locus-tag class description VI35_00005 PF00308 Bacterial dnaA protein VI35_00005 PF11638 DnaA N-terminal domain VI35_00005 PF08299 Bacterial dnaA protein helix-turn-helix VI35_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain VI35_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain VI35_00010 PF02767 DNA polymerase III beta subunit, central domain VI35_00015 PF02463 RecF/RecN/SMC N terminal domain VI35_00020 PF00986 DNA gyrase B subunit, carboxyl terminus VI35_00020 PF18053 DNA gyrase B subunit insert domain VI35_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VI35_00020 PF01751 Toprim domain VI35_00020 PF00204 DNA gyrase B VI35_00025 PF02311 AraC-like ligand binding domain VI35_00025 PF12833 Helix-turn-helix domain VI35_00030 PF12706 Beta-lactamase superfamily domain VI35_00035 PF00011 Hsp20/alpha crystallin family VI35_00040 PF00011 Hsp20/alpha crystallin family VI35_00045 PF00155 Aminotransferase class I and II VI35_00060 PF07690 Major Facilitator Superfamily VI35_00065 PF00486 Transcriptional regulatory protein, C terminal VI35_00065 PF00072 Response regulator receiver domain VI35_00075 PF02669 K+-transporting ATPase, c chain VI35_00085 PF03814 Potassium-transporting ATPase A subunit VI35_00095 PF07992 Pyridine nucleotide-disulphide oxidoreductase VI35_00095 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VI35_00110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VI35_00115 PF00440 Bacterial regulatory proteins, tetR family VI35_00150 PF12146 Serine aminopeptidase, S33 VI35_00155 PF00588 SpoU rRNA Methylase family VI35_00155 PF12105 SpoU, rRNA methylase, C-terminal VI35_00160 PF02824 TGS domain VI35_00160 PF04607 Region found in RelA / SpoT proteins VI35_00160 PF13291 ACT domain VI35_00165 PF01192 RNA polymerase Rpb6 VI35_00215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_00215 PF03466 LysR substrate binding domain VI35_00220 PF00579 tRNA synthetases class I (W and Y) VI35_00225 PF00582 Universal stress protein family VI35_00235 PF07055 Enoyl reductase FAD binding domain VI35_00235 PF12241 Trans-2-enoyl-CoA reductase catalytic region VI35_00235 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VI35_00240 PF05230 MASE2 domain VI35_00240 PF00990 Diguanylate cyclase, GGDEF domain VI35_00245 PF00210 Ferritin-like domain VI35_00255 PF07690 Major Facilitator Superfamily VI35_00260 PF01810 LysE type translocator VI35_00275 PF16967 E-set like domain VI35_00275 PF15976 CS1-pili formation C-terminal VI35_00280 PF18649 EcpB C-terminal domain VI35_00285 PF16449 Fimbrillin MatB VI35_00290 PF00196 Bacterial regulatory proteins, luxR family VI35_00290 PF00072 Response regulator receiver domain VI35_00295 PF00989 PAS fold VI35_00295 PF00497 Bacterial extracellular solute-binding proteins, family 3 VI35_00295 PF01627 Hpt domain VI35_00295 PF00512 His Kinase A (phospho-acceptor) domain VI35_00295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VI35_00295 PF00072 Response regulator receiver domain VI35_00305 PF06580 Histidine kinase VI35_00305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VI35_00305 PF07694 5TMR of 5TMR-LYT VI35_00310 PF00072 Response regulator receiver domain VI35_00310 PF04397 LytTr DNA-binding domain VI35_00315 PF07690 Major Facilitator Superfamily VI35_00320 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VI35_00320 PF02222 ATP-grasp domain VI35_00325 PF00731 AIR carboxylase VI35_00330 PF07715 TonB-dependent Receptor Plug Domain VI35_00330 PF00593 TonB dependent receptor VI35_00335 PF01177 Asp/Glu/Hydantoin racemase VI35_00365 PF13607 Succinyl-CoA ligase like flavodoxin domain VI35_00365 PF13380 CoA binding domain VI35_00365 PF00583 Acetyltransferase (GNAT) family VI35_00375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_00375 PF03466 LysR substrate binding domain VI35_00380 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VI35_00380 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain VI35_00385 PF00342 Phosphoglucose isomerase VI35_00395 PF05552 Conserved TM helix VI35_00395 PF00924 Mechanosensitive ion channel VI35_00400 PF00440 Bacterial regulatory proteins, tetR family VI35_00405 PF00692 dUTPase VI35_00410 PF02441 Flavoprotein VI35_00410 PF04127 DNA / pantothenate metabolism flavoprotein VI35_00415 PF04002 RadC-like JAB domain VI35_00420 PF00830 Ribosomal L28 family VI35_00425 PF00471 Ribosomal protein L33 VI35_00435 PF06827 Zinc finger found in FPG and IleRS VI35_00435 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VI35_00435 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VI35_00440 PF04393 Protein of unknown function (DUF535) VI35_00445 PF01467 Cytidylyltransferase-like VI35_00450 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VI35_00455 PF00535 Glycosyl transferase family 2 VI35_00460 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VI35_00465 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VI35_00475 PF04320 Protein with unknown function (DUF469) VI35_00480 PF01420 Type I restriction modification DNA specificity domain VI35_00485 PF02384 N-6 DNA Methylase VI35_00490 PF02661 Fic/DOC family VI35_00490 PF13784 Fic/DOC family N-terminal VI35_00500 PF14338 Mrr N-terminal domain VI35_00500 PF04471 Restriction endonuclease VI35_00505 PF03755 YicC-like family, N-terminal region VI35_00505 PF08340 Domain of unknown function (DUF1732) VI35_00510 PF03725 3' exoribonuclease family, domain 2 VI35_00510 PF01138 3' exoribonuclease family, domain 1 VI35_00515 PF00156 Phosphoribosyl transferase domain VI35_00525 PF09278 MerR, DNA binding VI35_00525 PF00376 MerR family regulatory protein VI35_00530 PF00360 Phytochrome region VI35_00530 PF01590 GAF domain VI35_00530 PF00563 EAL domain VI35_00530 PF00990 Diguanylate cyclase, GGDEF domain VI35_00535 PF06288 Protein of unknown function (DUF1040) VI35_00540 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VI35_00540 PF12801 4Fe-4S binding domain VI35_00540 PF13746 4Fe-4S dicluster domain VI35_00545 PF01636 Phosphotransferase enzyme family VI35_00550 PF01323 DSBA-like thioredoxin domain VI35_00555 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family VI35_00555 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain VI35_00560 PF00857 Isochorismatase family VI35_00570 PF04463 Protein of unknown function (DUF523) VI35_00575 PF01553 Acyltransferase VI35_00580 PF01553 Acyltransferase VI35_00590 PF00205 Thiamine pyrophosphate enzyme, central domain VI35_00590 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VI35_00590 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VI35_00600 PF01063 Amino-transferase class IV VI35_00605 PF00920 Dehydratase family VI35_00615 PF00691 OmpA family VI35_00615 PF01389 OmpA-like transmembrane domain VI35_00625 PF00440 Bacterial regulatory proteins, tetR family VI35_00635 PF01197 Ribosomal protein L31 VI35_00645 PF00390 Malic enzyme, N-terminal domain VI35_00645 PF03949 Malic enzyme, NAD binding domain VI35_00665 PF05958 tRNA (Uracil-5-)-methyltransferase VI35_00700 PF09940 Domain of unknown function (DUF2172) VI35_00700 PF16221 winged helix-turn-helix VI35_00700 PF16254 Domain of unknown function (DUF4910) VI35_00710 PF02903 Alpha amylase, N-terminal ig-like domain VI35_00710 PF00128 Alpha amylase, catalytic domain VI35_00730 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VI35_00730 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VI35_00735 PF05981 CreA protein VI35_00750 PF01258 Prokaryotic dksA/traR C4-type zinc finger VI35_00755 PF00120 Glutamine synthetase, catalytic domain VI35_00765 PF13416 Bacterial extracellular solute-binding protein VI35_00770 PF13416 Bacterial extracellular solute-binding protein VI35_00775 PF00005 ABC transporter VI35_00775 PF08402 TOBE domain VI35_00780 PF00528 Binding-protein-dependent transport system inner membrane component VI35_00785 PF00528 Binding-protein-dependent transport system inner membrane component VI35_00790 PF03473 MOSC domain VI35_00790 PF03475 3-alpha domain VI35_00805 PF03061 Thioesterase superfamily VI35_00810 PF09382 RQC domain VI35_00810 PF16124 RecQ zinc-binding VI35_00810 PF00570 HRDC domain VI35_00810 PF00271 Helicase conserved C-terminal domain VI35_00810 PF00270 DEAD/DEAH box helicase VI35_00815 PF00034 Cytochrome c VI35_00820 PF02696 Uncharacterized ACR, YdiU/UPF0061 family VI35_00830 PF02592 Putative vitamin uptake transporter VI35_00835 PF03737 Aldolase/RraA VI35_00845 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VI35_00845 PF14824 Sirohaem biosynthesis protein central VI35_00845 PF10414 Sirohaem synthase dimerisation region VI35_00850 PF01226 Formate/nitrite transporter VI35_00855 PF13806 Rieske-like [2Fe-2S] domain VI35_00860 PF18267 Rubredoxin NAD+ reductase C-terminal domain VI35_00860 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VI35_00860 PF07992 Pyridine nucleotide-disulphide oxidoreductase VI35_00860 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VI35_00860 PF04324 BFD-like [2Fe-2S] binding domain VI35_00880 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VI35_00895 PF07690 Major Facilitator Superfamily VI35_00900 PF00004 ATPase family associated with various cellular activities (AAA) VI35_00900 PF07724 AAA domain (Cdc48 subfamily) VI35_00900 PF10431 C-terminal, D2-small domain, of ClpB protein VI35_00905 PF00227 Proteasome subunit VI35_00920 PF03485 Arginyl tRNA synthetase N terminal domain VI35_00920 PF05746 DALR anticodon binding domain VI35_00920 PF00750 tRNA synthetases class I (R) VI35_00930 PF04545 Sigma-70, region 4 VI35_00930 PF04542 Sigma-70 region 2 VI35_00935 PF12973 ChrR Cupin-like domain VI35_00940 PF02673 Bacitracin resistance protein BacA VI35_00950 PF01263 Aldose 1-epimerase VI35_00960 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VI35_00960 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VI35_00965 PF16363 GDP-mannose 4,6 dehydratase VI35_00970 PF00356 Bacterial regulatory proteins, lacI family VI35_00975 PF02837 Glycosyl hydrolases family 2, sugar binding domain VI35_00975 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VI35_00975 PF00703 Glycosyl hydrolases family 2 VI35_00975 PF02929 Beta galactosidase small chain VI35_00975 PF16353 Domain of unknown function(DUF4981) VI35_00980 PF13407 Periplasmic binding protein domain VI35_00985 PF00005 ABC transporter VI35_00990 PF02653 Branched-chain amino acid transport system / permease component VI35_00995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VI35_00995 PF00672 HAMP domain VI35_00995 PF02743 Cache domain VI35_01015 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VI35_01015 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VI35_01025 PF01316 Arginine repressor, DNA binding domain VI35_01025 PF02863 Arginine repressor, C-terminal domain VI35_01035 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VI35_01035 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VI35_01060 PF02743 Cache domain VI35_01060 PF00672 HAMP domain VI35_01060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VI35_01070 PF08212 Lipocalin-like domain VI35_01080 PF00465 Iron-containing alcohol dehydrogenase VI35_01085 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VI35_01085 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VI35_01085 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch VI35_01090 PF02233 NAD(P) transhydrogenase beta subunit VI35_01095 PF08348 YheO-like PAS domain VI35_01095 PF13309 HTH domain VI35_01100 PF03313 Serine dehydratase alpha chain VI35_01105 PF13525 Outer membrane lipoprotein VI35_01110 PF01479 S4 domain VI35_01110 PF00849 RNA pseudouridylate synthase VI35_01130 PF03590 Aspartate-ammonia ligase VI35_01135 PF01037 Lrp/AsnC ligand binding domain VI35_01145 PF00478 IMP dehydrogenase / GMP reductase domain VI35_01145 PF00571 CBS domain VI35_01165 PF00512 His Kinase A (phospho-acceptor) domain VI35_01165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VI35_01175 PF00072 Response regulator receiver domain VI35_01175 PF00158 Sigma-54 interaction domain VI35_01180 PF06496 Protein of unknown function (DUF1097) VI35_01190 PF00174 Oxidoreductase molybdopterin binding domain VI35_01210 PF00072 Response regulator receiver domain VI35_01210 PF00486 Transcriptional regulatory protein, C terminal VI35_01230 PF03264 NapC/NirT cytochrome c family, N-terminal region VI35_01235 PF01751 Toprim domain VI35_01235 PF01131 DNA topoisomerase VI35_01245 PF02254 TrkA-N domain VI35_01245 PF02080 TrkA-C domain VI35_01250 PF01565 FAD binding domain VI35_01250 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VI35_01255 PF03099 Biotin/lipoate A/B protein ligase family VI35_01255 PF02237 Biotin protein ligase C terminal domain VI35_01255 PF08279 HTH domain VI35_01260 PF00485 Phosphoribulokinase / Uridine kinase family VI35_01275 PF03143 Elongation factor Tu C-terminal domain VI35_01275 PF03144 Elongation factor Tu domain 2 VI35_01275 PF00009 Elongation factor Tu GTP binding domain VI35_01285 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VI35_01290 PF00467 KOW motif VI35_01290 PF02357 Transcription termination factor nusG VI35_01295 PF00298 Ribosomal protein L11, RNA binding domain VI35_01295 PF03946 Ribosomal protein L11, N-terminal domain VI35_01300 PF00687 Ribosomal protein L1p/L10e family VI35_01305 PF00466 Ribosomal protein L10 VI35_01310 PF00542 Ribosomal protein L7/L12 C-terminal domain VI35_01310 PF16320 Ribosomal protein L7/L12 dimerisation domain VI35_01315 PF04563 RNA polymerase beta subunit VI35_01315 PF04560 RNA polymerase Rpb2, domain 7 VI35_01315 PF00562 RNA polymerase Rpb2, domain 6 VI35_01315 PF10385 RNA polymerase beta subunit external 1 domain VI35_01315 PF04561 RNA polymerase Rpb2, domain 2 VI35_01315 PF04565 RNA polymerase Rpb2, domain 3 VI35_01320 PF04998 RNA polymerase Rpb1, domain 5 VI35_01320 PF04997 RNA polymerase Rpb1, domain 1 VI35_01320 PF00623 RNA polymerase Rpb1, domain 2 VI35_01320 PF05000 RNA polymerase Rpb1, domain 4 VI35_01320 PF04983 RNA polymerase Rpb1, domain 3 VI35_01325 PF13309 HTH domain VI35_01325 PF08348 YheO-like PAS domain VI35_01330 PF01042 Endoribonuclease L-PSP VI35_01335 PF02635 DsrE/DsrF-like family VI35_01340 PF02635 DsrE/DsrF-like family VI35_01345 PF04077 DsrH like protein VI35_01350 PF00164 Ribosomal protein S12/S23 VI35_01355 PF00177 Ribosomal protein S7p/S5e VI35_01360 PF14492 Elongation Factor G, domain II VI35_01360 PF00679 Elongation factor G C-terminus VI35_01360 PF03144 Elongation factor Tu domain 2 VI35_01360 PF00009 Elongation factor Tu GTP binding domain VI35_01360 PF03764 Elongation factor G, domain IV VI35_01365 PF03143 Elongation factor Tu C-terminal domain VI35_01365 PF03144 Elongation factor Tu domain 2 VI35_01365 PF00009 Elongation factor Tu GTP binding domain VI35_01405 PF03079 ARD/ARD' family VI35_01410 PF00860 Permease family VI35_01415 PF02733 Dak1 domain VI35_01420 PF02734 DAK2 domain VI35_01430 PF00158 Sigma-54 interaction domain VI35_01430 PF00989 PAS fold VI35_01430 PF02954 Bacterial regulatory protein, Fis family VI35_01435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_01435 PF03466 LysR substrate binding domain VI35_01440 PF04371 Porphyromonas-type peptidyl-arginine deiminase VI35_01445 PF00795 Carbon-nitrogen hydrolase VI35_01450 PF13416 Bacterial extracellular solute-binding protein VI35_01455 PF04371 Porphyromonas-type peptidyl-arginine deiminase VI35_01460 PF00106 short chain dehydrogenase VI35_01465 PF01594 AI-2E family transporter VI35_01470 PF00293 NUDIX domain VI35_01490 PF00199 Catalase VI35_01490 PF06628 Catalase-related immune-responsive VI35_01495 PF00583 Acetyltransferase (GNAT) family VI35_01525 PF00005 ABC transporter VI35_01525 PF08402 TOBE domain VI35_01535 PF00528 Binding-protein-dependent transport system inner membrane component VI35_01550 PF00392 Bacterial regulatory proteins, gntR family VI35_01550 PF07702 UTRA domain VI35_01560 PF03466 LysR substrate binding domain VI35_01560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_01570 PF02678 Pirin VI35_01570 PF17954 Quercetinase C-terminal cupin domain VI35_01575 PF07681 DoxX VI35_01590 PF13538 UvrD-like helicase C-terminal domain VI35_01600 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VI35_01610 PF00909 Ammonium Transporter Family VI35_01615 PF00543 Nitrogen regulatory protein P-II VI35_01630 PF00672 HAMP domain VI35_01630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VI35_01640 PF00486 Transcriptional regulatory protein, C terminal VI35_01640 PF00072 Response regulator receiver domain VI35_01645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VI35_01645 PF00672 HAMP domain VI35_01645 PF00512 His Kinase A (phospho-acceptor) domain VI35_01650 PF00313 'Cold-shock' DNA-binding domain VI35_01670 PF00436 Single-strand binding protein family VI35_01675 PF00196 Bacterial regulatory proteins, luxR family VI35_01685 PF03922 OmpW family VI35_01690 PF00672 HAMP domain VI35_01690 PF12729 Four helix bundle sensory module for signal transduction VI35_01690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VI35_01705 PF02219 Methylenetetrahydrofolate reductase VI35_01715 PF03594 Benzoate membrane transport protein VI35_01720 PF07883 Cupin domain VI35_01720 PF01381 Helix-turn-helix VI35_01750 PF04363 Protein of unknown function (DUF496) VI35_01760 PF04751 Protein of unknown function (DUF615) VI35_01765 PF01523 Putative modulator of DNA gyrase VI35_01770 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VI35_01775 PF01722 BolA-like protein VI35_01785 PF05494 MlaC protein VI35_01790 PF02470 MlaD protein VI35_01795 PF02405 Permease MlaE VI35_01800 PF00005 ABC transporter VI35_01805 PF01380 SIS domain VI35_01805 PF00571 CBS domain VI35_01820 PF03968 OstA-like protein VI35_01825 PF12399 Branched-chain amino acid ATP-binding cassette transporter VI35_01825 PF00005 ABC transporter VI35_01830 PF04552 Sigma-54, DNA binding domain VI35_01830 PF00309 Sigma-54 factor, Activator interacting domain (AID) VI35_01830 PF04963 Sigma-54 factor, core binding domain VI35_01835 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VI35_01840 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VI35_01845 PF03668 P-loop ATPase protein family VI35_01850 PF00381 PTS HPr component phosphorylation site VI35_01855 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VI35_01855 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VI35_01855 PF02378 Phosphotransferase system, EIIC VI35_01865 PF03841 L-seryl-tRNA selenium transferase VI35_01870 PF01979 Amidohydrolase family VI35_01900 PF13180 PDZ domain VI35_01905 PF13180 PDZ domain VI35_01905 PF00595 PDZ domain VI35_01920 PF00572 Ribosomal protein L13 VI35_01925 PF00380 Ribosomal protein S9/S16 VI35_01930 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VI35_01930 PF00355 Rieske [2Fe-2S] domain VI35_01935 PF00033 Cytochrome b/b6/petB VI35_01935 PF00032 Cytochrome b(C-terminal)/b6/petD VI35_01945 PF02798 Glutathione S-transferase, N-terminal domain VI35_01945 PF00043 Glutathione S-transferase, C-terminal domain VI35_01950 PF04386 Stringent starvation protein B VI35_01955 PF04972 BON domain VI35_01960 PF13580 SIS domain VI35_01965 PF02021 Uncharacterised protein family UPF0102 VI35_01970 PF04348 LppC putative lipoprotein VI35_01975 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VI35_01990 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VI35_01995 PF00813 FliP family VI35_02000 PF01313 Bacterial export proteins, family 3 VI35_02005 PF01311 Bacterial export proteins, family 1 VI35_02010 PF01312 FlhB HrpN YscU SpaS Family VI35_02020 PF00158 Sigma-54 interaction domain VI35_02020 PF00072 Response regulator receiver domain VI35_02020 PF02954 Bacterial regulatory protein, Fis family VI35_02030 PF08345 Flagellar M-ring protein C-terminal VI35_02030 PF01514 Secretory protein of YscJ/FliF family VI35_02035 PF14841 FliG middle domain VI35_02035 PF01706 FliG C-terminal domain VI35_02035 PF14842 FliG N-terminal domain VI35_02045 PF18269 T3SS EscN ATPase C-terminal domain VI35_02045 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VI35_02065 PF13144 Chaperone for flagella basal body P-ring formation VI35_02070 PF00460 Flagella basal body rod protein VI35_02075 PF00460 Flagella basal body rod protein VI35_02075 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VI35_02080 PF13861 FlgD Tudor-like domain VI35_02080 PF13860 FlgD Ig-like domain VI35_02080 PF03963 Flagellar hook capping protein - N-terminal region VI35_02085 PF00460 Flagella basal body rod protein VI35_02085 PF07559 Flagellar basal body protein FlaE VI35_02085 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VI35_02090 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VI35_02090 PF00460 Flagella basal body rod protein VI35_02095 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VI35_02095 PF00460 Flagella basal body rod protein VI35_02100 PF02107 Flagellar L-ring protein VI35_02105 PF02119 Flagellar P-ring protein VI35_02115 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VI35_02115 PF00460 Flagella basal body rod protein VI35_02140 PF00700 Bacterial flagellin C-terminal helical region VI35_02140 PF00669 Bacterial flagellin N-terminal helical region VI35_02145 PF00700 Bacterial flagellin C-terminal helical region VI35_02145 PF00669 Bacterial flagellin N-terminal helical region VI35_02150 PF02465 Flagellar hook-associated protein 2 N-terminus VI35_02150 PF07196 Flagellin hook IN motif VI35_02150 PF07195 Flagellar hook-associated protein 2 C-terminus VI35_02155 PF02561 Flagellar protein FliS VI35_02175 PF04542 Sigma-70 region 2 VI35_02175 PF04545 Sigma-70, region 4 VI35_02180 PF01618 MotA/TolQ/ExbB proton channel family VI35_02185 PF13677 Membrane MotB of proton-channel complex MotA/MotB VI35_02185 PF00691 OmpA family VI35_02195 PF01476 LysM domain VI35_02195 PF01464 Transglycosylase SLT domain VI35_02205 PF02381 MraZ protein, putative antitoxin-like VI35_02215 PF04999 Cell division protein FtsL VI35_02220 PF03717 Penicillin-binding Protein dimerisation domain VI35_02220 PF00905 Penicillin binding protein transpeptidase domain VI35_02225 PF02875 Mur ligase family, glutamate ligase domain VI35_02225 PF01225 Mur ligase family, catalytic domain VI35_02225 PF08245 Mur ligase middle domain VI35_02230 PF01225 Mur ligase family, catalytic domain VI35_02230 PF02875 Mur ligase family, glutamate ligase domain VI35_02230 PF08245 Mur ligase middle domain VI35_02235 PF00953 Glycosyl transferase family 4 VI35_02235 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VI35_02245 PF01098 Cell cycle protein VI35_02250 PF04101 Glycosyltransferase family 28 C-terminal domain VI35_02250 PF03033 Glycosyltransferase family 28 N-terminal domain VI35_02255 PF01225 Mur ligase family, catalytic domain VI35_02255 PF02875 Mur ligase family, glutamate ligase domain VI35_02255 PF08245 Mur ligase middle domain VI35_02265 PF02491 SHS2 domain inserted in FTSA VI35_02270 PF12327 FtsZ family, C-terminal domain VI35_02270 PF00091 