VI35_00005 SM00382 ATPases associated with a variety of cellular activities VI35_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain VI35_00010 SM00480 DNA polymerase III beta subunit VI35_00020 SM00387 Histidine kinase-like ATPases VI35_00020 SM00433 TopoisomeraseII VI35_00025 SM00342 helix_turn_helix, arabinose operon control protein VI35_00055 SM00342 helix_turn_helix, arabinose operon control protein VI35_00065 SM00448 cheY-homologous receiver domain VI35_00065 SM00862 Transcriptional regulatory protein, C terminal VI35_00140 SM00458 Ricin-type beta-trefoil VI35_00160 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VI35_00160 SM00954 Region found in RelA / SpoT proteins VI35_00165 SM01409 VI35_00165 VI35_00190 SM00267 diguanylate cyclase VI35_00240 SM00267 diguanylate cyclase VI35_00290 SM00421 helix_turn_helix, Lux Regulon VI35_00290 SM00448 cheY-homologous receiver domain VI35_00295 SM00062 Bacterial periplasmic substrate-binding proteins VI35_00295 SM00387 Histidine kinase-like ATPases VI35_00295 SM00388 His Kinase A (phosphoacceptor) domain VI35_00295 SM00448 cheY-homologous receiver domain VI35_00305 SM00387 Histidine kinase-like ATPases VI35_00310 SM00448 cheY-homologous receiver domain VI35_00310 SM00850 LytTr DNA-binding domain VI35_00325 SM01001 AIR carboxylase VI35_00340 SM00360 RNA recognition motif VI35_00365 SM00881 CoA binding domain VI35_00435 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain VI35_00435 SM01232 VI35_00435 VI35_00525 SM00422 helix_turn_helix, mercury resistance VI35_00530 SM00267 diguanylate cyclase VI35_00575 SM00563 Phosphate acyltransferases VI35_00580 SM00563 Phosphate acyltransferases VI35_00645 SM00919 Malic enzyme, NAD binding domain VI35_00645 SM01274 VI35_00645 VI35_00710 SM00642 Alpha-amylase domain VI35_00755 SM01230 VI35_00755 VI35_00775 SM00382 ATPases associated with a variety of cellular activities VI35_00810 SM00341 Helicase and RNase D C-terminal VI35_00810 SM00487 DEAD-like helicases superfamily VI35_00810 SM00490 helicase superfamily c-terminal domain VI35_00810 SM00956 VI35_00810 VI35_00900 SM00382 ATPases associated with a variety of cellular activities VI35_00900 SM01086 C-terminal, D2-small domain, of ClpB protein VI35_00920 SM00836 DALR anticodon binding domain VI35_00920 SM01016 Arginyl tRNA synthetase N terminal dom VI35_00925 SM00464 Found in ATP-dependent protease La (LON) VI35_00970 SM00354 helix_turn _helix lactose operon repressor VI35_00975 SM01038 Beta galactosidase small chain VI35_00985 SM00382 ATPases associated with a variety of cellular activities VI35_00995 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VI35_00995 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VI35_01055 SM01118 VI35_01055 VI35_01060 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VI35_01060 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VI35_01085 SM01002 Alanine dehydrogenase/PNT, C-terminal domain VI35_01085 SM01003 Alanine dehydrogenase/PNT, N-terminal domain VI35_01110 SM00363 S4 RNA-binding domain VI35_01125 SM00849 Metallo-beta-lactamase superfamily VI35_01135 SM00344 helix_turn_helix ASNC type VI35_01140 SM00062 Bacterial periplasmic substrate-binding proteins VI35_01145 SM00116 Domain in cystathionine beta-synthase and other proteins. VI35_01165 SM00387 Histidine kinase-like ATPases VI35_01165 SM00388 His Kinase A (phosphoacceptor) domain VI35_01175 SM00382 ATPases associated with a variety of cellular activities VI35_01175 SM00448 cheY-homologous receiver domain VI35_01210 SM00448 cheY-homologous receiver domain VI35_01210 SM00862 Transcriptional regulatory protein, C terminal VI35_01235 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain VI35_01235 SM00437 Bacterial DNA topoisomerase I DNA-binding domain VI35_01235 SM00493 VI35_01235 VI35_01290 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. VI35_01290 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VI35_01295 SM00649 Ribosomal protein L11/L12 VI35_01320 SM00663 RNA polymerase I subunit A N-terminus VI35_01360 SM00838 Elongation factor G C-terminus VI35_01360 SM00889 Elongation factor G, domain IV VI35_01420 SM01120 VI35_01420 VI35_01430 SM00091 PAS domain VI35_01460 SM00822 VI35_01460 VI35_01470 SM00014 Acid phosphatase homologues VI35_01490 SM01060 VI35_01490 VI35_01500 SM00342 helix_turn_helix, arabinose operon control protein VI35_01500 SM00871 Bacterial transcription activator, effector binding domain VI35_01525 SM00382 ATPases associated with a variety of cellular activities VI35_01550 SM00345 helix_turn_helix gluconate operon transcriptional repressor VI35_01550 SM00866 VI35_01550 VI35_01555 SM00530 Helix-turn-helix XRE-family like proteins VI35_01605 SM00342 helix_turn_helix, arabinose operon control protein VI35_01615 SM00938 Nitrogen regulatory protein P-II VI35_01630 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VI35_01640 SM00448 cheY-homologous receiver domain VI35_01640 SM00862 Transcriptional regulatory protein, C terminal VI35_01645 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VI35_01645 SM00387 Histidine kinase-like ATPases VI35_01645 SM00388 His Kinase A (phosphoacceptor) domain VI35_01650 SM00357 Cold shock protein domain VI35_01665 SM00062 Bacterial periplasmic substrate-binding proteins VI35_01675 SM00421 helix_turn_helix, Lux Regulon VI35_01690 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VI35_01690 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VI35_01720 SM00530 Helix-turn-helix XRE-family like proteins VI35_01800 SM00382 ATPases associated with a variety of cellular activities VI35_01805 SM00116 Domain in cystathionine beta-synthase and other proteins. VI35_01825 SM00382 ATPases associated with a variety of cellular activities VI35_01900 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VI35_01905 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VI35_01955 SM00749 bacterial OsmY and nodulation domain VI35_02020 SM00382 ATPases associated with a variety of cellular activities VI35_02020 SM00448 cheY-homologous receiver domain VI35_02065 SM00858 VI35_02065 VI35_02265 SM00842 Cell division protein FtsA VI35_02270 SM00864 Tubulin/FtsZ family, GTPase domain VI35_02270 SM00865 