase, pyrimidine binding domain BOQ57_09730 SM00881 CoA binding domain BOQ57_09755 SM00382 ATPases associated with a variety of cellular activities BOQ57_09765 SM00345 helix_turn_helix gluconate operon transcriptional repressor BOQ57_09765 SM00866 BOQ57_09765 BOQ57_09805 SM00859 Semialdehyde dehydrogenase, NAD binding domain BOQ57_09835 SM00822 BOQ57_09835 BOQ57_09840 SM00342 helix_turn_helix, arabinose operon control protein BOQ57_09840 SM00871 Bacterial transcription activator, effector binding domain BOQ57_09870 SM00116 Domain in cystathionine beta-synthase and other proteins. BOQ57_09975 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_09975 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_09975 SM01049 BOQ57_09975 BOQ57_09985 SM00091 PAS domain BOQ57_09985 SM00387 Histidine kinase-like ATPases BOQ57_09990 SM00448 cheY-homologous receiver domain BOQ57_10030 SM00487 DEAD-like helicases superfamily BOQ57_10030 SM00490 helicase superfamily c-terminal domain BOQ57_10055 SM00345 helix_turn_helix gluconate operon transcriptional repressor BOQ57_10070 SM00763 PrkA AAA domain BOQ57_10075 SM00487 DEAD-like helicases superfamily BOQ57_10075 SM00490 helicase superfamily c-terminal domain BOQ57_10135 SM00387 Histidine kinase-like ATPases BOQ57_10135 SM00388 His Kinase A (phosphoacceptor) domain BOQ57_10135 SM00448 cheY-homologous receiver domain BOQ57_10140 SM00382 ATPases associated with a variety of cellular activities BOQ57_10145 SM00382 ATPases associated with a variety of cellular activities BOQ57_10210 SM01118 BOQ57_10210 BOQ57_10235 SM00487 DEAD-like helicases superfamily BOQ57_10235 SM00490 helicase superfamily c-terminal domain BOQ57_10245 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. BOQ57_10260 SM01144 BOQ57_10260 BOQ57_10280 SM00342 helix_turn_helix, arabinose operon control protein BOQ57_10295 SM00642 Alpha-amylase domain BOQ57_10440 SM00782 PhnA Zinc-Ribbon BOQ57_10465 SM00855 Phosphoglycerate mutase family BOQ57_10470 SM00091 PAS domain BOQ57_10470 SM00267 diguanylate cyclase BOQ57_10480 SM00463 Small MutS-related domain BOQ57_10500 SM00487 DEAD-like helicases superfamily BOQ57_10500 SM00490 helicase superfamily c-terminal domain BOQ57_10505 SM00953 BOQ57_10505 BOQ57_10520 SM00354 helix_turn _helix lactose operon repressor BOQ57_10545 SM00354 helix_turn _helix lactose operon repressor BOQ57_10585 SM00925 MltA specific insert domain BOQ57_10615 SM00434 DNA Topoisomerase IV BOQ57_10620 SM00729 Elongator protein 3, MiaB family, Radical SAM BOQ57_10625 SM00671 Sel1-like repeats. BOQ57_10630 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BOQ57_10655 SM00873 B3/4 domain BOQ57_10655 SM00874 tRNA synthetase B5 domain BOQ57_10655 SM00896 Ferredoxin-fold anticodon binding domain BOQ57_10660 SM00411 bacterial (prokaryotic) histone like domain BOQ57_10665 SM00062 Bacterial periplasmic substrate-binding proteins BOQ57_10665 SM00387 Histidine kinase-like ATPases BOQ57_10665 SM00388 His Kinase A (phosphoacceptor) domain BOQ57_10665 SM00448 cheY-homologous receiver domain BOQ57_10690 SM00267 diguanylate cyclase BOQ57_10695 SM00354 helix_turn _helix lactose operon repressor BOQ57_10715 SM00382 ATPases associated with a variety of cellular activities BOQ57_10750 SM00100 Cyclic nucleotide-monophosphate binding domain BOQ57_10750 SM00419 helix_turn_helix, cAMP Regulatory protein BOQ57_10805 SM00945 ProQ/FINO family BOQ57_10810 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BOQ57_10810 SM00245 tail specific protease BOQ57_10840 SM00981 BOQ57_10840 BOQ57_10850 SM00382 ATPases associated with a variety of cellular activities BOQ57_10940 SM00822 BOQ57_10940 BOQ57_11030 SM00382 ATPases associated with a variety of cellular activities BOQ57_11050 SM00825 Beta-ketoacyl synthase BOQ57_11060 SM00822 BOQ57_11060 BOQ57_11065 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BOQ57_11115 SM00363 S4 RNA-binding domain BOQ57_11120 SM00316 Ribosomal protein S1-like RNA-binding domain BOQ57_11160 SM00857 Resolvase, N terminal domain BOQ57_11450 SM00052 Putative diguanylate phosphodiesterase BOQ57_11460 SM00422 helix_turn_helix, mercury resistance BOQ57_11485 SM00422 helix_turn_helix, mercury resistance BOQ57_11525 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_11530 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BOQ57_11550 SM00450 Rhodanese Homology Domain BOQ57_11555 SM00849 Metallo-beta-lactamase superfamily BOQ57_11560 SM00448 cheY-homologous receiver domain BOQ57_11560 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BOQ57_11565 SM00387 Histidine kinase-like ATPases BOQ57_11565 SM00388 His Kinase A (phosphoacceptor) domain BOQ57_11565 SM00448 cheY-homologous receiver domain BOQ57_11580 SM00382 ATPases