Tubulin/FtsZ family, GTPase domain VI35_02275 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VI35_02285 PF01043 SecA preprotein cross-linking domain VI35_02285 PF07516 SecA Wing and Scaffold domain VI35_02285 PF07517 SecA DEAD-like domain VI35_02285 PF02810 SEC-C motif VI35_02295 PF00293 NUDIX domain VI35_02300 PF03884 DNA gyrase inhibitor YacG VI35_02305 PF07072 Cell division protein VI35_02310 PF01121 Dephospho-CoA kinase VI35_02315 PF06750 Bacterial Peptidase A24 N-terminal domain VI35_02315 PF01478 Type IV leader peptidase family VI35_02320 PF00482 Type II secretion system (T2SS), protein F VI35_02325 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VI35_02325 PF00437 Type II/IV secretion system protein VI35_02330 PF07963 Prokaryotic N-terminal methylation motif VI35_02335 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VI35_02335 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VI35_02360 PF17831 Pyruvate dehydrogenase E1 component middle domain VI35_02360 PF00456 Transketolase, thiamine diphosphate binding domain VI35_02365 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VI35_02365 PF00364 Biotin-requiring enzyme VI35_02365 PF02817 e3 binding domain VI35_02370 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VI35_02370 PF07992 Pyridine nucleotide-disulphide oxidoreductase VI35_02380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VI35_02380 PF12729 Four helix bundle sensory module for signal transduction VI35_02380 PF00672 HAMP domain VI35_02385 PF12729 Four helix bundle sensory module for signal transduction VI35_02385 PF00672 HAMP domain VI35_02385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VI35_02390 PF01734 Patatin-like phospholipase VI35_02395 PF06434 Aconitate hydratase 2 N-terminus VI35_02395 PF00330 Aconitase family (aconitate hydratase) VI35_02395 PF11791 Aconitate B N-terminal domain VI35_02400 PF00563 EAL domain VI35_02400 PF12792 CSS motif domain associated with EAL VI35_02405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_02405 PF03466 LysR substrate binding domain VI35_02410 PF01810 LysE type translocator VI35_02415 PF01565 FAD binding domain VI35_02415 PF04030 D-arabinono-1,4-lactone oxidase VI35_02420 PF07683 Cobalamin synthesis protein cobW C-terminal domain VI35_02420 PF02492 CobW/HypB/UreG, nucleotide-binding domain VI35_02425 PF07690 Major Facilitator Superfamily VI35_02435 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VI35_02440 PF02152 Dihydroneopterin aldolase VI35_02445 PF02660 Glycerol-3-phosphate acyltransferase VI35_02490 PF00892 EamA-like transporter family VI35_02495 PF01037 Lrp/AsnC ligand binding domain VI35_02500 PF12464 Maltose acetyltransferase VI35_02500 PF14602 Hexapeptide repeat of succinyl-transferase VI35_02510 PF00367 phosphotransferase system, EIIB VI35_02510 PF02378 Phosphotransferase system, EIIC VI35_02515 PF00356 Bacterial regulatory proteins, lacI family VI35_02530 PF00710 Asparaginase, N-terminal VI35_02530 PF17763 Glutaminase/Asparaginase C-terminal domain VI35_02545 PF02142 MGS-like domain VI35_02550 PF00210 Ferritin-like domain VI35_02565 PF08351 Domain of unknown function (DUF1726) VI35_02565 PF05127 Helicase VI35_02565 PF13718 GNAT acetyltransferase 2 VI35_02565 PF17176 tRNA-binding domain VI35_02570 PF00116 Cytochrome C oxidase subunit II, periplasmic domain VI35_02570 PF02790 Cytochrome C oxidase subunit II, transmembrane domain VI35_02580 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 VI35_02585 PF00510 Cytochrome c oxidase subunit III VI35_02610 PF01040 UbiA prenyltransferase family VI35_02620 PF00528 Binding-protein-dependent transport system inner membrane component VI35_02625 PF00528 Binding-protein-dependent transport system inner membrane component VI35_02630 PF00005 ABC transporter VI35_02630 PF08402 TOBE domain VI35_02640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_02640 PF03466 LysR substrate binding domain VI35_02685 PF00534 Glycosyl transferases group 1 VI35_02685 PF08323 Starch synthase catalytic domain VI35_02690 PF00483 Nucleotidyl transferase VI35_02700 PF00701 Dihydrodipicolinate synthetase family VI35_02710 PF13419 Haloacid dehalogenase-like hydrolase VI35_02715 PF17209 Hfq protein VI35_02720 PF04403 Paraquat-inducible protein A VI35_02725 PF02470 MlaD protein VI35_02730 PF03886 ABC-type transport auxiliary lipoprotein component VI35_02735 PF00691 OmpA family VI35_02735 PF01389 OmpA-like transmembrane domain VI35_02740 PF00657 GDSL-like Lipase/Acylhydrolase VI35_02750 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VI35_02750 PF01464 Transglycosylase SLT domain VI35_02755 PF04362 Bacterial Fe(2+) trafficking VI35_02760 PF10576 Iron-sulfur binding domain of endonuclease III VI35_02760 PF00730 HhH-GPD superfamily base excision DNA repair protein VI35_02760 PF14815 NUDIX domain VI35_02760 PF00633 Helix-hairpin-helix motif VI35_02770 PF01471 Putative peptidoglycan binding domain VI35_02770 PF13401 AAA domain VI35_02775 PF01966 HD domain VI35_02775 PF12627 Probable RNA and SrmB- binding site of polymerase A VI35_02775 PF01743 Poly A polymerase head domain VI35_02780 PF01384 Phosphate transporter family VI35_02785 PF01865 Protein of unknown function DUF47 VI35_02795 PF05433 Glycine zipper 2TM domain VI35_02800 PF00583 Acetyltransferase (GNAT) family VI35_02805 PF01321 Creatinase/Prolidase N-terminal domain VI35_02805 PF00557 Metallopeptidase family M24 VI35_02810 PF00392 Bacterial regulatory proteins, gntR family VI35_02815 PF01293 Phosphoenolpyruvate carboxykinase VI35_02820 PF01430 Hsp33 protein VI35_02825 PF01479 S4 domain VI35_02830 PF11356 Type II secretion system protein C VI35_02840 PF00437 Type II/IV secretion system protein VI35_02845 PF00482 Type II secretion system (T2SS), protein F VI35_02850 PF08334 Type II secretion system (T2SS), protein G VI35_02850 PF07963 Prokaryotic N-terminal methylation motif VI35_02855 PF12019 Type II transport protein GspH VI35_02855 PF07963 Prokaryotic N-terminal methylation motif VI35_02860 PF02501 Type II secretion system (T2SS), protein I VI35_02860 PF07963 Prokaryotic N-terminal methylation motif VI35_02865 PF11612 Type II secretion system (T2SS), protein J VI35_02865 PF07963 Prokaryotic N-terminal methylation motif VI35_02875 PF05134 Type II secretion system (T2SS), protein L VI35_02875 PF12693 GspL periplasmic domain VI35_02880 PF04612 Type II secretion system (T2SS), protein M VI35_02885 PF01203 Type II secretion system (T2SS), protein N VI35_02890 PF00196 Bacterial regulatory proteins, luxR family VI35_02895 PF01479 S4 domain VI35_02895 PF00579 tRNA synthetases class I (W and Y) VI35_02900 PF03466 LysR substrate binding domain VI35_02900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_02905 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VI35_02910 PF13419 Haloacid dehalogenase-like hydrolase VI35_02915 PF00293 NUDIX domain VI35_02920 PF00459 Inositol monophosphatase family VI35_02930 PF01588 Putative tRNA binding domain VI35_02940 PF01340 Met Apo-repressor, MetJ VI35_02945 PF01053 Cys/Met metabolism PLP-dependent enzyme VI35_02950 PF00696 Amino acid kinase family VI35_02950 PF03447 Homoserine dehydrogenase, NAD binding domain VI35_02950 PF00742 Homoserine dehydrogenase VI35_02955 PF04172 LrgB-like family VI35_02960 PF03788 LrgA family VI35_02965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_02965 PF03466 LysR substrate binding domain VI35_03005 PF13426 PAS domain VI35_03005 PF08448 PAS fold VI35_03005 PF05231 MASE1 VI35_03005 PF00990 Diguanylate cyclase, GGDEF domain VI35_03005 PF00563 EAL domain VI35_03005 PF08447 PAS fold VI35_03010 PF00311 Phosphoenolpyruvate carboxylase VI35_03015 PF01546 Peptidase family M20/M25/M40 VI35_03015 PF07687 Peptidase dimerisation domain VI35_03020 PF01118 Semialdehyde dehydrogenase, NAD binding domain VI35_03020 PF02774 Semialdehyde dehydrogenase, dimerisation domain VI35_03025 PF00696 Amino acid kinase family VI35_03030 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VI35_03030 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VI35_03035 PF00764 Arginosuccinate synthase VI35_03040 PF00206 Lyase VI35_03040 PF14698 Argininosuccinate lyase C-terminal VI35_03045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_03045 PF03466 LysR substrate binding domain VI35_03055 PF14552 Tautomerase enzyme VI35_03085 PF11999 Protein of unknown function (DUF3494) VI35_03085 PF02368 Bacterial Ig-like domain (group 2) VI35_03100 PF14602 Hexapeptide repeat of succinyl-transferase VI35_03100 PF12464 Maltose acetyltransferase VI35_03105 PF13194 Domain of unknown function (DUF4010) VI35_03110 PF00497 Bacterial extracellular solute-binding proteins, family 3 VI35_03115 PF00005 ABC transporter VI35_03120 PF00528 Binding-protein-dependent transport system inner membrane component VI35_03125 PF00528 Binding-protein-dependent transport system inner membrane component VI35_03130 PF00291 Pyridoxal-phosphate dependent enzyme VI35_03165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VI35_03165 PF00672 HAMP domain VI35_03165 PF02743 Cache domain VI35_03170 PF00027 Cyclic nucleotide-binding domain VI35_03170 PF00520 Ion transport protein VI35_03175 PF08239 Bacterial SH3 domain VI35_03180 PF09297 NADH pyrophosphatase zinc ribbon domain VI35_03180 PF00293 NUDIX domain VI35_03185 PF01208 Uroporphyrinogen decarboxylase (URO-D) VI35_03190 PF00480 ROK family VI35_03200 PF00162 Phosphoglycerate kinase VI35_03205 PF01116 Fructose-bisphosphate aldolase class-II VI35_03210 PF01266 FAD dependent oxidoreductase VI35_03220 PF02683 Cytochrome C biogenesis protein transmembrane region VI35_03220 PF11412 Disulphide bond corrector protein DsbC VI35_03225 PF03091 CutA1 divalent ion tolerance protein VI35_03240 PF03466 LysR substrate binding domain VI35_03240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_03245 PF01571 Aminomethyltransferase folate-binding domain VI35_03250 PF03937 Flavinator of succinate dehydrogenase VI35_03260 PF02910 Fumarate reductase flavoprotein C-term VI35_03260 PF00890 FAD binding domain VI35_03265 PF04542 Sigma-70 region 2 VI35_03265 PF08281 Sigma-70, region 4 VI35_03270 PF03873 Anti sigma-E protein RseA, C-terminal domain VI35_03270 PF03872 Anti sigma-E protein RseA, N-terminal domain VI35_03275 PF03888 MucB/RseB N-terminal domain VI35_03275 PF17188 MucB/RseB C-terminal domain VI35_03285 PF00679 Elongation factor G C-terminus VI35_03285 PF06421 GTP-binding protein LepA C-terminus VI35_03285 PF03144 Elongation factor Tu domain 2 VI35_03285 PF00009 Elongation factor Tu GTP binding domain VI35_03290 PF10502 Signal peptidase, peptidase S26 VI35_03295 PF00035 Double-stranded RNA binding motif VI35_03295 PF14622 Ribonuclease-III-like VI35_03300 PF01926 50S ribosome-binding GTPase VI35_03300 PF07650 KH domain VI35_03305 PF02565 Recombination protein O C terminal VI35_03305 PF11967 Recombination protein O N terminal VI35_03310 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VI35_03320 PF07308 Protein of unknown function (DUF1456) VI35_03325 PF00512 His Kinase A (phospho-acceptor) domain VI35_03325 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VI35_03325 PF01627 Hpt domain VI35_03325 PF00072 Response regulator receiver domain VI35_03325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VI35_03325 PF00672 HAMP domain VI35_03330 PF01938 TRAM domain VI35_03330 PF05958 tRNA (Uracil-5-)-methyltransferase VI35_03335 PF13291 ACT domain VI35_03335 PF04607 Region found in RelA / SpoT proteins VI35_03335 PF02824 TGS domain VI35_03340 PF03819 MazG nucleotide pyrophosphohydrolase domain VI35_03345 PF06418 CTP synthase N-terminus VI35_03345 PF00117 Glutamine amidotransferase class-I VI35_03350 PF00113 Enolase, C-terminal TIM barrel domain VI35_03350 PF03952 Enolase, N-terminal domain VI35_03355 PF04977 Septum formation initiator VI35_03360 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VI35_03365 PF02542 YgbB family VI35_03370 PF01142 tRNA pseudouridine synthase D (TruD) VI35_03385 PF09335 SNARE associated Golgi protein VI35_03390 PF01551 Peptidase family M23 VI35_03390 PF01476 LysM domain VI35_03395 PF04545 Sigma-70, region 4 VI35_03395 PF04539 Sigma-70 region 3 VI35_03395 PF00140 Sigma-70 factor, region 1.2 VI35_03395 PF04542 Sigma-70 region 2 VI35_03400 PF00814 Glycoprotease family VI35_03405 PF01165 Ribosomal protein S21 VI35_03410 PF09424 Yqey-like protein VI35_03415 PF01807 CHC2 zinc finger VI35_03415 PF08275 DNA primase catalytic core, N-terminal domain VI35_03415 PF08278 DNA primase DnaG DnaB-binding VI35_03415 PF10410 DnaB-helicase binding domain of primase VI35_03420 PF03979 Sigma-70 factor, region 1.1 VI35_03420 PF00140 Sigma-70 factor, region 1.2 VI35_03420 PF04545 Sigma-70, region 4 VI35_03420 PF04546 Sigma-70, non-essential region VI35_03420 PF04539 Sigma-70 region 3 VI35_03420 PF04542 Sigma-70 region 2 VI35_03435 PF00128 Alpha amylase, catalytic domain VI35_03455 PF02142 MGS-like domain VI35_03455 PF01808 AICARFT/IMPCHase bienzyme VI35_03460 PF13411 MerR HTH family regulatory protein VI35_03470 PF03889 Alternative ribosome-rescue factor A VI35_03480 PF06969 HemN C-terminal domain VI35_03480 PF04055 Radical SAM superfamily VI35_03490 PF07690 Major Facilitator Superfamily VI35_03495 PF02894 Oxidoreductase family, C-terminal alpha/beta domain VI35_03495 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VI35_03505 PF01957 NfeD-like C-terminal, partner-binding VI35_03510 PF16200 C-terminal region of band_7 VI35_03510 PF01145 SPFH domain / Band 7 family VI35_03515 PF14824 Sirohaem biosynthesis protein central VI35_03515 PF10414 Sirohaem synthase dimerisation region VI35_03515 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VI35_03520 PF01507 Phosphoadenosine phosphosulfate reductase family VI35_03525 PF00009 Elongation factor Tu GTP binding domain VI35_03530 PF03600 Citrate transporter VI35_03530 PF02080 TrkA-C domain VI35_03545 PF12729 Four helix bundle sensory module for signal transduction VI35_03545 PF00672 HAMP domain VI35_03545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VI35_03565 PF00005 ABC transporter VI35_03580 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VI35_03595 PF00719 Inorganic pyrophosphatase VI35_03600 PF01225 Mur ligase family, catalytic domain VI35_03600 PF08245 Mur ligase middle domain VI35_03600 PF02875 Mur ligase family, glutamate ligase domain VI35_03605 PF02441 Flavoprotein VI35_03610 PF00440 Bacterial regulatory proteins, tetR family VI35_03615 PF00156 Phosphoribosyl transferase domain VI35_03620 PF00005 ABC transporter VI35_03625 PF01061 ABC-2 type transporter VI35_03640 PF02548 Ketopantoate hydroxymethyltransferase VI35_03650 PF01743 Poly A polymerase head domain VI35_03650 PF12626 Polymerase A arginine-rich C-terminus VI35_03650 PF12627 Probable RNA and SrmB- binding site of polymerase A VI35_03660 PF01258 Prokaryotic dksA/traR C4-type zinc finger VI35_03675 PF00270 DEAD/DEAH box helicase VI35_03675 PF00271 Helicase conserved C-terminal domain VI35_03675 PF04408 Helicase associated domain (HA2) VI35_03675 PF08482 ATP-dependent helicase C-terminal VI35_03685 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VI35_03690 PF00893 Small Multidrug Resistance protein VI35_03695 PF00893 Small Multidrug Resistance protein VI35_03725 PF00202 Aminotransferase class-III VI35_03765 PF01810 LysE type translocator VI35_03770 PF02954 Bacterial regulatory protein, Fis family VI35_03775 PF01207 Dihydrouridine synthase (Dus) VI35_03785 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VI35_03815 PF00072 Response regulator receiver domain VI35_03820 PF00854 POT family VI35_03825 PF00483 Nucleotidyl transferase VI35_03835 PF00459 Inositol monophosphatase family VI35_03840 PF03795 YCII-related domain VI35_03845 PF04279 Intracellular septation protein A VI35_03850 PF00282 Pyridoxal-dependent decarboxylase conserved domain VI35_03855 PF03006 Haemolysin-III related VI35_03860 PF02080 TrkA-C domain VI35_03860 PF06826 Predicted Permease Membrane Region VI35_03950 PF07690 Major Facilitator Superfamily VI35_03955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_03955 PF03466 LysR substrate binding domain VI35_03960 PF03413 Peptidase propeptide and YPEB domain VI35_03960 PF04151 Bacterial pre-peptidase C-terminal domain VI35_03960 PF02868 Thermolysin metallopeptidase, alpha-helical domain VI35_03960 PF07504 Fungalysin/Thermolysin Propeptide Motif VI35_03960 PF01447 Thermolysin metallopeptidase, catalytic domain VI35_03965 PF13302 Acetyltransferase (GNAT) domain VI35_03970 PF13302 Acetyltransferase (GNAT) domain VI35_03980 PF04074 YhcH/YjgK/YiaL VI35_03985 PF00871 Acetokinase family VI35_03990 PF00924 Mechanosensitive ion channel VI35_04000 PF00474 Sodium:solute symporter family VI35_04010 PF13411 MerR HTH family regulatory protein VI35_04035 PF02525 Flavodoxin-like fold VI35_04040 PF03466 LysR substrate binding domain VI35_04040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_04045 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ VI35_04055 PF00005 ABC transporter VI35_04055 PF12848 ABC transporter VI35_04060 PF00478 IMP dehydrogenase / GMP reductase domain VI35_04060 PF00571 CBS domain VI35_04065 PF00267 Gram-negative porin VI35_04070 PF01584 CheW-like domain VI35_04070 PF00072 Response regulator receiver domain VI35_04080 PF00005 ABC transporter VI35_04100 PF00155 Aminotransferase class I and II VI35_04105 PF04389 Peptidase family M28 VI35_04105 PF01483 Proprotein convertase P-domain VI35_04110 PF02390 Putative methyltransferase VI35_04115 PF04320 Protein with unknown function (DUF469) VI35_04120 PF04960 Glutaminase VI35_04130 PF06082 Exopolysaccharide biosynthesis protein YbjH VI35_04135 PF06251 Capsule biosynthesis GfcC VI35_04140 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF VI35_04165 PF06004 Bacterial protein of unknown function (DUF903) VI35_04170 PF00005 ABC transporter VI35_04170 PF00664 ABC transporter transmembrane region VI35_04200 PF06877 Regulator of ribonuclease activity B VI35_04205 PF03707 Bacterial signalling protein N terminal repeat VI35_04205 PF00990 Diguanylate cyclase, GGDEF domain VI35_04205 PF00563 EAL domain VI35_04225 PF09905 DNA-binding protein VF530 VI35_04235 PF03193 RsgA GTPase VI35_04240 PF00929 Exonuclease VI35_04280 PF00313 'Cold-shock' DNA-binding domain VI35_04290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VI35_04290 PF00672 HAMP domain VI35_04295 PF00749 tRNA synthetases class I (E and Q), catalytic domain VI35_04300 PF00749 tRNA synthetases class I (E and Q), catalytic domain VI35_04305 PF00749 tRNA synthetases class I (E and Q), catalytic domain VI35_04355 PF02472 Biopolymer transport protein ExbD/TolR VI35_04360 PF01618 MotA/TolQ/ExbB proton channel family VI35_04365 PF01618 MotA/TolQ/ExbB proton channel family VI35_04380 PF00528 Binding-protein-dependent transport system inner membrane component VI35_04385 PF12911 N-terminal TM domain of oligopeptide transport permease C VI35_04385 PF00528 Binding-protein-dependent transport system inner membrane component VI35_04390 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VI35_04395 PF00005 ABC transporter VI35_04395 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VI35_04400 PF00005 ABC transporter VI35_04400 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VI35_04410 PF07687 Peptidase dimerisation domain VI35_04410 PF01546 Peptidase family M20/M25/M40 VI35_04420 PF00156 Phosphoribosyl transferase domain VI35_04430 PF07417 Sigma factor-binding transcriptional regulator Crl VI35_04440 PF00171 Aldehyde dehydrogenase family VI35_04450 PF00582 Universal stress protein family VI35_04465 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VI35_04465 PF00384 Molybdopterin oxidoreductase VI35_04465 PF04324 BFD-like [2Fe-2S] binding domain VI35_04465 PF01568 Molydopterin dinucleotide binding domain VI35_04470 PF14824 Sirohaem biosynthesis protein central VI35_04470 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VI35_04470 PF10414 Sirohaem synthase dimerisation region VI35_04485 PF00528 Binding-protein-dependent transport system inner membrane component VI35_04500 PF07992 Pyridine nucleotide-disulphide oxidoreductase VI35_04500 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VI35_04500 PF13806 Rieske-like [2Fe-2S] domain VI35_04500 PF04324 BFD-like [2Fe-2S] binding domain VI35_04500 PF18267 Rubredoxin NAD+ reductase C-terminal domain VI35_04500 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VI35_04505 PF00294 pfkB family carbohydrate kinase VI35_04510 PF04227 Indigoidine synthase A like protein VI35_04515 PF00194 Eukaryotic-type carbonic anhydrase VI35_04530 PF00994 Probable molybdopterin binding domain VI35_04540 PF06738 Putative threonine/serine exporter VI35_04545 PF12821 Threonine/Serine exporter, ThrE VI35_04555 PF00005 ABC transporter VI35_04555 PF00571 CBS domain VI35_04560 PF00528 Binding-protein-dependent transport system inner membrane component VI35_04565 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VI35_04570 PF01507 Phosphoadenosine phosphosulfate reductase family VI35_04580 PF00258 Flavodoxin VI35_04580 PF00175 Oxidoreductase NAD-binding domain VI35_04580 PF00667 FAD binding domain VI35_04590 PF01336 OB-fold nucleic acid binding domain VI35_04590 PF00152 tRNA synthetases class II (D, K and N) VI35_04605 PF03616 Sodium/glutamate symporter VI35_04610 PF17763 Glutaminase/Asparaginase C-terminal domain VI35_04610 PF00710 Asparaginase, N-terminal VI35_04615 PF07023 Protein of unknown function (DUF1315) VI35_04620 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VI35_04620 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VI35_04635 PF01343 Peptidase family S49 VI35_04640 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VI35_04640 PF07992 Pyridine nucleotide-disulphide oxidoreductase VI35_04645 PF00881 Nitroreductase family VI35_04650 PF02743 Cache domain VI35_04650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VI35_04650 PF00672 HAMP domain VI35_04655 PF14602 Hexapeptide repeat of succinyl-transferase VI35_04655 PF12464 Maltose acetyltransferase VI35_04665 PF00107 Zinc-binding dehydrogenase VI35_04665 PF08240 Alcohol dehydrogenase GroES-like domain VI35_04670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_04670 PF03466 LysR substrate binding domain VI35_04685 PF06196 Protein of unknown function (DUF997) VI35_04690 PF00289 Biotin carboxylase, N-terminal domain VI35_04690 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VI35_04690 PF02785 Biotin carboxylase C-terminal domain VI35_04695 PF00364 Biotin-requiring enzyme VI35_04700 PF01220 Dehydroquinase class II VI35_04705 PF16177 Acetyl-coenzyme A synthetase N-terminus VI35_04705 PF00501 AMP-binding enzyme VI35_04705 PF13193 AMP-binding enzyme C-terminal domain VI35_04720 PF02613 Nitrate reductase delta subunit VI35_04730 PF00464 Serine hydroxymethyltransferase VI35_04740 PF03477 ATP cone domain VI35_04745 PF01872 RibD C-terminal