VI35_20075 94e22fddd16285852f62bb0a83f8b569 333 Gene3D G3DSA:3.20.20.140 2 333 1.6E-101 T 17-10-2018 VI35_20075 94e22fddd16285852f62bb0a83f8b569 333 Hamap MF_00540 Adenosine deaminase [add]. 1 331 53.535 T 17-10-2018 IPR028893 Adenosine deaminase GO:0004000|GO:0009168 KEGG: 00230+3.5.4.4|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-74217 VI35_20075 94e22fddd16285852f62bb0a83f8b569 333 SUPERFAMILY SSF51556 4 325 6.81E-78 T 17-10-2018 IPR032466 Metal-dependent hydrolase VI35_20075 94e22fddd16285852f62bb0a83f8b569 333 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 6 329 1.6E-115 T 17-10-2018 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 VI35_20075 94e22fddd16285852f62bb0a83f8b569 333 Pfam PF00962 Adenosine/AMP deaminase 6 326 6.4E-92 T 17-10-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 VI35_03830 e1febe95db109459fb316f64c6ecb632 105 SUPERFAMILY SSF47781 31 104 9.0E-32 T 17-10-2018 IPR010994 RuvA domain 2-like VI35_03830 e1febe95db109459fb316f64c6ecb632 105 Gene3D G3DSA:1.10.150.320 25 102 2.6E-23 T 17-10-2018 VI35_03830 e1febe95db109459fb316f64c6ecb632 105 Pfam PF12836 Helix-hairpin-helix motif 41 102 1.3E-23 T 17-10-2018 VI35_03830 e1febe95db109459fb316f64c6ecb632 105 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 41 104 2.6E-23 T 17-10-2018 IPR004509 Competence protein ComEA, helix-hairpin-helix domain VI35_03830 e1febe95db109459fb316f64c6ecb632 105 SMART SM00278 82 101 32.0 T 17-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 VI35_03830 e1febe95db109459fb316f64c6ecb632 105 SMART SM00278 52 71 0.0014 T 17-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 VI35_07195 35920cccbcbbb746008782813c3b3e9b 722 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 39 719 2.0E-105 T 17-10-2018 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0015232|GO:0015886|GO:0019867 VI35_07195 35920cccbcbbb746008782813c3b3e9b 722 SUPERFAMILY SSF56935 38 719 4.89E-107 T 17-10-2018 VI35_07195 35920cccbcbbb746008782813c3b3e9b 722 Gene3D G3DSA:2.40.170.20 180 719 1.4E-77 T 17-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VI35_07195 35920cccbcbbb746008782813c3b3e9b 722 Pfam PF00593 TonB dependent receptor 244 718 1.0E-46 T 17-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel VI35_07195 35920cccbcbbb746008782813c3b3e9b 722 Pfam PF07715 TonB-dependent Receptor Plug Domain 52 161 1.3E-24 T 17-10-2018 IPR012910 TonB-dependent receptor, plug domain VI35_07195 35920cccbcbbb746008782813c3b3e9b 722 Gene3D G3DSA:2.170.130.10 38 166 3.3E-31 T 17-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily VI35_07195 35920cccbcbbb746008782813c3b3e9b 722 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 46 - T 17-10-2018 IPR010916 TonB box, conserved site VI35_07195 35920cccbcbbb746008782813c3b3e9b 722 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 40 719 2.3E-102 T 17-10-2018 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0019867|GO:0022857|GO:0055085 VI35_06255 93ea5c785ff334b9bf82884e8b625940 98 PIRSF PIRSF037266 1 98 2.4E-39 T 17-10-2018 IPR017162 Uncharacterised conserved protein UCP037266 VI35_06255 93ea5c785ff334b9bf82884e8b625940 98 Pfam PF09904 Winged helix-turn helix 6 95 4.3E-40 T 17-10-2018 IPR017162 Uncharacterised conserved protein UCP037266 VI35_06255 93ea5c785ff334b9bf82884e8b625940 98 Gene3D G3DSA:1.10.10.10 1 98 1.4E-40 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_17585 9a7e629aedb9e20e208fb7e119ffd594 355 Pfam PF00005 ABC transporter 18 164 6.1E-37 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_17585 9a7e629aedb9e20e208fb7e119ffd594 355 SMART SM00382 27 214 7.9E-20 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_17585 9a7e629aedb9e20e208fb7e119ffd594 355 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 241 4.6E-118 T 17-10-2018 IPR005666 Sulphate transport system permease protein 1 GO:0008272|GO:0015419|GO:0016020|GO:0043190 KEGG: 00920+3.6.3.25 VI35_17585 9a7e629aedb9e20e208fb7e119ffd594 355 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_17585 9a7e629aedb9e20e208fb7e119ffd594 355 Pfam PF12857 TOBE-like domain 289 345 4.9E-10 T 17-10-2018 IPR024765 TOBE-like domain KEGG: 00920+3.6.3.25 VI35_17585 9a7e629aedb9e20e208fb7e119ffd594 355 SUPERFAMILY SSF50331 240 345 4.65E-10 T 17-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal VI35_17585 9a7e629aedb9e20e208fb7e119ffd594 355 Gene3D G3DSA:3.40.50.300 2 251 1.2E-79 T 17-10-2018 VI35_17585 9a7e629aedb9e20e208fb7e119ffd594 355 SUPERFAMILY SSF52540 3 246 6.25E-88 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_11085 ae5876908a4871e6ffa6df666130107b 416 Pfam PF00072 Response regulator receiver domain 120 234 6.3E-8 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_11085 ae5876908a4871e6ffa6df666130107b 416 SUPERFAMILY SSF52172 119 240 3.98E-14 T 17-10-2018 IPR011006 CheY-like superfamily VI35_11085 ae5876908a4871e6ffa6df666130107b 416 Gene3D G3DSA:3.40.50.2300 115 238 7.8E-13 T 17-10-2018 VI35_08135 be4207c07e452d432bece397eeda4f44 210 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 41 195 5.0E-67 T 17-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 VI35_08135 be4207c07e452d432bece397eeda4f44 210 Gene3D G3DSA:3.30.1060.10 1 210 1.2E-89 T 17-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 VI35_08135 be4207c07e452d432bece397eeda4f44 210 Pfam PF01625 Peptide methionine sulfoxide reductase 42 195 6.3E-66 T 17-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 VI35_08135 be4207c07e452d432bece397eeda4f44 210 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 39 201 38.661 T 17-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 VI35_08135 be4207c07e452d432bece397eeda4f44 210 SUPERFAMILY SSF55068 4 204 1.44E-81 T 17-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 VI35_00220 eabb5839142b63e1635ff937ec1640eb 337 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 12 21 - T 17-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_00220 eabb5839142b63e1635ff937ec1640eb 337 Gene3D G3DSA:3.40.50.620 6 325 2.3E-101 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_00220 eabb5839142b63e1635ff937ec1640eb 337 Gene3D G3DSA:1.10.240.10 184 298 2.3E-101 T 17-10-2018 VI35_00220 eabb5839142b63e1635ff937ec1640eb 337 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 16 32 8.5E-20 T 17-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 VI35_00220 eabb5839142b63e1635ff937ec1640eb 337 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 67 86 8.5E-20 T 17-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 VI35_00220 eabb5839142b63e1635ff937ec1640eb 337 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 197 207 8.5E-20 T 17-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 VI35_00220 eabb5839142b63e1635ff937ec1640eb 337 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 145 166 8.5E-20 T 17-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 VI35_00220 eabb5839142b63e1635ff937ec1640eb 337 SUPERFAMILY SSF52374 5 330 1.11E-76 T 17-10-2018 VI35_00220 eabb5839142b63e1635ff937ec1640eb 337 Pfam PF00579 tRNA synthetases class I (W and Y) 4 285 2.4E-50 T 17-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_00220 eabb5839142b63e1635ff937ec1640eb 337 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 3 330 1.1E-67 T 17-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 VI35_06810 c0f127f09c8c10877b54f39fa2d86628 169 Pfam PF13187 4Fe-4S dicluster domain 39 82 1.4E-6 T 17-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VI35_06810 c0f127f09c8c10877b54f39fa2d86628 169 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 143 154 - T 17-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VI35_06810 c0f127f09c8c10877b54f39fa2d86628 169 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 39 50 - T 17-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VI35_06810 c0f127f09c8c10877b54f39fa2d86628 169 TIGRFAM TIGR00402 napF: ferredoxin-type protein NapF 9 158 3.6E-45 T 17-10-2018 IPR004496 Ferredoxin-type protein NapF GO:0051539 VI35_06810 c0f127f09c8c10877b54f39fa2d86628 169 Hamap MF_02201 Ferredoxin-type protein NapF [napF]. 27 164 23.493 T 17-10-2018 IPR004496 Ferredoxin-type protein NapF GO:0051539 VI35_06810 c0f127f09c8c10877b54f39fa2d86628 169 Gene3D G3DSA:3.30.70.20 100 161 3.3E-9 T 17-10-2018 VI35_06810 c0f127f09c8c10877b54f39fa2d86628 169 Pfam PF12838 4Fe-4S dicluster domain 112 156 1.7E-8 T 17-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VI35_06810 c0f127f09c8c10877b54f39fa2d86628 169 SUPERFAMILY SSF46548 29 160 9.42E-20 T 17-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VI35_06810 c0f127f09c8c10877b54f39fa2d86628 169 Gene3D G3DSA:3.30.70.20 34 86 1.2E-7 T 17-10-2018 VI35_00460 d865805da79c7a1c2865d6416560d723 365 Gene3D G3DSA:3.40.50.2000 164 344 2.4E-54 T 17-10-2018 VI35_00460 d865805da79c7a1c2865d6416560d723 365 SUPERFAMILY SSF53756 1 340 4.54E-97 T 17-10-2018 VI35_00460 d865805da79c7a1c2865d6416560d723 365 TIGRFAM TIGR02195 heptsyl_trn_II: lipopolysaccharide heptosyltransferase II 2 340 4.4E-146 T 17-10-2018 IPR011910 ADP-heptose--LPS heptosyltransferase 2 GO:0009103|GO:0016757 VI35_00460 d865805da79c7a1c2865d6416560d723 365 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 69 322 2.0E-71 T 17-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 VI35_00460 d865805da79c7a1c2865d6416560d723 365 Gene3D G3DSA:3.40.50.2000 1 150 2.5E-55 T 17-10-2018 VI35_14375 cdcb3466efad7467daa53bb448b47ffa 268 Gene3D G3DSA:3.40.50.80 132 267 1.5E-34 T 17-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VI35_14375 cdcb3466efad7467daa53bb448b47ffa 268 Gene3D G3DSA:2.40.30.10 3 129 5.3E-36 T 17-10-2018 VI35_14375 cdcb3466efad7467daa53bb448b47ffa 268 Pfam PF08021 Siderophore-interacting FAD-binding domain 14 129 4.9E-37 T 17-10-2018 IPR013113 FAD-binding 9, siderophore-interacting VI35_14375 cdcb3466efad7467daa53bb448b47ffa 268 SUPERFAMILY SSF63380 5 132 1.51E-14 T 17-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VI35_14375 cdcb3466efad7467daa53bb448b47ffa 268 Pfam PF04954 Siderophore-interacting protein 136 252 1.4E-28 T 17-10-2018 IPR007037 Siderophore-interacting protein, C-terminal domain VI35_12220 38150841df282c91f26c004f37385ba0 180 SUPERFAMILY SSF54862 33 154 2.89E-27 T 17-10-2018 VI35_12220 38150841df282c91f26c004f37385ba0 180 Gene3D G3DSA:3.30.70.3270 33 172 4.9E-42 T 17-10-2018 VI35_12220 38150841df282c91f26c004f37385ba0 180 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 99 110 - T 17-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VI35_12220 38150841df282c91f26c004f37385ba0 180 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 60 71 - T 17-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VI35_12220 38150841df282c91f26c004f37385ba0 180 Pfam PF12838 4Fe-4S dicluster domain 59 113 3.6E-12 T 17-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VI35_12220 38150841df282c91f26c004f37385ba0 180 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 2 152 27.451 T 17-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12220 38150841df282c91f26c004f37385ba0 180 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 16 137 4.6E-50 T 17-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_21050 8e1f29628a3a7ca522b51fa9bf43b595 133 Pfam PF02472 Biopolymer transport protein ExbD/TolR 8 132 3.7E-35 T 17-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 VI35_21050 8e1f29628a3a7ca522b51fa9bf43b595 133 Gene3D G3DSA:3.30.420.270 60 128 4.8E-15 T 17-10-2018 VI35_20805 eae025247a267d734d9e594be8c89cc5 404 PRINTS PR00166 Aromatic amino acid permease signature 144 164 2.1E-82 T 17-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VI35_20805 eae025247a267d734d9e594be8c89cc5 404 PRINTS PR00166 Aromatic amino acid permease signature 220 239 2.1E-82 T 17-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VI35_20805 eae025247a267d734d9e594be8c89cc5 404 PRINTS PR00166 Aromatic amino acid permease signature 336 355 2.1E-82 T 17-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VI35_20805 eae025247a267d734d9e594be8c89cc5 404 PRINTS PR00166 Aromatic amino acid permease signature 39 58 2.1E-82 T 17-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VI35_20805 eae025247a267d734d9e594be8c89cc5 404 PRINTS PR00166 Aromatic amino acid permease signature 315 333 2.1E-82 T 17-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VI35_20805 eae025247a267d734d9e594be8c89cc5 404 PRINTS PR00166 Aromatic amino acid permease signature 182 204 2.1E-82 T 17-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VI35_20805 eae025247a267d734d9e594be8c89cc5 404 PRINTS PR00166 Aromatic amino acid permease signature 281 300 2.1E-82 T 17-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VI35_20805 eae025247a267d734d9e594be8c89cc5 404 PRINTS PR00166 Aromatic amino acid permease signature 84 104 2.1E-82 T 17-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VI35_20805 eae025247a267d734d9e594be8c89cc5 404 PRINTS PR00166 Aromatic amino acid permease signature 12 35 2.1E-82 T 17-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VI35_20805 eae025247a267d734d9e594be8c89cc5 404 TIGRFAM TIGR00837 araaP: aromatic amino acid transport protein 9 384 1.2E-130 T 17-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VI35_20805 eae025247a267d734d9e594be8c89cc5 404 Pfam PF03222 Tryptophan/tyrosine permease family 4 391 1.3E-127 T 17-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 VI35_16755 b085bd292b43e0c103acd4947136562f 164 Pfam PF10369 Small subunit of acetolactate synthase 84 157 1.8E-23 T 17-10-2018 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 VI35_16755 b085bd292b43e0c103acd4947136562f 164 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 1 158 1.7E-64 T 17-10-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 VI35_16755 b085bd292b43e0c103acd4947136562f 164 SUPERFAMILY SSF55021 79 162 1.34E-24 T 17-10-2018 VI35_16755 b085bd292b43e0c103acd4947136562f 164 Gene3D G3DSA:3.30.70.1150 80 157 2.7E-25 T 17-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal VI35_16755 b085bd292b43e0c103acd4947136562f 164 SUPERFAMILY SSF55021 2 76 1.04E-23 T 17-10-2018 VI35_16755 b085bd292b43e0c103acd4947136562f 164 Gene3D G3DSA:3.30.70.260 1 78 7.3E-36 T 17-10-2018 VI35_16755 b085bd292b43e0c103acd4947136562f 164 Pfam PF13710 ACT domain 12 73 7.4E-16 T 17-10-2018 VI35_16755 b085bd292b43e0c103acd4947136562f 164 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 1 76 3.0E-32 T 17-10-2018 VI35_03180 43a77ae3ffece5f3bc21c3c89e02ffca 259 ProSitePatterns PS00893 Nudix box signature. 165 186 - T 17-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 VI35_03180 43a77ae3ffece5f3bc21c3c89e02ffca 259 SUPERFAMILY SSF55811 3 100 8.51E-18 T 17-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VI35_03180 43a77ae3ffece5f3bc21c3c89e02ffca 259 Gene3D G3DSA:3.90.79.20 1 128 7.5E-31 T 17-10-2018 VI35_03180 43a77ae3ffece5f3bc21c3c89e02ffca 259 Gene3D G3DSA:3.90.79.10 129 259 1.1E-37 T 17-10-2018 VI35_03180 43a77ae3ffece5f3bc21c3c89e02ffca 259 SUPERFAMILY SSF55811 83 249 2.57E-36 T 17-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VI35_03180 43a77ae3ffece5f3bc21c3c89e02ffca 259 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 97 127 3.9E-9 T 17-10-2018 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 VI35_03180 43a77ae3ffece5f3bc21c3c89e02ffca 259 Pfam PF00293 NUDIX domain 133 251 7.6E-15 T 17-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 VI35_15865 7f344b8649becc56964f0d6a5ae0cfb0 339 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 54 61 2.6E-6 T 17-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VI35_15865 7f344b8649becc56964f0d6a5ae0cfb0 339 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 111 130 2.6E-6 T 17-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VI35_15865 7f344b8649becc56964f0d6a5ae0cfb0 339 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 205 213 2.6E-6 T 17-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VI35_15865 7f344b8649becc56964f0d6a5ae0cfb0 339 SUPERFAMILY SSF63380 6 102 3.57E-24 T 17-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VI35_15865 7f344b8649becc56964f0d6a5ae0cfb0 339 Gene3D G3DSA:2.40.30.10 4 101 1.1E-22 T 17-10-2018 VI35_15865 7f344b8649becc56964f0d6a5ae0cfb0 339 Pfam PF00970 Oxidoreductase FAD-binding domain 14 101 8.3E-10 T 17-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 VI35_15865 7f344b8649becc56964f0d6a5ae0cfb0 339 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 263 331 4.0E-7 T 17-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 VI35_15865 7f344b8649becc56964f0d6a5ae0cfb0 339 Pfam PF00175 Oxidoreductase NAD-binding domain 112 219 4.9E-14 T 17-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 VI35_15865 7f344b8649becc56964f0d6a5ae0cfb0 339 SUPERFAMILY SSF54292 228 338 1.17E-21 T 17-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 VI35_15865 7f344b8649becc56964f0d6a5ae0cfb0 339 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 290 298 - T 17-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 VI35_15865 7f344b8649becc56964f0d6a5ae0cfb0 339 SUPERFAMILY SSF52343 91 235 1.13E-34 T 17-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VI35_15865 7f344b8649becc56964f0d6a5ae0cfb0 339 Gene3D G3DSA:3.40.50.80 107 242 1.4E-31 T 17-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VI35_15865 7f344b8649becc56964f0d6a5ae0cfb0 339 PRINTS PR00410 Phenol hydroxylase reductase family signature 54 61 1.3E-9 T 17-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VI35_15865 7f344b8649becc56964f0d6a5ae0cfb0 339 PRINTS PR00410 Phenol hydroxylase reductase family signature 111 130 1.3E-9 T 17-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VI35_15865 7f344b8649becc56964f0d6a5ae0cfb0 339 PRINTS PR00410 Phenol hydroxylase reductase family signature 95 104 1.3E-9 T 17-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VI35_15865 7f344b8649becc56964f0d6a5ae0cfb0 339 PRINTS PR00410 Phenol hydroxylase reductase family signature 205 213 1.3E-9 T 17-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VI35_15865 7f344b8649becc56964f0d6a5ae0cfb0 339 Gene3D G3DSA:3.10.20.30 243 339 8.7E-17 T 17-10-2018 IPR012675 Beta-grasp domain superfamily VI35_02440 e0c52501b94d24f651f9735a77e2350b 123 Pfam PF02152 Dihydroneopterin aldolase 4 112 1.8E-29 T 17-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 VI35_02440 e0c52501b94d24f651f9735a77e2350b 123 Gene3D G3DSA:3.30.1130.10 1 117 1.9E-39 T 17-10-2018 VI35_02440 e0c52501b94d24f651f9735a77e2350b 123 SUPERFAMILY SSF55620 1 116 2.06E-34 T 17-10-2018 VI35_02440 e0c52501b94d24f651f9735a77e2350b 123 SMART SM00905 4 114 1.8E-46 T 17-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 VI35_02440 e0c52501b94d24f651f9735a77e2350b 123 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 2 113 3.1E-26 T 17-10-2018 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 VI35_02440 e0c52501b94d24f651f9735a77e2350b 123 TIGRFAM TIGR00526 folB_dom: FolB domain 1 116 1.7E-33 T 17-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 VI35_21040 3b3a27c7fdfc1622692b0ef6fd2f491d 372 Gene3D G3DSA:1.25.40.10 154 313 2.8E-7 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_21040 3b3a27c7fdfc1622692b0ef6fd2f491d 372 SUPERFAMILY SSF48452 45 214 5.36E-8 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_21040 3b3a27c7fdfc1622692b0ef6fd2f491d 372 Gene3D G3DSA:1.25.40.10 12 153 1.2E-8 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_11060 ce363c53e6f82053c3db539a29e59648 341 SUPERFAMILY SSF53822 61 332 1.07E-94 T 17-10-2018 IPR028082 Periplasmic binding protein-like I VI35_11060 ce363c53e6f82053c3db539a29e59648 341 Gene3D G3DSA:1.10.260.40 3 59 1.5E-22 T 17-10-2018 VI35_11060 ce363c53e6f82053c3db539a29e59648 341 SUPERFAMILY SSF47413 1 59 8.13E-17 T 17-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VI35_11060 ce363c53e6f82053c3db539a29e59648 341 Pfam PF13377 Periplasmic binding protein-like domain 169 330 7.6E-46 T 17-10-2018 VI35_11060 ce363c53e6f82053c3db539a29e59648 341 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 17-10-2018 VI35_11060 ce363c53e6f82053c3db539a29e59648 341 Gene3D G3DSA:3.40.50.2300 69 322 1.1E-90 T 17-10-2018 VI35_11060 ce363c53e6f82053c3db539a29e59648 341 Gene3D G3DSA:3.40.50.2300 161 290 1.1E-90 T 17-10-2018 VI35_11060 ce363c53e6f82053c3db539a29e59648 341 SMART SM00354 1 71 1.9E-36 T 17-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VI35_11060 ce363c53e6f82053c3db539a29e59648 341 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 1.1E-19 T 17-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VI35_09320 31bcec64294d3944709a33d7e33da3d8 271 SUPERFAMILY SSF56317 1 265 1.96E-74 T 17-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily VI35_09320 31bcec64294d3944709a33d7e33da3d8 271 Pfam PF00795 Carbon-nitrogen hydrolase 5 253 1.2E-47 T 17-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 VI35_09320 31bcec64294d3944709a33d7e33da3d8 271 Gene3D G3DSA:3.60.110.10 1 269 2.4E-81 T 17-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily VI35_17490 2ff256a234e15f863865dbfef11f7d89 1146 SUPERFAMILY SSF48452 67 325 1.79E-6 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_17490 2ff256a234e15f863865dbfef11f7d89 1146 Pfam PF14559 Tetratricopeptide repeat 608 655 4.4E-6 T 17-10-2018 VI35_17490 2ff256a234e15f863865dbfef11f7d89 1146 Gene3D G3DSA:1.25.40.10 43 225 1.9E-7 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_17490 2ff256a234e15f863865dbfef11f7d89 1146 Gene3D G3DSA:1.25.40.10 346 442 1.6E-11 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_17490 2ff256a234e15f863865dbfef11f7d89 1146 Gene3D G3DSA:1.25.40.10 457 723 4.3E-12 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_17490 2ff256a234e15f863865dbfef11f7d89 1146 Pfam PF13432 Tetratricopeptide repeat 353 412 3.8E-9 T 17-10-2018 VI35_17490 2ff256a234e15f863865dbfef11f7d89 1146 Pfam PF13432 Tetratricopeptide repeat 287 329 0.0012 T 17-10-2018 VI35_17490 2ff256a234e15f863865dbfef11f7d89 1146 Gene3D G3DSA:1.25.40.10 241 345 7.9E-6 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_17490 2ff256a234e15f863865dbfef11f7d89 1146 Pfam PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) 797 1125 9.7E-111 T 17-10-2018 IPR008410 Cellulose synthase operon C, C-terminal GO:0019867|GO:0030244 VI35_17490 2ff256a234e15f863865dbfef11f7d89 1146 SUPERFAMILY SSF48452 461 652 6.42E-11 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_17490 2ff256a234e15f863865dbfef11f7d89 1146 SMART SM00028 381 414 26.0 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_17490 2ff256a234e15f863865dbfef11f7d89 1146 SMART SM00028 300 333 57.0 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_17490 2ff256a234e15f863865dbfef11f7d89 1146 SMART SM00028 454 487 490.0 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_17490 2ff256a234e15f863865dbfef11f7d89 1146 SMART SM00028 347 380 10.0 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_17490 2ff256a234e15f863865dbfef11f7d89 1146 SUPERFAMILY SSF48452 289 430 1.61E-14 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_10950 0ee78bf51318d40859a51605058a6581 214 Pfam PF17516 ProQ C-terminal domain 164 213 3.3E-22 T 17-10-2018 IPR035236 RNA chaperone ProQ, C-terminal VI35_10950 0ee78bf51318d40859a51605058a6581 214 SUPERFAMILY SSF48657 2 109 3.27E-35 T 17-10-2018 IPR036442 ProQ/FinO domain superfamily VI35_10950 0ee78bf51318d40859a51605058a6581 214 Hamap MF_00749 RNA chaperone ProQ [proQ]. 3 214 27.344 T 17-10-2018 IPR023529 RNA chaperone ProQ GO:0003723|GO:0010608|GO:0033592|GO:0034057 VI35_10950 0ee78bf51318d40859a51605058a6581 214 Pfam PF04352 ProQ/FINO family 8 115 9.8E-41 T 17-10-2018 IPR016103 ProQ/FinO domain VI35_10950 0ee78bf51318d40859a51605058a6581 214 Gene3D G3DSA:1.10.1710.10 1 108 9.8E-22 T 17-10-2018 IPR036442 ProQ/FinO domain superfamily VI35_10950 0ee78bf51318d40859a51605058a6581 214 SMART SM00945 5 119 3.1E-60 T 17-10-2018 IPR016103 ProQ/FinO domain VI35_14810 189edce4531fc5717316df745e919d2b 429 TIGRFAM TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase 13 425 3.2E-176 T 17-10-2018 IPR004632 4-aminobutyrate aminotransferase, bacterial GO:0003867|GO:0009448 VI35_14810 189edce4531fc5717316df745e919d2b 429 SUPERFAMILY SSF53383 24 424 3.72E-135 T 17-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VI35_14810 189edce4531fc5717316df745e919d2b 429 Pfam PF00202 Aminotransferase class-III 26 424 1.1E-129 T 17-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VI35_14810 189edce4531fc5717316df745e919d2b 429 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 239 276 - T 17-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VI35_14810 189edce4531fc5717316df745e919d2b 429 Gene3D G3DSA:3.40.640.10 62 321 5.3E-164 T 17-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VI35_14810 189edce4531fc5717316df745e919d2b 429 PIRSF PIRSF000521 127 427 1.7E-40 T 17-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VI35_14810 189edce4531fc5717316df745e919d2b 429 PIRSF PIRSF000521 12 134 1.4E-5 T 17-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VI35_14810 189edce4531fc5717316df745e919d2b 429 Gene3D G3DSA:3.90.1150.10 11 420 5.3E-164 T 17-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VI35_17240 8185197403fb532b2e7ed0e6033afe48 344 Hamap MF_00567 Quinolinate synthase A [nadA]. 1 338 65.727 T 17-10-2018 IPR023513 Quinolinate synthase A, type 1 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342 VI35_17240 8185197403fb532b2e7ed0e6033afe48 344 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 20 332 1.1E-113 T 17-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 VI35_17240 8185197403fb532b2e7ed0e6033afe48 344 SUPERFAMILY SSF142754 20 332 2.62E-106 T 17-10-2018 IPR036094 Quinolinate synthetase A superfamily GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 VI35_17240 8185197403fb532b2e7ed0e6033afe48 344 Gene3D G3DSA:3.40.50.10800 191 286 1.1E-95 T 17-10-2018 VI35_17240 8185197403fb532b2e7ed0e6033afe48 344 Gene3D G3DSA:3.40.50.10800 22 313 1.1E-95 T 17-10-2018 VI35_17240 8185197403fb532b2e7ed0e6033afe48 344 Gene3D G3DSA:3.40.50.10800 106 331 1.1E-95 T 17-10-2018 VI35_17240 8185197403fb532b2e7ed0e6033afe48 344 Pfam PF02445 Quinolinate synthetase A protein 23 331 2.2E-103 T 17-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 VI35_11215 fee1927c4f14166e78705ed1b3241e9f 229 SMART SM00953 79 206 3.1E-31 T 17-10-2018 IPR014914 RES domain VI35_11215 fee1927c4f14166e78705ed1b3241e9f 229 Pfam PF08808 RES domain 59 214 2.3E-23 T 17-10-2018 IPR014914 RES domain VI35_10020 fdb8dc9627f3d352147db55251a28d2d 503 Pfam PF00171 Aldehyde dehydrogenase family 24 483 6.0E-128 T 17-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 VI35_10020 fdb8dc9627f3d352147db55251a28d2d 503 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 281 292 - T 17-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 VI35_10020 fdb8dc9627f3d352147db55251a28d2d 503 Gene3D G3DSA:3.40.309.10 257 454 8.8E-132 T 17-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 VI35_10020 fdb8dc9627f3d352147db55251a28d2d 503 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 13 487 4.0E-224 T 17-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 VI35_10020 fdb8dc9627f3d352147db55251a28d2d 503 SUPERFAMILY SSF53720 8 490 6.54E-138 T 17-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 VI35_10020 fdb8dc9627f3d352147db55251a28d2d 503 Gene3D G3DSA:3.40.605.10 25 482 8.8E-132 T 17-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 VI35_03305 4120e1990a5ad095f4738aa0be4d7fa9 236 Hamap MF_00201 DNA repair protein RecO [recO]. 1 231 21.541 T 17-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 VI35_03305 4120e1990a5ad095f4738aa0be4d7fa9 236 TIGRFAM TIGR00613 reco: DNA repair protein RecO 5 227 1.6E-29 T 17-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 VI35_03305 4120e1990a5ad095f4738aa0be4d7fa9 236 SUPERFAMILY SSF50249 3 72 9.77E-15 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_03305 4120e1990a5ad095f4738aa0be4d7fa9 236 Gene3D G3DSA:2.40.50.140 2 74 1.6E-30 T 17-10-2018 VI35_03305 4120e1990a5ad095f4738aa0be4d7fa9 236 Pfam PF02565 Recombination protein O C terminal 81 225 7.2E-23 T 17-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 VI35_03305 4120e1990a5ad095f4738aa0be4d7fa9 236 Gene3D G3DSA:1.20.1440.120 77 235 1.4E-46 T 17-10-2018 VI35_03305 4120e1990a5ad095f4738aa0be4d7fa9 236 SUPERFAMILY SSF57863 82 207 8.11E-12 T 17-10-2018 IPR037278 ARFGAP/RecO-like zinc finger VI35_03305 4120e1990a5ad095f4738aa0be4d7fa9 236 Pfam PF11967 Recombination protein O N terminal 3 72 1.5E-23 T 17-10-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal VI35_06370 83bf49cfb11279126137d53ac2a43e1a 267 SUPERFAMILY SSF53335 16 203 9.49E-42 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_06370 83bf49cfb11279126137d53ac2a43e1a 267 Gene3D G3DSA:3.40.50.150 17 204 3.3E-37 T 17-10-2018 VI35_06370 83bf49cfb11279126137d53ac2a43e1a 267 Pfam PF08241 Methyltransferase domain 57 148 5.2E-27 T 17-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 VI35_06370 83bf49cfb11279126137d53ac2a43e1a 267 Hamap MF_00835 Malonyl-[acyl-carrier protein] O-methyltransferase [bioC]. 9 266 28.745 T 17-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 VI35_06370 83bf49cfb11279126137d53ac2a43e1a 267 TIGRFAM TIGR02072 BioC: malonyl-acyl carrier protein O-methyltransferase BioC 17 263 4.3E-58 T 17-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 VI35_04695 6bc954321282b50768e8fdd1e25b64b4 153 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 1 153 7.7E-60 T 17-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 VI35_04695 6bc954321282b50768e8fdd1e25b64b4 153 Gene3D G3DSA:2.40.50.100 76 153 1.0E-29 T 17-10-2018 VI35_04695 6bc954321282b50768e8fdd1e25b64b4 153 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 109 126 - T 17-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 VI35_04695 6bc954321282b50768e8fdd1e25b64b4 153 Pfam PF00364 Biotin-requiring enzyme 80 152 4.7E-26 T 17-10-2018 IPR000089 Biotin/lipoyl attachment VI35_04695 6bc954321282b50768e8fdd1e25b64b4 153 SUPERFAMILY SSF51230 78 153 3.93E-25 T 17-10-2018 IPR011053 Single hybrid motif VI35_04695 6bc954321282b50768e8fdd1e25b64b4 153 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 114 127 2.6E-16 T 17-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 VI35_04695 6bc954321282b50768e8fdd1e25b64b4 153 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 99 113 2.6E-16 T 17-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 VI35_04695 6bc954321282b50768e8fdd1e25b64b4 153 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 82 95 2.6E-16 T 17-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 VI35_03380 22d2e3e217ac8aa403d667f18322e916 205 Gene3D G3DSA:3.40.50.150 2 204 3.1E-73 T 17-10-2018 VI35_03380 22d2e3e217ac8aa403d667f18322e916 205 SUPERFAMILY SSF53335 9 202 2.54E-43 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_03380 22d2e3e217ac8aa403d667f18322e916 205 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 127 142 - T 17-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 VI35_03380 22d2e3e217ac8aa403d667f18322e916 205 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 4 202 1.2E-64 T 17-10-2018 VI35_03380 22d2e3e217ac8aa403d667f18322e916 205 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 2 205 36.392 T 17-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 VI35_03380 22d2e3e217ac8aa403d667f18322e916 205 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 3 203 2.6E-75 T 17-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 VI35_16705 5187f16e64ad776a1bc0ad5b3b3fe2cb 200 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 34 169 7.1E-16 T 17-10-2018 VI35_16705 5187f16e64ad776a1bc0ad5b3b3fe2cb 200 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 99 115 1.1E-8 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_16705 5187f16e64ad776a1bc0ad5b3b3fe2cb 200 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 1.1E-8 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_16705 5187f16e64ad776a1bc0ad5b3b3fe2cb 200 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 54 65 1.1E-8 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_16705 5187f16e64ad776a1bc0ad5b3b3fe2cb 200 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 144 1.1E-8 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_16705 5187f16e64ad776a1bc0ad5b3b3fe2cb 200 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 145 162 1.1E-8 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_16705 5187f16e64ad776a1bc0ad5b3b3fe2cb 200 SUPERFAMILY SSF51735 1 200 1.2E-29 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_16705 5187f16e64ad776a1bc0ad5b3b3fe2cb 200 Gene3D G3DSA:3.40.50.720 1 199 1.1E-45 T 17-10-2018 VI35_19915 c7f80f5d30e75dc962cc71125049ba69 157 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 119 135 - T 17-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 VI35_19915 c7f80f5d30e75dc962cc71125049ba69 157 Pfam PF03449 Transcription elongation factor, N-terminal 5 74 4.6E-24 T 17-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 VI35_19915 c7f80f5d30e75dc962cc71125049ba69 157 Gene3D G3DSA:3.10.50.30 77 157 1.0E-32 T 17-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 VI35_19915 c7f80f5d30e75dc962cc71125049ba69 157 TIGRFAM TIGR01461 greB: transcription elongation factor GreB 2 157 5.0E-80 T 17-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 VI35_19915 c7f80f5d30e75dc962cc71125049ba69 157 SUPERFAMILY SSF54534 81 155 6.8E-20 T 17-10-2018 VI35_19915 c7f80f5d30e75dc962cc71125049ba69 157 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 17-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 VI35_19915 c7f80f5d30e75dc962cc71125049ba69 157 Gene3D G3DSA:1.10.287.180 1 76 5.8E-30 T 17-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 VI35_19915 c7f80f5d30e75dc962cc71125049ba69 157 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 81 155 2.3E-22 T 17-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 VI35_19915 c7f80f5d30e75dc962cc71125049ba69 157 SUPERFAMILY SSF46557 3 78 3.4E-26 T 17-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 VI35_19915 c7f80f5d30e75dc962cc71125049ba69 157 Hamap MF_00930 Transcription elongation factor GreB [greB]. 1 156 52.756 T 17-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 VI35_19915 c7f80f5d30e75dc962cc71125049ba69 157 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 154 26.945 T 17-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 VI35_19915 c7f80f5d30e75dc962cc71125049ba69 157 PIRSF PIRSF006092 1 157 2.0E-43 T 17-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 VI35_09640 1efa1d463f98c6736f6cd7c98c852a12 431 Gene3D G3DSA:3.30.930.10 105 430 1.3E-116 T 17-10-2018 VI35_09640 1efa1d463f98c6736f6cd7c98c852a12 431 Gene3D G3DSA:1.10.287.40 1 104 9.3E-18 T 17-10-2018 VI35_09640 1efa1d463f98c6736f6cd7c98c852a12 431 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 429 39.657 T 17-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 VI35_09640 1efa1d463f98c6736f6cd7c98c852a12 431 SUPERFAMILY SSF46589 1 112 1.88E-24 T 17-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 VI35_09640 1efa1d463f98c6736f6cd7c98c852a12 431 PIRSF PIRSF001529 1 431 5.1E-175 T 17-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 VI35_09640 1efa1d463f98c6736f6cd7c98c852a12 431 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 107 1.1E-26 T 17-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 VI35_09640 1efa1d463f98c6736f6cd7c98c852a12 431 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 424 2.6E-166 T 17-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 VI35_09640 1efa1d463f98c6736f6cd7c98c852a12 431 SUPERFAMILY SSF55681 116 427 8.57E-98 T 17-10-2018 VI35_09640 1efa1d463f98c6736f6cd7c98c852a12 431 PRINTS PR00981 Seryl-tRNA synthetase signature 342 358 1.3E-33 T 17-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 VI35_09640 1efa1d463f98c6736f6cd7c98c852a12 431 PRINTS PR00981 Seryl-tRNA synthetase signature 273 285 1.3E-33 T 17-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 VI35_09640 1efa1d463f98c6736f6cd7c98c852a12 431 PRINTS PR00981 Seryl-tRNA synthetase signature 285 298 1.3E-33 T 17-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 VI35_09640 1efa1d463f98c6736f6cd7c98c852a12 431 PRINTS PR00981 Seryl-tRNA synthetase signature 360 376 1.3E-33 T 17-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 VI35_09640 1efa1d463f98c6736f6cd7c98c852a12 431 PRINTS PR00981 Seryl-tRNA synthetase signature 325 338 1.3E-33 T 17-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 VI35_09640 1efa1d463f98c6736f6cd7c98c852a12 431 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 232 407 9.7E-35 T 17-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_02965 7a15f0759f835e9b22e9413c65cea9a3 291 Pfam PF03466 LysR substrate binding domain 89 290 4.6E-44 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_02965 7a15f0759f835e9b22e9413c65cea9a3 291 Gene3D G3DSA:3.40.190.290 92 291 1.1E-45 T 17-10-2018 VI35_02965 7a15f0759f835e9b22e9413c65cea9a3 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 4.8E-22 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_02965 7a15f0759f835e9b22e9413c65cea9a3 291 SUPERFAMILY SSF46785 1 86 4.52E-24 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_02965 7a15f0759f835e9b22e9413c65cea9a3 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 5.4E-8 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_02965 7a15f0759f835e9b22e9413c65cea9a3 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 5.4E-8 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_02965 7a15f0759f835e9b22e9413c65cea9a3 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 5.4E-8 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_02965 7a15f0759f835e9b22e9413c65cea9a3 291 SUPERFAMILY SSF53850 90 290 7.06E-38 T 17-10-2018 VI35_02965 7a15f0759f835e9b22e9413c65cea9a3 291 Gene3D G3DSA:1.10.10.10 1 91 1.4E-27 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_17800 f1a997c3807b61bffda60fa9945fb74c 200 Gene3D G3DSA:1.10.530.10 34 165 8.8E-15 T 17-10-2018 VI35_17800 f1a997c3807b61bffda60fa9945fb74c 200 Pfam PF01464 Transglycosylase SLT domain 46 145 1.3E-4 T 17-10-2018 IPR008258 Transglycosylase SLT domain 1 VI35_17800 f1a997c3807b61bffda60fa9945fb74c 200 SUPERFAMILY SSF53955 6 182 3.75E-26 T 17-10-2018 IPR023346 Lysozyme-like domain superfamily VI35_09990 4f58ef730c673ac833742e5af0d27fa8 137 Pfam PF13411 MerR HTH family regulatory protein 13 78 3.5E-17 T 17-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VI35_09990 4f58ef730c673ac833742e5af0d27fa8 137 Gene3D G3DSA:1.10.1660.10 2 123 7.2E-29 T 17-10-2018 VI35_09990 4f58ef730c673ac833742e5af0d27fa8 137 SUPERFAMILY SSF46955 12 121 5.13E-27 T 17-10-2018 IPR009061 Putative DNA-binding domain superfamily VI35_09990 4f58ef730c673ac833742e5af0d27fa8 137 SMART SM00422 13 80 3.1E-22 T 17-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VI35_00405 f418a98c727b433cb55d61c4df4ed902 152 TIGRFAM TIGR00576 dut: dUTP diphosphatase 10 151 2.7E-49 T 17-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 VI35_00405 f418a98c727b433cb55d61c4df4ed902 152 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 7 151 34.257 T 17-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 VI35_00405 f418a98c727b433cb55d61c4df4ed902 152 Pfam PF00692 dUTPase 18 150 5.4E-40 T 17-10-2018 IPR029054 dUTPase-like VI35_00405 f418a98c727b433cb55d61c4df4ed902 152 SUPERFAMILY SSF51283 1 151 3.27E-55 T 17-10-2018 IPR036157 dUTPase-like superfamily VI35_00405 f418a98c727b433cb55d61c4df4ed902 152 Gene3D G3DSA:2.70.40.10 1 151 3.4E-54 T 17-10-2018 IPR036157 dUTPase-like superfamily VI35_06380 dbd1a48c4407a4f56ea85b1bebefdad4 290 Gene3D G3DSA:3.30.2010.10 68 161 8.1E-36 T 17-10-2018 VI35_06380 dbd1a48c4407a4f56ea85b1bebefdad4 290 Hamap MF_00188 Protease HtpX [htpX]. 1 290 25.179 T 17-10-2018 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 VI35_06380 dbd1a48c4407a4f56ea85b1bebefdad4 290 Pfam PF01435 Peptidase family M48 78 289 3.9E-40 T 17-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 VI35_14830 624f68a2dc033e8ece3b3f5cbb3bad6f 384 Pfam PF02690 Na+/Pi-cotransporter 30 185 1.1E-19 T 17-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 VI35_14830 624f68a2dc033e8ece3b3f5cbb3bad6f 384 Pfam PF02690 Na+/Pi-cotransporter 218 331 3.9E-19 T 17-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 VI35_00255 b313ba3333fc6fd5269439a6431c1880 406 Gene3D G3DSA:1.20.1250.20 19 205 6.5E-18 T 17-10-2018 VI35_00255 b313ba3333fc6fd5269439a6431c1880 406 SUPERFAMILY SSF103473 12 401 2.09E-53 T 17-10-2018 IPR036259 MFS transporter superfamily VI35_00255 b313ba3333fc6fd5269439a6431c1880 406 Gene3D G3DSA:1.20.1250.20 224 404 4.1E-22 T 17-10-2018 VI35_00255 b313ba3333fc6fd5269439a6431c1880 406 Pfam PF07690 Major Facilitator Superfamily 32 276 1.2E-20 T 17-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VI35_15435 c999434a3fd5acc4734c64c7df9b07c4 578 SUPERFAMILY SSF52540 291 498 6.36E-33 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_15435 c999434a3fd5acc4734c64c7df9b07c4 578 Pfam PF00005 ABC transporter 317 441 1.5E-12 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_15435 c999434a3fd5acc4734c64c7df9b07c4 578 Gene3D G3DSA:3.40.50.300 2 233 1.6E-46 T 17-10-2018 VI35_15435 c999434a3fd5acc4734c64c7df9b07c4 578 SMART SM00382 29 196 1.2E-12 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_15435 c999434a3fd5acc4734c64c7df9b07c4 578 SMART SM00382 319 485 2.1E-7 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_15435 c999434a3fd5acc4734c64c7df9b07c4 578 SUPERFAMILY SSF52540 5 199 2.36E-41 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_15435 c999434a3fd5acc4734c64c7df9b07c4 578 Pfam PF00005 ABC transporter 21 151 8.8E-25 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_15435 c999434a3fd5acc4734c64c7df9b07c4 578 Gene3D G3DSA:3.40.50.300 290 499 1.1E-35 T 17-10-2018 VI35_15435 c999434a3fd5acc4734c64c7df9b07c4 578 ProSitePatterns PS00211 ABC transporters family signature. 413 427 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_06195 c9a25e86aac662f538b73bd586238589 259 SMART SM00345 13 72 9.0E-24 T 17-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VI35_06195 c9a25e86aac662f538b73bd586238589 259 SUPERFAMILY SSF48008 95 228 6.8E-24 T 17-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal VI35_06195 c9a25e86aac662f538b73bd586238589 259 Pfam PF07729 FCD domain 97 220 3.1E-20 T 17-10-2018 IPR011711 GntR, C-terminal VI35_06195 c9a25e86aac662f538b73bd586238589 259 Gene3D G3DSA:1.20.120.530 91 236 7.5E-24 T 17-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal VI35_06195 c9a25e86aac662f538b73bd586238589 259 SUPERFAMILY SSF46785 2 76 9.05E-21 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_06195 c9a25e86aac662f538b73bd586238589 259 SMART SM00895 97 221 1.3E-19 T 17-10-2018 IPR011711 GntR, C-terminal VI35_06195 c9a25e86aac662f538b73bd586238589 259 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 62 4.2E-9 T 17-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VI35_06195 c9a25e86aac662f538b73bd586238589 259 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 32 46 4.2E-9 T 17-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VI35_06195 c9a25e86aac662f538b73bd586238589 259 Gene3D G3DSA:1.10.10.10 3 79 3.9E-21 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_06195 c9a25e86aac662f538b73bd586238589 259 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 72 3.7E-22 T 17-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VI35_07295 fff61e9b43d4d5cf740a4d97000c8bb3 259 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 6 252 2.6E-83 T 17-10-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0030288|GO:0071705 VI35_07295 fff61e9b43d4d5cf740a4d97000c8bb3 259 SUPERFAMILY SSF53850 1 256 1.03E-68 T 17-10-2018 VI35_07295 fff61e9b43d4d5cf740a4d97000c8bb3 259 SMART SM00079 27 254 1.3E-4 T 17-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 VI35_07295 fff61e9b43d4d5cf740a4d97000c8bb3 259 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 28 253 1.4E-63 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_07295 fff61e9b43d4d5cf740a4d97000c8bb3 259 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 50 63 - T 17-10-2018 IPR018313 Solute-binding protein family 3, conserved site VI35_07295 fff61e9b43d4d5cf740a4d97000c8bb3 259 Gene3D G3DSA:3.40.190.10 29 251 5.8E-75 T 17-10-2018 VI35_07295 fff61e9b43d4d5cf740a4d97000c8bb3 259 Gene3D G3DSA:3.40.190.10 113 212 5.8E-75 T 17-10-2018 VI35_07295 fff61e9b43d4d5cf740a4d97000c8bb3 259 SMART SM00062 27 255 2.4E-66 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_07090 691a72bffc8e27994e21dc0c1d8dd422 267 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 30 47 - T 17-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 VI35_07090 691a72bffc8e27994e21dc0c1d8dd422 267 PIRSF PIRSF000097 1 267 1.9E-64 T 17-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 VI35_07090 691a72bffc8e27994e21dc0c1d8dd422 267 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 115 132 - T 17-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 VI35_07090 691a72bffc8e27994e21dc0c1d8dd422 267 Gene3D G3DSA:3.20.20.100 1 267 1.1E-89 T 17-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily VI35_07090 691a72bffc8e27994e21dc0c1d8dd422 267 PRINTS PR00069 Aldo-keto reductase signature 115 132 3.6E-44 T 17-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 VI35_07090 691a72bffc8e27994e21dc0c1d8dd422 267 PRINTS PR00069 Aldo-keto reductase signature 26 50 3.6E-44 T 17-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 VI35_07090 691a72bffc8e27994e21dc0c1d8dd422 267 PRINTS PR00069 Aldo-keto reductase signature 150 179 3.6E-44 T 17-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 VI35_07090 691a72bffc8e27994e21dc0c1d8dd422 267 PRINTS PR00069 Aldo-keto reductase signature 187 211 3.6E-44 T 17-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 VI35_07090 691a72bffc8e27994e21dc0c1d8dd422 267 PRINTS PR00069 Aldo-keto reductase signature 82 100 3.6E-44 T 17-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 VI35_07090 691a72bffc8e27994e21dc0c1d8dd422 267 SUPERFAMILY SSF51430 3 262 5.76E-81 T 17-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily VI35_07090 691a72bffc8e27994e21dc0c1d8dd422 267 Pfam PF00248 Aldo/keto reductase family 7 251 1.2E-48 T 17-10-2018 IPR023210 NADP-dependent oxidoreductase domain VI35_01615 7ed17a9f00b6f906c9ebec0e57d9e77b 112 SUPERFAMILY SSF54913 1 112 3.5E-43 T 17-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta VI35_01615 7ed17a9f00b6f906c9ebec0e57d9e77b 112 PRINTS PR00340 P-II protein signature 2 17 2.2E-39 T 17-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VI35_01615 7ed17a9f00b6f906c9ebec0e57d9e77b 112 PRINTS PR00340 P-II protein signature 23 41 2.2E-39 T 17-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VI35_01615 7ed17a9f00b6f906c9ebec0e57d9e77b 112 PRINTS PR00340 P-II protein signature 52 75 2.2E-39 T 17-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VI35_01615 7ed17a9f00b6f906c9ebec0e57d9e77b 112 PRINTS PR00340 P-II protein signature 83 103 2.2E-39 T 17-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VI35_01615 7ed17a9f00b6f906c9ebec0e57d9e77b 112 Gene3D G3DSA:3.30.70.120 1 112 6.0E-45 T 17-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal VI35_01615 7ed17a9f00b6f906c9ebec0e57d9e77b 112 SMART SM00938 4 105 4.5E-65 T 17-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VI35_01615 7ed17a9f00b6f906c9ebec0e57d9e77b 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 2.4E-41 T 17-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VI35_01615 7ed17a9f00b6f906c9ebec0e57d9e77b 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 17-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 VI35_01615 7ed17a9f00b6f906c9ebec0e57d9e77b 112 PIRSF PIRSF039144 1 112 8.6E-54 T 17-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VI35_01615 7ed17a9f00b6f906c9ebec0e57d9e77b 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 17-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 VI35_07110 3ec85f05fd696321fb9add403134bfa9 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 5.0E-19 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_07110 3ec85f05fd696321fb9add403134bfa9 300 SUPERFAMILY SSF53850 90 297 1.65E-42 T 17-10-2018 VI35_07110 3ec85f05fd696321fb9add403134bfa9 300 Gene3D G3DSA:3.40.190.10 164 266 8.5E-63 T 17-10-2018 VI35_07110 3ec85f05fd696321fb9add403134bfa9 300 Pfam PF03466 LysR substrate binding domain 89 295 8.4E-42 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_07110 3ec85f05fd696321fb9add403134bfa9 300 Gene3D G3DSA:1.10.10.10 1 85 1.5E-26 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_07110 3ec85f05fd696321fb9add403134bfa9 300 Gene3D G3DSA:3.40.190.10 93 293 8.5E-63 T 17-10-2018 VI35_07110 3ec85f05fd696321fb9add403134bfa9 300 SUPERFAMILY SSF46785 6 113 7.12E-21 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_17350 5790748267602321e9e957e99256eca4 135 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 6 127 6.4E-47 T 17-10-2018 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 VI35_17350 5790748267602321e9e957e99256eca4 135 SUPERFAMILY SSF54637 3 130 8.15E-41 T 17-10-2018 IPR029069 HotDog domain superfamily VI35_17350 5790748267602321e9e957e99256eca4 135 Pfam PF03061 Thioesterase superfamily 19 103 7.0E-19 T 17-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 VI35_17350 5790748267602321e9e957e99256eca4 135 PIRSF PIRSF003230 1 135 2.1E-45 T 17-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 VI35_17350 5790748267602321e9e957e99256eca4 135 Gene3D G3DSA:3.10.129.10 3 134 3.7E-42 T 17-10-2018 VI35_17350 5790748267602321e9e957e99256eca4 135 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 8 124 1.2E-38 T 17-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 VI35_09535 2daea89fdeee49563f3b7d2501f57cb4 760 PIRSF PIRSF000379 8 760 0.0 T 17-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 VI35_09535 2daea89fdeee49563f3b7d2501f57cb4 760 Pfam PF02901 Pyruvate formate lyase-like 26 614 9.1E-201 T 17-10-2018 IPR004184 Pyruvate formate lyase domain GO:0003824 VI35_09535 2daea89fdeee49563f3b7d2501f57cb4 760 SUPERFAMILY SSF51998 4 758 2.98E-288 T 17-10-2018 VI35_09535 2daea89fdeee49563f3b7d2501f57cb4 760 Gene3D G3DSA:3.20.70.20 2 760 0.0 T 17-10-2018 VI35_09535 2daea89fdeee49563f3b7d2501f57cb4 760 TIGRFAM TIGR01255 pyr_form_ly_1: formate acetyltransferase 11 760 0.0 T 17-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 VI35_09535 2daea89fdeee49563f3b7d2501f57cb4 760 Pfam PF01228 Glycine radical 630 741 1.3E-42 T 17-10-2018 IPR001150 Glycine radical domain GO:0003824 VI35_09535 2daea89fdeee49563f3b7d2501f57cb4 760 ProSitePatterns PS00850 Glycine radical domain signature. 730 738 - T 17-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site VI35_05185 1439cc290c81d57a67c55ae9466c64fa 346 SUPERFAMILY SSF51197 5 288 5.7E-81 T 17-10-2018 VI35_05185 1439cc290c81d57a67c55ae9466c64fa 346 Pfam PF03171 2OG-Fe(II) oxygenase superfamily 181 273 1.2E-18 T 17-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 VI35_05185 1439cc290c81d57a67c55ae9466c64fa 346 PRINTS PR00682 Isopenicillin N synthase signature 198 219 3.1E-11 T 17-10-2018 VI35_05185 1439cc290c81d57a67c55ae9466c64fa 346 PRINTS PR00682 Isopenicillin N synthase signature 29 46 3.1E-11 T 17-10-2018 VI35_05185 1439cc290c81d57a67c55ae9466c64fa 346 PRINTS PR00682 Isopenicillin N synthase signature 234 260 3.1E-11 T 17-10-2018 VI35_05185 1439cc290c81d57a67c55ae9466c64fa 346 Gene3D G3DSA:2.60.120.330 2 320 4.9E-82 T 17-10-2018 IPR027443 Isopenicillin N synthase-like VI35_05185 1439cc290c81d57a67c55ae9466c64fa 346 Pfam PF14226 non-haem dioxygenase in morphine synthesis N-terminal 7 130 1.9E-37 T 17-10-2018 IPR026992 Non-haem dioxygenase N-terminal domain VI35_16305 6743512ae4f27db371537ea19d0a5019 68 TIGRFAM TIGR02443 TIGR02443: conserved hypothetical protein 5 62 8.4E-23 T 17-10-2018 IPR012658 Conserved hypothetical protein CHP02443 VI35_16305 6743512ae4f27db371537ea19d0a5019 68 Pfam PF09526 Probable metal-binding protein (DUF2387) 6 61 5.0E-17 T 17-10-2018 IPR012658 Conserved hypothetical protein CHP02443 VI35_05930 467daa23b54c1cdff1d84562f0798445 252 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 51 246 4.7E-84 T 17-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 VI35_05930 467daa23b54c1cdff1d84562f0798445 252 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 236 246 5.3E-24 T 17-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 VI35_05930 467daa23b54c1cdff1d84562f0798445 252 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 47 56 5.3E-24 T 17-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 VI35_05930 467daa23b54c1cdff1d84562f0798445 252 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 107 119 5.3E-24 T 17-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 VI35_05930 467daa23b54c1cdff1d84562f0798445 252 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 147 159 5.3E-24 T 17-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 VI35_05930 467daa23b54c1cdff1d84562f0798445 252 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 119 133 5.3E-24 T 17-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 VI35_05930 467daa23b54c1cdff1d84562f0798445 252 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 168 180 5.3E-24 T 17-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 VI35_05930 467daa23b54c1cdff1d84562f0798445 252 Pfam PF00813 FliP family 51 242 3.3E-79 T 17-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VI35_05930 467daa23b54c1cdff1d84562f0798445 252 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 175 190 - T 17-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VI35_05930 467daa23b54c1cdff1d84562f0798445 252 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 196 217 9.2E-68 T 17-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VI35_05930 467daa23b54c1cdff1d84562f0798445 252 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 49 68 9.2E-68 T 17-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VI35_05930 467daa23b54c1cdff1d84562f0798445 252 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 88 107 9.2E-68 T 17-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VI35_05930 467daa23b54c1cdff1d84562f0798445 252 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 220 245 9.2E-68 T 17-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VI35_05930 467daa23b54c1cdff1d84562f0798445 252 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 175 195 9.2E-68 T 17-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VI35_05930 467daa23b54c1cdff1d84562f0798445 252 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 68 88 9.2E-68 T 17-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VI35_05930 467daa23b54c1cdff1d84562f0798445 252 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 223 235 - T 17-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VI35_20365 b72cc2f042a64bab84aa153a04e54e4a 128 Gene3D G3DSA:2.40.50.140 18 128 1.4E-33 T 17-10-2018 VI35_20365 b72cc2f042a64bab84aa153a04e54e4a 128 SUPERFAMILY SSF50249 25 127 1.03E-30 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_20365 b72cc2f042a64bab84aa153a04e54e4a 128 Pfam PF01588 Putative tRNA binding domain 31 125 3.3E-28 T 17-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 VI35_00775 a7ac58383f0621761a39ada9abe46452 384 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_00775 a7ac58383f0621761a39ada9abe46452 384 SUPERFAMILY SSF52540 22 260 2.59E-86 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_00775 a7ac58383f0621761a39ada9abe46452 384 SMART SM00382 47 230 1.1E-16 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_00775 a7ac58383f0621761a39ada9abe46452 384 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 53 382 2.2E-128 T 17-10-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 VI35_00775 a7ac58383f0621761a39ada9abe46452 384 Gene3D G3DSA:2.40.50.140 306 357 2.1E-8 T 17-10-2018 VI35_00775 a7ac58383f0621761a39ada9abe46452 384 Pfam PF08402 TOBE domain 300 382 2.3E-14 T 17-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 VI35_00775 a7ac58383f0621761a39ada9abe46452 384 Pfam PF00005 ABC transporter 38 180 3.4E-37 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_00775 a7ac58383f0621761a39ada9abe46452 384 Gene3D G3DSA:3.40.50.300 22 240 1.1E-67 T 17-10-2018 VI35_00775 a7ac58383f0621761a39ada9abe46452 384 SUPERFAMILY SSF50331 255 382 4.08E-16 T 17-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal VI35_00775 a7ac58383f0621761a39ada9abe46452 384 Gene3D G3DSA:2.40.50.940 241 305 2.1E-8 T 17-10-2018 VI35_12570 81d6546d72f61f9dd327184cab1a5733 267 Pfam PF00459 Inositol monophosphatase family 2 260 1.1E-72 T 17-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VI35_12570 81d6546d72f61f9dd327184cab1a5733 267 Gene3D G3DSA:3.40.190.80 142 267 2.4E-38 T 17-10-2018 VI35_12570 81d6546d72f61f9dd327184cab1a5733 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 60 76 4.1E-60 T 17-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VI35_12570 81d6546d72f61f9dd327184cab1a5733 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 177 198 4.1E-60 T 17-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VI35_12570 81d6546d72f61f9dd327184cab1a5733 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 38 58 4.1E-60 T 17-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VI35_12570 81d6546d72f61f9dd327184cab1a5733 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 208 232 4.1E-60 T 17-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VI35_12570 81d6546d72f61f9dd327184cab1a5733 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 130 153 4.1E-60 T 17-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VI35_12570 81d6546d72f61f9dd327184cab1a5733 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 81 97 4.1E-60 T 17-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VI35_12570 81d6546d72f61f9dd327184cab1a5733 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 198 210 7.1E-37 T 17-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 VI35_12570 81d6546d72f61f9dd327184cab1a5733 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 156 182 7.1E-37 T 17-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 VI35_12570 81d6546d72f61f9dd327184cab1a5733 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 104 123 7.1E-37 T 17-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 VI35_12570 81d6546d72f61f9dd327184cab1a5733 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 17 39 7.1E-37 T 17-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 VI35_12570 81d6546d72f61f9dd327184cab1a5733 267 SUPERFAMILY SSF56655 1 262 9.29E-86 T 17-10-2018 VI35_12570 81d6546d72f61f9dd327184cab1a5733 267 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 211 225 - T 17-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 VI35_12570 81d6546d72f61f9dd327184cab1a5733 267 Gene3D G3DSA:3.30.540.10 1 140 2.1E-51 T 17-10-2018 VI35_00860 3de83bf1226069da9fa36b50b7a8ead5 859 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 17 36 3.6E-14 T 17-10-2018 VI35_00860 3de83bf1226069da9fa36b50b7a8ead5 859 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 158 176 3.6E-14 T 17-10-2018 VI35_00860 3de83bf1226069da9fa36b50b7a8ead5 859 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 273 295 3.6E-14 T 17-10-2018 VI35_00860 3de83bf1226069da9fa36b50b7a8ead5 859 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 113 131 3.6E-14 T 17-10-2018 VI35_00860 3de83bf1226069da9fa36b50b7a8ead5 859 Gene3D G3DSA:1.10.10.1100 434 488 6.0E-13 T 17-10-2018 VI35_00860 3de83bf1226069da9fa36b50b7a8ead5 859 PIRSF PIRSF037149 10 846 0.0 T 17-10-2018 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 VI35_00860 3de83bf1226069da9fa36b50b7a8ead5 859 Gene3D G3DSA:3.50.50.60 18 295 2.3E-86 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_00860 3de83bf1226069da9fa36b50b7a8ead5 859 Gene3D G3DSA:3.50.50.60 121 258 2.3E-86 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_00860 3de83bf1226069da9fa36b50b7a8ead5 859 Gene3D G3DSA:3.30.413.10 643 808 1.5E-29 T 17-10-2018 VI35_00860 3de83bf1226069da9fa36b50b7a8ead5 859 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 571 633 1.9E-11 T 17-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VI35_00860 3de83bf1226069da9fa36b50b7a8ead5 859 SUPERFAMILY SSF51905 156 321 1.63E-24 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_00860 3de83bf1226069da9fa36b50b7a8ead5 859 SUPERFAMILY SSF55124 513 640 3.6E-30 T 17-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VI35_00860 3de83bf1226069da9fa36b50b7a8ead5 859 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 690 706 - T 17-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VI35_00860 3de83bf1226069da9fa36b50b7a8ead5 859 SUPERFAMILY SSF56014 644 819 1.13E-46 T 17-10-2018 VI35_00860 3de83bf1226069da9fa36b50b7a8ead5 859 Pfam PF04324 BFD-like [2Fe-2S] binding domain 435 482 6.3E-16 T 17-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain VI35_00860 3de83bf1226069da9fa36b50b7a8ead5 859 SUPERFAMILY SSF51905 11 198 4.43E-43 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_00860 3de83bf1226069da9fa36b50b7a8ead5 859 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 17 811 0.0 T 17-10-2018 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 VI35_00860 3de83bf1226069da9fa36b50b7a8ead5 859 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 288 295 1.4E-10 T 17-10-2018 VI35_00860 3de83bf1226069da9fa36b50b7a8ead5 859 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 158 183 1.4E-10 T 17-10-2018 VI35_00860 3de83bf1226069da9fa36b50b7a8ead5 859 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 247 261 1.4E-10 T 17-10-2018 VI35_00860 3de83bf1226069da9fa36b50b7a8ead5 859 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 116 125 1.4E-10 T 17-10-2018 VI35_00860 3de83bf1226069da9fa36b50b7a8ead5 859 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 644 767 2.9E-14 T 17-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VI35_00860 3de83bf1226069da9fa36b50b7a8ead5 859 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 16 295 8.1E-50 T 17-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VI35_00860 3de83bf1226069da9fa36b50b7a8ead5 859 PRINTS PR00397 Sirohaem Fe-binding site signature 690 708 6.2E-6 T 17-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VI35_00860 3de83bf1226069da9fa36b50b7a8ead5 859 PRINTS PR00397 Sirohaem Fe-binding site signature 647 665 6.2E-6 T 17-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VI35_12535 da1c74148b8b016ac3d9595461880c05 248 SUPERFAMILY SSF141868 26 233 6.28E-18 T 17-10-2018 IPR035919 EAL domain superfamily VI35_12535 da1c74148b8b016ac3d9595461880c05 248 Gene3D G3DSA:3.20.20.450 18 239 1.9E-15 T 17-10-2018 IPR035919 EAL domain superfamily VI35_12535 da1c74148b8b016ac3d9595461880c05 248 SMART SM00052 9 228 8.6E-5 T 17-10-2018 IPR001633 EAL domain VI35_12535 da1c74148b8b016ac3d9595461880c05 248 Pfam PF00563 EAL domain 43 223 8.3E-12 T 17-10-2018 IPR001633 EAL domain VI35_05850 32d7d723285a1754f19bb0f67ac9ccf0 363 SMART SM00471 169 317 8.6E-5 T 17-10-2018 IPR003607 HD/PDEase domain VI35_05850 32d7d723285a1754f19bb0f67ac9ccf0 363 SUPERFAMILY SSF55781 11 145 1.5E-12 T 17-10-2018 VI35_05850 32d7d723285a1754f19bb0f67ac9ccf0 363 Pfam PF01966 HD domain 174 307 1.3E-18 T 17-10-2018 IPR006674 HD domain VI35_05850 32d7d723285a1754f19bb0f67ac9ccf0 363 Gene3D G3DSA:3.30.450.40 5 148 5.5E-8 T 17-10-2018 IPR029016 GAF-like domain superfamily VI35_05850 32d7d723285a1754f19bb0f67ac9ccf0 363 Gene3D G3DSA:1.10.3210.10 152 361 4.1E-68 T 17-10-2018 VI35_05850 32d7d723285a1754f19bb0f67ac9ccf0 363 SUPERFAMILY SSF109604 167 344 4.85E-37 T 17-10-2018 VI35_05360 a193585a4331b56ce7661557b718df64 357 Pfam PF11104 Type IV pilus assembly protein PilM; 19 352 1.5E-96 T 17-10-2018 IPR005883 Type IV pilus assembly protein PilM VI35_05360 a193585a4331b56ce7661557b718df64 357 SMART SM00842 17 183 0.0072 T 17-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 VI35_05360 a193585a4331b56ce7661557b718df64 357 SUPERFAMILY SSF53067 194 352 4.82E-19 T 17-10-2018 VI35_05360 a193585a4331b56ce7661557b718df64 357 Gene3D G3DSA:3.30.1490.300 93 151 1.6E-69 T 17-10-2018 VI35_05360 a193585a4331b56ce7661557b718df64 357 SUPERFAMILY SSF53067 17 184 5.56E-11 T 17-10-2018 VI35_05360 a193585a4331b56ce7661557b718df64 357 Gene3D G3DSA:3.30.420.40 192 319 1.6E-69 T 17-10-2018 VI35_05360 a193585a4331b56ce7661557b718df64 357 PIRSF PIRSF019169 6 353 1.3E-89 T 17-10-2018 IPR005883 Type IV pilus assembly protein PilM VI35_05360 a193585a4331b56ce7661557b718df64 357 TIGRFAM TIGR01175 pilM: type IV pilus assembly protein PilM 17 352 5.3E-78 T 17-10-2018 IPR005883 Type IV pilus assembly protein PilM VI35_05360 a193585a4331b56ce7661557b718df64 357 Gene3D G3DSA:3.30.420.40 19 350 1.6E-69 T 17-10-2018 VI35_14330 3d2d2e8cab1f350df1d268b74f65e869 642 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 603 9.0E-291 T 17-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 VI35_14330 3d2d2e8cab1f350df1d268b74f65e869 642 Pfam PF00012 Hsp70 protein 4 602 7.5E-262 T 17-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VI35_14330 3d2d2e8cab1f350df1d268b74f65e869 642 SUPERFAMILY SSF53067 4 182 4.96E-65 T 17-10-2018 VI35_14330 3d2d2e8cab1f350df1d268b74f65e869 642 SUPERFAMILY SSF100920 385 540 6.15E-62 T 17-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 VI35_14330 3d2d2e8cab1f350df1d268b74f65e869 642 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 637 36.672 T 17-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 VI35_14330 3d2d2e8cab1f350df1d268b74f65e869 642 Gene3D G3DSA:3.90.640.10 229 316 1.4E-165 T 17-10-2018 VI35_14330 3d2d2e8cab1f350df1d268b74f65e869 642 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 337 351 - T 17-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 VI35_14330 3d2d2e8cab1f350df1d268b74f65e869 642 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 192 205 - T 17-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 VI35_14330 3d2d2e8cab1f350df1d268b74f65e869 642 SUPERFAMILY SSF53067 187 382 4.28E-66 T 17-10-2018 VI35_14330 3d2d2e8cab1f350df1d268b74f65e869 642 Gene3D G3DSA:3.30.420.40 180 366 1.4E-165 T 17-10-2018 VI35_14330 3d2d2e8cab1f350df1d268b74f65e869 642 Gene3D G3DSA:3.30.420.40 5 379 1.4E-165 T 17-10-2018 VI35_14330 3d2d2e8cab1f350df1d268b74f65e869 642 SUPERFAMILY SSF100934 507 611 8.24E-17 T 17-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 VI35_14330 3d2d2e8cab1f350df1d268b74f65e869 642 Gene3D G3DSA:2.60.34.10 383 523 7.6E-68 T 17-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 VI35_14330 3d2d2e8cab1f350df1d268b74f65e869 642 PRINTS PR00301 70kDa heat shock protein signature 3 16 1.8E-79 T 17-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VI35_14330 3d2d2e8cab1f350df1d268b74f65e869 642 PRINTS PR00301 70kDa heat shock protein signature 198 208 1.8E-79 T 17-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VI35_14330 3d2d2e8cab1f350df1d268b74f65e869 642 PRINTS PR00301 70kDa heat shock protein signature 138 158 1.8E-79 T 17-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VI35_14330 3d2d2e8cab1f350df1d268b74f65e869 642 PRINTS PR00301 70kDa heat shock protein signature 388 407 1.8E-79 T 17-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VI35_14330 3d2d2e8cab1f350df1d268b74f65e869 642 PRINTS PR00301 70kDa heat shock protein signature 469 485 1.8E-79 T 17-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VI35_14330 3d2d2e8cab1f350df1d268b74f65e869 642 PRINTS PR00301 70kDa heat shock protein signature 54 62 1.8E-79 T 17-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VI35_14330 3d2d2e8cab1f350df1d268b74f65e869 642 PRINTS PR00301 70kDa heat shock protein signature 334 350 1.8E-79 T 17-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VI35_14330 3d2d2e8cab1f350df1d268b74f65e869 642 PRINTS PR00301 70kDa heat shock protein signature 365 385 1.8E-79 T 17-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VI35_14330 3d2d2e8cab1f350df1d268b74f65e869 642 PRINTS PR00301 70kDa heat shock protein signature 31 43 1.8E-79 T 17-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VI35_14330 3d2d2e8cab1f350df1d268b74f65e869 642 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 17-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 VI35_14330 3d2d2e8cab1f350df1d268b74f65e869 642 Gene3D G3DSA:1.20.1270.10 524 603 2.1E-27 T 17-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 VI35_20080 0266c2ef7f726690535a3800d6da032e 457 Gene3D G3DSA:1.10.10.920 364 457 9.5E-34 T 17-10-2018 VI35_20080 0266c2ef7f726690535a3800d6da032e 457 SUPERFAMILY SSF102114 6 444 4.58E-138 T 17-10-2018 VI35_20080 0266c2ef7f726690535a3800d6da032e 457 Gene3D G3DSA:3.80.30.20 1 363 5.6E-133 T 17-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe VI35_20080 0266c2ef7f726690535a3800d6da032e 457 Pfam PF04055 Radical SAM superfamily 57 228 1.5E-19 T 17-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VI35_20080 0266c2ef7f726690535a3800d6da032e 457 SMART SM00729 52 272 3.0E-50 T 17-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 VI35_20080 0266c2ef7f726690535a3800d6da032e 457 PIRSF PIRSF000167 3 454 7.2E-168 T 17-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 VI35_20080 0266c2ef7f726690535a3800d6da032e 457 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 8 457 3.1E-204 T 17-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 VI35_20080 0266c2ef7f726690535a3800d6da032e 457 Pfam PF06969 HemN C-terminal domain 363 427 1.6E-8 T 17-10-2018 IPR010723 HemN, C-terminal VI35_05575 781c168dd7c0284f81e356d64e86e3b1 419 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 97 120 - T 17-10-2018 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 VI35_05575 781c168dd7c0284f81e356d64e86e3b1 419 SUPERFAMILY SSF51735 160 313 1.15E-36 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_05575 781c168dd7c0284f81e356d64e86e3b1 419 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 170 304 8.1E-50 T 17-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase VI35_05575 781c168dd7c0284f81e356d64e86e3b1 419 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 154 1.5E-49 T 17-10-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 VI35_05575 781c168dd7c0284f81e356d64e86e3b1 419 SUPERFAMILY SSF69742 1 156 2.22E-47 T 17-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 VI35_05575 781c168dd7c0284f81e356d64e86e3b1 419 Gene3D G3DSA:3.40.50.720 159 311 7.5E-44 T 17-10-2018 VI35_05575 781c168dd7c0284f81e356d64e86e3b1 419 SUPERFAMILY SSF69075 315 415 9.42E-29 T 17-10-2018 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 VI35_05575 781c168dd7c0284f81e356d64e86e3b1 419 PIRSF PIRSF000445 1 419 1.3E-155 T 17-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 VI35_05575 781c168dd7c0284f81e356d64e86e3b1 419 Gene3D G3DSA:3.30.460.30 1 156 5.2E-57 T 17-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 VI35_05575 781c168dd7c0284f81e356d64e86e3b1 419 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 416 31.588 T 17-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 VI35_05575 781c168dd7c0284f81e356d64e86e3b1 419 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 4 415 3.9E-144 T 17-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 VI35_05575 781c168dd7c0284f81e356d64e86e3b1 419 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 318 414 8.4E-25 T 17-10-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 VI35_07360 8157fdd3b0f314967db2af588efb6c13 363 Gene3D G3DSA:2.40.50.100 42 82 4.2E-5 T 17-10-2018 VI35_07360 8157fdd3b0f314967db2af588efb6c13 363 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 48 279 2.1E-19 T 17-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VI35_07360 8157fdd3b0f314967db2af588efb6c13 363 SUPERFAMILY SSF111369 48 97 7.59E-8 T 17-10-2018 VI35_07360 8157fdd3b0f314967db2af588efb6c13 363 Gene3D G3DSA:2.40.30.170 222 345 1.8E-26 T 17-10-2018 VI35_07360 8157fdd3b0f314967db2af588efb6c13 363 Gene3D G3DSA:1.10.287.470 106 175 7.7E-8 T 17-10-2018 VI35_07360 8157fdd3b0f314967db2af588efb6c13 363 SUPERFAMILY SSF111369 152 284 6.15E-8 T 17-10-2018 VI35_17495 527004d2b12f8014a66b1c073c353bef 366 Gene3D G3DSA:1.50.10.10 21 359 1.5E-132 T 17-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 VI35_17495 527004d2b12f8014a66b1c073c353bef 366 PRINTS PR00735 Glycosyl hydrolase family 8 signature 178 195 6.8E-20 T 17-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 VI35_17495 527004d2b12f8014a66b1c073c353bef 366 PRINTS PR00735 Glycosyl hydrolase family 8 signature 214 225 6.8E-20 T 17-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 VI35_17495 527004d2b12f8014a66b1c073c353bef 366 PRINTS PR00735 Glycosyl hydrolase family 8 signature 239 248 6.8E-20 T 17-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 VI35_17495 527004d2b12f8014a66b1c073c353bef 366 PRINTS PR00735 Glycosyl hydrolase family 8 signature 113 131 6.8E-20 T 17-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 VI35_17495 527004d2b12f8014a66b1c073c353bef 366 PRINTS PR00735 Glycosyl hydrolase family 8 signature 51 64 6.8E-20 T 17-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 VI35_17495 527004d2b12f8014a66b1c073c353bef 366 PRINTS PR00735 Glycosyl hydrolase family 8 signature 330 344 6.8E-20 T 17-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 VI35_17495 527004d2b12f8014a66b1c073c353bef 366 SUPERFAMILY SSF48208 7 350 6.8E-92 T 17-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 VI35_17495 527004d2b12f8014a66b1c073c353bef 366 Pfam PF01270 Glycosyl hydrolases family 8 6 344 2.2E-79 T 17-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 VI35_15285 2780b6c1ede18075d7a5382ca6d19972 119 Gene3D G3DSA:2.40.128.200 32 119 1.0E-20 T 17-10-2018 IPR036328 C-type lysozyme inhibitor superfamily VI35_15285 2780b6c1ede18075d7a5382ca6d19972 119 SUPERFAMILY SSF141488 33 117 2.22E-19 T 17-10-2018 IPR036328 C-type lysozyme inhibitor superfamily VI35_15285 2780b6c1ede18075d7a5382ca6d19972 119 Pfam PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme 37 107 1.5E-19 T 17-10-2018 IPR018660 C-type lysozyme inhibitor VI35_01950 19022a677685ecaa86f2d4de81b17aa2 141 Pfam PF04386 Stringent starvation protein B 8 141 5.5E-36 T 17-10-2018 IPR007481 Stringent starvation protein B VI35_01950 19022a677685ecaa86f2d4de81b17aa2 141 Gene3D G3DSA:2.30.30.220 2 126 1.6E-49 T 17-10-2018 IPR036760 SspB-like superfamily VI35_01950 19022a677685ecaa86f2d4de81b17aa2 141 SUPERFAMILY SSF101738 3 112 6.41E-48 T 17-10-2018 IPR036760 SspB-like superfamily VI35_01950 19022a677685ecaa86f2d4de81b17aa2 141 PIRSF PIRSF005276 2 141 2.1E-55 T 17-10-2018 IPR007481 Stringent starvation protein B VI35_05385 b641b415a637f21fb490e3c37341c5d6 172 PRINTS PR01100 Shikimate kinase family signature 98 115 4.7E-28 T 17-10-2018 VI35_05385 b641b415a637f21fb490e3c37341c5d6 172 PRINTS PR01100 Shikimate kinase family signature 59 67 4.7E-28 T 17-10-2018 VI35_05385 b641b415a637f21fb490e3c37341c5d6 172 PRINTS PR01100 Shikimate kinase family signature 7 22 4.7E-28 T 17-10-2018 VI35_05385 b641b415a637f21fb490e3c37341c5d6 172 PRINTS PR01100 Shikimate kinase family signature 31 44 4.7E-28 T 17-10-2018 VI35_05385 b641b415a637f21fb490e3c37341c5d6 172 PRINTS PR01100 Shikimate kinase family signature 77 86 4.7E-28 T 17-10-2018 VI35_05385 b641b415a637f21fb490e3c37341c5d6 172 Pfam PF01202 Shikimate kinase 13 169 2.3E-54 T 17-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 VI35_05385 b641b415a637f21fb490e3c37341c5d6 172 ProSitePatterns PS01128 Shikimate kinase signature. 60 85 - T 17-10-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 VI35_05385 b641b415a637f21fb490e3c37341c5d6 172 Hamap MF_00109 Shikimate kinase [aroK]. 4 171 28.672 T 17-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 VI35_05385 b641b415a637f21fb490e3c37341c5d6 172 SUPERFAMILY SSF52540 4 170 2.44E-33 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_05385 b641b415a637f21fb490e3c37341c5d6 172 Gene3D G3DSA:3.40.50.300 1 171 3.8E-56 T 17-10-2018 VI35_03870 32f8c41cc0b7df22e4754decec798de0 167 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 54 133 6.4E-25 T 17-10-2018 IPR010221 VCBS repeat VI35_03870 32f8c41cc0b7df22e4754decec798de0 167 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 1 36 4.9E-6 T 17-10-2018 IPR010221 VCBS repeat VI35_16335 8ec07995e77a511537bcd2a560bdf7f6 289 SUPERFAMILY SSF52540 4 286 1.65E-49 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_16335 8ec07995e77a511537bcd2a560bdf7f6 289 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 7 214 2.8E-72 T 17-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 VI35_16335 8ec07995e77a511537bcd2a560bdf7f6 289 PRINTS PR00478 Phosphoribulokinase family signature 12 29 1.7E-29 T 17-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 VI35_16335 8ec07995e77a511537bcd2a560bdf7f6 289 PRINTS PR00478 Phosphoribulokinase family signature 164 181 1.7E-29 T 17-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 VI35_16335 8ec07995e77a511537bcd2a560bdf7f6 289 PRINTS PR00478 Phosphoribulokinase family signature 126 144 1.7E-29 T 17-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 VI35_16335 8ec07995e77a511537bcd2a560bdf7f6 289 PRINTS PR00478 Phosphoribulokinase family signature 182 205 1.7E-29 T 17-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 VI35_16335 8ec07995e77a511537bcd2a560bdf7f6 289 Gene3D G3DSA:3.40.50.300 1 289 4.3E-113 T 17-10-2018 VI35_16335 8ec07995e77a511537bcd2a560bdf7f6 289 ProSitePatterns PS00567 Phosphoribulokinase signature. 164 177 - T 17-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 VI35_19795 1b37f0abccebe1e57478612f7d1a520d 145 Gene3D G3DSA:3.100.10.10 71 145 1.7E-11 T 17-10-2018 VI35_19795 1b37f0abccebe1e57478612f7d1a520d 145 ProSitePatterns PS00475 Ribosomal protein L15 signature. 110 140 - T 17-10-2018 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19795 1b37f0abccebe1e57478612f7d1a520d 145 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 144 1.4E-26 T 17-10-2018 IPR021131 Ribosomal protein L18e/L15P VI35_19795 1b37f0abccebe1e57478612f7d1a520d 145 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 144 8.2E-43 T 17-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_19795 1b37f0abccebe1e57478612f7d1a520d 145 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 145 17.54 T 17-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 VI35_19795 1b37f0abccebe1e57478612f7d1a520d 145 SUPERFAMILY SSF52080 4 144 1.13E-40 T 17-10-2018 IPR036227 Ribosomal L18e/L15P superfamily VI35_04485 f19b8d537b16011945f970c0a2fea8e5 319 Gene3D G3DSA:1.10.3720.10 103 302 1.2E-19 T 17-10-2018 IPR035906 MetI-like superfamily VI35_04485 f19b8d537b16011945f970c0a2fea8e5 319 SUPERFAMILY SSF161098 103 300 2.35E-22 T 17-10-2018 IPR035906 MetI-like superfamily VI35_04485 f19b8d537b16011945f970c0a2fea8e5 319 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 127 299 6.2E-16 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_12035 196a5c93d5d1ffac213f9abd7beba04b 388 SMART SM00028 179 212 230.0 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_12035 196a5c93d5d1ffac213f9abd7beba04b 388 SMART SM00028 35 68 190.0 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_12035 196a5c93d5d1ffac213f9abd7beba04b 388 SMART SM00028 213 246 45.0 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_12035 196a5c93d5d1ffac213f9abd7beba04b 388 SMART SM00028 69 102 40.0 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_12035 196a5c93d5d1ffac213f9abd7beba04b 388 Gene3D G3DSA:1.25.40.10 38 173 3.3E-12 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_12035 196a5c93d5d1ffac213f9abd7beba04b 388 Pfam PF13176 Tetratricopeptide repeat 71 94 0.034 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_12035 196a5c93d5d1ffac213f9abd7beba04b 388 Pfam PF13432 Tetratricopeptide repeat 184 238 3.6E-8 T 17-10-2018 VI35_12035 196a5c93d5d1ffac213f9abd7beba04b 388 SUPERFAMILY SSF48452 34 314 2.15E-17 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_12035 196a5c93d5d1ffac213f9abd7beba04b 388 Hamap MF_00994 Lipopolysaccharide assembly protein B [lapB]. 4 386 36.054 T 17-10-2018 IPR030865 Lipopolysaccharide assembly protein B GO:0008653 VI35_12035 196a5c93d5d1ffac213f9abd7beba04b 388 Gene3D G3DSA:1.25.40.10 174 355 6.6E-14 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_04370 0f76814983589a73035019fd21950618 254 Pfam PF11932 Protein of unknown function (DUF3450) 10 248 2.1E-89 T 17-10-2018 IPR016866 Uncharacterised conserved protein UCP028069 VI35_04370 0f76814983589a73035019fd21950618 254 PIRSF PIRSF028069 2 254 1.0E-86 T 17-10-2018 IPR016866 Uncharacterised conserved protein UCP028069 VI35_17330 d24b06f680ed0ae17e50a272023da5e4 441 Hamap MF_00671 Tol-Pal system protein TolB [tolB]. 5 436 50.312 T 17-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 VI35_17330 d24b06f680ed0ae17e50a272023da5e4 441 Gene3D G3DSA:2.120.10.30 175 441 1.4E-94 T 17-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like VI35_17330 d24b06f680ed0ae17e50a272023da5e4 441 Pfam PF04052 TolB amino-terminal domain 23 125 4.7E-35 T 17-10-2018 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 VI35_17330 d24b06f680ed0ae17e50a272023da5e4 441 SUPERFAMILY SSF52964 28 171 1.7E-42 T 17-10-2018 VI35_17330 d24b06f680ed0ae17e50a272023da5e4 441 SUPERFAMILY SSF69304 166 438 1.44E-57 T 17-10-2018 VI35_17330 d24b06f680ed0ae17e50a272023da5e4 441 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 14 437 3.6E-165 T 17-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 VI35_17330 d24b06f680ed0ae17e50a272023da5e4 441 Pfam PF07676 WD40-like Beta Propeller Repeat 345 368 0.2 T 17-10-2018 IPR011659 WD40-like Beta Propeller VI35_17330 d24b06f680ed0ae17e50a272023da5e4 441 Pfam PF07676 WD40-like Beta Propeller Repeat 380 402 0.3 T 17-10-2018 IPR011659 WD40-like Beta Propeller VI35_17330 d24b06f680ed0ae17e50a272023da5e4 441 Pfam PF07676 WD40-like Beta Propeller Repeat 248 282 1.8E-9 T 17-10-2018 IPR011659 WD40-like Beta Propeller VI35_17330 d24b06f680ed0ae17e50a272023da5e4 441 Pfam PF07676 WD40-like Beta Propeller Repeat 211 238 1.2E-7 T 17-10-2018 IPR011659 WD40-like Beta Propeller VI35_17330 d24b06f680ed0ae17e50a272023da5e4 441 Pfam PF07676 WD40-like Beta Propeller Repeat 290 325 9.8E-13 T 17-10-2018 IPR011659 WD40-like Beta Propeller VI35_17330 d24b06f680ed0ae17e50a272023da5e4 441 Gene3D G3DSA:3.40.50.10070 19 174 3.5E-49 T 17-10-2018 IPR036752 TolB, N-terminal domain superfamily GO:0015031|GO:0042597 VI35_06230 a2d84b65d59fb387b3a8374cc0051eeb 383 Gene3D G3DSA:1.20.1090.10 186 383 7.9E-74 T 17-10-2018 VI35_06230 a2d84b65d59fb387b3a8374cc0051eeb 383 Gene3D G3DSA:3.40.50.1970 1 184 5.6E-59 T 17-10-2018 VI35_06230 a2d84b65d59fb387b3a8374cc0051eeb 383 Pfam PF00465 Iron-containing alcohol dehydrogenase 12 375 6.0E-126 T 17-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 VI35_06230 a2d84b65d59fb387b3a8374cc0051eeb 383 SUPERFAMILY SSF56796 3 382 6.02E-133 T 17-10-2018 VI35_06230 a2d84b65d59fb387b3a8374cc0051eeb 383 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 173 201 - T 17-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 VI35_06230 a2d84b65d59fb387b3a8374cc0051eeb 383 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 260 280 - T 17-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 VI35_16730 e6c47f4ac1270f541d4ee199c685f3c6 154 PIRSF PIRSF000239 1 142 2.5E-18 T 17-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 VI35_16730 e6c47f4ac1270f541d4ee199c685f3c6 154 Pfam PF00578 AhpC/TSA family 7 134 2.8E-39 T 17-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 VI35_16730 e6c47f4ac1270f541d4ee199c685f3c6 154 SUPERFAMILY SSF52833 3 153 1.68E-49 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_16730 e6c47f4ac1270f541d4ee199c685f3c6 154 Gene3D G3DSA:3.40.30.10 4 154 2.1E-48 T 17-10-2018 VI35_01235 5373307d8fa7f8f5230389271cef5c69 669 SMART SM00436 126 221 6.1E-36 T 17-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 VI35_01235 5373307d8fa7f8f5230389271cef5c69 669 TIGRFAM TIGR01056 topB: DNA topoisomerase III 1 645 2.0E-242 T 17-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 VI35_01235 5373307d8fa7f8f5230389271cef5c69 669 SMART SM00437 278 557 4.1E-93 T 17-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 VI35_01235 5373307d8fa7f8f5230389271cef5c69 669 Pfam PF01131 DNA topoisomerase 155 591 1.0E-115 T 17-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VI35_01235 5373307d8fa7f8f5230389271cef5c69 669 Pfam PF01751 Toprim domain 3 133 1.8E-13 T 17-10-2018 IPR006171 TOPRIM domain VI35_01235 5373307d8fa7f8f5230389271cef5c69 669 Gene3D G3DSA:1.10.460.10 160 599 1.2E-164 T 17-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 VI35_01235 5373307d8fa7f8f5230389271cef5c69 669 Gene3D G3DSA:3.40.50.140 1 154 1.3E-59 T 17-10-2018 VI35_01235 5373307d8fa7f8f5230389271cef5c69 669 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 321 330 7.4E-24 T 17-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VI35_01235 5373307d8fa7f8f5230389271cef5c69 669 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 98 111 7.4E-24 T 17-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VI35_01235 5373307d8fa7f8f5230389271cef5c69 669 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 402 418 7.4E-24 T 17-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VI35_01235 5373307d8fa7f8f5230389271cef5c69 669 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 520 534 7.4E-24 T 17-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VI35_01235 5373307d8fa7f8f5230389271cef5c69 669 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 191 209 7.4E-24 T 17-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VI35_01235 5373307d8fa7f8f5230389271cef5c69 669 SUPERFAMILY SSF56712 1 605 3.01E-186 T 17-10-2018 IPR023405 DNA topoisomerase, type IA, core domain VI35_01235 5373307d8fa7f8f5230389271cef5c69 669 Gene3D G3DSA:1.10.290.10 287 416 1.2E-164 T 17-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 VI35_01235 5373307d8fa7f8f5230389271cef5c69 669 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 315 330 - T 17-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 VI35_01235 5373307d8fa7f8f5230389271cef5c69 669 Gene3D G3DSA:2.70.20.10 215 487 1.2E-164 T 17-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 VI35_01235 5373307d8fa7f8f5230389271cef5c69 669 Hamap MF_00953 DNA topoisomerase 3 [topB]. 1 644 59.311 T 17-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 VI35_01235 5373307d8fa7f8f5230389271cef5c69 669 SMART SM00493 1 124 9.9E-20 T 17-10-2018 IPR006171 TOPRIM domain VI35_09170 51d2749a18dedc881772bea744d5bd0d 1020 SUPERFAMILY SSF82866 794 1016 3.14E-42 T 17-10-2018 VI35_09170 51d2749a18dedc881772bea744d5bd0d 1020 Pfam PF00873 AcrB/AcrD/AcrF family 9 1010 5.8E-146 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_09170 51d2749a18dedc881772bea744d5bd0d 1020 Gene3D G3DSA:1.20.1640.10 17 506 1.8E-228 T 17-10-2018 VI35_09170 51d2749a18dedc881772bea744d5bd0d 1020 Gene3D G3DSA:3.30.2090.10 709 797 1.8E-228 T 17-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VI35_09170 51d2749a18dedc881772bea744d5bd0d 1020 SUPERFAMILY SSF82714 190 271 3.01E-13 T 17-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VI35_09170 51d2749a18dedc881772bea744d5bd0d 1020 SUPERFAMILY SSF82714 710 795 1.44E-12 T 17-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VI35_09170 51d2749a18dedc881772bea744d5bd0d 1020 Gene3D G3DSA:1.20.1640.10 507 1009 1.8E-228 T 17-10-2018 VI35_09170 51d2749a18dedc881772bea744d5bd0d 1020 PRINTS PR00702 Acriflavin resistance protein family signature 43 61 3.8E-20 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_09170 51d2749a18dedc881772bea744d5bd0d 1020 PRINTS PR00702 Acriflavin resistance protein family signature 389 413 3.8E-20 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_09170 51d2749a18dedc881772bea744d5bd0d 1020 PRINTS PR00702 Acriflavin resistance protein family signature 361 382 3.8E-20 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_09170 51d2749a18dedc881772bea744d5bd0d 1020 PRINTS PR00702 Acriflavin resistance protein family signature 442 465 3.8E-20 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_09170 51d2749a18dedc881772bea744d5bd0d 1020 PRINTS PR00702 Acriflavin resistance protein family signature 15 39 3.8E-20 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_09170 51d2749a18dedc881772bea744d5bd0d 1020 PRINTS PR00702 Acriflavin resistance protein family signature 467 490 3.8E-20 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_09170 51d2749a18dedc881772bea744d5bd0d 1020 SUPERFAMILY SSF82693 45 140 9.55E-15 T 17-10-2018 VI35_09170 51d2749a18dedc881772bea744d5bd0d 1020 SUPERFAMILY SSF82693 143 328 3.77E-14 T 17-10-2018 VI35_09170 51d2749a18dedc881772bea744d5bd0d 1020 Gene3D G3DSA:3.30.70.1440 658 857 1.8E-228 T 17-10-2018 VI35_09170 51d2749a18dedc881772bea744d5bd0d 1020 Gene3D G3DSA:3.30.70.1430 558 657 1.8E-228 T 17-10-2018 VI35_09170 51d2749a18dedc881772bea744d5bd0d 1020 SUPERFAMILY SSF82866 298 493 5.89E-35 T 17-10-2018 VI35_09170 51d2749a18dedc881772bea744d5bd0d 1020 SUPERFAMILY SSF82693 557 646 1.73E-6 T 17-10-2018 VI35_09170 51d2749a18dedc881772bea744d5bd0d 1020 Gene3D G3DSA:3.30.70.1430 45 805 1.8E-228 T 17-10-2018 VI35_09170 51d2749a18dedc881772bea744d5bd0d 1020 Gene3D G3DSA:3.30.2090.10 184 273 1.8E-228 T 17-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VI35_09170 51d2749a18dedc881772bea744d5bd0d 1020 Gene3D G3DSA:3.30.70.1320 142 331 1.8E-228 T 17-10-2018 VI35_19325 88071684a10938d4c99687efc0bb454e 406 Gene3D G3DSA:3.30.750.24 289 402 1.1E-32 T 17-10-2018 IPR036513 STAS domain superfamily VI35_19325 88071684a10938d4c99687efc0bb454e 406 Pfam PF08447 PAS fold 163 248 1.9E-14 T 17-10-2018 IPR013655 PAS fold-3 GO:0005515 VI35_19325 88071684a10938d4c99687efc0bb454e 406 SMART SM00091 16 85 0.0013 T 17-10-2018 IPR000014 PAS domain VI35_19325 88071684a10938d4c99687efc0bb454e 406 SMART SM00091 138 208 1.3 T 17-10-2018 IPR000014 PAS domain VI35_19325 88071684a10938d4c99687efc0bb454e 406 Pfam PF13426 PAS domain 35 132 8.7E-14 T 17-10-2018 IPR000014 PAS domain VI35_19325 88071684a10938d4c99687efc0bb454e 406 SMART SM00086 91 133 0.076 T 17-10-2018 IPR001610 PAC motif VI35_19325 88071684a10938d4c99687efc0bb454e 406 SMART SM00086 213 255 0.0035 T 17-10-2018 IPR001610 PAC motif VI35_19325 88071684a10938d4c99687efc0bb454e 406 Pfam PF01740 STAS domain 295 394 2.9E-7 T 17-10-2018 IPR002645 STAS domain VI35_19325 88071684a10938d4c99687efc0bb454e 406 SUPERFAMILY SSF55785 152 252 6.11E-25 T 17-10-2018 IPR035965 PAS domain superfamily VI35_19325 88071684a10938d4c99687efc0bb454e 406 Gene3D G3DSA:3.30.450.20 16 154 3.1E-22 T 17-10-2018 VI35_19325 88071684a10938d4c99687efc0bb454e 406 SUPERFAMILY SSF55785 32 135 3.32E-22 T 17-10-2018 IPR035965 PAS domain superfamily VI35_19325 88071684a10938d4c99687efc0bb454e 406 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 33 138 1.9E-14 T 17-10-2018 IPR000014 PAS domain VI35_19325 88071684a10938d4c99687efc0bb454e 406 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 155 260 1.7E-14 T 17-10-2018 IPR000014 PAS domain VI35_19325 88071684a10938d4c99687efc0bb454e 406 SUPERFAMILY SSF52091 286 398 1.84E-16 T 17-10-2018 IPR036513 STAS domain superfamily VI35_19325 88071684a10938d4c99687efc0bb454e 406 Gene3D G3DSA:3.30.450.20 155 288 8.9E-26 T 17-10-2018 VI35_03915 30b47f73121b7025f01e3712ed9aa0af 201 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 10 62 2.5E-14 T 17-10-2018 IPR010221 VCBS repeat VI35_03915 30b47f73121b7025f01e3712ed9aa0af 201 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 80 170 1.0E-26 T 17-10-2018 IPR010221 VCBS repeat VI35_12030 74265313acddb4742096530c9d8a9718 232 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 5 223 3.6E-48 T 17-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VI35_12030 74265313acddb4742096530c9d8a9718 232 SMART SM00934 5 226 1.7E-95 T 17-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VI35_12030 74265313acddb4742096530c9d8a9718 232 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 7 226 1.1E-57 T 17-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VI35_12030 74265313acddb4742096530c9d8a9718 232 SUPERFAMILY SSF51366 3 229 6.77E-75 T 17-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 VI35_12030 74265313acddb4742096530c9d8a9718 232 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 57 70 - T 17-10-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VI35_12030 74265313acddb4742096530c9d8a9718 232 Gene3D G3DSA:3.20.20.70 1 231 1.0E-80 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_12030 74265313acddb4742096530c9d8a9718 232 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 3 231 39.518 T 17-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VI35_17740 553088e2f7a84892e20ae5d499acf340 148 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 47 8.2E-22 T 17-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_17740 553088e2f7a84892e20ae5d499acf340 148 Gene3D G3DSA:3.10.430.100 62 147 2.1E-26 T 17-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily VI35_17740 553088e2f7a84892e20ae5d499acf340 148 SUPERFAMILY SSF55653 61 147 2.49E-23 T 17-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily VI35_17740 553088e2f7a84892e20ae5d499acf340 148 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 147 2.3E-24 T 17-10-2018 IPR020069 Ribosomal protein L9, C-terminal VI35_17740 553088e2f7a84892e20ae5d499acf340 148 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 17-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_17740 553088e2f7a84892e20ae5d499acf340 148 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 147 1.1E-51 T 17-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_17740 553088e2f7a84892e20ae5d499acf340 148 Gene3D G3DSA:3.40.5.10 1 50 4.3E-23 T 17-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_17740 553088e2f7a84892e20ae5d499acf340 148 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 148 24.565 T 17-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_17740 553088e2f7a84892e20ae5d499acf340 148 SUPERFAMILY SSF55658 1 57 6.98E-18 T 17-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal VI35_19770 c65935c8ef8dc1691e8dfee2de3ab4d8 206 SMART SM00363 96 160 4.3E-18 T 17-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19770 c65935c8ef8dc1691e8dfee2de3ab4d8 206 ProSitePatterns PS00632 Ribosomal protein S4 signature. 94 118 - T 17-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19770 c65935c8ef8dc1691e8dfee2de3ab4d8 206 Gene3D G3DSA:3.10.290.10 103 191 7.2E-35 T 17-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 VI35_19770 c65935c8ef8dc1691e8dfee2de3ab4d8 206 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 206 36.147 T 17-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 VI35_19770 c65935c8ef8dc1691e8dfee2de3ab4d8 206 Gene3D G3DSA:1.10.1050.10 1 102 6.8E-45 T 17-10-2018 VI35_19770 c65935c8ef8dc1691e8dfee2de3ab4d8 206 SMART SM01390 3 95 8.6E-52 T 17-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 VI35_19770 c65935c8ef8dc1691e8dfee2de3ab4d8 206 SUPERFAMILY SSF55174 3 206 1.3E-71 T 17-10-2018 VI35_19770 c65935c8ef8dc1691e8dfee2de3ab4d8 206 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 206 3.8E-85 T 17-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 VI35_19770 c65935c8ef8dc1691e8dfee2de3ab4d8 206 Pfam PF01479 S4 domain 97 143 4.8E-17 T 17-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19770 c65935c8ef8dc1691e8dfee2de3ab4d8 206 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 95 7.4E-33 T 17-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 VI35_09130 8e50d700d75f0e689940b9b082573b90 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 1.4E-28 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_09130 8e50d700d75f0e689940b9b082573b90 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 72 83 1.4E-28 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_09130 8e50d700d75f0e689940b9b082573b90 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 1.4E-28 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_09130 8e50d700d75f0e689940b9b082573b90 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 1.4E-28 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_09130 8e50d700d75f0e689940b9b082573b90 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.4E-28 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_09130 8e50d700d75f0e689940b9b082573b90 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 1.4E-28 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_09130 8e50d700d75f0e689940b9b082573b90 270 SUPERFAMILY SSF51735 2 263 1.5E-61 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_09130 8e50d700d75f0e689940b9b082573b90 270 Gene3D G3DSA:3.40.50.720 5 253 8.0E-64 T 17-10-2018 VI35_09130 8e50d700d75f0e689940b9b082573b90 270 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 72 83 2.6E-10 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_09130 8e50d700d75f0e689940b9b082573b90 270 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 2.6E-10 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_09130 8e50d700d75f0e689940b9b082573b90 270 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 134 2.6E-10 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_09130 8e50d700d75f0e689940b9b082573b90 270 Pfam PF00106 short chain dehydrogenase 7 188 3.9E-48 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_03300 c6015ed2416d6c82aa986cb485b6e984 299 SUPERFAMILY SSF52540 10 205 2.59E-46 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_03300 c6015ed2416d6c82aa986cb485b6e984 299 Pfam PF07650 KH domain 208 284 2.7E-19 T 17-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_03300 c6015ed2416d6c82aa986cb485b6e984 299 Pfam PF01926 50S ribosome-binding GTPase 10 124 6.9E-24 T 17-10-2018 IPR006073 GTP binding domain GO:0005525 VI35_03300 c6015ed2416d6c82aa986cb485b6e984 299 TIGRFAM TIGR00436 era: GTP-binding protein Era 8 279 1.6E-113 T 17-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_03300 c6015ed2416d6c82aa986cb485b6e984 299 Hamap MF_00367 GTPase Era [era]. 5 296 35.932 T 17-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_03300 c6015ed2416d6c82aa986cb485b6e984 299 Gene3D G3DSA:3.30.300.20 185 299 1.0E-43 T 17-10-2018 IPR015946 K homology domain-like, alpha/beta VI35_03300 c6015ed2416d6c82aa986cb485b6e984 299 Gene3D G3DSA:3.40.50.300 2 183 6.6E-52 T 17-10-2018 VI35_03300 c6015ed2416d6c82aa986cb485b6e984 299 SUPERFAMILY SSF54814 181 296 1.5E-43 T 17-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 VI35_03300 c6015ed2416d6c82aa986cb485b6e984 299 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 166 9.5E-36 T 17-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VI35_11595 4b7032ecb6a3141ef90dbb06ee4bb056 824 Pfam PF00343 Carbohydrate phosphorylase 104 818 0.0 T 17-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 VI35_11595 4b7032ecb6a3141ef90dbb06ee4bb056 824 Gene3D G3DSA:3.40.50.2000 479 803 8.6E-137 T 17-10-2018 VI35_11595 4b7032ecb6a3141ef90dbb06ee4bb056 824 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 14 818 0.0 T 17-10-2018 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 VI35_11595 4b7032ecb6a3141ef90dbb06ee4bb056 824 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 662 674 - T 17-10-2018 IPR035090 Phosphorylase pyridoxal-phosphate attachment site KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 VI35_11595 4b7032ecb6a3141ef90dbb06ee4bb056 824 SUPERFAMILY SSF53756 11 822 0.0 T 17-10-2018 VI35_11595 4b7032ecb6a3141ef90dbb06ee4bb056 824 Gene3D G3DSA:3.40.50.2000 2 478 5.4E-198 T 17-10-2018 VI35_11595 4b7032ecb6a3141ef90dbb06ee4bb056 824 PIRSF PIRSF000460 1 824 1.3E-222 T 17-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 VI35_14965 5eac4c711cdad663d75831d722ec6ecc 302 Gene3D G3DSA:3.40.50.720 1 118 2.1E-24 T 17-10-2018 VI35_14965 5eac4c711cdad663d75831d722ec6ecc 302 SUPERFAMILY SSF55347 121 260 7.63E-34 T 17-10-2018 VI35_14965 5eac4c711cdad663d75831d722ec6ecc 302 Gene3D G3DSA:3.30.360.10 119 301 2.4E-48 T 17-10-2018 VI35_14965 5eac4c711cdad663d75831d722ec6ecc 302 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 1 119 2.4E-14 T 17-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 VI35_14965 5eac4c711cdad663d75831d722ec6ecc 302 SUPERFAMILY SSF51735 1 132 4.08E-32 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_21155 0f0fd4780824fa51b1a5d026f9cb2ee8 302 SUPERFAMILY SSF110849 45 181 1.41E-35 T 17-10-2018 IPR036086 ParB/Sulfiredoxin superfamily VI35_21155 0f0fd4780824fa51b1a5d026f9cb2ee8 302 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 43 218 9.6E-57 T 17-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 VI35_21155 0f0fd4780824fa51b1a5d026f9cb2ee8 302 Pfam PF02195 ParB-like nuclease domain 48 136 5.1E-26 T 17-10-2018 IPR003115 ParB/Sulfiredoxin VI35_21155 0f0fd4780824fa51b1a5d026f9cb2ee8 302 Gene3D G3DSA:1.10.10.2830 123 236 1.9E-35 T 17-10-2018 VI35_21155 0f0fd4780824fa51b1a5d026f9cb2ee8 302 Gene3D G3DSA:3.90.1530.30 59 122 1.8E-26 T 17-10-2018 VI35_21155 0f0fd4780824fa51b1a5d026f9cb2ee8 302 SMART SM00470 46 136 2.9E-32 T 17-10-2018 IPR003115 ParB/Sulfiredoxin VI35_05070 1f27b00e48bbc58888129c8e6d39fe92 113 Gene3D G3DSA:3.30.460.10 2 113 2.3E-37 T 17-10-2018 VI35_05070 1f27b00e48bbc58888129c8e6d39fe92 113 SUPERFAMILY SSF81301 3 111 7.68E-39 T 17-10-2018 VI35_05070 1f27b00e48bbc58888129c8e6d39fe92 113 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 7 104 4.4E-38 T 17-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS VI35_05070 1f27b00e48bbc58888129c8e6d39fe92 113 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 3 105 24.806 T 17-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS VI35_05070 1f27b00e48bbc58888129c8e6d39fe92 113 Pfam PF02410 Ribosomal silencing factor during starvation 10 104 1.9E-27 T 17-10-2018 VI35_17035 c922bf63ca50378b278bb2ec49bd504b 308 Pfam PF00583 Acetyltransferase (GNAT) family 193 279 5.6E-11 T 17-10-2018 IPR000182 GNAT domain VI35_17035 c922bf63ca50378b278bb2ec49bd504b 308 SUPERFAMILY SSF55729 144 302 3.95E-29 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_17035 c922bf63ca50378b278bb2ec49bd504b 308 SMART SM00347 22 121 3.1E-18 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_17035 c922bf63ca50378b278bb2ec49bd504b 308 SUPERFAMILY SSF46785 6 135 1.06E-24 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_17035 c922bf63ca50378b278bb2ec49bd504b 308 ProSitePatterns PS01117 MarR-type HTH domain signature. 60 94 - T 17-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site VI35_17035 c922bf63ca50378b278bb2ec49bd504b 308 Gene3D G3DSA:1.10.10.10 4 134 1.4E-25 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_17035 c922bf63ca50378b278bb2ec49bd504b 308 Gene3D G3DSA:3.40.630.30 141 303 3.6E-26 T 17-10-2018 VI35_17035 c922bf63ca50378b278bb2ec49bd504b 308 Pfam PF12802 MarR family 28 85 1.1E-10 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_03005 d3218f50ff600b44004225275d8b0da6 493 Gene3D G3DSA:3.30.450.20 17 150 3.2E-23 T 17-10-2018 VI35_03005 d3218f50ff600b44004225275d8b0da6 493 SMART SM00065 161 321 1.3E-6 T 17-10-2018 IPR003018 GAF domain GO:0005515 VI35_03005 d3218f50ff600b44004225275d8b0da6 493 SUPERFAMILY SSF55785 30 130 3.14E-26 T 17-10-2018 IPR035965 PAS domain superfamily VI35_03005 d3218f50ff600b44004225275d8b0da6 493 SUPERFAMILY SSF55073 336 492 3.77E-45 T 17-10-2018 IPR029787 Nucleotide cyclase VI35_03005 d3218f50ff600b44004225275d8b0da6 493 SMART SM00086 90 132 9.1E-5 T 17-10-2018 IPR001610 PAC motif VI35_03005 d3218f50ff600b44004225275d8b0da6 493 Pfam PF13185 GAF domain 160 311 7.1E-20 T 17-10-2018 IPR003018 GAF domain GO:0005515 VI35_03005 d3218f50ff600b44004225275d8b0da6 493 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 328 492 1.4E-48 T 17-10-2018 IPR000160 GGDEF domain VI35_03005 d3218f50ff600b44004225275d8b0da6 493 SMART SM00091 19 85 3.0E-5 T 17-10-2018 IPR000014 PAS domain VI35_03005 d3218f50ff600b44004225275d8b0da6 493 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 29 138 1.1E-21 T 17-10-2018 IPR000014 PAS domain VI35_03005 d3218f50ff600b44004225275d8b0da6 493 Pfam PF08448 PAS fold 34 131 2.1E-15 T 17-10-2018 IPR013656 PAS fold-4 VI35_03005 d3218f50ff600b44004225275d8b0da6 493 Gene3D G3DSA:3.30.450.40 157 320 3.5E-16 T 17-10-2018 IPR029016 GAF-like domain superfamily VI35_03005 d3218f50ff600b44004225275d8b0da6 493 SUPERFAMILY SSF55781 147 328 1.74E-16 T 17-10-2018 VI35_03005 d3218f50ff600b44004225275d8b0da6 493 Pfam PF00990 Diguanylate cyclase, GGDEF domain 331 491 6.6E-46 T 17-10-2018 IPR000160 GGDEF domain VI35_03005 d3218f50ff600b44004225275d8b0da6 493 Gene3D G3DSA:3.30.70.270 321 493 8.0E-53 T 17-10-2018 VI35_03005 d3218f50ff600b44004225275d8b0da6 493 SMART SM00267 320 493 2.7E-52 T 17-10-2018 IPR000160 GGDEF domain VI35_13985 bebe49cfd22ba599c0f89ebd0bf6a666 391 PRINTS PR00173 Glutamate-aspartate symporter signature 39 59 1.5E-8 T 17-10-2018 VI35_13985 bebe49cfd22ba599c0f89ebd0bf6a666 391 PRINTS PR00173 Glutamate-aspartate symporter signature 331 351 1.5E-8 T 17-10-2018 VI35_13985 bebe49cfd22ba599c0f89ebd0bf6a666 391 PRINTS PR00173 Glutamate-aspartate symporter signature 266 292 1.5E-8 T 17-10-2018 VI35_13985 bebe49cfd22ba599c0f89ebd0bf6a666 391 PRINTS PR00173 Glutamate-aspartate symporter signature 1 18 1.5E-8 T 17-10-2018 VI35_13985 bebe49cfd22ba599c0f89ebd0bf6a666 391 Pfam PF00375 Sodium:dicarboxylate symporter family 3 376 1.3E-76 T 17-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 VI35_13985 bebe49cfd22ba599c0f89ebd0bf6a666 391 SUPERFAMILY SSF118215 3 376 6.67E-76 T 17-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 VI35_13985 bebe49cfd22ba599c0f89ebd0bf6a666 391 Gene3D G3DSA:1.10.3860.10 1 379 3.9E-47 T 17-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 VI35_18280 2bc8f96af8c118231ce2375ef55298e0 128 PIRSF PIRSF028141 1 120 8.3E-47 T 17-10-2018 IPR027021 Cyclic di-GMP binding protein, PA4608 type VI35_18280 2bc8f96af8c118231ce2375ef55298e0 128 SUPERFAMILY SSF141371 1 120 7.46E-33 T 17-10-2018 VI35_18280 2bc8f96af8c118231ce2375ef55298e0 128 Pfam PF07238 PilZ domain 3 100 5.9E-9 T 17-10-2018 IPR009875 PilZ domain GO:0035438 VI35_18280 2bc8f96af8c118231ce2375ef55298e0 128 Gene3D G3DSA:2.40.10.220 1 124 1.4E-35 T 17-10-2018 VI35_12110 bce3e9e65f641173e1d0cb162cc033f8 340 Gene3D G3DSA:3.40.50.2300 1 139 3.7E-27 T 17-10-2018 VI35_12110 bce3e9e65f641173e1d0cb162cc033f8 340 SUPERFAMILY SSF52172 1 117 5.83E-30 T 17-10-2018 IPR011006 CheY-like superfamily VI35_12110 bce3e9e65f641173e1d0cb162cc033f8 340 Gene3D G3DSA:3.40.1550.10 144 339 3.1E-34 T 17-10-2018 IPR028976 CheC-like superfamily VI35_12110 bce3e9e65f641173e1d0cb162cc033f8 340 Pfam PF00072 Response regulator receiver domain 3 113 2.2E-21 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_12110 bce3e9e65f641173e1d0cb162cc033f8 340 SMART SM00448 1 113 6.5E-26 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_12110 bce3e9e65f641173e1d0cb162cc033f8 340 SUPERFAMILY SSF103039 145 336 3.79E-41 T 17-10-2018 IPR028976 CheC-like superfamily VI35_06910 b0e20f4203056253f7e4c6c764890a96 549 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 333 514 1.5E-42 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_06910 b0e20f4203056253f7e4c6c764890a96 549 Pfam PF12729 Four helix bundle sensory module for signal transduction 4 171 4.3E-15 T 17-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain VI35_06910 b0e20f4203056253f7e4c6c764890a96 549 Gene3D G3DSA:1.10.287.950 212 549 2.9E-77 T 17-10-2018 VI35_06910 b0e20f4203056253f7e4c6c764890a96 549 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 315 344 5.4E-5 T 17-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VI35_06910 b0e20f4203056253f7e4c6c764890a96 549 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 414 443 5.4E-5 T 17-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VI35_06910 b0e20f4203056253f7e4c6c764890a96 549 SMART SM00304 213 272 3.3E-6 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_06910 b0e20f4203056253f7e4c6c764890a96 549 SMART SM00304 273 325 80.0 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_06910 b0e20f4203056253f7e4c6c764890a96 549 SUPERFAMILY SSF58104 246 549 1.96E-77 T 17-10-2018 VI35_06910 b0e20f4203056253f7e4c6c764890a96 549 SMART SM00283 287 548 9.5E-81 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_06910 b0e20f4203056253f7e4c6c764890a96 549 Pfam PF00672 HAMP domain 213 268 4.5E-9 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_09605 40ed69cf6550d25a9a501e8656fc41f6 413 Pfam PF00990 Diguanylate cyclase, GGDEF domain 254 406 4.9E-35 T 17-10-2018 IPR000160 GGDEF domain VI35_09605 40ed69cf6550d25a9a501e8656fc41f6 413 Gene3D G3DSA:3.40.50.2300 122 252 1.6E-29 T 17-10-2018 VI35_09605 40ed69cf6550d25a9a501e8656fc41f6 413 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 251 411 1.3E-38 T 17-10-2018 IPR000160 GGDEF domain VI35_09605 40ed69cf6550d25a9a501e8656fc41f6 413 SUPERFAMILY SSF52172 2 104 7.54E-18 T 17-10-2018 IPR011006 CheY-like superfamily VI35_09605 40ed69cf6550d25a9a501e8656fc41f6 413 Pfam PF00072 Response regulator receiver domain 5 104 5.0E-13 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_09605 40ed69cf6550d25a9a501e8656fc41f6 413 Pfam PF00072 Response regulator receiver domain 125 236 3.7E-20 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_09605 40ed69cf6550d25a9a501e8656fc41f6 413 SMART SM00267 243 411 2.9E-56 T 17-10-2018 IPR000160 GGDEF domain VI35_09605 40ed69cf6550d25a9a501e8656fc41f6 413 Gene3D G3DSA:3.30.70.270 253 412 5.9E-44 T 17-10-2018 VI35_09605 40ed69cf6550d25a9a501e8656fc41f6 413 SUPERFAMILY SSF55073 259 410 6.59E-39 T 17-10-2018 IPR029787 Nucleotide cyclase VI35_09605 40ed69cf6550d25a9a501e8656fc41f6 413 Gene3D G3DSA:3.40.50.2300 1 121 7.3E-25 T 17-10-2018 VI35_09605 40ed69cf6550d25a9a501e8656fc41f6 413 SMART SM00448 123 237 2.9E-24 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_09605 40ed69cf6550d25a9a501e8656fc41f6 413 SMART SM00448 3 111 6.4E-14 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_09605 40ed69cf6550d25a9a501e8656fc41f6 413 SUPERFAMILY SSF52172 123 263 5.98E-28 T 17-10-2018 IPR011006 CheY-like superfamily VI35_07260 ac43c234b68770802061b717a34070b2 467 Gene3D G3DSA:1.25.40.10 245 465 5.0E-16 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_07260 ac43c234b68770802061b717a34070b2 467 Pfam PF13174 Tetratricopeptide repeat 292 322 0.0081 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_07260 ac43c234b68770802061b717a34070b2 467 Pfam PF14559 Tetratricopeptide repeat 335 398 1.1E-7 T 17-10-2018 VI35_07260 ac43c234b68770802061b717a34070b2 467 SUPERFAMILY SSF48452 292 434 5.8E-14 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_07260 ac43c234b68770802061b717a34070b2 467 Pfam PF01435 Peptidase family M48 53 239 2.4E-30 T 17-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 VI35_07260 ac43c234b68770802061b717a34070b2 467 Hamap MF_00997 Beta-barrel assembly-enhancing protease [bepA]. 3 465 36.923 T 17-10-2018 IPR030873 Beta-barrel assembly-enhancing protease GO:0006508|GO:0008237|GO:0016020|GO:0061077 VI35_12195 ba945de7b1a6abe95f0f87cc56b1d21f 601 Gene3D G3DSA:3.30.460.80 4 158 1.9E-30 T 17-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12195 ba945de7b1a6abe95f0f87cc56b1d21f 601 Hamap MF_01359 NADH-quinone oxidoreductase subunit C/D [nuoC]. 17 601 69.524 T 17-10-2018 IPR023062 NADH dehydrogenase, subunit CD GO:0030964|GO:0050136|GO:0055114 KEGG: 00190+1.6.5.11 VI35_12195 ba945de7b1a6abe95f0f87cc56b1d21f 601 SUPERFAMILY SSF143243 25 230 3.4E-56 T 17-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12195 ba945de7b1a6abe95f0f87cc56b1d21f 601 SUPERFAMILY SSF56762 226 601 1.96E-121 T 17-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12195 ba945de7b1a6abe95f0f87cc56b1d21f 601 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 330 601 3.8E-104 T 17-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12195 ba945de7b1a6abe95f0f87cc56b1d21f 601 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 212 601 42.363 T 17-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12195 ba945de7b1a6abe95f0f87cc56b1d21f 601 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 216 601 1.9E-168 T 17-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12195 ba945de7b1a6abe95f0f87cc56b1d21f 601 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 106 161 5.0E-25 T 17-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12195 ba945de7b1a6abe95f0f87cc56b1d21f 601 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 253 264 - T 17-10-2018 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12195 ba945de7b1a6abe95f0f87cc56b1d21f 601 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 52 178 6.5E-38 T 17-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12195 ba945de7b1a6abe95f0f87cc56b1d21f 601 Gene3D G3DSA:1.10.645.20 215 601 7.0E-146 T 17-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12195 ba945de7b1a6abe95f0f87cc56b1d21f 601 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 50 177 2.9E-38 T 17-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_04800 7bd93a06536ab3e092656b87b585afab 621 ProSitePatterns PS00802 Transketolase signature 2. 425 441 - T 17-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VI35_04800 7bd93a06536ab3e092656b87b585afab 621 SMART SM00861 319 483 1.7E-69 T 17-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain VI35_04800 7bd93a06536ab3e092656b87b585afab 621 SUPERFAMILY SSF52922 492 620 1.03E-30 T 17-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 VI35_04800 7bd93a06536ab3e092656b87b585afab 621 SUPERFAMILY SSF52518 317 504 1.03E-59 T 17-10-2018 IPR029061 Thiamin diphosphate-binding fold VI35_04800 7bd93a06536ab3e092656b87b585afab 621 Pfam PF02779 Transketolase, pyrimidine binding domain 319 479 1.3E-40 T 17-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain VI35_04800 7bd93a06536ab3e092656b87b585afab 621 Pfam PF02780 Transketolase, C-terminal domain 495 610 8.0E-26 T 17-10-2018 IPR033248 Transketolase, C-terminal domain VI35_04800 7bd93a06536ab3e092656b87b585afab 621 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 14 282 3.2E-118 T 17-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VI35_04800 7bd93a06536ab3e092656b87b585afab 621 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 12 619 1.3E-294 T 17-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VI35_04800 7bd93a06536ab3e092656b87b585afab 621 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 10 620 46.103 T 17-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VI35_04800 7bd93a06536ab3e092656b87b585afab 621 SUPERFAMILY SSF52518 15 381 2.03E-75 T 17-10-2018 IPR029061 Thiamin diphosphate-binding fold VI35_04800 7bd93a06536ab3e092656b87b585afab 621 Gene3D G3DSA:3.40.50.920 495 621 2.6E-42 T 17-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 VI35_04800 7bd93a06536ab3e092656b87b585afab 621 Gene3D G3DSA:3.40.50.970 317 491 1.2E-67 T 17-10-2018 VI35_11345 62f04858022ab807db9e5cda15a642c3 258 Pfam PF13847 Methyltransferase domain 46 149 3.9E-15 T 17-10-2018 IPR025714 Methyltransferase domain VI35_11345 62f04858022ab807db9e5cda15a642c3 258 Hamap MF_02057 tRNA 5-carboxymethoxyuridine methyltransferase [cmoM]. 3 256 41.996 T 17-10-2018 IPR033664 tRNA 5-carboxymethoxyuridine methyltransferase GO:0008168 VI35_11345 62f04858022ab807db9e5cda15a642c3 258 SUPERFAMILY SSF53335 4 256 8.06E-37 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_11345 62f04858022ab807db9e5cda15a642c3 258 Gene3D G3DSA:3.40.50.150 10 257 6.0E-69 T 17-10-2018 VI35_15005 f3a8e3e205d00c8f783a312fb0ca077c 803 Gene3D G3DSA:3.80.30.20 369 622 2.2E-15 T 17-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe VI35_15005 f3a8e3e205d00c8f783a312fb0ca077c 803 Pfam PF11842 Domain of unknown function (DUF3362) 588 726 1.1E-44 T 17-10-2018 IPR024560 Uncharacterised protein family UPF0313, C-terminal VI35_15005 f3a8e3e205d00c8f783a312fb0ca077c 803 Hamap MF_01251 UPF0313 protein YgiQ [ygiQ]. 23 640 49.784 T 17-10-2018 IPR022946 Uncharacterised protein family UPF0313 VI35_15005 f3a8e3e205d00c8f783a312fb0ca077c 803 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 374 394 - T 17-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 VI35_15005 f3a8e3e205d00c8f783a312fb0ca077c 803 SUPERFAMILY SSF102114 354 608 5.79E-12 T 17-10-2018 VI35_15005 f3a8e3e205d00c8f783a312fb0ca077c 803 Pfam PF08497 Radical SAM N-terminal 23 373 7.3E-145 T 17-10-2018 IPR013704 Uncharacterised protein family UPF0313, N-terminal VI35_15005 f3a8e3e205d00c8f783a312fb0ca077c 803 Pfam PF04055 Radical SAM superfamily 374 579 9.9E-22 T 17-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VI35_15005 f3a8e3e205d00c8f783a312fb0ca077c 803 SMART SM00729 370 617 7.0E-9 T 17-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 VI35_15005 f3a8e3e205d00c8f783a312fb0ca077c 803 TIGRFAM TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ 23 638 4.4E-262 T 17-10-2018 IPR022946 Uncharacterised protein family UPF0313 VI35_00145 24384e2fdc39624c5193a24f6a3ff9cc 267 Pfam PF08282 haloacid dehalogenase-like hydrolase 5 258 2.2E-67 T 17-10-2018 VI35_00145 24384e2fdc39624c5193a24f6a3ff9cc 267 Gene3D G3DSA:3.30.1240.10 82 185 2.2E-73 T 17-10-2018 VI35_00145 24384e2fdc39624c5193a24f6a3ff9cc 267 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 229 2.3E-34 T 17-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 VI35_00145 24384e2fdc39624c5193a24f6a3ff9cc 267 ProSitePatterns PS01228 Hypothetical cof family signature 1. 4 15 - T 17-10-2018 VI35_00145 24384e2fdc39624c5193a24f6a3ff9cc 267 ProSitePatterns PS01229 Hypothetical cof family signature 2. 210 232 - T 17-10-2018 VI35_00145 24384e2fdc39624c5193a24f6a3ff9cc 267 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 4 258 8.3E-64 T 17-10-2018 IPR000150 Cof family GO:0016787 VI35_00145 24384e2fdc39624c5193a24f6a3ff9cc 267 Gene3D G3DSA:3.40.50.1000 3 259 2.2E-73 T 17-10-2018 IPR023214 HAD superfamily VI35_00145 24384e2fdc39624c5193a24f6a3ff9cc 267 SUPERFAMILY SSF56784 1 262 4.47E-76 T 17-10-2018 IPR036412 HAD-like superfamily VI35_00985 1525b3cfbd09e931bc61bcf6e3041d26 506 Gene3D G3DSA:3.40.50.300 1 246 8.7E-58 T 17-10-2018 VI35_00985 1525b3cfbd09e931bc61bcf6e3041d26 506 Pfam PF00005 ABC transporter 29 178 1.7E-28 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_00985 1525b3cfbd09e931bc61bcf6e3041d26 506 Gene3D G3DSA:3.40.50.300 262 500 5.1E-39 T 17-10-2018 VI35_00985 1525b3cfbd09e931bc61bcf6e3041d26 506 SUPERFAMILY SSF52540 12 234 6.68E-56 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_00985 1525b3cfbd09e931bc61bcf6e3041d26 506 Pfam PF00005 ABC transporter 280 434 1.1E-18 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_00985 1525b3cfbd09e931bc61bcf6e3041d26 506 ProSitePatterns PS00211 ABC transporters family signature. 407 421 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_00985 1525b3cfbd09e931bc61bcf6e3041d26 506 SUPERFAMILY SSF52540 253 492 5.13E-41 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_00985 1525b3cfbd09e931bc61bcf6e3041d26 506 SMART SM00382 38 233 1.8E-8 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_00985 1525b3cfbd09e931bc61bcf6e3041d26 506 SMART SM00382 288 483 0.89 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_04295 31def2a069af9ed970d4f9644f5834e5 471 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 9 20 - T 17-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_04295 31def2a069af9ed970d4f9644f5834e5 471 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 2 459 4.2E-197 T 17-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 VI35_04295 31def2a069af9ed970d4f9644f5834e5 471 SUPERFAMILY SSF48163 299 461 3.4E-46 T 17-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 VI35_04295 31def2a069af9ed970d4f9644f5834e5 471 Gene3D G3DSA:1.10.10.350 367 470 5.0E-24 T 17-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 VI35_04295 31def2a069af9ed970d4f9644f5834e5 471 SUPERFAMILY SSF52374 2 298 2.06E-113 T 17-10-2018 VI35_04295 31def2a069af9ed970d4f9644f5834e5 471 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 2 305 3.0E-118 T 17-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 VI35_04295 31def2a069af9ed970d4f9644f5834e5 471 Gene3D G3DSA:3.40.50.620 1 314 3.7E-137 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_04295 31def2a069af9ed970d4f9644f5834e5 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 31 2.2E-27 T 17-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VI35_04295 31def2a069af9ed970d4f9644f5834e5 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 179 189 2.2E-27 T 17-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VI35_04295 31def2a069af9ed970d4f9644f5834e5 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 2.2E-27 T 17-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VI35_04295 31def2a069af9ed970d4f9644f5834e5 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 195 203 2.2E-27 T 17-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VI35_04295 31def2a069af9ed970d4f9644f5834e5 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 2.2E-27 T 17-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VI35_04295 31def2a069af9ed970d4f9644f5834e5 471 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 2 461 33.103 T 17-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 VI35_06010 6d9e52fcf459ef420ef69646e8b976b6 162 Pfam PF01584 CheW-like domain 18 154 4.0E-40 T 17-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VI35_06010 6d9e52fcf459ef420ef69646e8b976b6 162 Gene3D G3DSA:2.40.50.180 37 146 2.7E-43 T 17-10-2018 VI35_06010 6d9e52fcf459ef420ef69646e8b976b6 162 Gene3D G3DSA:2.30.30.40 20 145 2.7E-43 T 17-10-2018 VI35_06010 6d9e52fcf459ef420ef69646e8b976b6 162 SMART SM00260 14 151 4.0E-49 T 17-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VI35_06010 6d9e52fcf459ef420ef69646e8b976b6 162 SUPERFAMILY SSF50341 14 157 5.75E-42 T 17-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 VI35_04845 babfb1733fa89551ac4e83e1a00f4849 650 SUPERFAMILY SSF52540 147 394 9.15E-72 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_04845 babfb1733fa89551ac4e83e1a00f4849 650 SUPERFAMILY SSF140990 405 606 4.05E-76 T 17-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 VI35_04845 babfb1733fa89551ac4e83e1a00f4849 650 Gene3D G3DSA:1.10.8.60 325 399 3.6E-28 T 17-10-2018 VI35_04845 babfb1733fa89551ac4e83e1a00f4849 650 Gene3D G3DSA:2.40.50.920 26 103 1.9E-23 T 17-10-2018 VI35_04845 babfb1733fa89551ac4e83e1a00f4849 650 SMART SM00382 187 326 8.6E-27 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_04845 babfb1733fa89551ac4e83e1a00f4849 650 ProSitePatterns PS00674 AAA-protein family signature. 294 312 - T 17-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 VI35_04845 babfb1733fa89551ac4e83e1a00f4849 650 Pfam PF01434 Peptidase family M41 385 594 3.2E-83 T 17-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 VI35_04845 babfb1733fa89551ac4e83e1a00f4849 650 Gene3D G3DSA:3.40.50.300 144 323 5.8E-71 T 17-10-2018 VI35_04845 babfb1733fa89551ac4e83e1a00f4849 650 Pfam PF06480 FtsH Extracellular 8 92 3.5E-11 T 17-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 VI35_04845 babfb1733fa89551ac4e83e1a00f4849 650 Gene3D G3DSA:1.20.58.760 400 605 3.6E-73 T 17-10-2018 VI35_04845 babfb1733fa89551ac4e83e1a00f4849 650 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 191 323 2.4E-46 T 17-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VI35_04845 babfb1733fa89551ac4e83e1a00f4849 650 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 6 635 37.592 T 17-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 VI35_04845 babfb1733fa89551ac4e83e1a00f4849 650 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 103 596 2.0E-245 T 17-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 VI35_16240 043aeba0ac2c007781ba27871c3f8023 357 SMART SM01005 233 357 4.4E-66 T 17-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VI35_16240 043aeba0ac2c007781ba27871c3f8023 357 PRINTS PR00992 Alanine racemase signature 120 132 3.1E-71 T 17-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VI35_16240 043aeba0ac2c007781ba27871c3f8023 357 PRINTS PR00992 Alanine racemase signature 249 264 3.1E-71 T 17-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VI35_16240 043aeba0ac2c007781ba27871c3f8023 357 PRINTS PR00992 Alanine racemase signature 60 78 3.1E-71 T 17-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VI35_16240 043aeba0ac2c007781ba27871c3f8023 357 PRINTS PR00992 Alanine racemase signature 26 42 3.1E-71 T 17-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VI35_16240 043aeba0ac2c007781ba27871c3f8023 357 PRINTS PR00992 Alanine racemase signature 192 219 3.1E-71 T 17-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VI35_16240 043aeba0ac2c007781ba27871c3f8023 357 PRINTS PR00992 Alanine racemase signature 266 281 3.1E-71 T 17-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VI35_16240 043aeba0ac2c007781ba27871c3f8023 357 PRINTS PR00992 Alanine racemase signature 339 352 3.1E-71 T 17-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VI35_16240 043aeba0ac2c007781ba27871c3f8023 357 PRINTS PR00992 Alanine racemase signature 287 304 3.1E-71 T 17-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VI35_16240 043aeba0ac2c007781ba27871c3f8023 357 PRINTS PR00992 Alanine racemase signature 155 166 3.1E-71 T 17-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VI35_16240 043aeba0ac2c007781ba27871c3f8023 357 Pfam PF00842 Alanine racemase, C-terminal domain 233 354 2.9E-41 T 17-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VI35_16240 043aeba0ac2c007781ba27871c3f8023 357 Hamap MF_01201 Alanine racemase. 1 357 35.521 T 17-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VI35_16240 043aeba0ac2c007781ba27871c3f8023 357 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 31 41 - T 17-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VI35_16240 043aeba0ac2c007781ba27871c3f8023 357 Gene3D G3DSA:3.20.20.10 10 217 8.7E-133 T 17-10-2018 IPR029066 PLP-binding barrel VI35_16240 043aeba0ac2c007781ba27871c3f8023 357 Pfam PF01168 Alanine racemase, N-terminal domain 8 219 3.4E-67 T 17-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VI35_16240 043aeba0ac2c007781ba27871c3f8023 357 SUPERFAMILY SSF51419 8 234 8.64E-70 T 17-10-2018 IPR029066 PLP-binding barrel VI35_16240 043aeba0ac2c007781ba27871c3f8023 357 Gene3D G3DSA:2.40.37.10 8 352 8.7E-133 T 17-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 VI35_16240 043aeba0ac2c007781ba27871c3f8023 357 SUPERFAMILY SSF50621 226 357 6.98E-47 T 17-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 VI35_16240 043aeba0ac2c007781ba27871c3f8023 357 TIGRFAM TIGR00492 alr: alanine racemase 3 357 2.8E-126 T 17-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VI35_19290 5d13f35dc0ceb0f7a6d8fe7f94b4a12a 1231 Gene3D G3DSA:3.20.20.330 9 346 1.1E-123 T 17-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 VI35_19290 5d13f35dc0ceb0f7a6d8fe7f94b4a12a 1231 SUPERFAMILY SSF52242 749 901 3.66E-44 T 17-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 VI35_19290 5d13f35dc0ceb0f7a6d8fe7f94b4a12a 1231 PIRSF PIRSF000381 9 1203 0.0 T 17-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VI35_19290 5d13f35dc0ceb0f7a6d8fe7f94b4a12a 1231 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 946 1216 2.1E-125 T 17-10-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VI35_19290 5d13f35dc0ceb0f7a6d8fe7f94b4a12a 1231 SUPERFAMILY SSF47644 659 746 1.96E-29 T 17-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VI35_19290 5d13f35dc0ceb0f7a6d8fe7f94b4a12a 1231 Gene3D G3DSA:3.40.50.280 751 902 2.8E-56 T 17-10-2018 VI35_19290 5d13f35dc0ceb0f7a6d8fe7f94b4a12a 1231 Gene3D G3DSA:1.10.1240.10 656 744 5.3E-41 T 17-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VI35_19290 5d13f35dc0ceb0f7a6d8fe7f94b4a12a 1231 TIGRFAM TIGR02082 metH: methionine synthase 20 1200 0.0 T 17-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VI35_19290 5d13f35dc0ceb0f7a6d8fe7f94b4a12a 1231 Gene3D G3DSA:3.10.196.10 915 1230 8.3E-145 T 17-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VI35_19290 5d13f35dc0ceb0f7a6d8fe7f94b4a12a 1231 SUPERFAMILY SSF51717 364 637 1.7E-88 T 17-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VI35_19290 5d13f35dc0ceb0f7a6d8fe7f94b4a12a 1231 Pfam PF02310 B12 binding domain 755 848 1.2E-18 T 17-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 VI35_19290 5d13f35dc0ceb0f7a6d8fe7f94b4a12a 1231 Pfam PF00809 Pterin binding enzyme 368 606 1.1E-60 T 17-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VI35_19290 5d13f35dc0ceb0f7a6d8fe7f94b4a12a 1231 Gene3D G3DSA:3.20.20.20 348 650 2.3E-130 T 17-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VI35_19290 5d13f35dc0ceb0f7a6d8fe7f94b4a12a 1231 SUPERFAMILY SSF82282 14 407 2.09E-117 T 17-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 VI35_19290 5d13f35dc0ceb0f7a6d8fe7f94b4a12a 1231 Pfam PF02574 Homocysteine S-methyltransferase 25 333 2.8E-78 T 17-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 VI35_19290 5d13f35dc0ceb0f7a6d8fe7f94b4a12a 1231 Pfam PF02607 B12 binding domain 668 739 5.2E-26 T 17-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VI35_19290 5d13f35dc0ceb0f7a6d8fe7f94b4a12a 1231 SUPERFAMILY SSF56507 909 1230 1.44E-128 T 17-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VI35_19290 5d13f35dc0ceb0f7a6d8fe7f94b4a12a 1231 Gene3D G3DSA:1.10.288.10 944 1100 8.3E-145 T 17-10-2018 VI35_19290 5d13f35dc0ceb0f7a6d8fe7f94b4a12a 1231 SMART SM01018 664 747 3.3E-46 T 17-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VI35_15780 1fcdec650f176da46c7e7d846af0793b 315 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 193 314 2.7E-35 T 17-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain VI35_15780 1fcdec650f176da46c7e7d846af0793b 315 Gene3D G3DSA:1.10.1040.10 192 315 2.3E-41 T 17-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 VI35_15780 1fcdec650f176da46c7e7d846af0793b 315 SUPERFAMILY SSF51735 20 190 1.48E-41 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_15780 1fcdec650f176da46c7e7d846af0793b 315 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 22 314 2.6E-71 T 17-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 VI35_15780 1fcdec650f176da46c7e7d846af0793b 315 Gene3D G3DSA:3.40.50.720 20 191 1.8E-38 T 17-10-2018 VI35_15780 1fcdec650f176da46c7e7d846af0793b 315 Pfam PF02558 Ketopantoate reductase PanE/ApbA 22 167 1.6E-28 T 17-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain VI35_15780 1fcdec650f176da46c7e7d846af0793b 315 SUPERFAMILY SSF48179 193 313 2.11E-35 T 17-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VI35_06505 10ccdd5a0e400f29cb86e729c7dad796 588 PRINTS PR01042 Aspartyl-tRNA synthetase signature 207 220 1.2E-26 T 17-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_06505 10ccdd5a0e400f29cb86e729c7dad796 588 PRINTS PR01042 Aspartyl-tRNA synthetase signature 473 489 1.2E-26 T 17-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_06505 10ccdd5a0e400f29cb86e729c7dad796 588 PRINTS PR01042 Aspartyl-tRNA synthetase signature 517 531 1.2E-26 T 17-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_06505 10ccdd5a0e400f29cb86e729c7dad796 588 PRINTS PR01042 Aspartyl-tRNA synthetase signature 190 202 1.2E-26 T 17-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_06505 10ccdd5a0e400f29cb86e729c7dad796 588 SUPERFAMILY SSF55681 108 580 5.94E-105 T 17-10-2018 VI35_06505 10ccdd5a0e400f29cb86e729c7dad796 588 Gene3D G3DSA:3.30.1360.30 271 420 9.4E-193 T 17-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 VI35_06505 10ccdd5a0e400f29cb86e729c7dad796 588 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 1 583 33.064 T 17-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 VI35_06505 10ccdd5a0e400f29cb86e729c7dad796 588 SUPERFAMILY SSF50249 1 105 2.86E-34 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_06505 10ccdd5a0e400f29cb86e729c7dad796 588 Pfam PF01336 OB-fold nucleic acid binding domain 19 102 4.7E-16 T 17-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 VI35_06505 10ccdd5a0e400f29cb86e729c7dad796 588 Pfam PF02938 GAD domain 307 406 6.7E-32 T 17-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 VI35_06505 10ccdd5a0e400f29cb86e729c7dad796 588 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 584 3.1E-260 T 17-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 VI35_06505 10ccdd5a0e400f29cb86e729c7dad796 588 Gene3D G3DSA:3.30.930.10 117 580 9.4E-193 T 17-10-2018 VI35_06505 10ccdd5a0e400f29cb86e729c7dad796 588 Pfam PF00152 tRNA synthetases class II (D, K and N) 117 557 5.1E-104 T 17-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_06505 10ccdd5a0e400f29cb86e729c7dad796 588 SUPERFAMILY SSF55261 289 420 2.16E-46 T 17-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 VI35_06505 10ccdd5a0e400f29cb86e729c7dad796 588 Gene3D G3DSA:2.40.50.140 1 106 6.7E-35 T 17-10-2018 VI35_04625 66e920e65edf2a0a02804666e47bbb2c 267 Pfam PF11207 Protein of unknown function (DUF2989) 19 217 8.4E-67 T 17-10-2018 IPR021372 Protein of unknown function DUF2989 VI35_08970 5fe842316c125a0c1490934930428e47 68 Pfam PF10746 Phage holin T7 family, holin superfamily II 12 61 2.7E-12 T 17-10-2018 IPR019682 Bacteriophage T7, Gp17.5, holin GO:0019076|GO:0019835 VI35_18130 6a2da522e4d706a4ea283c5c2eff6e42 233 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 80 94 - T 17-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 VI35_18130 6a2da522e4d706a4ea283c5c2eff6e42 233 SUPERFAMILY SSF51419 1 228 1.27E-76 T 17-10-2018 IPR029066 PLP-binding barrel VI35_18130 6a2da522e4d706a4ea283c5c2eff6e42 233 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 6 229 32.017 T 17-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 VI35_18130 6a2da522e4d706a4ea283c5c2eff6e42 233 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 1 230 4.2E-76 T 17-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 VI35_18130 6a2da522e4d706a4ea283c5c2eff6e42 233 Gene3D G3DSA:3.20.20.10 1 233 9.5E-83 T 17-10-2018 IPR029066 PLP-binding barrel VI35_18130 6a2da522e4d706a4ea283c5c2eff6e42 233 Pfam PF01168 Alanine racemase, N-terminal domain 13 230 8.1E-31 T 17-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VI35_18130 6a2da522e4d706a4ea283c5c2eff6e42 233 PIRSF PIRSF004848 1 233 5.8E-74 T 17-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 VI35_20155 b64b13b7536862c52f02e0e182cd29e9 458 Gene3D G3DSA:3.30.70.1450 367 458 3.3E-28 T 17-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VI35_20155 b64b13b7536862c52f02e0e182cd29e9 458 SUPERFAMILY SSF51735 232 376 1.86E-33 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_20155 b64b13b7536862c52f02e0e182cd29e9 458 Pfam PF02254 TrkA-N domain 235 350 2.0E-26 T 17-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 VI35_20155 b64b13b7536862c52f02e0e182cd29e9 458 Pfam PF02254 TrkA-N domain 3 105 9.9E-29 T 17-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 VI35_20155 b64b13b7536862c52f02e0e182cd29e9 458 SUPERFAMILY SSF51735 1 152 6.2E-36 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_20155 b64b13b7536862c52f02e0e182cd29e9 458 SUPERFAMILY SSF116726 136 223 3.92E-9 T 17-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VI35_20155 b64b13b7536862c52f02e0e182cd29e9 458 Gene3D G3DSA:3.40.50.720 2 139 1.3E-49 T 17-10-2018 VI35_20155 b64b13b7536862c52f02e0e182cd29e9 458 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 3.1E-34 T 17-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 VI35_20155 b64b13b7536862c52f02e0e182cd29e9 458 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 3.1E-34 T 17-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 VI35_20155 b64b13b7536862c52f02e0e182cd29e9 458 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 3.1E-34 T 17-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 VI35_20155 b64b13b7536862c52f02e0e182cd29e9 458 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 3.1E-34 T 17-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 VI35_20155 b64b13b7536862c52f02e0e182cd29e9 458 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 3.1E-34 T 17-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 VI35_20155 b64b13b7536862c52f02e0e182cd29e9 458 Gene3D G3DSA:3.30.70.1450 140 232 1.0E-20 T 17-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VI35_20155 b64b13b7536862c52f02e0e182cd29e9 458 Gene3D G3DSA:3.40.50.720 233 366 1.1E-37 T 17-10-2018 VI35_20155 b64b13b7536862c52f02e0e182cd29e9 458 SUPERFAMILY SSF116726 390 451 1.26E-8 T 17-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VI35_20155 b64b13b7536862c52f02e0e182cd29e9 458 Pfam PF02080 TrkA-C domain 391 451 9.1E-10 T 17-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 VI35_20155 b64b13b7536862c52f02e0e182cd29e9 458 Pfam PF02080 TrkA-C domain 156 225 5.5E-10 T 17-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 VI35_01320 4756b38b165e8af5966e6e105331729d 1434 Gene3D G3DSA:2.40.50.100 1050 1153 1.2E-28 T 17-10-2018 VI35_01320 4756b38b165e8af5966e6e105331729d 1434 Gene3D G3DSA:1.10.40.90 374 416 6.2E-22 T 17-10-2018 VI35_01320 4756b38b165e8af5966e6e105331729d 1434 Gene3D G3DSA:2.40.50.100 1178 1242 3.1E-63 T 17-10-2018 VI35_01320 4756b38b165e8af5966e6e105331729d 1434 Pfam PF05000 RNA polymerase Rpb1, domain 4 700 778 2.1E-18 T 17-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_01320 4756b38b165e8af5966e6e105331729d 1434 Gene3D G3DSA:1.10.1790.20 1162 1341 3.1E-63 T 17-10-2018 VI35_01320 4756b38b165e8af5966e6e105331729d 1434 SMART SM00663 235 514 7.9E-183 T 17-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_01320 4756b38b165e8af5966e6e105331729d 1434 Gene3D G3DSA:1.10.132.30 667 816 2.3E-65 T 17-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_01320 4756b38b165e8af5966e6e105331729d 1434 Pfam PF04997 RNA polymerase Rpb1, domain 1 15 342 1.7E-88 T 17-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_01320 4756b38b165e8af5966e6e105331729d 1434 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 10 1401 18.885 T 17-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_01320 4756b38b165e8af5966e6e105331729d 1434 Pfam PF04998 RNA polymerase Rpb1, domain 5 792 1343 1.7E-77 T 17-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_01320 4756b38b165e8af5966e6e105331729d 1434 Gene3D G3DSA:2.40.50.100 975 1049 3.3E-26 T 17-10-2018 VI35_01320 4756b38b165e8af5966e6e105331729d 1434 Gene3D G3DSA:1.10.274.100 490 666 9.2E-37 T 17-10-2018 VI35_01320 4756b38b165e8af5966e6e105331729d 1434 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 19 1057 0.0 T 17-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_01320 4756b38b165e8af5966e6e105331729d 1434 Pfam PF04983 RNA polymerase Rpb1, domain 3 489 670 6.4E-28 T 17-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_01320 4756b38b165e8af5966e6e105331729d 1434 Gene3D G3DSA:1.10.150.390 1343 1404 4.2E-28 T 17-10-2018 VI35_01320 4756b38b165e8af5966e6e105331729d 1434 SUPERFAMILY SSF64484 16 1391 0.0 T 17-10-2018 VI35_01320 4756b38b165e8af5966e6e105331729d 1434 Pfam PF00623 RNA polymerase Rpb1, domain 2 344 392 1.1E-7 T 17-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_01320 4756b38b165e8af5966e6e105331729d 1434 Pfam PF00623 RNA polymerase Rpb1, domain 2 389 485 2.7E-27 T 17-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_07695 434875c2a81d0e9ac2bfb36210d9f193 419 Pfam PF00375 Sodium:dicarboxylate symporter family 6 400 3.3E-112 T 17-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 VI35_07695 434875c2a81d0e9ac2bfb36210d9f193 419 PRINTS PR00173 Glutamate-aspartate symporter signature 49 69 1.1E-38 T 17-10-2018 VI35_07695 434875c2a81d0e9ac2bfb36210d9f193 419 PRINTS PR00173 Glutamate-aspartate symporter signature 293 319 1.1E-38 T 17-10-2018 VI35_07695 434875c2a81d0e9ac2bfb36210d9f193 419 PRINTS PR00173 Glutamate-aspartate symporter signature 79 104 1.1E-38 T 17-10-2018 VI35_07695 434875c2a81d0e9ac2bfb36210d9f193 419 PRINTS PR00173 Glutamate-aspartate symporter signature 355 375 1.1E-38 T 17-10-2018 VI35_07695 434875c2a81d0e9ac2bfb36210d9f193 419 PRINTS PR00173 Glutamate-aspartate symporter signature 328 347 1.1E-38 T 17-10-2018 VI35_07695 434875c2a81d0e9ac2bfb36210d9f193 419 PRINTS PR00173 Glutamate-aspartate symporter signature 193 212 1.1E-38 T 17-10-2018 VI35_07695 434875c2a81d0e9ac2bfb36210d9f193 419 PRINTS PR00173 Glutamate-aspartate symporter signature 146 168 1.1E-38 T 17-10-2018 VI35_07695 434875c2a81d0e9ac2bfb36210d9f193 419 PRINTS PR00173 Glutamate-aspartate symporter signature 4 24 1.1E-38 T 17-10-2018 VI35_07695 434875c2a81d0e9ac2bfb36210d9f193 419 Gene3D G3DSA:1.10.3860.10 1 413 1.3E-118 T 17-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 VI35_07695 434875c2a81d0e9ac2bfb36210d9f193 419 SUPERFAMILY SSF118215 6 402 4.32E-114 T 17-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 VI35_01310 3aaada331250653dcac2b98ad590704c 121 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 121 6.7E-47 T 17-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_01310 3aaada331250653dcac2b98ad590704c 121 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 4 48 2.6E-15 T 17-10-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_01310 3aaada331250653dcac2b98ad590704c 121 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 56 121 1.0E-17 T 17-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_01310 3aaada331250653dcac2b98ad590704c 121 Gene3D G3DSA:1.20.5.710 2 50 4.3E-24 T 17-10-2018 VI35_01310 3aaada331250653dcac2b98ad590704c 121 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 121 25.552 T 17-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_01310 3aaada331250653dcac2b98ad590704c 121 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 55 121 2.0E-30 T 17-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_01310 3aaada331250653dcac2b98ad590704c 121 SUPERFAMILY SSF48300 3 57 1.02E-16 T 17-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_01310 3aaada331250653dcac2b98ad590704c 121 SUPERFAMILY SSF54736 50 121 1.92E-24 T 17-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like VI35_01310 3aaada331250653dcac2b98ad590704c 121 Gene3D G3DSA:3.30.1390.10 51 121 2.0E-31 T 17-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like VI35_15105 ef5a1fc1c7c669467eeec243374641fa 322 TIGRFAM TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog 3 312 3.9E-73 T 17-10-2018 IPR004481 Sodium/potassium/calcium exchanger Reactome: R-HSA-425561 VI35_15105 ef5a1fc1c7c669467eeec243374641fa 322 Gene3D G3DSA:1.20.58.1130 9 205 5.7E-88 T 17-10-2018 VI35_15105 ef5a1fc1c7c669467eeec243374641fa 322 Gene3D G3DSA:1.20.1420.30 35 310 5.7E-88 T 17-10-2018 VI35_15105 ef5a1fc1c7c669467eeec243374641fa 322 Pfam PF01699 Sodium/calcium exchanger protein 4 144 4.1E-23 T 17-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 VI35_15105 ef5a1fc1c7c669467eeec243374641fa 322 Pfam PF01699 Sodium/calcium exchanger protein 173 316 1.4E-31 T 17-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 VI35_10430 0479b53a6ee83b89d90fe8a1e7b5a690 436 Hamap MF_01618 3-ketoacyl-CoA thiolase [fadI]. 2 436 69.641 T 17-10-2018 IPR012806 Acetyl-CoA C-acyltransferase FadI GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 VI35_10430 0479b53a6ee83b89d90fe8a1e7b5a690 436 PIRSF PIRSF000429 9 436 1.2E-117 T 17-10-2018 IPR002155 Thiolase GO:0016747 VI35_10430 0479b53a6ee83b89d90fe8a1e7b5a690 436 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 95 113 - T 17-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 VI35_10430 0479b53a6ee83b89d90fe8a1e7b5a690 436 Pfam PF00108 Thiolase, N-terminal domain 15 287 3.1E-60 T 17-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 VI35_10430 0479b53a6ee83b89d90fe8a1e7b5a690 436 SUPERFAMILY SSF53901 15 295 2.5E-60 T 17-10-2018 IPR016039 Thiolase-like GO:0003824 VI35_10430 0479b53a6ee83b89d90fe8a1e7b5a690 436 Gene3D G3DSA:3.40.47.10 6 435 8.4E-113 T 17-10-2018 IPR016039 Thiolase-like GO:0003824 VI35_10430 0479b53a6ee83b89d90fe8a1e7b5a690 436 ProSitePatterns PS00737 Thiolases signature 2. 382 398 - T 17-10-2018 IPR020613 Thiolase, conserved site GO:0016747 VI35_10430 0479b53a6ee83b89d90fe8a1e7b5a690 436 TIGRFAM TIGR02446 FadI: acetyl-CoA C-acyltransferase FadI 7 436 7.2E-255 T 17-10-2018 IPR012806 Acetyl-CoA C-acyltransferase FadI GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 VI35_10430 0479b53a6ee83b89d90fe8a1e7b5a690 436 SUPERFAMILY SSF53901 296 435 3.74E-33 T 17-10-2018 IPR016039 Thiolase-like GO:0003824 VI35_10430 0479b53a6ee83b89d90fe8a1e7b5a690 436 Pfam PF02803 Thiolase, C-terminal domain 296 434 2.3E-36 T 17-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 VI35_10430 0479b53a6ee83b89d90fe8a1e7b5a690 436 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 17 434 1.3E-129 T 17-10-2018 IPR002155 Thiolase GO:0016747 VI35_17540 74fb444f82bfc883d51bc93bfd12cb52 282 Gene3D G3DSA:3.30.70.20 42 84 2.6E-9 T 17-10-2018 VI35_17540 74fb444f82bfc883d51bc93bfd12cb52 282 Pfam PF13353 4Fe-4S single cluster domain 10 132 9.8E-11 T 17-10-2018 VI35_17540 74fb444f82bfc883d51bc93bfd12cb52 282 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 69 80 - T 17-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VI35_17540 74fb444f82bfc883d51bc93bfd12cb52 282 SUPERFAMILY SSF102114 78 238 9.68E-10 T 17-10-2018 VI35_17540 74fb444f82bfc883d51bc93bfd12cb52 282 SUPERFAMILY SSF54862 20 83 6.58E-14 T 17-10-2018 VI35_17540 74fb444f82bfc883d51bc93bfd12cb52 282 TIGRFAM TIGR04041 activase_YjjW: glycine radical enzyme activase, YjjW family 1 279 1.1E-100 T 17-10-2018 IPR023912 Putative glycyl-radical enzyme activating enzyme YjjW VI35_17540 74fb444f82bfc883d51bc93bfd12cb52 282 Gene3D G3DSA:3.80.30.10 107 247 6.9E-20 T 17-10-2018 VI35_17540 74fb444f82bfc883d51bc93bfd12cb52 282 Gene3D G3DSA:3.20.20.70 1 41 1.2E-11 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_17540 74fb444f82bfc883d51bc93bfd12cb52 282 ProSitePatterns PS01087 Radical activating enzymes signature. 12 33 - T 17-10-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 VI35_17540 74fb444f82bfc883d51bc93bfd12cb52 282 PIRSF PIRSF000371 1 281 3.3E-70 T 17-10-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 VI35_17540 74fb444f82bfc883d51bc93bfd12cb52 282 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 17-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VI35_17540 74fb444f82bfc883d51bc93bfd12cb52 282 Pfam PF04055 Radical SAM superfamily 19 213 3.2E-19 T 17-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VI35_07240 dcc577f8103120b7d4949c62a61a5294 268 Pfam PF00561 alpha/beta hydrolase fold 21 120 7.6E-16 T 17-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VI35_07240 dcc577f8103120b7d4949c62a61a5294 268 PRINTS PR00412 Epoxide hydrolase signature 46 61 9.6E-8 T 17-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 VI35_07240 dcc577f8103120b7d4949c62a61a5294 268 PRINTS PR00412 Epoxide hydrolase signature 105 118 9.6E-8 T 17-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 VI35_07240 dcc577f8103120b7d4949c62a61a5294 268 PRINTS PR00412 Epoxide hydrolase signature 240 262 9.6E-8 T 17-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 VI35_07240 dcc577f8103120b7d4949c62a61a5294 268 Gene3D G3DSA:3.40.50.1820 1 266 3.8E-52 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_07240 dcc577f8103120b7d4949c62a61a5294 268 SUPERFAMILY SSF53474 3 263 2.7E-57 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_07240 dcc577f8103120b7d4949c62a61a5294 268 PRINTS PR00111 Alpha/beta hydrolase fold signature 46 61 3.6E-8 T 17-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VI35_07240 dcc577f8103120b7d4949c62a61a5294 268 PRINTS PR00111 Alpha/beta hydrolase fold signature 91 104 3.6E-8 T 17-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VI35_07240 dcc577f8103120b7d4949c62a61a5294 268 PRINTS PR00111 Alpha/beta hydrolase fold signature 210 224 3.6E-8 T 17-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VI35_07240 dcc577f8103120b7d4949c62a61a5294 268 PRINTS PR00111 Alpha/beta hydrolase fold signature 105 118 3.6E-8 T 17-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VI35_05745 e60c62c30292b4f5549e3aeafe6ab146 418 SUPERFAMILY SSF52540 1 417 2.97E-116 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_05745 e60c62c30292b4f5549e3aeafe6ab146 418 Gene3D G3DSA:3.90.170.10 266 418 1.5E-48 T 17-10-2018 VI35_05745 e60c62c30292b4f5549e3aeafe6ab146 418 Gene3D G3DSA:1.10.300.10 99 200 3.2E-70 T 17-10-2018 VI35_05745 e60c62c30292b4f5549e3aeafe6ab146 418 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 418 136.612 T 17-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 VI35_05745 e60c62c30292b4f5549e3aeafe6ab146 418 Pfam PF00709 Adenylosuccinate synthetase 4 416 3.7E-126 T 17-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 VI35_05745 e60c62c30292b4f5549e3aeafe6ab146 418 SMART SM00788 3 417 1.1E-168 T 17-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 VI35_05745 e60c62c30292b4f5549e3aeafe6ab146 418 Gene3D G3DSA:3.40.440.10 6 253 3.2E-70 T 17-10-2018 VI35_01060 5b99f50b2a0792892a765bc73ced6d12 629 Gene3D G3DSA:3.30.450.20 52 271 1.5E-54 T 17-10-2018 VI35_01060 5b99f50b2a0792892a765bc73ced6d12 629 SUPERFAMILY SSF103190 80 178 1.33E-11 T 17-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VI35_01060 5b99f50b2a0792892a765bc73ced6d12 629 SMART SM00304 298 352 5.2E-10 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_01060 5b99f50b2a0792892a765bc73ced6d12 629 Gene3D G3DSA:1.10.287.950 299 629 2.3E-71 T 17-10-2018 VI35_01060 5b99f50b2a0792892a765bc73ced6d12 629 Pfam PF00672 HAMP domain 304 348 6.1E-9 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_01060 5b99f50b2a0792892a765bc73ced6d12 629 SMART SM00283 367 628 2.9E-68 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_01060 5b99f50b2a0792892a765bc73ced6d12 629 Pfam PF02743 Cache domain 42 260 1.7E-27 T 17-10-2018 IPR033479 Double Cache domain 1 VI35_01060 5b99f50b2a0792892a765bc73ced6d12 629 SUPERFAMILY SSF58104 320 629 3.14E-75 T 17-10-2018 VI35_01060 5b99f50b2a0792892a765bc73ced6d12 629 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 439 595 4.7E-41 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_01060 5b99f50b2a0792892a765bc73ced6d12 629 Gene3D G3DSA:3.30.450.20 64 171 1.5E-54 T 17-10-2018 VI35_18705 5887da668a13ef05bdd407758ea38c8d 134 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 38 114 7.7E-8 T 17-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 VI35_18705 5887da668a13ef05bdd407758ea38c8d 134 Gene3D G3DSA:2.170.150.70 14 131 5.1E-37 T 17-10-2018 VI35_18705 5887da668a13ef05bdd407758ea38c8d 134 SUPERFAMILY SSF51316 8 131 1.05E-30 T 17-10-2018 IPR011057 Mss4-like superfamily VI35_09930 c5bcfd746acdd1cc126878a74953bf63 636 SUPERFAMILY SSF109998 43 240 1.37E-35 T 17-10-2018 IPR027304 Trigger factor/SurA domain superfamily VI35_09930 c5bcfd746acdd1cc126878a74953bf63 636 Gene3D G3DSA:1.10.4030.30 244 380 7.4E-36 T 17-10-2018 VI35_09930 c5bcfd746acdd1cc126878a74953bf63 636 Pfam PF13616 PPIC-type PPIASE domain 267 365 1.5E-27 T 17-10-2018 VI35_09930 c5bcfd746acdd1cc126878a74953bf63 636 SUPERFAMILY SSF54534 261 365 2.42E-28 T 17-10-2018 VI35_09930 c5bcfd746acdd1cc126878a74953bf63 636 Pfam PF13624 SurA N-terminal domain 1 166 3.2E-50 T 17-10-2018 VI35_09930 c5bcfd746acdd1cc126878a74953bf63 636 Gene3D G3DSA:3.10.50.40 269 368 7.4E-36 T 17-10-2018 VI35_09930 c5bcfd746acdd1cc126878a74953bf63 636 Gene3D G3DSA:1.10.4030.30 41 194 2.7E-17 T 17-10-2018 VI35_09145 290d1df09a903b7570fbcf3e9ec43a3c 1055 Gene3D G3DSA:1.20.1640.10 10 521 0.0 T 17-10-2018 VI35_09145 290d1df09a903b7570fbcf3e9ec43a3c 1055 Gene3D G3DSA:1.20.1640.10 522 1031 0.0 T 17-10-2018 VI35_09145 290d1df09a903b7570fbcf3e9ec43a3c 1055 SUPERFAMILY SSF82714 729 816 3.4E-18 T 17-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VI35_09145 290d1df09a903b7570fbcf3e9ec43a3c 1055 SUPERFAMILY SSF82866 298 498 1.31E-50 T 17-10-2018 VI35_09145 290d1df09a903b7570fbcf3e9ec43a3c 1055 Gene3D G3DSA:3.30.70.1430 40 824 0.0 T 17-10-2018 VI35_09145 290d1df09a903b7570fbcf3e9ec43a3c 1055 Gene3D G3DSA:3.30.70.1440 676 874 0.0 T 17-10-2018 VI35_09145 290d1df09a903b7570fbcf3e9ec43a3c 1055 SUPERFAMILY SSF82693 41 134 2.14E-26 T 17-10-2018 VI35_09145 290d1df09a903b7570fbcf3e9ec43a3c 1055 SUPERFAMILY SSF82866 812 1036 8.63E-43 T 17-10-2018 VI35_09145 290d1df09a903b7570fbcf3e9ec43a3c 1055 Pfam PF00873 AcrB/AcrD/AcrF family 3 1034 0.0 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_09145 290d1df09a903b7570fbcf3e9ec43a3c 1055 Gene3D G3DSA:3.30.70.1430 576 675 0.0 T 17-10-2018 VI35_09145 290d1df09a903b7570fbcf3e9ec43a3c 1055 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 2.0E-91 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_09145 290d1df09a903b7570fbcf3e9ec43a3c 1055 PRINTS PR00702 Acriflavin resistance protein family signature 365 386 2.0E-91 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_09145 290d1df09a903b7570fbcf3e9ec43a3c 1055 PRINTS PR00702 Acriflavin resistance protein family signature 393 417 2.0E-91 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_09145 290d1df09a903b7570fbcf3e9ec43a3c 1055 PRINTS PR00702 Acriflavin resistance protein family signature 561 578 2.0E-91 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_09145 290d1df09a903b7570fbcf3e9ec43a3c 1055 PRINTS PR00702 Acriflavin resistance protein family signature 338 361 2.0E-91 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_09145 290d1df09a903b7570fbcf3e9ec43a3c 1055 PRINTS PR00702 Acriflavin resistance protein family signature 446 469 2.0E-91 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_09145 290d1df09a903b7570fbcf3e9ec43a3c 1055 PRINTS PR00702 Acriflavin resistance protein family signature 630 644 2.0E-91 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_09145 290d1df09a903b7570fbcf3e9ec43a3c 1055 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 2.0E-91 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_09145 290d1df09a903b7570fbcf3e9ec43a3c 1055 PRINTS PR00702 Acriflavin resistance protein family signature 471 494 2.0E-91 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_09145 290d1df09a903b7570fbcf3e9ec43a3c 1055 Gene3D G3DSA:3.30.2090.10 181 277 0.0 T 17-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VI35_09145 290d1df09a903b7570fbcf3e9ec43a3c 1055 SUPERFAMILY SSF82693 138 332 2.96E-28 T 17-10-2018 VI35_09145 290d1df09a903b7570fbcf3e9ec43a3c 1055 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 3 1039 0.0 T 17-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 VI35_09145 290d1df09a903b7570fbcf3e9ec43a3c 1055 SUPERFAMILY SSF82693 574 678 3.45E-22 T 17-10-2018 VI35_09145 290d1df09a903b7570fbcf3e9ec43a3c 1055 Gene3D G3DSA:3.30.2090.10 728 816 0.0 T 17-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VI35_09145 290d1df09a903b7570fbcf3e9ec43a3c 1055 Gene3D G3DSA:3.30.70.1320 135 334 0.0 T 17-10-2018 VI35_09145 290d1df09a903b7570fbcf3e9ec43a3c 1055 SUPERFAMILY SSF82714 185 274 3.66E-20 T 17-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VI35_10905 5ccfdec40c8da9ba9e43bf3ce2d71176 636 Pfam PF12848 ABC transporter 224 299 1.0E-9 T 17-10-2018 IPR032781 ABC-transporter extension domain VI35_10905 5ccfdec40c8da9ba9e43bf3ce2d71176 636 SUPERFAMILY SSF52540 314 517 1.6E-42 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_10905 5ccfdec40c8da9ba9e43bf3ce2d71176 636 SMART SM00382 344 515 6.2E-13 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_10905 5ccfdec40c8da9ba9e43bf3ce2d71176 636 SMART SM00382 28 230 2.8E-15 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_10905 5ccfdec40c8da9ba9e43bf3ce2d71176 636 Pfam PF00005 ABC transporter 19 185 4.6E-23 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_10905 5ccfdec40c8da9ba9e43bf3ce2d71176 636 Gene3D G3DSA:1.10.287.380 552 635 9.0E-25 T 17-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 VI35_10905 5ccfdec40c8da9ba9e43bf3ce2d71176 636 Gene3D G3DSA:3.40.50.300 9 279 5.3E-65 T 17-10-2018 VI35_10905 5ccfdec40c8da9ba9e43bf3ce2d71176 636 ProSitePatterns PS00211 ABC transporters family signature. 441 455 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_10905 5ccfdec40c8da9ba9e43bf3ce2d71176 636 Gene3D G3DSA:3.40.50.300 282 548 1.0E-62 T 17-10-2018 VI35_10905 5ccfdec40c8da9ba9e43bf3ce2d71176 636 Pfam PF16326 ABC transporter C-terminal domain 562 630 1.1E-17 T 17-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 VI35_10905 5ccfdec40c8da9ba9e43bf3ce2d71176 636 SUPERFAMILY SSF52540 10 238 5.06E-49 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_10905 5ccfdec40c8da9ba9e43bf3ce2d71176 636 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_10905 5ccfdec40c8da9ba9e43bf3ce2d71176 636 Pfam PF00005 ABC transporter 336 469 1.8E-24 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_11200 b704b36f44c10b0ae193722fd65eff5c 327 ProSitePatterns PS00356 LacI-type HTH domain signature. 3 21 - T 17-10-2018 VI35_11200 b704b36f44c10b0ae193722fd65eff5c 327 Gene3D G3DSA:3.40.50.2300 61 152 1.1E-19 T 17-10-2018 VI35_11200 b704b36f44c10b0ae193722fd65eff5c 327 Gene3D G3DSA:3.40.50.2300 155 327 2.8E-25 T 17-10-2018 VI35_11200 b704b36f44c10b0ae193722fd65eff5c 327 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 62 246 1.4E-13 T 17-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain VI35_11200 b704b36f44c10b0ae193722fd65eff5c 327 SUPERFAMILY SSF47413 2 58 7.79E-14 T 17-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VI35_11200 b704b36f44c10b0ae193722fd65eff5c 327 SMART SM00354 1 73 2.9E-26 T 17-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VI35_11200 b704b36f44c10b0ae193722fd65eff5c 327 TIGRFAM TIGR02417 fruct_sucro_rep: D-fructose-responsive transcription factor 2 326 5.2E-123 T 17-10-2018 IPR012781 D-fructose-responsive transcription factor GO:0003677|GO:0006355|GO:0009750 VI35_11200 b704b36f44c10b0ae193722fd65eff5c 327 Pfam PF00356 Bacterial regulatory proteins, lacI family 2 50 2.9E-16 T 17-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VI35_11200 b704b36f44c10b0ae193722fd65eff5c 327 SUPERFAMILY SSF53822 60 314 8.83E-40 T 17-10-2018 IPR028082 Periplasmic binding protein-like I VI35_11200 b704b36f44c10b0ae193722fd65eff5c 327 Gene3D G3DSA:1.10.260.40 1 60 1.4E-24 T 17-10-2018 VI35_13325 977746b2076c970050d1a46e2d38edfc 617 Pfam PF02151 UvrB/uvrC motif 209 242 4.4E-8 T 17-10-2018 IPR001943 UVR domain GO:0005515 VI35_13325 977746b2076c970050d1a46e2d38edfc 617 Gene3D G3DSA:3.40.1440.10 10 106 6.4E-32 T 17-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 VI35_13325 977746b2076c970050d1a46e2d38edfc 617 SUPERFAMILY SSF82771 21 104 9.42E-24 T 17-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 VI35_13325 977746b2076c970050d1a46e2d38edfc 617 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 14 595 1.0E-207 T 17-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 VI35_13325 977746b2076c970050d1a46e2d38edfc 617 Gene3D G3DSA:4.10.860.10 205 245 1.4E-5 T 17-10-2018 VI35_13325 977746b2076c970050d1a46e2d38edfc 617 SUPERFAMILY SSF47781 527 615 1.43E-23 T 17-10-2018 IPR010994 RuvA domain 2-like VI35_13325 977746b2076c970050d1a46e2d38edfc 617 SMART SM00278 562 581 0.084 T 17-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 VI35_13325 977746b2076c970050d1a46e2d38edfc 617 SMART SM00278 594 613 0.23 T 17-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 VI35_13325 977746b2076c970050d1a46e2d38edfc 617 SMART SM00465 21 102 1.5E-21 T 17-10-2018 IPR000305 GIY-YIG endonuclease VI35_13325 977746b2076c970050d1a46e2d38edfc 617 Gene3D G3DSA:3.30.420.340 383 558 1.2E-46 T 17-10-2018 IPR038476 UvrC homology region 2 superfamily VI35_13325 977746b2076c970050d1a46e2d38edfc 617 Pfam PF01541 GIY-YIG catalytic domain 22 97 1.5E-12 T 17-10-2018 IPR000305 GIY-YIG endonuclease VI35_13325 977746b2076c970050d1a46e2d38edfc 617 Pfam PF14520 Helix-hairpin-helix domain 563 614 4.1E-10 T 17-10-2018 VI35_13325 977746b2076c970050d1a46e2d38edfc 617 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 390 548 2.7E-45 T 17-10-2018 IPR001162 UvrC family homology region VI35_13325 977746b2076c970050d1a46e2d38edfc 617 SUPERFAMILY SSF46600 195 247 3.27E-13 T 17-10-2018 IPR036876 UVR domain superfamily VI35_13325 977746b2076c970050d1a46e2d38edfc 617 Hamap MF_00203 UvrABC system protein C [uvrC]. 