associated with a variety of cellular activities BOQ57_11580 SM00487 DEAD-like helicases superfamily BOQ57_11580 SM00490 helicase superfamily c-terminal domain BOQ57_11580 SM00847 Helicase associated domain (HA2) Add an annotation BOQ57_11585 SM00116 Domain in cystathionine beta-synthase and other proteins. BOQ57_11590 SM00421 helix_turn_helix, Lux Regulon BOQ57_11605 SM00382 ATPases associated with a variety of cellular activities BOQ57_11630 SM00062 Bacterial periplasmic substrate-binding proteins BOQ57_11635 SM00341 Helicase and RNase D C-terminal BOQ57_11635 SM00474 3'-5' exonuclease BOQ57_11660 SM00491 BOQ57_11660 BOQ57_11700 SM00448 cheY-homologous receiver domain BOQ57_11700 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BOQ57_11705 SM00091 PAS domain BOQ57_11710 SM00073 Histidine Phosphotransfer domain BOQ57_11710 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BOQ57_11710 SM00091 PAS domain BOQ57_11710 SM00387 Histidine kinase-like ATPases BOQ57_11710 SM00388 His Kinase A (phosphoacceptor) domain BOQ57_11710 SM00448 cheY-homologous receiver domain BOQ57_11745 SM00237 Domains in Na-Ca exchangers and integrin-beta4 BOQ57_11755 SM01092 CO dehydrogenase flavoprotein C-terminal domain BOQ57_11760 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BOQ57_11780 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BOQ57_11785 SM01092 CO dehydrogenase flavoprotein C-terminal domain BOQ57_11845 SM00382 ATPases associated with a variety of cellular activities BOQ57_11855 SM01322 BOQ57_11855 BOQ57_11890 SM00327 von Willebrand factor (vWF) type A domain BOQ57_11895 SM00028 Tetratricopeptide repeats BOQ57_11925 SM00052 Putative diguanylate phosphodiesterase BOQ57_11935 SM00422 helix_turn_helix, mercury resistance BOQ57_12020 SM00347 helix_turn_helix multiple antibiotic resistance protein BOQ57_12100 SM00486 DNA polymerase type-B family BOQ57_12110 SM00267 diguanylate cyclase BOQ57_12120 SM00090 RIO-like kinase BOQ57_12150 SM00518 AP endonuclease family 2 BOQ57_12160 SM00822 BOQ57_12160 BOQ57_12165 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BOQ57_12175 SM00052 Putative diguanylate phosphodiesterase BOQ57_12175 SM00267 diguanylate cyclase BOQ57_12190 SM00052 Putative diguanylate phosphodiesterase BOQ57_12225 SM00857 Resolvase, N terminal domain BOQ57_12240 SM00487 DEAD-like helicases superfamily BOQ57_12260 SM00885 D5 N terminal like BOQ57_12290 SM00822 BOQ57_12290 BOQ57_12335 SM00878 Biotin carboxylase C-terminal domain BOQ57_12335 SM01209 BOQ57_12335 BOQ57_12345 SM00422 helix_turn_helix, mercury resistance BOQ57_12350 SM00062 Bacterial periplasmic substrate-binding proteins BOQ57_12385 SM00100 Cyclic nucleotide-monophosphate binding domain BOQ57_12385 SM00116 Domain in cystathionine beta-synthase and other proteins. BOQ57_12390 SM00479 BOQ57_12390 BOQ57_12405 SM00382 ATPases associated with a variety of cellular activities BOQ57_12415 SM00411 bacterial (prokaryotic) histone like domain BOQ57_12420 SM00382 ATPases associated with a variety of cellular activities BOQ57_12420 SM00464 Found in ATP-dependent protease La (LON) BOQ57_12425 SM00382 ATPases associated with a variety of cellular activities BOQ57_12425 SM00994 ClpX C4-type zinc finger BOQ57_12425 SM01086 C-terminal, D2-small domain, of ClpB protein BOQ57_12450 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BOQ57_12460 SM00382 ATPases associated with a variety of cellular activities BOQ57_12475 SM00487 DEAD-like helicases superfamily BOQ57_12475 SM00490 helicase superfamily c-terminal domain BOQ57_12475 SM00982 BOQ57_12475 BOQ57_12475 SM01058 CarD-like/TRCF domain BOQ57_12500 SM00855 Phosphoglycerate mutase family BOQ57_12515 SM00364 Leucine-rich repeats, bacterial type BOQ57_12515 SM00369 Leucine-rich repeats, typical (most populated) subfamily BOQ57_12525 SM00342 helix_turn_helix, arabinose operon control protein BOQ57_12545 SM00116 Domain in cystathionine beta-synthase and other proteins. BOQ57_12545 SM01240 BOQ57_12545 BOQ57_12580 SM00729 Elongator protein 3, MiaB family, Radical SAM BOQ57_12585 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_12585 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_12605 SM00893 Electron transfer flavoprotein domain BOQ57_12610 SM00893 Electron transfer flavoprotein domain BOQ57_12655 SM00382 ATPases associated with a variety of cellular activities BOQ57_12675 SM00823 Phosphopantetheine attachment site BOQ57_12680 SM00822 BOQ57_12680 BOQ57_12685 SM00823 Phosphopantetheine attachment site BOQ57_12720 SM00052 Putative diguanylate phosphodiesterase BOQ57_12720 SM00267 diguanylate cyclase BOQ57_12760 SM00387 Histidine kinase-like ATPases BOQ57_12765 SM00493 BOQ57_12765 BOQ57_12775 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BOQ57_12775 