domain VI35_04745 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VI35_04750 PF00677 Lumazine binding domain VI35_04755 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VI35_04755 PF00925 GTP cyclohydrolase II VI35_04760 PF00885 6,7-dimethyl-8-ribityllumazine synthase VI35_04765 PF01029 NusB family VI35_04775 PF04608 Phosphatidylglycerophosphatase A VI35_04780 PF00005 ABC transporter VI35_04780 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VI35_04785 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VI35_04800 PF02780 Transketolase, C-terminal domain VI35_04800 PF02779 Transketolase, pyrimidine binding domain VI35_04800 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VI35_04805 PF00348 Polyprenyl synthetase VI35_04815 PF01618 MotA/TolQ/ExbB proton channel family VI35_04825 PF03449 Transcription elongation factor, N-terminal VI35_04825 PF01272 Transcription elongation factor, GreA/GreB, C-term VI35_04835 PF01985 CRS1 / YhbY (CRM) domain VI35_04840 PF01728 FtsJ-like methyltransferase VI35_04845 PF17862 AAA+ lid domain VI35_04845 PF06480 FtsH Extracellular VI35_04845 PF01434 Peptidase family M41 VI35_04845 PF00004 ATPase family associated with various cellular activities (AAA) VI35_04850 PF00809 Pterin binding enzyme VI35_04855 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VI35_04855 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VI35_04855 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VI35_04855 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VI35_04860 PF00121 Triosephosphate isomerase VI35_04865 PF03840 Preprotein translocase SecG subunit VI35_04880 PF17384 RimP C-terminal SH3 domain VI35_04880 PF02576 RimP N-terminal domain VI35_04885 PF00575 S1 RNA binding domain VI35_04885 PF08529 NusA N-terminal domain VI35_04885 PF13184 NusA-like KH domain VI35_04890 PF11987 Translation-initiation factor 2 VI35_04890 PF04760 Translation initiation factor IF-2, N-terminal region VI35_04890 PF08364 Bacterial translation initiation factor IF-2 associated region VI35_04890 PF00009 Elongation factor Tu GTP binding domain VI35_04895 PF02033 Ribosome-binding factor A VI35_04900 PF16198 tRNA pseudouridylate synthase B C-terminal domain VI35_04900 PF09157 Pseudouridine synthase II TruB, C-terminal VI35_04900 PF01509 TruB family pseudouridylate synthase (N terminal domain) VI35_04905 PF00312 Ribosomal protein S15 VI35_04910 PF03725 3' exoribonuclease family, domain 2 VI35_04910 PF01138 3' exoribonuclease family, domain 1 VI35_04910 PF00575 S1 RNA binding domain VI35_04910 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VI35_04910 PF00013 KH domain VI35_04915 PF07690 Major Facilitator Superfamily VI35_04920 PF02635 DsrE/DsrF-like family VI35_04925 PF06476 Protein of unknown function (DUF1090) VI35_04935 PF12838 4Fe-4S dicluster domain VI35_04945 PF17969 L,D-transpeptidase C-terminal domain VI35_04945 PF03734 L,D-transpeptidase catalytic domain VI35_04955 PF01523 Putative modulator of DNA gyrase VI35_04960 PF01523 Putative modulator of DNA gyrase VI35_04965 PF01523 Putative modulator of DNA gyrase VI35_04970 PF00258 Flavodoxin VI35_04975 PF00589 Phage integrase family VI35_04975 PF02899 Phage integrase, N-terminal SAM-like domain VI35_04980 PF01741 Large-conductance mechanosensitive channel, MscL VI35_04990 PF02272 DHHA1 domain VI35_04990 PF17768 RecJ OB domain VI35_04990 PF01368 DHH family VI35_04995 PF13411 MerR HTH family regulatory protein VI35_05010 PF02508 Rnf-Nqr subunit, membrane protein VI35_05020 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family VI35_05020 PF04055 Radical SAM superfamily VI35_05030 PF03099 Biotin/lipoate A/B protein ligase family VI35_05035 PF04359 Protein of unknown function (DUF493) VI35_05040 PF00768 D-alanyl-D-alanine carboxypeptidase VI35_05040 PF07943 Penicillin-binding protein 5, C-terminal domain VI35_05045 PF05036 Sporulation related domain VI35_05045 PF03330 Lytic transglycolase VI35_05050 PF13406 Transglycosylase SLT domain VI35_05055 PF01098 Cell cycle protein VI35_05060 PF00905 Penicillin binding protein transpeptidase domain VI35_05060 PF03717 Penicillin-binding Protein dimerisation domain VI35_05065 PF02590 Predicted SPOUT methyltransferase VI35_05075 PF01467 Cytidylyltransferase-like VI35_05095 PF13603 Leucyl-tRNA synthetase, Domain 2 VI35_05095 PF00133 tRNA synthetases class I (I, L, M and V) VI35_05095 PF08264 Anticodon-binding domain of tRNA VI35_05100 PF07295 Zinc-ribbon containing domain VI35_05105 PF00795 Carbon-nitrogen hydrolase VI35_05110 PF00571 CBS domain VI35_05110 PF03471 Transporter associated domain VI35_05120 PF02562 PhoH-like protein VI35_05125 PF00919 Uncharacterized protein family UPF0004 VI35_05125 PF04055 Radical SAM superfamily VI35_05125 PF01938 TRAM domain VI35_05130 PF01494 FAD binding domain VI35_05135 PF00857 Isochorismatase family VI35_05140 PF03466 LysR substrate binding domain VI35_05140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_05175 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VI35_05175 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VI35_05185 PF14226 non-haem dioxygenase in morphine synthesis N-terminal VI35_05185 PF03171 2OG-Fe(II) oxygenase superfamily VI35_05190 PF03180 NLPA lipoprotein VI35_05195 PF00005 ABC transporter VI35_05195 PF09383 NIL domain VI35_05205 PF09285 Elongation factor P, C-terminal VI35_05205 PF08207 Elongation factor P (EF-P) KOW-like domain VI35_05205 PF01132 Elongation factor P (EF-P) OB domain VI35_05215 PF00478 IMP dehydrogenase / GMP reductase domain VI35_05225 PF08521 Two-component sensor kinase N-terminal VI35_05225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VI35_05225 PF00512 His Kinase A (phospho-acceptor) domain VI35_05230 PF00486 Transcriptional regulatory protein, C terminal VI35_05230 PF00072 Response regulator receiver domain VI35_05240 PF00106 short chain dehydrogenase VI35_05280 PF02313 Fumarate reductase subunit D VI35_05285 PF02300 Fumarate reductase subunit C VI35_05290 PF13183 4Fe-4S dicluster domain VI35_05290 PF13085 2Fe-2S iron-sulfur cluster binding domain VI35_05295 PF02910 Fumarate reductase flavoprotein C-term VI35_05295 PF00890 FAD binding domain VI35_05300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VI35_05300 PF00672 HAMP domain VI35_05300 PF02743 Cache domain VI35_05305 PF03009 Glycerophosphoryl diester phosphodiesterase family VI35_05335 PF03466 LysR substrate binding domain VI35_05335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_05350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_05350 PF03466 LysR substrate binding domain VI35_05355 PF00905 Penicillin binding protein transpeptidase domain VI35_05355 PF17092 Penicillin-binding protein OB-like domain VI35_05355 PF00912 Transglycosylase VI35_05380 PF07660 Secretin and TonB N terminus short domain VI35_05380 PF03958 Bacterial type II/III secretion system short domain VI35_05380 PF11741 AMIN domain VI35_05380 PF00263 Bacterial type II and III secretion system protein VI35_05385 PF01202 Shikimate kinase VI35_05390 PF01761 3-dehydroquinate synthase VI35_05400 PF02086 D12 class N6 adenine-specific DNA methyltransferase VI35_05405 PF00834 Ribulose-phosphate 3 epimerase family VI35_05410 PF13419 Haloacid dehalogenase-like hydrolase VI35_05415 PF00579 tRNA synthetases class I (W and Y) VI35_05430 PF00202 Aminotransferase class-III VI35_05435 PF04958 Arginine N-succinyltransferase beta subunit VI35_05440 PF00171 Aldehyde dehydrogenase family VI35_05455 PF13419 Haloacid dehalogenase-like hydrolase VI35_05460 PF07690 Major Facilitator Superfamily VI35_05465 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VI35_05465 PF10371 Domain of unknown function VI35_05465 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg VI35_05465 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase VI35_05465 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II VI35_05490 PF07859 alpha/beta hydrolase fold VI35_05500 PF03600 Citrate transporter VI35_05500 PF02080 TrkA-C domain VI35_05545 PF01926 50S ribosome-binding GTPase VI35_05545 PF06071 Protein of unknown function (DUF933) VI35_05550 PF01195 Peptidyl-tRNA hydrolase VI35_05555 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VI35_05555 PF14572 Phosphoribosyl synthetase-associated domain VI35_05565 PF08544 GHMP kinases C terminal VI35_05565 PF00288 GHMP kinases N terminal domain VI35_05570 PF03550 Outer membrane lipoprotein LolB VI35_05575 PF01488 Shikimate / quinate 5-dehydrogenase VI35_05575 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VI35_05575 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VI35_05580 PF00472 RF-1 domain VI35_05580 PF03462 PCRF domain VI35_05595 PF13369 Transglutaminase-like superfamily VI35_05600 PF00793 DAHP synthetase I family VI35_05605 PF00375 Sodium:dicarboxylate symporter family VI35_05610 PF01228 Glycine radical VI35_05615 PF03167 Uracil DNA glycosylase superfamily VI35_05630 PF00923 Transaldolase/Fructose-6-phosphate aldolase VI35_05635 PF01235 Sodium:alanine symporter family VI35_05640 PF00144 Beta-lactamase VI35_05650 PF03466 LysR substrate binding domain VI35_05650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_05655 PF03652 Holliday junction resolvase VI35_05665 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VI35_05665 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VI35_05670 PF04452 RNA methyltransferase VI35_05675 PF04231 Endonuclease I VI35_05680 PF10263 SprT-like family VI35_05680 PF17283 SprT-like zinc ribbon domain VI35_05685 PF02773 S-adenosylmethionine synthetase, C-terminal domain VI35_05685 PF02772 S-adenosylmethionine synthetase, central domain VI35_05685 PF00438 S-adenosylmethionine synthetase, N-terminal domain VI35_05690 PF02780 Transketolase, C-terminal domain VI35_05690 PF00456 Transketolase, thiamine diphosphate binding domain VI35_05690 PF02779 Transketolase, pyrimidine binding domain VI35_05720 PF03702 Anhydro-N-acetylmuramic acid kinase VI35_05725 PF01476 LysM domain VI35_05725 PF08525 Opacity-associated protein A N-terminal motif VI35_05725 PF01551 Peptidase family M23 VI35_05730 PF00579 tRNA synthetases class I (W and Y) VI35_05740 PF01161 Phosphatidylethanolamine-binding protein VI35_05750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_05750 PF03466 LysR substrate binding domain VI35_05760 PF00155 Aminotransferase class I and II VI35_05765 PF07690 Major Facilitator Superfamily VI35_05770 PF03466 LysR substrate binding domain VI35_05770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_05775 PF00106 short chain dehydrogenase VI35_05780 PF01343 Peptidase family S49 VI35_05780 PF08496 Peptidase family S49 N-terminal VI35_05785 PF04996 Succinylarginine dihydrolase VI35_05790 PF01396 Topoisomerase DNA binding C4 zinc finger VI35_05790 PF08272 Topoisomerase I zinc-ribbon-like VI35_05790 PF01751 Toprim domain VI35_05790 PF01131 DNA topoisomerase VI35_05800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VI35_05800 PF08447 PAS fold VI35_05820 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VI35_05820 PF00005 ABC transporter VI35_05825 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VI35_05825 PF00005 ABC transporter VI35_05830 PF00528 Binding-protein-dependent transport system inner membrane component VI35_05830 PF12911 N-terminal TM domain of oligopeptide transport permease C VI35_05835 PF00528 Binding-protein-dependent transport system inner membrane component VI35_05840 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VI35_05850 PF00072 Response regulator receiver domain VI35_05860 PF01758 Sodium Bile acid symporter family VI35_05865 PF03960 ArsC family VI35_05875 PF02049 Flagellar hook-basal body complex protein FliE VI35_05885 PF01706 FliG C-terminal domain VI35_05885 PF14841 FliG middle domain VI35_05885 PF14842 FliG N-terminal domain VI35_05895 PF18269 T3SS EscN ATPase C-terminal domain VI35_05895 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VI35_05915 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VI35_05915 PF02154 Flagellar motor switch protein FliM VI35_05920 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VI35_05925 PF04347 Flagellar biosynthesis protein, FliO VI35_05930 PF00813 FliP family VI35_05935 PF01313 Bacterial export proteins, family 3 VI35_05940 PF01311 Bacterial export proteins, family 1 VI35_05945 PF01312 FlhB HrpN YscU SpaS Family VI35_05950 PF00771 FHIPEP family VI35_05955 PF00448 SRP54-type protein, GTPase domain VI35_05960 PF10609 NUBPL iron-transfer P-loop NTPase VI35_05965 PF04542 Sigma-70 region 2 VI35_05965 PF04545 Sigma-70, region 4 VI35_05965 PF04539 Sigma-70 region 3 VI35_05970 PF00072 Response regulator receiver domain VI35_05975 PF04344 Chemotaxis phosphatase, CheZ VI35_05980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VI35_05980 PF02895 Signal transducing histidine kinase, homodimeric domain VI35_05980 PF07194 P2 response regulator binding domain VI35_05980 PF01584 CheW-like domain VI35_05980 PF01627 Hpt domain VI35_05985 PF01339 CheB methylesterase VI35_05985 PF00072 Response regulator receiver domain VI35_05990 PF01618 MotA/TolQ/ExbB proton channel family VI35_05995 PF13677 Membrane MotB of proton-channel complex MotA/MotB VI35_05995 PF00691 OmpA family VI35_06000 PF13614 AAA domain VI35_06010 PF01584 CheW-like domain VI35_06030 PF01578 Cytochrome C assembly protein VI35_06035 PF04995 Heme exporter protein D (CcmD) VI35_06040 PF03100 CcmE VI35_06055 PF03918 Cytochrome C biogenesis protein VI35_06075 PF04333 MlaA lipoprotein VI35_06080 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VI35_06080 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VI35_06085 PF00462 Glutaredoxin VI35_06090 PF01189 16S rRNA methyltransferase RsmB/F VI35_06090 PF01029 NusB family VI35_06105 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region VI35_06105 PF01243 Pyridoxamine 5'-phosphate oxidase VI35_06115 PF01546 Peptidase family M20/M25/M40 VI35_06135 PF13508 Acetyltransferase (GNAT) domain VI35_06150 PF01081 KDPG and KHG aldolase VI35_06155 PF00294 pfkB family carbohydrate kinase VI35_06160 PF10688 Bacterial inner membrane protein VI35_06170 PF08125 Mannitol dehydrogenase C-terminal domain VI35_06170 PF01232 Mannitol dehydrogenase Rossmann domain VI35_06175 PF02614 Glucuronate isomerase VI35_06180 PF03480 Bacterial extracellular solute-binding protein, family 7 VI35_06190 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VI35_06195 PF07729 FCD domain VI35_06195 PF00392 Bacterial regulatory proteins, gntR family VI35_06205 PF01668 SmpB protein VI35_06210 PF03364 Polyketide cyclase / dehydrase and lipid transport VI35_06220 PF13460 NAD(P)H-binding VI35_06225 PF04355 SmpA / OmlA family VI35_06230 PF00465 Iron-containing alcohol dehydrogenase VI35_06235 PF01048 Phosphorylase superfamily VI35_06240 PF00849 RNA pseudouridylate synthase VI35_06245 PF01156 Inosine-uridine preferring nucleoside hydrolase VI35_06260 PF07509 Protein of unknown function (DUF1523) VI35_06265 PF00672 HAMP domain VI35_06265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VI35_06270 PF01810 LysE type translocator VI35_06290 PF02557 D-alanyl-D-alanine carboxypeptidase VI35_06295 PF07687 Peptidase dimerisation domain VI35_06295 PF01546 Peptidase family M20/M25/M40 VI35_06300 PF03960 ArsC family VI35_06320 PF03606 C4-dicarboxylate anaerobic carrier VI35_06325 PF01546 Peptidase family M20/M25/M40 VI35_06325 PF07687 Peptidase dimerisation domain VI35_06335 PF03605 Anaerobic c4-dicarboxylate membrane transporter VI35_06340 PF01336 OB-fold nucleic acid binding domain VI35_06340 PF00152 tRNA synthetases class II (D, K and N) VI35_06360 PF06968 Biotin and Thiamin Synthesis associated domain VI35_06360 PF04055 Radical SAM superfamily VI35_06370 PF08241 Methyltransferase domain VI35_06370 PF12697 Alpha/beta hydrolase family VI35_06380 PF01435 Peptidase family M48 VI35_06400 PF04325 Protein of unknown function (DUF465) VI35_06410 PF01554 MatE VI35_06435 PF00465 Iron-containing alcohol dehydrogenase VI35_06445 PF00440 Bacterial regulatory proteins, tetR family VI35_06445 PF08359 YsiA-like protein, C-terminal region VI35_06460 PF00877 NlpC/P60 family VI35_06465 PF03466 LysR substrate binding domain VI35_06465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_06485 PF08003 Protein of unknown function (DUF1698) VI35_06490 PF13649 Methyltransferase domain VI35_06495 PF01904 Protein of unknown function DUF72 VI35_06505 PF02938 GAD domain VI35_06505 PF00152 tRNA synthetases class II (D, K and N) VI35_06505 PF01336 OB-fold nucleic acid binding domain VI35_06510 PF01709 Transcriptional regulator VI35_06515 PF08019 Phosphoethanolamine transferase EptA/EptB VI35_06515 PF00884 Sulfatase VI35_06520 PF01047 MarR family VI35_06520 PF00480 ROK family VI35_06525 PF01979 Amidohydrolase family VI35_06530 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VI35_06535 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VI35_06535 PF02378 Phosphotransferase system, EIIC VI35_06535 PF00367 phosphotransferase system, EIIB VI35_06540 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VI35_06540 PF03173 Putative carbohydrate binding domain VI35_06540 PF02838 Glycosyl hydrolase family 20, domain 2 VI35_06540 PF00728 Glycosyl hydrolase family 20, catalytic domain VI35_06545 PF00749 tRNA synthetases class I (E and Q), catalytic domain VI35_06545 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VI35_06550 PF01475 Ferric uptake regulator family VI35_06560 PF00258 Flavodoxin VI35_06565 PF01402 Ribbon-helix-helix protein, copG family VI35_06580 PF17206 SeqA protein N-terminal domain VI35_06580 PF03925 SeqA protein C-terminal domain VI35_06585 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VI35_06585 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VI35_06585 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VI35_06585 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VI35_06595 PF01047 MarR family VI35_06600 PF13406 Transglycosylase SLT domain VI35_06605 PF01066 CDP-alcohol phosphatidyltransferase VI35_06630 PF02627 Carboxymuconolactone decarboxylase family VI35_06675 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VI35_06690 PF00356 Bacterial regulatory proteins, lacI family VI35_06700 PF03061 Thioesterase superfamily VI35_06715 PF01464 Transglycosylase SLT domain VI35_06715 PF01476 LysM domain VI35_06720 PF00753 Metallo-beta-lactamase superfamily VI35_06720 PF16123 Hydroxyacylglutathione hydrolase C-terminus VI35_06725 PF08241 Methyltransferase domain VI35_06730 PF00075 RNase H VI35_06735 PF00929 Exonuclease VI35_06745 PF11849 Domain of unknown function (DUF3369) VI35_06750 PF09317 Domain of unknown function (DUF1974) VI35_06750 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VI35_06750 PF02770 Acyl-CoA dehydrogenase, middle domain VI35_06750 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VI35_06755 PF13580 SIS domain VI35_06760 PF13230 Glutamine amidotransferases class-II VI35_06770 PF01933 Uncharacterised protein family UPF0052 VI35_06780 PF09456 RcsC Alpha-Beta-Loop (ABL) VI35_06780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VI35_06780 PF00512 His Kinase A (phospho-acceptor) domain VI35_06780 PF00072 Response regulator receiver domain VI35_06795 PF00196 Bacterial regulatory proteins, luxR family VI35_06795 PF00072 Response regulator receiver domain VI35_06800 PF07730 Histidine kinase VI35_06800 PF00672 HAMP domain VI35_06800 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term VI35_06800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VI35_06810 PF13187 4Fe-4S dicluster domain VI35_06810 PF12800 4Fe-4S binding domain VI35_06810 PF00037 4Fe-4S binding domain VI35_06820 PF10518 TAT (twin-arginine translocation) pathway signal sequence VI35_06820 PF01568 Molydopterin dinucleotide binding domain VI35_06820 PF00384 Molybdopterin oxidoreductase VI35_06820 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VI35_06825 PF12838 4Fe-4S dicluster domain VI35_06825 PF12800 4Fe-4S binding domain VI35_06835 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) VI35_06840 PF03264 NapC/NirT cytochrome c family, N-terminal region VI35_06845 PF00994 Probable molybdopterin binding domain VI35_06850 PF01967 MoaC family VI35_06855 PF02597 ThiS family VI35_06860 PF02391 MoaE protein VI35_06870 PF00528 Binding-protein-dependent transport system inner membrane component VI35_06880 PF12697 Alpha/beta hydrolase family VI35_06885 PF06406 StbA protein VI35_06895 PF00899 ThiF family VI35_06905 PF01227 GTP cyclohydrolase I VI35_06910 PF17200 Single Cache domain 2 VI35_06910 PF00672 HAMP domain VI35_06910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VI35_06915 PF01268 Formate--tetrahydrofolate ligase VI35_06925 PF03466 LysR substrate binding domain VI35_06925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_06930 PF04264 YceI-like domain VI35_06955 PF07687 Peptidase dimerisation domain VI35_06955 PF01546 Peptidase family M20/M25/M40 VI35_06965 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VI35_06965 PF17944 Arginine decarboxylase C-terminal helical extension VI35_06965 PF17810 Arginine decarboxylase helical bundle domain VI35_06980 PF03707 Bacterial signalling protein N terminal repeat VI35_06980 PF00990 Diguanylate cyclase, GGDEF domain VI35_06980 PF00563 EAL domain VI35_06985 PF00300 Histidine phosphatase superfamily (branch 1) VI35_06990 PF00145 C-5 cytosine-specific DNA methylase VI35_06995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VI35_06995 PF00512 His Kinase A (phospho-acceptor) domain VI35_07015 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain VI35_07015 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase VI35_07035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_07035 PF03466 LysR substrate binding domain VI35_07065 PF00155 Aminotransferase class I and II VI35_07065 PF00392 Bacterial regulatory proteins, gntR family VI35_07070 PF01654 Cytochrome bd terminal oxidase subunit I VI35_07075 PF02322 Cytochrome bd terminal oxidase subunit II VI35_07085 PF07690 Major Facilitator Superfamily VI35_07090 PF00248 Aldo/keto reductase family VI35_07110 PF03466 LysR substrate binding domain VI35_07110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_07115 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VI35_07115 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VI35_07120 PF00230 Major intrinsic protein VI35_07125 PF07690 Major Facilitator Superfamily VI35_07130 PF00455 DeoR C terminal sensor domain VI35_07130 PF08220 DeoR-like helix-turn-helix domain VI35_07145 PF03009 Glycerophosphoryl diester phosphodiesterase family VI35_07150 PF00793 DAHP synthetase I family VI35_07155 PF02153 Prephenate dehydrogenase VI35_07155 PF01817 Chorismate mutase type II VI35_07160 PF03466 LysR substrate binding domain VI35_07160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_07165 PF04219 Protein of unknown function, DUF VI35_07170 PF03974 Ecotin VI35_07195 