8 613 28.871 T 17-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 VI35_13325 977746b2076c970050d1a46e2d38edfc 617 Gene3D G3DSA:1.10.150.20 561 616 2.6E-24 T 17-10-2018 VI35_02085 5404e4f4a6cb89b8cec2b0e22cffe4d9 397 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 332 393 3.2E-15 T 17-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain VI35_02085 5404e4f4a6cb89b8cec2b0e22cffe4d9 397 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 1 379 3.2E-93 T 17-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G VI35_02085 5404e4f4a6cb89b8cec2b0e22cffe4d9 397 Pfam PF00460 Flagella basal body rod protein 3 33 1.6E-8 T 17-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 VI35_02085 5404e4f4a6cb89b8cec2b0e22cffe4d9 397 Pfam PF07559 Flagellar basal body protein FlaE 173 278 3.5E-21 T 17-10-2018 IPR011491 Flagellar hook protein FlgE VI35_02085 5404e4f4a6cb89b8cec2b0e22cffe4d9 397 Gene3D G3DSA:2.60.98.20 144 279 5.4E-31 T 17-10-2018 IPR037058 Flagellar hook protein FlgE superfamily VI35_02085 5404e4f4a6cb89b8cec2b0e22cffe4d9 397 SUPERFAMILY SSF117143 73 358 4.32E-81 T 17-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like VI35_15680 4f3162cc3b8bd267cf52287e5bba8176 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 8.2E-22 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_15680 4f3162cc3b8bd267cf52287e5bba8176 306 SUPERFAMILY SSF53850 93 295 2.17E-37 T 17-10-2018 VI35_15680 4f3162cc3b8bd267cf52287e5bba8176 306 Gene3D G3DSA:1.10.10.10 7 94 1.5E-24 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_15680 4f3162cc3b8bd267cf52287e5bba8176 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 7.7E-11 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_15680 4f3162cc3b8bd267cf52287e5bba8176 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 7.7E-11 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_15680 4f3162cc3b8bd267cf52287e5bba8176 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 7.7E-11 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_15680 4f3162cc3b8bd267cf52287e5bba8176 306 Gene3D G3DSA:3.40.190.10 163 261 5.4E-64 T 17-10-2018 VI35_15680 4f3162cc3b8bd267cf52287e5bba8176 306 Gene3D G3DSA:3.40.190.10 103 288 5.4E-64 T 17-10-2018 VI35_15680 4f3162cc3b8bd267cf52287e5bba8176 306 SUPERFAMILY SSF46785 3 85 1.08E-23 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_15680 4f3162cc3b8bd267cf52287e5bba8176 306 Pfam PF03466 LysR substrate binding domain 91 290 1.4E-36 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_03930 5b7db699a396dff4dbd4323d0fb75091 238 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 2 70 5.0E-21 T 17-10-2018 IPR010221 VCBS repeat VI35_03930 5b7db699a396dff4dbd4323d0fb75091 238 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 197 233 1.5E-6 T 17-10-2018 IPR010221 VCBS repeat VI35_05465 51e6539f0d94999aee6f094cad6923e4 1180 Pfam PF10371 Domain of unknown function 631 682 2.7E-23 T 17-10-2018 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 VI35_05465 51e6539f0d94999aee6f094cad6923e4 1180 Gene3D G3DSA:4.10.780.10 635 672 1.6E-6 T 17-10-2018 IPR037112 Pyruvate-flavodoxin oxidoreductase, EKR domain superfamily VI35_05465 51e6539f0d94999aee6f094cad6923e4 1180 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 265 347 6.9E-14 T 17-10-2018 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II VI35_05465 51e6539f0d94999aee6f094cad6923e4 1180 Gene3D G3DSA:3.30.70.20 673 795 2.8E-38 T 17-10-2018 VI35_05465 51e6539f0d94999aee6f094cad6923e4 1180 Gene3D G3DSA:3.40.920.10 421 627 3.9E-71 T 17-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 VI35_05465 51e6539f0d94999aee6f094cad6923e4 1180 SUPERFAMILY SSF54862 669 841 4.33E-23 T 17-10-2018 VI35_05465 51e6539f0d94999aee6f094cad6923e4 1180 TIGRFAM TIGR02176 pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase 1 1172 0.0 T 17-10-2018 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 VI35_05465 51e6539f0d94999aee6f094cad6923e4 1180 SUPERFAMILY SSF52518 800 1173 4.02E-120 T 17-10-2018 IPR029061 Thiamin diphosphate-binding fold VI35_05465 51e6539f0d94999aee6f094cad6923e4 1180 Gene3D G3DSA:3.40.50.970 798 1175 9.0E-153 T 17-10-2018 VI35_05465 51e6539f0d94999aee6f094cad6923e4 1180 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 430 611 1.2E-29 T 17-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 VI35_05465 51e6539f0d94999aee6f094cad6923e4 1180 Pfam PF13484 4Fe-4S double cluster binding domain 693 761 1.8E-10 T 17-10-2018 VI35_05465 51e6539f0d94999aee6f094cad6923e4 1180 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 961 1073 7.8E-10 T 17-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 VI35_05465 51e6539f0d94999aee6f094cad6923e4 1180 SUPERFAMILY SSF53323 423 672 8.89E-72 T 17-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 VI35_05465 51e6539f0d94999aee6f094cad6923e4 1180 Gene3D G3DSA:3.40.50.970 1 254 7.7E-105 T 17-10-2018 VI35_05465 51e6539f0d94999aee6f094cad6923e4 1180 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 13 243 1.2E-78 T 17-10-2018 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 VI35_05465 51e6539f0d94999aee6f094cad6923e4 1180 Gene3D G3DSA:3.40.50.920 255 415 3.6E-55 T 17-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 VI35_05465 51e6539f0d94999aee6f094cad6923e4 1180 SMART SM00890 626 683 9.9E-30 T 17-10-2018 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 VI35_05465 51e6539f0d94999aee6f094cad6923e4 1180 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 749 760 - T 17-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VI35_05465 51e6539f0d94999aee6f094cad6923e4 1180 PIRSF PIRSF000159 1 1180 0.0 T 17-10-2018 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 VI35_05465 51e6539f0d94999aee6f094cad6923e4 1180 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 693 704 - T 17-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VI35_05465 51e6539f0d94999aee6f094cad6923e4 1180 SUPERFAMILY SSF52518 2 254 5.3E-72 T 17-10-2018 IPR029061 Thiamin diphosphate-binding fold VI35_05465 51e6539f0d94999aee6f094cad6923e4 1180 SUPERFAMILY SSF52922 256 409 1.03E-42 T 17-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 VI35_11725 9cc97b1b11c7861a0221f53a4180ee1f 527 SUPERFAMILY SSF55890 322 402 1.44E-5 T 17-10-2018 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 VI35_11725 9cc97b1b11c7861a0221f53a4180ee1f 527 Gene3D G3DSA:3.30.450.20 195 310 8.4E-18 T 17-10-2018 VI35_11725 9cc97b1b11c7861a0221f53a4180ee1f 527 Gene3D G3DSA:3.30.450.20 30 160 1.7E-40 T 17-10-2018 VI35_11725 9cc97b1b11c7861a0221f53a4180ee1f 527 SMART SM00387 417 527 2.2E-18 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_11725 9cc97b1b11c7861a0221f53a4180ee1f 527 PRINTS PR00344 Bacterial sensor protein C-terminal signature 476 486 1.6E-5 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_11725 9cc97b1b11c7861a0221f53a4180ee1f 527 PRINTS PR00344 Bacterial sensor protein C-terminal signature 488 506 1.6E-5 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_11725 9cc97b1b11c7861a0221f53a4180ee1f 527 PRINTS PR00344 Bacterial sensor protein C-terminal signature 458 472 1.6E-5 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_11725 9cc97b1b11c7861a0221f53a4180ee1f 527 Gene3D G3DSA:3.30.565.10 375 523 6.0E-25 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_11725 9cc97b1b11c7861a0221f53a4180ee1f 527 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 421 526 1.1E-14 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_11725 9cc97b1b11c7861a0221f53a4180ee1f 527 SUPERFAMILY SSF55874 391 525 7.47E-24 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_11725 9cc97b1b11c7861a0221f53a4180ee1f 527 Pfam PF17203 Single cache domain 3 38 167 1.8E-24 T 17-10-2018 IPR033463 Single cache domain 3 VI35_11725 9cc97b1b11c7861a0221f53a4180ee1f 527 SUPERFAMILY SSF55785 207 309 4.42E-6 T 17-10-2018 IPR035965 PAS domain superfamily VI35_11725 9cc97b1b11c7861a0221f53a4180ee1f 527 SUPERFAMILY SSF103190 34 165 6.67E-35 T 17-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VI35_09855 52efbca94a1a105ffe060e01ca939061 538 PIRSF PIRSF002741 2 538 2.3E-107 T 17-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 VI35_09855 52efbca94a1a105ffe060e01ca939061 538 Gene3D G3DSA:3.10.105.10 292 507 3.9E-183 T 17-10-2018 VI35_09855 52efbca94a1a105ffe060e01ca939061 538 Gene3D G3DSA:3.90.76.10 67 191 3.9E-183 T 17-10-2018 VI35_09855 52efbca94a1a105ffe060e01ca939061 538 SUPERFAMILY SSF53850 32 528 2.35E-138 T 17-10-2018 VI35_09855 52efbca94a1a105ffe060e01ca939061 538 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 85 458 2.9E-85 T 17-10-2018 IPR000914 Solute-binding protein family 5 domain VI35_09855 52efbca94a1a105ffe060e01ca939061 538 Gene3D G3DSA:3.40.190.10 38 519 3.9E-183 T 17-10-2018 VI35_18685 7105a17283db6a9b405b4a688417019a 636 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 558 628 3.2E-22 T 17-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 VI35_18685 7105a17283db6a9b405b4a688417019a 636 Pfam PF01751 Toprim domain 413 522 2.0E-12 T 17-10-2018 IPR006171 TOPRIM domain VI35_18685 7105a17283db6a9b405b4a688417019a 636 Pfam PF00204 DNA gyrase B 218 384 9.9E-40 T 17-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VI35_18685 7105a17283db6a9b405b4a688417019a 636 PRINTS PR00418 DNA topoisomerase II family signature 31 46 2.7E-57 T 17-10-2018 VI35_18685 7105a17283db6a9b405b4a688417019a 636 PRINTS PR00418 DNA topoisomerase II family signature 266 279 2.7E-57 T 17-10-2018 VI35_18685 7105a17283db6a9b405b4a688417019a 636 PRINTS PR00418 DNA topoisomerase II family signature 414 428 2.7E-57 T 17-10-2018 VI35_18685 7105a17283db6a9b405b4a688417019a 636 PRINTS PR00418 DNA topoisomerase II family signature 479 495 2.7E-57 T 17-10-2018 VI35_18685 7105a17283db6a9b405b4a688417019a 636 PRINTS PR00418 DNA topoisomerase II family signature 517 529 2.7E-57 T 17-10-2018 VI35_18685 7105a17283db6a9b405b4a688417019a 636 PRINTS PR00418 DNA topoisomerase II family signature 66 79 2.7E-57 T 17-10-2018 VI35_18685 7105a17283db6a9b405b4a688417019a 636 PRINTS PR00418 DNA topoisomerase II family signature 497 514 2.7E-57 T 17-10-2018 VI35_18685 7105a17283db6a9b405b4a688417019a 636 PRINTS PR00418 DNA topoisomerase II family signature 109 123 2.7E-57 T 17-10-2018 VI35_18685 7105a17283db6a9b405b4a688417019a 636 PRINTS PR00418 DNA topoisomerase II family signature 562 578 2.7E-57 T 17-10-2018 VI35_18685 7105a17283db6a9b405b4a688417019a 636 SMART SM00387 27 173 1.7E-19 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_18685 7105a17283db6a9b405b4a688417019a 636 Gene3D G3DSA:3.40.50.670 390 631 4.1E-87 T 17-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VI35_18685 7105a17283db6a9b405b4a688417019a 636 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 28 170 3.9E-16 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_18685 7105a17283db6a9b405b4a688417019a 636 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 2 636 46.553 T 17-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VI35_18685 7105a17283db6a9b405b4a688417019a 636 PRINTS PR01098 Topoisomerase IV subunit B signature 362 387 3.8E-124 T 17-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VI35_18685 7105a17283db6a9b405b4a688417019a 636 PRINTS PR01098 Topoisomerase IV subunit B signature 192 213 3.8E-124 T 17-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VI35_18685 7105a17283db6a9b405b4a688417019a 636 PRINTS PR01098 Topoisomerase IV subunit B signature 238 261 3.8E-124 T 17-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VI35_18685 7105a17283db6a9b405b4a688417019a 636 PRINTS PR01098 Topoisomerase IV subunit B signature 311 326 3.8E-124 T 17-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VI35_18685 7105a17283db6a9b405b4a688417019a 636 PRINTS PR01098 Topoisomerase IV subunit B signature 135 149 3.8E-124 T 17-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VI35_18685 7105a17283db6a9b405b4a688417019a 636 PRINTS PR01098 Topoisomerase IV subunit B signature 503 519 3.8E-124 T 17-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VI35_18685 7105a17283db6a9b405b4a688417019a 636 PRINTS PR01098 Topoisomerase IV subunit B signature 338 361 3.8E-124 T 17-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VI35_18685 7105a17283db6a9b405b4a688417019a 636 PRINTS PR01098 Topoisomerase IV subunit B signature 469 481 3.8E-124 T 17-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VI35_18685 7105a17283db6a9b405b4a688417019a 636 PRINTS PR01098 Topoisomerase IV subunit B signature 174 191 3.8E-124 T 17-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VI35_18685 7105a17283db6a9b405b4a688417019a 636 PRINTS PR01098 Topoisomerase IV subunit B signature 294 310 3.8E-124 T 17-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VI35_18685 7105a17283db6a9b405b4a688417019a 636 PRINTS PR01098 Topoisomerase IV subunit B signature 448 469 3.8E-124 T 17-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VI35_18685 7105a17283db6a9b405b4a688417019a 636 PRINTS PR01098 Topoisomerase IV subunit B signature 149 164 3.8E-124 T 17-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VI35_18685 7105a17283db6a9b405b4a688417019a 636 PRINTS PR01098 Topoisomerase IV subunit B signature 26 39 3.8E-124 T 17-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VI35_18685 7105a17283db6a9b405b4a688417019a 636 PRINTS PR01098 Topoisomerase IV subunit B signature 537 559 3.8E-124 T 17-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VI35_18685 7105a17283db6a9b405b4a688417019a 636 SMART SM00433 34 632 9.0E-197 T 17-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VI35_18685 7105a17283db6a9b405b4a688417019a 636 SUPERFAMILY SSF55874 4 215 2.58E-66 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_18685 7105a17283db6a9b405b4a688417019a 636 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 3 632 0.0 T 17-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VI35_18685 7105a17283db6a9b405b4a688417019a 636 SUPERFAMILY SSF54211 217 382 2.28E-45 T 17-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VI35_18685 7105a17283db6a9b405b4a688417019a 636 Gene3D G3DSA:3.30.230.10 216 389 1.0E-54 T 17-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VI35_18685 7105a17283db6a9b405b4a688417019a 636 ProSitePatterns PS00177 DNA topoisomerase II signature. 416 424 - T 17-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VI35_18685 7105a17283db6a9b405b4a688417019a 636 Gene3D G3DSA:3.30.565.10 2 215 3.0E-73 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_18685 7105a17283db6a9b405b4a688417019a 636 SUPERFAMILY SSF56719 388 629 3.4E-75 T 17-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 VI35_06490 d63d223eb063720be5296bf4afc8e622 245 PIRSF PIRSF006325 1 241 2.5E-114 T 17-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 VI35_06490 d63d223eb063720be5296bf4afc8e622 245 TIGRFAM TIGR00740 TIGR00740: tRNA (cmo5U34)-methyltransferase 3 240 3.5E-108 T 17-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 VI35_06490 d63d223eb063720be5296bf4afc8e622 245 SUPERFAMILY SSF53335 18 240 1.55E-42 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_06490 d63d223eb063720be5296bf4afc8e622 245 Pfam PF13649 Methyltransferase domain 60 156 1.5E-14 T 17-10-2018 VI35_06490 d63d223eb063720be5296bf4afc8e622 245 Gene3D G3DSA:3.40.50.150 16 245 8.4E-65 T 17-10-2018 VI35_06490 d63d223eb063720be5296bf4afc8e622 245 Hamap MF_01589 Carboxy-S-adenosyl-L-methionine synthase [cmoA]. 1 240 42.33 T 17-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 VI35_20510 50acfced75dde571fb974ee2825af3cf 143 Pfam PF03748 Flagellar basal body-associated protein FliL 41 143 9.8E-19 T 17-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 VI35_20595 c9ffab48f3def4d57530a9e90ca3f196 341 Gene3D G3DSA:3.40.50.720 153 286 1.8E-119 T 17-10-2018 VI35_20595 c9ffab48f3def4d57530a9e90ca3f196 341 SUPERFAMILY SSF50129 1 173 1.98E-54 T 17-10-2018 IPR011032 GroES-like superfamily VI35_20595 c9ffab48f3def4d57530a9e90ca3f196 341 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 134 1.4E-32 T 17-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 VI35_20595 c9ffab48f3def4d57530a9e90ca3f196 341 Pfam PF00107 Zinc-binding dehydrogenase 174 301 2.4E-26 T 17-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 VI35_20595 c9ffab48f3def4d57530a9e90ca3f196 341 Gene3D G3DSA:3.90.180.10 21 328 1.8E-119 T 17-10-2018 VI35_20595 c9ffab48f3def4d57530a9e90ca3f196 341 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 17-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 VI35_20595 c9ffab48f3def4d57530a9e90ca3f196 341 TIGRFAM TIGR00692 tdh: L-threonine 3-dehydrogenase 3 340 9.6E-178 T 17-10-2018 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00260+1.1.1.103|MetaCyc: PWY-7378 VI35_20595 c9ffab48f3def4d57530a9e90ca3f196 341 Hamap MF_00627 L-threonine 3-dehydrogenase [tdh]. 1 340 60.508 T 17-10-2018 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00260+1.1.1.103|MetaCyc: PWY-7378 VI35_20595 c9ffab48f3def4d57530a9e90ca3f196 341 SUPERFAMILY SSF51735 141 305 1.18E-36 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_20595 c9ffab48f3def4d57530a9e90ca3f196 341 SMART SM00829 12 338 1.2E-4 T 17-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 VI35_02320 6f703fbebe75c8826209c5d51b0dbd7e 413 Pfam PF00482 Type II secretion system (T2SS), protein F 79 201 2.8E-32 T 17-10-2018 IPR018076 Type II secretion system F domain VI35_02320 6f703fbebe75c8826209c5d51b0dbd7e 413 Pfam PF00482 Type II secretion system (T2SS), protein F 282 404 2.4E-26 T 17-10-2018 IPR018076 Type II secretion system F domain VI35_02320 6f703fbebe75c8826209c5d51b0dbd7e 413 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 173 201 - T 17-10-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 VI35_02320 6f703fbebe75c8826209c5d51b0dbd7e 413 PRINTS PR00812 Bacterial general secretion pathway protein F signature 173 201 6.4E-18 T 17-10-2018 IPR003004 GspF/PilC family VI35_02320 6f703fbebe75c8826209c5d51b0dbd7e 413 PRINTS PR00812 Bacterial general secretion pathway protein F signature 393 412 6.4E-18 T 17-10-2018 IPR003004 GspF/PilC family VI35_02320 6f703fbebe75c8826209c5d51b0dbd7e 413 PRINTS PR00812 Bacterial general secretion pathway protein F signature 377 391 6.4E-18 T 17-10-2018 IPR003004 GspF/PilC family VI35_02320 6f703fbebe75c8826209c5d51b0dbd7e 413 PRINTS PR00812 Bacterial general secretion pathway protein F signature 74 86 6.4E-18 T 17-10-2018 IPR003004 GspF/PilC family VI35_02320 6f703fbebe75c8826209c5d51b0dbd7e 413 Gene3D G3DSA:1.20.81.30 265 374 6.7E-26 T 17-10-2018 VI35_02320 6f703fbebe75c8826209c5d51b0dbd7e 413 Gene3D G3DSA:1.20.81.30 66 180 8.2E-30 T 17-10-2018 VI35_00055 78e477738551750ee49b970b3192f16f 274 Gene3D G3DSA:1.10.10.60 160 213 2.1E-9 T 17-10-2018 VI35_00055 78e477738551750ee49b970b3192f16f 274 SMART SM00342 170 252 7.4E-19 T 17-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VI35_00055 78e477738551750ee49b970b3192f16f 274 SUPERFAMILY SSF46689 206 254 1.21E-7 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_00055 78e477738551750ee49b970b3192f16f 274 Gene3D G3DSA:2.60.120.10 27 97 3.5E-5 T 17-10-2018 IPR014710 RmlC-like jelly roll fold VI35_00055 78e477738551750ee49b970b3192f16f 274 Gene3D G3DSA:1.10.10.60 214 262 3.0E-8 T 17-10-2018 VI35_00055 78e477738551750ee49b970b3192f16f 274 Pfam PF12833 Helix-turn-helix domain 176 253 4.0E-20 T 17-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VI35_00055 78e477738551750ee49b970b3192f16f 274 SUPERFAMILY SSF51182 24 174 6.03E-13 T 17-10-2018 IPR011051 RmlC-like cupin domain superfamily VI35_00055 78e477738551750ee49b970b3192f16f 274 Pfam PF02311 AraC-like ligand binding domain 21 92 1.3E-5 T 17-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 VI35_14230 f8d7b376959b68423daddfa5266ae84e 1042 Gene3D G3DSA:1.20.1640.10 510 1025 1.6E-266 T 17-10-2018 VI35_14230 f8d7b376959b68423daddfa5266ae84e 1042 Gene3D G3DSA:3.30.70.1430 42 810 1.6E-266 T 17-10-2018 VI35_14230 f8d7b376959b68423daddfa5266ae84e 1042 Gene3D G3DSA:3.30.70.1430 560 659 1.6E-266 T 17-10-2018 VI35_14230 f8d7b376959b68423daddfa5266ae84e 1042 SUPERFAMILY SSF82714 716 800 7.06E-19 T 17-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VI35_14230 f8d7b376959b68423daddfa5266ae84e 1042 Gene3D G3DSA:3.30.70.1440 660 860 1.6E-266 T 17-10-2018 VI35_14230 f8d7b376959b68423daddfa5266ae84e 1042 SUPERFAMILY SSF82866 294 498 1.24E-39 T 17-10-2018 VI35_14230 f8d7b376959b68423daddfa5266ae84e 1042 Gene3D G3DSA:1.20.1640.10 13 509 1.6E-266 T 17-10-2018 VI35_14230 f8d7b376959b68423daddfa5266ae84e 1042 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 1 1033 0.0 T 17-10-2018 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 VI35_14230 f8d7b376959b68423daddfa5266ae84e 1042 SUPERFAMILY SSF82693 137 328 2.88E-22 T 17-10-2018 VI35_14230 f8d7b376959b68423daddfa5266ae84e 1042 SUPERFAMILY SSF82866 801 1031 3.79E-46 T 17-10-2018 VI35_14230 f8d7b376959b68423daddfa5266ae84e 1042 PRINTS PR00702 Acriflavin resistance protein family signature 12 36 8.2E-29 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_14230 f8d7b376959b68423daddfa5266ae84e 1042 PRINTS PR00702 Acriflavin resistance protein family signature 545 562 8.2E-29 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_14230 f8d7b376959b68423daddfa5266ae84e 1042 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 8.2E-29 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_14230 f8d7b376959b68423daddfa5266ae84e 1042 PRINTS PR00702 Acriflavin resistance protein family signature 361 382 8.2E-29 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_14230 f8d7b376959b68423daddfa5266ae84e 1042 PRINTS PR00702 Acriflavin resistance protein family signature 471 494 8.2E-29 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_14230 f8d7b376959b68423daddfa5266ae84e 1042 PRINTS PR00702 Acriflavin resistance protein family signature 334 357 8.2E-29 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_14230 f8d7b376959b68423daddfa5266ae84e 1042 PRINTS PR00702 Acriflavin resistance protein family signature 389 413 8.2E-29 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_14230 f8d7b376959b68423daddfa5266ae84e 1042 SUPERFAMILY SSF82693 46 128 5.76E-20 T 17-10-2018 VI35_14230 f8d7b376959b68423daddfa5266ae84e 1042 Pfam PF00873 AcrB/AcrD/AcrF family 5 1027 1.4E-238 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_14230 f8d7b376959b68423daddfa5266ae84e 1042 Gene3D G3DSA:3.30.70.1320 135 330 1.6E-266 T 17-10-2018 VI35_14230 f8d7b376959b68423daddfa5266ae84e 1042 Gene3D G3DSA:3.30.2090.10 714 802 1.6E-266 T 17-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VI35_14230 f8d7b376959b68423daddfa5266ae84e 1042 SUPERFAMILY SSF82714 185 269 6.15E-16 T 17-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VI35_14230 f8d7b376959b68423daddfa5266ae84e 1042 Gene3D G3DSA:3.30.2090.10 181 272 1.6E-266 T 17-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VI35_12345 2093f940518cd942f00b03b85d3e69c8 127 TIGRFAM TIGR01999 iscU: FeS cluster assembly scaffold IscU 3 125 1.0E-68 T 17-10-2018 IPR011339 ISC system FeS cluster assembly, IscU scaffold GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 VI35_12345 2093f940518cd942f00b03b85d3e69c8 127 SUPERFAMILY SSF82649 1 125 7.33E-50 T 17-10-2018 VI35_12345 2093f940518cd942f00b03b85d3e69c8 127 Gene3D G3DSA:3.90.1010.10 1 127 5.0E-59 T 17-10-2018 VI35_12345 2093f940518cd942f00b03b85d3e69c8 127 Pfam PF01592 NifU-like N terminal domain 2 125 2.2E-56 T 17-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 VI35_14910 fefe40116a1ee1ccc90bf5abdcb3181e 282 Gene3D G3DSA:1.25.40.10 198 282 2.6E-19 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_14910 fefe40116a1ee1ccc90bf5abdcb3181e 282 Pfam PF00085 Thioredoxin 3 106 1.5E-12 T 17-10-2018 IPR013766 Thioredoxin domain GO:0045454 VI35_14910 fefe40116a1ee1ccc90bf5abdcb3181e 282 Pfam PF14559 Tetratricopeptide repeat 125 188 3.9E-10 T 17-10-2018 VI35_14910 fefe40116a1ee1ccc90bf5abdcb3181e 282 Gene3D G3DSA:3.40.30.10 1 110 4.4E-16 T 17-10-2018 VI35_14910 fefe40116a1ee1ccc90bf5abdcb3181e 282 SUPERFAMILY SSF48452 121 275 5.51E-7 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_14910 fefe40116a1ee1ccc90bf5abdcb3181e 282 Gene3D G3DSA:1.25.40.10 111 197 1.0E-17 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_14910 fefe40116a1ee1ccc90bf5abdcb3181e 282 Pfam PF14561 Tetratricopeptide repeat 196 282 2.1E-22 T 17-10-2018 VI35_14910 fefe40116a1ee1ccc90bf5abdcb3181e 282 SUPERFAMILY SSF52833 2 111 1.15E-16 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_08680 3aacec6a3493cd3ed3f3580288da1fb9 553 Gene3D G3DSA:3.30.300.310 442 546 1.1E-27 T 17-10-2018 VI35_08680 3aacec6a3493cd3ed3f3580288da1fb9 553 Pfam PF13193 AMP-binding enzyme C-terminal domain 455 530 2.2E-10 T 17-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain VI35_08680 3aacec6a3493cd3ed3f3580288da1fb9 553 SUPERFAMILY SSF56801 8 541 2.75E-124 T 17-10-2018 VI35_08680 3aacec6a3493cd3ed3f3580288da1fb9 553 Pfam PF00501 AMP-binding enzyme 37 446 1.7E-74 T 17-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 VI35_08680 3aacec6a3493cd3ed3f3580288da1fb9 553 ProSitePatterns PS00455 Putative AMP-binding domain signature. 195 206 - T 17-10-2018 IPR020845 AMP-binding, conserved site VI35_08680 3aacec6a3493cd3ed3f3580288da1fb9 553 Gene3D G3DSA:3.40.50.12780 8 440 1.4E-129 T 17-10-2018 VI35_08680 3aacec6a3493cd3ed3f3580288da1fb9 553 TIGRFAM TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase 9 537 9.4E-252 T 17-10-2018 IPR011963 2,3-dihydroxybenzoate-AMP ligase GO:0008668|GO:0019290 VI35_15080 76ce622c227949ee7f0d739bf1b8c5e2 379 Pfam PF00990 Diguanylate cyclase, GGDEF domain 201 358 5.1E-45 T 17-10-2018 IPR000160 GGDEF domain VI35_15080 76ce622c227949ee7f0d739bf1b8c5e2 379 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 198 362 2.6E-46 T 17-10-2018 IPR000160 GGDEF domain VI35_15080 76ce622c227949ee7f0d739bf1b8c5e2 379 SMART SM00267 189 363 8.5E-61 T 17-10-2018 IPR000160 GGDEF domain VI35_15080 76ce622c227949ee7f0d739bf1b8c5e2 379 SUPERFAMILY SSF55073 205 361 3.84E-48 T 17-10-2018 IPR029787 Nucleotide cyclase VI35_15080 76ce622c227949ee7f0d739bf1b8c5e2 379 Gene3D G3DSA:3.30.70.270 191 363 6.4E-56 T 17-10-2018 VI35_11535 b86447dc59515b5d381725f09443f0af 77 SUPERFAMILY SSF55174 5 68 9.16E-18 T 17-10-2018 VI35_11535 b86447dc59515b5d381725f09443f0af 77 Gene3D G3DSA:3.10.290.10 1 69 3.2E-23 T 17-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 VI35_11535 b86447dc59515b5d381725f09443f0af 77 Pfam PF13275 S4 domain 8 68 2.2E-21 T 17-10-2018 VI35_01540 ee9df54771837f32d02e59090ecb9c5c 277 SUPERFAMILY SSF53649 2 256 7.36E-43 T 17-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VI35_01540 ee9df54771837f32d02e59090ecb9c5c 277 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 147 208 2.6E-11 T 17-10-2018 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 VI35_01540 ee9df54771837f32d02e59090ecb9c5c 277 Gene3D G3DSA:3.40.720.10 1 276 1.9E-31 T 17-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VI35_15560 8451f39c98281d3d2281c40b516ab576 275 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 3 69 1.9E-25 T 17-10-2018 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117 VI35_15560 8451f39c98281d3d2281c40b516ab576 275 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 175 209 2.0E-12 T 17-10-2018 IPR001451 Hexapeptide repeat VI35_15560 8451f39c98281d3d2281c40b516ab576 275 SUPERFAMILY SSF51161 1 256 2.22E-77 T 17-10-2018 IPR011004 Trimeric LpxA-like superfamily VI35_15560 8451f39c98281d3d2281c40b516ab576 275 TIGRFAM TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 3 273 5.8E-149 T 17-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 VI35_15560 8451f39c98281d3d2281c40b516ab576 275 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 132 166 5.3E-4 T 17-10-2018 IPR001451 Hexapeptide repeat VI35_15560 8451f39c98281d3d2281c40b516ab576 275 Gene3D G3DSA:2.160.10.10 87 257 1.6E-56 T 17-10-2018 VI35_15560 8451f39c98281d3d2281c40b516ab576 275 Hamap MF_00811 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 1 272 57.113 T 17-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 VI35_15560 8451f39c98281d3d2281c40b516ab576 275 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 134 162 - T 17-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 VI35_15560 8451f39c98281d3d2281c40b516ab576 275 Gene3D G3DSA:1.10.166.10 1 70 9.3E-31 T 17-10-2018 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily KEGG: 00300+2.3.1.117 VI35_20600 033f2eb5378bacea6278beab87a82a80 136 Gene3D G3DSA:1.10.760.10 50 136 3.2E-34 T 17-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VI35_20600 033f2eb5378bacea6278beab87a82a80 136 SUPERFAMILY SSF46626 27 132 8.45E-20 T 17-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VI35_20600 033f2eb5378bacea6278beab87a82a80 136 PRINTS PR00607 Class IE cytochrome C signature 64 75 7.4E-13 T 17-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 VI35_20600 033f2eb5378bacea6278beab87a82a80 136 PRINTS PR00607 Class IE cytochrome C signature 75 85 7.4E-13 T 17-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 VI35_20600 033f2eb5378bacea6278beab87a82a80 136 PRINTS PR00607 Class IE cytochrome C signature 122 133 7.4E-13 T 17-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 VI35_20600 033f2eb5378bacea6278beab87a82a80 136 PRINTS PR00607 Class IE cytochrome C signature 107 119 7.4E-13 T 17-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 VI35_20600 033f2eb5378bacea6278beab87a82a80 136 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 55 132 8.9E-16 T 17-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_17965 aa5d36ef61ee5fa540c9fd1a01c2d1eb 426 Pfam PF00571 CBS domain 275 323 4.1E-4 T 17-10-2018 IPR000644 CBS domain VI35_17965 aa5d36ef61ee5fa540c9fd1a01c2d1eb 426 SUPERFAMILY SSF54631 190 326 1.77E-24 T 17-10-2018 VI35_17965 aa5d36ef61ee5fa540c9fd1a01c2d1eb 426 SUPERFAMILY SSF56176 337 422 2.7E-20 T 17-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 VI35_17965 aa5d36ef61ee5fa540c9fd1a01c2d1eb 426 SMART SM01091 339 417 9.2E-23 T 17-10-2018 IPR005170 Transporter-associated domain VI35_17965 aa5d36ef61ee5fa540c9fd1a01c2d1eb 426 Gene3D G3DSA:3.10.580.10 184 335 6.1E-41 T 17-10-2018 VI35_17965 aa5d36ef61ee5fa540c9fd1a01c2d1eb 426 Gene3D G3DSA:3.30.465.10 337 415 3.4E-25 T 17-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 VI35_17965 aa5d36ef61ee5fa540c9fd1a01c2d1eb 426 Pfam PF03471 Transporter associated domain 341 413 7.9E-16 T 17-10-2018 IPR005170 Transporter-associated domain VI35_17965 aa5d36ef61ee5fa540c9fd1a01c2d1eb 426 Pfam PF01595 Domain of unknown function DUF21 11 179 3.8E-51 T 17-10-2018 IPR002550 CNNM, transmembrane domain VI35_18285 2fd98532dde3d33620dd237251deaebc 454 Pfam PF13481 AAA domain 79 222 9.6E-12 T 17-10-2018 VI35_18285 2fd98532dde3d33620dd237251deaebc 454 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 451 3.8E-221 T 17-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 VI35_18285 2fd98532dde3d33620dd237251deaebc 454 SUPERFAMILY SSF54211 255 454 3.0E-43 T 17-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VI35_18285 2fd98532dde3d33620dd237251deaebc 454 SUPERFAMILY SSF52540 70 289 1.63E-46 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_18285 2fd98532dde3d33620dd237251deaebc 454 PRINTS PR01874 DNA repair protein radA signature 10 34 7.0E-93 T 17-10-2018 VI35_18285 2fd98532dde3d33620dd237251deaebc 454 PRINTS PR01874 DNA repair protein radA signature 83 111 7.0E-93 T 17-10-2018 VI35_18285 2fd98532dde3d33620dd237251deaebc 454 PRINTS PR01874 DNA repair protein radA signature 213 241 7.0E-93 T 17-10-2018 VI35_18285 2fd98532dde3d33620dd237251deaebc 454 PRINTS PR01874 DNA repair protein radA signature 174 198 7.0E-93 T 17-10-2018 VI35_18285 2fd98532dde3d33620dd237251deaebc 454 PRINTS PR01874 DNA repair protein radA signature 124 141 7.0E-93 T 17-10-2018 VI35_18285 2fd98532dde3d33620dd237251deaebc 454 PRINTS PR01874 DNA repair protein radA signature 322 345 7.0E-93 T 17-10-2018 VI35_18285 2fd98532dde3d33620dd237251deaebc 454 PRINTS PR01874 DNA repair protein radA signature 248 274 7.0E-93 T 17-10-2018 VI35_18285 2fd98532dde3d33620dd237251deaebc 454 Hamap MF_01498 DNA repair protein RadA [radA]. 21 452 41.989 T 17-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 VI35_18285 2fd98532dde3d33620dd237251deaebc 454 Pfam PF13541 Subunit ChlI of Mg-chelatase 345 430 1.1E-9 T 17-10-2018 VI35_18285 2fd98532dde3d33620dd237251deaebc 454 SMART SM00382 91 244 1.1E-7 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_18285 2fd98532dde3d33620dd237251deaebc 454 Gene3D G3DSA:3.30.230.10 325 454 7.8E-22 T 17-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VI35_18285 2fd98532dde3d33620dd237251deaebc 454 Gene3D G3DSA:3.40.50.300 66 278 9.5E-37 T 17-10-2018 VI35_19215 57c5823b9fc791648784e37daf0405cd 140 Gene3D G3DSA:3.40.630.30 35 137 8.6E-27 T 17-10-2018 VI35_19215 57c5823b9fc791648784e37daf0405cd 140 SUPERFAMILY SSF55729 34 135 3.71E-23 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_19215 57c5823b9fc791648784e37daf0405cd 140 Pfam PF13673 Acetyltransferase (GNAT) domain 36 120 1.4E-10 T 17-10-2018 IPR000182 GNAT domain VI35_15630 924904a9ce981a10d743d6f1e0f62a22 282 TIGRFAM TIGR03138 QueF: queuine synthase 14 282 8.3E-124 T 17-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 VI35_15630 924904a9ce981a10d743d6f1e0f62a22 282 Gene3D G3DSA:3.30.1130.10 24 140 1.0E-44 T 17-10-2018 VI35_15630 924904a9ce981a10d743d6f1e0f62a22 282 PIRSF PIRSF004750 9 282 9.6E-124 T 17-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 VI35_15630 924904a9ce981a10d743d6f1e0f62a22 282 SUPERFAMILY SSF55620 186 266 1.33E-8 T 17-10-2018 VI35_15630 924904a9ce981a10d743d6f1e0f62a22 282 Pfam PF14489 QueF-like protein 196 269 4.4E-25 T 17-10-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 VI35_15630 924904a9ce981a10d743d6f1e0f62a22 282 Pfam PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term 24 133 2.6E-48 T 17-10-2018 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 VI35_15630 924904a9ce981a10d743d6f1e0f62a22 282 Hamap MF_00817 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 282 161.429 T 17-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 VI35_15630 924904a9ce981a10d743d6f1e0f62a22 282 Gene3D G3DSA:3.30.1130.10 145 282 1.3E-57 T 17-10-2018 VI35_04520 9b543e467ec6513b28264d877eba9781 251 ProSitePatterns PS01070 DNA/RNA non-specific endonucleases active site. 104 112 - T 17-10-2018 IPR018524 DNA/RNA non-specific endonuclease, active site GO:0003676|GO:0016787|GO:0046872 VI35_04520 9b543e467ec6513b28264d877eba9781 251 SMART SM00892 44 236 4.5E-59 T 17-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 VI35_04520 9b543e467ec6513b28264d877eba9781 251 SMART SM00477 45 236 1.1E-51 T 17-10-2018 IPR020821 Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 VI35_04520 9b543e467ec6513b28264d877eba9781 251 Pfam PF01223 DNA/RNA non-specific endonuclease 30 235 1.1E-52 T 17-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 VI35_04520 9b543e467ec6513b28264d877eba9781 251 Gene3D G3DSA:3.40.570.10 25 249 2.8E-71 T 17-10-2018 VI35_04520 9b543e467ec6513b28264d877eba9781 251 SUPERFAMILY SSF54060 29 243 1.88E-66 T 17-10-2018 VI35_01525 2e4e87a9a4222280a64a3e3783a72220 335 Pfam PF08402 TOBE domain 257 330 4.9E-8 T 17-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 VI35_01525 2e4e87a9a4222280a64a3e3783a72220 335 SUPERFAMILY SSF50331 256 329 2.83E-6 T 17-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal VI35_01525 2e4e87a9a4222280a64a3e3783a72220 335 SMART SM00382 28 211 3.6E-20 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_01525 2e4e87a9a4222280a64a3e3783a72220 335 SUPERFAMILY SSF52540 4 240 3.22E-85 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_01525 2e4e87a9a4222280a64a3e3783a72220 335 Pfam PF00005 ABC transporter 20 161 7.4E-35 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_01525 2e4e87a9a4222280a64a3e3783a72220 335 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_01525 2e4e87a9a4222280a64a3e3783a72220 335 Gene3D G3DSA:3.40.50.300 1 238 1.1E-79 T 17-10-2018 VI35_18025 87b011b526b41320144d76352aea8c3b 344 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_18025 87b011b526b41320144d76352aea8c3b 344 Gene3D G3DSA:2.40.50.140 282 332 2.1E-8 T 17-10-2018 VI35_18025 87b011b526b41320144d76352aea8c3b 344 SMART SM00382 28 221 7.0E-16 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_18025 87b011b526b41320144d76352aea8c3b 344 Gene3D G3DSA:2.40.50.940 224 341 2.1E-8 T 17-10-2018 VI35_18025 87b011b526b41320144d76352aea8c3b 344 Pfam PF08402 TOBE domain 275 340 3.1E-5 T 17-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 VI35_18025 87b011b526b41320144d76352aea8c3b 344 Pfam PF00005 ABC transporter 19 163 1.6E-34 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_18025 87b011b526b41320144d76352aea8c3b 344 SUPERFAMILY SSF50331 239 341 4.08E-9 T 17-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal VI35_18025 87b011b526b41320144d76352aea8c3b 344 SUPERFAMILY SSF52540 4 246 1.46E-77 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_18025 87b011b526b41320144d76352aea8c3b 344 Gene3D G3DSA:3.40.50.300 2 223 8.2E-61 T 17-10-2018 VI35_03815 be63a11d1fd4fdaed9ce060592ccbfc2 323 SUPERFAMILY SSF52172 5 137 5.98E-36 T 17-10-2018 IPR011006 CheY-like superfamily VI35_03815 be63a11d1fd4fdaed9ce060592ccbfc2 323 Gene3D G3DSA:3.60.40.10 177 311 2.7E-8 T 17-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 VI35_03815 be63a11d1fd4fdaed9ce060592ccbfc2 323 SMART SM00448 6 118 5.4E-28 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_03815 be63a11d1fd4fdaed9ce060592ccbfc2 323 Gene3D G3DSA:3.40.50.2300 6 142 1.4E-33 T 17-10-2018 VI35_03815 be63a11d1fd4fdaed9ce060592ccbfc2 323 Pfam PF00072 Response regulator receiver domain 8 114 2.1E-25 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_15450 b1cb82b08c4ba761ef3a2c3410acc4fa 427 Pfam PF03222 Tryptophan/tyrosine permease family 29 389 3.6E-15 T 17-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 VI35_15450 b1cb82b08c4ba761ef3a2c3410acc4fa 427 TIGRFAM TIGR00814 stp: serine transporter 18 416 1.6E-179 T 17-10-2018 IPR004694 Hydroxy amino acid transporter GO:0006865|GO:0015171|GO:0016021 VI35_17460 a3ce696eb648fce6a4d488ba9abc60f2 166 ProSitePatterns PS01265 Tpx family signature. 84 95 - T 17-10-2018 IPR018219 Thiol peroxidase conserved site GO:0016684|GO:0055114 KEGG: 00480+1.11.1.15 VI35_17460 a3ce696eb648fce6a4d488ba9abc60f2 166 SUPERFAMILY SSF52833 4 164 5.21E-38 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_17460 a3ce696eb648fce6a4d488ba9abc60f2 166 Hamap MF_00269 Thiol peroxidase [tpx]. 4 166 36.064 T 17-10-2018 IPR002065 Thiol peroxidase Tpx GO:0008379|GO:0016209|GO:0055114 KEGG: 00480+1.11.1.15 VI35_17460 a3ce696eb648fce6a4d488ba9abc60f2 166 Gene3D G3DSA:3.40.30.10 1 166 3.4E-41 T 17-10-2018 VI35_17460 a3ce696eb648fce6a4d488ba9abc60f2 166 Pfam PF08534 Redoxin 21 163 1.4E-23 T 17-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 VI35_14385 9c8d46feb379023375b8f5ee77cf2817 135 Gene3D G3DSA:4.10.430.10 93 135 5.1E-20 T 17-10-2018 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily GO:0003677 VI35_14385 9c8d46feb379023375b8f5ee77cf2817 135 Gene3D G3DSA:1.10.287.1050 1 83 1.1E-29 T 17-10-2018 IPR027454 Histone-like protein H-NS, N-terminal GO:0046983 VI35_14385 9c8d46feb379023375b8f5ee77cf2817 135 PIRSF PIRSF002096 1 135 5.3E-53 T 17-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 VI35_14385 9c8d46feb379023375b8f5ee77cf2817 135 SUPERFAMILY SSF81273 93 135 7.45E-10 T 17-10-2018 VI35_14385 9c8d46feb379023375b8f5ee77cf2817 135 SMART SM00528 89 135 5.9E-19 T 17-10-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 VI35_14385 9c8d46feb379023375b8f5ee77cf2817 135 Pfam PF00816 H-NS histone family 45 128 7.9E-17 T 17-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 VI35_14385 9c8d46feb379023375b8f5ee77cf2817 135 SUPERFAMILY SSF81273 2 58 2.94E-16 T 17-10-2018 VI35_16000 b4b6ee77793c0785809008fa1bb7f38b 878 SMART SM00028 246 279 9.8 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_16000 b4b6ee77793c0785809008fa1bb7f38b 878 SMART SM00028 332 365 24.0 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_16000 b4b6ee77793c0785809008fa1bb7f38b 878 SMART SM00028 763 796 13.0 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_16000 b4b6ee77793c0785809008fa1bb7f38b 878 SMART SM00028 96 129 0.35 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_16000 b4b6ee77793c0785809008fa1bb7f38b 878 SMART SM00028 366 399 0.0017 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_16000 b4b6ee77793c0785809008fa1bb7f38b 878 SUPERFAMILY SSF48452 26 139 4.83E-9 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_16000 b4b6ee77793c0785809008fa1bb7f38b 878 Gene3D G3DSA:1.25.40.10 287 465 3.5E-15 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_16000 b4b6ee77793c0785809008fa1bb7f38b 878 Gene3D G3DSA:1.25.40.10 203 286 1.0E-6 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_16000 b4b6ee77793c0785809008fa1bb7f38b 878 SUPERFAMILY SSF48452 766 857 3.04E-13 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_16000 b4b6ee77793c0785809008fa1bb7f38b 878 SUPERFAMILY SSF48452 205 398 1.59E-16 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_16000 b4b6ee77793c0785809008fa1bb7f38b 878 Pfam PF13469 Sulfotransferase family 505 700 3.5E-38 T 17-10-2018 VI35_16000 b4b6ee77793c0785809008fa1bb7f38b 878 Gene3D G3DSA:1.25.40.10 6 158 2.7E-7 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_16000 b4b6ee77793c0785809008fa1bb7f38b 878 SUPERFAMILY SSF52540 505 744 1.18E-50 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_16000 b4b6ee77793c0785809008fa1bb7f38b 878 Pfam PF13432 Tetratricopeptide repeat 770 820 4.0E-5 T 17-10-2018 VI35_16000 b4b6ee77793c0785809008fa1bb7f38b 878 Gene3D G3DSA:1.25.40.10 763 873 8.2E-14 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_16000 b4b6ee77793c0785809008fa1bb7f38b 878 Pfam PF14559 Tetratricopeptide repeat 344 405 1.2E-11 T 17-10-2018 VI35_16000 b4b6ee77793c0785809008fa1bb7f38b 878 Gene3D G3DSA:3.40.50.300 466 749 2.5E-59 T 17-10-2018 VI35_00290 4b8e27718ef7db6319bd08bd4191d132 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 177 189 1.7E-11 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_00290 4b8e27718ef7db6319bd08bd4191d132 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 161 177 1.7E-11 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_00290 4b8e27718ef7db6319bd08bd4191d132 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 147 161 1.7E-11 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_00290 4b8e27718ef7db6319bd08bd4191d132 207 SUPERFAMILY SSF52172 1 160 4.7E-32 T 17-10-2018 IPR011006 CheY-like superfamily VI35_00290 4b8e27718ef7db6319bd08bd4191d132 207 SMART SM00421 144 201 1.3E-20 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_00290 4b8e27718ef7db6319bd08bd4191d132 207 ProSitePatterns PS00622 LuxR-type HTH domain signature. 161 188 - T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_00290 4b8e27718ef7db6319bd08bd4191d132 207 SUPERFAMILY SSF46894 137 206 1.67E-18 T 17-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VI35_00290 4b8e27718ef7db6319bd08bd4191d132 207 Pfam PF00196 Bacterial regulatory proteins, luxR family 146 201 9.0E-20 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_00290 4b8e27718ef7db6319bd08bd4191d132 207 Pfam PF00072 Response regulator receiver domain 4 111 9.4E-27 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_00290 4b8e27718ef7db6319bd08bd4191d132 207 SMART SM00448 2 114 6.1E-28 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_00290 4b8e27718ef7db6319bd08bd4191d132 207 Gene3D G3DSA:3.40.50.12740 2 207 4.6E-52 T 17-10-2018 VI35_11265 838e35b9b76199e469b85cad0202057b 481 Gene3D G3DSA:2.10.10.20 436 480 1.8E-16 T 17-10-2018 VI35_11265 838e35b9b76199e469b85cad0202057b 481 SUPERFAMILY SSF53955 87 350 2.73E-55 T 17-10-2018 IPR023346 Lysozyme-like domain superfamily VI35_11265 838e35b9b76199e469b85cad0202057b 481 Pfam PF00182 Chitinase class I 106 325 1.0E-31 T 17-10-2018 IPR000726 Glycoside hydrolase, family 19, catalytic GO:0004568|GO:0006032|GO:0016998 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 VI35_11265 838e35b9b76199e469b85cad0202057b 481 Gene3D G3DSA:3.30.20.10 178 248 3.2E-77 T 17-10-2018 VI35_11265 838e35b9b76199e469b85cad0202057b 481 SMART SM00495 438 480 9.7E-18 T 17-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VI35_11265 838e35b9b76199e469b85cad0202057b 481 SUPERFAMILY SSF51055 433 480 3.14E-16 T 17-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VI35_11265 838e35b9b76199e469b85cad0202057b 481 Gene3D G3DSA:1.10.530.10 105 346 3.2E-77 T 17-10-2018 VI35_11265 838e35b9b76199e469b85cad0202057b 481 Pfam PF02839 Carbohydrate binding domain 455 477 8.4E-7 T 17-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VI35_12850 732c5179d95d9f6e4ee16c335ff0ae38 270 Pfam PF03618 Kinase/pyrophosphorylase 4 260 2.3E-76 T 17-10-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 VI35_12850 732c5179d95d9f6e4ee16c335ff0ae38 270 Hamap MF_01062 Phosphoenolpyruvate synthase regulatory protein [ppsR]. 1 269 74.829 T 17-10-2018 IPR026530 Phosphoenolpyruvate synthase regulatory protein VI35_19975 5d79eab4df53064e6524a58c14884e3b 216 Pfam PF13599 Pentapeptide repeats (9 copies) 98 164 5.5E-9 T 17-10-2018 IPR001646 Pentapeptide repeat VI35_19975 5d79eab4df53064e6524a58c14884e3b 216 Gene3D G3DSA:2.160.20.80 1 216 1.2E-82 T 17-10-2018 VI35_19975 5d79eab4df53064e6524a58c14884e3b 216 Pfam PF00805 Pentapeptide repeats (8 copies) 56 80 1.7E-4 T 17-10-2018 IPR001646 Pentapeptide repeat VI35_19975 5d79eab4df53064e6524a58c14884e3b 216 Pfam PF00805 Pentapeptide repeats (8 copies) 172 198 1.8E-5 T 17-10-2018 IPR001646 Pentapeptide repeat VI35_19975 5d79eab4df53064e6524a58c14884e3b 216 SUPERFAMILY SSF141571 13 198 6.12E-35 T 17-10-2018 VI35_08280 5dbbfed8c0516893e1c35c8f9e191f7a 266 Pfam PF01841 Transglutaminase-like superfamily 126 214 4.9E-22 T 17-10-2018 IPR002931 Transglutaminase-like VI35_08280 5dbbfed8c0516893e1c35c8f9e191f7a 266 Gene3D G3DSA:3.10.620.30 70 252 5.8E-45 T 17-10-2018 VI35_08280 5dbbfed8c0516893e1c35c8f9e191f7a 266 SUPERFAMILY SSF54001 95 242 5.3E-38 T 17-10-2018 IPR038765 Papain-like cysteine peptidase superfamily VI35_08280 5dbbfed8c0516893e1c35c8f9e191f7a 266 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 4 79 3.5E-19 T 17-10-2018 IPR013589 Bacterial transglutaminase-like, N-terminal VI35_08280 5dbbfed8c0516893e1c35c8f9e191f7a 266 SMART SM00460 155 217 7.3E-18 T 17-10-2018 IPR002931 Transglutaminase-like VI35_01025 c960191337b92e1d769519587ecc6f82 189 Gene3D G3DSA:3.30.1360.40 109 189 3.0E-22 T 17-10-2018 VI35_01025 c960191337b92e1d769519587ecc6f82 189 Pfam PF01316 Arginine repressor, DNA binding domain 47 106 3.6E-14 T 17-10-2018 IPR020900 Arginine repressor, DNA-binding domain GO:0003700|GO:0006355|GO:0006525 VI35_01025 c960191337b92e1d769519587ecc6f82 189 SUPERFAMILY SSF55252 116 180 9.68E-15 T 17-10-2018 IPR036251 Arginine repressor, C-terminal domain superfamily GO:0034618|GO:0051259 VI35_01025 c960191337b92e1d769519587ecc6f82 189 Pfam PF02863 Arginine repressor, C-terminal domain 117 175 5.1E-16 T 17-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 VI35_01025 c960191337b92e1d769519587ecc6f82 189 ProDom PD007402 ARGININE REPRESSOR TRANSCRIPTION BIOSYNTHESIS DNA-BINDING REGULATION AMINO-ACID ARGR TRANSCRIPTIONAL FAMILY 123 186 1.0E-7 T 17-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 VI35_01025 c960191337b92e1d769519587ecc6f82 189 PRINTS PR01467 Bacterial arginine repressor signature 58 71 2.2E-15 T 17-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 VI35_01025 c960191337b92e1d769519587ecc6f82 189 PRINTS PR01467 Bacterial arginine repressor signature 124 137 2.2E-15 T 17-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 VI35_01025 c960191337b92e1d769519587ecc6f82 189 PRINTS PR01467 Bacterial arginine repressor signature 75 90 2.2E-15 T 17-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 VI35_01025 c960191337b92e1d769519587ecc6f82 189 PRINTS PR01467 Bacterial arginine repressor signature 154 169 2.2E-15 T 17-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 VI35_01025 c960191337b92e1d769519587ecc6f82 189 Hamap MF_00173 Arginine repressor [argR]. 42 188 36.618 T 17-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 VI35_01025 c960191337b92e1d769519587ecc6f82 189 Gene3D G3DSA:1.10.10.10 35 108 5.1E-24 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_01025 c960191337b92e1d769519587ecc6f82 189 SUPERFAMILY SSF46785 42 106 1.54E-16 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_04700 62b08c940f0896c9ac72f30ec42c1dce 149 Gene3D G3DSA:3.40.50.9100 1 149 1.5E-67 T 17-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 VI35_04700 62b08c940f0896c9ac72f30ec42c1dce 149 SUPERFAMILY SSF52304 3 145 1.26E-62 T 17-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 VI35_04700 62b08c940f0896c9ac72f30ec42c1dce 149 ProSitePatterns PS01029 Dehydroquinase class II signature. 10 27 - T 17-10-2018 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 VI35_04700 62b08c940f0896c9ac72f30ec42c1dce 149 PIRSF PIRSF001399 3 149 1.2E-60 T 17-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 VI35_04700 62b08c940f0896c9ac72f30ec42c1dce 149 Pfam PF01220 Dehydroquinase class II 6 142 2.9E-62 T 17-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 VI35_04700 62b08c940f0896c9ac72f30ec42c1dce 149 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 20 145 4.0E-64 T 17-10-2018 VI35_04700 62b08c940f0896c9ac72f30ec42c1dce 149 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 149 75.462 T 17-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 VI35_04700 62b08c940f0896c9ac72f30ec42c1dce 149 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 6 145 3.8E-64 T 17-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 VI35_17955 a16d7b8f8d8427de117692ca88284e34 459 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 429 2.1E-180 T 17-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 VI35_17955 a16d7b8f8d8427de117692ca88284e34 459 SUPERFAMILY SSF47446 298 431 1.2E-45 T 17-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 VI35_17955 a16d7b8f8d8427de117692ca88284e34 459 Gene3D G3DSA:3.40.50.300 90 285 6.8E-125 T 17-10-2018 VI35_17955 a16d7b8f8d8427de117692ca88284e34 459 SMART SM00963 1 86 9.2E-38 T 17-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VI35_17955 a16d7b8f8d8427de117692ca88284e34 459 SMART SM00382 99 247 6.5E-11 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_17955 a16d7b8f8d8427de117692ca88284e34 459 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 440 34.493 T 17-10-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 VI35_17955 a16d7b8f8d8427de117692ca88284e34 459 Pfam PF02978 Signal peptide binding domain 329 427 6.2E-33 T 17-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 VI35_17955 a16d7b8f8d8427de117692ca88284e34 459 Gene3D G3DSA:1.10.260.30 328 451 2.1E-43 T 17-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 VI35_17955 a16d7b8f8d8427de117692ca88284e34 459 SMART SM00962 100 296 4.0E-116 T 17-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VI35_17955 a16d7b8f8d8427de117692ca88284e34 459 Pfam PF00448 SRP54-type protein, GTPase domain 101 296 1.7E-75 T 17-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VI35_17955 a16d7b8f8d8427de117692ca88284e34 459 SUPERFAMILY SSF52540 42 352 1.96E-59 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_17955 a16d7b8f8d8427de117692ca88284e34 459 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 5.3E-22 T 17-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VI35_17955 a16d7b8f8d8427de117692ca88284e34 459 Gene3D G3DSA:1.20.120.140 4 305 6.8E-125 T 17-10-2018 VI35_17955 a16d7b8f8d8427de117692ca88284e34 459 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 17-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VI35_04505 396e24d02871e784f371ef65e75ae866 363 SUPERFAMILY SSF53613 61 358 3.27E-57 T 17-10-2018 IPR029056 Ribokinase-like VI35_04505 396e24d02871e784f371ef65e75ae866 363 SUPERFAMILY SSF46785 1 55 2.41E-10 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_04505 396e24d02871e784f371ef65e75ae866 363 Gene3D G3DSA:3.40.1190.20 56 361 1.5E-74 T 17-10-2018 IPR029056 Ribokinase-like VI35_04505 396e24d02871e784f371ef65e75ae866 363 Gene3D G3DSA:1.10.10.10 2 55 4.1E-10 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_04505 396e24d02871e784f371ef65e75ae866 363 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 302 315 - T 17-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 VI35_04505 396e24d02871e784f371ef65e75ae866 363 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 6.7E-5 T 17-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VI35_04505 396e24d02871e784f371ef65e75ae866 363 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 6.7E-5 T 17-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VI35_04505 396e24d02871e784f371ef65e75ae866 363 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 6.7E-5 T 17-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VI35_04505 396e24d02871e784f371ef65e75ae866 363 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 93 117 - T 17-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 VI35_04505 396e24d02871e784f371ef65e75ae866 363 Pfam PF13412 Winged helix-turn-helix DNA-binding 2 48 1.9E-11 T 17-10-2018 VI35_04505 396e24d02871e784f371ef65e75ae866 363 Pfam PF00294 pfkB family carbohydrate kinase 60 346 8.5E-45 T 17-10-2018 IPR011611 Carbohydrate kinase PfkB VI35_03395 16cb9c685cd548d3de7d2fe5b3c577c2 327 Pfam PF04539 Sigma-70 region 3 170 243 3.4E-19 T 17-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 VI35_03395 16cb9c685cd548d3de7d2fe5b3c577c2 327 Gene3D G3DSA:1.10.601.10 78 162 8.0E-47 T 17-10-2018 VI35_03395 16cb9c685cd548d3de7d2fe5b3c577c2 327 TIGRFAM TIGR02394 rpoS_proteo: RNA polymerase sigma factor RpoS 47 324 1.4E-139 T 17-10-2018 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VI35_03395 16cb9c685cd548d3de7d2fe5b3c577c2 327 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 283 309 - T 17-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VI35_03395 16cb9c685cd548d3de7d2fe5b3c577c2 327 PRINTS PR00046 Major sigma-70 factor signature 138 146 3.4E-27 T 17-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VI35_03395 16cb9c685cd548d3de7d2fe5b3c577c2 327 PRINTS PR00046 Major sigma-70 factor signature 283 298 3.4E-27 T 17-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VI35_03395 16cb9c685cd548d3de7d2fe5b3c577c2 327 PRINTS PR00046 Major sigma-70 factor signature 114 127 3.4E-27 T 17-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VI35_03395 16cb9c685cd548d3de7d2fe5b3c577c2 327 PRINTS PR00046 Major sigma-70 factor signature 262 274 3.4E-27 T 17-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VI35_03395 16cb9c685cd548d3de7d2fe5b3c577c2 327 PRINTS PR00046 Major sigma-70 factor signature 298 309 3.4E-27 T 17-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VI35_03395 16cb9c685cd548d3de7d2fe5b3c577c2 327 Gene3D G3DSA:1.10.10.10 245 320 2.7E-20 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_03395 16cb9c685cd548d3de7d2fe5b3c577c2 327 Pfam PF00140 Sigma-70 factor, region 1.2 52 85 1.2E-12 T 17-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VI35_03395 16cb9c685cd548d3de7d2fe5b3c577c2 327 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 114 127 - T 17-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VI35_03395 16cb9c685cd548d3de7d2fe5b3c577c2 327 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 86 313 2.0E-35 T 17-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 VI35_03395 16cb9c685cd548d3de7d2fe5b3c577c2 327 SUPERFAMILY SSF88659 163 237 8.28E-15 T 17-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VI35_03395 16cb9c685cd548d3de7d2fe5b3c577c2 327 SUPERFAMILY SSF88659 220 318 2.43E-23 T 17-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VI35_03395 16cb9c685cd548d3de7d2fe5b3c577c2 327 Hamap MF_00959 RNA polymerase sigma factor RpoS [rpoS]. 8 324 39.684 T 17-10-2018 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VI35_03395 16cb9c685cd548d3de7d2fe5b3c577c2 327 Pfam PF04545 Sigma-70, region 4 258 311 1.0E-17 T 17-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 VI35_03395 16cb9c685cd548d3de7d2fe5b3c577c2 327 Pfam PF04542 Sigma-70 region 2 90 159 1.4E-20 T 17-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 VI35_03395 16cb9c685cd548d3de7d2fe5b3c577c2 327 Gene3D G3DSA:1.10.10.10 163 238 4.7E-19 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_03395 16cb9c685cd548d3de7d2fe5b3c577c2 327 SUPERFAMILY SSF88946 52 160 9.03E-46 T 17-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 VI35_06840 9029a99109cb7a22bed8d65a6e1cb437 196 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 18 190 4.4E-76 T 17-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal VI35_06840 9029a99109cb7a22bed8d65a6e1cb437 196 Gene3D G3DSA:1.10.3820.10 13 192 8.8E-37 T 17-10-2018 IPR038266 NapC/NirT cytochrome c superfamily VI35_06840 9029a99109cb7a22bed8d65a6e1cb437 196 SUPERFAMILY SSF48695 14 193 8.39E-60 T 17-10-2018 IPR036280 Multiheme cytochrome superfamily VI35_06840 9029a99109cb7a22bed8d65a6e1cb437 196 TIGRFAM TIGR02161 napC_nirT: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family 7 191 1.5E-97 T 17-10-2018 IPR011885 Periplasmic nitrate reductase c-type cytochrome, NapC/NirT GO:0016021|GO:0019333|GO:0020037 VI35_06840 9029a99109cb7a22bed8d65a6e1cb437 196 PIRSF PIRSF000013 1 196 3.9E-100 T 17-10-2018 IPR024717 Denitrification system component NapC/NirT/NrfH GO:0016021|GO:0019333|GO:0020037 VI35_10845 25b9bb140be24227ccc2a2769f19dad8 342 SUPERFAMILY SSF47823 28 146 6.67E-22 T 17-10-2018 VI35_10845 25b9bb140be24227ccc2a2769f19dad8 342 Gene3D G3DSA:1.10.150.130 22 146 2.4E-20 T 17-10-2018 IPR010998 Integrase/recombinase, N-terminal VI35_10845 25b9bb140be24227ccc2a2769f19dad8 342 Gene3D G3DSA:1.10.443.10 148 331 1.7E-39 T 17-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VI35_10845 25b9bb140be24227ccc2a2769f19dad8 342 Pfam PF00589 Phage integrase family 154 329 1.9E-14 T 17-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VI35_10845 25b9bb140be24227ccc2a2769f19dad8 342 SUPERFAMILY SSF56349 147 337 1.29E-35 T 17-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VI35_02940 e36d24ff0185d313547631c2bab6477f 107 Pfam PF01340 Met Apo-repressor, MetJ 4 98 4.5E-56 T 17-10-2018 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 VI35_02940 e36d24ff0185d313547631c2bab6477f 107 SUPERFAMILY SSF47598 4 104 2.09E-54 T 17-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 VI35_02940 e36d24ff0185d313547631c2bab6477f 107 ProDom PD020365 REPRESSOR MET BIOSYNTHESIS TRANSCRIPTION METJ METHIONINE REGULON DNA-BINDING REGULATORY AMINO-ACID 11 102 6.0E-42 T 17-10-2018 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 VI35_02940 e36d24ff0185d313547631c2bab6477f 107 Gene3D G3DSA:1.10.140.10 3 106 8.3E-53 T 17-10-2018 IPR023453 Methionine repressor MetJ domain superfamily VI35_00365 27644e3a9e3d308b46901abdea39e00f 857 Pfam PF13549 ATP-grasp domain 447 666 1.0E-65 T 17-10-2018 VI35_00365 27644e3a9e3d308b46901abdea39e00f 857 SMART SM00881 9 104 5.2E-26 T 17-10-2018 IPR003781 CoA-binding GO:0048037 VI35_00365 27644e3a9e3d308b46901abdea39e00f 857 SUPERFAMILY SSF56059 456 666 6.85E-22 T 17-10-2018 VI35_00365 27644e3a9e3d308b46901abdea39e00f 857 Gene3D G3DSA:3.40.630.30 689 856 1.5E-42 T 17-10-2018 VI35_00365 27644e3a9e3d308b46901abdea39e00f 857 SUPERFAMILY SSF55729 696 840 6.45E-21 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_00365 27644e3a9e3d308b46901abdea39e00f 857 Gene3D G3DSA:3.40.50.261 311 430 7.9E-25 T 17-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 VI35_00365 27644e3a9e3d308b46901abdea39e00f 857 Gene3D G3DSA:3.30.1490.20 474 551 3.5E-53 T 17-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 VI35_00365 27644e3a9e3d308b46901abdea39e00f 857 Pfam PF13380 CoA binding domain 14 132 3.3E-21 T 17-10-2018 IPR003781 CoA-binding GO:0048037 VI35_00365 27644e3a9e3d308b46901abdea39e00f 857 SUPERFAMILY SSF52210 129 276 4.19E-33 T 17-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 VI35_00365 27644e3a9e3d308b46901abdea39e00f 857 Gene3D G3DSA:3.40.50.261 128 278 6.0E-41 T 17-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 VI35_00365 27644e3a9e3d308b46901abdea39e00f 857 Pfam PF13302 Acetyltransferase (GNAT) domain 697 836 3.9E-9 T 17-10-2018 IPR000182 GNAT domain VI35_00365 27644e3a9e3d308b46901abdea39e00f 857 SUPERFAMILY SSF52210 266 414 5.76E-29 T 17-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 VI35_00365 27644e3a9e3d308b46901abdea39e00f 857 SUPERFAMILY SSF51735 3 137 1.62E-32 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_00365 27644e3a9e3d308b46901abdea39e00f 857 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 149 275 9.7E-40 T 17-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain VI35_00365 27644e3a9e3d308b46901abdea39e00f 857 Gene3D G3DSA:3.40.50.720 4 127 1.6E-34 T 17-10-2018 VI35_00365 27644e3a9e3d308b46901abdea39e00f 857 Gene3D G3DSA:3.30.470.20 454 663 3.5E-53 T 17-10-2018 VI35_01875 9d6106070468617f3f7f59802ce56d48 216 Pfam PF14187 Domain of unknown function (DUF4310) 7 213 9.5E-105 T 17-10-2018 IPR025456 Protein of unknown function DUF4310 VI35_01875 9d6106070468617f3f7f59802ce56d48 216 TIGRFAM TIGR03579 EF_0833: conserved hypothetical protein EF_0833/AHA_3914 7 215 7.5E-123 T 17-10-2018 IPR025456 Protein of unknown function DUF4310 VI35_13330 cf5c3a67d163cebd54f2b1810f9d4be7 214 Pfam PF00072 Response regulator receiver domain 4 116 3.0E-31 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_13330 cf5c3a67d163cebd54f2b1810f9d4be7 214 SUPERFAMILY SSF46894 135 210 6.46E-19 T 17-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VI35_13330 cf5c3a67d163cebd54f2b1810f9d4be7 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 147 203 2.5E-19 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_13330 cf5c3a67d163cebd54f2b1810f9d4be7 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 1.1E-10 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_13330 cf5c3a67d163cebd54f2b1810f9d4be7 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 1.1E-10 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_13330 cf5c3a67d163cebd54f2b1810f9d4be7 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 1.1E-10 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_13330 cf5c3a67d163cebd54f2b1810f9d4be7 214 SMART SM00421 146 203 2.4E-17 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_13330 cf5c3a67d163cebd54f2b1810f9d4be7 214 SMART SM00448 2 115 2.2E-31 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_13330 cf5c3a67d163cebd54f2b1810f9d4be7 214 Gene3D G3DSA:3.40.50.12740 2 209 3.4E-62 T 17-10-2018 VI35_13330 cf5c3a67d163cebd54f2b1810f9d4be7 214 SUPERFAMILY SSF52172 2 132 5.12E-36 T 17-10-2018 IPR011006 CheY-like superfamily VI35_13330 cf5c3a67d163cebd54f2b1810f9d4be7 214 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_20030 68d1127b0a6aa9f6a4e92a5b9fa2b074 302 SUPERFAMILY SSF55729 2 147 6.81E-31 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_20030 68d1127b0a6aa9f6a4e92a5b9fa2b074 302 Pfam PF09500 Putative thioesterase (yiiD_Cterm) 156 295 1.4E-48 T 17-10-2018 IPR012660 Thioesterase, putative VI35_20030 68d1127b0a6aa9f6a4e92a5b9fa2b074 302 SUPERFAMILY SSF54637 153 295 6.53E-36 T 17-10-2018 IPR029069 HotDog domain superfamily VI35_20030 68d1127b0a6aa9f6a4e92a5b9fa2b074 302 TIGRFAM TIGR02447 yiiD_Cterm: putative thioesterase domain 163 296 3.5E-42 T 17-10-2018 IPR012660 Thioesterase, putative VI35_20030 68d1127b0a6aa9f6a4e92a5b9fa2b074 302 Gene3D G3DSA:3.40.630.30 3 142 5.2E-29 T 17-10-2018 VI35_20030 68d1127b0a6aa9f6a4e92a5b9fa2b074 302 Pfam PF00583 Acetyltransferase (GNAT) family 35 121 6.3E-14 T 17-10-2018 IPR000182 GNAT domain VI35_20030 68d1127b0a6aa9f6a4e92a5b9fa2b074 302 Gene3D G3DSA:3.10.129.10 146 297 5.3E-43 T 17-10-2018 VI35_11645 eb7a4667b1f20da5aa292a30aef1c94a 423 Hamap MF_01232 UPF0229 protein YeaH [yeaH]. 1 423 40.014 T 17-10-2018 IPR006698 Uncharacterised protein family UPF0229 VI35_11645 eb7a4667b1f20da5aa292a30aef1c94a 423 Pfam PF04285 Protein of unknown function (DUF444) 3 421 5.3E-189 T 17-10-2018 IPR006698 Uncharacterised protein family UPF0229 VI35_09340 a996071e16989e3d7e050b1e147a41a6 232 Gene3D G3DSA:3.40.225.10 3 229 8.8E-62 T 17-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily VI35_09340 a996071e16989e3d7e050b1e147a41a6 232 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 9 195 1.7E-48 T 17-10-2018 IPR001303 Class II aldolase/adducin N-terminal VI35_09340 a996071e16989e3d7e050b1e147a41a6 232 SUPERFAMILY SSF53639 4 221 5.1E-70 T 17-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily VI35_09340 a996071e16989e3d7e050b1e147a41a6 232 SMART SM01007 8 196 2.5E-72 T 17-10-2018 IPR001303 Class II aldolase/adducin N-terminal VI35_21125 2961313ae9239781e86e9b42fe50575e 513 SUPERFAMILY SSF52540 96 381 1.75E-95 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_21125 2961313ae9239781e86e9b42fe50575e 513 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 512 49.966 T 17-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21125 2961313ae9239781e86e9b42fe50575e 513 SUPERFAMILY SSF50615 10 94 1.0E-25 T 17-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VI35_21125 2961313ae9239781e86e9b42fe50575e 513 Gene3D G3DSA:2.40.30.20 1 93 1.7E-29 T 17-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VI35_21125 2961313ae9239781e86e9b42fe50575e 513 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 28 92 1.6E-13 T 17-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VI35_21125 2961313ae9239781e86e9b42fe50575e 513 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 366 375 - T 17-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VI35_21125 2961313ae9239781e86e9b42fe50575e 513 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 2 512 9.2E-255 T 17-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21125 2961313ae9239781e86e9b42fe50575e 513 SUPERFAMILY SSF47917 383 511 1.33E-44 T 17-10-2018 VI35_21125 2961313ae9239781e86e9b42fe50575e 513 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 375 3.4E-74 T 17-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VI35_21125 2961313ae9239781e86e9b42fe50575e 513 Gene3D G3DSA:1.20.150.20 383 513 1.1E-47 T 17-10-2018 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21125 2961313ae9239781e86e9b42fe50575e 513 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 382 507 2.1E-44 T 17-10-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21125 2961313ae9239781e86e9b42fe50575e 513 Gene3D G3DSA:3.40.50.300 94 382 1.5E-132 T 17-10-2018 VI35_06735 db3675b2b219dc8dae75837d4d47caa8 244 SMART SM00479 8 185 1.2E-52 T 17-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VI35_06735 db3675b2b219dc8dae75837d4d47caa8 244 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 8 244 1.9E-94 T 17-10-2018 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_06735 db3675b2b219dc8dae75837d4d47caa8 244 Gene3D G3DSA:3.20.20.140 211 244 1.4E-5 T 17-10-2018 VI35_06735 db3675b2b219dc8dae75837d4d47caa8 244 Pfam PF00929 Exonuclease 10 176 3.6E-38 T 17-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VI35_06735 db3675b2b219dc8dae75837d4d47caa8 244 Gene3D G3DSA:3.30.420.10 4 191 1.3E-56 T 17-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VI35_06735 db3675b2b219dc8dae75837d4d47caa8 244 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 7 204 2.8E-79 T 17-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_06735 db3675b2b219dc8dae75837d4d47caa8 244 SUPERFAMILY SSF53098 8 186 2.02E-55 T 17-10-2018 IPR012337 Ribonuclease H-like superfamily VI35_05760 c60b87e7105aedf2f88d868d88240557 379 SUPERFAMILY SSF53383 1 375 8.16E-89 T 17-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VI35_05760 c60b87e7105aedf2f88d868d88240557 379 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 4 375 5.0E-132 T 17-10-2018 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 VI35_05760 c60b87e7105aedf2f88d868d88240557 379 Gene3D G3DSA:3.40.640.10 63 285 6.4E-130 T 17-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VI35_05760 c60b87e7105aedf2f88d868d88240557 379 Pfam PF00155 Aminotransferase class I and II 39 370 8.6E-30 T 17-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 VI35_05760 c60b87e7105aedf2f88d868d88240557 379 Gene3D G3DSA:3.90.1150.10 12 371 6.4E-130 T 17-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VI35_02180 93d5812d25556915de32b55172bdb402 285 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 205 222 - T 17-10-2018 IPR000540 Flagellar motor protein MotA, conserved site VI35_02180 93d5812d25556915de32b55172bdb402 285 TIGRFAM TIGR03818 MotA1: flagellar motor stator protein MotA 1 281 2.3E-115 T 17-10-2018 IPR022522 Flagellar motor stator, MotA VI35_02180 93d5812d25556915de32b55172bdb402 285 Pfam PF01618 MotA/TolQ/ExbB proton channel family 138 235 7.5E-13 T 17-10-2018 IPR002898 MotA/TolQ/ExbB proton channel VI35_20055 502662117da3ea3cf31d9c0b5d31aa00 469 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 14 95 7.6E-32 T 17-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 VI35_20055 502662117da3ea3cf31d9c0b5d31aa00 469 SMART SM01230 102 379 1.1E-146 T 17-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 VI35_20055 502662117da3ea3cf31d9c0b5d31aa00 469 Pfam PF00120 Glutamine synthetase, catalytic domain 103 466 2.5E-136 T 17-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 VI35_20055 502662117da3ea3cf31d9c0b5d31aa00 469 SUPERFAMILY SSF54368 3 100 7.46E-37 T 17-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 VI35_20055 502662117da3ea3cf31d9c0b5d31aa00 469 SUPERFAMILY SSF55931 102 468 1.37E-136 T 17-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 VI35_20055 502662117da3ea3cf31d9c0b5d31aa00 469 Gene3D G3DSA:3.10.20.70 2 104 1.8E-40 T 17-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 VI35_20055 502662117da3ea3cf31d9c0b5d31aa00 469 ProSitePatterns PS00180 Glutamine synthetase signature 1. 50 68 - T 17-10-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 VI35_20055 502662117da3ea3cf31d9c0b5d31aa00 469 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 386 398 - T 17-10-2018 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 VI35_20055 502662117da3ea3cf31d9c0b5d31aa00 469 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 259 274 - T 17-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 VI35_20055 502662117da3ea3cf31d9c0b5d31aa00 469 Gene3D G3DSA:3.30.590.10 105 457 9.6E-147 T 17-10-2018 VI35_20055 502662117da3ea3cf31d9c0b5d31aa00 469 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 5 468 3.2E-207 T 17-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 VI35_04350 939b5a824625f89e6d20416b7086f485 211 Gene3D G3DSA:3.30.1150.10 115 209 4.4E-19 T 17-10-2018 VI35_04350 939b5a824625f89e6d20416b7086f485 211 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 135 209 3.5E-16 T 17-10-2018 IPR037682 TonB, C-terminal GO:0055085 VI35_04350 939b5a824625f89e6d20416b7086f485 211 SUPERFAMILY SSF74653 125 208 9.81E-16 T 17-10-2018 VI35_04350 939b5a824625f89e6d20416b7086f485 211 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 143 209 7.2E-12 T 17-10-2018 IPR006260 TonB/TolA, C-terminal VI35_06980 f8f7ca9b98b36c966d14521f222a53d4 694 Pfam PF03707 Bacterial signalling protein N terminal repeat 115 170 9.9E-16 T 17-10-2018 IPR005330 MHYT domain VI35_06980 f8f7ca9b98b36c966d14521f222a53d4 694 Pfam PF03707 Bacterial signalling protein N terminal repeat 52 108 4.4E-21 T 17-10-2018 IPR005330 MHYT domain VI35_06980 f8f7ca9b98b36c966d14521f222a53d4 694 Pfam PF03707 Bacterial signalling protein N terminal repeat 182 239 1.5E-10 T 17-10-2018 IPR005330 MHYT domain VI35_06980 f8f7ca9b98b36c966d14521f222a53d4 694 Pfam PF00990 Diguanylate cyclase, GGDEF domain 259 414 3.7E-47 T 17-10-2018 IPR000160 GGDEF domain VI35_06980 f8f7ca9b98b36c966d14521f222a53d4 694 Gene3D G3DSA:3.20.20.450 433 680 3.5E-100 T 17-10-2018 IPR035919 EAL domain superfamily VI35_06980 f8f7ca9b98b36c966d14521f222a53d4 694 Gene3D G3DSA:3.30.70.270 254 432 3.8E-60 T 17-10-2018 VI35_06980 f8f7ca9b98b36c966d14521f222a53d4 694 SMART SM00267 248 419 2.7E-61 T 17-10-2018 IPR000160 GGDEF domain VI35_06980 f8f7ca9b98b36c966d14521f222a53d4 694 SUPERFAMILY SSF141868 435 680 1.31E-87 T 17-10-2018 IPR035919 EAL domain superfamily VI35_06980 f8f7ca9b98b36c966d14521f222a53d4 694 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 257 419 3.2E-43 T 17-10-2018 IPR000160 GGDEF domain VI35_06980 f8f7ca9b98b36c966d14521f222a53d4 694 SMART SM00052 429 675 4.9E-121 T 17-10-2018 IPR001633 EAL domain VI35_06980 f8f7ca9b98b36c966d14521f222a53d4 694 SUPERFAMILY SSF55073 264 421 2.04E-51 T 17-10-2018 IPR029787 Nucleotide cyclase VI35_06980 f8f7ca9b98b36c966d14521f222a53d4 694 Pfam PF00563 EAL domain 435 670 9.7E-75 T 17-10-2018 IPR001633 EAL domain VI35_10015 2760c37c3d5fbecb699b167877599756 382 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 230 377 1.6E-44 T 17-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 VI35_10015 2760c37c3d5fbecb699b167877599756 382 Gene3D G3DSA:2.40.110.10 121 233 1.2E-46 T 17-10-2018 VI35_10015 2760c37c3d5fbecb699b167877599756 382 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 336 355 - T 17-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 VI35_10015 2760c37c3d5fbecb699b167877599756 382 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 217 4.1E-27 T 17-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 VI35_10015 2760c37c3d5fbecb699b167877599756 382 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 124 136 - T 17-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 VI35_10015 2760c37c3d5fbecb699b167877599756 382 SUPERFAMILY SSF56645 3 242 3.01E-86 T 17-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 VI35_10015 2760c37c3d5fbecb699b167877599756 382 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 118 8.9E-34 T 17-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 VI35_10015 2760c37c3d5fbecb699b167877599756 382 Gene3D G3DSA:1.20.140.10 234 379 4.0E-50 T 17-10-2018 VI35_10015 2760c37c3d5fbecb699b167877599756 382 Gene3D G3DSA:1.10.540.10 1 120 9.6E-42 T 17-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 VI35_10015 2760c37c3d5fbecb699b167877599756 382 PIRSF PIRSF016578 130 382 8.0E-12 T 17-10-2018 VI35_10015 2760c37c3d5fbecb699b167877599756 382 PIRSF PIRSF016578 2 94 0.035 T 17-10-2018 VI35_10015 2760c37c3d5fbecb699b167877599756 382 SUPERFAMILY SSF47203 228 379 5.15E-50 T 17-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 VI35_03295 3fd7460bb3243d4fbefc581eb94fec01 223 Gene3D G3DSA:3.30.160.20 153 223 1.8E-19 T 17-10-2018 VI35_03295 3fd7460bb3243d4fbefc581eb94fec01 223 SUPERFAMILY SSF69065 3 158 1.66E-49 T 17-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 VI35_03295 3fd7460bb3243d4fbefc581eb94fec01 223 Hamap MF_00104 Ribonuclease 3 [rnc]. 8 219 29.556 T 17-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 VI35_03295 3fd7460bb3243d4fbefc581eb94fec01 223 ProSitePatterns PS00517 Ribonuclease III family signature. 37 45 - T 17-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 VI35_03295 3fd7460bb3243d4fbefc581eb94fec01 223 SMART SM00358 155 223 4.9E-21 T 17-10-2018 IPR014720 Double-stranded RNA-binding domain VI35_03295 3fd7460bb3243d4fbefc581eb94fec01 223 Gene3D G3DSA:1.10.1520.10 4 140 1.7E-42 T 17-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 VI35_03295 3fd7460bb3243d4fbefc581eb94fec01 223 SMART SM00535 20 148 1.6E-55 T 17-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 VI35_03295 3fd7460bb3243d4fbefc581eb94fec01 223 Pfam PF14622 Ribonuclease-III-like 18 139 3.5E-33 T 17-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 VI35_03295 3fd7460bb3243d4fbefc581eb94fec01 223 Pfam PF00035 Double-stranded RNA binding motif 155 222 6.5E-14 T 17-10-2018 IPR014720 Double-stranded RNA-binding domain VI35_03295 3fd7460bb3243d4fbefc581eb94fec01 223 SUPERFAMILY SSF54768 108 222 4.13E-26 T 17-10-2018 VI35_03295 3fd7460bb3243d4fbefc581eb94fec01 223 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 8 222 3.4E-73 T 17-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 VI35_18810 d96c9374367241810f77b966c02322dd 328 SUPERFAMILY SSF143865 15 260 2.35E-50 T 17-10-2018 VI35_18810 d96c9374367241810f77b966c02322dd 328 SUPERFAMILY SSF144083 264 325 5.1E-14 T 17-10-2018 VI35_18810 d96c9374367241810f77b966c02322dd 328 Pfam PF01544 CorA-like Mg2+ transporter protein 42 323 5.1E-60 T 17-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 VI35_18810 d96c9374367241810f77b966c02322dd 328 Gene3D G3DSA:1.20.58.340 142 263 2.8E-37 T 17-10-2018 VI35_18810 d96c9374367241810f77b966c02322dd 328 Gene3D G3DSA:1.20.58.340 271 328 1.7E-11 T 17-10-2018 VI35_18810 d96c9374367241810f77b966c02322dd 328 Gene3D G3DSA:3.30.460.20 7 140 2.7E-36 T 17-10-2018 VI35_12465 643be66b9c3e7325069f757568a62ff3 365 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 3 360 6.8E-148 T 17-10-2018 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 VI35_12465 643be66b9c3e7325069f757568a62ff3 365 Pfam PF01571 Aminomethyltransferase folate-binding domain 7 253 3.8E-84 T 17-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain VI35_12465 643be66b9c3e7325069f757568a62ff3 365 Gene3D G3DSA:3.30.70.1400 51 138 8.9E-85 T 17-10-2018 VI35_12465 643be66b9c3e7325069f757568a62ff3 365 Gene3D G3DSA:4.10.1250.10 232 275 1.4E-25 T 17-10-2018 VI35_12465 643be66b9c3e7325069f757568a62ff3 365 Gene3D G3DSA:3.30.1360.120 7 231 8.9E-85 T 17-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 VI35_12465 643be66b9c3e7325069f757568a62ff3 365 PIRSF PIRSF006487 1 363 9.0E-83 T 17-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 VI35_12465 643be66b9c3e7325069f757568a62ff3 365 SUPERFAMILY SSF103025 3 277 1.46E-88 T 17-10-2018 VI35_12465 643be66b9c3e7325069f757568a62ff3 365 SUPERFAMILY SSF101790 270 361 3.6E-26 T 17-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal VI35_12465 643be66b9c3e7325069f757568a62ff3 365 Hamap MF_00259 Aminomethyltransferase [gcvT]. 1 360 43.289 T 17-10-2018 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 VI35_12465 643be66b9c3e7325069f757568a62ff3 365 Gene3D G3DSA:2.40.30.110 278 365 1.5E-33 T 17-10-2018 VI35_12465 643be66b9c3e7325069f757568a62ff3 365 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 263 354 9.6E-20 T 17-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 VI35_02880 5f5e6c02815427394b82f903a3100284 163 SUPERFAMILY SSF103054 84 161 1.14E-20 T 17-10-2018 IPR023229 Type II secretion system protein M, periplasmic domain superfamily VI35_02880 5f5e6c02815427394b82f903a3100284 163 PIRSF PIRSF006291 1 162 3.7E-46 T 17-10-2018 IPR007690 Type II secretion system, protein M GO:0009306 VI35_02880 5f5e6c02815427394b82f903a3100284 163 Pfam PF04612 Type II secretion system (T2SS), protein M 2 161 5.4E-50 T 17-10-2018 IPR007690 Type II secretion system, protein M GO:0009306 VI35_02880 5f5e6c02815427394b82f903a3100284 163 Gene3D G3DSA:3.30.1360.100 84 163 4.2E-26 T 17-10-2018 VI35_01630 71ad3a50d4d0a83a582c956de571dd82 664 SMART SM00283 402 663 4.6E-64 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_01630 71ad3a50d4d0a83a582c956de571dd82 664 Gene3D G3DSA:1.10.287.950 333 664 4.3E-61 T 17-10-2018 VI35_01630 71ad3a50d4d0a83a582c956de571dd82 664 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 475 628 2.7E-39 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_01630 71ad3a50d4d0a83a582c956de571dd82 664 SUPERFAMILY SSF58104 355 664 4.19E-69 T 17-10-2018 VI35_01630 71ad3a50d4d0a83a582c956de571dd82 664 Pfam PF02743 Cache domain 44 295 5.6E-16 T 17-10-2018 IPR033479 Double Cache domain 1 VI35_01630 71ad3a50d4d0a83a582c956de571dd82 664 Gene3D G3DSA:3.30.450.20 38 207 6.0E-16 T 17-10-2018 VI35_13570 4cb2899286d8da86a6a71fa4950efa71 480 SMART SM00382 148 291 3.8E-13 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_13570 4cb2899286d8da86a6a71fa4950efa71 480 Pfam PF00158 Sigma-54 interaction domain 129 290 2.2E-69 T 17-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VI35_13570 4cb2899286d8da86a6a71fa4950efa71 480 Gene3D G3DSA:1.10.8.60 301 383 1.1E-21 T 17-10-2018 VI35_13570 4cb2899286d8da86a6a71fa4950efa71 480 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 214 229 - T 17-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VI35_13570 4cb2899286d8da86a6a71fa4950efa71 480 SUPERFAMILY SSF46689 348 476 1.03E-10 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_13570 4cb2899286d8da86a6a71fa4950efa71 480 Pfam PF02954 Bacterial regulatory protein, Fis family 434 474 1.7E-13 T 17-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VI35_13570 4cb2899286d8da86a6a71fa4950efa71 480 Gene3D G3DSA:1.10.10.60 419 478 5.4E-13 T 17-10-2018 VI35_13570 4cb2899286d8da86a6a71fa4950efa71 480 SUPERFAMILY SSF52540 129 377 1.19E-66 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_13570 4cb2899286d8da86a6a71fa4950efa71 480 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 440 457 2.0E-9 T 17-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VI35_13570 4cb2899286d8da86a6a71fa4950efa71 480 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 457 477 2.0E-9 T 17-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VI35_13570 4cb2899286d8da86a6a71fa4950efa71 480 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 348 357 - T 17-10-2018 IPR025944 Sigma-54 interaction domain, conserved site VI35_13570 4cb2899286d8da86a6a71fa4950efa71 480 Pfam PF06490 Flagellar regulatory protein FleQ 5 107 3.3E-16 T 17-10-2018 IPR010518 Flagellar regulatory FleQ VI35_13570 4cb2899286d8da86a6a71fa4950efa71 480 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 152 165 - T 17-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VI35_13570 4cb2899286d8da86a6a71fa4950efa71 480 Gene3D G3DSA:3.40.50.300 114 295 3.4E-61 T 17-10-2018 VI35_18460 720109c1e9d551731755927f4aa3412f 415 Pfam PF01842 ACT domain 266 322 2.1E-11 T 17-10-2018 IPR002912 ACT domain VI35_18460 720109c1e9d551731755927f4aa3412f 415 SUPERFAMILY SSF55021 247 325 7.01E-17 T 17-10-2018 VI35_18460 720109c1e9d551731755927f4aa3412f 415 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 17-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VI35_18460 720109c1e9d551731755927f4aa3412f 415 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 3 401 4.1E-126 T 17-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VI35_18460 720109c1e9d551731755927f4aa3412f 415 PIRSF PIRSF000726 59 409 1.7E-135 T 17-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VI35_18460 720109c1e9d551731755927f4aa3412f 415 PIRSF PIRSF000726 1 63 7.2E-21 T 17-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VI35_18460 720109c1e9d551731755927f4aa3412f 415 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 3 401 3.3E-132 T 17-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VI35_18460 720109c1e9d551731755927f4aa3412f 415 SUPERFAMILY SSF55021 332 404 9.16E-23 T 17-10-2018 VI35_18460 720109c1e9d551731755927f4aa3412f 415 Gene3D G3DSA:3.30.2130.10 249 412 1.1E-56 T 17-10-2018 VI35_18460 720109c1e9d551731755927f4aa3412f 415 PRINTS PR00474 Glutamate 5-kinase family signature 152 179 6.1E-5 T 17-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 VI35_18460 720109c1e9d551731755927f4aa3412f 415 PRINTS PR00474 Glutamate 5-kinase family signature 33 47 6.1E-5 T 17-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 VI35_18460 720109c1e9d551731755927f4aa3412f 415 Gene3D G3DSA:3.40.1160.10 1 248 2.4E-87 T 17-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VI35_18460 720109c1e9d551731755927f4aa3412f 415 SUPERFAMILY SSF53633 4 241 2.75E-74 T 17-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VI35_18460 720109c1e9d551731755927f4aa3412f 415 Pfam PF00696 Amino acid kinase family 4 229 1.7E-50 T 17-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 VI35_18460 720109c1e9d551731755927f4aa3412f 415 Pfam PF13840 ACT domain 339 398 3.2E-13 T 17-10-2018 IPR027795 CASTOR, ACT domain VI35_10840 2be26f3b26dd2ffc258af90082fafdd3 259 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 191 207 - T 17-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 VI35_10840 2be26f3b26dd2ffc258af90082fafdd3 259 SUPERFAMILY SSF51556 3 256 7.24E-86 T 17-10-2018 IPR032466 Metal-dependent hydrolase VI35_10840 2be26f3b26dd2ffc258af90082fafdd3 259 Pfam PF01026 TatD related DNase 4 255 1.3E-77 T 17-10-2018 IPR001130 TatD family GO:0016788 VI35_10840 2be26f3b26dd2ffc258af90082fafdd3 259 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 126 136 - T 17-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 VI35_10840 2be26f3b26dd2ffc258af90082fafdd3 259 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 3 11 - T 17-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 VI35_10840 2be26f3b26dd2ffc258af90082fafdd3 259 Gene3D G3DSA:3.20.20.140 1 259 5.9E-96 T 17-10-2018 VI35_10840 2be26f3b26dd2ffc258af90082fafdd3 259 PIRSF PIRSF005902 1 259 1.0E-80 T 17-10-2018 IPR001130 TatD family GO:0016788 VI35_10840 2be26f3b26dd2ffc258af90082fafdd3 259 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 3 255 2.6E-89 T 17-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 VI35_11420 3e38de01c830d803b2f1f87c8ecc1e85 295 Gene3D G3DSA:1.10.10.60 187 247 7.3E-17 T 17-10-2018 VI35_11420 3e38de01c830d803b2f1f87c8ecc1e85 295 SUPERFAMILY SSF46689 240 289 8.96E-12 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_11420 3e38de01c830d803b2f1f87c8ecc1e85 295 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 270 286 3.7E-6 T 17-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VI35_11420 3e38de01c830d803b2f1f87c8ecc1e85 295 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 255 270 3.7E-6 T 17-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VI35_11420 3e38de01c830d803b2f1f87c8ecc1e85 295 Gene3D G3DSA:1.10.10.60 248 292 6.0E-14 T 17-10-2018 VI35_11420 3e38de01c830d803b2f1f87c8ecc1e85 295 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 241 282 - T 17-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VI35_11420 3e38de01c830d803b2f1f87c8ecc1e85 295 SMART SM00342 204 286 1.6E-29 T 17-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VI35_11420 3e38de01c830d803b2f1f87c8ecc1e85 295 Pfam PF12833 Helix-turn-helix domain 210 287 2.3E-23 T 17-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VI35_11420 3e38de01c830d803b2f1f87c8ecc1e85 295 SUPERFAMILY SSF46689 189 237 3.67E-11 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_12745 0917c4e2a13b4fb9803be3a1dc26d6e0 348 Gene3D G3DSA:3.40.50.1820 21 330 7.2E-75 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_12745 0917c4e2a13b4fb9803be3a1dc26d6e0 348 SUPERFAMILY SSF53474 21 278 8.46E-48 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_12745 0917c4e2a13b4fb9803be3a1dc26d6e0 348 Pfam PF00756 Putative esterase 32 182 5.2E-19 T 17-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 VI35_14240 b55c113eaf80176dbca14e9b0f09bd4a 564 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 105 468 1.5E-21 T 17-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 VI35_14240 b55c113eaf80176dbca14e9b0f09bd4a 564 SUPERFAMILY SSF53383 100 562 3.58E-63 T 17-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VI35_14240 b55c113eaf80176dbca14e9b0f09bd4a 564 Gene3D G3DSA:3.40.640.10 127 447 1.2E-57 T 17-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VI35_19845 47eb4ce8892defd3f7df4b89f9d1fb84 82 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 5 80 25.419 T 17-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_19845 47eb4ce8892defd3f7df4b89f9d1fb84 82 Pfam PF00366 Ribosomal protein S17 10 76 3.0E-34 T 17-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_19845 47eb4ce8892defd3f7df4b89f9d1fb84 82 PRINTS PR00973 Ribosomal protein S17 family signature 66 73 8.6E-14 T 17-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_19845 47eb4ce8892defd3f7df4b89f9d1fb84 82 PRINTS PR00973 Ribosomal protein S17 family signature 56 66 8.6E-14 T 17-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_19845 47eb4ce8892defd3f7df4b89f9d1fb84 82 PRINTS PR00973 Ribosomal protein S17 family signature 24 47 8.6E-14 T 17-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_19845 47eb4ce8892defd3f7df4b89f9d1fb84 82 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 6 76 2.7E-39 T 17-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_19845 47eb4ce8892defd3f7df4b89f9d1fb84 82 SUPERFAMILY SSF50249 5 82 1.33E-33 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_19845 47eb4ce8892defd3f7df4b89f9d1fb84 82 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 1 76 3.0E-33 T 17-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_19845 47eb4ce8892defd3f7df4b89f9d1fb84 82 Gene3D G3DSA:2.40.50.140 1 82 5.7E-39 T 17-10-2018 VI35_19845 47eb4ce8892defd3f7df4b89f9d1fb84 82 ProSitePatterns PS00056 Ribosomal protein S17 signature. 56 68 - T 17-10-2018 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_10555 7b67f662a46363a1c51f66a6860eb135 441 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 4 424 40.637 T 17-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VI35_10555 7b67f662a46363a1c51f66a6860eb135 441 Pfam PF00815 Histidinol dehydrogenase 25 424 6.9E-166 T 17-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VI35_10555 7b67f662a46363a1c51f66a6860eb135 441 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 33 423 3.1E-160 T 17-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VI35_10555 7b67f662a46363a1c51f66a6860eb135 441 PIRSF PIRSF000099 1 427 1.2E-162 T 17-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VI35_10555 7b67f662a46363a1c51f66a6860eb135 441 Gene3D G3DSA:3.40.50.1980 231 346 8.5E-123 T 17-10-2018 VI35_10555 7b67f662a46363a1c51f66a6860eb135 441 PRINTS PR00083 Histidinol dehydrogenase signature 249 268 1.3E-98 T 17-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VI35_10555 7b67f662a46363a1c51f66a6860eb135 441 PRINTS PR00083 Histidinol dehydrogenase signature 227 248 1.3E-98 T 17-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VI35_10555 7b67f662a46363a1c51f66a6860eb135 441 PRINTS PR00083 Histidinol dehydrogenase signature 33 57 1.3E-98 T 17-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VI35_10555 7b67f662a46363a1c51f66a6860eb135 441 PRINTS PR00083 Histidinol dehydrogenase signature 134 160 1.3E-98 T 17-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VI35_10555 7b67f662a46363a1c51f66a6860eb135 441 PRINTS PR00083 Histidinol dehydrogenase signature 195 220 1.3E-98 T 17-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VI35_10555 7b67f662a46363a1c51f66a6860eb135 441 PRINTS PR00083 Histidinol dehydrogenase signature 165 191 1.3E-98 T 17-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VI35_10555 7b67f662a46363a1c51f66a6860eb135 441 PRINTS PR00083 Histidinol dehydrogenase signature 358 376 1.3E-98 T 17-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VI35_10555 7b67f662a46363a1c51f66a6860eb135 441 PRINTS PR00083 Histidinol dehydrogenase signature 317 342 1.3E-98 T 17-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VI35_10555 7b67f662a46363a1c51f66a6860eb135 441 Gene3D G3DSA:3.40.50.1980 32 229 8.5E-123 T 17-10-2018 VI35_10555 7b67f662a46363a1c51f66a6860eb135 441 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 227 259 - T 17-10-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 VI35_10555 7b67f662a46363a1c51f66a6860eb135 441 SUPERFAMILY SSF53720 3 426 5.49E-91 T 17-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 VI35_03285 0366cf73a3d60fefec829574455f6fa2 597 Pfam PF06421 GTP-binding protein LepA C-terminus 487 592 1.8E-49 T 17-10-2018 IPR013842 GTP-binding protein LepA, C-terminal VI35_03285 0366cf73a3d60fefec829574455f6fa2 597 Hamap MF_00071 Elongation factor 4 [lepA]. 1 597 307.095 T 17-10-2018 IPR006297 Elongation factor 4 GO:0005525 VI35_03285 0366cf73a3d60fefec829574455f6fa2 597 Pfam PF00679 Elongation factor G C-terminus 399 483 6.9E-20 T 17-10-2018 IPR000640 Elongation factor EFG, domain V-like VI35_03285 0366cf73a3d60fefec829574455f6fa2 597 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 42 57 - T 17-10-2018 IPR031157 Tr-type G domain, conserved site VI35_03285 0366cf73a3d60fefec829574455f6fa2 597 Gene3D G3DSA:3.30.70.3380 368 478 3.4E-40 T 17-10-2018 VI35_03285 0366cf73a3d60fefec829574455f6fa2 597 Pfam PF03144 Elongation factor Tu domain 2 205 275 1.3E-9 T 17-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 VI35_03285 0366cf73a3d60fefec829574455f6fa2 597 SUPERFAMILY SSF54980 400 493 5.28E-25 T 17-10-2018 IPR035647 EF-G domain III/V-like VI35_03285 0366cf73a3d60fefec829574455f6fa2 597 Pfam PF00009 Elongation factor Tu GTP binding domain 2 182 9.7E-54 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_03285 0366cf73a3d60fefec829574455f6fa2 597 Gene3D G3DSA:3.40.50.300 1 185 6.0E-72 T 17-10-2018 VI35_03285 0366cf73a3d60fefec829574455f6fa2 597 PRINTS PR00315 GTP-binding elongation factor signature 126 135 4.0E-14 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_03285 0366cf73a3d60fefec829574455f6fa2 597 PRINTS PR00315 GTP-binding elongation factor signature 6 19 4.0E-14 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_03285 0366cf73a3d60fefec829574455f6fa2 597 PRINTS PR00315 GTP-binding elongation factor signature 90 101 4.0E-14 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_03285 0366cf73a3d60fefec829574455f6fa2 597 PRINTS PR00315 GTP-binding elongation factor signature 74 84 4.0E-14 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_03285 0366cf73a3d60fefec829574455f6fa2 597 PRINTS PR00315 GTP-binding elongation factor signature 49 57 4.0E-14 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_03285 0366cf73a3d60fefec829574455f6fa2 597 Gene3D G3DSA:2.40.30.10 186 285 5.4E-35 T 17-10-2018 VI35_03285 0366cf73a3d60fefec829574455f6fa2 597 TIGRFAM TIGR01393 lepA: elongation factor 4 2 594 7.6E-302 T 17-10-2018 IPR006297 Elongation factor 4 GO:0005525 VI35_03285 0366cf73a3d60fefec829574455f6fa2 597 SUPERFAMILY SSF54980 292 370 1.26E-18 T 17-10-2018 IPR035647 EF-G domain III/V-like VI35_03285 0366cf73a3d60fefec829574455f6fa2 597 Gene3D G3DSA:3.30.70.870 286 367 4.8E-35 T 17-10-2018 VI35_03285 0366cf73a3d60fefec829574455f6fa2 597 Gene3D G3DSA:3.30.70.2570 479 553 2.1E-34 T 17-10-2018 IPR038363 LepA, C-terminal domain superfamily VI35_03285 0366cf73a3d60fefec829574455f6fa2 597 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 172 3.8E-18 T 17-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VI35_03285 0366cf73a3d60fefec829574455f6fa2 597 SUPERFAMILY SSF52540 2 232 2.95E-57 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_14050 9afc03f48e964e75a647bdbded35fe1d 268 Pfam PF00290 Tryptophan synthase alpha chain 8 266 6.4E-89 T 17-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 VI35_14050 9afc03f48e964e75a647bdbded35fe1d 268 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 8 263 1.0E-96 T 17-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 VI35_14050 9afc03f48e964e75a647bdbded35fe1d 268 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 265 36.509 T 17-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 VI35_14050 9afc03f48e964e75a647bdbded35fe1d 268 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 17-10-2018 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 VI35_14050 9afc03f48e964e75a647bdbded35fe1d 268 Gene3D G3DSA:3.20.20.70 1 268 5.0E-92 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_14050 9afc03f48e964e75a647bdbded35fe1d 268 SUPERFAMILY SSF51366 1 266 1.04E-88 T 17-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 VI35_10260 3a08b39e87656548a13ad5a567fda901 231 Pfam PF02525 Flavodoxin-like fold 39 228 2.8E-40 T 17-10-2018 IPR003680 Flavodoxin-like fold VI35_10260 3a08b39e87656548a13ad5a567fda901 231 SUPERFAMILY SSF52218 37 230 6.46E-52 T 17-10-2018 IPR029039 Flavoprotein-like superfamily VI35_10260 3a08b39e87656548a13ad5a567fda901 231 Gene3D G3DSA:3.40.50.360 34 230 3.3E-53 T 17-10-2018 IPR029039 Flavoprotein-like superfamily VI35_10260 3a08b39e87656548a13ad5a567fda901 231 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 38 230 29.939 T 17-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 VI35_00755 529276898b232dc9759b513ff15e355e 443 Gene3D G3DSA:3.10.20.70 1 108 1.1E-6 T 17-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 VI35_00755 529276898b232dc9759b513ff15e355e 443 Gene3D G3DSA:3.30.590.10 110 441 9.4E-108 T 17-10-2018 VI35_00755 529276898b232dc9759b513ff15e355e 443 SUPERFAMILY SSF54368 2 104 5.1E-22 T 17-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 VI35_00755 529276898b232dc9759b513ff15e355e 443 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 243 258 - T 17-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 VI35_00755 529276898b232dc9759b513ff15e355e 443 SUPERFAMILY SSF55931 108 440 8.83E-113 T 17-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 VI35_00755 529276898b232dc9759b513ff15e355e 443 Pfam PF00120 Glutamine synthetase, catalytic domain 109 437 6.9E-113 T 17-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 VI35_00755 529276898b232dc9759b513ff15e355e 443 SMART SM01230 107 362 5.4E-116 T 17-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 VI35_02265 abc1abaa7c5d10691c97bc84013d740b 419 SUPERFAMILY SSF53067 198 384 7.02E-44 T 17-10-2018 VI35_02265 abc1abaa7c5d10691c97bc84013d740b 419 PIRSF PIRSF003101 1 419 2.2E-154 T 17-10-2018 IPR020823 Cell division protein FtsA VI35_02265 abc1abaa7c5d10691c97bc84013d740b 419 Pfam PF14450 Cell division protein FtsA 207 381 9.7E-24 T 17-10-2018 VI35_02265 abc1abaa7c5d10691c97bc84013d740b 419 Pfam PF14450 Cell division protein FtsA 11 187 1.3E-10 T 17-10-2018 VI35_02265 abc1abaa7c5d10691c97bc84013d740b 419 SUPERFAMILY SSF53067 8 221 1.86E-63 T 17-10-2018 VI35_02265 abc1abaa7c5d10691c97bc84013d740b 419 Hamap MF_02033 Cell division protein FtsA [ftsA]. 6 419 29.787 T 17-10-2018 IPR020823 Cell division protein FtsA VI35_02265 abc1abaa7c5d10691c97bc84013d740b 419 Gene3D G3DSA:3.30.1490.110 87 169 3.7E-116 T 17-10-2018 VI35_02265 abc1abaa7c5d10691c97bc84013d740b 419 Pfam PF02491 SHS2 domain inserted in FTSA 85 162 1.7E-29 T 17-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 VI35_02265 abc1abaa7c5d10691c97bc84013d740b 419 Gene3D G3DSA:3.30.420.40 13 379 3.7E-116 T 17-10-2018 VI35_02265 abc1abaa7c5d10691c97bc84013d740b 419 SMART SM00842 10 196 4.0E-101 T 17-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 VI35_02265 abc1abaa7c5d10691c97bc84013d740b 419 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 9 385 2.8E-158 T 17-10-2018 IPR020823 Cell division protein FtsA VI35_02265 abc1abaa7c5d10691c97bc84013d740b 419 Gene3D G3DSA:3.30.420.40 197 359 3.7E-116 T 17-10-2018 VI35_02265 abc1abaa7c5d10691c97bc84013d740b 419 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 208 221 - T 17-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 VI35_02265 abc1abaa7c5d10691c97bc84013d740b 419 Gene3D G3DSA:3.90.640.10 235 300 3.7E-116 T 17-10-2018 VI35_16410 1a815a32add23bbc4cf3958ee9115084 281 Pfam PF01497 Periplasmic binding protein 29 253 4.0E-34 T 17-10-2018 IPR002491 ABC transporter periplasmic binding domain VI35_16410 1a815a32add23bbc4cf3958ee9115084 281 SUPERFAMILY SSF53807 26 277 1.77E-47 T 17-10-2018 VI35_16410 1a815a32add23bbc4cf3958ee9115084 281 Gene3D G3DSA:3.40.50.1980 23 141 4.9E-34 T 17-10-2018 VI35_16410 1a815a32add23bbc4cf3958ee9115084 281 Gene3D G3DSA:3.40.50.1980 142 281 7.5E-38 T 17-10-2018 VI35_18020 7177c3c6e5d52f93ea4dba36d44407c5 301 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 4 295 9.8E-67 T 17-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 VI35_18020 7177c3c6e5d52f93ea4dba36d44407c5 301 Pfam PF04261 Dyp-type peroxidase family 39 295 1.8E-67 T 17-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 VI35_18020 7177c3c6e5d52f93ea4dba36d44407c5 301 SUPERFAMILY SSF54909 3 296 9.12E-95 T 17-10-2018 IPR011008 Dimeric alpha-beta barrel VI35_00970 1275926a58fb2d8bdca82fe72ef42e25 334 Pfam PF13377 Periplasmic binding protein-like domain 168 329 3.8E-37 T 17-10-2018 VI35_00970 1275926a58fb2d8bdca82fe72ef42e25 334 Gene3D G3DSA:3.40.50.2300 63 321 7.1E-71 T 17-10-2018 VI35_00970 1275926a58fb2d8bdca82fe72ef42e25 334 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 17-10-2018 VI35_00970 1275926a58fb2d8bdca82fe72ef42e25 334 Gene3D G3DSA:1.10.260.40 1 59 5.1E-23 T 17-10-2018 VI35_00970 1275926a58fb2d8bdca82fe72ef42e25 334 SMART SM00354 1 71 5.4E-31 T 17-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VI35_00970 1275926a58fb2d8bdca82fe72ef42e25 334 Gene3D G3DSA:3.40.50.2300 160 326 7.1E-71 T 17-10-2018 VI35_00970 1275926a58fb2d8bdca82fe72ef42e25 334 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 2.0E-20 T 17-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VI35_00970 1275926a58fb2d8bdca82fe72ef42e25 334 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 2.6E-6 T 17-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VI35_00970 1275926a58fb2d8bdca82fe72ef42e25 334 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 2.6E-6 T 17-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VI35_00970 1275926a58fb2d8bdca82fe72ef42e25 334 SUPERFAMILY SSF53822 61 331 3.53E-80 T 17-10-2018 IPR028082 Periplasmic binding protein-like I VI35_00970 1275926a58fb2d8bdca82fe72ef42e25 334 SUPERFAMILY SSF47413 2 58 2.56E-17 T 17-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VI35_19395 b45bace8f06a3f94ae91b3ef03dfc150 161 PIRSF PIRSF018472 1 161 8.1E-54 T 17-10-2018 IPR026034 Cell shape-determining protein MreD, proteobacterial type VI35_19395 b45bace8f06a3f94ae91b3ef03dfc150 161 Pfam PF04093 rod shape-determining protein MreD 9 154 8.7E-31 T 17-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 VI35_19395 b45bace8f06a3f94ae91b3ef03dfc150 161 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 8 153 2.0E-44 T 17-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 VI35_04935 c3621ee91311c6b04ee55c4392440b81 82 Pfam PF12838 4Fe-4S dicluster domain 8 57 2.3E-6 T 17-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VI35_04935 c3621ee91311c6b04ee55c4392440b81 82 SUPERFAMILY SSF54862 4 76 1.71E-19 T 17-10-2018 VI35_04935 c3621ee91311c6b04ee55c4392440b81 82 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 17-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VI35_04935 c3621ee91311c6b04ee55c4392440b81 82 Gene3D G3DSA:3.30.70.20 2 82 1.7E-34 T 17-10-2018 VI35_13525 dfb62240c918cfb61a9444851505cd6f 437 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 258 436 4.4E-89 T 17-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 VI35_13525 dfb62240c918cfb61a9444851505cd6f 437 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 9 257 2.9E-111 T 17-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 VI35_13525 dfb62240c918cfb61a9444851505cd6f 437 PIRSF PIRSF001362 1 437 4.8E-225 T 17-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 VI35_13525 dfb62240c918cfb61a9444851505cd6f 437 Pfam PF00463 Isocitrate lyase family 11 257 3.1E-60 T 17-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 VI35_13525 dfb62240c918cfb61a9444851505cd6f 437 Pfam PF00463 Isocitrate lyase family 258 436 4.9E-50 T 17-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 VI35_13525 dfb62240c918cfb61a9444851505cd6f 437 ProSitePatterns PS00161 Isocitrate lyase signature. 195 200 - T 17-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 VI35_13525 dfb62240c918cfb61a9444851505cd6f 437 Gene3D G3DSA:3.20.20.60 1 419 1.6E-180 T 17-10-2018 VI35_13525 dfb62240c918cfb61a9444851505cd6f 437 SUPERFAMILY SSF51621 7 436 9.87E-154 T 17-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 VI35_08095 aef9b9d795f71c059f3c8f0b8a2cff63 179 Gene3D G3DSA:3.40.50.1820 1 179 7.6E-16 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_08095 aef9b9d795f71c059f3c8f0b8a2cff63 179 Pfam PF05728 Uncharacterised protein family (UPF0227) 1 177 1.6E-63 T 17-10-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA VI35_08095 aef9b9d795f71c059f3c8f0b8a2cff63 179 Hamap MF_01047 UPF0227 protein YcfP [ycfP]. 1 178 48.671 T 17-10-2018 IPR022987 Uncharacterised protein family UPF0227 VI35_00770 6d8cb08b4bd7322703ef47c05b38e0aa 361 Pfam PF13416 Bacterial extracellular solute-binding protein 40 318 1.3E-29 T 17-10-2018 IPR006059 Bacterial extracellular solute-binding protein VI35_00770 6d8cb08b4bd7322703ef47c05b38e0aa 361 SUPERFAMILY SSF53850 24 360 3.15E-96 T 17-10-2018 VI35_00770 6d8cb08b4bd7322703ef47c05b38e0aa 361 Gene3D G3DSA:3.40.190.10 26 329 6.7E-131 T 17-10-2018 VI35_00770 6d8cb08b4bd7322703ef47c05b38e0aa 361 Gene3D G3DSA:3.40.190.10 129 355 6.7E-131 T 17-10-2018 VI35_00770 6d8cb08b4bd7322703ef47c05b38e0aa 361 PIRSF PIRSF019574 1 361 2.6E-138 T 17-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VI35_00770 6d8cb08b4bd7322703ef47c05b38e0aa 361 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 71 85 6.7E-63 T 17-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VI35_00770 6d8cb08b4bd7322703ef47c05b38e0aa 361 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 173 192 6.7E-63 T 17-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VI35_00770 6d8cb08b4bd7322703ef47c05b38e0aa 361 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 150 164 6.7E-63 T 17-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VI35_00770 6d8cb08b4bd7322703ef47c05b38e0aa 361 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 210 229 6.7E-63 T 17-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VI35_00770 6d8cb08b4bd7322703ef47c05b38e0aa 361 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 87 100 6.7E-63 T 17-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VI35_00770 6d8cb08b4bd7322703ef47c05b38e0aa 361 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 260 279 6.7E-63 T 17-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VI35_00770 6d8cb08b4bd7322703ef47c05b38e0aa 361 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 305 331 6.7E-63 T 17-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VI35_00770 6d8cb08b4bd7322703ef47c05b38e0aa 361 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 120 136 6.7E-63 T 17-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VI35_00770 6d8cb08b4bd7322703ef47c05b38e0aa 361 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 28 44 6.7E-63 T 17-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VI35_00770 6d8cb08b4bd7322703ef47c05b38e0aa 361 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 44 65 6.7E-63 T 17-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VI35_16570 c8b50e4aa584703422674119a6372874 294 SUPERFAMILY SSF117892 56 192 4.84E-26 T 17-10-2018 IPR036013 Band 7/SPFH domain superfamily VI35_16570 c8b50e4aa584703422674119a6372874 294 SMART SM00244 18 187 6.7E-44 T 17-10-2018 IPR001107 Band 7 domain VI35_16570 c8b50e4aa584703422674119a6372874 294 PIRSF PIRSF005651 1 294 9.1E-99 T 17-10-2018 IPR010200 HflC GO:0016021|GO:0052547 VI35_16570 c8b50e4aa584703422674119a6372874 294 Pfam PF01145 SPFH domain / Band 7 family 22 202 1.5E-30 T 17-10-2018 IPR001107 Band 7 domain VI35_16570 c8b50e4aa584703422674119a6372874 294 Gene3D G3DSA:3.30.479.30 53 189 7.9E-21 T 17-10-2018 VI35_16570 c8b50e4aa584703422674119a6372874 294 TIGRFAM TIGR01932 hflC: HflC protein 1 148 7.3E-57 T 17-10-2018 IPR010200 HflC GO:0016021|GO:0052547 VI35_16570 c8b50e4aa584703422674119a6372874 294 TIGRFAM TIGR01932 hflC: HflC protein 157 287 1.0E-53 T 17-10-2018 IPR010200 HflC GO:0016021|GO:0052547 VI35_19630 b291c2deb85c5d42d85b00b2708fdfd5 427 SUPERFAMILY SSF118215 19 404 5.23E-110 T 17-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 VI35_19630 b291c2deb85c5d42d85b00b2708fdfd5 427 PRINTS PR00173 Glutamate-aspartate symporter signature 194 213 1.3E-36 T 17-10-2018 VI35_19630 b291c2deb85c5d42d85b00b2708fdfd5 427 PRINTS PR00173 Glutamate-aspartate symporter signature 17 37 1.3E-36 T 17-10-2018 VI35_19630 b291c2deb85c5d42d85b00b2708fdfd5 427 PRINTS PR00173 Glutamate-aspartate symporter signature 229 248 1.3E-36 T 17-10-2018 VI35_19630 b291c2deb85c5d42d85b00b2708fdfd5 427 PRINTS PR00173 Glutamate-aspartate symporter signature 331 350 1.3E-36 T 17-10-2018 VI35_19630 b291c2deb85c5d42d85b00b2708fdfd5 427 PRINTS PR00173 Glutamate-aspartate symporter signature 358 378 1.3E-36 T 17-10-2018 VI35_19630 b291c2deb85c5d42d85b00b2708fdfd5 427 PRINTS PR00173 Glutamate-aspartate symporter signature 84 109 1.3E-36 T 17-10-2018 VI35_19630 b291c2deb85c5d42d85b00b2708fdfd5 427 PRINTS PR00173 Glutamate-aspartate symporter signature 296 322 1.3E-36 T 17-10-2018 VI35_19630 b291c2deb85c5d42d85b00b2708fdfd5 427 Pfam PF00375 Sodium:dicarboxylate symporter family 19 403 2.2E-124 T 17-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 VI35_19630 b291c2deb85c5d42d85b00b2708fdfd5 427 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 299 322 - T 17-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site VI35_19630 b291c2deb85c5d42d85b00b2708fdfd5 427 Gene3D G3DSA:1.10.3860.10 9 422 3.2E-131 T 17-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 VI35_03115 e6c41f6bbacdaa698208e2a6b0351da2 253 Pfam PF00005 ABC transporter 20 167 2.6E-37 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_03115 e6c41f6bbacdaa698208e2a6b0351da2 253 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_03115 e6c41f6bbacdaa698208e2a6b0351da2 253 PIRSF PIRSF039085 1 243 3.1E-100 T 17-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 VI35_03115 e6c41f6bbacdaa698208e2a6b0351da2 253 SMART SM00382 29 215 1.1E-15 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_03115 e6c41f6bbacdaa698208e2a6b0351da2 253 Gene3D G3DSA:3.40.50.300 1 244 1.4E-80 T 17-10-2018 VI35_03115 e6c41f6bbacdaa698208e2a6b0351da2 253 SUPERFAMILY SSF52540 4 237 1.08E-73 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_02930 c089d47a7c0be52fe532d6068c8cdd6e 112 Pfam PF01588 Putative tRNA binding domain 14 109 5.1E-9 T 17-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 VI35_02930 c089d47a7c0be52fe532d6068c8cdd6e 112 Gene3D G3DSA:2.40.50.140 1 111 1.1E-28 T 17-10-2018 VI35_02930 c089d47a7c0be52fe532d6068c8cdd6e 112 TIGRFAM TIGR02222 chap_CsaA: export-related chaperone protein CsaA 6 111 9.6E-45 T 17-10-2018 IPR008231 Probable chaperone CsaA VI35_02930 c089d47a7c0be52fe532d6068c8cdd6e 112 SUPERFAMILY SSF50249 3 111 8.57E-29 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_10575 b8056438d0d04c7b1e412f1e045ed505 230 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 3 218 8.9E-65 T 17-10-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 VI35_10575 b8056438d0d04c7b1e412f1e045ed505 230 Gene3D G3DSA:3.30.420.40 94 187 2.2E-77 T 17-10-2018 VI35_10575 b8056438d0d04c7b1e412f1e045ed505 230 Gene3D G3DSA:3.30.420.40 3 218 2.2E-77 T 17-10-2018 VI35_10575 b8056438d0d04c7b1e412f1e045ed505 230 Pfam PF00814 Glycoprotease family 28 149 1.6E-32 T 17-10-2018 IPR000905 Gcp-like domain VI35_10575 b8056438d0d04c7b1e412f1e045ed505 230 SUPERFAMILY SSF53067 108 216 1.55E-25 T 17-10-2018 VI35_10575 b8056438d0d04c7b1e412f1e045ed505 230 SUPERFAMILY SSF53067 2 103 2.63E-31 T 17-10-2018 VI35_04610 1e283890b0da2d1146021005d436b8f3 335 SMART SM00870 4 322 1.0E-138 T 17-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 VI35_04610 1e283890b0da2d1146021005d436b8f3 335 SUPERFAMILY SSF53774 2 334 2.36E-110 T 17-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 VI35_04610 1e283890b0da2d1146021005d436b8f3 335 PIRSF PIRSF500176 1 331 8.0E-109 T 17-10-2018 VI35_04610 1e283890b0da2d1146021005d436b8f3 335 TIGRFAM TIGR00519 asnASE_I: L-asparaginase, type I 2 334 1.6E-116 T 17-10-2018 IPR006033 L-asparaginase, type I GO:0004067|GO:0006520 Reactome: R-HSA-70614 VI35_04610 1e283890b0da2d1146021005d436b8f3 335 Pfam PF00710 Asparaginase, N-terminal 5 187 4.1E-66 T 17-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 VI35_04610 1e283890b0da2d1146021005d436b8f3 335 Gene3D G3DSA:3.40.50.40 208 334 4.6E-44 T 17-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 VI35_04610 1e283890b0da2d1146021005d436b8f3 335 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 83 93 - T 17-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 VI35_04610 1e283890b0da2d1146021005d436b8f3 335 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 7 15 - T 17-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 VI35_04610 1e283890b0da2d1146021005d436b8f3 335 PRINTS PR00139 Asparaginase/glutaminase family signature 259 277 1.1E-15 T 17-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 VI35_04610 1e283890b0da2d1146021005d436b8f3 335 PRINTS PR00139 Asparaginase/glutaminase family signature 5 16 1.1E-15 T 17-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 VI35_04610 1e283890b0da2d1146021005d436b8f3 335 PRINTS PR00139 Asparaginase/glutaminase family signature 82 100 1.1E-15 T 17-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 VI35_04610 1e283890b0da2d1146021005d436b8f3 335 Gene3D G3DSA:3.40.50.1170 1 206 1.0E-86 T 17-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 VI35_04610 1e283890b0da2d1146021005d436b8f3 335 PIRSF PIRSF001220 1 333 4.3E-93 T 17-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 VI35_06295 ddee29eaa9684bb6d3b930d6b3bc9690 375 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 2 375 52.677 T 17-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 VI35_06295 ddee29eaa9684bb6d3b930d6b3bc9690 375 SUPERFAMILY SSF53187 2 374 8.47E-65 T 17-10-2018 VI35_06295 ddee29eaa9684bb6d3b930d6b3bc9690 375 SUPERFAMILY SSF55031 179 288 5.83E-29 T 17-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain VI35_06295 ddee29eaa9684bb6d3b930d6b3bc9690 375 Pfam PF01546 Peptidase family M20/M25/M40 62 370 1.0E-42 T 17-10-2018 IPR002933 Peptidase M20 GO:0016787 VI35_06295 ddee29eaa9684bb6d3b930d6b3bc9690 375 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 5 373 5.1E-175 T 17-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 VI35_06295 ddee29eaa9684bb6d3b930d6b3bc9690 375 Pfam PF07687 Peptidase dimerisation domain 175 279 3.7E-25 T 17-10-2018 IPR011650 Peptidase M20, dimerisation domain VI35_06295 ddee29eaa9684bb6d3b930d6b3bc9690 375 Gene3D G3DSA:3.40.630.10 7 362 4.1E-129 T 17-10-2018 VI35_06295 ddee29eaa9684bb6d3b930d6b3bc9690 375 Gene3D G3DSA:3.30.70.360 179 292 4.1E-129 T 17-10-2018 VI35_06295 ddee29eaa9684bb6d3b930d6b3bc9690 375 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 97 135 - T 17-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 VI35_15590 0dce9f13bd827a4829f57654819c00f2 259 Pfam PF00849 RNA pseudouridylate synthase 23 183 5.0E-34 T 17-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_15590 0dce9f13bd827a4829f57654819c00f2 259 SUPERFAMILY SSF55120 13 252 1.76E-59 T 17-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_15590 0dce9f13bd827a4829f57654819c00f2 259 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 63 77 - T 17-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_15590 0dce9f13bd827a4829f57654819c00f2 259 Gene3D G3DSA:3.30.2350.10 5 238 2.0E-59 T 17-10-2018 VI35_00320 c549c16bd4e13e137d0fb6d77b24fe41 374 SUPERFAMILY SSF51246 301 369 2.43E-17 T 17-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 VI35_00320 c549c16bd4e13e137d0fb6d77b24fe41 374 Gene3D G3DSA:3.40.50.20 1 112 1.2E-38 T 17-10-2018 VI35_00320 c549c16bd4e13e137d0fb6d77b24fe41 374 SUPERFAMILY SSF52440 7 101 3.31E-25 T 17-10-2018 IPR016185 Pre-ATP-grasp domain superfamily VI35_00320 c549c16bd4e13e137d0fb6d77b24fe41 374 Pfam PF02222 ATP-grasp domain 138 276 5.5E-39 T 17-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type VI35_00320 c549c16bd4e13e137d0fb6d77b24fe41 374 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 7 359 7.8E-105 T 17-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 VI35_00320 c549c16bd4e13e137d0fb6d77b24fe41 374 SUPERFAMILY SSF56059 103 296 5.95E-48 T 17-10-2018 VI35_00320 c549c16bd4e13e137d0fb6d77b24fe41 374 Gene3D G3DSA:3.30.1490.20 113 179 5.5E-16 T 17-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 VI35_00320 c549c16bd4e13e137d0fb6d77b24fe41 374 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 7 355 38.47 T 17-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 VI35_00320 c549c16bd4e13e137d0fb6d77b24fe41 374 Gene3D G3DSA:3.30.470.20 180 371 4.6E-64 T 17-10-2018 VI35_05490 ab9e32b6fda391892a229f328cbceab6 306 Pfam PF07859 alpha/beta hydrolase fold 78 283 5.5E-63 T 17-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 VI35_05490 ab9e32b6fda391892a229f328cbceab6 306 Gene3D G3DSA:3.40.50.1820 2 306 1.5E-79 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_05490 ab9e32b6fda391892a229f328cbceab6 306 SUPERFAMILY SSF53474 58 305 1.88E-62 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_05490 ab9e32b6fda391892a229f328cbceab6 306 ProSitePatterns PS01174 Lipolytic enzymes "G-D-X-G" family, putative serine active site. 150 162 - T 17-10-2018 IPR033140 Lipase, GDXG, putative serine active site VI35_19045 312c398a754429e6c7ea40804a6e8177 269 Pfam PF08282 haloacid dehalogenase-like hydrolase 5 262 3.4E-66 T 17-10-2018 VI35_19045 312c398a754429e6c7ea40804a6e8177 269 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 4 262 6.9E-61 T 17-10-2018 IPR000150 Cof family GO:0016787 VI35_19045 312c398a754429e6c7ea40804a6e8177 269 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 4 235 4.3E-25 T 17-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 VI35_19045 312c398a754429e6c7ea40804a6e8177 269 SUPERFAMILY SSF56784 1 267 5.89E-77 T 17-10-2018 IPR036412 HAD-like superfamily VI35_19045 312c398a754429e6c7ea40804a6e8177 269 ProSitePatterns PS01229 Hypothetical cof family signature 2. 216 238 - T 17-10-2018 VI35_19045 312c398a754429e6c7ea40804a6e8177 269 ProSitePatterns PS01228 Hypothetical cof family signature 1. 4 15 - T 17-10-2018 VI35_19045 312c398a754429e6c7ea40804a6e8177 269 Gene3D G3DSA:3.40.50.1000 3 263 3.9E-83 T 17-10-2018 IPR023214 HAD superfamily VI35_19045 312c398a754429e6c7ea40804a6e8177 269 Gene3D G3DSA:3.30.1240.10 86 191 3.9E-83 T 17-10-2018 VI35_03120 58ff8186d5b660de90e877458c726dd5 220 Gene3D G3DSA:1.10.3720.10 6 218 2.4E-48 T 17-10-2018 IPR035906 MetI-like superfamily VI35_03120 58ff8186d5b660de90e877458c726dd5 220 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 111 5.2E-19 T 17-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 VI35_03120 58ff8186d5b660de90e877458c726dd5 220 SUPERFAMILY SSF161098 15 208 1.64E-38 T 17-10-2018 IPR035906 MetI-like superfamily VI35_03120 58ff8186d5b660de90e877458c726dd5 220 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 38 201 1.3E-17 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_16400 7d96ea7734c487704815477e98cf1acd 185 PIRSF PIRSF004633 1 175 5.0E-76 T 17-10-2018 IPR014419 Heme utilization protein with pyridoxamine 5'-phosphate domain VI35_16400 7d96ea7734c487704815477e98cf1acd 185 Gene3D G3DSA:2.30.110.10 8 177 1.5E-55 T 17-10-2018 IPR012349 FMN-binding split barrel GO:0048037 VI35_16400 7d96ea7734c487704815477e98cf1acd 185 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 12 103 9.7E-18 T 17-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 VI35_16400 7d96ea7734c487704815477e98cf1acd 185 TIGRFAM TIGR04110 heme_HutZ: heme utilization protein HutZ 3 169 2.3E-91 T 17-10-2018 IPR014419 Heme utilization protein with pyridoxamine 5'-phosphate domain VI35_16400 7d96ea7734c487704815477e98cf1acd 185 SUPERFAMILY SSF50475 8 160 6.87E-37 T 17-10-2018 VI35_10230 ca1397d34f3b12ce23e502694fae4a62 203 Gene3D G3DSA:2.40.30.20 1 90 1.2E-28 T 17-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VI35_10230 ca1397d34f3b12ce23e502694fae4a62 203 Gene3D G3DSA:2.40.30.20 95 191 4.1E-27 T 17-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VI35_10230 ca1397d34f3b12ce23e502694fae4a62 203 SUPERFAMILY SSF63380 1 94 4.42E-27 T 17-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VI35_10230 ca1397d34f3b12ce23e502694fae4a62 203 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 201 7.0E-71 T 17-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VI35_10230 ca1397d34f3b12ce23e502694fae4a62 203 SUPERFAMILY SSF63380 94 199 4.76E-29 T 17-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VI35_10230 ca1397d34f3b12ce23e502694fae4a62 203 PIRSF PIRSF000498 1 203 2.2E-65 T 17-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VI35_10230 ca1397d34f3b12ce23e502694fae4a62 203 Pfam PF00677 Lumazine binding domain 3 88 6.3E-20 T 17-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VI35_10230 ca1397d34f3b12ce23e502694fae4a62 203 Pfam PF00677 Lumazine binding domain 101 185 1.3E-19 T 17-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VI35_14905 a5954b80110756b8dcace810da4b0aef 240 Gene3D G3DSA:3.90.470.20 106 199 8.5E-40 T 17-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 VI35_14905 a5954b80110756b8dcace810da4b0aef 240 SUPERFAMILY SSF56214 105 189 2.79E-21 T 17-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 VI35_14905 a5954b80110756b8dcace810da4b0aef 240 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 106 185 7.5E-15 T 17-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 VI35_14905 a5954b80110756b8dcace810da4b0aef 240 Gene3D G3DSA:3.90.470.20 21 105 8.5E-40 T 17-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 VI35_14905 a5954b80110756b8dcace810da4b0aef 240 SUPERFAMILY SSF56214 21 97 2.04E-17 T 17-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 VI35_00530 4bc5abb60aa373359e11378d9968cf98 371 SMART SM00267 189 365 1.2E-70 T 17-10-2018 IPR000160 GGDEF domain VI35_00530 4bc5abb60aa373359e11378d9968cf98 371 Pfam PF00990 Diguanylate cyclase, GGDEF domain 201 361 1.0E-53 T 17-10-2018 IPR000160 GGDEF domain VI35_00530 4bc5abb60aa373359e11378d9968cf98 371 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 199 364 1.8E-51 T 17-10-2018 IPR000160 GGDEF domain VI35_00530 4bc5abb60aa373359e11378d9968cf98 371 Gene3D G3DSA:3.30.70.270 186 365 7.8E-60 T 17-10-2018 VI35_00530 4bc5abb60aa373359e11378d9968cf98 371 SUPERFAMILY SSF55073 205 363 2.35E-50 T 17-10-2018 IPR029787 Nucleotide cyclase VI35_11190 709e81c608199db24aba49d3c0dee845 329 Pfam PF00294 pfkB family carbohydrate kinase 16 289 2.7E-50 T 17-10-2018 IPR011611 Carbohydrate kinase PfkB VI35_11190 709e81c608199db24aba49d3c0dee845 329 Gene3D G3DSA:3.40.1190.20 2 314 4.5E-98 T 17-10-2018 IPR029056 Ribokinase-like VI35_11190 709e81c608199db24aba49d3c0dee845 329 SUPERFAMILY SSF53613 3 288 2.34E-68 T 17-10-2018 IPR029056 Ribokinase-like VI35_11190 709e81c608199db24aba49d3c0dee845 329 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 247 260 - T 17-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 VI35_11190 709e81c608199db24aba49d3c0dee845 329 TIGRFAM TIGR03828 pfkB: 1-phosphofructokinase 3 307 4.3E-105 T 17-10-2018 IPR022463 Fructose 1-phosphate kinase GO:0008662 KEGG: 00051+2.7.1.56 VI35_11190 709e81c608199db24aba49d3c0dee845 329 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 3 307 4.6E-105 T 17-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 VI35_11190 709e81c608199db24aba49d3c0dee845 329 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 37 61 - T 17-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 VI35_11190 709e81c608199db24aba49d3c0dee845 329 PIRSF PIRSF000535 1 309 4.2E-96 T 17-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 VI35_06480 6e005d541f9b78041babdfa309e86bb6 238 Gene3D G3DSA:2.40.70.10 94 222 1.7E-41 T 17-10-2018 IPR021109 Aspartic peptidase domain superfamily VI35_06480 6e005d541f9b78041babdfa309e86bb6 238 SUPERFAMILY SSF50630 98 229 5.23E-41 T 17-10-2018 IPR021109 Aspartic peptidase domain superfamily VI35_06480 6e005d541f9b78041babdfa309e86bb6 238 Pfam PF05618 Putative ATP-dependant zinc protease 98 232 1.0E-41 T 17-10-2018 VI35_21240 963d0ad5760e5090a747ee22786f4633 252 Gene3D G3DSA:3.40.190.10 109 208 1.2E-61 T 17-10-2018 VI35_21240 963d0ad5760e5090a747ee22786f4633 252 SMART SM00062 27 248 8.8E-75 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_21240 963d0ad5760e5090a747ee22786f4633 252 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 28 246 1.6E-60 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_21240 963d0ad5760e5090a747ee22786f4633 252 Gene3D G3DSA:3.40.190.10 32 245 1.2E-61 T 17-10-2018 VI35_21240 963d0ad5760e5090a747ee22786f4633 252 SUPERFAMILY SSF53850 5 249 3.44E-60 T 17-10-2018 VI35_06870 283628c1a7e8ae310b096da05e220116 226 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 30 217 5.2E-17 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_06870 283628c1a7e8ae310b096da05e220116 226 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 10 215 6.5E-69 T 17-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 VI35_06870 283628c1a7e8ae310b096da05e220116 226 SUPERFAMILY SSF161098 6 214 2.35E-44 T 17-10-2018 IPR035906 MetI-like superfamily VI35_06870 283628c1a7e8ae310b096da05e220116 226 Gene3D G3DSA:1.10.3720.10 2 223 2.8E-48 T 17-10-2018 IPR035906 MetI-like superfamily VI35_18395 befb485dbf5804dc3bb197f407926394 503 SUPERFAMILY SSF52949 1 184 1.94E-52 T 17-10-2018 VI35_18395 befb485dbf5804dc3bb197f407926394 503 SUPERFAMILY SSF53187 179 493 4.71E-126 T 17-10-2018 VI35_18395 befb485dbf5804dc3bb197f407926394 503 Gene3D G3DSA:3.40.220.10 1 159 1.3E-59 T 17-10-2018 VI35_18395 befb485dbf5804dc3bb197f407926394 503 PRINTS PR00481 Cytosol aminopeptidase signature 284 305 2.2E-56 T 17-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VI35_18395 befb485dbf5804dc3bb197f407926394 503 PRINTS PR00481 Cytosol aminopeptidase signature 343 363 2.2E-56 T 17-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VI35_18395 befb485dbf5804dc3bb197f407926394 503 PRINTS PR00481 Cytosol aminopeptidase signature 371 386 2.2E-56 T 17-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VI35_18395 befb485dbf5804dc3bb197f407926394 503 PRINTS PR00481 Cytosol aminopeptidase signature 262 279 2.2E-56 T 17-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VI35_18395 befb485dbf5804dc3bb197f407926394 503 PRINTS PR00481 Cytosol aminopeptidase signature 321 342 2.2E-56 T 17-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VI35_18395 befb485dbf5804dc3bb197f407926394 503 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 19 147 5.1E-34 T 17-10-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 VI35_18395 befb485dbf5804dc3bb197f407926394 503 Gene3D G3DSA:3.40.630.10 181 495 1.2E-140 T 17-10-2018 VI35_18395 befb485dbf5804dc3bb197f407926394 503 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 347 354 - T 17-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 VI35_18395 befb485dbf5804dc3bb197f407926394 503 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 3 495 41.302 T 17-10-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 VI35_18395 befb485dbf5804dc3bb197f407926394 503 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 186 486 3.3E-126 T 17-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 VI35_00435 b1dbf3c77bdd2d71c5fd6e22c8b9dc4b 270 Gene3D G3DSA:1.10.8.50 132 270 1.2E-46 T 17-10-2018 VI35_00435 b1dbf3c77bdd2d71c5fd6e22c8b9dc4b 270 Gene3D G3DSA:3.20.190.10 2 128 1.8E-36 T 17-10-2018 IPR035937 MutM-like, N-terminal VI35_00435 b1dbf3c77bdd2d71c5fd6e22c8b9dc4b 270 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 269 3.1E-88 T 17-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 VI35_00435 b1dbf3c77bdd2d71c5fd6e22c8b9dc4b 270 Pfam PF06827 Zinc finger found in FPG and IleRS 242 269 4.4E-6 T 17-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 VI35_00435 b1dbf3c77bdd2d71c5fd6e22c8b9dc4b 270 SMART SM00898 2 115 1.0E-46 T 17-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 VI35_00435 b1dbf3c77bdd2d71c5fd6e22c8b9dc4b 270 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 270 42.253 T 17-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 VI35_00435 b1dbf3c77bdd2d71c5fd6e22c8b9dc4b 270 SUPERFAMILY SSF81624 2 139 7.2E-38 T 17-10-2018 IPR035937 MutM-like, N-terminal VI35_00435 b1dbf3c77bdd2d71c5fd6e22c8b9dc4b 270 SUPERFAMILY SSF46946 131 222 5.76E-31 T 17-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 VI35_00435 b1dbf3c77bdd2d71c5fd6e22c8b9dc4b 270 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 113 7.5E-27 T 17-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 VI35_00435 b1dbf3c77bdd2d71c5fd6e22c8b9dc4b 270 SUPERFAMILY SSF57716 218 269 1.77E-15 T 17-10-2018 VI35_00435 b1dbf3c77bdd2d71c5fd6e22c8b9dc4b 270 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 130 219 1.7E-27 T 17-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 VI35_00435 b1dbf3c77bdd2d71c5fd6e22c8b9dc4b 270 ProSitePatterns PS01242 Zinc finger FPG-type signature. 245 269 - T 17-10-2018 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 VI35_00435 b1dbf3c77bdd2d71c5fd6e22c8b9dc4b 270 SMART SM01232 130 222 9.0E-50 T 17-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 VI35_05335 c591d3ad03d30218da3f2b7eeb38d4f6 304 Gene3D G3DSA:3.40.190.10 163 262 2.4E-61 T 17-10-2018 VI35_05335 c591d3ad03d30218da3f2b7eeb38d4f6 304 SUPERFAMILY SSF53850 90 295 5.43E-43 T 17-10-2018 VI35_05335 c591d3ad03d30218da3f2b7eeb38d4f6 304 Gene3D G3DSA:3.40.190.10 91 289 2.4E-61 T 17-10-2018 VI35_05335 c591d3ad03d30218da3f2b7eeb38d4f6 304 SUPERFAMILY SSF46785 4 109 1.36E-19 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_05335 c591d3ad03d30218da3f2b7eeb38d4f6 304 Pfam PF03466 LysR substrate binding domain 88 291 3.8E-39 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_05335 c591d3ad03d30218da3f2b7eeb38d4f6 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 2.5E-17 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_05335 c591d3ad03d30218da3f2b7eeb38d4f6 304 Gene3D G3DSA:1.10.10.10 3 90 1.4E-22 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_01790 5de498fa45cdb38ef10bf53b808f1619 165 Pfam PF02470 MlaD protein 39 117 3.5E-19 T 17-10-2018 IPR003399 Mce/MlaD VI35_01790 5de498fa45cdb38ef10bf53b808f1619 165 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 4 153 3.5E-54 T 17-10-2018 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 VI35_16735 a9850cb36379fee91d053311af64ec92 166 SUPERFAMILY SSF116960 1 166 3.27E-55 T 17-10-2018 VI35_16735 a9850cb36379fee91d053311af64ec92 166 Gene3D G3DSA:1.10.287.680 1 53 1.5E-29 T 17-10-2018 IPR023145 YfbU, helix-hairpin domain superfamily VI35_16735 a9850cb36379fee91d053311af64ec92 166 Pfam PF03887 YfbU domain 1 166 1.1E-60 T 17-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU VI35_16735 a9850cb36379fee91d053311af64ec92 166 Gene3D G3DSA:1.10.3190.10 54 166 4.7E-27 T 17-10-2018 IPR023146 YfbU, alpha-helical bundle domain superfamily VI35_16735 a9850cb36379fee91d053311af64ec92 166 ProDom PD035118 UPF0304 YFBU PLASMID YPO2563/Y1624/YP2374 YBFU PM1500 OXYGEN ECA3037 VV12093 PROTEIN 1 166 1.0E-39 T 17-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU VI35_14045 96f9608d99a87ad67a4de7d6a7acdcd8 397 PIRSF PIRSF001413 2 395 5.0E-166 T 17-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 VI35_14045 96f9608d99a87ad67a4de7d6a7acdcd8 397 SUPERFAMILY SSF53686 5 389 7.6E-143 T 17-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme VI35_14045 96f9608d99a87ad67a4de7d6a7acdcd8 397 Gene3D G3DSA:3.40.50.1100 53 383 1.3E-182 T 17-10-2018 VI35_14045 96f9608d99a87ad67a4de7d6a7acdcd8 397 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 79 93 - T 17-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 VI35_14045 96f9608d99a87ad67a4de7d6a7acdcd8 397 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 1 390 49.65 T 17-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 VI35_14045 96f9608d99a87ad67a4de7d6a7acdcd8 397 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 51 373 1.9E-50 T 17-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme VI35_14045 96f9608d99a87ad67a4de7d6a7acdcd8 397 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 7 388 2.3E-190 T 17-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 VI35_14045 96f9608d99a87ad67a4de7d6a7acdcd8 397 Gene3D G3DSA:3.40.50.1100 9 204 1.3E-182 T 17-10-2018 VI35_02730 f940262fec1d2cfe39b32d8cead9e8ad 189 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 27 182 9.2E-39 T 17-10-2018 IPR005586 ABC-type transport auxiliary lipoprotein component VI35_02730 f940262fec1d2cfe39b32d8cead9e8ad 189 Gene3D G3DSA:3.40.50.10610 17 187 1.2E-10 T 17-10-2018 VI35_02730 f940262fec1d2cfe39b32d8cead9e8ad 189 SUPERFAMILY SSF159594 25 187 1.67E-26 T 17-10-2018 VI35_07205 d6bc415aabeacddf13357e0209f8a06d 75 Hamap MF_00816 UPF0352 protein YejL [yejL]. 1 70 21.096 T 17-10-2018 IPR009857 Uncharacterised protein family UPF0352 VI35_07205 d6bc415aabeacddf13357e0209f8a06d 75 SUPERFAMILY SSF158651 1 71 1.96E-26 T 17-10-2018 IPR023202 YejL-like superfamily VI35_07205 d6bc415aabeacddf13357e0209f8a06d 75 Gene3D G3DSA:1.10.3390.10 1 75 5.3E-31 T 17-10-2018 IPR023202 YejL-like superfamily VI35_07205 d6bc415aabeacddf13357e0209f8a06d 75 Pfam PF07208 Protein of unknown function (DUF1414) 26 68 2.8E-21 T 17-10-2018 IPR009857 Uncharacterised protein family UPF0352 VI35_07205 d6bc415aabeacddf13357e0209f8a06d 75 ProDom PD027794 UPF0352 YEJL NTHI1007 CPS_2611 VF1649 VV1166 HD1515 VP2129 YPO1261/Y2923/YP0880 ECA2748 1 68 4.0E-33 T 17-10-2018 IPR009857 Uncharacterised protein family UPF0352 VI35_07205 d6bc415aabeacddf13357e0209f8a06d 75 PIRSF PIRSF006188 1 71 4.0E-29 T 17-10-2018 IPR009857 Uncharacterised protein family UPF0352 VI35_03360 ee3198689fafa0cbc291a663c53a6113 243 Gene3D G3DSA:3.90.550.10 4 231 7.6E-71 T 17-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VI35_03360 ee3198689fafa0cbc291a663c53a6113 243 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 9 225 1.7E-73 T 17-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 VI35_03360 ee3198689fafa0cbc291a663c53a6113 243 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 10 222 3.8E-71 T 17-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 VI35_03360 ee3198689fafa0cbc291a663c53a6113 243 SUPERFAMILY SSF53448 9 225 5.01E-62 T 17-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VI35_03360 ee3198689fafa0cbc291a663c53a6113 243 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 7 224 42.646 T 17-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 VI35_19865 5172e7e990ad65d12fd00ca8d98e1993 114 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 1.1E-47 T 17-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_19865 5172e7e990ad65d12fd00ca8d98e1993 114 Gene3D G3DSA:3.90.470.10 1 113 5.5E-47 T 17-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 VI35_19865 5172e7e990ad65d12fd00ca8d98e1993 114 SUPERFAMILY SSF54843 1 110 3.53E-44 T 17-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 VI35_19865 5172e7e990ad65d12fd00ca8d98e1993 114 Pfam PF00237 Ribosomal protein L22p/L17e 5 107 8.7E-39 T 17-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 VI35_19865 5172e7e990ad65d12fd00ca8d98e1993 114 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 17-10-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19865 5172e7e990ad65d12fd00ca8d98e1993 114 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 110 29.16 T 17-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_02920 ccfd77f58251b5a747f24e3697f27d58 270 TIGRFAM TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase 8 257 9.2E-88 T 17-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 VI35_02920 ccfd77f58251b5a747f24e3697f27d58 270 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 217 231 - T 17-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 VI35_02920 ccfd77f58251b5a747f24e3697f27d58 270 SUPERFAMILY SSF56655 9 268 1.07E-73 T 17-10-2018 VI35_02920 ccfd77f58251b5a747f24e3697f27d58 270 Gene3D G3DSA:3.40.190.80 157 261 1.5E-27 T 17-10-2018 VI35_02920 ccfd77f58251b5a747f24e3697f27d58 270 Hamap MF_02095 3'(2'),5'-bisphosphate nucleotidase CysQ [cysQ]. 7 259 37.797 T 17-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 VI35_02920 ccfd77f58251b5a747f24e3697f27d58 270 Gene3D G3DSA:3.30.540.10 7 156 5.6E-42 T 17-10-2018 VI35_02920 ccfd77f58251b5a747f24e3697f27d58 270 Pfam PF00459 Inositol monophosphatase family 13 248 1.8E-50 T 17-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VI35_03350 a8c8ab41da8c352fcc51cb45daf8de09 433 SUPERFAMILY SSF54826 3 138 7.28E-56 T 17-10-2018 VI35_03350 a8c8ab41da8c352fcc51cb45daf8de09 433 SUPERFAMILY SSF51604 144 430 1.98E-127 T 17-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily VI35_03350 a8c8ab41da8c352fcc51cb45daf8de09 433 Gene3D G3DSA:3.30.390.10 1 127 6.2E-55 T 17-10-2018 IPR029017 Enolase-like, N-terminal VI35_03350 a8c8ab41da8c352fcc51cb45daf8de09 433 SMART SM01193 4 134 9.3E-93 T 17-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VI35_03350 a8c8ab41da8c352fcc51cb45daf8de09 433 Hamap MF_00318 Enolase [eno]. 2 417 44.46 T 17-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VI35_03350 a8c8ab41da8c352fcc51cb45daf8de09 433 PIRSF PIRSF001400 1 431 3.3E-192 T 17-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VI35_03350 a8c8ab41da8c352fcc51cb45daf8de09 433 SMART SM01192 143 431 9.8E-213 T 17-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VI35_03350 a8c8ab41da8c352fcc51cb45daf8de09 433 Pfam PF00113 Enolase, C-terminal TIM barrel domain 144 431 1.2E-137 T 17-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VI35_03350 a8c8ab41da8c352fcc51cb45daf8de09 433 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 431 1.4E-207 T 17-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VI35_03350 a8c8ab41da8c352fcc51cb45daf8de09 433 ProSitePatterns PS00164 Enolase signature. 340 353 - T 17-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_03350 a8c8ab41da8c352fcc51cb45daf8de09 433 Gene3D G3DSA:3.20.20.120 128 433 1.3E-132 T 17-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily VI35_03350 a8c8ab41da8c352fcc51cb45daf8de09 433 PRINTS PR00148 Enolase signature 369 386 4.0E-44 T 17-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VI35_03350 a8c8ab41da8c352fcc51cb45daf8de09 433 PRINTS PR00148 Enolase signature 317 328 4.0E-44 T 17-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VI35_03350 a8c8ab41da8c352fcc51cb45daf8de09 433 PRINTS PR00148 Enolase signature 165 178 4.0E-44 T 17-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VI35_03350 a8c8ab41da8c352fcc51cb45daf8de09 433 PRINTS PR00148 Enolase signature 340 354 4.0E-44 T 17-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VI35_03350 a8c8ab41da8c352fcc51cb45daf8de09 433 PRINTS PR00148 Enolase signature 37 51 4.0E-44 T 17-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VI35_03350 a8c8ab41da8c352fcc51cb45daf8de09 433 PRINTS PR00148 Enolase signature 107 123 4.0E-44 T 17-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VI35_03350 a8c8ab41da8c352fcc51cb45daf8de09 433 Pfam PF03952 Enolase, N-terminal domain 4 134 8.4E-58 T 17-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VI35_12615 86fe6b1362605e1761fa83c666516e69 643 Pfam PF00271 Helicase conserved C-terminal domain 245 353 5.1E-28 T 17-10-2018 IPR001650 Helicase, C-terminal VI35_12615 86fe6b1362605e1761fa83c666516e69 643 Pfam PF00270 DEAD/DEAH box helicase 44 209 7.1E-47 T 17-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VI35_12615 86fe6b1362605e1761fa83c666516e69 643 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 167 175 - T 17-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VI35_12615 86fe6b1362605e1761fa83c666516e69 643 Gene3D G3DSA:3.40.50.300 228 445 9.8E-52 T 17-10-2018 VI35_12615 86fe6b1362605e1761fa83c666516e69 643 SMART SM00487 38 236 5.8E-60 T 17-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VI35_12615 86fe6b1362605e1761fa83c666516e69 643 SMART SM00490 272 353 5.5E-32 T 17-10-2018 IPR001650 Helicase, C-terminal VI35_12615 86fe6b1362605e1761fa83c666516e69 643 SUPERFAMILY SSF52540 87 374 8.22E-74 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_12615 86fe6b1362605e1761fa83c666516e69 643 Gene3D G3DSA:3.40.50.300 7 225 7.4E-75 T 17-10-2018 VI35_12615 86fe6b1362605e1761fa83c666516e69 643 Hamap MF_00964 ATP-dependent RNA helicase DeaD [deaD]. 14 582 44.864 T 17-10-2018 IPR028618 ATP-dependent RNA helicase DeaD GO:0000027|GO:0004004|GO:0070417 VI35_12615 86fe6b1362605e1761fa83c666516e69 643 Pfam PF03880 DbpA RNA binding domain 510 580 7.6E-22 T 17-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain VI35_12615 86fe6b1362605e1761fa83c666516e69 643 Gene3D G3DSA:3.30.70.330 510 583 2.3E-12 T 17-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily VI35_16355 1577748c8bd153887c7245f4461773d7 212 ProSitePatterns PS00042 Crp-type HTH domain signature. 170 193 - T 17-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 VI35_16355 1577748c8bd153887c7245f4461773d7 212 SUPERFAMILY SSF46785 141 209 1.86E-15 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_16355 1577748c8bd153887c7245f4461773d7 212 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 168 184 1.7E-10 T 17-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 VI35_16355 1577748c8bd153887c7245f4461773d7 212 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 184 199 1.7E-10 T 17-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 VI35_16355 1577748c8bd153887c7245f4461773d7 212 SMART SM00100 2 124 6.8E-25 T 17-10-2018 IPR000595 Cyclic nucleotide-binding domain VI35_16355 1577748c8bd153887c7245f4461773d7 212 Gene3D G3DSA:1.10.10.10 141 209 1.9E-35 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_16355 1577748c8bd153887c7245f4461773d7 212 SUPERFAMILY SSF51206 8 139 6.42E-33 T 17-10-2018 IPR018490 Cyclic nucleotide-binding-like VI35_16355 1577748c8bd153887c7245f4461773d7 212 Pfam PF00325 Bacterial regulatory proteins, crp family 168 199 5.4E-15 T 17-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 VI35_16355 1577748c8bd153887c7245f4461773d7 212 ProSitePatterns PS00888 Cyclic nucleotide-binding domain signature 1. 30 46 - T 17-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site VI35_16355 1577748c8bd153887c7245f4461773d7 212 Gene3D G3DSA:2.60.120.10 10 140 2.8E-42 T 17-10-2018 IPR014710 RmlC-like jelly roll fold VI35_16355 1577748c8bd153887c7245f4461773d7 212 Pfam PF00027 Cyclic nucleotide-binding domain 23 111 3.2E-22 T 17-10-2018 IPR000595 Cyclic nucleotide-binding domain VI35_16355 1577748c8bd153887c7245f4461773d7 212 SMART SM00419 162 210 7.1E-16 T 17-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 VI35_16355 1577748c8bd153887c7245f4461773d7 212 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 71 91 - T 17-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site VI35_20430 7c2e9c31f5de42cb6a921dfc2ef0768a 916 Gene3D G3DSA:3.40.50.1010 7 283 4.5E-90 T 17-10-2018 VI35_20430 7c2e9c31f5de42cb6a921dfc2ef0768a 916 SMART SM00475 5 268 9.6E-115 T 17-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 VI35_20430 7c2e9c31f5de42cb6a921dfc2ef0768a 916 Gene3D G3DSA:3.30.70.370 651 912 7.9E-113 T 17-10-2018 VI35_20430 7c2e9c31f5de42cb6a921dfc2ef0768a 916 SUPERFAMILY SSF88723 5 170 1.35E-53 T 17-10-2018 IPR029060 PIN-like domain superfamily VI35_20430 7c2e9c31f5de42cb6a921dfc2ef0768a 916 Pfam PF00476 DNA polymerase family A 539 913 7.1E-156 T 17-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_20430 7c2e9c31f5de42cb6a921dfc2ef0768a 916 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 171 272 5.6E-28 T 17-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 VI35_20430 7c2e9c31f5de42cb6a921dfc2ef0768a 916 SUPERFAMILY SSF47807 171 292 1.41E-28 T 17-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily VI35_20430 7c2e9c31f5de42cb6a921dfc2ef0768a 916 Gene3D G3DSA:1.10.150.20 174 253 4.5E-90 T 17-10-2018 VI35_20430 7c2e9c31f5de42cb6a921dfc2ef0768a 916 TIGRFAM TIGR00593 pola: DNA polymerase I 7 916 6.6E-283 T 17-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_20430 7c2e9c31f5de42cb6a921dfc2ef0768a 916 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 7 170 5.1E-52 T 17-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 VI35_20430 7c2e9c31f5de42cb6a921dfc2ef0768a 916 Gene3D G3DSA:1.20.1060.10 531 645 1.8E-40 T 17-10-2018 VI35_20430 7c2e9c31f5de42cb6a921dfc2ef0768a 916 SUPERFAMILY SSF56672 509 916 7.67E-157 T 17-10-2018 VI35_20430 7c2e9c31f5de42cb6a921dfc2ef0768a 916 Gene3D G3DSA:1.10.150.20 696 839 7.9E-113 T 17-10-2018 VI35_20430 7c2e9c31f5de42cb6a921dfc2ef0768a 916 SMART SM00474 317 504 1.5E-41 T 17-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 VI35_20430 7c2e9c31f5de42cb6a921dfc2ef0768a 916 Gene3D G3DSA:3.30.420.10 314 529 1.7E-73 T 17-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VI35_20430 7c2e9c31f5de42cb6a921dfc2ef0768a 916 PRINTS PR00868 DNA-polymerase family A (pol I) signature 863 876 6.3E-81 T 17-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_20430 7c2e9c31f5de42cb6a921dfc2ef0768a 916 PRINTS PR00868 DNA-polymerase family A (pol I) signature 665 680 6.3E-81 T 17-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_20430 7c2e9c31f5de42cb6a921dfc2ef0768a 916 PRINTS PR00868 DNA-polymerase family A (pol I) signature 717 730 6.3E-81 T 17-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_20430 7c2e9c31f5de42cb6a921dfc2ef0768a 916 PRINTS PR00868 DNA-polymerase family A (pol I) signature 642 664 6.3E-81 T 17-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_20430 7c2e9c31f5de42cb6a921dfc2ef0768a 916 PRINTS PR00868 DNA-polymerase family A (pol I) signature 778 789 6.3E-81 T 17-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_20430 7c2e9c31f5de42cb6a921dfc2ef0768a 916 PRINTS PR00868 DNA-polymerase family A (pol I) signature 800 811 6.3E-81 T 17-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_20430 7c2e9c31f5de42cb6a921dfc2ef0768a 916 PRINTS PR00868 DNA-polymerase family A (pol I) signature 741 766 6.3E-81 T 17-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_20430 7c2e9c31f5de42cb6a921dfc2ef0768a 916 PRINTS PR00868 DNA-polymerase family A (pol I) signature 687 710 6.3E-81 T 17-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_20430 7c2e9c31f5de42cb6a921dfc2ef0768a 916 PRINTS PR00868 DNA-polymerase family A (pol I) signature 832 848 6.3E-81 T 17-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_20430 7c2e9c31f5de42cb6a921dfc2ef0768a 916 SUPERFAMILY SSF53098 320 504 9.28E-60 T 17-10-2018 IPR012337 Ribonuclease H-like superfamily VI35_20430 7c2e9c31f5de42cb6a921dfc2ef0768a 916 SMART SM00482 673 880 5.0E-120 T 17-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_20430 7c2e9c31f5de42cb6a921dfc2ef0768a 916 ProSitePatterns PS00447 DNA polymerase family A signature. 741 760 - T 17-10-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_20430 7c2e9c31f5de42cb6a921dfc2ef0768a 916 SMART SM00279 173 208 1.9E-11 T 17-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 VI35_20430 7c2e9c31f5de42cb6a921dfc2ef0768a 916 Pfam PF01612 3'-5' exonuclease 317 503 1.4E-40 T 17-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 VI35_16940 3c5a0a169803d6f407fd405438cdd5b5 302 Gene3D G3DSA:3.40.190.290 89 283 5.0E-40 T 17-10-2018 VI35_16940 3c5a0a169803d6f407fd405438cdd5b5 302 SUPERFAMILY SSF46785 1 108 3.95E-17 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_16940 3c5a0a169803d6f407fd405438cdd5b5 302 Gene3D G3DSA:1.10.10.10 3 85 1.9E-16 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_16940 3c5a0a169803d6f407fd405438cdd5b5 302 SUPERFAMILY SSF53850 86 288 1.63E-40 T 17-10-2018 VI35_16940 3c5a0a169803d6f407fd405438cdd5b5 302 Pfam PF03466 LysR substrate binding domain 86 284 9.6E-37 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_16940 3c5a0a169803d6f407fd405438cdd5b5 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 5.0E-14 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_14470 e6683be916a12b0a97a9b583e3cc9cb6 456 PRINTS PR00149 Fumarate lyase superfamily signature 251 278 8.4E-18 T 17-10-2018 IPR000362 Fumarate lyase family VI35_14470 e6683be916a12b0a97a9b583e3cc9cb6 456 PRINTS PR00149 Fumarate lyase superfamily signature 294 310 8.4E-18 T 17-10-2018 IPR000362 Fumarate lyase family VI35_14470 e6683be916a12b0a97a9b583e3cc9cb6 456 PRINTS PR00149 Fumarate lyase superfamily signature 163 181 8.4E-18 T 17-10-2018 IPR000362 Fumarate lyase family VI35_14470 e6683be916a12b0a97a9b583e3cc9cb6 456 PRINTS PR00149 Fumarate lyase superfamily signature 117 135 8.4E-18 T 17-10-2018 IPR000362 Fumarate lyase family VI35_14470 e6683be916a12b0a97a9b583e3cc9cb6 456 ProSitePatterns PS00163 Fumarate lyases signature. 294 303 - T 17-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 VI35_14470 e6683be916a12b0a97a9b583e3cc9cb6 456 Pfam PF08328 Adenylosuccinate lyase C-terminal 331 445 3.1E-52 T 17-10-2018 IPR013539 Adenylosuccinate lyase PurB, C-terminal GO:0004018|GO:0006188 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234 VI35_14470 e6683be916a12b0a97a9b583e3cc9cb6 456 Gene3D G3DSA:1.20.200.10 118 446 5.0E-158 T 17-10-2018 VI35_14470 e6683be916a12b0a97a9b583e3cc9cb6 456 Pfam PF00206 Lyase 14 312 3.8E-74 T 17-10-2018 IPR022761 Fumarate lyase, N-terminal VI35_14470 e6683be916a12b0a97a9b583e3cc9cb6 456 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 12 454 1.3E-147 T 17-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 VI35_14470 e6683be916a12b0a97a9b583e3cc9cb6 456 Gene3D G3DSA:1.10.40.30 382 445 5.0E-158 T 17-10-2018 VI35_14470 e6683be916a12b0a97a9b583e3cc9cb6 456 Gene3D G3DSA:1.10.275.10 1 117 3.6E-50 T 17-10-2018 IPR024083 Fumarase/histidase, N-terminal VI35_14470 e6683be916a12b0a97a9b583e3cc9cb6 456 SUPERFAMILY SSF48557 4 446 4.56E-106 T 17-10-2018 IPR008948 L-Aspartase-like GO:0003824 VI35_11850 94f636318060dfb19c34820a3d9a6a66 370 Gene3D G3DSA:3.40.50.2000 45 183 1.0E-11 T 17-10-2018 VI35_11850 94f636318060dfb19c34820a3d9a6a66 370 Gene3D G3DSA:3.40.50.2000 203 346 2.8E-16 T 17-10-2018 VI35_11850 94f636318060dfb19c34820a3d9a6a66 370 SUPERFAMILY SSF53756 44 330 3.45E-39 T 17-10-2018 VI35_11850 94f636318060dfb19c34820a3d9a6a66 370 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 270 326 4.6E-10 T 17-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 VI35_08470 077a4db46cb7e2134cc833aca5ae6944 1161 Pfam PF14331 ImcF-related N-terminal domain 201 450 2.2E-72 T 17-10-2018 IPR025743 ImcF-related, N-terminal domain VI35_08470 077a4db46cb7e2134cc833aca5ae6944 1161 Pfam PF06744 Type VI secretion protein IcmF C-terminal 914 1109 4.9E-56 T 17-10-2018 IPR010623 Type VI secretion system IcmF, C-terminal VI35_08470 077a4db46cb7e2134cc833aca5ae6944 1161 SUPERFAMILY SSF52540 127 299 1.52E-5 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_08470 077a4db46cb7e2134cc833aca5ae6944 1161 Pfam PF06761 Intracellular multiplication and human macrophage-killing 502 815 7.6E-75 T 17-10-2018 IPR009612 ImcF-related VI35_08470 077a4db46cb7e2134cc833aca5ae6944 1161 TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF 24 1158 0.0 T 17-10-2018 IPR017731 Type VI secretion system, IcmF VI35_12470 39bccb2b9f98ce5fbd5edc9d0658815e 392 SUPERFAMILY SSF51905 1 383 2.45E-51 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_12470 39bccb2b9f98ce5fbd5edc9d0658815e 392 Gene3D G3DSA:3.50.50.60 1 326 4.9E-112 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_12470 39bccb2b9f98ce5fbd5edc9d0658815e 392 Gene3D G3DSA:3.30.9.50 67 257 4.9E-112 T 17-10-2018 VI35_12470 39bccb2b9f98ce5fbd5edc9d0658815e 392 Pfam PF01494 FAD binding domain 2 316 2.0E-23 T 17-10-2018 IPR002938 FAD-binding domain GO:0071949 VI35_12470 39bccb2b9f98ce5fbd5edc9d0658815e 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 268 283 2.5E-11 T 17-10-2018 VI35_12470 39bccb2b9f98ce5fbd5edc9d0658815e 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 143 158 2.5E-11 T 17-10-2018 VI35_12470 39bccb2b9f98ce5fbd5edc9d0658815e 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 283 299 2.5E-11 T 17-10-2018 VI35_12470 39bccb2b9f98ce5fbd5edc9d0658815e 392 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 1 378 2.6E-126 T 17-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 VI35_12470 39bccb2b9f98ce5fbd5edc9d0658815e 392 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 282 295 - T 17-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 VI35_03565 898a391d873d2f14fd933de0a5b28df1 228 SMART SM00382 31 224 1.0E-11 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_03565 898a391d873d2f14fd933de0a5b28df1 228 Gene3D G3DSA:3.40.50.300 3 218 1.4E-54 T 17-10-2018 VI35_03565 898a391d873d2f14fd933de0a5b28df1 228 SUPERFAMILY SSF52540 27 211 7.93E-48 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_03565 898a391d873d2f14fd933de0a5b28df1 228 Pfam PF00005 ABC transporter 27 176 4.7E-28 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_19110 1797ce1e6ad52ce0bcfd9836e8a72878 244 Gene3D G3DSA:3.40.50.10090 32 159 6.6E-72 T 17-10-2018 VI35_19110 1797ce1e6ad52ce0bcfd9836e8a72878 244 Gene3D G3DSA:3.40.50.10090 4 238 6.6E-72 T 17-10-2018 VI35_19110 1797ce1e6ad52ce0bcfd9836e8a72878 244 Pfam PF02602 Uroporphyrinogen-III synthase HemD 14 236 3.2E-40 T 17-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VI35_19110 1797ce1e6ad52ce0bcfd9836e8a72878 244 SUPERFAMILY SSF69618 3 239 2.49E-56 T 17-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VI35_00235 ce0b2c0626e1aa1926cf0b61cfe5e354 395 Gene3D G3DSA:3.40.50.720 1 393 1.6E-164 T 17-10-2018 VI35_00235 ce0b2c0626e1aa1926cf0b61cfe5e354 395 Hamap MF_01838 Trans-2-enoyl-CoA reductase [NADH] [fabV]. 