SM00382 ATPases associated with a variety of cellular activities BOQ57_12885 SM00382 ATPases associated with a variety of cellular activities BOQ57_12890 SM00382 ATPases associated with a variety of cellular activities BOQ57_12940 SM00448 cheY-homologous receiver domain BOQ57_12950 SM00073 Histidine Phosphotransfer domain BOQ57_12950 SM00260 Two component signalling adaptor domain BOQ57_12950 SM00387 Histidine kinase-like ATPases BOQ57_12950 SM01231 BOQ57_12950 BOQ57_12955 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_12960 SM00260 Two component signalling adaptor domain BOQ57_12965 SM00138 Methyltransferase, chemotaxis proteins BOQ57_12970 SM00448 cheY-homologous receiver domain BOQ57_12975 SM00052 Putative diguanylate phosphodiesterase BOQ57_12975 SM00448 cheY-homologous receiver domain BOQ57_12980 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_12980 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_12985 SM01005 Alanine racemase, C-terminal domain BOQ57_12990 SM00873 B3/4 domain BOQ57_12995 SM00530 Helix-turn-helix XRE-family like proteins BOQ57_13065 SM00382 ATPases associated with a variety of cellular activities BOQ57_13170 SM01126 BOQ57_13170 BOQ57_13320 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_13320 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_13355 SM01005 Alanine racemase, C-terminal domain BOQ57_13365 SM00382 ATPases associated with a variety of cellular activities BOQ57_13370 SM00382 ATPases associated with a variety of cellular activities BOQ57_13405 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BOQ57_13410 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BOQ57_13415 SM00448 cheY-homologous receiver domain BOQ57_13415 SM00850 LytTr DNA-binding domain BOQ57_13435 SM00487 DEAD-like helicases superfamily BOQ57_13435 SM00490 helicase superfamily c-terminal domain BOQ57_13475 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BOQ57_13475 SM00091 PAS domain BOQ57_13475 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_13510 SM00900 BOQ57_13510 BOQ57_13520 SM00478 endonuclease III BOQ57_13520 SM00525 BOQ57_13520 BOQ57_13535 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_13540 SM00479 BOQ57_13540 BOQ57_13550 SM00487 DEAD-like helicases superfamily BOQ57_13550 SM00490 helicase superfamily c-terminal domain BOQ57_13575 SM00116 Domain in cystathionine beta-synthase and other proteins. BOQ57_13575 SM01091 Transporter associated domain BOQ57_13650 SM00267 diguanylate cyclase BOQ57_13655 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_13735 SM00859 Semialdehyde dehydrogenase, NAD binding domain BOQ57_13745 SM00014 Acid phosphatase homologues BOQ57_13780 SM01217 BOQ57_13780 BOQ57_13785 SM00342 helix_turn_helix, arabinose operon control protein BOQ57_13865 SM00052 Putative diguanylate phosphodiesterase BOQ57_13865 SM00267 diguanylate cyclase BOQ57_13885 SM00382 ATPases associated with a variety of cellular activities BOQ57_13890 SM00729 Elongator protein 3, MiaB family, Radical SAM BOQ57_13910 SM00382 ATPases associated with a variety of cellular activities BOQ57_13920 SM00062 Bacterial periplasmic substrate-binding proteins BOQ57_13935 SM00422 helix_turn_helix, mercury resistance BOQ57_13950 SM01351 BOQ57_13950 BOQ57_13960 SM00487 DEAD-like helicases superfamily BOQ57_13960 SM00490 helicase superfamily c-terminal domain BOQ57_13975 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BOQ57_13995 SM00917 LeuA allosteric (dimerisation) domain BOQ57_14000 SM00851 MGS-like domain BOQ57_14000 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BOQ57_14005 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BOQ57_14050 SM00382 ATPases associated with a variety of cellular activities BOQ57_14060 SM00062 Bacterial periplasmic substrate-binding proteins BOQ57_14070 SM00382 ATPases associated with a variety of cellular activities BOQ57_14095 SM00899 BOQ57_14095 BOQ57_14125 SM00062 Bacterial periplasmic substrate-binding proteins BOQ57_14130 SM00062 Bacterial periplasmic substrate-binding proteins BOQ57_14135 SM00267 diguanylate cyclase BOQ57_14155 SM00840 BOQ57_14155 BOQ57_14210 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_14215 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BOQ57_14215 SM00091 PAS domain BOQ57_14215 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_14240 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BOQ57_14240 SM00465 GIY-YIG type nucleases (URI domain) BOQ57_14245 SM00421 helix_turn_helix, Lux Regulon BOQ57_14245 SM00448 cheY-homologous receiver domain BOQ57_14265 SM00382 ATPases associated with a variety of cellular activities BOQ57_14270 SM00849 Metallo-beta-lactamase superfamily BOQ57_14305 