PF00593 TonB dependent receptor VI35_07195 PF07715 TonB-dependent Receptor Plug Domain VI35_07200 PF11893 Domain of unknown function (DUF3413) VI35_07200 PF00884 Sulfatase VI35_07205 PF07208 Protein of unknown function (DUF1414) VI35_07215 PF01547 Bacterial extracellular solute-binding protein VI35_07220 PF00528 Binding-protein-dependent transport system inner membrane component VI35_07220 PF14785 Maltose transport system permease protein MalF P2 domain VI35_07225 PF00528 Binding-protein-dependent transport system inner membrane component VI35_07235 PF03976 Polyphosphate kinase 2 (PPK2) VI35_07240 PF00561 alpha/beta hydrolase fold VI35_07250 PF01594 AI-2E family transporter VI35_07255 PF01206 Sulfurtransferase TusA VI35_07260 PF13181 Tetratricopeptide repeat VI35_07260 PF01435 Peptidase family M48 VI35_07265 PF00578 AhpC/TSA family VI35_07270 PF03960 ArsC family VI35_07285 PF04336 Acyl carrier protein phosphodiesterase VI35_07295 PF00497 Bacterial extracellular solute-binding proteins, family 3 VI35_07310 PF00005 ABC transporter VI35_07315 PF00497 Bacterial extracellular solute-binding proteins, family 3 VI35_07320 PF00528 Binding-protein-dependent transport system inner membrane component VI35_07325 PF00528 Binding-protein-dependent transport system inner membrane component VI35_07335 PF04055 Radical SAM superfamily VI35_07340 PF03707 Bacterial signalling protein N terminal repeat VI35_07340 PF00990 Diguanylate cyclase, GGDEF domain VI35_07340 PF00563 EAL domain VI35_07360 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VI35_07360 PF00529 HlyD membrane-fusion protein of T1SS VI35_07365 PF02321 Outer membrane efflux protein VI35_07370 PF01594 AI-2E family transporter VI35_07380 PF06832 Penicillin-Binding Protein C-terminus Family VI35_07380 PF00912 Transglycosylase VI35_07380 PF00905 Penicillin binding protein transpeptidase domain VI35_07390 PF02568 Thiamine biosynthesis protein (ThiI) VI35_07390 PF02926 THUMP domain VI35_07405 PF00700 Bacterial flagellin C-terminal helical region VI35_07405 PF00669 Bacterial flagellin N-terminal helical region VI35_07405 PF07196 Flagellin hook IN motif VI35_07410 PF00700 Bacterial flagellin C-terminal helical region VI35_07410 PF07196 Flagellin hook IN motif VI35_07410 PF00669 Bacterial flagellin N-terminal helical region VI35_07420 PF07196 Flagellin hook IN motif VI35_07420 PF02465 Flagellar hook-associated protein 2 N-terminus VI35_07420 PF07195 Flagellar hook-associated protein 2 C-terminus VI35_07425 PF02561 Flagellar protein FliS VI35_07445 PF03102 NeuB family VI35_07445 PF08666 SAF domain VI35_07465 PF02348 Cytidylyltransferase VI35_07475 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VI35_07480 PF02719 Polysaccharide biosynthesis protein VI35_07485 PF01497 Periplasmic binding protein VI35_07495 PF01048 Phosphorylase superfamily VI35_07505 PF02535 ZIP Zinc transporter VI35_07510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VI35_07510 PF00672 HAMP domain VI35_07510 PF12729 Four helix bundle sensory module for signal transduction VI35_07520 PF00633 Helix-hairpin-helix motif VI35_07520 PF10576 Iron-sulfur binding domain of endonuclease III VI35_07520 PF00730 HhH-GPD superfamily base excision DNA repair protein VI35_07530 PF04205 FMN-binding domain VI35_07535 PF03116 NQR2, RnfD, RnfE family VI35_07545 PF04060 Putative Fe-S cluster VI35_07550 PF02508 Rnf-Nqr subunit, membrane protein VI35_07555 PF00892 EamA-like transporter family VI35_07565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VI35_07565 PF08447 PAS fold VI35_07565 PF13426 PAS domain VI35_07580 PF03606 C4-dicarboxylate anaerobic carrier VI35_07585 PF00155 Aminotransferase class I and II VI35_07595 PF00462 Glutaredoxin VI35_07600 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VI35_07610 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VI35_07610 PF00529 HlyD membrane-fusion protein of T1SS VI35_07615 PF11742 Protein of unknown function (DUF3302) VI35_07625 PF02554 Carbon starvation protein CstA VI35_07630 PF00072 Response regulator receiver domain VI35_07630 PF04397 LytTr DNA-binding domain VI35_07635 PF06580 Histidine kinase VI35_07635 PF07694 5TMR of 5TMR-LYT VI35_07650 PF01914 MarC family integral membrane protein VI35_07655 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VI35_07660 PF00528 Binding-protein-dependent transport system inner membrane component VI35_07665 PF12911 N-terminal TM domain of oligopeptide transport permease C VI35_07665 PF00528 Binding-protein-dependent transport system inner membrane component VI35_07670 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VI35_07670 PF00005 ABC transporter VI35_07675 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VI35_07675 PF00005 ABC transporter VI35_07680 PF03741 Integral membrane protein TerC family VI35_07685 PF00842 Alanine racemase, C-terminal domain VI35_07685 PF01168 Alanine racemase, N-terminal domain VI35_07695 PF00375 Sodium:dicarboxylate symporter family VI35_07710 PF01979 Amidohydrolase family VI35_07715 PF00589 Phage integrase family VI35_07715 PF12167 Arm DNA-binding domain VI35_07765 PF06630 Enterobacterial exodeoxyribonuclease VIII VI35_07765 PF12684 PDDEXK-like domain of unknown function (DUF3799) VI35_07785 PF01381 Helix-turn-helix VI35_07850 PF01844 HNH endonuclease VI35_08025 PF01230 HIT domain VI35_08065 PF02355 Protein export membrane protein VI35_08065 PF07549 SecD/SecF GG Motif VI35_08070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VI35_08070 PF08447 PAS fold VI35_08070 PF13426 PAS domain VI35_08090 PF08439 Oligopeptidase F VI35_08090 PF01432 Peptidase family M3 VI35_08095 PF05728 Uncharacterised protein family (UPF0227) VI35_08100 PF07992 Pyridine nucleotide-disulphide oxidoreductase VI35_08105 PF01906 Putative heavy-metal-binding VI35_08110 PF02016 LD-carboxypeptidase N-terminal domain VI35_08110 PF17676 LD-carboxypeptidase C-terminal domain VI35_08125 PF01842 ACT domain VI35_08125 PF00696 Amino acid kinase family VI35_08130 PF00583 Acetyltransferase (GNAT) family VI35_08130 PF00696 Amino acid kinase family VI35_08135 PF01625 Peptide methionine sulfoxide reductase VI35_08170 PF02754 Cysteine-rich domain VI35_08175 PF11870 Domain of unknown function (DUF3390) VI35_08175 PF02589 LUD domain VI35_08175 PF13183 4Fe-4S dicluster domain VI35_08180 PF02589 LUD domain VI35_08185 PF02913 FAD linked oxidases, C-terminal domain VI35_08185 PF01565 FAD binding domain VI35_08210 PF00005 ABC transporter VI35_08220 PF03600 Citrate transporter VI35_08250 PF01593 Flavin containing amine oxidoreductase VI35_08255 PF03239 Iron permease FTR1 family VI35_08285 PF04168 A predicted alpha-helical domain with a conserved ER motif. VI35_08285 PF14403 Circularly permuted ATP-grasp type 2 VI35_08325 PF05638 Type VI secretion system effector, Hcp VI35_08330 PF04717 Type VI secretion system, phage-baseplate injector VI35_08340 PF03527 RHS protein VI35_08340 PF05593 RHS Repeat VI35_08355 PF03527 RHS protein VI35_08355 PF05593 RHS Repeat VI35_08485 PF04717 Type VI secretion system, phage-baseplate injector VI35_08500 PF13737 Transposase DDE domain VI35_08515 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal VI35_08515 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit VI35_08520 PF13247 4Fe-4S dicluster domain VI35_08525 PF03916 Polysulphide reductase, NrfD VI35_08535 PF01750 Hydrogenase maturation protease VI35_08540 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE VI35_08545 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VI35_08550 PF00528 Binding-protein-dependent transport system inner membrane component VI35_08560 PF00005 ABC transporter VI35_08565 PF00005 ABC transporter VI35_08580 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA VI35_08590 PF01924 Hydrogenase formation hypA family VI35_08595 PF01455 HupF/HypC family VI35_08600 PF17788 HypF Kae1-like domain VI35_08600 PF01300 Telomere recombination VI35_08600 PF00708 Acylphosphatase VI35_08600 PF07503 HypF finger VI35_08605 PF13662 Toprim domain VI35_08605 PF02132 RecR protein VI35_08615 PF00183 Hsp90 protein VI35_08615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VI35_08620 PF05191 Adenylate kinase, active site lid VI35_08625 PF00762 Ferrochelatase VI35_08630 PF01124 MAPEG family VI35_08640 PF00672 HAMP domain VI35_08640 PF17200 Single Cache domain 2 VI35_08640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VI35_08660 PF00483 Nucleotidyl transferase VI35_08670 PF07273 Protein of unknown function (DUF1439) VI35_08675 PF00425 chorismate binding enzyme VI35_08680 PF00501 AMP-binding enzyme VI35_08680 PF13193 AMP-binding enzyme C-terminal domain VI35_08685 PF00857 Isochorismatase family VI35_08685 PF00550 Phosphopantetheine attachment site VI35_08705 PF00668 Condensation domain VI35_08705 PF00975 Thioesterase domain VI35_08705 PF00550 Phosphopantetheine attachment site VI35_08705 PF13193 AMP-binding enzyme C-terminal domain VI35_08705 PF00501 AMP-binding enzyme VI35_08710 PF01497 Periplasmic binding protein VI35_08715 PF01648 4'-phosphopantetheinyl transferase superfamily VI35_08715 PF17837 4'-phosphopantetheinyl transferase N-terminal domain VI35_08720 PF00005 ABC transporter VI35_08725 PF01032 FecCD transport family VI35_08730 PF01032 FecCD transport family VI35_08735 PF00593 TonB dependent receptor VI35_08735 PF07715 TonB-dependent Receptor Plug Domain VI35_08750 PF11143 Protein of unknown function (DUF2919) VI35_08765 PF01012 Electron transfer flavoprotein domain VI35_08780 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VI35_08790 PF03741 Integral membrane protein TerC family VI35_08800 PF08891 YfcL protein VI35_08805 PF00501 AMP-binding enzyme VI35_08810 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VI35_08810 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VI35_08815 PF04172 LrgB-like family VI35_08820 PF03788 LrgA family VI35_08835 PF00929 Exonuclease VI35_08835 PF08411 Exonuclease C-terminal VI35_08840 PF13356 Arm DNA-binding domain VI35_08840 PF00589 Phage integrase family VI35_08840 PF14659 Phage integrase, N-terminal SAM-like domain VI35_08945 PF11799 impB/mucB/samB family C-terminal domain VI35_08945 PF11798 IMS family HHH motif VI35_08945 PF13438 Domain of unknown function (DUF4113) VI35_08945 PF00817 impB/mucB/samB family VI35_08950 PF00717 Peptidase S24-like VI35_08955 PF02586 SOS response associated peptidase (SRAP) VI35_08985 PF07471 Phage DNA packaging protein Nu1 VI35_08990 PF02413 Caudovirales tail fibre assembly protein, lambda gpK VI35_09005 PF00574 Clp protease VI35_09105 PF13737 Transposase DDE domain VI35_09115 PF00248 Aldo/keto reductase family VI35_09125 PF00106 short chain dehydrogenase VI35_09130 PF00106 short chain dehydrogenase VI35_09135 PF02801 Beta-ketoacyl synthase, C-terminal domain VI35_09135 PF00109 Beta-ketoacyl synthase, N-terminal domain VI35_09135 PF16197 Ketoacyl-synthetase C-terminal extension VI35_09135 PF08240 Alcohol dehydrogenase GroES-like domain VI35_09135 PF00550 Phosphopantetheine attachment site VI35_09135 PF14765 Polyketide synthase dehydratase VI35_09135 PF08659 KR domain VI35_09135 PF00698 Acyl transferase domain VI35_09140 PF00529 HlyD membrane-fusion protein of T1SS VI35_09140 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VI35_09145 PF00873 AcrB/AcrD/AcrF family VI35_09150 PF02321 Outer membrane efflux protein VI35_09160 PF02801 Beta-ketoacyl synthase, C-terminal domain VI35_09160 PF00109 Beta-ketoacyl synthase, N-terminal domain VI35_09170 PF00873 AcrB/AcrD/AcrF family VI35_09200 PF10509 Galactokinase galactose-binding signature VI35_09200 PF08544 GHMP kinases C terminal VI35_09200 PF00288 GHMP kinases N terminal domain VI35_09205 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VI35_09205 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VI35_09220 PF02264 LamB porin VI35_09225 PF07745 Glycosyl hydrolase family 53 VI35_09235 PF02743 Cache domain VI35_09235 PF00672 HAMP domain VI35_09235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VI35_09240 PF00005 ABC transporter VI35_09240 PF17912 MalK OB fold domain VI35_09245 PF13416 Bacterial extracellular solute-binding protein VI35_09250 PF00528 Binding-protein-dependent transport system inner membrane component VI35_09255 PF00528 Binding-protein-dependent transport system inner membrane component VI35_09260 PF07745 Glycosyl hydrolase family 53 VI35_09265 PF08533 Beta-galactosidase C-terminal domain VI35_09265 PF02449 Beta-galactosidase VI35_09265 PF08532 Beta-galactosidase trimerisation domain VI35_09270 PF00367 phosphotransferase system, EIIB VI35_09270 PF02378 Phosphotransferase system, EIIC VI35_09280 PF07745 Glycosyl hydrolase family 53 VI35_09285 PF02887 Pyruvate kinase, alpha/beta domain VI35_09285 PF00224 Pyruvate kinase, barrel domain VI35_09300 PF00149 Calcineurin-like phosphoesterase VI35_09315 PF00497 Bacterial extracellular solute-binding proteins, family 3 VI35_09320 PF00795 Carbon-nitrogen hydrolase VI35_09325 PF00155 Aminotransferase class I and II VI35_09340 PF00596 Class II Aldolase and Adducin N-terminal domain VI35_09345 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VI35_09350 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VI35_09355 PF00005 ABC transporter VI35_09360 PF02653 Branched-chain amino acid transport system / permease component VI35_09365 PF02311 AraC-like ligand binding domain VI35_09365 PF12833 Helix-turn-helix domain VI35_09370 PF00444 Ribosomal protein L36 VI35_09390 PF01863 Protein of unknown function DUF45 VI35_09405 PF03606 C4-dicarboxylate anaerobic carrier VI35_09415 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VI35_09415 PF01266 FAD dependent oxidoreductase VI35_09420 PF02801 Beta-ketoacyl synthase, C-terminal domain VI35_09420 PF00109 Beta-ketoacyl synthase, N-terminal domain VI35_09435 PF00285 Citrate synthase, C-terminal domain VI35_09440 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VI35_09445 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VI35_09450 PF02910 Fumarate reductase flavoprotein C-term VI35_09450 PF00890 FAD binding domain VI35_09460 PF02779 Transketolase, pyrimidine binding domain VI35_09460 PF00676 Dehydrogenase E1 component VI35_09460 PF16078 2-oxoglutarate dehydrogenase N-terminus VI35_09460 PF16870 2-oxoglutarate dehydrogenase C-terminal VI35_09465 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VI35_09465 PF00364 Biotin-requiring enzyme VI35_09465 PF02817 e3 binding domain VI35_09475 PF00549 CoA-ligase VI35_09475 PF02629 CoA binding domain VI35_09490 PF03692 Putative zinc- or iron-chelating domain VI35_09495 PF01266 FAD dependent oxidoreductase VI35_09500 PF00528 Binding-protein-dependent transport system inner membrane component VI35_09505 PF00005 ABC transporter VI35_09515 PF07702 UTRA domain VI35_09515 PF00392 Bacterial regulatory proteins, gntR family VI35_09520 PF00266 Aminotransferase class-V VI35_09535 PF01228 Glycine radical VI35_09535 PF02901 Pyruvate formate lyase-like VI35_09540 PF01226 Formate/nitrite transporter VI35_09560 PF00893 Small Multidrug Resistance protein VI35_09565 PF02774 Semialdehyde dehydrogenase, dimerisation domain VI35_09565 PF01118 Semialdehyde dehydrogenase, NAD binding domain VI35_09570 PF00313 'Cold-shock' DNA-binding domain VI35_09575 PF02617 ATP-dependent Clp protease adaptor protein ClpS VI35_09580 PF17871 AAA lid domain VI35_09580 PF07724 AAA domain (Cdc48 subfamily) VI35_09580 PF02861 Clp amino terminal domain, pathogenicity island component VI35_09580 PF00004 ATPase family associated with various cellular activities (AAA) VI35_09580 PF10431 C-terminal, D2-small domain, of ClpB protein VI35_09585 PF01176 Translation initiation factor 1A / IF-1 VI35_09595 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VI35_09600 PF05433 Glycine zipper 2TM domain VI35_09605 PF00990 Diguanylate cyclase, GGDEF domain VI35_09605 PF05230 MASE2 domain VI35_09610 PF07992 Pyridine nucleotide-disulphide oxidoreductase VI35_09615 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VI35_09615 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VI35_09620 PF01037 Lrp/AsnC ligand binding domain VI35_09630 PF03548 Outer membrane lipoprotein carrier protein LolA VI35_09640 PF02403 Seryl-tRNA synthetase N-terminal domain VI35_09640 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VI35_09645 PF02674 Colicin V production protein VI35_09650 PF00156 Phosphoribosyl transferase domain VI35_09655 PF00232 Glycosyl hydrolase family 1 VI35_09660 PF00367 phosphotransferase system, EIIB VI35_09660 PF02378 Phosphotransferase system, EIIC VI35_09665 PF00356 Bacterial regulatory proteins, lacI family VI35_09670 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VI35_09675 PF00005 ABC transporter VI35_09680 PF00005 ABC transporter VI35_09680 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VI35_09685 PF00528 Binding-protein-dependent transport system inner membrane component VI35_09685 PF12911 N-terminal TM domain of oligopeptide transport permease C VI35_09695 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VI35_09705 PF04012 PspA/IM30 family VI35_09710 PF06667 Phage shock protein B VI35_09720 PF04317 YcjX-like family, DUF463 VI35_09725 PF05128 Domain of unknown function (DUF697) VI35_09730 PF00351 Biopterin-dependent aromatic amino acid hydroxylase VI35_09735 PF01329 Pterin 4 alpha carbinolamine dehydratase VI35_09740 PF00158 Sigma-54 interaction domain VI35_09740 PF18024 Helix-turn-helix domain VI35_09745 PF13689 YfiR/HmsC-like VI35_09750 PF00990 Diguanylate cyclase, GGDEF domain VI35_09750 PF00563 EAL domain VI35_09750 PF03707 Bacterial signalling protein N terminal repeat VI35_09755 PF00691 OmpA family VI35_09760 PF04055 Radical SAM superfamily VI35_09765 PF13742 OB-fold nucleic acid binding domain VI35_09765 PF02601 Exonuclease VII, large subunit VI35_09775 PF03423 Carbohydrate binding domain (family 25) VI35_09775 PF01373 Glycosyl hydrolase family 14 VI35_09775 PF00128 Alpha amylase, catalytic domain VI35_09785 PF00571 CBS domain VI35_09785 PF00478 IMP dehydrogenase / GMP reductase domain VI35_09790 PF02540 NAD synthase VI35_09790 PF00958 GMP synthase C terminal domain VI35_09790 PF00117 Glutamine amidotransferase class-I VI35_09820 PF01047 MarR family VI35_09840 PF00300 Histidine phosphatase superfamily (branch 1) VI35_09850 PF00892 EamA-like transporter family VI35_09855 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VI35_09860 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain VI35_09865 PF00270 DEAD/DEAH box helicase VI35_09865 PF17757 UvrB interaction domain VI35_09865 PF00271 Helicase conserved C-terminal domain VI35_09865 PF02559 CarD-like/TRCF domain VI35_09865 PF03461 TRCF domain VI35_09875 PF12704 MacB-like periplasmic core domain VI35_09875 PF02687 FtsX-like permease family VI35_09880 PF00005 ABC transporter VI35_09885 PF12704 MacB-like periplasmic core domain VI35_09885 PF02687 FtsX-like permease family VI35_09905 PF05698 Bacterial trigger factor protein (TF) C-terminus VI35_09905 PF05697 Bacterial trigger factor protein (TF) VI35_09905 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VI35_09910 PF00574 Clp protease VI35_09915 PF06689 ClpX C4-type zinc finger VI35_09915 PF10431 C-terminal, D2-small domain, of ClpB protein VI35_09915 PF07724 AAA domain (Cdc48 subfamily) VI35_09920 PF00004 ATPase family associated with various cellular activities (AAA) VI35_09920 PF05362 Lon protease (S16) C-terminal proteolytic domain VI35_09920 PF02190 ATP-dependent protease La (LON) substrate-binding domain VI35_09925 PF00216 Bacterial DNA-binding protein VI35_09930 PF13145 PPIC-type PPIASE domain VI35_09935 PF00005 ABC transporter VI35_09935 PF12848 ABC transporter VI35_09940 PF00474 Sodium:solute symporter family VI35_09945 PF04341 Protein of unknown function, DUF485 VI35_09965 PF01235 Sodium:alanine symporter family VI35_09975 PF06167 Glucose-regulated metallo-peptidase M90 VI35_09980 PF01184 GPR1/FUN34/yaaH family VI35_09990 PF00376 MerR family regulatory protein VI35_09990 PF09278 MerR, DNA binding VI35_09995 PF00682 HMGL-like VI35_10005 PF00378 Enoyl-CoA hydratase/isomerase VI35_10015 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VI35_10015 PF02770 Acyl-CoA dehydrogenase, middle domain VI35_10015 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VI35_10020 PF00171 Aldehyde dehydrogenase family VI35_10025 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VI35_10025 PF02770 Acyl-CoA dehydrogenase, middle domain VI35_10025 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VI35_10035 PF00378 Enoyl-CoA hydratase/isomerase VI35_10040 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VI35_10040 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VI35_10050 PF13520 Amino acid permease VI35_10055 PF01925 Sulfite exporter TauE/SafE VI35_10065 PF12706 Beta-lactamase superfamily domain VI35_10070 PF02653 Branched-chain amino acid transport system / permease component VI35_10080 PF00005 ABC transporter VI35_10085 PF13407 Periplasmic binding protein domain VI35_10090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_10090 PF03466 LysR substrate binding domain VI35_10105 PF02634 FdhD/NarQ family VI35_10110 PF00384 Molybdopterin oxidoreductase VI35_10115 PF00990 Diguanylate cyclase, GGDEF domain VI35_10115 PF00072 Response regulator receiver domain VI35_10120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_10120 PF03466 LysR substrate binding domain VI35_10125 PF00232 Glycosyl hydrolase family 1 VI35_10135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_10135 PF03466 LysR substrate binding domain VI35_10145 PF00933 Glycosyl hydrolase family 3 N terminal domain VI35_10150 PF01261 Xylose isomerase-like TIM barrel VI35_10170 PF03279 Bacterial lipid A biosynthesis acyltransferase VI35_10175 PF03279 Bacterial lipid A biosynthesis acyltransferase VI35_10185 PF02678 Pirin VI35_10185 PF05726 Pirin C-terminal cupin domain VI35_10190 PF00136 DNA polymerase family B VI35_10190 PF03104 DNA polymerase family B, exonuclease domain VI35_10220 PF01554 MatE VI35_10225 PF06786 Uncharacterised protein family (UPF0253) VI35_10230 PF00677 Lumazine binding domain VI35_10245 PF13419 Haloacid dehalogenase-like hydrolase VI35_10255 PF00892 EamA-like transporter family VI35_10260 PF02525 Flavodoxin-like fold VI35_10295 PF04269 Protein of unknown function, DUF440 VI35_10310 PF04269 Protein of unknown function, DUF440 VI35_10320 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VI35_10330 PF05166 YcgL domain VI35_10335 PF13406 Transglycosylase SLT domain VI35_10340 PF03315 Serine dehydratase beta chain VI35_10340 PF03313 Serine dehydratase alpha chain VI35_10350 PF03315 Serine dehydratase beta chain VI35_10350 PF03313 Serine dehydratase alpha chain VI35_10355 PF06865 Pyrimidine/purine nucleoside phosphorylase VI35_10360 PF00375 Sodium:dicarboxylate symporter family VI35_10365 PF09278 MerR, DNA binding VI35_10365 PF00376 MerR family regulatory protein VI35_10370 PF00108 