1 391 50.197 T 17-10-2018 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VI35_00235 ce0b2c0626e1aa1926cf0b61cfe5e354 395 Pfam PF07055 Enoyl reductase FAD binding domain 323 385 1.0E-24 T 17-10-2018 IPR024906 Enoyl reductase FAD binding domain KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VI35_00235 ce0b2c0626e1aa1926cf0b61cfe5e354 395 Pfam PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase 2 78 5.0E-33 T 17-10-2018 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VI35_00235 ce0b2c0626e1aa1926cf0b61cfe5e354 395 Pfam PF12241 Trans-2-enoyl-CoA reductase catalytic region 83 315 5.8E-102 T 17-10-2018 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VI35_11125 54fd2420e14fab352154e78958cc0da5 642 Gene3D G3DSA:3.30.930.10 223 531 4.5E-129 T 17-10-2018 VI35_11125 54fd2420e14fab352154e78958cc0da5 642 SUPERFAMILY SSF81271 3 61 5.23E-16 T 17-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 VI35_11125 54fd2420e14fab352154e78958cc0da5 642 Pfam PF03129 Anticodon binding domain 541 629 9.3E-21 T 17-10-2018 IPR004154 Anticodon-binding VI35_11125 54fd2420e14fab352154e78958cc0da5 642 Gene3D G3DSA:3.30.54.20 130 187 1.3E-62 T 17-10-2018 VI35_11125 54fd2420e14fab352154e78958cc0da5 642 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 172 219 2.6E-14 T 17-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 VI35_11125 54fd2420e14fab352154e78958cc0da5 642 SUPERFAMILY SSF55186 63 241 2.75E-64 T 17-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 VI35_11125 54fd2420e14fab352154e78958cc0da5 642 Pfam PF02824 TGS domain 4 61 6.2E-12 T 17-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 VI35_11125 54fd2420e14fab352154e78958cc0da5 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 329 357 2.9E-54 T 17-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 VI35_11125 54fd2420e14fab352154e78958cc0da5 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 362 385 2.9E-54 T 17-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 VI35_11125 54fd2420e14fab352154e78958cc0da5 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 534 546 2.9E-54 T 17-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 VI35_11125 54fd2420e14fab352154e78958cc0da5 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 507 520 2.9E-54 T 17-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 VI35_11125 54fd2420e14fab352154e78958cc0da5 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 464 492 2.9E-54 T 17-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 VI35_11125 54fd2420e14fab352154e78958cc0da5 642 SUPERFAMILY SSF55681 243 525 1.99E-99 T 17-10-2018 VI35_11125 54fd2420e14fab352154e78958cc0da5 642 Gene3D G3DSA:3.10.20.30 3 62 7.9E-23 T 17-10-2018 IPR012675 Beta-grasp domain superfamily VI35_11125 54fd2420e14fab352154e78958cc0da5 642 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 318 529 1.8E-48 T 17-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_11125 54fd2420e14fab352154e78958cc0da5 642 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 72 631 2.0E-239 T 17-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 VI35_11125 54fd2420e14fab352154e78958cc0da5 642 Gene3D G3DSA:3.30.980.10 69 222 1.3E-62 T 17-10-2018 VI35_11125 54fd2420e14fab352154e78958cc0da5 642 Gene3D G3DSA:3.40.50.800 532 642 1.6E-29 T 17-10-2018 IPR036621 Anticodon-binding domain superfamily VI35_11125 54fd2420e14fab352154e78958cc0da5 642 SMART SM00863 170 219 7.9E-19 T 17-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 VI35_11125 54fd2420e14fab352154e78958cc0da5 642 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 66 634 33.833 T 17-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 VI35_11125 54fd2420e14fab352154e78958cc0da5 642 SUPERFAMILY SSF52954 529 636 6.8E-32 T 17-10-2018 VI35_18910 625bbb1538ffd6ba9ae03dfd1750923e 303 Pfam PF00561 alpha/beta hydrolase fold 27 236 4.0E-17 T 17-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VI35_18910 625bbb1538ffd6ba9ae03dfd1750923e 303 SUPERFAMILY SSF53474 22 300 1.64E-46 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_18910 625bbb1538ffd6ba9ae03dfd1750923e 303 Gene3D G3DSA:3.40.50.1820 20 303 6.3E-90 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_17890 1a8230ef1cd5f40e913f795e77cdaf97 310 Gene3D G3DSA:1.10.10.10 3 93 3.2E-18 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_17890 1a8230ef1cd5f40e913f795e77cdaf97 310 Gene3D G3DSA:3.40.190.10 169 265 5.4E-6 T 17-10-2018 VI35_17890 1a8230ef1cd5f40e913f795e77cdaf97 310 SUPERFAMILY SSF53850 90 287 1.09E-22 T 17-10-2018 VI35_17890 1a8230ef1cd5f40e913f795e77cdaf97 310 Gene3D G3DSA:3.40.190.10 97 273 5.4E-6 T 17-10-2018 VI35_17890 1a8230ef1cd5f40e913f795e77cdaf97 310 Pfam PF03466 LysR substrate binding domain 97 286 2.9E-11 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_17890 1a8230ef1cd5f40e913f795e77cdaf97 310 SUPERFAMILY SSF46785 2 85 1.03E-18 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_17890 1a8230ef1cd5f40e913f795e77cdaf97 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 8.8E-15 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_00295 e4a4c3dcadc9b237650434d61d16c318 1194 Gene3D G3DSA:3.40.190.10 377 473 1.1E-45 T 17-10-2018 VI35_00295 e4a4c3dcadc9b237650434d61d16c318 1194 Gene3D G3DSA:3.40.190.10 140 229 2.8E-42 T 17-10-2018 VI35_00295 e4a4c3dcadc9b237650434d61d16c318 1194 SUPERFAMILY SSF47226 1049 1178 5.89E-14 T 17-10-2018 IPR036641 HPT domain superfamily GO:0000160 VI35_00295 e4a4c3dcadc9b237650434d61d16c318 1194 SUPERFAMILY SSF53850 47 268 9.01E-23 T 17-10-2018 VI35_00295 e4a4c3dcadc9b237650434d61d16c318 1194 SUPERFAMILY SSF55874 758 929 5.5E-42 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_00295 e4a4c3dcadc9b237650434d61d16c318 1194 Gene3D G3DSA:3.30.450.20 559 692 9.7E-7 T 17-10-2018 VI35_00295 e4a4c3dcadc9b237650434d61d16c318 1194 Gene3D G3DSA:1.20.120.160 1089 1190 5.9E-11 T 17-10-2018 IPR036641 HPT domain superfamily GO:0000160 VI35_00295 e4a4c3dcadc9b237650434d61d16c318 1194 SUPERFAMILY SSF53850 294 511 6.0E-32 T 17-10-2018 VI35_00295 e4a4c3dcadc9b237650434d61d16c318 1194 PRINTS PR00344 Bacterial sensor protein C-terminal signature 912 925 5.1E-14 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_00295 e4a4c3dcadc9b237650434d61d16c318 1194 PRINTS PR00344 Bacterial sensor protein C-terminal signature 853 867 5.1E-14 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_00295 e4a4c3dcadc9b237650434d61d16c318 1194 PRINTS PR00344 Bacterial sensor protein C-terminal signature 888 906 5.1E-14 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_00295 e4a4c3dcadc9b237650434d61d16c318 1194 PRINTS PR00344 Bacterial sensor protein C-terminal signature 871 881 5.1E-14 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_00295 e4a4c3dcadc9b237650434d61d16c318 1194 Pfam PF00512 His Kinase A (phospho-acceptor) domain 702 768 2.6E-17 T 17-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VI35_00295 e4a4c3dcadc9b237650434d61d16c318 1194 SMART SM00388 702 768 5.1E-21 T 17-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VI35_00295 e4a4c3dcadc9b237650434d61d16c318 1194 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 63 268 2.0E-16 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_00295 e4a4c3dcadc9b237650434d61d16c318 1194 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 294 510 4.6E-23 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_00295 e4a4c3dcadc9b237650434d61d16c318 1194 SMART SM00448 950 1066 4.4E-30 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_00295 e4a4c3dcadc9b237650434d61d16c318 1194 SUPERFAMILY SSF55785 553 680 4.19E-9 T 17-10-2018 IPR035965 PAS domain superfamily VI35_00295 e4a4c3dcadc9b237650434d61d16c318 1194 SMART SM00387 813 928 7.5E-30 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_00295 e4a4c3dcadc9b237650434d61d16c318 1194 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 819 926 3.8E-26 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_00295 e4a4c3dcadc9b237650434d61d16c318 1194 Pfam PF00072 Response regulator receiver domain 952 1064 3.2E-21 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_00295 e4a4c3dcadc9b237650434d61d16c318 1194 Pfam PF01627 Hpt domain 1103 1179 3.0E-9 T 17-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VI35_00295 e4a4c3dcadc9b237650434d61d16c318 1194 Gene3D G3DSA:3.40.190.10 45 266 2.8E-42 T 17-10-2018 VI35_00295 e4a4c3dcadc9b237650434d61d16c318 1194 Gene3D G3DSA:3.30.565.10 769 933 7.8E-43 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_00295 e4a4c3dcadc9b237650434d61d16c318 1194 SUPERFAMILY SSF52172 948 1077 3.98E-34 T 17-10-2018 IPR011006 CheY-like superfamily VI35_00295 e4a4c3dcadc9b237650434d61d16c318 1194 SMART SM00062 55 270 2.1E-10 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_00295 e4a4c3dcadc9b237650434d61d16c318 1194 SMART SM00062 293 514 1.3E-15 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_00295 e4a4c3dcadc9b237650434d61d16c318 1194 SUPERFAMILY SSF47384 685 769 2.55E-20 T 17-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VI35_00295 e4a4c3dcadc9b237650434d61d16c318 1194 Gene3D G3DSA:3.40.190.10 283 510 1.1E-45 T 17-10-2018 VI35_00295 e4a4c3dcadc9b237650434d61d16c318 1194 Gene3D G3DSA:3.40.50.2300 943 1078 4.2E-33 T 17-10-2018 VI35_00295 e4a4c3dcadc9b237650434d61d16c318 1194 Gene3D G3DSA:1.10.287.130 693 768 5.9E-24 T 17-10-2018 VI35_13855 966c79111fe0bf1058dee62648d80525 229 Pfam PF02348 Cytidylyltransferase 6 167 2.3E-20 T 17-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 VI35_13855 966c79111fe0bf1058dee62648d80525 229 Gene3D G3DSA:3.90.550.10 2 228 5.6E-61 T 17-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VI35_13855 966c79111fe0bf1058dee62648d80525 229 SUPERFAMILY SSF53448 1 228 3.52E-56 T 17-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VI35_01165 d3a1b53e8bbe76da991e1c7f3c225e63 470 SUPERFAMILY SSF47384 232 313 1.29E-17 T 17-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VI35_01165 d3a1b53e8bbe76da991e1c7f3c225e63 470 SMART SM00387 357 467 4.7E-25 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_01165 d3a1b53e8bbe76da991e1c7f3c225e63 470 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 360 465 1.1E-15 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_01165 d3a1b53e8bbe76da991e1c7f3c225e63 470 Gene3D G3DSA:1.10.287.130 236 312 4.0E-17 T 17-10-2018 VI35_01165 d3a1b53e8bbe76da991e1c7f3c225e63 470 PRINTS PR00344 Bacterial sensor protein C-terminal signature 429 447 7.5E-6 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_01165 d3a1b53e8bbe76da991e1c7f3c225e63 470 PRINTS PR00344 Bacterial sensor protein C-terminal signature 412 422 7.5E-6 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_01165 d3a1b53e8bbe76da991e1c7f3c225e63 470 PRINTS PR00344 Bacterial sensor protein C-terminal signature 202 216 7.5E-6 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_01165 d3a1b53e8bbe76da991e1c7f3c225e63 470 SMART SM00388 246 314 5.4E-15 T 17-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VI35_01165 d3a1b53e8bbe76da991e1c7f3c225e63 470 Pfam PF00512 His Kinase A (phospho-acceptor) domain 247 312 7.7E-13 T 17-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VI35_01165 d3a1b53e8bbe76da991e1c7f3c225e63 470 Gene3D G3DSA:3.30.565.10 313 467 4.8E-27 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_01165 d3a1b53e8bbe76da991e1c7f3c225e63 470 SUPERFAMILY SSF55874 319 465 4.32E-27 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_18455 6279ed8d9fc680176501dc492f5d4a27 62 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 48 4.0E-20 T 17-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 VI35_18455 6279ed8d9fc680176501dc492f5d4a27 62 Gene3D G3DSA:3.30.70.1680 1 57 2.3E-29 T 17-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 VI35_18455 6279ed8d9fc680176501dc492f5d4a27 62 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 55 1.8E-29 T 17-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 VI35_18455 6279ed8d9fc680176501dc492f5d4a27 62 SUPERFAMILY SSF117130 1 54 5.75E-21 T 17-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 VI35_18455 6279ed8d9fc680176501dc492f5d4a27 62 Pfam PF02599 Global regulator protein family 1 52 1.7E-26 T 17-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 VI35_18455 6279ed8d9fc680176501dc492f5d4a27 62 Hamap MF_00167 Translational regulator CsrA [csrA]. 1 59 16.977 T 17-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 VI35_09865 1600710020b9d04199f708f069a0108c 1154 Gene3D G3DSA:2.30.30.840 488 544 1.7E-233 T 17-10-2018 VI35_09865 1600710020b9d04199f708f069a0108c 1154 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 148 1084 0.0 T 17-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 VI35_09865 1600710020b9d04199f708f069a0108c 1154 Pfam PF00271 Helicase conserved C-terminal domain 809 912 1.7E-15 T 17-10-2018 IPR001650 Helicase, C-terminal VI35_09865 1600710020b9d04199f708f069a0108c 1154 Gene3D G3DSA:3.40.50.11140 357 457 7.9E-21 T 17-10-2018 VI35_09865 1600710020b9d04199f708f069a0108c 1154 SMART SM00982 1011 1111 2.2E-46 T 17-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 VI35_09865 1600710020b9d04199f708f069a0108c 1154 SUPERFAMILY SSF52540 529 786 5.05E-63 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_09865 1600710020b9d04199f708f069a0108c 1154 Pfam PF00270 DEAD/DEAH box helicase 608 768 4.5E-19 T 17-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VI35_09865 1600710020b9d04199f708f069a0108c 1154 Pfam PF02559 CarD-like/TRCF domain 485 578 1.5E-23 T 17-10-2018 IPR003711 CarD-like/TRCF domain VI35_09865 1600710020b9d04199f708f069a0108c 1154 Gene3D G3DSA:3.40.50.300 484 993 1.7E-233 T 17-10-2018 VI35_09865 1600710020b9d04199f708f069a0108c 1154 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 31 1111 28.294 T 17-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 VI35_09865 1600710020b9d04199f708f069a0108c 1154 SUPERFAMILY SSF143517 997 1150 3.14E-42 T 17-10-2018 IPR037235 TRCF-like, C-terminal domain VI35_09865 1600710020b9d04199f708f069a0108c 1154 Gene3D G3DSA:3.30.2060.10 131 216 2.5E-120 T 17-10-2018 VI35_09865 1600710020b9d04199f708f069a0108c 1154 SUPERFAMILY SSF52540 10 342 1.02E-101 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_09865 1600710020b9d04199f708f069a0108c 1154 SUPERFAMILY SSF52540 785 993 2.11E-48 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_09865 1600710020b9d04199f708f069a0108c 1154 Gene3D G3DSA:3.90.1150.50 1007 1153 5.2E-42 T 17-10-2018 IPR037235 TRCF-like, C-terminal domain VI35_09865 1600710020b9d04199f708f069a0108c 1154 Pfam PF03461 TRCF domain 1012 1104 6.4E-27 T 17-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 VI35_09865 1600710020b9d04199f708f069a0108c 1154 SUPERFAMILY SSF52540 353 470 1.17E-21 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_09865 1600710020b9d04199f708f069a0108c 1154 Gene3D G3DSA:3.40.50.300 545 784 1.7E-233 T 17-10-2018 VI35_09865 1600710020b9d04199f708f069a0108c 1154 SMART SM00487 603 793 1.3E-32 T 17-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VI35_09865 1600710020b9d04199f708f069a0108c 1154 Gene3D G3DSA:3.40.50.11180 24 333 2.5E-120 T 17-10-2018 VI35_09865 1600710020b9d04199f708f069a0108c 1154 SUPERFAMILY SSF141259 475 546 2.09E-22 T 17-10-2018 IPR036101 CarD-like/TRCF domain superfamily VI35_09865 1600710020b9d04199f708f069a0108c 1154 SMART SM00490 829 913 2.1E-17 T 17-10-2018 IPR001650 Helicase, C-terminal VI35_09865 1600710020b9d04199f708f069a0108c 1154 SMART SM01058 484 579 2.9E-48 T 17-10-2018 IPR003711 CarD-like/TRCF domain VI35_01945 f6fb9f127487ca2198bc6a3115b602d3 209 Pfam PF00043 Glutathione S-transferase, C-terminal domain 102 192 4.7E-9 T 17-10-2018 IPR004046 Glutathione S-transferase, C-terminal VI35_01945 f6fb9f127487ca2198bc6a3115b602d3 209 Pfam PF13417 Glutathione S-transferase, N-terminal domain 21 87 5.2E-15 T 17-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 VI35_01945 f6fb9f127487ca2198bc6a3115b602d3 209 SUPERFAMILY SSF47616 82 206 1.42E-22 T 17-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily VI35_01945 f6fb9f127487ca2198bc6a3115b602d3 209 Gene3D G3DSA:1.20.1050.10 89 191 6.6E-80 T 17-10-2018 VI35_01945 f6fb9f127487ca2198bc6a3115b602d3 209 SUPERFAMILY SSF52833 8 86 1.88E-21 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_01945 f6fb9f127487ca2198bc6a3115b602d3 209 Gene3D G3DSA:3.40.30.10 11 200 6.6E-80 T 17-10-2018 VI35_06375 c952be42498473ce27124faf24caea2e 226 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 2 212 30.8 T 17-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 VI35_06375 c952be42498473ce27124faf24caea2e 226 Pfam PF13500 AAA domain 4 210 4.7E-37 T 17-10-2018 VI35_06375 c952be42498473ce27124faf24caea2e 226 Gene3D G3DSA:3.40.50.300 3 224 2.6E-69 T 17-10-2018 VI35_06375 c952be42498473ce27124faf24caea2e 226 SUPERFAMILY SSF52540 1 220 2.37E-63 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_06375 c952be42498473ce27124faf24caea2e 226 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 6 177 1.1E-51 T 17-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 VI35_06375 c952be42498473ce27124faf24caea2e 226 PIRSF PIRSF006755 1 224 1.3E-74 T 17-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 VI35_09235 e796e139c58a6e86bdda7abb81422365 680 Gene3D G3DSA:1.10.287.950 347 678 5.9E-64 T 17-10-2018 VI35_09235 e796e139c58a6e86bdda7abb81422365 680 SMART SM00304 348 400 6.8E-8 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_09235 e796e139c58a6e86bdda7abb81422365 680 SMART SM00283 415 676 1.2E-47 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_09235 e796e139c58a6e86bdda7abb81422365 680 Pfam PF00672 HAMP domain 348 395 1.8E-7 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_09235 e796e139c58a6e86bdda7abb81422365 680 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 487 643 2.7E-37 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_09235 e796e139c58a6e86bdda7abb81422365 680 SUPERFAMILY SSF58104 368 677 1.09E-62 T 17-10-2018 VI35_14710 c3f0d983d03e8a24bf0162f1ede8da80 575 SUPERFAMILY SSF52009 125 246 7.98E-37 T 17-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 VI35_14710 c3f0d983d03e8a24bf0162f1ede8da80 575 PIRSF PIRSF000732 1 574 3.4E-223 T 17-10-2018 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 VI35_14710 c3f0d983d03e8a24bf0162f1ede8da80 575 Gene3D G3DSA:1.10.274.10 21 146 4.6E-83 T 17-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 VI35_14710 c3f0d983d03e8a24bf0162f1ede8da80 575 SUPERFAMILY SSF51621 249 549 8.64E-113 T 17-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 VI35_14710 c3f0d983d03e8a24bf0162f1ede8da80 575 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 184 195 - T 17-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 VI35_14710 c3f0d983d03e8a24bf0162f1ede8da80 575 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 447 465 - T 17-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 VI35_14710 c3f0d983d03e8a24bf0162f1ede8da80 575 Pfam PF00391 PEP-utilising enzyme, mobile domain 152 222 1.6E-22 T 17-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 VI35_14710 c3f0d983d03e8a24bf0162f1ede8da80 575 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 2 565 8.7E-249 T 17-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 VI35_14710 c3f0d983d03e8a24bf0162f1ede8da80 575 Pfam PF05524 PEP-utilising enzyme, N-terminal 4 126 2.3E-33 T 17-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 VI35_14710 c3f0d983d03e8a24bf0162f1ede8da80 575 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 251 541 1.1E-126 T 17-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 VI35_14710 c3f0d983d03e8a24bf0162f1ede8da80 575 Gene3D G3DSA:3.20.20.60 234 575 2.6E-129 T 17-10-2018 VI35_14710 c3f0d983d03e8a24bf0162f1ede8da80 575 Gene3D G3DSA:3.50.30.10 4 233 4.6E-83 T 17-10-2018 VI35_14710 c3f0d983d03e8a24bf0162f1ede8da80 575 SUPERFAMILY SSF47831 23 143 1.31E-34 T 17-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 VI35_14710 c3f0d983d03e8a24bf0162f1ede8da80 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 293 312 2.2E-30 T 17-10-2018 VI35_14710 c3f0d983d03e8a24bf0162f1ede8da80 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 500 512 2.2E-30 T 17-10-2018 VI35_14710 c3f0d983d03e8a24bf0162f1ede8da80 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 464 479 2.2E-30 T 17-10-2018 VI35_14710 c3f0d983d03e8a24bf0162f1ede8da80 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 447 462 2.2E-30 T 17-10-2018 VI35_13745 5cb09a76ab9f3f5b2df7de406ac67398 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 36 - T 17-10-2018 IPR019844 Cold-shock conserved site VI35_13745 5cb09a76ab9f3f5b2df7de406ac67398 69 SMART SM00357 6 69 4.1E-31 T 17-10-2018 IPR011129 Cold shock domain GO:0003676 VI35_13745 5cb09a76ab9f3f5b2df7de406ac67398 69 Gene3D G3DSA:2.40.50.140 4 68 9.6E-31 T 17-10-2018 VI35_13745 5cb09a76ab9f3f5b2df7de406ac67398 69 SUPERFAMILY SSF50249 2 68 2.57E-25 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_13745 5cb09a76ab9f3f5b2df7de406ac67398 69 PIRSF PIRSF002599 1 69 1.1E-24 T 17-10-2018 IPR012156 Cold shock, CspA GO:0003676 VI35_13745 5cb09a76ab9f3f5b2df7de406ac67398 69 PRINTS PR00050 Cold shock protein signature 42 60 1.2E-16 T 17-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VI35_13745 5cb09a76ab9f3f5b2df7de406ac67398 69 PRINTS PR00050 Cold shock protein signature 27 36 1.2E-16 T 17-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VI35_13745 5cb09a76ab9f3f5b2df7de406ac67398 69 PRINTS PR00050 Cold shock protein signature 7 22 1.2E-16 T 17-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VI35_13745 5cb09a76ab9f3f5b2df7de406ac67398 69 Pfam PF00313 'Cold-shock' DNA-binding domain 6 68 5.3E-30 T 17-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VI35_02030 55099c0c28036087099efdad5b690238 584 Pfam PF08345 Flagellar M-ring protein C-terminal 268 433 2.4E-35 T 17-10-2018 IPR013556 Flagellar M-ring C-terminal VI35_02030 55099c0c28036087099efdad5b690238 584 PIRSF PIRSF004862 14 583 3.3E-121 T 17-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 VI35_02030 55099c0c28036087099efdad5b690238 584 PRINTS PR01009 Flagellar M-ring protein signature 133 151 7.4E-29 T 17-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 VI35_02030 55099c0c28036087099efdad5b690238 584 PRINTS PR01009 Flagellar M-ring protein signature 165 179 7.4E-29 T 17-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 VI35_02030 55099c0c28036087099efdad5b690238 584 PRINTS PR01009 Flagellar M-ring protein signature 209 227 7.4E-29 T 17-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 VI35_02030 55099c0c28036087099efdad5b690238 584 PRINTS PR01009 Flagellar M-ring protein signature 281 299 7.4E-29 T 17-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 VI35_02030 55099c0c28036087099efdad5b690238 584 PRINTS PR01009 Flagellar M-ring protein signature 364 388 7.4E-29 T 17-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 VI35_02030 55099c0c28036087099efdad5b690238 584 Pfam PF01514 Secretory protein of YscJ/FliF family 42 233 6.6E-65 T 17-10-2018 IPR006182 Secretory protein YscJ/FliF VI35_02030 55099c0c28036087099efdad5b690238 584 Gene3D G3DSA:3.30.300.30 132 235 4.2E-14 T 17-10-2018 VI35_02030 55099c0c28036087099efdad5b690238 584 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 26 453 1.9E-73 T 17-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 VI35_19890 cc9edffca2e520fd9dc0d4c37b23ecbd 210 Pfam PF00297 Ribosomal protein L3 101 183 1.2E-13 T 17-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_19890 cc9edffca2e520fd9dc0d4c37b23ecbd 210 SUPERFAMILY SSF50447 1 209 1.06E-82 T 17-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VI35_19890 cc9edffca2e520fd9dc0d4c37b23ecbd 210 ProSitePatterns PS00474 Ribosomal protein L3 signature. 102 125 - T 17-10-2018 IPR019926 Ribosomal protein L3, conserved site VI35_19890 cc9edffca2e520fd9dc0d4c37b23ecbd 210 Gene3D G3DSA:2.40.30.10 129 210 2.9E-19 T 17-10-2018 VI35_19890 cc9edffca2e520fd9dc0d4c37b23ecbd 210 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 2 208 40.862 T 17-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_19890 cc9edffca2e520fd9dc0d4c37b23ecbd 210 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 4 205 1.7E-93 T 17-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_19890 cc9edffca2e520fd9dc0d4c37b23ecbd 210 Gene3D G3DSA:2.40.50.620 33 97 4.3E-16 T 17-10-2018 VI35_04605 3dc4e5da56bd9d2531dc5bab439fc80f 399 TIGRFAM TIGR00210 gltS: sodium/glutamate symporter 3 397 1.3E-175 T 17-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 VI35_04605 3dc4e5da56bd9d2531dc5bab439fc80f 399 Hamap MF_02062 Sodium/glutamate symporter [gltS]. 2 397 25.087 T 17-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 VI35_04605 3dc4e5da56bd9d2531dc5bab439fc80f 399 Pfam PF03616 Sodium/glutamate symporter 2 366 2.1E-152 T 17-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 VI35_12255 f3ed9fb415383964b93f0c3953038d7c 497 Gene3D G3DSA:1.10.530.10 287 472 1.7E-34 T 17-10-2018 VI35_12255 f3ed9fb415383964b93f0c3953038d7c 497 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 49 270 2.1E-39 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_12255 f3ed9fb415383964b93f0c3953038d7c 497 SUPERFAMILY SSF53850 44 270 1.76E-41 T 17-10-2018 VI35_12255 f3ed9fb415383964b93f0c3953038d7c 497 Pfam PF01464 Transglycosylase SLT domain 299 406 8.9E-23 T 17-10-2018 IPR008258 Transglycosylase SLT domain 1 VI35_12255 f3ed9fb415383964b93f0c3953038d7c 497 Hamap MF_02016 Membrane-bound lytic murein transglycosylase F [mltF]. 15 478 47.453 T 17-10-2018 IPR023703 Membrane-bound lytic murein transglycosylase F GO:0016837 VI35_12255 f3ed9fb415383964b93f0c3953038d7c 497 Gene3D G3DSA:3.40.190.10 133 227 9.7E-66 T 17-10-2018 VI35_12255 f3ed9fb415383964b93f0c3953038d7c 497 SMART SM00062 48 271 2.5E-27 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_12255 f3ed9fb415383964b93f0c3953038d7c 497 Gene3D G3DSA:3.40.190.10 42 266 9.7E-66 T 17-10-2018 VI35_12255 f3ed9fb415383964b93f0c3953038d7c 497 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 312 340 - T 17-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 VI35_12255 f3ed9fb415383964b93f0c3953038d7c 497 SUPERFAMILY SSF53955 249 452 5.23E-36 T 17-10-2018 IPR023346 Lysozyme-like domain superfamily VI35_00855 e34aed5ea8fce00862306f76f768a257 105 Pfam PF13806 Rieske-like [2Fe-2S] domain 4 104 1.9E-37 T 17-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 VI35_00855 e34aed5ea8fce00862306f76f768a257 105 Gene3D G3DSA:2.102.10.10 1 105 2.7E-32 T 17-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 VI35_00855 e34aed5ea8fce00862306f76f768a257 105 SUPERFAMILY SSF50022 3 105 1.06E-35 T 17-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 VI35_00855 e34aed5ea8fce00862306f76f768a257 105 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 4 104 1.0E-33 T 17-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 VI35_08195 b5cb15206c3bf95a4f7e9497e15d558f 234 Gene3D G3DSA:3.40.1350.10 5 123 5.5E-8 T 17-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 VI35_08195 b5cb15206c3bf95a4f7e9497e15d558f 234 Pfam PF04471 Restriction endonuclease 3 112 1.1E-12 T 17-10-2018 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 VI35_08195 b5cb15206c3bf95a4f7e9497e15d558f 234 SUPERFAMILY SSF52980 3 112 1.23E-16 T 17-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 VI35_13060 ed6a29610c71f7f123761b45401e3bc9 345 Gene3D G3DSA:3.40.390.10 175 345 5.8E-76 T 17-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 VI35_13060 ed6a29610c71f7f123761b45401e3bc9 345 SMART SM01351 207 339 1.1E-68 T 17-10-2018 IPR029463 Lysine-specific metallo-endopeptidase GO:0004222 VI35_13060 ed6a29610c71f7f123761b45401e3bc9 345 Gene3D G3DSA:2.60.40.2970 22 163 3.0E-55 T 17-10-2018 VI35_13060 ed6a29610c71f7f123761b45401e3bc9 345 Pfam PF14521 Lysine-specific metallo-endopeptidase 212 339 1.2E-45 T 17-10-2018 IPR029463 Lysine-specific metallo-endopeptidase GO:0004222 VI35_13060 ed6a29610c71f7f123761b45401e3bc9 345 SUPERFAMILY SSF55486 181 343 5.49E-52 T 17-10-2018 VI35_06330 349bc849598d469a2737b3d07bde5aa5 218 Gene3D G3DSA:3.40.50.620 1 122 1.6E-18 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_06330 349bc849598d469a2737b3d07bde5aa5 218 SUPERFAMILY SSF52402 1 214 3.4E-52 T 17-10-2018 VI35_06330 349bc849598d469a2737b3d07bde5aa5 218 Pfam PF01902 Diphthamide synthase 3 212 3.5E-27 T 17-10-2018 IPR002761 Diphthamide synthase domain MetaCyc: PWY-6482|MetaCyc: PWY-7546|Reactome: R-HSA-5358493 VI35_06330 349bc849598d469a2737b3d07bde5aa5 218 Gene3D G3DSA:3.90.1490.10 123 217 2.2E-18 T 17-10-2018 VI35_18195 9c3320f08e4fef8bfb72d93ba627a17e 74 Gene3D G3DSA:1.10.1660.10 16 74 1.1E-8 T 17-10-2018 VI35_18195 9c3320f08e4fef8bfb72d93ba627a17e 74 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 21 72 3.0E-8 T 17-10-2018 IPR010093 SinI-like, DNA-binding domain GO:0003677 VI35_18195 9c3320f08e4fef8bfb72d93ba627a17e 74 SUPERFAMILY SSF46955 20 71 1.47E-8 T 17-10-2018 IPR009061 Putative DNA-binding domain superfamily VI35_18195 9c3320f08e4fef8bfb72d93ba627a17e 74 Pfam PF12728 Helix-turn-helix domain 21 72 3.5E-10 T 17-10-2018 VI35_16655 2fd4e12aae778e6455df2a6bf7475140 403 Pfam PF00563 EAL domain 146 380 2.0E-68 T 17-10-2018 IPR001633 EAL domain VI35_16655 2fd4e12aae778e6455df2a6bf7475140 403 Gene3D G3DSA:3.40.50.2300 6 139 6.6E-24 T 17-10-2018 VI35_16655 2fd4e12aae778e6455df2a6bf7475140 403 SMART SM00448 8 125 6.5E-16 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_16655 2fd4e12aae778e6455df2a6bf7475140 403 Pfam PF00072 Response regulator receiver domain 10 124 9.6E-19 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_16655 2fd4e12aae778e6455df2a6bf7475140 403 Gene3D G3DSA:3.20.20.450 144 391 1.3E-85 T 17-10-2018 IPR035919 EAL domain superfamily VI35_16655 2fd4e12aae778e6455df2a6bf7475140 403 SMART SM00052 140 385 1.6E-94 T 17-10-2018 IPR001633 EAL domain VI35_16655 2fd4e12aae778e6455df2a6bf7475140 403 SUPERFAMILY SSF52172 8 137 1.05E-23 T 17-10-2018 IPR011006 CheY-like superfamily VI35_16655 2fd4e12aae778e6455df2a6bf7475140 403 SUPERFAMILY SSF141868 146 393 7.59E-83 T 17-10-2018 IPR035919 EAL domain superfamily VI35_09240 a4bd47e0507bf2e5e5b7e200210cf5ff 360 SUPERFAMILY SSF52540 4 242 5.18E-87 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_09240 a4bd47e0507bf2e5e5b7e200210cf5ff 360 Pfam PF00005 ABC transporter 19 161 3.0E-34 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_09240 a4bd47e0507bf2e5e5b7e200210cf5ff 360 SMART SM00382 28 211 6.1E-12 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_09240 a4bd47e0507bf2e5e5b7e200210cf5ff 360 Gene3D G3DSA:2.40.50.140 288 343 6.9E-29 T 17-10-2018 VI35_09240 a4bd47e0507bf2e5e5b7e200210cf5ff 360 Gene3D G3DSA:2.40.50.940 222 352 6.9E-29 T 17-10-2018 VI35_09240 a4bd47e0507bf2e5e5b7e200210cf5ff 360 Gene3D G3DSA:3.40.50.300 3 221 1.3E-66 T 17-10-2018 VI35_09240 a4bd47e0507bf2e5e5b7e200210cf5ff 360 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_09240 a4bd47e0507bf2e5e5b7e200210cf5ff 360 SUPERFAMILY SSF50331 236 358 2.04E-22 T 17-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal VI35_16750 5d2cebb84f76e973d813989590912962 717 Gene3D G3DSA:3.40.1390.20 227 369 2.4E-20 T 17-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily VI35_16750 5d2cebb84f76e973d813989590912962 717 Pfam PF01515 Phosphate acetyl/butaryl transferase 395 709 3.3E-127 T 17-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 VI35_16750 5d2cebb84f76e973d813989590912962 717 SUPERFAMILY SSF75138 233 354 2.22E-26 T 17-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily VI35_16750 5d2cebb84f76e973d813989590912962 717 SUPERFAMILY SSF53659 396 714 3.17E-95 T 17-10-2018 VI35_16750 5d2cebb84f76e973d813989590912962 717 PIRSF PIRSF006107 1 717 0.0 T 17-10-2018 IPR016475 Phosphate acetyltransferase, bacteria GO:0008959 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 VI35_16750 5d2cebb84f76e973d813989590912962 717 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 410 709 2.8E-134 T 17-10-2018 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 VI35_16750 5d2cebb84f76e973d813989590912962 717 SUPERFAMILY SSF52540 3 243 7.33E-25 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_16750 5d2cebb84f76e973d813989590912962 717 Gene3D G3DSA:3.40.50.10750 533 686 1.0E-135 T 17-10-2018 VI35_16750 5d2cebb84f76e973d813989590912962 717 Pfam PF13500 AAA domain 3 234 1.2E-43 T 17-10-2018 VI35_16750 5d2cebb84f76e973d813989590912962 717 Gene3D G3DSA:3.40.50.10950 402 713 1.0E-135 T 17-10-2018 VI35_16750 5d2cebb84f76e973d813989590912962 717 Pfam PF07085 DRTGG domain 237 348 3.2E-30 T 17-10-2018 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 VI35_16750 5d2cebb84f76e973d813989590912962 717 Gene3D G3DSA:3.40.50.300 1 199 4.4E-14 T 17-10-2018 VI35_04780 3006c0671c999236bc07da63f3332ed3 574 Gene3D G3DSA:3.40.50.300 301 573 2.1E-86 T 17-10-2018 VI35_04780 3006c0671c999236bc07da63f3332ed3 574 Gene3D G3DSA:3.40.50.300 1 277 4.9E-85 T 17-10-2018 VI35_04780 3006c0671c999236bc07da63f3332ed3 574 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_04780 3006c0671c999236bc07da63f3332ed3 574 Pfam PF00005 ABC transporter 331 484 7.4E-34 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_04780 3006c0671c999236bc07da63f3332ed3 574 ProSitePatterns PS00211 ABC transporters family signature. 456 470 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_04780 3006c0671c999236bc07da63f3332ed3 574 Pfam PF00005 ABC transporter 24 181 1.9E-27 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_04780 3006c0671c999236bc07da63f3332ed3 574 SMART SM00382 339 539 1.0E-15 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_04780 3006c0671c999236bc07da63f3332ed3 574 SMART SM00382 32 231 7.5E-16 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_04780 3006c0671c999236bc07da63f3332ed3 574 SUPERFAMILY SSF52540 3 253 1.5E-64 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_04780 3006c0671c999236bc07da63f3332ed3 574 SUPERFAMILY SSF52540 318 554 1.57E-71 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_04780 3006c0671c999236bc07da63f3332ed3 574 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 535 567 0.0038 T 17-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VI35_04780 3006c0671c999236bc07da63f3332ed3 574 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 263 3.0E-6 T 17-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VI35_07680 7b61654e4a709fe5db654a3e073f1235 314 Pfam PF03741 Integral membrane protein TerC family 77 279 2.9E-56 T 17-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 VI35_07680 7b61654e4a709fe5db654a3e073f1235 314 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 3 311 5.9E-124 T 17-10-2018 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 VI35_01015 e63e23d499f0dcd8e3209e733766cf49 334 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 53 60 - T 17-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 VI35_01015 e63e23d499f0dcd8e3209e733766cf49 334 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 8 148 8.0E-44 T 17-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 VI35_01015 e63e23d499f0dcd8e3209e733766cf49 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 135 146 3.6E-26 T 17-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 VI35_01015 e63e23d499f0dcd8e3209e733766cf49 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 268 277 3.6E-26 T 17-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 VI35_01015 e63e23d499f0dcd8e3209e733766cf49 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 297 320 3.6E-26 T 17-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 VI35_01015 e63e23d499f0dcd8e3209e733766cf49 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 53 72 3.6E-26 T 17-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 VI35_01015 e63e23d499f0dcd8e3209e733766cf49 334 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 7 333 84.981 T 17-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 VI35_01015 e63e23d499f0dcd8e3209e733766cf49 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 124 138 1.7E-31 T 17-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 VI35_01015 e63e23d499f0dcd8e3209e733766cf49 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 311 322 1.7E-31 T 17-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 VI35_01015 e63e23d499f0dcd8e3209e733766cf49 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 84 97 1.7E-31 T 17-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 VI35_01015 e63e23d499f0dcd8e3209e733766cf49 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 230 240 1.7E-31 T 17-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 VI35_01015 e63e23d499f0dcd8e3209e733766cf49 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 51 65 1.7E-31 T 17-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 VI35_01015 e63e23d499f0dcd8e3209e733766cf49 334 SUPERFAMILY SSF53671 4 333 2.75E-98 T 17-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 VI35_01015 e63e23d499f0dcd8e3209e733766cf49 334 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 157 330 1.2E-56 T 17-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 VI35_01015 e63e23d499f0dcd8e3209e733766cf49 334 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 8 332 3.9E-132 T 17-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 VI35_01015 e63e23d499f0dcd8e3209e733766cf49 334 Gene3D G3DSA:3.40.50.1370 151 319 9.9E-144 T 17-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 VI35_01015 e63e23d499f0dcd8e3209e733766cf49 334 Gene3D G3DSA:3.40.50.1370 5 329 9.9E-144 T 17-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 VI35_13185 ff954011025493bb3d9943e5c980d8e8 756 Pfam PF02421 Ferrous iron transport protein B 5 158 6.0E-60 T 17-10-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 VI35_13185 ff954011025493bb3d9943e5c980d8e8 756 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 1.8E-6 T 17-10-2018 IPR006073 GTP binding domain GO:0005525 VI35_13185 ff954011025493bb3d9943e5c980d8e8 756 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 1.8E-6 T 17-10-2018 IPR006073 GTP binding domain GO:0005525 VI35_13185 ff954011025493bb3d9943e5c980d8e8 756 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 53 68 1.8E-6 T 17-10-2018 IPR006073 GTP binding domain GO:0005525 VI35_13185 ff954011025493bb3d9943e5c980d8e8 756 SUPERFAMILY SSF52540 4 164 5.2E-38 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_13185 ff954011025493bb3d9943e5c980d8e8 756 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 3 154 1.1E-13 T 17-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VI35_13185 ff954011025493bb3d9943e5c980d8e8 756 Gene3D G3DSA:3.40.50.300 4 176 2.1E-46 T 17-10-2018 VI35_13185 ff954011025493bb3d9943e5c980d8e8 756 TIGRFAM TIGR00437 feoB: ferrous iron transport protein B 9 687 4.1E-179 T 17-10-2018 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 VI35_13185 ff954011025493bb3d9943e5c980d8e8 756 Pfam PF07664 Ferrous iron transport protein B C terminus 451 503 6.4E-18 T 17-10-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 VI35_13185 ff954011025493bb3d9943e5c980d8e8 756 Pfam PF07670 Nucleoside recognition 509 690 1.1E-33 T 17-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 VI35_13185 ff954011025493bb3d9943e5c980d8e8 756 Pfam PF07670 Nucleoside recognition 348 438 6.0E-12 T 17-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 VI35_13960 cfa33191a190349abf34302ad4a8b68c 471 Gene3D G3DSA:1.20.1600.10 47 456 2.5E-140 T 17-10-2018 VI35_13960 cfa33191a190349abf34302ad4a8b68c 471 Pfam PF02321 Outer membrane efflux protein 273 454 1.9E-30 T 17-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VI35_13960 cfa33191a190349abf34302ad4a8b68c 471 Pfam PF02321 Outer membrane efflux protein 56 246 3.6E-23 T 17-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VI35_13960 cfa33191a190349abf34302ad4a8b68c 471 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 11 456 7.0E-125 T 17-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 VI35_13960 cfa33191a190349abf34302ad4a8b68c 471 SUPERFAMILY SSF56954 2 459 3.66E-115 T 17-10-2018 VI35_13960 cfa33191a190349abf34302ad4a8b68c 471 Gene3D G3DSA:2.20.200.10 93 345 2.5E-140 T 17-10-2018 VI35_09160 db378b19e7ca88b381cbcdcf14eaa8c0 426 SMART SM00825 Beta-ketoacyl synthase 9 425 2.4E-16 T 17-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain VI35_09160 db378b19e7ca88b381cbcdcf14eaa8c0 426 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 268 381 1.7E-37 T 17-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal VI35_09160 db378b19e7ca88b381cbcdcf14eaa8c0 426 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 8 422 2.5E-162 T 17-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 VI35_09160 db378b19e7ca88b381cbcdcf14eaa8c0 426 SUPERFAMILY SSF53901 8 265 1.83E-70 T 17-10-2018 IPR016039 Thiolase-like GO:0003824 VI35_09160 db378b19e7ca88b381cbcdcf14eaa8c0 426 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 167 183 - T 17-10-2018 IPR018201 Beta-ketoacyl synthase, active site VI35_09160 db378b19e7ca88b381cbcdcf14eaa8c0 426 Gene3D G3DSA:3.40.47.10 1 268 1.1E-80 T 17-10-2018 IPR016039 Thiolase-like GO:0003824 VI35_09160 db378b19e7ca88b381cbcdcf14eaa8c0 426 Gene3D G3DSA:3.40.47.10 274 426 7.2E-54 T 17-10-2018 IPR016039 Thiolase-like GO:0003824 VI35_09160 db378b19e7ca88b381cbcdcf14eaa8c0 426 PIRSF PIRSF000447 4 426 1.3E-159 T 17-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 VI35_09160 db378b19e7ca88b381cbcdcf14eaa8c0 426 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 8 260 3.5E-56 T 17-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal VI35_09160 db378b19e7ca88b381cbcdcf14eaa8c0 426 SUPERFAMILY SSF53901 228 425 3.07E-67 T 17-10-2018 IPR016039 Thiolase-like GO:0003824 VI35_12750 91cfa50c0dd15f22748e1e8ac291f2ce 718 Pfam PF00593 TonB dependent receptor 251 717 7.2E-47 T 17-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel VI35_12750 91cfa50c0dd15f22748e1e8ac291f2ce 718 Gene3D G3DSA:2.170.130.10 53 181 1.8E-29 T 17-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily VI35_12750 91cfa50c0dd15f22748e1e8ac291f2ce 718 SUPERFAMILY SSF56935 31 717 1.12E-114 T 17-10-2018 VI35_12750 91cfa50c0dd15f22748e1e8ac291f2ce 718 Pfam PF07715 TonB-dependent Receptor Plug Domain 75 174 6.9E-10 T 17-10-2018 IPR012910 TonB-dependent receptor, plug domain VI35_12750 91cfa50c0dd15f22748e1e8ac291f2ce 718 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 77 716 7.1E-90 T 17-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 VI35_12750 91cfa50c0dd15f22748e1e8ac291f2ce 718 Gene3D G3DSA:2.40.170.20 182 717 1.5E-140 T 17-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VI35_12750 91cfa50c0dd15f22748e1e8ac291f2ce 718 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 46 - T 17-10-2018 IPR010916 TonB box, conserved site VI35_03690 024496b8c78fbf7b42e44363c04b0f74 106 Gene3D G3DSA:1.10.3730.20 1 106 5.4E-17 T 17-10-2018 VI35_03690 024496b8c78fbf7b42e44363c04b0f74 106 Pfam PF00893 Small Multidrug Resistance protein 4 95 6.7E-18 T 17-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 VI35_03690 024496b8c78fbf7b42e44363c04b0f74 106 SUPERFAMILY SSF103481 7 104 1.96E-13 T 17-10-2018 VI35_02415 93d1c33541321feadb0a738cd90665ad 468 Gene3D G3DSA:1.10.45.10 433 466 1.1E-5 T 17-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 VI35_02415 93d1c33541321feadb0a738cd90665ad 468 Gene3D G3DSA:3.30.70.2520 329 428 1.9E-7 T 17-10-2018 VI35_02415 93d1c33541321feadb0a738cd90665ad 468 Gene3D G3DSA:3.30.465.10 89 211 4.4E-26 T 17-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 VI35_02415 93d1c33541321feadb0a738cd90665ad 468 SUPERFAMILY SSF56176 19 197 2.04E-29 T 17-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 VI35_02415 93d1c33541321feadb0a738cd90665ad 468 Pfam PF04030 D-arabinono-1,4-lactone oxidase 191 461 9.5E-40 T 17-10-2018 IPR007173 D-arabinono-1,4-lactone oxidase GO:0003885|GO:0016020|GO:0055114 VI35_02415 93d1c33541321feadb0a738cd90665ad 468 Pfam PF01565 FAD binding domain 34 168 1.0E-19 T 17-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 VI35_02415 93d1c33541321feadb0a738cd90665ad 468 Gene3D G3DSA:3.30.43.10 14 87 1.3E-7 T 17-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 VI35_19765 0678c5d2e02d6a6231f23763a0577406 329 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 60 156 1.2E-23 T 17-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_19765 0678c5d2e02d6a6231f23763a0577406 329 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 29 228 7.6E-23 T 17-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_19765 0678c5d2e02d6a6231f23763a0577406 329 SUPERFAMILY SSF47789 251 325 1.27E-25 T 17-10-2018 VI35_19765 0678c5d2e02d6a6231f23763a0577406 329 SMART SM00662 23 234 4.8E-103 T 17-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_19765 0678c5d2e02d6a6231f23763a0577406 329 Gene3D G3DSA:1.10.150.20 244 329 9.7E-39 T 17-10-2018 VI35_19765 0678c5d2e02d6a6231f23763a0577406 329 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 256 329 2.0E-36 T 17-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_19765 0678c5d2e02d6a6231f23763a0577406 329 Gene3D G3DSA:2.170.120.12 53 177 1.5E-83 T 17-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_19765 0678c5d2e02d6a6231f23763a0577406 329 SUPERFAMILY SSF56553 53 178 6.98E-41 T 17-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_19765 0678c5d2e02d6a6231f23763a0577406 329 SUPERFAMILY SSF55257 7 233 7.85E-29 T 17-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_19765 0678c5d2e02d6a6231f23763a0577406 329 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 24 316 9.2E-111 T 17-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_19765 0678c5d2e02d6a6231f23763a0577406 329 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 245 308 7.5E-24 T 17-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_19765 0678c5d2e02d6a6231f23763a0577406 329 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 5 317 34.607 T 17-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_19765 0678c5d2e02d6a6231f23763a0577406 329 Gene3D G3DSA:3.30.1360.10 17 228 1.5E-83 T 17-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_02525 5136097798fa27169fdce2c8f5b44c4a 64 SUPERFAMILY SSF55008 1 64 1.96E-16 T 17-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 VI35_02525 5136097798fa27169fdce2c8f5b44c4a 64 ProSitePatterns PS01047 Heavy-metal-associated domain. 7 36 - T 17-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 VI35_02525 5136097798fa27169fdce2c8f5b44c4a 64 Pfam PF00403 Heavy-metal-associated domain 5 61 7.6E-14 T 17-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 VI35_02525 5136097798fa27169fdce2c8f5b44c4a 64 Gene3D G3DSA:3.30.70.100 2 64 1.6E-17 T 17-10-2018 VI35_12280 2e9ff9e2e34ec3fd1b5432649281f5eb 216 Pfam PF09976 Tetratricopeptide repeat-like domain 15 204 1.0E-59 T 17-10-2018 IPR018704 Tetratricopeptide repeat-like domain Reactome: R-HSA-192823|Reactome: R-HSA-381038|Reactome: R-HSA-381426|Reactome: R-HSA-6798695|Reactome: R-HSA-8957275 VI35_12280 2e9ff9e2e34ec3fd1b5432649281f5eb 216 SUPERFAMILY SSF48452 91 186 2.5E-7 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_12280 2e9ff9e2e34ec3fd1b5432649281f5eb 216 Gene3D G3DSA:1.25.40.10 39 188 2.5E-7 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_12280 2e9ff9e2e34ec3fd1b5432649281f5eb 216 PIRSF PIRSF006170 1 208 1.5E-54 T 17-10-2018 IPR026039 Uncharacterised protein family UPF0070 VI35_09475 b1790f25aff89202159fe9498c7b7cb8 290 Gene3D G3DSA:3.40.50.261 124 288 2.7E-76 T 17-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 VI35_09475 b1790f25aff89202159fe9498c7b7cb8 290 Gene3D G3DSA:3.40.50.720 1 123 4.9E-52 T 17-10-2018 VI35_09475 b1790f25aff89202159fe9498c7b7cb8 290 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 2.6E-39 T 17-10-2018 VI35_09475 b1790f25aff89202159fe9498c7b7cb8 290 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 2.6E-39 T 17-10-2018 VI35_09475 b1790f25aff89202159fe9498c7b7cb8 290 PRINTS PR01798 Succinyl-CoA synthase signature 240 257 2.6E-39 T 17-10-2018 VI35_09475 b1790f25aff89202159fe9498c7b7cb8 290 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 2.6E-39 T 17-10-2018 VI35_09475 b1790f25aff89202159fe9498c7b7cb8 290 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 288 43.242 T 17-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 VI35_09475 b1790f25aff89202159fe9498c7b7cb8 290 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 236 249 - T 17-10-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site VI35_09475 b1790f25aff89202159fe9498c7b7cb8 290 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 4 287 5.1E-145 T 17-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 VI35_09475 b1790f25aff89202159fe9498c7b7cb8 290 SUPERFAMILY SSF51735 1 122 1.55E-43 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_09475 b1790f25aff89202159fe9498c7b7cb8 290 Pfam PF02629 CoA binding domain 6 99 7.8E-32 T 17-10-2018 IPR003781 CoA-binding GO:0048037 VI35_09475 b1790f25aff89202159fe9498c7b7cb8 290 PIRSF PIRSF001553 1 289 6.6E-135 T 17-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 VI35_09475 b1790f25aff89202159fe9498c7b7cb8 290 Pfam PF00549 CoA-ligase 151 270 1.5E-20 T 17-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 VI35_09475 b1790f25aff89202159fe9498c7b7cb8 290 SMART SM00881 4 100 3.2E-37 T 17-10-2018 IPR003781 CoA-binding GO:0048037 VI35_09475 b1790f25aff89202159fe9498c7b7cb8 290 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 17-10-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site VI35_09475 b1790f25aff89202159fe9498c7b7cb8 290 SUPERFAMILY SSF52210 123 286 2.22E-57 T 17-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 VI35_16510 940ab6bfa8fdd680ab1d5c17771730b6 270 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 41 68 - T 17-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 VI35_16510 940ab6bfa8fdd680ab1d5c17771730b6 270 Gene3D G3DSA:3.40.50.150 1 199 4.2E-65 T 17-10-2018 VI35_16510 940ab6bfa8fdd680ab1d5c17771730b6 270 SUPERFAMILY SSF53335 17 266 4.8E-76 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_16510 940ab6bfa8fdd680ab1d5c17771730b6 270 Pfam PF00398 Ribosomal RNA adenine dimethylase 9 265 2.9E-75 T 17-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm VI35_16510 940ab6bfa8fdd680ab1d5c17771730b6 270 Gene3D G3DSA:1.10.8.100 201 265 1.6E-22 T 17-10-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 VI35_16510 940ab6bfa8fdd680ab1d5c17771730b6 270 SMART SM00650 25 198 3.6E-82 T 17-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 VI35_16510 940ab6bfa8fdd680ab1d5c17771730b6 270 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 10 264 1.1E-86 T 17-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 VI35_16510 940ab6bfa8fdd680ab1d5c17771730b6 270 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 9 265 55.739 T 17-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 VI35_19920 94988b97bb0a4d7ba840ed6631daafc0 768 SMART SM00316 647 718 1.5E-24 T 17-10-2018 IPR022967 RNA-binding domain, S1 VI35_19920 94988b97bb0a4d7ba840ed6631daafc0 768 SUPERFAMILY SSF53098 319 467 8.34E-52 T 17-10-2018 IPR012337 Ribonuclease H-like superfamily VI35_19920 94988b97bb0a4d7ba840ed6631daafc0 768 SUPERFAMILY SSF47781 558 630 1.8E-20 T 17-10-2018 IPR010994 RuvA domain 2-like VI35_19920 94988b97bb0a4d7ba840ed6631daafc0 768 Pfam PF12836 Helix-hairpin-helix motif 489 553 2.7E-29 T 17-10-2018 VI35_19920 94988b97bb0a4d7ba840ed6631daafc0 768 SUPERFAMILY SSF158832 6 318 2.48E-116 T 17-10-2018 VI35_19920 94988b97bb0a4d7ba840ed6631daafc0 768 Gene3D G3DSA:2.40.50.140 629 722 3.0E-28 T 17-10-2018 VI35_19920 94988b97bb0a4d7ba840ed6631daafc0 768 Pfam PF09371 Tex-like protein N-terminal domain 10 193 1.8E-67 T 17-10-2018 IPR018974 Tex-like protein, N-terminal VI35_19920 94988b97bb0a4d7ba840ed6631daafc0 768 Gene3D G3DSA:1.10.3500.10 113 496 3.9E-153 T 17-10-2018 IPR023323 Tex-like domain superfamily VI35_19920 94988b97bb0a4d7ba840ed6631daafc0 768 SUPERFAMILY SSF50249 636 720 6.49E-24 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_19920 94988b97bb0a4d7ba840ed6631daafc0 768 SMART SM00732 323 422 1.0E-33 T 17-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 VI35_19920 94988b97bb0a4d7ba840ed6631daafc0 768 Gene3D G3DSA:3.30.420.140 322 449 3.9E-153 T 17-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 VI35_19920 94988b97bb0a4d7ba840ed6631daafc0 768 Pfam PF00575 S1 RNA binding domain 650 718 3.9E-21 T 17-10-2018 IPR003029 S1 domain GO:0003676 VI35_19920 94988b97bb0a4d7ba840ed6631daafc0 768 Pfam PF16921 Tex protein YqgF-like domain 324 449 2.6E-53 T 17-10-2018 IPR032639 Tex protein, YqgF-like domain VI35_19920 94988b97bb0a4d7ba840ed6631daafc0 768 Gene3D G3DSA:1.10.150.310 497 628 5.6E-51 T 17-10-2018 VI35_19920 94988b97bb0a4d7ba840ed6631daafc0 768 SUPERFAMILY SSF47781 468 556 2.56E-28 T 17-10-2018 IPR010994 RuvA domain 2-like VI35_19920 94988b97bb0a4d7ba840ed6631daafc0 768 Gene3D G3DSA:1.10.10.650 3 110 1.5E-40 T 17-10-2018 IPR023319 Tex-like protein, HTH domain superfamily VI35_18830 b0ce7aef7718b8757f2f96fcfcbd1a28 401 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 193 400 8.5E-59 T 17-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 VI35_18830 b0ce7aef7718b8757f2f96fcfcbd1a28 401 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 8 82 1.6E-16 T 17-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 VI35_18830 b0ce7aef7718b8757f2f96fcfcbd1a28 401 Pfam PF07670 Nucleoside recognition 92 189 3.0E-6 T 17-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 VI35_18205 757e5446cb2a5df1c359b915be2384f1 305 Pfam PF13737 Transposase DDE domain 19 130 2.7E-38 T 17-10-2018 IPR025668 Transposase DDE domain VI35_13240 757e5446cb2a5df1c359b915be2384f1 305 Pfam PF13737 Transposase DDE domain 19 130 2.7E-38 T 17-10-2018 IPR025668 Transposase DDE domain VI35_08500 757e5446cb2a5df1c359b915be2384f1 305 Pfam PF13737 Transposase DDE domain 19 130 2.7E-38 T 17-10-2018 IPR025668 Transposase DDE domain VI35_09105 757e5446cb2a5df1c359b915be2384f1 305 Pfam PF13737 Transposase DDE domain 19 130 2.7E-38 T 17-10-2018 IPR025668 Transposase DDE domain VI35_14995 757e5446cb2a5df1c359b915be2384f1 305 Pfam PF13737 Transposase DDE domain 19 130 2.7E-38 T 17-10-2018 IPR025668 Transposase DDE domain VI35_19205 757e5446cb2a5df1c359b915be2384f1 305 Pfam PF13737 Transposase DDE domain 19 130 2.7E-38 T 17-10-2018 IPR025668 Transposase DDE domain VI35_04530 09a0ac1bf8cf253f67f91993afa2bff3 176 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 4 147 8.9E-40 T 17-10-2018 IPR001453 MoaB/Mog domain VI35_04530 09a0ac1bf8cf253f67f91993afa2bff3 176 SMART SM00852 7 153 1.3E-29 T 17-10-2018 IPR001453 MoaB/Mog domain VI35_04530 09a0ac1bf8cf253f67f91993afa2bff3 176 Gene3D G3DSA:3.40.980.10 1 176 9.2E-66 T 17-10-2018 IPR036425 MoaB/Mog-like domain superfamily VI35_04530 09a0ac1bf8cf253f67f91993afa2bff3 176 SUPERFAMILY SSF53218 4 169 3.27E-47 T 17-10-2018 IPR036425 MoaB/Mog-like domain superfamily VI35_04530 09a0ac1bf8cf253f67f91993afa2bff3 176 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 69 82 - T 17-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 VI35_04530 09a0ac1bf8cf253f67f91993afa2bff3 176 Pfam PF00994 Probable molybdopterin binding domain 7 151 1.1E-31 T 17-10-2018 IPR001453 MoaB/Mog domain VI35_18370 16ce1e91024eab42e4d73ef038add6a2 122 Gene3D G3DSA:3.10.180.10 6 122 6.1E-18 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_18370 16ce1e91024eab42e4d73ef038add6a2 122 SUPERFAMILY SSF54593 12 121 2.15E-22 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_18370 16ce1e91024eab42e4d73ef038add6a2 122 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 12 117 1.5E-5 T 17-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VI35_04895 6290707dac30a056806a5fa0a917bdaf 144 Gene3D G3DSA:3.30.300.20 1 108 1.2E-40 T 17-10-2018 IPR015946 K homology domain-like, alpha/beta VI35_04895 6290707dac30a056806a5fa0a917bdaf 144 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 1 117 9.8E-41 T 17-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 VI35_04895 6290707dac30a056806a5fa0a917bdaf 144 ProSitePatterns PS01319 Ribosome-binding factor A signature. 79 100 - T 17-10-2018 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 VI35_04895 6290707dac30a056806a5fa0a917bdaf 144 SUPERFAMILY SSF89919 2 107 2.22E-34 T 17-10-2018 IPR023799 Ribosome-binding factor A domain superfamily VI35_04895 6290707dac30a056806a5fa0a917bdaf 144 Pfam PF02033 Ribosome-binding factor A 7 112 2.1E-32 T 17-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 VI35_04895 6290707dac30a056806a5fa0a917bdaf 144 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 6 113 27.373 T 17-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 VI35_04895 6290707dac30a056806a5fa0a917bdaf 144 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 10 100 5.0E-34 T 17-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 VI35_11040 ebb40f10749ff61ef13256399925500b 509 SUPERFAMILY SSF52540 9 235 1.38E-59 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_11040 ebb40f10749ff61ef13256399925500b 509 SUPERFAMILY SSF52540 271 487 1.41E-47 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_11040 ebb40f10749ff61ef13256399925500b 509 Gene3D G3DSA:3.40.50.300 2 253 1.1E-59 T 17-10-2018 VI35_11040 ebb40f10749ff61ef13256399925500b 509 ProSitePatterns PS00211 ABC transporters family signature. 401 415 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_11040 ebb40f10749ff61ef13256399925500b 509 SMART SM00382 283 477 2.6E-8 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_11040 ebb40f10749ff61ef13256399925500b 509 SMART SM00382 35 224 4.5E-9 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_11040 ebb40f10749ff61ef13256399925500b 509 Pfam PF00005 ABC transporter 275 428 3.1E-22 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_11040 ebb40f10749ff61ef13256399925500b 509 Pfam PF00005 ABC transporter 26 175 1.4E-30 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_11040 ebb40f10749ff61ef13256399925500b 509 Gene3D G3DSA:3.40.50.300 262 509 1.7E-47 T 17-10-2018 VI35_12190 7484091e0f34dc45f655e1e0802c11da 224 Gene3D G3DSA:3.40.50.12280 23 191 3.4E-67 T 17-10-2018 VI35_12190 7484091e0f34dc45f655e1e0802c11da 224 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 76 174 2.4E-20 T 17-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12190 7484091e0f34dc45f655e1e0802c11da 224 SUPERFAMILY SSF56770 43 189 2.88E-62 T 17-10-2018 VI35_12190 7484091e0f34dc45f655e1e0802c11da 224 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 46 182 6.1E-67 T 17-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12190 7484091e0f34dc45f655e1e0802c11da 224 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 148 164 - T 17-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12190 7484091e0f34dc45f655e1e0802c11da 224 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 27 181 41.718 T 17-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_20845 a4d791cba46b0bb1c14369a252bb72e1 334 Gene3D G3DSA:3.40.50.2300 69 322 1.5E-87 T 17-10-2018 VI35_20845 a4d791cba46b0bb1c14369a252bb72e1 334 Gene3D G3DSA:3.40.50.2300 161 323 1.5E-87 T 17-10-2018 VI35_20845 a4d791cba46b0bb1c14369a252bb72e1 334 SUPERFAMILY SSF47413 1 59 2.68E-18 T 17-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VI35_20845 a4d791cba46b0bb1c14369a252bb72e1 334 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 6.9E-20 T 17-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VI35_20845 a4d791cba46b0bb1c14369a252bb72e1 334 SMART SM00354 1 71 7.1E-35 T 17-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VI35_20845 a4d791cba46b0bb1c14369a252bb72e1 334 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 17-10-2018 VI35_20845 a4d791cba46b0bb1c14369a252bb72e1 334 Pfam PF13377 Periplasmic binding protein-like domain 169 330 4.6E-40 T 17-10-2018 VI35_20845 a4d791cba46b0bb1c14369a252bb72e1 334 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 1.0E-5 T 17-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VI35_20845 a4d791cba46b0bb1c14369a252bb72e1 334 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 1.0E-5 T 17-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VI35_20845 a4d791cba46b0bb1c14369a252bb72e1 334 Gene3D G3DSA:1.10.260.40 3 59 4.2E-24 T 17-10-2018 VI35_20845 a4d791cba46b0bb1c14369a252bb72e1 334 SUPERFAMILY SSF53822 60 331 1.68E-90 T 17-10-2018 IPR028082 Periplasmic binding protein-like I VI35_01345 5367c639ced9e16b6089b3841eb616df 92 SUPERFAMILY SSF75169 3 90 2.65E-17 T 17-10-2018 IPR027396 DsrEFH-like VI35_01345 5367c639ced9e16b6089b3841eb616df 92 Pfam PF04077 DsrH like protein 8 84 1.8E-15 T 17-10-2018 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 VI35_01345 5367c639ced9e16b6089b3841eb616df 92 TIGRFAM TIGR03011 sulf_tusB_dsrH: sulfur relay protein TusB/DsrH 3 90 2.5E-20 T 17-10-2018 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 VI35_01345 5367c639ced9e16b6089b3841eb616df 92 Gene3D G3DSA:3.40.1260.10 1 90 5.6E-16 T 17-10-2018 IPR027396 DsrEFH-like VI35_16140 7d4f4b2967418568785697c662730cbd 317 Gene3D G3DSA:3.40.190.10 89 289 5.7E-53 T 17-10-2018 VI35_16140 7d4f4b2967418568785697c662730cbd 317 SUPERFAMILY SSF53850 87 290 5.25E-37 T 17-10-2018 VI35_16140 7d4f4b2967418568785697c662730cbd 317 Gene3D G3DSA:3.40.190.10 167 265 5.7E-53 T 17-10-2018 VI35_16140 7d4f4b2967418568785697c662730cbd 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 3.3E-17 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_16140 7d4f4b2967418568785697c662730cbd 317 Gene3D G3DSA:1.10.10.10 1 85 6.5E-24 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_16140 7d4f4b2967418568785697c662730cbd 317 SUPERFAMILY SSF46785 4 83 4.82E-18 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_16140 7d4f4b2967418568785697c662730cbd 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 2.9E-8 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_16140 7d4f4b2967418568785697c662730cbd 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 2.9E-8 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_16140 7d4f4b2967418568785697c662730cbd 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 2.9E-8 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_16140 7d4f4b2967418568785697c662730cbd 317 Pfam PF03466 LysR substrate binding domain 94 289 1.3E-20 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_20695 828c1210ac12a025c252b251e2d411fd 471 SMART SM00387 367 471 4.8E-22 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_20695 828c1210ac12a025c252b251e2d411fd 471 PRINTS PR00344 Bacterial sensor protein C-terminal signature 456 469 1.2E-13 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_20695 828c1210ac12a025c252b251e2d411fd 471 PRINTS PR00344 Bacterial sensor protein C-terminal signature 401 415 1.2E-13 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_20695 828c1210ac12a025c252b251e2d411fd 471 PRINTS PR00344 Bacterial sensor protein C-terminal signature 432 450 1.2E-13 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_20695 828c1210ac12a025c252b251e2d411fd 471 PRINTS PR00344 Bacterial sensor protein C-terminal signature 419 429 1.2E-13 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_20695 828c1210ac12a025c252b251e2d411fd 471 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 371 470 3.5E-16 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_20695 828c1210ac12a025c252b251e2d411fd 471 SMART SM00304 217 269 4.1E-6 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_20695 828c1210ac12a025c252b251e2d411fd 471 SMART SM00388 270 328 6.3E-5 T 17-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VI35_20695 828c1210ac12a025c252b251e2d411fd 471 SUPERFAMILY SSF55874 328 470 3.41E-31 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_20695 828c1210ac12a025c252b251e2d411fd 471 Gene3D G3DSA:3.30.565.10 331 471 1.5E-26 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_20695 828c1210ac12a025c252b251e2d411fd 471 SUPERFAMILY SSF47384 254 316 9.22E-10 T 17-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VI35_20695 828c1210ac12a025c252b251e2d411fd 471 Gene3D G3DSA:1.10.287.130 221 328 1.4E-16 T 17-10-2018 VI35_20695 828c1210ac12a025c252b251e2d411fd 471 Pfam PF00672 HAMP domain 217 266 1.7E-7 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_05550 d56b211c6fd8c7fdf27ef0574e4b9a33 198 SUPERFAMILY SSF53178 5 194 3.27E-70 T 17-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 VI35_05550 d56b211c6fd8c7fdf27ef0574e4b9a33 198 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 5 184 35.81 T 17-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 VI35_05550 d56b211c6fd8c7fdf27ef0574e4b9a33 198 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 112 122 - T 17-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 VI35_05550 d56b211c6fd8c7fdf27ef0574e4b9a33 198 Pfam PF01195 Peptidyl-tRNA hydrolase 7 190 6.4E-55 T 17-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 VI35_05550 d56b211c6fd8c7fdf27ef0574e4b9a33 198 Gene3D G3DSA:3.40.50.1470 1 196 1.8E-72 T 17-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 VI35_05550 d56b211c6fd8c7fdf27ef0574e4b9a33 198 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 18 31 - T 17-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 VI35_05550 d56b211c6fd8c7fdf27ef0574e4b9a33 198 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 5 192 5.5E-69 T 17-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 VI35_11815 5ec529ba80788b7379a042b65ab4620a 306 SUPERFAMILY SSF56601 5 284 2.53E-58 T 17-10-2018 IPR012338 Beta-lactamase/transpeptidase-like VI35_11815 5ec529ba80788b7379a042b65ab4620a 306 Gene3D G3DSA:3.40.710.10 19 302 1.8E-66 T 17-10-2018 VI35_11815 5ec529ba80788b7379a042b65ab4620a 306 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 46 268 5.9E-56 T 17-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 VI35_11815 5ec529ba80788b7379a042b65ab4620a 306 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 75 86 7.7E-13 T 17-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 VI35_11815 5ec529ba80788b7379a042b65ab4620a 306 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 125 142 7.7E-13 T 17-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 VI35_11815 5ec529ba80788b7379a042b65ab4620a 306 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 152 165 7.7E-13 T 17-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 VI35_17665 c8cae0299168a2619a50f9e4d8754310 97 Gene3D G3DSA:2.30.33.40 1 97 4.2E-35 T 17-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 VI35_17665 c8cae0299168a2619a50f9e4d8754310 97 Pfam PF00166 Chaperonin 10 Kd subunit 2 95 3.0E-29 T 17-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 VI35_17665 c8cae0299168a2619a50f9e4d8754310 97 SMART SM00883 2 95 3.1E-48 T 17-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 VI35_17665 c8cae0299168a2619a50f9e4d8754310 97 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 17-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 VI35_17665 c8cae0299168a2619a50f9e4d8754310 97 Hamap MF_00580 10 kDa chaperonin [groS]. 2 96 24.136 T 17-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 VI35_17665 c8cae0299168a2619a50f9e4d8754310 97 PRINTS PR00297 10kDa chaperonin signature 25 46 1.3E-28 T 17-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 VI35_17665 c8cae0299168a2619a50f9e4d8754310 97 PRINTS PR00297 10kDa chaperonin signature 3 18 1.3E-28 T 17-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 VI35_17665 c8cae0299168a2619a50f9e4d8754310 97 PRINTS PR00297 10kDa chaperonin signature 82 95 1.3E-28 T 17-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 VI35_17665 c8cae0299168a2619a50f9e4d8754310 97 PRINTS PR00297 10kDa chaperonin signature 60 72 1.3E-28 T 17-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 VI35_17665 c8cae0299168a2619a50f9e4d8754310 97 SUPERFAMILY SSF50129 1 96 2.59E-30 T 17-10-2018 IPR011032 GroES-like superfamily VI35_19850 351a8124e6a95dcf4d8d98f5d2c68db7 63 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 18.366 T 17-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19850 351a8124e6a95dcf4d8d98f5d2c68db7 63 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 5.2E-23 T 17-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19850 351a8124e6a95dcf4d8d98f5d2c68db7 63 ProSitePatterns PS00579 Ribosomal protein L29 signature. 39 53 - T 17-10-2018 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19850 351a8124e6a95dcf4d8d98f5d2c68db7 63 SUPERFAMILY SSF46561 1 61 6.67E-22 T 17-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19850 351a8124e6a95dcf4d8d98f5d2c68db7 63 Gene3D G3DSA:1.10.287.310 1 63 4.3E-30 T 17-10-2018 VI35_19850 351a8124e6a95dcf4d8d98f5d2c68db7 63 Pfam PF00831 Ribosomal L29 protein 4 60 1.1E-23 T 17-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_09580 6da3b3b2d557ea23a3ec4f29fc80e69a 750 Gene3D G3DSA:1.10.8.60 650 749 8.9E-31 T 17-10-2018 VI35_09580 6da3b3b2d557ea23a3ec4f29fc80e69a 750 Gene3D G3DSA:1.10.1780.10 1 143 4.6E-44 T 17-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 VI35_09580 6da3b3b2d557ea23a3ec4f29fc80e69a 750 SUPERFAMILY SSF52540 166 418 1.82E-64 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_09580 6da3b3b2d557ea23a3ec4f29fc80e69a 750 Gene3D G3DSA:3.40.50.300 153 347 3.6E-62 T 17-10-2018 VI35_09580 6da3b3b2d557ea23a3ec4f29fc80e69a 750 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 299 311 - T 17-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 VI35_09580 6da3b3b2d557ea23a3ec4f29fc80e69a 750 Pfam PF07724 AAA domain (Cdc48 subfamily) 483 643 1.3E-48 T 17-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VI35_09580 6da3b3b2d557ea23a3ec4f29fc80e69a 750 SUPERFAMILY SSF52540 434 729 1.26E-75 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_09580 6da3b3b2d557ea23a3ec4f29fc80e69a 750 Gene3D G3DSA:3.40.50.300 436 649 4.2E-78 T 17-10-2018 VI35_09580 6da3b3b2d557ea23a3ec4f29fc80e69a 750 SMART SM01086 650 739 4.6E-36 T 17-10-2018 IPR019489 Clp ATPase, C-terminal VI35_09580 6da3b3b2d557ea23a3ec4f29fc80e69a 750 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 208 297 2.1E-11 T 17-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VI35_09580 6da3b3b2d557ea23a3ec4f29fc80e69a 750 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 3 731 0.0 T 17-10-2018 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0016887|GO:0043335 VI35_09580 6da3b3b2d557ea23a3ec4f29fc80e69a 750 SUPERFAMILY SSF81923 1 142 7.19E-59 T 17-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 VI35_09580 6da3b3b2d557ea23a3ec4f29fc80e69a 750 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 530 548 3.1E-36 T 17-10-2018 IPR001270 ClpA/B family GO:0005524 VI35_09580 6da3b3b2d557ea23a3ec4f29fc80e69a 750 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 592 606 3.1E-36 T 17-10-2018 IPR001270 ClpA/B family GO:0005524 VI35_09580 6da3b3b2d557ea23a3ec4f29fc80e69a 750 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 488 506 3.1E-36 T 17-10-2018 IPR001270 ClpA/B family GO:0005524 VI35_09580 6da3b3b2d557ea23a3ec4f29fc80e69a 750 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 559 577 3.1E-36 T 17-10-2018 IPR001270 ClpA/B family GO:0005524 VI35_09580 6da3b3b2d557ea23a3ec4f29fc80e69a 750 Gene3D G3DSA:1.10.8.60 348 435 4.7E-33 T 17-10-2018 VI35_09580 6da3b3b2d557ea23a3ec4f29fc80e69a 750 SMART SM00382 203 349 3.7E-11 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_09580 6da3b3b2d557ea23a3ec4f29fc80e69a 750 SMART SM00382 484 651 1.9E-8 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_09580 6da3b3b2d557ea23a3ec4f29fc80e69a 750 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 13 62 9.9E-13 T 17-10-2018 IPR004176 Clp, N-terminal VI35_09580 6da3b3b2d557ea23a3ec4f29fc80e69a 750 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 515 533 - T 17-10-2018 IPR028299 ClpA/B, conserved site 2 VI35_09580 6da3b3b2d557ea23a3ec4f29fc80e69a 750 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 650 730 5.5E-24 T 17-10-2018 IPR019489 Clp ATPase, C-terminal VI35_03270 12ebd3e521617d75419af621b4fb5854 195 Gene3D G3DSA:1.10.10.880 2 67 7.1E-26 T 17-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 VI35_03270 12ebd3e521617d75419af621b4fb5854 195 PIRSF PIRSF016938 1 192 3.3E-37 T 17-10-2018 IPR026279 Sigma-E factor negative regulatory protein RseA GO:0016989 VI35_03270 12ebd3e521617d75419af621b4fb5854 195 Pfam PF03872 Anti sigma-E protein RseA, N-terminal domain 1 82 1.0E-27 T 17-10-2018 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 VI35_03270 12ebd3e521617d75419af621b4fb5854 195 Pfam PF03873 Anti sigma-E protein RseA, C-terminal domain 129 187 1.0E-22 T 17-10-2018 IPR005573 Anti sigma-E protein RseA, C-terminal VI35_03270 12ebd3e521617d75419af621b4fb5854 195 SUPERFAMILY SSF89069 4 67 1.57E-19 T 17-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 VI35_04450 0e202f32663b16e462e947780dda6d2a 143 PRINTS PR01438 Universal stress protein signature 120 142 2.4E-20 T 17-10-2018 IPR006015 Universal stress protein A VI35_04450 0e202f32663b16e462e947780dda6d2a 143 PRINTS PR01438 Universal stress protein signature 102 114 2.4E-20 T 17-10-2018 IPR006015 Universal stress protein A VI35_04450 0e202f32663b16e462e947780dda6d2a 143 PRINTS PR01438 Universal stress protein signature 4 22 2.4E-20 T 17-10-2018 IPR006015 Universal stress protein A VI35_04450 0e202f32663b16e462e947780dda6d2a 143 Pfam PF00582 Universal stress protein family 4 142 6.6E-34 T 17-10-2018 IPR006016 UspA VI35_04450 0e202f32663b16e462e947780dda6d2a 143 Gene3D G3DSA:3.40.50.620 1 143 5.7E-42 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_04450 0e202f32663b16e462e947780dda6d2a 143 SUPERFAMILY SSF52402 5 142 1.34E-40 T 17-10-2018 VI35_04450 0e202f32663b16e462e947780dda6d2a 143 PIRSF PIRSF006276 3 143 6.3E-25 T 17-10-2018 IPR006015 Universal stress protein A VI35_16505 ffcc28e6c83ff6801fcb608f339a80c0 331 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 32 320 6.0E-111 T 17-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 VI35_16505 ffcc28e6c83ff6801fcb608f339a80c0 331 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 3 327 37.306 T 17-10-2018 IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase GO:0042823|GO:0050570 KEGG: 00750+1.1.1.262 VI35_16505 ffcc28e6c83ff6801fcb608f339a80c0 331 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 5 324 8.6E-133 T 17-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 VI35_16505 ffcc28e6c83ff6801fcb608f339a80c0 331 Gene3D G3DSA:3.40.718.10 2 329 1.9E-130 T 17-10-2018 VI35_16505 ffcc28e6c83ff6801fcb608f339a80c0 331 SUPERFAMILY SSF53659 5 326 1.58E-117 T 17-10-2018 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SUPERFAMILY SSF49313 808 905 1.83E-15 T 17-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SUPERFAMILY SSF49313 911 1010 5.23E-16 T 17-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SUPERFAMILY SSF49313 1530 1628 9.29E-15 T 17-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 Gene3D G3DSA:2.60.40.60 1539 1631 6.1E-17 T 17-10-2018 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SMART SM00112 1335 1430 2.7E-9 T 17-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SMART SM00112 1438 1533 4.7E-10 T 17-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SMART SM00112 1784 1860 4.3E-11 T 17-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SMART SM00112 511 606 2.6E-8 T 17-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SMART SM00112 614 709 4.1E-8 T 17-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SMART SM00112 820 915 2.9E-10 T 17-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SMART SM00112 1026 1121 3.0E-8 T 17-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SMART SM00112 1129 1224 1.6E-10 T 17-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SMART SM00112 427 503 8.3E-10 T 17-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SMART SM00112 717 812 3.7E-9 T 17-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SMART SM00112 1232 1327 1.3E-10 T 17-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SMART SM00112 1541 1636 1.5E-9 T 17-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SMART SM00112 1884 1963 1.8E-9 T 17-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SMART SM00112 923 1018 2.2E-9 T 17-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SUPERFAMILY SSF49313 603 701 2.09E-12 T 17-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 Gene3D G3DSA:2.60.40.60 403 497 2.3E-13 T 17-10-2018 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SUPERFAMILY SSF49313 403 505 7.07E-13 T 17-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SUPERFAMILY SSF49313 499 598 3.01E-15 T 17-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SUPERFAMILY SSF49313 1221 1319 7.72E-15 T 17-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SUPERFAMILY SSF49313 1760 1862 1.83E-13 T 17-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 Pfam PF00028 Cadherin domain 720 805 6.2E-10 T 17-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 Pfam PF00028 Cadherin domain 1543 1629 6.9E-12 T 17-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 Pfam PF00028 Cadherin domain 513 599 4.2E-11 T 17-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 Pfam PF00028 Cadherin domain 1337 1423 5.3E-12 T 17-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 Pfam PF00028 Cadherin domain 1773 1853 2.4E-9 T 17-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 Pfam PF00028 Cadherin domain 1028 1114 1.9E-10 T 17-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 Pfam PF00028 Cadherin domain 1441 1525 2.7E-10 T 17-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 Pfam PF00028 Cadherin domain 822 908 1.6E-11 T 17-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 Pfam PF00028 Cadherin domain 925 1011 1.7E-11 T 17-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 Pfam PF00028 Cadherin domain 616 702 3.5E-9 T 17-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 Pfam PF00028 Cadherin domain 1131 1217 3.3E-11 T 17-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 Pfam PF00028 Cadherin domain 1870 1956 2.9E-13 T 17-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 Pfam PF00028 Cadherin domain 1234 1320 1.8E-11 T 17-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SUPERFAMILY SSF49313 1856 1955 1.83E-17 T 17-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 Gene3D G3DSA:2.60.40.60 1119 1221 5.4E-16 T 17-10-2018 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 Gene3D G3DSA:2.60.40.60 1016 1118 2.9E-16 T 17-10-2018 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 Gene3D G3DSA:2.60.40.60 1222 1325 5.5E-16 T 17-10-2018 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 Gene3D G3DSA:2.60.40.60 913 1015 1.2E-17 T 17-10-2018 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 Gene3D G3DSA:2.60.40.60 604 708 2.2E-14 T 17-10-2018 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 Gene3D G3DSA:2.60.40.60 1856 1964 6.4E-19 T 17-10-2018 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 Gene3D G3DSA:2.60.40.60 498 603 5.7E-17 T 17-10-2018 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 Gene3D G3DSA:2.60.40.60 1326 1427 5.7E-17 T 17-10-2018 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 Gene3D G3DSA:2.60.40.60 1428 1532 3.3E-15 T 17-10-2018 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 Gene3D G3DSA:2.60.40.60 808 912 2.1E-17 T 17-10-2018 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SUPERFAMILY SSF49313 1015 1113 1.31E-14 T 17-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SUPERFAMILY SSF49313 708 814 9.16E-13 T 17-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SMART SM00736 504 605 0.11 T 17-10-2018 IPR006644 Dystroglycan-type cadherin-like GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SMART SM00736 1328 1429 0.1 T 17-10-2018 IPR006644 Dystroglycan-type cadherin-like GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SMART SM00736 607 708 0.22 T 17-10-2018 IPR006644 Dystroglycan-type cadherin-like GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SMART SM00736 813 914 0.12 T 17-10-2018 IPR006644 Dystroglycan-type cadherin-like GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SMART SM00736 1122 1223 0.16 T 17-10-2018 IPR006644 Dystroglycan-type cadherin-like GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SMART SM00736 1431 1532 0.22 T 17-10-2018 IPR006644 Dystroglycan-type cadherin-like GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SMART SM00736 1225 1326 0.23 T 17-10-2018 IPR006644 Dystroglycan-type cadherin-like GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 Gene3D G3DSA:2.60.40.60 711 805 1.0E-13 T 17-10-2018 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SUPERFAMILY SSF49313 1118 1216 3.01E-14 T 17-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 PRINTS PR00205 Cadherin signature 678 690 2.2E-11 T 17-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 PRINTS PR00205 Cadherin signature 867 893 2.2E-11 T 17-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 PRINTS PR00205 Cadherin signature 551 570 2.2E-11 T 17-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 PRINTS PR00205 Cadherin signature 608 637 2.2E-11 T 17-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 PRINTS PR00205 Cadherin signature 899 916 2.2E-11 T 17-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 PRINTS PR00205 Cadherin signature 793 812 2.2E-11 T 17-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SUPERFAMILY SSF49313 1427 1525 1.44E-13 T 17-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 Gene3D G3DSA:2.60.40.60 1768 1855 6.1E-15 T 17-10-2018 VI35_16005 cdfe74af8280538366b51b05b4f05051 2515 SUPERFAMILY SSF49313 1324 1422 2.22E-15 T 17-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 VI35_04860 de3d01a42c3487508c29946fe833a0b7 254 SUPERFAMILY SSF51351 4 250 1.31E-83 T 17-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_04860 de3d01a42c3487508c29946fe833a0b7 254 Pfam PF00121 Triosephosphate isomerase 7 247 1.4E-86 T 17-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_04860 de3d01a42c3487508c29946fe833a0b7 254 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 4 249 55.816 T 17-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_04860 de3d01a42c3487508c29946fe833a0b7 254 Gene3D G3DSA:3.20.20.70 1 254 8.5E-92 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_04860 de3d01a42c3487508c29946fe833a0b7 254 ProSitePatterns PS00171 Triosephosphate isomerase active site. 166 176 - T 17-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_04860 de3d01a42c3487508c29946fe833a0b7 254 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 7 239 6.3E-63 T 17-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_06360 427a0ce0dda14beefb4169e16c0ce43c 362 TIGRFAM TIGR00433 bioB: biotin synthase 23 318 7.1E-127 T 17-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 VI35_06360 427a0ce0dda14beefb4169e16c0ce43c 362 Pfam PF04055 Radical SAM superfamily 58 206 1.6E-15 T 17-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VI35_06360 427a0ce0dda14beefb4169e16c0ce43c 362 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 228 318 3.6E-20 T 17-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 VI35_06360 427a0ce0dda14beefb4169e16c0ce43c 362 SMART SM00876 228 320 1.7E-49 T 17-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 VI35_06360 427a0ce0dda14beefb4169e16c0ce43c 362 SMART SM00729 51 263 2.8E-40 T 17-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 VI35_06360 427a0ce0dda14beefb4169e16c0ce43c 362 Hamap MF_01694 Biotin synthase [bioB]. 13 321 42.265 T 17-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 VI35_06360 427a0ce0dda14beefb4169e16c0ce43c 362 PIRSF PIRSF001619 2 327 3.6E-137 T 17-10-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 VI35_06360 427a0ce0dda14beefb4169e16c0ce43c 362 Gene3D G3DSA:3.20.20.70 12 323 1.1E-134 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_06360 427a0ce0dda14beefb4169e16c0ce43c 362 SUPERFAMILY SSF102114 13 323 1.83E-94 T 17-10-2018 VI35_12820 1d1daf4cd53e340fc20ef465aef3d971 150 Gene3D G3DSA:3.10.180.10 1 119 1.4E-27 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_12820 1d1daf4cd53e340fc20ef465aef3d971 150 SUPERFAMILY SSF54593 2 124 1.93E-18 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_15765 8b57ec129f0d6935f45a457519bd3258 467 Gene3D G3DSA:1.20.1250.20 268 465 3.4E-9 T 17-10-2018 VI35_15765 8b57ec129f0d6935f45a457519bd3258 467 SUPERFAMILY SSF103473 27 457 8.11E-35 T 17-10-2018 IPR036259 MFS transporter superfamily VI35_15765 8b57ec129f0d6935f45a457519bd3258 467 Pfam PF13000 Acetyl-coenzyme A transporter 1 31 120 5.2E-11 T 17-10-2018 IPR024371 Acetyl-coenzyme A transporter 1-like GO:0008521|GO:0016021 Reactome: R-HSA-425397|Reactome: R-HSA-5619061 VI35_15765 8b57ec129f0d6935f45a457519bd3258 467 Gene3D G3DSA:1.20.1250.20 24 227 3.3E-11 T 17-10-2018 VI35_19820 bddfe17662fd23a0689125adf2cd0dc9 130 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 130 31.68 T 17-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19820 bddfe17662fd23a0689125adf2cd0dc9 130 ProSitePatterns PS00053 Ribosomal protein S8 signature. 100 117 - T 17-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19820 bddfe17662fd23a0689125adf2cd0dc9 130 Pfam PF00410 Ribosomal protein S8 5 129 1.8E-47 T 17-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19820 bddfe17662fd23a0689125adf2cd0dc9 130 Gene3D G3DSA:3.30.1370.30 2 72 6.6E-28 T 17-10-2018 VI35_19820 bddfe17662fd23a0689125adf2cd0dc9 130 Gene3D G3DSA:3.30.1490.10 74 130 5.2E-24 T 17-10-2018 VI35_19820 bddfe17662fd23a0689125adf2cd0dc9 130 SUPERFAMILY SSF56047 5 129 7.19E-46 T 17-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_10700 8aa8d203d4e1510c4f87219af42b78fb 345 Pfam PF02769 AIR synthase related protein, C-terminal domain 167 339 2.0E-31 T 17-10-2018 IPR010918 PurM-like, C-terminal domain VI35_10700 8aa8d203d4e1510c4f87219af42b78fb 345 Hamap MF_00625 Selenide, water dikinase [selD]. 3 344 45.014 T 17-10-2018 IPR023061 Selenophosphate synthetase, class I GO:0004756|GO:0005524|GO:0016260 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 VI35_10700 8aa8d203d4e1510c4f87219af42b78fb 345 Gene3D G3DSA:3.90.650.10 162 344 1.2E-54 T 17-10-2018 IPR036676 PurM-like, C-terminal domain superfamily VI35_10700 8aa8d203d4e1510c4f87219af42b78fb 345 SUPERFAMILY SSF55326 5 156 1.96E-40 T 17-10-2018 IPR036921 PurM-like, N-terminal domain superfamily VI35_10700 8aa8d203d4e1510c4f87219af42b78fb 345 SUPERFAMILY SSF56042 163 336 7.18E-55 T 17-10-2018 IPR036676 PurM-like, C-terminal domain superfamily VI35_10700 8aa8d203d4e1510c4f87219af42b78fb 345 TIGRFAM TIGR00476 selD: selenide, water dikinase 5 311 7.8E-138 T 17-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 VI35_10700 8aa8d203d4e1510c4f87219af42b78fb 345 Pfam PF00586 AIR synthase related protein, N-terminal domain 48 155 1.2E-18 T 17-10-2018 IPR016188 PurM-like, N-terminal domain VI35_10700 8aa8d203d4e1510c4f87219af42b78fb 345 PIRSF PIRSF036407 1 344 8.2E-118 T 17-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 VI35_10700 8aa8d203d4e1510c4f87219af42b78fb 345 Gene3D G3DSA:3.30.1330.10 1 159 1.4E-48 T 17-10-2018 IPR036921 PurM-like, N-terminal domain superfamily VI35_16245 adce8f8e6afabae8f2a29b5f5fbe3fe1 464 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 19 456 1.8E-176 T 17-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 VI35_16245 adce8f8e6afabae8f2a29b5f5fbe3fe1 464 Gene3D G3DSA:3.40.50.300 176 457 1.0E-103 T 17-10-2018 VI35_16245 adce8f8e6afabae8f2a29b5f5fbe3fe1 464 Pfam PF03796 DnaB-like helicase C terminal domain 198 454 1.6E-111 T 17-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 VI35_16245 adce8f8e6afabae8f2a29b5f5fbe3fe1 464 SMART SM00382 215 421 0.0055 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_16245 adce8f8e6afabae8f2a29b5f5fbe3fe1 464 SUPERFAMILY SSF52540 196 447 4.39E-52 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_16245 adce8f8e6afabae8f2a29b5f5fbe3fe1 464 Pfam PF00772 DnaB-like helicase N terminal domain 19 120 3.9E-37 T 17-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 VI35_16245 adce8f8e6afabae8f2a29b5f5fbe3fe1 464 SUPERFAMILY SSF48024 17 128 2.48E-39 T 17-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 VI35_16245 adce8f8e6afabae8f2a29b5f5fbe3fe1 464 Gene3D G3DSA:1.10.860.10 11 175 5.2E-57 T 17-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal VI35_12340 c0d1c5bb41118503cc2f9f288d5da5ec 107 TIGRFAM TIGR02011 IscA: iron-sulfur cluster assembly protein IscA 3 107 7.8E-57 T 17-10-2018 IPR011302 Iron-binding protein IscA, proteobacteria GO:0005506|GO:0051536|GO:0097428 VI35_12340 c0d1c5bb41118503cc2f9f288d5da5ec 107 SUPERFAMILY SSF89360 1 96 6.41E-32 T 17-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 VI35_12340 c0d1c5bb41118503cc2f9f288d5da5ec 107 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 88 105 - T 17-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 VI35_12340 c0d1c5bb41118503cc2f9f288d5da5ec 107 Gene3D G3DSA:2.60.300.12 2 107 2.3E-37 T 17-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 VI35_12340 c0d1c5bb41118503cc2f9f288d5da5ec 107 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 103 1.2E-24 T 17-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 VI35_12340 c0d1c5bb41118503cc2f9f288d5da5ec 107 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 3 107 8.7E-37 T 17-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 VI35_19780 ddc5a89c6de6f65618ebfab94d181e55 118 Pfam PF00416 Ribosomal protein S13/S18 3 108 4.7E-32 T 17-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19780 ddc5a89c6de6f65618ebfab94d181e55 118 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 17-10-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19780 ddc5a89c6de6f65618ebfab94d181e55 118 Gene3D G3DSA:4.10.910.10 72 118 7.2E-26 T 17-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19780 ddc5a89c6de6f65618ebfab94d181e55 118 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 26.897 T 17-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19780 ddc5a89c6de6f65618ebfab94d181e55 118 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 2.0E-53 T 17-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_19780 ddc5a89c6de6f65618ebfab94d181e55 118 Gene3D G3DSA:1.10.8.50 1 71 3.9E-27 T 17-10-2018 VI35_19780 ddc5a89c6de6f65618ebfab94d181e55 118 PIRSF PIRSF002134 1 118 4.0E-42 T 17-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19780 ddc5a89c6de6f65618ebfab94d181e55 118 SUPERFAMILY SSF46946 2 114 2.5E-46 T 17-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 VI35_05730 93e311221ad216d79f9a9611041e621a 399 SMART SM00363 338 399 6.7E-4 T 17-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_05730 93e311221ad216d79f9a9611041e621a 399 Gene3D G3DSA:3.40.50.620 5 217 9.4E-72 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_05730 93e311221ad216d79f9a9611041e621a 399 Hamap MF_02007 Tyrosine--tRNA ligase [tyrS]. 2 398 47.26 T 17-10-2018 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 GO:0004831 KEGG: 00970+6.1.1.1 VI35_05730 93e311221ad216d79f9a9611041e621a 399 SUPERFAMILY SSF55174 298 398 1.44E-17 T 17-10-2018 VI35_05730 93e311221ad216d79f9a9611041e621a 399 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 7 399 1.5E-119 T 17-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 VI35_05730 93e311221ad216d79f9a9611041e621a 399 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 211 223 2.5E-25 T 17-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 VI35_05730 93e311221ad216d79f9a9611041e621a 399 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 178 200 2.5E-25 T 17-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 VI35_05730 93e311221ad216d79f9a9611041e621a 399 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 46 68 2.5E-25 T 17-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 VI35_05730 93e311221ad216d79f9a9611041e621a 399 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 161 176 2.5E-25 T 17-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 VI35_05730 93e311221ad216d79f9a9611041e621a 399 Pfam PF01479 S4 domain 342 382 1.6E-5 T 17-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_05730 93e311221ad216d79f9a9611041e621a 399 Gene3D G3DSA:3.10.290.10 328 398 1.5E-15 T 17-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 VI35_05730 93e311221ad216d79f9a9611041e621a 399 Gene3D G3DSA:1.10.240.10 218 327 5.4E-33 T 17-10-2018 VI35_05730 93e311221ad216d79f9a9611041e621a 399 SUPERFAMILY SSF52374 7 317 1.72E-94 T 17-10-2018 VI35_05730 93e311221ad216d79f9a9611041e621a 399 Pfam PF00579 tRNA synthetases class I (W and Y) 30 317 8.5E-73 T 17-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_05730 93e311221ad216d79f9a9611041e621a 399 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 52 - T 17-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_03540 504473667fe9cd45bc7ff8d77ff1b6dc 556 SMART SM00382 22 320 0.0034 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_03540 504473667fe9cd45bc7ff8d77ff1b6dc 556 Gene3D G3DSA:3.40.50.300 2 302 7.3E-14 T 17-10-2018 VI35_03540 504473667fe9cd45bc7ff8d77ff1b6dc 556 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 224 295 2.5E-9 T 17-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VI35_03540 504473667fe9cd45bc7ff8d77ff1b6dc 556 SUPERFAMILY SSF52540 1 298 1.57E-13 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_16480 9e0d2b6ec621d82526f9d3cc3b26de2e 274 PRINTS PR00625 DnaJ domain signature 228 243 1.3E-9 T 17-10-2018 IPR001623 DnaJ domain VI35_16480 9e0d2b6ec621d82526f9d3cc3b26de2e 274 PRINTS PR00625 DnaJ domain signature 252 272 1.3E-9 T 17-10-2018 IPR001623 DnaJ domain VI35_16480 9e0d2b6ec621d82526f9d3cc3b26de2e 274 PRINTS PR00625 DnaJ domain signature 210 228 1.3E-9 T 17-10-2018 IPR001623 DnaJ domain VI35_16480 9e0d2b6ec621d82526f9d3cc3b26de2e 274 Pfam PF00226 DnaJ domain 208 267 2.6E-12 T 17-10-2018 IPR001623 DnaJ domain VI35_16480 9e0d2b6ec621d82526f9d3cc3b26de2e 274 Hamap MF_01153 Co-chaperone protein DjlA [djlA]. 3 273 39.17 T 17-10-2018 IPR023749 Co-chaperone DjlA GO:0051087 VI35_16480 9e0d2b6ec621d82526f9d3cc3b26de2e 274 Gene3D G3DSA:1.10.3680.10 39 185 5.8E-23 T 17-10-2018 IPR029024 TerB-like VI35_16480 9e0d2b6ec621d82526f9d3cc3b26de2e 274 SUPERFAMILY SSF46565 205 268 3.14E-17 T 17-10-2018 IPR036869 Chaperone J-domain superfamily VI35_16480 9e0d2b6ec621d82526f9d3cc3b26de2e 274 Pfam PF05099 Tellurite resistance protein TerB 41 171 6.8E-15 T 17-10-2018 IPR007791 Co-chaperone DjlA, N-terminal VI35_16480 9e0d2b6ec621d82526f9d3cc3b26de2e 274 SUPERFAMILY SSF158682 12 222 3.4E-31 T 17-10-2018 IPR029024 TerB-like VI35_16480 9e0d2b6ec621d82526f9d3cc3b26de2e 274 Gene3D G3DSA:1.10.287.110 186 272 6.1E-17 T 17-10-2018 IPR036869 Chaperone J-domain superfamily VI35_16480 9e0d2b6ec621d82526f9d3cc3b26de2e 274 SMART SM00271 207 272 1.7E-17 T 17-10-2018 IPR001623 DnaJ domain VI35_12200 eba021eac2d6ebfbd80a35c6347d2d37 179 PIRSF PIRSF000216 10 179 9.5E-47 T 17-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12200 eba021eac2d6ebfbd80a35c6347d2d37 179 Gene3D G3DSA:3.40.30.10 97 179 5.1E-21 T 17-10-2018 VI35_12200 eba021eac2d6ebfbd80a35c6347d2d37 179 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 37 178 2.9E-46 T 17-10-2018 VI35_12200 eba021eac2d6ebfbd80a35c6347d2d37 179 Gene3D G3DSA:1.10.10.1590 26 96 5.1E-15 T 17-10-2018 VI35_12200 eba021eac2d6ebfbd80a35c6347d2d37 179 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 136 154 - T 17-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12200 eba021eac2d6ebfbd80a35c6347d2d37 179 SUPERFAMILY SSF52833 28 178 2.12E-45 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_12200 eba021eac2d6ebfbd80a35c6347d2d37 179 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 35 178 1.7E-44 T 17-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_18745 51e960104247e191d56e8d65347f0763 307 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 10 297 2.6E-81 T 17-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 VI35_18745 51e960104247e191d56e8d65347f0763 307 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 6 307 50.061 T 17-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 VI35_18745 51e960104247e191d56e8d65347f0763 307 PIRSF PIRSF026649 4 306 2.9E-89 T 17-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 VI35_18745 51e960104247e191d56e8d65347f0763 307 TIGRFAM TIGR02207 lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 8 306 1.8E-123 T 17-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 VI35_08515 686e3ab61b8ef8ddb3cce886db0379a3 377 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 12 32 1.3E-4 T 17-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal VI35_08515 686e3ab61b8ef8ddb3cce886db0379a3 377 SUPERFAMILY SSF56770 43 308 1.12E-85 T 17-10-2018 VI35_08515 686e3ab61b8ef8ddb3cce886db0379a3 377 Gene3D G3DSA:3.40.50.700 36 223 4.0E-69 T 17-10-2018 IPR037024 [NiFe]-hydrogenase, small subunit, N-terminal domain superfamily VI35_08515 686e3ab61b8ef8ddb3cce886db0379a3 377 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 186 209 6.8E-68 T 17-10-2018 VI35_08515 686e3ab61b8ef8ddb3cce886db0379a3 377 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 212 229 6.8E-68 T 17-10-2018 VI35_08515 686e3ab61b8ef8ddb3cce886db0379a3 377 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 230 248 6.8E-68 T 17-10-2018 VI35_08515 686e3ab61b8ef8ddb3cce886db0379a3 377 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 155 179 6.8E-68 T 17-10-2018 VI35_08515 686e3ab61b8ef8ddb3cce886db0379a3 377 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 254 280 6.8E-68 T 17-10-2018 VI35_08515 686e3ab61b8ef8ddb3cce886db0379a3 377 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 43 65 6.8E-68 T 17-10-2018 VI35_08515 686e3ab61b8ef8ddb3cce886db0379a3 377 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 66 90 6.8E-68 T 17-10-2018 VI35_08515 686e3ab61b8ef8ddb3cce886db0379a3 377 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 112 135 6.8E-68 T 17-10-2018 VI35_08515 686e3ab61b8ef8ddb3cce886db0379a3 377 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 58 205 3.9E-32 T 17-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_08515 686e3ab61b8ef8ddb3cce886db0379a3 377 Gene3D G3DSA:4.10.480.10 225 316 1.2E-30 T 17-10-2018 IPR037148 [NiFe]-hydrogenase, small subunit, C-terminal domain superfamily VI35_08515 686e3ab61b8ef8ddb3cce886db0379a3 377 Pfam PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal 225 309 1.5E-26 T 17-10-2018 IPR027394 Cytochrome-c3 hydrogenase, C-terminal VI35_08515 686e3ab61b8ef8ddb3cce886db0379a3 377 TIGRFAM TIGR00391 hydA: hydrogenase (NiFe) small subunit (hydA) 4 366 4.0E-167 T 17-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 VI35_15300 b3b4562ebd79ff2cdf4b3d06129f33aa 169 ProSitePatterns PS01087 Radical activating enzymes signature. 14 35 - T 17-10-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 VI35_15300 b3b4562ebd79ff2cdf4b3d06129f33aa 169 TIGRFAM TIGR02491 NrdG: anaerobic ribonucleoside-triphosphate reductase activating protein 3 153 2.3E-59 T 17-10-2018 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic GO:0005737|GO:0043365|GO:0051539|GO:0055114 VI35_15300 b3b4562ebd79ff2cdf4b3d06129f33aa 169 Gene3D G3DSA:3.20.20.70 2 166 3.0E-20 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_15300 b3b4562ebd79ff2cdf4b3d06129f33aa 169 PIRSF PIRSF000368 1 163 1.9E-56 T 17-10-2018 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic GO:0005737|GO:0043365|GO:0051539|GO:0055114 VI35_15300 b3b4562ebd79ff2cdf4b3d06129f33aa 169 Pfam PF13353 4Fe-4S single cluster domain 12 151 3.6E-50 T 17-10-2018 VI35_15300 b3b4562ebd79ff2cdf4b3d06129f33aa 169 SUPERFAMILY SSF102114 12 111 3.01E-7 T 17-10-2018 VI35_15470 ce24c5c909213509ea69d2dac668634f 1159 Pfam PF02811 PHP domain 8 171 1.8E-40 T 17-10-2018 IPR004013 PHP domain GO:0003824 VI35_15470 ce24c5c909213509ea69d2dac668634f 1159 Gene3D G3DSA:3.20.20.140 1 270 6.6E-90 T 17-10-2018 VI35_15470 ce24c5c909213509ea69d2dac668634f 1159 SUPERFAMILY SSF89550 6 263 8.44E-11 T 17-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 VI35_15470 ce24c5c909213509ea69d2dac668634f 1159 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 6 1030 0.0 T 17-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_15470 ce24c5c909213509ea69d2dac668634f 1159 Pfam PF14579 Helix-hairpin-helix motif 808 897 7.4E-26 T 17-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_15470 ce24c5c909213509ea69d2dac668634f 1159 SMART SM00481 7 74 1.4E-23 T 17-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal VI35_15470 ce24c5c909213509ea69d2dac668634f 1159 Gene3D G3DSA:2.40.50.140 983 1072 1.6E-7 T 17-10-2018 VI35_15470 ce24c5c909213509ea69d2dac668634f 1159 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 292 735 1.8E-176 T 17-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_15470 ce24c5c909213509ea69d2dac668634f 1159 Pfam PF01336 OB-fold nucleic acid binding domain 996 1069 1.2E-8 T 17-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 VI35_15470 ce24c5c909213509ea69d2dac668634f 1159 Gene3D G3DSA:1.10.10.1600 433 510 3.7E-34 T 17-10-2018 VI35_04740 9116be90004e2189fa9e0cbf23c0c2c2 149 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 149 90.653 T 17-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 VI35_04740 9116be90004e2189fa9e0cbf23c0c2c2 149 Pfam PF03477 ATP cone domain 50 136 4.1E-17 T 17-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 VI35_04740 9116be90004e2189fa9e0cbf23c0c2c2 149 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 147 2.6E-74 T 17-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 VI35_12425 ef140d0bc1a674fa588d84749d77a58e 528 PIRSF PIRSF000238 1 516 3.3E-256 T 17-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 VI35_12425 ef140d0bc1a674fa588d84749d77a58e 528 Gene3D G3DSA:3.40.30.80 1 198 7.0E-60 T 17-10-2018 VI35_12425 ef140d0bc1a674fa588d84749d77a58e 528 SUPERFAMILY SSF51905 197 509 1.44E-51 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_12425 ef140d0bc1a674fa588d84749d77a58e 528 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 309 327 8.3E-39 T 17-10-2018 VI35_12425 ef140d0bc1a674fa588d84749d77a58e 528 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 436 452 8.3E-39 T 17-10-2018 VI35_12425 ef140d0bc1a674fa588d84749d77a58e 528 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 463 485 8.3E-39 T 17-10-2018 VI35_12425 ef140d0bc1a674fa588d84749d77a58e 528 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 351 369 8.3E-39 T 17-10-2018 VI35_12425 ef140d0bc1a674fa588d84749d77a58e 528 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 213 232 8.3E-39 T 17-10-2018 VI35_12425 ef140d0bc1a674fa588d84749d77a58e 528 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 339 359 - T 17-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 VI35_12425 ef140d0bc1a674fa588d84749d77a58e 528 Gene3D G3DSA:3.50.50.60 321 444 2.9E-107 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_12425 ef140d0bc1a674fa588d84749d77a58e 528 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 211 485 2.9E-46 T 17-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VI35_12425 ef140d0bc1a674fa588d84749d77a58e 528 SUPERFAMILY SSF52833 103 195 1.92E-21 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_12425 ef140d0bc1a674fa588d84749d77a58e 528 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 264 274 2.0E-63 T 17-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VI35_12425 ef140d0bc1a674fa588d84749d77a58e 528 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 332 344 2.0E-63 T 17-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VI35_12425 ef140d0bc1a674fa588d84749d77a58e 528 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 438 459 2.0E-63 T 17-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VI35_12425 ef140d0bc1a674fa588d84749d77a58e 528 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 347 371 2.0E-63 T 17-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VI35_12425 ef140d0bc1a674fa588d84749d77a58e 528 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 212 234 2.0E-63 T 17-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VI35_12425 ef140d0bc1a674fa588d84749d77a58e 528 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 310 318 2.0E-63 T 17-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VI35_12425 ef140d0bc1a674fa588d84749d77a58e 528 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 244 259 2.0E-63 T 17-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VI35_12425 ef140d0bc1a674fa588d84749d77a58e 528 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 399 415 2.0E-63 T 17-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VI35_12425 ef140d0bc1a674fa588d84749d77a58e 528 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 473 491 2.0E-63 T 17-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VI35_12425 ef140d0bc1a674fa588d84749d77a58e 528 Gene3D G3DSA:3.50.50.60 211 503 2.9E-107 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_12425 ef140d0bc1a674fa588d84749d77a58e 528 TIGRFAM TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F 1 513 3.9E-243 T 17-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 VI35_12425 ef140d0bc1a674fa588d84749d77a58e 528 Pfam PF13192 Thioredoxin domain 123 193 7.7E-9 T 17-10-2018 IPR012336 Thioredoxin-like fold VI35_12425 ef140d0bc1a674fa588d84749d77a58e 528 SUPERFAMILY SSF52833 1 99 6.6E-26 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_02370 82d7d8fea7bb1f84d84fa53025c03e63 475 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 42 52 - T 17-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 VI35_02370 82d7d8fea7bb1f84d84fa53025c03e63 475 PIRSF PIRSF000350 1 469 2.9E-85 T 17-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 VI35_02370 82d7d8fea7bb1f84d84fa53025c03e63 475 Gene3D G3DSA:3.50.50.60 150 271 2.4E-123 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_02370 82d7d8fea7bb1f84d84fa53025c03e63 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 293 315 9.9E-41 T 17-10-2018 VI35_02370 82d7d8fea7bb1f84d84fa53025c03e63 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 9.9E-41 T 17-10-2018 VI35_02370 82d7d8fea7bb1f84d84fa53025c03e63 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 138 156 9.9E-41 T 17-10-2018 VI35_02370 82d7d8fea7bb1f84d84fa53025c03e63 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 177 195 9.9E-41 T 17-10-2018 VI35_02370 82d7d8fea7bb1f84d84fa53025c03e63 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 264 280 9.9E-41 T 17-10-2018 VI35_02370 82d7d8fea7bb1f84d84fa53025c03e63 475 Gene3D G3DSA:3.50.50.60 9 332 2.4E-123 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_02370 82d7d8fea7bb1f84d84fa53025c03e63 475 SUPERFAMILY SSF51905 7 381 3.5E-57 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_02370 82d7d8fea7bb1f84d84fa53025c03e63 475 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 328 3.5E-63 T 17-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VI35_02370 82d7d8fea7bb1f84d84fa53025c03e63 475 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 347 455 1.3E-34 T 17-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 VI35_02370 82d7d8fea7bb1f84d84fa53025c03e63 475 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 7 460 6.4E-148 T 17-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 VI35_02370 82d7d8fea7bb1f84d84fa53025c03e63 475 Gene3D G3DSA:3.30.390.30 346 467 2.6E-44 T 17-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 VI35_02370 82d7d8fea7bb1f84d84fa53025c03e63 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 308 315 2.1E-70 T 17-10-2018 VI35_02370 82d7d8fea7bb1f84d84fa53025c03e63 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 430 450 2.1E-70 T 17-10-2018 VI35_02370 82d7d8fea7bb1f84d84fa53025c03e63 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 265 279 2.1E-70 T 17-10-2018 VI35_02370 82d7d8fea7bb1f84d84fa53025c03e63 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 408 423 2.1E-70 T 17-10-2018 VI35_02370 82d7d8fea7bb1f84d84fa53025c03e63 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 141 150 2.1E-70 T 17-10-2018 VI35_02370 82d7d8fea7bb1f84d84fa53025c03e63 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 177 202 2.1E-70 T 17-10-2018 VI35_02370 82d7d8fea7bb1f84d84fa53025c03e63 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 343 364 2.1E-70 T 17-10-2018 VI35_02370 82d7d8fea7bb1f84d84fa53025c03e63 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 2.1E-70 T 17-10-2018 VI35_02370 82d7d8fea7bb1f84d84fa53025c03e63 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 41 56 2.1E-70 T 17-10-2018 VI35_02370 82d7d8fea7bb1f84d84fa53025c03e63 475 SUPERFAMILY SSF55424 345 461 8.08E-39 T 17-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 VI35_09250 441deb0f466b24a6610a2feaa46a382f 440 SUPERFAMILY SSF161098 188 423 7.59E-53 T 17-10-2018 IPR035906 MetI-like superfamily VI35_09250 441deb0f466b24a6610a2feaa46a382f 440 Gene3D G3DSA:1.10.3720.10 183 440 5.4E-63 T 17-10-2018 IPR035906 MetI-like superfamily VI35_09250 441deb0f466b24a6610a2feaa46a382f 440 SUPERFAMILY SSF160964 105 192 1.09E-9 T 17-10-2018 VI35_09250 441deb0f466b24a6610a2feaa46a382f 440 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 225 423 2.1E-23 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_11110 281cba985ef306911af673d56dddfb4d 118 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 30.472 T 17-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_11110 281cba985ef306911af673d56dddfb4d 118 SUPERFAMILY SSF74731 2 117 3.79E-50 T 17-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_11110 281cba985ef306911af673d56dddfb4d 118 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 2.0E-51 T 17-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_11110 281cba985ef306911af673d56dddfb4d 118 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 17-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_11110 281cba985ef306911af673d56dddfb4d 118 Gene3D G3DSA:1.10.1900.20 56 118 9.9E-29 T 17-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_11110 281cba985ef306911af673d56dddfb4d 118 PRINTS PR00062 Ribosomal protein L20 signature 75 101 1.4E-41 T 17-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_11110 281cba985ef306911af673d56dddfb4d 118 PRINTS PR00062 Ribosomal protein L20 signature 42 71 1.4E-41 T 17-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_11110 281cba985ef306911af673d56dddfb4d 118 PRINTS PR00062 Ribosomal protein L20 signature 12 41 1.4E-41 T 17-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_11110 281cba985ef306911af673d56dddfb4d 118 Gene3D G3DSA:1.10.720.90 2 55 1.9E-24 T 17-10-2018 VI35_11110 281cba985ef306911af673d56dddfb4d 118 Pfam PF00453 Ribosomal protein L20 3 109 7.5E-49 T 17-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_11110 281cba985ef306911af673d56dddfb4d 118 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 21 72 2.0E-14 T 17-10-2018 VI35_18350 e055a40bce50145cd92fc8b13156d693 204 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 7 27 - T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_18350 e055a40bce50145cd92fc8b13156d693 204 SUPERFAMILY SSF54523 9 111 1.33E-12 T 17-10-2018 VI35_18350 e055a40bce50145cd92fc8b13156d693 204 Gene3D G3DSA:3.30.700.10 9 129 2.1E-11 T 17-10-2018 VI35_18350 e055a40bce50145cd92fc8b13156d693 204 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 7 29 1.6E-6 T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_18350 e055a40bce50145cd92fc8b13156d693 204 Pfam PF07963 Prokaryotic N-terminal methylation motif 6 29 1.8E-5 T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_06595 8ce4db6d0882ca0a7f6fadc14bfc9c78 160 Gene3D G3DSA:1.10.10.10 1 158 2.4E-37 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_06595 8ce4db6d0882ca0a7f6fadc14bfc9c78 160 SUPERFAMILY SSF46785 12 156 3.23E-32 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_06595 8ce4db6d0882ca0a7f6fadc14bfc9c78 160 PRINTS PR00598 Bacterial regulatory protein MarR family signature 69 85 2.0E-12 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_06595 8ce4db6d0882ca0a7f6fadc14bfc9c78 160 PRINTS PR00598 Bacterial regulatory protein MarR family signature 105 121 2.0E-12 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_06595 8ce4db6d0882ca0a7f6fadc14bfc9c78 160 PRINTS PR00598 Bacterial regulatory protein MarR family signature 135 155 2.0E-12 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_06595 8ce4db6d0882ca0a7f6fadc14bfc9c78 160 PRINTS PR00598 Bacterial regulatory protein MarR family signature 86 101 2.0E-12 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_06595 8ce4db6d0882ca0a7f6fadc14bfc9c78 160 SMART SM00347 44 145 1.2E-25 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_06595 8ce4db6d0882ca0a7f6fadc14bfc9c78 160 Pfam PF01047 MarR family 55 109 1.4E-13 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_10510 33e2e86bdd8effa1f845f3f7b5f0f643 211 Hamap MF_01019 Histidine biosynthesis bifunctional protein HisIE [hisI]. 14 210 37.13 T 17-10-2018 IPR023019 Histidine biosynthesis bifunctional protein HisIE GO:0000105|GO:0004635|GO:0004636 KEGG: 00340+3.6.1.31+3.5.4.19 VI35_10510 33e2e86bdd8effa1f845f3f7b5f0f643 211 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 62 111 1.0E-17 T 17-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 VI35_10510 33e2e86bdd8effa1f845f3f7b5f0f643 211 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 122 205 4.0E-31 T 17-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 VI35_10510 33e2e86bdd8effa1f845f3f7b5f0f643 211 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 123 209 1.5E-17 T 17-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 VI35_10510 33e2e86bdd8effa1f845f3f7b5f0f643 211 SUPERFAMILY SSF101386 121 209 1.4E-24 T 17-10-2018 VI35_10510 33e2e86bdd8effa1f845f3f7b5f0f643 211 Gene3D G3DSA:1.10.287.1080 120 211 4.5E-30 T 17-10-2018 VI35_10510 33e2e86bdd8effa1f845f3f7b5f0f643 211 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 39 111 1.5E-30 T 17-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 VI35_10510 33e2e86bdd8effa1f845f3f7b5f0f643 211 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 119 205 19.874 T 17-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 VI35_10510 33e2e86bdd8effa1f845f3f7b5f0f643 211 Gene3D G3DSA:3.10.20.400 6 103 2.2E-33 T 17-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 VI35_10510 33e2e86bdd8effa1f845f3f7b5f0f643 211 SUPERFAMILY SSF141734 16 119 2.48E-42 T 17-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 VI35_20835 634d94649a695f873ae081c871234237 494 Gene3D G3DSA:3.40.50.360 253 395 7.0E-38 T 17-10-2018 IPR029039 Flavoprotein-like superfamily VI35_20835 634d94649a695f873ae081c871234237 494 SUPERFAMILY SSF56281 8 285 2.1E-51 T 17-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VI35_20835 634d94649a695f873ae081c871234237 494 PIRSF PIRSF005243 1 400 6.4E-164 T 17-10-2018 IPR016440 Rubredoxin-oxygen oxidoreductase GO:0009055|GO:0010181|GO:0016491|GO:0046872 VI35_20835 634d94649a695f873ae081c871234237 494 Gene3D G3DSA:2.20.28.10 438 492 3.8E-20 T 17-10-2018 VI35_20835 634d94649a695f873ae081c871234237 494 SUPERFAMILY SSF57802 438 489 1.14E-15 T 17-10-2018 VI35_20835 634d94649a695f873ae081c871234237 494 Pfam PF00301 Rubredoxin 440 485 3.5E-18 T 17-10-2018 IPR024935 Rubredoxin domain GO:0005506 VI35_20835 634d94649a695f873ae081c871234237 494 Gene3D G3DSA:3.60.15.10 1 247 1.9E-106 T 17-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VI35_20835 634d94649a695f873ae081c871234237 494 SMART SM00849 34 227 5.3E-31 T 17-10-2018 IPR001279 Metallo-beta-lactamase VI35_20835 634d94649a695f873ae081c871234237 494 Pfam PF00258 Flavodoxin 256 389 3.2E-11 T 17-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 VI35_20835 634d94649a695f873ae081c871234237 494 Hamap MF_01312 Anaerobic nitric oxide reductase flavorubredoxin [norV]. 1 489 79.753 T 17-10-2018 IPR023957 Anaerobic nitric oxide reductase flavorubredoxin GO:0005506|GO:0016966 VI35_20835 634d94649a695f873ae081c871234237 494 SUPERFAMILY SSF52218 251 396 9.22E-35 T 17-10-2018 IPR029039 Flavoprotein-like superfamily VI35_20835 634d94649a695f873ae081c871234237 494 Pfam PF00753 Metallo-beta-lactamase superfamily 33 173 3.5E-9 T 17-10-2018 IPR001279 Metallo-beta-lactamase VI35_20835 634d94649a695f873ae081c871234237 494 PRINTS PR00163 Rubredoxin signature 439 455 5.6E-6 T 17-10-2018 IPR024935 Rubredoxin domain GO:0005506 VI35_20835 634d94649a695f873ae081c871234237 494 PRINTS PR00163 Rubredoxin signature 469 485 5.6E-6 T 17-10-2018 IPR024935 Rubredoxin domain GO:0005506 VI35_20910 2ded8864f451977d8b150b98bc4f84b4 232 SUPERFAMILY SSF63380 3 97 8.24E-18 T 17-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VI35_20910 2ded8864f451977d8b150b98bc4f84b4 232 Gene3D G3DSA:3.40.50.80 99 232 3.3E-26 T 17-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VI35_20910 2ded8864f451977d8b150b98bc4f84b4 232 Gene3D G3DSA:2.40.30.10 3 98 4.7E-21 T 17-10-2018 VI35_20910 2ded8864f451977d8b150b98bc4f84b4 232 Pfam PF00175 Oxidoreductase NAD-binding domain 108 211 5.7E-19 T 17-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 VI35_20910 2ded8864f451977d8b150b98bc4f84b4 232 SUPERFAMILY SSF52343 100 230 4.98E-34 T 17-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VI35_20910 2ded8864f451977d8b150b98bc4f84b4 232 PRINTS PR00410 Phenol hydroxylase reductase family signature 31 43 1.7E-12 T 17-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VI35_20910 2ded8864f451977d8b150b98bc4f84b4 232 PRINTS PR00410 Phenol hydroxylase reductase family signature 47 54 1.7E-12 T 17-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VI35_20910 2ded8864f451977d8b150b98bc4f84b4 232 PRINTS PR00410 Phenol hydroxylase reductase family signature 132 141 1.7E-12 T 17-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VI35_20910 2ded8864f451977d8b150b98bc4f84b4 232 PRINTS PR00410 Phenol hydroxylase reductase family signature 107 126 1.7E-12 T 17-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VI35_02565 8d3e32c26776fa9fa012f97d916a534b 690 Gene3D G3DSA:1.20.120.890 564 689 2.2E-7 T 17-10-2018 IPR038321 TmcA, C-terminal domain superfamily VI35_02565 8d3e32c26776fa9fa012f97d916a534b 690 Gene3D G3DSA:3.40.630.30 346 547 3.3E-62 T 17-10-2018 VI35_02565 8d3e32c26776fa9fa012f97d916a534b 690 Pfam PF08351 Domain of unknown function (DUF1726) 63 143 5.0E-13 T 17-10-2018 IPR013562 tRNA(Met) cytidine acetyltransferase TmcA, N-terminal Reactome: R-HSA-6790901 VI35_02565 8d3e32c26776fa9fa012f97d916a534b 690 Gene3D G3DSA:3.40.50.12320 189 341 2.2E-42 T 17-10-2018 VI35_02565 8d3e32c26776fa9fa012f97d916a534b 690 Gene3D G3DSA:3.40.50.11040 3 186 6.3E-44 T 17-10-2018 VI35_02565 8d3e32c26776fa9fa012f97d916a534b 690 Hamap MF_01886 tRNA(Met) cytidine acetyltransferase TmcA [tmcA]. 17 686 46.914 T 17-10-2018 IPR024914 tRNA(Met) cytidine acetyltransferase TmcA GO:0000049|GO:0002101|GO:0051391|GO:0051392 VI35_02565 8d3e32c26776fa9fa012f97d916a534b 690 Pfam PF05127 Helicase 191 351 1.9E-47 T 17-10-2018 IPR007807 Helicase domain Reactome: R-HSA-6790901 VI35_02565 8d3e32c26776fa9fa012f97d916a534b 690 SUPERFAMILY SSF55729 363 528 6.73E-13 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_02565 8d3e32c26776fa9fa012f97d916a534b 690 SUPERFAMILY SSF52540 146 294 7.97E-12 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_02565 8d3e32c26776fa9fa012f97d916a534b 690 Pfam PF17176 tRNA-binding domain 597 686 1.7E-9 T 17-10-2018 IPR033442 tRNA(Met) cytidine acetyltransferase TmcA, tRNA-binding domain VI35_02565 8d3e32c26776fa9fa012f97d916a534b 690 Pfam PF13718 GNAT acetyltransferase 2 383 499 6.9E-18 T 17-10-2018 IPR000182 GNAT domain VI35_12685 85507844d69d679cb3b9d434ad92b44c 219 Gene3D G3DSA:1.20.1050.10 95 219 3.1E-53 T 17-10-2018 VI35_12685 85507844d69d679cb3b9d434ad92b44c 219 SUPERFAMILY SSF47616 88 216 5.54E-33 T 17-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily VI35_12685 85507844d69d679cb3b9d434ad92b44c 219 Pfam PF13417 Glutathione S-transferase, N-terminal domain 11 86 2.4E-16 T 17-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 VI35_12685 85507844d69d679cb3b9d434ad92b44c 219 Gene3D G3DSA:3.40.30.10 6 94 1.5E-29 T 17-10-2018 VI35_12685 85507844d69d679cb3b9d434ad92b44c 219 TIGRFAM TIGR01262 maiA: maleylacetoacetate isomerase 10 217 1.5E-85 T 17-10-2018 IPR005955 Glutathione S-transferases, class Zeta GO:0003824|GO:0005737|GO:0009072 Reactome: R-HSA-156590|Reactome: R-HSA-204174|Reactome: R-HSA-71182 VI35_12685 85507844d69d679cb3b9d434ad92b44c 219 SUPERFAMILY SSF52833 4 91 6.23E-28 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_12685 85507844d69d679cb3b9d434ad92b44c 219 Pfam PF14497 Glutathione S-transferase, C-terminal domain 121 203 4.3E-7 T 17-10-2018 IPR004046 Glutathione S-transferase, C-terminal VI35_18720 20d470542f25da224ac2ff5f5b39d41c 272 ProDom PD587589 PHOSPHODIESTERASE ICC METALLOPHOSPHOESTERASE CYCLIC REGULATOR LACZ AMP HYDROLASE 3'5'-CYCLIC-NUCLEOTIDE EXPRESSION 203 258 1.0E-14 T 17-10-2018 IPR013622 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, C-terminal KEGG: 00230+3.1.4.53 VI35_18720 20d470542f25da224ac2ff5f5b39d41c 272 SUPERFAMILY SSF56300 14 266 1.46E-57 T 17-10-2018 VI35_18720 20d470542f25da224ac2ff5f5b39d41c 272 Gene3D G3DSA:3.60.21.10 2 266 1.9E-70 T 17-10-2018 IPR029052 Metallo-dependent phosphatase-like VI35_18720 20d470542f25da224ac2ff5f5b39d41c 272 Pfam PF00149 Calcineurin-like phosphoesterase 14 203 1.2E-14 T 17-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 VI35_18720 20d470542f25da224ac2ff5f5b39d41c 272 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 13 258 39.99 T 17-10-2018 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 VI35_05970 688c474e36d00999f2d087ffce9ce0f6 127 Pfam PF00072 Response regulator receiver domain 7 119 8.3E-32 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_05970 688c474e36d00999f2d087ffce9ce0f6 127 SMART SM00448 5 119 5.9E-35 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_05970 688c474e36d00999f2d087ffce9ce0f6 127 SUPERFAMILY SSF52172 3 125 6.69E-37 T 17-10-2018 IPR011006 CheY-like superfamily VI35_05970 688c474e36d00999f2d087ffce9ce0f6 127 Gene3D G3DSA:3.40.50.2300 1 126 5.0E-40 T 17-10-2018 VI35_04235 611b0f11b52187aae7dba162ec05406f 359 Pfam PF03193 RsgA GTPase 112 287 3.8E-58 T 17-10-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 VI35_04235 611b0f11b52187aae7dba162ec05406f 359 Gene3D G3DSA:2.40.50.140 50 114 6.4E-20 T 17-10-2018 VI35_04235 611b0f11b52187aae7dba162ec05406f 359 Gene3D G3DSA:3.40.50.300 115 286 2.9E-51 T 17-10-2018 VI35_04235 611b0f11b52187aae7dba162ec05406f 359 SUPERFAMILY SSF52540 126 349 2.34E-60 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_04235 611b0f11b52187aae7dba162ec05406f 359 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 89 345 2.8E-87 T 17-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 VI35_04235 611b0f11b52187aae7dba162ec05406f 359 Gene3D G3DSA:1.10.40.50 287 358 2.0E-24 T 17-10-2018 VI35_04235 611b0f11b52187aae7dba162ec05406f 359 Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 55 351 37.833 T 17-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 VI35_17450 1e7e99596308029e2eb9fd733411b9b0 519 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 355 382 1.0E-19 T 17-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VI35_17450 1e7e99596308029e2eb9fd733411b9b0 519 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 384 413 1.0E-19 T 17-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VI35_17450 1e7e99596308029e2eb9fd733411b9b0 519 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 278 307 1.0E-19 T 17-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VI35_17450 1e7e99596308029e2eb9fd733411b9b0 519 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 322 485 2.2E-39 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_17450 1e7e99596308029e2eb9fd733411b9b0 519 Pfam PF08447 PAS fold 29 113 4.1E-13 T 17-10-2018 IPR013655 PAS fold-3 GO:0005515 VI35_17450 1e7e99596308029e2eb9fd733411b9b0 519 SMART SM00283 257 518 9.0E-64 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_17450 1e7e99596308029e2eb9fd733411b9b0 519 SUPERFAMILY SSF58104 240 518 3.4E-65 T 17-10-2018 VI35_17450 1e7e99596308029e2eb9fd733411b9b0 519 SUPERFAMILY SSF55785 19 113 2.44E-24 T 17-10-2018 IPR035965 PAS domain superfamily VI35_17450 1e7e99596308029e2eb9fd733411b9b0 519 Gene3D G3DSA:1.10.287.950 230 519 1.7E-60 T 17-10-2018 VI35_17450 1e7e99596308029e2eb9fd733411b9b0 519 Gene3D G3DSA:3.30.450.20 17 115 1.4E-23 T 17-10-2018 VI35_17450 1e7e99596308029e2eb9fd733411b9b0 519 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 19 106 6.8E-11 T 17-10-2018 IPR000014 PAS domain VI35_02080 fe0c4cd5ff98e639f586d59268f2a78f 227 Pfam PF13861 FlgD Tudor-like domain 93 218 5.5E-10 T 17-10-2018 IPR025963 FlgD Tudor-like domain VI35_02080 fe0c4cd5ff98e639f586d59268f2a78f 227 Pfam PF03963 Flagellar hook capping protein - N-terminal region 16 80 2.0E-18 T 17-10-2018 IPR005648 Flagellar hook capping protein VI35_02080 fe0c4cd5ff98e639f586d59268f2a78f 227 Gene3D G3DSA:2.30.30.910 101 217 1.9E-22 T 17-10-2018 VI35_02080 fe0c4cd5ff98e639f586d59268f2a78f 227 Gene3D G3DSA:2.60.40.4070 110 189 1.9E-22 T 17-10-2018 VI35_02080 fe0c4cd5ff98e639f586d59268f2a78f 227 Pfam PF13860 FlgD Ig-like domain 116 178 5.4E-10 T 17-10-2018 IPR025965 FlgD Ig-like domain VI35_13435 3b127ffa609de42a369768b1db6e8895 131 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 45 120 4.9E-22 T 17-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 VI35_13435 3b127ffa609de42a369768b1db6e8895 131 Gene3D G3DSA:1.10.286.20 1 39 2.9E-6 T 17-10-2018 VI35_13435 3b127ffa609de42a369768b1db6e8895 131 Pfam PF14760 Rnk N-terminus 4 38 8.6E-9 T 17-10-2018 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain VI35_13435 3b127ffa609de42a369768b1db6e8895 131 PIRSF PIRSF006092 12 123 3.3E-26 T 17-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 VI35_13435 3b127ffa609de42a369768b1db6e8895 131 Gene3D G3DSA:3.10.50.30 40 131 6.7E-32 T 17-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 VI35_13435 3b127ffa609de42a369768b1db6e8895 131 SUPERFAMILY SSF54534 44 122 6.28E-20 T 17-10-2018 VI35_04865 094d798593771954881d484094cfa121 108 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 2.0E-42 T 17-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 VI35_04865 094d798593771954881d484094cfa121 108 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 2.0E-42 T 17-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 VI35_04865 094d798593771954881d484094cfa121 108 PRINTS PR01651 Protein-export SecG membrane protein signature 38 54 2.0E-42 T 17-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 VI35_04865 094d798593771954881d484094cfa121 108 PRINTS PR01651 Protein-export SecG membrane protein signature 54 76 2.0E-42 T 17-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 VI35_04865 094d798593771954881d484094cfa121 108 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 3 72 7.5E-26 T 17-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 VI35_04865 094d798593771954881d484094cfa121 108 Pfam PF03840 Preprotein translocase SecG subunit 4 71 6.8E-22 T 17-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 VI35_06125 e5b646caf2e817c048dd0c2a6d60a5d8 272 Pfam PF11299 Protein of unknown function (DUF3100) 24 264 5.9E-76 T 17-10-2018 IPR021450 Protein of unknown function DUF3100 VI35_19510 a34df319e465b591c027938f0ed8eff4 511 Pfam PF00563 EAL domain 261 486 3.7E-58 T 17-10-2018 IPR001633 EAL domain VI35_19510 a34df319e465b591c027938f0ed8eff4 511 Gene3D G3DSA:3.20.20.450 252 502 5.5E-71 T 17-10-2018 IPR035919 EAL domain superfamily VI35_19510 a34df319e465b591c027938f0ed8eff4 511 SMART SM00052 253 491 2.4E-78 T 17-10-2018 IPR001633 EAL domain VI35_19510 a34df319e465b591c027938f0ed8eff4 511 SUPERFAMILY SSF141868 260 500 2.09E-70 T 17-10-2018 IPR035919 EAL domain superfamily VI35_10110 1583a071f311610224ef8efe4a2dda92 765 SUPERFAMILY SSF50692 636 756 1.4E-14 T 17-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily VI35_10110 1583a071f311610224ef8efe4a2dda92 765 Gene3D G3DSA:3.40.228.10 182 401 2.4E-74 T 17-10-2018 VI35_10110 1583a071f311610224ef8efe4a2dda92 765 TIGRFAM TIGR01701 Fdhalpha-like: oxidoreductase alpha (molybdopterin) subunit 11 753 9.6E-272 T 17-10-2018 IPR010046 Oxidoreductase alpha (molybdopterin) subunit GO:0008863|GO:0030151|GO:0051539 VI35_10110 1583a071f311610224ef8efe4a2dda92 765 SUPERFAMILY SSF53706 45 620 3.93E-145 T 17-10-2018 VI35_10110 1583a071f311610224ef8efe4a2dda92 765 Pfam PF01568 Molydopterin dinucleotide binding domain 640 745 4.6E-9 T 17-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 VI35_10110 1583a071f311610224ef8efe4a2dda92 765 Pfam PF00384 Molybdopterin oxidoreductase 106 477 5.7E-28 T 17-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_10110 1583a071f311610224ef8efe4a2dda92 765 Gene3D G3DSA:3.40.50.740 118 507 2.4E-74 T 17-10-2018 VI35_10110 1583a071f311610224ef8efe4a2dda92 765 PIRSF PIRSF000144 2 758 0.0 T 17-10-2018 VI35_08625 57d623b4d8841819b9c7853611d5acbf 324 Gene3D G3DSA:3.40.50.1400 166 304 7.7E-97 T 17-10-2018 VI35_08625 57d623b4d8841819b9c7853611d5acbf 324 Pfam PF00762 Ferrochelatase 4 322 5.7E-116 T 17-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 VI35_08625 57d623b4d8841819b9c7853611d5acbf 324 TIGRFAM TIGR00109 hemH: ferrochelatase 3 322 7.1E-105 T 17-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 VI35_08625 57d623b4d8841819b9c7853611d5acbf 324 ProSitePatterns PS00534 Ferrochelatase signature. 192 210 - T 17-10-2018 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 VI35_08625 57d623b4d8841819b9c7853611d5acbf 324 Gene3D G3DSA:3.40.50.1400 4 322 7.7E-97 T 17-10-2018 VI35_08625 57d623b4d8841819b9c7853611d5acbf 324 SUPERFAMILY SSF53800 3 323 9.16E-105 T 17-10-2018 VI35_08625 57d623b4d8841819b9c7853611d5acbf 324 Hamap MF_00323 Ferrochelatase [hemH]. 3 323 37.416 T 17-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 VI35_05750 759f7c2e91068684ea29580b92da5484 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 61 6.6E-15 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_05750 759f7c2e91068684ea29580b92da5484 300 Gene3D G3DSA:3.40.190.10 89 284 3.9E-24 T 17-10-2018 VI35_05750 759f7c2e91068684ea29580b92da5484 300 SUPERFAMILY SSF46785 1 108 5.65E-18 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_05750 759f7c2e91068684ea29580b92da5484 300 Gene3D G3DSA:1.10.10.10 1 82 2.1E-18 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_05750 759f7c2e91068684ea29580b92da5484 300 Pfam PF03466 LysR substrate binding domain 86 290 3.1E-27 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_05750 759f7c2e91068684ea29580b92da5484 300 Gene3D G3DSA:3.40.190.10 160 263 3.9E-24 T 17-10-2018 VI35_05750 759f7c2e91068684ea29580b92da5484 300 SUPERFAMILY SSF53850 89 294 7.53E-29 T 17-10-2018 VI35_00570 addb5dfc5937ed249fe7fd5de48092bf 161 Pfam PF04463 Protein of unknown function (DUF523) 9 144 9.0E-43 T 17-10-2018 IPR007553 Domain of unknown function DUF523 VI35_13065 afb26e25f34e70d31264474b835c48fb 211 Pfam PF11140 Protein of unknown function (DUF2913) 6 209 2.4E-71 T 17-10-2018 IPR021316 Protein of unknown function DUF2913 VI35_11460 196a02eb87d50987096848b948c934d9 462 SMART SM00487 20 222 7.4E-63 T 17-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VI35_11460 196a02eb87d50987096848b948c934d9 462 Pfam PF00270 DEAD/DEAH box helicase 25 195 1.8E-49 T 17-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VI35_11460 196a02eb87d50987096848b948c934d9 462 SMART SM00490 258 339 1.4E-32 T 17-10-2018 IPR001650 Helicase, C-terminal VI35_11460 196a02eb87d50987096848b948c934d9 462 Gene3D G3DSA:3.40.50.300 1 210 9.5E-80 T 17-10-2018 VI35_11460 196a02eb87d50987096848b948c934d9 462 SUPERFAMILY SSF52540 74 358 1.2E-72 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_11460 196a02eb87d50987096848b948c934d9 462 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 153 161 - T 17-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VI35_11460 196a02eb87d50987096848b948c934d9 462 Pfam PF00271 Helicase conserved C-terminal domain 240 339 1.2E-26 T 17-10-2018 IPR001650 Helicase, C-terminal VI35_11460 196a02eb87d50987096848b948c934d9 462 Gene3D G3DSA:3.40.50.300 213 379 3.2E-49 T 17-10-2018 VI35_04465 79ce202ba9474d3cf9954950a7362339 874 SUPERFAMILY SSF53706 2 563 2.75E-181 T 17-10-2018 VI35_04465 79ce202ba9474d3cf9954950a7362339 874 Gene3D G3DSA:2.20.25.90 1 50 2.6E-12 T 17-10-2018 VI35_04465 79ce202ba9474d3cf9954950a7362339 874 Gene3D G3DSA:3.40.50.740 64 558 4.1E-165 T 17-10-2018 VI35_04465 79ce202ba9474d3cf9954950a7362339 874 Pfam PF00384 Molybdopterin oxidoreductase 63 477 2.4E-71 T 17-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_04465 79ce202ba9474d3cf9954950a7362339 874 Gene3D G3DSA:1.10.10.1100 817 869 1.3E-8 T 17-10-2018 VI35_04465 79ce202ba9474d3cf9954950a7362339 874 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 2 49 2.5E-15 T 17-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_04465 79ce202ba9474d3cf9954950a7362339 874 Pfam PF01568 Molydopterin dinucleotide binding domain 582 691 4.4E-26 T 17-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 VI35_04465 79ce202ba9474d3cf9954950a7362339 874 Gene3D G3DSA:3.40.228.10 131 562 4.1E-165 T 17-10-2018 VI35_04465 79ce202ba9474d3cf9954950a7362339 874 SUPERFAMILY SSF50692 549 695 2.49E-33 T 17-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily VI35_04465 79ce202ba9474d3cf9954950a7362339 874 SMART SM00926 1 51 7.5E-11 T 17-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_04465 79ce202ba9474d3cf9954950a7362339 874 PIRSF PIRSF036643 1 706 2.7E-137 T 17-10-2018 VI35_04465 79ce202ba9474d3cf9954950a7362339 874 Pfam PF04324 BFD-like [2Fe-2S] binding domain 817 866 2.4E-11 T 17-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain VI35_04465 79ce202ba9474d3cf9954950a7362339 874 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 3 21 - T 17-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 VI35_04465 79ce202ba9474d3cf9954950a7362339 874 Gene3D G3DSA:2.40.40.20 577 701 5.3E-27 T 17-10-2018 VI35_15605 5b3a4709546b3113d1e2ee336584a851 98 Pfam PF11743 Protein of unknown function (DUF3301) 6 93 7.9E-28 T 17-10-2018 IPR021732 Protein of unknown function DUF3301 VI35_16015 543482b6ab24d71f87177fcd216d457c 353 SUPERFAMILY SSF50952 19 352 6.02E-48 T 17-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 VI35_16015 543482b6ab24d71f87177fcd216d457c 353 Pfam PF07995 Glucose / Sorbosone dehydrogenase 28 350 2.7E-129 T 17-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase VI35_16015 543482b6ab24d71f87177fcd216d457c 353 Gene3D G3DSA:2.120.10.30 16 353 2.7E-113 T 17-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like VI35_10235 5d61e2fdea5f07f7464cc796e81ff425 96 Pfam PF03795 YCII-related domain 1 81 1.5E-13 T 17-10-2018 IPR005545 YCII-related VI35_10235 5d61e2fdea5f07f7464cc796e81ff425 96 SUPERFAMILY SSF54909 1 84 2.09E-17 T 17-10-2018 IPR011008 Dimeric alpha-beta barrel VI35_10235 5d61e2fdea5f07f7464cc796e81ff425 96 Gene3D G3DSA:3.30.70.1060 10 88 5.1E-5 T 17-10-2018 VI35_13150 32d2debcc8e0fbc5d036ff06713f434a 354 Gene3D G3DSA:3.20.20.70 1 349 6.0E-153 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_13150 32d2debcc8e0fbc5d036ff06713f434a 354 PIRSF PIRSF001361 1 352 3.3E-155 T 17-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 VI35_13150 32d2debcc8e0fbc5d036ff06713f434a 354 SUPERFAMILY SSF51569 8 346 2.83E-133 T 17-10-2018 VI35_13150 32d2debcc8e0fbc5d036ff06713f434a 354 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 6 348 1.6E-162 T 17-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 VI35_13150 32d2debcc8e0fbc5d036ff06713f434a 354 Pfam PF00793 DAHP synthetase I family 43 338 9.1E-101 T 17-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 VI35_02390 643737c94a1d9828f25c22ba85267018 767 Gene3D G3DSA:3.40.1090.10 33 148 3.2E-27 T 17-10-2018 VI35_02390 643737c94a1d9828f25c22ba85267018 767 Gene3D G3DSA:3.40.1090.10 155 290 4.0E-18 T 17-10-2018 VI35_02390 643737c94a1d9828f25c22ba85267018 767 SUPERFAMILY SSF52151 42 267 2.2E-51 T 17-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase VI35_02390 643737c94a1d9828f25c22ba85267018 767 Pfam PF01734 Patatin-like phospholipase 49 240 7.8E-30 T 17-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 VI35_02390 643737c94a1d9828f25c22ba85267018 767 Gene3D G3DSA:3.10.20.310 356 427 9.6E-8 T 17-10-2018 VI35_06995 96ede2df93feccabcfd5ae9cd631c0aa 991 Gene3D G3DSA:3.30.565.10 840 986 1.3E-19 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_06995 96ede2df93feccabcfd5ae9cd631c0aa 991 SUPERFAMILY SSF55874 8 134 4.71E-22 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_06995 96ede2df93feccabcfd5ae9cd631c0aa 991 SMART SM00387 884 990 5.0E-13 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_06995 96ede2df93feccabcfd5ae9cd631c0aa 991 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 889 987 3.2E-13 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_06995 96ede2df93feccabcfd5ae9cd631c0aa 991 SUPERFAMILY SSF55874 849 986 2.1E-17 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_06995 96ede2df93feccabcfd5ae9cd631c0aa 991 Gene3D G3DSA:3.30.565.10 2 155 2.4E-24 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_06995 96ede2df93feccabcfd5ae9cd631c0aa 991 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 24 136 5.1E-21 T 17-10-2018 VI35_06995 96ede2df93feccabcfd5ae9cd631c0aa 991 Gene3D G3DSA:1.10.287.130 782 839 1.3E-19 T 17-10-2018 VI35_00025 19895c5a6c9acd7f470f439185425617 321 SMART SM00342 230 313 2.0E-23 T 17-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VI35_00025 19895c5a6c9acd7f470f439185425617 321 Gene3D G3DSA:3.40.50.880 5 208 2.3E-46 T 17-10-2018 IPR029062 Class I glutamine amidotransferase-like VI35_00025 19895c5a6c9acd7f470f439185425617 321 Gene3D G3DSA:1.10.10.60 209 317 1.7E-23 T 17-10-2018 VI35_00025 19895c5a6c9acd7f470f439185425617 321 SUPERFAMILY SSF52317 7 195 1.64E-40 T 17-10-2018 IPR029062 Class I glutamine amidotransferase-like VI35_00025 19895c5a6c9acd7f470f439185425617 321 SUPERFAMILY SSF46689 213 264 1.97E-8 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_00025 19895c5a6c9acd7f470f439185425617 321 SUPERFAMILY SSF46689 267 317 1.29E-8 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_00025 19895c5a6c9acd7f470f439185425617 321 Pfam PF01965 DJ-1/PfpI family 44 174 7.1E-9 T 17-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 VI35_00025 19895c5a6c9acd7f470f439185425617 321 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 267 309 - T 17-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VI35_00025 19895c5a6c9acd7f470f439185425617 321 Pfam PF12833 Helix-turn-helix domain 236 314 6.1E-17 T 17-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VI35_17085 d86b3eb5e1a9e125383172351ce7770e 149 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 11 142 2.8E-31 T 17-10-2018 IPR006464 N-acetyltransferase RimI/Ard1 GO:0006474|GO:0016407 VI35_17085 d86b3eb5e1a9e125383172351ce7770e 149 SUPERFAMILY SSF55729 3 145 1.96E-29 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_17085 d86b3eb5e1a9e125383172351ce7770e 149 Gene3D G3DSA:3.40.630.30 3 146 2.0E-37 T 17-10-2018 VI35_17085 d86b3eb5e1a9e125383172351ce7770e 149 Pfam PF00583 Acetyltransferase (GNAT) family 16 120 1.1E-12 T 17-10-2018 IPR000182 GNAT domain VI35_03835 076d7c4b234f9da49c5be2ee1e75f0ef 256 Gene3D G3DSA:3.40.190.80 152 256 2.4E-34 T 17-10-2018 VI35_03835 076d7c4b234f9da49c5be2ee1e75f0ef 256 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 83 96 - T 17-10-2018 IPR020583 Inositol monophosphatase, metal-binding site VI35_03835 076d7c4b234f9da49c5be2ee1e75f0ef 256 Pfam PF00459 Inositol monophosphatase family 11 248 9.6E-48 T 17-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VI35_03835 076d7c4b234f9da49c5be2ee1e75f0ef 256 SUPERFAMILY SSF56655 7 253 9.29E-71 T 17-10-2018 VI35_03835 076d7c4b234f9da49c5be2ee1e75f0ef 256 TIGRFAM TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase 8 255 1.4E-88 T 17-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 VI35_03835 076d7c4b234f9da49c5be2ee1e75f0ef 256 Gene3D G3DSA:3.30.540.10 6 151 2.2E-45 T 17-10-2018 VI35_03835 076d7c4b234f9da49c5be2ee1e75f0ef 256 PRINTS PR00377 Inositol monophosphatase superfamily signature 213 237 4.1E-11 T 17-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VI35_03835 076d7c4b234f9da49c5be2ee1e75f0ef 256 PRINTS PR00377 Inositol monophosphatase superfamily signature 59 75 4.1E-11 T 17-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VI35_03835 076d7c4b234f9da49c5be2ee1e75f0ef 256 PRINTS PR00377 Inositol monophosphatase superfamily signature 37 57 4.1E-11 T 17-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VI35_03835 076d7c4b234f9da49c5be2ee1e75f0ef 256 PRINTS PR00377 Inositol monophosphatase superfamily signature 83 99 4.1E-11 T 17-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VI35_03835 076d7c4b234f9da49c5be2ee1e75f0ef 256 Hamap MF_02095 3'(2'),5'-bisphosphate nucleotidase CysQ [cysQ]. 5 255 40.679 T 17-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 VI35_10280 b5710cb105ac61891873ce63a5614da7 410 SUPERFAMILY SSF48452 257 356 8.35E-5 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_10280 b5710cb105ac61891873ce63a5614da7 410 Pfam PF03695 Uncharacterised protein family (UPF0149) 9 124 7.8E-11 T 17-10-2018 IPR011978 Uncharacterised protein family UPF0149 VI35_10280 b5710cb105ac61891873ce63a5614da7 410 Gene3D G3DSA:1.20.120.740 4 130 2.3E-6 T 17-10-2018 VI35_10280 b5710cb105ac61891873ce63a5614da7 410 SUPERFAMILY SSF101327 9 123 4.97E-11 T 17-10-2018 IPR036255 YgfB-like superfamily VI35_02270 346bab568760888ec3eac9f626ca7d73 383 ProSitePatterns PS01135 FtsZ protein signature 2. 97 118 - T 17-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 VI35_02270 346bab568760888ec3eac9f626ca7d73 383 PRINTS PR00423 Cell division protein FtsZ signature 212 233 2.6E-52 T 17-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 VI35_02270 346bab568760888ec3eac9f626ca7d73 383 PRINTS PR00423 Cell division protein FtsZ signature 98 118 2.6E-52 T 17-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 VI35_02270 346bab568760888ec3eac9f626ca7d73 383 PRINTS PR00423 Cell division protein FtsZ signature 189 211 2.6E-52 T 17-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 VI35_02270 346bab568760888ec3eac9f626ca7d73 383 PRINTS PR00423 Cell division protein FtsZ signature 126 147 2.6E-52 T 17-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 VI35_02270 346bab568760888ec3eac9f626ca7d73 383 SMART SM00864 13 205 3.7E-111 T 17-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 VI35_02270 346bab568760888ec3eac9f626ca7d73 383 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 14 173 5.9E-39 T 17-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 VI35_02270 346bab568760888ec3eac9f626ca7d73 383 Gene3D G3DSA:3.30.1330.20 221 331 4.8E-36 T 17-10-2018 IPR037103 Tubulin/FtsZ, C-terminal domain superfamily Reactome: R-HSA-380320 VI35_02270 346bab568760888ec3eac9f626ca7d73 383 SUPERFAMILY SSF52490 13 208 1.7E-69 T 17-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 VI35_02270 346bab568760888ec3eac9f626ca7d73 383 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 8 331 3.9E-137 T 17-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 VI35_02270 346bab568760888ec3eac9f626ca7d73 383 Gene3D G3DSA:3.40.50.1440 4 220 1.2E-80 T 17-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 VI35_02270 346bab568760888ec3eac9f626ca7d73 383 Pfam PF12327 FtsZ family, C-terminal domain 222 316 9.6E-39 T 17-10-2018 IPR024757 Cell division protein FtsZ, C-terminal VI35_02270 346bab568760888ec3eac9f626ca7d73 383 SUPERFAMILY SSF55307 204 320 4.81E-43 T 17-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 VI35_02270 346bab568760888ec3eac9f626ca7d73 383 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 9 383 38.322 T 17-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 VI35_02270 346bab568760888ec3eac9f626ca7d73 383 SMART SM00865 207 325 5.4E-56 T 17-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 VI35_02270 346bab568760888ec3eac9f626ca7d73 383 ProSitePatterns PS01134 FtsZ protein signature 1. 44 78 - T 17-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 VI35_03860 aa5af5516b5c37fe804185dae9f437ac 553 Gene3D G3DSA:3.30.70.1450 281 359 4.7E-11 T 17-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VI35_03860 aa5af5516b5c37fe804185dae9f437ac 553 Gene3D G3DSA:3.30.70.1450 197 273 1.9E-10 T 17-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VI35_03860 aa5af5516b5c37fe804185dae9f437ac 553 Pfam PF06826 Predicted Permease Membrane Region 374 546 2.2E-45 T 17-10-2018 IPR006512 YidE/YbjL duplication VI35_03860 aa5af5516b5c37fe804185dae9f437ac 553 Pfam PF06826 Predicted Permease Membrane Region 11 180 4.0E-43 T 17-10-2018 IPR006512 YidE/YbjL duplication VI35_03860 aa5af5516b5c37fe804185dae9f437ac 553 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 379 533 2.9E-45 T 17-10-2018 IPR006512 YidE/YbjL duplication VI35_03860 aa5af5516b5c37fe804185dae9f437ac 553 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 16 166 9.1E-37 T 17-10-2018 IPR006512 YidE/YbjL duplication VI35_03860 aa5af5516b5c37fe804185dae9f437ac 553 Pfam PF02080 TrkA-C domain 291 358 4.5E-9 T 17-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 VI35_03860 aa5af5516b5c37fe804185dae9f437ac 553 Pfam PF02080 TrkA-C domain 212 273 2.6E-7 T 17-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 VI35_03860 aa5af5516b5c37fe804185dae9f437ac 553 SUPERFAMILY SSF116726 203 271 1.83E-9 T 17-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VI35_03860 aa5af5516b5c37fe804185dae9f437ac 553 SUPERFAMILY SSF116726 275 358 1.44E-13 T 17-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VI35_03860 aa5af5516b5c37fe804185dae9f437ac 553 Hamap MF_01016 Putative transport protein YidE [yidE]. 1 553 55.945 T 17-10-2018 IPR023018 Transport protein YidE, putative VI35_15500 8a5bb3ad44ea224566990037dd329c65 170 PIRSF PIRSF002094 1 170 6.9E-47 T 17-10-2018 IPR005632 Chaperone protein Skp GO:0051082 VI35_15500 8a5bb3ad44ea224566990037dd329c65 170 SMART SM00935 13 167 7.4E-52 T 17-10-2018 IPR005632 Chaperone protein Skp GO:0051082 VI35_15500 8a5bb3ad44ea224566990037dd329c65 170 SUPERFAMILY SSF111384 24 166 3.4E-37 T 17-10-2018 VI35_15500 8a5bb3ad44ea224566990037dd329c65 170 Gene3D G3DSA:3.30.910.20 24 167 1.6E-43 T 17-10-2018 IPR024930 Skp domain superfamily VI35_15500 8a5bb3ad44ea224566990037dd329c65 170 Pfam PF03938 Outer membrane protein (OmpH-like) 13 165 3.9E-33 T 17-10-2018 IPR005632 Chaperone protein Skp GO:0051082 VI35_16350 d83811fbfa288aae9f7c14ca35d53dad 134 SUPERFAMILY SSF82784 1 132 1.83E-42 T 17-10-2018 IPR036102 OsmC/Ohr superfamily VI35_16350 d83811fbfa288aae9f7c14ca35d53dad 134 Gene3D G3DSA:2.20.25.10 1 35 2.0E-16 T 17-10-2018 VI35_16350 d83811fbfa288aae9f7c14ca35d53dad 134 Pfam PF02566 OsmC-like protein 31 127 3.2E-20 T 17-10-2018 IPR003718 OsmC/Ohr family VI35_16350 d83811fbfa288aae9f7c14ca35d53dad 134 Gene3D G3DSA:3.30.300.20 36 133 1.4E-32 T 17-10-2018 IPR015946 K homology domain-like, alpha/beta VI35_12240 1054314c2d2544d7c1f26f961433ddb5 505 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 248 272 1.8E-38 T 17-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12240 1054314c2d2544d7c1f26f961433ddb5 505 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 336 355 1.8E-38 T 17-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12240 1054314c2d2544d7c1f26f961433ddb5 505 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 173 197 1.8E-38 T 17-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12240 1054314c2d2544d7c1f26f961433ddb5 505 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 138 157 1.8E-38 T 17-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12240 1054314c2d2544d7c1f26f961433ddb5 505 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 388 414 1.8E-38 T 17-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12240 1054314c2d2544d7c1f26f961433ddb5 505 Pfam PF00361 Proton-conducting membrane transporter 132 430 2.8E-70 T 17-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12240 1054314c2d2544d7c1f26f961433ddb5 505 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 5 492 1.7E-175 T 17-10-2018 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_07625 a52c349e3fbd584a1dc48fa343ef3e34 473 Pfam PF02554 Carbon starvation protein CstA 4 144 2.1E-32 T 17-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 VI35_07625 a52c349e3fbd584a1dc48fa343ef3e34 473 Pfam PF02554 Carbon starvation protein CstA 151 279 9.1E-19 T 17-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 VI35_07625 a52c349e3fbd584a1dc48fa343ef3e34 473 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 317 427 4.0E-23 T 17-10-2018 IPR025299 CstA, C-terminal domain VI35_19250 276512f618b8239b9c740281804ebab1 535 SUPERFAMILY SSF53613 20 280 1.48E-66 T 17-10-2018 IPR029056 Ribokinase-like VI35_19250 276512f618b8239b9c740281804ebab1 535 SUPERFAMILY SSF51391 315 514 2.62E-61 T 17-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 VI35_19250 276512f618b8239b9c740281804ebab1 535 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 330 512 6.5E-48 T 17-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 VI35_19250 276512f618b8239b9c740281804ebab1 535 Pfam PF02581 Thiamine monophosphate synthase 330 499 2.0E-52 T 17-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 VI35_19250 276512f618b8239b9c740281804ebab1 535 Pfam PF08543 Phosphomethylpyrimidine kinase 30 275 8.7E-72 T 17-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 VI35_19250 276512f618b8239b9c740281804ebab1 535 Gene3D G3DSA:3.40.1190.20 6 283 5.7E-88 T 17-10-2018 IPR029056 Ribokinase-like VI35_19250 276512f618b8239b9c740281804ebab1 535 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 301 517 19.54 T 17-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 VI35_19250 276512f618b8239b9c740281804ebab1 535 Gene3D G3DSA:3.20.20.70 317 518 1.8E-55 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_19250 276512f618b8239b9c740281804ebab1 535 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 24 277 6.4E-73 T 17-10-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 VI35_18255 caa0b87a553ce366aa9b671f2360767a 350 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 27 341 7.0E-159 T 17-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 VI35_18255 caa0b87a553ce366aa9b671f2360767a 350 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 108 126 - T 17-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 VI35_18255 caa0b87a553ce366aa9b671f2360767a 350 SUPERFAMILY SSF51395 28 321 4.89E-78 T 17-10-2018 VI35_18255 caa0b87a553ce366aa9b671f2360767a 350 Pfam PF01207 Dihydrouridine synthase (Dus) 30 330 3.8E-92 T 17-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 VI35_18255 caa0b87a553ce366aa9b671f2360767a 350 Gene3D G3DSA:1.20.120.1460 267 342 1.0E-23 T 17-10-2018 VI35_18255 caa0b87a553ce366aa9b671f2360767a 350 Gene3D G3DSA:3.20.20.70 24 265 5.0E-75 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_18255 caa0b87a553ce366aa9b671f2360767a 350 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 21 342 53.36 T 17-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 VI35_18255 caa0b87a553ce366aa9b671f2360767a 350 PIRSF PIRSF006621 17 343 8.3E-77 T 17-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 VI35_19690 b13b59620e90837575c4ae0a035c4ba2 240 Gene3D G3DSA:3.40.50.720 1 240 2.0E-71 T 17-10-2018 VI35_19690 b13b59620e90837575c4ae0a035c4ba2 240 Pfam PF00106 short chain dehydrogenase 6 188 2.1E-52 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_19690 b13b59620e90837575c4ae0a035c4ba2 240 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 17-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 VI35_19690 b13b59620e90837575c4ae0a035c4ba2 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 134 3.0E-10 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_19690 b13b59620e90837575c4ae0a035c4ba2 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 3.0E-10 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_19690 b13b59620e90837575c4ae0a035c4ba2 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 3.0E-10 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_19690 b13b59620e90837575c4ae0a035c4ba2 240 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 163 0.0027 T 17-10-2018 VI35_19690 b13b59620e90837575c4ae0a035c4ba2 240 SUPERFAMILY SSF51735 3 224 8.95E-62 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_19690 b13b59620e90837575c4ae0a035c4ba2 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 1.7E-30 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_19690 b13b59620e90837575c4ae0a035c4ba2 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 1.7E-30 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_19690 b13b59620e90837575c4ae0a035c4ba2 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 1.7E-30 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_19690 b13b59620e90837575c4ae0a035c4ba2 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 1.7E-30 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_19690 b13b59620e90837575c4ae0a035c4ba2 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 202 222 1.7E-30 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_19690 b13b59620e90837575c4ae0a035c4ba2 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 1.7E-30 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_18250 7126506c2fdbd32394c1f4ad1c71716b 318 SUPERFAMILY SSF56349 20 302 8.54E-41 T 17-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VI35_18250 7126506c2fdbd32394c1f4ad1c71716b 318 Gene3D G3DSA:1.10.443.10 126 317 3.1E-25 T 17-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VI35_18250 7126506c2fdbd32394c1f4ad1c71716b 318 Pfam PF00589 Phage integrase family 138 297 2.6E-18 T 17-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VI35_00780 76e4223dd8ef346f964d833501bfa473 301 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 290 2.7E-17 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_00780 76e4223dd8ef346f964d833501bfa473 301 SUPERFAMILY SSF161098 14 296 7.2E-56 T 17-10-2018 IPR035906 MetI-like superfamily VI35_00780 76e4223dd8ef346f964d833501bfa473 301 Gene3D G3DSA:1.10.3720.10 13 296 4.0E-53 T 17-10-2018 IPR035906 MetI-like superfamily VI35_03985 f7b956b7990c8d7939d05ab169cffecc 399 PIRSF PIRSF000722 1 399 2.0E-141 T 17-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VI35_03985 f7b956b7990c8d7939d05ab169cffecc 399 PRINTS PR00471 Acetate kinase family signature 301 314 3.7E-48 T 17-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VI35_03985 f7b956b7990c8d7939d05ab169cffecc 399 PRINTS PR00471 Acetate kinase family signature 5 16 3.7E-48 T 17-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VI35_03985 f7b956b7990c8d7939d05ab169cffecc 399 PRINTS PR00471 Acetate kinase family signature 175 188 3.7E-48 T 17-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VI35_03985 f7b956b7990c8d7939d05ab169cffecc 399 PRINTS PR00471 Acetate kinase family signature 379 391 3.7E-48 T 17-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VI35_03985 f7b956b7990c8d7939d05ab169cffecc 399 PRINTS PR00471 Acetate kinase family signature 205 226 3.7E-48 T 17-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VI35_03985 f7b956b7990c8d7939d05ab169cffecc 399 PRINTS PR00471 Acetate kinase family signature 324 340 3.7E-48 T 17-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VI35_03985 f7b956b7990c8d7939d05ab169cffecc 399 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 5 16 - T 17-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VI35_03985 f7b956b7990c8d7939d05ab169cffecc 399 SUPERFAMILY SSF53067 158 398 3.09E-84 T 17-10-2018 VI35_03985 f7b956b7990c8d7939d05ab169cffecc 399 Hamap MF_00020 Acetate kinase [ackA]. 1 399 184.089 T 17-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VI35_03985 f7b956b7990c8d7939d05ab169cffecc 399 Pfam PF00871 Acetokinase family 5 392 1.6E-155 T 17-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VI35_03985 f7b956b7990c8d7939d05ab169cffecc 399 TIGRFAM TIGR00016 ackA: acetate kinase 2 397 5.3E-167 T 17-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VI35_03985 f7b956b7990c8d7939d05ab169cffecc 399 SUPERFAMILY SSF53067 3 198 3.37E-62 T 17-10-2018 VI35_03985 f7b956b7990c8d7939d05ab169cffecc 399 Gene3D G3DSA:3.30.420.40 2 197 4.0E-73 T 17-10-2018 VI35_03985 f7b956b7990c8d7939d05ab169cffecc 399 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 205 222 - T 17-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VI35_03985 f7b956b7990c8d7939d05ab169cffecc 399 Gene3D G3DSA:3.30.420.40 198 399 1.3E-82 T 17-10-2018 VI35_05440 6e725296f116af38b1cc5b32da37d0fb 489 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 273 284 - T 17-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 VI35_05440 6e725296f116af38b1cc5b32da37d0fb 489 TIGRFAM TIGR03240 arg_catab_astD: succinylglutamate-semialdehyde dehydrogenase 6 489 7.0E-255 T 17-10-2018 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 VI35_05440 6e725296f116af38b1cc5b32da37d0fb 489 Gene3D G3DSA:3.40.309.10 250 440 1.3E-147 T 17-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 VI35_05440 6e725296f116af38b1cc5b32da37d0fb 489 Pfam PF00171 Aldehyde dehydrogenase family 12 463 4.6E-126 T 17-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 VI35_05440 6e725296f116af38b1cc5b32da37d0fb 489 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 245 252 - T 17-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 VI35_05440 6e725296f116af38b1cc5b32da37d0fb 489 SUPERFAMILY SSF53720 6 458 5.37E-128 T 17-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 VI35_05440 6e725296f116af38b1cc5b32da37d0fb 489 Gene3D G3DSA:3.40.605.10 10 452 1.3E-147 T 17-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 VI35_05440 6e725296f116af38b1cc5b32da37d0fb 489 Hamap MF_01174 N-succinylglutamate 5-semialdehyde dehydrogenase [astD]. 4 489 58.531 T 17-10-2018 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 VI35_15965 6af47e35a614da13a4fa4d3342ae5934 141 PIRSF PIRSF028687 1 140 5.0E-35 T 17-10-2018 IPR007293 Flagellar protein FlgP VI35_15965 6af47e35a614da13a4fa4d3342ae5934 141 Pfam PF02169 LPP20 lipoprotein 50 126 1.8E-9 T 17-10-2018 IPR024952 Lipoprotein LPP20-like VI35_10545 0b4a008771a7bad21590891e42025e1d 377 TIGRFAM TIGR01261 hisB_Nterm: histidinol-phosphatase 4 162 1.4E-69 T 17-10-2018 IPR005954 Histidinol-phosphatase GO:0000105|GO:0004401|GO:0004424|GO:0005737 KEGG: 00340+4.2.1.19+3.1.3.15 VI35_10545 0b4a008771a7bad21590891e42025e1d 377 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 5 149 1.3E-26 T 17-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 VI35_10545 0b4a008771a7bad21590891e42025e1d 377 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 226 239 - T 17-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 VI35_10545 0b4a008771a7bad21590891e42025e1d 377 Hamap MF_01022 Histidine biosynthesis bifunctional protein HisB [hisB]. 2 377 49.569 T 17-10-2018 IPR020566 Histidine biosynthesis bifunctional protein HisB GO:0000105|GO:0004401|GO:0004424 KEGG: 00340+4.2.1.19+3.1.3.15 VI35_10545 0b4a008771a7bad21590891e42025e1d 377 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 196 359 1.3E-61 T 17-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 VI35_10545 0b4a008771a7bad21590891e42025e1d 377 SUPERFAMILY SSF54211 283 363 4.43E-20 T 17-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VI35_10545 0b4a008771a7bad21590891e42025e1d 377 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 5 145 2.2E-44 T 17-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 VI35_10545 0b4a008771a7bad21590891e42025e1d 377 Pfam PF13242 HAD-hyrolase-like 103 146 1.1E-6 T 17-10-2018 VI35_10545 0b4a008771a7bad21590891e42025e1d 377 Gene3D G3DSA:3.30.230.40 164 254 8.5E-38 T 17-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 VI35_10545 0b4a008771a7bad21590891e42025e1d 377 SUPERFAMILY SSF54211 167 251 2.66E-32 T 17-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VI35_10545 0b4a008771a7bad21590891e42025e1d 377 SUPERFAMILY SSF56784 1 158 6.64E-39 T 17-10-2018 IPR036412 HAD-like superfamily VI35_10545 0b4a008771a7bad21590891e42025e1d 377 Gene3D G3DSA:3.30.230.40 279 377 2.2E-26 T 17-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 VI35_10545 0b4a008771a7bad21590891e42025e1d 377 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 167 377 32.919 T 17-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 VI35_10545 0b4a008771a7bad21590891e42025e1d 377 Gene3D G3DSA:3.40.50.1000 1 163 3.3E-43 T 17-10-2018 IPR023214 HAD superfamily VI35_17195 eb7e6aaa3dabfcce3bf905de7dc71551 146 SUPERFAMILY SSF55811 4 137 4.74E-32 T 17-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VI35_17195 eb7e6aaa3dabfcce3bf905de7dc71551 146 Gene3D G3DSA:3.90.79.10 1 131 9.5E-38 T 17-10-2018 VI35_17195 eb7e6aaa3dabfcce3bf905de7dc71551 146 PRINTS PR00502 NUDIX hydrolase family signature 48 63 1.0E-6 T 17-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 VI35_17195 eb7e6aaa3dabfcce3bf905de7dc71551 146 PRINTS PR00502 NUDIX hydrolase family signature 34 48 1.0E-6 T 17-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 VI35_17195 eb7e6aaa3dabfcce3bf905de7dc71551 146 Pfam PF00293 NUDIX domain 7 127 5.8E-26 T 17-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 VI35_17195 eb7e6aaa3dabfcce3bf905de7dc71551 146 ProSitePatterns PS00893 Nudix box signature. 39 60 - T 17-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 VI35_21140 864050a03f8ad30aed47d7cd92deadee 79 SUPERFAMILY SSF81333 3 77 6.28E-18 T 17-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily VI35_21140 864050a03f8ad30aed47d7cd92deadee 79 Pfam PF00137 ATP synthase subunit C 11 69 1.0E-9 T 17-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 VI35_21140 864050a03f8ad30aed47d7cd92deadee 79 Gene3D G3DSA:1.20.20.10 1 79 2.3E-33 T 17-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21140 864050a03f8ad30aed47d7cd92deadee 79 PRINTS PR00124 ATP synthase C subunit signature 50 75 2.2E-8 T 17-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21140 864050a03f8ad30aed47d7cd92deadee 79 PRINTS PR00124 ATP synthase C subunit signature 12 31 2.2E-8 T 17-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21140 864050a03f8ad30aed47d7cd92deadee 79 PRINTS PR00124 ATP synthase C subunit signature 33 48 2.2E-8 T 17-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21140 864050a03f8ad30aed47d7cd92deadee 79 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 20 77 8.4E-31 T 17-10-2018 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 VI35_21140 864050a03f8ad30aed47d7cd92deadee 79 ProSitePatterns PS00605 ATP synthase c subunit signature. 40 61 - T 17-10-2018 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21140 864050a03f8ad30aed47d7cd92deadee 79 Hamap MF_01396 ATP synthase subunit c [atpH]. 