SM00491 BOQ57_14305 BOQ57_14330 SM00098 Alkaline phosphatase homologues BOQ57_14335 SM00098 Alkaline phosphatase homologues BOQ57_14355 SM00421 helix_turn_helix, Lux Regulon BOQ57_14355 SM00448 cheY-homologous receiver domain BOQ57_14360 SM00387 Histidine kinase-like ATPases BOQ57_14370 SM00267 diguanylate cyclase BOQ57_14375 SM00062 Bacterial periplasmic substrate-binding proteins BOQ57_14375 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BOQ57_14385 SM00382 ATPases associated with a variety of cellular activities BOQ57_14415 SM01091 Transporter associated domain BOQ57_14425 SM00382 ATPases associated with a variety of cellular activities BOQ57_14490 SM00382 ATPases associated with a variety of cellular activities BOQ57_14490 SM00448 cheY-homologous receiver domain BOQ57_14495 SM00091 PAS domain BOQ57_14495 SM00387 Histidine kinase-like ATPases BOQ57_14495 SM00388 His Kinase A (phosphoacceptor) domain BOQ57_14500 SM00382 ATPases associated with a variety of cellular activities BOQ57_14525 SM00116 Domain in cystathionine beta-synthase and other proteins. BOQ57_14525 SM00924 MgtE intracellular N domain BOQ57_14540 SM00047 Lysozyme subfamily 2 BOQ57_14585 SM00138 Methyltransferase, chemotaxis proteins BOQ57_14590 SM00260 Two component signalling adaptor domain BOQ57_14590 SM00448 cheY-homologous receiver domain BOQ57_14595 SM00858 BOQ57_14595 BOQ57_14625 SM00363 S4 RNA-binding domain BOQ57_14630 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BOQ57_14655 SM00420 helix_turn_helix, Deoxyribose operon repressor BOQ57_14655 SM01134 BOQ57_14655 BOQ57_14690 SM00357 Cold shock protein domain BOQ57_14700 SM00861 Transketolase, pyrimidine binding domain BOQ57_14725 SM00487 DEAD-like helicases superfamily BOQ57_14725 SM00490 helicase superfamily c-terminal domain BOQ57_14740 SM01126 BOQ57_14740 BOQ57_14920 SM00984 UDP binding domain BOQ57_14970 SM00363 S4 RNA-binding domain BOQ57_14990 SM00481 DNA polymerase alpha chain like domain BOQ57_15035 SM00247 Beta/gamma crystallins BOQ57_15055 SM00062 Bacterial periplasmic substrate-binding proteins BOQ57_15060 SM00382 ATPases associated with a variety of cellular activities BOQ57_15155 SM00028 Tetratricopeptide repeats BOQ57_15155 SM00448 cheY-homologous receiver domain BOQ57_15215 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BOQ57_15215 SM00091 PAS domain BOQ57_15215 SM00267 diguanylate cyclase BOQ57_15240 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BOQ57_15260 SM00354 helix_turn _helix lactose operon repressor BOQ57_15265 SM00640 Glycosyl hydrolases family 32 BOQ57_15285 SM00271 DnaJ molecular chaperone homology domain BOQ57_15310 SM01131 BOQ57_15310 BOQ57_15325 SM00382 ATPases associated with a variety of cellular activities BOQ57_15350 SM00528 Domain in histone-like proteins of HNS family BOQ57_15370 SM00530 Helix-turn-helix XRE-family like proteins BOQ57_15420 SM00062 Bacterial periplasmic substrate-binding proteins BOQ57_15420 SM00387 Histidine kinase-like ATPases BOQ57_15420 SM00388 His Kinase A (phosphoacceptor) domain BOQ57_15420 SM00448 cheY-homologous receiver domain BOQ57_15420 SM00918 Ligated ion channel L-glutamate- and glycine-binding site BOQ57_15450 SM00382 ATPases associated with a variety of cellular activities BOQ57_15510 SM00448 cheY-homologous receiver domain BOQ57_15510 SM00862 Transcriptional regulatory protein, C terminal BOQ57_15525 SM00382 ATPases associated with a variety of cellular activities BOQ57_15530 SM00382 ATPases associated with a variety of cellular activities BOQ57_15565 SM00382 ATPases associated with a variety of cellular activities BOQ57_15590 SM00267 diguanylate cyclase BOQ57_15680 SM00919 Malic enzyme, NAD binding domain BOQ57_15680 SM01274 BOQ57_15680 BOQ57_15685 SM00387 Histidine kinase-like ATPases BOQ57_15685 SM00448 cheY-homologous receiver domain BOQ57_15700 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BOQ57_15750 SM00387 Histidine kinase-like ATPases BOQ57_15750 SM00388 His Kinase A (phosphoacceptor) domain BOQ57_15755 SM00382 ATPases associated with a variety of cellular activities BOQ57_15755 SM00448 cheY-homologous receiver domain BOQ57_15770 SM00382 ATPases associated with a variety of cellular activities BOQ57_15780 SM00852 Probable molybdopterin binding domain BOQ57_15795 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BOQ57_15795 SM00091 PAS domain BOQ57_15795 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_15845 SM00091 PAS domain BOQ57_15845 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_15845 SM00387 Histidine kinase-like ATPases BOQ57_15845 SM00388 His Kinase A (phosphoacceptor) domain BOQ57_15845 SM00448 cheY-homologous receiver domain BOQ57_15865 SM00382 ATPases associated with a variety