Tubulin/FtsZ family, C-terminal domain VI35_02285 SM00957 SecA DEAD-like domain VI35_02285 SM00958 SecA preprotein cross-linking domain VI35_02380 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VI35_02380 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VI35_02385 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VI35_02385 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VI35_02400 SM00052 Putative diguanylate phosphodiesterase VI35_02420 SM00833 Cobalamin synthesis protein cobW C-terminal domain VI35_02440 SM00905 Dihydroneopterin aldolase VI35_02445 SM01207 VI35_02445 VI35_02495 SM00344 helix_turn_helix ASNC type VI35_02500 SM01266 VI35_02500 VI35_02515 SM00354 helix_turn _helix lactose operon repressor VI35_02530 SM00870 VI35_02530 VI35_02545 SM00851 MGS-like domain VI35_02630 SM00382 ATPases associated with a variety of cellular activities VI35_02700 SM01130 VI35_02700 VI35_02760 SM00478 endonuclease III VI35_02770 SM00382 ATPases associated with a variety of cellular activities VI35_02810 SM00345 helix_turn_helix gluconate operon transcriptional repressor VI35_02810 SM00895 VI35_02810 VI35_02825 SM00363 S4 RNA-binding domain VI35_02840 SM00382 ATPases associated with a variety of cellular activities VI35_02890 SM00421 helix_turn_helix, Lux Regulon VI35_02990 SM00450 Rhodanese Homology Domain VI35_03005 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VI35_03005 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VI35_03005 SM00091 PAS domain VI35_03005 SM00267 diguanylate cyclase VI35_03020 SM00859 Semialdehyde dehydrogenase, NAD binding domain VI35_03085 SM00635 Bacterial Ig-like domain 2 VI35_03090 SM00635 Bacterial Ig-like domain 2 VI35_03100 SM01266 VI35_03100 VI35_03110 SM00062 Bacterial periplasmic substrate-binding proteins VI35_03115 SM00382 ATPases associated with a variety of cellular activities VI35_03150 SM00822 VI35_03150 VI35_03165 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VI35_03165 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VI35_03175 SM00287 Bacterial SH3 domain homologues VI35_03295 SM00358 Double-stranded RNA binding motif VI35_03295 SM00535 Ribonuclease III family VI35_03325 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VI35_03325 SM00387 Histidine kinase-like ATPases VI35_03325 SM00388 His Kinase A (phosphoacceptor) domain VI35_03325 SM00448 cheY-homologous receiver domain VI35_03335 SM00954 Region found in RelA / SpoT proteins VI35_03350 SM01192 VI35_03350 VI35_03350 SM01193 VI35_03350 VI35_03390 SM00257 Lysin motif VI35_03415 SM00400 zinc finger VI35_03415 SM00493 VI35_03415 VI35_03415 SM00766 DNA primase DnaG DnaB-binding VI35_03430 SM00028 Tetratricopeptide repeats VI35_03435 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins VI35_03435 SM00632 VI35_03435 VI35_03435 SM00642 Alpha-amylase domain VI35_03455 SM00798 AICARFT/IMPCHase bienzyme VI35_03455 SM00851 MGS-like domain VI35_03460 SM00422 helix_turn_helix, mercury resistance VI35_03480 SM00729 Elongator protein 3, MiaB family, Radical SAM VI35_03510 SM00244 prohibitin homologues VI35_03540 SM00382 ATPases associated with a variety of cellular activities VI35_03545 SM00091 PAS domain VI35_03545 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VI35_03565 SM00382 ATPases associated with a variety of cellular activities VI35_03620 SM00382 ATPases associated with a variety of cellular activities VI35_03675 SM00487 DEAD-like helicases superfamily VI35_03675 SM00490 helicase superfamily c-terminal domain VI35_03675 SM00847 Helicase associated domain (HA2) Add an annotation VI35_03805 SM00382 ATPases associated with a variety of cellular activities VI35_03815 SM00448 cheY-homologous receiver domain VI35_03830 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VI35_04010 SM00422 helix_turn_helix, mercury resistance VI35_04055 SM00382 ATPases associated with a variety of cellular activities VI35_04060 SM00116 Domain in cystathionine beta-synthase and other proteins. VI35_04070 SM00260 Two component signalling adaptor domain VI35_04070 SM00448 cheY-homologous receiver domain VI35_04080 SM00382 ATPases associated with a variety of cellular activities VI35_04170 SM00382 ATPases associated with a variety of cellular activities VI35_04205 SM00052 Putative diguanylate phosphodiesterase VI35_04205 SM00091 PAS domain VI35_04205 SM00267 diguanylate cyclase VI35_04240 SM00479 VI35_04240 VI35_04280 SM00357 Cold shock protein domain VI35_04290 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VI35_04290 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VI35_04395 SM00382 ATPases associated with a variety of cellular activities VI35_04400 SM00382 ATPases associated with a variety of cellular activities VI35_04465 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VI35_04515 SM01057 Eukaryotic-type carbonic anhydrase VI35_04520 SM00477 DNA/RNA non-specific endonuclease VI35_04520 SM00892 DNA/RNA non-specific endonuclease VI35_04530 SM00852 Probable molybdopterin binding domain VI35_04555 SM00382 ATPases associated with a variety of cellular activities VI35_04610 SM00870 VI35_04610 VI35_04620 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VI35_04650 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VI35_04655 SM01266 VI35_04655 VI35_04665 SM00829 Enoylreductase VI35_04690 SM00878 Biotin carboxylase C-terminal domain VI35_04780 SM00382 ATPases associated with a variety of cellular activities VI35_04800 SM00861 Transketolase, pyrimidine binding domain VI35_04835 SM01103 VI35_04835 VI35_04845 SM00382 ATPases associated with a variety of cellular activities VI35_04885 SM00316 Ribosomal protein S1-like RNA-binding domain VI35_04905 SM01387 VI35_04905 VI35_04910 SM00316 Ribosomal protein S1-like RNA-binding domain VI35_04910 SM00322 K homology RNA-binding domain VI35_04995 SM00422 helix_turn_helix, mercury resistance VI35_05020 SM00729 Elongator protein 3, MiaB family, Radical SAM VI35_05040 SM00936 Penicillin-binding protein 5, C-terminal domain VI35_05110 SM00116 Domain in cystathionine beta-synthase and other proteins. VI35_05110 SM01091 Transporter associated domain VI35_05125 SM00729 Elongator protein 3, MiaB family, Radical SAM VI35_05195 SM00382 ATPases