Thiolase, N-terminal domain VI35_10370 PF02803 Thiolase, C-terminal domain VI35_10375 PF08668 HDOD domain VI35_10375 PF00563 EAL domain VI35_10380 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VI35_10385 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VI35_10425 PF17863 AAA lid domain VI35_10425 PF07726 ATPase family associated with various cellular activities (AAA) VI35_10430 PF00108 Thiolase, N-terminal domain VI35_10430 PF02803 Thiolase, C-terminal domain VI35_10445 PF07152 YaeQ protein VI35_10465 PF00005 ABC transporter VI35_10470 PF01032 FecCD transport family VI35_10485 PF05433 Glycine zipper 2TM domain VI35_10495 PF00501 AMP-binding enzyme VI35_10495 PF13193 AMP-binding enzyme C-terminal domain VI35_10500 PF13280 WYL domain VI35_10500 PF08279 HTH domain VI35_10510 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VI35_10510 PF01502 Phosphoribosyl-AMP cyclohydrolase VI35_10530 PF00072 Response regulator receiver domain VI35_10535 PF00977 Histidine biosynthesis protein VI35_10540 PF00117 Glutamine amidotransferase class-I VI35_10545 PF08645 Polynucleotide kinase 3 phosphatase VI35_10545 PF00475 Imidazoleglycerol-phosphate dehydratase VI35_10550 PF00155 Aminotransferase class I and II VI35_10555 PF00815 Histidinol dehydrogenase VI35_10575 PF00814 Glycoprotease family VI35_10590 PF13193 AMP-binding enzyme C-terminal domain VI35_10590 PF00501 AMP-binding enzyme VI35_10595 PF01612 3'-5' exonuclease VI35_10595 PF00570 HRDC domain VI35_10605 PF00892 EamA-like transporter family VI35_10615 PF01207 Dihydrouridine synthase (Dus) VI35_10620 PF04304 Protein of unknown function (DUF454) VI35_10625 PF00156 Phosphoribosyl transferase domain VI35_10630 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding VI35_10630 PF12170 DNA polymerase III tau subunit V interacting with alpha VI35_10630 PF12169 DNA polymerase III subunits gamma and tau domain III VI35_10635 PF02575 YbaB/EbfC DNA-binding family VI35_10640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_10640 PF03466 LysR substrate binding domain VI35_10645 PF05726 Pirin C-terminal cupin domain VI35_10645 PF02678 Pirin VI35_10655 PF00196 Bacterial regulatory proteins, luxR family VI35_10655 PF00072 Response regulator receiver domain VI35_10665 PF04408 Helicase associated domain (HA2) VI35_10665 PF11898 Domain of unknown function (DUF3418) VI35_10665 PF00270 DEAD/DEAH box helicase VI35_10665 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VI35_10665 PF00271 Helicase conserved C-terminal domain VI35_10675 PF01386 Ribosomal L25p family VI35_10685 PF00072 Response regulator receiver domain VI35_10700 PF02769 AIR synthase related protein, C-terminal domain VI35_10700 PF00586 AIR synthase related protein, N-terminal domain VI35_10715 PF10672 S-adenosylmethionine-dependent methyltransferase VI35_10715 PF17785 PUA-like domain VI35_10720 PF12729 Four helix bundle sensory module for signal transduction VI35_10720 PF00672 HAMP domain VI35_10720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VI35_10725 PF00708 Acylphosphatase VI35_10735 PF01588 Putative tRNA binding domain VI35_10735 PF08264 Anticodon-binding domain of tRNA VI35_10735 PF09334 tRNA synthetases class I (M) VI35_10740 PF10609 NUBPL iron-transfer P-loop NTPase VI35_10745 PF00485 Phosphoribulokinase / Uridine kinase family VI35_10750 PF00692 dUTPase VI35_10760 PF00575 S1 RNA binding domain VI35_10760 PF10150 Ribonuclease E/G family VI35_10760 PF12111 Polyribonucleotide phosphorylase C terminal VI35_10765 PF00849 RNA pseudouridylate synthase VI35_10765 PF01479 S4 domain VI35_10770 PF02545 Maf-like protein VI35_10780 PF02620 Large ribosomal RNA subunit accumulation protein YceD VI35_10785 PF01783 Ribosomal L32p protein family VI35_10790 PF02504 Fatty acid synthesis protein VI35_10795 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VI35_10795 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VI35_10800 PF00698 Acyl transferase domain VI35_10810 PF00550 Phosphopantetheine attachment site VI35_10820 PF01063 Amino-transferase class IV VI35_10825 PF02618 YceG-like family VI35_10830 PF02223 Thymidylate kinase VI35_10835 PF09115 DNA polymerase III, delta subunit, C terminal VI35_10840 PF01026 TatD related DNase VI35_10845 PF00589 Phage integrase family VI35_10855 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF VI35_10855 PF01189 16S rRNA methyltransferase RsmB/F VI35_10855 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF VI35_10865 PF04403 Paraquat-inducible protein A VI35_10885 PF05362 Lon protease (S16) C-terminal proteolytic domain VI35_10885 PF13654 AAA domain VI35_10890 PF07977 FabA-like domain VI35_10895 PF04957 Ribosome modulation factor VI35_10905 PF12848 ABC transporter VI35_10905 PF16326 ABC transporter C-terminal domain VI35_10905 PF00005 ABC transporter VI35_10915 PF10672 S-adenosylmethionine-dependent methyltransferase VI35_10915 PF02926 THUMP domain VI35_10915 PF01170 Putative RNA methylase family UPF0020 VI35_10920 PF07126 Cell-division protein ZapC VI35_10925 PF01180 Dihydroorotate dehydrogenase VI35_10930 PF05088 Bacterial NAD-glutamate dehydrogenase VI35_10940 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VI35_10940 PF11940 Domain of unknown function (DUF3458) Ig-like fold VI35_10940 PF01433 Peptidase family M1 domain VI35_10945 PF17804 Tail specific protease N-terminal domain VI35_10945 PF03572 Peptidase family S41 VI35_10945 PF00595 PDZ domain VI35_10945 PF11818 C-terminal domain of tail specific protease (DUF3340) VI35_10950 PF17516 ProQ C-terminal domain VI35_10950 PF04352 ProQ/FINO family VI35_10955 PF13185 GAF domain VI35_10965 PF00115 Cytochrome C and Quinol oxidase polypeptide I VI35_10980 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VI35_10980 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VI35_11005 PF13545 Crp-like helix-turn-helix domain VI35_11005 PF00027 Cyclic nucleotide-binding domain VI35_11010 PF00582 Universal stress protein family VI35_11015 PF01171 PP-loop family VI35_11030 PF14497 Glutathione S-transferase, C-terminal domain VI35_11030 PF02798 Glutathione S-transferase, N-terminal domain VI35_11035 PF05025 RbsD / FucU transport protein family VI35_11040 PF00005 ABC transporter VI35_11045 PF02653 Branched-chain amino acid transport system / permease component VI35_11050 PF13407 Periplasmic binding protein domain VI35_11055 PF00294 pfkB family carbohydrate kinase VI35_11060 PF00356 Bacterial regulatory proteins, lacI family VI35_11065 PF03707 Bacterial signalling protein N terminal repeat VI35_11065 PF00563 EAL domain VI35_11065 PF00990 Diguanylate cyclase, GGDEF domain VI35_11075 PF02146 Sir2 family VI35_11090 PF00512 His Kinase A (phospho-acceptor) domain VI35_11090 PF09456 RcsC Alpha-Beta-Loop (ABL) VI35_11090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VI35_11090 PF00072 Response regulator receiver domain VI35_11100 PF03147 Ferredoxin-fold anticodon binding domain VI35_11100 PF03484 tRNA synthetase B5 domain VI35_11100 PF03483 B3/4 domain VI35_11100 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain VI35_11100 PF01588 Putative tRNA binding domain VI35_11105 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VI35_11105 PF01409 tRNA synthetases class II core domain (F) VI35_11110 PF00453 Ribosomal protein L20 VI35_11115 PF01632 Ribosomal protein L35 VI35_11120 PF00707 Translation initiation factor IF-3, C-terminal domain VI35_11120 PF05198 Translation initiation factor IF-3, N-terminal domain VI35_11125 PF02824 TGS domain VI35_11125 PF03129 Anticodon binding domain VI35_11125 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VI35_11125 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VI35_11140 PF04055 Radical SAM superfamily VI35_11145 PF03989 DNA gyrase C-terminal domain, beta-propeller VI35_11145 PF00521 DNA gyrase/topoisomerase IV, subunit A VI35_11155 PF13419 Haloacid dehalogenase-like hydrolase VI35_11160 PF00317 Ribonucleotide reductase, all-alpha domain VI35_11160 PF02867 Ribonucleotide reductase, barrel domain VI35_11160 PF03477 ATP cone domain VI35_11165 PF00268 Ribonucleotide reductase, small chain VI35_11175 PF03562 MltA specific insert domain VI35_11175 PF06725 3D domain VI35_11180 PF06945 Protein of unknown function (DUF1289) VI35_11185 PF02378 Phosphotransferase system, EIIC VI35_11185 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VI35_11190 PF00294 pfkB family carbohydrate kinase VI35_11200 PF00356 Bacterial regulatory proteins, lacI family VI35_11200 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VI35_11205 PF03222 Tryptophan/tyrosine permease family VI35_11220 PF00271 Helicase conserved C-terminal domain VI35_11220 PF00270 DEAD/DEAH box helicase VI35_11230 PF01264 Chorismate synthase VI35_11235 PF05175 Methyltransferase small domain VI35_11265 PF00704 Glycosyl hydrolases family 18 VI35_11265 PF08329 Chitinase A, N-terminal domain VI35_11275 PF03831 PhnA domain VI35_11275 PF08274 PhnA Zinc-Ribbon VI35_11285 PF01810 LysE type translocator VI35_11330 PF16330 MukB hinge domain VI35_11330 PF04310 MukB N-terminal VI35_11335 PF04288 MukE-like family VI35_11340 PF17193 MukF C-terminal domain VI35_11340 PF17192 MukF middle domain VI35_11340 PF03882 MukF winged-helix domain VI35_11350 PF02698 DUF218 domain VI35_11355 PF00121 Triosephosphate isomerase VI35_11360 PF00365 Phosphofructokinase VI35_11370 PF13419 Haloacid dehalogenase-like hydrolase VI35_11430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_11430 PF03466 LysR substrate binding domain VI35_11435 PF01925 Sulfite exporter TauE/SafE VI35_11445 PF01820 D-ala D-ala ligase N-terminus VI35_11445 PF07478 D-ala D-ala ligase C-terminus VI35_11455 PF00255 Glutathione peroxidase VI35_11460 PF00270 DEAD/DEAH box helicase VI35_11460 PF00271 Helicase conserved C-terminal domain VI35_11480 PF01928 CYTH domain VI35_11490 PF13673 Acetyltransferase (GNAT) domain VI35_11500 PF08543 Phosphomethylpyrimidine kinase VI35_11525 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus VI35_11525 PF00561 alpha/beta hydrolase fold VI35_11530 PF01575 MaoC like domain VI35_11595 PF00343 Carbohydrate phosphorylase VI35_11620 PF00293 NUDIX domain VI35_11625 PF03222 Tryptophan/tyrosine permease family VI35_11630 PF00375 Sodium:dicarboxylate symporter family VI35_11635 PF16124 RecQ zinc-binding VI35_11635 PF00570 HRDC domain VI35_11635 PF09382 RQC domain VI35_11635 PF00270 DEAD/DEAH box helicase VI35_11635 PF00271 Helicase conserved C-terminal domain VI35_11640 PF08298 PrkA AAA domain VI35_11640 PF06798 PrkA serine protein kinase C-terminal domain VI35_11645 PF04285 Protein of unknown function (DUF444) VI35_11650 PF04293 SpoVR like protein VI35_11655 PF07840 FadR C-terminal domain VI35_11655 PF00392 Bacterial regulatory proteins, gntR family VI35_11660 PF06450 Bacterial Na+/H+ antiporter B (NhaB) VI35_11665 PF02600 Disulfide bond formation protein DsbB VI35_11670 PF09335 SNARE associated Golgi protein VI35_11695 PF06826 Predicted Permease Membrane Region VI35_11695 PF02080 TrkA-C domain VI35_11700 PF01464 Transglycosylase SLT domain VI35_11700 PF10145 Phage-related minor tail protein VI35_11700 PF01551 Peptidase family M23 VI35_11705 PF03401 Tripartite tricarboxylate transporter family receptor VI35_11720 PF00072 Response regulator receiver domain VI35_11725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VI35_11725 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VI35_11725 PF17203 Single cache domain 3 VI35_11725 PF00989 PAS fold VI35_11735 PF00672 HAMP domain VI35_11735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VI35_11735 PF17200 Single Cache domain 2 VI35_11740 PF02810 SEC-C motif VI35_11745 PF04324 BFD-like [2Fe-2S] binding domain VI35_11745 PF01266 FAD dependent oxidoreductase VI35_11750 PF00890 FAD binding domain VI35_11755 PF13183 4Fe-4S dicluster domain VI35_11755 PF02754 Cysteine-rich domain VI35_11780 PF02335 Cytochrome c552 VI35_11785 PF13435 Cytochrome c554 and c-prime VI35_11785 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) VI35_11790 PF00037 4Fe-4S binding domain VI35_11790 PF13247 4Fe-4S dicluster domain VI35_11795 PF03916 Polysulphide reductase, NrfD VI35_11805 PF08534 Redoxin VI35_11815 PF00768 D-alanyl-D-alanine carboxypeptidase VI35_11825 PF04244 Deoxyribodipyrimidine photo-lyase-related protein VI35_11830 PF01266 FAD dependent oxidoreductase VI35_11840 PF07969 Amidohydrolase family VI35_11845 PF00571 CBS domain VI35_11845 PF00478 IMP dehydrogenase / GMP reductase domain VI35_11855 PF01717 Cobalamin-independent synthase, Catalytic domain VI35_11855 PF08267 Cobalamin-independent synthase, N-terminal domain VI35_11860 PF03466 LysR substrate binding domain VI35_11860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_11870 PF00593 TonB dependent receptor VI35_11870 PF07715 TonB-dependent Receptor Plug Domain VI35_11875 PF00990 Diguanylate cyclase, GGDEF domain VI35_11875 PF17158 Membrane-associated sensor, integral membrane domain VI35_11880 PF01590 GAF domain VI35_11880 PF00563 EAL domain VI35_11880 PF00360 Phytochrome region VI35_11880 PF00990 Diguanylate cyclase, GGDEF domain VI35_11885 PF00196 Bacterial regulatory proteins, luxR family VI35_11885 PF00563 EAL domain VI35_11900 PF13460 NAD(P)H-binding VI35_11935 PF00141 Peroxidase VI35_11955 PF02378 Phosphotransferase system, EIIC VI35_11955 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VI35_11955 PF00367 phosphotransferase system, EIIB VI35_11960 PF01418 Helix-turn-helix domain, rpiR family VI35_11960 PF01380 SIS domain VI35_11975 PF10722 Putative bacterial sensory transduction regulator VI35_11985 PF00265 Thymidine kinase VI35_11995 PF00816 H-NS histone family VI35_12000 PF01923 Cobalamin adenosyltransferase VI35_12005 PF12843 Putative quorum-sensing-regulated virulence factor VI35_12010 PF04055 Radical SAM superfamily VI35_12015 PF06508 Queuosine biosynthesis protein QueC VI35_12030 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VI35_12035 PF18073 Rubredoxin metal binding domain VI35_12045 PF00216 Bacterial DNA-binding protein VI35_12050 PF00575 S1 RNA binding domain VI35_12055 PF02224 Cytidylate kinase VI35_12060 PF00925 GTP cyclohydrolase II VI35_12065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_12065 PF03466 LysR substrate binding domain VI35_12070 PF07690 Major Facilitator Superfamily VI35_12085 PF00881 Nitroreductase family VI35_12090 PF03806 AbgT putative transporter family VI35_12095 PF00990 Diguanylate cyclase, GGDEF domain VI35_12095 PF00563 EAL domain VI35_12095 PF03707 Bacterial signalling protein N terminal repeat VI35_12095 PF13188 PAS domain VI35_12105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_12105 PF03466 LysR substrate binding domain VI35_12110 PF00072 Response regulator receiver domain VI35_12110 PF00486 Transcriptional regulatory protein, C terminal VI35_12120 PF01212 Beta-eliminating lyase VI35_12135 PF00248 Aldo/keto reductase family VI35_12140 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) VI35_12150 PF03411 Penicillin-insensitive murein endopeptidase VI35_12175 PF01618 MotA/TolQ/ExbB proton channel family VI35_12180 PF13677 Membrane MotB of proton-channel complex MotA/MotB VI35_12180 PF00691 OmpA family VI35_12185 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 VI35_12190 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit VI35_12195 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit VI35_12195 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit VI35_12205 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region VI35_12205 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VI35_12215 PF00146 NADH dehydrogenase VI35_12220 PF12838 4Fe-4S dicluster domain VI35_12225 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 VI35_12230 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L VI35_12240 PF00361 Proton-conducting membrane transporter VI35_12245 PF00361 Proton-conducting membrane transporter VI35_12255 PF00497 Bacterial extracellular solute-binding proteins, family 3 VI35_12255 PF01464 Transglycosylase SLT domain VI35_12265 PF07191 zinc-ribbons VI35_12270 PF01926 50S ribosome-binding GTPase VI35_12270 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VI35_12275 PF13360 PQQ-like domain VI35_12280 PF09976 Tetratricopeptide repeat-like domain VI35_12285 PF03129 Anticodon binding domain VI35_12285 PF13393 Histidyl-tRNA synthetase VI35_12290 PF04551 GcpE protein VI35_12295 PF13464 Domain of unknown function (DUF4115) VI35_12305 PF04055 Radical SAM superfamily VI35_12310 PF00334 Nucleoside diphosphate kinase VI35_12315 PF00883 Cytosol aminopeptidase family, catalytic domain VI35_12315 PF12404 Peptidase VI35_12320 PF00883 Cytosol aminopeptidase family, catalytic domain VI35_12320 PF12404 Peptidase VI35_12325 PF00111 2Fe-2S iron-sulfur cluster binding domain VI35_12330 PF00012 Hsp70 protein VI35_12335 PF07743 HSCB C-terminal oligomerisation domain VI35_12335 PF00226 DnaJ domain VI35_12340 PF01521 Iron-sulphur cluster biosynthesis VI35_12345 PF01592 NifU-like N terminal domain VI35_12350 PF00266 Aminotransferase class-V VI35_12355 PF02082 Transcriptional regulator VI35_12360 PF00588 SpoU rRNA Methylase family VI35_12380 PF07719 Tetratricopeptide repeat VI35_12380 PF13181 Tetratricopeptide repeat VI35_12385 PF00581 Rhodanese-like domain VI35_12390 PF07549 SecD/SecF GG Motif VI35_12390 PF02355 Protein export membrane protein VI35_12395 PF02355 Protein export membrane protein VI35_12395 PF13721 SecD export protein N-terminal TM region VI35_12395 PF07549 SecD/SecF GG Motif VI35_12400 PF02699 Preprotein translocase subunit VI35_12410 PF02547 Queuosine biosynthesis protein VI35_12415 PF00571 CBS domain VI35_12420 PF10417 C-terminal domain of 1-Cys peroxiredoxin VI35_12420 PF00578 AhpC/TSA family VI35_12425 PF07992 Pyridine nucleotide-disulphide oxidoreductase VI35_12425 PF13192 Thioredoxin domain VI35_12460 PF01597 Glycine cleavage H-protein VI35_12465 PF01571 Aminomethyltransferase folate-binding domain VI35_12465 PF08669 Glycine cleavage T-protein C-terminal barrel domain VI35_12470 PF01494 FAD binding domain VI35_12475 PF01494 FAD binding domain VI35_12480 PF03695 Uncharacterised protein family (UPF0149) VI35_12485 PF05164 Cell division protein ZapA VI35_12495 PF07690 Major Facilitator Superfamily VI35_12505 PF12911 N-terminal TM domain of oligopeptide transport permease C VI35_12505 PF00528 Binding-protein-dependent transport system inner membrane component VI35_12510 PF00528 Binding-protein-dependent transport system inner membrane component VI35_12520 PF00043 Glutathione S-transferase, C-terminal domain VI35_12520 PF02798 Glutathione S-transferase, N-terminal domain VI35_12525 PF00043 Glutathione S-transferase, C-terminal domain VI35_12525 PF02798 Glutathione S-transferase, N-terminal domain VI35_12545 PF13693 Winged helix-turn-helix DNA-binding VI35_12555 PF02796 Helix-turn-helix domain of resolvase VI35_12555 PF00239 Resolvase, N terminal domain VI35_12570 PF00459 Inositol monophosphatase family VI35_12575 PF00691 OmpA family VI35_12575 PF18393 MotY N-terminal domain VI35_12580 PF00672 HAMP domain VI35_12580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VI35_12580 PF12729 Four helix bundle sensory module for signal transduction VI35_12585 PF00929 Exonuclease VI35_12590 PF03553 Na+/H+ antiporter family VI35_12590 PF13726 Na+-H+ antiporter family VI35_12595 PF07690 Major Facilitator Superfamily VI35_12600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_12600 PF03466 LysR substrate binding domain VI35_12605 PF08448 PAS fold VI35_12605 PF08447 PAS fold VI35_12605 PF00990 Diguanylate cyclase, GGDEF domain VI35_12605 PF00563 EAL domain VI35_12615 PF03880 DbpA RNA binding domain VI35_12615 PF00270 DEAD/DEAH box helicase VI35_12615 PF00271 Helicase conserved C-terminal domain VI35_12620 PF03061 Thioesterase superfamily VI35_12645 PF03741 Integral membrane protein TerC family VI35_12645 PF03471 Transporter associated domain VI35_12650 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VI35_12655 PF00107 Zinc-binding dehydrogenase VI35_12655 PF08240 Alcohol dehydrogenase GroES-like domain VI35_12660 PF00962 Adenosine/AMP deaminase VI35_12665 PF13344 Haloacid dehalogenase-like hydrolase VI35_12675 PF13537 Glutamine amidotransferase domain VI35_12675 PF00733 Asparagine synthase VI35_12685 PF14497 Glutathione S-transferase, C-terminal domain VI35_12685 PF02798 Glutathione S-transferase, N-terminal domain VI35_12695 PF04209 homogentisate 1,2-dioxygenase VI35_12700 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VI35_12710 PF00849 RNA pseudouridylate synthase VI35_12715 PF00990 Diguanylate cyclase, GGDEF domain VI35_12715 PF13426 PAS domain VI35_12715 PF00563 EAL domain VI35_12720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VI35_12720 PF00672 HAMP domain VI35_12720 PF12729 Four helix bundle sensory module for signal transduction VI35_12730 PF00285 Citrate synthase, C-terminal domain VI35_12750 PF07715 TonB-dependent Receptor Plug Domain VI35_12750 PF07660 Secretin and TonB N terminus short domain VI35_12750 PF00593 TonB dependent receptor VI35_12760 PF01027 Inhibitor of apoptosis-promoting Bax1 VI35_12765 PF12805 FUSC-like inner membrane protein yccS VI35_12770 PF04358 DsrC like protein VI35_12775 PF05036 Sporulation related domain VI35_12790 PF01416 tRNA pseudouridine synthase VI35_12800 PF01118 Semialdehyde dehydrogenase, NAD binding domain VI35_12800 PF02774 Semialdehyde dehydrogenase, dimerisation domain VI35_12805 PF11890 Domain of unknown function (DUF3410) VI35_12805 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VI35_12805 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VI35_12815 PF03180 NLPA lipoprotein VI35_12850 PF03618 Kinase/pyrophosphorylase VI35_12860 PF00324 Amino acid permease VI35_12865 PF00589 Phage integrase family VI35_12865 PF14659 Phage integrase, N-terminal SAM-like domain VI35_12865 PF13356 Arm DNA-binding domain VI35_12910 PF00239 Resolvase, N terminal domain VI35_12910 PF02796 Helix-turn-helix domain of resolvase VI35_12920 PF01434 Peptidase family M41 VI35_12920 PF17862 AAA+ lid domain VI35_12920 PF00004 ATPase family associated with various cellular activities (AAA) VI35_13005 PF00664 ABC transporter transmembrane region VI35_13005 PF03412 Peptidase C39 family VI35_13005 PF00005 ABC transporter VI35_13010 PF04055 Radical SAM superfamily VI35_13010 PF16199 Radical_SAM C-terminal domain VI35_13015 PF04898 Glutamate synthase central domain VI35_13015 PF01645 Conserved region in glutamate synthase VI35_13015 PF00310 Glutamine amidotransferases class-II VI35_13015 PF01493 GXGXG motif VI35_13020 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VI35_13020 PF07992 Pyridine nucleotide-disulphide oxidoreductase VI35_13030 PF00528 Binding-protein-dependent transport system inner membrane component VI35_13035 PF00497 Bacterial extracellular solute-binding proteins, family 3 VI35_13060 PF14521 Lysine-specific metallo-endopeptidase