of cellular activities BOQ57_15870 SM00382 ATPases associated with a variety of cellular activities BOQ57_15890 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_15900 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BOQ57_15900 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BOQ57_15900 SM00493 BOQ57_15900 BOQ57_15945 SM00788 Adenylosuccinate synthetase BOQ57_15955 SM00342 helix_turn_helix, arabinose operon control protein BOQ57_15965 SM00363 S4 RNA-binding domain BOQ57_15995 SM00861 Transketolase, pyrimidine binding domain BOQ57_16005 SM00731 SprT homologues. BOQ57_16025 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_16035 SM00732 Likely ribonuclease with RNase H fold. BOQ57_16075 SM00460 Transglutaminase/protease-like homologues BOQ57_16100 SM00986 Uracil DNA glycosylase superfamily BOQ57_16100 SM00987 UreE urease accessory protein, C-terminal domain BOQ57_16135 SM00937 BOQ57_16135 BOQ57_16160 SM01400 BOQ57_16160 BOQ57_16235 SM00100 Cyclic nucleotide-monophosphate binding domain BOQ57_16240 SM01022 BOQ57_16240 BOQ57_16250 SM00642 Alpha-amylase domain BOQ57_16265 SM00382 ATPases associated with a variety of cellular activities BOQ57_16275 SM00890 Domain of unknown function BOQ57_16290 SM01150 BOQ57_16290 BOQ57_16355 SM00965 Secretin and TonB N terminus short domain BOQ57_16375 SM00842 Cell division protein FtsA BOQ57_16390 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_16390 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_16400 SM00849 Metallo-beta-lactamase superfamily BOQ57_16440 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_16440 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_16500 SM01236 BOQ57_16500 BOQ57_16505 SM00822 BOQ57_16505 BOQ57_16515 SM00448 cheY-homologous receiver domain BOQ57_16515 SM00862 Transcriptional regulatory protein, C terminal BOQ57_16520 SM00387 Histidine kinase-like ATPases BOQ57_16520 SM00388 His Kinase A (phosphoacceptor) domain BOQ57_16530 SM01240 BOQ57_16530 BOQ57_16540 SM00841 Elongation factor P, C-terminal BOQ57_16540 SM01185 BOQ57_16540 BOQ57_16565 SM00267 diguanylate cyclase BOQ57_16590 SM00267 diguanylate cyclase BOQ57_16595 SM00357 Cold shock protein domain BOQ57_16610 SM00729 Elongator protein 3, MiaB family, Radical SAM BOQ57_16625 SM00116 Domain in cystathionine beta-synthase and other proteins. BOQ57_16625 SM01091 Transporter associated domain BOQ57_16695 SM00936 Penicillin-binding protein 5, C-terminal domain BOQ57_16710 SM00729 Elongator protein 3, MiaB family, Radical SAM BOQ57_16740 SM00422 helix_turn_helix, mercury resistance BOQ57_16760 SM00267 diguanylate cyclase BOQ57_16820 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BOQ57_16835 SM00387 Histidine kinase-like ATPases BOQ57_16835 SM00388 His Kinase A (phosphoacceptor) domain BOQ57_16840 SM00421 helix_turn_helix, Lux Regulon BOQ57_16840 SM00448 cheY-homologous receiver domain BOQ57_16845 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BOQ57_16850 SM00448 cheY-homologous receiver domain BOQ57_16850 SM00850 LytTr DNA-binding domain BOQ57_16880 SM00267 diguanylate cyclase BOQ57_16890 SM00316 Ribosomal protein S1-like RNA-binding domain BOQ57_16890 SM00322 K homology RNA-binding domain BOQ57_16895 SM01387 BOQ57_16895 BOQ57_16915 SM00316 Ribosomal protein S1-like RNA-binding domain BOQ57_16955 SM00382 ATPases associated with a variety of cellular activities BOQ57_16965 SM01103 BOQ57_16965 BOQ57_17000 SM00861 Transketolase, pyrimidine binding domain BOQ57_17020 SM00382 ATPases associated with a variety of cellular activities BOQ57_17045 SM00020 Trypsin-like serine protease BOQ57_17110 SM00052 Putative diguanylate phosphodiesterase BOQ57_17110 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BOQ57_17110 SM00091 PAS domain BOQ57_17110 SM00267 diguanylate cyclase BOQ57_17135 SM00878 Biotin carboxylase C-terminal domain BOQ57_17160 SM00829 Enoylreductase BOQ57_17175 SM01266 BOQ57_17175 BOQ57_17180 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_17215 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BOQ57_17225 SM00870 BOQ57_17225 BOQ57_17235 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_17235 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_17240 SM00937 BOQ57_17240 BOQ57_17280 SM00382 ATPases associated with a variety of cellular activities BOQ57_17305 SM00852 Probable molybdopterin binding domain BOQ57_17315 SM00825 Beta-ketoacyl synthase BOQ57_17320 SM00822 BOQ57_17320 BOQ57_17330 SM00825 Beta-ketoacyl synthase BOQ57_17390 SM00563 Phosphate acyltransferases BOQ57_17415 SM00477 DNA/RNA non-specific endonuclease BOQ57_17415 SM00892 DNA/RNA non-specific endonuclease BOQ57_17425 SM01057 Eukaryotic-type carbonic anhydrase BOQ57_17450 SM00382 ATPases