associated with a variety of cellular activities VI35_05205 SM00841 Elongation factor P, C-terminal VI35_05205 SM01185 VI35_05205 VI35_05215 SM01240 VI35_05215 VI35_05225 SM00387 Histidine kinase-like ATPases VI35_05225 SM00388 His Kinase A (phosphoacceptor) domain VI35_05230 SM00448 cheY-homologous receiver domain VI35_05230 SM00862 Transcriptional regulatory protein, C terminal VI35_05245 SM01236 VI35_05245 VI35_05300 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VI35_05300 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VI35_05360 SM00842 Cell division protein FtsA VI35_05380 SM00965 Secretin and TonB N terminus short domain VI35_05445 SM01150 VI35_05445 VI35_05465 SM00890 Domain of unknown function VI35_05495 SM01022 VI35_05495 VI35_05555 SM01400 VI35_05555 VI35_05580 SM00937 VI35_05580 VI35_05615 SM00986 Uracil DNA glycosylase superfamily VI35_05615 SM00987 UreE urease accessory protein, C-terminal domain VI35_05655 SM00732 Likely ribonuclease with RNase H fold. VI35_05680 SM00731 SprT homologues. VI35_05690 SM00861 Transketolase, pyrimidine binding domain VI35_05730 SM00363 S4 RNA-binding domain VI35_05735 SM00342 helix_turn_helix, arabinose operon control protein VI35_05745 SM00788 Adenylosuccinate synthetase VI35_05775 SM00822 VI35_05775 VI35_05790 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain VI35_05790 SM00437 Bacterial DNA topoisomerase I DNA-binding domain VI35_05790 SM00493 VI35_05790 VI35_05800 SM00091 PAS domain VI35_05800 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VI35_05820 SM00382 ATPases associated with a variety of cellular activities VI35_05825 SM00382 ATPases associated with a variety of cellular activities VI35_05850 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VI35_05895 SM00382 ATPases associated with a variety of cellular activities VI35_05955 SM00382 ATPases associated with a variety of cellular activities VI35_05955 SM00962 SRP54-type protein, GTPase domain VI35_05970 SM00448 cheY-homologous receiver domain VI35_05980 SM00073 Histidine Phosphotransfer domain VI35_05980 SM00260 Two component signalling adaptor domain VI35_05980 SM00387 Histidine kinase-like ATPases VI35_05980 SM01231 VI35_05980 VI35_05985 SM00448 cheY-homologous receiver domain VI35_06005 SM00260 Two component signalling adaptor domain VI35_06010 SM00260 Two component signalling adaptor domain VI35_06195 SM00345 helix_turn_helix gluconate operon transcriptional repressor VI35_06195 SM00895 VI35_06195 VI35_06265 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VI35_06265 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VI35_06350 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VI35_06360 SM00729 Elongator protein 3, MiaB family, Radical SAM VI35_06360 SM00876 Biotin and Thiamin Synthesis associated domain VI35_06540 SM01081 Putative carbohydrate binding domain VI35_06595 SM00347 helix_turn_helix multiple antibiotic resistance protein VI35_06690 SM00354 helix_turn _helix lactose operon repressor VI35_06715 SM00257 Lysin motif VI35_06720 SM00849 Metallo-beta-lactamase superfamily VI35_06735 SM00479 VI35_06735 VI35_06745 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VI35_06775 SM00897 FIST N domain VI35_06775 SM01204 VI35_06775 VI35_06780 SM00387 Histidine kinase-like ATPases VI35_06780 SM00388 His Kinase A (phosphoacceptor) domain VI35_06780 SM00448 cheY-homologous receiver domain VI35_06785 SM00464 Found in ATP-dependent protease La (LON) VI35_06795 SM00421 helix_turn_helix, Lux Regulon VI35_06795 SM00448 cheY-homologous receiver domain VI35_06800 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VI35_06800 SM00387 Histidine kinase-like ATPases VI35_06820 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VI35_06845 SM00852 Probable molybdopterin binding domain VI35_06910 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VI35_06910 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VI35_06930 SM00867 YceI-like domain VI35_06940 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain VI35_06950 SM00563 Phosphate acyltransferases VI35_06980 SM00052 Putative diguanylate phosphodiesterase VI35_06980 SM00267 diguanylate cyclase VI35_06985 SM00855 Phosphoglycerate mutase family VI35_06995 SM00387 Histidine kinase-like ATPases VI35_07015 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase VI35_07040 SM00871 Bacterial transcription activator, effector binding domain VI35_07065 SM00345 helix_turn_helix gluconate operon transcriptional repressor VI35_07130 SM00420 helix_turn_helix, Deoxyribose operon repressor VI35_07130 SM01134 VI35_07130 VI35_07155 SM00830 Chorismate mutase type II VI35_07295 SM00062 Bacterial periplasmic substrate-binding proteins VI35_07295 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VI35_07310 SM00382 ATPases associated with a variety of cellular activities VI35_07315 SM00062 Bacterial periplasmic substrate-binding proteins VI35_07315 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VI35_07340 SM00052 Putative diguanylate phosphodiesterase VI35_07340 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VI35_07340 SM00091 PAS domain VI35_07340 SM00267 diguanylate cyclase VI35_07390 SM00981 VI35_07390 VI35_07445 SM00858 VI35_07445 VI35_07510 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VI35_07510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VI35_07520 SM00478 endonuclease III VI35_07520 SM00525 VI35_07520 VI35_07530 SM00900 VI35_07530 VI35_07565 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VI35_07565 SM00091 PAS domain VI35_07565 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VI35_07630 SM00448 cheY-homologous receiver domain VI35_07630 SM00850 LytTr DNA-binding domain VI35_07635 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VI35_07670 SM00382 ATPases associated with a variety of cellular activities VI35_07675 SM00382 ATPases associated with a variety of cellular activities VI35_07685 SM01005 Alanine racemase, C-terminal domain VI35_07735 SM00671 Sel1-like repeats. VI35_07785 SM00530 Helix-turn-helix XRE-family like proteins VI35_07800 SM00530 Helix-turn-helix XRE-family like proteins VI35_07850 SM00507 HNH nucleases VI35_08070 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VI35_08070 