10 75 13.887 T 17-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_16365 ee49238130c2a67bf59a09a782e12778 865 SUPERFAMILY SSF54556 444 516 3.38E-20 T 17-10-2018 IPR029070 Chitinase insertion domain superfamily VI35_16365 ee49238130c2a67bf59a09a782e12778 865 Pfam PF08329 Chitinase A, N-terminal domain 23 155 8.6E-56 T 17-10-2018 IPR013540 Chitinase A N-terminal GO:0004568|GO:0006032 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 VI35_16365 ee49238130c2a67bf59a09a782e12778 865 Gene3D G3DSA:3.10.50.10 443 518 7.4E-165 T 17-10-2018 IPR029070 Chitinase insertion domain superfamily VI35_16365 ee49238130c2a67bf59a09a782e12778 865 SUPERFAMILY SSF51055 819 860 1.31E-11 T 17-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VI35_16365 ee49238130c2a67bf59a09a782e12778 865 SUPERFAMILY SSF51445 134 558 5.33E-100 T 17-10-2018 IPR017853 Glycoside hydrolase superfamily VI35_16365 ee49238130c2a67bf59a09a782e12778 865 Gene3D G3DSA:2.10.10.20 817 863 1.5E-13 T 17-10-2018 VI35_16365 ee49238130c2a67bf59a09a782e12778 865 Pfam PF00704 Glycosyl hydrolases family 18 160 544 1.2E-88 T 17-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 VI35_16365 ee49238130c2a67bf59a09a782e12778 865 SUPERFAMILY SSF51055 766 815 4.05E-13 T 17-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VI35_16365 ee49238130c2a67bf59a09a782e12778 865 Gene3D G3DSA:2.60.40.10 6 130 6.1E-44 T 17-10-2018 IPR013783 Immunoglobulin-like fold VI35_16365 ee49238130c2a67bf59a09a782e12778 865 SUPERFAMILY SSF81296 24 132 9.8E-33 T 17-10-2018 IPR014756 Immunoglobulin E-set VI35_16365 ee49238130c2a67bf59a09a782e12778 865 ProSitePatterns PS01095 Chitinases family 18 active site. 307 315 - T 17-10-2018 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 VI35_16365 ee49238130c2a67bf59a09a782e12778 865 Pfam PF02010 REJ domain 575 762 3.2E-5 T 17-10-2018 IPR002859 PKD/REJ-like domain VI35_16365 ee49238130c2a67bf59a09a782e12778 865 Gene3D G3DSA:2.60.40.10 664 758 1.3E-10 T 17-10-2018 IPR013783 Immunoglobulin-like fold VI35_16365 ee49238130c2a67bf59a09a782e12778 865 Gene3D G3DSA:2.60.40.10 568 663 3.1E-19 T 17-10-2018 IPR013783 Immunoglobulin-like fold VI35_16365 ee49238130c2a67bf59a09a782e12778 865 SMART SM00636 158 544 4.9E-162 T 17-10-2018 IPR011583 Chitinase II GO:0008061 VI35_16365 ee49238130c2a67bf59a09a782e12778 865 Gene3D G3DSA:3.20.20.80 158 550 7.4E-165 T 17-10-2018 VI35_16365 ee49238130c2a67bf59a09a782e12778 865 SMART SM00089 51 133 1.7E-6 T 17-10-2018 IPR022409 PKD/Chitinase domain VI35_16365 ee49238130c2a67bf59a09a782e12778 865 SMART SM00089 668 754 4.3E-7 T 17-10-2018 IPR022409 PKD/Chitinase domain VI35_16365 ee49238130c2a67bf59a09a782e12778 865 SMART SM00089 571 661 7.0 T 17-10-2018 IPR022409 PKD/Chitinase domain VI35_16365 ee49238130c2a67bf59a09a782e12778 865 Gene3D G3DSA:2.10.10.20 770 813 2.9E-13 T 17-10-2018 VI35_16365 ee49238130c2a67bf59a09a782e12778 865 SMART SM00495 817 859 7.2E-13 T 17-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VI35_16365 ee49238130c2a67bf59a09a782e12778 865 SMART SM00495 770 813 1.9E-15 T 17-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VI35_17530 8505dbb5d5e6690b1459dd5be95ef80c 310 Gene3D G3DSA:3.40.190.10 177 274 3.5E-41 T 17-10-2018 VI35_17530 8505dbb5d5e6690b1459dd5be95ef80c 310 Gene3D G3DSA:3.40.190.10 92 299 3.5E-41 T 17-10-2018 VI35_17530 8505dbb5d5e6690b1459dd5be95ef80c 310 SUPERFAMILY SSF53850 92 302 9.87E-31 T 17-10-2018 VI35_17530 8505dbb5d5e6690b1459dd5be95ef80c 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 70 8.6E-14 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_17530 8505dbb5d5e6690b1459dd5be95ef80c 310 SUPERFAMILY SSF46785 8 88 6.26E-17 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_17530 8505dbb5d5e6690b1459dd5be95ef80c 310 Gene3D G3DSA:1.10.10.10 3 90 6.6E-20 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_17530 8505dbb5d5e6690b1459dd5be95ef80c 310 Pfam PF03466 LysR substrate binding domain 97 301 1.3E-18 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_11620 df1222652fe9c77aaab3e215cff0c6e5 188 Pfam PF00293 NUDIX domain 28 108 1.6E-13 T 17-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 VI35_11620 df1222652fe9c77aaab3e215cff0c6e5 188 SUPERFAMILY SSF55811 27 179 1.08E-32 T 17-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VI35_11620 df1222652fe9c77aaab3e215cff0c6e5 188 ProSitePatterns PS01293 Nudix CoA signature. 45 65 - T 17-10-2018 IPR000059 NUDIX hydrolase, NudL, conserved site GO:0000287|GO:0009132|GO:0016818|GO:0030145 Reactome: R-HSA-390918|Reactome: R-HSA-9033241 VI35_11620 df1222652fe9c77aaab3e215cff0c6e5 188 Gene3D G3DSA:3.90.79.10 11 186 5.9E-46 T 17-10-2018 VI35_01880 966dcb515c2a39048793e9671080a6c8 258 Pfam PF14188 Domain of unknown function (DUF4311) 25 237 1.8E-120 T 17-10-2018 IPR020042 Protein of unknown function DUF4311 VI35_01880 966dcb515c2a39048793e9671080a6c8 258 TIGRFAM TIGR03580 EF_0832: conserved hypothetical protein EF_0832/AHA_3913 2 258 1.3E-151 T 17-10-2018 IPR020042 Protein of unknown function DUF4311 VI35_01520 3200545ca387bd7adbe223d18eb0e6f7 219 Gene3D G3DSA:3.40.50.1000 3 211 6.9E-69 T 17-10-2018 IPR023214 HAD superfamily VI35_01520 3200545ca387bd7adbe223d18eb0e6f7 219 Pfam PF12710 haloacid dehalogenase-like hydrolase 4 187 1.7E-38 T 17-10-2018 VI35_01520 3200545ca387bd7adbe223d18eb0e6f7 219 SUPERFAMILY SSF56784 2 208 1.23E-26 T 17-10-2018 IPR036412 HAD-like superfamily VI35_01520 3200545ca387bd7adbe223d18eb0e6f7 219 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 3 188 1.7E-23 T 17-10-2018 VI35_01520 3200545ca387bd7adbe223d18eb0e6f7 219 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 3 200 4.1E-50 T 17-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like VI35_01520 3200545ca387bd7adbe223d18eb0e6f7 219 Gene3D G3DSA:1.20.1440.100 15 87 6.9E-69 T 17-10-2018 VI35_04155 942d1b0658cde61e804129fc2a672d00 607 Gene3D G3DSA:3.10.560.10 268 360 7.4E-10 T 17-10-2018 VI35_04155 942d1b0658cde61e804129fc2a672d00 607 Gene3D G3DSA:3.10.560.10 91 184 1.3E-8 T 17-10-2018 VI35_04155 942d1b0658cde61e804129fc2a672d00 607 Gene3D G3DSA:3.10.560.10 9 90 1.3E-8 T 17-10-2018 VI35_04155 942d1b0658cde61e804129fc2a672d00 607 Gene3D G3DSA:3.10.560.10 502 578 6.1E-10 T 17-10-2018 VI35_04155 942d1b0658cde61e804129fc2a672d00 607 Pfam PF10531 SLBB domain 283 329 4.8E-9 T 17-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_04155 942d1b0658cde61e804129fc2a672d00 607 Pfam PF10531 SLBB domain 16 58 2.0E-7 T 17-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_04155 942d1b0658cde61e804129fc2a672d00 607 SUPERFAMILY SSF142984 371 405 6.41E-5 T 17-10-2018 VI35_04155 942d1b0658cde61e804129fc2a672d00 607 Pfam PF06251 Capsule biosynthesis GfcC 370 583 2.1E-10 T 17-10-2018 IPR010425 Domain of unknown function DUF1017 VI35_20470 00e40707d3eaadeee924e51145dd07d3 154 SUPERFAMILY SSF75217 2 151 1.83E-44 T 17-10-2018 IPR029028 Alpha/beta knot methyltransferases VI35_20470 00e40707d3eaadeee924e51145dd07d3 154 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 151 32.839 T 17-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 VI35_20470 00e40707d3eaadeee924e51145dd07d3 154 Gene3D G3DSA:3.40.1280.10 1 154 9.9E-67 T 17-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VI35_20470 00e40707d3eaadeee924e51145dd07d3 154 Pfam PF00588 SpoU rRNA Methylase family 2 142 1.1E-33 T 17-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 VI35_20470 00e40707d3eaadeee924e51145dd07d3 154 TIGRFAM TIGR00185 tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltransferase 1 152 2.4E-62 T 17-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 VI35_20470 00e40707d3eaadeee924e51145dd07d3 154 PIRSF PIRSF029256 1 154 1.3E-65 T 17-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 VI35_06015 9347ee7c9c2a8c017fc3fb79532160ff 128 Pfam PF10975 Protein of unknown function (DUF2802) 58 125 7.3E-24 T 17-10-2018 IPR021244 Protein of unknown function DUF2802 VI35_16720 3cefbdcd3f1cd906e68d590aaba9b824 295 Gene3D G3DSA:3.20.20.70 1 292 6.3E-106 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_16720 3cefbdcd3f1cd906e68d590aaba9b824 295 SUPERFAMILY SSF51569 1 290 2.3E-97 T 17-10-2018 VI35_16720 3cefbdcd3f1cd906e68d590aaba9b824 295 SMART SM01130 1 290 1.6E-135 T 17-10-2018 IPR002220 DapA-like GO:0016829 VI35_16720 3cefbdcd3f1cd906e68d590aaba9b824 295 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 4 287 2.0E-106 T 17-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VI35_16720 3cefbdcd3f1cd906e68d590aaba9b824 295 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 133 163 - T 17-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 VI35_16720 3cefbdcd3f1cd906e68d590aaba9b824 295 PRINTS PR00146 Dihydrodipicolinate synthase signature 128 145 2.1E-32 T 17-10-2018 IPR002220 DapA-like GO:0016829 VI35_16720 3cefbdcd3f1cd906e68d590aaba9b824 295 PRINTS PR00146 Dihydrodipicolinate synthase signature 35 56 2.1E-32 T 17-10-2018 IPR002220 DapA-like GO:0016829 VI35_16720 3cefbdcd3f1cd906e68d590aaba9b824 295 PRINTS PR00146 Dihydrodipicolinate synthase signature 103 119 2.1E-32 T 17-10-2018 IPR002220 DapA-like GO:0016829 VI35_16720 3cefbdcd3f1cd906e68d590aaba9b824 295 PRINTS PR00146 Dihydrodipicolinate synthase signature 71 89 2.1E-32 T 17-10-2018 IPR002220 DapA-like GO:0016829 VI35_16720 3cefbdcd3f1cd906e68d590aaba9b824 295 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 38 55 - T 17-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VI35_16720 3cefbdcd3f1cd906e68d590aaba9b824 295 Pfam PF00701 Dihydrodipicolinate synthetase family 2 287 5.3E-102 T 17-10-2018 IPR002220 DapA-like GO:0016829 VI35_16720 3cefbdcd3f1cd906e68d590aaba9b824 295 PIRSF PIRSF001365 1 294 1.6E-88 T 17-10-2018 IPR002220 DapA-like GO:0016829 VI35_16720 3cefbdcd3f1cd906e68d590aaba9b824 295 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 288 62.877 T 17-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VI35_13930 06754ff51ba683dde12cf2346ab62fdc 1020 SUPERFAMILY SSF82693 40 133 6.8E-21 T 17-10-2018 VI35_13930 06754ff51ba683dde12cf2346ab62fdc 1020 Pfam PF00873 AcrB/AcrD/AcrF family 4 1005 5.9E-189 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_13930 06754ff51ba683dde12cf2346ab62fdc 1020 SUPERFAMILY SSF82714 183 262 8.5E-7 T 17-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VI35_13930 06754ff51ba683dde12cf2346ab62fdc 1020 Gene3D G3DSA:1.20.1640.10 10 500 8.5E-246 T 17-10-2018 VI35_13930 06754ff51ba683dde12cf2346ab62fdc 1020 Gene3D G3DSA:3.30.70.1430 40 792 8.5E-246 T 17-10-2018 VI35_13930 06754ff51ba683dde12cf2346ab62fdc 1020 Gene3D G3DSA:3.30.70.1320 133 324 8.5E-246 T 17-10-2018 VI35_13930 06754ff51ba683dde12cf2346ab62fdc 1020 Gene3D G3DSA:3.30.70.1430 553 646 8.5E-246 T 17-10-2018 VI35_13930 06754ff51ba683dde12cf2346ab62fdc 1020 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 6.3E-42 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_13930 06754ff51ba683dde12cf2346ab62fdc 1020 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 6.3E-42 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_13930 06754ff51ba683dde12cf2346ab62fdc 1020 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 6.3E-42 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_13930 06754ff51ba683dde12cf2346ab62fdc 1020 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 6.3E-42 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_13930 06754ff51ba683dde12cf2346ab62fdc 1020 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 6.3E-42 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_13930 06754ff51ba683dde12cf2346ab62fdc 1020 PRINTS PR00702 Acriflavin resistance protein family signature 439 462 6.3E-42 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_13930 06754ff51ba683dde12cf2346ab62fdc 1020 PRINTS PR00702 Acriflavin resistance protein family signature 464 487 6.3E-42 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_13930 06754ff51ba683dde12cf2346ab62fdc 1020 SUPERFAMILY SSF82693 149 324 2.2E-10 T 17-10-2018 VI35_13930 06754ff51ba683dde12cf2346ab62fdc 1020 Gene3D G3DSA:1.20.1640.10 501 1003 8.5E-246 T 17-10-2018 VI35_13930 06754ff51ba683dde12cf2346ab62fdc 1020 SUPERFAMILY SSF82866 778 1006 7.46E-44 T 17-10-2018 VI35_13930 06754ff51ba683dde12cf2346ab62fdc 1020 Gene3D G3DSA:3.30.70.1440 647 846 8.5E-246 T 17-10-2018 VI35_13930 06754ff51ba683dde12cf2346ab62fdc 1020 Gene3D G3DSA:3.30.2090.10 698 784 8.5E-246 T 17-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VI35_13930 06754ff51ba683dde12cf2346ab62fdc 1020 Gene3D G3DSA:3.30.2090.10 181 269 8.5E-246 T 17-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VI35_13930 06754ff51ba683dde12cf2346ab62fdc 1020 SUPERFAMILY SSF82714 697 780 3.66E-6 T 17-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VI35_13930 06754ff51ba683dde12cf2346ab62fdc 1020 SUPERFAMILY SSF82866 288 490 5.75E-37 T 17-10-2018 VI35_02335 821250cfa71c4cd45031e98b1b835da2 287 Gene3D G3DSA:3.90.1170.20 4 283 2.0E-122 T 17-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 VI35_02335 821250cfa71c4cd45031e98b1b835da2 287 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 31 117 3.0E-25 T 17-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 VI35_02335 821250cfa71c4cd45031e98b1b835da2 287 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 30 284 6.3E-95 T 17-10-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 VI35_02335 821250cfa71c4cd45031e98b1b835da2 287 SUPERFAMILY SSF51690 119 284 1.69E-60 T 17-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 VI35_02335 821250cfa71c4cd45031e98b1b835da2 287 SUPERFAMILY SSF54675 1 118 4.71E-31 T 17-10-2018 VI35_02335 821250cfa71c4cd45031e98b1b835da2 287 Gene3D G3DSA:3.20.20.70 128 274 2.0E-122 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_02335 821250cfa71c4cd45031e98b1b835da2 287 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 119 283 4.0E-60 T 17-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 VI35_02335 821250cfa71c4cd45031e98b1b835da2 287 PIRSF PIRSF006250 1 287 2.2E-103 T 17-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 VI35_13685 01ba0d1b7f1f17a67f66f44bb36414b1 180 Gene3D G3DSA:3.60.21.10 1 180 2.1E-61 T 17-10-2018 IPR029052 Metallo-dependent phosphatase-like VI35_13685 01ba0d1b7f1f17a67f66f44bb36414b1 180 TIGRFAM TIGR00040 yfcE: phosphodiesterase, MJ0936 family 1 161 2.9E-26 T 17-10-2018 IPR000979 Phosphodiesterase MJ0936/Vps29 Reactome: R-HSA-3238698 VI35_13685 01ba0d1b7f1f17a67f66f44bb36414b1 180 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 1 160 1.8E-24 T 17-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 VI35_13685 01ba0d1b7f1f17a67f66f44bb36414b1 180 SUPERFAMILY SSF56300 1 162 3.19E-36 T 17-10-2018 VI35_19190 5d3e2d179dac668fd55df10097258fd8 194 Gene3D G3DSA:3.40.50.10610 64 193 2.2E-17 T 17-10-2018 VI35_19190 5d3e2d179dac668fd55df10097258fd8 194 Pfam PF13036 Peptidoglycan-synthase activator LpoB 66 187 3.2E-15 T 17-10-2018 IPR014094 Penicillin-binding protein activator LpoB VI35_18775 6dedef9d61289799982f41992f1e2cc7 673 TIGRFAM TIGR02062 RNase_B: exoribonuclease II 1 644 7.1E-274 T 17-10-2018 IPR011804 Ribonuclease II GO:0003723|GO:0006401|GO:0008859 VI35_18775 6dedef9d61289799982f41992f1e2cc7 673 ProSitePatterns PS01175 Ribonuclease II family signature. 484 508 - T 17-10-2018 IPR022966 Ribonuclease II/R, conserved site VI35_18775 6dedef9d61289799982f41992f1e2cc7 673 Gene3D G3DSA:2.40.50.140 1 82 2.7E-26 T 17-10-2018 VI35_18775 6dedef9d61289799982f41992f1e2cc7 673 SUPERFAMILY SSF50249 8 80 3.2E-13 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_18775 6dedef9d61289799982f41992f1e2cc7 673 Hamap MF_01036 Exoribonuclease 2 [rnb]. 1 645 42.334 T 17-10-2018 IPR011804 Ribonuclease II GO:0003723|GO:0006401|GO:0008859 VI35_18775 6dedef9d61289799982f41992f1e2cc7 673 SUPERFAMILY SSF50249 561 643 4.28E-14 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_18775 6dedef9d61289799982f41992f1e2cc7 673 Gene3D G3DSA:2.40.50.640 83 155 1.1E-26 T 17-10-2018 VI35_18775 6dedef9d61289799982f41992f1e2cc7 673 SUPERFAMILY SSF50249 84 170 2.91E-26 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_18775 6dedef9d61289799982f41992f1e2cc7 673 Gene3D G3DSA:2.40.50.140 559 646 8.4E-27 T 17-10-2018 VI35_18775 6dedef9d61289799982f41992f1e2cc7 673 Pfam PF00773 RNB domain 191 516 6.2E-82 T 17-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 VI35_18775 6dedef9d61289799982f41992f1e2cc7 673 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 6 643 2.4E-189 T 17-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 VI35_18775 6dedef9d61289799982f41992f1e2cc7 673 Pfam PF08206 Ribonuclease B OB domain 24 77 1.1E-15 T 17-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain VI35_18775 6dedef9d61289799982f41992f1e2cc7 673 SUPERFAMILY SSF50249 181 556 1.17E-109 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_18775 6dedef9d61289799982f41992f1e2cc7 673 SMART SM00955 191 517 7.0E-120 T 17-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 VI35_18775 6dedef9d61289799982f41992f1e2cc7 673 SMART SM00357 23 79 7.2E-8 T 17-10-2018 IPR011129 Cold shock domain GO:0003676 VI35_03015 d471bfa68880cf651255b4de2a69a28d 381 SUPERFAMILY SSF53187 5 380 1.6E-61 T 17-10-2018 VI35_03015 d471bfa68880cf651255b4de2a69a28d 381 Pfam PF07687 Peptidase dimerisation domain 175 282 6.6E-23 T 17-10-2018 IPR011650 Peptidase M20, dimerisation domain VI35_03015 d471bfa68880cf651255b4de2a69a28d 381 Hamap MF_01108 Acetylornithine deacetylase [argE]. 1 381 60.103 T 17-10-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 VI35_03015 d471bfa68880cf651255b4de2a69a28d 381 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 73 82 - T 17-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 VI35_03015 d471bfa68880cf651255b4de2a69a28d 381 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 108 145 - T 17-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 VI35_03015 d471bfa68880cf651255b4de2a69a28d 381 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 9 376 1.1E-134 T 17-10-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 VI35_03015 d471bfa68880cf651255b4de2a69a28d 381 Gene3D G3DSA:3.30.70.360 179 294 3.6E-84 T 17-10-2018 VI35_03015 d471bfa68880cf651255b4de2a69a28d 381 Gene3D G3DSA:3.40.630.10 22 363 3.6E-84 T 17-10-2018 VI35_03015 d471bfa68880cf651255b4de2a69a28d 381 SUPERFAMILY SSF55031 179 284 8.67E-19 T 17-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain VI35_03015 d471bfa68880cf651255b4de2a69a28d 381 Pfam PF01546 Peptidase family M20/M25/M40 74 377 9.9E-34 T 17-10-2018 IPR002933 Peptidase M20 GO:0016787 VI35_04580 47b036a9d211487c67c6131a04089d78 595 Gene3D G3DSA:3.40.50.360 57 218 5.7E-48 T 17-10-2018 IPR029039 Flavoprotein-like superfamily VI35_04580 47b036a9d211487c67c6131a04089d78 595 Gene3D G3DSA:2.40.30.10 232 435 8.1E-69 T 17-10-2018 VI35_04580 47b036a9d211487c67c6131a04089d78 595 SUPERFAMILY SSF63380 228 442 4.73E-62 T 17-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VI35_04580 47b036a9d211487c67c6131a04089d78 595 Pfam PF00175 Oxidoreductase NAD-binding domain 453 559 8.8E-19 T 17-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 VI35_04580 47b036a9d211487c67c6131a04089d78 595 SUPERFAMILY SSF52218 62 208 1.92E-46 T 17-10-2018 IPR029039 Flavoprotein-like superfamily VI35_04580 47b036a9d211487c67c6131a04089d78 595 TIGRFAM TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component 8 595 1.8E-243 T 17-10-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VI35_04580 47b036a9d211487c67c6131a04089d78 595 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 452 471 5.2E-28 T 17-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VI35_04580 47b036a9d211487c67c6131a04089d78 595 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 544 552 5.2E-28 T 17-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VI35_04580 47b036a9d211487c67c6131a04089d78 595 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 381 388 5.2E-28 T 17-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VI35_04580 47b036a9d211487c67c6131a04089d78 595 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 521 537 5.2E-28 T 17-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VI35_04580 47b036a9d211487c67c6131a04089d78 595 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 269 279 5.2E-28 T 17-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VI35_04580 47b036a9d211487c67c6131a04089d78 595 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 415 424 5.2E-28 T 17-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VI35_04580 47b036a9d211487c67c6131a04089d78 595 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 490 501 5.2E-28 T 17-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VI35_04580 47b036a9d211487c67c6131a04089d78 595 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 477 486 5.2E-28 T 17-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VI35_04580 47b036a9d211487c67c6131a04089d78 595 Gene3D G3DSA:3.40.50.80 441 595 3.4E-59 T 17-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VI35_04580 47b036a9d211487c67c6131a04089d78 595 Gene3D G3DSA:1.20.990.10 279 379 8.1E-69 T 17-10-2018 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily GO:0016491|GO:0055114 VI35_04580 47b036a9d211487c67c6131a04089d78 595 SUPERFAMILY SSF52343 440 595 5.11E-52 T 17-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VI35_04580 47b036a9d211487c67c6131a04089d78 595 Pfam PF00258 Flavodoxin 65 192 8.5E-33 T 17-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 VI35_04580 47b036a9d211487c67c6131a04089d78 595 PIRSF PIRSF000207 2 595 1.6E-250 T 17-10-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VI35_04580 47b036a9d211487c67c6131a04089d78 595 Pfam PF00667 FAD binding domain 231 420 2.1E-25 T 17-10-2018 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding GO:0016491|GO:0055114 VI35_04580 47b036a9d211487c67c6131a04089d78 595 PRINTS PR00369 Flavodoxin signature 64 77 9.7E-16 T 17-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 VI35_04580 47b036a9d211487c67c6131a04089d78 595 PRINTS PR00369 Flavodoxin signature 168 187 9.7E-16 T 17-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 VI35_04580 47b036a9d211487c67c6131a04089d78 595 PRINTS PR00369 Flavodoxin signature 112 123 9.7E-16 T 17-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 VI35_04580 47b036a9d211487c67c6131a04089d78 595 PRINTS PR00369 Flavodoxin signature 144 154 9.7E-16 T 17-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 VI35_02775 4c0e2b66449f0bd303780ee4b19b1e26 412 SUPERFAMILY SSF81301 2 119 7.85E-30 T 17-10-2018 VI35_02775 4c0e2b66449f0bd303780ee4b19b1e26 412 Hamap MF_01262 CCA-adding enzyme [cca]. 1 401 42.959 T 17-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 VI35_02775 4c0e2b66449f0bd303780ee4b19b1e26 412 PIRSF PIRSF000813 1 408 2.2E-191 T 17-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 VI35_02775 4c0e2b66449f0bd303780ee4b19b1e26 412 Gene3D G3DSA:1.10.3090.10 122 407 1.9E-43 T 17-10-2018 VI35_02775 4c0e2b66449f0bd303780ee4b19b1e26 412 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 149 212 9.9E-17 T 17-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 VI35_02775 4c0e2b66449f0bd303780ee4b19b1e26 412 Pfam PF01966 HD domain 229 327 8.6E-8 T 17-10-2018 IPR006674 HD domain VI35_02775 4c0e2b66449f0bd303780ee4b19b1e26 412 SUPERFAMILY SSF81891 120 360 3.01E-54 T 17-10-2018 VI35_02775 4c0e2b66449f0bd303780ee4b19b1e26 412 Gene3D G3DSA:3.30.460.10 1 121 2.4E-27 T 17-10-2018 VI35_02775 4c0e2b66449f0bd303780ee4b19b1e26 412 Hamap MF_01261 Multifunctional CCA protein [cca]. 1 407 53.14 T 17-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 VI35_02775 4c0e2b66449f0bd303780ee4b19b1e26 412 Pfam PF01743 Poly A polymerase head domain 3 122 1.3E-17 T 17-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 VI35_08090 1b930eea31d06adab7fd1a72ad3ff0a0 602 SUPERFAMILY SSF55486 67 587 7.33E-79 T 17-10-2018 VI35_08090 1b930eea31d06adab7fd1a72ad3ff0a0 602 Pfam PF01432 Peptidase family M3 200 582 1.6E-22 T 17-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 VI35_08090 1b930eea31d06adab7fd1a72ad3ff0a0 602 Pfam PF08439 Oligopeptidase F 120 183 3.2E-5 T 17-10-2018 IPR013647 Oligopeptidase F, N-terminal domain VI35_08090 1b930eea31d06adab7fd1a72ad3ff0a0 602 Gene3D G3DSA:1.10.1370.30 60 599 4.4E-100 T 17-10-2018 VI35_10080 afe7378c0eae5c69c7d4e9035a6602c6 502 Pfam PF00005 ABC transporter 279 430 4.6E-18 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_10080 afe7378c0eae5c69c7d4e9035a6602c6 502 SUPERFAMILY SSF52540 270 488 3.43E-44 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_10080 afe7378c0eae5c69c7d4e9035a6602c6 502 Pfam PF00005 ABC transporter 25 174 1.6E-30 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_10080 afe7378c0eae5c69c7d4e9035a6602c6 502 Gene3D G3DSA:3.40.50.300 264 496 1.1E-43 T 17-10-2018 VI35_10080 afe7378c0eae5c69c7d4e9035a6602c6 502 Gene3D G3DSA:3.40.50.300 1 246 5.7E-57 T 17-10-2018 VI35_10080 afe7378c0eae5c69c7d4e9035a6602c6 502 ProSitePatterns PS00211 ABC transporters family signature. 403 417 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_10080 afe7378c0eae5c69c7d4e9035a6602c6 502 SUPERFAMILY SSF52540 8 232 8.24E-59 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_10080 afe7378c0eae5c69c7d4e9035a6602c6 502 SMART SM00382 34 222 5.9E-16 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_10080 afe7378c0eae5c69c7d4e9035a6602c6 502 SMART SM00382 285 479 0.027 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_14095 78eafe4380d1db73f21ac7eb11112e49 324 Gene3D G3DSA:3.40.190.10 26 281 1.1E-46 T 17-10-2018 VI35_14095 78eafe4380d1db73f21ac7eb11112e49 324 Gene3D G3DSA:3.40.190.10 102 197 1.1E-46 T 17-10-2018 VI35_14095 78eafe4380d1db73f21ac7eb11112e49 324 SMART SM00062 24 239 1.9E-22 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_14095 78eafe4380d1db73f21ac7eb11112e49 324 TIGRFAM TIGR01729 taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein 25 320 8.7E-140 T 17-10-2018 IPR010068 Taurine ABC transporter, substrate-binding protein TauA GO:0015734|GO:0042597 VI35_14095 78eafe4380d1db73f21ac7eb11112e49 324 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 24 251 1.3E-21 T 17-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 VI35_14095 78eafe4380d1db73f21ac7eb11112e49 324 SUPERFAMILY SSF53850 34 290 2.3E-43 T 17-10-2018 VI35_14095 78eafe4380d1db73f21ac7eb11112e49 324 Gene3D G3DSA:1.10.8.450 233 272 1.1E-46 T 17-10-2018 VI35_17355 f7045d9de58bfa47d002aa83785a8914 103 Pfam PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) 19 96 2.2E-23 T 17-10-2018 IPR011846 Cyd operon protein YbgE VI35_18040 8aca45988b7ba81a35c05755b48d433e 112 Gene3D G3DSA:3.30.70.120 1 112 2.2E-45 T 17-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal VI35_18040 8aca45988b7ba81a35c05755b48d433e 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 1.6E-42 T 17-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VI35_18040 8aca45988b7ba81a35c05755b48d433e 112 SMART SM00938 4 105 5.9E-67 T 17-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VI35_18040 8aca45988b7ba81a35c05755b48d433e 112 PIRSF PIRSF039144 1 112 7.0E-54 T 17-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VI35_18040 8aca45988b7ba81a35c05755b48d433e 112 SUPERFAMILY SSF54913 1 112 1.24E-44 T 17-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta VI35_18040 8aca45988b7ba81a35c05755b48d433e 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 17-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 VI35_18040 8aca45988b7ba81a35c05755b48d433e 112 PRINTS PR00340 P-II protein signature 2 17 5.6E-41 T 17-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VI35_18040 8aca45988b7ba81a35c05755b48d433e 112 PRINTS PR00340 P-II protein signature 23 41 5.6E-41 T 17-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VI35_18040 8aca45988b7ba81a35c05755b48d433e 112 PRINTS PR00340 P-II protein signature 52 75 5.6E-41 T 17-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VI35_18040 8aca45988b7ba81a35c05755b48d433e 112 PRINTS PR00340 P-II protein signature 83 103 5.6E-41 T 17-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VI35_18040 8aca45988b7ba81a35c05755b48d433e 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 17-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 VI35_17385 4c1155ab84172ecf2c2b97ef09e49904 204 Gene3D G3DSA:2.40.50.140 1 66 3.1E-28 T 17-10-2018 VI35_17385 4c1155ab84172ecf2c2b97ef09e49904 204 Pfam PF07499 RuvA, C-terminal domain 159 203 5.7E-16 T 17-10-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 VI35_17385 4c1155ab84172ecf2c2b97ef09e49904 204 SUPERFAMILY SSF47781 66 137 7.79E-21 T 17-10-2018 IPR010994 RuvA domain 2-like VI35_17385 4c1155ab84172ecf2c2b97ef09e49904 204 SUPERFAMILY SSF50249 1 63 6.85E-19 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_17385 4c1155ab84172ecf2c2b97ef09e49904 204 Gene3D G3DSA:1.10.8.10 157 204 4.1E-20 T 17-10-2018 VI35_17385 4c1155ab84172ecf2c2b97ef09e49904 204 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 203 5.8E-66 T 17-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 VI35_17385 4c1155ab84172ecf2c2b97ef09e49904 204 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 204 31.563 T 17-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 VI35_17385 4c1155ab84172ecf2c2b97ef09e49904 204 Pfam PF14520 Helix-hairpin-helix domain 72 130 1.8E-14 T 17-10-2018 VI35_17385 4c1155ab84172ecf2c2b97ef09e49904 204 Pfam PF01330 RuvA N terminal domain 1 62 1.8E-21 T 17-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 VI35_17385 4c1155ab84172ecf2c2b97ef09e49904 204 SUPERFAMILY SSF46929 159 203 4.71E-11 T 17-10-2018 IPR036267 RuvA, C-terminal domain superfamily VI35_17385 4c1155ab84172ecf2c2b97ef09e49904 204 Gene3D G3DSA:1.10.150.20 67 143 2.3E-26 T 17-10-2018 VI35_17385 4c1155ab84172ecf2c2b97ef09e49904 204 SMART SM00278 73 92 1.3 T 17-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 VI35_17385 4c1155ab84172ecf2c2b97ef09e49904 204 SMART SM00278 108 127 0.051 T 17-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 VI35_18330 7628350498caf46966cc7e20bc9a203c 257 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 11 226 4.1E-78 T 17-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 VI35_18330 7628350498caf46966cc7e20bc9a203c 257 Gene3D G3DSA:3.20.20.70 1 257 3.2E-99 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_18330 7628350498caf46966cc7e20bc9a203c 257 PIRSF PIRSF001357 5 251 1.7E-74 T 17-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 VI35_18330 7628350498caf46966cc7e20bc9a203c 257 Pfam PF01791 DeoC/LacD family aldolase 12 241 1.9E-47 T 17-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 VI35_18330 7628350498caf46966cc7e20bc9a203c 257 Hamap MF_00592 Deoxyribose-phosphate aldolase [deoC]. 1 257 54.227 T 17-10-2018 IPR023649 Deoxyribose-phosphate aldolase type II GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180 VI35_18330 7628350498caf46966cc7e20bc9a203c 257 SMART SM01133 10 243 9.6E-80 T 17-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 VI35_18330 7628350498caf46966cc7e20bc9a203c 257 SUPERFAMILY SSF51569 5 243 1.99E-80 T 17-10-2018 VI35_14715 db58a350c062d5a34b4ed674ed98379d 169 Gene3D G3DSA:2.70.70.10 9 169 8.4E-63 T 17-10-2018 IPR011055 Duplicated hybrid motif VI35_14715 db58a350c062d5a34b4ed674ed98379d 169 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 23 143 1.9E-50 T 17-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 VI35_14715 db58a350c062d5a34b4ed674ed98379d 169 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 85 97 - T 17-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 VI35_14715 db58a350c062d5a34b4ed674ed98379d 169 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 22 146 8.7E-50 T 17-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 VI35_14715 db58a350c062d5a34b4ed674ed98379d 169 SUPERFAMILY SSF51261 18 167 1.92E-55 T 17-10-2018 IPR011055 Duplicated hybrid motif VI35_00940 039ed2322b361810ea3a25ed0dab1b37 271 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 10 262 1.5E-92 T 17-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 VI35_00940 039ed2322b361810ea3a25ed0dab1b37 271 Pfam PF02673 Bacitracin resistance protein BacA 10 263 1.6E-85 T 17-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 VI35_00940 039ed2322b361810ea3a25ed0dab1b37 271 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 5 269 18.428 T 17-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 VI35_15270 9f7c09d0b32c8005bb757a6a69c53d38 157 ProSitePatterns PS01117 MarR-type HTH domain signature. 70 104 - T 17-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site VI35_15270 9f7c09d0b32c8005bb757a6a69c53d38 157 SMART SM00347 30 131 2.2E-21 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_15270 9f7c09d0b32c8005bb757a6a69c53d38 157 PRINTS PR00598 Bacterial regulatory protein MarR family signature 55 71 3.6E-18 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_15270 9f7c09d0b32c8005bb757a6a69c53d38 157 PRINTS PR00598 Bacterial regulatory protein MarR family signature 72 87 3.6E-18 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_15270 9f7c09d0b32c8005bb757a6a69c53d38 157 PRINTS PR00598 Bacterial regulatory protein MarR family signature 91 107 3.6E-18 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_15270 9f7c09d0b32c8005bb757a6a69c53d38 157 PRINTS PR00598 Bacterial regulatory protein MarR family signature 121 141 3.6E-18 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_15270 9f7c09d0b32c8005bb757a6a69c53d38 157 Pfam PF01047 MarR family 37 95 7.1E-12 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_15270 9f7c09d0b32c8005bb757a6a69c53d38 157 SUPERFAMILY SSF46785 7 144 9.43E-34 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_15270 9f7c09d0b32c8005bb757a6a69c53d38 157 Gene3D G3DSA:1.10.10.10 10 153 1.2E-34 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_12380 1cddf7c0164dbd641cc7eb512fda96e4 296 PIRSF PIRSF004654 1 288 3.5E-108 T 17-10-2018 IPR023605 Lipoprotein NlpI VI35_12380 1cddf7c0164dbd641cc7eb512fda96e4 296 SUPERFAMILY SSF48452 27 280 5.87E-72 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_12380 1cddf7c0164dbd641cc7eb512fda96e4 296 Gene3D G3DSA:1.25.40.10 23 286 6.2E-91 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_12380 1cddf7c0164dbd641cc7eb512fda96e4 296 SMART SM00028 95 128 2.9E-6 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_12380 1cddf7c0164dbd641cc7eb512fda96e4 296 SMART SM00028 233 266 7.6 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_12380 1cddf7c0164dbd641cc7eb512fda96e4 296 SMART SM00028 61 94 4.9 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_12380 1cddf7c0164dbd641cc7eb512fda96e4 296 SMART SM00028 129 162 300.0 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_12380 1cddf7c0164dbd641cc7eb512fda96e4 296 Pfam PF00515 Tetratricopeptide repeat 95 128 6.5E-7 T 17-10-2018 IPR001440 Tetratricopeptide repeat 1 GO:0005515 VI35_10835 658681a96952673999d5d2d337b5ca37 315 Gene3D G3DSA:3.40.50.300 1 160 2.6E-53 T 17-10-2018 VI35_10835 658681a96952673999d5d2d337b5ca37 315 SMART SM00382 21 163 9.8E-4 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_10835 658681a96952673999d5d2d337b5ca37 315 Pfam PF13177 DNA polymerase III, delta subunit 11 157 2.3E-46 T 17-10-2018 VI35_10835 658681a96952673999d5d2d337b5ca37 315 Gene3D G3DSA:1.20.272.10 222 315 6.2E-5 T 17-10-2018 VI35_10835 658681a96952673999d5d2d337b5ca37 315 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 9 192 2.5E-63 T 17-10-2018 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_10835 658681a96952673999d5d2d337b5ca37 315 SUPERFAMILY SSF48019 221 295 2.72E-8 T 17-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 VI35_10835 658681a96952673999d5d2d337b5ca37 315 Pfam PF09115 DNA polymerase III, delta subunit, C terminal 202 314 1.3E-23 T 17-10-2018 IPR015199 DNA polymerase III, delta subunit, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_10835 658681a96952673999d5d2d337b5ca37 315 SUPERFAMILY SSF52540 7 197 2.72E-47 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_12395 f01ec552f7c12e700f998714e3ea71a5 617 Gene3D G3DSA:3.30.1360.200 280 433 1.2E-51 T 17-10-2018 VI35_12395 f01ec552f7c12e700f998714e3ea71a5 617 Pfam PF02355 Protein export membrane protein 435 603 1.6E-19 T 17-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial VI35_12395 f01ec552f7c12e700f998714e3ea71a5 617 Gene3D G3DSA:3.30.70.3400 218 439 1.2E-51 T 17-10-2018 VI35_12395 f01ec552f7c12e700f998714e3ea71a5 617 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 123 603 1.5E-146 T 17-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 VI35_12395 f01ec552f7c12e700f998714e3ea71a5 617 Pfam PF13721 SecD export protein N-terminal TM region 2 103 1.8E-37 T 17-10-2018 IPR027398 SecD export protein N-terminal TM domain VI35_12395 f01ec552f7c12e700f998714e3ea71a5 617 Pfam PF07549 SecD/SecF GG Motif 116 140 8.0E-7 T 17-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site VI35_12395 f01ec552f7c12e700f998714e3ea71a5 617 PRINTS PR00702 Acriflavin resistance protein family signature 580 603 1.6E-6 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_12395 f01ec552f7c12e700f998714e3ea71a5 617 PRINTS PR00702 Acriflavin resistance protein family signature 505 529 1.6E-6 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_12395 f01ec552f7c12e700f998714e3ea71a5 617 PRINTS PR00702 Acriflavin resistance protein family signature 451 474 1.6E-6 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_12395 f01ec552f7c12e700f998714e3ea71a5 617 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 3 617 48.37 T 17-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 VI35_12395 f01ec552f7c12e700f998714e3ea71a5 617 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 347 596 1.0E-81 T 17-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VI35_12395 f01ec552f7c12e700f998714e3ea71a5 617 Gene3D G3DSA:1.20.1640.10 453 605 5.4E-6 T 17-10-2018 VI35_12395 f01ec552f7c12e700f998714e3ea71a5 617 SUPERFAMILY SSF82866 412 607 2.88E-41 T 17-10-2018 VI35_21115 06c5f50e53bb76756e2468d146f1ef44 462 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 75 1.7E-16 T 17-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VI35_21115 06c5f50e53bb76756e2468d146f1ef44 462 SUPERFAMILY SSF52540 79 350 1.41E-90 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_21115 06c5f50e53bb76756e2468d146f1ef44 462 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 132 344 1.3E-63 T 17-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VI35_21115 06c5f50e53bb76756e2468d146f1ef44 462 Gene3D G3DSA:3.40.50.300 78 346 3.2E-113 T 17-10-2018 VI35_21115 06c5f50e53bb76756e2468d146f1ef44 462 SMART SM00382 144 329 0.0037 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_21115 06c5f50e53bb76756e2468d146f1ef44 462 Gene3D G3DSA:2.40.10.170 2 77 3.7E-26 T 17-10-2018 VI35_21115 06c5f50e53bb76756e2468d146f1ef44 462 SUPERFAMILY SSF50615 1 76 1.54E-23 T 17-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VI35_21115 06c5f50e53bb76756e2468d146f1ef44 462 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 462 56.577 T 17-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 VI35_21115 06c5f50e53bb76756e2468d146f1ef44 462 SUPERFAMILY SSF47917 347 461 2.38E-54 T 17-10-2018 VI35_21115 06c5f50e53bb76756e2468d146f1ef44 462 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 335 344 - T 17-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VI35_21115 06c5f50e53bb76756e2468d146f1ef44 462 Gene3D G3DSA:1.10.1140.10 347 462 2.1E-60 T 17-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VI35_21115 06c5f50e53bb76756e2468d146f1ef44 462 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 462 2.2E-259 T 17-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 VI35_13555 845d93302e6adf9b096a9bf15a666a18 253 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 8 237 4.2E-63 T 17-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 VI35_13555 845d93302e6adf9b096a9bf15a666a18 253 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 4 252 4.5E-73 T 17-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 VI35_13555 845d93302e6adf9b096a9bf15a666a18 253 Gene3D G3DSA:3.40.1390.30 98 224 9.0E-87 T 17-10-2018 VI35_13555 845d93302e6adf9b096a9bf15a666a18 253 SUPERFAMILY SSF102705 4 252 8.37E-85 T 17-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily VI35_13555 845d93302e6adf9b096a9bf15a666a18 253 Gene3D G3DSA:3.40.1390.30 15 237 9.0E-87 T 17-10-2018 VI35_07715 dfbe796be25073ef54d5855f5b0e57d9 426 Gene3D G3DSA:1.10.443.10 198 406 1.2E-34 T 17-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VI35_07715 dfbe796be25073ef54d5855f5b0e57d9 426 SUPERFAMILY SSF56349 89 394 7.06E-45 T 17-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VI35_07715 dfbe796be25073ef54d5855f5b0e57d9 426 Pfam PF12167 Arm DNA-binding domain 14 76 1.3E-22 T 17-10-2018 IPR022000 Min27-like integrase, DNA-binding domain VI35_07715 dfbe796be25073ef54d5855f5b0e57d9 426 Pfam PF00589 Phage integrase family 199 389 5.5E-20 T 17-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VI35_18070 5f38d1d4d41276911cb6bb0e0c22d7b3 178 Gene3D G3DSA:3.40.30.10 17 178 4.6E-42 T 17-10-2018 VI35_18070 5f38d1d4d41276911cb6bb0e0c22d7b3 178 PRINTS PR01011 Glutathione peroxidase family signature 138 147 2.2E-10 T 17-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 VI35_18070 5f38d1d4d41276911cb6bb0e0c22d7b3 178 PRINTS PR01011 Glutathione peroxidase family signature 42 59 2.2E-10 T 17-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 VI35_18070 5f38d1d4d41276911cb6bb0e0c22d7b3 178 PRINTS PR01011 Glutathione peroxidase family signature 77 93 2.2E-10 T 17-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 VI35_18070 5f38d1d4d41276911cb6bb0e0c22d7b3 178 SUPERFAMILY SSF52833 29 176 2.18E-38 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_18070 5f38d1d4d41276911cb6bb0e0c22d7b3 178 Pfam PF00255 Glutathione peroxidase 29 129 1.9E-25 T 17-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 VI35_18070 5f38d1d4d41276911cb6bb0e0c22d7b3 178 PIRSF PIRSF000303 1 178 8.8E-53 T 17-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 VI35_09860 2f4c1ce0223617d9f33bac836e51c41c 344 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 5 333 42.426 T 17-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 VI35_09860 2f4c1ce0223617d9f33bac836e51c41c 344 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 5 197 8.9E-74 T 17-10-2018 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 VI35_09860 2f4c1ce0223617d9f33bac836e51c41c 344 ProSitePatterns PS00124 Fructose-1-6-bisphosphatase active site. 273 285 - T 17-10-2018 IPR020548 Fructose-1,6-bisphosphatase, active site GO:0005975|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 VI35_09860 2f4c1ce0223617d9f33bac836e51c41c 344 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 67 93 1.4E-76 T 17-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 VI35_09860 2f4c1ce0223617d9f33bac836e51c41c 344 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 151 174 1.4E-76 T 17-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 VI35_09860 2f4c1ce0223617d9f33bac836e51c41c 344 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 182 205 1.4E-76 T 17-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 VI35_09860 2f4c1ce0223617d9f33bac836e51c41c 344 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 208 235 1.4E-76 T 17-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 VI35_09860 2f4c1ce0223617d9f33bac836e51c41c 344 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 30 57 1.4E-76 T 17-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 VI35_09860 2f4c1ce0223617d9f33bac836e51c41c 344 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 307 332 1.4E-76 T 17-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 VI35_09860 2f4c1ce0223617d9f33bac836e51c41c 344 Gene3D G3DSA:3.40.190.80 200 337 7.3E-60 T 17-10-2018 VI35_09860 2f4c1ce0223617d9f33bac836e51c41c 344 PIRSF PIRSF500210 1 336 4.5E-128 T 17-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 VI35_09860 2f4c1ce0223617d9f33bac836e51c41c 344 PIRSF PIRSF000904 1 337 6.5E-125 T 17-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 VI35_09860 2f4c1ce0223617d9f33bac836e51c41c 344 Gene3D G3DSA:3.30.540.10 1 198 5.5E-74 T 17-10-2018 VI35_09860 2f4c1ce0223617d9f33bac836e51c41c 344 SUPERFAMILY SSF56655 2 331 1.97E-116 T 17-10-2018 VI35_06545 a45b3631854d8ae15cee1903be5ba307 553 SUPERFAMILY SSF50715 339 546 5.75E-75 T 17-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 VI35_06545 a45b3631854d8ae15cee1903be5ba307 553 Gene3D G3DSA:3.40.50.620 29 246 6.5E-105 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_06545 a45b3631854d8ae15cee1903be5ba307 553 Gene3D G3DSA:2.40.240.10 347 463 2.0E-78 T 17-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 VI35_06545 a45b3631854d8ae15cee1903be5ba307 553 Gene3D G3DSA:3.90.800.10 100 208 6.5E-105 T 17-10-2018 VI35_06545 a45b3631854d8ae15cee1903be5ba307 553 PRINTS PR00987 Glutamyl-tRNA synthetase signature 209 219 3.7E-10 T 17-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VI35_06545 a45b3631854d8ae15cee1903be5ba307 553 PRINTS PR00987 Glutamyl-tRNA synthetase signature 30 42 3.7E-10 T 17-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VI35_06545 a45b3631854d8ae15cee1903be5ba307 553 PRINTS PR00987 Glutamyl-tRNA synthetase signature 59 72 3.7E-10 T 17-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VI35_06545 a45b3631854d8ae15cee1903be5ba307 553 PRINTS PR00987 Glutamyl-tRNA synthetase signature 44 55 3.7E-10 T 17-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VI35_06545 a45b3631854d8ae15cee1903be5ba307 553 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 27 336 2.3E-124 T 17-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 VI35_06545 a45b3631854d8ae15cee1903be5ba307 553 SUPERFAMILY SSF52374 27 345 9.57E-102 T 17-10-2018 VI35_06545 a45b3631854d8ae15cee1903be5ba307 553 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 27 550 6.3E-290 T 17-10-2018 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 VI35_06545 a45b3631854d8ae15cee1903be5ba307 553 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 339 527 1.4E-60 T 17-10-2018 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 VI35_06545 a45b3631854d8ae15cee1903be5ba307 553 Gene3D G3DSA:1.10.1160.10 260 338 1.8E-36 T 17-10-2018 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily GO:0005524 VI35_06545 a45b3631854d8ae15cee1903be5ba307 553 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 33 44 - T 17-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_06545 a45b3631854d8ae15cee1903be5ba307 553 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 1 548 52.692 T 17-10-2018 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 VI35_06545 a45b3631854d8ae15cee1903be5ba307 553 Gene3D G3DSA:2.40.240.10 339 545 2.0E-78 T 17-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 VI35_17870 7e41c08255c3d31ce52ecb6c468a307d 324 SUPERFAMILY SSF82114 174 309 2.11E-46 T 17-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 VI35_17870 7e41c08255c3d31ce52ecb6c468a307d 324 PIRSF PIRSF004491 1 310 3.9E-105 T 17-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 VI35_17870 7e41c08255c3d31ce52ecb6c468a307d 324 Gene3D G3DSA:3.40.50.620 1 186 4.9E-59 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_17870 7e41c08255c3d31ce52ecb6c468a307d 324 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 18 305 3.4E-101 T 17-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 VI35_17870 7e41c08255c3d31ce52ecb6c468a307d 324 Pfam PF06574 FAD synthetase 12 166 5.3E-54 T 17-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 VI35_17870 7e41c08255c3d31ce52ecb6c468a307d 324 SMART SM00904 183 306 3.0E-64 T 17-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 VI35_17870 7e41c08255c3d31ce52ecb6c468a307d 324 SUPERFAMILY SSF52374 15 175 1.99E-32 T 17-10-2018 VI35_17870 7e41c08255c3d31ce52ecb6c468a307d 324 Pfam PF01687 Riboflavin kinase 184 305 1.6E-37 T 17-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 VI35_17870 7e41c08255c3d31ce52ecb6c468a307d 324 Gene3D G3DSA:2.40.30.30 188 305 2.6E-40 T 17-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 VI35_13005 22bdf4ecb2de191b9dcf2d9cf5c6dae1 714 Pfam PF00664 ABC transporter transmembrane region 164 423 5.0E-20 T 17-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 VI35_13005 22bdf4ecb2de191b9dcf2d9cf5c6dae1 714 SUPERFAMILY SSF90123 148 456 4.71E-49 T 17-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VI35_13005 22bdf4ecb2de191b9dcf2d9cf5c6dae1 714 SUPERFAMILY SSF52540 464 699 7.45E-73 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_13005 22bdf4ecb2de191b9dcf2d9cf5c6dae1 714 Gene3D G3DSA:1.20.1560.10 148 460 3.7E-53 T 17-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VI35_13005 22bdf4ecb2de191b9dcf2d9cf5c6dae1 714 SMART SM00382 501 687 1.4E-14 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_13005 22bdf4ecb2de191b9dcf2d9cf5c6dae1 714 Gene3D G3DSA:3.40.50.300 467 713 1.4E-76 T 17-10-2018 VI35_13005 22bdf4ecb2de191b9dcf2d9cf5c6dae1 714 TIGRFAM TIGR03375 type_I_sec_LssB: type I secretion system ATPase 9 704 0.0 T 17-10-2018 IPR017750 ATPase, type I secretion system VI35_13005 22bdf4ecb2de191b9dcf2d9cf5c6dae1 714 Gene3D G3DSA:3.90.70.10 5 132 6.3E-39 T 17-10-2018 VI35_13005 22bdf4ecb2de191b9dcf2d9cf5c6dae1 714 Pfam PF00005 ABC transporter 492 641 2.1E-32 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_09200 d7d2a14d2134b9bac366fcdb7a2e308c 385 SUPERFAMILY SSF54211 12 206 1.75E-62 T 17-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VI35_09200 d7d2a14d2134b9bac366fcdb7a2e308c 385 Pfam PF00288 GHMP kinases N terminal domain 117 184 1.0E-11 T 17-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 VI35_09200 d7d2a14d2134b9bac366fcdb7a2e308c 385 PRINTS PR00473 Galactokinase signature 95 106 7.8E-30 T 17-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 VI35_09200 d7d2a14d2134b9bac366fcdb7a2e308c 385 PRINTS PR00473 Galactokinase signature 266 280 7.8E-30 T 17-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 VI35_09200 d7d2a14d2134b9bac366fcdb7a2e308c 385 PRINTS PR00473 Galactokinase signature 115 133 7.8E-30 T 17-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 VI35_09200 d7d2a14d2134b9bac366fcdb7a2e308c 385 PRINTS PR00473 Galactokinase signature 30 48 7.8E-30 T 17-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 VI35_09200 d7d2a14d2134b9bac366fcdb7a2e308c 385 TIGRFAM TIGR00131 gal_kin: galactokinase 10 385 2.0E-141 T 17-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 VI35_09200 d7d2a14d2134b9bac366fcdb7a2e308c 385 ProSitePatterns PS00106 Galactokinase signature. 30 41 - T 17-10-2018 IPR019741 Galactokinase, conserved site KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 VI35_09200 d7d2a14d2134b9bac366fcdb7a2e308c 385 PRINTS PR00959 Mevalonate kinase family signature 28 52 3.4E-45 T 17-10-2018 VI35_09200 d7d2a14d2134b9bac366fcdb7a2e308c 385 PRINTS PR00959 Mevalonate kinase family signature 331 348 3.4E-45 T 17-10-2018 VI35_09200 d7d2a14d2134b9bac366fcdb7a2e308c 385 PRINTS PR00959 Mevalonate kinase family signature 122 144 3.4E-45 T 17-10-2018 VI35_09200 d7d2a14d2134b9bac366fcdb7a2e308c 385 PRINTS PR00959 Mevalonate kinase family signature 165 184 3.4E-45 T 17-10-2018 VI35_09200 d7d2a14d2134b9bac366fcdb7a2e308c 385 Gene3D G3DSA:3.30.230.10 25 204 1.8E-126 T 17-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VI35_09200 d7d2a14d2134b9bac366fcdb7a2e308c 385 Pfam PF08544 GHMP kinases C terminal 282 363 2.1E-8 T 17-10-2018 IPR013750 GHMP kinase, C-terminal domain VI35_09200 d7d2a14d2134b9bac366fcdb7a2e308c 385 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 124 135 - T 17-10-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 VI35_09200 d7d2a14d2134b9bac366fcdb7a2e308c 385 Gene3D G3DSA:3.30.70.890 205 359 1.8E-126 T 17-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily VI35_09200 d7d2a14d2134b9bac366fcdb7a2e308c 385 PIRSF PIRSF000530 2 385 9.5E-114 T 17-10-2018 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 VI35_09200 d7d2a14d2134b9bac366fcdb7a2e308c 385 Hamap MF_00246 Galactokinase [galK]. 28 384 41.66 T 17-10-2018 IPR022963 Galactokinase, bacterial GO:0004335|GO:0006012 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 VI35_09200 d7d2a14d2134b9bac366fcdb7a2e308c 385 Pfam PF10509 Galactokinase galactose-binding signature 13 61 7.1E-21 T 17-10-2018 IPR019539 Galactokinase galactose-binding domain GO:0005534 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 VI35_09200 d7d2a14d2134b9bac366fcdb7a2e308c 385 SUPERFAMILY SSF55060 209 383 3.04E-47 T 17-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily VI35_10890 b40ad3da3bb802eb2adb7705f8bf568f 186 Gene3D G3DSA:3.10.129.10 17 186 6.9E-67 T 17-10-2018 VI35_10890 b40ad3da3bb802eb2adb7705f8bf568f 186 Hamap MF_00405 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase [fabA]. 16 186 52.502 T 17-10-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VI35_10890 b40ad3da3bb802eb2adb7705f8bf568f 186 Pfam PF07977 FabA-like domain 43 172 1.5E-52 T 17-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VI35_10890 b40ad3da3bb802eb2adb7705f8bf568f 186 SUPERFAMILY SSF54637 18 183 3.53E-58 T 17-10-2018 IPR029069 HotDog domain superfamily VI35_10890 b40ad3da3bb802eb2adb7705f8bf568f 186 TIGRFAM TIGR01749 fabA: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA 19 185 3.5E-95 T 17-10-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VI35_14370 5d32ae0c971ffd6227223d4f012961fe 457 Gene3D G3DSA:1.20.1600.10 53 453 1.4E-98 T 17-10-2018 VI35_14370 5d32ae0c971ffd6227223d4f012961fe 457 SUPERFAMILY SSF56954 1 453 4.58E-87 T 17-10-2018 VI35_14370 5d32ae0c971ffd6227223d4f012961fe 457 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 15 453 4.8E-74 T 17-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 VI35_14370 5d32ae0c971ffd6227223d4f012961fe 457 Pfam PF02321 Outer membrane efflux protein 274 452 2.9E-20 T 17-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VI35_14370 5d32ae0c971ffd6227223d4f012961fe 457 Pfam PF02321 Outer membrane efflux protein 63 246 4.3E-18 T 17-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VI35_14370 5d32ae0c971ffd6227223d4f012961fe 457 Gene3D G3DSA:2.20.200.10 100 343 1.4E-98 T 17-10-2018 VI35_13010 7a00fa8a1e8e4429304325e5b402a8bb 314 Gene3D G3DSA:3.80.30.20 10 277 1.6E-16 T 17-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe VI35_13010 7a00fa8a1e8e4429304325e5b402a8bb 314 SMART SM00729 23 247 7.8E-40 T 17-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 VI35_13010 7a00fa8a1e8e4429304325e5b402a8bb 314 Pfam PF16199 Radical_SAM C-terminal domain 208 283 3.1E-19 T 17-10-2018 IPR032432 Radical SAM, C-terminal extension Reactome: R-HSA-3214847 VI35_13010 7a00fa8a1e8e4429304325e5b402a8bb 314 TIGRFAM TIGR01212 TIGR01212: radical SAM protein, TIGR01212 family 7 300 8.4E-126 T 17-10-2018 IPR005911 Protein YhcC-like GO:0051536 VI35_13010 7a00fa8a1e8e4429304325e5b402a8bb 314 Pfam PF04055 Radical SAM superfamily 43 199 1.8E-13 T 17-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VI35_13010 7a00fa8a1e8e4429304325e5b402a8bb 314 SUPERFAMILY SSF102114 13 267 6.15E-45 T 17-10-2018 VI35_11440 1ce033463ada1cefdbbbbbe84ce97cfe 249 SMART SM01144 30 223 6.9E-74 T 17-10-2018 IPR005636 DTW VI35_11440 1ce033463ada1cefdbbbbbe84ce97cfe 249 Pfam PF03942 DTW domain 32 217 8.2E-39 T 17-10-2018 IPR005636 DTW VI35_10525 3f372cf19c6dba77bdef98461655df25 717 Gene3D G3DSA:3.30.450.20 538 669 6.3E-14 T 17-10-2018 VI35_10525 3f372cf19c6dba77bdef98461655df25 717 Gene3D G3DSA:3.30.450.20 398 537 7.2E-27 T 17-10-2018 VI35_10525 3f372cf19c6dba77bdef98461655df25 717 SUPERFAMILY SSF55785 400 524 8.55E-21 T 17-10-2018 IPR035965 PAS domain superfamily VI35_10525 3f372cf19c6dba77bdef98461655df25 717 Pfam PF13188 PAS domain 540 579 1.8E-5 T 17-10-2018 IPR000014 PAS domain VI35_10525 3f372cf19c6dba77bdef98461655df25 717 Pfam PF08448 PAS fold 420 528 3.9E-21 T 17-10-2018 IPR013656 PAS fold-4 VI35_10525 3f372cf19c6dba77bdef98461655df25 717 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 411 533 9.9E-16 T 17-10-2018 IPR000014 PAS domain VI35_10525 3f372cf19c6dba77bdef98461655df25 717 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 534 658 4.7E-16 T 17-10-2018 IPR000014 PAS domain VI35_10525 3f372cf19c6dba77bdef98461655df25 717 SUPERFAMILY SSF55785 523 649 1.5E-16 T 17-10-2018 IPR035965 PAS domain superfamily VI35_10525 3f372cf19c6dba77bdef98461655df25 717 SMART SM00091 538 605 0.086 T 17-10-2018 IPR000014 PAS domain VI35_10525 3f372cf19c6dba77bdef98461655df25 717 SMART SM00091 413 479 5.7E-7 T 17-10-2018 IPR000014 PAS domain VI35_04760 0b408e81760738489ccb8b1683b7354b 156 Gene3D G3DSA:3.40.50.960 1 156 4.2E-64 T 17-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VI35_04760 0b408e81760738489ccb8b1683b7354b 156 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 14 150 4.8E-56 T 17-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VI35_04760 0b408e81760738489ccb8b1683b7354b 156 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 13 151 4.7E-56 T 17-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VI35_04760 0b408e81760738489ccb8b1683b7354b 156 SUPERFAMILY SSF52121 3 154 1.09E-60 T 17-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VI35_04760 0b408e81760738489ccb8b1683b7354b 156 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 8 154 32.212 T 17-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VI35_17660 80e9cd9af1bd3b7bbc83be3f8d600b78 544 SUPERFAMILY SSF48592 7 521 1.75E-75 T 17-10-2018 IPR027413 GroEL-like equatorial domain superfamily VI35_17660 80e9cd9af1bd3b7bbc83be3f8d600b78 544 Gene3D G3DSA:3.50.7.10 192 372 4.0E-239 T 17-10-2018 IPR027409 GroEL-like apical domain superfamily VI35_17660 80e9cd9af1bd3b7bbc83be3f8d600b78 544 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 523 1.6E-94 T 17-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 VI35_17660 80e9cd9af1bd3b7bbc83be3f8d600b78 544 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 526 1.6E-253 T 17-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 VI35_17660 80e9cd9af1bd3b7bbc83be3f8d600b78 544 SUPERFAMILY SSF54849 137 203 3.2E-24 T 17-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily VI35_17660 80e9cd9af1bd3b7bbc83be3f8d600b78 544 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 17-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 VI35_17660 80e9cd9af1bd3b7bbc83be3f8d600b78 544 Hamap MF_00600 60 kDa chaperonin [groL]. 2 541 41.223 T 17-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 VI35_17660 80e9cd9af1bd3b7bbc83be3f8d600b78 544 SUPERFAMILY SSF52029 184 376 2.27E-82 T 17-10-2018 IPR027409 GroEL-like apical domain superfamily VI35_17660 80e9cd9af1bd3b7bbc83be3f8d600b78 544 Gene3D G3DSA:1.10.560.10 8 521 4.0E-239 T 17-10-2018 IPR027413 GroEL-like equatorial domain superfamily VI35_17660 80e9cd9af1bd3b7bbc83be3f8d600b78 544 PRINTS PR00298 60kDa chaperonin signature 27 53 2.5E-74 T 17-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 VI35_17660 80e9cd9af1bd3b7bbc83be3f8d600b78 544 PRINTS PR00298 60kDa chaperonin signature 83 110 2.5E-74 T 17-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 VI35_17660 80e9cd9af1bd3b7bbc83be3f8d600b78 544 PRINTS PR00298 60kDa chaperonin signature 398 419 2.5E-74 T 17-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 VI35_17660 80e9cd9af1bd3b7bbc83be3f8d600b78 544 PRINTS PR00298 60kDa chaperonin signature 350 375 2.5E-74 T 17-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 VI35_17660 80e9cd9af1bd3b7bbc83be3f8d600b78 544 PRINTS PR00298 60kDa chaperonin signature 268 291 2.5E-74 T 17-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 VI35_17660 80e9cd9af1bd3b7bbc83be3f8d600b78 544 Gene3D G3DSA:3.30.260.10 136 410 4.0E-239 T 17-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily VI35_13145 751525770d0d674cc584b42e5f955ae6 126 Gene3D G3DSA:1.10.3830.10 4 122 1.3E-37 T 17-10-2018 IPR036945 Diacylglycerol kinase (DAGK) superfamily GO:0008610|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 VI35_13145 751525770d0d674cc584b42e5f955ae6 126 ProSitePatterns PS01069 Prokaryotic diacylglycerol kinase signature. 71 82 - T 17-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 VI35_13145 751525770d0d674cc584b42e5f955ae6 126 Pfam PF01219 Prokaryotic diacylglycerol kinase 17 117 4.6E-33 T 17-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 VI35_05080 c3bf53932d957cfa8ef578f9020bcec7 344 Gene3D G3DSA:3.40.50.300 1 138 2.9E-49 T 17-10-2018 VI35_05080 c3bf53932d957cfa8ef578f9020bcec7 344 Gene3D G3DSA:1.20.272.10 212 335 5.2E-33 T 17-10-2018 VI35_05080 c3bf53932d957cfa8ef578f9020bcec7 344 Pfam PF06144 DNA polymerase III, delta subunit 20 188 3.2E-35 T 17-10-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 VI35_05080 c3bf53932d957cfa8ef578f9020bcec7 344 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 16 328 1.3E-85 T 17-10-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 VI35_05080 c3bf53932d957cfa8ef578f9020bcec7 344 SUPERFAMILY SSF48019 210 328 2.89E-22 T 17-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 VI35_05080 c3bf53932d957cfa8ef578f9020bcec7 344 Pfam PF14840 Processivity clamp loader gamma complex DNA pol III C-term 212 328 1.1E-16 T 17-10-2018 IPR032780 DNA polymerase III subunit delta, C-terminal KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_05080 c3bf53932d957cfa8ef578f9020bcec7 344 Gene3D G3DSA:1.10.8.60 143 211 6.4E-19 T 17-10-2018 VI35_05080 c3bf53932d957cfa8ef578f9020bcec7 344 SUPERFAMILY SSF52540 1 208 5.93E-47 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_03430 fc71de93114f01efc77f3f0158e8c44f 156 SUPERFAMILY SSF48452 27 124 3.29E-16 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_03430 fc71de93114f01efc77f3f0158e8c44f 156 Gene3D G3DSA:1.25.40.10 42 150 8.2E-20 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_03430 fc71de93114f01efc77f3f0158e8c44f 156 Pfam PF12688 Tetratrico peptide repeat 34 152 1.1E-17 T 17-10-2018 VI35_03430 fc71de93114f01efc77f3f0158e8c44f 156 SMART SM00028 31 64 58.0 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_03430 fc71de93114f01efc77f3f0158e8c44f 156 SMART SM00028 68 101 0.36 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_06965 4f5be1c5d696415a251930a60239d6ac 633 TIGRFAM TIGR01273 speA: arginine decarboxylase 4 631 3.7E-244 T 17-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VI35_06965 4f5be1c5d696415a251930a60239d6ac 633 PRINTS PR01180 Arginine decarboxylase signature 541 562 1.7E-67 T 17-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VI35_06965 4f5be1c5d696415a251930a60239d6ac 633 PRINTS PR01180 Arginine decarboxylase signature 197 219 1.7E-67 T 17-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VI35_06965 4f5be1c5d696415a251930a60239d6ac 633 PRINTS PR01180 Arginine decarboxylase signature 147 162 1.7E-67 T 17-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VI35_06965 4f5be1c5d696415a251930a60239d6ac 633 PRINTS PR01180 Arginine decarboxylase signature 90 104 1.7E-67 T 17-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VI35_06965 4f5be1c5d696415a251930a60239d6ac 633 PRINTS PR01180 Arginine decarboxylase signature 324 341 1.7E-67 T 17-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VI35_06965 4f5be1c5d696415a251930a60239d6ac 633 PRINTS PR01180 Arginine decarboxylase signature 66 81 1.7E-67 T 17-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VI35_06965 4f5be1c5d696415a251930a60239d6ac 633 PRINTS PR01180 Arginine decarboxylase signature 488 513 1.7E-67 T 17-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VI35_06965 4f5be1c5d696415a251930a60239d6ac 633 PRINTS PR01180 Arginine decarboxylase signature 463 484 1.7E-67 T 17-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VI35_06965 4f5be1c5d696415a251930a60239d6ac 633 PRINTS PR01180 Arginine decarboxylase signature 173 194 1.7E-67 T 17-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VI35_06965 4f5be1c5d696415a251930a60239d6ac 633 Gene3D G3DSA:1.20.58.930 363 456 7.7E-222 T 17-10-2018 VI35_06965 4f5be1c5d696415a251930a60239d6ac 633 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 98 116 1.4E-13 T 17-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VI35_06965 4f5be1c5d696415a251930a60239d6ac 633 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 240 253 1.4E-13 T 17-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VI35_06965 4f5be1c5d696415a251930a60239d6ac 633 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 334 353 1.4E-13 T 17-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VI35_06965 4f5be1c5d696415a251930a60239d6ac 633 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 541 554 1.4E-13 T 17-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VI35_06965 4f5be1c5d696415a251930a60239d6ac 633 Gene3D G3DSA:2.40.37.10 13 565 7.7E-222 T 17-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 VI35_06965 4f5be1c5d696415a251930a60239d6ac 633 PIRSF PIRSF001336 1 633 1.9E-236 T 17-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VI35_06965 4f5be1c5d696415a251930a60239d6ac 633 Gene3D G3DSA:3.20.20.10 67 346 7.7E-222 T 17-10-2018 IPR029066 PLP-binding barrel VI35_06965 4f5be1c5d696415a251930a60239d6ac 633 SUPERFAMILY SSF51419 66 346 7.2E-65 T 17-10-2018 IPR029066 PLP-binding barrel VI35_06965 4f5be1c5d696415a251930a60239d6ac 633 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 91 344 5.8E-49 T 17-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 VI35_06965 4f5be1c5d696415a251930a60239d6ac 633 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 278 291 - T 17-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site VI35_06965 4f5be1c5d696415a251930a60239d6ac 633 Hamap MF_01417 Biosynthetic arginine decarboxylase [speA]. 2 632 40.572 T 17-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VI35_18410 5934c854852d96f3902d9c634b4d0bff 430 SMART SM01091 344 426 1.2E-26 T 17-10-2018 IPR005170 Transporter-associated domain VI35_18410 5934c854852d96f3902d9c634b4d0bff 430 Pfam PF03471 Transporter associated domain 345 421 4.7E-20 T 17-10-2018 IPR005170 Transporter-associated domain VI35_18410 5934c854852d96f3902d9c634b4d0bff 430 Gene3D G3DSA:3.10.580.10 192 343 6.1E-38 T 17-10-2018 VI35_18410 5934c854852d96f3902d9c634b4d0bff 430 Pfam PF01595 Domain of unknown function DUF21 4 195 1.2E-44 T 17-10-2018 IPR002550 CNNM, transmembrane domain VI35_18410 5934c854852d96f3902d9c634b4d0bff 430 Gene3D G3DSA:3.30.465.10 344 425 4.5E-30 T 17-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 VI35_18410 5934c854852d96f3902d9c634b4d0bff 430 Pfam PF00571 CBS domain 294 330 4.2E-4 T 17-10-2018 IPR000644 CBS domain VI35_18410 5934c854852d96f3902d9c634b4d0bff 430 SUPERFAMILY SSF56176 342 428 2.67E-21 T 17-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 VI35_18410 5934c854852d96f3902d9c634b4d0bff 430 SUPERFAMILY SSF54631 199 333 1.21E-24 T 17-10-2018 VI35_09515 4671de0386bdf10bb0bea60e78d3ce95 235 Pfam PF07702 UTRA domain 89 226 4.6E-34 T 17-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 VI35_09515 4671de0386bdf10bb0bea60e78d3ce95 235 SMART SM00345 9 68 2.0E-20 T 17-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VI35_09515 4671de0386bdf10bb0bea60e78d3ce95 235 SMART SM00866 89 228 2.1E-34 T 17-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 VI35_09515 4671de0386bdf10bb0bea60e78d3ce95 235 SUPERFAMILY SSF46785 3 72 1.64E-21 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_09515 4671de0386bdf10bb0bea60e78d3ce95 235 Pfam PF00392 Bacterial regulatory proteins, gntR family 6 68 2.2E-19 T 17-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VI35_09515 4671de0386bdf10bb0bea60e78d3ce95 235 SUPERFAMILY SSF64288 56 232 1.73E-42 T 17-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily VI35_09515 4671de0386bdf10bb0bea60e78d3ce95 235 TIGRFAM TIGR03337 phnR: phosphonate utilization transcriptional regulator PhnR 4 234 1.5E-122 T 17-10-2018 IPR017722 Phosphonate utilization transcriptional regulator PhnR VI35_09515 4671de0386bdf10bb0bea60e78d3ce95 235 Gene3D G3DSA:3.40.1410.10 74 233 3.9E-34 T 17-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily VI35_09515 4671de0386bdf10bb0bea60e78d3ce95 235 Gene3D G3DSA:1.10.10.10 1 73 1.0E-22 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_09515 4671de0386bdf10bb0bea60e78d3ce95 235 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 58 4.0E-9 T 17-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VI35_09515 4671de0386bdf10bb0bea60e78d3ce95 235 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 28 42 4.0E-9 T 17-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VI35_00260 3edeb91a3b6d527b855956ab1523ef21 212 Pfam PF01810 LysE type translocator 19 209 4.7E-43 T 17-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VI35_00260 3edeb91a3b6d527b855956ab1523ef21 212 PIRSF PIRSF006324 5 212 1.7E-49 T 17-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VI35_19950 9e391be50eabe9209c39bb482343ec28 334 PIRSF PIRSF000114 1 334 9.9E-99 T 17-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 VI35_19950 9e391be50eabe9209c39bb482343ec28 334 SUPERFAMILY SSF51735 6 181 8.41E-51 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_19950 9e391be50eabe9209c39bb482343ec28 334 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 7 162 3.5E-47 T 17-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 VI35_19950 9e391be50eabe9209c39bb482343ec28 334 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 5 325 37.452 T 17-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 VI35_19950 9e391be50eabe9209c39bb482343ec28 334 SUPERFAMILY SSF48179 183 334 2.55E-55 T 17-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VI35_19950 9e391be50eabe9209c39bb482343ec28 334 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 183 322 9.1E-51 T 17-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 VI35_19950 9e391be50eabe9209c39bb482343ec28 334 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 191 212 - T 17-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 VI35_19950 9e391be50eabe9209c39bb482343ec28 334 Gene3D G3DSA:1.10.1040.10 192 334 9.0E-52 T 17-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 VI35_19950 9e391be50eabe9209c39bb482343ec28 334 Gene3D G3DSA:3.40.50.720 2 190 1.9E-52 T 17-10-2018 VI35_19950 9e391be50eabe9209c39bb482343ec28 334 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 176 200 5.3E-44 T 17-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 VI35_19950 9e391be50eabe9209c39bb482343ec28 334 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 59 86 5.3E-44 T 17-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 VI35_19950 9e391be50eabe9209c39bb482343ec28 334 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 9 26 5.3E-44 T 17-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 VI35_19950 9e391be50eabe9209c39bb482343ec28 334 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 201 225 5.3E-44 T 17-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 VI35_19950 9e391be50eabe9209c39bb482343ec28 334 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 241 258 5.3E-44 T 17-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 VI35_19950 9e391be50eabe9209c39bb482343ec28 334 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 135 155 5.3E-44 T 17-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 VI35_15690 044202f9a2a4ee05d1ac3e6e75a36d53 350 Hamap MF_01113 DNA polymerase IV [dinB]. 1 347 35.869 T 17-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 VI35_15690 044202f9a2a4ee05d1ac3e6e75a36d53 350 Gene3D G3DSA:1.10.150.20 166 224 6.8E-17 T 17-10-2018 VI35_15690 044202f9a2a4ee05d1ac3e6e75a36d53 350 Gene3D G3DSA:3.30.1490.100 237 349 1.5E-20 T 17-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 VI35_15690 044202f9a2a4ee05d1ac3e6e75a36d53 350 Pfam PF11798 IMS family HHH motif 166 197 4.7E-9 T 17-10-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 VI35_15690 044202f9a2a4ee05d1ac3e6e75a36d53 350 SUPERFAMILY SSF100879 241 348 1.24E-19 T 17-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 VI35_15690 044202f9a2a4ee05d1ac3e6e75a36d53 350 Gene3D G3DSA:2.30.40.20 21 73 7.4E-63 T 17-10-2018 VI35_15690 044202f9a2a4ee05d1ac3e6e75a36d53 350 Pfam PF11799 impB/mucB/samB family C-terminal domain 233 334 8.5E-7 T 17-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 VI35_15690 044202f9a2a4ee05d1ac3e6e75a36d53 350 SUPERFAMILY SSF56672 1 234 1.96E-87 T 17-10-2018 VI35_15690 044202f9a2a4ee05d1ac3e6e75a36d53 350 Gene3D G3DSA:3.30.70.270 4 164 7.4E-63 T 17-10-2018 VI35_15690 044202f9a2a4ee05d1ac3e6e75a36d53 350 Pfam PF00817 impB/mucB/samB family 7 154 5.4E-48 T 17-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 VI35_16180 4c5cdc3b977860c52dc31bc3f57b551d 1035 SUPERFAMILY SSF53706 72 789 7.61E-99 T 17-10-2018 VI35_16180 4c5cdc3b977860c52dc31bc3f57b551d 1035 SMART SM00926 72 156 9.3E-15 T 17-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_16180 4c5cdc3b977860c52dc31bc3f57b551d 1035 Pfam PF01568 Molydopterin dinucleotide binding domain 897 999 1.0E-11 T 17-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 VI35_16180 4c5cdc3b977860c52dc31bc3f57b551d 1035 Gene3D G3DSA:2.40.40.20 864 1003 2.1E-20 T 17-10-2018 VI35_16180 4c5cdc3b977860c52dc31bc3f57b551d 1035 Pfam PF00384 Molybdopterin oxidoreductase 217 698 4.9E-17 T 17-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_16180 4c5cdc3b977860c52dc31bc3f57b551d 1035 SUPERFAMILY SSF50692 887 1008 5.2E-23 T 17-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily VI35_16180 4c5cdc3b977860c52dc31bc3f57b551d 1035 Gene3D G3DSA:3.40.50.740 72 742 1.1E-60 T 17-10-2018 VI35_18405 d875577fb5ec4b216982238535c72a52 971 Gene3D G3DSA:3.90.740.10 218 378 3.1E-49 T 17-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 VI35_18405 d875577fb5ec4b216982238535c72a52 971 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 35 652 1.2E-227 T 17-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_18405 d875577fb5ec4b216982238535c72a52 971 PRINTS PR00986 Valyl-tRNA synthetase signature 56 67 3.0E-34 T 17-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 VI35_18405 d875577fb5ec4b216982238535c72a52 971 PRINTS PR00986 Valyl-tRNA synthetase signature 390 403 3.0E-34 T 17-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 VI35_18405 d875577fb5ec4b216982238535c72a52 971 PRINTS PR00986 Valyl-tRNA synthetase signature 257 274 3.0E-34 T 17-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 VI35_18405 d875577fb5ec4b216982238535c72a52 971 PRINTS PR00986 Valyl-tRNA synthetase signature 521 539 3.0E-34 T 17-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 VI35_18405 d875577fb5ec4b216982238535c72a52 971 PRINTS PR00986 Valyl-tRNA synthetase signature 490 511 3.0E-34 T 17-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 VI35_18405 d875577fb5ec4b216982238535c72a52 971 Hamap MF_02004 Valine--tRNA ligase [valS]. 22 969 16.011 T 17-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 VI35_18405 d875577fb5ec4b216982238535c72a52 971 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 63 74 - T 17-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_18405 d875577fb5ec4b216982238535c72a52 971 SUPERFAMILY SSF46589 904 968 7.32E-16 T 17-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 VI35_18405 d875577fb5ec4b216982238535c72a52 971 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 904 967 1.5E-15 T 17-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 VI35_18405 d875577fb5ec4b216982238535c72a52 971 Gene3D G3DSA:1.10.730.10 596 838 1.2E-69 T 17-10-2018 VI35_18405 d875577fb5ec4b216982238535c72a52 971 Gene3D G3DSA:3.40.50.620 379 568 8.9E-43 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_18405 d875577fb5ec4b216982238535c72a52 971 SUPERFAMILY SSF47323 663 918 1.48E-67 T 17-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_18405 d875577fb5ec4b216982238535c72a52 971 SUPERFAMILY SSF52374 22 662 6.4E-137 T 17-10-2018 VI35_18405 d875577fb5ec4b216982238535c72a52 971 TIGRFAM TIGR00422 valS: valine--tRNA ligase 22 952 0.0 T 17-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 VI35_18405 d875577fb5ec4b216982238535c72a52 971 Pfam PF08264 Anticodon-binding domain of tRNA 695 846 4.2E-40 T 17-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 VI35_18405 d875577fb5ec4b216982238535c72a52 971 Gene3D G3DSA:1.10.287.380 897 969 6.8E-17 T 17-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 VI35_18405 d875577fb5ec4b216982238535c72a52 971 SUPERFAMILY SSF50677 212 384 3.14E-58 T 17-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 VI35_18405 d875577fb5ec4b216982238535c72a52 971 Gene3D G3DSA:3.40.50.620 23 217 1.1E-64 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_04565 c016b0ec6b2d1c913daa395388d1d362 333 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 42 315 4.2E-51 T 17-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 VI35_04565 c016b0ec6b2d1c913daa395388d1d362 333 Gene3D G3DSA:3.40.190.10 31 328 1.2E-128 T 17-10-2018 VI35_04565 c016b0ec6b2d1c913daa395388d1d362 333 SUPERFAMILY SSF53850 30 331 3.8E-84 T 17-10-2018 VI35_04565 c016b0ec6b2d1c913daa395388d1d362 333 Gene3D G3DSA:3.40.190.100 119 256 1.2E-128 T 17-10-2018 VI35_13405 48dc8856d775d011c8dca4af3432026c 382 Gene3D G3DSA:1.20.1250.20 3 189 5.4E-22 T 17-10-2018 VI35_13405 48dc8856d775d011c8dca4af3432026c 382 Gene3D G3DSA:1.20.1250.20 204 378 1.1E-20 T 17-10-2018 VI35_13405 48dc8856d775d011c8dca4af3432026c 382 Pfam PF07690 Major Facilitator Superfamily 11 282 1.5E-21 T 17-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VI35_13405 48dc8856d775d011c8dca4af3432026c 382 Hamap MF_01149 Uncharacterized MFS-type transporter YcaD [ycaD]. 1 382 35.944 T 17-10-2018 IPR023745 MSF-type transporter, YcaD VI35_13405 48dc8856d775d011c8dca4af3432026c 382 SUPERFAMILY SSF103473 6 372 2.62E-46 T 17-10-2018 IPR036259 MFS transporter superfamily VI35_11145 e2dafa3c4b6c9f8d87ff8cfc3fab49c0 915 Gene3D G3DSA:3.90.199.10 33 521 1.8E-235 T 17-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 VI35_11145 e2dafa3c4b6c9f8d87ff8cfc3fab49c0 915 SMART SM00434 11 499 5.8E-301 T 17-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VI35_11145 e2dafa3c4b6c9f8d87ff8cfc3fab49c0 915 SUPERFAMILY SSF101904 533 709 4.45E-66 T 17-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal VI35_11145 e2dafa3c4b6c9f8d87ff8cfc3fab49c0 915 SUPERFAMILY SSF56719 30 521 1.1E-186 T 17-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 VI35_11145 e2dafa3c4b6c9f8d87ff8cfc3fab49c0 915 Gene3D G3DSA:1.10.268.10 370 493 1.8E-235 T 17-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 VI35_11145 e2dafa3c4b6c9f8d87ff8cfc3fab49c0 915 Gene3D G3DSA:3.30.1360.40 236 333 1.8E-235 T 17-10-2018 VI35_11145 e2dafa3c4b6c9f8d87ff8cfc3fab49c0 915 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 32 506 1.2E-155 T 17-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VI35_11145 e2dafa3c4b6c9f8d87ff8cfc3fab49c0 915 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 645 688 8.9E-11 T 17-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 VI35_11145 e2dafa3c4b6c9f8d87ff8cfc3fab49c0 915 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 538 584 3.7E-10 T 17-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 VI35_11145 e2dafa3c4b6c9f8d87ff8cfc3fab49c0 915 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 782 827 1.1E-14 T 17-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 VI35_11145 e2dafa3c4b6c9f8d87ff8cfc3fab49c0 915 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 831 877 6.0E-12 T 17-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 VI35_11145 e2dafa3c4b6c9f8d87ff8cfc3fab49c0 915 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 749 775 1.0E-5 T 17-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 VI35_11145 e2dafa3c4b6c9f8d87ff8cfc3fab49c0 915 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 693 708 1.0 T 17-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 VI35_11145 e2dafa3c4b6c9f8d87ff8cfc3fab49c0 915 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 588 638 2.3E-12 T 17-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 VI35_11145 e2dafa3c4b6c9f8d87ff8cfc3fab49c0 915 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 1 879 24.747 T 17-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VI35_11145 e2dafa3c4b6c9f8d87ff8cfc3fab49c0 915 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 8 716 0.0 T 17-10-2018 VI35_11145 e2dafa3c4b6c9f8d87ff8cfc3fab49c0 915 SUPERFAMILY SSF101904 747 888 5.62E-41 T 17-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal VI35_19255 3f694b8c020a363df081b3dc18be3dbd 663 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 152 605 100.086 T 17-10-2018 IPR037509 Phosphomethylpyrimidine synthase GO:0009228|GO:0016830 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 VI35_19255 3f694b8c020a363df081b3dc18be3dbd 663 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 152 604 4.5E-222 T 17-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 VI35_19255 3f694b8c020a363df081b3dc18be3dbd 663 Pfam PF01964 Radical SAM ThiC family 153 600 7.3E-200 T 17-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 VI35_19255 3f694b8c020a363df081b3dc18be3dbd 663 Pfam PF13667 ThiC-associated domain 32 112 1.0E-30 T 17-10-2018 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 VI35_19255 3f694b8c020a363df081b3dc18be3dbd 663 Gene3D G3DSA:3.20.20.540 223 536 1.8E-154 T 17-10-2018 IPR038521 ThiC/Bza superfamily KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 VI35_13715 e285075fdf712e75b36c1bf1d73f4541 297 SUPERFAMILY SSF103481 44 134 6.02E-13 T 17-10-2018 VI35_13715 e285075fdf712e75b36c1bf1d73f4541 297 Pfam PF00892 EamA-like transporter family 7 131 3.5E-15 T 17-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VI35_13715 e285075fdf712e75b36c1bf1d73f4541 297 Pfam PF00892 EamA-like transporter family 141 281 4.4E-18 T 17-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VI35_13715 e285075fdf712e75b36c1bf1d73f4541 297 SUPERFAMILY SSF103481 187 287 1.96E-12 T 17-10-2018 VI35_20455 54f7f03a594f1d79c92a4e2e7b556a73 303 Gene3D G3DSA:1.20.1510.10 10 207 3.0E-54 T 17-10-2018 IPR027469 Cation efflux transmembrane domain superfamily VI35_20455 54f7f03a594f1d79c92a4e2e7b556a73 303 Pfam PF01545 Cation efflux family 16 207 1.2E-36 T 17-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 VI35_20455 54f7f03a594f1d79c92a4e2e7b556a73 303 SUPERFAMILY SSF161111 9 208 1.29E-47 T 17-10-2018 IPR027469 Cation efflux transmembrane domain superfamily VI35_20455 54f7f03a594f1d79c92a4e2e7b556a73 303 Pfam PF16916 Dimerisation domain of Zinc Transporter 211 287 6.9E-26 T 17-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain VI35_20455 54f7f03a594f1d79c92a4e2e7b556a73 303 Gene3D G3DSA:3.30.70.1350 208 291 4.4E-31 T 17-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 VI35_20455 54f7f03a594f1d79c92a4e2e7b556a73 303 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 15 287 4.2E-67 T 17-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 VI35_20455 54f7f03a594f1d79c92a4e2e7b556a73 303 SUPERFAMILY SSF160240 211 289 3.4E-24 T 17-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 VI35_02045 a1f0c729558102768657e04fa08fdc3a 443 SUPERFAMILY SSF52540 97 366 5.32E-92 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_02045 a1f0c729558102768657e04fa08fdc3a 443 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 351 360 - T 17-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VI35_02045 a1f0c729558102768657e04fa08fdc3a 443 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 360 1.2E-69 T 17-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VI35_02045 a1f0c729558102768657e04fa08fdc3a 443 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 12 440 8.5E-166 T 17-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VI35_02045 a1f0c729558102768657e04fa08fdc3a 443 TIGRFAM TIGR03496 FliI_clade1: flagellar protein export ATPase FliI 26 438 8.0E-189 T 17-10-2018 IPR020005 Flagellar export ATPase FliI, clade 1 GO:0016887|GO:0044780|GO:0071973 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VI35_02045 a1f0c729558102768657e04fa08fdc3a 443 Gene3D G3DSA:3.40.50.12240 17 442 6.9E-148 T 17-10-2018 VI35_05455 a5d3b73f95e9b1e05f83f93ec151ec4d 208 Pfam PF13419 Haloacid dehalogenase-like hydrolase 23 200 1.4E-32 T 17-10-2018 VI35_05455 a5d3b73f95e9b1e05f83f93ec151ec4d 208 Gene3D G3DSA:3.40.50.1000 91 207 3.9E-34 T 17-10-2018 IPR023214 HAD superfamily VI35_05455 a5d3b73f95e9b1e05f83f93ec151ec4d 208 SUPERFAMILY SSF56784 20 205 2.89E-52 T 17-10-2018 IPR036412 HAD-like superfamily VI35_05455 a5d3b73f95e9b1e05f83f93ec151ec4d 208 Gene3D G3DSA:1.10.150.240 17 90 8.6E-16 T 17-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 VI35_05455 a5d3b73f95e9b1e05f83f93ec151ec4d 208 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 20 31 4.0E-6 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_05455 a5d3b73f95e9b1e05f83f93ec151ec4d 208 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 189 202 4.0E-6 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_05455 a5d3b73f95e9b1e05f83f93ec151ec4d 208 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 162 182 4.0E-6 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_05455 a5d3b73f95e9b1e05f83f93ec151ec4d 208 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 144 160 4.0E-6 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_05455 a5d3b73f95e9b1e05f83f93ec151ec4d 208 TIGRFAM TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase 20 200 6.9E-49 T 17-10-2018 IPR010976 Beta-phosphoglucomutase hydrolase VI35_05455 a5d3b73f95e9b1e05f83f93ec151ec4d 208 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 137 200 1.6E-15 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_18695 8d2df32e158cd52f590f3f071ed4f610 288 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 47 236 1.2E-38 T 17-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VI35_18695 8d2df32e158cd52f590f3f071ed4f610 288 Pfam PF13533 Biotin-lipoyl like 48 95 2.0E-16 T 17-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VI35_18695 8d2df32e158cd52f590f3f071ed4f610 288 Gene3D G3DSA:2.40.30.170 45 237 4.9E-38 T 17-10-2018 VI35_18695 8d2df32e158cd52f590f3f071ed4f610 288 Pfam PF13437 HlyD family secretion protein 157 235 9.0E-8 T 17-10-2018 VI35_18695 8d2df32e158cd52f590f3f071ed4f610 288 SUPERFAMILY SSF111369 46 206 1.96E-24 T 17-10-2018 VI35_18695 8d2df32e158cd52f590f3f071ed4f610 288 Gene3D G3DSA:2.40.50.100 46 191 4.9E-38 T 17-10-2018 VI35_18695 8d2df32e158cd52f590f3f071ed4f610 288 Gene3D G3DSA:1.10.287.470 80 156 4.9E-38 T 17-10-2018 VI35_00865 937a43cf94ee5c25629e756db8d476d3 362 Pfam PF12698 ABC-2 family transporter protein 25 354 8.7E-38 T 17-10-2018 VI35_00865 937a43cf94ee5c25629e756db8d476d3 362 PRINTS PR00164 ABC-2 type transport system membrane protein signature 247 271 6.3E-6 T 17-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 VI35_00865 937a43cf94ee5c25629e756db8d476d3 362 PRINTS PR00164 ABC-2 type transport system membrane protein signature 304 323 6.3E-6 T 17-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 VI35_00865 937a43cf94ee5c25629e756db8d476d3 362 PRINTS PR00164 ABC-2 type transport system membrane protein signature 284 303 6.3E-6 T 17-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 VI35_06780 e063d7677d7ba9e5b270bd0a57b598c9 650 Gene3D G3DSA:3.30.565.10 358 515 3.7E-50 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_06780 e063d7677d7ba9e5b270bd0a57b598c9 650 SUPERFAMILY SSF55874 346 513 2.1E-49 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_06780 e063d7677d7ba9e5b270bd0a57b598c9 650 Gene3D G3DSA:1.10.287.130 268 355 1.9E-24 T 17-10-2018 VI35_06780 e063d7677d7ba9e5b270bd0a57b598c9 650 Gene3D G3DSA:3.30.450.20 154 267 4.8E-10 T 17-10-2018 VI35_06780 e063d7677d7ba9e5b270bd0a57b598c9 650 Gene3D G3DSA:3.40.50.12740 533 650 2.1E-42 T 17-10-2018 VI35_06780 e063d7677d7ba9e5b270bd0a57b598c9 650 SUPERFAMILY SSF55785 154 269 1.34E-10 T 17-10-2018 IPR035965 PAS domain superfamily VI35_06780 e063d7677d7ba9e5b270bd0a57b598c9 650 SUPERFAMILY SSF52172 534 650 2.56E-40 T 17-10-2018 IPR011006 CheY-like superfamily VI35_06780 e063d7677d7ba9e5b270bd0a57b598c9 650 SMART SM00448 534 645 7.1E-38 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_06780 e063d7677d7ba9e5b270bd0a57b598c9 650 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 404 512 1.6E-30 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_06780 e063d7677d7ba9e5b270bd0a57b598c9 650 PRINTS PR00344 Bacterial sensor protein C-terminal signature 458 468 2.6E-18 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_06780 e063d7677d7ba9e5b270bd0a57b598c9 650 PRINTS PR00344 Bacterial sensor protein C-terminal signature 499 512 2.6E-18 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_06780 e063d7677d7ba9e5b270bd0a57b598c9 650 PRINTS PR00344 Bacterial sensor protein C-terminal signature 475 493 2.6E-18 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_06780 e063d7677d7ba9e5b270bd0a57b598c9 650 PRINTS PR00344 Bacterial sensor protein C-terminal signature 440 454 2.6E-18 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_06780 e063d7677d7ba9e5b270bd0a57b598c9 650 SUPERFAMILY SSF47384 277 357 6.47E-19 T 17-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VI35_06780 e063d7677d7ba9e5b270bd0a57b598c9 650 Pfam PF00512 His Kinase A (phospho-acceptor) domain 292 356 5.7E-14 T 17-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VI35_06780 e063d7677d7ba9e5b270bd0a57b598c9 650 SMART SM00387 404 515 4.8E-37 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_06780 e063d7677d7ba9e5b270bd0a57b598c9 650 SMART SM00388 292 357 1.2E-16 T 17-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VI35_06780 e063d7677d7ba9e5b270bd0a57b598c9 650 Pfam PF00072 Response regulator receiver domain 536 643 1.9E-29 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_02115 9385a746925bdac5f66ab2eccfac7e1c 439 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 376 438 2.2E-11 T 17-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain VI35_02115 9385a746925bdac5f66ab2eccfac7e1c 439 PRINTS PR01005 Flagellar hook-associated protein signature 120 140 4.0E-19 T 17-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 VI35_02115 9385a746925bdac5f66ab2eccfac7e1c 439 PRINTS PR01005 Flagellar hook-associated protein signature 10 33 4.0E-19 T 17-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 VI35_02115 9385a746925bdac5f66ab2eccfac7e1c 439 PRINTS PR01005 Flagellar hook-associated protein signature 153 177 4.0E-19 T 17-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 VI35_02115 9385a746925bdac5f66ab2eccfac7e1c 439 PRINTS PR01005 Flagellar hook-associated protein signature 211 229 4.0E-19 T 17-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 VI35_02115 9385a746925bdac5f66ab2eccfac7e1c 439 Pfam PF00460 Flagella basal body rod protein 4 33 4.1E-6 T 17-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 VI35_02115 9385a746925bdac5f66ab2eccfac7e1c 439 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 2 438 2.1E-99 T 17-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 VI35_02115 9385a746925bdac5f66ab2eccfac7e1c 439 SUPERFAMILY SSF64518 163 439 6.28E-26 T 17-10-2018 VI35_13805 24fc459945678bddc0faaba68e177cf5 301 SUPERFAMILY SSF53448 4 290 1.65E-86 T 17-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VI35_13805 24fc459945678bddc0faaba68e177cf5 301 Gene3D G3DSA:3.90.550.10 1 295 6.7E-82 T 17-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VI35_13805 24fc459945678bddc0faaba68e177cf5 301 Pfam PF00483 Nucleotidyl transferase 5 240 3.6E-63 T 17-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 VI35_13805 24fc459945678bddc0faaba68e177cf5 301 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 5 290 6.7E-142 T 17-10-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 VI35_08460 528d55ecdfd2d0b49413887e3350a7d7 201 TIGRFAM TIGR03360 VI_minor_1: type VI secretion-associated protein, VC_A0118 family 24 201 1.1E-71 T 17-10-2018 IPR017738 Type VI secretion system-associated, VCA0118 VI35_08460 528d55ecdfd2d0b49413887e3350a7d7 201 Pfam PF11319 Type VI secretion system VasI, EvfG, VC_A0118 28 201 3.5E-48 T 17-10-2018 IPR017738 Type VI secretion system-associated, VCA0118 VI35_06750 9442409aa013d13d0a2580869c327ca7 818 SUPERFAMILY SSF56645 121 356 1.57E-44 T 17-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 VI35_06750 9442409aa013d13d0a2580869c327ca7 818 Gene3D G3DSA:1.20.140.10 361 508 4.6E-100 T 17-10-2018 VI35_06750 9442409aa013d13d0a2580869c327ca7 818 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 361 508 9.4E-12 T 17-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 VI35_06750 9442409aa013d13d0a2580869c327ca7 818 Gene3D G3DSA:2.40.110.10 237 360 4.6E-100 T 17-10-2018 VI35_06750 9442409aa013d13d0a2580869c327ca7 818 Pfam PF09317 Domain of unknown function (DUF1974) 515 797 7.8E-118 T 17-10-2018 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type GO:0003995|GO:0033539|GO:0055114 KEGG: 00071+1.3.8.8+1.3.8.7|KEGG: 00280+1.3.8.7|KEGG: 00410+1.3.8.7|KEGG: 00640+1.3.8.7|MetaCyc: PWY-7094|MetaCyc: PWY-7654 VI35_06750 9442409aa013d13d0a2580869c327ca7 818 SUPERFAMILY SSF47203 361 508 3.22E-22 T 17-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 VI35_06750 9442409aa013d13d0a2580869c327ca7 818 Gene3D G3DSA:1.10.540.10 123 236 4.6E-100 T 17-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 VI35_06750 9442409aa013d13d0a2580869c327ca7 818 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 136 233 1.3E-15 T 17-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 VI35_05430 94944ffcd7d65e8e29f92806581aa002 405 SUPERFAMILY SSF53383 16 400 1.2E-126 T 17-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VI35_05430 94944ffcd7d65e8e29f92806581aa002 405 Pfam PF00202 Aminotransferase class-III 19 399 1.7E-127 T 17-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VI35_05430 94944ffcd7d65e8e29f92806581aa002 405 Gene3D G3DSA:3.90.1150.10 24 392 2.8E-150 T 17-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VI35_05430 94944ffcd7d65e8e29f92806581aa002 405 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 15 402 69.641 T 17-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 VI35_05430 94944ffcd7d65e8e29f92806581aa002 405 Gene3D G3DSA:3.40.640.10 59 304 2.8E-150 T 17-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VI35_05430 94944ffcd7d65e8e29f92806581aa002 405 TIGRFAM TIGR03246 arg_catab_astC: succinylornithine transaminase family 7 403 8.4E-215 T 17-10-2018 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria GO:0006520|GO:0008483|GO:0030170 VI35_05430 94944ffcd7d65e8e29f92806581aa002 405 PIRSF PIRSF000521 166 402 2.4E-34 T 17-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VI35_05430 94944ffcd7d65e8e29f92806581aa002 405 PIRSF PIRSF000521 28 157 2.3E-7 T 17-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VI35_05430 94944ffcd7d65e8e29f92806581aa002 405 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 222 259 - T 17-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VI35_05430 94944ffcd7d65e8e29f92806581aa002 405 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 16 399 8.3E-151 T 17-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 VI35_02420 aae628f04593350f58ad4e9662e5a8ae 372 Gene3D G3DSA:3.40.50.300 4 207 3.4E-61 T 17-10-2018 VI35_02420 aae628f04593350f58ad4e9662e5a8ae 372 Gene3D G3DSA:3.30.1220.10 244 351 2.0E-17 T 17-10-2018 IPR036627 CobW-like, C-terminal domain superfamily VI35_02420 aae628f04593350f58ad4e9662e5a8ae 372 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 258 351 2.6E-18 T 17-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal VI35_02420 aae628f04593350f58ad4e9662e5a8ae 372 SUPERFAMILY SSF52540 5 208 4.02E-31 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_02420 aae628f04593350f58ad4e9662e5a8ae 372 SMART SM00833 258 352 1.3E-25 T 17-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal VI35_02420 aae628f04593350f58ad4e9662e5a8ae 372 SUPERFAMILY SSF90002 258 348 2.75E-18 T 17-10-2018 VI35_02420 aae628f04593350f58ad4e9662e5a8ae 372 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 7 187 5.8E-47 T 17-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain VI35_10820 fc99e140896698555c9cf4456b546222 281 SUPERFAMILY SSF56752 16 268 1.11E-68 T 17-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 VI35_10820 fc99e140896698555c9cf4456b546222 281 TIGRFAM TIGR03461 pabC_Proteo: aminodeoxychorismate lyase 15 275 8.1E-102 T 17-10-2018 IPR017824 Aminodeoxychorismate lyase, class IV GO:0008696|GO:0030170|GO:0046656 KEGG: 00790+4.1.3.38|MetaCyc: PWY-6543 VI35_10820 fc99e140896698555c9cf4456b546222 281 Pfam PF01063 Amino-transferase class IV 36 259 2.6E-47 T 17-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 VI35_10820 fc99e140896698555c9cf4456b546222 281 Gene3D G3DSA:3.20.10.10 121 280 3.1E-48 T 17-10-2018 VI35_10820 fc99e140896698555c9cf4456b546222 281 Gene3D G3DSA:3.30.470.10 14 119 3.0E-29 T 17-10-2018 VI35_13910 1ae4d1c8ace5335029f38052b81b5bcc 322 Gene3D G3DSA:3.30.420.40 7 309 1.3E-113 T 17-10-2018 VI35_13910 1ae4d1c8ace5335029f38052b81b5bcc 322 SUPERFAMILY SSF53067 6 317 2.4E-63 T 17-10-2018 VI35_13910 1ae4d1c8ace5335029f38052b81b5bcc 322 Hamap MF_00524 Glucokinase [glk]. 5 317 34.644 T 17-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 VI35_13910 1ae4d1c8ace5335029f38052b81b5bcc 322 Pfam PF02685 Glucokinase 7 316 1.1E-118 T 17-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 VI35_13910 1ae4d1c8ace5335029f38052b81b5bcc 322 Gene3D G3DSA:3.40.367.20 101 300 1.3E-113 T 17-10-2018 VI35_13910 1ae4d1c8ace5335029f38052b81b5bcc 322 TIGRFAM TIGR00749 glk: glucokinase 7 311 1.3E-128 T 17-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 VI35_04755 f5c6afa58b557609a983aea7cb7251ac 369 Gene3D G3DSA:3.90.870.10 1 205 6.3E-86 T 17-10-2018 VI35_04755 f5c6afa58b557609a983aea7cb7251ac 369 PIRSF PIRSF001259 1 368 2.7E-128 T 17-10-2018 VI35_04755 f5c6afa58b557609a983aea7cb7251ac 369 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 1 203 38.442 T 17-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VI35_04755 f5c6afa58b557609a983aea7cb7251ac 369 SUPERFAMILY SSF55821 3 203 7.78E-86 T 17-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily VI35_04755 f5c6afa58b557609a983aea7cb7251ac 369 Pfam PF00925 GTP cyclohydrolase II 208 367 1.7E-37 T 17-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 VI35_04755 f5c6afa58b557609a983aea7cb7251ac 369 SUPERFAMILY SSF142695 205 367 1.12E-47 T 17-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 VI35_04755 f5c6afa58b557609a983aea7cb7251ac 369 Gene3D G3DSA:3.40.50.10990 206 368 2.6E-29 T 17-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 VI35_04755 f5c6afa58b557609a983aea7cb7251ac 369 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 7 198 8.4E-83 T 17-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VI35_04755 f5c6afa58b557609a983aea7cb7251ac 369 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 5 199 6.9E-74 T 17-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VI35_15555 b5d446bdc975a1e95465c9a6c00b40c2 880 Gene3D G3DSA:1.10.3210.10 440 580 2.2E-6 T 17-10-2018 VI35_15555 b5d446bdc975a1e95465c9a6c00b40c2 880 SMART SM00471 448 595 8.4E-7 T 17-10-2018 IPR003607 HD/PDEase domain VI35_15555 b5d446bdc975a1e95465c9a6c00b40c2 880 SUPERFAMILY SSF109604 420 618 1.29E-13 T 17-10-2018 VI35_15555 b5d446bdc975a1e95465c9a6c00b40c2 880 SUPERFAMILY SSF55021 691 764 2.66E-7 T 17-10-2018 VI35_15555 b5d446bdc975a1e95465c9a6c00b40c2 880 Pfam PF01909 Nucleotidyltransferase domain 60 122 6.0E-6 T 17-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 VI35_15555 b5d446bdc975a1e95465c9a6c00b40c2 880 SUPERFAMILY SSF55021 798 866 7.25E-9 T 17-10-2018 VI35_15555 b5d446bdc975a1e95465c9a6c00b40c2 880 SUPERFAMILY SSF81301 38 168 2.68E-22 T 17-10-2018 VI35_15555 b5d446bdc975a1e95465c9a6c00b40c2 880 Pfam PF01966 HD domain 486 585 4.7E-11 T 17-10-2018 IPR006674 HD domain VI35_15555 b5d446bdc975a1e95465c9a6c00b40c2 880 SUPERFAMILY SSF81593 199 313 3.45E-10 T 17-10-2018 VI35_15555 b5d446bdc975a1e95465c9a6c00b40c2 880 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 32 870 3.6E-301 T 17-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 VI35_15555 b5d446bdc975a1e95465c9a6c00b40c2 880 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 880 334.795 T 17-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 VI35_15555 b5d446bdc975a1e95465c9a6c00b40c2 880 Pfam PF08335 GlnD PII-uridylyltransferase 178 316 1.6E-35 T 17-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 VI35_15555 b5d446bdc975a1e95465c9a6c00b40c2 880 PIRSF PIRSF006288 11 877 0.0 T 17-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 VI35_09825 8f2c1d6508ec383639f12a97e95d92d8 456 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 213 238 - T 17-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 VI35_09825 8f2c1d6508ec383639f12a97e95d92d8 456 Gene3D G3DSA:3.80.10.10 7 101 2.1E-15 T 17-10-2018 IPR032675 Leucine-rich repeat domain superfamily VI35_09825 8f2c1d6508ec383639f12a97e95d92d8 456 Gene3D G3DSA:3.80.10.10 102 191 1.8E-19 T 17-10-2018 IPR032675 Leucine-rich repeat domain superfamily VI35_09825 8f2c1d6508ec383639f12a97e95d92d8 456 Pfam PF13855 Leucine rich repeat 105 162 5.4E-9 T 17-10-2018 IPR001611 Leucine-rich repeat GO:0005515 VI35_09825 8f2c1d6508ec383639f12a97e95d92d8 456 Pfam PF07714 Protein tyrosine kinase 208 384 6.3E-11 T 17-10-2018 IPR001245 Serine-threonine/tyrosine-protein kinase, catalytic domain GO:0004672|GO:0006468 VI35_09825 8f2c1d6508ec383639f12a97e95d92d8 456 SUPERFAMILY SSF52058 11 188 4.59E-37 T 17-10-2018 VI35_09825 8f2c1d6508ec383639f12a97e95d92d8 456 SMART SM00364 149 168 58.0 T 17-10-2018 VI35_09825 8f2c1d6508ec383639f12a97e95d92d8 456 SMART SM00364 126 145 23.0 T 17-10-2018 VI35_09825 8f2c1d6508ec383639f12a97e95d92d8 456 SMART SM00364 35 54 27.0 T 17-10-2018 VI35_09825 8f2c1d6508ec383639f12a97e95d92d8 456 SMART SM00364 58 77 33.0 T 17-10-2018 VI35_09825 8f2c1d6508ec383639f12a97e95d92d8 456 SMART SM00364 103 122 32.0 T 17-10-2018 VI35_09825 8f2c1d6508ec383639f12a97e95d92d8 456 SUPERFAMILY SSF56112 201 448 4.99E-26 T 17-10-2018 IPR011009 Protein kinase-like domain superfamily VI35_09825 8f2c1d6508ec383639f12a97e95d92d8 456 SMART SM00369 59 81 230.0 T 17-10-2018 IPR003591 Leucine-rich repeat, typical subtype VI35_09825 8f2c1d6508ec383639f12a97e95d92d8 456 SMART SM00369 150 172 190.0 T 17-10-2018 IPR003591 Leucine-rich repeat, typical subtype VI35_09825 8f2c1d6508ec383639f12a97e95d92d8 456 SMART SM00369 102 126 18.0 T 17-10-2018 IPR003591 Leucine-rich repeat, typical subtype VI35_09825 8f2c1d6508ec383639f12a97e95d92d8 456 SMART SM00369 128 149 24.0 T 17-10-2018 IPR003591 Leucine-rich repeat, typical subtype VI35_09825 8f2c1d6508ec383639f12a97e95d92d8 456 SMART SM00369 34 58 14.0 T 17-10-2018 IPR003591 Leucine-rich repeat, typical subtype VI35_09825 8f2c1d6508ec383639f12a97e95d92d8 456 Pfam PF12799 Leucine Rich repeats (2 copies) 38 75 1.6E-6 T 17-10-2018 IPR025875 Leucine rich repeat 4 VI35_09825 8f2c1d6508ec383639f12a97e95d92d8 456 Gene3D G3DSA:1.10.510.10 310 451 8.4E-13 T 17-10-2018 VI35_09825 8f2c1d6508ec383639f12a97e95d92d8 456 Gene3D G3DSA:3.30.200.20 192 285 7.9E-9 T 17-10-2018 VI35_00645 ba2743cd0177b9f4006cbd932c930d41 418 SMART SM00919 166 402 2.0E-131 T 17-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 VI35_00645 ba2743cd0177b9f4006cbd932c930d41 418 SUPERFAMILY SSF51735 166 412 5.82E-77 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_00645 ba2743cd0177b9f4006cbd932c930d41 418 Pfam PF00390 Malic enzyme, N-terminal domain 23 119 1.4E-20 T 17-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 VI35_00645 ba2743cd0177b9f4006cbd932c930d41 418 PIRSF PIRSF000106 47 416 1.2E-67 T 17-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VI35_00645 ba2743cd0177b9f4006cbd932c930d41 418 Gene3D G3DSA:3.40.50.10380 2 163 9.5E-67 T 17-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 VI35_00645 ba2743cd0177b9f4006cbd932c930d41 418 Gene3D G3DSA:3.40.50.720 164 414 1.2E-78 T 17-10-2018 VI35_00645 ba2743cd0177b9f4006cbd932c930d41 418 SUPERFAMILY SSF53223 13 164 5.04E-51 T 17-10-2018 VI35_00645 ba2743cd0177b9f4006cbd932c930d41 418 Pfam PF03949 Malic enzyme, NAD binding domain 168 359 1.1E-22 T 17-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 VI35_00645 ba2743cd0177b9f4006cbd932c930d41 418 SMART SM01274 21 154 2.2E-73 T 17-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 VI35_00645 ba2743cd0177b9f4006cbd932c930d41 418 ProSitePatterns PS00331 Malic enzymes signature. 162 178 - T 17-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 VI35_12580 4cf402047e238d52f164d8f233e7f8e1 664 Pfam PF08376 Nitrate and nitrite sensing 44 271 9.2E-52 T 17-10-2018 IPR013587 Nitrate/nitrite sensing protein VI35_12580 4cf402047e238d52f164d8f233e7f8e1 664 SMART SM00283 378 639 1.4E-55 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_12580 4cf402047e238d52f164d8f233e7f8e1 664 SUPERFAMILY SSF58104 331 643 1.12E-70 T 17-10-2018 VI35_12580 4cf402047e238d52f164d8f233e7f8e1 664 Gene3D G3DSA:1.10.287.950 316 641 1.9E-64 T 17-10-2018 VI35_12580 4cf402047e238d52f164d8f233e7f8e1 664 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 423 606 1.9E-40 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_01975 75cea7baae15114bc380e97847b4ad19 277 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 7 275 2.0E-93 T 17-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 VI35_01975 75cea7baae15114bc380e97847b4ad19 277 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 6 198 1.4E-31 T 17-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 VI35_01975 75cea7baae15114bc380e97847b4ad19 277 Gene3D G3DSA:3.30.950.10 114 233 7.4E-41 T 17-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 VI35_01975 75cea7baae15114bc380e97847b4ad19 277 PIRSF PIRSF005917 1 277 1.0E-101 T 17-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 VI35_01975 75cea7baae15114bc380e97847b4ad19 277 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 6 226 37.335 T 17-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 VI35_01975 75cea7baae15114bc380e97847b4ad19 277 Gene3D G3DSA:3.40.1010.10 1 113 2.5E-45 T 17-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 VI35_01975 75cea7baae15114bc380e97847b4ad19 277 SUPERFAMILY SSF53790 5 224 3.14E-82 T 17-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 VI35_01975 75cea7baae15114bc380e97847b4ad19 277 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 84 95 - T 17-10-2018 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 VI35_20380 8b39d430417cf05fffddbc0d36027e7b 1024 Gene3D G3DSA:2.70.98.10 733 1003 2.4E-75 T 17-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 VI35_20380 8b39d430417cf05fffddbc0d36027e7b 1024 SUPERFAMILY SSF49303 596 702 2.95E-20 T 17-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily VI35_20380 8b39d430417cf05fffddbc0d36027e7b 1024 SUPERFAMILY SSF49303 210 318 2.06E-22 T 17-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily VI35_20380 8b39d430417cf05fffddbc0d36027e7b 1024 Gene3D G3DSA:3.20.20.80 319 599 5.9E-103 T 17-10-2018 VI35_20380 8b39d430417cf05fffddbc0d36027e7b 1024 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 43 207 8.9E-51 T 17-10-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 VI35_20380 8b39d430417cf05fffddbc0d36027e7b 1024 SUPERFAMILY SSF51445 320 598 1.45E-84 T 17-10-2018 IPR017853 Glycoside hydrolase superfamily VI35_20380 8b39d430417cf05fffddbc0d36027e7b 1024 Pfam PF00703 Glycosyl hydrolases family 2 209 318 3.1E-17 T 17-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VI35_20380 8b39d430417cf05fffddbc0d36027e7b 1024 SUPERFAMILY SSF49785 2 207 3.68E-64 T 17-10-2018 IPR008979 Galactose-binding-like domain superfamily VI35_20380 8b39d430417cf05fffddbc0d36027e7b 1024 SMART SM01038 727 998 5.0E-121 T 17-10-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 VI35_20380 8b39d430417cf05fffddbc0d36027e7b 1024 ProSitePatterns PS00719 Glycosyl hydrolases family 2 signature 1. 370 395 - T 17-10-2018 IPR023230 Glycoside hydrolase, family 2, conserved site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VI35_20380 8b39d430417cf05fffddbc0d36027e7b 1024 Gene3D G3DSA:2.60.40.10 209 318 1.1E-23 T 17-10-2018 IPR013783 Immunoglobulin-like fold VI35_20380 8b39d430417cf05fffddbc0d36027e7b 1024 Gene3D G3DSA:2.60.120.260 1 208 2.7E-76 T 17-10-2018 IPR008979 Galactose-binding-like domain superfamily VI35_20380 8b39d430417cf05fffddbc0d36027e7b 1024 ProSitePatterns PS00608 Glycosyl hydrolases family 2 acid/base catalyst. 435 449 - T 17-10-2018 IPR023232 Glycoside hydrolase, family 2, active site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VI35_20380 8b39d430417cf05fffddbc0d36027e7b 1024 Pfam PF02929 Beta galactosidase small chain 729 997 1.4E-61 T 17-10-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 VI35_20380 8b39d430417cf05fffddbc0d36027e7b 1024 PRINTS PR00132 Glycosyl hydrolase family 2 signature 506 521 2.2E-32 T 17-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VI35_20380 8b39d430417cf05fffddbc0d36027e7b 1024 PRINTS PR00132 Glycosyl hydrolase family 2 signature 135 150 2.2E-32 T 17-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VI35_20380 8b39d430417cf05fffddbc0d36027e7b 1024 PRINTS PR00132 Glycosyl hydrolase family 2 signature 329 343 2.2E-32 T 17-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VI35_20380 8b39d430417cf05fffddbc0d36027e7b 1024 PRINTS PR00132 Glycosyl hydrolase family 2 signature 435 450 2.2E-32 T 17-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VI35_20380 8b39d430417cf05fffddbc0d36027e7b 1024 PRINTS PR00132 Glycosyl hydrolase family 2 signature 360 378 2.2E-32 T 17-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VI35_20380 8b39d430417cf05fffddbc0d36027e7b 1024 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 320 603 1.5E-110 T 17-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 VI35_20380 8b39d430417cf05fffddbc0d36027e7b 1024 Pfam PF16353 Domain of unknown function(DUF4981) 615 699 6.8E-15 T 17-10-2018 IPR032312 Beta-galactosidase, domain 4 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 VI35_20380 8b39d430417cf05fffddbc0d36027e7b 1024 Gene3D G3DSA:2.60.40.10 601 701 2.2E-18 T 17-10-2018 IPR013783 Immunoglobulin-like fold VI35_20380 8b39d430417cf05fffddbc0d36027e7b 1024 SUPERFAMILY SSF74650 713 999 6.12E-80 T 17-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 VI35_00810 5feed5ccd0ac99b5a3577f2f643a70cc 611 Pfam PF00570 HRDC domain 539 605 2.5E-24 T 17-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 VI35_00810 5feed5ccd0ac99b5a3577f2f643a70cc 611 SMART SM00490 253 334 1.3E-29 T 17-10-2018 IPR001650 Helicase, C-terminal VI35_00810 5feed5ccd0ac99b5a3577f2f643a70cc 611 Gene3D G3DSA:3.40.50.300 212 343 2.5E-44 T 17-10-2018 VI35_00810 5feed5ccd0ac99b5a3577f2f643a70cc 611 SMART SM00487 25 221 6.2E-31 T 17-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VI35_00810 5feed5ccd0ac99b5a3577f2f643a70cc 611 Pfam PF16124 RecQ zinc-binding 346 407 1.6E-16 T 17-10-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain VI35_00810 5feed5ccd0ac99b5a3577f2f643a70cc 611 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 19 467 4.0E-180 T 17-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 VI35_00810 5feed5ccd0ac99b5a3577f2f643a70cc 611 SUPERFAMILY SSF52540 13 204 3.55E-44 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_00810 5feed5ccd0ac99b5a3577f2f643a70cc 611 SUPERFAMILY SSF52540 208 461 9.74E-66 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_00810 5feed5ccd0ac99b5a3577f2f643a70cc 611 Pfam PF09382 RQC domain 409 519 5.4E-41 T 17-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 VI35_00810 5feed5ccd0ac99b5a3577f2f643a70cc 611 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 19 606 2.3E-251 T 17-10-2018 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 VI35_00810 5feed5ccd0ac99b5a3577f2f643a70cc 611 Pfam PF00270 DEAD/DEAH box helicase 31 189 4.8E-18 T 17-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VI35_00810 5feed5ccd0ac99b5a3577f2f643a70cc 611 Gene3D G3DSA:1.10.150.80 532 611 3.5E-28 T 17-10-2018 VI35_00810 5feed5ccd0ac99b5a3577f2f643a70cc 611 SMART SM00341 535 611 3.5E-23 T 17-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 VI35_00810 5feed5ccd0ac99b5a3577f2f643a70cc 611 SUPERFAMILY SSF47819 535 610 2.83E-27 T 17-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 VI35_00810 5feed5ccd0ac99b5a3577f2f643a70cc 611 Pfam PF00271 Helicase conserved C-terminal domain 228 333 1.0E-19 T 17-10-2018 IPR001650 Helicase, C-terminal VI35_00810 5feed5ccd0ac99b5a3577f2f643a70cc 611 Gene3D G3DSA:1.10.10.10 344 525 8.9E-55 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_00810 5feed5ccd0ac99b5a3577f2f643a70cc 611 SMART SM00956 414 517 3.7E-55 T 17-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 VI35_00810 5feed5ccd0ac99b5a3577f2f643a70cc 611 Gene3D G3DSA:3.40.50.300 9 211 7.3E-79 T 17-10-2018 VI35_01450 be270929a3207d06584439eeb26baf3b 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 33 49 2.8E-48 T 17-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VI35_01450 be270929a3207d06584439eeb26baf3b 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 309 335 2.8E-48 T 17-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VI35_01450 be270929a3207d06584439eeb26baf3b 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 49 70 2.8E-48 T 17-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VI35_01450 be270929a3207d06584439eeb26baf3b 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 155 169 2.8E-48 T 17-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VI35_01450 be270929a3207d06584439eeb26baf3b 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 125 141 2.8E-48 T 17-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VI35_01450 be270929a3207d06584439eeb26baf3b 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 178 197 2.8E-48 T 17-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VI35_01450 be270929a3207d06584439eeb26baf3b 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 264 283 2.8E-48 T 17-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VI35_01450 be270929a3207d06584439eeb26baf3b 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 76 90 2.8E-48 T 17-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VI35_01450 be270929a3207d06584439eeb26baf3b 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 92 105 2.8E-48 T 17-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VI35_01450 be270929a3207d06584439eeb26baf3b 365 Gene3D G3DSA:3.40.190.10 30 333 5.9E-116 T 17-10-2018 VI35_01450 be270929a3207d06584439eeb26baf3b 365 PIRSF PIRSF019574 1 365 4.3E-112 T 17-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VI35_01450 be270929a3207d06584439eeb26baf3b 365 SUPERFAMILY SSF53850 27 362 4.3E-86 T 17-10-2018 VI35_01450 be270929a3207d06584439eeb26baf3b 365 Gene3D G3DSA:3.40.190.10 134 359 5.9E-116 T 17-10-2018 VI35_01450 be270929a3207d06584439eeb26baf3b 365 Pfam PF13416 Bacterial extracellular solute-binding protein 45 328 1.9E-31 T 17-10-2018 IPR006059 Bacterial extracellular solute-binding protein VI35_09315 2ef0e4a6cc35501b01896ec17e31eb2a 256 SMART SM00062 22 254 8.6E-58 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_09315 2ef0e4a6cc35501b01896ec17e31eb2a 256 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 23 250 1.6E-54 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_09315 2ef0e4a6cc35501b01896ec17e31eb2a 256 Gene3D G3DSA:3.40.190.10 25 250 2.6E-66 T 17-10-2018 VI35_09315 2ef0e4a6cc35501b01896ec17e31eb2a 256 Gene3D G3DSA:3.40.190.10 108 210 2.6E-66 T 17-10-2018 VI35_09315 2ef0e4a6cc35501b01896ec17e31eb2a 256 SUPERFAMILY SSF53850 1 254 5.83E-57 T 17-10-2018 VI35_13085 f0d3712d7d807914b7dbf882d009b117 285 Pfam PF08378 Nuclease-related domain 34 144 2.4E-26 T 17-10-2018 IPR011528 Nuclease-related domain, NERD VI35_13085 f0d3712d7d807914b7dbf882d009b117 285 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 244 278 3.3E-9 T 17-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 VI35_13085 f0d3712d7d807914b7dbf882d009b117 285 SUPERFAMILY SSF57783 241 282 4.25E-8 T 17-10-2018 VI35_05270 38b98071e5feb381e636c673343b24f0 213 Pfam PF00440 Bacterial regulatory proteins, tetR family 29 71 5.6E-10 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_05270 38b98071e5feb381e636c673343b24f0 213 Gene3D G3DSA:1.10.357.10 6 212 7.0E-51 T 17-10-2018 VI35_05270 38b98071e5feb381e636c673343b24f0 213 SUPERFAMILY SSF46689 19 85 3.69E-13 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_05270 38b98071e5feb381e636c673343b24f0 213 SUPERFAMILY SSF48498 92 211 9.34E-8 T 17-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VI35_05270 38b98071e5feb381e636c673343b24f0 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 47 70 5.4E-5 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_05270 38b98071e5feb381e636c673343b24f0 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 26 39 5.4E-5 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_03525 fa55ff5acc144dc219280bfed7c9f65c 475 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 82 97 - T 17-10-2018 IPR031157 Tr-type G domain, conserved site VI35_03525 fa55ff5acc144dc219280bfed7c9f65c 475 Hamap MF_00062 Sulfate adenylyltransferase subunit 1 [cysN]. 18 472 53.886 T 17-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 VI35_03525 fa55ff5acc144dc219280bfed7c9f65c 475 SUPERFAMILY SSF50465 330 433 2.11E-32 T 17-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal VI35_03525 fa55ff5acc144dc219280bfed7c9f65c 475 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 27 432 1.2E-199 T 17-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 VI35_03525 fa55ff5acc144dc219280bfed7c9f65c 475 Gene3D G3DSA:2.40.30.10 329 434 2.7E-35 T 17-10-2018 VI35_03525 fa55ff5acc144dc219280bfed7c9f65c 475 Gene3D G3DSA:2.40.30.10 240 327 5.9E-26 T 17-10-2018 VI35_03525 fa55ff5acc144dc219280bfed7c9f65c 475 Gene3D G3DSA:3.40.50.300 4 238 1.0E-72 T 17-10-2018 VI35_03525 fa55ff5acc144dc219280bfed7c9f65c 475 SUPERFAMILY SSF50447 242 326 3.09E-23 T 17-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VI35_03525 fa55ff5acc144dc219280bfed7c9f65c 475 PRINTS PR00315 GTP-binding elongation factor signature 162 171 9.3E-13 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_03525 fa55ff5acc144dc219280bfed7c9f65c 475 PRINTS PR00315 GTP-binding elongation factor signature 89 97 9.3E-13 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_03525 fa55ff5acc144dc219280bfed7c9f65c 475 PRINTS PR00315 GTP-binding elongation factor signature 28 41 9.3E-13 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_03525 fa55ff5acc144dc219280bfed7c9f65c 475 PRINTS PR00315 GTP-binding elongation factor signature 109 119 9.3E-13 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_03525 fa55ff5acc144dc219280bfed7c9f65c 475 PRINTS PR00315 GTP-binding elongation factor signature 125 136 9.3E-13 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_03525 fa55ff5acc144dc219280bfed7c9f65c 475 SUPERFAMILY SSF52540 20 233 2.06E-59 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_03525 fa55ff5acc144dc219280bfed7c9f65c 475 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 33 212 4.1E-14 T 17-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VI35_03525 fa55ff5acc144dc219280bfed7c9f65c 475 Pfam PF00009 Elongation factor Tu GTP binding domain 26 212 7.4E-44 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_07410 210e49f08eb6987e9e861a28e5e87588 309 Gene3D G3DSA:2.170.280.10 177 189 2.2E-76 T 17-10-2018 VI35_07410 210e49f08eb6987e9e861a28e5e87588 309 Gene3D G3DSA:1.20.58.1830 5 33 2.2E-76 T 17-10-2018 VI35_07410 210e49f08eb6987e9e861a28e5e87588 309 Gene3D G3DSA:1.10.8.410 257 308 6.0E-24 T 17-10-2018 VI35_07410 210e49f08eb6987e9e861a28e5e87588 309 SUPERFAMILY SSF64518 1 308 8.5E-97 T 17-10-2018 VI35_07410 210e49f08eb6987e9e861a28e5e87588 309 PRINTS PR00207 Flagellin signature 76 95 1.2E-25 T 17-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VI35_07410 210e49f08eb6987e9e861a28e5e87588 309 PRINTS PR00207 Flagellin signature 37 54 1.2E-25 T 17-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VI35_07410 210e49f08eb6987e9e861a28e5e87588 309 PRINTS PR00207 Flagellin signature 111 134 1.2E-25 T 17-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VI35_07410 210e49f08eb6987e9e861a28e5e87588 309 Pfam PF00700 Bacterial flagellin C-terminal helical region 225 308 1.1E-25 T 17-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VI35_07410 210e49f08eb6987e9e861a28e5e87588 309 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 141 2.4E-43 T 17-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VI35_07410 210e49f08eb6987e9e861a28e5e87588 309 Gene3D G3DSA:1.20.1330.10 45 176 2.2E-76 T 17-10-2018 VI35_14455 4cc8cb74a94185dc628000a88ebc94b5 155 SUPERFAMILY SSF55811 4 150 4.2E-29 T 17-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VI35_14455 4cc8cb74a94185dc628000a88ebc94b5 155 PRINTS PR00502 NUDIX hydrolase family signature 36 50 3.1E-5 T 17-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 VI35_14455 4cc8cb74a94185dc628000a88ebc94b5 155 PRINTS PR00502 NUDIX hydrolase family signature 50 65 3.1E-5 T 17-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 VI35_14455 4cc8cb74a94185dc628000a88ebc94b5 155 Pfam PF00293 NUDIX domain 20 122 9.0E-16 T 17-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 VI35_14455 4cc8cb74a94185dc628000a88ebc94b5 155 Gene3D G3DSA:3.90.79.10 7 154 2.1E-35 T 17-10-2018 VI35_14455 4cc8cb74a94185dc628000a88ebc94b5 155 ProSitePatterns PS00893 Nudix box signature. 41 62 - T 17-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 VI35_13920 80fc9ef50d24a9b35b1334f3e1947ac2 479 Pfam PF02887 Pyruvate kinase, alpha/beta domain 360 476 1.0E-30 T 17-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_13920 80fc9ef50d24a9b35b1334f3e1947ac2 479 Gene3D G3DSA:3.40.1380.20 339 474 4.3E-153 T 17-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_13920 80fc9ef50d24a9b35b1334f3e1947ac2 479 Pfam PF00224 Pyruvate kinase, barrel domain 3 341 1.3E-125 T 17-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_13920 80fc9ef50d24a9b35b1334f3e1947ac2 479 SUPERFAMILY SSF50800 71 166 2.09E-23 T 17-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily VI35_13920 80fc9ef50d24a9b35b1334f3e1947ac2 479 SUPERFAMILY SSF51621 2 342 5.1E-87 T 17-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 VI35_13920 80fc9ef50d24a9b35b1334f3e1947ac2 479 ProSitePatterns PS00110 Pyruvate kinase active site signature. 215 227 - T 17-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_13920 80fc9ef50d24a9b35b1334f3e1947ac2 479 Gene3D G3DSA:2.40.33.10 71 169 4.3E-153 T 17-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_13920 80fc9ef50d24a9b35b1334f3e1947ac2 479 SUPERFAMILY SSF52935 326 478 9.29E-38 T 17-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_13920 80fc9ef50d24a9b35b1334f3e1947ac2 479 PRINTS PR01050 Pyruvate kinase family signature 187 201 1.0E-49 T 17-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_13920 80fc9ef50d24a9b35b1334f3e1947ac2 479 PRINTS PR01050 Pyruvate kinase family signature 316 332 1.0E-49 T 17-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_13920 80fc9ef50d24a9b35b1334f3e1947ac2 479 PRINTS PR01050 Pyruvate kinase family signature 60 76 1.0E-49 T 17-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_13920 80fc9ef50d24a9b35b1334f3e1947ac2 479 PRINTS PR01050 Pyruvate kinase family signature 220 246 1.0E-49 T 17-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_13920 80fc9ef50d24a9b35b1334f3e1947ac2 479 PRINTS PR01050 Pyruvate kinase family signature 272 296 1.0E-49 T 17-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_13920 80fc9ef50d24a9b35b1334f3e1947ac2 479 PRINTS PR01050 Pyruvate kinase family signature 297 315 1.0E-49 T 17-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_13920 80fc9ef50d24a9b35b1334f3e1947ac2 479 PRINTS PR01050 Pyruvate kinase family signature 247 271 1.0E-49 T 17-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_13920 80fc9ef50d24a9b35b1334f3e1947ac2 479 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 3 478 2.0E-167 T 17-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_13920 80fc9ef50d24a9b35b1334f3e1947ac2 479 Gene3D G3DSA:3.20.20.60 3 338 4.3E-153 T 17-10-2018 VI35_21080 c2b35959608d07d6559a86a2e416676f 257 Pfam PF08220 DeoR-like helix-turn-helix domain 9 60 5.0E-15 T 17-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VI35_21080 c2b35959608d07d6559a86a2e416676f 257 Pfam PF00455 DeoR C terminal sensor domain 77 233 4.8E-44 T 17-10-2018 IPR014036 DeoR C-terminal sensor domain VI35_21080 c2b35959608d07d6559a86a2e416676f 257 SMART SM00420 9 61 7.1E-14 T 17-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VI35_21080 c2b35959608d07d6559a86a2e416676f 257 SUPERFAMILY SSF100950 76 234 7.18E-32 T 17-10-2018 IPR037171 NagB/RpiA transferase-like VI35_21080 c2b35959608d07d6559a86a2e416676f 257 SMART SM01134 73 234 6.2E-62 T 17-10-2018 VI35_21080 c2b35959608d07d6559a86a2e416676f 257 SUPERFAMILY SSF46785 7 66 1.45E-12 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_21080 c2b35959608d07d6559a86a2e416676f 257 ProSitePatterns PS00894 DeoR-type HTH domain signature. 9 43 - T 17-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 VI35_21080 c2b35959608d07d6559a86a2e416676f 257 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 27 41 3.7E-5 T 17-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VI35_21080 c2b35959608d07d6559a86a2e416676f 257 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 41 59 3.7E-5 T 17-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VI35_21080 c2b35959608d07d6559a86a2e416676f 257 Gene3D G3DSA:1.10.10.10 1 55 2.8E-5 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_07485 ba1e64ebb91554184e7ee8cfa9552db5 279 SUPERFAMILY SSF53807 27 271 2.83E-60 T 17-10-2018 VI35_07485 ba1e64ebb91554184e7ee8cfa9552db5 279 Pfam PF01497 Periplasmic binding protein 31 245 4.7E-28 T 17-10-2018 IPR002491 ABC transporter periplasmic binding domain VI35_07485 ba1e64ebb91554184e7ee8cfa9552db5 279 Gene3D G3DSA:3.40.50.1980 28 145 7.3E-34 T 17-10-2018 VI35_07485 ba1e64ebb91554184e7ee8cfa9552db5 279 Gene3D G3DSA:3.40.50.1980 148 272 4.4E-27 T 17-10-2018 VI35_13925 890244a5558188ee50d9d35778c52f54 347 SUPERFAMILY SSF111369 45 200 9.15E-21 T 17-10-2018 VI35_13925 890244a5558188ee50d9d35778c52f54 347 Gene3D G3DSA:1.10.287.470 85 158 2.4E-47 T 17-10-2018 VI35_13925 890244a5558188ee50d9d35778c52f54 347 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 28 343 4.6E-56 T 17-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VI35_13925 890244a5558188ee50d9d35778c52f54 347 Gene3D G3DSA:2.40.50.100 52 197 2.4E-47 T 17-10-2018 VI35_13925 890244a5558188ee50d9d35778c52f54 347 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 45 196 7.8E-9 T 17-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VI35_13925 890244a5558188ee50d9d35778c52f54 347 Gene3D G3DSA:2.40.30.170 45 268 2.4E-47 T 17-10-2018 VI35_13925 890244a5558188ee50d9d35778c52f54 347 Gene3D G3DSA:2.40.420.20 269 342 2.4E-47 T 17-10-2018 VI35_09005 9fe77682ac6db97fcbfcce41fc4af0ac 685 PRINTS PR00127 Clp protease catalytic subunit P signature 68 88 5.5E-8 T 17-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 VI35_09005 9fe77682ac6db97fcbfcce41fc4af0ac 685 PRINTS PR00127 Clp protease catalytic subunit P signature 119 138 5.5E-8 T 17-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 VI35_09005 9fe77682ac6db97fcbfcce41fc4af0ac 685 PRINTS PR00127 Clp protease catalytic subunit P signature 176 195 5.5E-8 T 17-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 VI35_09005 9fe77682ac6db97fcbfcce41fc4af0ac 685 SUPERFAMILY SSF52096 23 201 9.94E-41 T 17-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VI35_09005 9fe77682ac6db97fcbfcce41fc4af0ac 685 Gene3D G3DSA:3.90.226.10 21 210 1.0E-42 T 17-10-2018 VI35_09005 9fe77682ac6db97fcbfcce41fc4af0ac 685 Pfam PF00574 Clp protease 66 196 6.6E-31 T 17-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA VI35_12305 5d5b157fddb4aad1728fd96d204628d2 367 SUPERFAMILY SSF102114 101 306 3.4E-15 T 17-10-2018 VI35_12305 5d5b157fddb4aad1728fd96d204628d2 367 Gene3D G3DSA:1.10.150.530 5 66 1.4E-27 T 17-10-2018 VI35_12305 5d5b157fddb4aad1728fd96d204628d2 367 PIRSF PIRSF006004 3 360 1.1E-144 T 17-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 VI35_12305 5d5b157fddb4aad1728fd96d204628d2 367 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 5 347 73.742 T 17-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 VI35_12305 5d5b157fddb4aad1728fd96d204628d2 367 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 3 352 4.4E-163 T 17-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 VI35_12305 5d5b157fddb4aad1728fd96d204628d2 367 Pfam PF04055 Radical SAM superfamily 108 275 2.3E-17 T 17-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VI35_12305 5d5b157fddb4aad1728fd96d204628d2 367 Gene3D G3DSA:3.20.20.70 67 332 2.1E-110 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_01135 f47692bc56800b5eb6aa07fb746b63e2 153 SMART SM00344 7 114 2.6E-45 T 17-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 VI35_01135 f47692bc56800b5eb6aa07fb746b63e2 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 7 23 1.2E-10 T 17-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VI35_01135 f47692bc56800b5eb6aa07fb746b63e2 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 34 53 1.2E-10 T 17-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VI35_01135 f47692bc56800b5eb6aa07fb746b63e2 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 23 34 1.2E-10 T 17-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VI35_01135 f47692bc56800b5eb6aa07fb746b63e2 153 SUPERFAMILY SSF46785 5 67 3.17E-20 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_01135 f47692bc56800b5eb6aa07fb746b63e2 153 Gene3D G3DSA:3.30.70.920 59 141 1.1E-34 T 17-10-2018 VI35_01135 f47692bc56800b5eb6aa07fb746b63e2 153 SUPERFAMILY SSF54909 68 150 4.02E-19 T 17-10-2018 IPR011008 Dimeric alpha-beta barrel VI35_01135 f47692bc56800b5eb6aa07fb746b63e2 153 Pfam PF01037 Lrp/AsnC ligand binding domain 73 144 5.5E-18 T 17-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain VI35_01135 f47692bc56800b5eb6aa07fb746b63e2 153 Pfam PF13412 Winged helix-turn-helix DNA-binding 8 54 1.6E-13 T 17-10-2018 VI35_01135 f47692bc56800b5eb6aa07fb746b63e2 153 Gene3D G3DSA:1.10.10.10 2 58 6.8E-24 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_08735 464e73c0977227ad5bc6c2ef32111770 657 Gene3D G3DSA:2.40.170.20 172 657 3.2E-122 T 17-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VI35_08735 464e73c0977227ad5bc6c2ef32111770 657 Gene3D G3DSA:2.170.130.10 31 163 3.7E-42 T 17-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily VI35_08735 464e73c0977227ad5bc6c2ef32111770 657 SUPERFAMILY SSF56935 25 656 3.66E-130 T 17-10-2018 VI35_08735 464e73c0977227ad5bc6c2ef32111770 657 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 42 - T 17-10-2018 IPR010916 TonB box, conserved site VI35_08735 464e73c0977227ad5bc6c2ef32111770 657 Pfam PF07715 TonB-dependent Receptor Plug Domain 49 159 5.4E-32 T 17-10-2018 IPR012910 TonB-dependent receptor, plug domain VI35_08735 464e73c0977227ad5bc6c2ef32111770 657 Pfam PF00593 TonB dependent receptor 254 656 6.5E-61 T 17-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel VI35_16600 1abcef6f8741f8478786a84eb5878df3 516 SUPERFAMILY SSF53187 146 370 4.39E-52 T 17-10-2018 VI35_16600 1abcef6f8741f8478786a84eb5878df3 516 Gene3D G3DSA:3.40.630.40 135 377 5.7E-72 T 17-10-2018 VI35_16600 1abcef6f8741f8478786a84eb5878df3 516 SMART SM00646 208 367 5.5E-62 T 17-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 VI35_16600 1abcef6f8741f8478786a84eb5878df3 516 SMART SM00257 471 514 3.2E-12 T 17-10-2018 IPR018392 LysM domain VI35_16600 1abcef6f8741f8478786a84eb5878df3 516 Pfam PF01476 LysM domain 472 514 8.2E-10 T 17-10-2018 IPR018392 LysM domain VI35_16600 1abcef6f8741f8478786a84eb5878df3 516 Gene3D G3DSA:3.10.350.10 458 516 8.2E-13 T 17-10-2018 IPR036779 LysM domain superfamily VI35_16600 1abcef6f8741f8478786a84eb5878df3 516 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 148 367 2.0E-48 T 17-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 VI35_16600 1abcef6f8741f8478786a84eb5878df3 516 Pfam PF11741 AMIN domain 24 124 2.4E-20 T 17-10-2018 IPR021731 AMIN domain VI35_16600 1abcef6f8741f8478786a84eb5878df3 516 SUPERFAMILY SSF54106 470 514 1.83E-8 T 17-10-2018 VI35_16600 1abcef6f8741f8478786a84eb5878df3 516 Gene3D G3DSA:2.60.40.3500 15 125 3.3E-25 T 17-10-2018 VI35_08670 ca9a5fc5ac65cde9f1c87d0b71eaefbe 183 Pfam PF07273 Protein of unknown function (DUF1439) 24 175 5.5E-48 T 17-10-2018 IPR010835 Protein of unknown function DUF1439 VI35_08670 ca9a5fc5ac65cde9f1c87d0b71eaefbe 183 Gene3D G3DSA:3.15.10.40 15 182 3.2E-56 T 17-10-2018 VI35_12205 1009f1830757f53501ad018260d6bdd9 461 SMART SM00928 352 397 8.7E-22 T 17-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12205 1009f1830757f53501ad018260d6bdd9 461 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 188 203 - T 17-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12205 1009f1830757f53501ad018260d6bdd9 461 Gene3D G3DSA:3.10.20.600 257 349 2.1E-21 T 17-10-2018 VI35_12205 1009f1830757f53501ad018260d6bdd9 461 SUPERFAMILY SSF142019 27 258 8.11E-85 T 17-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12205 1009f1830757f53501ad018260d6bdd9 461 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 68 240 3.1E-49 T 17-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12205 1009f1830757f53501ad018260d6bdd9 461 Gene3D G3DSA:3.40.50.11540 73 252 7.2E-78 T 17-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12205 1009f1830757f53501ad018260d6bdd9 461 SUPERFAMILY SSF140490 349 443 1.57E-29 T 17-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12205 1009f1830757f53501ad018260d6bdd9 461 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 355 437 3.1E-24 T 17-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12205 1009f1830757f53501ad018260d6bdd9 461 Pfam PF10531 SLBB domain 269 315 4.3E-7 T 17-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12205 1009f1830757f53501ad018260d6bdd9 461 SUPERFAMILY SSF142984 264 347 3.92E-18 T 17-10-2018 VI35_12205 1009f1830757f53501ad018260d6bdd9 461 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 365 376 - T 17-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12205 1009f1830757f53501ad018260d6bdd9 461 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 27 439 2.2E-194 T 17-10-2018 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12205 1009f1830757f53501ad018260d6bdd9 461 Gene3D G3DSA:1.20.1440.230 350 450 6.8E-26 T 17-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_15420 e190fe12fc9865eaf24de8b43863d86f 444 Pfam PF11734 TilS substrate C-terminal domain 363 433 1.5E-22 T 17-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 VI35_15420 e190fe12fc9865eaf24de8b43863d86f 444 Pfam PF01171 PP-loop family 22 199 1.2E-56 T 17-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 VI35_15420 e190fe12fc9865eaf24de8b43863d86f 444 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 22 203 1.9E-50 T 17-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 VI35_15420 e190fe12fc9865eaf24de8b43863d86f 444 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 371 410 1.2E-12 T 17-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 VI35_15420 e190fe12fc9865eaf24de8b43863d86f 444 SUPERFAMILY SSF52402 18 232 1.57E-57 T 17-10-2018 VI35_15420 e190fe12fc9865eaf24de8b43863d86f 444 Gene3D G3DSA:1.20.59.20 232 317 3.2E-25 T 17-10-2018 VI35_15420 e190fe12fc9865eaf24de8b43863d86f 444 Gene3D G3DSA:3.40.50.620 17 231 2.5E-65 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_15420 e190fe12fc9865eaf24de8b43863d86f 444 Pfam PF09179 TilS substrate binding domain 247 314 4.6E-21 T 17-10-2018 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 VI35_15420 e190fe12fc9865eaf24de8b43863d86f 444 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 6 308 22.672 T 17-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 VI35_15420 e190fe12fc9865eaf24de8b43863d86f 444 SUPERFAMILY SSF56037 324 434 1.02E-28 T 17-10-2018 VI35_15420 e190fe12fc9865eaf24de8b43863d86f 444 SUPERFAMILY SSF82829 233 318 6.15E-26 T 17-10-2018 VI35_15420 e190fe12fc9865eaf24de8b43863d86f 444 SMART SM00977 363 435 5.5E-26 T 17-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 VI35_17545 278126f106113878c57d2c2990e2431e 508 TIGRFAM TIGR04040 glycyl_YjjI: glycine radical enzyme, YjjI family 6 497 2.5E-230 T 17-10-2018 IPR016905 Glycyl radical enzyme, HI0521, predicted VI35_17545 278126f106113878c57d2c2990e2431e 508 Gene3D G3DSA:3.20.70.20 74 237 1.9E-7 T 17-10-2018 VI35_17545 278126f106113878c57d2c2990e2431e 508 PIRSF PIRSF028991 1 508 3.0E-243 T 17-10-2018 IPR016905 Glycyl radical enzyme, HI0521, predicted VI35_17545 278126f106113878c57d2c2990e2431e 508 Pfam PF11230 Protein of unknown function (DUF3029) 16 497 2.7E-215 T 17-10-2018 IPR016905 Glycyl radical enzyme, HI0521, predicted VI35_17545 278126f106113878c57d2c2990e2431e 508 SUPERFAMILY SSF51998 21 472 3.97E-83 T 17-10-2018 VI35_18010 3a39b6a514288a2715d91e545ffc6f8f 246 Pfam PF00005 ABC transporter 18 174 5.2E-32 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_18010 3a39b6a514288a2715d91e545ffc6f8f 246 SMART SM00382 27 222 5.1E-14 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_18010 3a39b6a514288a2715d91e545ffc6f8f 246 PIRSF PIRSF039085 1 246 3.7E-86 T 17-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 VI35_18010 3a39b6a514288a2715d91e545ffc6f8f 246 SUPERFAMILY SSF52540 5 240 4.11E-64 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_18010 3a39b6a514288a2715d91e545ffc6f8f 246 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_18010 3a39b6a514288a2715d91e545ffc6f8f 246 Gene3D G3DSA:3.40.50.300 2 246 5.4E-67 T 17-10-2018 VI35_11695 c2dbf34fc17cd11cab3de92de352a105 561 SUPERFAMILY SSF116726 294 377 2.22E-11 T 17-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VI35_11695 c2dbf34fc17cd11cab3de92de352a105 561 Pfam PF06826 Predicted Permease Membrane Region 17 184 9.7E-36 T 17-10-2018 IPR006512 YidE/YbjL duplication VI35_11695 c2dbf34fc17cd11cab3de92de352a105 561 Pfam PF06826 Predicted Permease Membrane Region 389 556 1.5E-37 T 17-10-2018 IPR006512 YidE/YbjL duplication VI35_11695 c2dbf34fc17cd11cab3de92de352a105 561 Gene3D G3DSA:3.30.70.1450 220 288 7.2E-10 T 17-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VI35_11695 c2dbf34fc17cd11cab3de92de352a105 561 Gene3D G3DSA:3.30.70.1450 301 375 3.9E-5 T 17-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VI35_11695 c2dbf34fc17cd11cab3de92de352a105 561 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 22 171 3.2E-28 T 17-10-2018 IPR006512 YidE/YbjL duplication VI35_11695 c2dbf34fc17cd11cab3de92de352a105 561 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 393 543 1.4E-34 T 17-10-2018 IPR006512 YidE/YbjL duplication VI35_11695 c2dbf34fc17cd11cab3de92de352a105 561 SUPERFAMILY SSF116726 230 285 3.01E-10 T 17-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VI35_11695 c2dbf34fc17cd11cab3de92de352a105 561 Hamap MF_01015 Putative transport protein YbjL [ybjL]. 1 560 58.588 T 17-10-2018 IPR023017 Transport protein YbjL, putative VI35_11695 c2dbf34fc17cd11cab3de92de352a105 561 Pfam PF02080 TrkA-C domain 232 281 2.2E-9 T 17-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 VI35_11695 c2dbf34fc17cd11cab3de92de352a105 561 Pfam PF02080 TrkA-C domain 309 375 4.7E-9 T 17-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 VI35_14890 e98b2fe399aedceac33542c893ee3e26 241 Gene3D G3DSA:3.10.129.10 90 240 1.4E-37 T 17-10-2018 VI35_14890 e98b2fe399aedceac33542c893ee3e26 241 Pfam PF01575 MaoC like domain 97 210 1.4E-23 T 17-10-2018 IPR002539 MaoC-like dehydratase domain VI35_14890 e98b2fe399aedceac33542c893ee3e26 241 SUPERFAMILY SSF54637 99 239 1.35E-29 T 17-10-2018 IPR029069 HotDog domain superfamily VI35_13860 0c7695e206c130fd799d916567bb6c89 323 SUPERFAMILY SSF55347 124 283 7.41E-23 T 17-10-2018 VI35_13860 0c7695e206c130fd799d916567bb6c89 323 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 130 205 4.7E-7 T 17-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 VI35_13860 0c7695e206c130fd799d916567bb6c89 323 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 3 118 9.0E-19 T 17-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 VI35_13860 0c7695e206c130fd799d916567bb6c89 323 Gene3D G3DSA:3.40.50.720 2 120 1.0E-21 T 17-10-2018 VI35_13860 0c7695e206c130fd799d916567bb6c89 323 SUPERFAMILY SSF51735 3 153 3.24E-33 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_13860 0c7695e206c130fd799d916567bb6c89 323 Gene3D G3DSA:3.30.360.10 121 320 2.0E-32 T 17-10-2018 VI35_06915 ca56763d0b1f39fe637c9d6b5de588db 577 Hamap MF_01543 Formate--tetrahydrofolate ligase [fhs]. 1 577 42.884 T 17-10-2018 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 VI35_06915 ca56763d0b1f39fe637c9d6b5de588db 577 Gene3D G3DSA:3.40.50.300 6 459 9.1E-185 T 17-10-2018 VI35_06915 ca56763d0b1f39fe637c9d6b5de588db 577 Gene3D G3DSA:3.10.410.10 464 553 2.0E-30 T 17-10-2018 VI35_06915 ca56763d0b1f39fe637c9d6b5de588db 577 Pfam PF01268 Formate--tetrahydrofolate ligase 3 576 1.1E-239 T 17-10-2018 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 VI35_06915 ca56763d0b1f39fe637c9d6b5de588db 577 SUPERFAMILY SSF52540 4 575 1.01E-217 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_06915 ca56763d0b1f39fe637c9d6b5de588db 577 ProSitePatterns PS00722 Formate--tetrahydrofolate ligase signature 2. 341 352 - T 17-10-2018 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 VI35_06915 ca56763d0b1f39fe637c9d6b5de588db 577 Gene3D G3DSA:3.30.1510.10 129 260 9.1E-185 T 17-10-2018 VI35_03515 50c57e8b86dc911eab47721b674fdfd1 474 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 204 3.8E-67 T 17-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VI35_03515 50c57e8b86dc911eab47721b674fdfd1 474 Pfam PF10414 Sirohaem synthase dimerisation region 148 204 1.2E-13 T 17-10-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VI35_03515 50c57e8b86dc911eab47721b674fdfd1 474 SUPERFAMILY SSF53790 212 454 7.33E-80 T 17-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 VI35_03515 50c57e8b86dc911eab47721b674fdfd1 474 SUPERFAMILY SSF51735 1 111 1.08E-22 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_03515 50c57e8b86dc911eab47721b674fdfd1 474 Gene3D G3DSA:3.30.950.10 330 468 4.6E-48 T 17-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 VI35_03515 50c57e8b86dc911eab47721b674fdfd1 474 PIRSF PIRSF036426 1 464 5.3E-196 T 17-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VI35_03515 50c57e8b86dc911eab47721b674fdfd1 474 Gene3D G3DSA:3.40.1010.10 213 329 2.2E-45 T 17-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 VI35_03515 50c57e8b86dc911eab47721b674fdfd1 474 Gene3D G3DSA:3.40.50.720 1 110 6.9E-30 T 17-10-2018 VI35_03515 50c57e8b86dc911eab47721b674fdfd1 474 SUPERFAMILY SSF75615 112 200 1.31E-23 T 17-10-2018 VI35_03515 50c57e8b86dc911eab47721b674fdfd1 474 Gene3D G3DSA:1.10.8.210 147 208 4.0E-12 T 17-10-2018 IPR037115 Sirohaem synthase, dimerisation domain superfamily GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VI35_03515 50c57e8b86dc911eab47721b674fdfd1 474 Gene3D G3DSA:3.30.160.110 111 146 9.5E-19 T 17-10-2018 VI35_03515 50c57e8b86dc911eab47721b674fdfd1 474 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 294 327 - T 17-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VI35_03515 50c57e8b86dc911eab47721b674fdfd1 474 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 219 233 - T 17-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VI35_03515 50c57e8b86dc911eab47721b674fdfd1 474 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 216 426 1.0E-49 T 17-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 VI35_03515 50c57e8b86dc911eab47721b674fdfd1 474 Pfam PF14824 Sirohaem biosynthesis protein central 119 143 5.1E-7 T 17-10-2018 IPR028281 Siroheme synthase, central domain KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VI35_03515 50c57e8b86dc911eab47721b674fdfd1 474 Pfam PF13241 Putative NAD(P)-binding 6 113 9.3E-26 T 17-10-2018 VI35_03515 50c57e8b86dc911eab47721b674fdfd1 474 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 214 447 2.0E-93 T 17-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VI35_03515 50c57e8b86dc911eab47721b674fdfd1 474 Hamap MF_01646 Siroheme synthase [cysG]. 1 456 51.998 T 17-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VI35_03390 58a8ba4f20e678f0ba9ff0259fe1bef9 356 Gene3D G3DSA:2.70.70.10 218 354 8.2E-35 T 17-10-2018 IPR011055 Duplicated hybrid motif VI35_03390 58a8ba4f20e678f0ba9ff0259fe1bef9 356 Gene3D G3DSA:3.10.350.10 56 101 1.4E-14 T 17-10-2018 IPR036779 LysM domain superfamily VI35_03390 58a8ba4f20e678f0ba9ff0259fe1bef9 356 SUPERFAMILY SSF54106 58 100 6.28E-10 T 17-10-2018 VI35_03390 58a8ba4f20e678f0ba9ff0259fe1bef9 356 Pfam PF01551 Peptidase family M23 255 349 3.0E-29 T 17-10-2018 IPR016047 Peptidase M23 VI35_03390 58a8ba4f20e678f0ba9ff0259fe1bef9 356 SMART SM00257 57 101 4.6E-12 T 17-10-2018 IPR018392 LysM domain VI35_03390 58a8ba4f20e678f0ba9ff0259fe1bef9 356 SMART SM00257 126 170 1.8E-11 T 17-10-2018 IPR018392 LysM domain VI35_03390 58a8ba4f20e678f0ba9ff0259fe1bef9 356 Pfam PF01476 LysM domain 127 169 2.4E-12 T 17-10-2018 IPR018392 LysM domain VI35_03390 58a8ba4f20e678f0ba9ff0259fe1bef9 356 Pfam PF01476 LysM domain 58 100 2.8E-13 T 17-10-2018 IPR018392 LysM domain VI35_03390 58a8ba4f20e678f0ba9ff0259fe1bef9 356 SUPERFAMILY SSF51261 129 353 1.26E-46 T 17-10-2018 IPR011055 Duplicated hybrid motif VI35_03390 58a8ba4f20e678f0ba9ff0259fe1bef9 356 Gene3D G3DSA:3.10.350.10 126 169 1.1E-11 T 17-10-2018 IPR036779 LysM domain superfamily VI35_16670 37b6ff91ad9cbb6bc89c9aa8a1f11718 458 Pfam PF13286 Phosphohydrolase-associated domain 418 453 2.6E-5 T 17-10-2018 IPR026875 Phosphohydrolase-associated domain VI35_16670 37b6ff91ad9cbb6bc89c9aa8a1f11718 458 SUPERFAMILY SSF109604 24 453 9.71E-50 T 17-10-2018 VI35_16670 37b6ff91ad9cbb6bc89c9aa8a1f11718 458 SMART SM00471 53 251 7.4E-9 T 17-10-2018 IPR003607 HD/PDEase domain VI35_16670 37b6ff91ad9cbb6bc89c9aa8a1f11718 458 Gene3D G3DSA:1.10.3550.10 105 448 3.8E-72 T 17-10-2018 IPR027432 Deoxyguanosinetriphosphate triphosphohydrolase, C-terminal VI35_16670 37b6ff91ad9cbb6bc89c9aa8a1f11718 458 Gene3D G3DSA:1.10.3410.10 235 345 3.8E-72 T 17-10-2018 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain superfamily KEGG: 00230+3.1.5.1 VI35_16670 37b6ff91ad9cbb6bc89c9aa8a1f11718 458 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 24 455 1.6E-90 T 17-10-2018 IPR006261 dNTP triphosphohydrolase GO:0016793 VI35_16670 37b6ff91ad9cbb6bc89c9aa8a1f11718 458 Pfam PF01966 HD domain 57 115 3.8E-9 T 17-10-2018 IPR006674 HD domain VI35_16670 37b6ff91ad9cbb6bc89c9aa8a1f11718 458 Gene3D G3DSA:1.10.3210.10 24 234 3.8E-72 T 17-10-2018 VI35_02895 a16159aa913d376436fc804a8f275bac 421 Pfam PF00579 tRNA synthetases class I (W and Y) 32 327 3.0E-81 T 17-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_02895 a16159aa913d376436fc804a8f275bac 421 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 41 51 - T 17-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_02895 a16159aa913d376436fc804a8f275bac 421 Gene3D G3DSA:3.40.50.620 1 226 7.0E-85 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_02895 a16159aa913d376436fc804a8f275bac 421 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 4 420 43.378 T 17-10-2018 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 VI35_02895 a16159aa913d376436fc804a8f275bac 421 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 187 209 8.9E-31 T 17-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 VI35_02895 a16159aa913d376436fc804a8f275bac 421 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 45 67 8.9E-31 T 17-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 VI35_02895 a16159aa913d376436fc804a8f275bac 421 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 166 181 8.9E-31 T 17-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 VI35_02895 a16159aa913d376436fc804a8f275bac 421 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 220 232 8.9E-31 T 17-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 VI35_02895 a16159aa913d376436fc804a8f275bac 421 SUPERFAMILY SSF52374 5 327 3.13E-96 T 17-10-2018 VI35_02895 a16159aa913d376436fc804a8f275bac 421 Gene3D G3DSA:1.10.240.10 227 329 8.3E-35 T 17-10-2018 VI35_02895 a16159aa913d376436fc804a8f275bac 421 SUPERFAMILY SSF55174 326 419 2.09E-16 T 17-10-2018 VI35_02895 a16159aa913d376436fc804a8f275bac 421 Gene3D G3DSA:3.10.290.10 330 421 3.9E-24 T 17-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 VI35_02895 a16159aa913d376436fc804a8f275bac 421 Pfam PF01479 S4 domain 358 392 1.9E-5 T 17-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_02895 a16159aa913d376436fc804a8f275bac 421 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 5 418 2.1E-118 T 17-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 VI35_06265 ec72f0c2dfb11bc89bc10eff470b236d 540 SMART SM00283 278 539 7.9E-66 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_06265 ec72f0c2dfb11bc89bc10eff470b236d 540 SUPERFAMILY SSF58104 233 540 2.49E-70 T 17-10-2018 VI35_06265 ec72f0c2dfb11bc89bc10eff470b236d 540 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 352 506 2.0E-37 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_06265 ec72f0c2dfb11bc89bc10eff470b236d 540 SMART SM00304 211 263 8.6E-12 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_06265 ec72f0c2dfb11bc89bc10eff470b236d 540 Pfam PF00672 HAMP domain 212 258 2.2E-7 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_06265 ec72f0c2dfb11bc89bc10eff470b236d 540 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 405 434 5.2E-22 T 17-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VI35_06265 ec72f0c2dfb11bc89bc10eff470b236d 540 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 376 403 5.2E-22 T 17-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VI35_06265 ec72f0c2dfb11bc89bc10eff470b236d 540 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 6 31 5.2E-22 T 17-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VI35_06265 ec72f0c2dfb11bc89bc10eff470b236d 540 Gene3D G3DSA:1.10.287.950 211 540 8.4E-71 T 17-10-2018 VI35_05110 2abcc58f646c78dae4fc49bee95fbbca 293 SUPERFAMILY SSF54631 62 201 2.02E-34 T 17-10-2018 VI35_05110 2abcc58f646c78dae4fc49bee95fbbca 293 SMART SM01091 206 284 1.5E-28 T 17-10-2018 IPR005170 Transporter-associated domain VI35_05110 2abcc58f646c78dae4fc49bee95fbbca 293 Gene3D G3DSA:3.10.580.10 47 195 8.8E-54 T 17-10-2018 VI35_05110 2abcc58f646c78dae4fc49bee95fbbca 293 Pfam PF03471 Transporter associated domain 207 282 1.2E-20 T 17-10-2018 IPR005170 Transporter-associated domain VI35_05110 2abcc58f646c78dae4fc49bee95fbbca 293 SUPERFAMILY SSF56176 203 288 1.17E-22 T 17-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 VI35_05110 2abcc58f646c78dae4fc49bee95fbbca 293 Pfam PF00571 CBS domain 65 119 7.7E-7 T 17-10-2018 IPR000644 CBS domain VI35_05110 2abcc58f646c78dae4fc49bee95fbbca 293 Pfam PF00571 CBS domain 139 188 3.4E-6 T 17-10-2018 IPR000644 CBS domain VI35_05110 2abcc58f646c78dae4fc49bee95fbbca 293 SMART SM00116 140 188 0.028 T 17-10-2018 IPR000644 CBS domain VI35_05110 2abcc58f646c78dae4fc49bee95fbbca 293 SMART SM00116 74 123 3.5 T 17-10-2018 IPR000644 CBS domain VI35_05110 2abcc58f646c78dae4fc49bee95fbbca 293 Gene3D G3DSA:3.30.465.10 196 282 2.4E-29 T 17-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 VI35_07905 427856157a463d948618feea505d9c24 163 SUPERFAMILY SSF53955 6 161 3.12E-32 T 17-10-2018 IPR023346 Lysozyme-like domain superfamily VI35_07905 427856157a463d948618feea505d9c24 163 Pfam PF00959 Phage lysozyme 42 137 1.3E-8 T 17-10-2018 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 VI35_07905 427856157a463d948618feea505d9c24 163 Gene3D G3DSA:1.10.530.40 2 163 9.9E-35 T 17-10-2018 VI35_16325 cc4bd0ce05fc1b1a2d97e6d2942257a4 383 SMART SM00267 208 382 7.0E-61 T 17-10-2018 IPR000160 GGDEF domain VI35_16325 cc4bd0ce05fc1b1a2d97e6d2942257a4 383 Pfam PF17178 Membrane-associated sensor 28 218 1.6E-35 T 17-10-2018 IPR033444 Membrane-associated sensor MASE5 VI35_16325 cc4bd0ce05fc1b1a2d97e6d2942257a4 383 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 216 380 1.6E-46 T 17-10-2018 IPR000160 GGDEF domain VI35_16325 cc4bd0ce05fc1b1a2d97e6d2942257a4 383 Gene3D G3DSA:3.30.70.270 210 382 2.1E-55 T 17-10-2018 VI35_16325 cc4bd0ce05fc1b1a2d97e6d2942257a4 383 Pfam PF00990 Diguanylate cyclase, GGDEF domain 219 377 4.1E-49 T 17-10-2018 IPR000160 GGDEF domain VI35_16325 cc4bd0ce05fc1b1a2d97e6d2942257a4 383 SUPERFAMILY SSF55073 224 381 2.82E-46 T 17-10-2018 IPR029787 Nucleotide cyclase VI35_13690 5c23f087cc9168b3e237c8d5dbd8ca0c 545 Gene3D G3DSA:3.10.105.10 301 514 6.2E-157 T 17-10-2018 VI35_13690 5c23f087cc9168b3e237c8d5dbd8ca0c 545 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 85 462 6.9E-76 T 17-10-2018 IPR000914 Solute-binding protein family 5 domain VI35_13690 5c23f087cc9168b3e237c8d5dbd8ca0c 545 Gene3D G3DSA:3.40.190.10 49 525 6.2E-157 T 17-10-2018 VI35_13690 5c23f087cc9168b3e237c8d5dbd8ca0c 545 Gene3D G3DSA:3.90.76.10 75 199 6.2E-157 T 17-10-2018 VI35_13690 5c23f087cc9168b3e237c8d5dbd8ca0c 545 SUPERFAMILY SSF53850 39 528 3.8E-130 T 17-10-2018 VI35_13690 5c23f087cc9168b3e237c8d5dbd8ca0c 545 PIRSF PIRSF002741 15 545 9.8E-98 T 17-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 VI35_00065 97ed2011fc7ca6ce46fbd4b02a4050e5 227 SMART SM00448 2 112 1.3E-35 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_00065 97ed2011fc7ca6ce46fbd4b02a4050e5 227 Gene3D G3DSA:1.10.10.10 128 226 2.5E-29 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_00065 97ed2011fc7ca6ce46fbd4b02a4050e5 227 SUPERFAMILY SSF52172 1 120 3.42E-35 T 17-10-2018 IPR011006 CheY-like superfamily VI35_00065 97ed2011fc7ca6ce46fbd4b02a4050e5 227 SMART SM00862 148 224 6.3E-19 T 17-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VI35_00065 97ed2011fc7ca6ce46fbd4b02a4050e5 227 SUPERFAMILY SSF46894 132 225 7.65E-24 T 17-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VI35_00065 97ed2011fc7ca6ce46fbd4b02a4050e5 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 224 1.6E-21 T 17-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VI35_00065 97ed2011fc7ca6ce46fbd4b02a4050e5 227 Pfam PF00072 Response regulator receiver domain 4 113 2.3E-24 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_00065 97ed2011fc7ca6ce46fbd4b02a4050e5 227 Gene3D G3DSA:3.40.50.2300 1 126 3.9E-31 T 17-10-2018 VI35_15505 e6b0e8a4611d488ca9d91bda5978a6e3 807 Gene3D G3DSA:3.10.20.310 267 348 3.3E-12 T 17-10-2018 VI35_15505 e6b0e8a4611d488ca9d91bda5978a6e3 807 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 26 807 4.9E-274 T 17-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 VI35_15505 e6b0e8a4611d488ca9d91bda5978a6e3 807 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 8 807 25.496 T 17-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 VI35_15505 e6b0e8a4611d488ca9d91bda5978a6e3 807 Gene3D G3DSA:3.10.20.310 350 427 3.9E-25 T 17-10-2018 VI35_15505 e6b0e8a4611d488ca9d91bda5978a6e3 807 Pfam PF01103 Surface antigen 450 807 1.2E-86 T 17-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 VI35_15505 e6b0e8a4611d488ca9d91bda5978a6e3 807 Gene3D G3DSA:3.10.20.310 22 93 4.8E-18 T 17-10-2018 VI35_15505 e6b0e8a4611d488ca9d91bda5978a6e3 807 Pfam PF07244 Surface antigen variable number repeat 178 265 5.9E-15 T 17-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 VI35_15505 e6b0e8a4611d488ca9d91bda5978a6e3 807 Pfam PF07244 Surface antigen variable number repeat 268 346 1.3E-7 T 17-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 VI35_15505 e6b0e8a4611d488ca9d91bda5978a6e3 807 Pfam PF07244 Surface antigen variable number repeat 94 174 7.8E-12 T 17-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 VI35_15505 e6b0e8a4611d488ca9d91bda5978a6e3 807 Pfam PF07244 Surface antigen variable number repeat 349 423 3.0E-15 T 17-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 VI35_15505 e6b0e8a4611d488ca9d91bda5978a6e3 807 Gene3D G3DSA:3.10.20.310 177 266 1.4E-22 T 17-10-2018 VI35_15505 e6b0e8a4611d488ca9d91bda5978a6e3 807 Gene3D G3DSA:3.10.20.310 94 174 2.0E-16 T 17-10-2018 VI35_15505 e6b0e8a4611d488ca9d91bda5978a6e3 807 PIRSF PIRSF006076 1 807 2.2E-245 T 17-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 VI35_15505 e6b0e8a4611d488ca9d91bda5978a6e3 807 Gene3D G3DSA:2.40.160.50 428 807 5.6E-121 T 17-10-2018 VI35_14255 b644e1084749b8d4e8b3a812d418e082 1052 Gene3D G3DSA:3.30.2090.10 194 285 1.8E-231 T 17-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VI35_14255 b644e1084749b8d4e8b3a812d418e082 1052 Gene3D G3DSA:3.30.70.1430 54 834 1.8E-231 T 17-10-2018 VI35_14255 b644e1084749b8d4e8b3a812d418e082 1052 SUPERFAMILY SSF82866 308 509 1.83E-38 T 17-10-2018 VI35_14255 b644e1084749b8d4e8b3a812d418e082 1052 Gene3D G3DSA:1.20.1640.10 30 522 1.8E-231 T 17-10-2018 VI35_14255 b644e1084749b8d4e8b3a812d418e082 1052 SUPERFAMILY SSF82714 199 279 5.1E-11 T 17-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VI35_14255 b644e1084749b8d4e8b3a812d418e082 1052 Gene3D G3DSA:3.30.70.1320 148 343 1.8E-231 T 17-10-2018 VI35_14255 b644e1084749b8d4e8b3a812d418e082 1052 PRINTS PR00702 Acriflavin resistance protein family signature 24 48 1.5E-25 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_14255 b644e1084749b8d4e8b3a812d418e082 1052 PRINTS PR00702 Acriflavin resistance protein family signature 52 70 1.5E-25 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_14255 b644e1084749b8d4e8b3a812d418e082 1052 PRINTS PR00702 Acriflavin resistance protein family signature 482 505 1.5E-25 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_14255 b644e1084749b8d4e8b3a812d418e082 1052 PRINTS PR00702 Acriflavin resistance protein family signature 403 427 1.5E-25 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_14255 b644e1084749b8d4e8b3a812d418e082 1052 PRINTS PR00702 Acriflavin resistance protein family signature 375 396 1.5E-25 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_14255 b644e1084749b8d4e8b3a812d418e082 1052 PRINTS PR00702 Acriflavin resistance protein family signature 457 480 1.5E-25 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_14255 b644e1084749b8d4e8b3a812d418e082 1052 SUPERFAMILY SSF82866 823 1046 2.62E-41 T 17-10-2018 VI35_14255 b644e1084749b8d4e8b3a812d418e082 1052 Gene3D G3DSA:3.30.70.1440 688 893 1.8E-231 T 17-10-2018 VI35_14255 b644e1084749b8d4e8b3a812d418e082 1052 SUPERFAMILY SSF82693 150 341 5.23E-15 T 17-10-2018 VI35_14255 b644e1084749b8d4e8b3a812d418e082 1052 Gene3D G3DSA:3.30.70.1430 577 687 1.8E-231 T 17-10-2018 VI35_14255 b644e1084749b8d4e8b3a812d418e082 1052 SUPERFAMILY SSF82693 573 687 8.89E-14 T 17-10-2018 VI35_14255 b644e1084749b8d4e8b3a812d418e082 1052 Gene3D G3DSA:3.30.2090.10 736 826 1.8E-231 T 17-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VI35_14255 b644e1084749b8d4e8b3a812d418e082 1052 SUPERFAMILY SSF82714 735 821 7.06E-9 T 17-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VI35_14255 b644e1084749b8d4e8b3a812d418e082 1052 Gene3D G3DSA:1.20.1640.10 523 1043 1.8E-231 T 17-10-2018 VI35_14255 b644e1084749b8d4e8b3a812d418e082 1052 SUPERFAMILY SSF82693 54 148 1.74E-19 T 17-10-2018 VI35_14255 b644e1084749b8d4e8b3a812d418e082 1052 Pfam PF00873 AcrB/AcrD/AcrF family 27 1044 5.4E-156 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_12155 95e3664a63bb86a821067ced47f05aaa 196 SUPERFAMILY SSF140478 31 182 6.8E-54 T 17-10-2018 IPR023353 LemA-like domain superfamily VI35_12155 95e3664a63bb86a821067ced47f05aaa 196 Pfam PF04011 LemA family 16 195 5.0E-66 T 17-10-2018 IPR007156 LemA VI35_12155 95e3664a63bb86a821067ced47f05aaa 196 Gene3D G3DSA:1.20.1440.20 24 195 4.2E-65 T 17-10-2018 IPR023353 LemA-like domain superfamily VI35_14260 8cca259f6f9fdadc1b22edeb30ae86f5 339 SUPERFAMILY SSF111369 39 269 3.27E-26 T 17-10-2018 VI35_14260 8cca259f6f9fdadc1b22edeb30ae86f5 339 Gene3D G3DSA:2.40.420.20 30 324 2.4E-58 T 17-10-2018 VI35_14260 8cca259f6f9fdadc1b22edeb30ae86f5 339 Gene3D G3DSA:2.40.30.170 38 268 2.4E-58 T 17-10-2018 VI35_14260 8cca259f6f9fdadc1b22edeb30ae86f5 339 Gene3D G3DSA:1.10.287.470 88 155 2.4E-58 T 17-10-2018 VI35_14260 8cca259f6f9fdadc1b22edeb30ae86f5 339 Gene3D G3DSA:2.40.50.100 50 190 2.4E-58 T 17-10-2018 VI35_14260 8cca259f6f9fdadc1b22edeb30ae86f5 339 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 50 261 3.7E-15 T 17-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VI35_14260 8cca259f6f9fdadc1b22edeb30ae86f5 339 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 33 324 8.2E-57 T 17-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VI35_07685 34f330379867cf21720ca53e73fad417 408 SUPERFAMILY SSF50621 273 406 1.43E-40 T 17-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 VI35_07685 34f330379867cf21720ca53e73fad417 408 Pfam PF00842 Alanine racemase, C-terminal domain 279 390 5.4E-32 T 17-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VI35_07685 34f330379867cf21720ca53e73fad417 408 Gene3D G3DSA:2.40.37.10 42 403 2.4E-151 T 17-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 VI35_07685 34f330379867cf21720ca53e73fad417 408 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 71 81 - T 17-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VI35_07685 34f330379867cf21720ca53e73fad417 408 Hamap MF_01201 Alanine racemase. 