associated with a variety of cellular activities BOQ57_17465 SM01012 BOQ57_17465 BOQ57_17475 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BOQ57_17505 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BOQ57_17530 SM00382 ATPases associated with a variety of cellular activities BOQ57_17535 SM00382 ATPases associated with a variety of cellular activities BOQ57_17585 SM00028 Tetratricopeptide repeats BOQ57_17590 SM00495 Chitin-binding domain type 3 BOQ57_17590 SM00636 BOQ57_17590 BOQ57_17630 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_17630 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_17640 SM00357 Cold shock protein domain BOQ57_17680 SM00479 BOQ57_17680 BOQ57_17720 SM00342 helix_turn_helix, arabinose operon control protein BOQ57_17730 SM00052 Putative diguanylate phosphodiesterase BOQ57_17730 SM00091 PAS domain BOQ57_17730 SM00267 diguanylate cyclase BOQ57_17755 SM00267 diguanylate cyclase BOQ57_17850 SM00382 ATPases associated with a variety of cellular activities BOQ57_17860 SM00450 Rhodanese Homology Domain BOQ57_17890 SM00052 Putative diguanylate phosphodiesterase BOQ57_17905 SM00382 ATPases associated with a variety of cellular activities BOQ57_17915 SM00260 Two component signalling adaptor domain BOQ57_17915 SM00448 cheY-homologous receiver domain BOQ57_18130 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BOQ57_18145 SM00448 cheY-homologous receiver domain BOQ57_18155 SM00382 ATPases associated with a variety of cellular activities BOQ57_18210 SM00487 DEAD-like helicases superfamily BOQ57_18315 SM00530 Helix-turn-helix XRE-family like proteins BOQ57_18335 SM00528 Domain in histone-like proteins of HNS family BOQ57_18400 SM00014 Acid phosphatase homologues BOQ57_18410 SM00448 cheY-homologous receiver domain BOQ57_18410 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BOQ57_18440 SM00487 DEAD-like helicases superfamily BOQ57_18440 SM00490 helicase superfamily c-terminal domain BOQ57_18440 SM00847 Helicase associated domain (HA2) Add an annotation BOQ57_18485 SM00450 Rhodanese Homology Domain BOQ57_18515 SM00382 ATPases associated with a variety of cellular activities BOQ57_18570 SM00382 ATPases associated with a variety of cellular activities BOQ57_18590 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_18610 SM00507 HNH nucleases BOQ57_18640 SM00244 prohibitin homologues BOQ57_18650 SM00116 Domain in cystathionine beta-synthase and other proteins. BOQ57_18655 SM00382 ATPases associated with a variety of cellular activities BOQ57_18755 SM00345 helix_turn_helix gluconate operon transcriptional repressor BOQ57_18820 SM00344 helix_turn_helix ASNC type BOQ57_18835 SM00347 helix_turn_helix multiple antibiotic resistance protein BOQ57_18845 SM00829 Enoylreductase BOQ57_18865 SM00642 Alpha-amylase domain BOQ57_18870 SM00642 Alpha-amylase domain BOQ57_18880 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BOQ57_18895 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_18895 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_19025 SM00382 ATPases associated with a variety of cellular activities BOQ57_19030 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BOQ57_19035 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_19035 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_19095 SM01152 BOQ57_19095 BOQ57_19115 SM00382 ATPases associated with a variety of cellular activities BOQ57_19130 SM00487 DEAD-like helicases superfamily BOQ57_19130 SM00490 helicase superfamily c-terminal domain BOQ57_19175 SM00411 bacterial (prokaryotic) histone like domain BOQ57_19190 SM00382 ATPases associated with a variety of cellular activities BOQ57_19215 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BOQ57_19215 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BOQ57_19215 SM00091 PAS domain BOQ57_19215 SM00267 diguanylate cyclase BOQ57_19230 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BOQ57_19235 SM01133 BOQ57_19235 BOQ57_19350 SM01091 Transporter associated domain BOQ57_19365 SM01126 BOQ57_19365 BOQ57_19410 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BOQ57_19420 SM00382 ATPases associated with a variety of cellular activities BOQ57_19430 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BOQ57_19430 SM00534 ATPase domain of DNA mismatch repair MUTS family BOQ57_19445 SM00347 helix_turn_helix multiple antibiotic resistance protein BOQ57_19485 SM00382 ATPases associated with a variety of cellular activities BOQ57_19505 SM00986 Uracil DNA glycosylase superfamily BOQ57_19505 SM00987 UreE urease accessory protein, C-terminal domain BOQ57_19540 SM00563 Phosphate acyltransferases BOQ57_19570 SM00271 DnaJ molecular chaperone homology domain BOQ57_19615 SM00434 DNA Topoisomerase