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VI35_08210 SM00382 ATPases associated with a variety of cellular activities VI35_08280 SM00460 Transglutaminase/protease-like homologues VI35_08365 SM00671 Sel1-like repeats. VI35_08490 SM00257 Lysin motif VI35_08560 SM00382 ATPases associated with a variety of cellular activities VI35_08565 SM00382 ATPases associated with a variety of cellular activities VI35_08605 SM00493 VI35_08605 VI35_08615 SM00387 Histidine kinase-like ATPases VI35_08640 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VI35_08640 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VI35_08640 SM01049 VI35_08640 VI35_08695 SM00822 VI35_08695 VI35_08720 SM00382 ATPases associated with a variety of cellular activities VI35_08765 SM00893 Electron transfer flavoprotein domain VI35_08845 SM00497 Intron encoded nuclease repeat motif VI35_08875 SM00530 Helix-turn-helix XRE-family like proteins VI35_09070 SM00060 Fibronectin type 3 domain VI35_09125 SM00822 VI35_09125 VI35_09135 SM00829 Enoylreductase VI35_09155 SM00342 helix_turn_helix, arabinose operon control protein VI35_09160 SM00825 Beta-ketoacyl synthase VI35_09235 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VI35_09235 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VI35_09240 SM00382 ATPases associated with a variety of cellular activities VI35_09315 SM00062 Bacterial periplasmic substrate-binding proteins VI35_09340 SM01007 Class II Aldolase and Adducin N-terminal domain VI35_09355 SM00382 ATPases associated with a variety of cellular activities VI35_09365 SM00342 helix_turn_helix, arabinose operon control protein VI35_09420 SM00825 Beta-ketoacyl synthase VI35_09460 SM00861 Transketolase, pyrimidine binding domain VI35_09475 SM00881 CoA binding domain VI35_09505 SM00382 ATPases associated with a variety of cellular activities VI35_09515 SM00345 helix_turn_helix gluconate operon transcriptional repressor VI35_09515 SM00866 VI35_09515 VI35_09565 SM00859 Semialdehyde dehydrogenase, NAD binding domain VI35_09570 SM00357 Cold shock protein domain VI35_09580 SM00382 ATPases associated with a variety of cellular activities VI35_09580 SM01086 C-terminal, D2-small domain, of ClpB protein VI35_09585 SM00316 Ribosomal protein S1-like RNA-binding domain VI35_09605 SM00267 diguanylate cyclase VI35_09605 SM00448 cheY-homologous receiver domain VI35_09615 SM01002 Alanine dehydrogenase/PNT, C-terminal domain VI35_09615 SM01003 Alanine dehydrogenase/PNT, N-terminal domain VI35_09620 SM00344 helix_turn_helix ASNC type VI35_09665 SM00354 helix_turn _helix lactose operon repressor VI35_09675 SM00382 ATPases associated with a variety of cellular activities VI35_09680 SM00382 ATPases associated with a variety of cellular activities VI35_09740 SM00091 PAS domain VI35_09740 SM00382 ATPases associated with a variety of cellular activities VI35_09750 SM00267 diguanylate cyclase VI35_09750 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VI35_09760 SM00729 Elongator protein 3, MiaB family, Radical SAM VI35_09775 SM00642 Alpha-amylase domain VI35_09785 SM00116 Domain in cystathionine beta-synthase and other proteins. VI35_09785 SM01240 VI35_09785 VI35_09820 SM00347 helix_turn_helix multiple antibiotic resistance protein VI35_09825 SM00364 Leucine-rich repeats, bacterial type VI35_09825 SM00369 Leucine-rich repeats, typical (most populated) subfamily VI35_09840 SM00855 Phosphoglycerate mutase family VI35_09865 SM00487 DEAD-like helicases superfamily VI35_09865 SM00490 helicase superfamily c-terminal domain VI35_09865 SM00982 VI35_09865 VI35_09865 SM01058 CarD-like/TRCF domain VI35_09880 SM00382 ATPases associated with a variety of cellular activities VI35_09890 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VI35_09915 SM00382 ATPases associated with a variety of cellular activities VI35_09915 SM00994 ClpX C4-type zinc finger VI35_09915 SM01086 C-terminal, D2-small domain, of ClpB protein VI35_09920 SM00382 ATPases associated with a variety of cellular activities VI35_09920 SM00464 Found in ATP-dependent protease La (LON) VI35_09925 SM00411 bacterial (prokaryotic) histone like domain VI35_09935 SM00382 ATPases associated with a variety of cellular activities VI35_09990 SM00422 helix_turn_helix, mercury resistance VI35_10080 SM00382 ATPases associated with a variety of cellular activities VI35_10115 SM00267 diguanylate cyclase VI35_10130 SM00822 VI35_10130 VI35_10140 SM00342 helix_turn_helix, arabinose operon control protein VI35_10150 SM00518 AP endonuclease family 2 VI35_10180 SM00090 RIO-like kinase VI35_10190 SM00486 DNA polymerase type-B family VI35_10275 SM00347 helix_turn_helix multiple antibiotic resistance protein VI35_10365 SM00422 helix_turn_helix, mercury resistance VI35_10375 SM00052 Putative diguanylate phosphodiesterase VI35_10410 SM00327 von Willebrand factor (vWF) type A domain VI35_10445 SM01322 VI35_10445 VI35_10465 SM00382 ATPases associated with a variety of cellular activities VI35_10480 SM00237 Domains in Na-Ca exchangers and integrin-beta4 VI35_10490 SM00530 Helix-turn-helix XRE-family like proteins VI35_10525 SM00091 PAS domain VI35_10530 SM00448 cheY-homologous receiver domain VI35_10530 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VI35_10595 SM00341 Helicase and RNase D C-terminal VI35_10595 SM00474 3'-5' exonuclease VI35_10630 SM00382 ATPases associated with a variety of cellular activities VI35_10655 SM00421 helix_turn_helix, Lux Regulon VI35_10660 SM00116 Domain in cystathionine beta-synthase and other proteins. VI35_10665 SM00382 ATPases associated with a variety of cellular activities VI35_10665 SM00487 DEAD-like helicases superfamily VI35_10665 SM00490 helicase superfamily c-terminal domain VI35_10665 SM00847 Helicase associated domain (HA2) Add an annotation VI35_10685 SM00448 cheY-homologous receiver domain VI35_10685 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VI35_10695 SM00450 Rhodanese Homology Domain VI35_10715 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase VI35_10720 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VI35_10730 SM00880 VI35_10730 VI35_10760 SM00316 Ribosomal protein S1-like RNA-binding domain VI35_10765 SM00363 S4 