39 407 25.434 T 17-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VI35_07685 34f330379867cf21720ca53e73fad417 408 SMART SM01005 279 407 2.8E-48 T 17-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VI35_07685 34f330379867cf21720ca53e73fad417 408 SUPERFAMILY SSF51419 46 269 5.01E-47 T 17-10-2018 IPR029066 PLP-binding barrel VI35_07685 34f330379867cf21720ca53e73fad417 408 Pfam PF01168 Alanine racemase, N-terminal domain 46 269 3.3E-48 T 17-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VI35_07685 34f330379867cf21720ca53e73fad417 408 TIGRFAM TIGR00492 alr: alanine racemase 42 383 2.4E-67 T 17-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VI35_07685 34f330379867cf21720ca53e73fad417 408 Gene3D G3DSA:3.20.20.10 48 266 2.4E-151 T 17-10-2018 IPR029066 PLP-binding barrel VI35_07685 34f330379867cf21720ca53e73fad417 408 PRINTS PR00992 Alanine racemase signature 66 82 3.4E-34 T 17-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VI35_07685 34f330379867cf21720ca53e73fad417 408 PRINTS PR00992 Alanine racemase signature 102 120 3.4E-34 T 17-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VI35_07685 34f330379867cf21720ca53e73fad417 408 PRINTS PR00992 Alanine racemase signature 312 327 3.4E-34 T 17-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VI35_07685 34f330379867cf21720ca53e73fad417 408 PRINTS PR00992 Alanine racemase signature 200 211 3.4E-34 T 17-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VI35_07685 34f330379867cf21720ca53e73fad417 408 PRINTS PR00992 Alanine racemase signature 333 350 3.4E-34 T 17-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VI35_07685 34f330379867cf21720ca53e73fad417 408 PRINTS PR00992 Alanine racemase signature 243 270 3.4E-34 T 17-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VI35_07685 34f330379867cf21720ca53e73fad417 408 PRINTS PR00992 Alanine racemase signature 295 310 3.4E-34 T 17-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VI35_14210 dcfdde671cacbea24c4a7df5ec1d0f33 320 Gene3D G3DSA:1.10.287.70 209 320 4.7E-14 T 17-10-2018 VI35_14210 dcfdde671cacbea24c4a7df5ec1d0f33 320 SUPERFAMILY SSF141571 49 135 2.62E-13 T 17-10-2018 VI35_14210 dcfdde671cacbea24c4a7df5ec1d0f33 320 SUPERFAMILY SSF81324 223 320 5.1E-14 T 17-10-2018 VI35_14210 dcfdde671cacbea24c4a7df5ec1d0f33 320 Pfam PF07885 Ion channel 230 319 1.1E-11 T 17-10-2018 IPR013099 Potassium channel domain VI35_14210 dcfdde671cacbea24c4a7df5ec1d0f33 320 Gene3D G3DSA:2.160.20.80 21 145 1.9E-12 T 17-10-2018 VI35_14210 dcfdde671cacbea24c4a7df5ec1d0f33 320 Pfam PF13599 Pentapeptide repeats (9 copies) 78 137 1.3E-6 T 17-10-2018 IPR001646 Pentapeptide repeat VI35_03780 5827b87de9a76b427be39d31c22f4bde 452 Pfam PF02321 Outer membrane efflux protein 13 229 3.4E-23 T 17-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VI35_03780 5827b87de9a76b427be39d31c22f4bde 452 Pfam PF02321 Outer membrane efflux protein 252 434 2.1E-24 T 17-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VI35_03780 5827b87de9a76b427be39d31c22f4bde 452 Gene3D G3DSA:1.20.1600.10 4 446 2.2E-67 T 17-10-2018 VI35_03780 5827b87de9a76b427be39d31c22f4bde 452 SUPERFAMILY SSF56954 11 441 1.57E-68 T 17-10-2018 VI35_04805 c89f38539eac78ae9f4bfeaee34e8daa 296 Pfam PF00348 Polyprenyl synthetase 31 266 1.0E-57 T 17-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 VI35_04805 c89f38539eac78ae9f4bfeaee34e8daa 296 Gene3D G3DSA:1.10.600.10 2 296 4.0E-100 T 17-10-2018 IPR008949 Isoprenoid synthase domain superfamily VI35_04805 c89f38539eac78ae9f4bfeaee34e8daa 296 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 215 227 - T 17-10-2018 IPR033749 Polyprenyl synthetase, conserved site VI35_04805 c89f38539eac78ae9f4bfeaee34e8daa 296 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 81 97 - T 17-10-2018 IPR033749 Polyprenyl synthetase, conserved site VI35_04805 c89f38539eac78ae9f4bfeaee34e8daa 296 SUPERFAMILY SSF48576 4 289 3.7E-87 T 17-10-2018 IPR008949 Isoprenoid synthase domain superfamily VI35_12445 dfd5d46b7372e09b2b3f02a0f3458066 161 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 5 120 3.6E-45 T 17-10-2018 IPR028973 PhnB-like VI35_12445 dfd5d46b7372e09b2b3f02a0f3458066 161 SUPERFAMILY SSF54593 6 158 6.14E-49 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_12445 dfd5d46b7372e09b2b3f02a0f3458066 161 PIRSF PIRSF021700 1 160 5.1E-67 T 17-10-2018 IPR009725 Predicted 3-demethylubiquinone-9 3-methyltransferase VI35_12445 dfd5d46b7372e09b2b3f02a0f3458066 161 Gene3D G3DSA:3.10.180.70 2 161 2.2E-62 T 17-10-2018 VI35_00805 dede5a8dd7ee56a00aac3b82734464be 151 Pfam PF03061 Thioesterase superfamily 52 140 1.2E-16 T 17-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 VI35_00805 dede5a8dd7ee56a00aac3b82734464be 151 SUPERFAMILY SSF54637 9 150 3.74E-27 T 17-10-2018 IPR029069 HotDog domain superfamily VI35_00805 dede5a8dd7ee56a00aac3b82734464be 151 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 21 149 3.5E-18 T 17-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 VI35_00805 dede5a8dd7ee56a00aac3b82734464be 151 Gene3D G3DSA:3.10.129.10 1 151 1.5E-56 T 17-10-2018 VI35_02220 302154069092f3d8c08af7687d3faf8e 588 Hamap MF_02080 Peptidoglycan D,D-transpeptidase FtsI [ftsI]. 22 570 43.565 T 17-10-2018 IPR037532 Peptidoglycan D,D-transpeptidase FtsI GO:0005887|GO:0008658|GO:0008955|GO:0009252|GO:0051301 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VI35_02220 302154069092f3d8c08af7687d3faf8e 588 Pfam PF00905 Penicillin binding protein transpeptidase domain 263 554 9.4E-78 T 17-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 VI35_02220 302154069092f3d8c08af7687d3faf8e 588 Gene3D G3DSA:3.30.450.330 240 555 5.6E-101 T 17-10-2018 VI35_02220 302154069092f3d8c08af7687d3faf8e 588 Gene3D G3DSA:3.90.1310.30 62 238 3.4E-42 T 17-10-2018 VI35_02220 302154069092f3d8c08af7687d3faf8e 588 SUPERFAMILY SSF56519 66 237 9.42E-42 T 17-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 VI35_02220 302154069092f3d8c08af7687d3faf8e 588 SUPERFAMILY SSF56601 238 567 1.43E-90 T 17-10-2018 IPR012338 Beta-lactamase/transpeptidase-like VI35_02220 302154069092f3d8c08af7687d3faf8e 588 Pfam PF03717 Penicillin-binding Protein dimerisation domain 70 223 1.1E-14 T 17-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 VI35_02220 302154069092f3d8c08af7687d3faf8e 588 Gene3D G3DSA:3.40.710.10 299 479 5.6E-101 T 17-10-2018 VI35_05615 4163a03c894523bde7131aa36a4ebead 226 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 3 211 2.5E-84 T 17-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 VI35_05615 4163a03c894523bde7131aa36a4ebead 226 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 1 218 39.618 T 17-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 VI35_05615 4163a03c894523bde7131aa36a4ebead 226 Gene3D G3DSA:3.40.470.10 1 224 3.1E-102 T 17-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 VI35_05615 4163a03c894523bde7131aa36a4ebead 226 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 54 63 - T 17-10-2018 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 VI35_05615 4163a03c894523bde7131aa36a4ebead 226 SMART SM00986 46 207 3.8E-41 T 17-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 VI35_05615 4163a03c894523bde7131aa36a4ebead 226 SMART SM00987 46 207 3.8E-41 T 17-10-2018 VI35_05615 4163a03c894523bde7131aa36a4ebead 226 SUPERFAMILY SSF52141 3 217 9.59E-94 T 17-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 VI35_05615 4163a03c894523bde7131aa36a4ebead 226 Pfam PF03167 Uracil DNA glycosylase superfamily 51 206 3.4E-25 T 17-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 VI35_17120 78726dfc4b5b891217c777bb16124c77 457 SUPERFAMILY SSF53383 88 448 1.35E-68 T 17-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VI35_17120 78726dfc4b5b891217c777bb16124c77 457 Gene3D G3DSA:3.40.640.10 131 346 9.1E-64 T 17-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VI35_17120 78726dfc4b5b891217c777bb16124c77 457 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 78 9.6E-14 T 17-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VI35_17120 78726dfc4b5b891217c777bb16124c77 457 Gene3D G3DSA:1.10.10.10 11 79 2.6E-17 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_17120 78726dfc4b5b891217c777bb16124c77 457 SMART SM00345 19 78 6.4E-13 T 17-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VI35_17120 78726dfc4b5b891217c777bb16124c77 457 SUPERFAMILY SSF46785 13 88 3.32E-16 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_17120 78726dfc4b5b891217c777bb16124c77 457 Pfam PF00155 Aminotransferase class I and II 123 427 2.6E-11 T 17-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 VI35_17120 78726dfc4b5b891217c777bb16124c77 457 Gene3D G3DSA:3.90.1150.10 116 444 9.1E-64 T 17-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VI35_16615 4c2bb3bc6beb14e693bb0fb10e3147e8 384 Pfam PF13484 4Fe-4S double cluster binding domain 202 265 5.1E-19 T 17-10-2018 VI35_16615 4c2bb3bc6beb14e693bb0fb10e3147e8 384 Pfam PF08331 Domain of unknown function (DUF1730) 61 148 9.3E-23 T 17-10-2018 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 VI35_16615 4c2bb3bc6beb14e693bb0fb10e3147e8 384 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 13 357 4.9E-146 T 17-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 VI35_16615 4c2bb3bc6beb14e693bb0fb10e3147e8 384 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 6 324 50.563 T 17-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 VI35_16615 4c2bb3bc6beb14e693bb0fb10e3147e8 384 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 202 213 - T 17-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VI35_16615 4c2bb3bc6beb14e693bb0fb10e3147e8 384 SUPERFAMILY SSF54862 196 295 7.95E-16 T 17-10-2018 VI35_13445 bd4a12c3eafabb071af2d9fe01fc9796 283 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 54 274 4.7E-67 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_13445 bd4a12c3eafabb071af2d9fe01fc9796 283 SMART SM00079 53 275 6.1E-5 T 17-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 VI35_13445 bd4a12c3eafabb071af2d9fe01fc9796 283 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 76 89 - T 17-10-2018 IPR018313 Solute-binding protein family 3, conserved site VI35_13445 bd4a12c3eafabb071af2d9fe01fc9796 283 Gene3D G3DSA:3.40.190.10 54 273 2.5E-77 T 17-10-2018 VI35_13445 bd4a12c3eafabb071af2d9fe01fc9796 283 Gene3D G3DSA:3.40.190.10 138 235 2.5E-77 T 17-10-2018 VI35_13445 bd4a12c3eafabb071af2d9fe01fc9796 283 SUPERFAMILY SSF53850 22 274 1.4E-75 T 17-10-2018 VI35_13445 bd4a12c3eafabb071af2d9fe01fc9796 283 SMART SM00062 53 276 1.8E-67 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_06905 a623dbb987000325a67deb3433db1342 218 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 38 216 5.0E-81 T 17-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 VI35_06905 a623dbb987000325a67deb3433db1342 218 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 144 154 - T 17-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 VI35_06905 a623dbb987000325a67deb3433db1342 218 Gene3D G3DSA:3.30.1130.10 85 217 9.1E-53 T 17-10-2018 VI35_06905 a623dbb987000325a67deb3433db1342 218 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 34 217 34.881 T 17-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 VI35_06905 a623dbb987000325a67deb3433db1342 218 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 96 112 - T 17-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 VI35_06905 a623dbb987000325a67deb3433db1342 218 Pfam PF01227 GTP cyclohydrolase I 38 214 2.9E-64 T 17-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 VI35_06905 a623dbb987000325a67deb3433db1342 218 SUPERFAMILY SSF55620 23 215 4.0E-75 T 17-10-2018 VI35_06905 a623dbb987000325a67deb3433db1342 218 Gene3D G3DSA:1.10.286.10 1 84 3.5E-35 T 17-10-2018 VI35_00325 b3969312d040e3213357853b287cd69e 169 Pfam PF00731 AIR carboxylase 7 156 2.4E-59 T 17-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 VI35_00325 b3969312d040e3213357853b287cd69e 169 Gene3D G3DSA:3.40.50.7700 1 168 3.2E-68 T 17-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 VI35_00325 b3969312d040e3213357853b287cd69e 169 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 7 160 29.832 T 17-10-2018 IPR033747 Class I PurE VI35_00325 b3969312d040e3213357853b287cd69e 169 SMART SM01001 5 160 2.6E-93 T 17-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 VI35_00325 b3969312d040e3213357853b287cd69e 169 SUPERFAMILY SSF52255 4 160 6.15E-61 T 17-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 VI35_00325 b3969312d040e3213357853b287cd69e 169 PIRSF PIRSF001338 2 167 2.9E-60 T 17-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 VI35_00325 b3969312d040e3213357853b287cd69e 169 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 7 161 4.1E-58 T 17-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 VI35_18490 9c829e370f001365d37590092e285445 856 Gene3D G3DSA:3.40.50.300 577 822 4.3E-100 T 17-10-2018 VI35_18490 9c829e370f001365d37590092e285445 856 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 15 854 0.0 T 17-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 VI35_18490 9c829e370f001365d37590092e285445 856 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 695 711 - T 17-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 VI35_18490 9c829e370f001365d37590092e285445 856 Gene3D G3DSA:3.30.420.110 135 269 7.1E-37 T 17-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 VI35_18490 9c829e370f001365d37590092e285445 856 Pfam PF05192 MutS domain III 277 566 4.1E-39 T 17-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 VI35_18490 9c829e370f001365d37590092e285445 856 SUPERFAMILY SSF55271 8 123 3.92E-41 T 17-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 VI35_18490 9c829e370f001365d37590092e285445 856 Pfam PF01624 MutS domain I 16 127 8.8E-40 T 17-10-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 VI35_18490 9c829e370f001365d37590092e285445 856 Pfam PF00488 MutS domain V 617 804 7.2E-87 T 17-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 VI35_18490 9c829e370f001365d37590092e285445 856 SMART SM00533 291 598 1.4E-100 T 17-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 VI35_18490 9c829e370f001365d37590092e285445 856 Pfam PF05190 MutS family domain IV 435 524 1.8E-29 T 17-10-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 VI35_18490 9c829e370f001365d37590092e285445 856 PIRSF PIRSF037677 216 823 2.1E-126 T 17-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 VI35_18490 9c829e370f001365d37590092e285445 856 PIRSF PIRSF037677 6 190 1.5E-24 T 17-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 VI35_18490 9c829e370f001365d37590092e285445 856 Pfam PF05188 MutS domain II 136 261 4.2E-30 T 17-10-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 VI35_18490 9c829e370f001365d37590092e285445 856 Gene3D G3DSA:1.10.1420.10 394 510 2.2E-101 T 17-10-2018 VI35_18490 9c829e370f001365d37590092e285445 856 SUPERFAMILY SSF52540 574 805 3.95E-59 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_18490 9c829e370f001365d37590092e285445 856 Gene3D G3DSA:3.40.1170.10 9 129 7.7E-50 T 17-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 VI35_18490 9c829e370f001365d37590092e285445 856 SMART SM00534 614 801 1.2E-119 T 17-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 VI35_18490 9c829e370f001365d37590092e285445 856 Gene3D G3DSA:1.10.1420.10 274 566 2.2E-101 T 17-10-2018 VI35_18490 9c829e370f001365d37590092e285445 856 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 15 848 25.187 T 17-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 VI35_18490 9c829e370f001365d37590092e285445 856 SUPERFAMILY SSF53150 122 274 7.85E-42 T 17-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 VI35_18490 9c829e370f001365d37590092e285445 856 SUPERFAMILY SSF48334 275 572 3.53E-86 T 17-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily VI35_11050 df0693156379d327a5ac76416d07be91 291 Pfam PF13407 Periplasmic binding protein domain 27 276 1.2E-59 T 17-10-2018 IPR025997 Periplasmic binding protein VI35_11050 df0693156379d327a5ac76416d07be91 291 Gene3D G3DSA:3.40.50.2300 124 258 3.1E-96 T 17-10-2018 VI35_11050 df0693156379d327a5ac76416d07be91 291 Gene3D G3DSA:3.40.50.2300 30 276 3.1E-96 T 17-10-2018 VI35_11050 df0693156379d327a5ac76416d07be91 291 SUPERFAMILY SSF53822 8 291 5.96E-84 T 17-10-2018 IPR028082 Periplasmic binding protein-like I VI35_03415 59010ac2abadcdb9c41bf100b93b8cc8 595 SUPERFAMILY SSF117023 449 584 1.2E-30 T 17-10-2018 VI35_03415 59010ac2abadcdb9c41bf100b93b8cc8 595 SUPERFAMILY SSF57783 4 101 2.38E-37 T 17-10-2018 VI35_03415 59010ac2abadcdb9c41bf100b93b8cc8 595 SMART SM00493 259 330 1.4E-13 T 17-10-2018 IPR006171 TOPRIM domain VI35_03415 59010ac2abadcdb9c41bf100b93b8cc8 595 Gene3D G3DSA:3.40.1360.10 241 367 2.9E-41 T 17-10-2018 VI35_03415 59010ac2abadcdb9c41bf100b93b8cc8 595 SMART SM00766 452 582 1.2E-22 T 17-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 VI35_03415 59010ac2abadcdb9c41bf100b93b8cc8 595 TIGRFAM TIGR01391 dnaG: DNA primase 4 418 1.1E-145 T 17-10-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 VI35_03415 59010ac2abadcdb9c41bf100b93b8cc8 595 Pfam PF08275 DNA primase catalytic core, N-terminal domain 127 251 2.7E-39 T 17-10-2018 IPR013264 DNA primase, catalytic core, N-terminal VI35_03415 59010ac2abadcdb9c41bf100b93b8cc8 595 Hamap MF_00974 DNA primase [dnaG]. 4 583 29.122 T 17-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 VI35_03415 59010ac2abadcdb9c41bf100b93b8cc8 595 Pfam PF13662 Toprim domain 260 324 2.7E-13 T 17-10-2018 IPR006171 TOPRIM domain VI35_03415 59010ac2abadcdb9c41bf100b93b8cc8 595 PIRSF PIRSF002811 2 593 1.9E-140 T 17-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 VI35_03415 59010ac2abadcdb9c41bf100b93b8cc8 595 Pfam PF01807 CHC2 zinc finger 6 101 4.6E-40 T 17-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 VI35_03415 59010ac2abadcdb9c41bf100b93b8cc8 595 Pfam PF10410 DnaB-helicase binding domain of primase 370 423 5.7E-8 T 17-10-2018 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 VI35_03415 59010ac2abadcdb9c41bf100b93b8cc8 595 SUPERFAMILY SSF56731 117 424 9.59E-106 T 17-10-2018 VI35_03415 59010ac2abadcdb9c41bf100b93b8cc8 595 Gene3D G3DSA:3.90.580.10 1 102 2.4E-39 T 17-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 VI35_03415 59010ac2abadcdb9c41bf100b93b8cc8 595 Gene3D G3DSA:1.10.860.10 438 587 1.8E-29 T 17-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal VI35_03415 59010ac2abadcdb9c41bf100b93b8cc8 595 Gene3D G3DSA:3.90.980.10 116 240 2.5E-43 T 17-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily VI35_03415 59010ac2abadcdb9c41bf100b93b8cc8 595 Pfam PF08278 DNA primase DnaG DnaB-binding 454 581 3.5E-24 T 17-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 VI35_03415 59010ac2abadcdb9c41bf100b93b8cc8 595 SMART SM00400 36 90 9.9E-37 T 17-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 VI35_20690 dac5dd39f02ad4df28f25c7e76ad757f 244 SUPERFAMILY SSF46894 141 238 1.05E-21 T 17-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VI35_20690 dac5dd39f02ad4df28f25c7e76ad757f 244 Gene3D G3DSA:3.40.50.2300 3 127 3.5E-42 T 17-10-2018 VI35_20690 dac5dd39f02ad4df28f25c7e76ad757f 244 Pfam PF00486 Transcriptional regulatory protein, C terminal 163 236 2.5E-17 T 17-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VI35_20690 dac5dd39f02ad4df28f25c7e76ad757f 244 SUPERFAMILY SSF52172 4 133 9.11E-46 T 17-10-2018 IPR011006 CheY-like superfamily VI35_20690 dac5dd39f02ad4df28f25c7e76ad757f 244 Pfam PF00072 Response regulator receiver domain 12 120 3.0E-34 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_20690 dac5dd39f02ad4df28f25c7e76ad757f 244 Gene3D G3DSA:1.10.10.10 128 242 2.0E-28 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_20690 dac5dd39f02ad4df28f25c7e76ad757f 244 SMART SM00448 9 119 6.6E-48 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_20690 dac5dd39f02ad4df28f25c7e76ad757f 244 SMART SM00862 160 236 2.4E-15 T 17-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VI35_03045 d89b2cb3f9494bcc98474681d65f2f3d 309 Pfam PF03466 LysR substrate binding domain 105 296 1.4E-25 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_03045 d89b2cb3f9494bcc98474681d65f2f3d 309 SUPERFAMILY SSF53850 106 304 3.08E-23 T 17-10-2018 VI35_03045 d89b2cb3f9494bcc98474681d65f2f3d 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 23 81 3.6E-14 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_03045 d89b2cb3f9494bcc98474681d65f2f3d 309 Gene3D G3DSA:3.40.190.10 179 274 2.9E-44 T 17-10-2018 VI35_03045 d89b2cb3f9494bcc98474681d65f2f3d 309 Gene3D G3DSA:1.10.10.10 16 101 4.0E-20 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_03045 d89b2cb3f9494bcc98474681d65f2f3d 309 SUPERFAMILY SSF46785 16 127 5.44E-18 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_03045 d89b2cb3f9494bcc98474681d65f2f3d 309 Gene3D G3DSA:3.40.190.10 112 279 2.9E-44 T 17-10-2018 VI35_12655 b9865bb3fcc74f46c6b87d51e886f96f 328 Gene3D G3DSA:3.90.180.10 9 295 1.7E-89 T 17-10-2018 VI35_12655 b9865bb3fcc74f46c6b87d51e886f96f 328 Pfam PF00107 Zinc-binding dehydrogenase 156 244 6.4E-12 T 17-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 VI35_12655 b9865bb3fcc74f46c6b87d51e886f96f 328 SUPERFAMILY SSF50129 4 151 2.43E-35 T 17-10-2018 IPR011032 GroES-like superfamily VI35_12655 b9865bb3fcc74f46c6b87d51e886f96f 328 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 30 90 4.0E-5 T 17-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 VI35_12655 b9865bb3fcc74f46c6b87d51e886f96f 328 SUPERFAMILY SSF51735 117 254 1.55E-31 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_12655 b9865bb3fcc74f46c6b87d51e886f96f 328 SMART SM00829 13 325 1.2E-13 T 17-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 VI35_12655 b9865bb3fcc74f46c6b87d51e886f96f 328 Gene3D G3DSA:3.40.50.720 125 261 1.7E-89 T 17-10-2018 VI35_10135 f4573c230c142a7957dd57581681c6d7 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.6E-17 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_10135 f4573c230c142a7957dd57581681c6d7 311 Gene3D G3DSA:3.40.190.290 90 297 2.7E-66 T 17-10-2018 VI35_10135 f4573c230c142a7957dd57581681c6d7 311 SUPERFAMILY SSF46785 4 85 2.07E-20 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_10135 f4573c230c142a7957dd57581681c6d7 311 SUPERFAMILY SSF53850 88 301 3.08E-47 T 17-10-2018 VI35_10135 f4573c230c142a7957dd57581681c6d7 311 Pfam PF03466 LysR substrate binding domain 87 295 1.2E-43 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_10135 f4573c230c142a7957dd57581681c6d7 311 Gene3D G3DSA:1.10.10.10 3 86 4.7E-25 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_04900 9d5c8f08dfbcb56b6d4e733f8fdee48e 316 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 34 181 7.6E-58 T 17-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 VI35_04900 9d5c8f08dfbcb56b6d4e733f8fdee48e 316 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 182 249 4.9E-24 T 17-10-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 VI35_04900 9d5c8f08dfbcb56b6d4e733f8fdee48e 316 SUPERFAMILY SSF55120 12 249 1.58E-84 T 17-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_04900 9d5c8f08dfbcb56b6d4e733f8fdee48e 316 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 12 310 19.421 T 17-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_04900 9d5c8f08dfbcb56b6d4e733f8fdee48e 316 Gene3D G3DSA:3.30.2350.10 2 250 4.2E-97 T 17-10-2018 VI35_04900 9d5c8f08dfbcb56b6d4e733f8fdee48e 316 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 253 310 5.2E-19 T 17-10-2018 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_04900 9d5c8f08dfbcb56b6d4e733f8fdee48e 316 Gene3D G3DSA:2.30.130.10 251 314 1.1E-22 T 17-10-2018 IPR036974 PUA domain superfamily GO:0003723 VI35_04900 9d5c8f08dfbcb56b6d4e733f8fdee48e 316 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 13 220 5.0E-88 T 17-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_04900 9d5c8f08dfbcb56b6d4e733f8fdee48e 316 SUPERFAMILY SSF88697 252 312 5.96E-13 T 17-10-2018 IPR015947 PUA-like superfamily VI35_00490 e3053bba28b9a6aec28431f6a225a11d 356 Pfam PF02661 Fic/DOC family 113 208 8.7E-19 T 17-10-2018 IPR003812 Fido domain VI35_00490 e3053bba28b9a6aec28431f6a225a11d 356 PIRSF PIRSF038925 1 355 2.0E-102 T 17-10-2018 IPR026287 Adenosine monophosphate-protein transferase VI35_00490 e3053bba28b9a6aec28431f6a225a11d 356 Gene3D G3DSA:1.10.3290.10 39 272 6.0E-44 T 17-10-2018 IPR036597 Fido-like domain superfamily VI35_00490 e3053bba28b9a6aec28431f6a225a11d 356 SUPERFAMILY SSF140931 86 274 2.22E-34 T 17-10-2018 IPR036597 Fido-like domain superfamily VI35_00490 e3053bba28b9a6aec28431f6a225a11d 356 Pfam PF13784 Fic/DOC family N-terminal 21 99 5.8E-25 T 17-10-2018 IPR025758 Fic/DOC N-terminal VI35_02205 0966cb30eefa5c6e2e556e9c7c0415ea 152 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 1 133 3.0E-50 T 17-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 VI35_02205 0966cb30eefa5c6e2e556e9c7c0415ea 152 Pfam PF02381 MraZ protein, putative antitoxin-like 77 131 1.5E-18 T 17-10-2018 IPR020603 MraZ domain VI35_02205 0966cb30eefa5c6e2e556e9c7c0415ea 152 Pfam PF02381 MraZ protein, putative antitoxin-like 1 75 6.4E-20 T 17-10-2018 IPR020603 MraZ domain VI35_02205 0966cb30eefa5c6e2e556e9c7c0415ea 152 SUPERFAMILY SSF89447 2 132 1.05E-46 T 17-10-2018 IPR037914 SpoVT-AbrB domain superfamily VI35_02205 0966cb30eefa5c6e2e556e9c7c0415ea 152 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 152 57.158 T 17-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 VI35_02205 0966cb30eefa5c6e2e556e9c7c0415ea 152 Gene3D G3DSA:2.40.330.20 1 137 5.4E-44 T 17-10-2018 IPR038619 MraZ superfamily VI35_02205 0966cb30eefa5c6e2e556e9c7c0415ea 152 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 2 151 9.4E-54 T 17-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 VI35_03025 e672a4d94b6295ef8a3087ea30fc4d59 259 Pfam PF00696 Amino acid kinase family 5 236 6.1E-40 T 17-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 VI35_03025 e672a4d94b6295ef8a3087ea30fc4d59 259 Hamap MF_00082 Acetylglutamate kinase [argB]. 3 252 42.218 T 17-10-2018 IPR037528 Acetylglutamate kinase ArgB GO:0003991|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 VI35_03025 e672a4d94b6295ef8a3087ea30fc4d59 259 PIRSF PIRSF000728 1 258 8.4E-69 T 17-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 VI35_03025 e672a4d94b6295ef8a3087ea30fc4d59 259 TIGRFAM TIGR00761 argB: acetylglutamate kinase 5 234 2.0E-64 T 17-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 VI35_03025 e672a4d94b6295ef8a3087ea30fc4d59 259 Gene3D G3DSA:3.40.1160.10 1 258 4.1E-71 T 17-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VI35_03025 e672a4d94b6295ef8a3087ea30fc4d59 259 SUPERFAMILY SSF53633 4 258 4.58E-62 T 17-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VI35_12970 28e89d1e34ab027d436d901dfc9b0ec9 1058 Gene3D G3DSA:2.150.10.10 776 895 6.5E-21 T 17-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal VI35_12970 28e89d1e34ab027d436d901dfc9b0ec9 1058 Gene3D G3DSA:2.150.10.10 896 1045 7.7E-27 T 17-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal VI35_12970 28e89d1e34ab027d436d901dfc9b0ec9 1058 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 828 846 - T 17-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site VI35_12970 28e89d1e34ab027d436d901dfc9b0ec9 1058 Pfam PF13519 von Willebrand factor type A domain 374 485 3.1E-9 T 17-10-2018 IPR002035 von Willebrand factor, type A VI35_12970 28e89d1e34ab027d436d901dfc9b0ec9 1058 PRINTS PR00313 NodO calcium binding signature 841 849 5.1E-11 T 17-10-2018 VI35_12970 28e89d1e34ab027d436d901dfc9b0ec9 1058 PRINTS PR00313 NodO calcium binding signature 850 858 5.1E-11 T 17-10-2018 VI35_12970 28e89d1e34ab027d436d901dfc9b0ec9 1058 PRINTS PR00313 NodO calcium binding signature 820 831 5.1E-11 T 17-10-2018 VI35_12970 28e89d1e34ab027d436d901dfc9b0ec9 1058 PRINTS PR00313 NodO calcium binding signature 947 956 5.1E-11 T 17-10-2018 VI35_12970 28e89d1e34ab027d436d901dfc9b0ec9 1058 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 920 936 0.046 T 17-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 VI35_12970 28e89d1e34ab027d436d901dfc9b0ec9 1058 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 937 954 0.024 T 17-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 VI35_12970 28e89d1e34ab027d436d901dfc9b0ec9 1058 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 849 865 0.0028 T 17-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 VI35_12970 28e89d1e34ab027d436d901dfc9b0ec9 1058 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 832 848 0.004 T 17-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 VI35_12970 28e89d1e34ab027d436d901dfc9b0ec9 1058 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 813 830 0.0011 T 17-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 VI35_12970 28e89d1e34ab027d436d901dfc9b0ec9 1058 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 925 943 - T 17-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site VI35_12970 28e89d1e34ab027d436d901dfc9b0ec9 1058 SUPERFAMILY SSF51120 851 1035 3.92E-23 T 17-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal VI35_12970 28e89d1e34ab027d436d901dfc9b0ec9 1058 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 837 855 - T 17-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site VI35_12970 28e89d1e34ab027d436d901dfc9b0ec9 1058 SUPERFAMILY SSF53300 370 579 1.63E-20 T 17-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VI35_12970 28e89d1e34ab027d436d901dfc9b0ec9 1058 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 934 952 - T 17-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site VI35_12970 28e89d1e34ab027d436d901dfc9b0ec9 1058 SMART SM00327 371 583 9.0E-14 T 17-10-2018 IPR002035 von Willebrand factor, type A VI35_12970 28e89d1e34ab027d436d901dfc9b0ec9 1058 Gene3D G3DSA:3.40.50.410 366 587 3.3E-21 T 17-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VI35_12970 28e89d1e34ab027d436d901dfc9b0ec9 1058 TIGRFAM TIGR03661 T1SS_VCA0849: type I secretion C-terminal target domain (VC_A0849 subclass) 965 1055 7.0E-19 T 17-10-2018 IPR019960 Type I secretion C-terminal target domain, VC_A0849 subclass VI35_12970 28e89d1e34ab027d436d901dfc9b0ec9 1058 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 819 837 - T 17-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site VI35_12970 28e89d1e34ab027d436d901dfc9b0ec9 1058 SUPERFAMILY SSF51120 748 894 6.67E-19 T 17-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal VI35_06880 2ba949bab1b893efc5c1cb6286c96b02 252 PRINTS PR00111 Alpha/beta hydrolase fold signature 82 95 7.4E-8 T 17-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VI35_06880 2ba949bab1b893efc5c1cb6286c96b02 252 PRINTS PR00111 Alpha/beta hydrolase fold signature 40 55 7.4E-8 T 17-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VI35_06880 2ba949bab1b893efc5c1cb6286c96b02 252 PRINTS PR00111 Alpha/beta hydrolase fold signature 96 109 7.4E-8 T 17-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VI35_06880 2ba949bab1b893efc5c1cb6286c96b02 252 Pfam PF00561 alpha/beta hydrolase fold 15 132 1.3E-18 T 17-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VI35_06880 2ba949bab1b893efc5c1cb6286c96b02 252 SUPERFAMILY SSF53474 5 250 1.62E-47 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_06880 2ba949bab1b893efc5c1cb6286c96b02 252 Gene3D G3DSA:3.40.50.1820 2 250 1.6E-48 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_09585 f74052d9dc8b7cbec8ed43142602b3d1 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 26.975 T 17-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 VI35_09585 f74052d9dc8b7cbec8ed43142602b3d1 72 SMART SM00316 4 72 4.6E-6 T 17-10-2018 IPR022967 RNA-binding domain, S1 VI35_09585 f74052d9dc8b7cbec8ed43142602b3d1 72 SUPERFAMILY SSF50249 1 70 3.83E-28 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_09585 f74052d9dc8b7cbec8ed43142602b3d1 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 7.2E-27 T 17-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 VI35_09585 f74052d9dc8b7cbec8ed43142602b3d1 72 Gene3D G3DSA:2.40.50.140 1 72 2.7E-35 T 17-10-2018 VI35_09585 f74052d9dc8b7cbec8ed43142602b3d1 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 71 1.2E-37 T 17-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 VI35_12330 bca262f091192f39b9c0b21418329a6a 615 Gene3D G3DSA:1.20.1270.10 519 614 2.5E-23 T 17-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 VI35_12330 bca262f091192f39b9c0b21418329a6a 615 Gene3D G3DSA:3.30.420.40 192 359 8.6E-111 T 17-10-2018 VI35_12330 bca262f091192f39b9c0b21418329a6a 615 TIGRFAM TIGR01991 HscA: Fe-S protein assembly chaperone HscA 21 613 3.0E-267 T 17-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 VI35_12330 bca262f091192f39b9c0b21418329a6a 615 SUPERFAMILY SSF53067 198 375 2.59E-50 T 17-10-2018 VI35_12330 bca262f091192f39b9c0b21418329a6a 615 SUPERFAMILY SSF100920 383 534 6.15E-48 T 17-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 VI35_12330 bca262f091192f39b9c0b21418329a6a 615 Gene3D G3DSA:2.60.34.10 377 518 1.1E-47 T 17-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 VI35_12330 bca262f091192f39b9c0b21418329a6a 615 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 24 31 - T 17-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 VI35_12330 bca262f091192f39b9c0b21418329a6a 615 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 203 216 - T 17-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 VI35_12330 bca262f091192f39b9c0b21418329a6a 615 PRINTS PR00301 70kDa heat shock protein signature 358 378 6.4E-58 T 17-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VI35_12330 bca262f091192f39b9c0b21418329a6a 615 PRINTS PR00301 70kDa heat shock protein signature 20 33 6.4E-58 T 17-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VI35_12330 bca262f091192f39b9c0b21418329a6a 615 PRINTS PR00301 70kDa heat shock protein signature 464 480 6.4E-58 T 17-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VI35_12330 bca262f091192f39b9c0b21418329a6a 615 PRINTS PR00301 70kDa heat shock protein signature 150 170 6.4E-58 T 17-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VI35_12330 bca262f091192f39b9c0b21418329a6a 615 PRINTS PR00301 70kDa heat shock protein signature 70 78 6.4E-58 T 17-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VI35_12330 bca262f091192f39b9c0b21418329a6a 615 PRINTS PR00301 70kDa heat shock protein signature 48 60 6.4E-58 T 17-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VI35_12330 bca262f091192f39b9c0b21418329a6a 615 PRINTS PR00301 70kDa heat shock protein signature 209 219 6.4E-58 T 17-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VI35_12330 bca262f091192f39b9c0b21418329a6a 615 PRINTS PR00301 70kDa heat shock protein signature 383 402 6.4E-58 T 17-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VI35_12330 bca262f091192f39b9c0b21418329a6a 615 PRINTS PR00301 70kDa heat shock protein signature 327 343 6.4E-58 T 17-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VI35_12330 bca262f091192f39b9c0b21418329a6a 615 SUPERFAMILY SSF100934 502 613 1.73E-31 T 17-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 VI35_12330 bca262f091192f39b9c0b21418329a6a 615 Gene3D G3DSA:3.30.420.40 22 372 8.6E-111 T 17-10-2018 VI35_12330 bca262f091192f39b9c0b21418329a6a 615 Hamap MF_00679 Chaperone protein HscA [hscA]. 1 615 44.576 T 17-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 VI35_12330 bca262f091192f39b9c0b21418329a6a 615 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 330 344 - T 17-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 VI35_12330 bca262f091192f39b9c0b21418329a6a 615 Pfam PF00012 Hsp70 protein 21 597 1.7E-187 T 17-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VI35_12330 bca262f091192f39b9c0b21418329a6a 615 SUPERFAMILY SSF53067 19 194 3.45E-50 T 17-10-2018 VI35_12330 bca262f091192f39b9c0b21418329a6a 615 Gene3D G3DSA:3.90.640.10 236 309 8.6E-111 T 17-10-2018 VI35_20105 1bcb686205cc62807b2685fbd030e3bf 273 Gene3D G3DSA:3.40.50.720 115 236 1.8E-81 T 17-10-2018 VI35_20105 1bcb686205cc62807b2685fbd030e3bf 273 Gene3D G3DSA:3.40.50.10860 6 257 1.8E-81 T 17-10-2018 VI35_20105 1bcb686205cc62807b2685fbd030e3bf 273 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 4 270 2.4E-81 T 17-10-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 VI35_20105 1bcb686205cc62807b2685fbd030e3bf 273 SUPERFAMILY SSF53223 1 101 9.78E-30 T 17-10-2018 VI35_20105 1bcb686205cc62807b2685fbd030e3bf 273 SUPERFAMILY SSF51735 102 268 2.64E-42 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_20105 1bcb686205cc62807b2685fbd030e3bf 273 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 6 88 2.9E-24 T 17-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 VI35_20105 1bcb686205cc62807b2685fbd030e3bf 273 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 1 269 31.831 T 17-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 VI35_20105 1bcb686205cc62807b2685fbd030e3bf 273 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 116 191 1.3E-11 T 17-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase VI35_11820 2593a120a8f26fe19d9efaab4b382cbc 46 PIRSF PIRSF037205 1 46 8.5E-26 T 17-10-2018 IPR017136 Uncharacterised conserved protein UCP037205 VI35_11820 2593a120a8f26fe19d9efaab4b382cbc 46 Pfam PF10013 Uncharacterized protein conserved in bacteria (DUF2256) 4 41 4.1E-22 T 17-10-2018 IPR017136 Uncharacterised conserved protein UCP037205 VI35_09650 6158fab7cdd6f4919989009679fc01fe 506 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 465 45.388 T 17-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 VI35_09650 6158fab7cdd6f4919989009679fc01fe 506 SUPERFAMILY SSF53271 251 484 5.38E-72 T 17-10-2018 IPR029057 Phosphoribosyltransferase-like VI35_09650 6158fab7cdd6f4919989009679fc01fe 506 Pfam PF13522 Glutamine amidotransferase domain 64 201 3.6E-16 T 17-10-2018 VI35_09650 6158fab7cdd6f4919989009679fc01fe 506 Gene3D G3DSA:3.60.20.10 2 413 1.7E-159 T 17-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VI35_09650 6158fab7cdd6f4919989009679fc01fe 506 Pfam PF00156 Phosphoribosyl transferase domain 280 393 1.4E-8 T 17-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 VI35_09650 6158fab7cdd6f4919989009679fc01fe 506 SUPERFAMILY SSF56235 2 258 3.35E-73 T 17-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VI35_09650 6158fab7cdd6f4919989009679fc01fe 506 Gene3D G3DSA:3.40.50.2020 278 442 1.7E-159 T 17-10-2018 VI35_09650 6158fab7cdd6f4919989009679fc01fe 506 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 465 3.8E-163 T 17-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 VI35_09650 6158fab7cdd6f4919989009679fc01fe 506 PIRSF PIRSF000485 1 482 4.4E-167 T 17-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 VI35_20260 d811d737ed5e1e32a4d1ba47f9ef6de0 113 SUPERFAMILY SSF50044 64 109 2.99E-9 T 17-10-2018 IPR036028 SH3-like domain superfamily GO:0005515 VI35_20260 d811d737ed5e1e32a4d1ba47f9ef6de0 113 PIRSF PIRSF034961 1 112 3.1E-30 T 17-10-2018 IPR014593 Uncharacterised conserved protein UCP034961, SH3-2 VI35_20260 d811d737ed5e1e32a4d1ba47f9ef6de0 113 Gene3D G3DSA:2.30.30.40 58 113 4.2E-8 T 17-10-2018 VI35_20260 d811d737ed5e1e32a4d1ba47f9ef6de0 113 SMART SM00326 4 59 4.7 T 17-10-2018 IPR001452 SH3 domain GO:0005515 VI35_20260 d811d737ed5e1e32a4d1ba47f9ef6de0 113 SMART SM00326 61 113 1.1E-6 T 17-10-2018 IPR001452 SH3 domain GO:0005515 VI35_20260 d811d737ed5e1e32a4d1ba47f9ef6de0 113 SUPERFAMILY SSF50044 8 59 1.63E-6 T 17-10-2018 IPR036028 SH3-like domain superfamily GO:0005515 VI35_11835 f4ce5b67a14c7c400a102899e63ed71e 221 Gene3D G3DSA:1.10.357.10 14 194 3.5E-22 T 17-10-2018 VI35_11835 f4ce5b67a14c7c400a102899e63ed71e 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 2.2E-5 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_11835 f4ce5b67a14c7c400a102899e63ed71e 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 2.2E-5 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_11835 f4ce5b67a14c7c400a102899e63ed71e 221 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 60 1.3E-11 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_11835 f4ce5b67a14c7c400a102899e63ed71e 221 SUPERFAMILY SSF46689 1 87 2.59E-15 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_02950 fafcebb5b3b604acf1648ae034b63f91 817 PIRSF PIRSF000727 19 817 7.7E-246 T 17-10-2018 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I GO:0004072|GO:0004412|GO:0009067|GO:0055114 KEGG: 00260+1.1.1.3+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+1.1.1.3+2.7.2.4|KEGG: 00300+1.1.1.3+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VI35_02950 fafcebb5b3b604acf1648ae034b63f91 817 Gene3D G3DSA:3.40.50.720 469 813 3.6E-103 T 17-10-2018 VI35_02950 fafcebb5b3b604acf1648ae034b63f91 817 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 661 683 - T 17-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 VI35_02950 fafcebb5b3b604acf1648ae034b63f91 817 Pfam PF00696 Amino acid kinase family 19 288 1.4E-43 T 17-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 VI35_02950 fafcebb5b3b604acf1648ae034b63f91 817 SUPERFAMILY SSF51735 467 637 1.75E-21 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_02950 fafcebb5b3b604acf1648ae034b63f91 817 SUPERFAMILY SSF53633 18 305 1.97E-61 T 17-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VI35_02950 fafcebb5b3b604acf1648ae034b63f91 817 Gene3D G3DSA:3.30.360.10 626 796 3.6E-103 T 17-10-2018 VI35_02950 fafcebb5b3b604acf1648ae034b63f91 817 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 474 606 1.4E-10 T 17-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 VI35_02950 fafcebb5b3b604acf1648ae034b63f91 817 Gene3D G3DSA:3.40.1160.10 21 304 3.4E-74 T 17-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VI35_02950 fafcebb5b3b604acf1648ae034b63f91 817 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 21 462 4.6E-66 T 17-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VI35_02950 fafcebb5b3b604acf1648ae034b63f91 817 Gene3D G3DSA:1.20.120.1320 58 152 3.4E-74 T 17-10-2018 VI35_02950 fafcebb5b3b604acf1648ae034b63f91 817 SUPERFAMILY SSF55347 615 798 1.18E-44 T 17-10-2018 VI35_02950 fafcebb5b3b604acf1648ae034b63f91 817 Pfam PF00742 Homoserine dehydrogenase 615 810 1.4E-43 T 17-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 VI35_02950 fafcebb5b3b604acf1648ae034b63f91 817 ProSitePatterns PS00324 Aspartokinase signature. 21 29 - T 17-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VI35_00010 d6217e72f2fd30d117829d4309d37beb 367 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 246 366 9.1E-41 T 17-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 VI35_00010 d6217e72f2fd30d117829d4309d37beb 367 SUPERFAMILY SSF55979 127 245 5.71E-27 T 17-10-2018 VI35_00010 d6217e72f2fd30d117829d4309d37beb 367 Gene3D G3DSA:3.10.150.10 249 367 1.1E-39 T 17-10-2018 VI35_00010 d6217e72f2fd30d117829d4309d37beb 367 SUPERFAMILY SSF55979 1 118 2.15E-27 T 17-10-2018 VI35_00010 d6217e72f2fd30d117829d4309d37beb 367 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 366 1.6E-107 T 17-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 VI35_00010 d6217e72f2fd30d117829d4309d37beb 367 PIRSF PIRSF000804 1 367 5.8E-114 T 17-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 VI35_00010 d6217e72f2fd30d117829d4309d37beb 367 SUPERFAMILY SSF55979 246 367 1.05E-37 T 17-10-2018 VI35_00010 d6217e72f2fd30d117829d4309d37beb 367 Gene3D G3DSA:3.10.150.10 1 123 2.4E-40 T 17-10-2018 VI35_00010 d6217e72f2fd30d117829d4309d37beb 367 SMART SM00480 17 363 6.7E-146 T 17-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 VI35_00010 d6217e72f2fd30d117829d4309d37beb 367 Gene3D G3DSA:3.10.150.10 125 248 4.1E-35 T 17-10-2018 VI35_00010 d6217e72f2fd30d117829d4309d37beb 367 Pfam PF02767 DNA polymerase III beta subunit, central domain 130 244 6.2E-34 T 17-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 VI35_00010 d6217e72f2fd30d117829d4309d37beb 367 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 119 1.3E-36 T 17-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 VI35_07220 719501f3cc3a87f81a08628da937c21f 551 SUPERFAMILY SSF160964 19 296 3.4E-66 T 17-10-2018 VI35_07220 719501f3cc3a87f81a08628da937c21f 551 Pfam PF14785 Maltose transport system permease protein MalF P2 domain 106 296 3.9E-50 T 17-10-2018 IPR029345 Maltose transport system permease protein MalF, P2 domain VI35_07220 719501f3cc3a87f81a08628da937c21f 551 Gene3D G3DSA:3.10.650.10 104 305 8.1E-33 T 17-10-2018 VI35_07220 719501f3cc3a87f81a08628da937c21f 551 SUPERFAMILY SSF161098 297 539 1.09E-59 T 17-10-2018 IPR035906 MetI-like superfamily VI35_07220 719501f3cc3a87f81a08628da937c21f 551 Gene3D G3DSA:1.10.3720.10 306 549 1.3E-70 T 17-10-2018 IPR035906 MetI-like superfamily VI35_07220 719501f3cc3a87f81a08628da937c21f 551 Gene3D G3DSA:2.40.430.10 125 228 8.1E-33 T 17-10-2018 VI35_07220 719501f3cc3a87f81a08628da937c21f 551 Gene3D G3DSA:1.20.58.370 11 101 4.9E-35 T 17-10-2018 IPR035277 MalF, N-terminal VI35_07220 719501f3cc3a87f81a08628da937c21f 551 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 333 538 4.7E-18 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_08485 8cd68f8dec8f5d37addb6420561e3582 773 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 22 506 3.9E-150 T 17-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein VI35_08485 8cd68f8dec8f5d37addb6420561e3582 773 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 9 524 2.0E-205 T 17-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset VI35_08485 8cd68f8dec8f5d37addb6420561e3582 773 Gene3D G3DSA:3.30.1920.30 221 284 3.1E-93 T 17-10-2018 VI35_08485 8cd68f8dec8f5d37addb6420561e3582 773 SUPERFAMILY SSF69279 197 359 1.87E-42 T 17-10-2018 VI35_08485 8cd68f8dec8f5d37addb6420561e3582 773 SUPERFAMILY SSF69349 445 626 1.65E-47 T 17-10-2018 VI35_08485 8cd68f8dec8f5d37addb6420561e3582 773 Gene3D G3DSA:2.40.50.230 359 459 7.6E-42 T 17-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily VI35_08485 8cd68f8dec8f5d37addb6420561e3582 773 Pfam PF05954 Phage late control gene D protein (GPD) 29 325 1.4E-89 T 17-10-2018 VI35_08485 8cd68f8dec8f5d37addb6420561e3582 773 Gene3D G3DSA:3.55.50.10 98 189 3.1E-93 T 17-10-2018 VI35_08485 8cd68f8dec8f5d37addb6420561e3582 773 Gene3D G3DSA:2.30.110.50 21 328 3.1E-93 T 17-10-2018 VI35_08485 8cd68f8dec8f5d37addb6420561e3582 773 SUPERFAMILY SSF69255 367 454 2.59E-33 T 17-10-2018 VI35_08485 8cd68f8dec8f5d37addb6420561e3582 773 SUPERFAMILY SSF69279 14 185 5.95E-57 T 17-10-2018 VI35_19075 31fe7aa313ce8dc05b7d7e14457493f7 276 Gene3D G3DSA:3.10.310.10 5 272 4.1E-107 T 17-10-2018 VI35_19075 31fe7aa313ce8dc05b7d7e14457493f7 276 Pfam PF01678 Diaminopimelate epimerase 5 125 1.2E-34 T 17-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 VI35_19075 31fe7aa313ce8dc05b7d7e14457493f7 276 Pfam PF01678 Diaminopimelate epimerase 154 269 1.2E-30 T 17-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 VI35_19075 31fe7aa313ce8dc05b7d7e14457493f7 276 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 3 276 39.711 T 17-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 VI35_19075 31fe7aa313ce8dc05b7d7e14457493f7 276 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 3 275 1.5E-101 T 17-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 VI35_19075 31fe7aa313ce8dc05b7d7e14457493f7 276 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 66 80 - T 17-10-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 VI35_19075 31fe7aa313ce8dc05b7d7e14457493f7 276 SUPERFAMILY SSF54506 3 276 8.64E-56 T 17-10-2018 VI35_19075 31fe7aa313ce8dc05b7d7e14457493f7 276 Gene3D G3DSA:3.10.310.10 117 263 4.1E-107 T 17-10-2018 VI35_02740 53fcf5a2457f3c133e8497d50a6bd463 335 Gene3D G3DSA:3.40.50.1110 14 332 2.4E-48 T 17-10-2018 IPR036514 SGNH hydrolase superfamily VI35_02740 53fcf5a2457f3c133e8497d50a6bd463 335 Pfam PF00657 GDSL-like Lipase/Acylhydrolase 28 321 3.0E-27 T 17-10-2018 IPR001087 GDSL lipase/esterase GO:0016788 VI35_02740 53fcf5a2457f3c133e8497d50a6bd463 335 SUPERFAMILY SSF52266 27 329 4.19E-25 T 17-10-2018 VI35_02740 53fcf5a2457f3c133e8497d50a6bd463 335 ProSitePatterns PS01098 Lipolytic enzymes "G-D-S-L" family, serine active site. 28 39 - T 17-10-2018 IPR008265 Lipase, GDSL, active site GO:0006629|GO:0016298 Reactome: R-HSA-1482788|Reactome: R-HSA-975634 VI35_19905 1bfd2f0ceab82082acbb14bc1ae28c45 433 SMART SM00304 167 219 7.4E-9 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_19905 1bfd2f0ceab82082acbb14bc1ae28c45 433 SMART SM00387 319 427 9.4E-25 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_19905 1bfd2f0ceab82082acbb14bc1ae28c45 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 354 368 4.6E-9 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_19905 1bfd2f0ceab82082acbb14bc1ae28c45 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 387 405 4.6E-9 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_19905 1bfd2f0ceab82082acbb14bc1ae28c45 433 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 322 426 1.0E-18 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_19905 1bfd2f0ceab82082acbb14bc1ae28c45 433 Gene3D G3DSA:1.10.287.130 164 275 3.2E-25 T 17-10-2018 VI35_19905 1bfd2f0ceab82082acbb14bc1ae28c45 433 Gene3D G3DSA:3.30.565.10 282 429 4.5E-34 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_19905 1bfd2f0ceab82082acbb14bc1ae28c45 433 Pfam PF00672 HAMP domain 167 214 6.4E-9 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_19905 1bfd2f0ceab82082acbb14bc1ae28c45 433 SMART SM00388 220 280 1.6E-10 T 17-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VI35_19905 1bfd2f0ceab82082acbb14bc1ae28c45 433 SUPERFAMILY SSF47384 203 279 1.9E-12 T 17-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VI35_19905 1bfd2f0ceab82082acbb14bc1ae28c45 433 SUPERFAMILY SSF158472 167 218 6.54E-6 T 17-10-2018 VI35_19905 1bfd2f0ceab82082acbb14bc1ae28c45 433 SUPERFAMILY SSF55874 280 427 3.8E-31 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_19905 1bfd2f0ceab82082acbb14bc1ae28c45 433 Pfam PF00512 His Kinase A (phospho-acceptor) domain 221 287 2.6E-8 T 17-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VI35_14160 fca9be37b6626ac8e66baf7029f1fadc 104 Pfam PF12321 Protein of unknown function (DUF3634) 1 92 1.5E-20 T 17-10-2018 IPR022090 Protein of unknown function DUF3634 VI35_11870 48a81af1d3241a2472e768a5f1840df3 714 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 60 714 1.1E-116 T 17-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 VI35_11870 48a81af1d3241a2472e768a5f1840df3 714 Pfam PF07715 TonB-dependent Receptor Plug Domain 59 160 4.3E-18 T 17-10-2018 IPR012910 TonB-dependent receptor, plug domain VI35_11870 48a81af1d3241a2472e768a5f1840df3 714 Pfam PF00593 TonB dependent receptor 232 712 5.8E-57 T 17-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel VI35_11870 48a81af1d3241a2472e768a5f1840df3 714 Gene3D G3DSA:2.40.170.20 172 714 9.6E-133 T 17-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VI35_11870 48a81af1d3241a2472e768a5f1840df3 714 Gene3D G3DSA:2.170.130.10 36 171 4.7E-32 T 17-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily VI35_11870 48a81af1d3241a2472e768a5f1840df3 714 SUPERFAMILY SSF56935 26 714 1.04E-131 T 17-10-2018 VI35_11870 48a81af1d3241a2472e768a5f1840df3 714 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 45 - T 17-10-2018 IPR010916 TonB box, conserved site VI35_17000 b5f1553896cd84eaa1f54849e198d81b 283 SMART SM00507 207 265 1.1E-9 T 17-10-2018 IPR003615 HNH nuclease VI35_17000 b5f1553896cd84eaa1f54849e198d81b 283 Gene3D G3DSA:3.30.40.60 181 281 1.1E-11 T 17-10-2018 VI35_17000 b5f1553896cd84eaa1f54849e198d81b 283 Pfam PF01844 HNH endonuclease 220 267 9.0E-8 T 17-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 VI35_13020 225ad62b6115a4f54a2942c237e2a664 471 TIGRFAM TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit 6 471 9.1E-246 T 17-10-2018 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 GO:0006537|GO:0016639 VI35_13020 225ad62b6115a4f54a2942c237e2a664 471 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 147 458 9.5E-22 T 17-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VI35_13020 225ad62b6115a4f54a2942c237e2a664 471 PRINTS PR00419 Adrenodoxin reductase family signature 148 170 1.5E-35 T 17-10-2018 VI35_13020 225ad62b6115a4f54a2942c237e2a664 471 PRINTS PR00419 Adrenodoxin reductase family signature 171 184 1.5E-35 T 17-10-2018 VI35_13020 225ad62b6115a4f54a2942c237e2a664 471 PRINTS PR00419 Adrenodoxin reductase family signature 323 336 1.5E-35 T 17-10-2018 VI35_13020 225ad62b6115a4f54a2942c237e2a664 471 PRINTS PR00419 Adrenodoxin reductase family signature 213 223 1.5E-35 T 17-10-2018 VI35_13020 225ad62b6115a4f54a2942c237e2a664 471 PRINTS PR00419 Adrenodoxin reductase family signature 289 303 1.5E-35 T 17-10-2018 VI35_13020 225ad62b6115a4f54a2942c237e2a664 471 Gene3D G3DSA:1.10.1060.10 13 145 3.1E-33 T 17-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VI35_13020 225ad62b6115a4f54a2942c237e2a664 471 Gene3D G3DSA:3.50.50.60 253 399 7.4E-42 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_13020 225ad62b6115a4f54a2942c237e2a664 471 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 25 134 3.7E-37 T 17-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 VI35_13020 225ad62b6115a4f54a2942c237e2a664 471 Gene3D G3DSA:3.40.50.720 146 252 4.3E-15 T 17-10-2018 VI35_13020 225ad62b6115a4f54a2942c237e2a664 471 SUPERFAMILY SSF46548 6 157 4.34E-40 T 17-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VI35_13020 225ad62b6115a4f54a2942c237e2a664 471 SUPERFAMILY SSF51971 145 400 1.65E-67 T 17-10-2018 VI35_11655 136449cd6fc9442efd59616b4b98ab7f 237 Gene3D G3DSA:1.10.10.10 1 79 6.3E-23 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_11655 136449cd6fc9442efd59616b4b98ab7f 237 TIGRFAM TIGR02812 fadR_gamma: fatty acid metabolism transcriptional regulator FadR 2 235 5.4E-120 T 17-10-2018 IPR014178 Fatty acid response transcription factor FadR GO:0000062|GO:0003677|GO:0003700|GO:0019217 VI35_11655 136449cd6fc9442efd59616b4b98ab7f 237 Gene3D G3DSA:1.20.120.530 80 237 5.8E-41 T 17-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal VI35_11655 136449cd6fc9442efd59616b4b98ab7f 237 Hamap MF_00696 Fatty acid metabolism regulator protein [fadR]. 1 237 161.132 T 17-10-2018 IPR014178 Fatty acid response transcription factor FadR GO:0000062|GO:0003677|GO:0003700|GO:0019217 VI35_11655 136449cd6fc9442efd59616b4b98ab7f 237 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 71 5.2E-20 T 17-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VI35_11655 136449cd6fc9442efd59616b4b98ab7f 237 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 31 45 2.7E-9 T 17-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VI35_11655 136449cd6fc9442efd59616b4b98ab7f 237 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 61 2.7E-9 T 17-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VI35_11655 136449cd6fc9442efd59616b4b98ab7f 237 SUPERFAMILY SSF46785 11 75 2.81E-17 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_11655 136449cd6fc9442efd59616b4b98ab7f 237 Pfam PF07840 FadR C-terminal domain 72 234 5.9E-73 T 17-10-2018 IPR028374 FadR, C-terminal domain GO:0000062|GO:0019217 VI35_11655 136449cd6fc9442efd59616b4b98ab7f 237 SMART SM00345 12 71 1.0E-22 T 17-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VI35_11655 136449cd6fc9442efd59616b4b98ab7f 237 SUPERFAMILY SSF48008 79 230 2.22E-59 T 17-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal VI35_20575 5aa9900fd5295948c23a624834fee2e4 587 Gene3D G3DSA:3.40.50.2000 1 164 1.5E-22 T 17-10-2018 VI35_20575 5aa9900fd5295948c23a624834fee2e4 587 Pfam PF01522 Polysaccharide deacetylase 406 542 2.0E-31 T 17-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 VI35_20575 5aa9900fd5295948c23a624834fee2e4 587 Gene3D G3DSA:3.20.20.370 340 578 2.1E-58 T 17-10-2018 VI35_20575 5aa9900fd5295948c23a624834fee2e4 587 SUPERFAMILY SSF88713 367 563 1.78E-39 T 17-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 VI35_20575 5aa9900fd5295948c23a624834fee2e4 587 Pfam PF13439 Glycosyltransferase Family 4 13 159 1.6E-24 T 17-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 VI35_20575 5aa9900fd5295948c23a624834fee2e4 587 Gene3D G3DSA:3.40.50.2000 165 281 9.5E-7 T 17-10-2018 VI35_20575 5aa9900fd5295948c23a624834fee2e4 587 SUPERFAMILY SSF53756 1 269 8.48E-37 T 17-10-2018 VI35_16560 c4ffa2883b5e39d2431d4eda9ce60566 323 Pfam PF00348 Polyprenyl synthetase 32 266 2.1E-78 T 17-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 VI35_16560 c4ffa2883b5e39d2431d4eda9ce60566 323 SUPERFAMILY SSF48576 6 322 8.96E-103 T 17-10-2018 IPR008949 Isoprenoid synthase domain superfamily VI35_16560 c4ffa2883b5e39d2431d4eda9ce60566 323 Gene3D G3DSA:1.10.600.10 1 323 8.0E-119 T 17-10-2018 IPR008949 Isoprenoid synthase domain superfamily VI35_16560 c4ffa2883b5e39d2431d4eda9ce60566 323 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 81 95 - T 17-10-2018 IPR033749 Polyprenyl synthetase, conserved site VI35_16560 c4ffa2883b5e39d2431d4eda9ce60566 323 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 203 215 - T 17-10-2018 IPR033749 Polyprenyl synthetase, conserved site VI35_00700 00a5a6aef0c63662c1f235d8168939df 446 Pfam PF09940 Domain of unknown function (DUF2172) 77 168 2.9E-38 T 17-10-2018 IPR032610 Domain of unknown function DUF2172 VI35_00700 00a5a6aef0c63662c1f235d8168939df 446 Gene3D G3DSA:3.40.630.10 29 351 3.1E-126 T 17-10-2018 VI35_00700 00a5a6aef0c63662c1f235d8168939df 446 Pfam PF16221 winged helix-turn-helix 369 441 4.8E-25 T 17-10-2018 IPR032622 UCP01524, winged helix-turn-helix domain VI35_00700 00a5a6aef0c63662c1f235d8168939df 446 Gene3D G3DSA:3.50.30.90 75 171 3.1E-126 T 17-10-2018 VI35_00700 00a5a6aef0c63662c1f235d8168939df 446 Gene3D G3DSA:1.10.10.10 366 442 1.2E-15 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_00700 00a5a6aef0c63662c1f235d8168939df 446 Pfam PF16254 Domain of unknown function (DUF4910) 25 365 1.7E-92 T 17-10-2018 IPR032589 Domain of unknown function DUF4910 VI35_00700 00a5a6aef0c63662c1f235d8168939df 446 SUPERFAMILY SSF53187 101 364 1.07E-30 T 17-10-2018 VI35_00700 00a5a6aef0c63662c1f235d8168939df 446 PIRSF PIRSF015244 6 443 1.6E-156 T 17-10-2018 IPR012353 Uncharacterised conserved protein UCP01524, polysaccharide biosynthesis aminopeptidase-like VI35_03675 8cf70d5c602c8f0e487f1b80a13cccf9 817 Pfam PF04408 Helicase associated domain (HA2) 388 452 1.4E-12 T 17-10-2018 IPR007502 Helicase-associated domain GO:0004386 VI35_03675 8cf70d5c602c8f0e487f1b80a13cccf9 817 SMART SM00847 387 498 1.7E-12 T 17-10-2018 IPR007502 Helicase-associated domain GO:0004386 VI35_03675 8cf70d5c602c8f0e487f1b80a13cccf9 817 Gene3D G3DSA:3.40.50.300 1 179 3.2E-49 T 17-10-2018 VI35_03675 8cf70d5c602c8f0e487f1b80a13cccf9 817 Gene3D G3DSA:1.20.120.1080 370 459 1.6E-9 T 17-10-2018 VI35_03675 8cf70d5c602c8f0e487f1b80a13cccf9 817 TIGRFAM TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB 4 812 0.0 T 17-10-2018 IPR010225 ATP-dependent helicase HrpB GO:0008026 VI35_03675 8cf70d5c602c8f0e487f1b80a13cccf9 817 Pfam PF00271 Helicase conserved C-terminal domain 209 328 1.7E-12 T 17-10-2018 IPR001650 Helicase, C-terminal VI35_03675 8cf70d5c602c8f0e487f1b80a13cccf9 817 SMART SM00487 2 186 5.8E-16 T 17-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VI35_03675 8cf70d5c602c8f0e487f1b80a13cccf9 817 Pfam PF00270 DEAD/DEAH box helicase 19 162 2.1E-7 T 17-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VI35_03675 8cf70d5c602c8f0e487f1b80a13cccf9 817 SMART SM00490 226 328 1.6E-19 T 17-10-2018 IPR001650 Helicase, C-terminal VI35_03675 8cf70d5c602c8f0e487f1b80a13cccf9 817 Pfam PF08482 ATP-dependent helicase C-terminal 668 800 4.9E-52 T 17-10-2018 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal VI35_03675 8cf70d5c602c8f0e487f1b80a13cccf9 817 Gene3D G3DSA:3.40.50.300 180 348 3.3E-52 T 17-10-2018 VI35_03675 8cf70d5c602c8f0e487f1b80a13cccf9 817 PIRSF PIRSF005496 1 814 5.5E-299 T 17-10-2018 VI35_03675 8cf70d5c602c8f0e487f1b80a13cccf9 817 SUPERFAMILY SSF52540 16 339 6.75E-48 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_03505 96708197e3ca3be2350dc51840c23a51 151 Gene3D G3DSA:2.40.50.140 87 151 9.7E-7 T 17-10-2018 VI35_03505 96708197e3ca3be2350dc51840c23a51 151 Pfam PF01957 NfeD-like C-terminal, partner-binding 12 149 1.2E-27 T 17-10-2018 IPR002810 NfeD-like, C-terminal domain VI35_10480 9dbac9986cafa886b7c62d85a51d0def 1072 SUPERFAMILY SSF141072 952 1063 1.44E-17 T 17-10-2018 IPR038081 CalX-like domain superfamily VI35_10480 9dbac9986cafa886b7c62d85a51d0def 1072 Pfam PF03160 Calx-beta domain 842 927 2.9E-7 T 17-10-2018 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 VI35_10480 9dbac9986cafa886b7c62d85a51d0def 1072 Pfam PF03160 Calx-beta domain 942 1041 2.1E-6 T 17-10-2018 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 VI35_10480 9dbac9986cafa886b7c62d85a51d0def 1072 SUPERFAMILY SSF56219 475 833 2.16E-31 T 17-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily VI35_10480 9dbac9986cafa886b7c62d85a51d0def 1072 SUPERFAMILY SSF141072 840 948 2.62E-23 T 17-10-2018 IPR038081 CalX-like domain superfamily VI35_10480 9dbac9986cafa886b7c62d85a51d0def 1072 Gene3D G3DSA:2.60.40.2030 952 1064 1.7E-12 T 17-10-2018 IPR038081 CalX-like domain superfamily VI35_10480 9dbac9986cafa886b7c62d85a51d0def 1072 SMART SM00237 830 928 2.5E-12 T 17-10-2018 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 VI35_10480 9dbac9986cafa886b7c62d85a51d0def 1072 SMART SM00237 941 1042 3.3E-28 T 17-10-2018 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 VI35_10480 9dbac9986cafa886b7c62d85a51d0def 1072 Gene3D G3DSA:2.60.40.2030 839 950 4.3E-20 T 17-10-2018 IPR038081 CalX-like domain superfamily VI35_10480 9dbac9986cafa886b7c62d85a51d0def 1072 Pfam PF00932 Lamin Tail Domain 19 130 5.4E-14 T 17-10-2018 IPR001322 Lamin tail domain VI35_12000 724bb1047f791c49c9cf8aee903d23f7 187 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 4 180 2.2E-50 T 17-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 VI35_12000 724bb1047f791c49c9cf8aee903d23f7 187 SUPERFAMILY SSF89028 1 181 1.06E-54 T 17-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 VI35_12000 724bb1047f791c49c9cf8aee903d23f7 187 Gene3D G3DSA:1.20.1200.10 12 186 6.3E-54 T 17-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 VI35_12000 724bb1047f791c49c9cf8aee903d23f7 187 Pfam PF01923 Cobalamin adenosyltransferase 3 168 6.6E-53 T 17-10-2018 IPR016030 Cobalamin adenosyltransferase-like KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 VI35_12000 724bb1047f791c49c9cf8aee903d23f7 187 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 9 180 3.0E-26 T 17-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 VI35_15000 4a23b62ed99f42ddd43facf9da300b7c 416 Gene3D G3DSA:1.25.40.10 151 218 1.2E-13 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_15000 4a23b62ed99f42ddd43facf9da300b7c 416 Pfam PF14559 Tetratricopeptide repeat 189 257 3.8E-8 T 17-10-2018 VI35_15000 4a23b62ed99f42ddd43facf9da300b7c 416 Gene3D G3DSA:1.25.40.10 219 327 1.6E-15 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_15000 4a23b62ed99f42ddd43facf9da300b7c 416 Pfam PF13181 Tetratricopeptide repeat 152 174 0.019 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_15000 4a23b62ed99f42ddd43facf9da300b7c 416 Pfam PF13181 Tetratricopeptide repeat 106 140 0.0015 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_15000 4a23b62ed99f42ddd43facf9da300b7c 416 SMART SM00386 156 188 180.0 T 17-10-2018 IPR003107 HAT (Half-A-TPR) repeat GO:0006396 VI35_15000 4a23b62ed99f42ddd43facf9da300b7c 416 SMART SM00386 226 258 10.0 T 17-10-2018 IPR003107 HAT (Half-A-TPR) repeat GO:0006396 VI35_15000 4a23b62ed99f42ddd43facf9da300b7c 416 SMART SM00386 191 223 82.0 T 17-10-2018 IPR003107 HAT (Half-A-TPR) repeat GO:0006396 VI35_15000 4a23b62ed99f42ddd43facf9da300b7c 416 SMART SM00386 261 293 44.0 T 17-10-2018 IPR003107 HAT (Half-A-TPR) repeat GO:0006396 VI35_15000 4a23b62ed99f42ddd43facf9da300b7c 416 SMART SM00386 121 153 150.0 T 17-10-2018 IPR003107 HAT (Half-A-TPR) repeat GO:0006396 VI35_15000 4a23b62ed99f42ddd43facf9da300b7c 416 SMART SM00386 86 118 0.0085 T 17-10-2018 IPR003107 HAT (Half-A-TPR) repeat GO:0006396 VI35_15000 4a23b62ed99f42ddd43facf9da300b7c 416 Gene3D G3DSA:1.25.40.10 52 150 5.7E-10 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_15000 4a23b62ed99f42ddd43facf9da300b7c 416 SMART SM00028 247 280 43.0 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_15000 4a23b62ed99f42ddd43facf9da300b7c 416 SMART SM00028 75 105 450.0 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_15000 4a23b62ed99f42ddd43facf9da300b7c 416 SMART SM00028 106 140 11.0 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_15000 4a23b62ed99f42ddd43facf9da300b7c 416 SMART SM00028 212 245 2.0 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_15000 4a23b62ed99f42ddd43facf9da300b7c 416 SMART SM00028 145 175 130.0 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_15000 4a23b62ed99f42ddd43facf9da300b7c 416 SMART SM00028 177 210 33.0 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_15000 4a23b62ed99f42ddd43facf9da300b7c 416 SUPERFAMILY SSF48452 76 315 2.84E-26 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_15000 4a23b62ed99f42ddd43facf9da300b7c 416 Pfam PF13431 Tetratricopeptide repeat 269 302 1.1E-4 T 17-10-2018 VI35_08615 42fa5837c1798261d248a8285b349480 637 SMART SM00387 30 187 8.2E-9 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_08615 42fa5837c1798261d248a8285b349480 637 Gene3D G3DSA:1.20.120.790 503 636 1.5E-45 T 17-10-2018 IPR037196 HSP90, C-terminal domain VI35_08615 42fa5837c1798261d248a8285b349480 637 Gene3D G3DSA:3.30.565.10 1 231 6.2E-78 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_08615 42fa5837c1798261d248a8285b349480 637 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 28 37 - T 17-10-2018 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0051082 VI35_08615 42fa5837c1798261d248a8285b349480 637 SUPERFAMILY SSF110942 523 635 1.7E-37 T 17-10-2018 IPR037196 HSP90, C-terminal domain VI35_08615 42fa5837c1798261d248a8285b349480 637 Pfam PF00183 Hsp90 protein 227 635 4.1E-134 T 17-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 VI35_08615 42fa5837c1798261d248a8285b349480 637 SUPERFAMILY SSF54211 241 496 1.97E-101 T 17-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VI35_08615 42fa5837c1798261d248a8285b349480 637 Hamap MF_00505 Chaperone protein HtpG [htpG]. 5 635 32.765 T 17-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 VI35_08615 42fa5837c1798261d248a8285b349480 637 PRINTS PR00775 90kDa heat shock protein signature 78 95 5.4E-62 T 17-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal VI35_08615 42fa5837c1798261d248a8285b349480 637 PRINTS PR00775 90kDa heat shock protein signature 96 113 5.4E-62 T 17-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal VI35_08615 42fa5837c1798261d248a8285b349480 637 PRINTS PR00775 90kDa heat shock protein signature 193 211 5.4E-62 T 17-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal VI35_08615 42fa5837c1798261d248a8285b349480 637 PRINTS PR00775 90kDa heat shock protein signature 123 145 5.4E-62 T 17-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal VI35_08615 42fa5837c1798261d248a8285b349480 637 PRINTS PR00775 90kDa heat shock protein signature 29 51 5.4E-62 T 17-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal VI35_08615 42fa5837c1798261d248a8285b349480 637 PRINTS PR00775 90kDa heat shock protein signature 175 192 5.4E-62 T 17-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal VI35_08615 42fa5837c1798261d248a8285b349480 637 PRINTS PR00775 90kDa heat shock protein signature 8 28 5.4E-62 T 17-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal VI35_08615 42fa5837c1798261d248a8285b349480 637 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 30 186 4.8E-14 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_08615 42fa5837c1798261d248a8285b349480 637 SUPERFAMILY SSF55874 7 217 1.83E-66 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_08615 42fa5837c1798261d248a8285b349480 637 Gene3D G3DSA:3.40.50.11260 408 497 1.4E-34 T 17-10-2018 VI35_08615 42fa5837c1798261d248a8285b349480 637 PIRSF PIRSF002583 2 637 3.9E-221 T 17-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 VI35_08615 42fa5837c1798261d248a8285b349480 637 Gene3D G3DSA:3.30.230.80 240 407 2.1E-71 T 17-10-2018 VI35_05890 b00ff9c78b1702c9bd295321aae0ef47 267 PRINTS PR01003 Flagellar assembly protein FliH signature 113 131 6.4E-13 T 17-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 VI35_05890 b00ff9c78b1702c9bd295321aae0ef47 267 PRINTS PR01003 Flagellar assembly protein FliH signature 90 112 6.4E-13 T 17-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 VI35_05890 b00ff9c78b1702c9bd295321aae0ef47 267 PRINTS PR01003 Flagellar assembly protein FliH signature 222 238 6.4E-13 T 17-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 VI35_05890 b00ff9c78b1702c9bd295321aae0ef47 267 PRINTS PR01003 Flagellar assembly protein FliH signature 132 151 6.4E-13 T 17-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 VI35_05890 b00ff9c78b1702c9bd295321aae0ef47 267 PRINTS PR01003 Flagellar assembly protein FliH signature 152 169 6.4E-13 T 17-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 VI35_05890 b00ff9c78b1702c9bd295321aae0ef47 267 Pfam PF02108 Flagellar assembly protein FliH 131 257 1.2E-28 T 17-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE VI35_15585 bf0e0acbb2100e6ddac8a31bb09515b3 146 SUPERFAMILY SSF52218 1 146 6.91E-36 T 17-10-2018 IPR029039 Flavoprotein-like superfamily VI35_15585 bf0e0acbb2100e6ddac8a31bb09515b3 146 Pfam PF00258 Flavodoxin 6 138 4.0E-24 T 17-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 VI35_15585 bf0e0acbb2100e6ddac8a31bb09515b3 146 Gene3D G3DSA:3.40.50.360 1 146 4.6E-43 T 17-10-2018 IPR029039 Flavoprotein-like superfamily VI35_19175 46f66e2be3a836abe13cd5edb35df610 204 SUPERFAMILY SSF56925 24 204 1.57E-11 T 17-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VI35_19175 46f66e2be3a836abe13cd5edb35df610 204 Gene3D G3DSA:2.40.160.20 24 204 2.7E-10 T 17-10-2018 VI35_19175 46f66e2be3a836abe13cd5edb35df610 204 Pfam PF13505 Outer membrane protein beta-barrel domain 23 171 2.2E-8 T 17-10-2018 IPR027385 Outer membrane protein beta-barrel VI35_08545 eac3c7516b081251dd82012d98a9f9e8 539 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 85 442 2.1E-71 T 17-10-2018 IPR000914 Solute-binding protein family 5 domain VI35_08545 eac3c7516b081251dd82012d98a9f9e8 539 Gene3D G3DSA:3.40.190.10 56 522 6.8E-166 T 17-10-2018 VI35_08545 eac3c7516b081251dd82012d98a9f9e8 539 PIRSF PIRSF002741 47 525 5.2E-67 T 17-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 VI35_08545 eac3c7516b081251dd82012d98a9f9e8 539 SUPERFAMILY SSF53850 45 512 6.88E-89 T 17-10-2018 VI35_08545 eac3c7516b081251dd82012d98a9f9e8 539 Gene3D G3DSA:3.10.105.10 264 510 6.8E-166 T 17-10-2018 VI35_20925 faad24e0d288de2b87692a19c0395d67 421 Gene3D G3DSA:2.40.50.140 48 117 1.0E-34 T 17-10-2018 VI35_20925 faad24e0d288de2b87692a19c0395d67 421 Gene3D G3DSA:1.10.720.10 1 47 6.0E-21 T 17-10-2018 VI35_20925 faad24e0d288de2b87692a19c0395d67 421 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 419 251.215 T 17-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 VI35_20925 faad24e0d288de2b87692a19c0395d67 421 SMART SM00959 5 47 2.0E-14 T 17-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 VI35_20925 faad24e0d288de2b87692a19c0395d67 421 SMART SM00357 52 118 2.9E-18 T 17-10-2018 IPR011129 Cold shock domain GO:0003676 VI35_20925 faad24e0d288de2b87692a19c0395d67 421 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 160 363 7.3E-23 T 17-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VI35_20925 faad24e0d288de2b87692a19c0395d67 421 Pfam PF07498 Rho termination factor, N-terminal domain 5 47 1.6E-14 T 17-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 VI35_20925 faad24e0d288de2b87692a19c0395d67 421 SUPERFAMILY SSF68912 1 46 1.57E-10 T 17-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily VI35_20925 faad24e0d288de2b87692a19c0395d67 421 TIGRFAM TIGR00767 rho: transcription termination factor Rho 2 417 1.5E-219 T 17-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 VI35_20925 faad24e0d288de2b87692a19c0395d67 421 SUPERFAMILY SSF52540 90 371 1.17E-68 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_20925 faad24e0d288de2b87692a19c0395d67 421 SMART SM00382 170 356 1.1E-7 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_20925 faad24e0d288de2b87692a19c0395d67 421 Gene3D G3DSA:3.40.50.300 130 417 4.3E-134 T 17-10-2018 VI35_20925 faad24e0d288de2b87692a19c0395d67 421 Pfam PF07497 Rho termination factor, RNA-binding domain 52 125 1.3E-31 T 17-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 VI35_20925 faad24e0d288de2b87692a19c0395d67 421 SUPERFAMILY SSF50249 48 125 4.28E-29 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_19775 261a319fc0806c4d56705cdba7ca7aa6 129 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 10 126 1.5E-55 T 17-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_19775 261a319fc0806c4d56705cdba7ca7aa6 129 Gene3D G3DSA:3.30.420.80 1 129 6.9E-58 T 17-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 VI35_19775 261a319fc0806c4d56705cdba7ca7aa6 129 PIRSF PIRSF002131 1 129 4.7E-53 T 17-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 VI35_19775 261a319fc0806c4d56705cdba7ca7aa6 129 Pfam PF00411 Ribosomal protein S11 19 128 1.8E-52 T 17-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 VI35_19775 261a319fc0806c4d56705cdba7ca7aa6 129 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 129 32.73 T 17-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 VI35_19775 261a319fc0806c4d56705cdba7ca7aa6 129 ProSitePatterns PS00054 Ribosomal protein S11 signature. 97 119 - T 17-10-2018 IPR018102 Ribosomal S11, conserved site VI35_19775 261a319fc0806c4d56705cdba7ca7aa6 129 SUPERFAMILY SSF53137 15 129 8.28E-48 T 17-10-2018 VI35_20870 f401bd05c2e4a7cd1a8a8cfc10711035 233 ProDom PD036408 PAPJ PRECURSOR CHAPERONE SIGNAL PERIPLASMIC PIXJ PRSJ PLASMID PRFJ PILUS 106 166 0.007 T 17-10-2018 IPR029224 Pilus-assembly complex, chaperone PapJ VI35_20870 f401bd05c2e4a7cd1a8a8cfc10711035 233 Gene3D G3DSA:3.40.50.300 1 233 8.6E-68 T 17-10-2018 VI35_20870 f401bd05c2e4a7cd1a8a8cfc10711035 233 Pfam PF00005 ABC transporter 17 161 7.4E-34 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_20870 f401bd05c2e4a7cd1a8a8cfc10711035 233 SUPERFAMILY SSF52540 1 231 2.44E-63 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_20870 f401bd05c2e4a7cd1a8a8cfc10711035 233 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_20870 f401bd05c2e4a7cd1a8a8cfc10711035 233 SMART SM00382 26 212 7.5E-7 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_20870 f401bd05c2e4a7cd1a8a8cfc10711035 233 PIRSF PIRSF039137 1 233 1.5E-104 T 17-10-2018 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 VI35_09660 e75cdd07347f31b33e0b94630efd00b8 484 Gene3D G3DSA:3.30.1360.60 1 79 4.6E-23 T 17-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VI35_09660 e75cdd07347f31b33e0b94630efd00b8 484 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 21 38 - T 17-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VI35_09660 e75cdd07347f31b33e0b94630efd00b8 484 Pfam PF02378 Phosphotransferase system, EIIC 114 397 1.1E-40 T 17-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 VI35_09660 e75cdd07347f31b33e0b94630efd00b8 484 SUPERFAMILY SSF55604 9 81 1.57E-20 T 17-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VI35_09660 e75cdd07347f31b33e0b94630efd00b8 484 Pfam PF00367 phosphotransferase system, EIIB 12 43 8.6E-14 T 17-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VI35_06745 8b1b3ba30b088e4cba029ab61c750e65 505 SMART SM00471 320 457 6.1E-9 T 17-10-2018 IPR003607 HD/PDEase domain VI35_06745 8b1b3ba30b088e4cba029ab61c750e65 505 SUPERFAMILY SSF109604 316 488 4.08E-40 T 17-10-2018 VI35_06745 8b1b3ba30b088e4cba029ab61c750e65 505 SUPERFAMILY SSF52172 22 178 2.56E-11 T 17-10-2018 IPR011006 CheY-like superfamily VI35_06745 8b1b3ba30b088e4cba029ab61c750e65 505 Gene3D G3DSA:3.40.50.2300 23 178 1.4E-12 T 17-10-2018 VI35_06745 8b1b3ba30b088e4cba029ab61c750e65 505 Gene3D G3DSA:1.10.3210.10 301 501 1.1E-71 T 17-10-2018 VI35_06745 8b1b3ba30b088e4cba029ab61c750e65 505 Pfam PF13487 HD domain 375 438 1.8E-19 T 17-10-2018 VI35_06745 8b1b3ba30b088e4cba029ab61c750e65 505 Pfam PF11849 Domain of unknown function (DUF3369) 146 301 1.5E-33 T 17-10-2018 IPR021800 Domain of unknown function DUF3369 VI35_20145 1a2a40f5953360117017d911ca50fa95 314 SUPERFAMILY SSF50486 207 309 4.71E-36 T 17-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 VI35_20145 1a2a40f5953360117017d911ca50fa95 314 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 4 306 37.339 T 17-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 VI35_20145 1a2a40f5953360117017d911ca50fa95 314 Pfam PF02911 Formyl transferase, C-terminal domain 206 303 1.6E-31 T 17-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 VI35_20145 1a2a40f5953360117017d911ca50fa95 314 Gene3D G3DSA:3.10.25.10 209 313 1.1E-37 T 17-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 VI35_20145 1a2a40f5953360117017d911ca50fa95 314 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 135 158 - T 17-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 VI35_20145 1a2a40f5953360117017d911ca50fa95 314 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 5 310 4.5E-106 T 17-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 VI35_20145 1a2a40f5953360117017d911ca50fa95 314 Gene3D G3DSA:3.40.50.170 1 208 2.4E-84 T 17-10-2018 VI35_20145 1a2a40f5953360117017d911ca50fa95 314 Pfam PF00551 Formyl transferase 7 182 9.5E-51 T 17-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 VI35_20145 1a2a40f5953360117017d911ca50fa95 314 SUPERFAMILY SSF53328 3 206 8.11E-68 T 17-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 VI35_09505 881d586ac513c4339728f4b6e28f9795 364 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_09505 881d586ac513c4339728f4b6e28f9795 364 Pfam PF00005 ABC transporter 21 163 1.1E-32 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_09505 881d586ac513c4339728f4b6e28f9795 364 Gene3D G3DSA:2.40.50.140 280 330 4.1E-13 T 17-10-2018 VI35_09505 881d586ac513c4339728f4b6e28f9795 364 Gene3D G3DSA:3.40.50.300 5 223 4.4E-70 T 17-10-2018 VI35_09505 881d586ac513c4339728f4b6e28f9795 364 TIGRFAM TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein 3 357 1.5E-146 T 17-10-2018 IPR017666 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT2 GO:0005524 VI35_09505 881d586ac513c4339728f4b6e28f9795 364 SMART SM00382 30 213 1.1E-19 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_09505 881d586ac513c4339728f4b6e28f9795 364 Pfam PF08402 TOBE domain 273 359 1.5E-8 T 17-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 VI35_09505 881d586ac513c4339728f4b6e28f9795 364 SUPERFAMILY SSF50331 239 362 1.14E-12 T 17-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal VI35_09505 881d586ac513c4339728f4b6e28f9795 364 SUPERFAMILY SSF52540 6 243 3.14E-87 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_09505 881d586ac513c4339728f4b6e28f9795 364 Gene3D G3DSA:2.40.50.940 224 279 4.1E-13 T 17-10-2018 VI35_10150 a18d791ccbc42713fc4b7eda30311b70 285 Hamap MF_00152 Probable endonuclease 4 [nfo]. 2 279 42.238 T 17-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 VI35_10150 a18d791ccbc42713fc4b7eda30311b70 285 SUPERFAMILY SSF51658 1 279 7.46E-101 T 17-10-2018 IPR036237 Xylose isomerase-like superfamily VI35_10150 a18d791ccbc42713fc4b7eda30311b70 285 Gene3D G3DSA:3.20.20.150 1 280 8.7E-111 T 17-10-2018 VI35_10150 a18d791ccbc42713fc4b7eda30311b70 285 Pfam PF01261 Xylose isomerase-like TIM barrel 19 238 1.7E-39 T 17-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain VI35_10150 a18d791ccbc42713fc4b7eda30311b70 285 ProSitePatterns PS00730 AP endonucleases family 2 signature 2. 175 182 - T 17-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 VI35_10150 a18d791ccbc42713fc4b7eda30311b70 285 ProSitePatterns PS00729 AP endonucleases family 2 signature 1. 69 77 - T 17-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 VI35_10150 a18d791ccbc42713fc4b7eda30311b70 285 ProSitePatterns PS00731 AP endonucleases family 2 signature 3. 215 231 - T 17-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 VI35_10150 a18d791ccbc42713fc4b7eda30311b70 285 SMART SM00518 3 279 4.8E-120 T 17-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 VI35_10150 a18d791ccbc42713fc4b7eda30311b70 285 TIGRFAM TIGR00587 nfo: apurinic endonuclease (APN1) 3 276 1.1E-102 T 17-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 VI35_02280 5110ab85a986d2304b5741eb7801ad15 301 SUPERFAMILY SSF51261 158 296 2.09E-52 T 17-10-2018 IPR011055 Duplicated hybrid motif VI35_02280 5110ab85a986d2304b5741eb7801ad15 301 Gene3D G3DSA:2.70.70.10 136 300 1.2E-43 T 17-10-2018 IPR011055 Duplicated hybrid motif VI35_02280 5110ab85a986d2304b5741eb7801ad15 301 Pfam PF01551 Peptidase family M23 198 292 5.1E-30 T 17-10-2018 IPR016047 Peptidase M23 VI35_15355 04e1e66316c1087f47714e4627063cb5 255 SUPERFAMILY SSF53850 27 252 4.35E-41 T 17-10-2018 VI35_15355 04e1e66316c1087f47714e4627063cb5 255 Gene3D G3DSA:3.40.190.10 113 211 5.4E-29 T 17-10-2018 VI35_15355 04e1e66316c1087f47714e4627063cb5 255 Gene3D G3DSA:3.40.190.10 32 250 5.4E-29 T 17-10-2018 VI35_15355 04e1e66316c1087f47714e4627063cb5 255 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 27 251 6.2E-27 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_15355 04e1e66316c1087f47714e4627063cb5 255 SMART SM00062 26 255 5.8E-4 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_05410 4c4a3bc28d1fa4a5d2455005f283ea31 221 Gene3D G3DSA:1.10.150.240 23 90 4.9E-65 T 17-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 VI35_05410 4c4a3bc28d1fa4a5d2455005f283ea31 221 Pfam PF13419 Haloacid dehalogenase-like hydrolase 11 190 1.9E-35 T 17-10-2018 VI35_05410 4c4a3bc28d1fa4a5d2455005f283ea31 221 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 107 185 4.5E-10 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_05410 4c4a3bc28d1fa4a5d2455005f283ea31 221 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 11 220 4.0E-69 T 17-10-2018 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic GO:0016791 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 VI35_05410 4c4a3bc28d1fa4a5d2455005f283ea31 221 SUPERFAMILY SSF56784 7 220 6.24E-63 T 17-10-2018 IPR036412 HAD-like superfamily VI35_05410 4c4a3bc28d1fa4a5d2455005f283ea31 221 Gene3D G3DSA:3.40.50.1000 11 213 4.9E-65 T 17-10-2018 IPR023214 HAD superfamily VI35_05410 4c4a3bc28d1fa4a5d2455005f283ea31 221 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 11 190 4.1E-12 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_05410 4c4a3bc28d1fa4a5d2455005f283ea31 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 135 151 4.9E-5 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_05410 4c4a3bc28d1fa4a5d2455005f283ea31 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 153 173 4.9E-5 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_05410 4c4a3bc28d1fa4a5d2455005f283ea31 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 8 19 4.9E-5 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_05410 4c4a3bc28d1fa4a5d2455005f283ea31 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 104 117 4.9E-5 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_05410 4c4a3bc28d1fa4a5d2455005f283ea31 221 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 92 190 6.0E-13 T 17-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 VI35_05410 4c4a3bc28d1fa4a5d2455005f283ea31 221 Hamap MF_00495 Phosphoglycolate phosphatase [gph]. 8 221 34.511 T 17-10-2018 IPR037512 Phosphoglycolate phosphatase, prokaryotic GO:0005975|GO:0008967 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 VI35_10040 00b92d99a5cb4314c4c44a6d791a3fd5 306 Gene3D G3DSA:3.40.50.720 1 170 1.4E-54 T 17-10-2018 VI35_10040 00b92d99a5cb4314c4c44a6d791a3fd5 306 SUPERFAMILY SSF48179 171 301 4.65E-41 T 17-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VI35_10040 00b92d99a5cb4314c4c44a6d791a3fd5 306 SUPERFAMILY SSF51735 3 169 1.89E-44 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_10040 00b92d99a5cb4314c4c44a6d791a3fd5 306 TIGRFAM TIGR01692 HIBADH: 3-hydroxyisobutyrate dehydrogenase 6 300 6.4E-124 T 17-10-2018 IPR011548 3-hydroxyisobutyrate dehydrogenase GO:0008442|GO:0051287|GO:0055114 KEGG: 00280+1.1.1.31|Reactome: R-HSA-70895 VI35_10040 00b92d99a5cb4314c4c44a6d791a3fd5 306 PIRSF PIRSF000103 1 306 7.3E-79 T 17-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 VI35_10040 00b92d99a5cb4314c4c44a6d791a3fd5 306 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 169 9.5E-51 T 17-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 VI35_10040 00b92d99a5cb4314c4c44a6d791a3fd5 306 Gene3D G3DSA:1.10.1040.10 172 304 6.7E-46 T 17-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 VI35_10040 00b92d99a5cb4314c4c44a6d791a3fd5 306 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 172 299 8.4E-36 T 17-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 VI35_10040 00b92d99a5cb4314c4c44a6d791a3fd5 306 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 6 19 - T 17-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 VI35_20115 8ad26ee3cb6fffb617eb2867b25fa79c 186 SUPERFAMILY SSF55821 3 183 2.81E-53 T 17-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily VI35_20115 8ad26ee3cb6fffb617eb2867b25fa79c 186 Pfam PF01300 Telomere recombination 11 184 4.3E-42 T 17-10-2018 IPR006070 YrdC-like domain GO:0003725 VI35_20115 8ad26ee3cb6fffb617eb2867b25fa79c 186 Gene3D G3DSA:3.90.870.10 2 184 2.1E-58 T 17-10-2018 VI35_20115 8ad26ee3cb6fffb617eb2867b25fa79c 186 Hamap MF_01852 Threonylcarbamoyl-AMP synthase [tsaC]. 2 184 40.422 T 17-10-2018 IPR023535 Threonylcarbamoyl-AMP synthase GO:0002949|GO:0005524 VI35_14005 f5b8d21fecb97c251e69fd58d8b2e145 230 SUPERFAMILY SSF46785 5 84 4.72E-17 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_14005 f5b8d21fecb97c251e69fd58d8b2e145 230 Gene3D G3DSA:1.10.10.10 4 84 3.8E-14 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_14005 f5b8d21fecb97c251e69fd58d8b2e145 230 Pfam PF04079 Segregation and condensation complex subunit ScpB 11 171 1.7E-52 T 17-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 VI35_14005 f5b8d21fecb97c251e69fd58d8b2e145 230 Gene3D G3DSA:1.10.10.10 85 178 3.4E-32 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_14005 f5b8d21fecb97c251e69fd58d8b2e145 230 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 7 172 5.8E-35 T 17-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 VI35_14005 f5b8d21fecb97c251e69fd58d8b2e145 230 SUPERFAMILY SSF46785 87 162 2.72E-23 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_05685 8cb0dda57e9e7de3e41ccdb97e4c4f1b 383 Pfam PF02772 S-adenosylmethionine synthetase, central domain 113 231 5.9E-42 T 17-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 VI35_05685 8cb0dda57e9e7de3e41ccdb97e4c4f1b 383 SUPERFAMILY SSF55973 3 108 1.61E-48 T 17-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 VI35_05685 8cb0dda57e9e7de3e41ccdb97e4c4f1b 383 Gene3D G3DSA:3.30.300.10 4 233 2.7E-178 T 17-10-2018 VI35_05685 8cb0dda57e9e7de3e41ccdb97e4c4f1b 383 SUPERFAMILY SSF55973 233 381 1.02E-71 T 17-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 VI35_05685 8cb0dda57e9e7de3e41ccdb97e4c4f1b 383 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 4 380 8.9E-194 T 17-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 VI35_05685 8cb0dda57e9e7de3e41ccdb97e4c4f1b 383 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 259 267 - T 17-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 VI35_05685 8cb0dda57e9e7de3e41ccdb97e4c4f1b 383 PIRSF PIRSF000497 1 382 8.2E-174 T 17-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 VI35_05685 8cb0dda57e9e7de3e41ccdb97e4c4f1b 383 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 1 381 58.553 T 17-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 VI35_05685 8cb0dda57e9e7de3e41ccdb97e4c4f1b 383 Gene3D G3DSA:3.30.300.10 10 270 2.7E-178 T 17-10-2018 VI35_05685 8cb0dda57e9e7de3e41ccdb97e4c4f1b 383 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 233 370 5.6E-70 T 17-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 VI35_05685 8cb0dda57e9e7de3e41ccdb97e4c4f1b 383 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 3 100 1.6E-44 T 17-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 VI35_05685 8cb0dda57e9e7de3e41ccdb97e4c4f1b 383 Gene3D G3DSA:3.30.300.10 101 373 2.7E-178 T 17-10-2018 VI35_05685 8cb0dda57e9e7de3e41ccdb97e4c4f1b 383 SUPERFAMILY SSF55973 111 232 2.75E-48 T 17-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 VI35_05685 8cb0dda57e9e7de3e41ccdb97e4c4f1b 383 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 115 125 - T 17-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 VI35_06835 ceb49733b1d70b7684e03fac54ddc7ff 151 SUPERFAMILY SSF48695 35 147 1.08E-40 T 17-10-2018 IPR036280 Multiheme cytochrome superfamily VI35_06835 ceb49733b1d70b7684e03fac54ddc7ff 151 PIRSF PIRSF006105 1 151 1.4E-47 T 17-10-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB VI35_06835 ceb49733b1d70b7684e03fac54ddc7ff 151 Gene3D G3DSA:1.10.1130.10 65 132 9.7E-27 T 17-10-2018 VI35_06835 ceb49733b1d70b7684e03fac54ddc7ff 151 Pfam PF03892 Nitrate reductase cytochrome c-type subunit (NapB) 28 146 1.8E-46 T 17-10-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB VI35_20605 b9c6fdc254d528bdb19b3be3c367eefa 767 Pfam PF00563 EAL domain 506 742 1.6E-70 T 17-10-2018 IPR001633 EAL domain VI35_20605 b9c6fdc254d528bdb19b3be3c367eefa 767 Gene3D G3DSA:3.30.70.270 325 505 1.1E-59 T 17-10-2018 VI35_20605 b9c6fdc254d528bdb19b3be3c367eefa 767 SMART SM00267 320 493 1.3E-64 T 17-10-2018 IPR000160 GGDEF domain VI35_20605 b9c6fdc254d528bdb19b3be3c367eefa 767 Gene3D G3DSA:3.20.20.450 506 763 2.5E-75 T 17-10-2018 IPR035919 EAL domain superfamily VI35_20605 b9c6fdc254d528bdb19b3be3c367eefa 767 SUPERFAMILY SSF55073 336 495 6.28E-49 T 17-10-2018 IPR029787 Nucleotide cyclase VI35_20605 b9c6fdc254d528bdb19b3be3c367eefa 767 SMART SM00052 500 747 1.0E-72 T 17-10-2018 IPR001633 EAL domain VI35_20605 b9c6fdc254d528bdb19b3be3c367eefa 767 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 327 492 3.2E-45 T 17-10-2018 IPR000160 GGDEF domain VI35_20605 b9c6fdc254d528bdb19b3be3c367eefa 767 SUPERFAMILY SSF141868 505 753 5.1E-70 T 17-10-2018 IPR035919 EAL domain superfamily VI35_20605 b9c6fdc254d528bdb19b3be3c367eefa 767 Pfam PF00990 Diguanylate cyclase, GGDEF domain 331 489 8.1E-50 T 17-10-2018 IPR000160 GGDEF domain VI35_08205 948ea5904e4cb9ee5ed591942eb407ec 808 Pfam PF02687 FtsX-like permease family 718 807 1.2E-9 T 17-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 VI35_08205 948ea5904e4cb9ee5ed591942eb407ec 808 Pfam PF12704 MacB-like periplasmic core domain 472 629 1.7E-8 T 17-10-2018 IPR025857 MacB-like periplasmic core domain VI35_05580 d9cf0b1bd0731728565f9d84ba9e5370 362 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 359 40.951 T 17-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 VI35_05580 d9cf0b1bd0731728565f9d84ba9e5370 362 Gene3D G3DSA:3.30.70.1660 113 343 1.6E-94 T 17-10-2018 VI35_05580 d9cf0b1bd0731728565f9d84ba9e5370 362 SUPERFAMILY SSF75620 12 355 3.66E-134 T 17-10-2018 VI35_05580 d9cf0b1bd0731728565f9d84ba9e5370 362 Pfam PF03462 PCRF domain 14 205 5.3E-74 T 17-10-2018 IPR005139 Peptide chain release factor GO:0006415 VI35_05580 d9cf0b1bd0731728565f9d84ba9e5370 362 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 1 359 3.3E-168 T 17-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 VI35_05580 d9cf0b1bd0731728565f9d84ba9e5370 362 Pfam PF00472 RF-1 domain 216 323 3.0E-40 T 17-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 VI35_05580 d9cf0b1bd0731728565f9d84ba9e5370 362 Gene3D G3DSA:3.30.160.20 212 299 1.6E-94 T 17-10-2018 VI35_05580 d9cf0b1bd0731728565f9d84ba9e5370 362 Gene3D G3DSA:1.20.58.410 6 96 9.1E-7 T 17-10-2018 VI35_05580 d9cf0b1bd0731728565f9d84ba9e5370 362 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 230 246 - T 17-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 VI35_05580 d9cf0b1bd0731728565f9d84ba9e5370 362 SMART SM00937 66 180 9.4E-66 T 17-10-2018 IPR005139 Peptide chain release factor GO:0006415 VI35_19790 198bb84ecdc093e2d9b21dc24c1aad73 442 Hamap MF_01465 Protein translocase subunit SecY [secY]. 9 432 29.227 T 17-10-2018 IPR026593 Protein translocase subunit SecY VI35_19790 198bb84ecdc093e2d9b21dc24c1aad73 442 ProSitePatterns PS00756 Protein secY signature 2. 170 187 - T 17-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 VI35_19790 198bb84ecdc093e2d9b21dc24c1aad73 442 ProSitePatterns PS00755 Protein secY signature 1. 75 94 - T 17-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 VI35_19790 198bb84ecdc093e2d9b21dc24c1aad73 442 Gene3D G3DSA:1.10.3370.10 10 428 1.7E-158 T 17-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 VI35_19790 198bb84ecdc093e2d9b21dc24c1aad73 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 115 138 2.4E-92 T 17-10-2018 VI35_19790 198bb84ecdc093e2d9b21dc24c1aad73 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 269 288 2.4E-92 T 17-10-2018 VI35_19790 198bb84ecdc093e2d9b21dc24c1aad73 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 151 176 2.4E-92 T 17-10-2018 VI35_19790 198bb84ecdc093e2d9b21dc24c1aad73 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 74 94 2.4E-92 T 17-10-2018 VI35_19790 198bb84ecdc093e2d9b21dc24c1aad73 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 177 200 2.4E-92 T 17-10-2018 VI35_19790 198bb84ecdc093e2d9b21dc24c1aad73 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 369 387 2.4E-92 T 17-10-2018 VI35_19790 198bb84ecdc093e2d9b21dc24c1aad73 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 314 336 2.4E-92 T 17-10-2018 VI35_19790 198bb84ecdc093e2d9b21dc24c1aad73 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 401 419 2.4E-92 T 17-10-2018 VI35_19790 198bb84ecdc093e2d9b21dc24c1aad73 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 22 40 2.4E-92 T 17-10-2018 VI35_19790 198bb84ecdc093e2d9b21dc24c1aad73 442 Pfam PF00344 SecY translocase 75 416 7.4E-116 T 17-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 VI35_19790 198bb84ecdc093e2d9b21dc24c1aad73 442 SUPERFAMILY SSF103491 14 423 8.76E-130 T 17-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 VI35_19790 198bb84ecdc093e2d9b21dc24c1aad73 442 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 19 428 1.6E-133 T 17-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 VI35_19790 198bb84ecdc093e2d9b21dc24c1aad73 442 PIRSF PIRSF004557 6 440 1.8E-120 T 17-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 VI35_05175 e4a48b88e08375f7c74ecb8fee6fae23 318 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 223 239 - T 17-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site VI35_05175 e4a48b88e08375f7c74ecb8fee6fae23 318 Gene3D G3DSA:3.40.50.720 25 314 3.3E-108 T 17-10-2018 VI35_05175 e4a48b88e08375f7c74ecb8fee6fae23 318 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 107 287 1.2E-55 T 17-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 VI35_05175 e4a48b88e08375f7c74ecb8fee6fae23 318 SUPERFAMILY SSF52283 4 137 7.56E-27 T 17-10-2018 VI35_05175 e4a48b88e08375f7c74ecb8fee6fae23 318 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 194 216 - T 17-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site VI35_05175 e4a48b88e08375f7c74ecb8fee6fae23 318 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 33 315 2.1E-20 T 17-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 VI35_05175 e4a48b88e08375f7c74ecb8fee6fae23 318 Gene3D G3DSA:3.40.50.720 97 286 3.3E-108 T 17-10-2018 VI35_05175 e4a48b88e08375f7c74ecb8fee6fae23 318 SUPERFAMILY SSF51735 101 288 7.14E-55 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_07520 79a94cae2aff97ee8c63a9f17edaaf9e 213 Hamap MF_00942 Endonuclease III [nth]. 1 209 37.801 T 17-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 VI35_07520 79a94cae2aff97ee8c63a9f17edaaf9e 213 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 187 203 - T 17-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 VI35_07520 79a94cae2aff97ee8c63a9f17edaaf9e 213 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 34 168 1.2E-17 T 17-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 VI35_07520 79a94cae2aff97ee8c63a9f17edaaf9e 213 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 187 203 1.5E-4 T 17-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 VI35_07520 79a94cae2aff97ee8c63a9f17edaaf9e 213 TIGRFAM TIGR01083 nth: endonuclease III 4 194 1.0E-88 T 17-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 VI35_07520 79a94cae2aff97ee8c63a9f17edaaf9e 213 SUPERFAMILY SSF48150 2 207 1.48E-72 T 17-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 VI35_07520 79a94cae2aff97ee8c63a9f17edaaf9e 213 SMART SM00478 38 185 2.2E-53 T 17-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 VI35_07520 79a94cae2aff97ee8c63a9f17edaaf9e 213 Gene3D G3DSA:1.10.1670.10 11 203 3.6E-79 T 17-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 VI35_07520 79a94cae2aff97ee8c63a9f17edaaf9e 213 PIRSF PIRSF001435 1 210 4.0E-52 T 17-10-2018 VI35_07520 79a94cae2aff97ee8c63a9f17edaaf9e 213 SMART SM00525 186 206 6.5E-6 T 17-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 VI35_07520 79a94cae2aff97ee8c63a9f17edaaf9e 213 ProSitePatterns PS01155 Endonuclease III family signature. 102 131 - T 17-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 VI35_07520 79a94cae2aff97ee8c63a9f17edaaf9e 213 Pfam PF00633 Helix-hairpin-helix motif 99 127 3.0E-8 T 17-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 VI35_07520 79a94cae2aff97ee8c63a9f17edaaf9e 213 Gene3D G3DSA:1.10.340.30 21 132 3.6E-79 T 17-10-2018 VI35_03330 39c40c8e696d8aa6327598fd371c2515 440 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 269 439 1.8E-23 T 17-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 VI35_03330 39c40c8e696d8aa6327598fd371c2515 440 Gene3D G3DSA:3.40.50.150 88 434 3.9E-114 T 17-10-2018 VI35_03330 39c40c8e696d8aa6327598fd371c2515 440 Gene3D G3DSA:2.40.50.140 1 87 6.5E-29 T 17-10-2018 VI35_03330 39c40c8e696d8aa6327598fd371c2515 440 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 422 432 - T 17-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site VI35_03330 39c40c8e696d8aa6327598fd371c2515 440 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 24 432 4.5E-115 T 17-10-2018 VI35_03330 39c40c8e696d8aa6327598fd371c2515 440 SUPERFAMILY SSF50249 3 66 2.28E-13 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_03330 39c40c8e696d8aa6327598fd371c2515 440 SUPERFAMILY SSF53335 76 439 1.57E-83 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_03330 39c40c8e696d8aa6327598fd371c2515 440 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 371 401 - T 17-10-2018 IPR030390 RNA methyltransferase TrmA, active site VI35_03330 39c40c8e696d8aa6327598fd371c2515 440 Gene3D G3DSA:3.40.1350.30 135 272 3.9E-114 T 17-10-2018 VI35_03330 39c40c8e696d8aa6327598fd371c2515 440 Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. 18 440 67.07 T 17-10-2018 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 VI35_03330 39c40c8e696d8aa6327598fd371c2515 440 Pfam PF01938 TRAM domain 15 64 8.0E-7 T 17-10-2018 IPR002792 TRAM domain VI35_06690 f15be5da615daacc6c191ca343531bfb 332 Pfam PF13377 Periplasmic binding protein-like domain 170 331 1.2E-36 T 17-10-2018 VI35_06690 f15be5da615daacc6c191ca343531bfb 332 Gene3D G3DSA:3.40.50.2300 161 291 3.3E-75 T 17-10-2018 VI35_06690 f15be5da615daacc6c191ca343531bfb 332 SUPERFAMILY SSF53822 61 332 1.41E-77 T 17-10-2018 IPR028082 Periplasmic binding protein-like I VI35_06690 f15be5da615daacc6c191ca343531bfb 332 Gene3D G3DSA:3.40.50.2300 62 309 3.3E-75 T 17-10-2018 VI35_06690 f15be5da615daacc6c191ca343531bfb 332 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 2.0E-5 T 17-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VI35_06690 f15be5da615daacc6c191ca343531bfb 332 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 2.0E-5 T 17-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VI35_06690 f15be5da615daacc6c191ca343531bfb 332 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 7.8E-18 T 17-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VI35_06690 f15be5da615daacc6c191ca343531bfb 332 SUPERFAMILY SSF47413 2 60 1.97E-16 T 17-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VI35_06690 f15be5da615daacc6c191ca343531bfb 332 Gene3D G3DSA:1.10.260.40 1 60 1.1E-21 T 17-10-2018 VI35_06690 f15be5da615daacc6c191ca343531bfb 332 SMART SM00354 1 71 1.8E-29 T 17-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VI35_17705 660bdaa8feaf891a0975deb280264521 328 SUPERFAMILY SSF51735 123 285 5.42E-35 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_17705 660bdaa8feaf891a0975deb280264521 328 Pfam PF13602 Zinc-binding dehydrogenase 193 318 8.8E-23 T 17-10-2018 VI35_17705 660bdaa8feaf891a0975deb280264521 328 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 32 95 2.9E-8 T 17-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 VI35_17705 660bdaa8feaf891a0975deb280264521 328 Gene3D G3DSA:3.90.180.10 13 316 1.1E-91 T 17-10-2018 VI35_17705 660bdaa8feaf891a0975deb280264521 328 SUPERFAMILY SSF50129 2 156 3.5E-31 T 17-10-2018 IPR011032 GroES-like superfamily VI35_17705 660bdaa8feaf891a0975deb280264521 328 SMART SM00829 14 318 3.6E-16 T 17-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 VI35_17705 660bdaa8feaf891a0975deb280264521 328 Gene3D G3DSA:3.40.50.720 134 269 1.1E-91 T 17-10-2018 VI35_05775 a15556b9d8842c94e987c655e928bda9 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 144 160 5.7E-20 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_05775 a15556b9d8842c94e987c655e928bda9 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 191 208 5.7E-20 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_05775 a15556b9d8842c94e987c655e928bda9 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 189 5.7E-20 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_05775 a15556b9d8842c94e987c655e928bda9 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 15 32 5.7E-20 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_05775 a15556b9d8842c94e987c655e928bda9 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 92 103 5.7E-20 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_05775 a15556b9d8842c94e987c655e928bda9 251 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 14 183 0.0051 T 17-10-2018 VI35_05775 a15556b9d8842c94e987c655e928bda9 251 Pfam PF00106 short chain dehydrogenase 14 213 3.9E-48 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_05775 a15556b9d8842c94e987c655e928bda9 251 Gene3D G3DSA:3.40.50.720 2 250 1.4E-69 T 17-10-2018 VI35_05775 a15556b9d8842c94e987c655e928bda9 251 SUPERFAMILY SSF51735 11 247 4.72E-59 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_05775 a15556b9d8842c94e987c655e928bda9 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 157 185 - T 17-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 VI35_07030 071d0aefd1bb13860c66325b04c6af91 169 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 74 108 - T 17-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 VI35_07030 071d0aefd1bb13860c66325b04c6af91 169 SUPERFAMILY SSF53927 22 149 2.66E-31 T 17-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 VI35_07030 071d0aefd1bb13860c66325b04c6af91 169 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 25 119 1.5E-15 T 17-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain VI35_07030 071d0aefd1bb13860c66325b04c6af91 169 Gene3D G3DSA:3.40.140.10 24 162 4.3E-34 T 17-10-2018 VI35_15135 bb5d3628f41a5508a2bd261501371294 375 SUPERFAMILY SSF161098 65 132 6.28E-13 T 17-10-2018 IPR035906 MetI-like superfamily VI35_15135 bb5d3628f41a5508a2bd261501371294 375 Gene3D G3DSA:1.10.3720.10 52 155 1.2E-14 T 17-10-2018 IPR035906 MetI-like superfamily VI35_15135 bb5d3628f41a5508a2bd261501371294 375 Gene3D G3DSA:1.10.3720.10 161 371 1.8E-35 T 17-10-2018 IPR035906 MetI-like superfamily VI35_15135 bb5d3628f41a5508a2bd261501371294 375 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 66 128 5.5E-18 T 17-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 VI35_15135 bb5d3628f41a5508a2bd261501371294 375 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 204 371 3.0E-14 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_15135 bb5d3628f41a5508a2bd261501371294 375 SUPERFAMILY SSF161098 167 356 1.31E-27 T 17-10-2018 IPR035906 MetI-like superfamily VI35_18140 00bdd5a1e9533a4db10281aeaa29107e 369 Gene3D G3DSA:3.40.50.300 101 354 1.6E-83 T 17-10-2018 VI35_18140 00bdd5a1e9533a4db10281aeaa29107e 369 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 344 6.9E-124 T 17-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 VI35_18140 00bdd5a1e9533a4db10281aeaa29107e 369 Gene3D G3DSA:3.30.450.90 1 99 3.0E-23 T 17-10-2018 VI35_18140 00bdd5a1e9533a4db10281aeaa29107e 369 Pfam PF00437 Type II/IV secretion system protein 119 268 8.5E-37 T 17-10-2018 IPR001482 Type II/IV secretion system protein VI35_18140 00bdd5a1e9533a4db10281aeaa29107e 369 SUPERFAMILY SSF52540 5 337 9.97E-64 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_11055 09ce393134e99fce875a4387570b9222 310 Pfam PF00294 pfkB family carbohydrate kinase 1 294 3.3E-74 T 17-10-2018 IPR011611 Carbohydrate kinase PfkB VI35_11055 09ce393134e99fce875a4387570b9222 310 Hamap MF_01987 Ribokinase [rbsK]. 2 301 26.379 T 17-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 VI35_11055 09ce393134e99fce875a4387570b9222 310 TIGRFAM TIGR02152 D_ribokin_bact: ribokinase 5 299 1.9E-111 T 17-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 VI35_11055 09ce393134e99fce875a4387570b9222 310 SUPERFAMILY SSF53613 1 301 1.71E-85 T 17-10-2018 IPR029056 Ribokinase-like VI35_11055 09ce393134e99fce875a4387570b9222 310 Gene3D G3DSA:3.40.1190.20 1 310 7.3E-105 T 17-10-2018 IPR029056 Ribokinase-like VI35_11055 09ce393134e99fce875a4387570b9222 310 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 246 259 - T 17-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 VI35_11055 09ce393134e99fce875a4387570b9222 310 PRINTS PR00990 Ribokinase signature 105 118 1.1E-35 T 17-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 VI35_11055 09ce393134e99fce875a4387570b9222 310 PRINTS PR00990 Ribokinase signature 173 188 1.1E-35 T 17-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 VI35_11055 09ce393134e99fce875a4387570b9222 310 PRINTS PR00990 Ribokinase signature 217 228 1.1E-35 T 17-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 VI35_11055 09ce393134e99fce875a4387570b9222 310 PRINTS PR00990 Ribokinase signature 33 52 1.1E-35 T 17-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 VI35_11055 09ce393134e99fce875a4387570b9222 310 PRINTS PR00990 Ribokinase signature 6 27 1.1E-35 T 17-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 VI35_13940 346393640e8e621727944f03a066c2b9 217 SUPERFAMILY SSF46689 4 73 3.44E-18 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_13940 346393640e8e621727944f03a066c2b9 217 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 4.8E-9 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_13940 346393640e8e621727944f03a066c2b9 217 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 54 4.8E-9 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_13940 346393640e8e621727944f03a066c2b9 217 SUPERFAMILY SSF48498 79 210 6.23E-40 T 17-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VI35_13940 346393640e8e621727944f03a066c2b9 217 ProSitePatterns PS01081 TetR-type HTH domain signature. 22 53 - T 17-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site VI35_13940 346393640e8e621727944f03a066c2b9 217 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 56 3.0E-14 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_13940 346393640e8e621727944f03a066c2b9 217 Gene3D G3DSA:1.10.357.10 1 209 3.5E-61 T 17-10-2018 VI35_09915 7554ee548e2caea4f44de46ff3add8a0 424 SUPERFAMILY SSF52540 62 403 2.91E-72 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_09915 7554ee548e2caea4f44de46ff3add8a0 424 Pfam PF07724 AAA domain (Cdc48 subfamily) 112 310 4.8E-49 T 17-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VI35_09915 7554ee548e2caea4f44de46ff3add8a0 424 Gene3D G3DSA:1.10.8.60 316 424 1.5E-40 T 17-10-2018 VI35_09915 7554ee548e2caea4f44de46ff3add8a0 424 Gene3D G3DSA:3.30.50.30 2 52 3.4E-25 T 17-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily VI35_09915 7554ee548e2caea4f44de46ff3add8a0 424 SMART SM00382 111 333 3.2E-10 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_09915 7554ee548e2caea4f44de46ff3add8a0 424 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 11 411 7.9E-209 T 17-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 VI35_09915 7554ee548e2caea4f44de46ff3add8a0 424 SMART SM01086 317 412 7.7E-34 T 17-10-2018 IPR019489 Clp ATPase, C-terminal VI35_09915 7554ee548e2caea4f44de46ff3add8a0 424 SMART SM00994 12 51 1.6E-23 T 17-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 VI35_09915 7554ee548e2caea4f44de46ff3add8a0 424 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 2 415 53.314 T 17-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 VI35_09915 7554ee548e2caea4f44de46ff3add8a0 424 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 317 391 3.1E-16 T 17-10-2018 IPR019489 Clp ATPase, C-terminal VI35_09915 7554ee548e2caea4f44de46ff3add8a0 424 Pfam PF06689 ClpX C4-type zinc finger 13 50 5.8E-20 T 17-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 VI35_09915 7554ee548e2caea4f44de46ff3add8a0 424 SUPERFAMILY SSF57716 13 48 1.08E-11 T 17-10-2018 VI35_09915 7554ee548e2caea4f44de46ff3add8a0 424 Gene3D G3DSA:3.40.50.300 58 315 6.3E-107 T 17-10-2018 VI35_09000 293a5c7640fd46c4da3ea7233cbda05d 517 TIGRFAM TIGR01539 portal_lambda: phage portal protein, lambda family 31 478 7.9E-105 T 17-10-2018 IPR006429 Phage portal protein, lambda family GO:0005198|GO:0019068 VI35_09000 293a5c7640fd46c4da3ea7233cbda05d 517 Pfam PF05136 Phage portal protein, lambda family 36 373 1.1E-79 T 17-10-2018 IPR006429 Phage portal protein, lambda family GO:0005198|GO:0019068 VI35_21190 8c04813d60801b046cde34135b67074a 254 SMART SM00382 26 214 2.9E-14 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_21190 8c04813d60801b046cde34135b67074a 254 SUPERFAMILY SSF52540 2 228 1.18E-54 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_21190 8c04813d60801b046cde34135b67074a 254 Gene3D G3DSA:3.40.50.300 1 254 1.5E-62 T 17-10-2018 VI35_21190 8c04813d60801b046cde34135b67074a 254 Pfam PF00005 ABC transporter 17 165 7.0E-28 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_00080 a0690c1711e4b110292ea43093162fc3 685 Gene3D G3DSA:2.70.150.20 111 219 9.6E-25 T 17-10-2018 VI35_00080 a0690c1711e4b110292ea43093162fc3 685 TIGRFAM TIGR01497 kdpB: K+-transporting ATPase, B subunit 19 680 3.9E-284 T 17-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 VI35_00080 a0690c1711e4b110292ea43093162fc3 685 SUPERFAMILY SSF56784 300 564 9.8E-37 T 17-10-2018 IPR036412 HAD-like superfamily VI35_00080 a0690c1711e4b110292ea43093162fc3 685 Pfam PF00122 E1-E2 ATPase 114 291 9.1E-29 T 17-10-2018 VI35_00080 a0690c1711e4b110292ea43093162fc3 685 SUPERFAMILY SSF81653 117 214 3.01E-19 T 17-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 VI35_00080 a0690c1711e4b110292ea43093162fc3 685 Gene3D G3DSA:3.40.1110.10 326 450 7.7E-37 T 17-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 VI35_00080 a0690c1711e4b110292ea43093162fc3 685 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 380 608 3.5E-42 T 17-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 VI35_00080 a0690c1711e4b110292ea43093162fc3 685 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 80 331 3.5E-29 T 17-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 VI35_00080 a0690c1711e4b110292ea43093162fc3 685 SUPERFAMILY SSF81660 323 455 6.21E-28 T 17-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 VI35_00080 a0690c1711e4b110292ea43093162fc3 685 ProSitePatterns PS01229 Hypothetical cof family signature 2. 520 542 - T 17-10-2018 VI35_00080 a0690c1711e4b110292ea43093162fc3 685 Hamap MF_00285 Potassium-transporting ATPase ATP-binding subunit [kdpB]. 17 683 37.932 T 17-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 VI35_00080 a0690c1711e4b110292ea43093162fc3 685 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 314 320 - T 17-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 VI35_00080 a0690c1711e4b110292ea43093162fc3 685 SUPERFAMILY SSF81665 40 306 1.09E-8 T 17-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 VI35_00080 a0690c1711e4b110292ea43093162fc3 685 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 520 539 3.7E-22 T 17-10-2018 VI35_00080 a0690c1711e4b110292ea43093162fc3 685 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 543 555 3.7E-22 T 17-10-2018 VI35_00080 a0690c1711e4b110292ea43093162fc3 685 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 467 477 3.7E-22 T 17-10-2018 VI35_00080 a0690c1711e4b110292ea43093162fc3 685 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 312 326 3.7E-22 T 17-10-2018 VI35_00080 a0690c1711e4b110292ea43093162fc3 685 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 161 175 3.7E-22 T 17-10-2018 VI35_00080 a0690c1711e4b110292ea43093162fc3 685 Pfam PF00702 haloacid dehalogenase-like hydrolase 308 534 5.3E-30 T 17-10-2018 VI35_10145 ed142a1ed41f29e35cf0692514f08d4f 678 Gene3D G3DSA:3.40.50.1700 475 678 1.2E-17 T 17-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 VI35_10145 ed142a1ed41f29e35cf0692514f08d4f 678 Gene3D G3DSA:3.20.20.300 58 471 1.4E-93 T 17-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 VI35_10145 ed142a1ed41f29e35cf0692514f08d4f 678 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 580 678 1.1E-7 T 17-10-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 VI35_10145 ed142a1ed41f29e35cf0692514f08d4f 678 SUPERFAMILY SSF51445 61 488 2.21E-73 T 17-10-2018 IPR017853 Glycoside hydrolase superfamily VI35_10145 ed142a1ed41f29e35cf0692514f08d4f 678 PRINTS PR00133 Glycosyl hydrolase family 3 signature 179 198 4.1E-11 T 17-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 VI35_10145 ed142a1ed41f29e35cf0692514f08d4f 678 PRINTS PR00133 Glycosyl hydrolase family 3 signature 225 241 4.1E-11 T 17-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 VI35_10145 ed142a1ed41f29e35cf0692514f08d4f 678 PRINTS PR00133 Glycosyl hydrolase family 3 signature 263 279 4.1E-11 T 17-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 VI35_10145 ed142a1ed41f29e35cf0692514f08d4f 678 PRINTS PR00133 Glycosyl hydrolase family 3 signature 347 365 4.1E-11 T 17-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 VI35_10145 ed142a1ed41f29e35cf0692514f08d4f 678 SUPERFAMILY SSF52279 490 678 3.14E-17 T 17-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 VI35_10145 ed142a1ed41f29e35cf0692514f08d4f 678 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 135 385 6.5E-32 T 17-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 VI35_11355 7fced2dc842f4b297d32b7096fad7cc5 251 Gene3D G3DSA:3.20.20.70 1 251 3.2E-94 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_11355 7fced2dc842f4b297d32b7096fad7cc5 251 Pfam PF00121 Triosephosphate isomerase 5 246 9.1E-86 T 17-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_11355 7fced2dc842f4b297d32b7096fad7cc5 251 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 248 57.588 T 17-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_11355 7fced2dc842f4b297d32b7096fad7cc5 251 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 240 9.7E-69 T 17-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_11355 7fced2dc842f4b297d32b7096fad7cc5 251 SUPERFAMILY SSF51351 1 247 1.57E-89 T 17-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_11355 7fced2dc842f4b297d32b7096fad7cc5 251 ProSitePatterns PS00171 Triosephosphate isomerase active site. 165 175 - T 17-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_01560 7193f8f436023b6232af06a2f7da497a 323 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 72 3.4E-17 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_01560 7193f8f436023b6232af06a2f7da497a 323 Gene3D G3DSA:3.40.190.290 102 291 2.0E-13 T 17-10-2018 VI35_01560 7193f8f436023b6232af06a2f7da497a 323 Gene3D G3DSA:1.10.10.10 10 97 4.8E-19 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_01560 7193f8f436023b6232af06a2f7da497a 323 SUPERFAMILY SSF46785 6 116 1.17E-17 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_01560 7193f8f436023b6232af06a2f7da497a 323 Pfam PF03466 LysR substrate binding domain 99 291 4.0E-21 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_01560 7193f8f436023b6232af06a2f7da497a 323 SUPERFAMILY SSF53850 99 301 1.09E-24 T 17-10-2018 VI35_15835 4c9d00f996e6e359de6ee49edb687f17 172 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 168 5.5E-63 T 17-10-2018 IPR008514 Type VI secretion system effector, Hcp VI35_15835 4c9d00f996e6e359de6ee49edb687f17 172 Pfam PF05638 Type VI secretion system effector, Hcp 6 155 1.1E-30 T 17-10-2018 IPR008514 Type VI secretion system effector, Hcp VI35_15835 4c9d00f996e6e359de6ee49edb687f17 172 SUPERFAMILY SSF141452 3 168 6.15E-38 T 17-10-2018 IPR036624 Hcp1-like superfamily VI35_15835 4c9d00f996e6e359de6ee49edb687f17 172 Gene3D G3DSA:2.30.110.20 2 172 5.1E-67 T 17-10-2018 IPR036624 Hcp1-like superfamily VI35_11330 ededf5627f0081eed431c02628072ff4 1475 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1336 1423 8.6E-15 T 17-10-2018 VI35_11330 ededf5627f0081eed431c02628072ff4 1475 Gene3D G3DSA:3.40.1140.10 1382 1467 2.0E-37 T 17-10-2018 VI35_11330 ededf5627f0081eed431c02628072ff4 1475 Gene3D G3DSA:1.20.58.850 581 849 3.7E-102 T 17-10-2018 VI35_11330 ededf5627f0081eed431c02628072ff4 1475 Pfam PF16330 MukB hinge domain 644 809 1.1E-66 T 17-10-2018 IPR032520 MukB, hinge domain VI35_11330 ededf5627f0081eed431c02628072ff4 1475 Pfam PF04310 MukB N-terminal 2 225 1.6E-121 T 17-10-2018 IPR007406 MukB, N-terminal domain GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 VI35_11330 ededf5627f0081eed431c02628072ff4 1475 SUPERFAMILY SSF52540 19 1431 1.06E-5 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_11330 ededf5627f0081eed431c02628072ff4 1475 Gene3D G3DSA:1.20.1060.30 666 777 3.7E-102 T 17-10-2018 VI35_11330 ededf5627f0081eed431c02628072ff4 1475 SUPERFAMILY SSF52540 20 222 3.6E-22 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_11330 ededf5627f0081eed431c02628072ff4 1475 Gene3D G3DSA:1.20.58.850 619 829 3.7E-102 T 17-10-2018 VI35_11330 ededf5627f0081eed431c02628072ff4 1475 Gene3D G3DSA:3.40.1140.10 1 225 8.8E-92 T 17-10-2018 VI35_19505 7c6378f0be447c2c29eb9f3aac7ecc1d 639 SMART SM00052 393 637 2.9E-23 T 17-10-2018 IPR001633 EAL domain VI35_19505 7c6378f0be447c2c29eb9f3aac7ecc1d 639 Pfam PF00563 EAL domain 402 632 1.4E-44 T 17-10-2018 IPR001633 EAL domain VI35_19505 7c6378f0be447c2c29eb9f3aac7ecc1d 639 SMART SM00267 211 381 1.2E-7 T 17-10-2018 IPR000160 GGDEF domain VI35_19505 7c6378f0be447c2c29eb9f3aac7ecc1d 639 Gene3D G3DSA:3.30.70.270 205 382 2.2E-18 T 17-10-2018 VI35_19505 7c6378f0be447c2c29eb9f3aac7ecc1d 639 Gene3D G3DSA:3.20.20.450 393 637 4.3E-47 T 17-10-2018 IPR035919 EAL domain superfamily VI35_19505 7c6378f0be447c2c29eb9f3aac7ecc1d 639 Pfam PF17157 Gammaproteobacterial periplasmic sensor domain 35 128 9.5E-19 T 17-10-2018 IPR033423 Gammaproteobacterial periplasmic sensor domain GAPES4 VI35_19505 7c6378f0be447c2c29eb9f3aac7ecc1d 639 SUPERFAMILY SSF141868 401 635 4.71E-47 T 17-10-2018 IPR035919 EAL domain superfamily VI35_19505 7c6378f0be447c2c29eb9f3aac7ecc1d 639 SUPERFAMILY SSF55073 228 383 3.84E-13 T 17-10-2018 IPR029787 Nucleotide cyclase VI35_19505 7c6378f0be447c2c29eb9f3aac7ecc1d 639 Pfam PF00990 Diguanylate cyclase, GGDEF domain 222 375 8.0E-16 T 17-10-2018 IPR000160 GGDEF domain VI35_15705 d4db468abfef0edf6583c5a3330b9c3d 345 PIRSF PIRSF006268 1 344 1.0E-110 T 17-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 VI35_15705 d4db468abfef0edf6583c5a3330b9c3d 345 Pfam PF02424 ApbE family 38 318 4.0E-86 T 17-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 VI35_15705 d4db468abfef0edf6583c5a3330b9c3d 345 Gene3D G3DSA:3.10.520.20 21 345 1.4E-118 T 17-10-2018 VI35_15705 d4db468abfef0edf6583c5a3330b9c3d 345 SUPERFAMILY SSF143631 31 342 1.12E-103 T 17-10-2018 IPR003374 ApbE-like superfamily VI35_00415 12d72139858dac6a379a5a41c288ebb3 224 SUPERFAMILY SSF102712 113 190 3.4E-6 T 17-10-2018 VI35_00415 12d72139858dac6a379a5a41c288ebb3 224 SUPERFAMILY SSF47781 17 90 1.49E-11 T 17-10-2018 IPR010994 RuvA domain 2-like VI35_00415 12d72139858dac6a379a5a41c288ebb3 224 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 173 178 - T 17-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site VI35_00415 12d72139858dac6a379a5a41c288ebb3 224 TIGRFAM TIGR00608 radc: DNA repair protein RadC 11 224 1.5E-73 T 17-10-2018 IPR001405 Uncharacterised protein family UPF0758 VI35_00415 12d72139858dac6a379a5a41c288ebb3 224 Pfam PF04002 RadC-like JAB domain 104 222 4.7E-41 T 17-10-2018 IPR025657 RadC-like JAB domain VI35_00415 12d72139858dac6a379a5a41c288ebb3 224 Gene3D G3DSA:1.10.150.20 33 87 3.5E-5 T 17-10-2018 VI35_00415 12d72139858dac6a379a5a41c288ebb3 224 Gene3D G3DSA:3.40.140.10 102 224 5.1E-40 T 17-10-2018 VI35_00305 c305171742a0ed6fd95df428244fae64 551 Pfam PF07694 5TMR of 5TMR-LYT 23 187 2.8E-42 T 17-10-2018 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 VI35_00305 c305171742a0ed6fd95df428244fae64 551 SUPERFAMILY SSF55874 408 544 1.06E-18 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_00305 c305171742a0ed6fd95df428244fae64 551 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 450 546 2.7E-5 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_00305 c305171742a0ed6fd95df428244fae64 551 SMART SM00387 445 547 6.7E-9 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_00305 c305171742a0ed6fd95df428244fae64 551 Gene3D G3DSA:1.10.1760.20 30 193 8.4E-13 T 17-10-2018 VI35_00305 c305171742a0ed6fd95df428244fae64 551 SUPERFAMILY SSF55781 222 340 6.45E-6 T 17-10-2018 VI35_00305 c305171742a0ed6fd95df428244fae64 551 Pfam PF06580 Histidine kinase 354 432 3.2E-26 T 17-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 VI35_00305 c305171742a0ed6fd95df428244fae64 551 Gene3D G3DSA:3.30.565.10 406 549 4.0E-17 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_16300 cb96ce6c488ed2a80d3e11880e904692 212 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 5 99 2.7E-8 T 17-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain VI35_16300 cb96ce6c488ed2a80d3e11880e904692 212 Gene3D G3DSA:3.10.50.40 7 153 2.7E-53 T 17-10-2018 VI35_16300 cb96ce6c488ed2a80d3e11880e904692 212 Gene3D G3DSA:2.40.10.330 71 120 2.7E-53 T 17-10-2018 VI35_16300 cb96ce6c488ed2a80d3e11880e904692 212 SUPERFAMILY SSF54534 3 139 2.36E-32 T 17-10-2018 VI35_16235 92813e2bde11b6e90fb837e4657f02be 1315 SUPERFAMILY SSF51730 260 616 3.69E-123 T 17-10-2018 IPR029041 FAD-linked oxidoreductase-like VI35_16235 92813e2bde11b6e90fb837e4657f02be 1315 SUPERFAMILY SSF53720 656 1107 5.76E-126 T 17-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 VI35_16235 92813e2bde11b6e90fb837e4657f02be 1315 Gene3D G3DSA:1.10.1220.10 11 52 1.5E-19 T 17-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 VI35_16235 92813e2bde11b6e90fb837e4657f02be 1315 Pfam PF00171 Aldehyde dehydrogenase family 660 1100 5.4E-112 T 17-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 VI35_16235 92813e2bde11b6e90fb837e4657f02be 1315 Pfam PF01619 Proline dehydrogenase 272 567 1.4E-100 T 17-10-2018 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|Reactome: R-HSA-70688 VI35_16235 92813e2bde11b6e90fb837e4657f02be 1315 Gene3D G3DSA:3.40.605.10 655 1106 6.9E-145 T 17-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 VI35_16235 92813e2bde11b6e90fb837e4657f02be 1315 Gene3D G3DSA:3.20.20.220 218 608 1.2E-159 T 17-10-2018 VI35_16235 92813e2bde11b6e90fb837e4657f02be 1315 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 146 257 1.2E-45 T 17-10-2018 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 VI35_16235 92813e2bde11b6e90fb837e4657f02be 1315 SUPERFAMILY SSF47598 3 44 3.26E-10 T 17-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 VI35_16235 92813e2bde11b6e90fb837e4657f02be 1315 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 909 920 - T 17-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 VI35_16235 92813e2bde11b6e90fb837e4657f02be 1315 SUPERFAMILY SSF81935 86 259 7.72E-65 T 17-10-2018 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 VI35_16235 92813e2bde11b6e90fb837e4657f02be 1315 PIRSF PIRSF000197 73 1315 0.0 T 17-10-2018 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 VI35_16235 92813e2bde11b6e90fb837e4657f02be 1315 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 608 1108 1.6E-242 T 17-10-2018 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 VI35_16235 92813e2bde11b6e90fb837e4657f02be 1315 Gene3D G3DSA:1.20.5.550 85 136 2.5E-27 T 17-10-2018 IPR024090 Proline dehydrogenase PutA, domain I GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 VI35_16235 92813e2bde11b6e90fb837e4657f02be 1315 Gene3D G3DSA:3.40.309.10 884 1078 6.9E-145 T 17-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 VI35_16095 9fa1d844fd7d263b86223b922a7f2fb8 193 SUPERFAMILY SSF160443 94 175 2.09E-15 T 17-10-2018 IPR036063 Smr domain superfamily VI35_16095 9fa1d844fd7d263b86223b922a7f2fb8 193 SMART SM00463 92 175 2.3E-14 T 17-10-2018 IPR002625 Smr domain VI35_16095 9fa1d844fd7d263b86223b922a7f2fb8 193 Gene3D G3DSA:3.30.1370.110 46 181 1.2E-42 T 17-10-2018 VI35_16095 9fa1d844fd7d263b86223b922a7f2fb8 193 Pfam PF01713 Smr domain 95 175 2.6E-21 T 17-10-2018 IPR002625 Smr domain VI35_03510 c031aedd9c0f6ae6611aec0dac9ce3c0 307 Pfam PF16200 C-terminal region of band_7 241 300 6.2E-7 T 17-10-2018 IPR032435 Band 7, C-terminal extension Reactome: R-HSA-8949664 VI35_03510 c031aedd9c0f6ae6611aec0dac9ce3c0 307 PRINTS PR00721 Stomatin signature 76 97 1.3E-28 T 17-10-2018 IPR001972 Stomatin family GO:0016020 VI35_03510 c031aedd9c0f6ae6611aec0dac9ce3c0 307 PRINTS PR00721 Stomatin signature 131 154 1.3E-28 T 17-10-2018 IPR001972 Stomatin family GO:0016020 VI35_03510 c031aedd9c0f6ae6611aec0dac9ce3c0 307 PRINTS PR00721 Stomatin signature 174 195 1.3E-28 T 17-10-2018 IPR001972 Stomatin family GO:0016020 VI35_03510 c031aedd9c0f6ae6611aec0dac9ce3c0 307 PRINTS PR00721 Stomatin signature 111 128 1.3E-28 T 17-10-2018 IPR001972 Stomatin family GO:0016020 VI35_03510 c031aedd9c0f6ae6611aec0dac9ce3c0 307 PRINTS PR00721 Stomatin signature 155 173 1.3E-28 T 17-10-2018 IPR001972 Stomatin family GO:0016020 VI35_03510 c031aedd9c0f6ae6611aec0dac9ce3c0 307 SMART SM00244 21 179 4.9E-57 T 17-10-2018 IPR001107 Band 7 domain VI35_03510 c031aedd9c0f6ae6611aec0dac9ce3c0 307 Pfam PF01145 SPFH domain / Band 7 family 25 194 2.4E-30 T 17-10-2018 IPR001107 Band 7 domain VI35_03510 c031aedd9c0f6ae6611aec0dac9ce3c0 307 Gene3D G3DSA:3.30.479.30 49 181 8.3E-41 T 17-10-2018 VI35_03510 c031aedd9c0f6ae6611aec0dac9ce3c0 307 SUPERFAMILY SSF117892 52 186 1.7E-37 T 17-10-2018 IPR036013 Band 7/SPFH domain superfamily VI35_17320 145b3d2abe37eb1d180ed2fa04e8e5d9 272 Pfam PF13174 Tetratricopeptide repeat 227 259 5.4E-6 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_17320 145b3d2abe37eb1d180ed2fa04e8e5d9 272 Pfam PF13432 Tetratricopeptide repeat 164 213 8.4E-7 T 17-10-2018 VI35_17320 145b3d2abe37eb1d180ed2fa04e8e5d9 272 Gene3D G3DSA:1.20.5.110 53 130 4.7E-24 T 17-10-2018 VI35_17320 145b3d2abe37eb1d180ed2fa04e8e5d9 272 Pfam PF16331 TolA binding protein trimerisation 55 129 5.3E-23 T 17-10-2018 IPR032519 YbgF, trimerisation domain GO:0070206 VI35_17320 145b3d2abe37eb1d180ed2fa04e8e5d9 272 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 151 269 3.7E-41 T 17-10-2018 IPR014162 Cell division coordinator CpoB, C-terminal VI35_17320 145b3d2abe37eb1d180ed2fa04e8e5d9 272 Hamap MF_02066 Cell division coordinator CpoB [cpoB]. 9 272 19.699 T 17-10-2018 IPR034706 Cell division coordinator CpoB GO:0051301 VI35_17320 145b3d2abe37eb1d180ed2fa04e8e5d9 272 Gene3D G3DSA:1.25.40.10 150 272 6.1E-29 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_17320 145b3d2abe37eb1d180ed2fa04e8e5d9 272 SUPERFAMILY SSF48452 146 261 3.72E-14 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_07255 d97351720766802f62669648cc5f450b 89 SUPERFAMILY SSF64307 1 62 1.96E-15 T 17-10-2018 IPR036868 TusA-like domain superfamily VI35_07255 d97351720766802f62669648cc5f450b 89 Gene3D G3DSA:3.30.110.40 1 71 3.7E-13 T 17-10-2018 IPR036868 TusA-like domain superfamily VI35_07255 d97351720766802f62669648cc5f450b 89 Pfam PF01206 Sulfurtransferase TusA 3 60 2.3E-14 T 17-10-2018 IPR001455 TusA-like domain VI35_11185 73564964ee07b79162770ddbde9f31a1 574 SUPERFAMILY SSF52794 120 221 6.1E-37 T 17-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 VI35_11185 73564964ee07b79162770ddbde9f31a1 574 SUPERFAMILY SSF52794 4 103 1.57E-22 T 17-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 VI35_11185 73564964ee07b79162770ddbde9f31a1 574 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 229 563 1.1E-140 T 17-10-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 VI35_11185 73564964ee07b79162770ddbde9f31a1 574 Gene3D G3DSA:3.40.50.2300 111 221 1.1E-39 T 17-10-2018 VI35_11185 73564964ee07b79162770ddbde9f31a1 574 Gene3D G3DSA:3.40.50.2300 1 103 1.3E-18 T 17-10-2018 VI35_11185 73564964ee07b79162770ddbde9f31a1 574 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 123 209 3.2E-19 T 17-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 VI35_11185 73564964ee07b79162770ddbde9f31a1 574 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 6 94 1.9E-11 T 17-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 VI35_11185 73564964ee07b79162770ddbde9f31a1 574 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 122 205 1.3E-37 T 17-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 VI35_11185 73564964ee07b79162770ddbde9f31a1 574 Pfam PF02378 Phosphotransferase system, EIIC 244 507 2.0E-18 T 17-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 VI35_10590 191895d8ea74f017e02a50dc38340849 558 Pfam PF00501 AMP-binding enzyme 29 461 1.5E-109 T 17-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 VI35_10590 191895d8ea74f017e02a50dc38340849 558 SUPERFAMILY SSF56801 19 554 2.22E-150 T 17-10-2018 VI35_10590 191895d8ea74f017e02a50dc38340849 558 Pfam PF13193 AMP-binding enzyme C-terminal domain 470 544 1.3E-19 T 17-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain VI35_10590 191895d8ea74f017e02a50dc38340849 558 ProSitePatterns PS00455 Putative AMP-binding domain signature. 211 222 - T 17-10-2018 IPR020845 AMP-binding, conserved site VI35_10590 191895d8ea74f017e02a50dc38340849 558 Gene3D G3DSA:3.40.50.12780 13 457 3.3E-116 T 17-10-2018 VI35_10590 191895d8ea74f017e02a50dc38340849 558 Gene3D G3DSA:3.30.300.310 458 557 1.6E-32 T 17-10-2018 VI35_18615 6262b1a8bb29eeba98f65dcdf56bf1de 50 SUPERFAMILY SSF52833 10 47 9.66E-7 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_18615 6262b1a8bb29eeba98f65dcdf56bf1de 50 Gene3D G3DSA:3.40.30.10 6 50 1.7E-7 T 17-10-2018 VI35_01885 816dec65f0af36082dc901dffbf56e43 98 TIGRFAM TIGR03578 EF_0831: conserved hypothetical protein EF_0831/AHA_3912 2 96 2.6E-41 T 17-10-2018 IPR020037 Protein of unknown function DUF4312 VI35_01885 816dec65f0af36082dc901dffbf56e43 98 Pfam PF14189 Domain of unknown function (DUF4312) 6 87 2.2E-33 T 17-10-2018 IPR020037 Protein of unknown function DUF4312 VI35_18310 154e9d3b0e54cd3ec687366f054c6b6d 743 Gene3D G3DSA:3.30.450.20 326 445 2.7E-17 T 17-10-2018 VI35_18310 154e9d3b0e54cd3ec687366f054c6b6d 743 Pfam PF00990 Diguanylate cyclase, GGDEF domain 579 737 6.7E-47 T 17-10-2018 IPR000160 GGDEF domain VI35_18310 154e9d3b0e54cd3ec687366f054c6b6d 743 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 575 739 2.7E-40 T 17-10-2018 IPR000160 GGDEF domain VI35_18310 154e9d3b0e54cd3ec687366f054c6b6d 743 Pfam PF08447 PAS fold 198 269 2.1E-14 T 17-10-2018 IPR013655 PAS fold-3 GO:0005515 VI35_18310 154e9d3b0e54cd3ec687366f054c6b6d 743 SMART SM00086 407 447 20.0 T 17-10-2018 IPR001610 PAC motif VI35_18310 154e9d3b0e54cd3ec687366f054c6b6d 743 SMART SM00086 247 288 3.0E-4 T 17-10-2018 IPR001610 PAC motif VI35_18310 154e9d3b0e54cd3ec687366f054c6b6d 743 SUPERFAMILY SSF55785 444 566 1.08E-18 T 17-10-2018 IPR035965 PAS domain superfamily VI35_18310 154e9d3b0e54cd3ec687366f054c6b6d 743 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 458 574 1.1E-12 T 17-10-2018 IPR000014 PAS domain VI35_18310 154e9d3b0e54cd3ec687366f054c6b6d 743 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 337 450 1.8E-11 T 17-10-2018 IPR000014 PAS domain VI35_18310 154e9d3b0e54cd3ec687366f054c6b6d 743 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 171 295 2.5E-24 T 17-10-2018 IPR000014 PAS domain VI35_18310 154e9d3b0e54cd3ec687366f054c6b6d 743 SUPERFAMILY SSF55785 326 445 8.9E-18 T 17-10-2018 IPR035965 PAS domain superfamily VI35_18310 154e9d3b0e54cd3ec687366f054c6b6d 743 Gene3D G3DSA:3.30.450.20 452 576 6.0E-19 T 17-10-2018 VI35_18310 154e9d3b0e54cd3ec687366f054c6b6d 743 SUPERFAMILY SSF55781 25 165 7.85E-21 T 17-10-2018 VI35_18310 154e9d3b0e54cd3ec687366f054c6b6d 743 Pfam PF08448 PAS fold 466 569 1.2E-14 T 17-10-2018 IPR013656 PAS fold-4 VI35_18310 154e9d3b0e54cd3ec687366f054c6b6d 743 SMART SM00267 568 742 1.5E-60 T 17-10-2018 IPR000160 GGDEF domain VI35_18310 154e9d3b0e54cd3ec687366f054c6b6d 743 Pfam PF01590 GAF domain 24 152 1.1E-9 T 17-10-2018 IPR003018 GAF domain GO:0005515 VI35_18310 154e9d3b0e54cd3ec687366f054c6b6d 743 SMART SM00065 21 163 5.4E-5 T 17-10-2018 IPR003018 GAF domain GO:0005515 VI35_18310 154e9d3b0e54cd3ec687366f054c6b6d 743 Gene3D G3DSA:3.30.450.20 165 325 2.8E-25 T 17-10-2018 VI35_18310 154e9d3b0e54cd3ec687366f054c6b6d 743 SUPERFAMILY SSF55073 584 740 1.92E-44 T 17-10-2018 IPR029787 Nucleotide cyclase VI35_18310 154e9d3b0e54cd3ec687366f054c6b6d 743 SMART SM00091 459 525 2.1E-9 T 17-10-2018 IPR000014 PAS domain VI35_18310 154e9d3b0e54cd3ec687366f054c6b6d 743 SMART SM00091 174 240 3.6E-9 T 17-10-2018 IPR000014 PAS domain VI35_18310 154e9d3b0e54cd3ec687366f054c6b6d 743 SMART SM00091 339 405 3.0E-7 T 17-10-2018 IPR000014 PAS domain VI35_18310 154e9d3b0e54cd3ec687366f054c6b6d 743 Gene3D G3DSA:3.30.70.270 577 742 1.4E-53 T 17-10-2018 VI35_18310 154e9d3b0e54cd3ec687366f054c6b6d 743 SUPERFAMILY SSF55785 187 295 1.8E-22 T 17-10-2018 IPR035965 PAS domain superfamily VI35_18310 154e9d3b0e54cd3ec687366f054c6b6d 743 Pfam PF00989 PAS fold 340 444 4.0E-10 T 17-10-2018 IPR013767 PAS fold GO:0006355 VI35_18310 154e9d3b0e54cd3ec687366f054c6b6d 743 Gene3D G3DSA:3.30.450.40 14 164 4.3E-11 T 17-10-2018 IPR029016 GAF-like domain superfamily VI35_09665 0697e2468406bd72381e9b2a3898b8ff 336 Gene3D G3DSA:3.40.50.2300 75 306 5.4E-74 T 17-10-2018 VI35_09665 0697e2468406bd72381e9b2a3898b8ff 336 SUPERFAMILY SSF47413 1 59 5.63E-19 T 17-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VI35_09665 0697e2468406bd72381e9b2a3898b8ff 336 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 17-10-2018 VI35_09665 0697e2468406bd72381e9b2a3898b8ff 336 Gene3D G3DSA:1.10.260.40 3 59 2.9E-23 T 17-10-2018 VI35_09665 0697e2468406bd72381e9b2a3898b8ff 336 SMART SM00354 1 71 1.1E-34 T 17-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VI35_09665 0697e2468406bd72381e9b2a3898b8ff 336 Pfam PF13377 Periplasmic binding protein-like domain 172 330 2.3E-32 T 17-10-2018 VI35_09665 0697e2468406bd72381e9b2a3898b8ff 336 Gene3D G3DSA:3.40.50.2300 162 292 5.4E-74 T 17-10-2018 VI35_09665 0697e2468406bd72381e9b2a3898b8ff 336 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 2.0E-20 T 17-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VI35_09665 0697e2468406bd72381e9b2a3898b8ff 336 SUPERFAMILY SSF53822 60 332 6.48E-69 T 17-10-2018 IPR028082 Periplasmic binding protein-like I VI35_08025 629b15cc17c8e2dc2a9a48d1b7ccdcd4 116 Pfam PF01230 HIT domain 12 108 5.8E-28 T 17-10-2018 IPR001310 Histidine triad (HIT) protein VI35_08025 629b15cc17c8e2dc2a9a48d1b7ccdcd4 116 ProSitePatterns PS00892 HIT domain signature. 88 106 - T 17-10-2018 IPR019808 Histidine triad, conserved site VI35_08025 629b15cc17c8e2dc2a9a48d1b7ccdcd4 116 PRINTS PR00332 Histidine triad family signature 6 22 1.5E-18 T 17-10-2018 IPR001310 Histidine triad (HIT) protein VI35_08025 629b15cc17c8e2dc2a9a48d1b7ccdcd4 116 PRINTS PR00332 Histidine triad family signature 27 45 1.5E-18 T 17-10-2018 IPR001310 Histidine triad (HIT) protein VI35_08025 629b15cc17c8e2dc2a9a48d1b7ccdcd4 116 PRINTS PR00332 Histidine triad family signature 95 105 1.5E-18 T 17-10-2018 IPR001310 Histidine triad (HIT) protein VI35_08025 629b15cc17c8e2dc2a9a48d1b7ccdcd4 116 SUPERFAMILY SSF54197 2 112 4.02E-33 T 17-10-2018 IPR036265 HIT-like superfamily VI35_08025 629b15cc17c8e2dc2a9a48d1b7ccdcd4 116 Gene3D G3DSA:3.30.428.10 1 110 3.5E-34 T 17-10-2018 IPR036265 HIT-like superfamily VI35_13880 99907fc3b8cb500a81965f12ec09234d 386 SUPERFAMILY SSF53756 4 372 1.53E-99 T 17-10-2018 VI35_13880 99907fc3b8cb500a81965f12ec09234d 386 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 24 366 3.8E-96 T 17-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 VI35_13880 99907fc3b8cb500a81965f12ec09234d 386 Gene3D G3DSA:3.40.50.2000 5 363 3.7E-95 T 17-10-2018 VI35_13880 99907fc3b8cb500a81965f12ec09234d 386 Gene3D G3DSA:3.40.50.2000 190 353 3.7E-95 T 17-10-2018 VI35_13880 99907fc3b8cb500a81965f12ec09234d 386 TIGRFAM TIGR03568 NeuC_NnaA: UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing 4 364 9.1E-143 T 17-10-2018 IPR020004 UDP-N-acetylglucosamine 2-epimerase,UDP-hydrolysing GO:0004553|GO:0006047 Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 VI35_04205 9cff8155dfdebced70c846ab6d9ad3a2 657 SUPERFAMILY SSF141868 409 651 4.18E-86 T 17-10-2018 IPR035919 EAL domain superfamily VI35_04205 9cff8155dfdebced70c846ab6d9ad3a2 657 SMART SM00052 402 647 3.8E-106 T 17-10-2018 IPR001633 EAL domain VI35_04205 9cff8155dfdebced70c846ab6d9ad3a2 657 SMART SM00267 231 392 2.2E-19 T 17-10-2018 IPR000160 GGDEF domain VI35_04205 9cff8155dfdebced70c846ab6d9ad3a2 657 Pfam PF08448 PAS fold 15 121 4.8E-16 T 17-10-2018 IPR013656 PAS fold-4 VI35_04205 9cff8155dfdebced70c846ab6d9ad3a2 657 Pfam PF08448 PAS fold 138 232 8.3E-6 T 17-10-2018 IPR013656 PAS fold-4 VI35_04205 9cff8155dfdebced70c846ab6d9ad3a2 657 Gene3D G3DSA:3.30.70.270 237 404 9.9E-31 T 17-10-2018 VI35_04205 9cff8155dfdebced70c846ab6d9ad3a2 657 Pfam PF00563 EAL domain 409 642 1.0E-70 T 17-10-2018 IPR001633 EAL domain VI35_04205 9cff8155dfdebced70c846ab6d9ad3a2 657 SUPERFAMILY SSF55785 9 112 2.97E-13 T 17-10-2018 IPR035965 PAS domain superfamily VI35_04205 9cff8155dfdebced70c846ab6d9ad3a2 657 Pfam PF00990 Diguanylate cyclase, GGDEF domain 243 387 8.8E-25 T 17-10-2018 IPR000160 GGDEF domain VI35_04205 9cff8155dfdebced70c846ab6d9ad3a2 657 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 135 238 1.8E-6 T 17-10-2018 IPR000014 PAS domain VI35_04205 9cff8155dfdebced70c846ab6d9ad3a2 657 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 6 125 1.8E-7 T 17-10-2018 IPR000014 PAS domain VI35_04205 9cff8155dfdebced70c846ab6d9ad3a2 657 Gene3D G3DSA:3.30.450.20 4 128 3.8E-18 T 17-10-2018 VI35_04205 9cff8155dfdebced70c846ab6d9ad3a2 657 SUPERFAMILY SSF55073 247 391 5.34E-24 T 17-10-2018 IPR029787 Nucleotide cyclase VI35_04205 9cff8155dfdebced70c846ab6d9ad3a2 657 SMART SM00091 8 80 0.0012 T 17-10-2018 IPR000014 PAS domain VI35_04205 9cff8155dfdebced70c846ab6d9ad3a2 657 SMART SM00091 132 199 1.5 T 17-10-2018 IPR000014 PAS domain VI35_04205 9cff8155dfdebced70c846ab6d9ad3a2 657 Gene3D G3DSA:3.20.20.450 405 655 4.8E-92 T 17-10-2018 IPR035919 EAL domain superfamily VI35_04205 9cff8155dfdebced70c846ab6d9ad3a2 657 SUPERFAMILY SSF55785 117 229 2.62E-16 T 17-10-2018 IPR035965 PAS domain superfamily VI35_04205 9cff8155dfdebced70c846ab6d9ad3a2 657 Gene3D G3DSA:3.30.450.20 129 236 1.7E-10 T 17-10-2018 VI35_04205 9cff8155dfdebced70c846ab6d9ad3a2 657 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 242 387 1.7E-16 T 17-10-2018 IPR000160 GGDEF domain VI35_09620 081ca62a16cec4e3f1a83a542a641d83 163 Gene3D G3DSA:1.10.10.10 2 64 8.0E-30 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_09620 081ca62a16cec4e3f1a83a542a641d83 163 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 11 27 9.0E-23 T 17-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VI35_09620 081ca62a16cec4e3f1a83a542a641d83 163 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 38 57 9.0E-23 T 17-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VI35_09620 081ca62a16cec4e3f1a83a542a641d83 163 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 27 38 9.0E-23 T 17-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VI35_09620 081ca62a16cec4e3f1a83a542a641d83 163 SUPERFAMILY SSF46785 11 69 3.22E-19 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_09620 081ca62a16cec4e3f1a83a542a641d83 163 Pfam PF13412 Winged helix-turn-helix DNA-binding 11 58 5.8E-22 T 17-10-2018 VI35_09620 081ca62a16cec4e3f1a83a542a641d83 163 SMART SM00344 11 120 1.4E-54 T 17-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 VI35_09620 081ca62a16cec4e3f1a83a542a641d83 163 SUPERFAMILY SSF54909 73 156 1.88E-21 T 17-10-2018 IPR011008 Dimeric alpha-beta barrel VI35_09620 081ca62a16cec4e3f1a83a542a641d83 163 Gene3D G3DSA:3.30.70.920 65 148 5.2E-25 T 17-10-2018 VI35_09620 081ca62a16cec4e3f1a83a542a641d83 163 ProSitePatterns PS00519 AsnC-type HTH domain signature. 29 55 - T 17-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site VI35_09620 081ca62a16cec4e3f1a83a542a641d83 163 Pfam PF01037 Lrp/AsnC ligand binding domain 77 151 4.3E-24 T 17-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain VI35_00420 a067cf5604781a445e502ad5c44e6079 78 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 71 21.105 T 17-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_00420 a067cf5604781a445e502ad5c44e6079 78 Pfam PF00830 Ribosomal L28 family 3 61 9.4E-26 T 17-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_00420 a067cf5604781a445e502ad5c44e6079 78 SUPERFAMILY SSF143800 2 77 3.34E-29 T 17-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_00420 a067cf5604781a445e502ad5c44e6079 78 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 58 2.0E-28 T 17-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_00420 a067cf5604781a445e502ad5c44e6079 78 Gene3D G3DSA:2.30.170.40 2 78 3.2E-31 T 17-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_17980 d06c7402d6e015b1b3ec62f514c4ff24 196 Gene3D G3DSA:1.25.40.10 6 196 2.4E-22 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_17980 d06c7402d6e015b1b3ec62f514c4ff24 196 SUPERFAMILY SSF81901 58 195 2.88E-20 T 17-10-2018 VI35_17980 d06c7402d6e015b1b3ec62f514c4ff24 196 SMART SM00671 132 167 180.0 T 17-10-2018 IPR006597 Sel1-like repeat VI35_17980 d06c7402d6e015b1b3ec62f514c4ff24 196 SMART SM00671 96 131 0.0034 T 17-10-2018 IPR006597 Sel1-like repeat VI35_17980 d06c7402d6e015b1b3ec62f514c4ff24 196 SMART SM00671 60 95 0.29 T 17-10-2018 IPR006597 Sel1-like repeat VI35_00785 6a0a6923d6e073476b1f534e2c1612d6 280 Gene3D G3DSA:1.10.3720.10 10 264 6.7E-45 T 17-10-2018 IPR035906 MetI-like superfamily VI35_00785 6a0a6923d6e073476b1f534e2c1612d6 280 SUPERFAMILY SSF161098 3 261 3.46E-50 T 17-10-2018 IPR035906 MetI-like superfamily VI35_00785 6a0a6923d6e073476b1f534e2c1612d6 280 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 75 267 1.7E-15 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_17065 ad75f9c8948ded4dd04c7b84596512ae 334 SUPERFAMILY SSF55785 48 150 1.17E-21 T 17-10-2018 IPR035965 PAS domain superfamily VI35_17065 ad75f9c8948ded4dd04c7b84596512ae 334 SMART SM00267 148 310 1.4E-45 T 17-10-2018 IPR000160 GGDEF domain VI35_17065 ad75f9c8948ded4dd04c7b84596512ae 334 Gene3D G3DSA:3.30.450.20 39 152 6.8E-30 T 17-10-2018 VI35_17065 ad75f9c8948ded4dd04c7b84596512ae 334 Pfam PF00990 Diguanylate cyclase, GGDEF domain 159 304 1.3E-32 T 17-10-2018 IPR000160 GGDEF domain VI35_17065 ad75f9c8948ded4dd04c7b84596512ae 334 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 155 308 2.6E-28 T 17-10-2018 IPR000160 GGDEF domain VI35_17065 ad75f9c8948ded4dd04c7b84596512ae 334 SMART SM00086 105 148 1.1E-6 T 17-10-2018 IPR001610 PAC motif VI35_17065 ad75f9c8948ded4dd04c7b84596512ae 334 SUPERFAMILY SSF55073 164 311 6.59E-39 T 17-10-2018 IPR029787 Nucleotide cyclase VI35_17065 ad75f9c8948ded4dd04c7b84596512ae 334 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 49 155 3.7E-14 T 17-10-2018 IPR000014 PAS domain VI35_17065 ad75f9c8948ded4dd04c7b84596512ae 334 Gene3D G3DSA:3.30.70.270 153 312 2.5E-44 T 17-10-2018 VI35_17065 ad75f9c8948ded4dd04c7b84596512ae 334 Pfam PF08447 PAS fold 55 142 2.7E-24 T 17-10-2018 IPR013655 PAS fold-3 GO:0005515 VI35_07475 bd5995bf1afe91f42b1d0f4e0e7606d4 380 Gene3D G3DSA:3.90.1150.10 260 378 2.5E-32 T 17-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VI35_07475 bd5995bf1afe91f42b1d0f4e0e7606d4 380 TIGRFAM TIGR03588 PseC: UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase 1 378 4.2E-158 T 17-10-2018 IPR020026 UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase VI35_07475 bd5995bf1afe91f42b1d0f4e0e7606d4 380 SUPERFAMILY SSF53383 2 378 8.25E-109 T 17-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VI35_07475 bd5995bf1afe91f42b1d0f4e0e7606d4 380 Gene3D G3DSA:3.40.640.10 1 259 1.3E-91 T 17-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VI35_07475 bd5995bf1afe91f42b1d0f4e0e7606d4 380 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 9 374 4.1E-108 T 17-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase VI35_07475 bd5995bf1afe91f42b1d0f4e0e7606d4 380 PIRSF PIRSF000390 1 380 1.5E-102 T 17-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase VI35_17245 400933b92b3737717b72d30ac5184bf7 701 Gene3D G3DSA:3.30.450.20 60 283 9.1E-34 T 17-10-2018 VI35_17245 400933b92b3737717b72d30ac5184bf7 701 SMART SM00304 370 424 2.4E-7 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_17245 400933b92b3737717b72d30ac5184bf7 701 Pfam PF02743 Cache domain 47 286 2.3E-17 T 17-10-2018 IPR033479 Double Cache domain 1 VI35_17245 400933b92b3737717b72d30ac5184bf7 701 Gene3D G3DSA:3.30.450.20 73 238 9.1E-34 T 17-10-2018 VI35_17245 400933b92b3737717b72d30ac5184bf7 701 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 498 664 7.3E-43 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_17245 400933b92b3737717b72d30ac5184bf7 701 SMART SM00283 439 700 3.8E-60 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_17245 400933b92b3737717b72d30ac5184bf7 701 SUPERFAMILY SSF58104 392 700 3.4E-65 T 17-10-2018 VI35_17245 400933b92b3737717b72d30ac5184bf7 701 Gene3D G3DSA:1.10.287.950 369 701 1.0E-63 T 17-10-2018 VI35_20180 a3ea84b4b21225aecef4bd4c87fe8574 150 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 17-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site VI35_20180 a3ea84b4b21225aecef4bd4c87fe8574 150 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 129 4.3E-32 T 17-10-2018 IPR000944 Transcription regulator Rrf2-type VI35_20180 a3ea84b4b21225aecef4bd4c87fe8574 150 Pfam PF02082 Transcriptional regulator 1 80 8.2E-23 T 17-10-2018 IPR000944 Transcription regulator Rrf2-type VI35_20180 a3ea84b4b21225aecef4bd4c87fe8574 150 Gene3D G3DSA:1.10.10.10 1 137 1.3E-30 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_20180 a3ea84b4b21225aecef4bd4c87fe8574 150 SUPERFAMILY SSF46785 2 132 3.66E-30 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_01965 fea5b9650d1dc48b349b810de15e44b2 131 Hamap MF_00048 UPF0102 protein YraN [yraN]. 20 131 20.969 T 17-10-2018 IPR003509 Uncharacterised protein family UPF0102 VI35_01965 fea5b9650d1dc48b349b810de15e44b2 131 SUPERFAMILY SSF52980 22 127 2.68E-20 T 17-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 VI35_01965 fea5b9650d1dc48b349b810de15e44b2 131 Pfam PF02021 Uncharacterised protein family UPF0102 28 118 1.4E-27 T 17-10-2018 IPR003509 Uncharacterised protein family UPF0102 VI35_01965 fea5b9650d1dc48b349b810de15e44b2 131 Gene3D G3DSA:3.40.1350.10 27 131 6.7E-35 T 17-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 VI35_01965 fea5b9650d1dc48b349b810de15e44b2 131 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 21 131 2.0E-35 T 17-10-2018 IPR003509 Uncharacterised protein family UPF0102 VI35_01190 e85f8c861dfc09334b936e27e7533a76 336 Hamap MF_01206 Protein-methionine-sulfoxide reductase catalytic subunit MsrP [msrP]. 5 336 55.052 T 17-10-2018 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP GO:0016667|GO:0030091|GO:0043546|GO:0055114 VI35_01190 e85f8c861dfc09334b936e27e7533a76 336 Pfam PF00174 Oxidoreductase molybdopterin binding domain 110 269 5.5E-29 T 17-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 VI35_01190 e85f8c861dfc09334b936e27e7533a76 336 SUPERFAMILY SSF56524 78 332 1.57E-92 T 17-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 VI35_01190 e85f8c861dfc09334b936e27e7533a76 336 Gene3D G3DSA:3.90.420.10 70 336 5.0E-111 T 17-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 VI35_10100 4f82be7cf299b9f041f02837b1438c25 292 SUPERFAMILY SSF53850 88 288 7.29E-29 T 17-10-2018 VI35_10100 4f82be7cf299b9f041f02837b1438c25 292 SUPERFAMILY SSF46785 1 84 3.95E-21 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_10100 4f82be7cf299b9f041f02837b1438c25 292 Gene3D G3DSA:1.10.10.10 1 83 5.2E-27 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_10100 4f82be7cf299b9f041f02837b1438c25 292 Pfam PF03466 LysR substrate binding domain 87 288 3.9E-30 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_10100 4f82be7cf299b9f041f02837b1438c25 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 9.2E-18 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_10100 4f82be7cf299b9f041f02837b1438c25 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.3E-6 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_10100 4f82be7cf299b9f041f02837b1438c25 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.3E-6 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_10100 4f82be7cf299b9f041f02837b1438c25 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.3E-6 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_10100 4f82be7cf299b9f041f02837b1438c25 292 Gene3D G3DSA:3.40.190.290 91 291 7.8E-32 T 17-10-2018 VI35_04790 d450f0244981901990f0a571cc771f3c 324 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 318 1.8E-39 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_04790 d450f0244981901990f0a571cc771f3c 324 SUPERFAMILY SSF161098 90 303 1.96E-16 T 17-10-2018 IPR035906 MetI-like superfamily VI35_04790 d450f0244981901990f0a571cc771f3c 324 Gene3D G3DSA:1.10.3720.10 84 314 4.1E-20 T 17-10-2018 IPR035906 MetI-like superfamily VI35_12050 b71f295c2789621dd77e097e50f887af 556 Gene3D G3DSA:2.40.50.140 358 444 3.3E-25 T 17-10-2018 VI35_12050 b71f295c2789621dd77e097e50f887af 556 Gene3D G3DSA:2.40.50.140 98 181 9.4E-6 T 17-10-2018 VI35_12050 b71f295c2789621dd77e097e50f887af 556 Gene3D G3DSA:2.40.50.140 269 357 5.6E-29 T 17-10-2018 VI35_12050 b71f295c2789621dd77e097e50f887af 556 SUPERFAMILY SSF50249 255 369 1.43E-27 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_12050 b71f295c2789621dd77e097e50f887af 556 SUPERFAMILY SSF50249 88 174 6.19E-13 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_12050 b71f295c2789621dd77e097e50f887af 556 Gene3D G3DSA:2.40.50.140 445 528 7.1E-21 T 17-10-2018 VI35_12050 b71f295c2789621dd77e097e50f887af 556 Pfam PF00575 S1 RNA binding domain 449 520 1.7E-15 T 17-10-2018 IPR003029 S1 domain GO:0003676 VI35_12050 b71f295c2789621dd77e097e50f887af 556 Pfam PF00575 S1 RNA binding domain 278 347 4.1E-19 T 17-10-2018 IPR003029 S1 domain GO:0003676 VI35_12050 b71f295c2789621dd77e097e50f887af 556 Pfam PF00575 S1 RNA binding domain 190 260 1.2E-21 T 17-10-2018 IPR003029 S1 domain GO:0003676 VI35_12050 b71f295c2789621dd77e097e50f887af 556 Pfam PF00575 S1 RNA binding domain 361 434 3.7E-21 T 17-10-2018 IPR003029 S1 domain GO:0003676 VI35_12050 b71f295c2789621dd77e097e50f887af 556 Pfam PF00575 S1 RNA binding domain 19 84 6.9E-6 T 17-10-2018 IPR003029 S1 domain GO:0003676 VI35_12050 b71f295c2789621dd77e097e50f887af 556 Pfam PF00575 S1 RNA binding domain 105 171 2.1E-7 T 17-10-2018 IPR003029 S1 domain GO:0003676 VI35_12050 b71f295c2789621dd77e097e50f887af 556 PRINTS PR00681 Ribosomal protein S1 signature 155 175 1.4E-97 T 17-10-2018 VI35_12050 b71f295c2789621dd77e097e50f887af 556 PRINTS PR00681 Ribosomal protein S1 signature 330 348 1.4E-97 T 17-10-2018 VI35_12050 b71f295c2789621dd77e097e50f887af 556 PRINTS PR00681 Ribosomal protein S1 signature 21 39 1.4E-97 T 17-10-2018 VI35_12050 b71f295c2789621dd77e097e50f887af 556 PRINTS PR00681 Ribosomal protein S1 signature 126 143 1.4E-97 T 17-10-2018 VI35_12050 b71f295c2789621dd77e097e50f887af 556 PRINTS PR00681 Ribosomal protein S1 signature 39 53 1.4E-97 T 17-10-2018 VI35_12050 b71f295c2789621dd77e097e50f887af 556 PRINTS PR00681 Ribosomal protein S1 signature 108 124 1.4E-97 T 17-10-2018 VI35_12050 b71f295c2789621dd77e097e50f887af 556 PRINTS PR00681 Ribosomal protein S1 signature 212 233 1.4E-97 T 17-10-2018 VI35_12050 b71f295c2789621dd77e097e50f887af 556 PRINTS PR00681 Ribosomal protein S1 signature 290 309 1.4E-97 T 17-10-2018 VI35_12050 b71f295c2789621dd77e097e50f887af 556 PRINTS PR00681 Ribosomal protein S1 signature 84 103 1.4E-97 T 17-10-2018 VI35_12050 b71f295c2789621dd77e097e50f887af 556 SUPERFAMILY SSF50249 189 275 1.64E-26 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_12050 b71f295c2789621dd77e097e50f887af 556 PIRSF PIRSF002111 1 534 4.5E-216 T 17-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 VI35_12050 b71f295c2789621dd77e097e50f887af 556 Gene3D G3DSA:2.40.50.140 6 97 2.1E-17 T 17-10-2018 VI35_12050 b71f295c2789621dd77e097e50f887af 556 SUPERFAMILY SSF50249 2 112 3.12E-17 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_12050 b71f295c2789621dd77e097e50f887af 556 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 3 520 1.6E-233 T 17-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 VI35_12050 b71f295c2789621dd77e097e50f887af 556 SUPERFAMILY SSF50249 363 447 7.08E-22 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_12050 b71f295c2789621dd77e097e50f887af 556 SMART SM00316 362 434 9.7E-23 T 17-10-2018 IPR022967 RNA-binding domain, S1 VI35_12050 b71f295c2789621dd77e097e50f887af 556 SMART SM00316 19 87 1.4E-4 T 17-10-2018 IPR022967 RNA-binding domain, S1 VI35_12050 b71f295c2789621dd77e097e50f887af 556 SMART SM00316 103 171 7.4E-8 T 17-10-2018 IPR022967 RNA-binding domain, S1 VI35_12050 b71f295c2789621dd77e097e50f887af 556 SMART SM00316 449 520 2.7E-20 T 17-10-2018 IPR022967 RNA-binding domain, S1 VI35_12050 b71f295c2789621dd77e097e50f887af 556 SMART SM00316 190 260 7.0E-28 T 17-10-2018 IPR022967 RNA-binding domain, S1 VI35_12050 b71f295c2789621dd77e097e50f887af 556 SMART SM00316 275 347 6.9E-25 T 17-10-2018 IPR022967 RNA-binding domain, S1 VI35_12050 b71f295c2789621dd77e097e50f887af 556 Gene3D G3DSA:2.40.50.140 187 268 6.9E-28 T 17-10-2018 VI35_12050 b71f295c2789621dd77e097e50f887af 556 SUPERFAMILY SSF50249 429 540 4.92E-23 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_09245 24af3acc1d03f126b71de695dd5e3cd6 409 Gene3D G3DSA:3.40.190.10 137 386 3.9E-109 T 17-10-2018 VI35_09245 24af3acc1d03f126b71de695dd5e3cd6 409 PRINTS PR00181 Maltose binding protein signature 303 324 3.1E-10 T 17-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VI35_09245 24af3acc1d03f126b71de695dd5e3cd6 409 PRINTS PR00181 Maltose binding protein signature 361 380 3.1E-10 T 17-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VI35_09245 24af3acc1d03f126b71de695dd5e3cd6 409 PRINTS PR00181 Maltose binding protein signature 32 50 3.1E-10 T 17-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VI35_09245 24af3acc1d03f126b71de695dd5e3cd6 409 PRINTS PR00181 Maltose binding protein signature 149 168 3.1E-10 T 17-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VI35_09245 24af3acc1d03f126b71de695dd5e3cd6 409 PRINTS PR00181 Maltose binding protein signature 169 188 3.1E-10 T 17-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VI35_09245 24af3acc1d03f126b71de695dd5e3cd6 409 PRINTS PR00181 Maltose binding protein signature 128 147 3.1E-10 T 17-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VI35_09245 24af3acc1d03f126b71de695dd5e3cd6 409 SUPERFAMILY SSF53850 40 399 3.57E-88 T 17-10-2018 VI35_09245 24af3acc1d03f126b71de695dd5e3cd6 409 Gene3D G3DSA:3.40.190.10 43 361 3.9E-109 T 17-10-2018 VI35_09245 24af3acc1d03f126b71de695dd5e3cd6 409 Pfam PF13416 Bacterial extracellular solute-binding protein 45 345 3.5E-55 T 17-10-2018 IPR006059 Bacterial extracellular solute-binding protein VI35_01550 951948f1a986f91cbcc32e37577ceebc 265 Pfam PF00392 Bacterial regulatory proteins, gntR family 22 83 5.3E-18 T 17-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VI35_01550 951948f1a986f91cbcc32e37577ceebc 265 SMART SM00866 104 243 7.1E-31 T 17-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 VI35_01550 951948f1a986f91cbcc32e37577ceebc 265 SMART SM00345 24 83 1.4E-15 T 17-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VI35_01550 951948f1a986f91cbcc32e37577ceebc 265 SUPERFAMILY SSF46785 19 87 4.12E-19 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_01550 951948f1a986f91cbcc32e37577ceebc 265 Gene3D G3DSA:1.10.10.10 19 88 9.8E-21 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_01550 951948f1a986f91cbcc32e37577ceebc 265 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 57 73 3.1E-9 T 17-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VI35_01550 951948f1a986f91cbcc32e37577ceebc 265 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 43 57 3.1E-9 T 17-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VI35_01550 951948f1a986f91cbcc32e37577ceebc 265 Pfam PF07702 UTRA domain 105 242 1.3E-30 T 17-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 VI35_01550 951948f1a986f91cbcc32e37577ceebc 265 Gene3D G3DSA:3.40.1410.10 89 247 2.4E-33 T 17-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily VI35_01550 951948f1a986f91cbcc32e37577ceebc 265 SUPERFAMILY SSF64288 71 246 2.2E-39 T 17-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily VI35_12805 78b84490c352a697e2c844b0911dcc02 373 Gene3D G3DSA:3.40.50.720 1 277 1.7E-102 T 17-10-2018 VI35_12805 78b84490c352a697e2c844b0911dcc02 373 SUPERFAMILY SSF51735 93 257 1.62E-25 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_12805 78b84490c352a697e2c844b0911dcc02 373 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 9 273 7.0E-18 T 17-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 VI35_12805 78b84490c352a697e2c844b0911dcc02 373 Pfam PF11890 Domain of unknown function (DUF3410) 289 357 1.7E-21 T 17-10-2018 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain GO:0046983 KEGG: 00750+1.1.1.290 VI35_12805 78b84490c352a697e2c844b0911dcc02 373 Gene3D G3DSA:3.30.1370.170 293 373 6.6E-23 T 17-10-2018 IPR038251 PdxB, dimerisation domain superfamily KEGG: 00750+1.1.1.290 VI35_12805 78b84490c352a697e2c844b0911dcc02 373 SUPERFAMILY SSF52283 4 111 8.72E-22 T 17-10-2018 VI35_12805 78b84490c352a697e2c844b0911dcc02 373 Hamap MF_01825 Erythronate-4-phosphate dehydrogenase [pdxB]. 