IV BOQ57_19620 SM00387 Histidine kinase-like ATPases BOQ57_19620 SM00433 TopoisomeraseII BOQ57_19690 SM01118 BOQ57_19690 BOQ57_19720 SM00450 Rhodanese Homology Domain BOQ57_19730 SM00345 helix_turn_helix gluconate operon transcriptional repressor BOQ57_19760 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BOQ57_19765 SM00382 ATPases associated with a variety of cellular activities BOQ57_19775 SM00478 endonuclease III BOQ57_19775 SM00525 BOQ57_19775 BOQ57_19800 SM00062 Bacterial periplasmic substrate-binding proteins BOQ57_19840 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BOQ57_19840 SM00267 diguanylate cyclase BOQ57_19845 SM01130 BOQ57_19845 BOQ57_19915 SM00382 ATPases associated with a variety of cellular activities BOQ57_19945 SM00344 helix_turn_helix ASNC type BOQ57_19950 SM01266 BOQ57_19950 BOQ57_19955 SM00642 Alpha-amylase domain BOQ57_19965 SM00354 helix_turn _helix lactose operon repressor BOQ57_19980 SM00870 BOQ57_19980 BOQ57_19995 SM00851 MGS-like domain BOQ57_20030 SM00260 Two component signalling adaptor domain BOQ57_20030 SM00448 cheY-homologous receiver domain BOQ57_20075 SM01207 BOQ57_20075 BOQ57_20080 SM00905 Dihydroneopterin aldolase BOQ57_20100 SM00833 Cobalamin synthesis protein cobW C-terminal domain BOQ57_20120 SM00052 Putative diguanylate phosphodiesterase BOQ57_20135 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_20135 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_20140 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_20165 SM00345 helix_turn_helix gluconate operon transcriptional repressor BOQ57_20165 SM00895 BOQ57_20165 BOQ57_20170 SM00644 BOQ57_20170 BOQ57_20235 SM00957 SecA DEAD-like domain BOQ57_20235 SM00958 SecA preprotein cross-linking domain BOQ57_20250 SM00864 Tubulin/FtsZ family, GTPase domain BOQ57_20250 SM00865 Tubulin/FtsZ family, C-terminal domain BOQ57_20255 SM00842 Cell division protein FtsA BOQ57_20345 SM00749 bacterial OsmY and nodulation domain BOQ57_20395 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BOQ57_20400 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BOQ57_20475 SM00382 ATPases associated with a variety of cellular activities BOQ57_20495 SM00116 Domain in cystathionine beta-synthase and other proteins. BOQ57_20500 SM00382 ATPases associated with a variety of cellular activities BOQ57_20580 SM00530 Helix-turn-helix XRE-family like proteins BOQ57_20610 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_20610 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_20620 SM00267 diguanylate cyclase BOQ57_20630 SM00421 helix_turn_helix, Lux Regulon BOQ57_20640 SM00062 Bacterial periplasmic substrate-binding proteins BOQ57_20655 SM00357 Cold shock protein domain BOQ57_20670 SM00062 Bacterial periplasmic substrate-binding proteins BOQ57_20670 SM00267 diguanylate cyclase BOQ57_20675 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_20675 SM00387 Histidine kinase-like ATPases BOQ57_20675 SM00388 His Kinase A (phosphoacceptor) domain BOQ57_20680 SM00448 cheY-homologous receiver domain BOQ57_20680 SM00862 Transcriptional regulatory protein, C terminal BOQ57_20705 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BOQ57_20705 SM00091 PAS domain BOQ57_20705 SM00267 diguanylate cyclase BOQ57_20710 SM00342 helix_turn_helix, arabinose operon control protein BOQ57_20760 SM00530 Helix-turn-helix XRE-family like proteins BOQ57_20765 SM00345 helix_turn_helix gluconate operon transcriptional repressor BOQ57_20765 SM00866 BOQ57_20765 BOQ57_20790 SM00382 ATPases associated with a variety of cellular activities BOQ57_20800 SM00267 diguanylate cyclase BOQ57_20815 SM00342 helix_turn_helix, arabinose operon control protein BOQ57_20815 SM00871 Bacterial transcription activator, effector binding domain BOQ57_20825 SM01060 BOQ57_20825 BOQ57_20850 SM00014 Acid phosphatase homologues BOQ57_20880 SM00091 PAS domain BOQ57_20895 SM01120 BOQ57_20895 BOQ57_20950 SM00838 Elongation factor G C-terminus BOQ57_20950 SM00889 Elongation factor G, domain IV BOQ57_20990 SM00663 RNA polymerase I subunit A N-terminus BOQ57_21015 SM00649 Ribosomal protein L11/L12 BOQ57_21020 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BOQ57_21020 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BOQ57_21075 SM00342 helix_turn_helix, arabinose operon control protein BOQ57_21090 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BOQ57_21090 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BOQ57_21090 SM00493 BOQ57_21090 BOQ57_21110 SM00387 Histidine kinase-like ATPases BOQ57_21115 SM00448 cheY-homologous receiver domain BOQ57_21115 SM00862 Transcriptional regulatory protein, C terminal BOQ57_21145 SM00382 ATPases associated with a variety of cellular activities BOQ57_21145 