RNA-binding domain VI35_10800 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. VI35_10805 SM00822 VI35_10805 VI35_10835 SM00382 ATPases associated with a variety of cellular activities VI35_10905 SM00382 ATPases associated with a variety of cellular activities VI35_10915 SM00981 VI35_10915 VI35_10945 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VI35_10945 SM00245 tail specific protease VI35_10950 SM00945 ProQ/FINO family VI35_11005 SM00100 Cyclic nucleotide-monophosphate binding domain VI35_11005 SM00419 helix_turn_helix, cAMP Regulatory protein VI35_11040 SM00382 ATPases associated with a variety of cellular activities VI35_11060 SM00354 helix_turn _helix lactose operon repressor VI35_11065 SM00267 diguanylate cyclase VI35_11090 SM00062 Bacterial periplasmic substrate-binding proteins VI35_11090 SM00387 Histidine kinase-like ATPases VI35_11090 SM00388 His Kinase A (phosphoacceptor) domain VI35_11090 SM00448 cheY-homologous receiver domain VI35_11100 SM00873 B3/4 domain VI35_11100 SM00874 tRNA synthetase B5 domain VI35_11100 SM00896 Ferredoxin-fold anticodon binding domain VI35_11125 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VI35_11135 SM00671 Sel1-like repeats. VI35_11145 SM00434 DNA Topoisomerase IV VI35_11175 SM00925 MltA specific insert domain VI35_11200 SM00354 helix_turn _helix lactose operon repressor VI35_11215 SM00953 VI35_11215 VI35_11220 SM00487 DEAD-like helicases superfamily VI35_11220 SM00490 helicase superfamily c-terminal domain VI35_11265 SM00495 Chitin-binding domain type 3 VI35_11275 SM00782 PhnA Zinc-Ribbon VI35_11420 SM00342 helix_turn_helix, arabinose operon control protein VI35_11440 SM01144 VI35_11440 VI35_11450 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. VI35_11460 SM00487 DEAD-like helicases superfamily VI35_11460 SM00490 helicase superfamily c-terminal domain VI35_11480 SM01118 VI35_11480 VI35_11635 SM00487 DEAD-like helicases superfamily VI35_11635 SM00490 helicase superfamily c-terminal domain VI35_11640 SM00763 PrkA AAA domain VI35_11655 SM00345 helix_turn_helix gluconate operon transcriptional repressor VI35_11700 SM00062 Bacterial periplasmic substrate-binding proteins VI35_11720 SM00448 cheY-homologous receiver domain VI35_11725 SM00387 Histidine kinase-like ATPases VI35_11735 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VI35_11735 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VI35_11735 SM01049 VI35_11735 VI35_11845 SM00116 Domain in cystathionine beta-synthase and other proteins. VI35_11875 SM00267 diguanylate cyclase VI35_11885 SM00052 Putative diguanylate phosphodiesterase VI35_11980 SM01154 VI35_11980 VI35_11995 SM00528 Domain in histone-like proteins of HNS family VI35_12020 SM01144 VI35_12020 VI35_12030 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family VI35_12035 SM00028 Tetratricopeptide repeats VI35_12045 SM00411 bacterial (prokaryotic) histone like domain VI35_12050 SM00316 Ribosomal protein S1-like RNA-binding domain VI35_12095 SM00052 Putative diguanylate phosphodiesterase VI35_12095 SM00267 diguanylate cyclase VI35_12110 SM00448 cheY-homologous receiver domain VI35_12115 SM00091 PAS domain VI35_12140 SM00360 RNA recognition motif VI35_12205 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region VI35_12255 SM00062 Bacterial periplasmic substrate-binding proteins VI35_12275 SM00564 beta-propeller repeat VI35_12295 SM00530 Helix-turn-helix XRE-family like proteins VI35_12300 SM00028 Tetratricopeptide repeats VI35_12310 SM00562 VI35_12310 VI35_12335 SM00271 DnaJ molecular chaperone homology domain VI35_12380 SM00028 Tetratricopeptide repeats VI35_12385 SM00450 Rhodanese Homology Domain VI35_12400 SM01323 VI35_12400 VI35_12415 SM00116 Domain in cystathionine beta-synthase and other proteins. VI35_12530 SM00857 Resolvase, N terminal domain VI35_12535 SM00052 Putative diguanylate phosphodiesterase VI35_12540 SM00530 Helix-turn-helix XRE-family like proteins VI35_12555 SM00857 Resolvase, N terminal domain VI35_12580 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VI35_12585 SM00479 VI35_12585 VI35_12605 SM00052 Putative diguanylate phosphodiesterase VI35_12605 SM00267 diguanylate cyclase VI35_12615 SM00487 DEAD-like helicases superfamily VI35_12615 SM00490 helicase superfamily c-terminal domain VI35_12645 SM01091 Transporter associated domain VI35_12655 SM00829 Enoylreductase VI35_12715 SM00267 diguanylate cyclase VI35_12720 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VI35_12720 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VI35_12720 SM00397 Helical region found in SNAREs VI35_12755 SM00342 helix_turn_helix, arabinose operon control protein VI35_12800 SM00859 Semialdehyde dehydrogenase, NAD binding domain VI35_12810 SM00014 Acid phosphatase homologues VI35_12905 SM00671 Sel1-like repeats. VI35_12910 SM00857 Resolvase, N terminal domain VI35_12920 SM00382 ATPases associated with a variety of cellular activities VI35_12970 SM00327 von Willebrand factor (vWF) type A domain VI35_12985 SM00052 Putative diguanylate phosphodiesterase VI35_12985 SM00267 diguanylate cyclase VI35_13005 SM00382 ATPases associated with a variety of cellular activities VI35_13010 SM00729 Elongator protein 3, MiaB family, Radical SAM VI35_13025 SM00382 ATPases associated with a variety of cellular activities VI35_13035 SM00062 Bacterial periplasmic substrate-binding proteins VI35_13060 SM01351 VI35_13060 VI35_13070 SM00487 DEAD-like helicases superfamily VI35_13070 SM00490 helicase superfamily c-terminal domain VI35_13100 SM00267 diguanylate cyclase VI35_13105 SM00917 LeuA allosteric (dimerisation) domain VI35_13115 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain VI35_13165 SM00062 Bacterial periplasmic substrate-binding proteins VI35_13190 SM00899 VI35_13190 VI35_13220 SM00062 Bacterial periplasmic substrate-binding proteins VI35_13255 SM00840 VI35_13255 VI35_13325 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VI35_13325 SM00465 GIY-YIG type nucleases (URI domain) VI35_13330 SM00421 helix_turn_helix, Lux Regulon VI35_13330 SM00448 cheY-homologous receiver domain VI35_13350 SM00382 ATPases associated with a variety of cellular activities VI35_13390 SM00491 VI35_13390 VI35_13415 SM00098 