1 357 43.943 T 17-10-2018 IPR020921 Erythronate-4-phosphate dehydrogenase GO:0005737|GO:0008615|GO:0033711|GO:0055114 KEGG: 00750+1.1.1.290 VI35_12805 78b84490c352a697e2c844b0911dcc02 373 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 111 256 5.4E-22 T 17-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 VI35_12805 78b84490c352a697e2c844b0911dcc02 373 Gene3D G3DSA:3.40.50.720 93 257 1.7E-102 T 17-10-2018 VI35_05390 7f025fd7dd0336ed492f31b8268c04eb 360 Pfam PF01761 3-dehydroquinate synthase 65 323 2.4E-108 T 17-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 VI35_05390 7f025fd7dd0336ed492f31b8268c04eb 360 Gene3D G3DSA:1.20.1090.10 171 359 1.4E-65 T 17-10-2018 VI35_05390 7f025fd7dd0336ed492f31b8268c04eb 360 Gene3D G3DSA:3.40.50.1970 1 170 2.0E-66 T 17-10-2018 VI35_05390 7f025fd7dd0336ed492f31b8268c04eb 360 SUPERFAMILY SSF56796 4 355 4.06E-121 T 17-10-2018 VI35_05390 7f025fd7dd0336ed492f31b8268c04eb 360 PIRSF PIRSF001455 4 359 2.7E-107 T 17-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 VI35_05390 7f025fd7dd0336ed492f31b8268c04eb 360 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 1 354 72.825 T 17-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 VI35_05390 7f025fd7dd0336ed492f31b8268c04eb 360 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 13 353 4.7E-119 T 17-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 VI35_19390 366b7b2332ebc0f8208aed938622243b 195 TIGRFAM TIGR00172 maf: septum formation protein Maf 8 183 7.6E-52 T 17-10-2018 IPR003697 Maf-like protein GO:0047429 VI35_19390 366b7b2332ebc0f8208aed938622243b 195 Gene3D G3DSA:3.90.950.10 7 192 8.3E-65 T 17-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like VI35_19390 366b7b2332ebc0f8208aed938622243b 195 Pfam PF02545 Maf-like protein 8 189 1.5E-54 T 17-10-2018 IPR003697 Maf-like protein GO:0047429 VI35_19390 366b7b2332ebc0f8208aed938622243b 195 Hamap MF_00528 Septum formation protein Maf [maf]. 8 194 30.654 T 17-10-2018 IPR003697 Maf-like protein GO:0047429 VI35_19390 366b7b2332ebc0f8208aed938622243b 195 SUPERFAMILY SSF52972 7 188 4.25E-58 T 17-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like VI35_19390 366b7b2332ebc0f8208aed938622243b 195 PIRSF PIRSF006305 1 194 1.0E-48 T 17-10-2018 IPR003697 Maf-like protein GO:0047429 VI35_03670 ce2bcac34c46c36cc62812ffa1b3780c 181 Pfam PF13563 2'-5' RNA ligase superfamily 11 130 7.3E-11 T 17-10-2018 VI35_03670 ce2bcac34c46c36cc62812ffa1b3780c 181 SUPERFAMILY SSF55144 3 168 4.36E-38 T 17-10-2018 IPR009097 Cyclic phosphodiesterase VI35_03670 ce2bcac34c46c36cc62812ffa1b3780c 181 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 3 167 9.6E-30 T 17-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 VI35_03670 ce2bcac34c46c36cc62812ffa1b3780c 181 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 2 167 20.701 T 17-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 VI35_03670 ce2bcac34c46c36cc62812ffa1b3780c 181 Gene3D G3DSA:3.90.1140.10 2 168 5.5E-40 T 17-10-2018 VI35_02185 64e93f6122b731e089e05e5c75541911 315 Pfam PF00691 OmpA family 181 274 4.8E-13 T 17-10-2018 IPR006665 OmpA-like domain VI35_02185 64e93f6122b731e089e05e5c75541911 315 SUPERFAMILY SSF103088 166 282 1.24E-19 T 17-10-2018 IPR036737 OmpA-like domain superfamily VI35_02185 64e93f6122b731e089e05e5c75541911 315 Gene3D G3DSA:3.30.1330.60 132 312 6.2E-45 T 17-10-2018 IPR036737 OmpA-like domain superfamily VI35_02185 64e93f6122b731e089e05e5c75541911 315 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 11 63 4.4E-13 T 17-10-2018 IPR025713 Motility protein B, N-terminal domain VI35_00330 e2ea0e14a617c30f3c3f2871fc74db1a 621 Hamap MF_01531 Vitamin B12 transporter BtuB [btuB]. 2 621 33.754 T 17-10-2018 IPR010101 TonB-dependent vitamin B12 transporter BtuB GO:0015420|GO:0015889|GO:0016020 VI35_00330 e2ea0e14a617c30f3c3f2871fc74db1a 621 SUPERFAMILY SSF56935 27 619 1.3E-114 T 17-10-2018 VI35_00330 e2ea0e14a617c30f3c3f2871fc74db1a 621 Pfam PF00593 TonB dependent receptor 221 619 3.6E-54 T 17-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel VI35_00330 e2ea0e14a617c30f3c3f2871fc74db1a 621 Gene3D G3DSA:2.40.170.20 153 621 2.7E-122 T 17-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VI35_00330 e2ea0e14a617c30f3c3f2871fc74db1a 621 Pfam PF07715 TonB-dependent Receptor Plug Domain 41 145 3.2E-27 T 17-10-2018 IPR012910 TonB-dependent receptor, plug domain VI35_00330 e2ea0e14a617c30f3c3f2871fc74db1a 621 Gene3D G3DSA:2.170.130.10 24 150 6.5E-34 T 17-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily VI35_11445 92f9dc26ad406f4a6460c555bc8bc7e1 329 SUPERFAMILY SSF52440 4 114 6.04E-24 T 17-10-2018 IPR016185 Pre-ATP-grasp domain superfamily VI35_11445 92f9dc26ad406f4a6460c555bc8bc7e1 329 Gene3D G3DSA:3.30.470.20 104 319 2.5E-78 T 17-10-2018 VI35_11445 92f9dc26ad406f4a6460c555bc8bc7e1 329 Pfam PF01820 D-ala D-ala ligase N-terminus 6 105 1.4E-14 T 17-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VI35_11445 92f9dc26ad406f4a6460c555bc8bc7e1 329 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 5 328 2.4E-89 T 17-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VI35_11445 92f9dc26ad406f4a6460c555bc8bc7e1 329 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 82 93 - T 17-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VI35_11445 92f9dc26ad406f4a6460c555bc8bc7e1 329 PIRSF PIRSF039102 1 59 4.0E-4 T 17-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VI35_11445 92f9dc26ad406f4a6460c555bc8bc7e1 329 PIRSF PIRSF039102 60 329 4.9E-72 T 17-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VI35_11445 92f9dc26ad406f4a6460c555bc8bc7e1 329 Gene3D G3DSA:3.40.50.20 19 325 2.5E-78 T 17-10-2018 VI35_11445 92f9dc26ad406f4a6460c555bc8bc7e1 329 Pfam PF07478 D-ala D-ala ligase C-terminus 123 325 1.4E-51 T 17-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VI35_11445 92f9dc26ad406f4a6460c555bc8bc7e1 329 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 4 329 32.863 T 17-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VI35_11445 92f9dc26ad406f4a6460c555bc8bc7e1 329 Gene3D G3DSA:3.30.1490.20 131 198 2.5E-78 T 17-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 VI35_11445 92f9dc26ad406f4a6460c555bc8bc7e1 329 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 271 299 - T 17-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VI35_11445 92f9dc26ad406f4a6460c555bc8bc7e1 329 SUPERFAMILY SSF56059 115 326 1.58E-45 T 17-10-2018 VI35_05545 790a1dc9376b18865621f73746410f32 363 SUPERFAMILY SSF81271 279 359 4.58E-36 T 17-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 VI35_05545 790a1dc9376b18865621f73746410f32 363 Gene3D G3DSA:3.40.50.300 4 278 2.6E-151 T 17-10-2018 VI35_05545 790a1dc9376b18865621f73746410f32 363 Gene3D G3DSA:3.10.20.30 48 362 2.6E-151 T 17-10-2018 IPR012675 Beta-grasp domain superfamily VI35_05545 790a1dc9376b18865621f73746410f32 363 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 363 45.549 T 17-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 VI35_05545 790a1dc9376b18865621f73746410f32 363 Gene3D G3DSA:1.10.150.300 120 200 2.6E-151 T 17-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 VI35_05545 790a1dc9376b18865621f73746410f32 363 SUPERFAMILY SSF52540 3 301 1.51E-82 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_05545 790a1dc9376b18865621f73746410f32 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 4.3E-34 T 17-10-2018 IPR006073 GTP binding domain GO:0005525 VI35_05545 790a1dc9376b18865621f73746410f32 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 4.3E-34 T 17-10-2018 IPR006073 GTP binding domain GO:0005525 VI35_05545 790a1dc9376b18865621f73746410f32 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 4.3E-34 T 17-10-2018 IPR006073 GTP binding domain GO:0005525 VI35_05545 790a1dc9376b18865621f73746410f32 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 4.3E-34 T 17-10-2018 IPR006073 GTP binding domain GO:0005525 VI35_05545 790a1dc9376b18865621f73746410f32 363 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 363 2.5E-171 T 17-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 VI35_05545 790a1dc9376b18865621f73746410f32 363 Pfam PF06071 Protein of unknown function (DUF933) 279 362 1.5E-39 T 17-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 VI35_05545 790a1dc9376b18865621f73746410f32 363 Pfam PF01926 50S ribosome-binding GTPase 5 115 3.1E-21 T 17-10-2018 IPR006073 GTP binding domain GO:0005525 VI35_05545 790a1dc9376b18865621f73746410f32 363 PIRSF PIRSF006641 1 363 9.6E-157 T 17-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 VI35_06115 c4e6f738339a37b8531b423d7976cf87 393 SUPERFAMILY SSF53187 14 391 7.48E-65 T 17-10-2018 VI35_06115 c4e6f738339a37b8531b423d7976cf87 393 Pfam PF07687 Peptidase dimerisation domain 190 282 1.7E-11 T 17-10-2018 IPR011650 Peptidase M20, dimerisation domain VI35_06115 c4e6f738339a37b8531b423d7976cf87 393 Gene3D G3DSA:3.40.630.10 19 378 1.6E-98 T 17-10-2018 VI35_06115 c4e6f738339a37b8531b423d7976cf87 393 Pfam PF01546 Peptidase family M20/M25/M40 75 389 2.0E-24 T 17-10-2018 IPR002933 Peptidase M20 GO:0016787 VI35_06115 c4e6f738339a37b8531b423d7976cf87 393 Gene3D G3DSA:3.30.70.360 185 297 1.6E-98 T 17-10-2018 VI35_06115 c4e6f738339a37b8531b423d7976cf87 393 PIRSF PIRSF005962 4 393 3.0E-110 T 17-10-2018 IPR017439 Amidohydrolase GO:0016787 VI35_06115 c4e6f738339a37b8531b423d7976cf87 393 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 19 381 2.6E-82 T 17-10-2018 IPR017439 Amidohydrolase GO:0016787 VI35_06115 c4e6f738339a37b8531b423d7976cf87 393 SUPERFAMILY SSF55031 190 283 4.32E-21 T 17-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain VI35_09490 71ccb9686f1434e6f1239a33a557c474 151 Pfam PF03692 Putative zinc- or iron-chelating domain 30 98 2.4E-9 T 17-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein VI35_09490 71ccb9686f1434e6f1239a33a557c474 151 Hamap MF_00676 UPF0260 protein YcgN [ycgN]. 8 151 41.451 T 17-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 VI35_09490 71ccb9686f1434e6f1239a33a557c474 151 PIRSF PIRSF006173 4 151 5.3E-67 T 17-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 VI35_17750 64cc757c86129cbbf2ac04319fe457fc 128 Gene3D G3DSA:3.30.70.60 1 92 1.3E-32 T 17-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 VI35_17750 64cc757c86129cbbf2ac04319fe457fc 128 SUPERFAMILY SSF54995 1 103 6.67E-38 T 17-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_17750 64cc757c86129cbbf2ac04319fe457fc 128 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 21.887 T 17-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 VI35_17750 64cc757c86129cbbf2ac04319fe457fc 128 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 94 3.0E-38 T 17-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_17750 64cc757c86129cbbf2ac04319fe457fc 128 Pfam PF01250 Ribosomal protein S6 3 91 2.4E-28 T 17-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_18520 6b33dafad17aee813367f6eaedea3b86 445 Gene3D G3DSA:3.10.450.350 92 179 1.3E-18 T 17-10-2018 VI35_18520 6b33dafad17aee813367f6eaedea3b86 445 Gene3D G3DSA:3.10.450.350 184 287 5.4E-34 T 17-10-2018 VI35_18520 6b33dafad17aee813367f6eaedea3b86 445 Pfam PF04225 Opacity-associated protein A LysM-like domain 96 175 3.1E-9 T 17-10-2018 IPR007340 Opacity-associated protein A VI35_18520 6b33dafad17aee813367f6eaedea3b86 445 SUPERFAMILY SSF51261 168 414 7.32E-74 T 17-10-2018 IPR011055 Duplicated hybrid motif VI35_18520 6b33dafad17aee813367f6eaedea3b86 445 Pfam PF01551 Peptidase family M23 318 412 6.9E-32 T 17-10-2018 IPR016047 Peptidase M23 VI35_18520 6b33dafad17aee813367f6eaedea3b86 445 Gene3D G3DSA:2.70.70.10 288 418 2.2E-49 T 17-10-2018 IPR011055 Duplicated hybrid motif VI35_16725 6ab10e5cf162a79d5a062f633612fb74 177 SUPERFAMILY SSF55021 96 145 1.15E-6 T 17-10-2018 VI35_16725 6ab10e5cf162a79d5a062f633612fb74 177 Gene3D G3DSA:3.30.70.260 1 85 2.1E-23 T 17-10-2018 VI35_16725 6ab10e5cf162a79d5a062f633612fb74 177 PIRSF PIRSF028103 1 168 3.7E-45 T 17-10-2018 IPR016867 Glycine cleavage system transcriptional repressor GO:0006355 VI35_16725 6ab10e5cf162a79d5a062f633612fb74 177 Gene3D G3DSA:3.30.70.260 91 169 1.8E-8 T 17-10-2018 VI35_16725 6ab10e5cf162a79d5a062f633612fb74 177 Pfam PF13740 ACT domain 3 78 1.4E-24 T 17-10-2018 VI35_16725 6ab10e5cf162a79d5a062f633612fb74 177 SUPERFAMILY SSF55021 1 82 3.74E-16 T 17-10-2018 VI35_07200 bb3a2e21a215da3777cd1d011e395292 615 Pfam PF00884 Sulfatase 258 530 2.3E-28 T 17-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 VI35_07200 bb3a2e21a215da3777cd1d011e395292 615 SUPERFAMILY SSF53649 257 593 2.18E-47 T 17-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VI35_07200 bb3a2e21a215da3777cd1d011e395292 615 Gene3D G3DSA:3.40.720.10 250 561 4.4E-46 T 17-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VI35_07200 bb3a2e21a215da3777cd1d011e395292 615 Pfam PF11893 Domain of unknown function (DUF3413) 6 250 7.0E-99 T 17-10-2018 IPR024588 Inner membrane protein YejM, N-terminal VI35_07200 bb3a2e21a215da3777cd1d011e395292 615 PIRSF PIRSF004950 6 614 9.8E-207 T 17-10-2018 IPR012159 Inner membrane protein YejM VI35_05060 caa4ba4f20d2b25e9c15c166f96be774 637 Gene3D G3DSA:3.30.1390.30 86 161 1.6E-48 T 17-10-2018 VI35_05060 caa4ba4f20d2b25e9c15c166f96be774 637 Gene3D G3DSA:3.90.1310.10 65 249 1.6E-48 T 17-10-2018 VI35_05060 caa4ba4f20d2b25e9c15c166f96be774 637 Gene3D G3DSA:3.40.710.10 250 616 2.7E-95 T 17-10-2018 VI35_05060 caa4ba4f20d2b25e9c15c166f96be774 637 Hamap MF_02081 Peptidoglycan D,D-transpeptidase MrdA [mrdA]. 4 618 50.387 T 17-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VI35_05060 caa4ba4f20d2b25e9c15c166f96be774 637 Pfam PF00905 Penicillin binding protein transpeptidase domain 272 610 3.1E-74 T 17-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 VI35_05060 caa4ba4f20d2b25e9c15c166f96be774 637 Pfam PF03717 Penicillin-binding Protein dimerisation domain 66 240 4.0E-45 T 17-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 VI35_05060 caa4ba4f20d2b25e9c15c166f96be774 637 SUPERFAMILY SSF56519 57 253 3.14E-51 T 17-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 VI35_05060 caa4ba4f20d2b25e9c15c166f96be774 637 SUPERFAMILY SSF56601 255 614 1.33E-94 T 17-10-2018 IPR012338 Beta-lactamase/transpeptidase-like VI35_05060 caa4ba4f20d2b25e9c15c166f96be774 637 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 20 614 1.9E-237 T 17-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VI35_16315 391afaf7fc26f38396fd3149b7e02a25 299 Gene3D G3DSA:3.40.50.2300 159 294 8.4E-24 T 17-10-2018 VI35_16315 391afaf7fc26f38396fd3149b7e02a25 299 Pfam PF01584 CheW-like domain 11 146 2.2E-31 T 17-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VI35_16315 391afaf7fc26f38396fd3149b7e02a25 299 Gene3D G3DSA:2.40.50.180 28 143 2.5E-26 T 17-10-2018 VI35_16315 391afaf7fc26f38396fd3149b7e02a25 299 SUPERFAMILY SSF50341 8 148 2.49E-32 T 17-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 VI35_16315 391afaf7fc26f38396fd3149b7e02a25 299 Pfam PF00072 Response regulator receiver domain 172 286 2.2E-15 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_16315 391afaf7fc26f38396fd3149b7e02a25 299 PIRSF PIRSF002867 1 295 2.8E-83 T 17-10-2018 IPR024181 Chemotaxis response regulator CheV VI35_16315 391afaf7fc26f38396fd3149b7e02a25 299 SMART SM00448 170 287 7.4E-17 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_16315 391afaf7fc26f38396fd3149b7e02a25 299 SUPERFAMILY SSF52172 167 291 2.99E-24 T 17-10-2018 IPR011006 CheY-like superfamily VI35_16315 391afaf7fc26f38396fd3149b7e02a25 299 SMART SM00260 6 144 5.0E-19 T 17-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VI35_16315 391afaf7fc26f38396fd3149b7e02a25 299 Gene3D G3DSA:2.30.30.40 18 138 2.5E-26 T 17-10-2018 VI35_13785 748d9c80228a3a1f52caccae68f2074d 217 Hamap MF_01584 UPF0502 protein YceH [yceH]. 5 217 34.892 T 17-10-2018 IPR007432 Protein of unknown function DUF480 VI35_13785 748d9c80228a3a1f52caccae68f2074d 217 SUPERFAMILY SSF46785 3 84 5.71E-29 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_13785 748d9c80228a3a1f52caccae68f2074d 217 Pfam PF04337 Protein of unknown function, DUF480 6 156 1.8E-61 T 17-10-2018 IPR007432 Protein of unknown function DUF480 VI35_13785 748d9c80228a3a1f52caccae68f2074d 217 Gene3D G3DSA:1.10.10.10 1 89 1.6E-32 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_13785 748d9c80228a3a1f52caccae68f2074d 217 Gene3D G3DSA:1.10.10.10 95 173 2.6E-30 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_13785 748d9c80228a3a1f52caccae68f2074d 217 SUPERFAMILY SSF46785 90 172 6.35E-31 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_15545 261f76a71c930cb1b13fb7b0bad538c5 242 Gene3D G3DSA:3.40.50.10490 8 218 1.1E-96 T 17-10-2018 VI35_15545 261f76a71c930cb1b13fb7b0bad538c5 242 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 225 42.709 T 17-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_15545 261f76a71c930cb1b13fb7b0bad538c5 242 Gene3D G3DSA:1.10.287.610 103 150 1.1E-96 T 17-10-2018 VI35_15545 261f76a71c930cb1b13fb7b0bad538c5 242 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 158 182 - T 17-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 VI35_15545 261f76a71c930cb1b13fb7b0bad538c5 242 PRINTS PR00395 Ribosomal protein S2 signature 175 186 3.9E-39 T 17-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_15545 261f76a71c930cb1b13fb7b0bad538c5 242 PRINTS PR00395 Ribosomal protein S2 signature 37 46 3.9E-39 T 17-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_15545 261f76a71c930cb1b13fb7b0bad538c5 242 PRINTS PR00395 Ribosomal protein S2 signature 87 104 3.9E-39 T 17-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_15545 261f76a71c930cb1b13fb7b0bad538c5 242 PRINTS PR00395 Ribosomal protein S2 signature 196 210 3.9E-39 T 17-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_15545 261f76a71c930cb1b13fb7b0bad538c5 242 PRINTS PR00395 Ribosomal protein S2 signature 6 24 3.9E-39 T 17-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_15545 261f76a71c930cb1b13fb7b0bad538c5 242 PRINTS PR00395 Ribosomal protein S2 signature 158 175 3.9E-39 T 17-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_15545 261f76a71c930cb1b13fb7b0bad538c5 242 Pfam PF00318 Ribosomal protein S2 9 224 3.0E-98 T 17-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_15545 261f76a71c930cb1b13fb7b0bad538c5 242 SUPERFAMILY SSF52313 6 229 4.84E-100 T 17-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily VI35_15545 261f76a71c930cb1b13fb7b0bad538c5 242 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 6 17 - T 17-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 VI35_15545 261f76a71c930cb1b13fb7b0bad538c5 242 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 4 226 8.1E-112 T 17-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_07215 a87363cebdb2a903408c58ad290f1a83 393 SUPERFAMILY SSF53850 25 391 2.12E-91 T 17-10-2018 VI35_07215 a87363cebdb2a903408c58ad290f1a83 393 Gene3D G3DSA:3.40.190.10 47 354 9.7E-131 T 17-10-2018 VI35_07215 a87363cebdb2a903408c58ad290f1a83 393 Gene3D G3DSA:3.40.190.10 135 384 9.7E-131 T 17-10-2018 VI35_07215 a87363cebdb2a903408c58ad290f1a83 393 Pfam PF13416 Bacterial extracellular solute-binding protein 47 339 2.5E-43 T 17-10-2018 IPR006059 Bacterial extracellular solute-binding protein VI35_07215 a87363cebdb2a903408c58ad290f1a83 393 PRINTS PR00181 Maltose binding protein signature 354 373 2.6E-64 T 17-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VI35_07215 a87363cebdb2a903408c58ad290f1a83 393 PRINTS PR00181 Maltose binding protein signature 148 167 2.6E-64 T 17-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VI35_07215 a87363cebdb2a903408c58ad290f1a83 393 PRINTS PR00181 Maltose binding protein signature 230 249 2.6E-64 T 17-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VI35_07215 a87363cebdb2a903408c58ad290f1a83 393 PRINTS PR00181 Maltose binding protein signature 296 317 2.6E-64 T 17-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VI35_07215 a87363cebdb2a903408c58ad290f1a83 393 PRINTS PR00181 Maltose binding protein signature 168 187 2.6E-64 T 17-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VI35_07215 a87363cebdb2a903408c58ad290f1a83 393 PRINTS PR00181 Maltose binding protein signature 67 85 2.6E-64 T 17-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VI35_07215 a87363cebdb2a903408c58ad290f1a83 393 PRINTS PR00181 Maltose binding protein signature 33 51 2.6E-64 T 17-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VI35_07215 a87363cebdb2a903408c58ad290f1a83 393 PRINTS PR00181 Maltose binding protein signature 127 146 2.6E-64 T 17-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VI35_07215 a87363cebdb2a903408c58ad290f1a83 393 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 130 147 - T 17-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 VI35_09925 580864ae959bea7412f6c8785584c716 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 1.6E-33 T 17-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VI35_09925 580864ae959bea7412f6c8785584c716 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 17-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 VI35_09925 580864ae959bea7412f6c8785584c716 90 SMART SM00411 1 90 1.6E-44 T 17-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VI35_09925 580864ae959bea7412f6c8785584c716 90 SUPERFAMILY SSF47729 1 90 3.53E-32 T 17-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 VI35_09925 580864ae959bea7412f6c8785584c716 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 9.2E-20 T 17-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VI35_09925 580864ae959bea7412f6c8785584c716 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 9.2E-20 T 17-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VI35_09925 580864ae959bea7412f6c8785584c716 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 9.2E-20 T 17-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VI35_09925 580864ae959bea7412f6c8785584c716 90 Gene3D G3DSA:4.10.520.10 1 90 3.6E-36 T 17-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 VI35_00920 82f24c466d347d0ae3fcebacbd76eca0 581 Gene3D G3DSA:1.10.730.10 458 581 1.4E-34 T 17-10-2018 VI35_00920 82f24c466d347d0ae3fcebacbd76eca0 581 Hamap MF_00123 Arginine--tRNA ligase [argS]. 7 581 27.443 T 17-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 VI35_00920 82f24c466d347d0ae3fcebacbd76eca0 581 SUPERFAMILY SSF52374 113 457 1.17E-90 T 17-10-2018 VI35_00920 82f24c466d347d0ae3fcebacbd76eca0 581 SMART SM01016 3 91 1.2E-39 T 17-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 VI35_00920 82f24c466d347d0ae3fcebacbd76eca0 581 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 24 581 6.7E-184 T 17-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 VI35_00920 82f24c466d347d0ae3fcebacbd76eca0 581 SMART SM00836 464 581 8.5E-38 T 17-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 VI35_00920 82f24c466d347d0ae3fcebacbd76eca0 581 Gene3D G3DSA:3.40.50.620 111 457 2.2E-107 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_00920 82f24c466d347d0ae3fcebacbd76eca0 581 SUPERFAMILY SSF55190 5 102 1.09E-25 T 17-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 VI35_00920 82f24c466d347d0ae3fcebacbd76eca0 581 Gene3D G3DSA:3.30.1360.70 2 109 5.5E-30 T 17-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 VI35_00920 82f24c466d347d0ae3fcebacbd76eca0 581 Pfam PF00750 tRNA synthetases class I (R) 100 450 1.7E-158 T 17-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 VI35_00920 82f24c466d347d0ae3fcebacbd76eca0 581 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 4 91 2.7E-25 T 17-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 VI35_00920 82f24c466d347d0ae3fcebacbd76eca0 581 PRINTS PR01038 Arginyl-tRNA synthetase signature 157 170 2.3E-20 T 17-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 VI35_00920 82f24c466d347d0ae3fcebacbd76eca0 581 PRINTS PR01038 Arginyl-tRNA synthetase signature 133 149 2.3E-20 T 17-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 VI35_00920 82f24c466d347d0ae3fcebacbd76eca0 581 PRINTS PR01038 Arginyl-tRNA synthetase signature 118 133 2.3E-20 T 17-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 VI35_00920 82f24c466d347d0ae3fcebacbd76eca0 581 PRINTS PR01038 Arginyl-tRNA synthetase signature 307 328 2.3E-20 T 17-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 VI35_00920 82f24c466d347d0ae3fcebacbd76eca0 581 SUPERFAMILY SSF47323 458 581 5.43E-34 T 17-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_00920 82f24c466d347d0ae3fcebacbd76eca0 581 Pfam PF05746 DALR anticodon binding domain 464 581 1.3E-31 T 17-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 VI35_19270 b2132d526c87ca740780448a6a3813e3 222 SUPERFAMILY SSF52172 1 115 2.42E-38 T 17-10-2018 IPR011006 CheY-like superfamily VI35_19270 b2132d526c87ca740780448a6a3813e3 222 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 219 1.5E-17 T 17-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VI35_19270 b2132d526c87ca740780448a6a3813e3 222 SMART SM00862 145 219 9.2E-18 T 17-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VI35_19270 b2132d526c87ca740780448a6a3813e3 222 Gene3D G3DSA:3.40.50.2300 1 120 3.4E-36 T 17-10-2018 VI35_19270 b2132d526c87ca740780448a6a3813e3 222 SMART SM00448 1 112 2.1E-41 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_19270 b2132d526c87ca740780448a6a3813e3 222 Gene3D G3DSA:1.10.10.10 125 222 1.5E-23 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_19270 b2132d526c87ca740780448a6a3813e3 222 SUPERFAMILY SSF46894 122 220 3.12E-22 T 17-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VI35_19270 b2132d526c87ca740780448a6a3813e3 222 Pfam PF00072 Response regulator receiver domain 3 112 4.5E-28 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_07425 737274fee519e70106d2260fa7d88292 137 Gene3D G3DSA:1.20.120.340 1 128 1.2E-32 T 17-10-2018 VI35_07425 737274fee519e70106d2260fa7d88292 137 Pfam PF02561 Flagellar protein FliS 8 122 4.5E-29 T 17-10-2018 IPR003713 Flagellar protein FliS GO:0044780 VI35_07425 737274fee519e70106d2260fa7d88292 137 SUPERFAMILY SSF101116 8 127 9.16E-33 T 17-10-2018 IPR036584 Flagellar protein FliS superfamily GO:0044780 VI35_07425 737274fee519e70106d2260fa7d88292 137 TIGRFAM TIGR00208 fliS: flagellar protein FliS 4 122 1.9E-18 T 17-10-2018 IPR003713 Flagellar protein FliS GO:0044780 VI35_07425 737274fee519e70106d2260fa7d88292 137 PIRSF PIRSF039090 1 133 2.5E-44 T 17-10-2018 IPR003713 Flagellar protein FliS GO:0044780 VI35_07130 1dd2b102c709f82a55446d6b51f7de39 252 Pfam PF08220 DeoR-like helix-turn-helix domain 6 62 2.9E-22 T 17-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VI35_07130 1dd2b102c709f82a55446d6b51f7de39 252 SUPERFAMILY SSF46785 3 77 7.68E-17 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_07130 1dd2b102c709f82a55446d6b51f7de39 252 Gene3D G3DSA:3.30.750.70 68 134 2.4E-6 T 17-10-2018 VI35_07130 1dd2b102c709f82a55446d6b51f7de39 252 Gene3D G3DSA:1.10.10.10 1 59 8.9E-8 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_07130 1dd2b102c709f82a55446d6b51f7de39 252 SUPERFAMILY SSF100950 73 233 1.42E-28 T 17-10-2018 IPR037171 NagB/RpiA transferase-like VI35_07130 1dd2b102c709f82a55446d6b51f7de39 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.2E-11 T 17-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VI35_07130 1dd2b102c709f82a55446d6b51f7de39 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.2E-11 T 17-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VI35_07130 1dd2b102c709f82a55446d6b51f7de39 252 Pfam PF00455 DeoR C terminal sensor domain 75 232 1.9E-54 T 17-10-2018 IPR014036 DeoR C-terminal sensor domain VI35_07130 1dd2b102c709f82a55446d6b51f7de39 252 SMART SM01134 72 233 3.0E-72 T 17-10-2018 VI35_07130 1dd2b102c709f82a55446d6b51f7de39 252 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 17-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 VI35_07130 1dd2b102c709f82a55446d6b51f7de39 252 SMART SM00420 6 58 1.0E-22 T 17-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VI35_03460 a7c6ffa3239253e7bb621ac192ebf35f 145 TIGRFAM TIGR02043 ZntR: Zn(II)-responsive transcriptional regulator 1 131 3.1E-56 T 17-10-2018 IPR011788 Zn(II)-responsive transcriptional regulator GO:0003677|GO:0006351|GO:0008270 VI35_03460 a7c6ffa3239253e7bb621ac192ebf35f 145 ProSitePatterns PS00552 MerR-type HTH domain signature. 5 27 - T 17-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VI35_03460 a7c6ffa3239253e7bb621ac192ebf35f 145 Pfam PF13411 MerR HTH family regulatory protein 2 68 6.1E-20 T 17-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VI35_03460 a7c6ffa3239253e7bb621ac192ebf35f 145 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 14 27 1.2E-12 T 17-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VI35_03460 a7c6ffa3239253e7bb621ac192ebf35f 145 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 3 14 1.2E-12 T 17-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VI35_03460 a7c6ffa3239253e7bb621ac192ebf35f 145 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 38 58 1.2E-12 T 17-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VI35_03460 a7c6ffa3239253e7bb621ac192ebf35f 145 SMART SM00422 2 71 1.0E-32 T 17-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VI35_03460 a7c6ffa3239253e7bb621ac192ebf35f 145 SUPERFAMILY SSF46955 2 118 5.49E-34 T 17-10-2018 IPR009061 Putative DNA-binding domain superfamily VI35_03460 a7c6ffa3239253e7bb621ac192ebf35f 145 Gene3D G3DSA:1.10.1660.10 1 129 2.5E-37 T 17-10-2018 VI35_02285 14d77d9bf1855fb0f2cc0ca1c4947a96 906 SUPERFAMILY SSF52540 417 618 1.09E-60 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_02285 14d77d9bf1855fb0f2cc0ca1c4947a96 906 ProSitePatterns PS01312 SecA family signature. 500 515 - T 17-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 VI35_02285 14d77d9bf1855fb0f2cc0ca1c4947a96 906 SUPERFAMILY SSF52540 6 415 9.4E-85 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_02285 14d77d9bf1855fb0f2cc0ca1c4947a96 906 Gene3D G3DSA:3.40.50.300 417 620 3.1E-90 T 17-10-2018 VI35_02285 14d77d9bf1855fb0f2cc0ca1c4947a96 906 PRINTS PR00906 SecA protein signature 339 361 1.5E-73 T 17-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 VI35_02285 14d77d9bf1855fb0f2cc0ca1c4947a96 906 PRINTS PR00906 SecA protein signature 101 115 1.5E-73 T 17-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 VI35_02285 14d77d9bf1855fb0f2cc0ca1c4947a96 906 PRINTS PR00906 SecA protein signature 63 87 1.5E-73 T 17-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 VI35_02285 14d77d9bf1855fb0f2cc0ca1c4947a96 906 PRINTS PR00906 SecA protein signature 117 127 1.5E-73 T 17-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 VI35_02285 14d77d9bf1855fb0f2cc0ca1c4947a96 906 PRINTS PR00906 SecA protein signature 413 426 1.5E-73 T 17-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 VI35_02285 14d77d9bf1855fb0f2cc0ca1c4947a96 906 PRINTS PR00906 SecA protein signature 376 393 1.5E-73 T 17-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 VI35_02285 14d77d9bf1855fb0f2cc0ca1c4947a96 906 PRINTS PR00906 SecA protein signature 170 190 1.5E-73 T 17-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 VI35_02285 14d77d9bf1855fb0f2cc0ca1c4947a96 906 Pfam PF01043 SecA preprotein cross-linking domain 232 358 3.9E-37 T 17-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 VI35_02285 14d77d9bf1855fb0f2cc0ca1c4947a96 906 Pfam PF02810 SEC-C motif 886 904 1.1E-10 T 17-10-2018 IPR004027 SEC-C motif VI35_02285 14d77d9bf1855fb0f2cc0ca1c4947a96 906 SUPERFAMILY SSF81767 227 368 1.96E-42 T 17-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 VI35_02285 14d77d9bf1855fb0f2cc0ca1c4947a96 906 Pfam PF07517 SecA DEAD-like domain 7 402 3.6E-134 T 17-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 VI35_02285 14d77d9bf1855fb0f2cc0ca1c4947a96 906 SMART SM00957 6 402 0.0 T 17-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 VI35_02285 14d77d9bf1855fb0f2cc0ca1c4947a96 906 Gene3D G3DSA:1.10.3060.10 621 833 2.7E-79 T 17-10-2018 VI35_02285 14d77d9bf1855fb0f2cc0ca1c4947a96 906 Pfam PF07516 SecA Wing and Scaffold domain 617 830 9.7E-71 T 17-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 VI35_02285 14d77d9bf1855fb0f2cc0ca1c4947a96 906 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 832 20.069 T 17-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 VI35_02285 14d77d9bf1855fb0f2cc0ca1c4947a96 906 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 817 0.0 T 17-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 VI35_02285 14d77d9bf1855fb0f2cc0ca1c4947a96 906 SUPERFAMILY SSF81886 620 894 2.22E-84 T 17-10-2018 IPR036266 SecA, Wing/Scaffold superfamily VI35_02285 14d77d9bf1855fb0f2cc0ca1c4947a96 906 SMART SM00958 228 358 3.5E-80 T 17-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 VI35_02285 14d77d9bf1855fb0f2cc0ca1c4947a96 906 Gene3D G3DSA:3.90.1440.10 229 368 1.6E-176 T 17-10-2018 VI35_02285 14d77d9bf1855fb0f2cc0ca1c4947a96 906 Gene3D G3DSA:3.40.50.300 22 415 1.6E-176 T 17-10-2018 VI35_00895 f8981fd7bc9a73094d0b019e2a30a996 474 Gene3D G3DSA:1.20.1720.10 17 243 3.5E-47 T 17-10-2018 VI35_00895 f8981fd7bc9a73094d0b019e2a30a996 474 Gene3D G3DSA:1.20.1250.20 267 454 3.0E-12 T 17-10-2018 VI35_00895 f8981fd7bc9a73094d0b019e2a30a996 474 Pfam PF07690 Major Facilitator Superfamily 21 406 1.1E-49 T 17-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VI35_00895 f8981fd7bc9a73094d0b019e2a30a996 474 SUPERFAMILY SSF103473 11 450 1.31E-54 T 17-10-2018 IPR036259 MFS transporter superfamily VI35_00895 f8981fd7bc9a73094d0b019e2a30a996 474 PRINTS PR01036 Tetracycline resistance protein TetB signature 110 130 9.8E-12 T 17-10-2018 VI35_00895 f8981fd7bc9a73094d0b019e2a30a996 474 PRINTS PR01036 Tetracycline resistance protein TetB signature 140 164 9.8E-12 T 17-10-2018 VI35_00895 f8981fd7bc9a73094d0b019e2a30a996 474 PRINTS PR01036 Tetracycline resistance protein TetB signature 299 323 9.8E-12 T 17-10-2018 VI35_00895 f8981fd7bc9a73094d0b019e2a30a996 474 PRINTS PR01036 Tetracycline resistance protein TetB signature 397 416 9.8E-12 T 17-10-2018 VI35_05380 f43764f09ae61cb82469be8271a8a543 739 Pfam PF00263 Bacterial type II and III secretion system protein 577 735 3.5E-48 T 17-10-2018 IPR004846 Type II/III secretion system GO:0009306 VI35_05380 f43764f09ae61cb82469be8271a8a543 739 TIGRFAM TIGR02515 IV_pilus_PilQ: type IV pilus secretin PilQ 320 735 2.2E-161 T 17-10-2018 IPR013355 Type IV pilus secretin PilQ VI35_05380 f43764f09ae61cb82469be8271a8a543 739 Pfam PF03958 Bacterial type II/III secretion system short domain 419 483 7.1E-11 T 17-10-2018 IPR005644 NolW-like VI35_05380 f43764f09ae61cb82469be8271a8a543 739 Gene3D G3DSA:3.30.1370.120 393 484 1.1E-24 T 17-10-2018 IPR038591 NolW-like superfamily VI35_05380 f43764f09ae61cb82469be8271a8a543 739 PRINTS PR01032 Gene IV protein signature 557 580 1.9E-5 T 17-10-2018 VI35_05380 f43764f09ae61cb82469be8271a8a543 739 PRINTS PR01032 Gene IV protein signature 663 691 1.9E-5 T 17-10-2018 VI35_05380 f43764f09ae61cb82469be8271a8a543 739 PRINTS PR01032 Gene IV protein signature 716 738 1.9E-5 T 17-10-2018 VI35_05380 f43764f09ae61cb82469be8271a8a543 739 PRINTS PR00811 Bacterial general secretion pathway protein D signature 483 493 1.4E-20 T 17-10-2018 IPR001775 GspD/PilQ family VI35_05380 f43764f09ae61cb82469be8271a8a543 739 PRINTS PR00811 Bacterial general secretion pathway protein D signature 700 718 1.4E-20 T 17-10-2018 IPR001775 GspD/PilQ family VI35_05380 f43764f09ae61cb82469be8271a8a543 739 PRINTS PR00811 Bacterial general secretion pathway protein D signature 573 597 1.4E-20 T 17-10-2018 IPR001775 GspD/PilQ family VI35_05380 f43764f09ae61cb82469be8271a8a543 739 PRINTS PR00811 Bacterial general secretion pathway protein D signature 723 737 1.4E-20 T 17-10-2018 IPR001775 GspD/PilQ family VI35_05380 f43764f09ae61cb82469be8271a8a543 739 PRINTS PR00811 Bacterial general secretion pathway protein D signature 608 618 1.4E-20 T 17-10-2018 IPR001775 GspD/PilQ family VI35_05380 f43764f09ae61cb82469be8271a8a543 739 SMART SM00965 345 393 3.2E-8 T 17-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 VI35_05380 f43764f09ae61cb82469be8271a8a543 739 Gene3D G3DSA:3.55.50.30 311 392 1.0E-8 T 17-10-2018 VI35_05380 f43764f09ae61cb82469be8271a8a543 739 Gene3D G3DSA:2.60.40.3470 187 310 9.4E-23 T 17-10-2018 VI35_02090 a5f5a99fae2eb42edb107c9a9944a92b 244 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 120 5.3E-34 T 17-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G VI35_02090 a5f5a99fae2eb42edb107c9a9944a92b 244 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 168 237 4.0E-17 T 17-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain VI35_02090 a5f5a99fae2eb42edb107c9a9944a92b 244 TIGRFAM TIGR02490 flgF: flagellar basal-body rod protein FlgF 5 220 1.5E-54 T 17-10-2018 IPR012836 Flagellar basal-body rod FlgF GO:0030694|GO:0071973 VI35_02090 a5f5a99fae2eb42edb107c9a9944a92b 244 SUPERFAMILY SSF117143 78 199 5.36E-17 T 17-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like VI35_02090 a5f5a99fae2eb42edb107c9a9944a92b 244 Pfam PF00460 Flagella basal body rod protein 5 35 4.7E-7 T 17-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 VI35_21000 d169bf55ad4563add37438d50992526b 250 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 157 171 - T 17-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 VI35_21000 d169bf55ad4563add37438d50992526b 250 Pfam PF01209 ubiE/COQ5 methyltransferase family 19 249 3.5E-102 T 17-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 VI35_21000 d169bf55ad4563add37438d50992526b 250 SUPERFAMILY SSF53335 20 248 6.81E-50 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_21000 d169bf55ad4563add37438d50992526b 250 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 35 50 - T 17-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 VI35_21000 d169bf55ad4563add37438d50992526b 250 Gene3D G3DSA:3.40.50.150 30 250 1.2E-75 T 17-10-2018 VI35_21000 d169bf55ad4563add37438d50992526b 250 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 15 249 39.104 T 17-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 VI35_21000 d169bf55ad4563add37438d50992526b 250 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 24 249 3.3E-87 T 17-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 VI35_17365 aa836029d571138bc5ef71b317a054dc 378 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 7 360 3.2E-104 T 17-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 VI35_17365 aa836029d571138bc5ef71b317a054dc 378 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 1 378 6.8E-162 T 17-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 VI35_17365 aa836029d571138bc5ef71b317a054dc 378 PIRSF PIRSF000267 2 377 9.8E-120 T 17-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 VI35_01795 c0f6a46c7a8e3e7faba0fd227ab4b514 259 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 5 258 2.3E-102 T 17-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria VI35_01795 c0f6a46c7a8e3e7faba0fd227ab4b514 259 Pfam PF02405 Permease MlaE 44 255 3.9E-77 T 17-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 VI35_08720 eeae8a7323bd56f40570671871b2daa8 272 SUPERFAMILY SSF52540 3 230 8.88E-63 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_08720 eeae8a7323bd56f40570671871b2daa8 272 Gene3D G3DSA:3.40.50.300 2 254 1.2E-69 T 17-10-2018 VI35_08720 eeae8a7323bd56f40570671871b2daa8 272 SMART SM00382 27 230 1.1E-14 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_08720 eeae8a7323bd56f40570671871b2daa8 272 Pfam PF00005 ABC transporter 19 167 4.3E-33 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_08720 eeae8a7323bd56f40570671871b2daa8 272 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_15315 f568019e2a30dbd95df848ed60122920 668 SUPERFAMILY SSF52113 590 667 1.1E-19 T 17-10-2018 IPR036420 BRCT domain superfamily VI35_15315 f568019e2a30dbd95df848ed60122920 668 Hamap MF_01588 DNA ligase [ligA]. 2 666 52.341 T 17-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 VI35_15315 f568019e2a30dbd95df848ed60122920 668 Gene3D G3DSA:1.10.287.610 1 68 1.1E-24 T 17-10-2018 VI35_15315 f568019e2a30dbd95df848ed60122920 668 SUPERFAMILY SSF56091 2 315 6.24E-118 T 17-10-2018 VI35_15315 f568019e2a30dbd95df848ed60122920 668 PIRSF PIRSF001604 1 668 1.3E-243 T 17-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 VI35_15315 f568019e2a30dbd95df848ed60122920 668 Gene3D G3DSA:2.20.70.80 390 430 2.0E-19 T 17-10-2018 VI35_15315 f568019e2a30dbd95df848ed60122920 668 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 330 345 - T 17-10-2018 IPR033136 NAD-dependent DNA ligase, conserved site VI35_15315 f568019e2a30dbd95df848ed60122920 668 Gene3D G3DSA:3.40.50.10190 585 667 4.9E-27 T 17-10-2018 IPR036420 BRCT domain superfamily VI35_15315 f568019e2a30dbd95df848ed60122920 668 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 593 664 9.3E-13 T 17-10-2018 IPR001357 BRCT domain VI35_15315 f568019e2a30dbd95df848ed60122920 668 Gene3D G3DSA:2.40.50.140 317 389 4.9E-34 T 17-10-2018 VI35_15315 f568019e2a30dbd95df848ed60122920 668 Gene3D G3DSA:1.10.150.20 505 584 8.6E-29 T 17-10-2018 VI35_15315 f568019e2a30dbd95df848ed60122920 668 SMART SM00532 3 447 1.2E-268 T 17-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 VI35_15315 f568019e2a30dbd95df848ed60122920 668 SMART SM00278 445 464 40.0 T 17-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 VI35_15315 f568019e2a30dbd95df848ed60122920 668 SMART SM00278 543 562 1300.0 T 17-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 VI35_15315 f568019e2a30dbd95df848ed60122920 668 SMART SM00278 511 530 150.0 T 17-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 VI35_15315 f568019e2a30dbd95df848ed60122920 668 SMART SM00278 479 498 13.0 T 17-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 VI35_15315 f568019e2a30dbd95df848ed60122920 668 Gene3D G3DSA:3.30.470.90 69 316 6.8E-98 T 17-10-2018 VI35_15315 f568019e2a30dbd95df848ed60122920 668 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 11 662 5.2E-257 T 17-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 VI35_15315 f568019e2a30dbd95df848ed60122920 668 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 115 144 - T 17-10-2018 IPR018239 NAD-dependent DNA ligase, active site VI35_15315 f568019e2a30dbd95df848ed60122920 668 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 406 433 1.0E-10 T 17-10-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 VI35_15315 f568019e2a30dbd95df848ed60122920 668 SUPERFAMILY SSF47781 403 582 2.34E-59 T 17-10-2018 IPR010994 RuvA domain 2-like VI35_15315 f568019e2a30dbd95df848ed60122920 668 SUPERFAMILY SSF50249 316 398 2.57E-28 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_15315 f568019e2a30dbd95df848ed60122920 668 Pfam PF12826 Helix-hairpin-helix motif 509 571 2.5E-22 T 17-10-2018 VI35_15315 f568019e2a30dbd95df848ed60122920 668 Gene3D G3DSA:1.10.150.20 431 504 8.9E-29 T 17-10-2018 VI35_15315 f568019e2a30dbd95df848ed60122920 668 Pfam PF14520 Helix-hairpin-helix domain 446 498 1.2E-4 T 17-10-2018 VI35_15315 f568019e2a30dbd95df848ed60122920 668 SMART SM00292 592 667 8.0E-11 T 17-10-2018 IPR001357 BRCT domain VI35_15315 f568019e2a30dbd95df848ed60122920 668 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 321 397 1.7E-35 T 17-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 VI35_15315 f568019e2a30dbd95df848ed60122920 668 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 6 317 3.3E-126 T 17-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 VI35_16145 ca35e69233e230fea26beeaab405bb87 362 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 105 182 1.4E-30 T 17-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 VI35_16145 ca35e69233e230fea26beeaab405bb87 362 SUPERFAMILY SSF53901 4 323 3.3E-65 T 17-10-2018 IPR016039 Thiolase-like GO:0003824 VI35_16145 ca35e69233e230fea26beeaab405bb87 362 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 2 322 62.891 T 17-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 VI35_16145 ca35e69233e230fea26beeaab405bb87 362 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 3 322 1.9E-108 T 17-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 VI35_16145 ca35e69233e230fea26beeaab405bb87 362 Gene3D G3DSA:3.40.47.10 1 360 2.4E-139 T 17-10-2018 IPR016039 Thiolase-like GO:0003824 VI35_16145 ca35e69233e230fea26beeaab405bb87 362 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 233 322 2.9E-36 T 17-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 VI35_11135 912cda96eb3b6b497e169f8b68b274d1 201 SUPERFAMILY SSF81901 38 178 7.98E-31 T 17-10-2018 VI35_11135 912cda96eb3b6b497e169f8b68b274d1 201 SMART SM00671 99 134 2.0E-9 T 17-10-2018 IPR006597 Sel1-like repeat VI35_11135 912cda96eb3b6b497e169f8b68b274d1 201 SMART SM00671 135 170 0.09 T 17-10-2018 IPR006597 Sel1-like repeat VI35_11135 912cda96eb3b6b497e169f8b68b274d1 201 SMART SM00671 63 98 1.8E-6 T 17-10-2018 IPR006597 Sel1-like repeat VI35_11135 912cda96eb3b6b497e169f8b68b274d1 201 Pfam PF08238 Sel1 repeat 100 134 2.8E-10 T 17-10-2018 IPR006597 Sel1-like repeat VI35_11135 912cda96eb3b6b497e169f8b68b274d1 201 Pfam PF08238 Sel1 repeat 63 98 2.0E-5 T 17-10-2018 IPR006597 Sel1-like repeat VI35_11135 912cda96eb3b6b497e169f8b68b274d1 201 Pfam PF08238 Sel1 repeat 136 170 0.57 T 17-10-2018 IPR006597 Sel1-like repeat VI35_11135 912cda96eb3b6b497e169f8b68b274d1 201 Gene3D G3DSA:1.25.40.10 30 189 1.2E-35 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_16030 cfa0d76c1affd571815a6f90c47d4d04 302 Gene3D G3DSA:3.40.50.720 2 168 5.7E-39 T 17-10-2018 VI35_16030 cfa0d76c1affd571815a6f90c47d4d04 302 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 9 22 - T 17-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 VI35_16030 cfa0d76c1affd571815a6f90c47d4d04 302 SUPERFAMILY SSF51735 5 167 1.79E-30 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_16030 cfa0d76c1affd571815a6f90c47d4d04 302 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 170 289 2.9E-35 T 17-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 VI35_16030 cfa0d76c1affd571815a6f90c47d4d04 302 SUPERFAMILY SSF48179 168 292 8.84E-37 T 17-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VI35_16030 cfa0d76c1affd571815a6f90c47d4d04 302 Gene3D G3DSA:1.10.1040.10 169 294 1.9E-41 T 17-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 VI35_16030 cfa0d76c1affd571815a6f90c47d4d04 302 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 7 165 1.5E-34 T 17-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 VI35_16030 cfa0d76c1affd571815a6f90c47d4d04 302 PIRSF PIRSF000103 1 294 3.6E-58 T 17-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 VI35_13545 51b6875c751cb74cbc978927add067c4 345 SUPERFAMILY SSF55326 7 170 2.54E-53 T 17-10-2018 IPR036921 PurM-like, N-terminal domain superfamily VI35_13545 51b6875c751cb74cbc978927add067c4 345 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 7 334 4.4E-149 T 17-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 VI35_13545 51b6875c751cb74cbc978927add067c4 345 Pfam PF02769 AIR synthase related protein, C-terminal domain 177 340 2.3E-38 T 17-10-2018 IPR010918 PurM-like, C-terminal domain VI35_13545 51b6875c751cb74cbc978927add067c4 345 SUPERFAMILY SSF56042 171 342 1.64E-62 T 17-10-2018 IPR036676 PurM-like, C-terminal domain superfamily VI35_13545 51b6875c751cb74cbc978927add067c4 345 Pfam PF00586 AIR synthase related protein, N-terminal domain 59 164 1.1E-15 T 17-10-2018 IPR016188 PurM-like, N-terminal domain VI35_13545 51b6875c751cb74cbc978927add067c4 345 Gene3D G3DSA:3.30.1330.10 6 170 6.2E-68 T 17-10-2018 IPR036921 PurM-like, N-terminal domain superfamily VI35_13545 51b6875c751cb74cbc978927add067c4 345 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 7 344 46.97 T 17-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 VI35_13545 51b6875c751cb74cbc978927add067c4 345 Gene3D G3DSA:3.90.650.10 171 345 8.9E-71 T 17-10-2018 IPR036676 PurM-like, C-terminal domain superfamily VI35_15445 9a671d0c4fd103b14ffe60c2383db272 426 PIRSF PIRSF006060 1 411 4.3E-57 T 17-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VI35_15445 9a671d0c4fd103b14ffe60c2383db272 426 Pfam PF13520 Amino acid permease 8 367 2.1E-40 T 17-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VI35_15445 9a671d0c4fd103b14ffe60c2383db272 426 Gene3D G3DSA:1.20.1740.10 3 422 6.0E-60 T 17-10-2018 VI35_01530 d615419ebc4080fe4edcd4a3d3d96310 258 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 256 1.4E-10 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_01530 d615419ebc4080fe4edcd4a3d3d96310 258 SUPERFAMILY SSF161098 11 257 1.83E-40 T 17-10-2018 IPR035906 MetI-like superfamily VI35_01530 d615419ebc4080fe4edcd4a3d3d96310 258 Gene3D G3DSA:1.10.3720.10 10 255 2.9E-36 T 17-10-2018 IPR035906 MetI-like superfamily VI35_00020 7f7a713102afe459879e874c7bd1208d 803 Pfam PF00204 DNA gyrase B 221 390 8.8E-60 T 17-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VI35_00020 7f7a713102afe459879e874c7bd1208d 803 SUPERFAMILY SSF55874 6 218 6.65E-76 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_00020 7f7a713102afe459879e874c7bd1208d 803 PRINTS PR01159 DNA gyrase subunit B signature 756 768 1.1E-79 T 17-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 VI35_00020 7f7a713102afe459879e874c7bd1208d 803 PRINTS PR01159 DNA gyrase subunit B signature 470 479 1.1E-79 T 17-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 VI35_00020 7f7a713102afe459879e874c7bd1208d 803 PRINTS PR01159 DNA gyrase subunit B signature 181 196 1.1E-79 T 17-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 VI35_00020 7f7a713102afe459879e874c7bd1208d 803 PRINTS PR01159 DNA gyrase subunit B signature 6 16 1.1E-79 T 17-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 VI35_00020 7f7a713102afe459879e874c7bd1208d 803 PRINTS PR01159 DNA gyrase subunit B signature 360 374 1.1E-79 T 17-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 VI35_00020 7f7a713102afe459879e874c7bd1208d 803 PRINTS PR01159 DNA gyrase subunit B signature 374 394 1.1E-79 T 17-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 VI35_00020 7f7a713102afe459879e874c7bd1208d 803 PRINTS PR01159 DNA gyrase subunit B signature 196 209 1.1E-79 T 17-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 VI35_00020 7f7a713102afe459879e874c7bd1208d 803 PRINTS PR01159 DNA gyrase subunit B signature 312 328 1.1E-79 T 17-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 VI35_00020 7f7a713102afe459879e874c7bd1208d 803 PRINTS PR01159 DNA gyrase subunit B signature 220 242 1.1E-79 T 17-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 VI35_00020 7f7a713102afe459879e874c7bd1208d 803 PRINTS PR01159 DNA gyrase subunit B signature 772 788 1.1E-79 T 17-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 VI35_00020 7f7a713102afe459879e874c7bd1208d 803 Gene3D G3DSA:3.30.230.10 221 392 1.2E-75 T 17-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VI35_00020 7f7a713102afe459879e874c7bd1208d 803 ProSitePatterns PS00177 DNA topoisomerase II signature. 422 430 - T 17-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VI35_00020 7f7a713102afe459879e874c7bd1208d 803 Gene3D G3DSA:3.10.20.690 592 682 4.2E-25 T 17-10-2018 VI35_00020 7f7a713102afe459879e874c7bd1208d 803 SMART SM00387 32 176 3.7E-30 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_00020 7f7a713102afe459879e874c7bd1208d 803 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 3 803 106.539 T 17-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VI35_00020 7f7a713102afe459879e874c7bd1208d 803 SMART SM00433 36 796 1.8E-279 T 17-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VI35_00020 7f7a713102afe459879e874c7bd1208d 803 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 6 803 0.0 T 17-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VI35_00020 7f7a713102afe459879e874c7bd1208d 803 Gene3D G3DSA:3.30.565.10 2 220 2.7E-93 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_00020 7f7a713102afe459879e874c7bd1208d 803 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 731 792 3.4E-30 T 17-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 VI35_00020 7f7a713102afe459879e874c7bd1208d 803 PRINTS PR00418 DNA topoisomerase II family signature 114 128 1.8E-71 T 17-10-2018 VI35_00020 7f7a713102afe459879e874c7bd1208d 803 PRINTS PR00418 DNA topoisomerase II family signature 420 434 1.8E-71 T 17-10-2018 VI35_00020 7f7a713102afe459879e874c7bd1208d 803 PRINTS PR00418 DNA topoisomerase II family signature 71 84 1.8E-71 T 17-10-2018 VI35_00020 7f7a713102afe459879e874c7bd1208d 803 PRINTS PR00418 DNA topoisomerase II family signature 525 537 1.8E-71 T 17-10-2018 VI35_00020 7f7a713102afe459879e874c7bd1208d 803 PRINTS PR00418 DNA topoisomerase II family signature 505 522 1.8E-71 T 17-10-2018 VI35_00020 7f7a713102afe459879e874c7bd1208d 803 PRINTS PR00418 DNA topoisomerase II family signature 735 751 1.8E-71 T 17-10-2018 VI35_00020 7f7a713102afe459879e874c7bd1208d 803 PRINTS PR00418 DNA topoisomerase II family signature 36 51 1.8E-71 T 17-10-2018 VI35_00020 7f7a713102afe459879e874c7bd1208d 803 PRINTS PR00418 DNA topoisomerase II family signature 487 503 1.8E-71 T 17-10-2018 VI35_00020 7f7a713102afe459879e874c7bd1208d 803 PRINTS PR00418 DNA topoisomerase II family signature 268 281 1.8E-71 T 17-10-2018 VI35_00020 7f7a713102afe459879e874c7bd1208d 803 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 33 174 5.0E-22 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_00020 7f7a713102afe459879e874c7bd1208d 803 SUPERFAMILY SSF54211 221 391 5.5E-61 T 17-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VI35_00020 7f7a713102afe459879e874c7bd1208d 803 Gene3D G3DSA:3.40.50.670 683 803 1.1E-25 T 17-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VI35_00020 7f7a713102afe459879e874c7bd1208d 803 Gene3D G3DSA:3.40.50.670 398 570 8.4E-73 T 17-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VI35_00020 7f7a713102afe459879e874c7bd1208d 803 Pfam PF01751 Toprim domain 419 530 3.6E-18 T 17-10-2018 IPR006171 TOPRIM domain VI35_00020 7f7a713102afe459879e874c7bd1208d 803 SUPERFAMILY SSF56719 394 794 8.11E-86 T 17-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 VI35_13195 bf29469623f7f80131cf54ef838a3e66 124 Pfam PF01253 Translation initiation factor SUI1 50 117 2.0E-10 T 17-10-2018 IPR001950 SUI1 domain GO:0003743|GO:0006413 VI35_13195 bf29469623f7f80131cf54ef838a3e66 124 SUPERFAMILY SSF55159 23 120 4.58E-17 T 17-10-2018 IPR036877 SUI1 domain superfamily GO:0003743|GO:0006413 VI35_13195 bf29469623f7f80131cf54ef838a3e66 124 PIRSF PIRSF037511 9 124 6.1E-31 T 17-10-2018 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 VI35_13195 bf29469623f7f80131cf54ef838a3e66 124 Gene3D G3DSA:3.30.780.10 47 124 9.4E-25 T 17-10-2018 VI35_00765 5ba6f71fefc415bbdfeb44f0046a47a7 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 31 47 3.0E-66 T 17-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VI35_00765 5ba6f71fefc415bbdfeb44f0046a47a7 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 309 335 3.0E-66 T 17-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VI35_00765 5ba6f71fefc415bbdfeb44f0046a47a7 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 264 283 3.0E-66 T 17-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VI35_00765 5ba6f71fefc415bbdfeb44f0046a47a7 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 90 103 3.0E-66 T 17-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VI35_00765 5ba6f71fefc415bbdfeb44f0046a47a7 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 177 196 3.0E-66 T 17-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VI35_00765 5ba6f71fefc415bbdfeb44f0046a47a7 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 47 68 3.0E-66 T 17-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VI35_00765 5ba6f71fefc415bbdfeb44f0046a47a7 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 123 139 3.0E-66 T 17-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VI35_00765 5ba6f71fefc415bbdfeb44f0046a47a7 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 74 88 3.0E-66 T 17-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VI35_00765 5ba6f71fefc415bbdfeb44f0046a47a7 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 154 168 3.0E-66 T 17-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VI35_00765 5ba6f71fefc415bbdfeb44f0046a47a7 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 214 233 3.0E-66 T 17-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VI35_00765 5ba6f71fefc415bbdfeb44f0046a47a7 365 Gene3D G3DSA:3.40.190.10 132 360 2.7E-138 T 17-10-2018 VI35_00765 5ba6f71fefc415bbdfeb44f0046a47a7 365 Pfam PF13416 Bacterial extracellular solute-binding protein 42 328 7.0E-30 T 17-10-2018 IPR006059 Bacterial extracellular solute-binding protein VI35_00765 5ba6f71fefc415bbdfeb44f0046a47a7 365 Gene3D G3DSA:3.40.190.10 29 331 2.7E-138 T 17-10-2018 VI35_00765 5ba6f71fefc415bbdfeb44f0046a47a7 365 PIRSF PIRSF019574 1 365 3.7E-138 T 17-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VI35_00765 5ba6f71fefc415bbdfeb44f0046a47a7 365 SUPERFAMILY SSF53850 25 364 1.63E-101 T 17-10-2018 VI35_19080 ba20c3fe68f3c698e8ba839b5dd6a4a3 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 191 204 2.6E-26 T 17-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VI35_19080 ba20c3fe68f3c698e8ba839b5dd6a4a3 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 370 383 2.6E-26 T 17-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VI35_19080 ba20c3fe68f3c698e8ba839b5dd6a4a3 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 58 76 2.6E-26 T 17-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VI35_19080 ba20c3fe68f3c698e8ba839b5dd6a4a3 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 78 90 2.6E-26 T 17-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VI35_19080 ba20c3fe68f3c698e8ba839b5dd6a4a3 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 271 290 2.6E-26 T 17-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VI35_19080 ba20c3fe68f3c698e8ba839b5dd6a4a3 416 SUPERFAMILY SSF50621 254 414 2.05E-52 T 17-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 VI35_19080 ba20c3fe68f3c698e8ba839b5dd6a4a3 416 PRINTS PR01181 Diaminopimelate decarboxylase signature 76 93 4.9E-32 T 17-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VI35_19080 ba20c3fe68f3c698e8ba839b5dd6a4a3 416 PRINTS PR01181 Diaminopimelate decarboxylase signature 380 402 4.9E-32 T 17-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VI35_19080 ba20c3fe68f3c698e8ba839b5dd6a4a3 416 PRINTS PR01181 Diaminopimelate decarboxylase signature 299 317 4.9E-32 T 17-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VI35_19080 ba20c3fe68f3c698e8ba839b5dd6a4a3 416 PRINTS PR01181 Diaminopimelate decarboxylase signature 165 174 4.9E-32 T 17-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VI35_19080 ba20c3fe68f3c698e8ba839b5dd6a4a3 416 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 58 76 - T 17-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site VI35_19080 ba20c3fe68f3c698e8ba839b5dd6a4a3 416 Gene3D G3DSA:2.40.37.10 18 409 9.3E-152 T 17-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 VI35_19080 ba20c3fe68f3c698e8ba839b5dd6a4a3 416 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 6 412 1.5E-166 T 17-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VI35_19080 ba20c3fe68f3c698e8ba839b5dd6a4a3 416 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 16 413 41.917 T 17-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VI35_19080 ba20c3fe68f3c698e8ba839b5dd6a4a3 416 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 31 370 5.4E-23 T 17-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 VI35_19080 ba20c3fe68f3c698e8ba839b5dd6a4a3 416 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 36 281 2.3E-73 T 17-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 VI35_19080 ba20c3fe68f3c698e8ba839b5dd6a4a3 416 Gene3D G3DSA:3.20.20.10 35 276 9.3E-152 T 17-10-2018 IPR029066 PLP-binding barrel VI35_19080 ba20c3fe68f3c698e8ba839b5dd6a4a3 416 SUPERFAMILY SSF51419 27 283 2.62E-81 T 17-10-2018 IPR029066 PLP-binding barrel VI35_00005 aa72cd2255a81977dbfe7b9b4ccb8526 433 SMART SM00382 130 343 2.6E-7 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_00005 aa72cd2255a81977dbfe7b9b4ccb8526 433 Pfam PF00308 Bacterial dnaA protein 99 315 3.7E-99 T 17-10-2018 IPR013317 Chromosomal replication initiator protein DnaA VI35_00005 aa72cd2255a81977dbfe7b9b4ccb8526 433 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 229 256 1.1E-54 T 17-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like VI35_00005 aa72cd2255a81977dbfe7b9b4ccb8526 433 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 163 177 1.1E-54 T 17-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like VI35_00005 aa72cd2255a81977dbfe7b9b4ccb8526 433 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 195 209 1.1E-54 T 17-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like VI35_00005 aa72cd2255a81977dbfe7b9b4ccb8526 433 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 131 151 1.1E-54 T 17-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like VI35_00005 aa72cd2255a81977dbfe7b9b4ccb8526 433 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 391 410 1.1E-54 T 17-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like VI35_00005 aa72cd2255a81977dbfe7b9b4ccb8526 433 SMART SM00760 341 410 7.4E-45 T 17-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 VI35_00005 aa72cd2255a81977dbfe7b9b4ccb8526 433 SUPERFAMILY SSF52540 98 309 1.26E-46 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_00005 aa72cd2255a81977dbfe7b9b4ccb8526 433 ProSitePatterns PS01008 DnaA protein signature. 391 410 - T 17-10-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 VI35_00005 aa72cd2255a81977dbfe7b9b4ccb8526 433 Gene3D G3DSA:1.10.1750.10 340 433 3.7E-39 T 17-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 VI35_00005 aa72cd2255a81977dbfe7b9b4ccb8526 433 Gene3D G3DSA:1.10.8.60 264 334 2.1E-24 T 17-10-2018 VI35_00005 aa72cd2255a81977dbfe7b9b4ccb8526 433 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 1 431 6.5E-181 T 17-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 VI35_00005 aa72cd2255a81977dbfe7b9b4ccb8526 433 Gene3D G3DSA:3.30.300.180 1 84 3.4E-24 T 17-10-2018 IPR038454 DnaA, N-terminal domain superfamily VI35_00005 aa72cd2255a81977dbfe7b9b4ccb8526 433 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 342 410 3.5E-32 T 17-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 VI35_00005 aa72cd2255a81977dbfe7b9b4ccb8526 433 Pfam PF11638 DnaA N-terminal domain 1 39 2.6E-10 T 17-10-2018 IPR024633 DnaA N-terminal domain VI35_00005 aa72cd2255a81977dbfe7b9b4ccb8526 433 SUPERFAMILY SSF48295 330 432 2.01E-37 T 17-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 VI35_00005 aa72cd2255a81977dbfe7b9b4ccb8526 433 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 1 432 31.756 T 17-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 VI35_00005 aa72cd2255a81977dbfe7b9b4ccb8526 433 Gene3D G3DSA:3.40.50.300 85 262 1.2E-51 T 17-10-2018 VI35_06950 2773f4a1ba586a91dfabee1b6f15f646 574 Pfam PF01553 Acyltransferase 71 194 2.9E-7 T 17-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VI35_06950 2773f4a1ba586a91dfabee1b6f15f646 574 SMART SM00563 81 198 4.7E-9 T 17-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VI35_06950 2773f4a1ba586a91dfabee1b6f15f646 574 SUPERFAMILY SSF55729 307 515 2.86E-23 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_06950 2773f4a1ba586a91dfabee1b6f15f646 574 SUPERFAMILY SSF69593 45 244 2.88E-13 T 17-10-2018 VI35_06950 2773f4a1ba586a91dfabee1b6f15f646 574 Pfam PF13444 Acetyltransferase (GNAT) domain 324 424 7.3E-23 T 17-10-2018 VI35_15380 9de8867b78e7ca9a6b7c59639e519b5d 707 SUPERFAMILY SSF51445 206 677 5.62E-79 T 17-10-2018 IPR017853 Glycoside hydrolase superfamily VI35_15380 9de8867b78e7ca9a6b7c59639e519b5d 707 Pfam PF00128 Alpha amylase, catalytic domain 454 626 8.3E-11 T 17-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VI35_15380 9de8867b78e7ca9a6b7c59639e519b5d 707 Pfam PF00128 Alpha amylase, catalytic domain 251 398 5.3E-34 T 17-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VI35_15380 9de8867b78e7ca9a6b7c59639e519b5d 707 Gene3D G3DSA:3.20.20.80 451 675 9.4E-34 T 17-10-2018 VI35_15380 9de8867b78e7ca9a6b7c59639e519b5d 707 Gene3D G3DSA:3.20.20.80 202 433 2.4E-57 T 17-10-2018 VI35_15380 9de8867b78e7ca9a6b7c59639e519b5d 707 SMART SM00642 218 668 7.9E-73 T 17-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VI35_15380 9de8867b78e7ca9a6b7c59639e519b5d 707 PIRSF PIRSF036917 15 706 1.8E-275 T 17-10-2018 IPR014635 Alpha-amylase, MalS type GO:0004556|GO:0005509|GO:0030980|GO:0042597|GO:0051692 KEGG: 00500+3.2.1.1 VI35_15770 babdf9c898a201915ebcb3b83aff75ea 268 Pfam PF03502 Nucleoside-specific channel-forming protein, Tsx 32 268 2.9E-89 T 17-10-2018 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 VI35_15770 babdf9c898a201915ebcb3b83aff75ea 268 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 59 83 6.6E-5 T 17-10-2018 IPR003055 Nucleoside-specific channel-forming protein Tsx GO:0005337|GO:0009279 VI35_15770 babdf9c898a201915ebcb3b83aff75ea 268 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 176 199 6.6E-5 T 17-10-2018 IPR003055 Nucleoside-specific channel-forming protein Tsx GO:0005337|GO:0009279 VI35_15770 babdf9c898a201915ebcb3b83aff75ea 268 Gene3D G3DSA:2.40.230.20 25 268 8.9E-70 T 17-10-2018 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily GO:0009279 VI35_15770 babdf9c898a201915ebcb3b83aff75ea 268 SUPERFAMILY SSF111364 32 268 2.35E-76 T 17-10-2018 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily GO:0009279 VI35_18510 549af6dc968a329a2460729efc498db0 193 Gene3D G3DSA:1.20.1590.10 2 193 5.4E-66 T 17-10-2018 IPR023381 YP001051499.1-like domain superfamily VI35_18510 549af6dc968a329a2460729efc498db0 193 Pfam PF04222 Protein of unknown function (DUF416) 6 190 1.1E-67 T 17-10-2018 IPR007338 Protein of unknown function DUF416 VI35_20225 d21d895b22c82c0e076040c8a71236f2 267 Gene3D G3DSA:1.10.10.60 222 266 1.0E-13 T 17-10-2018 VI35_20225 d21d895b22c82c0e076040c8a71236f2 267 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 216 257 - T 17-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VI35_20225 d21d895b22c82c0e076040c8a71236f2 267 Gene3D G3DSA:1.10.10.60 169 221 1.7E-14 T 17-10-2018 VI35_20225 d21d895b22c82c0e076040c8a71236f2 267 SUPERFAMILY SSF51215 22 152 3.92E-17 T 17-10-2018 IPR037923 Transcription regulator HTH-like VI35_20225 d21d895b22c82c0e076040c8a71236f2 267 Pfam PF12833 Helix-turn-helix domain 185 263 6.0E-24 T 17-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VI35_20225 d21d895b22c82c0e076040c8a71236f2 267 Pfam PF02311 AraC-like ligand binding domain 17 147 3.8E-16 T 17-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 VI35_20225 d21d895b22c82c0e076040c8a71236f2 267 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 230 245 2.8E-7 T 17-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VI35_20225 d21d895b22c82c0e076040c8a71236f2 267 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 245 261 2.8E-7 T 17-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VI35_20225 d21d895b22c82c0e076040c8a71236f2 267 SMART SM00342 179 261 2.5E-28 T 17-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VI35_20225 d21d895b22c82c0e076040c8a71236f2 267 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 164 208 - T 17-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VI35_20225 d21d895b22c82c0e076040c8a71236f2 267 SUPERFAMILY SSF46689 215 264 6.81E-12 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_20225 d21d895b22c82c0e076040c8a71236f2 267 SUPERFAMILY SSF46689 162 213 1.51E-10 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_04745 a25986e755d15b1ca3ffc87b149093ac 369 SUPERFAMILY SSF53597 149 365 3.6E-56 T 17-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 VI35_04745 a25986e755d15b1ca3ffc87b149093ac 369 Gene3D G3DSA:3.40.430.10 144 368 9.8E-73 T 17-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 VI35_04745 a25986e755d15b1ca3ffc87b149093ac 369 Pfam PF01872 RibD C-terminal domain 150 362 5.9E-51 T 17-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 VI35_04745 a25986e755d15b1ca3ffc87b149093ac 369 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 149 367 7.0E-60 T 17-10-2018 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 VI35_04745 a25986e755d15b1ca3ffc87b149093ac 369 Gene3D G3DSA:3.40.140.10 2 143 8.5E-45 T 17-10-2018 VI35_04745 a25986e755d15b1ca3ffc87b149093ac 369 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 5 102 8.4E-19 T 17-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain VI35_04745 a25986e755d15b1ca3ffc87b149093ac 369 PIRSF PIRSF006769 1 369 2.6E-122 T 17-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 VI35_04745 a25986e755d15b1ca3ffc87b149093ac 369 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 53 91 - T 17-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 VI35_04745 a25986e755d15b1ca3ffc87b149093ac 369 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 10 364 1.8E-124 T 17-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 VI35_04745 a25986e755d15b1ca3ffc87b149093ac 369 SUPERFAMILY SSF53927 6 147 2.13E-46 T 17-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 VI35_03035 0f727ca81761721bbbc68ee531792904 411 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 10 18 - T 17-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 VI35_03035 0f727ca81761721bbbc68ee531792904 411 Hamap MF_00005 Argininosuccinate synthase [argG]. 4 400 50.555 T 17-10-2018 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 VI35_03035 0f727ca81761721bbbc68ee531792904 411 Gene3D G3DSA:3.90.1260.10 177 404 1.6E-83 T 17-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 VI35_03035 0f727ca81761721bbbc68ee531792904 411 Gene3D G3DSA:3.40.50.620 5 175 1.7E-65 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_03035 0f727ca81761721bbbc68ee531792904 411 SUPERFAMILY SSF52402 5 168 2.09E-44 T 17-10-2018 VI35_03035 0f727ca81761721bbbc68ee531792904 411 SUPERFAMILY SSF69864 174 400 1.01E-83 T 17-10-2018 VI35_03035 0f727ca81761721bbbc68ee531792904 411 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 119 130 - T 17-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 VI35_03035 0f727ca81761721bbbc68ee531792904 411 Pfam PF00764 Arginosuccinate synthase 8 394 7.7E-144 T 17-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 VI35_03035 0f727ca81761721bbbc68ee531792904 411 TIGRFAM TIGR00032 argG: argininosuccinate synthase 6 397 2.4E-132 T 17-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 VI35_15255 adc3243b26d3a66996b065a9f2070f97 302 Pfam PF03466 LysR substrate binding domain 90 285 4.5E-25 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_15255 adc3243b26d3a66996b065a9f2070f97 302 Gene3D G3DSA:1.10.10.10 7 88 8.5E-18 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_15255 adc3243b26d3a66996b065a9f2070f97 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 2.6E-16 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_15255 adc3243b26d3a66996b065a9f2070f97 302 SUPERFAMILY SSF46785 7 113 3.05E-18 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_15255 adc3243b26d3a66996b065a9f2070f97 302 SUPERFAMILY SSF53850 91 290 4.89E-31 T 17-10-2018 VI35_15255 adc3243b26d3a66996b065a9f2070f97 302 Gene3D G3DSA:3.40.190.290 93 287 5.5E-30 T 17-10-2018 VI35_18065 378a8cf9362ed654c570e81d88063353 318 Gene3D G3DSA:1.10.10.10 4 90 7.0E-21 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_18065 378a8cf9362ed654c570e81d88063353 318 Gene3D G3DSA:3.40.190.10 92 293 1.2E-64 T 17-10-2018 VI35_18065 378a8cf9362ed654c570e81d88063353 318 SUPERFAMILY SSF53850 90 298 8.69E-51 T 17-10-2018 VI35_18065 378a8cf9362ed654c570e81d88063353 318 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 3.5E-18 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_18065 378a8cf9362ed654c570e81d88063353 318 Pfam PF03466 LysR substrate binding domain 89 295 1.6E-49 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_18065 378a8cf9362ed654c570e81d88063353 318 SUPERFAMILY SSF46785 5 88 2.56E-18 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_18065 378a8cf9362ed654c570e81d88063353 318 Gene3D G3DSA:3.40.190.10 164 266 1.2E-64 T 17-10-2018 VI35_15155 bcce770b7c855b96ade5d519696f62ae 293 Gene3D G3DSA:3.40.50.300 1 224 6.3E-63 T 17-10-2018 VI35_15155 bcce770b7c855b96ade5d519696f62ae 293 SMART SM00382 29 203 1.8E-14 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_15155 bcce770b7c855b96ade5d519696f62ae 293 Pfam PF00005 ABC transporter 21 155 1.7E-25 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_15155 bcce770b7c855b96ade5d519696f62ae 293 SUPERFAMILY SSF52540 4 217 3.75E-60 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_15155 bcce770b7c855b96ade5d519696f62ae 293 ProSitePatterns PS00211 ABC transporters family signature. 128 142 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_10750 b5d8b102a9e596b1ccddb355951541b2 193 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 2 190 2.4E-63 T 17-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 VI35_10750 b5d8b102a9e596b1ccddb355951541b2 193 Gene3D G3DSA:2.70.40.10 1 193 3.7E-49 T 17-10-2018 IPR036157 dUTPase-like superfamily VI35_10750 b5d8b102a9e596b1ccddb355951541b2 193 Hamap MF_00146 dCTP deaminase [dcd]. 1 190 32.9 T 17-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 VI35_10750 b5d8b102a9e596b1ccddb355951541b2 193 SUPERFAMILY SSF51283 1 193 2.22E-56 T 17-10-2018 IPR036157 dUTPase-like superfamily VI35_10750 b5d8b102a9e596b1ccddb355951541b2 193 Pfam PF00692 dUTPase 79 184 4.7E-7 T 17-10-2018 IPR029054 dUTPase-like VI35_04620 7a5463a613d8f6d5b1133f24a715b640 477 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 293 450 4.3E-46 T 17-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_04620 7a5463a613d8f6d5b1133f24a715b640 477 Gene3D G3DSA:3.30.360.10 287 452 6.3E-116 T 17-10-2018 VI35_04620 7a5463a613d8f6d5b1133f24a715b640 477 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 129 462 7.3E-113 T 17-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_04620 7a5463a613d8f6d5b1133f24a715b640 477 SUPERFAMILY SSF51735 128 304 3.8E-45 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_04620 7a5463a613d8f6d5b1133f24a715b640 477 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 282 300 7.6E-18 T 17-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_04620 7a5463a613d8f6d5b1133f24a715b640 477 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 309 325 7.6E-18 T 17-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_04620 7a5463a613d8f6d5b1133f24a715b640 477 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 365 382 7.6E-18 T 17-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_04620 7a5463a613d8f6d5b1133f24a715b640 477 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 246 259 7.6E-18 T 17-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_04620 7a5463a613d8f6d5b1133f24a715b640 477 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 128 238 1.6E-21 T 17-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_04620 7a5463a613d8f6d5b1133f24a715b640 477 SUPERFAMILY SSF55347 288 451 5.61E-53 T 17-10-2018 VI35_04620 7a5463a613d8f6d5b1133f24a715b640 477 Gene3D G3DSA:3.40.50.720 129 463 6.3E-116 T 17-10-2018 VI35_04620 7a5463a613d8f6d5b1133f24a715b640 477 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 286 293 - T 17-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_04620 7a5463a613d8f6d5b1133f24a715b640 477 SMART SM00846 127 288 1.7E-54 T 17-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_14335 e9963b71e3743741f0603806080804a0 191 Gene3D G3DSA:3.90.20.20 25 131 1.1E-32 T 17-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 VI35_14335 e9963b71e3743741f0603806080804a0 191 SUPERFAMILY SSF51064 135 189 4.58E-20 T 17-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 VI35_14335 e9963b71e3743741f0603806080804a0 191 Pfam PF01025 GrpE 25 188 1.4E-53 T 17-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 VI35_14335 e9963b71e3743741f0603806080804a0 191 ProSitePatterns PS01071 grpE protein signature. 143 186 - T 17-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 VI35_14335 e9963b71e3743741f0603806080804a0 191 Gene3D G3DSA:2.30.22.10 132 188 1.5E-26 T 17-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 VI35_14335 e9963b71e3743741f0603806080804a0 191 PRINTS PR00773 GrpE protein signature 140 155 8.6E-29 T 17-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 VI35_14335 e9963b71e3743741f0603806080804a0 191 PRINTS PR00773 GrpE protein signature 167 186 8.6E-29 T 17-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 VI35_14335 e9963b71e3743741f0603806080804a0 191 PRINTS PR00773 GrpE protein signature 85 100 8.6E-29 T 17-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 VI35_14335 e9963b71e3743741f0603806080804a0 191 PRINTS PR00773 GrpE protein signature 57 73 8.6E-29 T 17-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 VI35_14335 e9963b71e3743741f0603806080804a0 191 SUPERFAMILY SSF58014 34 132 4.45E-28 T 17-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 VI35_14335 e9963b71e3743741f0603806080804a0 191 Hamap MF_01151 Protein GrpE [grpE]. 4 188 21.408 T 17-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 VI35_00935 787b9b3ffebd0130cb66be1c902db69c 221 SUPERFAMILY SSF51182 125 198 4.05E-16 T 17-10-2018 IPR011051 RmlC-like cupin domain superfamily VI35_00935 787b9b3ffebd0130cb66be1c902db69c 221 TIGRFAM TIGR02451 anti_sig_ChrR: anti-sigma factor, putative, ChrR family 5 216 1.4E-54 T 17-10-2018 IPR012807 Anti-sigma factor ChrR, putative VI35_00935 787b9b3ffebd0130cb66be1c902db69c 221 Gene3D G3DSA:1.10.10.1320 1 111 4.2E-14 T 17-10-2018 VI35_00935 787b9b3ffebd0130cb66be1c902db69c 221 Gene3D G3DSA:2.60.120.10 112 201 7.1E-22 T 17-10-2018 IPR014710 RmlC-like jelly roll fold VI35_00935 787b9b3ffebd0130cb66be1c902db69c 221 Pfam PF12973 ChrR Cupin-like domain 129 196 8.2E-13 T 17-10-2018 IPR025979 ChrR-like cupin domain VI35_02010 9b4ac6eec5872ac0dc21783d3a63e34d 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 208 226 4.0E-32 T 17-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 VI35_02010 9b4ac6eec5872ac0dc21783d3a63e34d 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 228 245 4.0E-32 T 17-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 VI35_02010 9b4ac6eec5872ac0dc21783d3a63e34d 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 10 32 4.0E-32 T 17-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 VI35_02010 9b4ac6eec5872ac0dc21783d3a63e34d 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 272 287 4.0E-32 T 17-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 VI35_02010 9b4ac6eec5872ac0dc21783d3a63e34d 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 302 323 4.0E-32 T 17-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 VI35_02010 9b4ac6eec5872ac0dc21783d3a63e34d 378 Gene3D G3DSA:3.40.1690.10 217 357 8.4E-49 T 17-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal VI35_02010 9b4ac6eec5872ac0dc21783d3a63e34d 378 SUPERFAMILY SSF160544 252 353 6.93E-32 T 17-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal VI35_02010 9b4ac6eec5872ac0dc21783d3a63e34d 378 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 7 352 2.1E-111 T 17-10-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 VI35_02010 9b4ac6eec5872ac0dc21783d3a63e34d 378 Pfam PF01312 FlhB HrpN YscU SpaS Family 7 347 2.2E-112 T 17-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 VI35_08420 effd1bbde28b6f75b33b0db7f3a3cd77 588 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 3 588 1.2E-204 T 17-10-2018 IPR010272 Type VI secretion system, TssF-like VI35_08420 effd1bbde28b6f75b33b0db7f3a3cd77 588 PIRSF PIRSF028304 1 588 2.5E-182 T 17-10-2018 IPR010272 Type VI secretion system, TssF-like VI35_08420 effd1bbde28b6f75b33b0db7f3a3cd77 588 Pfam PF05947 Type VI secretion system, TssF 5 586 1.6E-195 T 17-10-2018 IPR010272 Type VI secretion system, TssF-like VI35_08945 b5619189fc6a57c59b8d8144a39b84d2 434 Gene3D G3DSA:1.10.150.20 181 233 7.5E-12 T 17-10-2018 VI35_08945 b5619189fc6a57c59b8d8144a39b84d2 434 Gene3D G3DSA:3.30.70.270 5 156 2.1E-45 T 17-10-2018 VI35_08945 b5619189fc6a57c59b8d8144a39b84d2 434 Gene3D G3DSA:3.30.1490.100 246 355 2.1E-7 T 17-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 VI35_08945 b5619189fc6a57c59b8d8144a39b84d2 434 Pfam PF11799 impB/mucB/samB family C-terminal domain 245 353 2.8E-15 T 17-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 VI35_08945 b5619189fc6a57c59b8d8144a39b84d2 434 Gene3D G3DSA:2.30.40.20 13 76 2.1E-45 T 17-10-2018 VI35_08945 b5619189fc6a57c59b8d8144a39b84d2 434 SUPERFAMILY SSF56672 5 238 8.54E-72 T 17-10-2018 VI35_08945 b5619189fc6a57c59b8d8144a39b84d2 434 SUPERFAMILY SSF100879 250 336 9.42E-8 T 17-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 VI35_08945 b5619189fc6a57c59b8d8144a39b84d2 434 Pfam PF00817 impB/mucB/samB family 8 152 1.8E-34 T 17-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 VI35_08945 b5619189fc6a57c59b8d8144a39b84d2 434 Pfam PF13438 Domain of unknown function (DUF4113) 372 422 6.4E-17 T 17-10-2018 IPR025188 Domain of unknown function DUF4113 VI35_06465 1e8855782db1295d7438ccbcd8626242 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 3.7E-16 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_06465 1e8855782db1295d7438ccbcd8626242 304 Gene3D G3DSA:3.40.190.10 95 294 6.9E-54 T 17-10-2018 VI35_06465 1e8855782db1295d7438ccbcd8626242 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 3.6E-5 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_06465 1e8855782db1295d7438ccbcd8626242 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 3.6E-5 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_06465 1e8855782db1295d7438ccbcd8626242 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 3.6E-5 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_06465 1e8855782db1295d7438ccbcd8626242 304 Gene3D G3DSA:1.10.10.10 2 89 6.3E-23 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_06465 1e8855782db1295d7438ccbcd8626242 304 Gene3D G3DSA:3.40.190.10 165 266 6.9E-54 T 17-10-2018 VI35_06465 1e8855782db1295d7438ccbcd8626242 304 Pfam PF03466 LysR substrate binding domain 94 287 1.5E-36 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_06465 1e8855782db1295d7438ccbcd8626242 304 SUPERFAMILY SSF53850 93 298 1.47E-34 T 17-10-2018 VI35_06465 1e8855782db1295d7438ccbcd8626242 304 SUPERFAMILY SSF46785 4 114 6.2E-20 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_03420 65169d73889957d6485467787ff96883 621 Gene3D G3DSA:1.10.10.10 537 621 3.5E-37 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_03420 65169d73889957d6485467787ff96883 621 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 383 608 1.6E-38 T 17-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 VI35_03420 65169d73889957d6485467787ff96883 621 Pfam PF04539 Sigma-70 region 3 466 542 4.3E-29 T 17-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 VI35_03420 65169d73889957d6485467787ff96883 621 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 580 606 - T 17-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VI35_03420 65169d73889957d6485467787ff96883 621 Gene3D G3DSA:1.10.10.10 460 536 8.3E-33 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_03420 65169d73889957d6485467787ff96883 621 Pfam PF04546 Sigma-70, non-essential region 141 356 1.5E-68 T 17-10-2018 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VI35_03420 65169d73889957d6485467787ff96883 621 PRINTS PR00046 Major sigma-70 factor signature 595 606 6.7E-31 T 17-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VI35_03420 65169d73889957d6485467787ff96883 621 PRINTS PR00046 Major sigma-70 factor signature 580 595 6.7E-31 T 17-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VI35_03420 65169d73889957d6485467787ff96883 621 PRINTS PR00046 Major sigma-70 factor signature 435 443 6.7E-31 T 17-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VI35_03420 65169d73889957d6485467787ff96883 621 PRINTS PR00046 Major sigma-70 factor signature 411 424 6.7E-31 T 17-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VI35_03420 65169d73889957d6485467787ff96883 621 PRINTS PR00046 Major sigma-70 factor signature 559 571 6.7E-31 T 17-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VI35_03420 65169d73889957d6485467787ff96883 621 SUPERFAMILY SSF88659 517 619 9.16E-26 T 17-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VI35_03420 65169d73889957d6485467787ff96883 621 SUPERFAMILY SSF88946 117 454 1.01E-98 T 17-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 VI35_03420 65169d73889957d6485467787ff96883 621 Pfam PF04542 Sigma-70 region 2 387 456 1.7E-21 T 17-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 VI35_03420 65169d73889957d6485467787ff96883 621 Pfam PF03979 Sigma-70 factor, region 1.1 8 83 5.9E-30 T 17-10-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 VI35_03420 65169d73889957d6485467787ff96883 621 Gene3D G3DSA:1.10.601.10 115 456 1.2E-141 T 17-10-2018 VI35_03420 65169d73889957d6485467787ff96883 621 Pfam PF04545 Sigma-70, region 4 555 608 1.0E-18 T 17-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 VI35_03420 65169d73889957d6485467787ff96883 621 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 383 619 4.6E-121 T 17-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 VI35_03420 65169d73889957d6485467787ff96883 621 SUPERFAMILY SSF88659 460 533 1.14E-20 T 17-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VI35_03420 65169d73889957d6485467787ff96883 621 Pfam PF00140 Sigma-70 factor, region 1.2 100 130 1.8E-12 T 17-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VI35_03420 65169d73889957d6485467787ff96883 621 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 7 620 46.301 T 17-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 VI35_03420 65169d73889957d6485467787ff96883 621 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 411 424 - T 17-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VI35_03420 65169d73889957d6485467787ff96883 621 Gene3D G3DSA:1.10.220.120 4 67 8.9E-31 T 17-10-2018 VI35_05680 67431e78e14895ffb564f43f17f3a496 179 Hamap MF_00746 Protein SprT [sprT]. 14 173 37.54 T 17-10-2018 IPR023483 Uncharacterised protein family SprT VI35_05680 67431e78e14895ffb564f43f17f3a496 179 Pfam PF17283 SprT-like zinc ribbon domain 134 171 2.1E-9 T 17-10-2018 IPR035240 SprT-like, zinc ribbon domain VI35_05680 67431e78e14895ffb564f43f17f3a496 179 Pfam PF10263 SprT-like family 21 126 1.5E-14 T 17-10-2018 IPR006640 SprT-like VI35_05680 67431e78e14895ffb564f43f17f3a496 179 SMART SM00731 18 173 2.7E-42 T 17-10-2018 IPR006640 SprT-like VI35_19000 ab2f97be322f69c77af284a0a602a6fa 654 PIRSF PIRSF005091 15 647 1.2E-96 T 17-10-2018 IPR012160 Lipoteichoic acid synthase-like VI35_19000 ab2f97be322f69c77af284a0a602a6fa 654 Gene3D G3DSA:3.40.720.10 276 562 2.2E-147 T 17-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VI35_19000 ab2f97be322f69c77af284a0a602a6fa 654 Gene3D G3DSA:3.30.1120.80 269 643 2.2E-147 T 17-10-2018 VI35_19000 ab2f97be322f69c77af284a0a602a6fa 654 SUPERFAMILY SSF53649 283 610 5.1E-68 T 17-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VI35_19000 ab2f97be322f69c77af284a0a602a6fa 654 Pfam PF00884 Sulfatase 285 555 3.8E-42 T 17-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 VI35_09610 b85588f2e5bc9f18c8c4edb91fd37a99 316 Gene3D G3DSA:3.50.50.60 118 244 5.3E-127 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_09610 b85588f2e5bc9f18c8c4edb91fd37a99 316 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 301 3.3E-49 T 17-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VI35_09610 b85588f2e5bc9f18c8c4edb91fd37a99 316 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 136 156 - T 17-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 VI35_09610 b85588f2e5bc9f18c8c4edb91fd37a99 316 SUPERFAMILY SSF51905 2 313 1.1E-52 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_09610 b85588f2e5bc9f18c8c4edb91fd37a99 316 Gene3D G3DSA:3.50.50.60 9 311 5.3E-127 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_09610 b85588f2e5bc9f18c8c4edb91fd37a99 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 107 115 1.8E-77 T 17-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VI35_09610 b85588f2e5bc9f18c8c4edb91fd37a99 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 144 168 1.8E-77 T 17-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VI35_09610 b85588f2e5bc9f18c8c4edb91fd37a99 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 199 215 1.8E-77 T 17-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VI35_09610 b85588f2e5bc9f18c8c4edb91fd37a99 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 238 259 1.8E-77 T 17-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VI35_09610 b85588f2e5bc9f18c8c4edb91fd37a99 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 276 294 1.8E-77 T 17-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VI35_09610 b85588f2e5bc9f18c8c4edb91fd37a99 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 129 141 1.8E-77 T 17-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VI35_09610 b85588f2e5bc9f18c8c4edb91fd37a99 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 1.8E-77 T 17-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VI35_09610 b85588f2e5bc9f18c8c4edb91fd37a99 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 41 56 1.8E-77 T 17-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VI35_09610 b85588f2e5bc9f18c8c4edb91fd37a99 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 62 72 1.8E-77 T 17-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VI35_09610 b85588f2e5bc9f18c8c4edb91fd37a99 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 1.4E-39 T 17-10-2018 VI35_09610 b85588f2e5bc9f18c8c4edb91fd37a99 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 236 252 1.4E-39 T 17-10-2018 VI35_09610 b85588f2e5bc9f18c8c4edb91fd37a99 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 1.4E-39 T 17-10-2018 VI35_09610 b85588f2e5bc9f18c8c4edb91fd37a99 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 1.4E-39 T 17-10-2018 VI35_09610 b85588f2e5bc9f18c8c4edb91fd37a99 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 288 1.4E-39 T 17-10-2018 VI35_09610 b85588f2e5bc9f18c8c4edb91fd37a99 316 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 8 313 2.2E-122 T 17-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 VI35_20285 9986438c077a95de3f1548649bf9d8f6 206 Pfam PF00692 dUTPase 83 159 6.2E-12 T 17-10-2018 IPR029054 dUTPase-like VI35_20285 9986438c077a95de3f1548649bf9d8f6 206 Gene3D G3DSA:2.70.40.10 2 194 2.4E-38 T 17-10-2018 IPR036157 dUTPase-like superfamily VI35_20285 9986438c077a95de3f1548649bf9d8f6 206 SUPERFAMILY SSF51283 16 185 6.15E-33 T 17-10-2018 IPR036157 dUTPase-like superfamily VI35_20285 9986438c077a95de3f1548649bf9d8f6 206 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 19 188 7.2E-34 T 17-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 VI35_09510 458a5c1324a9826a6cbfc5678ee52547 339 Gene3D G3DSA:3.40.190.10 28 301 1.2E-88 T 17-10-2018 VI35_09510 458a5c1324a9826a6cbfc5678ee52547 339 TIGRFAM TIGR03261 phnS2: putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein 9 336 1.3E-147 T 17-10-2018 IPR017663 ABC transport system, 1-aminoethylphosphonate-binding protein, putative VI35_09510 458a5c1324a9826a6cbfc5678ee52547 339 Gene3D G3DSA:3.40.190.10 129 315 1.2E-88 T 17-10-2018 VI35_09510 458a5c1324a9826a6cbfc5678ee52547 339 SUPERFAMILY SSF53850 25 327 2.32E-69 T 17-10-2018 VI35_09510 458a5c1324a9826a6cbfc5678ee52547 339 PIRSF PIRSF002825 1 332 1.3E-85 T 17-10-2018 IPR026045 Ferric binding protein VI35_09510 458a5c1324a9826a6cbfc5678ee52547 339 Pfam PF13343 Bacterial extracellular solute-binding protein 74 316 2.5E-30 T 17-10-2018 VI35_12370 0675033effa53372d55963b28c95c497 331 Pfam PF01136 Peptidase family U32 76 330 1.0E-67 T 17-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 VI35_12370 0675033effa53372d55963b28c95c497 331 ProSitePatterns PS01276 Peptidase family U32 signature. 161 179 - T 17-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 VI35_19140 fa0203e15444c9a041b857aa88c29ea5 159 Gene3D G3DSA:3.40.630.30 10 149 2.1E-31 T 17-10-2018 VI35_19140 fa0203e15444c9a041b857aa88c29ea5 159 Pfam PF00583 Acetyltransferase (GNAT) family 48 140 4.7E-17 T 17-10-2018 IPR000182 GNAT domain VI35_19140 fa0203e15444c9a041b857aa88c29ea5 159 SUPERFAMILY SSF55729 12 141 2.54E-29 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_09370 1dea4b4d0611446b19c5c384d15ad0b7 41 Pfam PF00444 Ribosomal protein L36 1 41 2.4E-18 T 17-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_09370 1dea4b4d0611446b19c5c384d15ad0b7 41 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 41 2.3E-9 T 17-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_09370 1dea4b4d0611446b19c5c384d15ad0b7 41 SUPERFAMILY SSF57840 1 41 1.2E-14 T 17-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_09370 1dea4b4d0611446b19c5c384d15ad0b7 41 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 41 17.752 T 17-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_09370 1dea4b4d0611446b19c5c384d15ad0b7 41 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 16 41 0.003 T 17-10-2018 VI35_09370 1dea4b4d0611446b19c5c384d15ad0b7 41 ProSitePatterns PS00828 Ribosomal protein L36 signature. 14 40 - T 17-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_09790 4074a36a03934899ae4f7262d3ecaf8c 529 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 51 65 1.0E-5 T 17-10-2018 VI35_09790 4074a36a03934899ae4f7262d3ecaf8c 529 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 81 97 1.0E-5 T 17-10-2018 VI35_09790 4074a36a03934899ae4f7262d3ecaf8c 529 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 10 24 1.0E-5 T 17-10-2018 VI35_09790 4074a36a03934899ae4f7262d3ecaf8c 529 Gene3D G3DSA:3.40.50.880 9 210 1.2E-54 T 17-10-2018 IPR029062 Class I glutamine amidotransferase-like VI35_09790 4074a36a03934899ae4f7262d3ecaf8c 529 SUPERFAMILY SSF52402 201 424 3.53E-59 T 17-10-2018 VI35_09790 4074a36a03934899ae4f7262d3ecaf8c 529 SUPERFAMILY SSF54810 409 529 1.01E-51 T 17-10-2018 VI35_09790 4074a36a03934899ae4f7262d3ecaf8c 529 Gene3D G3DSA:3.30.300.10 410 529 6.0E-52 T 17-10-2018 VI35_09790 4074a36a03934899ae4f7262d3ecaf8c 529 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 7 529 56.569 T 17-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 VI35_09790 4074a36a03934899ae4f7262d3ecaf8c 529 Pfam PF02540 NAD synthase 227 296 4.2E-7 T 17-10-2018 IPR022310 NAD/GMP synthase VI35_09790 4074a36a03934899ae4f7262d3ecaf8c 529 PRINTS PR00097 Anthranilate synthase component II signature 81 92 4.5E-6 T 17-10-2018 VI35_09790 4074a36a03934899ae4f7262d3ecaf8c 529 PRINTS PR00097 Anthranilate synthase component II signature 181 194 4.5E-6 T 17-10-2018 VI35_09790 4074a36a03934899ae4f7262d3ecaf8c 529 PRINTS PR00097 Anthranilate synthase component II signature 54 63 4.5E-6 T 17-10-2018 VI35_09790 4074a36a03934899ae4f7262d3ecaf8c 529 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 10 209 4.3E-81 T 17-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 VI35_09790 4074a36a03934899ae4f7262d3ecaf8c 529 SUPERFAMILY SSF52317 8 241 8.32E-57 T 17-10-2018 IPR029062 Class I glutamine amidotransferase-like VI35_09790 4074a36a03934899ae4f7262d3ecaf8c 529 Pfam PF00117 Glutamine amidotransferase class-I 12 203 2.1E-40 T 17-10-2018 IPR017926 Glutamine amidotransferase VI35_09790 4074a36a03934899ae4f7262d3ecaf8c 529 Pfam PF00958 GMP synthase C terminal domain 437 528 7.1E-44 T 17-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 VI35_09790 4074a36a03934899ae4f7262d3ecaf8c 529 PRINTS PR00096 Glutamine amidotransferase superfamily signature 54 63 1.4E-7 T 17-10-2018 VI35_09790 4074a36a03934899ae4f7262d3ecaf8c 529 PRINTS PR00096 Glutamine amidotransferase superfamily signature 181 194 1.4E-7 T 17-10-2018 VI35_09790 4074a36a03934899ae4f7262d3ecaf8c 529 PRINTS PR00096 Glutamine amidotransferase superfamily signature 81 92 1.4E-7 T 17-10-2018 VI35_09790 4074a36a03934899ae4f7262d3ecaf8c 529 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 217 529 8.8E-156 T 17-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 VI35_09790 4074a36a03934899ae4f7262d3ecaf8c 529 Gene3D G3DSA:3.40.50.620 213 409 5.1E-74 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_21145 c8de566ac6942d66295bcdd3e108072b 260 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 24 254 1.4E-42 T 17-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21145 c8de566ac6942d66295bcdd3e108072b 260 ProSitePatterns PS00449 ATP synthase a subunit signature. 194 203 - T 17-10-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21145 c8de566ac6942d66295bcdd3e108072b 260 Hamap MF_01393 ATP synthase subunit a [atpB]. 14 259 16.043 T 17-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21145 c8de566ac6942d66295bcdd3e108072b 260 PRINTS PR00123 ATP synthase A subunit signature 93 109 9.5E-15 T 17-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21145 c8de566ac6942d66295bcdd3e108072b 260 PRINTS PR00123 ATP synthase A subunit signature 191 213 9.5E-15 T 17-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21145 c8de566ac6942d66295bcdd3e108072b 260 PRINTS PR00123 ATP synthase A subunit signature 239 254 9.5E-15 T 17-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21145 c8de566ac6942d66295bcdd3e108072b 260 Pfam PF00119 ATP synthase A chain 35 253 1.4E-56 T 17-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21145 c8de566ac6942d66295bcdd3e108072b 260 SUPERFAMILY SSF81336 85 253 3.4E-48 T 17-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21145 c8de566ac6942d66295bcdd3e108072b 260 Gene3D G3DSA:1.20.120.220 84 259 5.8E-67 T 17-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_06075 ab9ac597bd4730abed70e954377b194f 270 Pfam PF04333 MlaA lipoprotein 48 238 7.0E-61 T 17-10-2018 IPR007428 MlaA lipoprotein GO:0016020 VI35_06075 ab9ac597bd4730abed70e954377b194f 270 PRINTS PR01805 VacJ lipoprotein signature 118 135 7.0E-21 T 17-10-2018 IPR007428 MlaA lipoprotein GO:0016020 VI35_06075 ab9ac597bd4730abed70e954377b194f 270 PRINTS PR01805 VacJ lipoprotein signature 49 62 7.0E-21 T 17-10-2018 IPR007428 MlaA lipoprotein GO:0016020 VI35_06075 ab9ac597bd4730abed70e954377b194f 270 PRINTS PR01805 VacJ lipoprotein signature 154 171 7.0E-21 T 17-10-2018 IPR007428 MlaA lipoprotein GO:0016020 VI35_06075 ab9ac597bd4730abed70e954377b194f 270 PRINTS PR01805 VacJ lipoprotein signature 67 83 7.0E-21 T 17-10-2018 IPR007428 MlaA lipoprotein GO:0016020 VI35_09540 1e8f3df6a6d6a0f1ce6220eb0098152e 282 ProSitePatterns PS01005 Formate and nitrite transporters signature 1. 83 92 - T 17-10-2018 IPR024002 Formate/nitrite transporter, conserved site VI35_09540 1e8f3df6a6d6a0f1ce6220eb0098152e 282 Pfam PF01226 Formate/nitrite transporter 19 276 1.2E-75 T 17-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 VI35_09540 1e8f3df6a6d6a0f1ce6220eb0098152e 282 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 168 178 - T 17-10-2018 IPR024002 Formate/nitrite transporter, conserved site VI35_09540 1e8f3df6a6d6a0f1ce6220eb0098152e 282 TIGRFAM TIGR04060 formate_focA: formate transporter FocA 15 279 9.4E-127 T 17-10-2018 IPR023999 Formate transporter FocA, putative GO:0015499|GO:0015724|GO:0016021 VI35_09540 1e8f3df6a6d6a0f1ce6220eb0098152e 282 Gene3D G3DSA:1.20.1080.10 1 268 2.3E-98 T 17-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 VI35_09540 1e8f3df6a6d6a0f1ce6220eb0098152e 282 TIGRFAM TIGR00790 fnt: formate/nitrite transporter 26 278 1.1E-86 T 17-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 VI35_20610 36384d5d5287da99ca72b1c61f8213c3 670 TIGRFAM TIGR01074 rep: ATP-dependent DNA helicase Rep 2 667 0.0 T 17-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 VI35_20610 36384d5d5287da99ca72b1c61f8213c3 670 Gene3D G3DSA:3.40.50.300 274 633 1.5E-127 T 17-10-2018 VI35_20610 36384d5d5287da99ca72b1c61f8213c3 670 Gene3D G3DSA:3.40.50.300 4 266 2.7E-97 T 17-10-2018 VI35_20610 36384d5d5287da99ca72b1c61f8213c3 670 Gene3D G3DSA:1.10.10.160 108 181 2.7E-97 T 17-10-2018 IPR013986 DExx box DNA helicase domain superfamily VI35_20610 36384d5d5287da99ca72b1c61f8213c3 670 Pfam PF13361 UvrD-like helicase C-terminal domain 271 614 2.9E-69 T 17-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 VI35_20610 36384d5d5287da99ca72b1c61f8213c3 670 Gene3D G3DSA:1.10.486.10 377 540 1.5E-127 T 17-10-2018 VI35_20610 36384d5d5287da99ca72b1c61f8213c3 670 SUPERFAMILY SSF52540 1 640 4.46E-159 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_20610 36384d5d5287da99ca72b1c61f8213c3 670 Hamap MF_01920 ATP-dependent DNA helicase Rep [rep]. 1 668 40.508 T 17-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 VI35_20610 36384d5d5287da99ca72b1c61f8213c3 670 Pfam PF00580 UvrD/REP helicase N-terminal domain 3 265 9.7E-76 T 17-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 VI35_13100 74fe5a2af067be81a204dd31d66f904e 301 SUPERFAMILY SSF55073 155 299 2.43E-40 T 17-10-2018 IPR029787 Nucleotide cyclase VI35_13100 74fe5a2af067be81a204dd31d66f904e 301 Gene3D G3DSA:3.30.70.270 136 301 5.9E-46 T 17-10-2018 VI35_13100 74fe5a2af067be81a204dd31d66f904e 301 SMART SM00267 139 301 2.3E-42 T 17-10-2018 IPR000160 GGDEF domain VI35_13100 74fe5a2af067be81a204dd31d66f904e 301 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 147 300 5.3E-34 T 17-10-2018 IPR000160 GGDEF domain VI35_13100 74fe5a2af067be81a204dd31d66f904e 301 Pfam PF00990 Diguanylate cyclase, GGDEF domain 150 297 8.7E-34 T 17-10-2018 IPR000160 GGDEF domain VI35_20590 97f81aa27de7f1fc1a1013c121dde7a4 396 Pfam PF00155 Aminotransferase class I and II 42 385 3.1E-74 T 17-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 VI35_20590 97f81aa27de7f1fc1a1013c121dde7a4 396 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 240 249 - T 17-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 VI35_20590 97f81aa27de7f1fc1a1013c121dde7a4 396 TIGRFAM TIGR01822 2am3keto_CoA: glycine C-acetyltransferase 5 396 2.2E-215 T 17-10-2018 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|Reactome: R-HSA-8849175 VI35_20590 97f81aa27de7f1fc1a1013c121dde7a4 396 SUPERFAMILY SSF53383 5 394 5.98E-123 T 17-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VI35_20590 97f81aa27de7f1fc1a1013c121dde7a4 396 Gene3D G3DSA:3.40.640.10 57 295 1.2E-137 T 17-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VI35_20590 97f81aa27de7f1fc1a1013c121dde7a4 396 Hamap MF_00985 2-amino-3-ketobutyrate coenzyme A ligase [kbl]. 2 394 54.709 T 17-10-2018 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|Reactome: R-HSA-8849175 VI35_20590 97f81aa27de7f1fc1a1013c121dde7a4 396 Gene3D G3DSA:3.90.1150.10 36 386 1.2E-137 T 17-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VI35_19090 8aa036c2a908c2ec6ab79bd930dffbae 104 SMART SM01219 1 104 4.5E-50 T 17-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VI35_19090 8aa036c2a908c2ec6ab79bd930dffbae 104 TIGRFAM TIGR03421 FeS_CyaY: iron donor protein CyaY 3 103 2.3E-40 T 17-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VI35_19090 8aa036c2a908c2ec6ab79bd930dffbae 104 SUPERFAMILY SSF55387 1 103 2.27E-33 T 17-10-2018 VI35_19090 8aa036c2a908c2ec6ab79bd930dffbae 104 ProSitePatterns PS01344 Frataxin family signature. 48 62 - T 17-10-2018 IPR020895 Frataxin conserved site Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VI35_19090 8aa036c2a908c2ec6ab79bd930dffbae 104 Hamap MF_00142 Iron-sulfur cluster assembly protein CyaY [cyaY]. 1 103 25.611 T 17-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VI35_19090 8aa036c2a908c2ec6ab79bd930dffbae 104 Pfam PF01491 Frataxin-like domain 1 100 4.2E-25 T 17-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VI35_19090 8aa036c2a908c2ec6ab79bd930dffbae 104 Gene3D G3DSA:3.30.920.10 1 104 2.7E-36 T 17-10-2018 IPR036524 Frataxin/CyaY superfamily GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VI35_14675 13566f68cb11ee65712970728195b41e 331 SUPERFAMILY SSF51735 1 303 1.08E-33 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_14675 13566f68cb11ee65712970728195b41e 331 Pfam PF01370 NAD dependent epimerase/dehydratase family 89 203 3.7E-9 T 17-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 VI35_14675 13566f68cb11ee65712970728195b41e 331 Gene3D G3DSA:3.40.50.720 2 254 7.9E-30 T 17-10-2018 VI35_03370 d37577540d90b3d52f9249f4d5ef3a6d 352 SUPERFAMILY SSF55120 3 334 1.11E-97 T 17-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_03370 d37577540d90b3d52f9249f4d5ef3a6d 352 TIGRFAM TIGR00094 tRNA_TruD_broad: tRNA pseudouridine synthase, TruD family 2 233 3.3E-57 T 17-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_03370 d37577540d90b3d52f9249f4d5ef3a6d 352 Gene3D G3DSA:3.30.2340.10 165 297 1.5E-119 T 17-10-2018 VI35_03370 d37577540d90b3d52f9249f4d5ef3a6d 352 Gene3D G3DSA:3.30.2350.20 15 332 1.5E-119 T 17-10-2018 VI35_03370 d37577540d90b3d52f9249f4d5ef3a6d 352 Hamap MF_01082 tRNA pseudouridine synthase D [truD]. 3 337 28.345 T 17-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_03370 d37577540d90b3d52f9249f4d5ef3a6d 352 ProSitePatterns PS01268 Uncharacterized protein family UPF0024 signature. 75 88 - T 17-10-2018 IPR020119 Pseudouridine synthase TruD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Reactome: R-HSA-6782315 VI35_03370 d37577540d90b3d52f9249f4d5ef3a6d 352 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 5 165 1.0E-40 T 17-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_03370 d37577540d90b3d52f9249f4d5ef3a6d 352 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 185 332 1.4E-21 T 17-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_04850 b3a6cb33a8a373f758f9966cbea79295 281 Gene3D G3DSA:3.20.20.20 1 277 2.8E-104 T 17-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VI35_04850 b3a6cb33a8a373f758f9966cbea79295 281 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 51 64 - T 17-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VI35_04850 b3a6cb33a8a373f758f9966cbea79295 281 Pfam PF00809 Pterin binding enzyme 18 257 1.1E-82 T 17-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VI35_04850 b3a6cb33a8a373f758f9966cbea79295 281 SUPERFAMILY SSF51717 4 272 1.96E-101 T 17-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VI35_04850 b3a6cb33a8a373f758f9966cbea79295 281 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 17 268 8.2E-97 T 17-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 VI35_04850 b3a6cb33a8a373f758f9966cbea79295 281 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 17 32 - T 17-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VI35_14000 9eae72cceb171d6f074e1880fafffa8d 307 Pfam PF00849 RNA pseudouridylate synthase 67 197 3.8E-17 T 17-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_14000 9eae72cceb171d6f074e1880fafffa8d 307 Gene3D G3DSA:3.30.70.580 69 227 3.1E-52 T 17-10-2018 VI35_14000 9eae72cceb171d6f074e1880fafffa8d 307 SUPERFAMILY SSF55120 67 235 4.08E-43 T 17-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_14000 9eae72cceb171d6f074e1880fafffa8d 307 Pfam PF01479 S4 domain 4 48 6.1E-12 T 17-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_14000 9eae72cceb171d6f074e1880fafffa8d 307 Gene3D G3DSA:3.10.290.10 1 59 2.0E-21 T 17-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 VI35_14000 9eae72cceb171d6f074e1880fafffa8d 307 SMART SM00363 3 64 7.3E-10 T 17-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_14000 9eae72cceb171d6f074e1880fafffa8d 307 SUPERFAMILY SSF55174 5 96 1.31E-16 T 17-10-2018 VI35_14000 9eae72cceb171d6f074e1880fafffa8d 307 Gene3D G3DSA:3.30.70.1560 129 219 3.1E-52 T 17-10-2018 VI35_14000 9eae72cceb171d6f074e1880fafffa8d 307 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 105 119 - T 17-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 VI35_14000 9eae72cceb171d6f074e1880fafffa8d 307 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 71 231 7.7E-61 T 17-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 VI35_06005 88be5b9bb113e83e751bc74882b54d9f 288 Gene3D G3DSA:2.30.30.40 152 263 3.2E-5 T 17-10-2018 VI35_06005 88be5b9bb113e83e751bc74882b54d9f 288 SUPERFAMILY SSF50341 144 276 3.92E-16 T 17-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 VI35_06005 88be5b9bb113e83e751bc74882b54d9f 288 PIRSF PIRSF020479 27 287 5.4E-78 T 17-10-2018 IPR014506 Uncharacterised conserved protein UCP020479, signal transduction CheW-like VI35_06005 88be5b9bb113e83e751bc74882b54d9f 288 PIRSF PIRSF020479 3 74 1.9 T 17-10-2018 IPR014506 Uncharacterised conserved protein UCP020479, signal transduction CheW-like VI35_06005 88be5b9bb113e83e751bc74882b54d9f 288 Gene3D G3DSA:2.40.50.180 168 233 3.2E-5 T 17-10-2018 VI35_06005 88be5b9bb113e83e751bc74882b54d9f 288 SMART SM00260 145 276 2.0E-5 T 17-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VI35_06005 88be5b9bb113e83e751bc74882b54d9f 288 Pfam PF01584 CheW-like domain 149 276 7.3E-15 T 17-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VI35_14495 ad5ca15867677d90e5c4c52bdcce7ae4 332 Pfam PF10282 Lactonase, 7-bladed beta-propeller 11 327 3.7E-63 T 17-10-2018 IPR019405 Lactonase, 7-bladed beta propeller VI35_14495 ad5ca15867677d90e5c4c52bdcce7ae4 332 Gene3D G3DSA:2.130.10.10 1 331 1.6E-89 T 17-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 VI35_14495 ad5ca15867677d90e5c4c52bdcce7ae4 332 SUPERFAMILY SSF50974 4 290 9.42E-32 T 17-10-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 VI35_19805 7e93e6e0ce48e099b04deba75dbcc295 166 Pfam PF00333 Ribosomal protein S5, N-terminal domain 11 75 2.5E-29 T 17-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 VI35_19805 7e93e6e0ce48e099b04deba75dbcc295 166 Gene3D G3DSA:3.30.230.10 74 166 1.3E-36 T 17-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VI35_19805 7e93e6e0ce48e099b04deba75dbcc295 166 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 10 163 9.7E-69 T 17-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 VI35_19805 7e93e6e0ce48e099b04deba75dbcc295 166 Pfam PF03719 Ribosomal protein S5, C-terminal domain 87 157 5.6E-30 T 17-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 VI35_19805 7e93e6e0ce48e099b04deba75dbcc295 166 SUPERFAMILY SSF54211 79 158 4.05E-27 T 17-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VI35_19805 7e93e6e0ce48e099b04deba75dbcc295 166 SUPERFAMILY SSF54768 9 76 1.99E-23 T 17-10-2018 VI35_19805 7e93e6e0ce48e099b04deba75dbcc295 166 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 163 34.216 T 17-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 VI35_19805 7e93e6e0ce48e099b04deba75dbcc295 166 Gene3D G3DSA:3.30.160.20 1 72 1.2E-32 T 17-10-2018 VI35_19805 7e93e6e0ce48e099b04deba75dbcc295 166 ProSitePatterns PS00585 Ribosomal protein S5 signature. 28 60 - T 17-10-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site VI35_08565 530e4c524d2e3fdd8a4ea4b1102d219d 213 ProSitePatterns PS00211 ABC transporters family signature. 125 139 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_08565 530e4c524d2e3fdd8a4ea4b1102d219d 213 SMART SM00382 26 208 3.1E-7 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_08565 530e4c524d2e3fdd8a4ea4b1102d219d 213 Pfam PF00005 ABC transporter 18 153 1.7E-14 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_08565 530e4c524d2e3fdd8a4ea4b1102d219d 213 SUPERFAMILY SSF52540 2 198 9.23E-39 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_08565 530e4c524d2e3fdd8a4ea4b1102d219d 213 Gene3D G3DSA:3.40.50.300 1 211 5.8E-42 T 17-10-2018 VI35_03620 88376fc9bb2f01abb6e8d6a3dcdda04c 305 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_03620 88376fc9bb2f01abb6e8d6a3dcdda04c 305 Pfam PF00005 ABC transporter 20 164 1.3E-32 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_03620 88376fc9bb2f01abb6e8d6a3dcdda04c 305 SUPERFAMILY SSF52540 3 229 2.3E-61 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_03620 88376fc9bb2f01abb6e8d6a3dcdda04c 305 SMART SM00382 29 212 2.6E-12 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_03620 88376fc9bb2f01abb6e8d6a3dcdda04c 305 Gene3D G3DSA:3.40.50.300 1 232 2.0E-64 T 17-10-2018 VI35_07860 66808739e80a6c073aa056ec47d21a99 379 SUPERFAMILY SSF47413 9 70 5.35E-7 T 17-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VI35_07860 66808739e80a6c073aa056ec47d21a99 379 Pfam PF06114 IrrE N-terminal-like domain 185 295 1.6E-16 T 17-10-2018 IPR010359 IrrE N-terminal-like domain VI35_07860 66808739e80a6c073aa056ec47d21a99 379 Gene3D G3DSA:1.10.260.40 9 73 1.5E-5 T 17-10-2018 VI35_19495 a8b639eb626d1b6d53be0a592e9215f2 287 Gene3D G3DSA:3.30.1490.300 71 129 1.3E-5 T 17-10-2018 VI35_19495 a8b639eb626d1b6d53be0a592e9215f2 287 Gene3D G3DSA:3.30.420.40 163 193 1.3E-5 T 17-10-2018 VI35_19495 a8b639eb626d1b6d53be0a592e9215f2 287 Gene3D G3DSA:3.30.420.40 31 162 1.3E-5 T 17-10-2018 VI35_19495 a8b639eb626d1b6d53be0a592e9215f2 287 SUPERFAMILY SSF53067 37 153 2.07E-7 T 17-10-2018 VI35_02020 2dca72a3d6f10788d6e1b88f8df3b19e 458 SUPERFAMILY SSF52540 140 378 1.17E-67 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_02020 2dca72a3d6f10788d6e1b88f8df3b19e 458 Gene3D G3DSA:1.10.10.60 384 454 3.6E-9 T 17-10-2018 VI35_02020 2dca72a3d6f10788d6e1b88f8df3b19e 458 SMART SM00448 20 127 2.2E-8 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_02020 2dca72a3d6f10788d6e1b88f8df3b19e 458 Gene3D G3DSA:3.40.50.2300 15 134 7.1E-13 T 17-10-2018 VI35_02020 2dca72a3d6f10788d6e1b88f8df3b19e 458 Pfam PF00158 Sigma-54 interaction domain 140 306 1.5E-67 T 17-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VI35_02020 2dca72a3d6f10788d6e1b88f8df3b19e 458 SUPERFAMILY SSF46689 350 443 7.62E-9 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_02020 2dca72a3d6f10788d6e1b88f8df3b19e 458 Gene3D G3DSA:3.40.50.300 135 310 1.2E-62 T 17-10-2018 VI35_02020 2dca72a3d6f10788d6e1b88f8df3b19e 458 SMART SM00382 160 303 4.4E-10 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_02020 2dca72a3d6f10788d6e1b88f8df3b19e 458 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 226 241 - T 17-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VI35_02020 2dca72a3d6f10788d6e1b88f8df3b19e 458 SUPERFAMILY SSF52172 21 185 4.55E-21 T 17-10-2018 IPR011006 CheY-like superfamily VI35_02020 2dca72a3d6f10788d6e1b88f8df3b19e 458 Pfam PF02954 Bacterial regulatory protein, Fis family 409 443 4.1E-8 T 17-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VI35_02020 2dca72a3d6f10788d6e1b88f8df3b19e 458 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 350 359 - T 17-10-2018 IPR025944 Sigma-54 interaction domain, conserved site VI35_02020 2dca72a3d6f10788d6e1b88f8df3b19e 458 Gene3D G3DSA:1.10.8.60 311 383 1.2E-22 T 17-10-2018 VI35_02020 2dca72a3d6f10788d6e1b88f8df3b19e 458 Pfam PF00072 Response regulator receiver domain 35 127 3.4E-10 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_02020 2dca72a3d6f10788d6e1b88f8df3b19e 458 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 164 177 - T 17-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VI35_15225 bf3f83fdf3ab4ef646af90f5efd1b5cc 558 Gene3D G3DSA:3.30.450.40 4 188 1.7E-47 T 17-10-2018 IPR029016 GAF-like domain superfamily VI35_15225 bf3f83fdf3ab4ef646af90f5efd1b5cc 558 SUPERFAMILY SSF46689 471 556 7.62E-13 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_15225 bf3f83fdf3ab4ef646af90f5efd1b5cc 558 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 523 540 3.8E-9 T 17-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VI35_15225 bf3f83fdf3ab4ef646af90f5efd1b5cc 558 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 540 558 3.8E-9 T 17-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VI35_15225 bf3f83fdf3ab4ef646af90f5efd1b5cc 558 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 284 297 - T 17-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VI35_15225 bf3f83fdf3ab4ef646af90f5efd1b5cc 558 Gene3D G3DSA:3.40.50.300 267 432 6.0E-49 T 17-10-2018 VI35_15225 bf3f83fdf3ab4ef646af90f5efd1b5cc 558 Pfam PF01590 GAF domain 88 166 1.0E-4 T 17-10-2018 IPR003018 GAF domain GO:0005515 VI35_15225 bf3f83fdf3ab4ef646af90f5efd1b5cc 558 Pfam PF00158 Sigma-54 interaction domain 276 423 1.6E-53 T 17-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VI35_15225 bf3f83fdf3ab4ef646af90f5efd1b5cc 558 SUPERFAMILY SSF52540 273 499 9.02E-50 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_15225 bf3f83fdf3ab4ef646af90f5efd1b5cc 558 Pfam PF02954 Bacterial regulatory protein, Fis family 517 556 2.2E-13 T 17-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VI35_15225 bf3f83fdf3ab4ef646af90f5efd1b5cc 558 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 347 362 - T 17-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VI35_15225 bf3f83fdf3ab4ef646af90f5efd1b5cc 558 Gene3D G3DSA:1.10.8.60 443 506 2.2E-8 T 17-10-2018 VI35_15225 bf3f83fdf3ab4ef646af90f5efd1b5cc 558 Gene3D G3DSA:1.10.10.60 508 557 2.7E-16 T 17-10-2018 VI35_15225 bf3f83fdf3ab4ef646af90f5efd1b5cc 558 SMART SM00382 280 424 3.0E-7 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_08015 a3f1ffd8359179feede198aecdee4d90 272 SUPERFAMILY SSF55620 1 131 3.06E-25 T 17-10-2018 VI35_08015 a3f1ffd8359179feede198aecdee4d90 272 SUPERFAMILY SSF55620 129 271 1.06E-25 T 17-10-2018 VI35_08015 a3f1ffd8359179feede198aecdee4d90 272 Gene3D G3DSA:3.30.479.10 1 131 2.2E-22 T 17-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 VI35_08015 a3f1ffd8359179feede198aecdee4d90 272 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 2 111 8.8E-8 T 17-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 VI35_08015 a3f1ffd8359179feede198aecdee4d90 272 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 128 164 1.7E-4 T 17-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 VI35_07735 b075c0dd7100c89181fb967ac4a380f3 264 Gene3D G3DSA:1.25.40.10 154 259 4.0E-30 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_07735 b075c0dd7100c89181fb967ac4a380f3 264 SMART SM00671 48 83 2.9E-8 T 17-10-2018 IPR006597 Sel1-like repeat VI35_07735 b075c0dd7100c89181fb967ac4a380f3 264 SMART SM00671 192 227 1.8E-6 T 17-10-2018 IPR006597 Sel1-like repeat VI35_07735 b075c0dd7100c89181fb967ac4a380f3 264 SMART SM00671 120 155 5.9E-8 T 17-10-2018 IPR006597 Sel1-like repeat VI35_07735 b075c0dd7100c89181fb967ac4a380f3 264 SMART SM00671 156 191 1.1E-8 T 17-10-2018 IPR006597 Sel1-like repeat VI35_07735 b075c0dd7100c89181fb967ac4a380f3 264 SMART SM00671 84 119 1.2E-5 T 17-10-2018 IPR006597 Sel1-like repeat VI35_07735 b075c0dd7100c89181fb967ac4a380f3 264 SUPERFAMILY SSF81901 115 234 1.31E-29 T 17-10-2018 VI35_07735 b075c0dd7100c89181fb967ac4a380f3 264 SUPERFAMILY SSF81901 43 130 1.05E-21 T 17-10-2018 VI35_07735 b075c0dd7100c89181fb967ac4a380f3 264 Gene3D G3DSA:1.25.40.10 39 153 1.2E-36 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_07735 b075c0dd7100c89181fb967ac4a380f3 264 Pfam PF08238 Sel1 repeat 120 154 5.0E-7 T 17-10-2018 IPR006597 Sel1-like repeat VI35_07735 b075c0dd7100c89181fb967ac4a380f3 264 Pfam PF08238 Sel1 repeat 193 227 1.9E-6 T 17-10-2018 IPR006597 Sel1-like repeat VI35_07735 b075c0dd7100c89181fb967ac4a380f3 264 Pfam PF08238 Sel1 repeat 156 190 4.2E-8 T 17-10-2018 IPR006597 Sel1-like repeat VI35_07735 b075c0dd7100c89181fb967ac4a380f3 264 Pfam PF08238 Sel1 repeat 51 83 2.4E-5 T 17-10-2018 IPR006597 Sel1-like repeat VI35_07735 b075c0dd7100c89181fb967ac4a380f3 264 Pfam PF08238 Sel1 repeat 86 118 9.7E-6 T 17-10-2018 IPR006597 Sel1-like repeat VI35_00685 f1bfaee9c63fdaa012bbc4043538cd19 74 SUPERFAMILY SSF47336 7 67 5.76E-7 T 17-10-2018 IPR036736 ACP-like superfamily VI35_00685 f1bfaee9c63fdaa012bbc4043538cd19 74 Gene3D G3DSA:1.10.1200.10 2 71 1.8E-10 T 17-10-2018 IPR036736 ACP-like superfamily VI35_05840 caf805f9bb6cf72df20ebb8a8af699e6 560 Gene3D G3DSA:3.90.76.10 66 172 1.2E-180 T 17-10-2018 VI35_05840 caf805f9bb6cf72df20ebb8a8af699e6 560 PIRSF PIRSF002741 3 535 6.9E-71 T 17-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 VI35_05840 caf805f9bb6cf72df20ebb8a8af699e6 560 Gene3D G3DSA:3.40.190.10 46 543 1.2E-180 T 17-10-2018 VI35_05840 caf805f9bb6cf72df20ebb8a8af699e6 560 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 84 106 - T 17-10-2018 IPR023765 Solute-binding protein family 5, conserved site VI35_05840 caf805f9bb6cf72df20ebb8a8af699e6 560 Gene3D G3DSA:3.10.105.10 273 519 1.2E-180 T 17-10-2018 VI35_05840 caf805f9bb6cf72df20ebb8a8af699e6 560 SUPERFAMILY SSF53850 29 532 5.97E-105 T 17-10-2018 VI35_05840 caf805f9bb6cf72df20ebb8a8af699e6 560 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 79 461 2.8E-74 T 17-10-2018 IPR000914 Solute-binding protein family 5 domain VI35_09085 e605cda15f315176fef26541d5bb31eb 397 Gene3D G3DSA:1.10.443.10 201 385 1.2E-18 T 17-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VI35_09085 e605cda15f315176fef26541d5bb31eb 397 SUPERFAMILY SSF56349 96 379 5.72E-46 T 17-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VI35_09085 e605cda15f315176fef26541d5bb31eb 397 Pfam PF13356 Arm DNA-binding domain 3 84 9.8E-12 T 17-10-2018 IPR025166 Integrase, DNA-binding domain VI35_09085 e605cda15f315176fef26541d5bb31eb 397 Gene3D G3DSA:1.10.150.130 89 200 9.7E-12 T 17-10-2018 IPR010998 Integrase/recombinase, N-terminal VI35_09085 e605cda15f315176fef26541d5bb31eb 397 Pfam PF00589 Phage integrase family 204 368 1.0E-13 T 17-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VI35_09085 e605cda15f315176fef26541d5bb31eb 397 Gene3D G3DSA:3.30.160.390 1 86 4.3E-19 T 17-10-2018 IPR038488 Integrase, DNA-binding domain superfamily VI35_11830 3c23e730d397e6aaccb8b4fb4b75276d 417 Gene3D G3DSA:3.50.50.60 107 405 3.0E-54 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_11830 3c23e730d397e6aaccb8b4fb4b75276d 417 Pfam PF01266 FAD dependent oxidoreductase 2 398 3.4E-76 T 17-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 VI35_11830 3c23e730d397e6aaccb8b4fb4b75276d 417 Hamap MF_01202 D-amino acid dehydrogenase [dadA]. 1 411 49.064 T 17-10-2018 IPR023080 D-amino acid dehydrogenase DadA GO:0008718|GO:0019478|GO:0055114 VI35_11830 3c23e730d397e6aaccb8b4fb4b75276d 417 Gene3D G3DSA:3.30.9.10 134 362 3.0E-54 T 17-10-2018 VI35_11830 3c23e730d397e6aaccb8b4fb4b75276d 417 SUPERFAMILY SSF54373 270 360 1.96E-19 T 17-10-2018 VI35_11830 3c23e730d397e6aaccb8b4fb4b75276d 417 SUPERFAMILY SSF51905 1 416 5.83E-54 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_11830 3c23e730d397e6aaccb8b4fb4b75276d 417 Gene3D G3DSA:3.50.50.60 1 74 5.1E-15 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_16765 57e99fae758ebb7b58160f306fc0d24f 572 Gene3D G3DSA:3.40.50.970 365 564 1.1E-66 T 17-10-2018 VI35_16765 57e99fae758ebb7b58160f306fc0d24f 572 SUPERFAMILY SSF52518 372 565 6.63E-69 T 17-10-2018 IPR029061 Thiamin diphosphate-binding fold VI35_16765 57e99fae758ebb7b58160f306fc0d24f 572 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 394 543 2.0E-50 T 17-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 VI35_16765 57e99fae758ebb7b58160f306fc0d24f 572 Gene3D G3DSA:3.40.50.970 1 178 1.5E-71 T 17-10-2018 VI35_16765 57e99fae758ebb7b58160f306fc0d24f 572 Gene3D G3DSA:3.40.50.1220 190 360 1.8E-63 T 17-10-2018 VI35_16765 57e99fae758ebb7b58160f306fc0d24f 572 SUPERFAMILY SSF52518 2 180 6.68E-65 T 17-10-2018 IPR029061 Thiamin diphosphate-binding fold VI35_16765 57e99fae758ebb7b58160f306fc0d24f 572 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 167 1.7E-60 T 17-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 VI35_16765 57e99fae758ebb7b58160f306fc0d24f 572 SUPERFAMILY SSF52467 190 362 8.86E-65 T 17-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily VI35_16765 57e99fae758ebb7b58160f306fc0d24f 572 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 4 567 5.7E-268 T 17-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 VI35_16765 57e99fae758ebb7b58160f306fc0d24f 572 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 196 330 5.0E-47 T 17-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 VI35_12800 67098fc99705789075af3782a6126211 338 SUPERFAMILY SSF55347 131 321 2.32E-80 T 17-10-2018 VI35_12800 67098fc99705789075af3782a6126211 338 Gene3D G3DSA:3.40.50.720 7 332 1.2E-152 T 17-10-2018 VI35_12800 67098fc99705789075af3782a6126211 338 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 232 246 - T 17-10-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VI35_12800 67098fc99705789075af3782a6126211 338 SMART SM00859 6 121 3.6E-43 T 17-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 VI35_12800 67098fc99705789075af3782a6126211 338 Gene3D G3DSA:3.30.360.10 130 317 1.2E-152 T 17-10-2018 VI35_12800 67098fc99705789075af3782a6126211 338 SUPERFAMILY SSF51735 5 159 5.33E-54 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_12800 67098fc99705789075af3782a6126211 338 PIRSF PIRSF000148 4 338 2.5E-139 T 17-10-2018 VI35_12800 67098fc99705789075af3782a6126211 338 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 6 119 1.4E-31 T 17-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 VI35_12800 67098fc99705789075af3782a6126211 338 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 4 334 38.65 T 17-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VI35_12800 67098fc99705789075af3782a6126211 338 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 6 335 1.3E-137 T 17-10-2018 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VI35_12800 67098fc99705789075af3782a6126211 338 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 141 320 1.0E-64 T 17-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 VI35_06270 95b9017ff056ed272ed69b1c16eab7a0 210 Pfam PF01810 LysE type translocator 19 208 6.2E-20 T 17-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VI35_06270 95b9017ff056ed272ed69b1c16eab7a0 210 PIRSF PIRSF006324 5 210 2.7E-43 T 17-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VI35_17945 7166b56dfe357f333400e368812ce59b 173 Gene3D G3DSA:2.40.30.60 1 91 3.6E-30 T 17-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 VI35_17945 7166b56dfe357f333400e368812ce59b 173 SUPERFAMILY SSF50447 4 90 1.02E-22 T 17-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VI35_17945 7166b56dfe357f333400e368812ce59b 173 Pfam PF05239 PRC-barrel domain 94 168 2.1E-13 T 17-10-2018 IPR027275 PRC-barrel domain VI35_17945 7166b56dfe357f333400e368812ce59b 173 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 4 173 23.981 T 17-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 VI35_17945 7166b56dfe357f333400e368812ce59b 173 Pfam PF01782 RimM N-terminal domain 7 87 6.2E-24 T 17-10-2018 IPR002676 RimM, N-terminal GO:0006364 VI35_17945 7166b56dfe357f333400e368812ce59b 173 Gene3D G3DSA:2.30.30.240 92 173 4.7E-34 T 17-10-2018 VI35_17945 7166b56dfe357f333400e368812ce59b 173 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 5 173 2.5E-57 T 17-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 VI35_17945 7166b56dfe357f333400e368812ce59b 173 SUPERFAMILY SSF50346 97 173 1.02E-20 T 17-10-2018 IPR011033 PRC-barrel-like superfamily VI35_14845 faad375dbeb15f9680c086e6eec5f30e 1073 SMART SM00062 294 512 8.8E-23 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_14845 faad375dbeb15f9680c086e6eec5f30e 1073 SMART SM00062 49 270 1.6E-4 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_14845 faad375dbeb15f9680c086e6eec5f30e 1073 Gene3D G3DSA:1.10.287.130 693 770 4.4E-20 T 17-10-2018 VI35_14845 faad375dbeb15f9680c086e6eec5f30e 1073 SUPERFAMILY SSF47384 686 771 3.34E-17 T 17-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VI35_14845 faad375dbeb15f9680c086e6eec5f30e 1073 SUPERFAMILY SSF55785 556 681 3.81E-13 T 17-10-2018 IPR035965 PAS domain superfamily VI35_14845 faad375dbeb15f9680c086e6eec5f30e 1073 Gene3D G3DSA:3.40.50.12740 954 1072 2.2E-38 T 17-10-2018 VI35_14845 faad375dbeb15f9680c086e6eec5f30e 1073 SMART SM00387 816 929 2.4E-36 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_14845 faad375dbeb15f9680c086e6eec5f30e 1073 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 817 928 2.5E-26 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_14845 faad375dbeb15f9680c086e6eec5f30e 1073 Gene3D G3DSA:3.40.190.10 285 508 5.2E-49 T 17-10-2018 VI35_14845 faad375dbeb15f9680c086e6eec5f30e 1073 SUPERFAMILY SSF55874 759 931 1.96E-45 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_14845 faad375dbeb15f9680c086e6eec5f30e 1073 Pfam PF00072 Response regulator receiver domain 957 1066 1.5E-27 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_14845 faad375dbeb15f9680c086e6eec5f30e 1073 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 296 503 4.7E-24 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_14845 faad375dbeb15f9680c086e6eec5f30e 1073 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 568 690 1.8E-9 T 17-10-2018 IPR000014 PAS domain VI35_14845 faad375dbeb15f9680c086e6eec5f30e 1073 SMART SM00091 566 636 6.9E-4 T 17-10-2018 IPR000014 PAS domain VI35_14845 faad375dbeb15f9680c086e6eec5f30e 1073 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 50 267 1.5E-15 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_14845 faad375dbeb15f9680c086e6eec5f30e 1073 Pfam PF08448 PAS fold 573 685 2.1E-9 T 17-10-2018 IPR013656 PAS fold-4 VI35_14845 faad375dbeb15f9680c086e6eec5f30e 1073 Gene3D G3DSA:3.40.190.10 136 229 1.6E-43 T 17-10-2018 VI35_14845 faad375dbeb15f9680c086e6eec5f30e 1073 PRINTS PR00344 Bacterial sensor protein C-terminal signature 856 870 1.5E-14 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_14845 faad375dbeb15f9680c086e6eec5f30e 1073 PRINTS PR00344 Bacterial sensor protein C-terminal signature 874 884 1.5E-14 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_14845 faad375dbeb15f9680c086e6eec5f30e 1073 PRINTS PR00344 Bacterial sensor protein C-terminal signature 889 907 1.5E-14 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_14845 faad375dbeb15f9680c086e6eec5f30e 1073 PRINTS PR00344 Bacterial sensor protein C-terminal signature 913 926 1.5E-14 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_14845 faad375dbeb15f9680c086e6eec5f30e 1073 SMART SM00448 955 1066 1.5E-35 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_14845 faad375dbeb15f9680c086e6eec5f30e 1073 SMART SM00388 703 769 1.5E-16 T 17-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VI35_14845 faad375dbeb15f9680c086e6eec5f30e 1073 SUPERFAMILY SSF53850 287 513 1.57E-32 T 17-10-2018 VI35_14845 faad375dbeb15f9680c086e6eec5f30e 1073 Gene3D G3DSA:3.40.190.10 40 266 1.6E-43 T 17-10-2018 VI35_14845 faad375dbeb15f9680c086e6eec5f30e 1073 Gene3D G3DSA:3.30.565.10 771 933 2.0E-44 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_14845 faad375dbeb15f9680c086e6eec5f30e 1073 SUPERFAMILY SSF53850 50 267 7.25E-26 T 17-10-2018 VI35_14845 faad375dbeb15f9680c086e6eec5f30e 1073 Gene3D G3DSA:3.30.450.20 550 692 3.9E-19 T 17-10-2018 VI35_14845 faad375dbeb15f9680c086e6eec5f30e 1073 Pfam PF00512 His Kinase A (phospho-acceptor) domain 703 769 2.4E-14 T 17-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VI35_14845 faad375dbeb15f9680c086e6eec5f30e 1073 SUPERFAMILY SSF52172 953 1069 1.42E-37 T 17-10-2018 IPR011006 CheY-like superfamily VI35_14845 faad375dbeb15f9680c086e6eec5f30e 1073 Gene3D G3DSA:3.40.190.10 380 471 5.2E-49 T 17-10-2018 VI35_02745 16b468d09354075eee8ffb56c469a375 126 Gene3D G3DSA:2.40.50.200 13 115 1.2E-32 T 17-10-2018 IPR036700 Bacterial OB-fold superfamily VI35_02745 16b468d09354075eee8ffb56c469a375 126 Pfam PF04076 Bacterial OB fold (BOF) protein 22 112 4.1E-27 T 17-10-2018 IPR005220 Bacterial OB-fold VI35_02745 16b468d09354075eee8ffb56c469a375 126 SUPERFAMILY SSF101756 10 112 2.88E-33 T 17-10-2018 IPR036700 Bacterial OB-fold superfamily VI35_14730 37c7606efa5638ff1d906c22983c4cc5 408 Pfam PF12320 Type 5 capsule protein repressor C-terminal domain 283 383 4.6E-12 T 17-10-2018 IPR026843 Nuclease SbcCD subunit D, C-terminal domain VI35_14730 37c7606efa5638ff1d906c22983c4cc5 408 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 1 259 9.7E-56 T 17-10-2018 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 VI35_14730 37c7606efa5638ff1d906c22983c4cc5 408 SUPERFAMILY SSF56300 1 337 6.39E-48 T 17-10-2018 VI35_14730 37c7606efa5638ff1d906c22983c4cc5 408 Gene3D G3DSA:3.60.21.10 1 281 9.9E-76 T 17-10-2018 IPR029052 Metallo-dependent phosphatase-like VI35_14730 37c7606efa5638ff1d906c22983c4cc5 408 Pfam PF00149 Calcineurin-like phosphoesterase 1 96 4.1E-12 T 17-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 VI35_03220 02ba3dbf2cd023931203fab89d963f90 592 Gene3D G3DSA:3.40.30.10 467 591 1.4E-32 T 17-10-2018 VI35_03220 02ba3dbf2cd023931203fab89d963f90 592 SUPERFAMILY SSF74863 40 151 7.32E-34 T 17-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily VI35_03220 02ba3dbf2cd023931203fab89d963f90 592 SUPERFAMILY SSF52833 473 590 7.31E-25 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_03220 02ba3dbf2cd023931203fab89d963f90 592 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 198 401 1.2E-16 T 17-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 VI35_03220 02ba3dbf2cd023931203fab89d963f90 592 ProSitePatterns PS00194 Thioredoxin family active site. 500 518 - T 17-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 VI35_03220 02ba3dbf2cd023931203fab89d963f90 592 Pfam PF11412 Disulphide bond corrector protein DsbC 41 151 2.8E-30 T 17-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain VI35_03220 02ba3dbf2cd023931203fab89d963f90 592 Hamap MF_00399 Thiol:disulfide interchange protein DsbD [dsbD]. 7 592 36.206 T 17-10-2018 IPR022910 Thiol:disulphide interchange protein DsbD GO:0047134|GO:0055114 VI35_03220 02ba3dbf2cd023931203fab89d963f90 592 Gene3D G3DSA:2.60.40.1250 35 168 9.9E-38 T 17-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily VI35_03220 02ba3dbf2cd023931203fab89d963f90 592 Pfam PF13899 Thioredoxin-like 489 564 7.2E-12 T 17-10-2018 VI35_10640 4ec5d90aaf9cae25b8a0f1866f8e415a 308 SUPERFAMILY SSF46785 4 88 3.91E-20 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_10640 4ec5d90aaf9cae25b8a0f1866f8e415a 308 Gene3D G3DSA:1.10.10.10 3 90 9.7E-26 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_10640 4ec5d90aaf9cae25b8a0f1866f8e415a 308 Gene3D G3DSA:3.40.190.290 92 295 1.8E-53 T 17-10-2018 VI35_10640 4ec5d90aaf9cae25b8a0f1866f8e415a 308 Pfam PF03466 LysR substrate binding domain 89 296 5.6E-36 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_10640 4ec5d90aaf9cae25b8a0f1866f8e415a 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 1.0E-15 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_10640 4ec5d90aaf9cae25b8a0f1866f8e415a 308 SUPERFAMILY SSF53850 89 299 1.21E-36 T 17-10-2018 VI35_19910 4cc083080476f06e73d463fd58b24033 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 232 6.6E-23 T 17-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VI35_19910 4cc083080476f06e73d463fd58b24033 239 Pfam PF00072 Response regulator receiver domain 7 117 1.1E-29 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_19910 4cc083080476f06e73d463fd58b24033 239 Gene3D G3DSA:3.40.50.2300 1 125 3.2E-41 T 17-10-2018 VI35_19910 4cc083080476f06e73d463fd58b24033 239 SUPERFAMILY SSF46894 133 234 3.12E-27 T 17-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VI35_19910 4cc083080476f06e73d463fd58b24033 239 SMART SM00862 156 232 2.8E-24 T 17-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VI35_19910 4cc083080476f06e73d463fd58b24033 239 SUPERFAMILY SSF52172 3 126 4.41E-43 T 17-10-2018 IPR011006 CheY-like superfamily VI35_19910 4cc083080476f06e73d463fd58b24033 239 SMART SM00448 5 116 1.7E-44 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_19910 4cc083080476f06e73d463fd58b24033 239 Gene3D G3DSA:1.10.10.10 130 239 4.2E-38 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_14120 99eb791a84fc342e9db0873dd9bdb7f7 453 Pfam PF07690 Major Facilitator Superfamily 20 354 7.1E-44 T 17-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VI35_14120 99eb791a84fc342e9db0873dd9bdb7f7 453 SUPERFAMILY SSF103473 6 390 9.02E-66 T 17-10-2018 IPR036259 MFS transporter superfamily VI35_14120 99eb791a84fc342e9db0873dd9bdb7f7 453 Gene3D G3DSA:3.30.70.100 390 452 2.5E-22 T 17-10-2018 VI35_14120 99eb791a84fc342e9db0873dd9bdb7f7 453 Gene3D G3DSA:1.20.1250.20 3 389 1.2E-98 T 17-10-2018 VI35_16465 e1365c08aec3b7bbdb6e86762f2690f9 555 SMART SM00382 31 236 2.5E-8 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_16465 e1365c08aec3b7bbdb6e86762f2690f9 555 SMART SM00382 348 521 6.8E-13 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_16465 e1365c08aec3b7bbdb6e86762f2690f9 555 Pfam PF12848 ABC transporter 230 303 1.8E-11 T 17-10-2018 IPR032781 ABC-transporter extension domain VI35_16465 e1365c08aec3b7bbdb6e86762f2690f9 555 Gene3D G3DSA:3.40.50.300 1 285 1.0E-87 T 17-10-2018 VI35_16465 e1365c08aec3b7bbdb6e86762f2690f9 555 Gene3D G3DSA:3.40.50.300 286 555 3.5E-78 T 17-10-2018 VI35_16465 e1365c08aec3b7bbdb6e86762f2690f9 555 Pfam PF00005 ABC transporter 22 191 5.8E-31 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_16465 e1365c08aec3b7bbdb6e86762f2690f9 555 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_16465 e1365c08aec3b7bbdb6e86762f2690f9 555 Pfam PF00005 ABC transporter 340 473 2.3E-24 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_16465 e1365c08aec3b7bbdb6e86762f2690f9 555 SUPERFAMILY SSF52540 11 243 4.88E-49 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_16465 e1365c08aec3b7bbdb6e86762f2690f9 555 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 2 553 1.7E-295 T 17-10-2018 IPR022374 Energy-dependent translational throttle protein EttA GO:0045900 VI35_16465 e1365c08aec3b7bbdb6e86762f2690f9 555 SUPERFAMILY SSF52540 302 528 4.09E-48 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_05865 c7e4531d40bdbb1ef38af7a26c810ff5 141 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 4 116 4.3E-41 T 17-10-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 VI35_05865 c7e4531d40bdbb1ef38af7a26c810ff5 141 Pfam PF03960 ArsC family 7 114 2.8E-19 T 17-10-2018 IPR006660 Arsenate reductase-like VI35_05865 c7e4531d40bdbb1ef38af7a26c810ff5 141 Gene3D G3DSA:3.40.30.10 1 141 5.4E-61 T 17-10-2018 VI35_05865 c7e4531d40bdbb1ef38af7a26c810ff5 141 SUPERFAMILY SSF52833 4 136 5.79E-40 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_18945 7fe93cdd95d26ffe7805df370ea861be 230 SUPERFAMILY SSF52833 16 105 4.66E-20 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_18945 7fe93cdd95d26ffe7805df370ea861be 230 Gene3D G3DSA:1.20.1050.10 105 219 1.8E-32 T 17-10-2018 VI35_18945 7fe93cdd95d26ffe7805df370ea861be 230 SUPERFAMILY SSF47616 102 220 1.53E-22 T 17-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily VI35_18945 7fe93cdd95d26ffe7805df370ea861be 230 Pfam PF02798 Glutathione S-transferase, N-terminal domain 22 94 1.9E-15 T 17-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 VI35_18945 7fe93cdd95d26ffe7805df370ea861be 230 Pfam PF00043 Glutathione S-transferase, C-terminal domain 146 213 1.3E-11 T 17-10-2018 IPR004046 Glutathione S-transferase, C-terminal VI35_18945 7fe93cdd95d26ffe7805df370ea861be 230 Gene3D G3DSA:3.40.30.10 20 104 5.1E-34 T 17-10-2018 VI35_16035 6116fccc9ec50da830db251360565b60 416 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 252 407 2.2E-43 T 17-10-2018 IPR031475 Four-carbon acid sugar kinase, C-terminal domain VI35_16035 6116fccc9ec50da830db251360565b60 416 Gene3D G3DSA:3.40.50.10840 1 233 5.4E-86 T 17-10-2018 IPR037051 Four-carbon acid sugar kinase, N-terminal domain superfamily VI35_16035 6116fccc9ec50da830db251360565b60 416 Gene3D G3DSA:3.40.980.20 242 415 8.2E-63 T 17-10-2018 VI35_16035 6116fccc9ec50da830db251360565b60 416 Pfam PF07005 Putative sugar-binding N-terminal domain 3 226 1.0E-69 T 17-10-2018 IPR010737 Four-carbon acid sugar kinase, N-terminal domain VI35_16035 6116fccc9ec50da830db251360565b60 416 SUPERFAMILY SSF142764 3 414 9.42E-131 T 17-10-2018 VI35_02755 2bb5129b8b1e0bf064c526e8ab9bb267 90 Pfam PF04362 Bacterial Fe(2+) trafficking 1 88 6.5E-40 T 17-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 VI35_02755 2bb5129b8b1e0bf064c526e8ab9bb267 90 SUPERFAMILY SSF111148 1 89 1.01E-39 T 17-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 VI35_02755 2bb5129b8b1e0bf064c526e8ab9bb267 90 PIRSF PIRSF029827 1 90 5.2E-41 T 17-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 VI35_02755 2bb5129b8b1e0bf064c526e8ab9bb267 90 Gene3D G3DSA:1.10.3880.10 1 90 2.6E-38 T 17-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 VI35_02755 2bb5129b8b1e0bf064c526e8ab9bb267 90 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 1 76 2.0E-32 T 17-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 VI35_02755 2bb5129b8b1e0bf064c526e8ab9bb267 90 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 27.151 T 17-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 VI35_14990 6c49b763d7340fac9b64b19d4774440f 316 SUPERFAMILY SSF143422 16 193 7.72E-20 T 17-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 VI35_14990 6c49b763d7340fac9b64b19d4774440f 316 SMART SM01321 12 187 3.6E-4 T 17-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 VI35_09675 62c061518aa7e93b270c4adf42d9d6fb 261 Gene3D G3DSA:3.40.50.300 4 261 1.8E-67 T 17-10-2018 VI35_09675 62c061518aa7e93b270c4adf42d9d6fb 261 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_09675 62c061518aa7e93b270c4adf42d9d6fb 261 Pfam PF00005 ABC transporter 32 179 2.4E-30 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_09675 62c061518aa7e93b270c4adf42d9d6fb 261 SUPERFAMILY SSF52540 6 251 1.57E-57 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_09675 62c061518aa7e93b270c4adf42d9d6fb 261 SMART SM00382 40 229 6.7E-14 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_04910 6af2bb7db5b2dec8cd0ae3f1c17e1b1f 712 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 9 690 0.0 T 17-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 VI35_04910 6af2bb7db5b2dec8cd0ae3f1c17e1b1f 712 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 2 692 30.236 T 17-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 VI35_04910 6af2bb7db5b2dec8cd0ae3f1c17e1b1f 712 SUPERFAMILY SSF46915 237 319 9.15E-17 T 17-10-2018 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 VI35_04910 6af2bb7db5b2dec8cd0ae3f1c17e1b1f 712 Gene3D G3DSA:3.30.230.70 1 229 3.1E-79 T 17-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VI35_04910 6af2bb7db5b2dec8cd0ae3f1c17e1b1f 712 SUPERFAMILY SSF55666 449 547 8.51E-28 T 17-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VI35_04910 6af2bb7db5b2dec8cd0ae3f1c17e1b1f 712 SMART SM00322 551 616 2.3E-11 T 17-10-2018 IPR004087 K Homology domain GO:0003676 VI35_04910 6af2bb7db5b2dec8cd0ae3f1c17e1b1f 712 PIRSF PIRSF005499 1 710 2.1E-297 T 17-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 VI35_04910 6af2bb7db5b2dec8cd0ae3f1c17e1b1f 712 SUPERFAMILY SSF54211 3 143 1.62E-50 T 17-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VI35_04910 6af2bb7db5b2dec8cd0ae3f1c17e1b1f 712 SMART SM00316 619 689 1.9E-25 T 17-10-2018 IPR022967 RNA-binding domain, S1 VI35_04910 6af2bb7db5b2dec8cd0ae3f1c17e1b1f 712 Gene3D G3DSA:3.30.230.70 232 548 7.9E-115 T 17-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VI35_04910 6af2bb7db5b2dec8cd0ae3f1c17e1b1f 712 SUPERFAMILY SSF54791 551 628 2.78E-15 T 17-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 VI35_04910 6af2bb7db5b2dec8cd0ae3f1c17e1b1f 712 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 240 319 5.1E-20 T 17-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 VI35_04910 6af2bb7db5b2dec8cd0ae3f1c17e1b1f 712 Gene3D G3DSA:2.40.50.140 621 693 7.4E-29 T 17-10-2018 VI35_04910 6af2bb7db5b2dec8cd0ae3f1c17e1b1f 712 Gene3D G3DSA:3.30.1370.10 549 620 3.4E-18 T 17-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 VI35_04910 6af2bb7db5b2dec8cd0ae3f1c17e1b1f 712 Pfam PF01138 3' exoribonuclease family, domain 1 15 143 1.3E-19 T 17-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VI35_04910 6af2bb7db5b2dec8cd0ae3f1c17e1b1f 712 Pfam PF01138 3' exoribonuclease family, domain 1 323 455 4.1E-22 T 17-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VI35_04910 6af2bb7db5b2dec8cd0ae3f1c17e1b1f 712 SUPERFAMILY SSF55666 144 235 6.02E-30 T 17-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VI35_04910 6af2bb7db5b2dec8cd0ae3f1c17e1b1f 712 SUPERFAMILY SSF50249 606 691 1.88E-21 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_04910 6af2bb7db5b2dec8cd0ae3f1c17e1b1f 712 SUPERFAMILY SSF54211 292 487 1.72E-46 T 17-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VI35_04910 6af2bb7db5b2dec8cd0ae3f1c17e1b1f 712 Pfam PF00013 KH domain 555 612 2.1E-9 T 17-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 VI35_04910 6af2bb7db5b2dec8cd0ae3f1c17e1b1f 712 Pfam PF00575 S1 RNA binding domain 618 689 5.3E-19 T 17-10-2018 IPR003029 S1 domain GO:0003676 VI35_04910 6af2bb7db5b2dec8cd0ae3f1c17e1b1f 712 Pfam PF03725 3' exoribonuclease family, domain 2 146 208 2.5E-12 T 17-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VI35_04910 6af2bb7db5b2dec8cd0ae3f1c17e1b1f 712 Pfam PF03725 3' exoribonuclease family, domain 2 459 526 5.5E-5 T 17-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VI35_07155 088293dfdba132a2f8d55b92222d92e9 379 Pfam PF01817 Chorismate mutase type II 9 86 3.7E-20 T 17-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 VI35_07155 088293dfdba132a2f8d55b92222d92e9 379 SUPERFAMILY SSF51735 95 241 1.06E-35 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_07155 088293dfdba132a2f8d55b92222d92e9 379 SUPERFAMILY SSF48179 246 369 3.51E-40 T 17-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VI35_07155 088293dfdba132a2f8d55b92222d92e9 379 SMART SM00830 9 89 2.6E-30 T 17-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 VI35_07155 088293dfdba132a2f8d55b92222d92e9 379 Gene3D G3DSA:3.40.50.720 82 250 2.0E-40 T 17-10-2018 VI35_07155 088293dfdba132a2f8d55b92222d92e9 379 Gene3D G3DSA:1.10.3660.10 252 378 2.4E-48 T 17-10-2018 VI35_07155 088293dfdba132a2f8d55b92222d92e9 379 PIRSF PIRSF001499 1 378 9.7E-161 T 17-10-2018 IPR008244 Bifunctional chorismate mutase/prephenate dehydrogenase T-protein GO:0004106|GO:0005737|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+5.4.99.5+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7303|MetaCyc: PWY-7626 VI35_07155 088293dfdba132a2f8d55b92222d92e9 379 Gene3D G3DSA:1.20.59.10 1 81 8.5E-18 T 17-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 VI35_07155 088293dfdba132a2f8d55b92222d92e9 379 SUPERFAMILY SSF48600 3 86 4.03E-23 T 17-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 VI35_07155 088293dfdba132a2f8d55b92222d92e9 379 TIGRFAM TIGR01799 CM_T: chorismate mutase 5 86 2.6E-40 T 17-10-2018 IPR011277 Chorismate mutase, T-protein GO:0004106|GO:0005737|GO:0006571|GO:0055114 KEGG: 00400+5.4.99.5+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7303|MetaCyc: PWY-7626 VI35_07155 088293dfdba132a2f8d55b92222d92e9 379 Pfam PF02153 Prephenate dehydrogenase 142 348 1.7E-27 T 17-10-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 VI35_12665 8a9eda5cddac1d371d5bc3c735d31da2 249 Gene3D G3DSA:3.40.50.1000 5 231 6.8E-79 T 17-10-2018 IPR023214 HAD superfamily VI35_12665 8a9eda5cddac1d371d5bc3c735d31da2 249 Pfam PF13344 Haloacid dehalogenase-like hydrolase 5 104 2.8E-22 T 17-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA VI35_12665 8a9eda5cddac1d371d5bc3c735d31da2 249 Gene3D G3DSA:3.40.50.1000 70 173 6.8E-79 T 17-10-2018 IPR023214 HAD superfamily VI35_12665 8a9eda5cddac1d371d5bc3c735d31da2 249 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 5 222 1.6E-56 T 17-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA VI35_12665 8a9eda5cddac1d371d5bc3c735d31da2 249 Pfam PF13242 HAD-hyrolase-like 173 245 9.6E-20 T 17-10-2018 VI35_12665 8a9eda5cddac1d371d5bc3c735d31da2 249 SUPERFAMILY SSF56784 1 246 1.57E-60 T 17-10-2018 IPR036412 HAD-like superfamily VI35_03960 c0e5aae5ccde4242dc6aa2e44def558e 590 Gene3D G3DSA:3.10.450.40 106 184 3.9E-22 T 17-10-2018 VI35_03960 c0e5aae5ccde4242dc6aa2e44def558e 590 Pfam PF01447 Thermolysin metallopeptidase, catalytic domain 195 330 4.9E-37 T 17-10-2018 IPR013856 Peptidase M4 domain GO:0004222 VI35_03960 c0e5aae5ccde4242dc6aa2e44def558e 590 Pfam PF02868 Thermolysin metallopeptidase, alpha-helical domain 333 477 5.1E-37 T 17-10-2018 IPR001570 Peptidase M4, C-terminal GO:0004222 VI35_03960 c0e5aae5ccde4242dc6aa2e44def558e 590 Gene3D G3DSA:1.10.390.10 335 485 1.1E-51 T 17-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily VI35_03960 c0e5aae5ccde4242dc6aa2e44def558e 590 Gene3D G3DSA:2.60.120.380 489 590 1.7E-41 T 17-10-2018 VI35_03960 c0e5aae5ccde4242dc6aa2e44def558e 590 Pfam PF04151 Bacterial pre-peptidase C-terminal domain 511 576 3.6E-14 T 17-10-2018 IPR007280 Peptidase, C-terminal, archaeal/bacterial VI35_03960 c0e5aae5ccde4242dc6aa2e44def558e 590 Gene3D G3DSA:3.10.170.10 185 334 1.5E-64 T 17-10-2018 VI35_03960 c0e5aae5ccde4242dc6aa2e44def558e 590 Pfam PF03413 Peptidase propeptide and YPEB domain 118 179 1.4E-5 T 17-10-2018 IPR025711 PepSY domain VI35_03960 c0e5aae5ccde4242dc6aa2e44def558e 590 SUPERFAMILY SSF55486 186 478 2.2E-90 T 17-10-2018 VI35_03960 c0e5aae5ccde4242dc6aa2e44def558e 590 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 287 307 1.4E-27 T 17-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 VI35_03960 c0e5aae5ccde4242dc6aa2e44def558e 590 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 321 337 1.4E-27 T 17-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 VI35_03960 c0e5aae5ccde4242dc6aa2e44def558e 590 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 342 353 1.4E-27 T 17-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 VI35_03960 c0e5aae5ccde4242dc6aa2e44def558e 590 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 404 420 1.4E-27 T 17-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 VI35_03960 c0e5aae5ccde4242dc6aa2e44def558e 590 Gene3D G3DSA:3.10.450.490 16 105 1.7E-9 T 17-10-2018 VI35_03960 c0e5aae5ccde4242dc6aa2e44def558e 590 Pfam PF07504 Fungalysin/Thermolysin Propeptide Motif 50 98 1.5E-11 T 17-10-2018 IPR011096 FTP domain VI35_15150 9a7862aa3a1d1821d4b3c6ed861cd1e4 337 Pfam PF01061 ABC-2 type transporter 136 302 2.3E-29 T 17-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 VI35_19590 a4eb63d97a1a71edbbad4f3115f8ec94 365 Pfam PF00487 Fatty acid desaturase 31 254 1.2E-21 T 17-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 VI35_19590 a4eb63d97a1a71edbbad4f3115f8ec94 365 PRINTS PR00075 Fatty acid desaturase family 1 signature 179 200 6.7E-22 T 17-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 VI35_19590 a4eb63d97a1a71edbbad4f3115f8ec94 365 PRINTS PR00075 Fatty acid desaturase family 1 signature 222 236 6.7E-22 T 17-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 VI35_19590 a4eb63d97a1a71edbbad4f3115f8ec94 365 PRINTS PR00075 Fatty acid desaturase family 1 signature 89 118 6.7E-22 T 17-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 VI35_19590 a4eb63d97a1a71edbbad4f3115f8ec94 365 PRINTS PR00075 Fatty acid desaturase family 1 signature 1 18 6.7E-22 T 17-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 VI35_01210 99071379bf702a383aea18609dd1ec37 218 SMART SM00448 1 112 1.9E-37 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_01210 99071379bf702a383aea18609dd1ec37 218 SUPERFAMILY SSF52172 1 181 1.45E-37 T 17-10-2018 IPR011006 CheY-like superfamily VI35_01210 99071379bf702a383aea18609dd1ec37 218 Gene3D G3DSA:1.10.10.10 120 218 7.6E-30 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_01210 99071379bf702a383aea18609dd1ec37 218 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 216 7.3E-24 T 17-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VI35_01210 99071379bf702a383aea18609dd1ec37 218 SMART SM00862 145 216 5.7E-26 T 17-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VI35_01210 99071379bf702a383aea18609dd1ec37 218 Pfam PF00072 Response regulator receiver domain 3 113 6.4E-25 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_01210 99071379bf702a383aea18609dd1ec37 218 Gene3D G3DSA:3.40.50.2300 1 119 7.0E-40 T 17-10-2018 VI35_09220 a00440b20451e4ed220d681cd38cffcc 428 Pfam PF02264 LamB porin 28 428 1.6E-109 T 17-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 VI35_09220 a00440b20451e4ed220d681cd38cffcc 428 SUPERFAMILY SSF56935 26 428 1.4E-112 T 17-10-2018 VI35_09220 a00440b20451e4ed220d681cd38cffcc 428 Gene3D G3DSA:2.40.170.10 26 428 1.3E-115 T 17-10-2018 IPR036998 Porin, LamB-type superfamily GO:0015288|GO:0016020|GO:0034219 VI35_09220 a00440b20451e4ed220d681cd38cffcc 428 Hamap MF_01301 Maltoporin [lamB]. 4 428 43.693 T 17-10-2018 IPR023738 Maltoporin GO:0009279|GO:0015481|GO:0015768|GO:0042956|GO:0042958 VI35_09220 a00440b20451e4ed220d681cd38cffcc 428 ProDom PD008788 PORIN MEMBRANE PRECURSOR SIGNAL MALTOPORIN OUTER ION TRANSMEMBRANE RECEPTOR LAMB 33 423 9.0E-120 T 17-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 VI35_15685 ce1654c5836c6eb261879aa2912f390a 711 Pfam PF02743 Cache domain 52 331 1.0E-16 T 17-10-2018 IPR033479 Double Cache domain 1 VI35_15685 ce1654c5836c6eb261879aa2912f390a 711 Gene3D G3DSA:1.10.287.950 379 711 2.0E-73 T 17-10-2018 VI35_15685 ce1654c5836c6eb261879aa2912f390a 711 Gene3D G3DSA:3.30.450.20 239 269 2.0E-33 T 17-10-2018 VI35_15685 ce1654c5836c6eb261879aa2912f390a 711 Gene3D G3DSA:3.30.450.20 101 238 2.0E-33 T 17-10-2018 VI35_15685 ce1654c5836c6eb261879aa2912f390a 711 SUPERFAMILY SSF58104 402 711 6.28E-78 T 17-10-2018 VI35_15685 ce1654c5836c6eb261879aa2912f390a 711 SMART SM00304 380 434 4.7E-13 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_15685 ce1654c5836c6eb261879aa2912f390a 711 Pfam PF00672 HAMP domain 381 430 1.6E-9 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_15685 ce1654c5836c6eb261879aa2912f390a 711 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 576 605 3.2E-5 T 17-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VI35_15685 ce1654c5836c6eb261879aa2912f390a 711 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 477 506 3.2E-5 T 17-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VI35_15685 ce1654c5836c6eb261879aa2912f390a 711 SMART SM00283 449 710 5.2E-68 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_15685 ce1654c5836c6eb261879aa2912f390a 711 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 495 677 7.0E-45 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_00380 40c1b19478b8b6037774186a8ead9fa6 493 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 22 487 38.248 T 17-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 VI35_00380 40c1b19478b8b6037774186a8ead9fa6 493 Gene3D G3DSA:1.10.1040.10 209 493 4.8E-120 T 17-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 VI35_00380 40c1b19478b8b6037774186a8ead9fa6 493 SUPERFAMILY SSF48179 348 486 2.04E-40 T 17-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VI35_00380 40c1b19478b8b6037774186a8ead9fa6 493 SUPERFAMILY SSF48179 210 370 1.02E-40 T 17-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VI35_00380 40c1b19478b8b6037774186a8ead9fa6 493 SUPERFAMILY SSF51735 28 209 4.17E-58 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_00380 40c1b19478b8b6037774186a8ead9fa6 493 Gene3D G3DSA:3.40.50.720 1 208 1.4E-85 T 17-10-2018 VI35_00380 40c1b19478b8b6037774186a8ead9fa6 493 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 35 367 1.5E-129 T 17-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 VI35_00380 40c1b19478b8b6037774186a8ead9fa6 493 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 34 204 1.8E-58 T 17-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 VI35_00380 40c1b19478b8b6037774186a8ead9fa6 493 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 352 484 2.8E-21 T 17-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 VI35_00380 40c1b19478b8b6037774186a8ead9fa6 493 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 210 342 3.8E-26 T 17-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 VI35_10825 bd0c171fef5ae4ecedb8d9d623864950 333 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 3 332 32.312 T 17-10-2018 IPR003770 Endolytic murein transglycosylase VI35_10825 bd0c171fef5ae4ecedb8d9d623864950 333 Pfam PF02618 YceG-like family 43 326 1.6E-81 T 17-10-2018 IPR003770 Endolytic murein transglycosylase VI35_10825 bd0c171fef5ae4ecedb8d9d623864950 333 Gene3D G3DSA:3.30.160.60 300 332 3.3E-13 T 17-10-2018 VI35_10825 bd0c171fef5ae4ecedb8d9d623864950 333 Gene3D G3DSA:3.30.160.60 71 107 5.1E-7 T 17-10-2018 VI35_10825 bd0c171fef5ae4ecedb8d9d623864950 333 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 17 330 1.9E-91 T 17-10-2018 IPR003770 Endolytic murein transglycosylase VI35_00710 24d90cc6767449a1090d072202f0c0e2 609 SUPERFAMILY SSF51445 115 527 4.15E-106 T 17-10-2018 IPR017853 Glycoside hydrolase superfamily VI35_00710 24d90cc6767449a1090d072202f0c0e2 609 Gene3D G3DSA:2.60.40.1180 522 608 1.3E-18 T 17-10-2018 IPR013780 Glycosyl hydrolase, all-beta VI35_00710 24d90cc6767449a1090d072202f0c0e2 609 SUPERFAMILY SSF81296 1 110 3.83E-16 T 17-10-2018 IPR014756 Immunoglobulin E-set VI35_00710 24d90cc6767449a1090d072202f0c0e2 609 SMART SM00642 127 518 1.0E-96 T 17-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VI35_00710 24d90cc6767449a1090d072202f0c0e2 609 Pfam PF00128 Alpha amylase, catalytic domain 178 490 5.1E-77 T 17-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VI35_00710 24d90cc6767449a1090d072202f0c0e2 609 SUPERFAMILY SSF51011 532 606 9.0E-14 T 17-10-2018 VI35_00710 24d90cc6767449a1090d072202f0c0e2 609 PIRSF PIRSF036918 1 609 2.9E-244 T 17-10-2018 IPR017069 Maltodextrin glucosidase GO:0004558|GO:0005737|GO:0005975 KEGG: 00052+3.2.1.20|KEGG: 00500+3.2.1.20|MetaCyc: PWY-842 VI35_00710 24d90cc6767449a1090d072202f0c0e2 609 Gene3D G3DSA:3.20.20.80 115 520 2.3E-143 T 17-10-2018 VI35_04995 ffecab15077d89ea5b0ad1b8a2b31d95 393 Pfam PF13649 Methyltransferase domain 191 264 3.0E-12 T 17-10-2018 VI35_04995 ffecab15077d89ea5b0ad1b8a2b31d95 393 Pfam PF13411 MerR HTH family regulatory protein 1 61 6.4E-16 T 17-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VI35_04995 ffecab15077d89ea5b0ad1b8a2b31d95 393 Gene3D G3DSA:3.40.50.150 145 392 1.9E-40 T 17-10-2018 VI35_04995 ffecab15077d89ea5b0ad1b8a2b31d95 393 SUPERFAMILY SSF53335 140 381 3.35E-27 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_04995 ffecab15077d89ea5b0ad1b8a2b31d95 393 SUPERFAMILY SSF46955 1 101 2.67E-22 T 17-10-2018 IPR009061 Putative DNA-binding domain superfamily VI35_04995 ffecab15077d89ea5b0ad1b8a2b31d95 393 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 4.5E-6 T 17-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VI35_04995 ffecab15077d89ea5b0ad1b8a2b31d95 393 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 36 56 4.5E-6 T 17-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VI35_04995 ffecab15077d89ea5b0ad1b8a2b31d95 393 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 4.5E-6 T 17-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VI35_04995 ffecab15077d89ea5b0ad1b8a2b31d95 393 SMART SM00422 1 69 5.9E-19 T 17-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VI35_04995 ffecab15077d89ea5b0ad1b8a2b31d95 393 Gene3D G3DSA:1.10.1660.10 1 111 4.0E-23 T 17-10-2018 VI35_00845 f7a907d66536e5ad9a407d22b2d5a120 468 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 216 448 1.0E-89 T 17-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VI35_00845 f7a907d66536e5ad9a407d22b2d5a120 468 Hamap MF_01646 Siroheme synthase [cysG]. 