VI35_13070 PF00271 Helicase conserved C-terminal domain VI35_13070 PF00270 DEAD/DEAH box helicase VI35_13085 PF08378 Nuclease-related domain VI35_13095 PF07759 Protein of unknown function (DUF1615) VI35_13100 PF00990 Diguanylate cyclase, GGDEF domain VI35_13105 PF00682 HMGL-like VI35_13105 PF08502 LeuA allosteric (dimerisation) domain VI35_13115 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VI35_13115 PF00117 Glutamine amidotransferase class-I VI35_13120 PF01113 Dihydrodipicolinate reductase, N-terminus VI35_13120 PF05173 Dihydrodipicolinate reductase, C-terminus VI35_13140 PF01842 ACT domain VI35_13140 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VI35_13140 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VI35_13145 PF01219 Prokaryotic diacylglycerol kinase VI35_13150 PF00793 DAHP synthetase I family VI35_13185 PF17910 FeoB cytosolic helical domain VI35_13185 PF02421 Ferrous iron transport protein B VI35_13185 PF07670 Nucleoside recognition VI35_13185 PF07664 Ferrous iron transport protein B C terminus VI35_13195 PF01253 Translation initiation factor SUI1 VI35_13200 PF01169 Uncharacterized protein family UPF0016 VI35_13240 PF13737 Transposase DDE domain VI35_13255 PF01406 tRNA synthetases class I (C) catalytic domain VI35_13255 PF09190 DALR domain VI35_13260 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VI35_13270 PF00149 Calcineurin-like phosphoesterase VI35_13275 PF04226 Transglycosylase associated protein VI35_13280 PF00440 Bacterial regulatory proteins, tetR family VI35_13280 PF16925 Tetracyclin repressor-like, C-terminal domain VI35_13295 PF01979 Amidohydrolase family VI35_13300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_13300 PF03466 LysR substrate binding domain VI35_13320 PF01066 CDP-alcohol phosphatidyltransferase VI35_13325 PF01541 GIY-YIG catalytic domain VI35_13325 PF08459 UvrC Helix-hairpin-helix N-terminal VI35_13325 PF02151 UvrB/uvrC motif VI35_13330 PF00196 Bacterial regulatory proteins, luxR family VI35_13330 PF00072 Response regulator receiver domain VI35_13335 PF02348 Cytidylyltransferase VI35_13340 PF03966 Trm112p-like protein VI35_13350 PF00664 ABC transporter transmembrane region VI35_13350 PF00005 ABC transporter VI35_13370 PF05872 Bacterial protein of unknown function (DUF853) VI35_13375 PF00155 Aminotransferase class I and II VI35_13385 PF13609 Gram-negative porin VI35_13390 PF13307 Helicase C-terminal domain VI35_13390 PF06733 DEAD_2 VI35_13405 PF07690 Major Facilitator Superfamily VI35_13415 PF00245 Alkaline phosphatase VI35_13420 PF00245 Alkaline phosphatase VI35_13435 PF01272 Transcription elongation factor, GreA/GreB, C-term VI35_13435 PF14760 Rnk N-terminus VI35_13445 PF00497 Bacterial extracellular solute-binding proteins, family 3 VI35_13450 PF00528 Binding-protein-dependent transport system inner membrane component VI35_13455 PF00005 ABC transporter VI35_13465 PF13520 Amino acid permease VI35_13470 PF02310 B12 binding domain VI35_13470 PF00809 Pterin binding enzyme VI35_13470 PF02574 Homocysteine S-methyltransferase VI35_13470 PF02965 Vitamin B12 dependent methionine synthase, activation domain VI35_13470 PF02607 B12 binding domain VI35_13480 PF00571 CBS domain VI35_13480 PF03471 Transporter associated domain VI35_13480 PF01595 Cyclin M transmembrane N-terminal domain VI35_13485 PF01895 PhoU domain VI35_13495 PF00528 Binding-protein-dependent transport system inner membrane component VI35_13505 PF14437 MafB19-like deaminase VI35_13525 PF00463 Isocitrate lyase family VI35_13530 PF00308 Bacterial dnaA protein VI35_13545 PF02769 AIR synthase related protein, C-terminal domain VI35_13545 PF00586 AIR synthase related protein, N-terminal domain VI35_13550 PF00551 Formyl transferase VI35_13555 PF01784 NIF3 (NGG1p interacting factor 3) VI35_13565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VI35_13565 PF00512 His Kinase A (phospho-acceptor) domain VI35_13565 PF00989 PAS fold VI35_13570 PF00072 Response regulator receiver domain VI35_13570 PF00158 Sigma-54 interaction domain VI35_13570 PF02954 Bacterial regulatory protein, Fis family VI35_13590 PF13089 Polyphosphate kinase N-terminal domain VI35_13590 PF17941 Polyphosphate kinase C-terminal domain 1 VI35_13590 PF13090 Polyphosphate kinase C-terminal domain 2 VI35_13590 PF02503 Polyphosphate kinase middle domain VI35_13595 PF02541 Ppx/GppA phosphatase family VI35_13600 PF03448 MgtE intracellular N domain VI35_13600 PF01769 Divalent cation transporter VI35_13600 PF00571 CBS domain VI35_13615 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VI35_13615 PF10135 Rod binding protein VI35_13625 PF02107 Flagellar L-ring protein VI35_13630 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VI35_13630 PF00460 Flagella basal body rod protein VI35_13640 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VI35_13640 PF07559 Flagellar basal body protein FlaE VI35_13640 PF00460 Flagella basal body rod protein VI35_13650 PF00460 Flagella basal body rod protein VI35_13650 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VI35_13655 PF00460 Flagella basal body rod protein VI35_13660 PF01739 CheR methyltransferase, SAM binding domain VI35_13660 PF03705 CheR methyltransferase, all-alpha domain VI35_13665 PF01584 CheW-like domain VI35_13665 PF00072 Response regulator receiver domain VI35_13670 PF13144 Chaperone for flagella basal body P-ring formation VI35_13685 PF12850 Calcineurin-like phosphoesterase superfamily domain VI35_13690 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VI35_13700 PF00849 RNA pseudouridylate synthase VI35_13700 PF01479 S4 domain VI35_13705 PF01966 HD domain VI35_13715 PF00892 EamA-like transporter family VI35_13720 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VI35_13745 PF00313 'Cold-shock' DNA-binding domain VI35_13750 PF00364 Biotin-requiring enzyme VI35_13750 PF02817 e3 binding domain VI35_13750 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VI35_13755 PF02779 Transketolase, pyrimidine binding domain VI35_13755 PF02780 Transketolase, C-terminal domain VI35_13760 PF00676 Dehydrogenase E1 component VI35_13765 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VI35_13775 PF05472 DNA replication terminus site-binding protein (Ter protein) VI35_13780 PF00271 Helicase conserved C-terminal domain VI35_13780 PF00176 SNF2 family N-terminal domain VI35_13780 PF04434 SWIM zinc finger VI35_13785 PF04337 Protein of unknown function, DUF480 VI35_13800 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase VI35_13805 PF00483 Nucleotidyl transferase VI35_13810 PF04321 RmlD substrate binding domain VI35_13815 PF02397 Bacterial sugar transferase VI35_13820 PF00535 Glycosyl transferase family 2 VI35_13840 PF01943 Polysaccharide biosynthesis protein VI35_13845 PF14602 Hexapeptide repeat of succinyl-transferase VI35_13845 PF12464 Maltose acetyltransferase VI35_13845 PF00132 Bacterial transferase hexapeptide (six repeats) VI35_13855 PF02348 Cytidylyltransferase VI35_13860 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VI35_13860 PF02894 Oxidoreductase family, C-terminal alpha/beta domain VI35_13865 PF00483 Nucleotidyl transferase VI35_13875 PF03102 NeuB family VI35_13875 PF08666 SAF domain VI35_13880 PF02350 UDP-N-acetylglucosamine 2-epimerase VI35_13885 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VI35_13890 PF02719 Polysaccharide biosynthesis protein VI35_13895 PF16363 GDP-mannose 4,6 dehydratase VI35_13900 PF00072 Response regulator receiver domain VI35_13900 PF00486 Transcriptional regulatory protein, C terminal VI35_13910 PF02685 Glucokinase VI35_13915 PF01380 SIS domain VI35_13915 PF01418 Helix-turn-helix domain, rpiR family VI35_13920 PF02887 Pyruvate kinase, alpha/beta domain VI35_13920 PF00224 Pyruvate kinase, barrel domain VI35_13930 PF00873 AcrB/AcrD/AcrF family VI35_13935 PF09317 Domain of unknown function (DUF1974) VI35_13935 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VI35_13935 PF02770 Acyl-CoA dehydrogenase, middle domain VI35_13935 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VI35_13940 PF00440 Bacterial regulatory proteins, tetR family VI35_13960 PF02321 Outer membrane efflux protein VI35_13970 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VI35_13970 PF00529 HlyD membrane-fusion protein of T1SS VI35_14000 PF01479 S4 domain VI35_14000 PF00849 RNA pseudouridylate synthase VI35_14005 PF04079 Segregation and condensation complex subunit ScpB VI35_14015 PF01300 Telomere recombination VI35_14025 PF00425 chorismate binding enzyme VI35_14025 PF04715 Anthranilate synthase component I, N terminal region VI35_14030 PF00117 Glutamine amidotransferase class-I VI35_14030 PF02885 Glycosyl transferase family, helical bundle domain VI35_14030 PF00591 Glycosyl transferase family, a/b domain VI35_14035 PF00591 Glycosyl transferase family, a/b domain VI35_14035 PF02885 Glycosyl transferase family, helical bundle domain VI35_14040 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VI35_14040 PF00218 Indole-3-glycerol phosphate synthase VI35_14045 PF00291 Pyridoxal-phosphate dependent enzyme VI35_14050 PF00290 Tryptophan synthase alpha chain VI35_14060 PF01381 Helix-turn-helix VI35_14065 PF13657 HipA N-terminal domain VI35_14065 PF07804 HipA-like C-terminal domain VI35_14085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_14085 PF03466 LysR substrate binding domain VI35_14095 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VI35_14100 PF00005 ABC transporter VI35_14105 PF00528 Binding-protein-dependent transport system inner membrane component VI35_14115 PF07237 Protein of unknown function (DUF1428) VI35_14120 PF07690 Major Facilitator Superfamily VI35_14125 PF01040 UbiA prenyltransferase family VI35_14130 PF03626 Prokaryotic Cytochrome C oxidase subunit IV VI35_14135 PF00510 Cytochrome c oxidase subunit III VI35_14145 PF06481 COX Aromatic Rich Motif VI35_14145 PF00116 Cytochrome C oxidase subunit II, periplasmic domain VI35_14150 PF02627 Carboxymuconolactone decarboxylase family VI35_14155 PF03466 LysR substrate binding domain VI35_14155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_14165 PF01156 Inosine-uridine preferring nucleoside hydrolase VI35_14175 PF01047 MarR family VI35_14190 PF00127 Copper binding proteins, plastocyanin/azurin family VI35_14205 PF00072 Response regulator receiver domain VI35_14225 PF00529 HlyD membrane-fusion protein of T1SS VI35_14225 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VI35_14230 PF00873 AcrB/AcrD/AcrF family VI35_14255 PF00873 AcrB/AcrD/AcrF family VI35_14270 PF04143 Sulphur transport VI35_14275 PF01022 Bacterial regulatory protein, arsR family VI35_14295 PF02308 MgtC family VI35_14300 PF13407 Periplasmic binding protein domain VI35_14300 PF00356 Bacterial regulatory proteins, lacI family VI35_14310 PF02378 Phosphotransferase system, EIIC VI35_14310 PF00367 phosphotransferase system, EIIB VI35_14315 PF00294 pfkB family carbohydrate kinase VI35_14320 PF11471 Maltoporin periplasmic N-terminal extension VI35_14320 PF02264 LamB porin VI35_14325 PF00684 DnaJ central domain VI35_14325 PF01556 DnaJ C terminal domain VI35_14325 PF00226 DnaJ domain VI35_14330 PF00012 Hsp70 protein VI35_14335 PF01025 GrpE VI35_14340 PF01513 ATP-NAD kinase VI35_14360 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VI35_14370 PF02321 Outer membrane efflux protein VI35_14375 PF04954 Siderophore-interacting protein VI35_14375 PF08021 Siderophore-interacting FAD-binding domain VI35_14380 PF00793 DAHP synthetase I family VI35_14385 PF00816 H-NS histone family VI35_14390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_14390 PF03466 LysR substrate binding domain VI35_14445 PF00583 Acetyltransferase (GNAT) family VI35_14450 PF00849 RNA pseudouridylate synthase VI35_14455 PF00293 NUDIX domain VI35_14465 PF04356 Protein of unknown function (DUF489) VI35_14470 PF08328 Adenylosuccinate lyase C-terminal VI35_14470 PF00206 Lyase VI35_14480 PF02887 Pyruvate kinase, alpha/beta domain VI35_14480 PF00224 Pyruvate kinase, barrel domain VI35_14485 PF12795 Mechanosensitive ion channel porin domain VI35_14485 PF12794 Mechanosensitive ion channel inner membrane domain 1 VI35_14485 PF00924 Mechanosensitive ion channel VI35_14490 PF01810 LysE type translocator VI35_14495 PF10282 Lactonase, 7-bladed beta-propeller VI35_14505 PF00860 Permease family VI35_14515 PF00390 Malic enzyme, N-terminal domain VI35_14515 PF03949 Malic enzyme, NAD binding domain VI35_14520 PF12804 MobA-like NTP transferase domain VI35_14525 PF03205 Molybdopterin guanine dinucleotide synthesis protein B VI35_14530 PF04632 Fusaric acid resistance protein family VI35_14575 PF02028 BCCT, betaine/carnitine/choline family transporter VI35_14595 PF00291 Pyridoxal-phosphate dependent enzyme VI35_14595 PF14821 Threonine synthase N terminus VI35_14600 PF00288 GHMP kinases N terminal domain VI35_14600 PF08544 GHMP kinases C terminal VI35_14605 PF01842 ACT domain VI35_14605 PF03447 Homoserine dehydrogenase, NAD binding domain VI35_14605 PF13840 ACT domain VI35_14605 PF00696 Amino acid kinase family VI35_14605 PF00742 Homoserine dehydrogenase VI35_14610 PF00588 SpoU rRNA Methylase family VI35_14615 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) VI35_14640 PF00486 Transcriptional regulatory protein, C terminal VI35_14640 PF00072 Response regulator receiver domain VI35_14660 PF00005 ABC transporter VI35_14660 PF00664 ABC transporter transmembrane region VI35_14680 PF01980 tRNA-methyltransferase O VI35_14680 PF18389 TrmO C-terminal domain VI35_14685 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VI35_14685 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VI35_14695 PF06480 FtsH Extracellular VI35_14695 PF00004 ATPase family associated with various cellular activities (AAA) VI35_14695 PF17862 AAA+ lid domain VI35_14695 PF01434 Peptidase family M41 VI35_14700 PF00291 Pyridoxal-phosphate dependent enzyme VI35_14705 PF00381 PTS HPr component phosphorylation site VI35_14710 PF05524 PEP-utilising enzyme, N-terminal VI35_14710 PF02896 PEP-utilising enzyme, TIM barrel domain VI35_14710 PF00391 PEP-utilising enzyme, mobile domain VI35_14715 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VI35_14730 PF00149 Calcineurin-like phosphoesterase VI35_14730 PF12320 Type 5 capsule protein repressor C-terminal domain VI35_14755 PF02254 TrkA-N domain VI35_14755 PF00999 Sodium/hydrogen exchanger family VI35_14760 PF00158 Sigma-54 interaction domain VI35_14760 PF02954 Bacterial regulatory protein, Fis family VI35_14760 PF00072 Response regulator receiver domain VI35_14795 PF01381 Helix-turn-helix VI35_14795 PF07883 Cupin domain VI35_14800 PF00171 Aldehyde dehydrogenase family VI35_14810 PF00202 Aminotransferase class-III VI35_14815 PF00324 Amino acid permease VI35_14820 PF13520 Amino acid permease VI35_14830 PF02690 Na+/Pi-cotransporter VI35_14835 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VI35_14835 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VI35_14840 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase VI35_14845 PF00512 His Kinase A (phospho-acceptor) domain VI35_14845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VI35_14845 PF00497 Bacterial extracellular solute-binding proteins, family 3 VI35_14845 PF01627 Hpt domain VI35_14845 PF00072 Response regulator receiver domain VI35_14845 PF00989 PAS fold VI35_14850 PF10725 Protein of unknown function (DUF2517) VI35_14880 PF03734 L,D-transpeptidase catalytic domain VI35_14880 PF01476 LysM domain VI35_14880 PF17969 L,D-transpeptidase C-terminal domain VI35_14895 PF05971 RNA methyltransferase VI35_14900 PF00877 NlpC/P60 family VI35_14905 PF01648 4'-phosphopantetheinyl transferase superfamily VI35_14910 PF00085 Thioredoxin VI35_14920 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VI35_14925 PF01842 ACT domain VI35_14925 PF00551 Formyl transferase VI35_14935 PF13396 Phospholipase_D-nuclease N-terminal VI35_14935 PF13091 PLD-like domain VI35_14950 PF01551 Peptidase family M23 VI35_14950 PF01464 Transglycosylase SLT domain VI35_14950 PF10145 Phage-related minor tail protein VI35_14955 PF00230 Major intrinsic protein VI35_14960 PF02075 Crossover junction endodeoxyribonuclease RuvC VI35_14965 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VI35_14995 PF13737 Transposase DDE domain VI35_15005 PF04055 Radical SAM superfamily VI35_15005 PF11842 Domain of unknown function (DUF3362) VI35_15005 PF08497 Radical SAM N-terminal VI35_15010 PF00873 AcrB/AcrD/AcrF family VI35_15045 PF01389 OmpA-like transmembrane domain VI35_15045 PF00691 OmpA family VI35_15050 PF01389 OmpA-like transmembrane domain VI35_15050 PF00691 OmpA family VI35_15055 PF01389 OmpA-like transmembrane domain VI35_15055 PF00691 OmpA family VI35_15060 PF03949 Malic enzyme, NAD binding domain VI35_15060 PF00390 Malic enzyme, N-terminal domain VI35_15065 PF12833 Helix-turn-helix domain VI35_15070 PF01554 MatE VI35_15075 PF10692 Protein of unknown function (DUF2498) VI35_15080 PF00990 Diguanylate cyclase, GGDEF domain VI35_15080 PF00072 Response regulator receiver domain VI35_15100 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VI35_15100 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VI35_15105 PF01699 Sodium/calcium exchanger protein VI35_15110 PF08534 Redoxin VI35_15115 PF00293 NUDIX domain VI35_15125 PF00005 ABC transporter VI35_15135 PF00528 Binding-protein-dependent transport system inner membrane component VI35_15155 PF00005 ABC transporter VI35_15160 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VI35_15160 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VI35_15185 PF00480 ROK family VI35_15200 PF12849 PBP superfamily domain VI35_15210 PF00072 Response regulator receiver domain VI35_15210 PF00486 Transcriptional regulatory protein, C terminal VI35_15215 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VI35_15225 PF01590 GAF domain VI35_15225 PF00158 Sigma-54 interaction domain VI35_15225 PF02954 Bacterial regulatory protein, Fis family VI35_15230 PF00171 Aldehyde dehydrogenase family VI35_15250 PF00248 Aldo/keto reductase family VI35_15260 PF00072 Response regulator receiver domain VI35_15260 PF12431 Transcriptional regulator VI35_15270 PF01047 MarR family VI35_15275 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VI35_15275 PF00529 HlyD membrane-fusion protein of T1SS VI35_15295 PF01679 Proteolipid membrane potential modulator VI35_15305 PF03477 ATP cone domain VI35_15305 PF13597 Anaerobic ribonucleoside-triphosphate reductase VI35_15315 PF01653 NAD-dependent DNA ligase adenylation domain VI35_15315 PF12826 Helix-hairpin-helix motif VI35_15315 PF00533 BRCA1 C Terminus (BRCT) domain VI35_15315 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VI35_15315 PF03120 NAD-dependent DNA ligase OB-fold domain VI35_15320 PF04354 ZipA, C-terminal FtsZ-binding domain VI35_15345 PF05951 Bacterial protein of unknown function (DUF882) VI35_15350 PF01471 Putative peptidoglycan binding domain VI35_15350 PF03734 L,D-transpeptidase catalytic domain VI35_15365 PF00535 Glycosyl transferase family 2 VI35_15380 PF00128 Alpha amylase, catalytic domain VI35_15415 PF00990 Diguanylate cyclase, GGDEF domain VI35_15420 PF09179 TilS substrate binding domain VI35_15420 PF01171 PP-loop family VI35_15420 PF11734 TilS substrate C-terminal domain VI35_15425 PF05649 Peptidase family M13 VI35_15425 PF01431 Peptidase family M13 VI35_15435 PF16326 ABC transporter C-terminal domain VI35_15435 PF12848 ABC transporter VI35_15435 PF00005 ABC transporter VI35_15445 PF13520 Amino acid permease VI35_15455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_15455 PF03466 LysR substrate binding domain VI35_15465 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VI35_15470 PF02811 PHP domain VI35_15470 PF14579 Helix-hairpin-helix motif VI35_15470 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VI35_15470 PF01336 OB-fold nucleic acid binding domain VI35_15470 PF07733 Bacterial DNA polymerase III alpha NTPase domain VI35_15485 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VI35_15485 PF00132 Bacterial transferase hexapeptide (six repeats) VI35_15490 PF07977 FabA-like domain VI35_15495 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VI35_15495 PF00132 Bacterial transferase hexapeptide (six repeats) VI35_15500 PF03938 Outer membrane protein (OmpH-like) VI35_15505 PF01103 Surface antigen VI35_15505 PF07244 Surface antigen variable number repeat VI35_15510 PF02163 Peptidase family M50 VI35_15510 PF17820 PDZ domain VI35_15530 PF01765 Ribosome recycling factor VI35_15535 PF00696 Amino acid kinase family VI35_15540 PF00889 Elongation factor TS VI35_15545 PF00318 Ribosomal protein S2 VI35_15550 PF00557 Metallopeptidase family M24 VI35_15555 PF01909 Nucleotidyltransferase domain VI35_15555 PF08335 GlnD PII-uridylyltransferase VI35_15555 PF01842 ACT domain VI35_15555 PF01966 HD domain VI35_15560 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal VI35_15560 PF00132 Bacterial transferase hexapeptide (six repeats) VI35_15560 PF14602 Hexapeptide repeat of succinyl-transferase VI35_15565 PF11944 Protein of unknown function (DUF3461) VI35_15570 PF00367 phosphotransferase system, EIIB VI35_15570 PF02378 Phosphotransferase system, EIIC VI35_15575 PF07148 Maltose operon periplasmic protein precursor (MalM) VI35_15580 PF02264 LamB porin VI35_15585 PF00258 Flavodoxin VI35_15590 PF00849 RNA pseudouridylate synthase VI35_15595 PF04287 tRNA pseudouridine synthase C VI35_15620 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) VI35_15625 PF07348 Syd protein (SUKH-2) VI35_15630 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VI35_15630 PF14489 QueF-like protein VI35_15645 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VI35_15645 PF11892 Domain of unknown function (DUF3412) VI35_15645 PF03641 Possible lysine decarboxylase VI35_15655 PF18324 Hypothetical protein TT1725 VI35_15655 PF00180 Isocitrate/isopropylmalate dehydrogenase VI35_15665 PF01728 FtsJ-like methyltransferase VI35_15665 PF18125 RlmM ferredoxin-like domain VI35_15670 PF04241 Protein of unknown function (DUF423) VI35_15680 PF03466 LysR substrate binding domain VI35_15680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_15685 PF00672 HAMP domain VI35_15685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VI35_15690 PF11799 impB/mucB/samB family C-terminal domain VI35_15690 PF11798 IMS family HHH motif VI35_15690 PF00817 impB/mucB/samB family VI35_15705 PF02424 ApbE family VI35_15710 PF00970 Oxidoreductase FAD-binding domain VI35_15710 PF00111 2Fe-2S iron-sulfur cluster binding domain VI35_15710 PF00175 Oxidoreductase NAD-binding domain VI35_15715 PF02508 Rnf-Nqr subunit, membrane protein VI35_15720 PF02508 Rnf-Nqr subunit, membrane protein VI35_15725 PF04205 FMN-binding domain VI35_15730 PF03116 NQR2, RnfD, RnfE family VI35_15735 PF11973 NQRA C-terminal domain VI35_15735 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) VI35_15740 PF01722 BolA-like protein VI35_15745 PF05175 