Alkaline phosphatase homologues VI35_13420 SM00098 Alkaline phosphatase homologues VI35_13445 SM00062 Bacterial periplasmic substrate-binding proteins VI35_13445 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VI35_13455 SM00382 ATPases associated with a variety of cellular activities VI35_13480 SM01091 Transporter associated domain VI35_13490 SM00382 ATPases associated with a variety of cellular activities VI35_13565 SM00091 PAS domain VI35_13565 SM00387 Histidine kinase-like ATPases VI35_13565 SM00388 His Kinase A (phosphoacceptor) domain VI35_13570 SM00382 ATPases associated with a variety of cellular activities VI35_13600 SM00116 Domain in cystathionine beta-synthase and other proteins. VI35_13600 SM00924 MgtE intracellular N domain VI35_13615 SM00047 Lysozyme subfamily 2 VI35_13660 SM00138 Methyltransferase, chemotaxis proteins VI35_13665 SM00260 Two component signalling adaptor domain VI35_13665 SM00448 cheY-homologous receiver domain VI35_13670 SM00858 VI35_13670 VI35_13700 SM00363 S4 RNA-binding domain VI35_13705 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VI35_13745 SM00357 Cold shock protein domain VI35_13755 SM00861 Transketolase, pyrimidine binding domain VI35_13780 SM00487 DEAD-like helicases superfamily VI35_13780 SM00490 helicase superfamily c-terminal domain VI35_13865 SM00116 Domain in cystathionine beta-synthase and other proteins. VI35_13875 SM00858 VI35_13875 VI35_13900 SM00448 cheY-homologous receiver domain VI35_13900 SM00862 Transcriptional regulatory protein, C terminal VI35_14000 SM00363 S4 RNA-binding domain VI35_14060 SM00530 Helix-turn-helix XRE-family like proteins VI35_14095 SM00062 Bacterial periplasmic substrate-binding proteins VI35_14100 SM00382 ATPases associated with a variety of cellular activities VI35_14175 SM00347 helix_turn_helix multiple antibiotic resistance protein VI35_14205 SM00028 Tetratricopeptide repeats VI35_14205 SM00448 cheY-homologous receiver domain VI35_14275 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VI35_14300 SM00354 helix_turn _helix lactose operon repressor VI35_14325 SM00271 DnaJ molecular chaperone homology domain VI35_14385 SM00528 Domain in histone-like proteins of HNS family VI35_14515 SM00919 Malic enzyme, NAD binding domain VI35_14515 SM01274 VI35_14515 VI35_14535 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VI35_14640 SM00448 cheY-homologous receiver domain VI35_14640 SM00862 Transcriptional regulatory protein, C terminal VI35_14660 SM00382 ATPases associated with a variety of cellular activities VI35_14695 SM00382 ATPases associated with a variety of cellular activities VI35_14760 SM00382 ATPases associated with a variety of cellular activities VI35_14795 SM00530 Helix-turn-helix XRE-family like proteins VI35_14845 SM00062 Bacterial periplasmic substrate-binding proteins VI35_14845 SM00091 PAS domain VI35_14845 SM00387 Histidine kinase-like ATPases VI35_14845 SM00388 His Kinase A (phosphoacceptor) domain VI35_14845 SM00448 cheY-homologous receiver domain VI35_14935 SM00155 Phospholipase D. Active site motifs. VI35_14990 SM01321 VI35_14990 VI35_15000 SM00028 Tetratricopeptide repeats VI35_15000 SM00386 HAT (Half-A-TPR) repeats VI35_15005 SM00729 Elongator protein 3, MiaB family, Radical SAM VI35_15035 SM00530 Helix-turn-helix XRE-family like proteins VI35_15060 SM00919 Malic enzyme, NAD binding domain VI35_15060 SM01274 VI35_15060 VI35_15065 SM00342 helix_turn_helix, arabinose operon control protein VI35_15080 SM00267 diguanylate cyclase VI35_15125 SM00382 ATPases associated with a variety of cellular activities VI35_15155 SM00382 ATPases associated with a variety of cellular activities VI35_15210 SM00448 cheY-homologous receiver domain VI35_15210 SM00862 Transcriptional regulatory protein, C terminal VI35_15225 SM00382 ATPases associated with a variety of cellular activities VI35_15260 SM00448 cheY-homologous receiver domain VI35_15270 SM00347 helix_turn_helix multiple antibiotic resistance protein VI35_15315 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VI35_15315 SM00292 breast cancer carboxy-terminal domain VI35_15315 SM00532 Ligase N family VI35_15320 SM00771 ZipA, C-terminal domain (FtsZ-binding) VI35_15355 SM00062 Bacterial periplasmic substrate-binding proteins VI35_15380 SM00642 Alpha-amylase domain VI35_15415 SM00267 diguanylate cyclase VI35_15420 SM00977 TilS substrate C-terminal domain VI35_15435 SM00382 ATPases associated with a variety of cellular activities VI35_15470 SM00481 DNA polymerase alpha chain like domain VI35_15500 SM00935 Outer membrane protein (OmpH-like) VI35_15510 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VI35_15555 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VI35_15635 SM00028 Tetratricopeptide repeats VI35_15655 SM01329 VI35_15655 VI35_15685 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VI35_15685 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VI35_15725 SM00900 VI35_15725 VI35_15840 SM00421 helix_turn_helix, Lux Regulon VI35_15930 SM00422 helix_turn_helix, mercury resistance VI35_15960 SM00830 Chorismate mutase type II VI35_15990 SM00382 ATPases associated with a variety of cellular activities VI35_16000 SM00028 Tetratricopeptide repeats VI35_16005 SM00112 Cadherin repeats. VI35_16005 SM00736 Dystroglycan-type cadherin-like domains. VI35_16025 SM00420 helix_turn_helix, Deoxyribose operon repressor VI35_16025 SM01134 VI35_16025 VI35_16040 SM01007 Class II Aldolase and Adducin N-terminal domain VI35_16095 SM00463 Small MutS-related domain VI35_16170 SM00052 Putative diguanylate phosphodiesterase VI35_16180 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VI35_16195 SM00387 Histidine kinase-like ATPases VI35_16195 SM00388 His Kinase A (phosphoacceptor) domain VI35_16200 SM00421 helix_turn_helix, Lux Regulon VI35_16200 SM00448 cheY-homologous receiver domain VI35_16220 SM00347 helix_turn_helix multiple antibiotic resistance protein VI35_16240 SM01005 Alanine racemase, C-terminal domain VI35_16245 SM00382 ATPases associated with a variety of cellular activities VI35_16255 SM00978 VI35_16255 VI35_16275 SM00028 Tetratricopeptide repeats VI35_16290 SM00320 WD40 repeats VI35_16315 SM00260 Two component signalling adaptor