1 458 52.623 T 17-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VI35_00845 f7a907d66536e5ad9a407d22b2d5a120 468 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 204 3.0E-72 T 17-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VI35_00845 f7a907d66536e5ad9a407d22b2d5a120 468 ProSitePatterns PS00213 Lipocalin signature. 64 77 - T 17-10-2018 IPR022272 Lipocalin family conserved site VI35_00845 f7a907d66536e5ad9a407d22b2d5a120 468 SUPERFAMILY SSF75615 114 207 8.63E-28 T 17-10-2018 VI35_00845 f7a907d66536e5ad9a407d22b2d5a120 468 Gene3D G3DSA:3.40.50.720 1 112 2.1E-35 T 17-10-2018 VI35_00845 f7a907d66536e5ad9a407d22b2d5a120 468 Pfam PF13241 Putative NAD(P)-binding 6 115 2.5E-27 T 17-10-2018 VI35_00845 f7a907d66536e5ad9a407d22b2d5a120 468 PIRSF PIRSF036426 1 466 5.3E-202 T 17-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VI35_00845 f7a907d66536e5ad9a407d22b2d5a120 468 SUPERFAMILY SSF53790 214 455 5.23E-80 T 17-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 VI35_00845 f7a907d66536e5ad9a407d22b2d5a120 468 Pfam PF10414 Sirohaem synthase dimerisation region 150 207 2.0E-17 T 17-10-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VI35_00845 f7a907d66536e5ad9a407d22b2d5a120 468 Pfam PF14824 Sirohaem biosynthesis protein central 119 145 4.2E-9 T 17-10-2018 IPR028281 Siroheme synthase, central domain KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VI35_00845 f7a907d66536e5ad9a407d22b2d5a120 468 SUPERFAMILY SSF51735 1 112 2.73E-27 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_00845 f7a907d66536e5ad9a407d22b2d5a120 468 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 296 329 - T 17-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VI35_00845 f7a907d66536e5ad9a407d22b2d5a120 468 Gene3D G3DSA:3.30.950.10 332 467 1.6E-47 T 17-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 VI35_00845 f7a907d66536e5ad9a407d22b2d5a120 468 Gene3D G3DSA:1.10.8.210 149 212 2.9E-20 T 17-10-2018 IPR037115 Sirohaem synthase, dimerisation domain superfamily GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VI35_00845 f7a907d66536e5ad9a407d22b2d5a120 468 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 218 427 4.8E-49 T 17-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 VI35_00845 f7a907d66536e5ad9a407d22b2d5a120 468 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 221 235 - T 17-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VI35_00845 f7a907d66536e5ad9a407d22b2d5a120 468 Gene3D G3DSA:3.30.160.110 113 148 2.7E-20 T 17-10-2018 VI35_00845 f7a907d66536e5ad9a407d22b2d5a120 468 Gene3D G3DSA:3.40.1010.10 215 331 5.6E-43 T 17-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 VI35_12120 43452559e06ce4d0d962ca3d6036b66b 338 Gene3D G3DSA:3.40.640.10 1 246 4.4E-100 T 17-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VI35_12120 43452559e06ce4d0d962ca3d6036b66b 338 Gene3D G3DSA:3.90.1150.10 247 338 4.7E-32 T 17-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VI35_12120 43452559e06ce4d0d962ca3d6036b66b 338 SUPERFAMILY SSF53383 3 337 1.1E-116 T 17-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VI35_12120 43452559e06ce4d0d962ca3d6036b66b 338 Pfam PF01212 Beta-eliminating lyase 5 286 2.8E-95 T 17-10-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 VI35_12120 43452559e06ce4d0d962ca3d6036b66b 338 PIRSF PIRSF017617 1 338 2.0E-136 T 17-10-2018 IPR023603 Threonine aldolase VI35_19185 031dd8f8dff1e4c46066db4d2e2d8bba 296 SUPERFAMILY SSF55073 146 291 3.14E-43 T 17-10-2018 IPR029787 Nucleotide cyclase VI35_19185 031dd8f8dff1e4c46066db4d2e2d8bba 296 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 139 291 1.6E-41 T 17-10-2018 IPR000160 GGDEF domain VI35_19185 031dd8f8dff1e4c46066db4d2e2d8bba 296 Pfam PF00990 Diguanylate cyclase, GGDEF domain 143 289 7.0E-39 T 17-10-2018 IPR000160 GGDEF domain VI35_19185 031dd8f8dff1e4c46066db4d2e2d8bba 296 SUPERFAMILY SSF55785 5 83 4.89E-8 T 17-10-2018 IPR035965 PAS domain superfamily VI35_19185 031dd8f8dff1e4c46066db4d2e2d8bba 296 Gene3D G3DSA:3.30.450.20 4 128 3.5E-8 T 17-10-2018 VI35_19185 031dd8f8dff1e4c46066db4d2e2d8bba 296 Gene3D G3DSA:3.30.70.270 129 293 1.7E-48 T 17-10-2018 VI35_19185 031dd8f8dff1e4c46066db4d2e2d8bba 296 SMART SM00267 130 293 2.4E-50 T 17-10-2018 IPR000160 GGDEF domain VI35_19185 031dd8f8dff1e4c46066db4d2e2d8bba 296 Pfam PF08448 PAS fold 14 131 1.0E-7 T 17-10-2018 IPR013656 PAS fold-4 VI35_09155 b825b75cc375f2198155933603dd4338 348 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 19 199 1.2E-28 T 17-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal VI35_09155 b825b75cc375f2198155933603dd4338 348 SMART SM00342 244 326 1.7E-22 T 17-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VI35_09155 b825b75cc375f2198155933603dd4338 348 Gene3D G3DSA:1.10.10.60 223 336 1.1E-21 T 17-10-2018 VI35_09155 b825b75cc375f2198155933603dd4338 348 SUPERFAMILY SSF46689 280 326 1.12E-7 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_09155 b825b75cc375f2198155933603dd4338 348 Pfam PF12833 Helix-turn-helix domain 250 326 2.8E-16 T 17-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VI35_14100 9e3ab0b37390bc89f531166237d5fce5 255 SUPERFAMILY SSF52540 1 210 1.3E-64 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_14100 9e3ab0b37390bc89f531166237d5fce5 255 SMART SM00382 26 207 1.0E-16 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_14100 9e3ab0b37390bc89f531166237d5fce5 255 Pfam PF00005 ABC transporter 17 156 3.8E-32 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_14100 9e3ab0b37390bc89f531166237d5fce5 255 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_14100 9e3ab0b37390bc89f531166237d5fce5 255 Gene3D G3DSA:3.40.50.300 1 229 2.6E-62 T 17-10-2018 VI35_20310 7cdc42535378c5ebeabe8c3d172c7919 520 Pfam PF00005 ABC transporter 278 439 5.3E-16 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_20310 7cdc42535378c5ebeabe8c3d172c7919 520 SUPERFAMILY SSF52540 252 492 5.33E-40 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_20310 7cdc42535378c5ebeabe8c3d172c7919 520 SMART SM00382 286 488 0.22 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_20310 7cdc42535378c5ebeabe8c3d172c7919 520 SMART SM00382 33 221 2.3E-13 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_20310 7cdc42535378c5ebeabe8c3d172c7919 520 ProSitePatterns PS00211 ABC transporters family signature. 412 426 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_20310 7cdc42535378c5ebeabe8c3d172c7919 520 Gene3D G3DSA:3.40.50.300 258 501 5.6E-38 T 17-10-2018 VI35_20310 7cdc42535378c5ebeabe8c3d172c7919 520 Pfam PF00005 ABC transporter 25 172 1.7E-27 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_20310 7cdc42535378c5ebeabe8c3d172c7919 520 SUPERFAMILY SSF52540 7 230 1.27E-56 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_20310 7cdc42535378c5ebeabe8c3d172c7919 520 Gene3D G3DSA:3.40.50.300 1 248 4.2E-57 T 17-10-2018 VI35_16680 b30bb6a23a8271e71978cbdd6e3b3189 332 PIRSF PIRSF028696 1 332 6.0E-80 T 17-10-2018 IPR016896 Protein of unknown function DUF2860 VI35_16680 b30bb6a23a8271e71978cbdd6e3b3189 332 Pfam PF11059 Protein of unknown function (DUF2860) 29 331 1.0E-71 T 17-10-2018 IPR016896 Protein of unknown function DUF2860 VI35_04880 a79430103d347ddf3b205dbea4951f58 152 SUPERFAMILY SSF74942 84 151 1.28E-17 T 17-10-2018 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily VI35_04880 a79430103d347ddf3b205dbea4951f58 152 Pfam PF17384 RimP C-terminal SH3 domain 86 151 5.7E-19 T 17-10-2018 IPR028998 Ribosome maturation factor RimP, C-terminal VI35_04880 a79430103d347ddf3b205dbea4951f58 152 Pfam PF02576 RimP N-terminal domain 12 83 2.8E-29 T 17-10-2018 IPR028989 Ribosome maturation factor RimP, N-terminal VI35_04880 a79430103d347ddf3b205dbea4951f58 152 SUPERFAMILY SSF75420 3 83 1.44E-26 T 17-10-2018 IPR035956 RimP, N-terminal domain superfamily VI35_04880 a79430103d347ddf3b205dbea4951f58 152 Gene3D G3DSA:3.30.300.70 1 80 2.1E-27 T 17-10-2018 IPR035956 RimP, N-terminal domain superfamily VI35_04880 a79430103d347ddf3b205dbea4951f58 152 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 6 151 25.41 T 17-10-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 VI35_01275 45401dd8a251e7fc13b8c01a8714bc2e 394 Gene3D G3DSA:2.40.30.10 338 393 5.2E-29 T 17-10-2018 VI35_01275 45401dd8a251e7fc13b8c01a8714bc2e 394 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 9.2E-15 T 17-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VI35_01275 45401dd8a251e7fc13b8c01a8714bc2e 394 Pfam PF03144 Elongation factor Tu domain 2 225 293 5.7E-17 T 17-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 VI35_01275 45401dd8a251e7fc13b8c01a8714bc2e 394 Gene3D G3DSA:2.40.30.10 206 334 5.3E-54 T 17-10-2018 VI35_01275 45401dd8a251e7fc13b8c01a8714bc2e 394 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 394 60.984 T 17-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 VI35_01275 45401dd8a251e7fc13b8c01a8714bc2e 394 Pfam PF00009 Elongation factor Tu GTP binding domain 10 201 6.0E-58 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_01275 45401dd8a251e7fc13b8c01a8714bc2e 394 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 17-10-2018 IPR031157 Tr-type G domain, conserved site VI35_01275 45401dd8a251e7fc13b8c01a8714bc2e 394 PRINTS PR00315 GTP-binding elongation factor signature 58 66 4.5E-25 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_01275 45401dd8a251e7fc13b8c01a8714bc2e 394 PRINTS PR00315 GTP-binding elongation factor signature 14 27 4.5E-25 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_01275 45401dd8a251e7fc13b8c01a8714bc2e 394 PRINTS PR00315 GTP-binding elongation factor signature 94 105 4.5E-25 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_01275 45401dd8a251e7fc13b8c01a8714bc2e 394 PRINTS PR00315 GTP-binding elongation factor signature 131 140 4.5E-25 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_01275 45401dd8a251e7fc13b8c01a8714bc2e 394 PRINTS PR00315 GTP-binding elongation factor signature 78 88 4.5E-25 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_01275 45401dd8a251e7fc13b8c01a8714bc2e 394 SUPERFAMILY SSF50465 298 393 6.04E-36 T 17-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal VI35_01275 45401dd8a251e7fc13b8c01a8714bc2e 394 Pfam PF03143 Elongation factor Tu C-terminal domain 298 392 1.2E-33 T 17-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal VI35_01275 45401dd8a251e7fc13b8c01a8714bc2e 394 SUPERFAMILY SSF52540 6 219 1.47E-60 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_01275 45401dd8a251e7fc13b8c01a8714bc2e 394 SUPERFAMILY SSF50447 205 301 3.93E-30 T 17-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VI35_01275 45401dd8a251e7fc13b8c01a8714bc2e 394 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 393 4.3E-237 T 17-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 VI35_01275 45401dd8a251e7fc13b8c01a8714bc2e 394 Gene3D G3DSA:3.40.50.300 1 203 1.2E-70 T 17-10-2018 VI35_16915 d23b88b2f5ab0ba657ab9bfb3e5a4b61 1036 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 56 265 7.2E-17 T 17-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VI35_16915 d23b88b2f5ab0ba657ab9bfb3e5a4b61 1036 SUPERFAMILY SSF111369 51 265 3.4E-29 T 17-10-2018 VI35_16915 d23b88b2f5ab0ba657ab9bfb3e5a4b61 1036 Gene3D G3DSA:1.10.287.470 92 183 9.5E-87 T 17-10-2018 VI35_16915 d23b88b2f5ab0ba657ab9bfb3e5a4b61 1036 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 36 370 2.7E-51 T 17-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VI35_16915 d23b88b2f5ab0ba657ab9bfb3e5a4b61 1036 Gene3D G3DSA:2.40.50.100 58 220 9.5E-87 T 17-10-2018 VI35_16915 d23b88b2f5ab0ba657ab9bfb3e5a4b61 1036 SUPERFAMILY SSF52540 391 622 7.5E-68 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_16915 d23b88b2f5ab0ba657ab9bfb3e5a4b61 1036 Gene3D G3DSA:2.40.30.170 47 310 9.5E-87 T 17-10-2018 VI35_16915 d23b88b2f5ab0ba657ab9bfb3e5a4b61 1036 Pfam PF02687 FtsX-like permease family 941 1029 1.7E-11 T 17-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 VI35_16915 d23b88b2f5ab0ba657ab9bfb3e5a4b61 1036 Pfam PF00005 ABC transporter 411 559 1.2E-28 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_16915 d23b88b2f5ab0ba657ab9bfb3e5a4b61 1036 SMART SM00382 420 607 6.3E-17 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_16915 d23b88b2f5ab0ba657ab9bfb3e5a4b61 1036 Gene3D G3DSA:2.40.420.20 43 366 9.5E-87 T 17-10-2018 VI35_16915 d23b88b2f5ab0ba657ab9bfb3e5a4b61 1036 ProSitePatterns PS00211 ABC transporters family signature. 532 546 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_16915 d23b88b2f5ab0ba657ab9bfb3e5a4b61 1036 Gene3D G3DSA:3.40.50.300 388 658 1.2E-67 T 17-10-2018 VI35_16915 d23b88b2f5ab0ba657ab9bfb3e5a4b61 1036 Pfam PF12704 MacB-like periplasmic core domain 660 879 8.1E-38 T 17-10-2018 IPR025857 MacB-like periplasmic core domain VI35_00165 38fc38892be77fd5a28f7f84f8f7e59c 91 SUPERFAMILY SSF63562 1 78 3.53E-24 T 17-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 VI35_00165 38fc38892be77fd5a28f7f84f8f7e59c 91 Pfam PF01192 RNA polymerase Rpb6 10 59 1.9E-16 T 17-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 VI35_00165 38fc38892be77fd5a28f7f84f8f7e59c 91 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 62 16.65 T 17-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_00165 38fc38892be77fd5a28f7f84f8f7e59c 91 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 60 1.4E-27 T 17-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_00165 38fc38892be77fd5a28f7f84f8f7e59c 91 Gene3D G3DSA:3.90.940.10 1 91 1.2E-28 T 17-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 VI35_00165 38fc38892be77fd5a28f7f84f8f7e59c 91 SMART SM01409 8 61 1.4E-14 T 17-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 VI35_09265 d67b0c30aafb47fadac6d276c1a271b7 684 SUPERFAMILY SSF52317 400 614 7.32E-61 T 17-10-2018 IPR029062 Class I glutamine amidotransferase-like VI35_09265 d67b0c30aafb47fadac6d276c1a271b7 684 PIRSF PIRSF001084 6 683 2.1E-247 T 17-10-2018 IPR003476 Glycoside hydrolase, family 42 GO:0004565|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 VI35_09265 d67b0c30aafb47fadac6d276c1a271b7 684 SUPERFAMILY SSF51445 8 372 3.62E-116 T 17-10-2018 IPR017853 Glycoside hydrolase superfamily VI35_09265 d67b0c30aafb47fadac6d276c1a271b7 684 Gene3D G3DSA:2.60.40.1180 623 684 5.8E-21 T 17-10-2018 IPR013780 Glycosyl hydrolase, all-beta VI35_09265 d67b0c30aafb47fadac6d276c1a271b7 684 Gene3D G3DSA:3.20.20.80 3 399 6.4E-139 T 17-10-2018 VI35_09265 d67b0c30aafb47fadac6d276c1a271b7 684 Pfam PF02449 Beta-galactosidase 19 392 6.2E-154 T 17-10-2018 IPR013529 Glycoside hydrolase, family 42, N-terminal GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 VI35_09265 d67b0c30aafb47fadac6d276c1a271b7 684 Pfam PF08533 Beta-galactosidase C-terminal domain 625 682 6.1E-14 T 17-10-2018 IPR013739 Beta-galactosidase C-terminal GO:0004565|GO:0006012 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 VI35_09265 d67b0c30aafb47fadac6d276c1a271b7 684 Gene3D G3DSA:3.40.50.880 400 619 5.5E-67 T 17-10-2018 IPR029062 Class I glutamine amidotransferase-like VI35_09265 d67b0c30aafb47fadac6d276c1a271b7 684 Pfam PF08532 Beta-galactosidase trimerisation domain 403 615 5.7E-75 T 17-10-2018 IPR013738 Beta-galactosidase trimerisation GO:0004565|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 VI35_19015 ed20e594707d01839a61960fb35c1b08 315 PIRSF PIRSF000450 1 309 2.6E-144 T 17-10-2018 IPR033752 MetA family VI35_19015 ed20e594707d01839a61960fb35c1b08 315 SUPERFAMILY SSF52317 17 297 6.72E-102 T 17-10-2018 IPR029062 Class I glutamine amidotransferase-like VI35_19015 ed20e594707d01839a61960fb35c1b08 315 Hamap MF_00295 Homoserine O-succinyltransferase [metAS]. 31 299 40.695 T 17-10-2018 IPR033752 MetA family VI35_19015 ed20e594707d01839a61960fb35c1b08 315 ProDom PD037892 HOMOSERINE O-SUCCINYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIOSYNTHESIS TRANSSUCCINYLASE HTS METHIONINE O- AMINO-ACID 36 289 8.0E-103 T 17-10-2018 VI35_19015 ed20e594707d01839a61960fb35c1b08 315 Gene3D G3DSA:3.40.50.880 1 301 2.6E-121 T 17-10-2018 IPR029062 Class I glutamine amidotransferase-like VI35_19015 ed20e594707d01839a61960fb35c1b08 315 TIGRFAM TIGR01001 metA: homoserine O-succinyltransferase 1 301 8.7E-150 T 17-10-2018 IPR005697 Homoserine O-succinyltransferase MetA GO:0005737|GO:0008899|GO:0019281 VI35_19015 ed20e594707d01839a61960fb35c1b08 315 Pfam PF04204 Homoserine O-succinyltransferase 2 299 9.9E-134 T 17-10-2018 IPR033752 MetA family VI35_08810 15c424140f0b2dcd5afa278a76073945 293 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 60 142 2.1E-10 T 17-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain VI35_08810 15c424140f0b2dcd5afa278a76073945 293 SUPERFAMILY SSF53927 152 291 3.76E-36 T 17-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 VI35_08810 15c424140f0b2dcd5afa278a76073945 293 Pfam PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region 155 276 4.1E-42 T 17-10-2018 IPR013171 Cytidine/deoxycytidylate deaminase, zinc-binding domain GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 VI35_08810 15c424140f0b2dcd5afa278a76073945 293 SUPERFAMILY SSF53927 3 145 5.69E-37 T 17-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 VI35_08810 15c424140f0b2dcd5afa278a76073945 293 PIRSF PIRSF006334 14 293 4.7E-97 T 17-10-2018 VI35_08810 15c424140f0b2dcd5afa278a76073945 293 Gene3D G3DSA:3.40.140.10 179 290 2.3E-25 T 17-10-2018 VI35_08810 15c424140f0b2dcd5afa278a76073945 293 Hamap MF_01558 Cytidine deaminase [cdd]. 1 292 44.749 T 17-10-2018 IPR020797 Cytidine deaminase, bacteria GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 VI35_08810 15c424140f0b2dcd5afa278a76073945 293 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 101 135 - T 17-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 VI35_08810 15c424140f0b2dcd5afa278a76073945 293 Gene3D G3DSA:3.40.140.10 28 177 1.2E-37 T 17-10-2018 VI35_19145 db994906efe4874e1973d5a49d617eb1 680 Pfam PF07715 TonB-dependent Receptor Plug Domain 53 146 7.9E-21 T 17-10-2018 IPR012910 TonB-dependent receptor, plug domain VI35_19145 db994906efe4874e1973d5a49d617eb1 680 SUPERFAMILY SSF56935 40 680 9.77E-125 T 17-10-2018 VI35_19145 db994906efe4874e1973d5a49d617eb1 680 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 54 680 5.0E-104 T 17-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 VI35_19145 db994906efe4874e1973d5a49d617eb1 680 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 663 680 - T 17-10-2018 IPR010917 TonB-dependent receptor, conserved site VI35_19145 db994906efe4874e1973d5a49d617eb1 680 Gene3D G3DSA:2.40.170.20 156 680 1.1E-110 T 17-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VI35_19145 db994906efe4874e1973d5a49d617eb1 680 Pfam PF00593 TonB dependent receptor 233 679 7.6E-55 T 17-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel VI35_19145 db994906efe4874e1973d5a49d617eb1 680 Gene3D G3DSA:2.170.130.10 34 155 2.8E-33 T 17-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily VI35_02175 786ee8cf07f226ce682c7928630b2a29 236 Gene3D G3DSA:1.10.1740.10 12 94 1.6E-22 T 17-10-2018 VI35_02175 786ee8cf07f226ce682c7928630b2a29 236 Pfam PF04545 Sigma-70, region 4 181 230 1.0E-11 T 17-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 VI35_02175 786ee8cf07f226ce682c7928630b2a29 236 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 25 232 9.5E-80 T 17-10-2018 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 VI35_02175 786ee8cf07f226ce682c7928630b2a29 236 Gene3D G3DSA:1.20.140.160 95 234 3.0E-35 T 17-10-2018 VI35_02175 786ee8cf07f226ce682c7928630b2a29 236 Pfam PF04542 Sigma-70 region 2 25 97 1.5E-14 T 17-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 VI35_02175 786ee8cf07f226ce682c7928630b2a29 236 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 24 232 1.3E-29 T 17-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 VI35_02175 786ee8cf07f226ce682c7928630b2a29 236 Pfam PF04539 Sigma-70 region 3 109 160 2.5E-9 T 17-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 VI35_02175 786ee8cf07f226ce682c7928630b2a29 236 SUPERFAMILY SSF88659 98 163 1.4E-13 T 17-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VI35_02175 786ee8cf07f226ce682c7928630b2a29 236 SUPERFAMILY SSF88946 23 96 6.93E-20 T 17-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 VI35_02175 786ee8cf07f226ce682c7928630b2a29 236 SUPERFAMILY SSF88659 154 234 4.3E-15 T 17-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VI35_02175 786ee8cf07f226ce682c7928630b2a29 236 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 202 228 - T 17-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VI35_12635 6e525278a250f037213f95f0abc2f961 308 Gene3D G3DSA:1.20.1510.10 15 219 1.3E-25 T 17-10-2018 IPR027469 Cation efflux transmembrane domain superfamily VI35_12635 6e525278a250f037213f95f0abc2f961 308 SUPERFAMILY SSF161111 14 219 6.54E-35 T 17-10-2018 IPR027469 Cation efflux transmembrane domain superfamily VI35_12635 6e525278a250f037213f95f0abc2f961 308 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 16 246 2.0E-26 T 17-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 VI35_12635 6e525278a250f037213f95f0abc2f961 308 Pfam PF01545 Cation efflux family 19 217 1.3E-33 T 17-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 VI35_14595 23bdc39fe2c872cf7bdcc51b1dda6938 424 TIGRFAM TIGR00260 thrC: threonine synthase 64 387 5.9E-110 T 17-10-2018 IPR004450 Threonine synthase-like VI35_14595 23bdc39fe2c872cf7bdcc51b1dda6938 424 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 95 109 - T 17-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 VI35_14595 23bdc39fe2c872cf7bdcc51b1dda6938 424 Gene3D G3DSA:3.40.50.1100 83 392 1.2E-135 T 17-10-2018 VI35_14595 23bdc39fe2c872cf7bdcc51b1dda6938 424 Pfam PF14821 Threonine synthase N terminus 7 78 3.0E-7 T 17-10-2018 IPR029144 Threonine synthase, N-terminal VI35_14595 23bdc39fe2c872cf7bdcc51b1dda6938 424 Gene3D G3DSA:3.40.50.1100 101 399 1.2E-135 T 17-10-2018 VI35_14595 23bdc39fe2c872cf7bdcc51b1dda6938 424 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 92 368 6.7E-22 T 17-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme VI35_14595 23bdc39fe2c872cf7bdcc51b1dda6938 424 SUPERFAMILY SSF53686 1 423 4.06E-129 T 17-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme VI35_14595 23bdc39fe2c872cf7bdcc51b1dda6938 424 Gene3D G3DSA:3.90.1380.10 1 79 1.2E-26 T 17-10-2018 IPR037158 Threonine synthase, N-terminal domain superfamily VI35_11455 8e32d82356f00b1f94e8226bacf06c7a 158 Pfam PF00255 Glutathione peroxidase 11 110 5.5E-39 T 17-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 VI35_11455 8e32d82356f00b1f94e8226bacf06c7a 158 Gene3D G3DSA:3.40.30.10 6 158 6.7E-65 T 17-10-2018 VI35_11455 8e32d82356f00b1f94e8226bacf06c7a 158 ProSitePatterns PS00460 Glutathione peroxidases active site. 23 38 - T 17-10-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 VI35_11455 8e32d82356f00b1f94e8226bacf06c7a 158 PRINTS PR01011 Glutathione peroxidase family signature 21 38 1.1E-19 T 17-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 VI35_11455 8e32d82356f00b1f94e8226bacf06c7a 158 PRINTS PR01011 Glutathione peroxidase family signature 122 131 1.1E-19 T 17-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 VI35_11455 8e32d82356f00b1f94e8226bacf06c7a 158 PRINTS PR01011 Glutathione peroxidase family signature 56 72 1.1E-19 T 17-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 VI35_11455 8e32d82356f00b1f94e8226bacf06c7a 158 SUPERFAMILY SSF52833 2 158 1.75E-61 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_11455 8e32d82356f00b1f94e8226bacf06c7a 158 PIRSF PIRSF000303 5 158 2.3E-61 T 17-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 VI35_13990 c589e2f0080bed8fb15b103d414d8989 288 SUPERFAMILY SSF54637 5 114 6.13E-40 T 17-10-2018 IPR029069 HotDog domain superfamily VI35_13990 c589e2f0080bed8fb15b103d414d8989 288 TIGRFAM TIGR00189 tesB: acyl-CoA thioesterase II 12 285 7.7E-96 T 17-10-2018 IPR003703 Acyl-CoA thioesterase GO:0006637|GO:0047617 Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-9033241 VI35_13990 c589e2f0080bed8fb15b103d414d8989 288 Gene3D G3DSA:3.10.129.10 132 287 1.8E-58 T 17-10-2018 VI35_13990 c589e2f0080bed8fb15b103d414d8989 288 Gene3D G3DSA:3.10.129.10 2 116 8.2E-46 T 17-10-2018 VI35_13990 c589e2f0080bed8fb15b103d414d8989 288 SUPERFAMILY SSF54637 116 286 7.22E-57 T 17-10-2018 IPR029069 HotDog domain superfamily VI35_13990 c589e2f0080bed8fb15b103d414d8989 288 Pfam PF13622 Thioesterase-like superfamily 34 284 1.8E-55 T 17-10-2018 VI35_11995 87cbfe575760a0e91a60680f9411cb0a 132 SUPERFAMILY SSF81273 2 58 3.73E-16 T 17-10-2018 VI35_11995 87cbfe575760a0e91a60680f9411cb0a 132 SUPERFAMILY SSF81273 90 132 2.79E-9 T 17-10-2018 VI35_11995 87cbfe575760a0e91a60680f9411cb0a 132 PIRSF PIRSF002096 1 132 5.9E-54 T 17-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 VI35_11995 87cbfe575760a0e91a60680f9411cb0a 132 SMART SM00528 86 132 3.3E-18 T 17-10-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 VI35_11995 87cbfe575760a0e91a60680f9411cb0a 132 Gene3D G3DSA:4.10.430.10 90 132 1.6E-19 T 17-10-2018 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily GO:0003677 VI35_11995 87cbfe575760a0e91a60680f9411cb0a 132 Gene3D G3DSA:1.10.287.1050 1 82 7.9E-32 T 17-10-2018 IPR027454 Histone-like protein H-NS, N-terminal GO:0046983 VI35_11995 87cbfe575760a0e91a60680f9411cb0a 132 Pfam PF00816 H-NS histone family 33 126 1.2E-18 T 17-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 VI35_09415 470014cbc94c1511390555424b60cc91 664 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 117 242 5.8E-45 T 17-10-2018 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 MetaCyc: PWY-7892 VI35_09415 470014cbc94c1511390555424b60cc91 664 Gene3D G3DSA:3.40.50.150 9 250 1.8E-104 T 17-10-2018 VI35_09415 470014cbc94c1511390555424b60cc91 664 Gene3D G3DSA:3.50.50.60 264 656 7.0E-136 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_09415 470014cbc94c1511390555424b60cc91 664 TIGRFAM TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 265 659 4.3E-148 T 17-10-2018 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 VI35_09415 470014cbc94c1511390555424b60cc91 664 SUPERFAMILY SSF51905 265 659 1.23E-34 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_09415 470014cbc94c1511390555424b60cc91 664 Gene3D G3DSA:3.30.9.10 348 569 7.0E-136 T 17-10-2018 VI35_09415 470014cbc94c1511390555424b60cc91 664 Hamap MF_01102 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC [mnmC]. 7 654 28.707 T 17-10-2018 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC GO:0004808|GO:0008033|GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 VI35_09415 470014cbc94c1511390555424b60cc91 664 SUPERFAMILY SSF54373 477 566 1.03E-6 T 17-10-2018 VI35_09415 470014cbc94c1511390555424b60cc91 664 Pfam PF01266 FAD dependent oxidoreductase 265 629 1.3E-49 T 17-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 VI35_16925 711840dfbe927a7bc33d2f96acc26582 302 Gene3D G3DSA:3.40.50.10790 23 186 7.8E-52 T 17-10-2018 IPR023228 S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal VI35_16925 711840dfbe927a7bc33d2f96acc26582 302 Gene3D G3DSA:2.40.30.90 187 302 1.0E-33 T 17-10-2018 IPR023227 S-adenosyl-l-methionine hydroxide adenosyltransferase, C-terminal VI35_16925 711840dfbe927a7bc33d2f96acc26582 302 SUPERFAMILY SSF102522 26 181 4.18E-55 T 17-10-2018 IPR023228 S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal VI35_16925 711840dfbe927a7bc33d2f96acc26582 302 PIRSF PIRSF006779 22 299 5.5E-96 T 17-10-2018 IPR002747 SAM-dependent chlorinase/fluorinase VI35_16925 711840dfbe927a7bc33d2f96acc26582 302 Pfam PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase 28 293 4.3E-73 T 17-10-2018 IPR002747 SAM-dependent chlorinase/fluorinase VI35_16925 711840dfbe927a7bc33d2f96acc26582 302 SUPERFAMILY SSF101852 194 297 2.22E-24 T 17-10-2018 IPR023227 S-adenosyl-l-methionine hydroxide adenosyltransferase, C-terminal VI35_05555 d7cc2d3f963c055aa6d230bb990d0c5e 315 Gene3D G3DSA:3.40.50.2020 7 302 6.9E-136 T 17-10-2018 VI35_05555 d7cc2d3f963c055aa6d230bb990d0c5e 315 Pfam PF14572 Phosphoribosyl synthetase-associated domain 204 313 5.0E-30 T 17-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 VI35_05555 d7cc2d3f963c055aa6d230bb990d0c5e 315 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 4 121 6.7E-50 T 17-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 VI35_05555 d7cc2d3f963c055aa6d230bb990d0c5e 315 SUPERFAMILY SSF53271 69 306 7.67E-67 T 17-10-2018 IPR029057 Phosphoribosyltransferase-like VI35_05555 d7cc2d3f963c055aa6d230bb990d0c5e 315 SMART SM01400 4 121 1.2E-77 T 17-10-2018 VI35_05555 d7cc2d3f963c055aa6d230bb990d0c5e 315 Hamap MF_00583_B Putative ribose-phosphate pyrophosphokinase [prs]. 4 314 49.973 T 17-10-2018 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type GO:0004749 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 VI35_05555 d7cc2d3f963c055aa6d230bb990d0c5e 315 Gene3D G3DSA:3.40.50.2020 148 290 6.9E-136 T 17-10-2018 VI35_05555 d7cc2d3f963c055aa6d230bb990d0c5e 315 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 4 314 1.4E-126 T 17-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 VI35_05555 d7cc2d3f963c055aa6d230bb990d0c5e 315 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 129 144 - T 17-10-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 VI35_04785 8c57bad1b1f1b2239802b15740f8ba5b 518 SUPERFAMILY SSF53850 26 514 3.94E-122 T 17-10-2018 VI35_04785 8c57bad1b1f1b2239802b15740f8ba5b 518 Gene3D G3DSA:3.90.76.10 33 189 4.0E-119 T 17-10-2018 VI35_04785 8c57bad1b1f1b2239802b15740f8ba5b 518 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 72 93 - T 17-10-2018 IPR023765 Solute-binding protein family 5, conserved site VI35_04785 8c57bad1b1f1b2239802b15740f8ba5b 518 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 67 429 2.7E-82 T 17-10-2018 IPR000914 Solute-binding protein family 5 domain VI35_04785 8c57bad1b1f1b2239802b15740f8ba5b 518 Gene3D G3DSA:3.10.105.10 266 490 4.0E-119 T 17-10-2018 VI35_04785 8c57bad1b1f1b2239802b15740f8ba5b 518 Gene3D G3DSA:3.40.190.10 190 497 4.0E-119 T 17-10-2018 VI35_04785 8c57bad1b1f1b2239802b15740f8ba5b 518 PIRSF PIRSF002741 23 510 1.4E-90 T 17-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 VI35_13390 bd980ba1d2e128eba1acb1244f268e0a 700 Gene3D G3DSA:3.40.50.300 506 695 1.7E-31 T 17-10-2018 VI35_13390 bd980ba1d2e128eba1acb1244f268e0a 700 Hamap MF_02205 ATP-dependent DNA helicase DinG [dinG]. 33 690 35.8 T 17-10-2018 IPR039000 ATP-dependent DNA helicase DinG GO:0004003 VI35_13390 bd980ba1d2e128eba1acb1244f268e0a 700 Pfam PF13307 Helicase C-terminal domain 530 684 6.9E-32 T 17-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 VI35_13390 bd980ba1d2e128eba1acb1244f268e0a 700 SUPERFAMILY SSF52540 19 665 2.08E-14 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_13390 bd980ba1d2e128eba1acb1244f268e0a 700 Pfam PF06733 DEAD_2 195 265 5.2E-5 T 17-10-2018 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 VI35_13390 bd980ba1d2e128eba1acb1244f268e0a 700 Gene3D G3DSA:3.40.50.300 25 317 1.4E-39 T 17-10-2018 VI35_13390 bd980ba1d2e128eba1acb1244f268e0a 700 SMART SM00491 539 671 4.3E-30 T 17-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 VI35_04055 9675512e3293f3abe15eddd51123136f 636 Pfam PF00005 ABC transporter 328 459 2.1E-22 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_04055 9675512e3293f3abe15eddd51123136f 636 Pfam PF00005 ABC transporter 17 178 1.2E-20 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_04055 9675512e3293f3abe15eddd51123136f 636 SMART SM00382 26 223 1.3E-10 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_04055 9675512e3293f3abe15eddd51123136f 636 SMART SM00382 337 506 2.7E-11 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_04055 9675512e3293f3abe15eddd51123136f 636 Pfam PF12848 ABC transporter 217 299 1.5E-27 T 17-10-2018 IPR032781 ABC-transporter extension domain VI35_04055 9675512e3293f3abe15eddd51123136f 636 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_04055 9675512e3293f3abe15eddd51123136f 636 Gene3D G3DSA:3.40.50.300 6 273 1.1E-61 T 17-10-2018 VI35_04055 9675512e3293f3abe15eddd51123136f 636 Gene3D G3DSA:3.40.50.300 275 536 1.1E-54 T 17-10-2018 VI35_04055 9675512e3293f3abe15eddd51123136f 636 SUPERFAMILY SSF52540 295 511 1.1E-43 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_04055 9675512e3293f3abe15eddd51123136f 636 ProSitePatterns PS00211 ABC transporters family signature. 431 445 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_04055 9675512e3293f3abe15eddd51123136f 636 SUPERFAMILY SSF52540 4 258 2.58E-45 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_04055 9675512e3293f3abe15eddd51123136f 636 Pfam PF16326 ABC transporter C-terminal domain 560 625 1.2E-9 T 17-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 VI35_12265 c942f2219ac99a949489fd92f61abe1f 76 ProDom PD060428 YFGJ CYTOPLASMIC VP0614 ECS3372 VC0765 YPO2873 Y1359 STY2763A VV0773 4 69 7.0E-12 T 17-10-2018 IPR010807 Protein of unknown function DUF1407 VI35_12265 c942f2219ac99a949489fd92f61abe1f 76 Gene3D G3DSA:2.10.290.10 2 71 4.9E-27 T 17-10-2018 IPR029037 YfgJ-like VI35_12265 c942f2219ac99a949489fd92f61abe1f 76 SUPERFAMILY SSF161187 4 70 3.4E-25 T 17-10-2018 VI35_12265 c942f2219ac99a949489fd92f61abe1f 76 Pfam PF07191 zinc-ribbons 5 69 6.0E-25 T 17-10-2018 IPR010807 Protein of unknown function DUF1407 VI35_20950 887f123831205349a7373a9cdc9b928d 249 Pfam PF04445 Putative SAM-dependent methyltransferase 28 243 2.9E-105 T 17-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 VI35_20950 887f123831205349a7373a9cdc9b928d 249 Gene3D G3DSA:3.40.1630.10 1 53 2.7E-10 T 17-10-2018 VI35_20950 887f123831205349a7373a9cdc9b928d 249 Hamap MF_01523 Ribosomal RNA small subunit methyltransferase J [rsmJ]. 1 245 39.262 T 17-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 VI35_20950 887f123831205349a7373a9cdc9b928d 249 Gene3D G3DSA:3.40.50.150 54 248 2.8E-77 T 17-10-2018 VI35_20950 887f123831205349a7373a9cdc9b928d 249 SUPERFAMILY SSF53335 27 244 1.4E-74 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_17020 d862d1d5c1d317d3b018ad750860925d 111 Pfam PF04480 Protein of unknown function (DUF559) 2 110 4.8E-39 T 17-10-2018 IPR007569 Protein of unknown function DUF559 VI35_17020 d862d1d5c1d317d3b018ad750860925d 111 SUPERFAMILY SSF52980 5 104 3.54E-19 T 17-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 VI35_17020 d862d1d5c1d317d3b018ad750860925d 111 Gene3D G3DSA:3.40.960.10 12 111 3.8E-30 T 17-10-2018 VI35_11090 5a6a0c0f7b4e52804ac18335abe4206c 1307 SUPERFAMILY SSF47226 1182 1283 3.01E-10 T 17-10-2018 IPR036641 HPT domain superfamily GO:0000160 VI35_11090 5a6a0c0f7b4e52804ac18335abe4206c 1307 SUPERFAMILY SSF47384 757 836 1.26E-17 T 17-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VI35_11090 5a6a0c0f7b4e52804ac18335abe4206c 1307 SMART SM00062 261 477 2.9E-15 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_11090 5a6a0c0f7b4e52804ac18335abe4206c 1307 SUPERFAMILY SSF52172 1084 1203 1.2E-32 T 17-10-2018 IPR011006 CheY-like superfamily VI35_11090 5a6a0c0f7b4e52804ac18335abe4206c 1307 SMART SM00388 771 836 1.0E-19 T 17-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VI35_11090 5a6a0c0f7b4e52804ac18335abe4206c 1307 Pfam PF01627 Hpt domain 1227 1287 1.1E-7 T 17-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VI35_11090 5a6a0c0f7b4e52804ac18335abe4206c 1307 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 262 473 1.2E-22 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_11090 5a6a0c0f7b4e52804ac18335abe4206c 1307 SUPERFAMILY SSF53850 262 474 5.79E-30 T 17-10-2018 VI35_11090 5a6a0c0f7b4e52804ac18335abe4206c 1307 SMART SM00387 883 994 1.9E-34 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_11090 5a6a0c0f7b4e52804ac18335abe4206c 1307 PRINTS PR00344 Bacterial sensor protein C-terminal signature 978 991 3.2E-11 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_11090 5a6a0c0f7b4e52804ac18335abe4206c 1307 PRINTS PR00344 Bacterial sensor protein C-terminal signature 919 933 3.2E-11 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_11090 5a6a0c0f7b4e52804ac18335abe4206c 1307 PRINTS PR00344 Bacterial sensor protein C-terminal signature 937 947 3.2E-11 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_11090 5a6a0c0f7b4e52804ac18335abe4206c 1307 PRINTS PR00344 Bacterial sensor protein C-terminal signature 954 972 3.2E-11 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_11090 5a6a0c0f7b4e52804ac18335abe4206c 1307 Gene3D G3DSA:3.40.190.10 346 436 1.7E-40 T 17-10-2018 VI35_11090 5a6a0c0f7b4e52804ac18335abe4206c 1307 Gene3D G3DSA:3.40.190.10 111 198 3.3E-14 T 17-10-2018 VI35_11090 5a6a0c0f7b4e52804ac18335abe4206c 1307 Gene3D G3DSA:1.10.287.130 748 834 4.0E-22 T 17-10-2018 VI35_11090 5a6a0c0f7b4e52804ac18335abe4206c 1307 SUPERFAMILY SSF55785 618 749 8.38E-13 T 17-10-2018 IPR035965 PAS domain superfamily VI35_11090 5a6a0c0f7b4e52804ac18335abe4206c 1307 Gene3D G3DSA:3.40.50.12740 1084 1227 5.2E-34 T 17-10-2018 VI35_11090 5a6a0c0f7b4e52804ac18335abe4206c 1307 Gene3D G3DSA:1.20.120.160 1228 1304 2.0E-8 T 17-10-2018 IPR036641 HPT domain superfamily GO:0000160 VI35_11090 5a6a0c0f7b4e52804ac18335abe4206c 1307 Gene3D G3DSA:3.30.450.20 625 747 1.5E-15 T 17-10-2018 VI35_11090 5a6a0c0f7b4e52804ac18335abe4206c 1307 SUPERFAMILY SSF55874 825 995 1.44E-43 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_11090 5a6a0c0f7b4e52804ac18335abe4206c 1307 Pfam PF00072 Response regulator receiver domain 1087 1195 1.8E-23 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_11090 5a6a0c0f7b4e52804ac18335abe4206c 1307 SUPERFAMILY SSF53850 32 237 7.15E-15 T 17-10-2018 VI35_11090 5a6a0c0f7b4e52804ac18335abe4206c 1307 Gene3D G3DSA:3.30.565.10 837 999 8.3E-42 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_11090 5a6a0c0f7b4e52804ac18335abe4206c 1307 Gene3D G3DSA:3.40.190.10 49 224 3.3E-14 T 17-10-2018 VI35_11090 5a6a0c0f7b4e52804ac18335abe4206c 1307 SMART SM00448 1085 1198 7.5E-29 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_11090 5a6a0c0f7b4e52804ac18335abe4206c 1307 Pfam PF00512 His Kinase A (phospho-acceptor) domain 771 835 6.5E-16 T 17-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VI35_11090 5a6a0c0f7b4e52804ac18335abe4206c 1307 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 884 993 5.3E-22 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_11090 5a6a0c0f7b4e52804ac18335abe4206c 1307 Gene3D G3DSA:3.40.190.10 251 473 1.7E-40 T 17-10-2018 VI35_20000 4298382031a40a98568e55d68de29d18 598 Gene3D G3DSA:3.50.30.80 418 565 3.9E-48 T 17-10-2018 VI35_20000 4298382031a40a98568e55d68de29d18 598 Pfam PF00920 Dehydratase family 66 594 1.3E-146 T 17-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 VI35_20000 4298382031a40a98568e55d68de29d18 598 Hamap MF_02094 Phosphogluconate dehydratase [edd]. 2 598 55.402 T 17-10-2018 VI35_20000 4298382031a40a98568e55d68de29d18 598 SUPERFAMILY SSF52016 418 596 1.1E-51 T 17-10-2018 VI35_20000 4298382031a40a98568e55d68de29d18 598 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 504 515 - T 17-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 VI35_20000 4298382031a40a98568e55d68de29d18 598 TIGRFAM TIGR01196 edd: phosphogluconate dehydratase 3 597 1.0E-259 T 17-10-2018 IPR004786 6-phosphogluconate dehydratase GO:0004456|GO:0009255 KEGG: 00030+4.2.1.12 VI35_20000 4298382031a40a98568e55d68de29d18 598 SUPERFAMILY SSF143975 3 417 1.96E-132 T 17-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 VI35_20000 4298382031a40a98568e55d68de29d18 598 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 155 165 - T 17-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 VI35_19105 80e6bfbbde48743fd21b7e464da2decf 315 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 237 253 - T 17-10-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VI35_19105 80e6bfbbde48743fd21b7e464da2decf 315 PRINTS PR00151 Porphobilinogen deaminase signature 236 253 5.4E-50 T 17-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VI35_19105 80e6bfbbde48743fd21b7e464da2decf 315 PRINTS PR00151 Porphobilinogen deaminase signature 130 147 5.4E-50 T 17-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VI35_19105 80e6bfbbde48743fd21b7e464da2decf 315 PRINTS PR00151 Porphobilinogen deaminase signature 51 71 5.4E-50 T 17-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VI35_19105 80e6bfbbde48743fd21b7e464da2decf 315 PRINTS PR00151 Porphobilinogen deaminase signature 149 166 5.4E-50 T 17-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VI35_19105 80e6bfbbde48743fd21b7e464da2decf 315 PRINTS PR00151 Porphobilinogen deaminase signature 82 101 5.4E-50 T 17-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VI35_19105 80e6bfbbde48743fd21b7e464da2decf 315 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 232 301 1.7E-20 T 17-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VI35_19105 80e6bfbbde48743fd21b7e464da2decf 315 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 12 218 1.4E-80 T 17-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VI35_19105 80e6bfbbde48743fd21b7e464da2decf 315 Gene3D G3DSA:3.30.160.40 227 312 1.4E-28 T 17-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VI35_19105 80e6bfbbde48743fd21b7e464da2decf 315 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 11 303 39.933 T 17-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VI35_19105 80e6bfbbde48743fd21b7e464da2decf 315 Gene3D G3DSA:3.40.190.10 12 216 1.5E-85 T 17-10-2018 VI35_19105 80e6bfbbde48743fd21b7e464da2decf 315 Gene3D G3DSA:3.40.190.10 109 208 1.5E-85 T 17-10-2018 VI35_19105 80e6bfbbde48743fd21b7e464da2decf 315 SUPERFAMILY SSF54782 227 313 9.29E-27 T 17-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VI35_19105 80e6bfbbde48743fd21b7e464da2decf 315 SUPERFAMILY SSF53850 10 225 3.43E-87 T 17-10-2018 VI35_19105 80e6bfbbde48743fd21b7e464da2decf 315 PIRSF PIRSF001438 1 315 9.6E-123 T 17-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VI35_19105 80e6bfbbde48743fd21b7e464da2decf 315 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 12 303 1.9E-114 T 17-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VI35_01255 1fb740860e24f0646840e4724aff7826 321 Pfam PF03099 Biotin/lipoate A/B protein ligase family 84 208 1.1E-19 T 17-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 VI35_01255 1fb740860e24f0646840e4724aff7826 321 SUPERFAMILY SSF46785 1 61 5.25E-14 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_01255 1fb740860e24f0646840e4724aff7826 321 Gene3D G3DSA:1.10.10.10 3 64 2.7E-20 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_01255 1fb740860e24f0646840e4724aff7826 321 Hamap MF_00978 Bifunctional ligase/repressor BirA [birA]. 7 318 32.207 T 17-10-2018 IPR030855 Bifunctional ligase/repressor BirA GO:0004077|GO:0006355 KEGG: 00780+6.3.4.15 VI35_01255 1fb740860e24f0646840e4724aff7826 321 Pfam PF08279 HTH domain 8 59 7.6E-12 T 17-10-2018 IPR013196 Helix-turn-helix, type 11 VI35_01255 1fb740860e24f0646840e4724aff7826 321 Pfam PF02237 Biotin protein ligase C terminal domain 273 317 3.7E-10 T 17-10-2018 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 VI35_01255 1fb740860e24f0646840e4724aff7826 321 SUPERFAMILY SSF55681 79 269 8.45E-58 T 17-10-2018 VI35_01255 1fb740860e24f0646840e4724aff7826 321 Gene3D G3DSA:2.30.30.100 272 321 5.7E-18 T 17-10-2018 VI35_01255 1fb740860e24f0646840e4724aff7826 321 SUPERFAMILY SSF50037 272 318 6.41E-11 T 17-10-2018 IPR008988 Transcriptional repressor, C-terminal VI35_01255 1fb740860e24f0646840e4724aff7826 321 Gene3D G3DSA:3.30.930.10 66 271 6.0E-69 T 17-10-2018 VI35_01255 1fb740860e24f0646840e4724aff7826 321 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 81 318 9.9E-65 T 17-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 VI35_08550 7eb10deb2b874ccb08cd478236d64c12 336 Gene3D G3DSA:1.10.3720.10 99 328 1.9E-17 T 17-10-2018 IPR035906 MetI-like superfamily VI35_08550 7eb10deb2b874ccb08cd478236d64c12 336 SUPERFAMILY SSF161098 104 314 1.44E-17 T 17-10-2018 IPR035906 MetI-like superfamily VI35_08550 7eb10deb2b874ccb08cd478236d64c12 336 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 127 329 2.0E-39 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_13350 80f85e6f6f1037332f7c5f658d59d939 589 SUPERFAMILY SSF52540 332 579 2.02E-94 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_13350 80f85e6f6f1037332f7c5f658d59d939 589 Pfam PF00005 ABC transporter 359 509 2.9E-35 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_13350 80f85e6f6f1037332f7c5f658d59d939 589 Pfam PF00664 ABC transporter transmembrane region 38 297 5.7E-52 T 17-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 VI35_13350 80f85e6f6f1037332f7c5f658d59d939 589 Gene3D G3DSA:1.20.1560.10 1 328 2.2E-80 T 17-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VI35_13350 80f85e6f6f1037332f7c5f658d59d939 589 SMART SM00382 368 555 1.2E-17 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_13350 80f85e6f6f1037332f7c5f658d59d939 589 Gene3D G3DSA:3.40.50.300 329 581 1.1E-96 T 17-10-2018 VI35_13350 80f85e6f6f1037332f7c5f658d59d939 589 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 13 581 9.3E-242 T 17-10-2018 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 VI35_13350 80f85e6f6f1037332f7c5f658d59d939 589 ProSitePatterns PS00211 ABC transporters family signature. 481 495 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_13350 80f85e6f6f1037332f7c5f658d59d939 589 SUPERFAMILY SSF90123 14 327 1.44E-72 T 17-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VI35_20065 2e0f5e86c6cb7cc15d17a9760c70e539 351 Pfam PF00989 PAS fold 10 105 3.9E-14 T 17-10-2018 IPR013767 PAS fold GO:0006355 VI35_20065 2e0f5e86c6cb7cc15d17a9760c70e539 351 SMART SM00091 6 74 2.8E-4 T 17-10-2018 IPR000014 PAS domain VI35_20065 2e0f5e86c6cb7cc15d17a9760c70e539 351 SMART SM00388 131 196 5.8E-15 T 17-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VI35_20065 2e0f5e86c6cb7cc15d17a9760c70e539 351 Gene3D G3DSA:3.30.450.20 5 114 4.7E-26 T 17-10-2018 VI35_20065 2e0f5e86c6cb7cc15d17a9760c70e539 351 Gene3D G3DSA:3.30.565.10 194 351 2.2E-42 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_20065 2e0f5e86c6cb7cc15d17a9760c70e539 351 SUPERFAMILY SSF47384 125 195 8.83E-14 T 17-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VI35_20065 2e0f5e86c6cb7cc15d17a9760c70e539 351 Pfam PF00512 His Kinase A (phospho-acceptor) domain 133 192 2.2E-14 T 17-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VI35_20065 2e0f5e86c6cb7cc15d17a9760c70e539 351 Gene3D G3DSA:1.10.287.130 116 193 1.3E-15 T 17-10-2018 VI35_20065 2e0f5e86c6cb7cc15d17a9760c70e539 351 PRINTS PR00344 Bacterial sensor protein C-terminal signature 283 297 5.5E-10 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_20065 2e0f5e86c6cb7cc15d17a9760c70e539 351 PRINTS PR00344 Bacterial sensor protein C-terminal signature 312 330 5.5E-10 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_20065 2e0f5e86c6cb7cc15d17a9760c70e539 351 PRINTS PR00344 Bacterial sensor protein C-terminal signature 335 348 5.5E-10 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_20065 2e0f5e86c6cb7cc15d17a9760c70e539 351 SUPERFAMILY SSF55874 198 348 6.94E-36 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_20065 2e0f5e86c6cb7cc15d17a9760c70e539 351 SUPERFAMILY SSF55785 18 125 3.84E-12 T 17-10-2018 IPR035965 PAS domain superfamily VI35_20065 2e0f5e86c6cb7cc15d17a9760c70e539 351 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 237 350 6.9E-17 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_20065 2e0f5e86c6cb7cc15d17a9760c70e539 351 SMART SM00387 235 351 4.8E-29 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_20065 2e0f5e86c6cb7cc15d17a9760c70e539 351 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 10 123 6.7E-9 T 17-10-2018 IPR000014 PAS domain VI35_00375 40d48fdc2a993be08925213aab751a48 297 Pfam PF03466 LysR substrate binding domain 87 292 9.7E-41 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_00375 40d48fdc2a993be08925213aab751a48 297 Gene3D G3DSA:3.40.190.10 165 266 1.8E-33 T 17-10-2018 VI35_00375 40d48fdc2a993be08925213aab751a48 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 4.3E-17 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_00375 40d48fdc2a993be08925213aab751a48 297 SUPERFAMILY SSF53850 88 293 4.67E-38 T 17-10-2018 VI35_00375 40d48fdc2a993be08925213aab751a48 297 Gene3D G3DSA:1.10.10.10 1 84 1.1E-21 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_00375 40d48fdc2a993be08925213aab751a48 297 Gene3D G3DSA:3.40.190.10 90 288 1.8E-33 T 17-10-2018 VI35_00375 40d48fdc2a993be08925213aab751a48 297 SUPERFAMILY SSF46785 1 111 1.02E-20 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_19565 597a8f7c37566fda8814c209f7e5a30c 568 SMART SM00382 363 554 4.9E-11 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_19565 597a8f7c37566fda8814c209f7e5a30c 568 SUPERFAMILY SSF51161 86 219 1.05E-5 T 17-10-2018 IPR011004 Trimeric LpxA-like superfamily VI35_19565 597a8f7c37566fda8814c209f7e5a30c 568 SUPERFAMILY SSF47364 264 342 1.3E-21 T 17-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 VI35_19565 597a8f7c37566fda8814c209f7e5a30c 568 Pfam PF00448 SRP54-type protein, GTPase domain 365 564 4.3E-76 T 17-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VI35_19565 597a8f7c37566fda8814c209f7e5a30c 568 SMART SM00963 269 349 5.0E-23 T 17-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VI35_19565 597a8f7c37566fda8814c209f7e5a30c 568 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 292 565 64.079 T 17-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 VI35_19565 597a8f7c37566fda8814c209f7e5a30c 568 SMART SM00962 364 565 3.3E-122 T 17-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VI35_19565 597a8f7c37566fda8814c209f7e5a30c 568 Gene3D G3DSA:1.20.120.140 266 563 5.2E-115 T 17-10-2018 VI35_19565 597a8f7c37566fda8814c209f7e5a30c 568 Gene3D G3DSA:3.40.50.300 364 553 5.2E-115 T 17-10-2018 VI35_19565 597a8f7c37566fda8814c209f7e5a30c 568 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 292 564 3.6E-112 T 17-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 VI35_19565 597a8f7c37566fda8814c209f7e5a30c 568 Pfam PF02881 SRP54-type protein, helical bundle domain 282 343 1.6E-10 T 17-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VI35_19565 597a8f7c37566fda8814c209f7e5a30c 568 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 538 551 - T 17-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VI35_19565 597a8f7c37566fda8814c209f7e5a30c 568 SUPERFAMILY SSF52540 360 565 5.7E-52 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_17200 1da01e5387d136bbde0e626beb27062d 380 TIGRFAM TIGR00937 2A51: chromate efflux transporter 8 366 2.5E-83 T 17-10-2018 IPR014047 Chromate transporter, long chain VI35_17200 1da01e5387d136bbde0e626beb27062d 380 PIRSF PIRSF004810 1 380 1.2E-105 T 17-10-2018 IPR014047 Chromate transporter, long chain VI35_17200 1da01e5387d136bbde0e626beb27062d 380 Pfam PF02417 Chromate transporter 3 166 6.6E-31 T 17-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 VI35_17200 1da01e5387d136bbde0e626beb27062d 380 Pfam PF02417 Chromate transporter 213 375 1.4E-32 T 17-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 VI35_11465 613566f493b8797631484b7202b9723d 145 Gene3D G3DSA:3.40.630.30 1 144 2.4E-39 T 17-10-2018 VI35_11465 613566f493b8797631484b7202b9723d 145 Pfam PF13673 Acetyltransferase (GNAT) domain 48 125 1.2E-17 T 17-10-2018 IPR000182 GNAT domain VI35_11465 613566f493b8797631484b7202b9723d 145 SUPERFAMILY SSF55729 1 139 1.56E-29 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_01005 96cc6128b7a06f2c56d67173c97cadf2 406 PIRSF PIRSF006356 1 406 1.9E-151 T 17-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 VI35_01005 96cc6128b7a06f2c56d67173c97cadf2 406 SUPERFAMILY SSF55909 3 406 7.66E-128 T 17-10-2018 VI35_01005 96cc6128b7a06f2c56d67173c97cadf2 406 Pfam PF02274 Amidinotransferase 18 403 5.5E-109 T 17-10-2018 VI35_01005 96cc6128b7a06f2c56d67173c97cadf2 406 Gene3D G3DSA:3.75.10.10 6 403 1.2E-151 T 17-10-2018 VI35_01005 96cc6128b7a06f2c56d67173c97cadf2 406 Gene3D G3DSA:1.10.3930.10 68 148 1.2E-151 T 17-10-2018 VI35_01005 96cc6128b7a06f2c56d67173c97cadf2 406 PRINTS PR01466 Bacterial arginine deiminase signature 2 22 3.9E-45 T 17-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 VI35_01005 96cc6128b7a06f2c56d67173c97cadf2 406 PRINTS PR01466 Bacterial arginine deiminase signature 177 192 3.9E-45 T 17-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 VI35_01005 96cc6128b7a06f2c56d67173c97cadf2 406 PRINTS PR01466 Bacterial arginine deiminase signature 362 376 3.9E-45 T 17-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 VI35_01005 96cc6128b7a06f2c56d67173c97cadf2 406 PRINTS PR01466 Bacterial arginine deiminase signature 149 167 3.9E-45 T 17-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 VI35_01005 96cc6128b7a06f2c56d67173c97cadf2 406 PRINTS PR01466 Bacterial arginine deiminase signature 342 359 3.9E-45 T 17-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 VI35_01005 96cc6128b7a06f2c56d67173c97cadf2 406 PRINTS PR01466 Bacterial arginine deiminase signature 385 403 3.9E-45 T 17-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 VI35_01005 96cc6128b7a06f2c56d67173c97cadf2 406 TIGRFAM TIGR01078 arcA: arginine deiminase 5 406 4.5E-162 T 17-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 VI35_01005 96cc6128b7a06f2c56d67173c97cadf2 406 Hamap MF_00242 Arginine deiminase [arcA]. 1 406 44.403 T 17-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 VI35_17780 4e6a8433be83bc4972d8a164fe8a4115 249 SUPERFAMILY SSF55315 3 75 7.77E-19 T 17-10-2018 IPR029064 50S ribosomal protein L30e-like VI35_17780 4e6a8433be83bc4972d8a164fe8a4115 249 SMART SM00967 5 81 9.3E-21 T 17-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 VI35_17780 4e6a8433be83bc4972d8a164fe8a4115 249 Gene3D G3DSA:3.40.1280.10 84 248 2.7E-63 T 17-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VI35_17780 4e6a8433be83bc4972d8a164fe8a4115 249 Hamap MF_01887 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [rlmB]. 3 248 44.364 T 17-10-2018 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB VI35_17780 4e6a8433be83bc4972d8a164fe8a4115 249 SUPERFAMILY SSF75217 92 248 4.51E-49 T 17-10-2018 IPR029028 Alpha/beta knot methyltransferases VI35_17780 4e6a8433be83bc4972d8a164fe8a4115 249 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 3 247 3.6E-85 T 17-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 VI35_17780 4e6a8433be83bc4972d8a164fe8a4115 249 Gene3D G3DSA:3.30.1330.30 1 76 8.7E-27 T 17-10-2018 IPR029064 50S ribosomal protein L30e-like VI35_17780 4e6a8433be83bc4972d8a164fe8a4115 249 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 5 77 1.9E-19 T 17-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 VI35_17780 4e6a8433be83bc4972d8a164fe8a4115 249 Pfam PF00588 SpoU rRNA Methylase family 101 241 7.6E-40 T 17-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 VI35_00540 558a6b68c17e002fceb09f4e0ae82454 482 SUPERFAMILY SSF54862 111 360 1.79E-32 T 17-10-2018 VI35_00540 558a6b68c17e002fceb09f4e0ae82454 482 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 47 460 8.1E-168 T 17-10-2018 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021|GO:0055114 VI35_00540 558a6b68c17e002fceb09f4e0ae82454 482 Gene3D G3DSA:2.60.40.10 362 482 2.2E-34 T 17-10-2018 IPR013783 Immunoglobulin-like fold VI35_00540 558a6b68c17e002fceb09f4e0ae82454 482 Pfam PF12801 4Fe-4S binding domain 100 141 7.9E-9 T 17-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VI35_00540 558a6b68c17e002fceb09f4e0ae82454 482 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 278 289 - T 17-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VI35_00540 558a6b68c17e002fceb09f4e0ae82454 482 Pfam PF13746 4Fe-4S dicluster domain 226 330 9.7E-41 T 17-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VI35_00540 558a6b68c17e002fceb09f4e0ae82454 482 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 360 480 3.3E-30 T 17-10-2018 IPR032879 FixG, C-terminal immunoglobulin-like domain VI35_12730 0054d650cdb5d9d67c159dcea1dd0a87 385 Gene3D G3DSA:1.10.230.10 233 331 1.0E-124 T 17-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain VI35_12730 0054d650cdb5d9d67c159dcea1dd0a87 385 ProSitePatterns PS00480 Citrate synthase signature. 267 279 - T 17-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 VI35_12730 0054d650cdb5d9d67c159dcea1dd0a87 385 SUPERFAMILY SSF48256 17 384 8.24E-122 T 17-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 VI35_12730 0054d650cdb5d9d67c159dcea1dd0a87 385 TIGRFAM TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II 17 384 1.9E-153 T 17-10-2018 IPR011278 2-methylcitrate synthase/citrate synthase type I GO:0005737|GO:0046912 VI35_12730 0054d650cdb5d9d67c159dcea1dd0a87 385 PIRSF PIRSF001369 11 385 9.2E-108 T 17-10-2018 IPR024176 Citrate synthase, bacterial-type VI35_12730 0054d650cdb5d9d67c159dcea1dd0a87 385 Pfam PF00285 Citrate synthase, C-terminal domain 18 366 1.6E-111 T 17-10-2018 IPR002020 Citrate synthase GO:0046912 VI35_12730 0054d650cdb5d9d67c159dcea1dd0a87 385 PRINTS PR00143 Citrate synthase signature 185 200 5.5E-36 T 17-10-2018 IPR002020 Citrate synthase GO:0046912 VI35_12730 0054d650cdb5d9d67c159dcea1dd0a87 385 PRINTS PR00143 Citrate synthase signature 260 280 5.5E-36 T 17-10-2018 IPR002020 Citrate synthase GO:0046912 VI35_12730 0054d650cdb5d9d67c159dcea1dd0a87 385 PRINTS PR00143 Citrate synthase signature 337 351 5.5E-36 T 17-10-2018 IPR002020 Citrate synthase GO:0046912 VI35_12730 0054d650cdb5d9d67c159dcea1dd0a87 385 PRINTS PR00143 Citrate synthase signature 207 235 5.5E-36 T 17-10-2018 IPR002020 Citrate synthase GO:0046912 VI35_12730 0054d650cdb5d9d67c159dcea1dd0a87 385 PRINTS PR00143 Citrate synthase signature 317 333 5.5E-36 T 17-10-2018 IPR002020 Citrate synthase GO:0046912 VI35_12730 0054d650cdb5d9d67c159dcea1dd0a87 385 PRINTS PR00143 Citrate synthase signature 135 148 5.5E-36 T 17-10-2018 IPR002020 Citrate synthase GO:0046912 VI35_12730 0054d650cdb5d9d67c159dcea1dd0a87 385 Gene3D G3DSA:1.10.580.10 38 364 1.0E-124 T 17-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 VI35_14145 964fb1b31a3ba6ae9acb7b16117804c0 362 SUPERFAMILY SSF49503 119 282 2.68E-50 T 17-10-2018 IPR008972 Cupredoxin VI35_14145 964fb1b31a3ba6ae9acb7b16117804c0 362 Gene3D G3DSA:2.60.40.420 113 282 1.4E-59 T 17-10-2018 IPR008972 Cupredoxin VI35_14145 964fb1b31a3ba6ae9acb7b16117804c0 362 Pfam PF06481 COX Aromatic Rich Motif 239 285 9.9E-20 T 17-10-2018 IPR010514 COX aromatic rich motif GO:0008827|GO:0016021|GO:0022900|GO:0055114 VI35_14145 964fb1b31a3ba6ae9acb7b16117804c0 362 SUPERFAMILY SSF81464 27 117 1.96E-22 T 17-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_14145 964fb1b31a3ba6ae9acb7b16117804c0 362 TIGRFAM TIGR01433 CyoA: ubiquinol oxidase, subunit II 14 239 2.5E-117 T 17-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 VI35_14145 964fb1b31a3ba6ae9acb7b16117804c0 362 PIRSF PIRSF000292 2 315 1.8E-131 T 17-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 VI35_14145 964fb1b31a3ba6ae9acb7b16117804c0 362 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 151 219 8.1E-5 T 17-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_14145 964fb1b31a3ba6ae9acb7b16117804c0 362 Gene3D G3DSA:1.10.287.90 27 112 1.1E-31 T 17-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_07630 dff538e69f31caf5042c98fcf63af77a 234 Pfam PF04397 LytTr DNA-binding domain 139 231 1.0E-19 T 17-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 VI35_07630 dff538e69f31caf5042c98fcf63af77a 234 SMART SM00448 2 110 4.1E-25 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_07630 dff538e69f31caf5042c98fcf63af77a 234 SMART SM00850 138 232 3.1E-24 T 17-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 VI35_07630 dff538e69f31caf5042c98fcf63af77a 234 SUPERFAMILY SSF52172 1 115 3.84E-31 T 17-10-2018 IPR011006 CheY-like superfamily VI35_07630 dff538e69f31caf5042c98fcf63af77a 234 Gene3D G3DSA:2.40.50.1020 145 233 4.1E-8 T 17-10-2018 VI35_07630 dff538e69f31caf5042c98fcf63af77a 234 Pfam PF00072 Response regulator receiver domain 5 110 7.4E-23 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_07630 dff538e69f31caf5042c98fcf63af77a 234 Gene3D G3DSA:3.40.50.2300 1 120 1.1E-30 T 17-10-2018 VI35_16115 39d6644dc781bde20c4d43dacf7bc49a 221 SUPERFAMILY SSF53335 9 219 1.11E-26 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_16115 39d6644dc781bde20c4d43dacf7bc49a 221 Pfam PF13649 Methyltransferase domain 45 139 2.0E-10 T 17-10-2018 VI35_16115 39d6644dc781bde20c4d43dacf7bc49a 221 Gene3D G3DSA:3.40.50.150 4 221 5.6E-29 T 17-10-2018 VI35_08000 3496ba599acea0022e3e03eeb284c1dd 346 Pfam PF13551 Winged helix-turn helix 10 74 2.4E-7 T 17-10-2018 VI35_08000 3496ba599acea0022e3e03eeb284c1dd 346 SUPERFAMILY SSF53098 164 331 3.79E-27 T 17-10-2018 IPR012337 Ribonuclease H-like superfamily VI35_08000 3496ba599acea0022e3e03eeb284c1dd 346 Pfam PF00665 Integrase core domain 162 282 9.5E-21 T 17-10-2018 IPR001584 Integrase, catalytic core GO:0015074 VI35_08000 3496ba599acea0022e3e03eeb284c1dd 346 Gene3D G3DSA:3.30.420.10 160 327 3.1E-15 T 17-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VI35_08000 3496ba599acea0022e3e03eeb284c1dd 346 SUPERFAMILY SSF46689 12 114 3.94E-9 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_05700 3496ba599acea0022e3e03eeb284c1dd 346 Pfam PF13551 Winged helix-turn helix 10 74 2.4E-7 T 17-10-2018 VI35_05700 3496ba599acea0022e3e03eeb284c1dd 346 SUPERFAMILY SSF53098 164 331 3.79E-27 T 17-10-2018 IPR012337 Ribonuclease H-like superfamily VI35_05700 3496ba599acea0022e3e03eeb284c1dd 346 Pfam PF00665 Integrase core domain 162 282 9.5E-21 T 17-10-2018 IPR001584 Integrase, catalytic core GO:0015074 VI35_05700 3496ba599acea0022e3e03eeb284c1dd 346 Gene3D G3DSA:3.30.420.10 160 327 3.1E-15 T 17-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VI35_05700 3496ba599acea0022e3e03eeb284c1dd 346 SUPERFAMILY SSF46689 12 114 3.94E-9 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_07895 3496ba599acea0022e3e03eeb284c1dd 346 Pfam PF13551 Winged helix-turn helix 10 74 2.4E-7 T 17-10-2018 VI35_07895 3496ba599acea0022e3e03eeb284c1dd 346 SUPERFAMILY SSF53098 164 331 3.79E-27 T 17-10-2018 IPR012337 Ribonuclease H-like superfamily VI35_07895 3496ba599acea0022e3e03eeb284c1dd 346 Pfam PF00665 Integrase core domain 162 282 9.5E-21 T 17-10-2018 IPR001584 Integrase, catalytic core GO:0015074 VI35_07895 3496ba599acea0022e3e03eeb284c1dd 346 Gene3D G3DSA:3.30.420.10 160 327 3.1E-15 T 17-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VI35_07895 3496ba599acea0022e3e03eeb284c1dd 346 SUPERFAMILY SSF46689 12 114 3.94E-9 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_02805 69c9cf16df2995eba852fbacb8a1dde2 600 Gene3D G3DSA:3.40.350.10 150 298 3.3E-25 T 17-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal VI35_02805 69c9cf16df2995eba852fbacb8a1dde2 600 Pfam PF16189 Creatinase/Prolidase N-terminal domain 151 312 3.2E-33 T 17-10-2018 VI35_02805 69c9cf16df2995eba852fbacb8a1dde2 600 Gene3D G3DSA:3.90.230.10 306 600 4.6E-99 T 17-10-2018 VI35_02805 69c9cf16df2995eba852fbacb8a1dde2 600 Pfam PF01321 Creatinase/Prolidase N-terminal domain 10 142 9.7E-17 T 17-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 VI35_02805 69c9cf16df2995eba852fbacb8a1dde2 600 Pfam PF16188 C-terminal region of peptidase_M24 541 598 2.0E-23 T 17-10-2018 IPR032416 Peptidase M24, C-terminal domain VI35_02805 69c9cf16df2995eba852fbacb8a1dde2 600 SUPERFAMILY SSF53092 8 138 7.15E-13 T 17-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal VI35_02805 69c9cf16df2995eba852fbacb8a1dde2 600 SUPERFAMILY SSF55920 309 566 8.64E-61 T 17-10-2018 IPR036005 Creatinase/aminopeptidase-like VI35_02805 69c9cf16df2995eba852fbacb8a1dde2 600 Pfam PF00557 Metallopeptidase family M24 315 532 8.7E-45 T 17-10-2018 IPR000994 Peptidase M24 VI35_02805 69c9cf16df2995eba852fbacb8a1dde2 600 Gene3D G3DSA:3.40.350.10 4 149 1.3E-39 T 17-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal VI35_05285 6b77d30f110cb12963b3fd5a38e540c1 132 PIRSF PIRSF000180 5 132 1.3E-39 T 17-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 VI35_05285 6b77d30f110cb12963b3fd5a38e540c1 132 Gene3D G3DSA:1.20.1300.10 5 132 2.6E-50 T 17-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_05285 6b77d30f110cb12963b3fd5a38e540c1 132 ProDom PD015900 FUMARATE MEMBRANE REDUCTASE C SUBUNIT TRANSMEMBRANE INNER HYDROPHOBIC REDUCTASE POLYPEPTIDE 11 117 2.0E-19 T 17-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 VI35_05285 6b77d30f110cb12963b3fd5a38e540c1 132 SUPERFAMILY SSF81343 6 131 9.97E-43 T 17-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_05285 6b77d30f110cb12963b3fd5a38e540c1 132 Pfam PF02300 Fumarate reductase subunit C 6 131 2.3E-50 T 17-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 VI35_15415 8cefbadb72fc53ea9b7ad743d904dd7a 308 SUPERFAMILY SSF55073 157 304 2.43E-39 T 17-10-2018 IPR029787 Nucleotide cyclase VI35_15415 8cefbadb72fc53ea9b7ad743d904dd7a 308 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 148 303 4.1E-35 T 17-10-2018 IPR000160 GGDEF domain VI35_15415 8cefbadb72fc53ea9b7ad743d904dd7a 308 Pfam PF00990 Diguanylate cyclase, GGDEF domain 154 303 5.1E-39 T 17-10-2018 IPR000160 GGDEF domain VI35_15415 8cefbadb72fc53ea9b7ad743d904dd7a 308 Gene3D G3DSA:3.30.70.270 143 306 7.9E-45 T 17-10-2018 VI35_15415 8cefbadb72fc53ea9b7ad743d904dd7a 308 SMART SM00267 141 308 8.5E-46 T 17-10-2018 IPR000160 GGDEF domain VI35_09655 78cbf568acb8d1ec0073f6f17dfb89ee 476 PRINTS PR00131 Glycosyl hydrolase family 1 signature 304 318 7.5E-15 T 17-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 VI35_09655 78cbf568acb8d1ec0073f6f17dfb89ee 476 PRINTS PR00131 Glycosyl hydrolase family 1 signature 391 402 7.5E-15 T 17-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 VI35_09655 78cbf568acb8d1ec0073f6f17dfb89ee 476 PRINTS PR00131 Glycosyl hydrolase family 1 signature 412 429 7.5E-15 T 17-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 VI35_09655 78cbf568acb8d1ec0073f6f17dfb89ee 476 PRINTS PR00131 Glycosyl hydrolase family 1 signature 370 378 7.5E-15 T 17-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 VI35_09655 78cbf568acb8d1ec0073f6f17dfb89ee 476 PRINTS PR00131 Glycosyl hydrolase family 1 signature 437 449 7.5E-15 T 17-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 VI35_09655 78cbf568acb8d1ec0073f6f17dfb89ee 476 SUPERFAMILY SSF51445 4 473 1.77E-157 T 17-10-2018 IPR017853 Glycoside hydrolase superfamily VI35_09655 78cbf568acb8d1ec0073f6f17dfb89ee 476 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 10 24 - T 17-10-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site VI35_09655 78cbf568acb8d1ec0073f6f17dfb89ee 476 Gene3D G3DSA:3.20.20.80 2 475 3.0E-151 T 17-10-2018 VI35_09655 78cbf568acb8d1ec0073f6f17dfb89ee 476 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 370 378 - T 17-10-2018 IPR018120 Glycoside hydrolase family 1, active site VI35_09655 78cbf568acb8d1ec0073f6f17dfb89ee 476 Pfam PF00232 Glycosyl hydrolase family 1 5 472 4.8E-130 T 17-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 VI35_09355 a2a06392b5722bd223c76243e05c487a 498 Gene3D G3DSA:3.40.50.300 268 495 3.8E-41 T 17-10-2018 VI35_09355 a2a06392b5722bd223c76243e05c487a 498 ProSitePatterns PS00211 ABC transporters family signature. 399 413 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_09355 a2a06392b5722bd223c76243e05c487a 498 Pfam PF00005 ABC transporter 274 426 6.3E-20 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_09355 a2a06392b5722bd223c76243e05c487a 498 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_09355 a2a06392b5722bd223c76243e05c487a 498 SUPERFAMILY SSF52540 5 222 1.95E-56 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_09355 a2a06392b5722bd223c76243e05c487a 498 Pfam PF00005 ABC transporter 22 171 7.3E-30 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_09355 a2a06392b5722bd223c76243e05c487a 498 Gene3D G3DSA:3.40.50.300 1 238 1.2E-56 T 17-10-2018 VI35_09355 a2a06392b5722bd223c76243e05c487a 498 SUPERFAMILY SSF52540 273 485 4.31E-44 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_09355 a2a06392b5722bd223c76243e05c487a 498 SMART SM00382 280 475 6.1E-6 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_09355 a2a06392b5722bd223c76243e05c487a 498 SMART SM00382 31 234 5.4E-8 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_05195 8a9de3ad225dd3b21a460ad83f543bd9 264 Pfam PF00005 ABC transporter 19 167 2.9E-33 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_05195 8a9de3ad225dd3b21a460ad83f543bd9 264 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_05195 8a9de3ad225dd3b21a460ad83f543bd9 264 Gene3D G3DSA:3.40.50.300 1 258 8.6E-77 T 17-10-2018 VI35_05195 8a9de3ad225dd3b21a460ad83f543bd9 264 SUPERFAMILY SSF52540 1 237 6.81E-76 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_05195 8a9de3ad225dd3b21a460ad83f543bd9 264 SMART SM00382 28 215 4.6E-13 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_08705 5e67673bcac31a11d341ff877d3d6fc2 514 ProSitePatterns PS00455 Putative AMP-binding domain signature. 172 183 - T 17-10-2018 IPR020845 AMP-binding, conserved site VI35_08705 5e67673bcac31a11d341ff877d3d6fc2 514 SUPERFAMILY SSF56801 25 511 2.88E-121 T 17-10-2018 VI35_08705 5e67673bcac31a11d341ff877d3d6fc2 514 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 60 446 8.3E-101 T 17-10-2018 IPR010071 Amino acid adenylation domain VI35_08705 5e67673bcac31a11d341ff877d3d6fc2 514 Gene3D G3DSA:3.30.300.30 416 514 8.9E-29 T 17-10-2018 VI35_08705 5e67673bcac31a11d341ff877d3d6fc2 514 Gene3D G3DSA:3.40.50.12780 20 414 7.4E-96 T 17-10-2018 VI35_08705 5e67673bcac31a11d341ff877d3d6fc2 514 Pfam PF00501 AMP-binding enzyme 44 422 1.1E-72 T 17-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 VI35_08705 5e67673bcac31a11d341ff877d3d6fc2 514 Pfam PF13193 AMP-binding enzyme C-terminal domain 430 504 2.0E-10 T 17-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain VI35_15985 cbda77d352d9e96258ac035a468be790 404 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 264 285 4.4E-45 T 17-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VI35_15985 cbda77d352d9e96258ac035a468be790 404 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 368 383 4.4E-45 T 17-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VI35_15985 cbda77d352d9e96258ac035a468be790 404 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 36 59 4.4E-45 T 17-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VI35_15985 cbda77d352d9e96258ac035a468be790 404 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 321 344 4.4E-45 T 17-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VI35_15985 cbda77d352d9e96258ac035a468be790 404 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 78 98 4.4E-45 T 17-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VI35_15985 cbda77d352d9e96258ac035a468be790 404 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 297 321 4.4E-45 T 17-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VI35_15985 cbda77d352d9e96258ac035a468be790 404 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 383 403 4.4E-45 T 17-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VI35_15985 cbda77d352d9e96258ac035a468be790 404 Gene3D G3DSA:1.10.287.470 100 126 1.2E-8 T 17-10-2018 VI35_15985 cbda77d352d9e96258ac035a468be790 404 Gene3D G3DSA:1.10.287.470 156 251 1.2E-16 T 17-10-2018 VI35_15985 cbda77d352d9e96258ac035a468be790 404 SUPERFAMILY SSF111369 57 125 1.96E-5 T 17-10-2018 VI35_15985 cbda77d352d9e96258ac035a468be790 404 Gene3D G3DSA:2.40.50.100 252 288 1.2E-16 T 17-10-2018 VI35_15985 cbda77d352d9e96258ac035a468be790 404 Gene3D G3DSA:2.40.50.100 65 99 1.2E-8 T 17-10-2018 VI35_15985 cbda77d352d9e96258ac035a468be790 404 Pfam PF13437 HlyD family secretion protein 253 367 5.8E-16 T 17-10-2018 VI35_15985 cbda77d352d9e96258ac035a468be790 404 Pfam PF13533 Biotin-lipoyl like 67 112 2.5E-8 T 17-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VI35_15985 cbda77d352d9e96258ac035a468be790 404 Gene3D G3DSA:2.40.30.170 289 381 1.2E-16 T 17-10-2018 VI35_15985 cbda77d352d9e96258ac035a468be790 404 Gene3D G3DSA:2.40.30.170 54 64 1.2E-8 T 17-10-2018 VI35_15985 cbda77d352d9e96258ac035a468be790 404 ProSitePatterns PS00543 HlyD family secretion proteins signature. 368 390 - T 17-10-2018 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 VI35_08125 7106f9381fe3139dcf5c989186877fe9 450 Gene3D G3DSA:1.20.120.1320 42 135 1.8E-96 T 17-10-2018 VI35_08125 7106f9381fe3139dcf5c989186877fe9 450 Pfam PF00696 Amino acid kinase family 5 278 4.4E-47 T 17-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 VI35_08125 7106f9381fe3139dcf5c989186877fe9 450 Gene3D G3DSA:3.30.70.260 304 448 6.8E-50 T 17-10-2018 VI35_08125 7106f9381fe3139dcf5c989186877fe9 450 SUPERFAMILY SSF53633 5 291 1.44E-75 T 17-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VI35_08125 7106f9381fe3139dcf5c989186877fe9 450 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 6 449 1.4E-120 T 17-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VI35_08125 7106f9381fe3139dcf5c989186877fe9 450 Gene3D G3DSA:3.30.70.260 310 384 6.8E-50 T 17-10-2018 VI35_08125 7106f9381fe3139dcf5c989186877fe9 450 SUPERFAMILY SSF55021 297 395 2.14E-18 T 17-10-2018 VI35_08125 7106f9381fe3139dcf5c989186877fe9 450 SUPERFAMILY SSF55021 377 448 1.03E-13 T 17-10-2018 VI35_08125 7106f9381fe3139dcf5c989186877fe9 450 PIRSF PIRSF000726 2 450 5.6E-126 T 17-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VI35_08125 7106f9381fe3139dcf5c989186877fe9 450 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 4 448 1.7E-128 T 17-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VI35_08125 7106f9381fe3139dcf5c989186877fe9 450 ProSitePatterns PS00324 Aspartokinase signature. 6 14 - T 17-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VI35_08125 7106f9381fe3139dcf5c989186877fe9 450 Gene3D G3DSA:3.40.1160.10 6 290 1.8E-96 T 17-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VI35_16405 a9d88f846625e2777f7bd54936c7ace3 170 SUPERFAMILY SSF144064 4 163 1.31E-53 T 17-10-2018 VI35_16405 a9d88f846625e2777f7bd54936c7ace3 170 Gene3D G3DSA:3.40.1570.10 1 169 1.6E-59 T 17-10-2018 VI35_16405 a9d88f846625e2777f7bd54936c7ace3 170 TIGRFAM TIGR04108 HutX: putative heme utilization carrier protein HutX 7 160 7.9E-64 T 17-10-2018 IPR010413 Heme utilization carrier protein HutX-like VI35_16405 a9d88f846625e2777f7bd54936c7ace3 170 Pfam PF06228 Haem utilisation ChuX/HutX 23 160 2.5E-35 T 17-10-2018 IPR010413 Heme utilization carrier protein HutX-like VI35_16405 a9d88f846625e2777f7bd54936c7ace3 170 PIRSF PIRSF030840 1 166 1.3E-58 T 17-10-2018 IPR010413 Heme utilization carrier protein HutX-like VI35_13735 e228532fe01410c58797848c2d9ba425 82 TIGRFAM TIGR02647 DNA: TIGR02647 family protein 8 80 1.3E-20 T 17-10-2018 IPR013468 Conserved hypothetical protein CHP02647 VI35_13735 e228532fe01410c58797848c2d9ba425 82 Pfam PF06146 Phosphate-starvation-inducible E 11 74 5.7E-6 T 17-10-2018 IPR020948 Phosphate-starvation-induced PsiE-like VI35_15915 0bcfffff6b163e5d6795cf6d3a54e04e 244 SUPERFAMILY SSF51735 3 235 2.23E-48 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_15915 0bcfffff6b163e5d6795cf6d3a54e04e 244 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 127 155 - T 17-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 VI35_15915 0bcfffff6b163e5d6795cf6d3a54e04e 244 Pfam PF00106 short chain dehydrogenase 5 180 2.1E-32 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_15915 0bcfffff6b163e5d6795cf6d3a54e04e 244 Gene3D G3DSA:3.40.50.720 2 230 2.8E-45 T 17-10-2018 VI35_15915 0bcfffff6b163e5d6795cf6d3a54e04e 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 178 6.9E-18 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_15915 0bcfffff6b163e5d6795cf6d3a54e04e 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 68 79 6.9E-18 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_15915 0bcfffff6b163e5d6795cf6d3a54e04e 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 114 130 6.9E-18 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_15915 0bcfffff6b163e5d6795cf6d3a54e04e 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 6.9E-18 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_15915 0bcfffff6b163e5d6795cf6d3a54e04e 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 159 6.9E-18 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_12620 b591019d5afe3abbb25b2b5ed1e5de50 153 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 26 140 1.5E-39 T 17-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 VI35_12620 b591019d5afe3abbb25b2b5ed1e5de50 153 Pfam PF03061 Thioesterase superfamily 57 133 2.8E-15 T 17-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 VI35_12620 b591019d5afe3abbb25b2b5ed1e5de50 153 Gene3D G3DSA:3.10.129.10 5 150 2.6E-59 T 17-10-2018 VI35_12620 b591019d5afe3abbb25b2b5ed1e5de50 153 SUPERFAMILY SSF54637 16 145 8.22E-32 T 17-10-2018 IPR029069 HotDog domain superfamily VI35_02095 3619856e723219dba507d7b5525213b6 261 SUPERFAMILY SSF117143 93 222 3.01E-36 T 17-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like VI35_02095 3619856e723219dba507d7b5525213b6 261 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 182 258 7.7E-25 T 17-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain VI35_02095 3619856e723219dba507d7b5525213b6 261 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 17-10-2018 IPR019776 Flagellar basal body rod protein, conserved site VI35_02095 3619856e723219dba507d7b5525213b6 261 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 260 7.7E-113 T 17-10-2018 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 VI35_02095 3619856e723219dba507d7b5525213b6 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 148 243 5.1E-34 T 17-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G VI35_02095 3619856e723219dba507d7b5525213b6 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 136 1.8E-44 T 17-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G VI35_02095 3619856e723219dba507d7b5525213b6 261 Pfam PF00460 Flagella basal body rod protein 5 35 7.2E-11 T 17-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 VI35_00240 6c04a6488ce20a3ee0610b8b62c932ba 594 Gene3D G3DSA:3.30.70.270 415 579 6.3E-52 T 17-10-2018 VI35_00240 6c04a6488ce20a3ee0610b8b62c932ba 594 Pfam PF00990 Diguanylate cyclase, GGDEF domain 430 576 2.9E-41 T 17-10-2018 IPR000160 GGDEF domain VI35_00240 6c04a6488ce20a3ee0610b8b62c932ba 594 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 428 580 1.4E-40 T 17-10-2018 IPR000160 GGDEF domain VI35_00240 6c04a6488ce20a3ee0610b8b62c932ba 594 Gene3D G3DSA:1.25.40.10 86 315 1.6E-19 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_00240 6c04a6488ce20a3ee0610b8b62c932ba 594 SUPERFAMILY SSF55073 435 580 1.49E-44 T 17-10-2018 IPR029787 Nucleotide cyclase VI35_00240 6c04a6488ce20a3ee0610b8b62c932ba 594 SUPERFAMILY SSF48452 167 353 6.75E-15 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_00240 6c04a6488ce20a3ee0610b8b62c932ba 594 SMART SM00267 419 580 1.1E-57 T 17-10-2018 IPR000160 GGDEF domain VI35_00240 6c04a6488ce20a3ee0610b8b62c932ba 594 Pfam PF14559 Tetratricopeptide repeat 182 244 7.4E-6 T 17-10-2018 VI35_00240 6c04a6488ce20a3ee0610b8b62c932ba 594 SUPERFAMILY SSF48452 42 194 1.7E-5 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_15990 d92ebc84233645ed78f1a7b4a1e586bf 710 SUPERFAMILY SSF90123 138 451 7.06E-46 T 17-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VI35_15990 d92ebc84233645ed78f1a7b4a1e586bf 710 SMART SM00382 490 677 1.2E-20 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_15990 d92ebc84233645ed78f1a7b4a1e586bf 710 SUPERFAMILY SSF52540 456 689 4.52E-54 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_15990 d92ebc84233645ed78f1a7b4a1e586bf 710 ProSitePatterns PS00211 ABC transporters family signature. 601 615 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_15990 d92ebc84233645ed78f1a7b4a1e586bf 710 Gene3D G3DSA:3.40.50.300 455 700 2.6E-63 T 17-10-2018 VI35_15990 d92ebc84233645ed78f1a7b4a1e586bf 710 Pfam PF00005 ABC transporter 485 629 2.2E-31 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_15990 d92ebc84233645ed78f1a7b4a1e586bf 710 Pfam PF00664 ABC transporter transmembrane region 152 408 1.6E-16 T 17-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 VI35_15990 d92ebc84233645ed78f1a7b4a1e586bf 710 Gene3D G3DSA:1.20.1560.10 138 448 2.4E-44 T 17-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VI35_19855 d8828fc8e28acd22554ade990a36140e 137 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 126 2.3E-58 T 17-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_19855 d8828fc8e28acd22554ade990a36140e 137 PRINTS PR00060 Ribosomal protein L16 signature 42 53 2.1E-39 T 17-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_19855 d8828fc8e28acd22554ade990a36140e 137 PRINTS PR00060 Ribosomal protein L16 signature 88 117 2.1E-39 T 17-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_19855 d8828fc8e28acd22554ade990a36140e 137 PRINTS PR00060 Ribosomal protein L16 signature 24 36 2.1E-39 T 17-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_19855 d8828fc8e28acd22554ade990a36140e 137 PRINTS PR00060 Ribosomal protein L16 signature 58 87 2.1E-39 T 17-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_19855 d8828fc8e28acd22554ade990a36140e 137 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 17-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_19855 d8828fc8e28acd22554ade990a36140e 137 SUPERFAMILY SSF54686 1 134 2.75E-54 T 17-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 VI35_19855 d8828fc8e28acd22554ade990a36140e 137 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 17-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_19855 d8828fc8e28acd22554ade990a36140e 137 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 37.172 T 17-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_19855 d8828fc8e28acd22554ade990a36140e 137 Gene3D G3DSA:3.90.1170.10 1 137 8.2E-56 T 17-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 VI35_19855 d8828fc8e28acd22554ade990a36140e 137 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 5.4E-48 T 17-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 VI35_08620 79f1442b087a2124ae9f368c5dd79084 214 Hamap MF_00235 Adenylate kinase [adk]. 1 214 53.089 T 17-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 VI35_08620 79f1442b087a2124ae9f368c5dd79084 214 PRINTS PR00094 Adenylate kinase signature 32 46 3.8E-35 T 17-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 VI35_08620 79f1442b087a2124ae9f368c5dd79084 214 PRINTS PR00094 Adenylate kinase signature 81 97 3.8E-35 T 17-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 VI35_08620 79f1442b087a2124ae9f368c5dd79084 214 PRINTS PR00094 Adenylate kinase signature 4 17 3.8E-35 T 17-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 VI35_08620 79f1442b087a2124ae9f368c5dd79084 214 PRINTS PR00094 Adenylate kinase signature 156 171 3.8E-35 T 17-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 VI35_08620 79f1442b087a2124ae9f368c5dd79084 214 PRINTS PR00094 Adenylate kinase signature 173 187 3.8E-35 T 17-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 VI35_08620 79f1442b087a2124ae9f368c5dd79084 214 Gene3D G3DSA:3.40.50.300 1 214 1.9E-78 T 17-10-2018 VI35_08620 79f1442b087a2124ae9f368c5dd79084 214 Pfam PF05191 Adenylate kinase, active site lid 123 158 8.6E-16 T 17-10-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 VI35_08620 79f1442b087a2124ae9f368c5dd79084 214 TIGRFAM TIGR01351 adk: adenylate kinase 2 213 3.8E-74 T 17-10-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 VI35_08620 79f1442b087a2124ae9f368c5dd79084 214 Pfam PF00406 Adenylate kinase 5 185 6.3E-58 T 17-10-2018 VI35_08620 79f1442b087a2124ae9f368c5dd79084 214 SUPERFAMILY SSF52540 1 212 5.65E-45 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_08620 79f1442b087a2124ae9f368c5dd79084 214 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 17-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 VI35_02685 55773d833dec458927f81f7939e0eae0 486 Pfam PF08323 Starch synthase catalytic domain 7 244 6.1E-76 T 17-10-2018 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 VI35_02685 55773d833dec458927f81f7939e0eae0 486 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 7 481 2.2E-162 T 17-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 VI35_02685 55773d833dec458927f81f7939e0eae0 486 Hamap MF_00484 Glycogen synthase [glgA]. 6 482 40.48 T 17-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 VI35_02685 55773d833dec458927f81f7939e0eae0 486 Pfam PF00534 Glycosyl transferases group 1 298 447 5.1E-18 T 17-10-2018 IPR001296 Glycosyl transferase, family 1 VI35_02685 55773d833dec458927f81f7939e0eae0 486 Gene3D G3DSA:3.40.50.2000 8 480 3.6E-166 T 17-10-2018 VI35_02685 55773d833dec458927f81f7939e0eae0 486 SUPERFAMILY SSF53756 5 484 3.77E-118 T 17-10-2018 VI35_02685 55773d833dec458927f81f7939e0eae0 486 Gene3D G3DSA:3.40.50.2000 258 466 3.6E-166 T 17-10-2018 VI35_03290 f9539c5ea00cfcebd106161f2a217cd6 307 Gene3D G3DSA:2.170.230.10 155 239 1.3E-77 T 17-10-2018 VI35_03290 f9539c5ea00cfcebd106161f2a217cd6 307 Gene3D G3DSA:2.10.109.10 78 280 1.3E-77 T 17-10-2018 VI35_03290 f9539c5ea00cfcebd106161f2a217cd6 307 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 144 156 1.3E-26 T 17-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 VI35_03290 f9539c5ea00cfcebd106161f2a217cd6 307 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 80 96 1.3E-26 T 17-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 VI35_03290 f9539c5ea00cfcebd106161f2a217cd6 307 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 240 259 1.3E-26 T 17-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 VI35_03290 f9539c5ea00cfcebd106161f2a217cd6 307 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 67 280 8.6E-48 T 17-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 VI35_03290 f9539c5ea00cfcebd106161f2a217cd6 307 ProSitePatterns PS00760 Signal peptidases I lysine active site. 146 158 - T 17-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 VI35_03290 f9539c5ea00cfcebd106161f2a217cd6 307 ProSitePatterns PS00761 Signal peptidases I signature 3. 245 258 - T 17-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 VI35_03290 f9539c5ea00cfcebd106161f2a217cd6 307 ProSitePatterns PS00501 Signal peptidases I serine active site. 89 96 - T 17-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 VI35_03290 f9539c5ea00cfcebd106161f2a217cd6 307 Pfam PF00717 Peptidase S24-like 86 166 3.6E-21 T 17-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C VI35_03290 f9539c5ea00cfcebd106161f2a217cd6 307 Pfam PF10502 Signal peptidase, peptidase S26 235 277 1.1E-6 T 17-10-2018 IPR019533 Peptidase S26 VI35_03290 f9539c5ea00cfcebd106161f2a217cd6 307 SUPERFAMILY SSF51306 78 305 3.4E-74 T 17-10-2018 IPR036286 LexA/Signal peptidase-like superfamily VI35_05640 6ce33986e83d5e6fc91466188fbf5c8f 383 SUPERFAMILY SSF56601 29 381 5.47E-90 T 17-10-2018 IPR012338 Beta-lactamase/transpeptidase-like VI35_05640 6ce33986e83d5e6fc91466188fbf5c8f 383 ProSitePatterns PS00336 Beta-lactamase class-C active site. 84 91 - T 17-10-2018 IPR001586 Beta-lactamase, class-C active site GO:0008800|GO:0017001|GO:0030288 KEGG: 00311+3.5.2.6 VI35_05640 6ce33986e83d5e6fc91466188fbf5c8f 383 Gene3D G3DSA:3.40.710.10 30 383 2.6E-134 T 17-10-2018 VI35_05640 6ce33986e83d5e6fc91466188fbf5c8f 383 Pfam PF00144 Beta-lactamase 36 378 8.3E-77 T 17-10-2018 IPR001466 Beta-lactamase-related VI35_03630 e0b85dea03b9aa81bc0447f3d67b75e9 115 Pfam PF03992 Antibiotic biosynthesis monooxygenase 5 85 3.3E-13 T 17-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain VI35_03630 e0b85dea03b9aa81bc0447f3d67b75e9 115 Gene3D G3DSA:3.30.70.100 5 109 2.3E-20 T 17-10-2018 VI35_03630 e0b85dea03b9aa81bc0447f3d67b75e9 115 SUPERFAMILY SSF54909 5 86 1.82E-19 T 17-10-2018 IPR011008 Dimeric alpha-beta barrel VI35_16790 3a280c90b8d8fd75797cfb8f9541ea42 520 SMART SM00917 369 500 8.6E-36 T 17-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 VI35_16790 3a280c90b8d8fd75797cfb8f9541ea42 520 SUPERFAMILY SSF110921 392 499 9.55E-23 T 17-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 VI35_16790 3a280c90b8d8fd75797cfb8f9541ea42 520 Gene3D G3DSA:3.20.20.70 1 277 1.5E-104 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_16790 3a280c90b8d8fd75797cfb8f9541ea42 520 Pfam PF08502 LeuA allosteric (dimerisation) domain 369 499 1.3E-33 T 17-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 VI35_16790 3a280c90b8d8fd75797cfb8f9541ea42 520 Pfam PF00682 HMGL-like 4 273 3.1E-97 T 17-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 VI35_16790 3a280c90b8d8fd75797cfb8f9541ea42 520 Gene3D G3DSA:1.10.238.260 280 394 3.1E-31 T 17-10-2018 VI35_16790 3a280c90b8d8fd75797cfb8f9541ea42 520 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 4 497 3.8E-239 T 17-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 VI35_16790 3a280c90b8d8fd75797cfb8f9541ea42 520 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 2 509 42.586 T 17-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 VI35_16790 3a280c90b8d8fd75797cfb8f9541ea42 520 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 12 28 - T 17-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 VI35_16790 3a280c90b8d8fd75797cfb8f9541ea42 520 Gene3D G3DSA:3.30.160.270 396 501 1.6E-8 T 17-10-2018 VI35_16790 3a280c90b8d8fd75797cfb8f9541ea42 520 SUPERFAMILY SSF51569 1 291 1.23E-98 T 17-10-2018 VI35_16790 3a280c90b8d8fd75797cfb8f9541ea42 520 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 199 212 - T 17-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 VI35_16595 5964b5a8bc77985238fbb8cfdeeb6ef9 627 Gene3D G3DSA:3.30.1370.100 487 580 8.9E-31 T 17-10-2018 VI35_16595 5964b5a8bc77985238fbb8cfdeeb6ef9 627 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 1 310 4.6E-97 T 17-10-2018 IPR002099 DNA mismatch repair protein family, N-terminal GO:0005524|GO:0006298|GO:0030983 VI35_16595 5964b5a8bc77985238fbb8cfdeeb6ef9 627 Pfam PF08676 MutL C terminal dimerisation domain 444 574 1.9E-24 T 17-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 VI35_16595 5964b5a8bc77985238fbb8cfdeeb6ef9 627 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 213 329 1.8E-37 T 17-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 VI35_16595 5964b5a8bc77985238fbb8cfdeeb6ef9 627 SUPERFAMILY SSF118116 442 599 1.22E-31 T 17-10-2018 IPR037198 MutL, C-terminal domain superfamily VI35_16595 5964b5a8bc77985238fbb8cfdeeb6ef9 627 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 93 99 - T 17-10-2018 IPR014762 DNA mismatch repair, conserved site VI35_16595 5964b5a8bc77985238fbb8cfdeeb6ef9 627 Gene3D G3DSA:2.30.42.20 444 598 8.9E-31 T 17-10-2018 VI35_16595 5964b5a8bc77985238fbb8cfdeeb6ef9 627 SMART SM00853 445 585 3.1E-13 T 17-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 VI35_16595 5964b5a8bc77985238fbb8cfdeeb6ef9 627 SUPERFAMILY SSF55874 1 207 1.15E-54 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_16595 5964b5a8bc77985238fbb8cfdeeb6ef9 627 Gene3D G3DSA:3.30.565.10 1 216 1.2E-70 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_16595 5964b5a8bc77985238fbb8cfdeeb6ef9 627 Gene3D G3DSA:3.30.230.10 217 329 1.5E-38 T 17-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VI35_16595 5964b5a8bc77985238fbb8cfdeeb6ef9 627 SUPERFAMILY SSF54211 191 330 3.53E-37 T 17-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VI35_16595 5964b5a8bc77985238fbb8cfdeeb6ef9 627 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 24 124 1.8E-12 T 17-10-2018 VI35_16595 5964b5a8bc77985238fbb8cfdeeb6ef9 627 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 1 627 25.256 T 17-10-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 VI35_16595 5964b5a8bc77985238fbb8cfdeeb6ef9 627 SMART SM01340 212 330 1.0E-57 T 17-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 VI35_12270 0ed2101f151c147a39a5bd5dc4e5463c 498 SUPERFAMILY SSF52540 138 473 9.48E-61 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_12270 0ed2101f151c147a39a5bd5dc4e5463c 498 Gene3D G3DSA:3.40.50.300 209 385 7.7E-51 T 17-10-2018 VI35_12270 0ed2101f151c147a39a5bd5dc4e5463c 498 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 387 466 1.1E-26 T 17-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like VI35_12270 0ed2101f151c147a39a5bd5dc4e5463c 498 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 9.4E-10 T 17-10-2018 IPR006073 GTP binding domain GO:0005525 VI35_12270 0ed2101f151c147a39a5bd5dc4e5463c 498 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 72 90 9.4E-10 T 17-10-2018 IPR006073 GTP binding domain GO:0005525 VI35_12270 0ed2101f151c147a39a5bd5dc4e5463c 498 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 212 377 7.1E-24 T 17-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VI35_12270 0ed2101f151c147a39a5bd5dc4e5463c 498 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 3 156 3.3E-20 T 17-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VI35_12270 0ed2101f151c147a39a5bd5dc4e5463c 498 Hamap MF_00195 GTPase Der [der]. 2 470 38.826 T 17-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 VI35_12270 0ed2101f151c147a39a5bd5dc4e5463c 498 Gene3D G3DSA:3.30.300.20 387 469 6.9E-21 T 17-10-2018 IPR015946 K homology domain-like, alpha/beta VI35_12270 0ed2101f151c147a39a5bd5dc4e5463c 498 Pfam PF01926 50S ribosome-binding GTPase 5 119 3.1E-28 T 17-10-2018 IPR006073 GTP binding domain GO:0005525 VI35_12270 0ed2101f151c147a39a5bd5dc4e5463c 498 Pfam PF01926 50S ribosome-binding GTPase 214 331 7.4E-25 T 17-10-2018 IPR006073 GTP binding domain GO:0005525 VI35_12270 0ed2101f151c147a39a5bd5dc4e5463c 498 PIRSF PIRSF006485 1 475 5.6E-179 T 17-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 VI35_12270 0ed2101f151c147a39a5bd5dc4e5463c 498 SUPERFAMILY SSF52540 4 164 4.74E-44 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_12270 0ed2101f151c147a39a5bd5dc4e5463c 498 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 3 467 9.4E-179 T 17-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 VI35_12270 0ed2101f151c147a39a5bd5dc4e5463c 498 Gene3D G3DSA:3.40.50.300 1 159 2.4E-41 T 17-10-2018 VI35_10710 4afa6eb3efdf1a0fa74b1eb763bf6671 214 Pfam PF13410 Glutathione S-transferase, C-terminal domain 124 185 1.9E-8 T 17-10-2018 VI35_10710 4afa6eb3efdf1a0fa74b1eb763bf6671 214 SUPERFAMILY SSF47616 88 211 1.81E-22 T 17-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily VI35_10710 4afa6eb3efdf1a0fa74b1eb763bf6671 214 Gene3D G3DSA:3.40.30.10 3 192 2.9E-39 T 17-10-2018 VI35_10710 4afa6eb3efdf1a0fa74b1eb763bf6671 214 SUPERFAMILY SSF52833 1 80 2.74E-14 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_10710 4afa6eb3efdf1a0fa74b1eb763bf6671 214 Gene3D G3DSA:1.20.1050.10 79 189 2.9E-39 T 17-10-2018 VI35_10710 4afa6eb3efdf1a0fa74b1eb763bf6671 214 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 76 1.1E-12 T 17-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 VI35_17160 f0fbb04623fc5ab53b4e8f2f6824a072 412 Gene3D G3DSA:1.20.1250.20 5 399 2.0E-56 T 17-10-2018 VI35_17160 f0fbb04623fc5ab53b4e8f2f6824a072 412 SUPERFAMILY SSF103473 9 402 3.14E-55 T 17-10-2018 IPR036259 MFS transporter superfamily VI35_17160 f0fbb04623fc5ab53b4e8f2f6824a072 412 Pfam PF07690 Major Facilitator Superfamily 15 351 1.1E-39 T 17-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VI35_17600 a1a95dbb6c09cdcd6018ea47523015cb 191 Gene3D G3DSA:3.40.50.1820 1 173 1.9E-47 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_17600 a1a95dbb6c09cdcd6018ea47523015cb 191 SUPERFAMILY SSF53474 2 162 1.19E-30 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_17600 a1a95dbb6c09cdcd6018ea47523015cb 191 Pfam PF06821 Serine hydrolase 4 164 3.9E-50 T 17-10-2018 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 VI35_04835 bbd0ace50e1c110eee16783b1476e70c 98 TIGRFAM TIGR00253 RNA_bind_YhbY: putative RNA-binding protein, YhbY family 3 97 7.6E-34 T 17-10-2018 IPR017924 RNA-binding protein YhbY GO:0003723 VI35_04835 bbd0ace50e1c110eee16783b1476e70c 98 SUPERFAMILY SSF75471 1 95 2.09E-29 T 17-10-2018 IPR035920 YhbY-like superfamily VI35_04835 bbd0ace50e1c110eee16783b1476e70c 98 Gene3D G3DSA:3.30.110.60 1 98 5.9E-34 T 17-10-2018 IPR035920 YhbY-like superfamily VI35_04835 bbd0ace50e1c110eee16783b1476e70c 98 SMART SM01103 3 86 2.4E-38 T 17-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 VI35_04835 bbd0ace50e1c110eee16783b1476e70c 98 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 9 98 4.0E-34 T 17-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 VI35_04835 bbd0ace50e1c110eee16783b1476e70c 98 Pfam PF01985 CRS1 / YhbY (CRM) domain 3 86 2.3E-20 T 17-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 VI35_01230 0eba0a64b2fab60c54c77a1aec529d72 376 Gene3D G3DSA:1.10.3820.10 4 181 1.8E-37 T 17-10-2018 IPR038266 NapC/NirT cytochrome c superfamily VI35_01230 0eba0a64b2fab60c54c77a1aec529d72 376 PIRSF PIRSF000014 3 376 1.7E-138 T 17-10-2018 IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK GO:0005506|GO:0009055|GO:0009276|GO:0016021|GO:0020037 VI35_01230 0eba0a64b2fab60c54c77a1aec529d72 376 SUPERFAMILY SSF46626 317 368 3.46E-5 T 17-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VI35_01230 0eba0a64b2fab60c54c77a1aec529d72 376 SUPERFAMILY SSF48695 10 178 2.1E-48 T 17-10-2018 IPR036280 Multiheme cytochrome superfamily VI35_01230 0eba0a64b2fab60c54c77a1aec529d72 376 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 8 176 4.7E-66 T 17-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal VI35_08835 7a0253265848e1f3289ba464294c698d 475 Pfam PF00929 Exonuclease 15 194 8.5E-26 T 17-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VI35_08835 7a0253265848e1f3289ba464294c698d 475 Pfam PF08411 Exonuclease C-terminal 214 473 1.9E-100 T 17-10-2018 IPR013620 Exodeoxyribonuclease I, C-terminal GO:0006281|GO:0008852 VI35_08835 7a0253265848e1f3289ba464294c698d 475 Gene3D G3DSA:3.30.420.10 4 203 1.7E-71 T 17-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VI35_08835 7a0253265848e1f3289ba464294c698d 475 Gene3D G3DSA:1.20.1280.70 362 422 2.5E-24 T 17-10-2018 VI35_08835 7a0253265848e1f3289ba464294c698d 475 Gene3D G3DSA:2.30.30.450 216 355 5.6E-56 T 17-10-2018 IPR038649 Exonuclease I, SH3-like domain superfamily VI35_08835 7a0253265848e1f3289ba464294c698d 475 PIRSF PIRSF000977 5 475 1.1E-197 T 17-10-2018 IPR023607 Exodeoxyribonuclease I GO:0004529 VI35_08835 7a0253265848e1f3289ba464294c698d 475 SUPERFAMILY SSF53098 11 475 9.66E-133 T 17-10-2018 IPR012337 Ribonuclease H-like superfamily VI35_12350 ab81613b3583f409cd8f7220a34b0996 404 Gene3D G3DSA:3.90.1150.10 5 373 5.5E-167 T 17-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VI35_12350 ab81613b3583f409cd8f7220a34b0996 404 PIRSF PIRSF005572 2 384 2.3E-137 T 17-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 VI35_12350 ab81613b3583f409cd8f7220a34b0996 404 Pfam PF00266 Aminotransferase class-V 5 368 7.2E-89 T 17-10-2018 IPR000192 Aminotransferase class V domain VI35_12350 ab81613b3583f409cd8f7220a34b0996 404 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 197 216 - T 17-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site VI35_12350 ab81613b3583f409cd8f7220a34b0996 404 Gene3D G3DSA:3.40.640.10 16 262 5.5E-167 T 17-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VI35_12350 ab81613b3583f409cd8f7220a34b0996 404 SUPERFAMILY SSF53383 5 390 4.21E-114 T 17-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VI35_12350 ab81613b3583f409cd8f7220a34b0996 404 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 1 395 55.338 T 17-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 VI35_12350 ab81613b3583f409cd8f7220a34b0996 404 TIGRFAM TIGR02006 IscS: cysteine desulfurase IscS 1 404 1.1E-233 T 17-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 VI35_00635 c3f047cf54104e1e8d0e2534babd4db3 71 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 66 4.5E-33 T 17-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_00635 c3f047cf54104e1e8d0e2534babd4db3 71 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 68 30.379 T 17-10-2018 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_00635 c3f047cf54104e1e8d0e2534babd4db3 71 ProSitePatterns PS01143 Ribosomal protein L31 signature. 35 56 - T 17-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_00635 c3f047cf54104e1e8d0e2534babd4db3 71 Pfam PF01197 Ribosomal protein L31 1 65 1.4E-29 T 17-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_00635 c3f047cf54104e1e8d0e2534babd4db3 71 SUPERFAMILY SSF143800 1 67 6.28E-28 T 17-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_00635 c3f047cf54104e1e8d0e2534babd4db3 71 PRINTS PR01249 Ribosomal protein L31 signature 31 46 9.4E-22 T 17-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_00635 c3f047cf54104e1e8d0e2534babd4db3 71 PRINTS PR01249 Ribosomal protein L31 signature 46 64 9.4E-22 T 17-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_00635 c3f047cf54104e1e8d0e2534babd4db3 71 PRINTS PR01249 Ribosomal protein L31 signature 2 19 9.4E-22 T 17-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_00635 c3f047cf54104e1e8d0e2534babd4db3 71 Gene3D G3DSA:2.30.170.50 1 70 1.2E-31 T 17-10-2018 VI35_09325 d793901b907093bc2f1b7ab6b15c2fb4 383 Pfam PF00155 Aminotransferase class I and II 31 380 6.9E-54 T 17-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 VI35_09325 d793901b907093bc2f1b7ab6b15c2fb4 383 Gene3D G3DSA:3.40.640.10 43 281 5.3E-126 T 17-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VI35_09325 d793901b907093bc2f1b7ab6b15c2fb4 383 SUPERFAMILY SSF53383 6 381 4.39E-98 T 17-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VI35_09325 d793901b907093bc2f1b7ab6b15c2fb4 383 Gene3D G3DSA:3.90.1150.10 21 380 5.3E-126 T 17-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VI35_03365 0e088a112a4920ca3022029f4a209af8 158 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 3 157 1.0E-66 T 17-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 VI35_03365 0e088a112a4920ca3022029f4a209af8 158 SUPERFAMILY SSF69765 1 157 1.57E-63 T 17-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 VI35_03365 0e088a112a4920ca3022029f4a209af8 158 Gene3D G3DSA:3.30.1330.50 1 158 2.1E-67 T 17-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 VI35_03365 0e088a112a4920ca3022029f4a209af8 158 Pfam PF02542 YgbB family 2 155 5.2E-62 T 17-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 VI35_03365 0e088a112a4920ca3022029f4a209af8 158 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 36 51 - T 17-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 VI35_03365 0e088a112a4920ca3022029f4a209af8 158 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 2 157 35.238 T 17-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 VI35_05205 a80432a8fded6aee40a689c4cc4fbf6e 188 Hamap MF_00141 Elongation factor P [efp]. 1 187 45.433 T 17-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 VI35_05205 a80432a8fded6aee40a689c4cc4fbf6e 188 Gene3D G3DSA:2.40.50.140 64 128 3.0E-23 T 17-10-2018 VI35_05205 a80432a8fded6aee40a689c4cc4fbf6e 188 SUPERFAMILY SSF50104 1 63 2.51E-17 T 17-10-2018 IPR008991 Translation protein SH3-like domain superfamily VI35_05205 a80432a8fded6aee40a689c4cc4fbf6e 188 SMART SM01185 67 122 3.4E-18 T 17-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 VI35_05205 a80432a8fded6aee40a689c4cc4fbf6e 188 Pfam PF01132 Elongation factor P (EF-P) OB domain 68 122 9.1E-16 T 17-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 VI35_05205 a80432a8fded6aee40a689c4cc4fbf6e 188 SUPERFAMILY SSF50249 65 128 6.85E-15 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_05205 a80432a8fded6aee40a689c4cc4fbf6e 188 SMART SM00841 130 186 1.9E-19 T 17-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 VI35_05205 a80432a8fded6aee40a689c4cc4fbf6e 188 Gene3D G3DSA:2.30.30.30 1 62 4.5E-19 T 17-10-2018 IPR014722 Ribosomal protein L2, domain 2 VI35_05205 a80432a8fded6aee40a689c4cc4fbf6e 188 SUPERFAMILY SSF50249 130 187 6.77E-12 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_05205 a80432a8fded6aee40a689c4cc4fbf6e 188 TIGRFAM TIGR00038 efp: translation elongation factor P 3 187 2.1E-59 T 17-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 VI35_05205 a80432a8fded6aee40a689c4cc4fbf6e 188 PIRSF PIRSF005901 1 188 3.1E-54 T 17-10-2018 IPR020599 Translation elongation factor P/YeiP VI35_05205 a80432a8fded6aee40a689c4cc4fbf6e 188 Gene3D G3DSA:2.40.50.140 129 188 8.4E-23 T 17-10-2018 VI35_05205 a80432a8fded6aee40a689c4cc4fbf6e 188 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 3 60 2.4E-19 T 17-10-2018 IPR013185 Translation elongation factor, KOW-like VI35_05205 a80432a8fded6aee40a689c4cc4fbf6e 188 Pfam PF09285 Elongation factor P, C-terminal 130 186 2.5E-18 T 17-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 VI35_10335 7c097191e52c2e2909fcb6df120894d9 320 Gene3D G3DSA:1.10.530.10 67 315 8.6E-87 T 17-10-2018 VI35_10335 7c097191e52c2e2909fcb6df120894d9 320 SUPERFAMILY SSF53955 12 318 1.22E-97 T 17-10-2018 IPR023346 Lysozyme-like domain superfamily VI35_10335 7c097191e52c2e2909fcb6df120894d9 320 Pfam PF13406 Transglycosylase SLT domain 25 316 2.5E-104 T 17-10-2018 IPR031304 Transglycosylase SLT domain 2 VI35_10335 7c097191e52c2e2909fcb6df120894d9 320 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 24 319 9.3E-109 T 17-10-2018 IPR011970 Lytic murein transglycosylase VI35_10335 7c097191e52c2e2909fcb6df120894d9 320 Gene3D G3DSA:1.10.8.350 40 200 8.6E-87 T 17-10-2018 VI35_12645 41fbc86c322f40611ecb6d8a97d614c9 513 Pfam PF03471 Transporter associated domain 433 511 2.7E-19 T 17-10-2018 IPR005170 Transporter-associated domain VI35_12645 41fbc86c322f40611ecb6d8a97d614c9 513 Gene3D G3DSA:3.10.580.10 281 433 7.5E-46 T 17-10-2018 VI35_12645 41fbc86c322f40611ecb6d8a97d614c9 513 Gene3D G3DSA:3.30.465.10 434 511 2.5E-18 T 17-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 VI35_12645 41fbc86c322f40611ecb6d8a97d614c9 513 Pfam PF03741 Integral membrane protein TerC family 14 203 4.3E-47 T 17-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 VI35_12645 41fbc86c322f40611ecb6d8a97d614c9 513 SUPERFAMILY SSF54631 288 422 3.92E-24 T 17-10-2018 VI35_12645 41fbc86c322f40611ecb6d8a97d614c9 513 SUPERFAMILY SSF56176 427 511 3.0E-19 T 17-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 VI35_12645 41fbc86c322f40611ecb6d8a97d614c9 513 SMART SM01091 431 512 1.7E-25 T 17-10-2018 IPR005170 Transporter-associated domain VI35_08075 72907e2518e47fe18771f5a4eae14bd8 200 Gene3D G3DSA:1.20.58.320 2 88 4.2E-21 T 17-10-2018 VI35_08075 72907e2518e47fe18771f5a4eae14bd8 200 SUPERFAMILY SSF48452 2 196 1.52E-60 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_08075 72907e2518e47fe18771f5a4eae14bd8 200 Gene3D G3DSA:1.25.40.10 89 200 2.2E-33 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_08075 72907e2518e47fe18771f5a4eae14bd8 200 Pfam PF06041 Bacterial protein of unknown function (DUF924) 8 197 3.8E-61 T 17-10-2018 IPR010323 Protein of unknown function DUF924 VI35_18335 76b4dcf251f6cdca3359eee8adbf2080 56 Pfam PF07235 Protein of unknown function (DUF1427) 5 43 7.5E-6 T 17-10-2018 IPR009872 Protein of unknown function DUF1427 VI35_18335 76b4dcf251f6cdca3359eee8adbf2080 56 TIGRFAM TIGR03510 XapX: XapX domain 3 50 5.0E-20 T 17-10-2018 IPR020017 XapX domain VI35_09420 8ab4b99497bd8ecfcd81d9ecbc695cfe 403 SUPERFAMILY SSF53901 212 400 2.67E-60 T 17-10-2018 IPR016039 Thiolase-like GO:0003824 VI35_09420 8ab4b99497bd8ecfcd81d9ecbc695cfe 403 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 152 168 - T 17-10-2018 IPR018201 Beta-ketoacyl synthase, active site VI35_09420 8ab4b99497bd8ecfcd81d9ecbc695cfe 403 Gene3D G3DSA:3.40.47.10 1 252 1.0E-65 T 17-10-2018 IPR016039 Thiolase-like GO:0003824 VI35_09420 8ab4b99497bd8ecfcd81d9ecbc695cfe 403 SUPERFAMILY SSF53901 1 251 3.17E-64 T 17-10-2018 IPR016039 Thiolase-like GO:0003824 VI35_09420 8ab4b99497bd8ecfcd81d9ecbc695cfe 403 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 2 244 7.6E-43 T 17-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal VI35_09420 8ab4b99497bd8ecfcd81d9ecbc695cfe 403 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 252 358 2.3E-29 T 17-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal VI35_09420 8ab4b99497bd8ecfcd81d9ecbc695cfe 403 SMART SM00825 Beta-ketoacyl synthase 4 403 1.9E-12 T 17-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain VI35_09420 8ab4b99497bd8ecfcd81d9ecbc695cfe 403 Gene3D G3DSA:3.40.47.10 258 401 1.7E-47 T 17-10-2018 IPR016039 Thiolase-like GO:0003824 VI35_21120 3eb75d0d14eba5e22576c586ef660d88 288 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 288 37.551 T 17-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21120 3eb75d0d14eba5e22576c586ef660d88 288 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 274 287 - T 17-10-2018 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21120 3eb75d0d14eba5e22576c586ef660d88 288 PRINTS PR00126 ATP synthase gamma subunit signature 235 254 6.4E-39 T 17-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21120 3eb75d0d14eba5e22576c586ef660d88 288 PRINTS PR00126 ATP synthase gamma subunit signature 166 183 6.4E-39 T 17-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21120 3eb75d0d14eba5e22576c586ef660d88 288 PRINTS PR00126 ATP synthase gamma subunit signature 266 287 6.4E-39 T 17-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21120 3eb75d0d14eba5e22576c586ef660d88 288 PRINTS PR00126 ATP synthase gamma subunit signature 73 92 6.4E-39 T 17-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21120 3eb75d0d14eba5e22576c586ef660d88 288 Pfam PF00231 ATP synthase 5 287 8.0E-101 T 17-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21120 3eb75d0d14eba5e22576c586ef660d88 288 Gene3D G3DSA:1.10.287.80 6 284 3.3E-114 T 17-10-2018 VI35_21120 3eb75d0d14eba5e22576c586ef660d88 288 Gene3D G3DSA:3.40.1380.10 61 207 3.3E-114 T 17-10-2018 VI35_21120 3eb75d0d14eba5e22576c586ef660d88 288 SUPERFAMILY SSF52943 2 288 4.84E-100 T 17-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21120 3eb75d0d14eba5e22576c586ef660d88 288 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 288 1.2E-114 T 17-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_17815 8fff66cad083b382b260bcaf1651a1a7 167 Gene3D G3DSA:3.55.40.10 30 167 3.5E-11 T 17-10-2018 VI35_17815 8fff66cad083b382b260bcaf1651a1a7 167 Pfam PF12019 Type II transport protein GspH 44 155 1.1E-18 T 17-10-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 VI35_17815 8fff66cad083b382b260bcaf1651a1a7 167 Pfam PF07963 Prokaryotic N-terminal methylation motif 3 26 2.8E-7 T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_17815 8fff66cad083b382b260bcaf1651a1a7 167 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 27 5.5E-6 T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_17815 8fff66cad083b382b260bcaf1651a1a7 167 SUPERFAMILY SSF54523 8 147 5.57E-13 T 17-10-2018 VI35_17940 9b8e4bb5a4f77b8d532f8f81389af4c7 249 SUPERFAMILY SSF75217 1 244 4.45E-102 T 17-10-2018 IPR029028 Alpha/beta knot methyltransferases VI35_17940 9b8e4bb5a4f77b8d532f8f81389af4c7 249 PIRSF PIRSF000386 1 247 2.3E-102 T 17-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 VI35_17940 9b8e4bb5a4f77b8d532f8f81389af4c7 249 Gene3D G3DSA:3.40.1280.10 1 160 4.4E-69 T 17-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VI35_17940 9b8e4bb5a4f77b8d532f8f81389af4c7 249 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 249 119.496 T 17-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 VI35_17940 9b8e4bb5a4f77b8d532f8f81389af4c7 249 Gene3D G3DSA:1.10.1270.20 161 249 3.6E-33 T 17-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 VI35_17940 9b8e4bb5a4f77b8d532f8f81389af4c7 249 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 233 3.6E-109 T 17-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 VI35_17940 9b8e4bb5a4f77b8d532f8f81389af4c7 249 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 221 6.6E-69 T 17-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 VI35_14705 eaa68b724ed172a5cc95b9d8e1590ed2 85 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 81 9.6E-29 T 17-10-2018 IPR000032 Phosphocarrier protein HPr-like VI35_14705 eaa68b724ed172a5cc95b9d8e1590ed2 85 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 17-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site VI35_14705 eaa68b724ed172a5cc95b9d8e1590ed2 85 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 17-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site VI35_14705 eaa68b724ed172a5cc95b9d8e1590ed2 85 PRINTS PR00107 Phosphocarrier protein signature 13 29 4.3E-19 T 17-10-2018 IPR000032 Phosphocarrier protein HPr-like VI35_14705 eaa68b724ed172a5cc95b9d8e1590ed2 85 PRINTS PR00107 Phosphocarrier protein signature 53 70 4.3E-19 T 17-10-2018 IPR000032 Phosphocarrier protein HPr-like VI35_14705 eaa68b724ed172a5cc95b9d8e1590ed2 85 PRINTS PR00107 Phosphocarrier protein signature 38 53 4.3E-19 T 17-10-2018 IPR000032 Phosphocarrier protein HPr-like VI35_14705 eaa68b724ed172a5cc95b9d8e1590ed2 85 Pfam PF00381 PTS HPr component phosphorylation site 3 82 2.9E-28 T 17-10-2018 IPR000032 Phosphocarrier protein HPr-like VI35_14705 eaa68b724ed172a5cc95b9d8e1590ed2 85 Gene3D G3DSA:3.30.1340.10 1 85 5.3E-33 T 17-10-2018 IPR035895 HPr-like superfamily VI35_14705 eaa68b724ed172a5cc95b9d8e1590ed2 85 SUPERFAMILY SSF55594 1 82 1.57E-26 T 17-10-2018 IPR035895 HPr-like superfamily VI35_09615 6a311492612d722ba9caa2974a1ee719 371 SUPERFAMILY SSF51735 137 303 4.97E-47 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_09615 6a311492612d722ba9caa2974a1ee719 371 PIRSF PIRSF000183 1 371 1.2E-148 T 17-10-2018 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 VI35_09615 6a311492612d722ba9caa2974a1ee719 371 Gene3D G3DSA:3.40.50.720 3 353 1.6E-133 T 17-10-2018 VI35_09615 6a311492612d722ba9caa2974a1ee719 371 Gene3D G3DSA:3.40.50.720 130 305 1.6E-133 T 17-10-2018 VI35_09615 6a311492612d722ba9caa2974a1ee719 371 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 141 352 7.9E-81 T 17-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain VI35_09615 6a311492612d722ba9caa2974a1ee719 371 SUPERFAMILY SSF52283 1 358 2.13E-64 T 17-10-2018 VI35_09615 6a311492612d722ba9caa2974a1ee719 371 SMART SM01003 4 137 4.1E-78 T 17-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal VI35_09615 6a311492612d722ba9caa2974a1ee719 371 SMART SM01002 149 297 2.3E-84 T 17-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain VI35_09615 6a311492612d722ba9caa2974a1ee719 371 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 137 7.2E-46 T 17-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal VI35_09615 6a311492612d722ba9caa2974a1ee719 371 TIGRFAM TIGR00518 alaDH: alanine dehydrogenase 1 368 3.7E-153 T 17-10-2018 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 VI35_10375 4a3d9f7e03c20cc8dd7f28ff566d11b8 413 PIRSF PIRSF003180 1 403 4.3E-138 T 17-10-2018 IPR014408 Signal transduction c-di-GMP phosphodiesterase, EAL/HD-GYP domain-containing VI35_10375 4a3d9f7e03c20cc8dd7f28ff566d11b8 413 SUPERFAMILY SSF109604 181 398 6.91E-39 T 17-10-2018 VI35_10375 4a3d9f7e03c20cc8dd7f28ff566d11b8 413 Gene3D G3DSA:1.10.3210.10 194 382 3.2E-21 T 17-10-2018 VI35_10375 4a3d9f7e03c20cc8dd7f28ff566d11b8 413 SMART SM00052 1 195 2.3E-4 T 17-10-2018 IPR001633 EAL domain VI35_10375 4a3d9f7e03c20cc8dd7f28ff566d11b8 413 Pfam PF08668 HDOD domain 198 319 4.5E-12 T 17-10-2018 IPR013976 Metal-dependent hydrolase HDOD VI35_10375 4a3d9f7e03c20cc8dd7f28ff566d11b8 413 Pfam PF00563 EAL domain 39 190 7.9E-13 T 17-10-2018 IPR001633 EAL domain VI35_10375 4a3d9f7e03c20cc8dd7f28ff566d11b8 413 Gene3D G3DSA:3.20.20.450 4 193 2.9E-17 T 17-10-2018 IPR035919 EAL domain superfamily VI35_10375 4a3d9f7e03c20cc8dd7f28ff566d11b8 413 SUPERFAMILY SSF141868 4 196 5.1E-28 T 17-10-2018 IPR035919 EAL domain superfamily VI35_06560 60de4d13bab90cd72638a0b051071b1c 174 PIRSF PIRSF038996 1 172 1.8E-65 T 17-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 VI35_06560 60de4d13bab90cd72638a0b051071b1c 174 SUPERFAMILY SSF52218 4 169 4.34E-52 T 17-10-2018 IPR029039 Flavoprotein-like superfamily VI35_06560 60de4d13bab90cd72638a0b051071b1c 174 ProSitePatterns PS00201 Flavodoxin signature. 6 22 - T 17-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 VI35_06560 60de4d13bab90cd72638a0b051071b1c 174 Pfam PF00258 Flavodoxin 6 160 2.0E-29 T 17-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 VI35_06560 60de4d13bab90cd72638a0b051071b1c 174 Gene3D G3DSA:3.40.50.360 3 173 6.4E-54 T 17-10-2018 IPR029039 Flavoprotein-like superfamily VI35_06560 60de4d13bab90cd72638a0b051071b1c 174 TIGRFAM TIGR01752 flav_long: flavodoxin 4 168 7.1E-69 T 17-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 VI35_06700 7ed5fb32ec057c3a4828c3a3b0e4d01b 132 Gene3D G3DSA:3.10.129.10 1 132 3.0E-41 T 17-10-2018 VI35_06700 7ed5fb32ec057c3a4828c3a3b0e4d01b 132 Pfam PF03061 Thioesterase superfamily 27 98 6.2E-19 T 17-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 VI35_06700 7ed5fb32ec057c3a4828c3a3b0e4d01b 132 SUPERFAMILY SSF54637 8 131 2.14E-39 T 17-10-2018 IPR029069 HotDog domain superfamily VI35_00595 a4e8b5681033d86ab3712cff71721a9c 85 Gene3D G3DSA:3.30.70.260 1 85 2.7E-12 T 17-10-2018 VI35_00595 a4e8b5681033d86ab3712cff71721a9c 85 Pfam PF13710 ACT domain 16 74 1.3E-22 T 17-10-2018 VI35_00595 a4e8b5681033d86ab3712cff71721a9c 85 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 6 74 1.0E-4 T 17-10-2018 VI35_00595 a4e8b5681033d86ab3712cff71721a9c 85 SUPERFAMILY SSF55021 8 75 3.08E-10 T 17-10-2018 VI35_13530 7701704e25130dd35b235274c6b274a2 247 Gene3D G3DSA:1.10.8.60 181 247 4.1E-26 T 17-10-2018 VI35_13530 7701704e25130dd35b235274c6b274a2 247 TIGRFAM TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda 20 246 2.9E-87 T 17-10-2018 IPR017788 DnaA regulatory inactivator Hda GO:0032297 VI35_13530 7701704e25130dd35b235274c6b274a2 247 Gene3D G3DSA:3.40.50.300 9 177 7.2E-34 T 17-10-2018 VI35_13530 7701704e25130dd35b235274c6b274a2 247 Pfam PF00308 Bacterial dnaA protein 32 226 6.2E-14 T 17-10-2018 IPR013317 Chromosomal replication initiator protein DnaA VI35_13530 7701704e25130dd35b235274c6b274a2 247 SUPERFAMILY SSF52540 36 226 1.48E-22 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_20385 c26f47889b6cae22c48ca481588046a5 321 SUPERFAMILY SSF53822 74 314 1.75E-45 T 17-10-2018 IPR028082 Periplasmic binding protein-like I VI35_20385 c26f47889b6cae22c48ca481588046a5 321 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 5.4E-6 T 17-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VI35_20385 c26f47889b6cae22c48ca481588046a5 321 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 5.4E-6 T 17-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VI35_20385 c26f47889b6cae22c48ca481588046a5 321 Gene3D G3DSA:1.10.260.40 1 47 1.5E-17 T 17-10-2018 VI35_20385 c26f47889b6cae22c48ca481588046a5 321 SUPERFAMILY SSF47413 3 53 1.97E-12 T 17-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VI35_20385 c26f47889b6cae22c48ca481588046a5 321 SMART SM00354 1 74 1.0E-14 T 17-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VI35_20385 c26f47889b6cae22c48ca481588046a5 321 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 17-10-2018 VI35_20385 c26f47889b6cae22c48ca481588046a5 321 Gene3D G3DSA:3.40.50.2300 156 280 1.4E-46 T 17-10-2018 VI35_20385 c26f47889b6cae22c48ca481588046a5 321 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 49 1.7E-16 T 17-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VI35_20385 c26f47889b6cae22c48ca481588046a5 321 Gene3D G3DSA:3.40.50.2300 75 312 1.4E-46 T 17-10-2018 VI35_20385 c26f47889b6cae22c48ca481588046a5 321 Pfam PF13377 Periplasmic binding protein-like domain 163 320 1.2E-35 T 17-10-2018 VI35_04630 758f796d7e3d6b34ba39fe3a61c3d9e0 185 Pfam PF00293 NUDIX domain 33 154 2.3E-12 T 17-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 VI35_04630 758f796d7e3d6b34ba39fe3a61c3d9e0 185 Gene3D G3DSA:3.90.79.10 20 158 3.5E-23 T 17-10-2018 VI35_04630 758f796d7e3d6b34ba39fe3a61c3d9e0 185 ProSitePatterns PS00893 Nudix box signature. 62 83 - T 17-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 VI35_04630 758f796d7e3d6b34ba39fe3a61c3d9e0 185 SUPERFAMILY SSF55811 32 154 2.03E-20 T 17-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VI35_16545 8809e0389fab300cda76a510af066a8f 400 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 332 9.9E-146 T 17-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 VI35_16545 8809e0389fab300cda76a510af066a8f 400 PIRSF PIRSF002401 1 376 3.7E-139 T 17-10-2018 IPR035101 GTP-binding protein, Obg-type VI35_16545 8809e0389fab300cda76a510af066a8f 400 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 1.4E-34 T 17-10-2018 IPR006073 GTP binding domain GO:0005525 VI35_16545 8809e0389fab300cda76a510af066a8f 400 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 1.4E-34 T 17-10-2018 IPR006073 GTP binding domain GO:0005525 VI35_16545 8809e0389fab300cda76a510af066a8f 400 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 1.4E-34 T 17-10-2018 IPR006073 GTP binding domain GO:0005525 VI35_16545 8809e0389fab300cda76a510af066a8f 400 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 1.4E-34 T 17-10-2018 IPR006073 GTP binding domain GO:0005525 VI35_16545 8809e0389fab300cda76a510af066a8f 400 SUPERFAMILY SSF82051 2 157 2.88E-57 T 17-10-2018 IPR036726 GTP1/OBG domain superfamily VI35_16545 8809e0389fab300cda76a510af066a8f 400 SUPERFAMILY SSF52540 152 337 8.89E-48 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_16545 8809e0389fab300cda76a510af066a8f 400 Gene3D G3DSA:2.70.210.12 1 158 3.1E-62 T 17-10-2018 IPR036726 GTP1/OBG domain superfamily VI35_16545 8809e0389fab300cda76a510af066a8f 400 Gene3D G3DSA:3.40.50.300 159 336 4.0E-51 T 17-10-2018 VI35_16545 8809e0389fab300cda76a510af066a8f 400 Pfam PF01018 GTP1/OBG 4 156 7.4E-59 T 17-10-2018 IPR006169 GTP1/OBG domain VI35_16545 8809e0389fab300cda76a510af066a8f 400 Pfam PF01926 50S ribosome-binding GTPase 161 284 4.0E-24 T 17-10-2018 IPR006073 GTP binding domain GO:0005525 VI35_16545 8809e0389fab300cda76a510af066a8f 400 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 17-10-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 VI35_16545 8809e0389fab300cda76a510af066a8f 400 Hamap MF_01454 GTPase Obg [obg]. 2 333 48.116 T 17-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 VI35_08045 1dca41dad0b3ccadddacc0b948f46ec4 287 SUPERFAMILY SSF56112 29 270 5.25E-25 T 17-10-2018 IPR011009 Protein kinase-like domain superfamily VI35_08045 1dca41dad0b3ccadddacc0b948f46ec4 287 Pfam PF01636 Phosphotransferase enzyme family 30 226 1.8E-13 T 17-10-2018 IPR002575 Aminoglycoside phosphotransferase VI35_08045 1dca41dad0b3ccadddacc0b948f46ec4 287 Gene3D G3DSA:3.90.1200.10 114 287 4.7E-15 T 17-10-2018 VI35_02820 c15ac230fc5b8eb09a6aa55668b158a8 295 Pfam PF01430 Hsp33 protein 6 275 6.4E-84 T 17-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 VI35_02820 c15ac230fc5b8eb09a6aa55668b158a8 295 Hamap MF_00117 33 kDa chaperonin [hslO]. 5 286 31.504 T 17-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 VI35_02820 c15ac230fc5b8eb09a6aa55668b158a8 295 Gene3D G3DSA:3.90.1280.10 228 286 9.8E-20 T 17-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 VI35_02820 c15ac230fc5b8eb09a6aa55668b158a8 295 Gene3D G3DSA:3.55.30.10 1 177 6.1E-64 T 17-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 VI35_02820 c15ac230fc5b8eb09a6aa55668b158a8 295 SUPERFAMILY SSF64397 6 234 4.84E-76 T 17-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 VI35_02820 c15ac230fc5b8eb09a6aa55668b158a8 295 SUPERFAMILY SSF118352 227 284 2.75E-17 T 17-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 VI35_02820 c15ac230fc5b8eb09a6aa55668b158a8 295 PIRSF PIRSF005261 1 286 1.8E-70 T 17-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 VI35_02820 c15ac230fc5b8eb09a6aa55668b158a8 295 Gene3D G3DSA:1.10.287.480 179 227 9.5E-23 T 17-10-2018 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily VI35_11115 4c36025369c717ac4e54c6855cf4e9a7 65 Gene3D G3DSA:2.40.50.530 1 65 8.4E-23 T 17-10-2018 VI35_11115 4c36025369c717ac4e54c6855cf4e9a7 65 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 17.71 T 17-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 VI35_11115 4c36025369c717ac4e54c6855cf4e9a7 65 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 64 4.0E-26 T 17-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 VI35_11115 4c36025369c717ac4e54c6855cf4e9a7 65 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 17-10-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_11115 4c36025369c717ac4e54c6855cf4e9a7 65 SUPERFAMILY SSF143034 2 64 4.58E-23 T 17-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_11115 4c36025369c717ac4e54c6855cf4e9a7 65 PRINTS PR00064 Ribosomal protein L35 signature 21 35 1.6E-19 T 17-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 VI35_11115 4c36025369c717ac4e54c6855cf4e9a7 65 PRINTS PR00064 Ribosomal protein L35 signature 36 54 1.6E-19 T 17-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 VI35_11115 4c36025369c717ac4e54c6855cf4e9a7 65 PRINTS PR00064 Ribosomal protein L35 signature 3 20 1.6E-19 T 17-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 VI35_11115 4c36025369c717ac4e54c6855cf4e9a7 65 Pfam PF01632 Ribosomal protein L35 2 61 5.3E-23 T 17-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_13625 0cfe73439145c68f65598630fd22265d 223 Hamap MF_00415 Flagellar L-ring protein [flgH]. 1 220 26.561 T 17-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 VI35_13625 0cfe73439145c68f65598630fd22265d 223 PRINTS PR01008 Flagellar L-ring protein signature 199 213 1.4E-23 T 17-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 VI35_13625 0cfe73439145c68f65598630fd22265d 223 PRINTS PR01008 Flagellar L-ring protein signature 64 76 1.4E-23 T 17-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 VI35_13625 0cfe73439145c68f65598630fd22265d 223 PRINTS PR01008 Flagellar L-ring protein signature 183 197 1.4E-23 T 17-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 VI35_13625 0cfe73439145c68f65598630fd22265d 223 PRINTS PR01008 Flagellar L-ring protein signature 162 178 1.4E-23 T 17-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 VI35_13625 0cfe73439145c68f65598630fd22265d 223 PRINTS PR01008 Flagellar L-ring protein signature 136 151 1.4E-23 T 17-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 VI35_13625 0cfe73439145c68f65598630fd22265d 223 Pfam PF02107 Flagellar L-ring protein 43 222 8.3E-61 T 17-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 VI35_17805 adcd5e5c60b440160f5b55427de7ecc6 112 SUPERFAMILY SSF54913 1 112 6.35E-47 T 17-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta VI35_17805 adcd5e5c60b440160f5b55427de7ecc6 112 PIRSF PIRSF039144 1 112 1.4E-57 T 17-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VI35_17805 adcd5e5c60b440160f5b55427de7ecc6 112 SMART SM00938 4 105 1.5E-69 T 17-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VI35_17805 adcd5e5c60b440160f5b55427de7ecc6 112 PRINTS PR00340 P-II protein signature 23 41 3.7E-44 T 17-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VI35_17805 adcd5e5c60b440160f5b55427de7ecc6 112 PRINTS PR00340 P-II protein signature 83 103 3.7E-44 T 17-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VI35_17805 adcd5e5c60b440160f5b55427de7ecc6 112 PRINTS PR00340 P-II protein signature 2 17 3.7E-44 T 17-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VI35_17805 adcd5e5c60b440160f5b55427de7ecc6 112 PRINTS PR00340 P-II protein signature 52 75 3.7E-44 T 17-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VI35_17805 adcd5e5c60b440160f5b55427de7ecc6 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 17-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 VI35_17805 adcd5e5c60b440160f5b55427de7ecc6 112 Gene3D G3DSA:3.30.70.120 1 112 1.6E-49 T 17-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal VI35_17805 adcd5e5c60b440160f5b55427de7ecc6 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 17-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 VI35_17805 adcd5e5c60b440160f5b55427de7ecc6 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 4.3E-45 T 17-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VI35_18975 79e2ac5c8250059efde04ecfcd6e6be1 157 Pfam PF13673 Acetyltransferase (GNAT) domain 40 128 1.2E-9 T 17-10-2018 IPR000182 GNAT domain VI35_18975 79e2ac5c8250059efde04ecfcd6e6be1 157 Gene3D G3DSA:3.40.630.30 1 153 1.7E-26 T 17-10-2018 VI35_18975 79e2ac5c8250059efde04ecfcd6e6be1 157 SUPERFAMILY SSF55729 3 145 3.72E-23 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_03770 26f311c75f02da3c3812bba407368860 98 PRINTS PR01591 DNA-binding protein FIS signature 42 57 8.3E-24 T 17-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 VI35_03770 26f311c75f02da3c3812bba407368860 98 PRINTS PR01591 DNA-binding protein FIS signature 9 26 8.3E-24 T 17-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 VI35_03770 26f311c75f02da3c3812bba407368860 98 PRINTS PR01591 DNA-binding protein FIS signature 26 42 8.3E-24 T 17-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 VI35_03770 26f311c75f02da3c3812bba407368860 98 PRINTS PR01591 DNA-binding protein FIS signature 57 69 8.3E-24 T 17-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 VI35_03770 26f311c75f02da3c3812bba407368860 98 Gene3D G3DSA:1.10.10.60 1 98 1.4E-30 T 17-10-2018 VI35_03770 26f311c75f02da3c3812bba407368860 98 Hamap MF_00166 DNA-binding protein Fis [fis]. 1 98 28.99 T 17-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 VI35_03770 26f311c75f02da3c3812bba407368860 98 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 61 78 8.3E-12 T 17-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VI35_03770 26f311c75f02da3c3812bba407368860 98 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 78 98 8.3E-12 T 17-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VI35_03770 26f311c75f02da3c3812bba407368860 98 PIRSF PIRSF002097 1 98 3.1E-42 T 17-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 VI35_03770 26f311c75f02da3c3812bba407368860 98 SUPERFAMILY SSF46689 6 98 2.72E-25 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_03770 26f311c75f02da3c3812bba407368860 98 Pfam PF02954 Bacterial regulatory protein, Fis family 55 95 3.4E-13 T 17-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VI35_11525 ce906db82ce6e0b1e829cf5ad9841ef1 595 TIGRFAM TIGR01838 PHA_synth_I: poly(R)-hydroxyalkanoic acid synthase, class I 51 578 2.7E-249 T 17-10-2018 IPR010963 Poly(R)-hydroxyalkanoic acid synthase, class I GO:0005737|GO:0016746|GO:0042619 VI35_11525 ce906db82ce6e0b1e829cf5ad9841ef1 595 Pfam PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus 93 265 3.1E-73 T 17-10-2018 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 VI35_11525 ce906db82ce6e0b1e829cf5ad9841ef1 595 SUPERFAMILY SSF53474 224 513 7.2E-38 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_11525 ce906db82ce6e0b1e829cf5ad9841ef1 595 Gene3D G3DSA:3.40.50.1820 226 516 4.1E-12 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_09380 ddf05d716b4aba13ca830caa4ba48ef2 84 Pfam PF06183 DinI-like family 14 76 4.8E-24 T 17-10-2018 IPR010391 DNA damage-inducible protein DinI-like VI35_09380 ddf05d716b4aba13ca830caa4ba48ef2 84 Gene3D G3DSA:3.30.910.10 1 79 1.0E-26 T 17-10-2018 IPR036687 DinI-like superfamily VI35_09380 ddf05d716b4aba13ca830caa4ba48ef2 84 SUPERFAMILY SSF54857 1 77 1.7E-23 T 17-10-2018 IPR036687 DinI-like superfamily VI35_18870 e7a6d25d838f55f9bc563c1d562f280b 254 Pfam PF12697 Alpha/beta hydrolase family 9 239 7.7E-18 T 17-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VI35_18870 e7a6d25d838f55f9bc563c1d562f280b 254 Hamap MF_01660 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [menH]. 2 246 30.358 T 17-10-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 VI35_18870 e7a6d25d838f55f9bc563c1d562f280b 254 TIGRFAM TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 8 244 3.3E-72 T 17-10-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 VI35_18870 e7a6d25d838f55f9bc563c1d562f280b 254 Gene3D G3DSA:3.40.50.1820 3 244 4.7E-55 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_18870 e7a6d25d838f55f9bc563c1d562f280b 254 SUPERFAMILY SSF53474 6 246 2.91E-40 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_18005 873b5e109f5b54abaa191f53fa334568 245 Gene3D G3DSA:3.40.190.10 25 242 1.8E-77 T 17-10-2018 VI35_18005 873b5e109f5b54abaa191f53fa334568 245 SMART SM00062 22 244 1.9E-77 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_18005 873b5e109f5b54abaa191f53fa334568 245 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 45 58 - T 17-10-2018 IPR018313 Solute-binding protein family 3, conserved site VI35_18005 873b5e109f5b54abaa191f53fa334568 245 Gene3D G3DSA:3.40.190.10 108 203 1.8E-77 T 17-10-2018 VI35_18005 873b5e109f5b54abaa191f53fa334568 245 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 23 244 1.6E-66 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_18005 873b5e109f5b54abaa191f53fa334568 245 SUPERFAMILY SSF53850 1 244 2.26E-67 T 17-10-2018 VI35_18005 873b5e109f5b54abaa191f53fa334568 245 SMART SM00079 22 245 0.0027 T 17-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 VI35_08180 f44de911184cb51ae5851c784d187e8e 214 Pfam PF02589 LUD domain 108 211 4.9E-26 T 17-10-2018 IPR003741 LUD domain VI35_08180 f44de911184cb51ae5851c784d187e8e 214 SUPERFAMILY SSF100950 35 212 7.95E-39 T 17-10-2018 IPR037171 NagB/RpiA transferase-like VI35_08180 f44de911184cb51ae5851c784d187e8e 214 Gene3D G3DSA:3.40.50.10420 31 211 7.5E-40 T 17-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily VI35_04645 e845732df7f2609b74ab3bc73d8350b3 182 Gene3D G3DSA:3.40.109.10 1 180 2.1E-39 T 17-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 VI35_04645 e845732df7f2609b74ab3bc73d8350b3 182 Pfam PF00881 Nitroreductase family 8 161 3.6E-23 T 17-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 VI35_04645 e845732df7f2609b74ab3bc73d8350b3 182 PIRSF PIRSF000232 1 182 1.4E-61 T 17-10-2018 IPR026021 Putative NAD(P)H nitroreductase YdjA-like VI35_04645 e845732df7f2609b74ab3bc73d8350b3 182 SUPERFAMILY SSF55469 1 180 8.51E-39 T 17-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 VI35_05010 4938591657412895262710913a264daf 199 TIGRFAM TIGR01940 nqrE: NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit 4 197 3.4E-92 T 17-10-2018 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 VI35_05010 4938591657412895262710913a264daf 199 Hamap MF_00429 Na(+)-translocating NADH-quinone reductase subunit E [nqrE]. 1 199 27.463 T 17-10-2018 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 VI35_05010 4938591657412895262710913a264daf 199 Pfam PF02508 Rnf-Nqr subunit, membrane protein 4 197 1.2E-54 T 17-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 VI35_05010 4938591657412895262710913a264daf 199 PIRSF PIRSF006102 1 199 1.1E-58 T 17-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 VI35_21075 06b0cbcfac14c607971939619e7fa98e 610 SUPERFAMILY SSF53697 245 610 8.91E-112 T 17-10-2018 VI35_21075 06b0cbcfac14c607971939619e7fa98e 610 Gene3D G3DSA:3.40.50.10490 249 609 1.5E-147 T 17-10-2018 VI35_21075 06b0cbcfac14c607971939619e7fa98e 610 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 610 40.627 T 17-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 VI35_21075 06b0cbcfac14c607971939619e7fa98e 610 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 610 1.8E-261 T 17-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 VI35_21075 06b0cbcfac14c607971939619e7fa98e 610 Gene3D G3DSA:3.40.50.10490 448 595 1.5E-147 T 17-10-2018 VI35_21075 06b0cbcfac14c607971939619e7fa98e 610 Pfam PF01380 SIS domain 463 592 6.0E-26 T 17-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 VI35_21075 06b0cbcfac14c607971939619e7fa98e 610 Pfam PF01380 SIS domain 292 418 1.5E-33 T 17-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 VI35_21075 06b0cbcfac14c607971939619e7fa98e 610 Pfam PF13522 Glutamine amidotransferase domain 63 182 7.3E-23 T 17-10-2018 VI35_21075 06b0cbcfac14c607971939619e7fa98e 610 Gene3D G3DSA:3.60.20.10 2 241 1.1E-81 T 17-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VI35_21075 06b0cbcfac14c607971939619e7fa98e 610 SUPERFAMILY SSF56235 2 232 8.23E-76 T 17-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VI35_13370 1e18ee1a9a373d7a0cbc129b133a1019 501 SUPERFAMILY SSF52540 11 382 2.2E-53 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_13370 1e18ee1a9a373d7a0cbc129b133a1019 501 Gene3D G3DSA:3.40.50.300 6 138 9.0E-9 T 17-10-2018 VI35_13370 1e18ee1a9a373d7a0cbc129b133a1019 501 Pfam PF05872 Bacterial protein of unknown function (DUF853) 7 499 1.7E-229 T 17-10-2018 IPR033186 Helicase HerA-like C-terminal VI35_13370 1e18ee1a9a373d7a0cbc129b133a1019 501 Gene3D G3DSA:3.40.50.300 200 376 4.7E-20 T 17-10-2018 VI35_01090 e6f0bc21194cad5decaa0ca8667ded81 494 Pfam PF02233 NAD(P) transhydrogenase beta subunit 7 492 4.2E-201 T 17-10-2018 IPR034300 NADP transhydrogenase beta-like domain KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 VI35_01090 e6f0bc21194cad5decaa0ca8667ded81 494 Gene3D G3DSA:3.40.50.1220 318 494 2.3E-88 T 17-10-2018 VI35_01090 e6f0bc21194cad5decaa0ca8667ded81 494 SUPERFAMILY SSF52467 321 494 2.62E-79 T 17-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily VI35_01090 e6f0bc21194cad5decaa0ca8667ded81 494 PIRSF PIRSF000204 1 494 1.9E-231 T 17-10-2018 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 VI35_19350 b5c28ac17281d2ce8b1d1f909f76ce15 224 Gene3D G3DSA:3.40.50.620 1 146 4.4E-28 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_19350 b5c28ac17281d2ce8b1d1f909f76ce15 224 Pfam PF01902 Diphthamide synthase 5 204 2.4E-26 T 17-10-2018 IPR002761 Diphthamide synthase domain MetaCyc: PWY-6482|MetaCyc: PWY-7546|Reactome: R-HSA-5358493 VI35_19350 b5c28ac17281d2ce8b1d1f909f76ce15 224 SUPERFAMILY SSF52402 1 221 1.06E-61 T 17-10-2018 VI35_19350 b5c28ac17281d2ce8b1d1f909f76ce15 224 Gene3D G3DSA:3.90.1490.10 165 220 1.9E-5 T 17-10-2018 VI35_19640 9529078d84fdf3bc383c501fa38c3094 300 Gene3D G3DSA:1.10.10.10 1 89 3.8E-28 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_19640 9529078d84fdf3bc383c501fa38c3094 300 SUPERFAMILY SSF53850 87 292 1.99E-46 T 17-10-2018 VI35_19640 9529078d84fdf3bc383c501fa38c3094 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 8.8E-6 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_19640 9529078d84fdf3bc383c501fa38c3094 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 8.8E-6 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_19640 9529078d84fdf3bc383c501fa38c3094 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 8.8E-6 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_19640 9529078d84fdf3bc383c501fa38c3094 300 Gene3D G3DSA:3.40.190.290 90 290 8.4E-66 T 17-10-2018 VI35_19640 9529078d84fdf3bc383c501fa38c3094 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 62 4.0E-20 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_19640 9529078d84fdf3bc383c501fa38c3094 300 SUPERFAMILY SSF46785 1 86 7.1E-22 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_19640 9529078d84fdf3bc383c501fa38c3094 300 Pfam PF03466 LysR substrate binding domain 87 289 9.0E-45 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_00190 b9d5d2a5822beb21ece38e96d45a91d3 268 SUPERFAMILY SSF55785 10 102 8.86E-11 T 17-10-2018 IPR035965 PAS domain superfamily VI35_00190 b9d5d2a5822beb21ece38e96d45a91d3 268 Gene3D G3DSA:3.30.70.270 104 267 2.6E-27 T 17-10-2018 VI35_00190 b9d5d2a5822beb21ece38e96d45a91d3 268 Pfam PF08447 PAS fold 24 101 1.7E-12 T 17-10-2018 IPR013655 PAS fold-3 GO:0005515 VI35_00190 b9d5d2a5822beb21ece38e96d45a91d3 268 SUPERFAMILY SSF55073 121 264 6.91E-21 T 17-10-2018 IPR029787 Nucleotide cyclase VI35_00190 b9d5d2a5822beb21ece38e96d45a91d3 268 Pfam PF00990 Diguanylate cyclase, GGDEF domain 118 263 3.4E-19 T 17-10-2018 IPR000160 GGDEF domain VI35_00190 b9d5d2a5822beb21ece38e96d45a91d3 268 Gene3D G3DSA:3.30.450.20 1 103 5.8E-16 T 17-10-2018 VI35_00190 b9d5d2a5822beb21ece38e96d45a91d3 268 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 10 102 9.0E-6 T 17-10-2018 IPR000014 PAS domain VI35_00190 b9d5d2a5822beb21ece38e96d45a91d3 268 SMART SM00267 105 268 7.3E-14 T 17-10-2018 IPR000160 GGDEF domain VI35_00190 b9d5d2a5822beb21ece38e96d45a91d3 268 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 113 261 3.0E-17 T 17-10-2018 IPR000160 GGDEF domain VI35_14535 98ee7121458ec4476de5510db47044ca 457 SUPERFAMILY SSF109604 270 438 7.25E-35 T 17-10-2018 VI35_14535 98ee7121458ec4476de5510db47044ca 457 SMART SM00471 275 410 3.4E-9 T 17-10-2018 IPR003607 HD/PDEase domain VI35_14535 98ee7121458ec4476de5510db47044ca 457 Gene3D G3DSA:1.10.3210.10 7 233 8.2E-26 T 17-10-2018 VI35_14535 98ee7121458ec4476de5510db47044ca 457 Gene3D G3DSA:1.10.3210.10 257 446 7.1E-60 T 17-10-2018 VI35_14535 98ee7121458ec4476de5510db47044ca 457 Pfam PF13487 HD domain 330 392 1.6E-18 T 17-10-2018 VI35_14535 98ee7121458ec4476de5510db47044ca 457 Pfam PF13487 HD domain 137 184 5.8E-10 T 17-10-2018 VI35_14535 98ee7121458ec4476de5510db47044ca 457 SUPERFAMILY SSF109604 14 228 2.15E-13 T 17-10-2018 VI35_10980 d677e3f808fcd72ceebdc8037641c63c 329 Pfam PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP 38 83 3.0E-19 T 17-10-2018 IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal VI35_10980 d677e3f808fcd72ceebdc8037641c63c 329 Gene3D G3DSA:1.10.760.10 211 297 1.5E-72 T 17-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VI35_10980 d677e3f808fcd72ceebdc8037641c63c 329 PIRSF PIRSF000006 1 324 1.8E-101 T 17-10-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III VI35_10980 d677e3f808fcd72ceebdc8037641c63c 329 TIGRFAM TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III 116 323 1.8E-59 T 17-10-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III VI35_10980 d677e3f808fcd72ceebdc8037641c63c 329 SUPERFAMILY SSF46626 243 327 1.24E-22 T 17-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VI35_10980 d677e3f808fcd72ceebdc8037641c63c 329 PRINTS PR00605 Class IC cytochrome C signature 295 317 4.7E-5 T 17-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 VI35_10980 d677e3f808fcd72ceebdc8037641c63c 329 PRINTS PR00605 Class IC cytochrome C signature 166 177 4.7E-5 T 17-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 VI35_10980 d677e3f808fcd72ceebdc8037641c63c 329 SUPERFAMILY SSF46626 55 237 7.16E-28 T 17-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VI35_10980 d677e3f808fcd72ceebdc8037641c63c 329 Gene3D G3DSA:1.10.760.10 144 320 1.5E-72 T 17-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VI35_10980 d677e3f808fcd72ceebdc8037641c63c 329 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 243 317 4.3E-10 T 17-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_10980 d677e3f808fcd72ceebdc8037641c63c 329 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 156 230 2.1E-12 T 17-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_10980 d677e3f808fcd72ceebdc8037641c63c 329 Gene3D G3DSA:1.20.58.1490 1 93 1.8E-28 T 17-10-2018 IPR038414 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal domain superfamily VI35_09875 326201a36701963d09f8471ce51ac877 411 Pfam PF12704 MacB-like periplasmic core domain 31 243 6.8E-16 T 17-10-2018 IPR025857 MacB-like periplasmic core domain VI35_09875 326201a36701963d09f8471ce51ac877 411 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 8 411 5.2E-132 T 17-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 VI35_09875 326201a36701963d09f8471ce51ac877 411 Pfam PF02687 FtsX-like permease family 304 404 6.7E-8 T 17-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 VI35_17360 df701eed25ab1ebb6df1780949a47648 38 TIGRFAM TIGR02106 cyd_oper_ybgT: cyd operon protein YbgT 1 29 8.8E-20 T 17-10-2018 IPR011724 Cyd operon protein YbgT MetaCyc: PWY-7545 VI35_17360 df701eed25ab1ebb6df1780949a47648 38 Pfam PF08173 Membrane bound YbgT-like protein 1 26 5.7E-17 T 17-10-2018 IPR012994 Membrane bound YbgT-like VI35_00095 189cf7b0206491fd5d54503a0989b392 449 SUPERFAMILY SSF55424 335 449 2.58E-33 T 17-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 VI35_00095 189cf7b0206491fd5d54503a0989b392 449 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 168 186 7.7E-27 T 17-10-2018 VI35_00095 189cf7b0206491fd5d54503a0989b392 449 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 253 269 7.7E-27 T 17-10-2018 VI35_00095 189cf7b0206491fd5d54503a0989b392 449 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 131 149 7.7E-27 T 17-10-2018 VI35_00095 189cf7b0206491fd5d54503a0989b392 449 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 7.7E-27 T 17-10-2018 VI35_00095 189cf7b0206491fd5d54503a0989b392 449 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 282 304 7.7E-27 T 17-10-2018 VI35_00095 189cf7b0206491fd5d54503a0989b392 449 PIRSF PIRSF000350 1 445 8.7E-84 T 17-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 VI35_00095 189cf7b0206491fd5d54503a0989b392 449 Gene3D G3DSA:3.50.50.60 143 260 6.9E-121 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_00095 189cf7b0206491fd5d54503a0989b392 449 SUPERFAMILY SSF51905 1 358 7.2E-58 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_00095 189cf7b0206491fd5d54503a0989b392 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 423 443 1.3E-65 T 17-10-2018 VI35_00095 189cf7b0206491fd5d54503a0989b392 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 134 143 1.3E-65 T 17-10-2018 VI35_00095 189cf7b0206491fd5d54503a0989b392 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 401 416 1.3E-65 T 17-10-2018 VI35_00095 189cf7b0206491fd5d54503a0989b392 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 1.3E-65 T 17-10-2018 VI35_00095 189cf7b0206491fd5d54503a0989b392 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 334 355 1.3E-65 T 17-10-2018 VI35_00095 189cf7b0206491fd5d54503a0989b392 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 254 268 1.3E-65 T 17-10-2018 VI35_00095 189cf7b0206491fd5d54503a0989b392 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 297 304 1.3E-65 T 17-10-2018 VI35_00095 189cf7b0206491fd5d54503a0989b392 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 1.3E-65 T 17-10-2018 VI35_00095 189cf7b0206491fd5d54503a0989b392 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 168 193 1.3E-65 T 17-10-2018 VI35_00095 189cf7b0206491fd5d54503a0989b392 449 Gene3D G3DSA:3.30.390.30 337 449 2.1E-46 T 17-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 VI35_00095 189cf7b0206491fd5d54503a0989b392 449 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 17-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 VI35_00095 189cf7b0206491fd5d54503a0989b392 449 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 317 2.0E-67 T 17-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VI35_00095 189cf7b0206491fd5d54503a0989b392 449 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 338 448 8.2E-33 T 17-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 VI35_00095 189cf7b0206491fd5d54503a0989b392 449 Gene3D G3DSA:3.50.50.60 5 317 6.9E-121 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_00095 189cf7b0206491fd5d54503a0989b392 449 TIGRFAM TIGR01421 gluta_reduc_1: glutathione-disulfide reductase 4 449 1.1E-212 T 17-10-2018 IPR006322 Glutathione reductase, eukaryote/bacterial GO:0004362|GO:0006749|GO:0050660|GO:0050661|GO:0055114 KEGG: 00480+1.8.1.7|MetaCyc: PWY-4081|Reactome: R-HSA-2408550|Reactome: R-HSA-3299685|Reactome: R-HSA-499943|Reactome: R-HSA-5628897 VI35_13755 33deb27934f46279c81887fab7ac10cb 328 Pfam PF02779 Transketolase, pyrimidine binding domain 4 178 1.0E-47 T 17-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain VI35_13755 33deb27934f46279c81887fab7ac10cb 328 SUPERFAMILY SSF52518 4 190 1.24E-65 T 17-10-2018 IPR029061 Thiamin diphosphate-binding fold VI35_13755 33deb27934f46279c81887fab7ac10cb 328 SMART SM00861 4 179 1.5E-64 T 17-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain VI35_13755 33deb27934f46279c81887fab7ac10cb 328 Gene3D G3DSA:3.40.50.970 1 189 3.2E-76 T 17-10-2018 VI35_13755 33deb27934f46279c81887fab7ac10cb 328 Pfam PF02780 Transketolase, C-terminal domain 199 315 2.2E-33 T 17-10-2018 IPR033248 Transketolase, C-terminal domain VI35_13755 33deb27934f46279c81887fab7ac10cb 328 Gene3D G3DSA:3.40.50.920 190 325 5.9E-42 T 17-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 VI35_13755 33deb27934f46279c81887fab7ac10cb 328 SUPERFAMILY SSF52922 191 323 1.31E-34 T 17-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 VI35_04985 b212b6713b30358e2d93700168dc6d75 234 SUPERFAMILY SSF54423 27 77 3.34E-9 T 17-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 VI35_04985 b212b6713b30358e2d93700168dc6d75 234 Pfam PF13098 Thioredoxin-like domain 111 220 3.6E-6 T 17-10-2018 IPR012336 Thioredoxin-like fold VI35_04985 b212b6713b30358e2d93700168dc6d75 234 Gene3D G3DSA:3.10.450.70 20 78 4.8E-9 T 17-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 VI35_04985 b212b6713b30358e2d93700168dc6d75 234 SUPERFAMILY SSF52833 106 223 5.89E-16 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_04985 b212b6713b30358e2d93700168dc6d75 234 Pfam PF10411 Disulfide bond isomerase protein N-terminus 26 75 7.2E-11 T 17-10-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal VI35_04985 b212b6713b30358e2d93700168dc6d75 234 Gene3D G3DSA:3.40.30.10 79 224 4.1E-16 T 17-10-2018 VI35_10115 0dced69c337822eaf706bef6eacfdf13 524 SMART SM00267 357 522 8.3E-55 T 17-10-2018 IPR000160 GGDEF domain VI35_10115 0dced69c337822eaf706bef6eacfdf13 524 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 366 521 3.8E-47 T 17-10-2018 IPR000160 GGDEF domain VI35_10115 0dced69c337822eaf706bef6eacfdf13 524 Gene3D G3DSA:3.30.70.270 361 522 1.0E-51 T 17-10-2018 VI35_10115 0dced69c337822eaf706bef6eacfdf13 524 SUPERFAMILY SSF55073 373 521 1.49E-43 T 17-10-2018 IPR029787 Nucleotide cyclase VI35_10115 0dced69c337822eaf706bef6eacfdf13 524 Pfam PF00990 Diguanylate cyclase, GGDEF domain 368 517 9.8E-42 T 17-10-2018 IPR000160 GGDEF domain VI35_10115 0dced69c337822eaf706bef6eacfdf13 524 Gene3D G3DSA:3.30.450.20 161 284 3.2E-13 T 17-10-2018 VI35_10115 0dced69c337822eaf706bef6eacfdf13 524 SUPERFAMILY SSF103190 190 269 2.28E-15 T 17-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VI35_10115 0dced69c337822eaf706bef6eacfdf13 524 Pfam PF02743 Cache domain 43 270 3.5E-24 T 17-10-2018 IPR033479 Double Cache domain 1 VI35_10115 0dced69c337822eaf706bef6eacfdf13 524 SUPERFAMILY SSF103190 78 186 9.02E-5 T 17-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VI35_01370 63f7674dd71f45af973aa04ab35a5c09 180 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 4 142 5.1E-42 T 17-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 VI35_01370 63f7674dd71f45af973aa04ab35a5c09 180 PIRSF PIRSF004682 1 177 9.2E-65 T 17-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 VI35_01370 63f7674dd71f45af973aa04ab35a5c09 180 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 5 142 7.3E-39 T 17-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 VI35_01370 63f7674dd71f45af973aa04ab35a5c09 180 SUPERFAMILY SSF56784 3 172 4.77E-49 T 17-10-2018 IPR036412 HAD-like superfamily VI35_01370 63f7674dd71f45af973aa04ab35a5c09 180 TIGRFAM TIGR00213 GmhB_yaeD: D,D-heptose 1,7-bisphosphate phosphatase 4 172 2.8E-77 T 17-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 VI35_01370 63f7674dd71f45af973aa04ab35a5c09 180 Pfam PF13242 HAD-hyrolase-like 102 170 6.5E-11 T 17-10-2018 VI35_01370 63f7674dd71f45af973aa04ab35a5c09 180 Gene3D G3DSA:3.40.50.1000 1 176 9.2E-59 T 17-10-2018 IPR023214 HAD superfamily VI35_03130 19ab069fd98bb16901be1485d2d0e810 403 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 102 116 - T 17-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 VI35_03130 19ab069fd98bb16901be1485d2d0e810 403 Gene3D G3DSA:3.40.50.1100 111 207 9.8E-108 T 17-10-2018 VI35_03130 19ab069fd98bb16901be1485d2d0e810 403 Gene3D G3DSA:3.40.50.1100 60 385 9.8E-108 T 17-10-2018 VI35_03130 19ab069fd98bb16901be1485d2d0e810 403 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 74 379 8.0E-70 T 17-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme VI35_03130 19ab069fd98bb16901be1485d2d0e810 403 SUPERFAMILY SSF53686 4 388 2.23E-89 T 17-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme VI35_16700 e9eb579873030f86d53017ecaa1a55ef 300 SUPERFAMILY SSF53850 86 295 7.96E-42 T 17-10-2018 VI35_16700 e9eb579873030f86d53017ecaa1a55ef 300 Gene3D G3DSA:3.40.190.290 90 291 3.8E-53 T 17-10-2018 VI35_16700 e9eb579873030f86d53017ecaa1a55ef 300 Gene3D G3DSA:1.10.10.10 1 88 4.9E-24 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_16700 e9eb579873030f86d53017ecaa1a55ef 300 SUPERFAMILY SSF46785 1 85 3.18E-21 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_16700 e9eb579873030f86d53017ecaa1a55ef 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 2.1E-18 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_16700 e9eb579873030f86d53017ecaa1a55ef 300 Pfam PF03466 LysR substrate binding domain 87 291 3.0E-39 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_15860 19e3c5f3ac39cadd66ce27087956b04d 341 Gene3D G3DSA:3.90.25.10 193 328 2.9E-140 T 17-10-2018 VI35_15860 19e3c5f3ac39cadd66ce27087956b04d 341 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 3 334 2.8E-141 T 17-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 VI35_15860 19e3c5f3ac39cadd66ce27087956b04d 341 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 323 1.3E-58 T 17-10-2018 IPR016040 NAD(P)-binding domain VI35_15860 19e3c5f3ac39cadd66ce27087956b04d 341 Gene3D G3DSA:3.40.50.720 3 273 2.9E-140 T 17-10-2018 VI35_15860 19e3c5f3ac39cadd66ce27087956b04d 341 SUPERFAMILY SSF51735 1 335 8.69E-96 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_02845 18167a3c33c261287316bf6ae1c60b9f 406 TIGRFAM TIGR02120 GspF: type II secretion system protein F 4 404 1.0E-165 T 17-10-2018 IPR011850 General secretion pathway protein F GO:0008565|GO:0015627|GO:0015628 VI35_02845 18167a3c33c261287316bf6ae1c60b9f 406 PRINTS PR00812 Bacterial general secretion pathway protein F signature 385 404 2.1E-41 T 17-10-2018 IPR003004 GspF/PilC family VI35_02845 18167a3c33c261287316bf6ae1c60b9f 406 PRINTS PR00812 Bacterial general secretion pathway protein F signature 166 194 2.1E-41 T 17-10-2018 IPR003004 GspF/PilC family VI35_02845 18167a3c33c261287316bf6ae1c60b9f 406 PRINTS PR00812 Bacterial general secretion pathway protein F signature 369 383 2.1E-41 T 17-10-2018 IPR003004 GspF/PilC family VI35_02845 18167a3c33c261287316bf6ae1c60b9f 406 PRINTS PR00812 Bacterial general secretion pathway protein F signature 67 79 2.1E-41 T 17-10-2018 IPR003004 GspF/PilC family VI35_02845 18167a3c33c261287316bf6ae1c60b9f 406 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 166 194 - T 17-10-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 VI35_02845 18167a3c33c261287316bf6ae1c60b9f 406 Gene3D G3DSA:1.20.81.30 56 173 2.7E-33 T 17-10-2018 VI35_02845 18167a3c33c261287316bf6ae1c60b9f 406 Pfam PF00482 Type II secretion system (T2SS), protein F 274 394 1.6E-26 T 17-10-2018 IPR018076 Type II secretion system F domain VI35_02845 18167a3c33c261287316bf6ae1c60b9f 406 Pfam PF00482 Type II secretion system (T2SS), protein F 72 194 8.3E-32 T 17-10-2018 IPR018076 Type II secretion system F domain VI35_02845 18167a3c33c261287316bf6ae1c60b9f 406 Gene3D G3DSA:1.20.81.30 257 370 4.3E-27 T 17-10-2018 VI35_15015 a79b96b50087e8e65ee7f8f38333d196 354 Gene3D G3DSA:2.40.420.20 278 346 9.2E-67 T 17-10-2018 VI35_15015 a79b96b50087e8e65ee7f8f38333d196 354 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 58 267 1.1E-28 T 17-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VI35_15015 a79b96b50087e8e65ee7f8f38333d196 354 Gene3D G3DSA:2.40.30.170 56 277 9.2E-67 T 17-10-2018 VI35_15015 a79b96b50087e8e65ee7f8f38333d196 354 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 45 347 2.8E-72 T 17-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VI35_15015 a79b96b50087e8e65ee7f8f38333d196 354 Gene3D G3DSA:2.40.50.100 67 195 9.2E-67 T 17-10-2018 VI35_15015 a79b96b50087e8e65ee7f8f38333d196 354 SUPERFAMILY SSF111369 59 272 1.26E-36 T 17-10-2018 VI35_15015 a79b96b50087e8e65ee7f8f38333d196 354 Gene3D G3DSA:1.10.287.470 102 161 9.2E-67 T 17-10-2018 VI35_09410 c9eabe4c2e8f565d3350279c81330b1f 201 Pfam PF06037 Bacterial protein of unknown function (DUF922) 41 192 1.7E-31 T 17-10-2018 IPR010321 Protein of unknown function DUF922 VI35_07390 d891ee6ba69acba48c02d360c85c94ef 482 Gene3D G3DSA:3.30.2130.30 1 174 3.7E-34 T 17-10-2018 VI35_07390 d891ee6ba69acba48c02d360c85c94ef 482 SUPERFAMILY SSF52821 393 481 1.28E-12 T 17-10-2018 IPR036873 Rhodanese-like domain superfamily VI35_07390 d891ee6ba69acba48c02d360c85c94ef 482 Gene3D G3DSA:3.40.50.620 175 383 3.6E-49 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_07390 d891ee6ba69acba48c02d360c85c94ef 482 Pfam PF02926 THUMP domain 28 161 2.7E-23 T 17-10-2018 IPR004114 THUMP domain GO:0003723 VI35_07390 d891ee6ba69acba48c02d360c85c94ef 482 SUPERFAMILY SSF52402 176 372 7.45E-41 T 17-10-2018 VI35_07390 d891ee6ba69acba48c02d360c85c94ef 482 TIGRFAM TIGR04271 ThiI_C_thiazole: thiazole biosynthesis domain 383 482 5.1E-39 T 17-10-2018 IPR026340 Thiazole biosynthesis domain GO:0052837 KEGG: 00730+2.8.1.4 VI35_07390 d891ee6ba69acba48c02d360c85c94ef 482 SMART SM00981 75 165 1.5E-25 T 17-10-2018 IPR004114 THUMP domain GO:0003723 VI35_07390 d891ee6ba69acba48c02d360c85c94ef 482 SUPERFAMILY SSF143437 1 173 2.62E-47 T 17-10-2018 VI35_07390 d891ee6ba69acba48c02d360c85c94ef 482 Gene3D G3DSA:3.40.250.10 384 482 3.3E-11 T 17-10-2018 IPR036873 Rhodanese-like domain superfamily VI35_07390 d891ee6ba69acba48c02d360c85c94ef 482 Hamap MF_00021 tRNA sulfurtransferase [thiI]. 