SM00448 cheY-homologous receiver domain BOQ57_21155 SM00387 Histidine kinase-like ATPases BOQ57_21155 SM00388 His Kinase A (phosphoacceptor) domain BOQ57_21170 SM00116 Domain in cystathionine beta-synthase and other proteins. BOQ57_21180 SM00062 Bacterial periplasmic substrate-binding proteins BOQ57_21185 SM00344 helix_turn_helix ASNC type BOQ57_21195 SM00849 Metallo-beta-lactamase superfamily BOQ57_21200 SM00382 ATPases associated with a variety of cellular activities BOQ57_21200 SM01086 C-terminal, D2-small domain, of ClpB protein BOQ57_21210 SM00363 S4 RNA-binding domain BOQ57_21245 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BOQ57_21245 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BOQ57_21255 SM00342 helix_turn_helix, arabinose operon control protein BOQ57_21265 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_21265 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_21330 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_21330 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_21340 SM00382 ATPases associated with a variety of cellular activities BOQ57_21350 SM01038 Beta galactosidase small chain BOQ57_21355 SM00354 helix_turn _helix lactose operon repressor BOQ57_21400 SM00464 Found in ATP-dependent protease La (LON) BOQ57_21405 SM00836 DALR anticodon binding domain BOQ57_21405 SM01016 Arginyl tRNA synthetase N terminal dom BOQ57_21420 SM00382 ATPases associated with a variety of cellular activities BOQ57_21420 SM01086 C-terminal, D2-small domain, of ClpB protein BOQ57_21445 SM00382 ATPases associated with a variety of cellular activities BOQ57_21480 SM00924 MgtE intracellular N domain BOQ57_21485 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BOQ57_21485 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_21485 SM01358 BOQ57_21485 BOQ57_21515 SM00341 Helicase and RNase D C-terminal BOQ57_21515 SM00487 DEAD-like helicases superfamily BOQ57_21515 SM00490 helicase superfamily c-terminal domain BOQ57_21515 SM00956 BOQ57_21515 BOQ57_21555 SM00382 ATPases associated with a variety of cellular activities BOQ57_21575 SM01230 BOQ57_21575 BOQ57_21620 SM00642 Alpha-amylase domain BOQ57_21640 SM00448 cheY-homologous receiver domain BOQ57_21640 SM00862 Transcriptional regulatory protein, C terminal BOQ57_21645 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_21645 SM00387 Histidine kinase-like ATPases BOQ57_21645 SM00388 His Kinase A (phosphoacceptor) domain BOQ57_21655 SM00919 Malic enzyme, NAD binding domain BOQ57_21655 SM01274 BOQ57_21655 BOQ57_21670 SM00487 DEAD-like helicases superfamily BOQ57_21670 SM00490 helicase superfamily c-terminal domain BOQ57_21710 SM00382 ATPases associated with a variety of cellular activities BOQ57_21715 SM00563 Phosphate acyltransferases BOQ57_21720 SM00563 Phosphate acyltransferases BOQ57_21765 SM00267 diguanylate cyclase BOQ57_21770 SM00422 helix_turn_helix, mercury resistance BOQ57_21840 SM00829 Enoylreductase BOQ57_21850 SM00052 Putative diguanylate phosphodiesterase BOQ57_21850 SM00267 diguanylate cyclase BOQ57_21900 SM00360 RNA recognition motif BOQ57_21930 SM01001 AIR carboxylase BOQ57_21945 SM00448 cheY-homologous receiver domain BOQ57_21945 SM00850 LytTr DNA-binding domain BOQ57_21950 SM00387 Histidine kinase-like ATPases BOQ57_21960 SM00062 Bacterial periplasmic substrate-binding proteins BOQ57_21960 SM00387 Histidine kinase-like ATPases BOQ57_21960 SM00388 His Kinase A (phosphoacceptor) domain BOQ57_21960 SM00448 cheY-homologous receiver domain BOQ57_21965 SM00421 helix_turn_helix, Lux Regulon BOQ57_21965 SM00448 cheY-homologous receiver domain BOQ57_22015 SM00267 diguanylate cyclase BOQ57_22055 SM00267 diguanylate cyclase BOQ57_22075 SM00072 Guanylate kinase homologues. BOQ57_22080 SM01409 BOQ57_22080 BOQ57_22085 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BOQ57_22085 SM00954 Region found in RelA / SpoT proteins BOQ57_22110 SM00448 cheY-homologous receiver domain BOQ57_22115 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_22115 SM00387 Histidine kinase-like ATPases BOQ57_22115 SM00388 His Kinase A (phosphoacceptor) domain BOQ57_22135 SM00458 Ricin-type beta-trefoil BOQ57_22175 SM00091 PAS domain BOQ57_22175 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BOQ57_22175 SM00387 Histidine kinase-like ATPases BOQ57_22205 SM00387 Histidine kinase-like ATPases BOQ57_22205 SM00388 His Kinase A (phosphoacceptor) domain BOQ57_22210 SM00448 cheY-homologous receiver domain BOQ57_22210 SM00862 Transcriptional regulatory protein, C terminal BOQ57_22220 SM00342 helix_turn_helix, arabinose operon control protein BOQ57_22255 SM00387 Histidine kinase-like ATPases BOQ57_22255 SM00433 TopoisomeraseII BOQ57_22265 SM00480 DNA polymerase III beta subunit