domain VI35_16315 SM00448 cheY-homologous receiver domain VI35_16325 SM00267 diguanylate cyclase VI35_16355 SM00100 Cyclic nucleotide-monophosphate binding domain VI35_16355 SM00419 helix_turn_helix, cAMP Regulatory protein VI35_16365 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins VI35_16365 SM00495 Chitin-binding domain type 3 VI35_16365 SM00636 VI35_16365 VI35_16420 SM00382 ATPases associated with a variety of cellular activities VI35_16445 SM01259 VI35_16445 VI35_16465 SM00382 ATPases associated with a variety of cellular activities VI35_16480 SM00271 DnaJ molecular chaperone homology domain VI35_16510 SM00650 Ribosomal RNA adenine dimethylases VI35_16525 SM00530 Helix-turn-helix XRE-family like proteins VI35_16570 SM00244 prohibitin homologues VI35_16575 SM00244 prohibitin homologues VI35_16595 SM00853 MutL C terminal dimerisation domain VI35_16595 SM01340 VI35_16595 VI35_16600 SM00257 Lysin motif VI35_16600 SM00646 VI35_16600 VI35_16630 SM00382 ATPases associated with a variety of cellular activities VI35_16630 SM00930 VI35_16630 VI35_16645 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. VI35_16650 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VI35_16650 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VI35_16655 SM00052 Putative diguanylate phosphodiesterase VI35_16655 SM00448 cheY-homologous receiver domain VI35_16670 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VI35_16675 SM00073 Histidine Phosphotransfer domain VI35_16675 SM00091 PAS domain VI35_16675 SM00387 Histidine kinase-like ATPases VI35_16675 SM00388 His Kinase A (phosphoacceptor) domain VI35_16675 SM00448 cheY-homologous receiver domain VI35_16720 SM01130 VI35_16720 VI35_16780 SM00014 Acid phosphatase homologues VI35_16790 SM00917 LeuA allosteric (dimerisation) domain VI35_16795 SM01329 VI35_16795 VI35_16830 SM00382 ATPases associated with a variety of cellular activities VI35_16915 SM00382 ATPases associated with a variety of cellular activities VI35_16960 SM00267 diguanylate cyclase VI35_16965 SM00487 DEAD-like helicases superfamily VI35_16965 SM00490 helicase superfamily c-terminal domain VI35_16975 SM00342 helix_turn_helix, arabinose operon control protein VI35_17000 SM00507 HNH nucleases VI35_17035 SM00347 helix_turn_helix multiple antibiotic resistance protein VI35_17060 SM00028 Tetratricopeptide repeats VI35_17060 SM00267 diguanylate cyclase VI35_17065 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VI35_17065 SM00267 diguanylate cyclase VI35_17075 SM00382 ATPases associated with a variety of cellular activities VI35_17120 SM00345 helix_turn_helix gluconate operon transcriptional repressor VI35_17170 SM00344 helix_turn_helix ASNC type VI35_17205 SM00342 helix_turn_helix, arabinose operon control protein VI35_17205 SM00871 Bacterial transcription activator, effector binding domain VI35_17230 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VI35_17245 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VI35_17245 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VI35_17385 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VI35_17400 SM00479 VI35_17400 VI35_17405 SM00822 VI35_17405 VI35_17450 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VI35_17455 SM00487 DEAD-like helicases superfamily VI35_17455 SM00490 helicase superfamily c-terminal domain VI35_17470 SM00642 Alpha-amylase domain VI35_17490 SM00028 Tetratricopeptide repeats VI35_17570 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VI35_17570 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VI35_17570 SM01049 VI35_17570 VI35_17585 SM00382 ATPases associated with a variety of cellular activities VI35_17635 SM00487 DEAD-like helicases superfamily VI35_17635 SM00490 helicase superfamily c-terminal domain VI35_17650 SM00052 Putative diguanylate phosphodiesterase VI35_17650 SM00267 diguanylate cyclase VI35_17665 SM00883 Chaperonin 10 Kd subunit VI35_17705 SM00829 Enoylreductase VI35_17780 SM00967 RNA 2'-O ribose methyltransferase substrate binding VI35_17785 SM00316 Ribosomal protein S1-like RNA-binding domain VI35_17785 SM00357 Cold shock protein domain VI35_17785 SM00955 VI35_17785 VI35_17790 SM00267 diguanylate cyclase VI35_17805 SM00938 Nitrogen regulatory protein P-II VI35_17870 SM00904 Riboflavin kinase VI35_17885 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VI35_17925 SM00927 DNA mismatch repair enzyme MutH VI35_17955 SM00382 ATPases associated with a variety of cellular activities VI35_17955 SM00962 SRP54-type protein, GTPase domain VI35_17955 SM00963 SRP54-type protein, helical bundle domain VI35_17965 SM01091 Transporter associated domain VI35_17980 SM00671 Sel1-like repeats. VI35_18005 SM00062 Bacterial periplasmic substrate-binding proteins VI35_18005 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VI35_18010 SM00382 ATPases associated with a variety of cellular activities VI35_18025 SM00382 ATPases associated with a variety of cellular activities VI35_18040 SM00938 Nitrogen regulatory protein P-II VI35_18115 SM01152 VI35_18115 VI35_18135 SM00382 ATPases associated with a variety of cellular activities VI35_18150 SM00487 DEAD-like helicases superfamily VI35_18150 SM00490 helicase superfamily c-terminal domain VI35_18270 SM00411 bacterial (prokaryotic) histone like domain VI35_18285 SM00382 ATPases associated with a variety of cellular activities VI35_18310 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VI35_18310 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VI35_18310 SM00091 PAS domain VI35_18310 SM00267 diguanylate cyclase VI35_18325 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain VI35_18330 SM01133 VI35_18330 VI35_18410 SM01091 Transporter associated domain VI35_18465 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VI35_18475 SM00382 ATPases associated with a variety of cellular activities VI35_18490 SM00533 DNA-binding domain of DNA mismatch repair MUTS family VI35_18490 SM00534 ATPase domain of DNA mismatch repair MUTS family VI35_18505 SM00347 helix_turn_helix multiple antibiotic resistance protein VI35_18545 SM00382 ATPases associated with a variety of cellular activities VI35_18565 SM00986 Uracil DNA glycosylase superfamily VI35_18565 SM00987 UreE