Methyltransferase small domain VI35_15755 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VI35_15765 PF07690 Major Facilitator Superfamily VI35_15770 PF03502 Nucleoside-specific channel-forming protein, Tsx VI35_15775 PF04461 Protein of unknown function (DUF520) VI35_15780 PF02558 Ketopantoate reductase PanE/ApbA VI35_15780 PF08546 Ketopantoate reductase PanE/ApbA C terminal VI35_15785 PF01965 DJ-1/PfpI family VI35_15825 PF04717 Type VI secretion system, phage-baseplate injector VI35_15835 PF05638 Type VI secretion system effector, Hcp VI35_15840 PF00196 Bacterial regulatory proteins, luxR family VI35_15840 PF03472 Autoinducer binding domain VI35_15845 PF00916 Sulfate permease family VI35_15845 PF01740 STAS domain VI35_15860 PF16363 GDP-mannose 4,6 dehydratase VI35_15865 PF00175 Oxidoreductase NAD-binding domain VI35_15865 PF00042 Globin VI35_15865 PF00970 Oxidoreductase FAD-binding domain VI35_15870 PF03063 Prismane/CO dehydrogenase family VI35_15875 PF00210 Ferritin-like domain VI35_15915 PF00106 short chain dehydrogenase VI35_15925 PF00875 DNA photolyase VI35_15925 PF03441 FAD binding domain of DNA photolyase VI35_15930 PF13411 MerR HTH family regulatory protein VI35_15935 PF08349 Protein of unknown function (DUF1722) VI35_15960 PF01817 Chorismate mutase type II VI35_15960 PF00800 Prephenate dehydratase VI35_15985 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VI35_15985 PF00529 HlyD membrane-fusion protein of T1SS VI35_15990 PF00664 ABC transporter transmembrane region VI35_15990 PF00005 ABC transporter VI35_16000 PF13181 Tetratricopeptide repeat VI35_16010 PF03976 Polyphosphate kinase 2 (PPK2) VI35_16015 PF07995 Glucose / Sorbosone dehydrogenase VI35_16025 PF00455 DeoR C terminal sensor domain VI35_16025 PF08220 DeoR-like helix-turn-helix domain VI35_16030 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VI35_16030 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VI35_16035 PF17042 Nucleotide-binding C-terminal domain VI35_16035 PF07005 Sugar-binding N-terminal domain VI35_16040 PF00596 Class II Aldolase and Adducin N-terminal domain VI35_16045 PF01261 Xylose isomerase-like TIM barrel VI35_16050 PF01370 NAD dependent epimerase/dehydratase family VI35_16055 PF02447 GntP family permease VI35_16070 PF03573 outer membrane porin, OprD family VI35_16075 PF00106 short chain dehydrogenase VI35_16110 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain VI35_16110 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VI35_16120 PF06906 Protein of unknown function (DUF1272) VI35_16135 PF01810 LysE type translocator VI35_16140 PF03466 LysR substrate binding domain VI35_16140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_16180 PF01568 Molydopterin dinucleotide binding domain VI35_16180 PF00384 Molybdopterin oxidoreductase VI35_16180 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VI35_16185 PF03916 Polysulphide reductase, NrfD VI35_16195 PF00989 PAS fold VI35_16195 PF00512 His Kinase A (phospho-acceptor) domain VI35_16195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VI35_16200 PF00072 Response regulator receiver domain VI35_16200 PF00196 Bacterial regulatory proteins, luxR family VI35_16205 PF03575 Peptidase family S51 VI35_16210 PF07690 Major Facilitator Superfamily VI35_16215 PF00529 HlyD membrane-fusion protein of T1SS VI35_16215 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VI35_16225 PF10415 Fumarase C C-terminus VI35_16225 PF00206 Lyase VI35_16235 PF01619 Proline dehydrogenase VI35_16235 PF00171 Aldehyde dehydrogenase family VI35_16235 PF18327 Proline utilization A proline dehydrogenase N-terminal domain VI35_16235 PF14850 DNA-binding domain of Proline dehydrogenase VI35_16240 PF00842 Alanine racemase, C-terminal domain VI35_16240 PF01168 Alanine racemase, N-terminal domain VI35_16245 PF03796 DnaB-like helicase C terminal domain VI35_16245 PF00772 DnaB-like helicase N terminal domain VI35_16260 PF00149 Calcineurin-like phosphoesterase VI35_16260 PF02872 5'-nucleotidase, C-terminal domain VI35_16285 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VI35_16285 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VI35_16295 PF04102 SlyX VI35_16300 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VI35_16305 PF09526 Probable metal-binding protein (DUF2387) VI35_16315 PF00072 Response regulator receiver domain VI35_16315 PF01584 CheW-like domain VI35_16325 PF00990 Diguanylate cyclase, GGDEF domain VI35_16325 PF00360 Phytochrome region VI35_16325 PF00563 EAL domain VI35_16325 PF01590 GAF domain VI35_16330 PF06794 Uncharacterised protein family (UPF0270) VI35_16335 PF00485 Phosphoribulokinase / Uridine kinase family VI35_16350 PF02566 OsmC-like protein VI35_16355 PF13545 Crp-like helix-turn-helix domain VI35_16355 PF00027 Cyclic nucleotide-binding domain VI35_16360 PF13847 Methyltransferase domain VI35_16365 PF08329 Chitinase A, N-terminal domain VI35_16365 PF00704 Glycosyl hydrolases family 18 VI35_16375 PF12832 MFS_1 like family VI35_16380 PF00593 TonB dependent receptor VI35_16380 PF07715 TonB-dependent Receptor Plug Domain VI35_16400 PF01243 Pyridoxamine 5'-phosphate oxidase VI35_16405 PF06228 Haem utilisation ChuX/HutX VI35_16415 PF01032 FecCD transport family VI35_16420 PF00005 ABC transporter VI35_16450 PF00535 Glycosyl transferase family 2 VI35_16460 PF01464 Transglycosylase SLT domain VI35_16465 PF00005 ABC transporter VI35_16465 PF12848 ABC transporter VI35_16480 PF05099 Tellurite resistance protein TerB VI35_16480 PF00226 DnaJ domain VI35_16490 PF01636 Phosphotransferase enzyme family VI35_16495 PF03968 OstA-like protein VI35_16495 PF04453 LPS transport system D VI35_16500 PF09312 SurA N-terminal domain VI35_16500 PF00639 PPIC-type PPIASE domain VI35_16505 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VI35_16510 PF00398 Ribosomal RNA adenine dimethylase VI35_16545 PF01926 50S ribosome-binding GTPase VI35_16545 PF01018 GTP1/OBG VI35_16550 PF01016 Ribosomal L27 protein VI35_16555 PF00829 Ribosomal prokaryotic L21 protein VI35_16560 PF00348 Polyprenyl synthetase VI35_16565 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) VI35_16570 PF01145 SPFH domain / Band 7 family VI35_16575 PF01145 SPFH domain / Band 7 family VI35_16575 PF12221 Bacterial membrane protein N terminal VI35_16580 PF16360 GTP-binding GTPase Middle Region VI35_16580 PF01926 50S ribosome-binding GTPase VI35_16580 PF13167 GTP-binding GTPase N-terminal VI35_16585 PF17209 Hfq protein VI35_16595 PF01119 DNA mismatch repair protein, C-terminal domain VI35_16595 PF08676 MutL C terminal dimerisation domain VI35_16600 PF01520 N-acetylmuramoyl-L-alanine amidase VI35_16605 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE VI35_16615 PF08331 Domain of unknown function (DUF1730) VI35_16620 PF00480 ROK family VI35_16630 PF09383 NIL domain VI35_16630 PF00005 ABC transporter VI35_16635 PF00528 Binding-protein-dependent transport system inner membrane component VI35_16640 PF03180 NLPA lipoprotein VI35_16645 PF02357 Transcription termination factor nusG VI35_16650 PF13426 PAS domain VI35_16650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VI35_16650 PF08447 PAS fold VI35_16655 PF00563 EAL domain VI35_16655 PF03707 Bacterial signalling protein N terminal repeat VI35_16655 PF00990 Diguanylate cyclase, GGDEF domain VI35_16670 PF01966 HD domain VI35_16675 PF00989 PAS fold VI35_16675 PF00512 His Kinase A (phospho-acceptor) domain VI35_16675 PF01627 Hpt domain VI35_16675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VI35_16675 PF00072 Response regulator receiver domain VI35_16675 PF18415 Histidine kinase receptor ArcB trans-membrane domain VI35_16700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_16700 PF03466 LysR substrate binding domain VI35_16710 PF01259 SAICAR synthetase VI35_16715 PF06804 NlpB/DapX lipoprotein VI35_16720 PF00701 Dihydrodipicolinate synthetase family VI35_16725 PF01842 ACT domain VI35_16730 PF00578 AhpC/TSA family VI35_16735 PF03887 YfbU domain VI35_16745 PF00871 Acetokinase family VI35_16750 PF01515 Phosphate acetyl/butaryl transferase VI35_16750 PF07085 DRTGG domain VI35_16755 PF10369 Small subunit of acetolactate synthase VI35_16765 PF00205 Thiamine pyrophosphate enzyme, central domain VI35_16765 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VI35_16765 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VI35_16775 PF04101 Glycosyltransferase family 28 C-terminal domain VI35_16775 PF03033 Glycosyltransferase family 28 N-terminal domain VI35_16780 PF01569 PAP2 superfamily VI35_16790 PF00682 HMGL-like VI35_16790 PF08502 LeuA allosteric (dimerisation) domain VI35_16795 PF00180 Isocitrate/isopropylmalate dehydrogenase VI35_16805 PF00694 Aconitase C-terminal domain VI35_16830 PF00005 ABC transporter VI35_16845 PF00317 Ribonucleotide reductase, all-alpha domain VI35_16845 PF02867 Ribonucleotide reductase, barrel domain VI35_16845 PF08343 Ribonucleotide reductase N-terminal VI35_16880 PF03060 Nitronate monooxygenase VI35_16885 PF00445 Ribonuclease T2 family VI35_16915 PF00005 ABC transporter VI35_16915 PF12704 MacB-like periplasmic core domain VI35_16915 PF02687 FtsX-like permease family VI35_16925 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase VI35_16945 PF03783 Curli production assembly/transport component CsgG VI35_16955 PF05643 Putative bacterial lipoprotein (DUF799) VI35_16960 PF00990 Diguanylate cyclase, GGDEF domain VI35_16965 PF00270 DEAD/DEAH box helicase VI35_16965 PF00271 Helicase conserved C-terminal domain VI35_16970 PF00111 2Fe-2S iron-sulfur cluster binding domain VI35_16970 PF00175 Oxidoreductase NAD-binding domain VI35_16970 PF00970 Oxidoreductase FAD-binding domain VI35_16975 PF02311 AraC-like ligand binding domain VI35_16975 PF12833 Helix-turn-helix domain VI35_16995 PF00753 Metallo-beta-lactamase superfamily VI35_17005 PF01425 Amidase VI35_17015 PF03466 LysR substrate binding domain VI35_17015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_17020 PF04480 Protein of unknown function (DUF559) VI35_17030 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VI35_17035 PF00583 Acetyltransferase (GNAT) family VI35_17040 PF14602 Hexapeptide repeat of succinyl-transferase VI35_17040 PF12804 MobA-like NTP transferase domain VI35_17040 PF00132 Bacterial transferase hexapeptide (six repeats) VI35_17045 PF00583 Acetyltransferase (GNAT) family VI35_17060 PF00990 Diguanylate cyclase, GGDEF domain VI35_17060 PF00072 Response regulator receiver domain VI35_17065 PF08448 PAS fold VI35_17065 PF00563 EAL domain VI35_17065 PF00990 Diguanylate cyclase, GGDEF domain VI35_17075 PF07728 AAA domain (dynein-related subfamily) VI35_17075 PF12592 Protein of unknown function (DUF3763) VI35_17075 PF17868 AAA lid domain VI35_17085 PF00583 Acetyltransferase (GNAT) family VI35_17095 PF00501 AMP-binding enzyme VI35_17105 PF01177 Asp/Glu/Hydantoin racemase VI35_17120 PF00392 Bacterial regulatory proteins, gntR family VI35_17120 PF00155 Aminotransferase class I and II VI35_17140 PF00209 Sodium:neurotransmitter symporter family VI35_17160 PF07690 Major Facilitator Superfamily VI35_17170 PF01037 Lrp/AsnC ligand binding domain VI35_17195 PF00293 NUDIX domain VI35_17210 PF01641 SelR domain VI35_17225 PF02446 4-alpha-glucanotransferase VI35_17230 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VI35_17230 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VI35_17235 PF01263 Aldose 1-epimerase VI35_17240 PF02445 Quinolinate synthetase A protein VI35_17245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VI35_17245 PF00672 HAMP domain VI35_17320 PF13174 Tetratricopeptide repeat VI35_17320 PF16331 TolA binding protein trimerisation VI35_17325 PF00691 OmpA family VI35_17330 PF07676 WD40-like Beta Propeller Repeat VI35_17330 PF04052 TolB amino-terminal domain VI35_17340 PF02472 Biopolymer transport protein ExbD/TolR VI35_17345 PF01618 MotA/TolQ/ExbB proton channel family VI35_17350 PF03061 Thioesterase superfamily VI35_17355 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) VI35_17360 PF08173 Membrane bound YbgT-like protein VI35_17365 PF02322 Cytochrome bd terminal oxidase subunit II VI35_17370 PF01654 Cytochrome bd terminal oxidase subunit I VI35_17375 PF05496 Holliday junction DNA helicase RuvB P-loop domain VI35_17375 PF05491 RuvB C-terminal winged helix domain VI35_17375 PF17864 RuvB AAA lid domain VI35_17385 PF07499 RuvA, C-terminal domain VI35_17385 PF01330 RuvA N terminal domain VI35_17395 PF03129 Anticodon binding domain VI35_17395 PF04073 Aminoacyl-tRNA editing domain VI35_17395 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VI35_17400 PF00929 Exonuclease VI35_17405 PF00106 short chain dehydrogenase VI35_17420 PF00378 Enoyl-CoA hydratase/isomerase VI35_17425 PF10952 Protein of unknown function (DUF2753) VI35_17440 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VI35_17450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VI35_17450 PF08447 PAS fold VI35_17455 PF00270 DEAD/DEAH box helicase VI35_17455 PF00271 Helicase conserved C-terminal domain VI35_17460 PF08534 Redoxin VI35_17465 PF00403 Heavy-metal-associated domain VI35_17470 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VI35_17470 PF17967 Pullulanase N2 domain VI35_17470 PF11852 Domain of unknown function (DUF3372) VI35_17470 PF18494 Pullulanase Ins domain VI35_17470 PF03714 Bacterial pullanase-associated domain VI35_17485 PF02583 Metal-sensitive transcriptional repressor VI35_17490 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) VI35_17495 PF01270 Glycosyl hydrolases family 8 VI35_17500 PF03170 Bacterial cellulose synthase subunit VI35_17520 PF11658 Cellulose biosynthesis protein BcsG VI35_17530 PF03466 LysR substrate binding domain VI35_17530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_17540 PF04055 Radical SAM superfamily VI35_17545 PF11230 Protein of unknown function (DUF3029) VI35_17570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VI35_17570 PF17200 Single Cache domain 2 VI35_17570 PF00672 HAMP domain VI35_17575 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading VI35_17575 PF18416 N-acetylglucosamine binding protein domain 2 VI35_17585 PF00005 ABC transporter VI35_17585 PF12857 TOBE-like domain VI35_17590 PF00528 Binding-protein-dependent transport system inner membrane component VI35_17635 PF18337 RapA N-terminal Tudor like domain VI35_17635 PF18339 RapA N-terminal Tudor like domain 1 VI35_17635 PF12137 RNA polymerase recycling family C-terminal VI35_17635 PF00271 Helicase conserved C-terminal domain VI35_17635 PF00176 SNF2 family N-terminal domain VI35_17640 PF00849 RNA pseudouridylate synthase VI35_17650 PF00990 Diguanylate cyclase, GGDEF domain VI35_17650 PF03707 Bacterial signalling protein N terminal repeat VI35_17650 PF00563 EAL domain VI35_17660 PF00118 TCP-1/cpn60 chaperonin family VI35_17665 PF00166 Chaperonin 10 Kd subunit VI35_17675 PF04186 FxsA cytoplasmic membrane protein VI35_17680 PF00206 Lyase VI35_17680 PF10415 Fumarase C C-terminus VI35_17690 PF04262 Glutamate-cysteine ligase VI35_17700 PF09335 SNARE associated Golgi protein VI35_17705 PF08240 Alcohol dehydrogenase GroES-like domain VI35_17705 PF02801 Beta-ketoacyl synthase, C-terminal domain VI35_17705 PF00550 Phosphopantetheine attachment site VI35_17705 PF00698 Acyl transferase domain VI35_17705 PF08659 KR domain VI35_17705 PF00109 Beta-ketoacyl synthase, N-terminal domain VI35_17705 PF08990 Erythronolide synthase docking VI35_17705 PF16197 Ketoacyl-synthetase C-terminal extension VI35_17705 PF14765 Polyketide synthase dehydratase VI35_17715 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VI35_17735 PF00970 Oxidoreductase FAD-binding domain VI35_17735 PF00175 Oxidoreductase NAD-binding domain VI35_17740 PF03948 Ribosomal protein L9, C-terminal domain VI35_17740 PF01281 Ribosomal protein L9, N-terminal domain VI35_17745 PF01084 Ribosomal protein S18 VI35_17750 PF01250 Ribosomal protein S6 VI35_17755 PF01566 Natural resistance-associated macrophage protein VI35_17765 PF13673 Acetyltransferase (GNAT) domain VI35_17780 PF00588 SpoU rRNA Methylase family VI35_17780 PF08032 RNA 2'-O ribose methyltransferase substrate binding VI35_17785 PF17876 Cold shock domain VI35_17785 PF08461 Ribonuclease R winged-helix domain VI35_17785 PF08206 Ribonuclease B OB domain VI35_17785 PF00773 RNB domain VI35_17785 PF00575 S1 RNA binding domain VI35_17790 PF00990 Diguanylate cyclase, GGDEF domain VI35_17795 PF02664 S-Ribosylhomocysteinase (LuxS) VI35_17805 PF00543 Nitrogen regulatory protein P-II VI35_17845 PF07963 Prokaryotic N-terminal methylation motif VI35_17845 PF14245 Type IV pilin PilA VI35_17850 PF02401 LytB protein VI35_17855 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VI35_17860 PF01252 Signal peptidase (SPase) II VI35_17865 PF08264 Anticodon-binding domain of tRNA VI35_17865 PF00133 tRNA synthetases class I (I, L, M and V) VI35_17865 PF06827 Zinc finger found in FPG and IleRS VI35_17870 PF01687 Riboflavin kinase VI35_17870 PF06574 FAD synthetase VI35_17880 PF01649 Ribosomal protein S20 VI35_17885 PF01022 Bacterial regulatory protein, arsR family VI35_17890 PF03466 LysR substrate binding domain VI35_17890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_17900 PF06965 Na+/H+ antiporter 1 VI35_17905 PF00303 Thymidylate synthase VI35_17910 PF01790 Prolipoprotein diacylglyceryl transferase VI35_17925 PF02976 DNA mismatch repair enzyme MutH VI35_17935 PF01245 Ribosomal protein L19 VI35_17940 PF01746 tRNA (Guanine-1)-methyltransferase VI35_17945 PF01782 RimM N-terminal domain VI35_17945 PF05239 PRC-barrel domain VI35_17950 PF00886 Ribosomal protein S16 VI35_17955 PF00448 SRP54-type protein, GTPase domain VI35_17955 PF02881 SRP54-type protein, helical bundle domain VI35_17955 PF02978 Signal peptide binding domain VI35_17960 PF01578 Cytochrome C assembly protein VI35_17965 PF01595 Cyclin M transmembrane N-terminal domain VI35_17965 PF03471 Transporter associated domain VI35_17965 PF00571 CBS domain VI35_17970 PF02082 Transcriptional regulator VI35_17975 PF00175 Oxidoreductase NAD-binding domain VI35_17975 PF00042 Globin VI35_17975 PF00970 Oxidoreductase FAD-binding domain VI35_17980 PF08238 Sel1 repeat VI35_17990 PF00056 lactate/malate dehydrogenase, NAD binding domain VI35_17990 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VI35_17995 PF00528 Binding-protein-dependent transport system inner membrane component VI35_18000 PF00528 Binding-protein-dependent transport system inner membrane component VI35_18005 PF00497 Bacterial extracellular solute-binding proteins, family 3 VI35_18010 PF00005 ABC transporter VI35_18015 PF01316 Arginine repressor, DNA binding domain VI35_18015 PF02863 Arginine repressor, C-terminal domain VI35_18020 PF04261 Dyp-type peroxidase family VI35_18025 PF00005 ABC transporter VI35_18025 PF08402 TOBE domain VI35_18040 PF00543 Nitrogen regulatory protein P-II VI35_18045 PF00472 RF-1 domain VI35_18050 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VI35_18050 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain VI35_18065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_18065 PF03466 LysR substrate binding domain VI35_18070 PF00255 Glutathione peroxidase VI35_18080 PF02595 Glycerate kinase family VI35_18085 PF02447 GntP family permease VI35_18090 PF17853 GGDEF-like domain VI35_18090 PF13556 PucR C-terminal helix-turn-helix domain VI35_18090 PF05651 Putative sugar diacid recognition VI35_18095 PF06062 Uncharacterised protein family (UPF0231) VI35_18115 PF02594 Uncharacterised ACR, YggU family COG1872 VI35_18120 PF02325 YGGT family VI35_18125 PF14748 Pyrroline-5-carboxylate reductase dimerisation VI35_18125 PF03807 NADP oxidoreductase coenzyme F420-dependent VI35_18130 PF01168 Alanine racemase, N-terminal domain VI35_18135 PF00437 Type II/IV secretion system protein VI35_18140 PF00437 Type II/IV secretion system protein VI35_18145 PF03883 Peroxide stress protein YaaA VI35_18150 PF00270 DEAD/DEAH box helicase VI35_18150 PF00271 Helicase conserved C-terminal domain VI35_18155 PF05175 Methyltransferase small domain VI35_18160 PF05525 Branched-chain amino acid transport protein VI35_18175 PF01475 Ferric uptake regulator family VI35_18205 PF13737 Transposase DDE domain VI35_18255 PF01207 Dihydrouridine synthase (Dus) VI35_18270 PF00216 Bacterial DNA-binding protein VI35_18275 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VI35_18280 PF07238 PilZ domain VI35_18285 PF18073 Rubredoxin metal binding domain VI35_18300 PF18429 Domain of unknown function (DUF5609) VI35_18310 PF00563 EAL domain VI35_18310 PF00990 Diguanylate cyclase, GGDEF domain VI35_18310 PF08447 PAS fold VI35_18310 PF08448 PAS fold VI35_18310 PF05231 MASE1 VI35_18310 PF13426 PAS domain VI35_18315 PF01048 Phosphorylase superfamily VI35_18320 PF01676 Metalloenzyme superfamily VI35_18325 PF02885 Glycosyl transferase family, helical bundle domain VI35_18325 PF00591 Glycosyl transferase family, a/b domain VI35_18325 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VI35_18330 PF01791 DeoC/LacD family aldolase VI35_18340 PF07670 Nucleoside recognition VI35_18340 PF07662 Na+ dependent nucleoside transporter C-terminus VI35_18340 PF01773 Na+ dependent nucleoside transporter N-terminus VI35_18350 PF07963 Prokaryotic N-terminal methylation motif VI35_18350 PF14245 Type IV pilin PilA VI35_18360 PF01938 TRAM domain VI35_18360 PF05958 tRNA (Uracil-5-)-methyltransferase VI35_18365 PF00909 Ammonium Transporter Family VI35_18385 PF03739 Lipopolysaccharide export system permease LptF/LptG VI35_18390 PF03739 Lipopolysaccharide export system permease LptF/LptG VI35_18395 PF00883 Cytosol aminopeptidase family, catalytic domain VI35_18395 PF02789 Cytosol aminopeptidase family, N-terminal domain VI35_18400 PF04364 DNA polymerase III chi subunit, HolC VI35_18405 PF10458 Valyl tRNA synthetase tRNA binding arm VI35_18405 PF08264 Anticodon-binding domain of tRNA VI35_18405 PF00133 tRNA synthetases class I (I, L, M and V) VI35_18410 PF03471 Transporter associated domain VI35_18410 PF01595 Cyclin M transmembrane N-terminal domain VI35_18410 PF00571 CBS domain VI35_18415 PF09335 SNARE associated Golgi protein VI35_18420 PF00768 D-alanyl-D-alanine carboxypeptidase VI35_18455 PF02599 Global regulator protein family VI35_18460 PF00696 Amino acid kinase family VI35_18460 PF13840 ACT domain VI35_18460 PF01842 ACT domain VI35_18465 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VI35_18465 PF01411 tRNA synthetases class II (A) VI35_18465 PF02272 DHHA1 domain VI35_18470 PF02631 RecX family VI35_18475 PF00154 recA bacterial DNA recombination protein VI35_18480 PF02464 Competence-damaged protein VI35_18490 PF05188 MutS domain II VI35_18490 PF00488 MutS domain V VI35_18490 PF05192 MutS domain III VI35_18490 PF05190 MutS family domain IV VI35_18490 PF01624 MutS domain I VI35_18495 PF02028 BCCT, betaine/carnitine/choline family transporter VI35_18510 PF04222 Protein of unknown function (DUF416) VI35_18515 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VI35_18520 PF08525 Opacity-associated protein A N-terminal motif VI35_18520 PF01476 LysM domain VI35_18520 PF01551 Peptidase family M23 VI35_18540 PF01297 Zinc-uptake complex component A periplasmic VI35_18545 PF00005 ABC transporter VI35_18550 PF00950 ABC 3 transport family VI35_18565 PF03167 Uracil DNA glycosylase superfamily VI35_18570 PF00892 EamA-like transporter family VI35_18575 PF01541 GIY-YIG catalytic domain VI35_18590 PF04012 PspA/IM30 family VI35_18595 PF01553 Acyltransferase VI35_18620 PF00578 AhpC/TSA family VI35_18630 PF00226 DnaJ domain VI35_18630 PF01556 DnaJ C terminal domain VI35_18630 PF00684 DnaJ central domain VI35_18670 PF02463 RecF/RecN/SMC N terminal domain VI35_18680 PF00521 DNA gyrase/topoisomerase IV, subunit A VI35_18680 PF03989 DNA gyrase C-terminal domain, beta-propeller VI35_18685 PF01751 Toprim domain VI35_18685 PF00986 DNA gyrase B subunit, carboxyl terminus VI35_18685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VI35_18685 PF00204 DNA gyrase B VI35_18690 PF04632 Fusaric acid resistance protein family VI35_18695 PF00529 HlyD membrane-fusion protein of T1SS VI35_18695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VI35_18700 PF07869 Protein of unknown function (DUF1656) VI35_18710 PF00293 NUDIX domain VI35_18715 PF05728 Uncharacterised protein family (UPF0227) VI35_18720 PF00149 Calcineurin-like phosphoesterase VI35_18725 PF06853 Protein of unknown function (DUF1249) VI35_18730 PF00293 NUDIX domain VI35_18735 PF02321 Outer membrane efflux protein VI35_18740 PF01467 Cytidylyltransferase-like VI35_18740 PF00294 pfkB family carbohydrate kinase VI35_18745 PF03279 Bacterial lipid A biosynthesis acyltransferase VI35_18750 PF00149 Calcineurin-like phosphoesterase VI35_18750 PF02872 5'-nucleotidase, C-terminal domain VI35_18755 PF01810 LysE type translocator VI35_18760 PF03472 Autoinducer binding domain VI35_18760 PF00196 Bacterial regulatory proteins, luxR family VI35_18765 PF00765 Autoinducer synthase VI35_18775 PF00773 RNB domain VI35_18775 PF17876 Cold shock domain VI35_18775 PF08206 Ribonuclease B OB domain VI35_18780 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VI35_18780 PF02378 Phosphotransferase system, EIIC VI35_18780 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VI35_18785 PF01232 Mannitol dehydrogenase Rossmann domain VI35_18785 PF08125 Mannitol dehydrogenase C-terminal domain VI35_18790 PF05068 Mannitol repressor VI35_18810 PF01544 CorA-like Mg2+ transporter protein VI35_18830 PF07662 Na+ dependent nucleoside transporter C-terminus VI35_18830 PF07670 Nucleoside recognition VI35_18830 PF01773 Na+ dependent nucleoside transporter N-terminus VI35_18835 PF00271 Helicase conserved C-terminal domain VI35_18835 PF03880 DbpA RNA binding domain VI35_18835 PF00270 DEAD/DEAH box helicase VI35_18855 PF01040 UbiA prenyltransferase family VI35_18870 PF12697 Alpha/beta hydrolase family VI35_18875 PF00378 Enoyl-CoA hydratase/isomerase VI35_18890 PF01752 Collagenase VI35_18890 PF08453 Peptidase family M9 N-terminal VI35_18895 PF02698 DUF218 domain VI35_18900 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VI35_18900 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VI35_18910 PF00561 alpha/beta hydrolase fold VI35_18950 PF00465 Iron-containing alcohol dehydrogenase VI35_18965 PF00106 short chain dehydrogenase VI35_18985 PF02308 MgtC family VI35_18990 PF00128 Alpha amylase, catalytic domain VI35_18990 PF16657 Maltogenic Amylase, C-terminal domain VI35_18990 PF02903 Alpha amylase, N-terminal ig-like domain VI35_19000 PF00884 Sulfatase VI35_19005 PF01037 Lrp/AsnC ligand binding domain VI35_19015 PF04204 Homoserine O-succinyltransferase VI35_19025 PF02464 Competence-damaged protein VI35_19025 PF00994 Probable molybdopterin binding domain VI35_19030 PF04307 LexA-binding, inner membrane-associated putative hydrolase VI35_19050 PF07722 Peptidase C26 VI35_19075 PF01678 Diaminopimelate epimerase VI35_19080 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VI35_19080 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VI35_19090 PF01491 Frataxin-like domain VI35_19095 PF02230 Phospholipase/Carboxylesterase VI35_19100 PF12633 Adenylate cyclase NT domain VI35_19100 PF01295 Adenylate cyclase, class-I VI35_19105 PF03900 Porphobilinogen deaminase, C-terminal domain VI35_19105 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VI35_19110 PF02602 Uroporphyrinogen-III synthase HemD VI35_19115 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase VI35_19120 PF07719 Tetratricopeptide repeat VI35_19120 PF07219 HemY protein N-terminus VI35_19125 PF03692 Putative zinc- or iron-chelating domain VI35_19130 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VI35_19145 PF07715 TonB-dependent Receptor Plug Domain VI35_19145 PF00593 TonB dependent receptor VI35_19160 PF01638 HxlR-like helix-turn-helix VI35_19165 PF08803 Putative mono-oxygenase ydhR VI35_19180 PF06055 Exopolysaccharide synthesis, ExoD VI35_19185 PF00990 Diguanylate cyclase, GGDEF domain VI35_19190 PF13036 Peptidoglycan-synthase activator LpoB VI35_19195 PF00132 Bacterial transferase hexapeptide (six repeats) VI35_19205 PF13737 Transposase DDE domain VI35_19235 PF05690 Thiazole biosynthesis protein ThiG VI35_19250 PF02581 Thiamine monophosphate synthase VI35_19255 PF01964 Radical SAM ThiC family VI35_19255 PF13667 ThiC-associated domain VI35_19270 PF00072 Response regulator receiver domain VI35_19270 PF00486 Transcriptional regulatory protein, C terminal VI35_19280 PF18030 RimK PreATP-grasp domain VI35_19280 PF08443 RimK-like ATP-grasp domain VI35_19290 PF02310 B12 binding domain VI35_19290 PF02607 B12 binding domain VI35_19290 PF02965 Vitamin B12 dependent methionine synthase, activation domain VI35_19290 PF00809 Pterin binding enzyme VI35_19290 PF02574 Homocysteine S-methyltransferase VI35_19295 PF00999 Sodium/hydrogen exchanger family VI35_19315 PF04228 Putative neutral zinc metallopeptidase VI35_19325 PF08447 PAS fold VI35_19325 PF13426 PAS domain VI35_19325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VI35_19330 PF01740 STAS domain VI35_19330 PF08678 Rsbr N terminal VI35_19335 PF13581 Histidine kinase-like ATPase domain VI35_19345 PF00072 Response regulator receiver domain VI35_19360 PF01914 MarC family integral membrane protein VI35_19375 PF00795 Carbon-nitrogen hydrolase VI35_19390 PF02545 Maf-like protein VI35_19395 PF04093 rod shape-determining protein MreD VI35_19400 PF04085 rod shape-determining protein MreC VI35_19420 PF07963 Prokaryotic N-terminal methylation motif VI35_19420 PF12019 Type II transport protein GspH VI35_19435 PF00114 Pilin (bacterial filament) VI35_19435 PF07963 Prokaryotic N-terminal methylation motif VI35_19455 PF00482 Type II secretion system (T2SS), protein F VI35_19475 PF03958 Bacterial type II/III secretion system short domain VI35_19475 PF00263 Bacterial type II and III secretion system protein VI35_19510 PF00563 EAL domain VI35_19510 PF12792 CSS motif domain associated with EAL VI35_19515 PF01699 Sodium/calcium exchanger protein VI35_19520 PF00221 Aromatic amino acid lyase VI35_19525 PF17392 Urocanase C-terminal domain VI35_19525 PF01175 Urocanase Rossmann-like domain VI35_19525 PF17391 Urocanase N-terminal domain VI35_19530 PF00491 Arginase family VI35_19535 PF01979 Amidohydrolase family VI35_19540 PF07702 UTRA domain VI35_19540 PF00392 Bacterial regulatory proteins, gntR family VI35_19545 PF00484 Carbonic anhydrase VI35_19550 PF00140 Sigma-70 factor, region 1.2 VI35_19550 PF04545 Sigma-70, region 4 VI35_19550 PF04542 Sigma-70 region 2 VI35_19555 PF18075 FtsX extracellular domain VI35_19560 PF00005 ABC transporter VI35_19565 PF02881 SRP54-type protein, helical bundle domain VI35_19565 PF00448 SRP54-type protein, GTPase domain VI35_19580 PF07226 Protein of unknown function (DUF1422) VI35_19585 PF00440 Bacterial regulatory proteins, tetR family VI35_19595 PF13091 PLD-like domain VI35_19600 PF00497 Bacterial extracellular solute-binding proteins, family 3 VI35_19600 PF01464 Transglycosylase SLT domain VI35_19610 PF02416 mttA/Hcf106 family VI35_19615 PF03466 LysR substrate binding domain VI35_19615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_19620 PF01914 MarC family integral membrane protein VI35_19625 PF10678 Protein of unknown function (DUF2492) VI35_19630 PF00375 Sodium:dicarboxylate symporter family VI35_19640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_19640 PF03466 LysR substrate binding domain VI35_19645 PF13533 Biotin-lipoyl like VI35_19655 PF07947 YhhN family VI35_19670 PF16868 NMT1-like family VI35_19675 PF00326 Prolyl oligopeptidase family VI35_19675 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VI35_19690 PF00106 short chain dehydrogenase VI35_19695 PF03466 LysR substrate binding domain VI35_19695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_19705 PF00999 Sodium/hydrogen exchanger family VI35_19705 PF02254 TrkA-N domain VI35_19760 PF01196 Ribosomal protein L17 VI35_19765 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VI35_19765 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VI35_19765 PF01000 RNA polymerase Rpb3/RpoA insert domain VI35_19770 PF00163 Ribosomal protein S4/S9 N-terminal domain VI35_19770 PF01479 S4 domain VI35_19775 PF00411 Ribosomal protein S11 VI35_19780 PF00416 Ribosomal protein S13/S18 VI35_19785 PF00444 Ribosomal protein L36 VI35_19790 PF00344 SecY translocase VI35_19795 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A VI35_19800 PF00327 Ribosomal protein L30p/L7e VI35_19805 PF03719 Ribosomal protein S5, C-terminal domain VI35_19805 PF00333 Ribosomal protein S5, N-terminal domain VI35_19810 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast VI35_19815 PF00347 Ribosomal protein L6 VI35_19820 PF00410 Ribosomal protein S8 VI35_19825 PF00253 Ribosomal protein S14p/S29e VI35_19830 PF00281 Ribosomal protein L5 VI35_19830 PF00673 ribosomal L5P family C-terminus VI35_19835 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 VI35_19835 PF00467 KOW motif VI35_19840 PF00238 Ribosomal protein L14p/L23e VI35_19845 PF00366 Ribosomal protein S17 VI35_19850 PF00831 Ribosomal L29 protein VI35_19855 PF00252 Ribosomal protein L16p/L10e VI35_19860 PF07650 KH domain VI35_19860 PF00189 Ribosomal protein S3, C-terminal domain VI35_19865 PF00237 Ribosomal protein L22p/L17e VI35_19870 PF00203 Ribosomal protein S19 VI35_19875 PF03947 Ribosomal Proteins L2, C-terminal domain VI35_19875 PF00181 Ribosomal Proteins L2, RNA binding domain VI35_19880 PF00276 Ribosomal protein L23 VI35_19885 PF00573 Ribosomal protein L4/L1 family VI35_19890 PF00297 Ribosomal protein L3 VI35_19895 PF00338 Ribosomal protein S10p/S20e VI35_19905 PF00672 HAMP domain VI35_19905 PF00512 His Kinase A (phospho-acceptor) domain VI35_19905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VI35_19910 PF00486 Transcriptional regulatory protein, C terminal VI35_19910 PF00072 Response regulator receiver domain VI35_19915 PF03449 Transcription elongation factor, N-terminal VI35_19915 PF01272 Transcription elongation factor, GreA/GreB, C-term VI35_19920 PF16921 Tex protein YqgF-like domain VI35_19920 PF09371 Tex-like protein N-terminal domain VI35_19920 PF00575 S1 RNA binding domain VI35_19920 PF17674 HHH domain VI35_19935 PF00561 alpha/beta hydrolase fold VI35_19940 PF00156 Phosphoribosyl transferase domain VI35_19945 PF01106 NifU-like domain VI35_19945 PF01521 Iron-sulphur cluster biosynthesis VI35_19950 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VI35_19950 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VI35_19955 PF02556 Preprotein translocase subunit SecB VI35_19960 PF00581 Rhodanese-like domain VI35_19965 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VI35_19965 PF01676 Metalloenzyme superfamily VI35_19970 PF01551 Peptidase family M23 VI35_19995 PF01081 KDPG and KHG aldolase VI35_20000 PF00920 Dehydratase family VI35_20005 PF01202 Shikimate kinase VI35_20010 PF02447 GntP family permease VI35_20030 PF09500 Putative thioesterase (yiiD_Cterm) VI35_20030 PF00583 Acetyltransferase (GNAT) family VI35_20040 PF02580 D-Tyr-tRNA(Tyr) deacylase VI35_20045 PF03631 Virulence factor BrkB VI35_20055 PF03951 Glutamine synthetase, beta-Grasp domain VI35_20055 PF00120 Glutamine synthetase, catalytic domain VI35_20065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VI35_20065 PF00989 PAS fold VI35_20065 PF00512 His Kinase A (phospho-acceptor) domain VI35_20075 PF00962 Adenosine/AMP deaminase VI35_20080 PF04055 Radical SAM superfamily VI35_20080 PF06969 HemN C-terminal domain VI35_20085 PF10675 Protein of unknown function (DUF2489) VI35_20090 PF04220 Der GTPase activator (YihI) VI35_20095 PF00034 Cytochrome c VI35_20100 PF01926 50S ribosome-binding GTPase VI35_20105 PF08501 Shikimate dehydrogenase substrate binding domain VI35_20105 PF18317 Shikimate 5'-dehydrogenase C-terminal domain VI35_20105 PF01488 Shikimate / quinate 5-dehydrogenase VI35_20115 PF01300 Telomere recombination VI35_20120 PF01396 Topoisomerase DNA binding C4 zinc finger VI35_20125 PF04361 Protein of unknown function (DUF494) VI35_20140 PF01327 Polypeptide deformylase VI35_20145 PF02911 Formyl transferase, C-terminal domain VI35_20145 PF00551 Formyl transferase VI35_20150 PF01029 NusB family VI35_20150 PF01189 16S rRNA methyltransferase RsmB/F VI35_20155 PF02254 TrkA-N domain VI35_20155 PF02080 TrkA-C domain VI35_20165 PF02646 RmuC family VI35_20180 PF02082 Transcriptional regulator VI35_20195 PF00117 Glutamine amidotransferase class-I VI35_20195 PF00958 GMP synthase C terminal domain VI35_20195 PF02540 NAD synthase VI35_20200 PF00171 Aldehyde dehydrogenase family VI35_20205 PF00202 Aminotransferase class-III VI35_20210 PF07883 Cupin domain VI35_20210 PF01381 Helix-turn-helix VI35_20215 PF00171 Aldehyde dehydrogenase family VI35_20220 PF00892 EamA-like transporter family VI35_20225 PF12833 Helix-turn-helix domain VI35_20255 PF14001 YdfZ protein VI35_20270 PF03466 LysR substrate binding domain VI35_20270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_20300 PF00580 UvrD/REP helicase N-terminal domain VI35_20300 PF13361 UvrD-like helicase C-terminal domain VI35_20325 PF03466 LysR substrate binding domain VI35_20325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VI35_20330 PF00107 Zinc-binding dehydrogenase VI35_20330 PF08240 Alcohol dehydrogenase GroES-like domain VI35_20335 PF00756 Putative esterase VI35_20350 PF12867 DinB superfamily VI35_20350 PF03781 Sulfatase-modifying factor enzyme 1 VI35_20355 PF13593 SBF-like CPA transporter family (DUF4137) VI35_20360 PF13520 Amino acid permease VI35_20365 PF01588 Putative tRNA binding domain VI35_20370 PF13520 Amino acid permease VI35_20375 PF04074 YhcH/YjgK/YiaL VI35_20380 PF02929 Beta galactosidase small chain VI35_20380 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VI35_20380 PF02837 Glycosyl hydrolases family 2, sugar binding domain VI35_20380 PF16353 Domain of unknown function(DUF4981) VI35_20380 PF00703 Glycosyl hydrolases family 2 VI35_20385 PF00356 Bacterial regulatory proteins, lacI family VI35_20425 PF00132 Bacterial transferase hexapeptide (six repeats) VI35_20430 PF01612 3'-5' exonuclease VI35_20430 PF00476 DNA polymerase family A VI35_20430 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VI35_20430 PF01367 5'-3' exonuclease, C-terminal SAM fold VI35_20440 PF06005 Cell division protein ZapB VI35_20455 PF16916 Dimerisation domain of Zinc Transporter VI35_20455 PF01545 Cation efflux family VI35_20460 PF00072 Response regulator receiver domain VI35_20460 PF00486 Transcriptional regulatory protein, C terminal VI35_20465 PF00672 HAMP domain VI35_20465 PF00512 His Kinase A (phospho-acceptor) domain VI35_20465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VI35_20465 PF16527 Two-component sensor protein CpxA, periplasmic domain VI35_20470 PF00588 SpoU rRNA Methylase family VI35_20475 PF01554 MatE VI35_20480 PF02630 SCO1/SenC VI35_20490 PF01726 LexA DNA binding domain VI35_20490 PF00717 Peptidase S24-like VI35_20495 PF01553 Acyltransferase VI35_20500 PF01040 UbiA prenyltransferase family VI35_20505 PF04345 Chorismate lyase VI35_20510 PF03748 Flagellar basal body-associated protein FliL VI35_20535 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VI35_20545 PF03611 PTS system sugar-specific permease component VI35_20560 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) VI35_20580 PF01370 NAD dependent epimerase/dehydratase family VI35_20585 PF08360 QacR-like protein, C-terminal region VI35_20585 PF00440 Bacterial regulatory proteins, tetR family VI35_20590 PF00155 Aminotransferase class I and II VI35_20595 PF08240 Alcohol dehydrogenase GroES-like domain VI35_20595 PF00107 Zinc-binding dehydrogenase VI35_20600 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VI35_20605 PF03707 Bacterial signalling protein N terminal repeat VI35_20605 PF00990 Diguanylate cyclase, GGDEF domain VI35_20605 PF00563 EAL domain VI35_20610 PF13361 UvrD-like helicase C-terminal domain VI35_20610 PF00580 UvrD/REP helicase N-terminal domain VI35_20620 PF02657 Fe-S metabolism associated domain VI35_20625 PF00899 ThiF family VI35_20655 PF12724 Flavodoxin domain VI35_20670 PF00557 Metallopeptidase family M24 VI35_20675 PF00501 AMP-binding enzyme VI35_20675 PF13193 AMP-binding enzyme C-terminal domain VI35_20685 PF02803 Thiolase, C-terminal domain VI35_20685 PF00108 Thiolase, N-terminal domain VI35_20690 PF00072 Response regulator receiver domain VI35_20690 PF00486 Transcriptional regulatory protein, C terminal VI35_20695 PF00672 HAMP domain VI35_20695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VI35_20695 PF00512 His Kinase A (phospho-acceptor) domain VI35_20700 PF01547 Bacterial extracellular solute-binding protein VI35_20725 PF01206 Sulfurtransferase TusA VI35_20730 PF01042 Endoribonuclease L-PSP VI35_20745 PF13488 Glycine zipper VI35_20745 PF00691 OmpA family VI35_20755 PF00857 Isochorismatase family VI35_20760 PF03352 Methyladenine glycosylase VI35_20765 PF02091 Glycyl-tRNA synthetase alpha subunit VI35_20770 PF02092 Glycyl-tRNA synthetase beta subunit VI35_20770 PF05746 DALR anticodon binding domain VI35_20780 PF00563 EAL domain VI35_20780 PF01590 GAF domain VI35_20780 PF00990 Diguanylate cyclase, GGDEF domain VI35_20780 PF00360 Phytochrome region VI35_20805 PF03222 Tryptophan/tyrosine permease family VI35_20810 PF01212 Beta-eliminating lyase VI35_20820 PF12801 4Fe-4S binding domain VI35_20830 PF18113 Rubredoxin binding C-terminal domain VI35_20830 PF07992 Pyridine nucleotide-disulphide oxidoreductase VI35_20835 PF00258 Flavodoxin VI35_20835 PF00753 Metallo-beta-lactamase superfamily VI35_20835 PF00301 Rubredoxin VI35_20840 PF00158 Sigma-54 interaction domain VI35_20840 PF01590 GAF domain VI35_20845 PF00356 Bacterial regulatory proteins, lacI family VI35_20850 PF13458 Periplasmic binding protein VI35_20855 PF02653 Branched-chain amino acid transport system / permease component VI35_20865 PF12399 Branched-chain amino acid ATP-binding cassette transporter VI35_20865 PF00005 ABC transporter VI35_20870 PF00005 ABC transporter VI35_20880 PF01810 LysE type translocator VI35_20885 PF00581 Rhodanese-like domain VI35_20890 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease VI35_20890 PF01694 Rhomboid family VI35_20910 PF00175 Oxidoreductase NAD-binding domain VI35_20915 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VI35_20925 PF07497 Rho termination factor, RNA-binding domain VI35_20925 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VI35_20925 PF07498 Rho termination factor, N-terminal domain VI35_20930 PF00085 Thioredoxin VI35_20940 PF02541 Ppx/GppA phosphatase family VI35_20950 PF04445 Putative SAM-dependent methyltransferase VI35_20955 PF03707 Bacterial signalling protein N terminal repeat VI35_20955 PF00990 Diguanylate cyclase, GGDEF domain VI35_20955 PF00563 EAL domain VI35_20960 PF01432 Peptidase family M3 VI35_20965 PF00490 Delta-aminolevulinic acid dehydratase VI35_20970 PF01026 TatD related DNase VI35_20975 PF00902 Sec-independent protein translocase protein (TatC) VI35_20980 PF02416 mttA/Hcf106 family VI35_20985 PF02416 mttA/Hcf106 family VI35_20990 PF03109 ABC1 family VI35_20995 PF02036 SCP-2 sterol transfer family VI35_21000 PF01209 ubiE/COQ5 methyltransferase family VI35_21010 PF07969 Amidohydrolase family VI35_21045 PF03544 Gram-negative bacterial TonB protein C-terminal VI35_21050 PF02472 Biopolymer transport protein ExbD/TolR VI35_21055 PF01618 MotA/TolQ/ExbB proton channel family VI35_21060 PF01618 MotA/TolQ/ExbB proton channel family VI35_21070 PF03472 Autoinducer binding domain VI35_21070 PF00196 Bacterial regulatory proteins, luxR family VI35_21075 PF01380 SIS domain VI35_21080 PF08220 DeoR-like helix-turn-helix domain VI35_21080 PF00455 DeoR C terminal sensor domain VI35_21085 PF00486 Transcriptional regulatory protein, C terminal VI35_21085 PF00072 Response regulator receiver domain VI35_21095 PF00905 Penicillin binding protein transpeptidase domain VI35_21100 PF06123 Inner membrane protein CreD VI35_21105 PF12804 MobA-like NTP transferase domain VI35_21105 PF14602 Hexapeptide repeat of succinyl-transferase VI35_21105 PF00132 Bacterial transferase hexapeptide (six repeats) VI35_21110 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VI35_21110 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VI35_21115 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VI35_21115 PF02874 ATP synthase alpha/beta family, beta-barrel domain VI35_21120 PF00231 ATP synthase VI35_21125 PF02874 ATP synthase alpha/beta family, beta-barrel domain VI35_21125 PF00306 ATP synthase alpha/beta chain, C terminal domain VI35_21125 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VI35_21130 PF00213 ATP synthase delta (OSCP) subunit VI35_21135 PF00430 ATP synthase B/B' CF(0) VI35_21140 PF00137 ATP synthase subunit C VI35_21145 PF00119 ATP synthase A chain VI35_21155 PF02195 ParB-like nuclease domain VI35_21155 PF17762 HTH domain found in ParB protein VI35_21160 PF13614 AAA domain VI35_21165 PF02527 rRNA small subunit methyltransferase G VI35_21170 PF13932 GidA associated domain VI35_21170 PF01134 Glucose inhibited division protein A VI35_21180 PF07715 TonB-dependent Receptor Plug Domain VI35_21180 PF00593 TonB dependent receptor VI35_21185 PF00005 ABC transporter VI35_21190 PF00005 ABC transporter VI35_21195 PF01497 Periplasmic binding protein VI35_21205 PF01926 50S ribosome-binding GTPase VI35_21205 PF12631 MnmE helical domain VI35_21205 PF10396 GTP-binding protein TrmE N-terminus VI35_21210 PF14849 YidC periplasmic domain VI35_21210 PF02096 60Kd inner membrane protein VI35_21215 PF01809 Putative membrane protein insertion efficiency factor VI35_21220 PF00825 Ribonuclease P VI35_21225 PF00468 Ribosomal protein L34 VI35_21235 PF00528 Binding-protein-dependent transport system inner membrane component VI35_21240 PF00497 Bacterial extracellular solute-binding proteins, family 3