urease accessory protein, C-terminal domain VI35_18575 SM00465 GIY-YIG type nucleases (URI domain) VI35_18595 SM00563 Phosphate acyltransferases VI35_18630 SM00271 DnaJ molecular chaperone homology domain VI35_18680 SM00434 DNA Topoisomerase IV VI35_18685 SM00387 Histidine kinase-like ATPases VI35_18685 SM00433 TopoisomeraseII VI35_18760 SM00421 helix_turn_helix, Lux Regulon VI35_18775 SM00357 Cold shock protein domain VI35_18775 SM00955 VI35_18775 VI35_18835 SM00487 DEAD-like helicases superfamily VI35_18835 SM00490 helicase superfamily c-terminal domain VI35_18990 SM00642 Alpha-amylase domain VI35_19005 SM00344 helix_turn_helix ASNC type VI35_19025 SM00852 Probable molybdopterin binding domain VI35_19090 SM01219 VI35_19090 VI35_19185 SM00267 diguanylate cyclase VI35_19270 SM00448 cheY-homologous receiver domain VI35_19270 SM00862 Transcriptional regulatory protein, C terminal VI35_19290 SM01018 B12 binding domain VI35_19325 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VI35_19325 SM00091 PAS domain VI35_19335 SM00331 Sigma factor PP2C-like phosphatases VI35_19335 SM00387 Histidine kinase-like ATPases VI35_19345 SM00448 cheY-homologous receiver domain VI35_19345 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VI35_19475 SM00965 Secretin and TonB N terminus short domain VI35_19505 SM00052 Putative diguanylate phosphodiesterase VI35_19505 SM00267 diguanylate cyclase VI35_19510 SM00052 Putative diguanylate phosphodiesterase VI35_19540 SM00345 helix_turn_helix gluconate operon transcriptional repressor VI35_19540 SM00866 VI35_19540 VI35_19545 SM00947 Carbonic anhydrase VI35_19560 SM00382 ATPases associated with a variety of cellular activities VI35_19565 SM00382 ATPases associated with a variety of cellular activities VI35_19565 SM00962 SRP54-type protein, GTPase domain VI35_19565 SM00963 SRP54-type protein, helical bundle domain VI35_19595 SM00155 Phospholipase D. Active site motifs. VI35_19600 SM00062 Bacterial periplasmic substrate-binding proteins VI35_19690 SM00822 VI35_19690 VI35_19765 SM00662 RNA polymerases D VI35_19770 SM00363 S4 RNA-binding domain VI35_19770 SM01390 VI35_19770 VI35_19840 SM01374 VI35_19840 VI35_19860 SM00322 K homology RNA-binding domain VI35_19875 SM01382 VI35_19875 VI35_19875 SM01383 VI35_19875 VI35_19895 SM01403 VI35_19895 VI35_19905 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VI35_19905 SM00387 Histidine kinase-like ATPases VI35_19905 SM00388 His Kinase A (phosphoacceptor) domain VI35_19910 SM00448 cheY-homologous receiver domain VI35_19910 SM00862 Transcriptional regulatory protein, C terminal VI35_19920 SM00316 Ribosomal protein S1-like RNA-binding domain VI35_19920 SM00732 Likely ribonuclease with RNase H fold. VI35_19960 SM00450 Rhodanese Homology Domain VI35_19990 SM00342 helix_turn_helix, arabinose operon control protein VI35_20055 SM01230 VI35_20055 VI35_20065 SM00091 PAS domain VI35_20065 SM00387 Histidine kinase-like ATPases VI35_20065 SM00388 His Kinase A (phosphoacceptor) domain VI35_20080 SM00729 Elongator protein 3, MiaB family, Radical SAM VI35_20135 SM00257 Lysin motif VI35_20210 SM00530 Helix-turn-helix XRE-family like proteins VI35_20225 SM00342 helix_turn_helix, arabinose operon control protein VI35_20260 SM00326 Src homology 3 domains VI35_20310 SM00382 ATPases associated with a variety of cellular activities VI35_20330 SM00829 Enoylreductase VI35_20380 SM01038 Beta galactosidase small chain VI35_20385 SM00354 helix_turn _helix lactose operon repressor VI35_20430 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs VI35_20430 SM00474 3'-5' exonuclease VI35_20430 SM00475 5'-3' exonuclease VI35_20430 SM00482 DNA polymerase A domain VI35_20460 SM00448 cheY-homologous receiver domain VI35_20460 SM00862 Transcriptional regulatory protein, C terminal VI35_20465 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VI35_20465 SM00387 Histidine kinase-like ATPases VI35_20465 SM00388 His Kinase A (phosphoacceptor) domain VI35_20495 SM00563 Phosphate acyltransferases VI35_20595 SM00829 Enoylreductase VI35_20605 SM00052 Putative diguanylate phosphodiesterase VI35_20605 SM00267 diguanylate cyclase VI35_20690 SM00448 cheY-homologous receiver domain VI35_20690 SM00862 Transcriptional regulatory protein, C terminal VI35_20695 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VI35_20695 SM00387 Histidine kinase-like ATPases VI35_20695 SM00388 His Kinase A (phosphoacceptor) domain VI35_20770 SM00836 DALR anticodon binding domain VI35_20780 SM00052 Putative diguanylate phosphodiesterase VI35_20835 SM00849 Metallo-beta-lactamase superfamily VI35_20840 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VI35_20840 SM00382 ATPases associated with a variety of cellular activities VI35_20845 SM00354 helix_turn _helix lactose operon repressor VI35_20865 SM00382 ATPases associated with a variety of cellular activities VI35_20870 SM00382 ATPases associated with a variety of cellular activities VI35_20885 SM00450 Rhodanese Homology Domain VI35_20925 SM00357 Cold shock protein domain VI35_20925 SM00382 ATPases associated with a variety of cellular activities VI35_20925 SM00959 Rho termination factor, N-terminal domain VI35_20955 SM00052 Putative diguanylate phosphodiesterase VI35_20955 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VI35_20955 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VI35_20955 SM00091 PAS domain VI35_20955 SM00267 diguanylate cyclase VI35_20965 SM01004 Delta-aminolevulinic acid dehydratase VI35_21070 SM00421 helix_turn_helix, Lux Regulon VI35_21080 SM00420 helix_turn_helix, Deoxyribose operon repressor VI35_21080 SM01134 VI35_21080 VI35_21085 SM00448 cheY-homologous receiver domain VI35_21085 SM00862 Transcriptional regulatory protein, C terminal VI35_21115 SM00382 ATPases associated with a variety of cellular activities VI35_21155 SM00470 ParB-like nuclease domain VI35_21170 SM01228 VI35_21170 VI35_21185 SM00382 ATPases associated with a variety of cellular activities VI35_21190 SM00382 ATPases associated with a variety of cellular activities VI35_21215 SM01234 VI35_21215 VI35_21230 SM00382 ATPases associated with a variety of cellular activities VI35_21240 SM00062 Bacterial periplasmic substrate-binding proteins