1 482 219.172 T 17-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 VI35_07390 d891ee6ba69acba48c02d360c85c94ef 482 Pfam PF02568 Thiamine biosynthesis protein (ThiI) 176 369 1.3E-70 T 17-10-2018 IPR020536 Thil, AANH domain GO:0004810 KEGG: 00730+2.8.1.4 VI35_07390 d891ee6ba69acba48c02d360c85c94ef 482 TIGRFAM TIGR00342 TIGR00342: tRNA sulfurtransferase ThiI 4 376 1.5E-113 T 17-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 VI35_01355 02beb7edf193c3a8466701098b5e01a8 156 Gene3D G3DSA:1.10.455.10 2 155 2.2E-62 T 17-10-2018 IPR036823 Ribosomal protein S7 domain superfamily VI35_01355 02beb7edf193c3a8466701098b5e01a8 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 3.2E-66 T 17-10-2018 IPR023798 Ribosomal protein S7 domain VI35_01355 02beb7edf193c3a8466701098b5e01a8 156 SUPERFAMILY SSF47973 6 149 4.19E-60 T 17-10-2018 IPR036823 Ribosomal protein S7 domain superfamily VI35_01355 02beb7edf193c3a8466701098b5e01a8 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 35.807 T 17-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 VI35_01355 02beb7edf193c3a8466701098b5e01a8 156 PIRSF PIRSF002122 3 156 2.9E-61 T 17-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 VI35_01355 02beb7edf193c3a8466701098b5e01a8 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 17-10-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_01355 02beb7edf193c3a8466701098b5e01a8 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 1.2E-69 T 17-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 VI35_18515 e01c7719f37e75c6a46a7ae34be9c16f 314 SUPERFAMILY SSF51735 101 279 1.47E-51 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_18515 e01c7719f37e75c6a46a7ae34be9c16f 314 Gene3D G3DSA:3.40.50.720 20 306 1.4E-115 T 17-10-2018 VI35_18515 e01c7719f37e75c6a46a7ae34be9c16f 314 Gene3D G3DSA:3.40.50.720 99 283 1.4E-115 T 17-10-2018 VI35_18515 e01c7719f37e75c6a46a7ae34be9c16f 314 SUPERFAMILY SSF52283 40 126 3.29E-7 T 17-10-2018 VI35_18515 e01c7719f37e75c6a46a7ae34be9c16f 314 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 107 278 2.4E-53 T 17-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 VI35_10780 c4d12a5b885f2bc8b9faaa9e87f7edd2 173 Pfam PF02620 Uncharacterized ACR, COG1399 62 171 1.4E-16 T 17-10-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD VI35_13415 5144fbff556e6b08ea15f76f9f619d6c 463 Gene3D G3DSA:3.40.720.10 13 463 2.1E-142 T 17-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VI35_13415 5144fbff556e6b08ea15f76f9f619d6c 463 SMART SM00098 33 463 8.2E-104 T 17-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 VI35_13415 5144fbff556e6b08ea15f76f9f619d6c 463 Pfam PF00245 Alkaline phosphatase 32 463 2.2E-107 T 17-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 VI35_13415 5144fbff556e6b08ea15f76f9f619d6c 463 SUPERFAMILY SSF53649 28 463 8.92E-130 T 17-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VI35_13415 5144fbff556e6b08ea15f76f9f619d6c 463 PRINTS PR00113 Alkaline phosphatase signature 82 97 3.3E-45 T 17-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 VI35_13415 5144fbff556e6b08ea15f76f9f619d6c 463 PRINTS PR00113 Alkaline phosphatase signature 32 52 3.3E-45 T 17-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 VI35_13415 5144fbff556e6b08ea15f76f9f619d6c 463 PRINTS PR00113 Alkaline phosphatase signature 130 150 3.3E-45 T 17-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 VI35_13415 5144fbff556e6b08ea15f76f9f619d6c 463 PRINTS PR00113 Alkaline phosphatase signature 184 194 3.3E-45 T 17-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 VI35_13415 5144fbff556e6b08ea15f76f9f619d6c 463 PRINTS PR00113 Alkaline phosphatase signature 259 288 3.3E-45 T 17-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 VI35_06850 437b5eb6de3f34e1875ffbfa00ea6cde 164 Pfam PF01967 MoaC family 14 149 3.0E-56 T 17-10-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VI35_06850 437b5eb6de3f34e1875ffbfa00ea6cde 164 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 3 151 5.9E-70 T 17-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VI35_06850 437b5eb6de3f34e1875ffbfa00ea6cde 164 Gene3D G3DSA:3.30.70.640 1 159 4.3E-72 T 17-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VI35_06850 437b5eb6de3f34e1875ffbfa00ea6cde 164 SUPERFAMILY SSF55040 10 154 3.53E-62 T 17-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VI35_06850 437b5eb6de3f34e1875ffbfa00ea6cde 164 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase [moaC]. 1 157 36.606 T 17-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VI35_05770 6cda00d0d56d3eee79948ed6cb68f5b6 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 2.4E-16 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_05770 6cda00d0d56d3eee79948ed6cb68f5b6 294 Pfam PF03466 LysR substrate binding domain 95 285 8.0E-19 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_05770 6cda00d0d56d3eee79948ed6cb68f5b6 294 SUPERFAMILY SSF46785 8 91 1.34E-18 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_05770 6cda00d0d56d3eee79948ed6cb68f5b6 294 Gene3D G3DSA:1.10.10.10 4 87 4.2E-20 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_05770 6cda00d0d56d3eee79948ed6cb68f5b6 294 Gene3D G3DSA:3.40.190.290 134 271 1.6E-13 T 17-10-2018 VI35_05770 6cda00d0d56d3eee79948ed6cb68f5b6 294 SUPERFAMILY SSF53850 94 285 4.16E-20 T 17-10-2018 VI35_01070 37c98e6a63b8f71219e49e233bcf4323 173 Gene3D G3DSA:2.40.128.20 16 170 5.8E-50 T 17-10-2018 IPR012674 Calycin VI35_01070 37c98e6a63b8f71219e49e233bcf4323 173 SUPERFAMILY SSF50814 5 167 3.12E-51 T 17-10-2018 IPR012674 Calycin VI35_01070 37c98e6a63b8f71219e49e233bcf4323 173 PRINTS PR01171 Bacterial lipocalin signature 65 74 4.3E-31 T 17-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 VI35_01070 37c98e6a63b8f71219e49e233bcf4323 173 PRINTS PR01171 Bacterial lipocalin signature 98 112 4.3E-31 T 17-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 VI35_01070 37c98e6a63b8f71219e49e233bcf4323 173 PRINTS PR01171 Bacterial lipocalin signature 155 165 4.3E-31 T 17-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 VI35_01070 37c98e6a63b8f71219e49e233bcf4323 173 PRINTS PR01171 Bacterial lipocalin signature 46 62 4.3E-31 T 17-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 VI35_01070 37c98e6a63b8f71219e49e233bcf4323 173 PRINTS PR01171 Bacterial lipocalin signature 29 43 4.3E-31 T 17-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 VI35_01070 37c98e6a63b8f71219e49e233bcf4323 173 Pfam PF08212 Lipocalin-like domain 30 166 7.3E-41 T 17-10-2018 IPR000566 Lipocalin/cytosolic fatty-acid binding domain VI35_01070 37c98e6a63b8f71219e49e233bcf4323 173 PIRSF PIRSF036893 1 172 1.7E-42 T 17-10-2018 IPR022271 Lipocalin, ApoD type VI35_09890 f2179716bffbf9245a7a11f0bd7723eb 196 Gene3D G3DSA:1.10.3210.10 1 196 1.1E-76 T 17-10-2018 VI35_09890 f2179716bffbf9245a7a11f0bd7723eb 196 ProDom PD353566 UPF0207 HYDROLASE HD PHOSPHOHYDROLASE METAL-DEPENDENT SUBDOMAIN YFBR PHOSPHOHYDROLASE NUCLEOTIDE-BINDING NUCLEOSIDE 80 183 1.0E-31 T 17-10-2018 VI35_09890 f2179716bffbf9245a7a11f0bd7723eb 196 Pfam PF13023 HD domain 12 157 6.0E-17 T 17-10-2018 IPR006674 HD domain VI35_09890 f2179716bffbf9245a7a11f0bd7723eb 196 Hamap MF_01100 5'-deoxynucleotidase YfbR [yfbR]. 3 195 41.103 T 17-10-2018 IPR022971 5'-deoxynucleotidase YfbR KEGG: 00240+3.1.3.89 VI35_09890 f2179716bffbf9245a7a11f0bd7723eb 196 SMART SM00471 26 151 2.7E-6 T 17-10-2018 IPR003607 HD/PDEase domain VI35_09890 f2179716bffbf9245a7a11f0bd7723eb 196 SUPERFAMILY SSF109604 4 184 7.99E-45 T 17-10-2018 VI35_15595 298a00705653bda2ad9b3ba15b6276bf 111 Pfam PF04287 tRNA pseudouridine synthase C 8 102 3.9E-32 T 17-10-2018 IPR023376 YqcC-like domain VI35_15595 298a00705653bda2ad9b3ba15b6276bf 111 SUPERFAMILY SSF158452 1 106 1.83E-33 T 17-10-2018 IPR036814 YqcC-like superfamily VI35_15595 298a00705653bda2ad9b3ba15b6276bf 111 Gene3D G3DSA:1.20.1440.40 1 105 2.8E-31 T 17-10-2018 IPR036814 YqcC-like superfamily VI35_15595 298a00705653bda2ad9b3ba15b6276bf 111 PIRSF PIRSF006257 1 108 7.5E-32 T 17-10-2018 IPR007384 Protein of unknown function UCP006257 VI35_06615 0357dce0ff0219295f299b73dcfc5209 545 SUPERFAMILY SSF161098 294 535 2.75E-23 T 17-10-2018 IPR035906 MetI-like superfamily VI35_06615 0357dce0ff0219295f299b73dcfc5209 545 Gene3D G3DSA:1.10.3720.10 3 271 4.5E-16 T 17-10-2018 IPR035906 MetI-like superfamily VI35_06615 0357dce0ff0219295f299b73dcfc5209 545 SUPERFAMILY SSF161098 8 265 2.18E-18 T 17-10-2018 IPR035906 MetI-like superfamily VI35_06615 0357dce0ff0219295f299b73dcfc5209 545 Gene3D G3DSA:1.10.3720.10 288 532 6.8E-18 T 17-10-2018 IPR035906 MetI-like superfamily VI35_04395 93adcc4e3b6afec53e5e6055941ea907 345 ProSitePatterns PS00211 ABC transporters family signature. 175 189 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_04395 93adcc4e3b6afec53e5e6055941ea907 345 SMART SM00382 51 252 3.8E-16 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_04395 93adcc4e3b6afec53e5e6055941ea907 345 Gene3D G3DSA:3.40.50.300 20 344 2.3E-105 T 17-10-2018 VI35_04395 93adcc4e3b6afec53e5e6055941ea907 345 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 253 338 2.1E-26 T 17-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VI35_04395 93adcc4e3b6afec53e5e6055941ea907 345 SUPERFAMILY SSF52540 51 332 1.59E-73 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_04395 93adcc4e3b6afec53e5e6055941ea907 345 Pfam PF00005 ABC transporter 42 202 1.9E-29 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_04395 93adcc4e3b6afec53e5e6055941ea907 345 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 254 319 2.9E-21 T 17-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VI35_14015 200b3b0b00707b803c208a3efb2302e5 206 Pfam PF01300 Telomere recombination 22 198 4.7E-46 T 17-10-2018 IPR006070 YrdC-like domain GO:0003725 VI35_14015 200b3b0b00707b803c208a3efb2302e5 206 Gene3D G3DSA:3.90.870.10 1 205 4.6E-68 T 17-10-2018 VI35_14015 200b3b0b00707b803c208a3efb2302e5 206 SUPERFAMILY SSF55821 1 203 8.85E-66 T 17-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily VI35_14015 200b3b0b00707b803c208a3efb2302e5 206 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 7 200 1.2E-68 T 17-10-2018 IPR006070 YrdC-like domain GO:0003725 VI35_13630 9d5538a1cbb7b78c068002a8af2f09bf 262 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 17-10-2018 IPR019776 Flagellar basal body rod protein, conserved site VI35_13630 9d5538a1cbb7b78c068002a8af2f09bf 262 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 137 4.7E-43 T 17-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G VI35_13630 9d5538a1cbb7b78c068002a8af2f09bf 262 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 147 244 9.5E-32 T 17-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G VI35_13630 9d5538a1cbb7b78c068002a8af2f09bf 262 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 261 7.9E-113 T 17-10-2018 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 VI35_13630 9d5538a1cbb7b78c068002a8af2f09bf 262 Pfam PF00460 Flagella basal body rod protein 5 35 9.0E-12 T 17-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 VI35_13630 9d5538a1cbb7b78c068002a8af2f09bf 262 SUPERFAMILY SSF117143 92 223 9.15E-36 T 17-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like VI35_13630 9d5538a1cbb7b78c068002a8af2f09bf 262 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 184 259 1.9E-25 T 17-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain VI35_18970 a22becb33b477fb56030a8ae9812c4ce 78 Pfam PF12292 Protein of unknown function (DUF3624) 1 73 2.1E-25 T 17-10-2018 IPR022072 Protein of unknown function DUF3624 VI35_05245 2925fd33efbe0ac15e53f83a53a013a9 218 SUPERFAMILY SSF48613 1 210 7.09E-64 T 17-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 VI35_05245 2925fd33efbe0ac15e53f83a53a013a9 218 SMART SM01236 72 170 7.8E-8 T 17-10-2018 VI35_05245 2925fd33efbe0ac15e53f83a53a013a9 218 Pfam PF14518 Iron-containing redox enzyme 39 206 3.5E-24 T 17-10-2018 VI35_05245 2925fd33efbe0ac15e53f83a53a013a9 218 Gene3D G3DSA:1.20.910.10 3 217 5.7E-56 T 17-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 VI35_15745 cfbfe81547858e0612efeafc980bdee7 377 PIRSF PIRSF037565 1 377 5.8E-158 T 17-10-2018 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 VI35_15745 cfbfe81547858e0612efeafc980bdee7 377 Gene3D G3DSA:3.40.50.150 191 377 1.1E-53 T 17-10-2018 VI35_15745 cfbfe81547858e0612efeafc980bdee7 377 Gene3D G3DSA:3.40.50.150 9 182 5.7E-54 T 17-10-2018 VI35_15745 cfbfe81547858e0612efeafc980bdee7 377 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 305 311 - T 17-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 VI35_15745 cfbfe81547858e0612efeafc980bdee7 377 SUPERFAMILY SSF53335 196 373 2.02E-28 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_15745 cfbfe81547858e0612efeafc980bdee7 377 Pfam PF05175 Methyltransferase small domain 203 373 1.4E-54 T 17-10-2018 IPR007848 Methyltransferase small domain GO:0008168 VI35_15745 cfbfe81547858e0612efeafc980bdee7 377 Hamap MF_01859 Ribosomal RNA large subunit methyltransferase G [rlmG]. 2 376 50.542 T 17-10-2018 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 VI35_05630 d9c87da6089f584871229c35c6cc37c7 320 Hamap MF_00492 Transaldolase [tal]. 6 320 51.982 T 17-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 VI35_05630 d9c87da6089f584871229c35c6cc37c7 320 TIGRFAM TIGR00874 talAB: transaldolase 8 319 1.3E-157 T 17-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 VI35_05630 d9c87da6089f584871229c35c6cc37c7 320 ProSitePatterns PS01054 Transaldolase signature 1. 35 43 - T 17-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 VI35_05630 d9c87da6089f584871229c35c6cc37c7 320 Gene3D G3DSA:3.20.20.70 6 320 1.8E-140 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_05630 d9c87da6089f584871229c35c6cc37c7 320 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 18 315 1.8E-101 T 17-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 VI35_05630 d9c87da6089f584871229c35c6cc37c7 320 SUPERFAMILY SSF51569 5 319 3.87E-115 T 17-10-2018 VI35_05630 d9c87da6089f584871229c35c6cc37c7 320 ProSitePatterns PS00958 Transaldolase active site. 133 150 - T 17-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 VI35_05290 2db4f27690e87a6deb132dfca6edce1d 244 Pfam PF13183 4Fe-4S dicluster domain 146 219 9.7E-12 T 17-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VI35_05290 2db4f27690e87a6deb132dfca6edce1d 244 Gene3D G3DSA:3.10.20.30 1 105 1.8E-37 T 17-10-2018 IPR012675 Beta-grasp domain superfamily VI35_05290 2db4f27690e87a6deb132dfca6edce1d 244 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 7 110 1.5E-36 T 17-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_05290 2db4f27690e87a6deb132dfca6edce1d 244 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 149 160 - T 17-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VI35_05290 2db4f27690e87a6deb132dfca6edce1d 244 SUPERFAMILY SSF46548 106 229 2.96E-33 T 17-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VI35_05290 2db4f27690e87a6deb132dfca6edce1d 244 Gene3D G3DSA:1.10.1060.10 106 244 1.0E-48 T 17-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VI35_05290 2db4f27690e87a6deb132dfca6edce1d 244 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 9 228 1.4E-90 T 17-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_05290 2db4f27690e87a6deb132dfca6edce1d 244 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 56 64 - T 17-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 VI35_05290 2db4f27690e87a6deb132dfca6edce1d 244 SUPERFAMILY SSF54292 4 105 3.64E-32 T 17-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 VI35_04555 13c1c255542e1405b7a4011441689fa8 398 Pfam PF00005 ABC transporter 45 192 1.0E-33 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_04555 13c1c255542e1405b7a4011441689fa8 398 SMART SM00382 53 242 6.5E-18 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_04555 13c1c255542e1405b7a4011441689fa8 398 SUPERFAMILY SSF54631 276 392 9.1E-11 T 17-10-2018 VI35_04555 13c1c255542e1405b7a4011441689fa8 398 ProSitePatterns PS00211 ABC transporters family signature. 165 179 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_04555 13c1c255542e1405b7a4011441689fa8 398 SUPERFAMILY SSF52540 38 271 1.83E-74 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_04555 13c1c255542e1405b7a4011441689fa8 398 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 36 395 5.6E-158 T 17-10-2018 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 VI35_04555 13c1c255542e1405b7a4011441689fa8 398 Gene3D G3DSA:3.40.50.300 32 268 1.3E-72 T 17-10-2018 VI35_04555 13c1c255542e1405b7a4011441689fa8 398 Gene3D G3DSA:3.10.580.10 288 395 1.4E-7 T 17-10-2018 VI35_04555 13c1c255542e1405b7a4011441689fa8 398 Pfam PF00571 CBS domain 349 392 0.0044 T 17-10-2018 IPR000644 CBS domain VI35_10800 5a2ba60e2032974234426fd6c0c4dee6 311 Pfam PF00698 Acyl transferase domain 8 281 1.7E-36 T 17-10-2018 IPR014043 Acyl transferase VI35_10800 5a2ba60e2032974234426fd6c0c4dee6 311 SUPERFAMILY SSF55048 128 197 7.19E-17 T 17-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding VI35_10800 5a2ba60e2032974234426fd6c0c4dee6 311 Gene3D G3DSA:3.30.70.250 125 197 1.2E-102 T 17-10-2018 VI35_10800 5a2ba60e2032974234426fd6c0c4dee6 311 SUPERFAMILY SSF52151 4 308 3.4E-78 T 17-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase VI35_10800 5a2ba60e2032974234426fd6c0c4dee6 311 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 3 290 2.6E-121 T 17-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 VI35_10800 5a2ba60e2032974234426fd6c0c4dee6 311 PIRSF PIRSF000446 1 311 1.4E-128 T 17-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 VI35_10800 5a2ba60e2032974234426fd6c0c4dee6 311 Gene3D G3DSA:3.40.366.10 7 286 1.2E-102 T 17-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 VI35_10800 5a2ba60e2032974234426fd6c0c4dee6 311 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 7 297 1.1E-38 T 17-10-2018 IPR020801 Polyketide synthase, acyl transferase domain VI35_07115 17f6b60a2e481707f128275e09e4706d 500 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 362 382 - T 17-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 VI35_07115 17f6b60a2e481707f128275e09e4706d 500 SUPERFAMILY SSF53067 7 255 1.89E-95 T 17-10-2018 VI35_07115 17f6b60a2e481707f128275e09e4706d 500 Hamap MF_00186 Glycerol kinase [glpK]. 5 497 59.171 T 17-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 VI35_07115 17f6b60a2e481707f128275e09e4706d 500 Gene3D G3DSA:3.30.420.40 254 500 1.2E-91 T 17-10-2018 VI35_07115 17f6b60a2e481707f128275e09e4706d 500 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 8 252 1.2E-86 T 17-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 VI35_07115 17f6b60a2e481707f128275e09e4706d 500 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 137 149 - T 17-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 VI35_07115 17f6b60a2e481707f128275e09e4706d 500 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 6 496 6.9E-228 T 17-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 VI35_07115 17f6b60a2e481707f128275e09e4706d 500 SUPERFAMILY SSF53067 255 496 6.04E-85 T 17-10-2018 VI35_07115 17f6b60a2e481707f128275e09e4706d 500 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 261 450 1.3E-60 T 17-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 VI35_07115 17f6b60a2e481707f128275e09e4706d 500 Gene3D G3DSA:3.30.420.40 3 253 8.1E-111 T 17-10-2018 VI35_07115 17f6b60a2e481707f128275e09e4706d 500 PIRSF PIRSF000538 5 500 4.5E-179 T 17-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 VI35_15840 f70e3a065853824de2b535d2393e2b5f 254 ProSitePatterns PS00622 LuxR-type HTH domain signature. 193 220 - T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_15840 f70e3a065853824de2b535d2393e2b5f 254 SMART SM00421 176 233 2.1E-21 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_15840 f70e3a065853824de2b535d2393e2b5f 254 SUPERFAMILY SSF75516 6 168 1.05E-38 T 17-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily VI35_15840 f70e3a065853824de2b535d2393e2b5f 254 Pfam PF03472 Autoinducer binding domain 19 164 6.0E-35 T 17-10-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain VI35_15840 f70e3a065853824de2b535d2393e2b5f 254 Gene3D G3DSA:1.10.10.10 172 239 3.0E-23 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_15840 f70e3a065853824de2b535d2393e2b5f 254 SUPERFAMILY SSF46894 170 239 4.76E-18 T 17-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VI35_15840 f70e3a065853824de2b535d2393e2b5f 254 Pfam PF00196 Bacterial regulatory proteins, luxR family 178 233 3.9E-18 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_15840 f70e3a065853824de2b535d2393e2b5f 254 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 193 1.2E-10 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_15840 f70e3a065853824de2b535d2393e2b5f 254 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 209 221 1.2E-10 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_15840 f70e3a065853824de2b535d2393e2b5f 254 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 193 209 1.2E-10 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_15840 f70e3a065853824de2b535d2393e2b5f 254 Gene3D G3DSA:3.30.450.80 4 170 2.0E-41 T 17-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily VI35_13780 fbc6390702fae8d080f408753bb5f24b 1278 SMART SM00490 1141 1223 2.6E-20 T 17-10-2018 IPR001650 Helicase, C-terminal VI35_13780 fbc6390702fae8d080f408753bb5f24b 1278 Pfam PF00271 Helicase conserved C-terminal domain 1113 1223 6.0E-18 T 17-10-2018 IPR001650 Helicase, C-terminal VI35_13780 fbc6390702fae8d080f408753bb5f24b 1278 Pfam PF00176 SNF2 family N-terminal domain 838 1102 1.3E-53 T 17-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 VI35_13780 fbc6390702fae8d080f408753bb5f24b 1278 Gene3D G3DSA:1.20.120.850 1056 1267 9.9E-78 T 17-10-2018 VI35_13780 fbc6390702fae8d080f408753bb5f24b 1278 SMART SM00487 825 1009 5.7E-29 T 17-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VI35_13780 fbc6390702fae8d080f408753bb5f24b 1278 Gene3D G3DSA:3.40.50.10810 799 1033 3.9E-62 T 17-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily VI35_13780 fbc6390702fae8d080f408753bb5f24b 1278 SUPERFAMILY SSF52540 1036 1275 1.77E-63 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_13780 fbc6390702fae8d080f408753bb5f24b 1278 SUPERFAMILY SSF52540 815 1034 1.5E-52 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_13780 fbc6390702fae8d080f408753bb5f24b 1278 Gene3D G3DSA:3.40.50.300 1041 1237 9.9E-78 T 17-10-2018 VI35_17095 c74e260d67b5879d87501f4bfe25054b 596 SUPERFAMILY SSF56801 5 594 1.31E-105 T 17-10-2018 VI35_17095 c74e260d67b5879d87501f4bfe25054b 596 Pfam PF00501 AMP-binding enzyme 12 464 3.2E-90 T 17-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 VI35_17095 c74e260d67b5879d87501f4bfe25054b 596 ProSitePatterns PS00455 Putative AMP-binding domain signature. 181 192 - T 17-10-2018 IPR020845 AMP-binding, conserved site VI35_17095 c74e260d67b5879d87501f4bfe25054b 596 Gene3D G3DSA:3.40.50.12780 1 317 1.6E-54 T 17-10-2018 VI35_17095 c74e260d67b5879d87501f4bfe25054b 596 Gene3D G3DSA:3.40.50.12780 318 454 9.9E-31 T 17-10-2018 VI35_18000 9eea1ef0d701e15743a2056e9101922d 216 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 28 202 1.8E-19 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_18000 9eea1ef0d701e15743a2056e9101922d 216 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 3 106 1.5E-16 T 17-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 VI35_18000 9eea1ef0d701e15743a2056e9101922d 216 SUPERFAMILY SSF161098 4 197 1.31E-38 T 17-10-2018 IPR035906 MetI-like superfamily VI35_18000 9eea1ef0d701e15743a2056e9101922d 216 Gene3D G3DSA:1.10.3720.10 1 214 3.8E-47 T 17-10-2018 IPR035906 MetI-like superfamily VI35_16785 57e3506a4cabc8111409bbb155ad5732 207 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 65 9.5E-11 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_16785 57e3506a4cabc8111409bbb155ad5732 207 SUPERFAMILY SSF48498 86 172 4.45E-5 T 17-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VI35_16785 57e3506a4cabc8111409bbb155ad5732 207 SUPERFAMILY SSF46689 6 79 1.69E-16 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_16785 57e3506a4cabc8111409bbb155ad5732 207 Gene3D G3DSA:1.10.357.10 1 205 3.0E-54 T 17-10-2018 VI35_16525 690440ae70b4b42a3ca4ec84a094b58a 161 SUPERFAMILY SSF47413 3 58 5.91E-14 T 17-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VI35_16525 690440ae70b4b42a3ca4ec84a094b58a 161 Pfam PF01381 Helix-turn-helix 3 54 9.8E-15 T 17-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VI35_16525 690440ae70b4b42a3ca4ec84a094b58a 161 Pfam PF13239 2TM domain 80 157 7.1E-26 T 17-10-2018 IPR025698 2TM domain VI35_16525 690440ae70b4b42a3ca4ec84a094b58a 161 SMART SM00530 2 56 1.3E-13 T 17-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VI35_16525 690440ae70b4b42a3ca4ec84a094b58a 161 Gene3D G3DSA:1.10.260.40 2 61 1.9E-15 T 17-10-2018 VI35_11755 35cb97f75d0c70337b9abe10f1613e83 400 Gene3D G3DSA:1.10.1060.10 3 90 2.1E-8 T 17-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VI35_11755 35cb97f75d0c70337b9abe10f1613e83 400 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 60 71 - T 17-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VI35_11755 35cb97f75d0c70337b9abe10f1613e83 400 Pfam PF13183 4Fe-4S dicluster domain 10 74 8.7E-10 T 17-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VI35_11755 35cb97f75d0c70337b9abe10f1613e83 400 SUPERFAMILY SSF46548 10 86 2.09E-15 T 17-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VI35_11755 35cb97f75d0c70337b9abe10f1613e83 400 TIGRFAM TIGR03379 glycerol3P_GlpC: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit 7 399 5.7E-228 T 17-10-2018 IPR017753 Glycerol-3-phosphate dehydrogenase, GlpC subunit GO:0009061|GO:0016020 VI35_11755 35cb97f75d0c70337b9abe10f1613e83 400 Pfam PF02754 Cysteine-rich domain 297 380 1.2E-12 T 17-10-2018 IPR004017 Cysteine-rich domain VI35_11755 35cb97f75d0c70337b9abe10f1613e83 400 Pfam PF02754 Cysteine-rich domain 167 253 7.7E-15 T 17-10-2018 IPR004017 Cysteine-rich domain VI35_19995 77aff4d75f209609b6568952b2a6123d 213 Pfam PF01081 KDPG and KHG aldolase 12 203 1.8E-76 T 17-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 VI35_19995 77aff4d75f209609b6568952b2a6123d 213 Gene3D G3DSA:3.20.20.70 1 213 3.6E-77 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_19995 77aff4d75f209609b6568952b2a6123d 213 SUPERFAMILY SSF51569 3 212 5.13E-71 T 17-10-2018 VI35_19995 77aff4d75f209609b6568952b2a6123d 213 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 40 49 - T 17-10-2018 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 VI35_19995 77aff4d75f209609b6568952b2a6123d 213 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 10 210 9.5E-83 T 17-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 VI35_19995 77aff4d75f209609b6568952b2a6123d 213 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 128 141 - T 17-10-2018 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 VI35_09775 4d8c3ca98d076b7e50449363319466fc 1031 SMART SM00642 450 931 3.0E-37 T 17-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VI35_09775 4d8c3ca98d076b7e50449363319466fc 1031 SUPERFAMILY SSF49299 174 255 8.63E-7 T 17-10-2018 IPR035986 PKD domain superfamily VI35_09775 4d8c3ca98d076b7e50449363319466fc 1031 Gene3D G3DSA:3.20.20.80 439 622 1.8E-44 T 17-10-2018 VI35_09775 4d8c3ca98d076b7e50449363319466fc 1031 Gene3D G3DSA:2.60.40.10 171 255 4.8E-13 T 17-10-2018 IPR013783 Immunoglobulin-like fold VI35_09775 4d8c3ca98d076b7e50449363319466fc 1031 Gene3D G3DSA:3.20.20.80 632 933 9.2E-31 T 17-10-2018 VI35_09775 4d8c3ca98d076b7e50449363319466fc 1031 Pfam PF13290 Chitobiase/beta-hexosaminidase C-terminal domain 354 424 9.9E-9 T 17-10-2018 VI35_09775 4d8c3ca98d076b7e50449363319466fc 1031 SUPERFAMILY SSF51445 444 938 4.6E-65 T 17-10-2018 IPR017853 Glycoside hydrolase superfamily VI35_09775 4d8c3ca98d076b7e50449363319466fc 1031 Pfam PF00128 Alpha amylase, catalytic domain 480 561 4.2E-24 T 17-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VI35_02165 f5581104b6d6af93a42ce1f58887d2ec 349 Pfam PF02120 Flagellar hook-length control protein FliK 233 313 9.6E-19 T 17-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal VI35_02165 f5581104b6d6af93a42ce1f58887d2ec 349 Gene3D G3DSA:3.30.750.140 211 323 1.1E-21 T 17-10-2018 IPR038610 FliK-like, C-terminal domain superfamily VI35_03935 3902438fec8808e9bec79f3c17598526 92 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 10 51 5.2E-13 T 17-10-2018 IPR010221 VCBS repeat VI35_06080 c566f49b0db4319471c3ea486fda40e5 194 SUPERFAMILY SSF54719 84 193 6.02E-43 T 17-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VI35_06080 c566f49b0db4319471c3ea486fda40e5 194 Gene3D G3DSA:1.10.287.990 20 82 4.3E-26 T 17-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VI35_06080 c566f49b0db4319471c3ea486fda40e5 194 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 158 165 - T 17-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VI35_06080 c566f49b0db4319471c3ea486fda40e5 194 SUPERFAMILY SSF46609 1 84 1.1E-35 T 17-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VI35_06080 c566f49b0db4319471c3ea486fda40e5 194 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 3 82 5.8E-35 T 17-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VI35_06080 c566f49b0db4319471c3ea486fda40e5 194 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 89 190 1.5E-36 T 17-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VI35_06080 c566f49b0db4319471c3ea486fda40e5 194 PRINTS PR01703 Manganese superoxide dismutase signature 118 126 1.7E-21 T 17-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VI35_06080 c566f49b0db4319471c3ea486fda40e5 194 PRINTS PR01703 Manganese superoxide dismutase signature 156 168 1.7E-21 T 17-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VI35_06080 c566f49b0db4319471c3ea486fda40e5 194 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 1.7E-21 T 17-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VI35_06080 c566f49b0db4319471c3ea486fda40e5 194 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 1.7E-21 T 17-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VI35_06080 c566f49b0db4319471c3ea486fda40e5 194 PRINTS PR01703 Manganese superoxide dismutase signature 65 78 1.7E-21 T 17-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VI35_06080 c566f49b0db4319471c3ea486fda40e5 194 Gene3D G3DSA:2.40.500.20 83 194 1.1E-40 T 17-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VI35_06080 c566f49b0db4319471c3ea486fda40e5 194 PIRSF PIRSF000349 1 194 2.3E-83 T 17-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VI35_02890 7b2eb140ea37baba6e7a501362058cda 269 SMART SM00421 199 256 1.8E-20 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_02890 7b2eb140ea37baba6e7a501362058cda 269 ProSitePatterns PS00622 LuxR-type HTH domain signature. 216 243 - T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_02890 7b2eb140ea37baba6e7a501362058cda 269 Pfam PF00196 Bacterial regulatory proteins, luxR family 201 254 2.6E-16 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_02890 7b2eb140ea37baba6e7a501362058cda 269 Gene3D G3DSA:1.10.10.10 68 267 3.5E-19 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_02890 7b2eb140ea37baba6e7a501362058cda 269 SUPERFAMILY SSF46894 194 259 2.72E-17 T 17-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VI35_02890 7b2eb140ea37baba6e7a501362058cda 269 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 202 216 4.2E-9 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_02890 7b2eb140ea37baba6e7a501362058cda 269 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 216 232 4.2E-9 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_02890 7b2eb140ea37baba6e7a501362058cda 269 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 232 244 4.2E-9 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_18125 99776e7b6aebb03d8096212ef79d4a17 274 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 226 248 - T 17-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 VI35_18125 99776e7b6aebb03d8096212ef79d4a17 274 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 6 269 4.9E-67 T 17-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 VI35_18125 99776e7b6aebb03d8096212ef79d4a17 274 PIRSF PIRSF000193 3 272 2.7E-70 T 17-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 VI35_18125 99776e7b6aebb03d8096212ef79d4a17 274 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 6 101 5.9E-22 T 17-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal VI35_18125 99776e7b6aebb03d8096212ef79d4a17 274 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 4 270 25.075 T 17-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 VI35_18125 99776e7b6aebb03d8096212ef79d4a17 274 SUPERFAMILY SSF48179 167 271 1.41E-27 T 17-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VI35_18125 99776e7b6aebb03d8096212ef79d4a17 274 SUPERFAMILY SSF51735 4 162 2.42E-38 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_18125 99776e7b6aebb03d8096212ef79d4a17 274 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 168 270 1.8E-28 T 17-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 VI35_18125 99776e7b6aebb03d8096212ef79d4a17 274 Gene3D G3DSA:1.10.3730.10 166 274 1.8E-31 T 17-10-2018 VI35_18125 99776e7b6aebb03d8096212ef79d4a17 274 Gene3D G3DSA:3.40.50.720 2 165 4.5E-49 T 17-10-2018 VI35_17040 4a15db081c63fe64714dba9b33d5d886 153 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 48 81 3.3E-6 T 17-10-2018 IPR001451 Hexapeptide repeat VI35_17040 4a15db081c63fe64714dba9b33d5d886 153 Gene3D G3DSA:2.160.10.10 6 152 9.2E-34 T 17-10-2018 VI35_17040 4a15db081c63fe64714dba9b33d5d886 153 SUPERFAMILY SSF51161 28 152 2.77E-33 T 17-10-2018 IPR011004 Trimeric LpxA-like superfamily VI35_17040 4a15db081c63fe64714dba9b33d5d886 153 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 101 134 2.9E-8 T 17-10-2018 IPR001451 Hexapeptide repeat VI35_19945 c971a9d47f295d6660299fcc21e0dd97 192 TIGRFAM TIGR03341 YhgI_GntY: IscR-regulated protein YhgI 2 192 4.2E-98 T 17-10-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 VI35_19945 c971a9d47f295d6660299fcc21e0dd97 192 Hamap MF_01637 Fe/S biogenesis protein NfuA [nfuA]. 1 192 45.664 T 17-10-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 VI35_19945 c971a9d47f295d6660299fcc21e0dd97 192 SUPERFAMILY SSF89360 1 97 2.75E-22 T 17-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 VI35_19945 c971a9d47f295d6660299fcc21e0dd97 192 Pfam PF01106 NifU-like domain 111 174 2.5E-19 T 17-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 VI35_19945 c971a9d47f295d6660299fcc21e0dd97 192 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 119 181 8.0E-23 T 17-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 VI35_19945 c971a9d47f295d6660299fcc21e0dd97 192 Gene3D G3DSA:3.30.300.130 101 189 2.9E-19 T 17-10-2018 IPR034904 Fe-S cluster assembly domain superfamily VI35_19945 c971a9d47f295d6660299fcc21e0dd97 192 Gene3D G3DSA:2.60.300.12 1 98 5.7E-14 T 17-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 VI35_19945 c971a9d47f295d6660299fcc21e0dd97 192 SUPERFAMILY SSF117916 95 184 2.4E-22 T 17-10-2018 IPR034904 Fe-S cluster assembly domain superfamily VI35_19945 c971a9d47f295d6660299fcc21e0dd97 192 Pfam PF01521 Iron-sulphur cluster biosynthesis 2 99 2.5E-10 T 17-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 VI35_06825 a9a48c8f401d49021855d324d775deee 244 SUPERFAMILY SSF54862 56 200 2.83E-25 T 17-10-2018 VI35_06825 a9a48c8f401d49021855d324d775deee 244 Pfam PF12838 4Fe-4S dicluster domain 56 111 2.0E-7 T 17-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VI35_06825 a9a48c8f401d49021855d324d775deee 244 Gene3D G3DSA:3.30.70.20 130 215 9.5E-9 T 17-10-2018 VI35_06825 a9a48c8f401d49021855d324d775deee 244 TIGRFAM TIGR00397 mauM_napG: MauM/NapG family ferredoxin-type protein 4 213 3.6E-75 T 17-10-2018 IPR004494 MauM/NapG ferredoxin-type protein VI35_06825 a9a48c8f401d49021855d324d775deee 244 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 57 68 - T 17-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VI35_06825 a9a48c8f401d49021855d324d775deee 244 Gene3D G3DSA:3.30.70.20 50 128 2.7E-9 T 17-10-2018 VI35_06825 a9a48c8f401d49021855d324d775deee 244 Pfam PF12800 4Fe-4S binding domain 133 151 0.026 T 17-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VI35_06825 a9a48c8f401d49021855d324d775deee 244 Pfam PF12800 4Fe-4S binding domain 180 192 0.22 T 17-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VI35_04010 3ab05b80097d9d70f9816fdb8b9f5aca 143 Gene3D G3DSA:1.10.1660.10 1 119 3.5E-28 T 17-10-2018 VI35_04010 3ab05b80097d9d70f9816fdb8b9f5aca 143 SMART SM00422 1 69 5.5E-17 T 17-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VI35_04010 3ab05b80097d9d70f9816fdb8b9f5aca 143 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 1.9E-9 T 17-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VI35_04010 3ab05b80097d9d70f9816fdb8b9f5aca 143 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 1.9E-9 T 17-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VI35_04010 3ab05b80097d9d70f9816fdb8b9f5aca 143 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 36 56 1.9E-9 T 17-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VI35_04010 3ab05b80097d9d70f9816fdb8b9f5aca 143 Pfam PF13411 MerR HTH family regulatory protein 2 61 1.3E-12 T 17-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VI35_04010 3ab05b80097d9d70f9816fdb8b9f5aca 143 SUPERFAMILY SSF46955 1 109 2.67E-24 T 17-10-2018 IPR009061 Putative DNA-binding domain superfamily VI35_08365 ed00e46fe4a58f6ce02452367da16e0d 239 SMART SM00671 119 151 0.033 T 17-10-2018 IPR006597 Sel1-like repeat VI35_08365 ed00e46fe4a58f6ce02452367da16e0d 239 SMART SM00671 83 118 1.1E-4 T 17-10-2018 IPR006597 Sel1-like repeat VI35_08365 ed00e46fe4a58f6ce02452367da16e0d 239 SMART SM00671 42 73 7.8 T 17-10-2018 IPR006597 Sel1-like repeat VI35_08365 ed00e46fe4a58f6ce02452367da16e0d 239 Pfam PF08238 Sel1 repeat 85 118 1.5E-7 T 17-10-2018 IPR006597 Sel1-like repeat VI35_08365 ed00e46fe4a58f6ce02452367da16e0d 239 Pfam PF08238 Sel1 repeat 46 71 9.0 T 17-10-2018 IPR006597 Sel1-like repeat VI35_08365 ed00e46fe4a58f6ce02452367da16e0d 239 Pfam PF08238 Sel1 repeat 121 151 0.0067 T 17-10-2018 IPR006597 Sel1-like repeat VI35_08365 ed00e46fe4a58f6ce02452367da16e0d 239 SUPERFAMILY SSF81901 32 156 8.5E-19 T 17-10-2018 VI35_08365 ed00e46fe4a58f6ce02452367da16e0d 239 Gene3D G3DSA:1.25.40.10 26 172 2.1E-23 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_01640 08e3f329be84b885fcfbe50322e95251 240 SUPERFAMILY SSF52172 4 126 1.71E-43 T 17-10-2018 IPR011006 CheY-like superfamily VI35_01640 08e3f329be84b885fcfbe50322e95251 240 Gene3D G3DSA:1.10.10.10 131 239 2.7E-32 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_01640 08e3f329be84b885fcfbe50322e95251 240 SUPERFAMILY SSF46894 138 235 5.95E-25 T 17-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VI35_01640 08e3f329be84b885fcfbe50322e95251 240 SMART SM00448 6 116 7.3E-48 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_01640 08e3f329be84b885fcfbe50322e95251 240 SMART SM00862 157 233 1.9E-24 T 17-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VI35_01640 08e3f329be84b885fcfbe50322e95251 240 Gene3D G3DSA:3.40.50.2300 1 128 2.9E-41 T 17-10-2018 VI35_01640 08e3f329be84b885fcfbe50322e95251 240 Pfam PF00486 Transcriptional regulatory protein, C terminal 160 233 1.0E-22 T 17-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VI35_01640 08e3f329be84b885fcfbe50322e95251 240 Pfam PF00072 Response regulator receiver domain 8 117 1.3E-32 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_04655 73bcfa3fd4059928f07d9da42514a441 182 Gene3D G3DSA:2.160.10.10 1 180 7.7E-62 T 17-10-2018 VI35_04655 73bcfa3fd4059928f07d9da42514a441 182 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 136 164 - T 17-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 VI35_04655 73bcfa3fd4059928f07d9da42514a441 182 SUPERFAMILY SSF51161 2 178 1.8E-47 T 17-10-2018 IPR011004 Trimeric LpxA-like superfamily VI35_04655 73bcfa3fd4059928f07d9da42514a441 182 SMART SM01266 4 56 5.2E-14 T 17-10-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 VI35_04655 73bcfa3fd4059928f07d9da42514a441 182 Pfam PF12464 Maltose acetyltransferase 6 53 4.1E-10 T 17-10-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 VI35_04655 73bcfa3fd4059928f07d9da42514a441 182 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 128 162 1.4E-9 T 17-10-2018 IPR001451 Hexapeptide repeat VI35_11360 79aba9483606c1323f3dac5ef1546293 323 Gene3D G3DSA:3.40.50.460 146 255 3.6E-118 T 17-10-2018 VI35_11360 79aba9483606c1323f3dac5ef1546293 323 PIRSF PIRSF000532 4 322 4.7E-128 T 17-10-2018 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 VI35_11360 79aba9483606c1323f3dac5ef1546293 323 Hamap MF_00339 ATP-dependent 6-phosphofructokinase [pfkA]. 5 323 47.381 T 17-10-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 VI35_11360 79aba9483606c1323f3dac5ef1546293 323 ProSitePatterns PS00433 Phosphofructokinase signature. 247 265 - T 17-10-2018 IPR015912 Phosphofructokinase, conserved site GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VI35_11360 79aba9483606c1323f3dac5ef1546293 323 Pfam PF00365 Phosphofructokinase 7 278 5.3E-110 T 17-10-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VI35_11360 79aba9483606c1323f3dac5ef1546293 323 SUPERFAMILY SSF53784 3 314 2.75E-117 T 17-10-2018 IPR035966 Phosphofructokinase superfamily GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VI35_11360 79aba9483606c1323f3dac5ef1546293 323 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 10 29 1.3E-86 T 17-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VI35_11360 79aba9483606c1323f3dac5ef1546293 323 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 97 113 1.3E-86 T 17-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VI35_11360 79aba9483606c1323f3dac5ef1546293 323 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 162 178 1.3E-86 T 17-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VI35_11360 79aba9483606c1323f3dac5ef1546293 323 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 180 197 1.3E-86 T 17-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VI35_11360 79aba9483606c1323f3dac5ef1546293 323 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 142 160 1.3E-86 T 17-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VI35_11360 79aba9483606c1323f3dac5ef1546293 323 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 124 141 1.3E-86 T 17-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VI35_11360 79aba9483606c1323f3dac5ef1546293 323 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 216 228 1.3E-86 T 17-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VI35_11360 79aba9483606c1323f3dac5ef1546293 323 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 35 48 1.3E-86 T 17-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VI35_11360 79aba9483606c1323f3dac5ef1546293 323 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 243 265 1.3E-86 T 17-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VI35_11360 79aba9483606c1323f3dac5ef1546293 323 TIGRFAM TIGR02482 PFKA_ATP: 6-phosphofructokinase 7 303 6.0E-131 T 17-10-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 VI35_11360 79aba9483606c1323f3dac5ef1546293 323 Gene3D G3DSA:3.40.50.450 7 290 3.6E-118 T 17-10-2018 VI35_03850 732c79c982ecef93d58d9716405a2798 501 Gene3D G3DSA:3.90.1150.170 56 492 2.8E-95 T 17-10-2018 VI35_03850 732c79c982ecef93d58d9716405a2798 501 SUPERFAMILY SSF53383 31 494 2.54E-100 T 17-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VI35_03850 732c79c982ecef93d58d9716405a2798 501 Gene3D G3DSA:3.40.640.10 103 357 2.8E-95 T 17-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VI35_03850 732c79c982ecef93d58d9716405a2798 501 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 65 412 8.5E-40 T 17-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 VI35_19305 36907ee6bf4c9d20b74fc7bc49ffd1b7 173 SUPERFAMILY SSF55729 2 146 4.58E-32 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_19305 36907ee6bf4c9d20b74fc7bc49ffd1b7 173 Pfam PF13302 Acetyltransferase (GNAT) domain 6 145 2.6E-23 T 17-10-2018 IPR000182 GNAT domain VI35_19305 36907ee6bf4c9d20b74fc7bc49ffd1b7 173 Gene3D G3DSA:3.40.630.30 1 158 7.4E-37 T 17-10-2018 VI35_16460 1125092314d1af03d0f3a02b7d48f026 280 Gene3D G3DSA:1.10.530.10 142 272 1.4E-34 T 17-10-2018 VI35_16460 1125092314d1af03d0f3a02b7d48f026 280 Gene3D G3DSA:1.25.40.10 24 114 9.3E-9 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_16460 1125092314d1af03d0f3a02b7d48f026 280 SUPERFAMILY SSF53955 130 265 1.6E-39 T 17-10-2018 IPR023346 Lysozyme-like domain superfamily VI35_16460 1125092314d1af03d0f3a02b7d48f026 280 SUPERFAMILY SSF81901 38 103 7.59E-10 T 17-10-2018 VI35_16460 1125092314d1af03d0f3a02b7d48f026 280 Pfam PF01464 Transglycosylase SLT domain 150 253 1.6E-22 T 17-10-2018 IPR008258 Transglycosylase SLT domain 1 VI35_00510 7d47e8b6a79f4d7e4c9afea29fe10c93 257 Gene3D G3DSA:3.30.230.70 29 257 1.8E-64 T 17-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VI35_00510 7d47e8b6a79f4d7e4c9afea29fe10c93 257 SUPERFAMILY SSF55666 173 256 1.44E-25 T 17-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VI35_00510 7d47e8b6a79f4d7e4c9afea29fe10c93 257 ProSitePatterns PS01277 Ribonuclease PH signature. 136 149 - T 17-10-2018 IPR018336 Ribonuclease PH, conserved site VI35_00510 7d47e8b6a79f4d7e4c9afea29fe10c93 257 Pfam PF01138 3' exoribonuclease family, domain 1 30 160 3.2E-24 T 17-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VI35_00510 7d47e8b6a79f4d7e4c9afea29fe10c93 257 SUPERFAMILY SSF54211 22 201 1.01E-44 T 17-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VI35_00510 7d47e8b6a79f4d7e4c9afea29fe10c93 257 Pfam PF03725 3' exoribonuclease family, domain 2 178 242 1.2E-12 T 17-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VI35_00510 7d47e8b6a79f4d7e4c9afea29fe10c93 257 Hamap MF_00564 Ribonuclease PH [rph]. 31 257 44.614 T 17-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 VI35_00510 7d47e8b6a79f4d7e4c9afea29fe10c93 257 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 22 256 7.7E-114 T 17-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 VI35_15710 7e889c067705daa620485209f3a3a424 407 Hamap MF_00430 Na(+)-translocating NADH-quinone reductase subunit F [nqrF]. 1 407 62.326 T 17-10-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 VI35_15710 7e889c067705daa620485209f3a3a424 407 Gene3D G3DSA:3.40.50.80 275 393 3.5E-32 T 17-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VI35_15710 7e889c067705daa620485209f3a3a424 407 Gene3D G3DSA:3.10.20.30 34 125 7.2E-31 T 17-10-2018 IPR012675 Beta-grasp domain superfamily VI35_15710 7e889c067705daa620485209f3a3a424 407 SUPERFAMILY SSF63380 105 272 6.49E-35 T 17-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VI35_15710 7e889c067705daa620485209f3a3a424 407 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 44 114 1.7E-9 T 17-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 VI35_15710 7e889c067705daa620485209f3a3a424 407 Pfam PF00970 Oxidoreductase FAD-binding domain 204 266 1.2E-9 T 17-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 VI35_15710 7e889c067705daa620485209f3a3a424 407 Pfam PF00175 Oxidoreductase NAD-binding domain 277 386 2.3E-17 T 17-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 VI35_15710 7e889c067705daa620485209f3a3a424 407 PIRSF PIRSF000044 1 407 7.2E-219 T 17-10-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 VI35_15710 7e889c067705daa620485209f3a3a424 407 SUPERFAMILY SSF52343 257 402 3.4E-36 T 17-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VI35_15710 7e889c067705daa620485209f3a3a424 407 Gene3D G3DSA:2.40.30.10 126 264 2.1E-50 T 17-10-2018 VI35_15710 7e889c067705daa620485209f3a3a424 407 SUPERFAMILY SSF54292 40 124 2.28E-21 T 17-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 VI35_15710 7e889c067705daa620485209f3a3a424 407 TIGRFAM TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit 3 407 4.5E-226 T 17-10-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 VI35_05995 81e037aef884b2f55e6fdcb2fda3e82a 302 Gene3D G3DSA:3.30.1330.60 106 259 2.6E-39 T 17-10-2018 IPR036737 OmpA-like domain superfamily VI35_05995 81e037aef884b2f55e6fdcb2fda3e82a 302 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 8 58 1.6E-16 T 17-10-2018 IPR025713 Motility protein B, N-terminal domain VI35_05995 81e037aef884b2f55e6fdcb2fda3e82a 302 SUPERFAMILY SSF103088 125 253 1.83E-29 T 17-10-2018 IPR036737 OmpA-like domain superfamily VI35_05995 81e037aef884b2f55e6fdcb2fda3e82a 302 Pfam PF00691 OmpA family 150 248 1.5E-18 T 17-10-2018 IPR006665 OmpA-like domain VI35_06340 c3f6170743c17d4ad6c5e6c99788b0ef 466 Gene3D G3DSA:2.40.50.140 1 105 6.5E-19 T 17-10-2018 VI35_06340 c3f6170743c17d4ad6c5e6c99788b0ef 466 Hamap MF_00534 Asparagine--tRNA ligase [asnS]. 4 466 45.961 T 17-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 VI35_06340 c3f6170743c17d4ad6c5e6c99788b0ef 466 Gene3D G3DSA:3.30.930.10 109 464 1.7E-108 T 17-10-2018 VI35_06340 c3f6170743c17d4ad6c5e6c99788b0ef 466 TIGRFAM TIGR00457 asnS: asparagine--tRNA ligase 4 466 4.3E-204 T 17-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 VI35_06340 c3f6170743c17d4ad6c5e6c99788b0ef 466 SUPERFAMILY SSF55681 96 463 2.07E-97 T 17-10-2018 VI35_06340 c3f6170743c17d4ad6c5e6c99788b0ef 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 208 220 4.1E-14 T 17-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_06340 c3f6170743c17d4ad6c5e6c99788b0ef 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 381 397 4.1E-14 T 17-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_06340 c3f6170743c17d4ad6c5e6c99788b0ef 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 224 237 4.1E-14 T 17-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_06340 c3f6170743c17d4ad6c5e6c99788b0ef 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 421 435 4.1E-14 T 17-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_06340 c3f6170743c17d4ad6c5e6c99788b0ef 466 Pfam PF01336 OB-fold nucleic acid binding domain 21 99 6.3E-10 T 17-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 VI35_06340 c3f6170743c17d4ad6c5e6c99788b0ef 466 SUPERFAMILY SSF50249 15 101 2.57E-15 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_06340 c3f6170743c17d4ad6c5e6c99788b0ef 466 Pfam PF00152 tRNA synthetases class II (D, K and N) 119 460 1.0E-79 T 17-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_00560 1cb18f7c270a91b7691fb15c3670f222 211 Gene3D G3DSA:3.40.50.850 4 205 3.9E-39 T 17-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 VI35_00560 1cb18f7c270a91b7691fb15c3670f222 211 SUPERFAMILY SSF52499 7 199 1.44E-35 T 17-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 VI35_00560 1cb18f7c270a91b7691fb15c3670f222 211 Pfam PF00857 Isochorismatase family 7 200 7.2E-25 T 17-10-2018 IPR000868 Isochorismatase-like GO:0003824 VI35_02580 bafb529ff2f1e046e6036956cd903c26 184 PIRSF PIRSF005413 1 184 3.5E-62 T 17-10-2018 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_02580 bafb529ff2f1e046e6036956cd903c26 184 Gene3D G3DSA:2.60.370.10 51 184 4.1E-40 T 17-10-2018 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_02580 bafb529ff2f1e046e6036956cd903c26 184 SUPERFAMILY SSF110111 54 173 2.09E-41 T 17-10-2018 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_02580 bafb529ff2f1e046e6036956cd903c26 184 Pfam PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 27 170 6.4E-48 T 17-10-2018 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_09885 9eabb9c397a1d3bc7164535fd2a21af5 413 Pfam PF02687 FtsX-like permease family 299 403 2.0E-10 T 17-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 VI35_09885 9eabb9c397a1d3bc7164535fd2a21af5 413 Pfam PF12704 MacB-like periplasmic core domain 29 200 2.9E-13 T 17-10-2018 IPR025857 MacB-like periplasmic core domain VI35_09885 9eabb9c397a1d3bc7164535fd2a21af5 413 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 4 411 1.1E-137 T 17-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 VI35_09435 da7d67d1046fb38d435dc94d92d26cfc 428 PIRSF PIRSF001369 37 428 2.4E-170 T 17-10-2018 IPR024176 Citrate synthase, bacterial-type VI35_09435 da7d67d1046fb38d435dc94d92d26cfc 428 Gene3D G3DSA:1.10.580.10 57 411 2.9E-147 T 17-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 VI35_09435 da7d67d1046fb38d435dc94d92d26cfc 428 Pfam PF00285 Citrate synthase, C-terminal domain 46 411 5.7E-133 T 17-10-2018 IPR002020 Citrate synthase GO:0046912 VI35_09435 da7d67d1046fb38d435dc94d92d26cfc 428 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 15 421 9.7E-235 T 17-10-2018 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 VI35_09435 da7d67d1046fb38d435dc94d92d26cfc 428 PRINTS PR00143 Citrate synthase signature 165 178 2.0E-55 T 17-10-2018 IPR002020 Citrate synthase GO:0046912 VI35_09435 da7d67d1046fb38d435dc94d92d26cfc 428 PRINTS PR00143 Citrate synthase signature 241 269 2.0E-55 T 17-10-2018 IPR002020 Citrate synthase GO:0046912 VI35_09435 da7d67d1046fb38d435dc94d92d26cfc 428 PRINTS PR00143 Citrate synthase signature 359 375 2.0E-55 T 17-10-2018 IPR002020 Citrate synthase GO:0046912 VI35_09435 da7d67d1046fb38d435dc94d92d26cfc 428 PRINTS PR00143 Citrate synthase signature 379 393 2.0E-55 T 17-10-2018 IPR002020 Citrate synthase GO:0046912 VI35_09435 da7d67d1046fb38d435dc94d92d26cfc 428 PRINTS PR00143 Citrate synthase signature 296 316 2.0E-55 T 17-10-2018 IPR002020 Citrate synthase GO:0046912 VI35_09435 da7d67d1046fb38d435dc94d92d26cfc 428 PRINTS PR00143 Citrate synthase signature 219 234 2.0E-55 T 17-10-2018 IPR002020 Citrate synthase GO:0046912 VI35_09435 da7d67d1046fb38d435dc94d92d26cfc 428 Gene3D G3DSA:2.20.28.60 1 50 1.3E-25 T 17-10-2018 VI35_09435 da7d67d1046fb38d435dc94d92d26cfc 428 Gene3D G3DSA:1.10.230.10 268 376 2.9E-147 T 17-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain VI35_09435 da7d67d1046fb38d435dc94d92d26cfc 428 SUPERFAMILY SSF48256 7 428 6.15E-169 T 17-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 VI35_09435 da7d67d1046fb38d435dc94d92d26cfc 428 ProSitePatterns PS00480 Citrate synthase signature. 303 315 - T 17-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 VI35_17785 cb8839ea4993f6962cc73a315c35d7a7 797 SUPERFAMILY SSF50249 139 237 9.33E-14 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_17785 cb8839ea4993f6962cc73a315c35d7a7 797 SMART SM00357 87 146 5.9E-10 T 17-10-2018 IPR011129 Cold shock domain GO:0003676 VI35_17785 cb8839ea4993f6962cc73a315c35d7a7 797 TIGRFAM TIGR02063 RNase_R: ribonuclease R 20 729 4.1E-270 T 17-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 VI35_17785 cb8839ea4993f6962cc73a315c35d7a7 797 SUPERFAMILY SSF50249 68 147 6.43E-17 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_17785 cb8839ea4993f6962cc73a315c35d7a7 797 Pfam PF00773 RNB domain 261 585 5.5E-104 T 17-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 VI35_17785 cb8839ea4993f6962cc73a315c35d7a7 797 SMART SM00316 645 728 1.3E-14 T 17-10-2018 IPR022967 RNA-binding domain, S1 VI35_17785 cb8839ea4993f6962cc73a315c35d7a7 797 Pfam PF00575 S1 RNA binding domain 645 725 2.8E-13 T 17-10-2018 IPR003029 S1 domain GO:0003676 VI35_17785 cb8839ea4993f6962cc73a315c35d7a7 797 Gene3D G3DSA:2.40.50.140 75 149 3.7E-15 T 17-10-2018 VI35_17785 cb8839ea4993f6962cc73a315c35d7a7 797 SUPERFAMILY SSF50249 221 645 1.31E-143 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_17785 cb8839ea4993f6962cc73a315c35d7a7 797 SMART SM00955 261 589 6.0E-184 T 17-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 VI35_17785 cb8839ea4993f6962cc73a315c35d7a7 797 Pfam PF08461 Ribonuclease R winged-helix domain 23 82 5.4E-13 T 17-10-2018 IPR013668 Ribonuclease R winged-helix domain VI35_17785 cb8839ea4993f6962cc73a315c35d7a7 797 Pfam PF08206 Ribonuclease B OB domain 88 144 4.4E-19 T 17-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain VI35_17785 cb8839ea4993f6962cc73a315c35d7a7 797 Hamap MF_01895 Ribonuclease R [rnr]. 39 728 57.0 T 17-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 VI35_17785 cb8839ea4993f6962cc73a315c35d7a7 797 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 68 728 3.0E-251 T 17-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 VI35_17785 cb8839ea4993f6962cc73a315c35d7a7 797 Gene3D G3DSA:2.40.50.140 648 791 3.8E-25 T 17-10-2018 VI35_17785 cb8839ea4993f6962cc73a315c35d7a7 797 ProSitePatterns PS01175 Ribonuclease II family signature. 556 580 - T 17-10-2018 IPR022966 Ribonuclease II/R, conserved site VI35_17785 cb8839ea4993f6962cc73a315c35d7a7 797 SUPERFAMILY SSF50249 646 740 3.17E-22 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_04080 c43d1ae2957845969360ff4b7d221008 236 SUPERFAMILY SSF52540 6 225 3.96E-66 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_04080 c43d1ae2957845969360ff4b7d221008 236 SMART SM00382 35 221 4.9E-12 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_04080 c43d1ae2957845969360ff4b7d221008 236 Pfam PF00005 ABC transporter 26 172 3.6E-32 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_04080 c43d1ae2957845969360ff4b7d221008 236 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_04080 c43d1ae2957845969360ff4b7d221008 236 Gene3D G3DSA:3.40.50.300 4 233 6.5E-68 T 17-10-2018 VI35_15960 1c4836b317e5a27f1785801d66f8bd47 390 PIRSF PIRSF001500 1 378 4.9E-127 T 17-10-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 VI35_15960 1c4836b317e5a27f1785801d66f8bd47 390 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 323 330 - T 17-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 VI35_15960 1c4836b317e5a27f1785801d66f8bd47 390 Gene3D G3DSA:3.30.70.260 290 377 5.5E-25 T 17-10-2018 VI35_15960 1c4836b317e5a27f1785801d66f8bd47 390 Pfam PF01817 Chorismate mutase type II 8 86 9.0E-16 T 17-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 VI35_15960 1c4836b317e5a27f1785801d66f8bd47 390 SUPERFAMILY SSF53850 103 287 5.86E-50 T 17-10-2018 VI35_15960 1c4836b317e5a27f1785801d66f8bd47 390 Pfam PF00800 Prephenate dehydratase 104 285 2.9E-54 T 17-10-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 VI35_15960 1c4836b317e5a27f1785801d66f8bd47 390 SUPERFAMILY SSF48600 3 90 4.94E-20 T 17-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 VI35_15960 1c4836b317e5a27f1785801d66f8bd47 390 SMART SM00830 8 88 1.1E-23 T 17-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 VI35_15960 1c4836b317e5a27f1785801d66f8bd47 390 Gene3D G3DSA:3.40.190.10 187 272 2.4E-50 T 17-10-2018 VI35_15960 1c4836b317e5a27f1785801d66f8bd47 390 Gene3D G3DSA:1.20.59.10 1 105 1.4E-31 T 17-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 VI35_15960 1c4836b317e5a27f1785801d66f8bd47 390 SUPERFAMILY SSF55021 278 375 1.14E-24 T 17-10-2018 VI35_15960 1c4836b317e5a27f1785801d66f8bd47 390 Gene3D G3DSA:3.40.190.10 106 279 2.4E-50 T 17-10-2018 VI35_15960 1c4836b317e5a27f1785801d66f8bd47 390 TIGRFAM TIGR01797 CM_P_1: chorismate mutase 5 86 3.2E-27 T 17-10-2018 IPR010952 Chorismate mutase, gammaproteobacteria GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626 VI35_03205 6f3774c1733015b93e2a66dc20dca4ad 359 SUPERFAMILY SSF51569 5 357 7.14E-130 T 17-10-2018 VI35_03205 6f3774c1733015b93e2a66dc20dca4ad 359 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 101 112 - T 17-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 VI35_03205 6f3774c1733015b93e2a66dc20dca4ad 359 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 15 357 2.5E-112 T 17-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 VI35_03205 6f3774c1733015b93e2a66dc20dca4ad 359 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 172 183 - T 17-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 VI35_03205 6f3774c1733015b93e2a66dc20dca4ad 359 PIRSF PIRSF001359 14 359 3.2E-96 T 17-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 VI35_03205 6f3774c1733015b93e2a66dc20dca4ad 359 Pfam PF01116 Fructose-bisphosphate aldolase class-II 18 355 7.3E-89 T 17-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 VI35_03205 6f3774c1733015b93e2a66dc20dca4ad 359 TIGRFAM TIGR01520 FruBisAldo_II_A: fructose-bisphosphate aldolase, class II 5 358 9.7E-184 T 17-10-2018 IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 VI35_03205 6f3774c1733015b93e2a66dc20dca4ad 359 Gene3D G3DSA:3.20.20.70 3 359 2.4E-147 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_17745 069af95e95d0e63c7a36720777bcb330 76 ProSitePatterns PS00057 Ribosomal protein S18 signature. 21 44 - T 17-10-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_17745 069af95e95d0e63c7a36720777bcb330 76 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 2 73 20.898 T 17-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_17745 069af95e95d0e63c7a36720777bcb330 76 Pfam PF01084 Ribosomal protein S18 18 68 2.0E-25 T 17-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_17745 069af95e95d0e63c7a36720777bcb330 76 PRINTS PR00974 Ribosomal protein S18 family signature 28 38 1.6E-18 T 17-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_17745 069af95e95d0e63c7a36720777bcb330 76 PRINTS PR00974 Ribosomal protein S18 family signature 46 60 1.6E-18 T 17-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_17745 069af95e95d0e63c7a36720777bcb330 76 PRINTS PR00974 Ribosomal protein S18 family signature 60 70 1.6E-18 T 17-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_17745 069af95e95d0e63c7a36720777bcb330 76 PRINTS PR00974 Ribosomal protein S18 family signature 38 45 1.6E-18 T 17-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_17745 069af95e95d0e63c7a36720777bcb330 76 TIGRFAM TIGR00165 S18: ribosomal protein bS18 4 72 3.0E-37 T 17-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_17745 069af95e95d0e63c7a36720777bcb330 76 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 21 72 4.0E-22 T 17-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_17745 069af95e95d0e63c7a36720777bcb330 76 SUPERFAMILY SSF46911 3 72 1.57E-28 T 17-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_17745 069af95e95d0e63c7a36720777bcb330 76 Gene3D G3DSA:4.10.640.10 1 75 4.3E-28 T 17-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_09755 0e16093e398cb6513a4196c77555dd2d 162 PRINTS PR01021 OMPA domain signature 89 104 1.1E-11 T 17-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VI35_09755 0e16093e398cb6513a4196c77555dd2d 162 PRINTS PR01021 OMPA domain signature 59 81 1.1E-11 T 17-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VI35_09755 0e16093e398cb6513a4196c77555dd2d 162 PRINTS PR01021 OMPA domain signature 104 120 1.1E-11 T 17-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VI35_09755 0e16093e398cb6513a4196c77555dd2d 162 SUPERFAMILY SSF103088 45 159 4.32E-32 T 17-10-2018 IPR036737 OmpA-like domain superfamily VI35_09755 0e16093e398cb6513a4196c77555dd2d 162 Pfam PF00691 OmpA family 59 153 2.7E-19 T 17-10-2018 IPR006665 OmpA-like domain VI35_09755 0e16093e398cb6513a4196c77555dd2d 162 Gene3D G3DSA:3.30.1330.60 25 160 9.3E-42 T 17-10-2018 IPR036737 OmpA-like domain superfamily VI35_09755 0e16093e398cb6513a4196c77555dd2d 162 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 122 141 4.4E-10 T 17-10-2018 VI35_09755 0e16093e398cb6513a4196c77555dd2d 162 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 142 162 4.4E-10 T 17-10-2018 VI35_09755 0e16093e398cb6513a4196c77555dd2d 162 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 104 121 4.4E-10 T 17-10-2018 VI35_07465 c2bfe76251f96039e1d3fa6de6eb4115 251 Pfam PF02348 Cytidylyltransferase 4 173 1.4E-29 T 17-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 VI35_07465 c2bfe76251f96039e1d3fa6de6eb4115 251 Gene3D G3DSA:3.90.550.10 2 207 6.9E-35 T 17-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VI35_07465 c2bfe76251f96039e1d3fa6de6eb4115 251 SUPERFAMILY SSF53448 1 203 2.32E-30 T 17-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VI35_00340 23fae71a2909470fdd21d99d38f748ef 163 Gene3D G3DSA:3.30.70.330 56 160 1.8E-26 T 17-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily VI35_00340 23fae71a2909470fdd21d99d38f748ef 163 SUPERFAMILY SSF54928 61 153 7.52E-26 T 17-10-2018 IPR035979 RNA-binding domain superfamily GO:0003676 VI35_00340 23fae71a2909470fdd21d99d38f748ef 163 SMART SM00360 73 145 3.0E-21 T 17-10-2018 IPR000504 RNA recognition motif domain GO:0003676 VI35_00340 23fae71a2909470fdd21d99d38f748ef 163 Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 143 1.2E-18 T 17-10-2018 IPR000504 RNA recognition motif domain GO:0003676 VI35_01470 31af5999fabeb183c3e1333d1c27e4f1 458 SUPERFAMILY SSF48317 169 337 1.7E-23 T 17-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily VI35_01470 31af5999fabeb183c3e1333d1c27e4f1 458 SMART SM00014 222 333 1.8E-14 T 17-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase VI35_01470 31af5999fabeb183c3e1333d1c27e4f1 458 Gene3D G3DSA:3.90.79.10 18 154 1.2E-18 T 17-10-2018 VI35_01470 31af5999fabeb183c3e1333d1c27e4f1 458 Gene3D G3DSA:1.20.144.10 250 346 5.4E-14 T 17-10-2018 VI35_01470 31af5999fabeb183c3e1333d1c27e4f1 458 PRINTS PR00502 NUDIX hydrolase family signature 49 63 3.5E-6 T 17-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 VI35_01470 31af5999fabeb183c3e1333d1c27e4f1 458 PRINTS PR00502 NUDIX hydrolase family signature 63 78 3.5E-6 T 17-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 VI35_01470 31af5999fabeb183c3e1333d1c27e4f1 458 ProSitePatterns PS00893 Nudix box signature. 54 75 - T 17-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 VI35_01470 31af5999fabeb183c3e1333d1c27e4f1 458 Pfam PF00293 NUDIX domain 26 94 1.9E-13 T 17-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 VI35_01470 31af5999fabeb183c3e1333d1c27e4f1 458 SUPERFAMILY SSF55811 25 149 1.49E-19 T 17-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VI35_01470 31af5999fabeb183c3e1333d1c27e4f1 458 Pfam PF01569 PAP2 superfamily 223 331 7.2E-21 T 17-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase VI35_03775 aac2dffb01cb034c53891421f8733cdc 321 Gene3D G3DSA:3.20.20.70 6 248 3.0E-78 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_03775 aac2dffb01cb034c53891421f8733cdc 321 Pfam PF01207 Dihydrouridine synthase (Dus) 13 314 6.8E-106 T 17-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 VI35_03775 aac2dffb01cb034c53891421f8733cdc 321 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 3 317 1.3E-126 T 17-10-2018 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 VI35_03775 aac2dffb01cb034c53891421f8733cdc 321 PIRSF PIRSF006621 1 320 1.1E-103 T 17-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 VI35_03775 aac2dffb01cb034c53891421f8733cdc 321 Hamap MF_02042 tRNA-dihydrouridine synthase B [dusB]. 1 321 49.535 T 17-10-2018 IPR032887 tRNA-dihydrouridine synthase B GO:0002943|GO:0017150 VI35_03775 aac2dffb01cb034c53891421f8733cdc 321 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 94 112 - T 17-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 VI35_03775 aac2dffb01cb034c53891421f8733cdc 321 SUPERFAMILY SSF51395 11 318 2.01E-90 T 17-10-2018 VI35_00850 84492a579015e1269d41077020fefaa5 270 Pfam PF01226 Formate/nitrite transporter 26 246 3.5E-61 T 17-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 VI35_00850 84492a579015e1269d41077020fefaa5 270 ProSitePatterns PS01005 Formate and nitrite transporters signature 1. 73 82 - T 17-10-2018 IPR024002 Formate/nitrite transporter, conserved site VI35_00850 84492a579015e1269d41077020fefaa5 270 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 156 166 - T 17-10-2018 IPR024002 Formate/nitrite transporter, conserved site VI35_00850 84492a579015e1269d41077020fefaa5 270 TIGRFAM TIGR00790 fnt: formate/nitrite transporter 21 249 1.2E-79 T 17-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 VI35_00850 84492a579015e1269d41077020fefaa5 270 Gene3D G3DSA:1.20.1080.10 1 258 3.6E-90 T 17-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 VI35_10830 fd4e8c66f2177416589713a99bfe2656 213 SUPERFAMILY SSF52540 1 203 1.25E-48 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_10830 fd4e8c66f2177416589713a99bfe2656 213 ProSitePatterns PS01331 Thymidylate kinase signature. 93 105 - T 17-10-2018 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 VI35_10830 fd4e8c66f2177416589713a99bfe2656 213 Hamap MF_00165 Thymidylate kinase [tmk]. 3 204 27.371 T 17-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 VI35_10830 fd4e8c66f2177416589713a99bfe2656 213 Gene3D G3DSA:3.40.50.300 2 206 2.9E-58 T 17-10-2018 VI35_10830 fd4e8c66f2177416589713a99bfe2656 213 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 2 196 1.5E-58 T 17-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 VI35_10830 fd4e8c66f2177416589713a99bfe2656 213 Pfam PF02223 Thymidylate kinase 7 196 4.7E-53 T 17-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 VI35_11635 72b86f0923fcd40036f39b0c999fbdce 640 Gene3D G3DSA:1.10.10.10 493 635 3.4E-10 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_11635 72b86f0923fcd40036f39b0c999fbdce 640 Gene3D G3DSA:3.40.50.300 198 380 2.9E-42 T 17-10-2018 VI35_11635 72b86f0923fcd40036f39b0c999fbdce 640 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 5 345 1.2E-108 T 17-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 VI35_11635 72b86f0923fcd40036f39b0c999fbdce 640 Pfam PF00270 DEAD/DEAH box helicase 17 175 3.6E-15 T 17-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VI35_11635 72b86f0923fcd40036f39b0c999fbdce 640 SMART SM00487 11 207 2.7E-26 T 17-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VI35_11635 72b86f0923fcd40036f39b0c999fbdce 640 SMART SM00490 241 322 2.8E-26 T 17-10-2018 IPR001650 Helicase, C-terminal VI35_11635 72b86f0923fcd40036f39b0c999fbdce 640 Gene3D G3DSA:3.40.50.300 1 197 5.1E-67 T 17-10-2018 VI35_11635 72b86f0923fcd40036f39b0c999fbdce 640 Pfam PF00271 Helicase conserved C-terminal domain 220 321 6.7E-17 T 17-10-2018 IPR001650 Helicase, C-terminal VI35_11635 72b86f0923fcd40036f39b0c999fbdce 640 Pfam PF16124 RecQ zinc-binding 508 555 5.3E-9 T 17-10-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain VI35_11635 72b86f0923fcd40036f39b0c999fbdce 640 SUPERFAMILY SSF52540 56 336 3.6E-54 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_11635 72b86f0923fcd40036f39b0c999fbdce 640 ProSitePatterns PS00690 DEAH-box subfamily ATP-dependent helicases signature. 130 139 - T 17-10-2018 IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site VI35_19800 ce4915bb1bc01c335e890fde6c334166 59 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 5 58 9.9E-26 T 17-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_19800 ce4915bb1bc01c335e890fde6c334166 59 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 2 59 21.548 T 17-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_19800 ce4915bb1bc01c335e890fde6c334166 59 ProSitePatterns PS00634 Ribosomal protein L30 signature. 23 55 - T 17-10-2018 IPR018038 Ribosomal protein L30, conserved site VI35_19800 ce4915bb1bc01c335e890fde6c334166 59 SUPERFAMILY SSF55129 3 58 7.46E-22 T 17-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily VI35_19800 ce4915bb1bc01c335e890fde6c334166 59 PIRSF PIRSF002211 1 59 4.3E-28 T 17-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_19800 ce4915bb1bc01c335e890fde6c334166 59 Pfam PF00327 Ribosomal protein L30p/L7e 5 55 4.6E-20 T 17-10-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain VI35_19800 ce4915bb1bc01c335e890fde6c334166 59 Gene3D G3DSA:3.30.1390.20 1 58 2.9E-27 T 17-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily VI35_19120 4a29de7bbea2c7c1f1b6990f93b91243 387 SUPERFAMILY SSF48452 148 384 9.66E-8 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_19120 4a29de7bbea2c7c1f1b6990f93b91243 387 TIGRFAM TIGR00540 TPR_hemY_coli: heme biosynthesis-associated TPR protein 2 381 2.4E-89 T 17-10-2018 IPR005254 Heme biosynthesis-associated TPR protein GO:0016020|GO:0042168 VI35_19120 4a29de7bbea2c7c1f1b6990f93b91243 387 Gene3D G3DSA:1.25.40.10 159 303 3.7E-9 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_19120 4a29de7bbea2c7c1f1b6990f93b91243 387 Gene3D G3DSA:1.25.40.10 304 386 5.0E-7 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_19120 4a29de7bbea2c7c1f1b6990f93b91243 387 Pfam PF07219 HemY protein N-terminus 26 132 5.7E-31 T 17-10-2018 IPR010817 HemY, N-terminal VI35_15955 95fe8deb45f3d6c594a54c838ba693e7 199 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 58 177 1.9E-14 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_15955 95fe8deb45f3d6c594a54c838ba693e7 199 SUPERFAMILY SSF56784 2 189 3.97E-33 T 17-10-2018 IPR036412 HAD-like superfamily VI35_15955 95fe8deb45f3d6c594a54c838ba693e7 199 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 143 163 6.8E-5 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_15955 95fe8deb45f3d6c594a54c838ba693e7 199 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 94 107 6.8E-5 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_15955 95fe8deb45f3d6c594a54c838ba693e7 199 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 125 141 6.8E-5 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_15955 95fe8deb45f3d6c594a54c838ba693e7 199 Gene3D G3DSA:1.10.150.240 16 80 5.1E-38 T 17-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 VI35_15955 95fe8deb45f3d6c594a54c838ba693e7 199 Pfam PF13419 Haloacid dehalogenase-like hydrolase 81 177 2.5E-8 T 17-10-2018 VI35_15955 95fe8deb45f3d6c594a54c838ba693e7 199 Gene3D G3DSA:3.40.50.1000 4 178 5.1E-38 T 17-10-2018 IPR023214 HAD superfamily VI35_18585 3d8c233358444699e7bd525efa58a5fa 68 Pfam PF04024 PspC domain 7 59 5.8E-11 T 17-10-2018 IPR007168 Phage shock protein, PspC, N-terminal VI35_10025 0e69f86e0b417f5e41529855b589d863 385 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 123 135 - T 17-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 VI35_10025 0e69f86e0b417f5e41529855b589d863 385 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 117 5.1E-22 T 17-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 VI35_10025 0e69f86e0b417f5e41529855b589d863 385 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 335 354 - T 17-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 VI35_10025 0e69f86e0b417f5e41529855b589d863 385 Gene3D G3DSA:1.10.540.10 1 117 2.9E-30 T 17-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 VI35_10025 0e69f86e0b417f5e41529855b589d863 385 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 377 1.6E-52 T 17-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 VI35_10025 0e69f86e0b417f5e41529855b589d863 385 SUPERFAMILY SSF47203 225 379 2.26E-61 T 17-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 VI35_10025 0e69f86e0b417f5e41529855b589d863 385 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 215 6.7E-25 T 17-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 VI35_10025 0e69f86e0b417f5e41529855b589d863 385 Gene3D G3DSA:1.20.140.10 233 383 1.7E-57 T 17-10-2018 VI35_10025 0e69f86e0b417f5e41529855b589d863 385 SUPERFAMILY SSF56645 1 240 3.8E-74 T 17-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 VI35_10025 0e69f86e0b417f5e41529855b589d863 385 PIRSF PIRSF016578 222 383 4.0E-14 T 17-10-2018 VI35_10025 0e69f86e0b417f5e41529855b589d863 385 PIRSF PIRSF016578 2 192 4.1E-8 T 17-10-2018 VI35_10025 0e69f86e0b417f5e41529855b589d863 385 Gene3D G3DSA:2.40.110.10 121 232 1.8E-41 T 17-10-2018 VI35_21170 f63a00de43597566ec74c2550e025203 629 Pfam PF01134 Glucose inhibited division protein A 8 399 1.1E-166 T 17-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 VI35_21170 f63a00de43597566ec74c2550e025203 629 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 7 622 6.1E-281 T 17-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 VI35_21170 f63a00de43597566ec74c2550e025203 629 Gene3D G3DSA:3.50.50.60 1 226 4.1E-89 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_21170 f63a00de43597566ec74c2550e025203 629 Gene3D G3DSA:3.50.50.60 296 458 6.2E-55 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_21170 f63a00de43597566ec74c2550e025203 629 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 5 624 42.079 T 17-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 VI35_21170 f63a00de43597566ec74c2550e025203 629 SUPERFAMILY SSF51905 6 261 1.17E-51 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_21170 f63a00de43597566ec74c2550e025203 629 Gene3D G3DSA:1.10.150.570 570 622 6.5E-23 T 17-10-2018 VI35_21170 f63a00de43597566ec74c2550e025203 629 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 273 287 - T 17-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 VI35_21170 f63a00de43597566ec74c2550e025203 629 Pfam PF13932 GidA associated domain 403 616 4.5E-74 T 17-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 VI35_21170 f63a00de43597566ec74c2550e025203 629 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 368 391 - T 17-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 VI35_21170 f63a00de43597566ec74c2550e025203 629 Gene3D G3DSA:1.10.10.1800 459 550 1.4E-30 T 17-10-2018 VI35_21170 f63a00de43597566ec74c2550e025203 629 SMART SM01228 546 617 9.3E-44 T 17-10-2018 VI35_16745 e0fb1ccbee9b1cafee60d35fde8f45e1 400 PIRSF PIRSF000722 1 400 8.5E-144 T 17-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VI35_16745 e0fb1ccbee9b1cafee60d35fde8f45e1 400 Gene3D G3DSA:3.30.420.40 2 197 5.2E-73 T 17-10-2018 VI35_16745 e0fb1ccbee9b1cafee60d35fde8f45e1 400 PRINTS PR00471 Acetate kinase family signature 5 16 9.8E-48 T 17-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VI35_16745 e0fb1ccbee9b1cafee60d35fde8f45e1 400 PRINTS PR00471 Acetate kinase family signature 301 314 9.8E-48 T 17-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VI35_16745 e0fb1ccbee9b1cafee60d35fde8f45e1 400 PRINTS PR00471 Acetate kinase family signature 205 226 9.8E-48 T 17-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VI35_16745 e0fb1ccbee9b1cafee60d35fde8f45e1 400 PRINTS PR00471 Acetate kinase family signature 324 340 9.8E-48 T 17-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VI35_16745 e0fb1ccbee9b1cafee60d35fde8f45e1 400 PRINTS PR00471 Acetate kinase family signature 175 188 9.8E-48 T 17-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VI35_16745 e0fb1ccbee9b1cafee60d35fde8f45e1 400 PRINTS PR00471 Acetate kinase family signature 379 391 9.8E-48 T 17-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VI35_16745 e0fb1ccbee9b1cafee60d35fde8f45e1 400 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 5 16 - T 17-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VI35_16745 e0fb1ccbee9b1cafee60d35fde8f45e1 400 SUPERFAMILY SSF53067 3 198 1.94E-63 T 17-10-2018 VI35_16745 e0fb1ccbee9b1cafee60d35fde8f45e1 400 SUPERFAMILY SSF53067 159 398 3.81E-85 T 17-10-2018 VI35_16745 e0fb1ccbee9b1cafee60d35fde8f45e1 400 Gene3D G3DSA:3.30.420.40 198 399 5.3E-86 T 17-10-2018 VI35_16745 e0fb1ccbee9b1cafee60d35fde8f45e1 400 TIGRFAM TIGR00016 ackA: acetate kinase 2 397 2.3E-172 T 17-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VI35_16745 e0fb1ccbee9b1cafee60d35fde8f45e1 400 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 205 222 - T 17-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VI35_16745 e0fb1ccbee9b1cafee60d35fde8f45e1 400 Pfam PF00871 Acetokinase family 5 391 2.3E-164 T 17-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VI35_16745 e0fb1ccbee9b1cafee60d35fde8f45e1 400 Hamap MF_00020 Acetate kinase [ackA]. 1 400 189.724 T 17-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VI35_16880 095e1a2918d19066ded426826a63e494 348 SUPERFAMILY SSF51412 2 324 4.27E-62 T 17-10-2018 VI35_16880 095e1a2918d19066ded426826a63e494 348 Pfam PF03060 Nitronate monooxygenase 7 342 2.5E-78 T 17-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 VI35_16880 095e1a2918d19066ded426826a63e494 348 Gene3D G3DSA:3.20.20.70 2 347 1.1E-112 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_15645 c6a7732df74dca09a15a3e54dda4763f 451 Gene3D G3DSA:3.30.1850.10 1 118 4.2E-54 T 17-10-2018 IPR037153 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH-like superfamily KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 VI35_15645 c6a7732df74dca09a15a3e54dda4763f 451 Pfam PF14793 Domain of unknown function (DUF4478) 4 110 1.8E-50 T 17-10-2018 IPR027820 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH, N-terminal KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 VI35_15645 c6a7732df74dca09a15a3e54dda4763f 451 Pfam PF11892 Domain of unknown function (DUF3412) 330 450 7.2E-58 T 17-10-2018 IPR021826 Domain of unknown function DUF3412 KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 VI35_15645 c6a7732df74dca09a15a3e54dda4763f 451 Pfam PF03641 Possible lysine decarboxylase 187 325 1.0E-31 T 17-10-2018 IPR031100 LOG family VI35_15645 c6a7732df74dca09a15a3e54dda4763f 451 SUPERFAMILY SSF102405 123 327 1.24E-39 T 17-10-2018 VI35_15645 c6a7732df74dca09a15a3e54dda4763f 451 Gene3D G3DSA:3.40.50.450 119 449 2.0E-119 T 17-10-2018 VI35_03785 1b03f2490ffafe188116694ead70e14f 334 SUPERFAMILY SSF111369 44 111 1.29E-5 T 17-10-2018 VI35_03785 1b03f2490ffafe188116694ead70e14f 334 Gene3D G3DSA:1.10.287.470 85 214 1.0E-27 T 17-10-2018 VI35_03785 1b03f2490ffafe188116694ead70e14f 334 Gene3D G3DSA:2.40.30.170 42 330 1.0E-27 T 17-10-2018 VI35_03785 1b03f2490ffafe188116694ead70e14f 334 Gene3D G3DSA:2.40.50.100 51 249 1.0E-27 T 17-10-2018 VI35_03785 1b03f2490ffafe188116694ead70e14f 334 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 42 291 1.5E-9 T 17-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VI35_13700 bef8bdce03070ea14e7d39f765a073ca 230 Gene3D G3DSA:3.30.70.580 63 227 3.5E-62 T 17-10-2018 VI35_13700 bef8bdce03070ea14e7d39f765a073ca 230 SUPERFAMILY SSF55120 61 227 8.96E-47 T 17-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_13700 bef8bdce03070ea14e7d39f765a073ca 230 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 66 224 1.2E-50 T 17-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 VI35_13700 bef8bdce03070ea14e7d39f765a073ca 230 SMART SM00363 1 59 7.0E-9 T 17-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_13700 bef8bdce03070ea14e7d39f765a073ca 230 Gene3D G3DSA:3.10.290.10 1 62 5.5E-19 T 17-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 VI35_13700 bef8bdce03070ea14e7d39f765a073ca 230 Pfam PF00849 RNA pseudouridylate synthase 62 192 1.2E-17 T 17-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_13700 bef8bdce03070ea14e7d39f765a073ca 230 Gene3D G3DSA:3.30.70.1560 128 209 3.5E-62 T 17-10-2018 VI35_13700 bef8bdce03070ea14e7d39f765a073ca 230 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 99 113 - T 17-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 VI35_13700 bef8bdce03070ea14e7d39f765a073ca 230 SUPERFAMILY SSF55174 1 83 2.21E-15 T 17-10-2018 VI35_13700 bef8bdce03070ea14e7d39f765a073ca 230 Pfam PF01479 S4 domain 1 45 5.1E-9 T 17-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_11590 a60df9a68a22d22007722dff2d4d1580 188 Gene3D G3DSA:1.20.950.20 32 163 3.1E-11 T 17-10-2018 VI35_11590 a60df9a68a22d22007722dff2d4d1580 188 SUPERFAMILY SSF81342 8 179 1.96E-35 T 17-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 VI35_11590 a60df9a68a22d22007722dff2d4d1580 188 Pfam PF01292 Prokaryotic cytochrome b561 13 174 3.0E-20 T 17-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 VI35_12905 90f12f999e954d0fe997a7faddebbda5 203 SUPERFAMILY SSF81901 19 173 2.01E-42 T 17-10-2018 VI35_12905 90f12f999e954d0fe997a7faddebbda5 203 SMART SM00671 62 95 1.7E-6 T 17-10-2018 IPR006597 Sel1-like repeat VI35_12905 90f12f999e954d0fe997a7faddebbda5 203 SMART SM00671 26 61 3.1E-12 T 17-10-2018 IPR006597 Sel1-like repeat VI35_12905 90f12f999e954d0fe997a7faddebbda5 203 SMART SM00671 96 131 5.3E-12 T 17-10-2018 IPR006597 Sel1-like repeat VI35_12905 90f12f999e954d0fe997a7faddebbda5 203 SMART SM00671 132 167 8.5E-6 T 17-10-2018 IPR006597 Sel1-like repeat VI35_12905 90f12f999e954d0fe997a7faddebbda5 203 Gene3D G3DSA:1.25.40.10 10 76 1.2E-19 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_12905 90f12f999e954d0fe997a7faddebbda5 203 Gene3D G3DSA:1.25.40.10 77 201 1.1E-38 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_12905 90f12f999e954d0fe997a7faddebbda5 203 Pfam PF08238 Sel1 repeat 96 131 1.7E-10 T 17-10-2018 IPR006597 Sel1-like repeat VI35_12905 90f12f999e954d0fe997a7faddebbda5 203 Pfam PF08238 Sel1 repeat 62 95 2.1E-5 T 17-10-2018 IPR006597 Sel1-like repeat VI35_12905 90f12f999e954d0fe997a7faddebbda5 203 Pfam PF08238 Sel1 repeat 132 159 0.0071 T 17-10-2018 IPR006597 Sel1-like repeat VI35_12905 90f12f999e954d0fe997a7faddebbda5 203 Pfam PF08238 Sel1 repeat 26 61 3.0E-11 T 17-10-2018 IPR006597 Sel1-like repeat VI35_10595 4b5471f2a94f8b070c12ecdd82b2ef9a 370 SUPERFAMILY SSF47819 190 299 4.86E-27 T 17-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 VI35_10595 4b5471f2a94f8b070c12ecdd82b2ef9a 370 Gene3D G3DSA:1.10.150.80 292 370 9.0E-26 T 17-10-2018 VI35_10595 4b5471f2a94f8b070c12ecdd82b2ef9a 370 Gene3D G3DSA:3.30.420.10 1 191 3.6E-57 T 17-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VI35_10595 4b5471f2a94f8b070c12ecdd82b2ef9a 370 Hamap MF_01899 Ribonuclease D [rnd]. 3 370 42.625 T 17-10-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 VI35_10595 4b5471f2a94f8b070c12ecdd82b2ef9a 370 Pfam PF01612 3'-5' exonuclease 3 167 4.0E-29 T 17-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 VI35_10595 4b5471f2a94f8b070c12ecdd82b2ef9a 370 Gene3D G3DSA:1.10.150.80 193 291 5.9E-20 T 17-10-2018 VI35_10595 4b5471f2a94f8b070c12ecdd82b2ef9a 370 SUPERFAMILY SSF47819 294 369 8.6E-18 T 17-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 VI35_10595 4b5471f2a94f8b070c12ecdd82b2ef9a 370 SMART SM00474 3 169 7.7E-31 T 17-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 VI35_10595 4b5471f2a94f8b070c12ecdd82b2ef9a 370 TIGRFAM TIGR01388 rnd: ribonuclease D 5 368 1.4E-110 T 17-10-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 VI35_10595 4b5471f2a94f8b070c12ecdd82b2ef9a 370 Pfam PF00570 HRDC domain 211 277 1.1E-12 T 17-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 VI35_10595 4b5471f2a94f8b070c12ecdd82b2ef9a 370 SMART SM00341 208 286 5.8E-6 T 17-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 VI35_10595 4b5471f2a94f8b070c12ecdd82b2ef9a 370 SUPERFAMILY SSF53098 1 207 5.48E-55 T 17-10-2018 IPR012337 Ribonuclease H-like superfamily VI35_20945 1957ef9dbdf48efca7de5eb277454c14 86 Pfam PF07073 Modulator of Rho-dependent transcription termination (ROF) 6 64 4.2E-8 T 17-10-2018 IPR009778 Modulator of Rho-dependent transcription termination VI35_20945 1957ef9dbdf48efca7de5eb277454c14 86 Gene3D G3DSA:2.30.30.400 7 78 1.1E-7 T 17-10-2018 IPR038626 Rof-like superfamily VI35_20945 1957ef9dbdf48efca7de5eb277454c14 86 SUPERFAMILY SSF101744 1 67 6.28E-16 T 17-10-2018 IPR023534 Rof/RNase P-like Reactome: R-HSA-6784531 VI35_15050 45d8cd758b8bc3e6939f0782d15039fd 333 Pfam PF01389 OmpA-like transmembrane domain 24 182 2.0E-46 T 17-10-2018 IPR000498 Outer membrane protein OmpA-like, transmembrane domain GO:0009279|GO:0016021 VI35_15050 45d8cd758b8bc3e6939f0782d15039fd 333 Gene3D G3DSA:2.40.160.20 22 177 2.6E-27 T 17-10-2018 VI35_15050 45d8cd758b8bc3e6939f0782d15039fd 333 SUPERFAMILY SSF56925 23 169 5.76E-24 T 17-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VI35_15050 45d8cd758b8bc3e6939f0782d15039fd 333 PRINTS PR01021 OMPA domain signature 246 261 3.7E-20 T 17-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VI35_15050 45d8cd758b8bc3e6939f0782d15039fd 333 PRINTS PR01021 OMPA domain signature 214 236 3.7E-20 T 17-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VI35_15050 45d8cd758b8bc3e6939f0782d15039fd 333 PRINTS PR01021 OMPA domain signature 261 277 3.7E-20 T 17-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VI35_15050 45d8cd758b8bc3e6939f0782d15039fd 333 Gene3D G3DSA:3.30.1330.60 184 333 2.5E-48 T 17-10-2018 IPR036737 OmpA-like domain superfamily VI35_15050 45d8cd758b8bc3e6939f0782d15039fd 333 SUPERFAMILY SSF103088 202 325 1.12E-30 T 17-10-2018 IPR036737 OmpA-like domain superfamily VI35_15050 45d8cd758b8bc3e6939f0782d15039fd 333 ProSitePatterns PS01068 OmpA-like domain. 248 292 - T 17-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 VI35_15050 45d8cd758b8bc3e6939f0782d15039fd 333 Pfam PF00691 OmpA family 213 303 7.4E-19 T 17-10-2018 IPR006665 OmpA-like domain VI35_13655 90f5dcd930c4f0e9f92395ed192d37d9 133 Pfam PF00460 Flagella basal body rod protein 11 39 3.3E-8 T 17-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 VI35_13655 90f5dcd930c4f0e9f92395ed192d37d9 133 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 15 35 - T 17-10-2018 IPR019776 Flagellar basal body rod protein, conserved site VI35_13655 90f5dcd930c4f0e9f92395ed192d37d9 133 PIRSF PIRSF002889 1 131 1.3E-41 T 17-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 VI35_13655 90f5dcd930c4f0e9f92395ed192d37d9 133 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 5 129 2.3E-34 T 17-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 VI35_01035 92be34a74393f6cf0989c715bd5ceebc 309 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 136 147 6.0E-25 T 17-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 VI35_01035 92be34a74393f6cf0989c715bd5ceebc 309 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 52 71 6.0E-25 T 17-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 VI35_01035 92be34a74393f6cf0989c715bd5ceebc 309 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 270 293 6.0E-25 T 17-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 VI35_01035 92be34a74393f6cf0989c715bd5ceebc 309 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 260 269 6.0E-25 T 17-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 VI35_01035 92be34a74393f6cf0989c715bd5ceebc 309 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 52 59 - T 17-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 VI35_01035 92be34a74393f6cf0989c715bd5ceebc 309 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 10 307 37.866 T 17-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VI35_01035 92be34a74393f6cf0989c715bd5ceebc 309 Gene3D G3DSA:3.40.50.1370 136 292 3.0E-116 T 17-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 VI35_01035 92be34a74393f6cf0989c715bd5ceebc 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 226 235 3.6E-36 T 17-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VI35_01035 92be34a74393f6cf0989c715bd5ceebc 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 135 152 3.6E-36 T 17-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VI35_01035 92be34a74393f6cf0989c715bd5ceebc 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 286 300 3.6E-36 T 17-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VI35_01035 92be34a74393f6cf0989c715bd5ceebc 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 81 90 3.6E-36 T 17-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VI35_01035 92be34a74393f6cf0989c715bd5ceebc 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 42 64 3.6E-36 T 17-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VI35_01035 92be34a74393f6cf0989c715bd5ceebc 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 264 269 3.6E-36 T 17-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VI35_01035 92be34a74393f6cf0989c715bd5ceebc 309 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 11 305 2.3E-117 T 17-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VI35_01035 92be34a74393f6cf0989c715bd5ceebc 309 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 155 303 8.9E-32 T 17-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 VI35_01035 92be34a74393f6cf0989c715bd5ceebc 309 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 11 149 2.1E-44 T 17-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 VI35_01035 92be34a74393f6cf0989c715bd5ceebc 309 Gene3D G3DSA:3.40.50.1370 11 304 3.0E-116 T 17-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 VI35_01035 92be34a74393f6cf0989c715bd5ceebc 309 SUPERFAMILY SSF53671 7 307 4.7E-99 T 17-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 VI35_18030 2e6e396c3ca894191f11772e37b502bc 541 Gene3D G3DSA:1.10.3720.10 10 268 3.2E-54 T 17-10-2018 IPR035906 MetI-like superfamily VI35_18030 2e6e396c3ca894191f11772e37b502bc 541 Gene3D G3DSA:1.10.3720.10 284 538 8.0E-33 T 17-10-2018 IPR035906 MetI-like superfamily VI35_18030 2e6e396c3ca894191f11772e37b502bc 541 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 66 252 4.9E-13 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_18030 2e6e396c3ca894191f11772e37b502bc 541 SUPERFAMILY SSF161098 6 263 2.18E-43 T 17-10-2018 IPR035906 MetI-like superfamily VI35_18030 2e6e396c3ca894191f11772e37b502bc 541 SUPERFAMILY SSF161098 282 534 7.2E-36 T 17-10-2018 IPR035906 MetI-like superfamily VI35_05405 c78481469da4b8abdb7f8675247c78f2 224 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 33 47 - T 17-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 VI35_05405 c78481469da4b8abdb7f8675247c78f2 224 Pfam PF00834 Ribulose-phosphate 3 epimerase family 6 203 9.7E-92 T 17-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 VI35_05405 c78481469da4b8abdb7f8675247c78f2 224 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 5 216 3.0E-98 T 17-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 VI35_05405 c78481469da4b8abdb7f8675247c78f2 224 SUPERFAMILY SSF51366 4 218 1.06E-74 T 17-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 VI35_05405 c78481469da4b8abdb7f8675247c78f2 224 Gene3D G3DSA:3.20.20.70 5 221 1.1E-83 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_05405 c78481469da4b8abdb7f8675247c78f2 224 PIRSF PIRSF001461 1 224 5.3E-105 T 17-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 VI35_05405 c78481469da4b8abdb7f8675247c78f2 224 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 136 158 - T 17-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 VI35_01825 16c4a4dcaeb9424ea0f57cb2f7c8dc13 241 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 214 236 4.2E-8 T 17-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal VI35_01825 16c4a4dcaeb9424ea0f57cb2f7c8dc13 241 SMART SM00382 28 202 2.9E-7 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_01825 16c4a4dcaeb9424ea0f57cb2f7c8dc13 241 Gene3D G3DSA:3.40.50.300 2 241 5.9E-68 T 17-10-2018 VI35_01825 16c4a4dcaeb9424ea0f57cb2f7c8dc13 241 SUPERFAMILY SSF52540 3 236 3.51E-63 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_01825 16c4a4dcaeb9424ea0f57cb2f7c8dc13 241 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_01825 16c4a4dcaeb9424ea0f57cb2f7c8dc13 241 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 4 241 3.0E-120 T 17-10-2018 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 VI35_01825 16c4a4dcaeb9424ea0f57cb2f7c8dc13 241 Pfam PF00005 ABC transporter 20 166 2.1E-34 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_08930 dd8c619e7768b123a732117f2fb98931 120 Pfam PF05866 Endodeoxyribonuclease RusA 4 113 3.8E-15 T 17-10-2018 IPR008822 Holliday junction resolvase RusA-like GO:0000287|GO:0006281|GO:0006310 VI35_08930 dd8c619e7768b123a732117f2fb98931 120 PIRSF PIRSF001007 1 119 7.0E-34 T 17-10-2018 IPR016281 Crossover junction endodeoxyribonuclease, RusA GO:0008821 VI35_08930 dd8c619e7768b123a732117f2fb98931 120 Gene3D G3DSA:3.30.1330.70 1 119 4.1E-40 T 17-10-2018 IPR036614 Holliday junction resolvase RusA-like superfamily GO:0000287|GO:0006281|GO:0006310 VI35_08930 dd8c619e7768b123a732117f2fb98931 120 SUPERFAMILY SSF103084 2 115 8.89E-23 T 17-10-2018 IPR036614 Holliday junction resolvase RusA-like superfamily GO:0000287|GO:0006281|GO:0006310 VI35_13015 9691e1fd7e3261a049df00765c70807b 1485 SUPERFAMILY SSF56235 13 428 1.19E-147 T 17-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VI35_13015 9691e1fd7e3261a049df00765c70807b 1485 Gene3D G3DSA:2.160.20.60 1197 1467 3.0E-100 T 17-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 VI35_13015 9691e1fd7e3261a049df00765c70807b 1485 Pfam PF01493 GXGXG motif 1234 1418 1.6E-76 T 17-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 VI35_13015 9691e1fd7e3261a049df00765c70807b 1485 Gene3D G3DSA:3.60.20.10 13 545 0.0 T 17-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VI35_13015 9691e1fd7e3261a049df00765c70807b 1485 SUPERFAMILY SSF51395 436 1189 5.29E-259 T 17-10-2018 VI35_13015 9691e1fd7e3261a049df00765c70807b 1485 Gene3D G3DSA:3.20.20.70 430 791 0.0 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_13015 9691e1fd7e3261a049df00765c70807b 1485 Pfam PF01645 Conserved region in glutamate synthase 792 1155 2.8E-155 T 17-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 VI35_13015 9691e1fd7e3261a049df00765c70807b 1485 SUPERFAMILY SSF69336 1212 1464 3.66E-89 T 17-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 VI35_13015 9691e1fd7e3261a049df00765c70807b 1485 Pfam PF04898 Glutamate synthase central domain 457 736 3.1E-105 T 17-10-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 VI35_13015 9691e1fd7e3261a049df00765c70807b 1485 Gene3D G3DSA:3.20.20.70 483 1170 0.0 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_13015 9691e1fd7e3261a049df00765c70807b 1485 Pfam PF00310 Glutamine amidotransferases class-II 13 425 3.8E-170 T 17-10-2018 IPR017932 Glutamine amidotransferase type 2 domain VI35_15465 45c52b63b0b1ff659232ce2d3a75c8fa 316 Gene3D G3DSA:3.90.226.10 1 315 1.6E-121 T 17-10-2018 VI35_15465 45c52b63b0b1ff659232ce2d3a75c8fa 316 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 4 316 51.0 T 17-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VI35_15465 45c52b63b0b1ff659232ce2d3a75c8fa 316 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 4 148 3.5E-66 T 17-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VI35_15465 45c52b63b0b1ff659232ce2d3a75c8fa 316 SUPERFAMILY SSF52096 4 315 8.23E-105 T 17-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VI35_15465 45c52b63b0b1ff659232ce2d3a75c8fa 316 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 134 150 2.8E-50 T 17-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VI35_15465 45c52b63b0b1ff659232ce2d3a75c8fa 316 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 153 166 2.8E-50 T 17-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VI35_15465 45c52b63b0b1ff659232ce2d3a75c8fa 316 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 169 182 2.8E-50 T 17-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VI35_15465 45c52b63b0b1ff659232ce2d3a75c8fa 316 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 88 99 2.8E-50 T 17-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VI35_15465 45c52b63b0b1ff659232ce2d3a75c8fa 316 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 113 131 2.8E-50 T 17-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VI35_15465 45c52b63b0b1ff659232ce2d3a75c8fa 316 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 197 206 2.8E-50 T 17-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VI35_15465 45c52b63b0b1ff659232ce2d3a75c8fa 316 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 3 316 1.7E-166 T 17-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VI35_04690 2007af3d5056efcacbaef0c31762ab37 446 Pfam PF02785 Biotin carboxylase C-terminal domain 336 441 1.2E-36 T 17-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 VI35_04690 2007af3d5056efcacbaef0c31762ab37 446 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 322 5.5E-83 T 17-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 VI35_04690 2007af3d5056efcacbaef0c31762ab37 446 Gene3D G3DSA:3.30.1490.20 131 203 1.7E-155 T 17-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 VI35_04690 2007af3d5056efcacbaef0c31762ab37 446 SUPERFAMILY SSF56059 83 345 5.48E-71 T 17-10-2018 VI35_04690 2007af3d5056efcacbaef0c31762ab37 446 SUPERFAMILY SSF52440 1 113 1.87E-45 T 17-10-2018 IPR016185 Pre-ATP-grasp domain superfamily VI35_04690 2007af3d5056efcacbaef0c31762ab37 446 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 154 168 - T 17-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 VI35_04690 2007af3d5056efcacbaef0c31762ab37 446 SMART SM00878 336 441 2.8E-61 T 17-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 VI35_04690 2007af3d5056efcacbaef0c31762ab37 446 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 444 2.5E-238 T 17-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 VI35_04690 2007af3d5056efcacbaef0c31762ab37 446 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 3.4E-43 T 17-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 VI35_04690 2007af3d5056efcacbaef0c31762ab37 446 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 17-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 VI35_04690 2007af3d5056efcacbaef0c31762ab37 446 Gene3D G3DSA:3.40.50.20 1 85 2.1E-33 T 17-10-2018 VI35_04690 2007af3d5056efcacbaef0c31762ab37 446 SUPERFAMILY SSF51246 331 443 5.23E-42 T 17-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 VI35_04690 2007af3d5056efcacbaef0c31762ab37 446 Gene3D G3DSA:3.30.470.20 86 433 1.7E-155 T 17-10-2018 VI35_19600 46043fbbd50e1622135c3e143d7f305e 473 Pfam PF01464 Transglycosylase SLT domain 306 416 1.1E-18 T 17-10-2018 IPR008258 Transglycosylase SLT domain 1 VI35_19600 46043fbbd50e1622135c3e143d7f305e 473 Gene3D G3DSA:1.10.530.10 300 465 1.2E-33 T 17-10-2018 VI35_19600 46043fbbd50e1622135c3e143d7f305e 473 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 81 266 1.4E-19 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_19600 46043fbbd50e1622135c3e143d7f305e 473 SUPERFAMILY SSF53850 34 272 5.63E-24 T 17-10-2018 VI35_19600 46043fbbd50e1622135c3e143d7f305e 473 Gene3D G3DSA:3.40.190.10 36 273 7.5E-40 T 17-10-2018 VI35_19600 46043fbbd50e1622135c3e143d7f305e 473 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 322 350 - T 17-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 VI35_19600 46043fbbd50e1622135c3e143d7f305e 473 SUPERFAMILY SSF53955 285 455 6.57E-31 T 17-10-2018 IPR023346 Lysozyme-like domain superfamily VI35_19600 46043fbbd50e1622135c3e143d7f305e 473 Gene3D G3DSA:3.40.190.10 135 239 7.5E-40 T 17-10-2018 VI35_19600 46043fbbd50e1622135c3e143d7f305e 473 SMART SM00062 60 273 0.0013 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_11665 72328b2e75ea78f2acd20e4ce7addc2d 173 Pfam PF02600 Disulfide bond formation protein DsbB 12 160 9.5E-47 T 17-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 VI35_11665 72328b2e75ea78f2acd20e4ce7addc2d 173 Hamap MF_00286 Disulfide bond formation protein B [dsbB]. 7 168 22.853 T 17-10-2018 IPR022920 Disulphide bond formation protein DsbB VI35_11665 72328b2e75ea78f2acd20e4ce7addc2d 173 Gene3D G3DSA:1.20.1550.10 1 170 4.1E-59 T 17-10-2018 IPR023380 DsbB-like superfamily VI35_11665 72328b2e75ea78f2acd20e4ce7addc2d 173 SUPERFAMILY SSF158442 15 161 1.14E-45 T 17-10-2018 IPR023380 DsbB-like superfamily VI35_05240 e8eb0a08effdce1b5b1422f3bd6d7b9c 282 Pfam PF00106 short chain dehydrogenase 6 191 6.0E-38 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_05240 e8eb0a08effdce1b5b1422f3bd6d7b9c 282 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 2.3E-8 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_05240 e8eb0a08effdce1b5b1422f3bd6d7b9c 282 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 2.3E-8 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_05240 e8eb0a08effdce1b5b1422f3bd6d7b9c 282 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 2.3E-8 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_05240 e8eb0a08effdce1b5b1422f3bd6d7b9c 282 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 17-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 VI35_05240 e8eb0a08effdce1b5b1422f3bd6d7b9c 282 Gene3D G3DSA:3.40.50.720 1 259 3.3E-54 T 17-10-2018 VI35_05240 e8eb0a08effdce1b5b1422f3bd6d7b9c 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 8.6E-14 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_05240 e8eb0a08effdce1b5b1422f3bd6d7b9c 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 8.6E-14 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_05240 e8eb0a08effdce1b5b1422f3bd6d7b9c 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 8.6E-14 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_05240 e8eb0a08effdce1b5b1422f3bd6d7b9c 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 8.6E-14 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_05240 e8eb0a08effdce1b5b1422f3bd6d7b9c 282 SUPERFAMILY SSF51735 1 258 3.78E-57 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_06925 6494de86fb5ed3ea79af10c028f3967b 300 Gene3D G3DSA:1.10.10.10 3 89 8.0E-25 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_06925 6494de86fb5ed3ea79af10c028f3967b 300 Gene3D G3DSA:3.40.190.290 91 290 7.0E-71 T 17-10-2018 VI35_06925 6494de86fb5ed3ea79af10c028f3967b 300 SUPERFAMILY SSF46785 5 111 1.36E-18 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_06925 6494de86fb5ed3ea79af10c028f3967b 300 SUPERFAMILY SSF53850 88 290 7.24E-53 T 17-10-2018 VI35_06925 6494de86fb5ed3ea79af10c028f3967b 300 Pfam PF03466 LysR substrate binding domain 88 289 2.3E-48 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_06925 6494de86fb5ed3ea79af10c028f3967b 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 3.0E-17 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_09920 e607ec704c93b4f0f3bab39ceb9b3827 784 PIRSF PIRSF001174 1 775 0.0 T 17-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 VI35_09920 e607ec704c93b4f0f3bab39ceb9b3827 784 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 352 489 1.2E-17 T 17-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VI35_09920 e607ec704c93b4f0f3bab39ceb9b3827 784 SMART SM00464 10 202 2.9E-78 T 17-10-2018 IPR003111 Lon, substrate-binding domain VI35_09920 e607ec704c93b4f0f3bab39ceb9b3827 784 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 10 201 1.5E-42 T 17-10-2018 IPR003111 Lon, substrate-binding domain VI35_09920 e607ec704c93b4f0f3bab39ceb9b3827 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 356 375 3.7E-56 T 17-10-2018 VI35_09920 e607ec704c93b4f0f3bab39ceb9b3827 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 726 744 3.7E-56 T 17-10-2018 VI35_09920 e607ec704c93b4f0f3bab39ceb9b3827 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 673 692 3.7E-56 T 17-10-2018 VI35_09920 e607ec704c93b4f0f3bab39ceb9b3827 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 595 611 3.7E-56 T 17-10-2018 VI35_09920 e607ec704c93b4f0f3bab39ceb9b3827 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 703 722 3.7E-56 T 17-10-2018 VI35_09920 e607ec704c93b4f0f3bab39ceb9b3827 784 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 676 684 - T 17-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 VI35_09920 e607ec704c93b4f0f3bab39ceb9b3827 784 SUPERFAMILY SSF88697 10 201 1.09E-50 T 17-10-2018 IPR015947 PUA-like superfamily VI35_09920 e607ec704c93b4f0f3bab39ceb9b3827 784 Gene3D G3DSA:3.30.230.10 585 772 9.7E-87 T 17-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VI35_09920 e607ec704c93b4f0f3bab39ceb9b3827 784 Hamap MF_01973 Lon protease [lon]. 11 772 71.661 T 17-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 VI35_09920 e607ec704c93b4f0f3bab39ceb9b3827 784 Gene3D G3DSA:1.10.8.60 491 584 2.3E-33 T 17-10-2018 VI35_09920 e607ec704c93b4f0f3bab39ceb9b3827 784 TIGRFAM TIGR00763 lon: endopeptidase La 12 770 0.0 T 17-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 VI35_09920 e607ec704c93b4f0f3bab39ceb9b3827 784 SMART SM00382 348 492 6.1E-11 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_09920 e607ec704c93b4f0f3bab39ceb9b3827 784 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 570 772 7.0E-99 T 17-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 VI35_09920 e607ec704c93b4f0f3bab39ceb9b3827 784 Gene3D G3DSA:2.30.130.40 1 117 2.0E-36 T 17-10-2018 VI35_09920 e607ec704c93b4f0f3bab39ceb9b3827 784 SUPERFAMILY SSF54211 595 771 6.07E-60 T 17-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VI35_09920 e607ec704c93b4f0f3bab39ceb9b3827 784 SUPERFAMILY SSF52540 315 587 8.75E-52 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_09920 e607ec704c93b4f0f3bab39ceb9b3827 784 Gene3D G3DSA:1.20.58.1480 120 245 1.2E-44 T 17-10-2018 VI35_09920 e607ec704c93b4f0f3bab39ceb9b3827 784 Gene3D G3DSA:3.40.50.300 314 490 6.4E-62 T 17-10-2018 VI35_06955 4d439b2210ab7d746be5af17b83eaf81 408 Pfam PF07687 Peptidase dimerisation domain 205 298 1.3E-9 T 17-10-2018 IPR011650 Peptidase M20, dimerisation domain VI35_06955 4d439b2210ab7d746be5af17b83eaf81 408 PIRSF PIRSF037215 1 405 7.9E-177 T 17-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 VI35_06955 4d439b2210ab7d746be5af17b83eaf81 408 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 72 81 - T 17-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 VI35_06955 4d439b2210ab7d746be5af17b83eaf81 408 Gene3D G3DSA:3.40.630.10 4 398 4.9E-165 T 17-10-2018 VI35_06955 4d439b2210ab7d746be5af17b83eaf81 408 TIGRFAM TIGR01882 peptidase-T: peptidase T 3 403 7.4E-152 T 17-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 VI35_06955 4d439b2210ab7d746be5af17b83eaf81 408 SUPERFAMILY SSF53187 2 400 6.54E-78 T 17-10-2018 VI35_06955 4d439b2210ab7d746be5af17b83eaf81 408 Gene3D G3DSA:3.30.70.360 207 317 4.9E-165 T 17-10-2018 VI35_06955 4d439b2210ab7d746be5af17b83eaf81 408 Pfam PF01546 Peptidase family M20/M25/M40 137 400 3.7E-15 T 17-10-2018 IPR002933 Peptidase M20 GO:0016787 VI35_06955 4d439b2210ab7d746be5af17b83eaf81 408 SUPERFAMILY SSF55031 207 317 7.32E-36 T 17-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain VI35_06955 4d439b2210ab7d746be5af17b83eaf81 408 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 136 175 - T 17-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 VI35_15540 e6f186acbde751975c9d4a486c4d5f29 293 Gene3D G3DSA:1.10.286.20 194 233 7.2E-23 T 17-10-2018 VI35_15540 e6f186acbde751975c9d4a486c4d5f29 293 Pfam PF00889 Elongation factor TS 71 270 2.4E-67 T 17-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 VI35_15540 e6f186acbde751975c9d4a486c4d5f29 293 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 287 6.0E-114 T 17-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 VI35_15540 e6f186acbde751975c9d4a486c4d5f29 293 SUPERFAMILY SSF46934 3 56 1.33E-18 T 17-10-2018 IPR009060 UBA-like superfamily GO:0005515 VI35_15540 e6f186acbde751975c9d4a486c4d5f29 293 SUPERFAMILY SSF54713 56 146 1.29E-19 T 17-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 VI35_15540 e6f186acbde751975c9d4a486c4d5f29 293 SUPERFAMILY SSF54713 150 287 1.7E-53 T 17-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 VI35_15540 e6f186acbde751975c9d4a486c4d5f29 293 ProSitePatterns PS01127 Elongation factor Ts signature 2. 75 85 - T 17-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 VI35_15540 e6f186acbde751975c9d4a486c4d5f29 293 Gene3D G3DSA:1.10.8.10 1 56 1.0E-26 T 17-10-2018 VI35_15540 e6f186acbde751975c9d4a486c4d5f29 293 Hamap MF_00050 Elongation factor Ts [tsf]. 1 287 81.451 T 17-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 VI35_15540 e6f186acbde751975c9d4a486c4d5f29 293 Gene3D G3DSA:3.30.479.20 57 148 5.1E-25 T 17-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 VI35_21110 c9ff0ff8fb1b68d1aa31896d12ae0307 139 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 2 130 21.039 T 17-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21110 c9ff0ff8fb1b68d1aa31896d12ae0307 139 Pfam PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain 87 131 4.0E-15 T 17-10-2018 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain VI35_21110 c9ff0ff8fb1b68d1aa31896d12ae0307 139 Gene3D G3DSA:2.60.15.10 2 89 8.8E-30 T 17-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21110 c9ff0ff8fb1b68d1aa31896d12ae0307 139 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 4 131 2.6E-43 T 17-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21110 c9ff0ff8fb1b68d1aa31896d12ae0307 139 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 9 89 1.0E-29 T 17-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21110 c9ff0ff8fb1b68d1aa31896d12ae0307 139 SUPERFAMILY SSF51344 4 85 1.7E-23 T 17-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21110 c9ff0ff8fb1b68d1aa31896d12ae0307 139 Gene3D G3DSA:1.20.5.440 90 132 3.3E-20 T 17-10-2018 VI35_21110 c9ff0ff8fb1b68d1aa31896d12ae0307 139 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 4 83 7.8E-28 T 17-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21110 c9ff0ff8fb1b68d1aa31896d12ae0307 139 SUPERFAMILY SSF46604 87 135 1.94E-15 T 17-10-2018 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_02550 49cadd472158b3ab82d529bfd56d4ec9 159 PIRSF PIRSF002560 1 157 2.6E-73 T 17-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 VI35_02550 49cadd472158b3ab82d529bfd56d4ec9 159 SUPERFAMILY SSF47240 1 154 1.81E-55 T 17-10-2018 IPR009078 Ferritin-like superfamily VI35_02550 49cadd472158b3ab82d529bfd56d4ec9 159 PRINTS PR00601 Bacterioferritin signature 23 43 3.5E-74 T 17-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 VI35_02550 49cadd472158b3ab82d529bfd56d4ec9 159 PRINTS PR00601 Bacterioferritin signature 65 85 3.5E-74 T 17-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 VI35_02550 49cadd472158b3ab82d529bfd56d4ec9 159 PRINTS PR00601 Bacterioferritin signature 86 106 3.5E-74 T 17-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 VI35_02550 49cadd472158b3ab82d529bfd56d4ec9 159 PRINTS PR00601 Bacterioferritin signature 128 149 3.5E-74 T 17-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 VI35_02550 49cadd472158b3ab82d529bfd56d4ec9 159 PRINTS PR00601 Bacterioferritin signature 44 64 3.5E-74 T 17-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 VI35_02550 49cadd472158b3ab82d529bfd56d4ec9 159 PRINTS PR00601 Bacterioferritin signature 107 127 3.5E-74 T 17-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 VI35_02550 49cadd472158b3ab82d529bfd56d4ec9 159 PRINTS PR00601 Bacterioferritin signature 3 22 3.5E-74 T 17-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 VI35_02550 49cadd472158b3ab82d529bfd56d4ec9 159 Gene3D G3DSA:1.20.1260.10 1 158 2.2E-71 T 17-10-2018 IPR012347 Ferritin-like VI35_02550 49cadd472158b3ab82d529bfd56d4ec9 159 Pfam PF00210 Ferritin-like domain 8 144 9.2E-41 T 17-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 VI35_02550 49cadd472158b3ab82d529bfd56d4ec9 159 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 17-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 VI35_02550 49cadd472158b3ab82d529bfd56d4ec9 159 TIGRFAM TIGR00754 bfr: bacterioferritin 1 156 2.2E-79 T 17-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 VI35_12510 0e01da16b4b8507a177b1497e3c14cbb 320 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 127 315 8.2E-35 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_12510 0e01da16b4b8507a177b1497e3c14cbb 320 Gene3D G3DSA:1.10.3720.10 104 310 3.9E-23 T 17-10-2018 IPR035906 MetI-like superfamily VI35_12510 0e01da16b4b8507a177b1497e3c14cbb 320 SUPERFAMILY SSF161098 105 303 3.01E-20 T 17-10-2018 IPR035906 MetI-like superfamily VI35_11500 1e8396873ac27cf7f3f581c3bca965d3 287 Hamap MF_01639 Pyridoxal kinase PdxY [pdxY]. 1 286 51.089 T 17-10-2018 IPR023685 Pyridoxal kinase PdxY GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282 VI35_11500 1e8396873ac27cf7f3f581c3bca965d3 287 SUPERFAMILY SSF53613 1 279 1.33E-68 T 17-10-2018 IPR029056 Ribokinase-like VI35_11500 1e8396873ac27cf7f3f581c3bca965d3 287 Pfam PF08543 Phosphomethylpyrimidine kinase 75 262 1.9E-16 T 17-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 VI35_11500 1e8396873ac27cf7f3f581c3bca965d3 287 TIGRFAM TIGR00687 pyridox_kin: pyridoxal kinase 1 286 4.5E-113 T 17-10-2018 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-6798695|Reactome: R-HSA-964975 VI35_11500 1e8396873ac27cf7f3f581c3bca965d3 287 Gene3D G3DSA:3.40.1190.20 1 287 3.1E-83 T 17-10-2018 IPR029056 Ribokinase-like VI35_19815 f89f59c09c1dcd5b0218a8bb0449fa99 177 Pfam PF00347 Ribosomal protein L6 11 82 2.3E-19 T 17-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19815 f89f59c09c1dcd5b0218a8bb0449fa99 177 Pfam PF00347 Ribosomal protein L6 90 164 6.6E-20 T 17-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19815 f89f59c09c1dcd5b0218a8bb0449fa99 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 2.0E-71 T 17-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 VI35_19815 f89f59c09c1dcd5b0218a8bb0449fa99 177 PIRSF PIRSF002162 1 177 7.6E-42 T 17-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19815 f89f59c09c1dcd5b0218a8bb0449fa99 177 Gene3D G3DSA:3.90.930.12 83 177 3.6E-39 T 17-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19815 f89f59c09c1dcd5b0218a8bb0449fa99 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 17-10-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_19815 f89f59c09c1dcd5b0218a8bb0449fa99 177 Gene3D G3DSA:3.90.930.12 1 82 9.5E-28 T 17-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19815 f89f59c09c1dcd5b0218a8bb0449fa99 177 SUPERFAMILY SSF56053 1 82 7.59E-23 T 17-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19815 f89f59c09c1dcd5b0218a8bb0449fa99 177 SUPERFAMILY SSF56053 83 177 9.5E-35 T 17-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19815 f89f59c09c1dcd5b0218a8bb0449fa99 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 1.2E-33 T 17-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 VI35_19815 f89f59c09c1dcd5b0218a8bb0449fa99 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 1.2E-33 T 17-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 VI35_19815 f89f59c09c1dcd5b0218a8bb0449fa99 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 1.2E-33 T 17-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 VI35_19815 f89f59c09c1dcd5b0218a8bb0449fa99 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 36.35 T 17-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 VI35_14225 9aafc0703de46f22e39a2a8a14ecfa5e 505 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 93 301 7.0E-80 T 17-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VI35_14225 9aafc0703de46f22e39a2a8a14ecfa5e 505 Gene3D G3DSA:2.40.50.320 397 467 3.0E-20 T 17-10-2018 VI35_14225 9aafc0703de46f22e39a2a8a14ecfa5e 505 Gene3D G3DSA:1.10.287.470 145 157 1.2E-6 T 17-10-2018 VI35_14225 9aafc0703de46f22e39a2a8a14ecfa5e 505 SUPERFAMILY SSF111369 112 308 6.28E-20 T 17-10-2018 VI35_14225 9aafc0703de46f22e39a2a8a14ecfa5e 505 Gene3D G3DSA:1.10.287.470 168 185 3.7E-33 T 17-10-2018 VI35_14225 9aafc0703de46f22e39a2a8a14ecfa5e 505 Gene3D G3DSA:2.40.50.100 186 228 3.7E-33 T 17-10-2018 VI35_14225 9aafc0703de46f22e39a2a8a14ecfa5e 505 Gene3D G3DSA:2.40.420.20 307 396 1.3E-21 T 17-10-2018 VI35_14225 9aafc0703de46f22e39a2a8a14ecfa5e 505 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 166 380 6.9E-40 T 17-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VI35_14225 9aafc0703de46f22e39a2a8a14ecfa5e 505 Gene3D G3DSA:2.40.420.20 84 95 1.2E-6 T 17-10-2018 VI35_14225 9aafc0703de46f22e39a2a8a14ecfa5e 505 Gene3D G3DSA:2.40.50.100 110 144 1.2E-6 T 17-10-2018 VI35_14225 9aafc0703de46f22e39a2a8a14ecfa5e 505 Gene3D G3DSA:2.40.30.170 229 303 3.7E-33 T 17-10-2018 VI35_14225 9aafc0703de46f22e39a2a8a14ecfa5e 505 Pfam PF11604 Copper binding periplasmic protein CusF 399 464 1.1E-21 T 17-10-2018 IPR021647 Copper binding periplasmic protein CusF VI35_14225 9aafc0703de46f22e39a2a8a14ecfa5e 505 Gene3D G3DSA:2.40.30.170 96 109 1.2E-6 T 17-10-2018 VI35_08340 edbd02c1c9bd3fe892ae9cbcfecc6fe3 1565 Pfam PF03527 RHS protein 1330 1366 1.7E-12 T 17-10-2018 IPR001826 RHS protein VI35_08340 edbd02c1c9bd3fe892ae9cbcfecc6fe3 1565 Gene3D G3DSA:2.180.10.10 1168 1433 5.3E-40 T 17-10-2018 VI35_08340 edbd02c1c9bd3fe892ae9cbcfecc6fe3 1565 Gene3D G3DSA:3.90.930.1 646 777 6.3E-11 T 17-10-2018 VI35_08340 edbd02c1c9bd3fe892ae9cbcfecc6fe3 1565 Gene3D G3DSA:3.90.930.1 849 993 7.3E-15 T 17-10-2018 VI35_08340 edbd02c1c9bd3fe892ae9cbcfecc6fe3 1565 Pfam PF15657 HNH/Endo VII superfamily nuclease toxins 1492 1561 4.2E-18 T 17-10-2018 IPR028048 HNH/Endo VII superfamily nuclease toxins VI35_08340 edbd02c1c9bd3fe892ae9cbcfecc6fe3 1565 Pfam PF05593 RHS Repeat 1113 1149 4.6E-5 T 17-10-2018 IPR031325 RHS repeat VI35_08340 edbd02c1c9bd3fe892ae9cbcfecc6fe3 1565 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 818 859 2.2E-4 T 17-10-2018 IPR006530 YD repeat VI35_08340 edbd02c1c9bd3fe892ae9cbcfecc6fe3 1565 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 860 901 1.7E-6 T 17-10-2018 IPR006530 YD repeat VI35_08340 edbd02c1c9bd3fe892ae9cbcfecc6fe3 1565 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 839 880 2.0E-8 T 17-10-2018 IPR006530 YD repeat VI35_08340 edbd02c1c9bd3fe892ae9cbcfecc6fe3 1565 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 993 1024 6.0E-5 T 17-10-2018 IPR006530 YD repeat VI35_08340 edbd02c1c9bd3fe892ae9cbcfecc6fe3 1565 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1236 1270 2.4E-5 T 17-10-2018 IPR006530 YD repeat VI35_08340 edbd02c1c9bd3fe892ae9cbcfecc6fe3 1565 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 799 837 0.0012 T 17-10-2018 IPR006530 YD repeat VI35_08340 edbd02c1c9bd3fe892ae9cbcfecc6fe3 1565 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 777 815 4.8E-6 T 17-10-2018 IPR006530 YD repeat VI35_08340 edbd02c1c9bd3fe892ae9cbcfecc6fe3 1565 PRINTS PR00394 RHS protein signature 1324 1344 5.8E-15 T 17-10-2018 IPR001826 RHS protein VI35_08340 edbd02c1c9bd3fe892ae9cbcfecc6fe3 1565 PRINTS PR00394 RHS protein signature 1401 1420 5.8E-15 T 17-10-2018 IPR001826 RHS protein VI35_08340 edbd02c1c9bd3fe892ae9cbcfecc6fe3 1565 PRINTS PR00394 RHS protein signature 1378 1398 5.8E-15 T 17-10-2018 IPR001826 RHS protein VI35_08340 edbd02c1c9bd3fe892ae9cbcfecc6fe3 1565 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1357 1433 5.0E-29 T 17-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 VI35_16635 566e3aa9418dd59c7f82b5be63ed7ce3 217 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 43 203 1.7E-22 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_16635 566e3aa9418dd59c7f82b5be63ed7ce3 217 Gene3D G3DSA:1.10.3720.10 1 216 9.4E-54 T 17-10-2018 IPR035906 MetI-like superfamily VI35_16635 566e3aa9418dd59c7f82b5be63ed7ce3 217 SUPERFAMILY SSF161098 8 200 8.37E-47 T 17-10-2018 IPR035906 MetI-like superfamily VI35_09905 8a4b70209cea48f7375d58748ddc408e 436 TIGRFAM TIGR00115 tig: trigger factor 11 413 5.6E-140 T 17-10-2018 IPR005215 Trigger factor GO:0015031 VI35_09905 8a4b70209cea48f7375d58748ddc408e 436 Gene3D G3DSA:3.30.70.1050 1 115 9.5E-40 T 17-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 VI35_09905 8a4b70209cea48f7375d58748ddc408e 436 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 158 229 2.5E-14 T 17-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain VI35_09905 8a4b70209cea48f7375d58748ddc408e 436 SUPERFAMILY SSF102735 1 129 1.57E-38 T 17-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 VI35_09905 8a4b70209cea48f7375d58748ddc408e 436 PIRSF PIRSF003095 1 434 1.9E-122 T 17-10-2018 IPR005215 Trigger factor GO:0015031 VI35_09905 8a4b70209cea48f7375d58748ddc408e 436 SUPERFAMILY SSF109998 248 430 4.32E-50 T 17-10-2018 IPR027304 Trigger factor/SurA domain superfamily VI35_09905 8a4b70209cea48f7375d58748ddc408e 436 Gene3D G3DSA:3.10.50.40 150 246 1.4E-102 T 17-10-2018 VI35_09905 8a4b70209cea48f7375d58748ddc408e 436 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 262 413 9.6E-39 T 17-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 VI35_09905 8a4b70209cea48f7375d58748ddc408e 436 Hamap MF_00303 Trigger factor [tig]. 1 419 21.157 T 17-10-2018 IPR005215 Trigger factor GO:0015031 VI35_09905 8a4b70209cea48f7375d58748ddc408e 436 Gene3D G3DSA:1.10.3120.10 116 418 1.4E-102 T 17-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 VI35_09905 8a4b70209cea48f7375d58748ddc408e 436 Pfam PF05697 Bacterial trigger factor protein (TF) 1 143 7.2E-41 T 17-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 VI35_09905 8a4b70209cea48f7375d58748ddc408e 436 SUPERFAMILY SSF54534 89 241 3.54E-35 T 17-10-2018 VI35_16950 3222f1eddca6da8b290ff297b2c24823 119 Pfam PF16068 Domain of unknown function (DUF4810) 26 110 2.2E-32 T 17-10-2018 IPR014508 Uncharacterised conserved protein withTPR-like repeats VI35_16950 3222f1eddca6da8b290ff297b2c24823 119 PIRSF PIRSF020555 1 119 1.3E-42 T 17-10-2018 IPR014508 Uncharacterised conserved protein withTPR-like repeats VI35_01095 9f66bf91877a078d0541dba79ac967d5 223 Pfam PF13309 HTH domain 152 213 1.6E-16 T 17-10-2018 IPR039445 Transcriptional regulator DauR-like, HTH domain VI35_01095 9f66bf91877a078d0541dba79ac967d5 223 Pfam PF08348 YheO-like PAS domain 22 126 3.2E-32 T 17-10-2018 IPR013559 YheO-like VI35_01095 9f66bf91877a078d0541dba79ac967d5 223 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 20 140 4.0E-28 T 17-10-2018 IPR013559 YheO-like VI35_12790 fdba622a251315cb50f98d9adc769e7b 269 Pfam PF01416 tRNA pseudouridine synthase 8 102 4.1E-10 T 17-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_12790 fdba622a251315cb50f98d9adc769e7b 269 Pfam PF01416 tRNA pseudouridine synthase 144 244 3.2E-29 T 17-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_12790 fdba622a251315cb50f98d9adc769e7b 269 SUPERFAMILY SSF55120 1 254 7.48E-93 T 17-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_12790 fdba622a251315cb50f98d9adc769e7b 269 Gene3D G3DSA:3.30.70.580 1 104 1.2E-41 T 17-10-2018 VI35_12790 fdba622a251315cb50f98d9adc769e7b 269 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 2 238 3.6E-76 T 17-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_12790 fdba622a251315cb50f98d9adc769e7b 269 Gene3D G3DSA:3.30.70.660 105 242 4.0E-48 T 17-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 VI35_12790 fdba622a251315cb50f98d9adc769e7b 269 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 1 243 35.4 T 17-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_12790 fdba622a251315cb50f98d9adc769e7b 269 PIRSF PIRSF001430 1 251 3.5E-79 T 17-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_02310 31082bc0c51100adc4db5fb30e256474 204 Gene3D G3DSA:3.40.50.300 1 203 7.6E-70 T 17-10-2018 VI35_02310 31082bc0c51100adc4db5fb30e256474 204 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 1 192 28.041 T 17-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 VI35_02310 31082bc0c51100adc4db5fb30e256474 204 SUPERFAMILY SSF52540 1 191 7.95E-45 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_02310 31082bc0c51100adc4db5fb30e256474 204 Pfam PF01121 Dephospho-CoA kinase 2 179 1.0E-71 T 17-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 VI35_02310 31082bc0c51100adc4db5fb30e256474 204 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 3 178 1.0E-63 T 17-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 VI35_01315 5f58abea7b0f1e099da234e7299ac968 1342 Gene3D G3DSA:2.40.270.10 1035 1242 9.3E-88 T 17-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_01315 5f58abea7b0f1e099da234e7299ac968 1342 Gene3D G3DSA:2.40.50.100 714 788 4.2E-32 T 17-10-2018 VI35_01315 5f58abea7b0f1e099da234e7299ac968 1342 Pfam PF04560 RNA polymerase Rpb2, domain 7 1266 1340 3.6E-27 T 17-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_01315 5f58abea7b0f1e099da234e7299ac968 1342 Pfam PF04563 RNA polymerase beta subunit 26 500 4.9E-55 T 17-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_01315 5f58abea7b0f1e099da234e7299ac968 1342 Gene3D G3DSA:2.40.50.150 833 956 1.0E-43 T 17-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_01315 5f58abea7b0f1e099da234e7299ac968 1342 Pfam PF10385 RNA polymerase beta subunit external 1 domain 591 656 1.7E-23 T 17-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_01315 5f58abea7b0f1e099da234e7299ac968 1342 Gene3D G3DSA:3.90.1110.10 302 438 2.7E-36 T 17-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_01315 5f58abea7b0f1e099da234e7299ac968 1342 Pfam PF04561 RNA polymerase Rpb2, domain 2 152 223 1.5E-6 T 17-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_01315 5f58abea7b0f1e099da234e7299ac968 1342 Pfam PF04561 RNA polymerase Rpb2, domain 2 340 454 1.0E-17 T 17-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_01315 5f58abea7b0f1e099da234e7299ac968 1342 Pfam PF04565 RNA polymerase Rpb2, domain 3 513 580 6.8E-30 T 17-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_01315 5f58abea7b0f1e099da234e7299ac968 1342 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1342 12.313 T 17-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_01315 5f58abea7b0f1e099da234e7299ac968 1342 Gene3D G3DSA:3.90.1100.10 439 626 2.7E-70 T 17-10-2018 VI35_01315 5f58abea7b0f1e099da234e7299ac968 1342 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 8 1339 0.0 T 17-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_01315 5f58abea7b0f1e099da234e7299ac968 1342 Gene3D G3DSA:2.40.270.10 790 832 4.7E-7 T 17-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_01315 5f58abea7b0f1e099da234e7299ac968 1342 Gene3D G3DSA:3.90.1800.10 1252 1305 8.2E-11 T 17-10-2018 VI35_01315 5f58abea7b0f1e099da234e7299ac968 1342 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1063 1075 - T 17-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_01315 5f58abea7b0f1e099da234e7299ac968 1342 Pfam PF00562 RNA polymerase Rpb2, domain 6 717 1264 3.7E-155 T 17-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VI35_01315 5f58abea7b0f1e099da234e7299ac968 1342 SUPERFAMILY SSF64484 11 1340 0.0 T 17-10-2018 VI35_01315 5f58abea7b0f1e099da234e7299ac968 1342 Gene3D G3DSA:3.90.1100.10 645 713 3.6E-21 T 17-10-2018 VI35_01315 5f58abea7b0f1e099da234e7299ac968 1342 Gene3D G3DSA:3.90.1100.10 18 174 1.8E-58 T 17-10-2018 VI35_03435 aa787e24fa4f7a45317b4c93e9d32973 858 SUPERFAMILY SSF49299 574 656 8.11E-16 T 17-10-2018 IPR035986 PKD domain superfamily VI35_03435 aa787e24fa4f7a45317b4c93e9d32973 858 SMART SM00089 578 656 5.3E-12 T 17-10-2018 IPR022409 PKD/Chitinase domain VI35_03435 aa787e24fa4f7a45317b4c93e9d32973 858 Gene3D G3DSA:2.60.40.1180 375 460 7.3E-28 T 17-10-2018 IPR013780 Glycosyl hydrolase, all-beta VI35_03435 aa787e24fa4f7a45317b4c93e9d32973 858 Pfam PF00801 PKD domain 586 644 1.3E-7 T 17-10-2018 IPR000601 PKD domain VI35_03435 aa787e24fa4f7a45317b4c93e9d32973 858 SUPERFAMILY SSF51011 374 458 8.64E-30 T 17-10-2018 VI35_03435 aa787e24fa4f7a45317b4c93e9d32973 858 SMART SM00642 26 369 3.4E-77 T 17-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VI35_03435 aa787e24fa4f7a45317b4c93e9d32973 858 Gene3D G3DSA:2.60.40.10 568 657 7.5E-18 T 17-10-2018 IPR013783 Immunoglobulin-like fold VI35_03435 aa787e24fa4f7a45317b4c93e9d32973 858 SMART SM00632 378 460 3.7E-32 T 17-10-2018 IPR031319 Alpha-amylase, C-terminal domain Reactome: R-HSA-189085 VI35_03435 aa787e24fa4f7a45317b4c93e9d32973 858 Gene3D G3DSA:3.20.20.80 18 374 7.2E-129 T 17-10-2018 VI35_03435 aa787e24fa4f7a45317b4c93e9d32973 858 SUPERFAMILY SSF51445 24 371 7.76E-73 T 17-10-2018 IPR017853 Glycoside hydrolase superfamily VI35_03435 aa787e24fa4f7a45317b4c93e9d32973 858 PRINTS PR00110 Alpha-amylase signature 278 290 4.1E-14 T 17-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 VI35_03435 aa787e24fa4f7a45317b4c93e9d32973 858 PRINTS PR00110 Alpha-amylase signature 192 203 4.1E-14 T 17-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 VI35_03435 aa787e24fa4f7a45317b4c93e9d32973 858 PRINTS PR00110 Alpha-amylase signature 103 114 4.1E-14 T 17-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 VI35_03435 aa787e24fa4f7a45317b4c93e9d32973 858 PRINTS PR00110 Alpha-amylase signature 70 87 4.1E-14 T 17-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 VI35_03435 aa787e24fa4f7a45317b4c93e9d32973 858 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 381 455 1.2E-12 T 17-10-2018 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 VI35_03435 aa787e24fa4f7a45317b4c93e9d32973 858 Pfam PF00128 Alpha amylase, catalytic domain 84 273 1.2E-9 T 17-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VI35_01500 c13ccbefd8d1ff5a8d00b59d77232f61 285 Gene3D G3DSA:1.10.10.60 3 62 4.2E-13 T 17-10-2018 VI35_01500 c13ccbefd8d1ff5a8d00b59d77232f61 285 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 72 87 7.0E-5 T 17-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VI35_01500 c13ccbefd8d1ff5a8d00b59d77232f61 285 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 87 103 7.0E-5 T 17-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VI35_01500 c13ccbefd8d1ff5a8d00b59d77232f61 285 SMART SM00342 20 103 1.4E-27 T 17-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VI35_01500 c13ccbefd8d1ff5a8d00b59d77232f61 285 Gene3D G3DSA:1.10.10.60 63 111 7.9E-13 T 17-10-2018 VI35_01500 c13ccbefd8d1ff5a8d00b59d77232f61 285 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 57 99 - T 17-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VI35_01500 c13ccbefd8d1ff5a8d00b59d77232f61 285 SMART SM00871 136 285 1.3E-20 T 17-10-2018 IPR010499 Bacterial transcription activator, effector binding VI35_01500 c13ccbefd8d1ff5a8d00b59d77232f61 285 Pfam PF12833 Helix-turn-helix domain 26 104 1.0E-21 T 17-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VI35_01500 c13ccbefd8d1ff5a8d00b59d77232f61 285 SUPERFAMILY SSF46689 6 52 2.11E-5 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_01500 c13ccbefd8d1ff5a8d00b59d77232f61 285 SUPERFAMILY SSF55136 141 272 4.53E-26 T 17-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily VI35_01500 c13ccbefd8d1ff5a8d00b59d77232f61 285 Pfam PF06445 GyrI-like small molecule binding domain 141 270 2.3E-18 T 17-10-2018 IPR029442 GyrI-like small molecule binding domain VI35_01500 c13ccbefd8d1ff5a8d00b59d77232f61 285 Gene3D G3DSA:3.20.80.10 137 285 2.3E-28 T 17-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily VI35_01500 c13ccbefd8d1ff5a8d00b59d77232f61 285 SUPERFAMILY SSF46689 56 105 9.86E-12 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_12215 2fb40d1a42661b770b9c2b547e1588a0 321 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 208 221 - T 17-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12215 2fb40d1a42661b770b9c2b547e1588a0 321 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 53 68 - T 17-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12215 2fb40d1a42661b770b9c2b547e1588a0 321 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 7 320 23.997 T 17-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12215 2fb40d1a42661b770b9c2b547e1588a0 321 Pfam PF00146 NADH dehydrogenase 14 314 4.3E-120 T 17-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_01110 702c22ce0d3dedcf8a641c3e43a501c1 326 SUPERFAMILY SSF55174 17 70 1.08E-10 T 17-10-2018 VI35_01110 702c22ce0d3dedcf8a641c3e43a501c1 326 Pfam PF01479 S4 domain 18 65 4.8E-9 T 17-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_01110 702c22ce0d3dedcf8a641c3e43a501c1 326 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 135 149 - T 17-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_01110 702c22ce0d3dedcf8a641c3e43a501c1 326 Pfam PF00849 RNA pseudouridylate synthase 92 242 1.0E-30 T 17-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_01110 702c22ce0d3dedcf8a641c3e43a501c1 326 Gene3D G3DSA:3.10.290.10 2 76 1.0E-19 T 17-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 VI35_01110 702c22ce0d3dedcf8a641c3e43a501c1 326 SMART SM00363 18 76 1.4E-6 T 17-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_01110 702c22ce0d3dedcf8a641c3e43a501c1 326 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 15 313 1.2E-103 T 17-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_01110 702c22ce0d3dedcf8a641c3e43a501c1 326 SUPERFAMILY SSF55120 78 318 1.15E-79 T 17-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_01110 702c22ce0d3dedcf8a641c3e43a501c1 326 Gene3D G3DSA:3.30.2350.10 84 316 1.7E-73 T 17-10-2018 VI35_18225 76dbe88adbcf899e2a2db16080a40d4c 362 Pfam PF00656 Caspase domain 11 257 2.7E-22 T 17-10-2018 VI35_18225 76dbe88adbcf899e2a2db16080a40d4c 362 Gene3D G3DSA:3.40.50.1460 10 262 1.5E-33 T 17-10-2018 VI35_18225 76dbe88adbcf899e2a2db16080a40d4c 362 SUPERFAMILY SSF52129 7 255 2.3E-17 T 17-10-2018 IPR029030 Caspase-like domain superfamily VI35_15725 80cca37a9acf857d5fb82ddc8cbc076f 262 Hamap MF_00427 Na(+)-translocating NADH-quinone reductase subunit C [nqrC]. 6 262 35.879 T 17-10-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0010181|GO:0016021|GO:0016655 VI35_15725 80cca37a9acf857d5fb82ddc8cbc076f 262 PIRSF PIRSF009437 1 260 2.1E-97 T 17-10-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0010181|GO:0016021|GO:0016655 VI35_15725 80cca37a9acf857d5fb82ddc8cbc076f 262 Pfam PF04205 FMN-binding domain 147 241 4.5E-15 T 17-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 VI35_15725 80cca37a9acf857d5fb82ddc8cbc076f 262 SMART SM00900 147 245 3.1E-31 T 17-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 VI35_15725 80cca37a9acf857d5fb82ddc8cbc076f 262 TIGRFAM TIGR01938 nqrC: NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit 5 253 3.9E-87 T 17-10-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0010181|GO:0016021|GO:0016655 VI35_07545 c0d1faeefc7a901c28980ba872275384 188 Pfam PF04060 Putative Fe-S cluster 44 75 6.9E-14 T 17-10-2018 IPR007202 4Fe-4S domain GO:0051536 VI35_07545 c0d1faeefc7a901c28980ba872275384 188 Gene3D G3DSA:3.30.70.20 84 182 2.4E-20 T 17-10-2018 VI35_07545 c0d1faeefc7a901c28980ba872275384 188 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 116 127 - T 17-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VI35_07545 c0d1faeefc7a901c28980ba872275384 188 Gene3D G3DSA:1.10.15.40 39 83 3.3E-7 T 17-10-2018 VI35_07545 c0d1faeefc7a901c28980ba872275384 188 Pfam PF14697 4Fe-4S dicluster domain 109 163 2.0E-17 T 17-10-2018 VI35_07545 c0d1faeefc7a901c28980ba872275384 188 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 3 180 1.3E-84 T 17-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 VI35_07545 c0d1faeefc7a901c28980ba872275384 188 PIRSF PIRSF005784 3 188 4.3E-86 T 17-10-2018 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0022900|GO:0051536 VI35_07545 c0d1faeefc7a901c28980ba872275384 188 Hamap MF_00463 Ion-translocating oxidoreductase complex subunit B [rsxB]. 4 168 24.846 T 17-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 VI35_07545 c0d1faeefc7a901c28980ba872275384 188 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 146 157 - T 17-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VI35_07545 c0d1faeefc7a901c28980ba872275384 188 SUPERFAMILY SSF54862 37 175 2.71E-30 T 17-10-2018 VI35_13770 5722ce24b50c9f88dabef627d3d6a2c9 69 Pfam PF06568 Domain of unknown function (DUF1127) 29 58 1.6E-9 T 17-10-2018 IPR009506 Protein of unknown function DUF1127 VI35_13875 f0a3c067b1e500f042d2f1989d0abf71 357 TIGRFAM TIGR03569 NeuB_NnaB: N-acetylneuraminate synthase 3 355 1.3E-147 T 17-10-2018 IPR020007 N-acetylneuraminate synthase KEGG: 00520+2.5.1.101|MetaCyc: PWY-6749|MetaCyc: PWY-7131 VI35_13875 f0a3c067b1e500f042d2f1989d0abf71 357 Pfam PF03102 NeuB family 22 289 5.5E-98 T 17-10-2018 IPR013132 N-acetylneuraminic acid synthase, N-terminal GO:0016051 Reactome: R-HSA-4085001 VI35_13875 f0a3c067b1e500f042d2f1989d0abf71 357 SUPERFAMILY SSF51569 3 313 1.83E-78 T 17-10-2018 VI35_13875 f0a3c067b1e500f042d2f1989d0abf71 357 Gene3D G3DSA:3.20.20.70 1 287 5.1E-94 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_13875 f0a3c067b1e500f042d2f1989d0abf71 357 SMART SM00858 303 357 0.0032 T 17-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 VI35_13875 f0a3c067b1e500f042d2f1989d0abf71 357 Gene3D G3DSA:3.90.1210.10 292 357 2.8E-19 T 17-10-2018 VI35_13875 f0a3c067b1e500f042d2f1989d0abf71 357 SUPERFAMILY SSF51269 295 356 7.72E-18 T 17-10-2018 IPR036732 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain superfamily Reactome: R-HSA-4085001 VI35_17885 ab1111623bff6b42480349934aefed36 100 SUPERFAMILY SSF46785 9 96 3.42E-26 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_17885 ab1111623bff6b42480349934aefed36 100 SMART SM00418 15 93 7.4E-26 T 17-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VI35_17885 ab1111623bff6b42480349934aefed36 100 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 49 64 3.5E-13 T 17-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VI35_17885 ab1111623bff6b42480349934aefed36 100 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 17 32 3.5E-13 T 17-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VI35_17885 ab1111623bff6b42480349934aefed36 100 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 64 79 3.5E-13 T 17-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VI35_17885 ab1111623bff6b42480349934aefed36 100 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 36 47 3.5E-13 T 17-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VI35_17885 ab1111623bff6b42480349934aefed36 100 Gene3D G3DSA:1.10.10.10 6 100 8.9E-28 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_17885 ab1111623bff6b42480349934aefed36 100 Pfam PF01022 Bacterial regulatory protein, arsR family 23 67 6.5E-13 T 17-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VI35_16195 1bba20b936ad7eb7722a4741e8458755 635 SUPERFAMILY SSF53850 82 283 1.22E-8 T 17-10-2018 VI35_16195 1bba20b936ad7eb7722a4741e8458755 635 SUPERFAMILY SSF55874 454 625 6.55E-23 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_16195 1bba20b936ad7eb7722a4741e8458755 635 Gene3D G3DSA:3.40.190.10 52 136 1.2E-12 T 17-10-2018 VI35_16195 1bba20b936ad7eb7722a4741e8458755 635 SMART SM00388 387 461 1.2E-5 T 17-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VI35_16195 1bba20b936ad7eb7722a4741e8458755 635 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 506 620 3.7E-10 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_16195 1bba20b936ad7eb7722a4741e8458755 635 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 52 294 8.3E-31 T 17-10-2018 VI35_16195 1bba20b936ad7eb7722a4741e8458755 635 Gene3D G3DSA:3.40.190.10 137 244 1.2E-12 T 17-10-2018 VI35_16195 1bba20b936ad7eb7722a4741e8458755 635 Pfam PF00512 His Kinase A (phospho-acceptor) domain 388 454 3.0E-8 T 17-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VI35_16195 1bba20b936ad7eb7722a4741e8458755 635 SMART SM00387 505 622 1.8E-14 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_16195 1bba20b936ad7eb7722a4741e8458755 635 PRINTS PR00344 Bacterial sensor protein C-terminal signature 582 600 2.8E-7 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_16195 1bba20b936ad7eb7722a4741e8458755 635 PRINTS PR00344 Bacterial sensor protein C-terminal signature 554 568 2.8E-7 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_16195 1bba20b936ad7eb7722a4741e8458755 635 Gene3D G3DSA:1.10.287.130 365 457 7.6E-17 T 17-10-2018 VI35_16195 1bba20b936ad7eb7722a4741e8458755 635 Gene3D G3DSA:3.30.565.10 465 623 5.5E-18 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_16195 1bba20b936ad7eb7722a4741e8458755 635 SUPERFAMILY SSF47384 381 454 1.24E-7 T 17-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VI35_09740 853a1a0f776809b188ca0d5c4b425bc9 515 Pfam PF00989 PAS fold 81 123 7.1E-5 T 17-10-2018 IPR013767 PAS fold GO:0006355 VI35_09740 853a1a0f776809b188ca0d5c4b425bc9 515 SUPERFAMILY SSF46689 456 513 2.45E-10 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_09740 853a1a0f776809b188ca0d5c4b425bc9 515 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 292 307 - T 17-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VI35_09740 853a1a0f776809b188ca0d5c4b425bc9 515 TIGRFAM TIGR04381 HTH_TypR: TyrR family helix-turn-helix domain 467 514 1.0E-28 T 17-10-2018 IPR030828 TyrR family, helix-turn-helix domain GO:0003677 VI35_09740 853a1a0f776809b188ca0d5c4b425bc9 515 SUPERFAMILY SSF55785 81 145 1.12E-8 T 17-10-2018 IPR035965 PAS domain superfamily VI35_09740 853a1a0f776809b188ca0d5c4b425bc9 515 SUPERFAMILY SSF55021 2 69 3.14E-7 T 17-10-2018 VI35_09740 853a1a0f776809b188ca0d5c4b425bc9 515 Pfam PF00158 Sigma-54 interaction domain 208 372 5.3E-61 T 17-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VI35_09740 853a1a0f776809b188ca0d5c4b425bc9 515 SMART SM00382 226 370 1.5E-10 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_09740 853a1a0f776809b188ca0d5c4b425bc9 515 Gene3D G3DSA:1.10.8.60 377 444 6.4E-22 T 17-10-2018 VI35_09740 853a1a0f776809b188ca0d5c4b425bc9 515 SMART SM00091 80 146 1.2E-5 T 17-10-2018 IPR000014 PAS domain VI35_09740 853a1a0f776809b188ca0d5c4b425bc9 515 Gene3D G3DSA:3.30.450.20 82 190 5.7E-23 T 17-10-2018 VI35_09740 853a1a0f776809b188ca0d5c4b425bc9 515 Gene3D G3DSA:3.40.50.300 196 376 3.4E-62 T 17-10-2018 VI35_09740 853a1a0f776809b188ca0d5c4b425bc9 515 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 230 243 - T 17-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VI35_09740 853a1a0f776809b188ca0d5c4b425bc9 515 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 419 428 - T 17-10-2018 IPR025944 Sigma-54 interaction domain, conserved site VI35_09740 853a1a0f776809b188ca0d5c4b425bc9 515 Gene3D G3DSA:3.30.70.260 1 80 9.2E-29 T 17-10-2018 VI35_09740 853a1a0f776809b188ca0d5c4b425bc9 515 SUPERFAMILY SSF52540 210 447 6.29E-67 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_09740 853a1a0f776809b188ca0d5c4b425bc9 515 Gene3D G3DSA:1.10.10.60 455 514 2.2E-27 T 17-10-2018 VI35_06525 49f1f47f9ef6e0b19b4c13295ec3a5d1 381 SUPERFAMILY SSF51338 1 53 1.39E-15 T 17-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VI35_06525 49f1f47f9ef6e0b19b4c13295ec3a5d1 381 SUPERFAMILY SSF51556 54 350 9.95E-99 T 17-10-2018 IPR032466 Metal-dependent hydrolase VI35_06525 49f1f47f9ef6e0b19b4c13295ec3a5d1 381 Gene3D G3DSA:3.20.20.140 55 344 5.2E-133 T 17-10-2018 VI35_06525 49f1f47f9ef6e0b19b4c13295ec3a5d1 381 Gene3D G3DSA:2.30.40.10 6 376 5.2E-133 T 17-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VI35_06525 49f1f47f9ef6e0b19b4c13295ec3a5d1 381 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 1 376 1.1E-140 T 17-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 VI35_06525 49f1f47f9ef6e0b19b4c13295ec3a5d1 381 Pfam PF01979 Amidohydrolase family 51 376 5.4E-37 T 17-10-2018 IPR006680 Amidohydrolase-related GO:0016787 VI35_06525 49f1f47f9ef6e0b19b4c13295ec3a5d1 381 PIRSF PIRSF038994 1 381 2.6E-114 T 17-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 VI35_08675 15d50345977b73e0c574345f7c1984be 395 Gene3D G3DSA:3.60.120.10 5 390 2.0E-120 T 17-10-2018 IPR005801 ADC synthase GO:0009058 VI35_08675 15d50345977b73e0c574345f7c1984be 395 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 119 387 7.0E-94 T 17-10-2018 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 VI35_08675 15d50345977b73e0c574345f7c1984be 395 SUPERFAMILY SSF56322 55 389 6.8E-98 T 17-10-2018 IPR005801 ADC synthase GO:0009058 VI35_08675 15d50345977b73e0c574345f7c1984be 395 Pfam PF00425 chorismate binding enzyme 125 379 8.0E-77 T 17-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal VI35_00310 77419bf82638e5d7b0e72e51b02cd7ed 242 Gene3D G3DSA:2.40.50.40 135 203 3.1E-20 T 17-10-2018 VI35_00310 77419bf82638e5d7b0e72e51b02cd7ed 242 SMART SM00448 2 113 6.7E-25 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_00310 77419bf82638e5d7b0e72e51b02cd7ed 242 Gene3D G3DSA:3.40.50.2300 1 125 1.8E-30 T 17-10-2018 VI35_00310 77419bf82638e5d7b0e72e51b02cd7ed 242 Pfam PF00072 Response regulator receiver domain 5 113 2.7E-24 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_00310 77419bf82638e5d7b0e72e51b02cd7ed 242 SUPERFAMILY SSF52172 1 116 2.56E-27 T 17-10-2018 IPR011006 CheY-like superfamily VI35_00310 77419bf82638e5d7b0e72e51b02cd7ed 242 Pfam PF04397 LytTr DNA-binding domain 144 240 5.5E-31 T 17-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 VI35_00310 77419bf82638e5d7b0e72e51b02cd7ed 242 SMART SM00850 143 241 5.3E-37 T 17-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 VI35_06420 67580756e91bbe0b7ccd80f01697fbd7 194 Pfam PF06042 Nucleotidyltransferase 33 191 1.2E-52 T 17-10-2018 IPR009267 Putative nucleotidyltransferase VI35_20970 633dad91b6b342166af8106d749b984a 261 Pfam PF01026 TatD related DNase 2 256 2.0E-64 T 17-10-2018 IPR001130 TatD family GO:0016788 VI35_20970 633dad91b6b342166af8106d749b984a 261 PIRSF PIRSF005902 1 259 3.1E-71 T 17-10-2018 IPR001130 TatD family GO:0016788 VI35_20970 633dad91b6b342166af8106d749b984a 261 Gene3D G3DSA:3.20.20.140 1 260 4.7E-92 T 17-10-2018 VI35_20970 633dad91b6b342166af8106d749b984a 261 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 124 134 - T 17-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 VI35_20970 633dad91b6b342166af8106d749b984a 261 SUPERFAMILY SSF51556 1 257 2.13E-80 T 17-10-2018 IPR032466 Metal-dependent hydrolase VI35_05105 85aa91143001a4eb506cac25ca8d358f 522 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 17 501 23.689 T 17-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 VI35_05105 85aa91143001a4eb506cac25ca8d358f 522 Pfam PF00795 Carbon-nitrogen hydrolase 228 482 3.4E-34 T 17-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 VI35_05105 85aa91143001a4eb506cac25ca8d358f 522 SUPERFAMILY SSF56317 225 496 2.49E-41 T 17-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily VI35_05105 85aa91143001a4eb506cac25ca8d358f 522 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 70 463 4.1E-93 T 17-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 VI35_05105 85aa91143001a4eb506cac25ca8d358f 522 Gene3D G3DSA:3.60.110.10 215 487 9.7E-15 T 17-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily VI35_20725 caa145364c6bb22a79d08154615696cb 81 Gene3D G3DSA:3.30.110.40 2 81 4.9E-30 T 17-10-2018 IPR036868 TusA-like domain superfamily VI35_20725 caa145364c6bb22a79d08154615696cb 81 Pfam PF01206 Sulfurtransferase TusA 10 79 3.2E-24 T 17-10-2018 IPR001455 TusA-like domain VI35_20725 caa145364c6bb22a79d08154615696cb 81 Hamap MF_00413 Sulfur carrier protein TusA [tusA]. 3 81 27.947 T 17-10-2018 IPR022931 Sulfur carrier protein TusA GO:0002143|GO:0097163 VI35_20725 caa145364c6bb22a79d08154615696cb 81 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 12 36 - T 17-10-2018 IPR001455 TusA-like domain VI35_20725 caa145364c6bb22a79d08154615696cb 81 SUPERFAMILY SSF64307 6 80 6.41E-26 T 17-10-2018 IPR036868 TusA-like domain superfamily VI35_02445 a755a0ea62181b81c8308007cbbcfda3 236 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 17 209 1.9E-68 T 17-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 VI35_02445 a755a0ea62181b81c8308007cbbcfda3 236 SMART SM01207 26 201 3.7E-81 T 17-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 VI35_02445 a755a0ea62181b81c8308007cbbcfda3 236 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 23 209 19.375 T 17-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 VI35_02445 a755a0ea62181b81c8308007cbbcfda3 236 Pfam PF02660 Glycerol-3-phosphate acyltransferase 27 200 2.9E-48 T 17-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 VI35_03085 7800f124af343f9e2e9f71fa88f6c63a 854 Gene3D G3DSA:2.60.40.1080 561 648 1.2E-23 T 17-10-2018 VI35_03085 7800f124af343f9e2e9f71fa88f6c63a 854 SUPERFAMILY SSF49373 61 125 7.46E-8 T 17-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments VI35_03085 7800f124af343f9e2e9f71fa88f6c63a 854 SUPERFAMILY SSF49373 390 472 7.85E-5 T 17-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments VI35_03085 7800f124af343f9e2e9f71fa88f6c63a 854 SMART SM00635 216 297 7.2E-10 T 17-10-2018 IPR003343 Bacterial Ig-like, group 2 VI35_03085 7800f124af343f9e2e9f71fa88f6c63a 854 SMART SM00635 41 123 3.1E-5 T 17-10-2018 IPR003343 Bacterial Ig-like, group 2 VI35_03085 7800f124af343f9e2e9f71fa88f6c63a 854 SMART SM00635 303 384 5.6E-14 T 17-10-2018 IPR003343 Bacterial Ig-like, group 2 VI35_03085 7800f124af343f9e2e9f71fa88f6c63a 854 SMART SM00635 390 470 1.7E-10 T 17-10-2018 IPR003343 Bacterial Ig-like, group 2 VI35_03085 7800f124af343f9e2e9f71fa88f6c63a 854 SMART SM00635 476 556 1.7E-12 T 17-10-2018 IPR003343 Bacterial Ig-like, group 2 VI35_03085 7800f124af343f9e2e9f71fa88f6c63a 854 SMART SM00635 562 643 3.2E-15 T 17-10-2018 IPR003343 Bacterial Ig-like, group 2 VI35_03085 7800f124af343f9e2e9f71fa88f6c63a 854 SMART SM00635 129 210 6.6E-9 T 17-10-2018 IPR003343 Bacterial Ig-like, group 2 VI35_03085 7800f124af343f9e2e9f71fa88f6c63a 854 SUPERFAMILY SSF49373 218 299 1.49E-5 T 17-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments VI35_03085 7800f124af343f9e2e9f71fa88f6c63a 854 SUPERFAMILY SSF49373 562 645 2.43E-8 T 17-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments VI35_03085 7800f124af343f9e2e9f71fa88f6c63a 854 SUPERFAMILY SSF49373 303 386 2.12E-7 T 17-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments VI35_03085 7800f124af343f9e2e9f71fa88f6c63a 854 Pfam PF02368 Bacterial Ig-like domain (group 2) 564 637 4.9E-13 T 17-10-2018 IPR003343 Bacterial Ig-like, group 2 VI35_03085 7800f124af343f9e2e9f71fa88f6c63a 854 Pfam PF02368 Bacterial Ig-like domain (group 2) 219 298 3.1E-10 T 17-10-2018 IPR003343 Bacterial Ig-like, group 2 VI35_03085 7800f124af343f9e2e9f71fa88f6c63a 854 Pfam PF02368 Bacterial Ig-like domain (group 2) 51 111 7.4E-7 T 17-10-2018 IPR003343 Bacterial Ig-like, group 2 VI35_03085 7800f124af343f9e2e9f71fa88f6c63a 854 Pfam PF02368 Bacterial Ig-like domain (group 2) 478 550 7.6E-10 T 17-10-2018 IPR003343 Bacterial Ig-like, group 2 VI35_03085 7800f124af343f9e2e9f71fa88f6c63a 854 Pfam PF02368 Bacterial Ig-like domain (group 2) 392 464 1.3E-9 T 17-10-2018 IPR003343 Bacterial Ig-like, group 2 VI35_03085 7800f124af343f9e2e9f71fa88f6c63a 854 Pfam PF02368 Bacterial Ig-like domain (group 2) 131 211 1.6E-9 T 17-10-2018 IPR003343 Bacterial Ig-like, group 2 VI35_03085 7800f124af343f9e2e9f71fa88f6c63a 854 Pfam PF02368 Bacterial Ig-like domain (group 2) 305 383 1.4E-12 T 17-10-2018 IPR003343 Bacterial Ig-like, group 2 VI35_03085 7800f124af343f9e2e9f71fa88f6c63a 854 SUPERFAMILY SSF49373 655 733 1.41E-15 T 17-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments VI35_03085 7800f124af343f9e2e9f71fa88f6c63a 854 SUPERFAMILY SSF49373 476 550 2.98E-6 T 17-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments VI35_03085 7800f124af343f9e2e9f71fa88f6c63a 854 SUPERFAMILY SSF49373 129 212 6.51E-5 T 17-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments VI35_03085 7800f124af343f9e2e9f71fa88f6c63a 854 Gene3D G3DSA:2.60.40.1080 476 560 3.0E-23 T 17-10-2018 VI35_03085 7800f124af343f9e2e9f71fa88f6c63a 854 Gene3D G3DSA:2.60.40.1080 303 389 1.9E-23 T 17-10-2018 VI35_03085 7800f124af343f9e2e9f71fa88f6c63a 854 Gene3D G3DSA:2.60.40.1080 216 302 1.9E-21 T 17-10-2018 VI35_03085 7800f124af343f9e2e9f71fa88f6c63a 854 Gene3D G3DSA:2.60.40.1080 129 215 6.0E-21 T 17-10-2018 VI35_03085 7800f124af343f9e2e9f71fa88f6c63a 854 Gene3D G3DSA:2.60.40.1080 390 475 1.5E-21 T 17-10-2018 VI35_03085 7800f124af343f9e2e9f71fa88f6c63a 854 Gene3D G3DSA:2.60.40.1080 35 128 8.0E-20 T 17-10-2018 VI35_03085 7800f124af343f9e2e9f71fa88f6c63a 854 Gene3D G3DSA:2.60.40.1080 653 740 1.6E-26 T 17-10-2018 VI35_08805 f7678d388828af67b149b3a0c84947bc 554 Gene3D G3DSA:3.40.50.12780 12 427 2.3E-86 T 17-10-2018 VI35_08805 f7678d388828af67b149b3a0c84947bc 554 ProSitePatterns PS00455 Putative AMP-binding domain signature. 174 185 - T 17-10-2018 IPR020845 AMP-binding, conserved site VI35_08805 f7678d388828af67b149b3a0c84947bc 554 Pfam PF00501 AMP-binding enzyme 20 432 1.1E-87 T 17-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 VI35_08805 f7678d388828af67b149b3a0c84947bc 554 Gene3D G3DSA:3.30.300.30 428 542 5.0E-6 T 17-10-2018 VI35_08805 f7678d388828af67b149b3a0c84947bc 554 SUPERFAMILY SSF56801 11 540 8.63E-120 T 17-10-2018 VI35_18135 d64c8e8ad90fc7a7fe0daed1dbdfb168 344 SMART SM00382 122 247 0.0033 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_18135 d64c8e8ad90fc7a7fe0daed1dbdfb168 344 Pfam PF00437 Type II/IV secretion system protein 12 268 2.3E-47 T 17-10-2018 IPR001482 Type II/IV secretion system protein VI35_18135 d64c8e8ad90fc7a7fe0daed1dbdfb168 344 Gene3D G3DSA:3.30.450.90 1 100 2.2E-37 T 17-10-2018 VI35_18135 d64c8e8ad90fc7a7fe0daed1dbdfb168 344 SUPERFAMILY SSF52540 5 330 8.14E-75 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_18135 d64c8e8ad90fc7a7fe0daed1dbdfb168 344 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 193 207 - T 17-10-2018 IPR001482 Type II/IV secretion system protein VI35_18135 d64c8e8ad90fc7a7fe0daed1dbdfb168 344 Gene3D G3DSA:3.40.50.300 101 344 5.6E-106 T 17-10-2018 VI35_18135 d64c8e8ad90fc7a7fe0daed1dbdfb168 344 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 342 2.0E-155 T 17-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 VI35_00015 6f8d0234ab0d7e82dbf6773cff88c796 367 ProSitePatterns PS00617 RecF protein signature 1. 117 137 - T 17-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 VI35_00015 6f8d0234ab0d7e82dbf6773cff88c796 367 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 343 9.2E-32 T 17-10-2018 IPR003395 RecF/RecN/SMC, N-terminal VI35_00015 6f8d0234ab0d7e82dbf6773cff88c796 367 SUPERFAMILY SSF52540 3 359 6.32E-39 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_00015 6f8d0234ab0d7e82dbf6773cff88c796 367 Gene3D G3DSA:3.40.50.300 6 332 2.2E-82 T 17-10-2018 VI35_00015 6f8d0234ab0d7e82dbf6773cff88c796 367 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 367 95.292 T 17-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 VI35_00015 6f8d0234ab0d7e82dbf6773cff88c796 367 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 3 356 1.3E-114 T 17-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 VI35_00015 6f8d0234ab0d7e82dbf6773cff88c796 367 Gene3D G3DSA:1.20.1050.90 120 297 2.2E-82 T 17-10-2018 VI35_00015 6f8d0234ab0d7e82dbf6773cff88c796 367 ProSitePatterns PS00618 RecF protein signature 2. 298 316 - T 17-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 VI35_03480 0b5c0c6f142d9a8d5ba5e0701028241b 381 Pfam PF06969 HemN C-terminal domain 305 367 3.2E-8 T 17-10-2018 IPR010723 HemN, C-terminal VI35_03480 0b5c0c6f142d9a8d5ba5e0701028241b 381 Gene3D G3DSA:3.80.30.20 2 291 3.2E-99 T 17-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe VI35_03480 0b5c0c6f142d9a8d5ba5e0701028241b 381 SMART SM00729 6 223 6.6E-53 T 17-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 VI35_03480 0b5c0c6f142d9a8d5ba5e0701028241b 381 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 7 371 1.4E-126 T 17-10-2018 IPR004559 Oxygen-independent coproporphyrinogen III oxidase-like GO:0004109|GO:0005737|GO:0006779|GO:0055114 VI35_03480 0b5c0c6f142d9a8d5ba5e0701028241b 381 Pfam PF04055 Radical SAM superfamily 11 175 2.6E-18 T 17-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VI35_03480 0b5c0c6f142d9a8d5ba5e0701028241b 381 SUPERFAMILY SSF102114 5 379 2.94E-108 T 17-10-2018 VI35_13675 0aefcaa832fc29f51a6779ee1677519e 106 Pfam PF04316 Anti-sigma-28 factor, FlgM 42 95 1.6E-16 T 17-10-2018 IPR031316 Anti-sigma-28 factor FlgM, C-terminal VI35_13675 0aefcaa832fc29f51a6779ee1677519e 106 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 1 98 3.4E-22 T 17-10-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 VI35_13675 0aefcaa832fc29f51a6779ee1677519e 106 SUPERFAMILY SSF101498 1 98 1.44E-18 T 17-10-2018 IPR035890 Anti-sigma-28 factor FlgM superfamily VI35_13800 be4ad8c91c10e0e48514ea4dc3c288b5 184 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 6 175 5.3E-64 T 17-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 VI35_13800 be4ad8c91c10e0e48514ea4dc3c288b5 184 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 1 172 3.0E-51 T 17-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 VI35_13800 be4ad8c91c10e0e48514ea4dc3c288b5 184 Gene3D G3DSA:2.60.120.10 1 179 8.6E-65 T 17-10-2018 IPR014710 RmlC-like jelly roll fold VI35_13800 be4ad8c91c10e0e48514ea4dc3c288b5 184 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 3 176 3.3E-68 T 17-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 VI35_13800 be4ad8c91c10e0e48514ea4dc3c288b5 184 SUPERFAMILY SSF51182 1 177 5.53E-69 T 17-10-2018 IPR011051 RmlC-like cupin domain superfamily VI35_15925 a74dc43a28a6e1f201c5919fdd8a535d 474 Pfam PF03441 FAD binding domain of DNA photolyase 276 469 8.4E-83 T 17-10-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-400253 VI35_15925 a74dc43a28a6e1f201c5919fdd8a535d 474 Pfam PF00875 DNA photolyase 3 169 3.0E-48 T 17-10-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-400253 VI35_15925 a74dc43a28a6e1f201c5919fdd8a535d 474 PRINTS PR00147 DNA photolyase signature 385 399 2.0E-28 T 17-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 VI35_15925 a74dc43a28a6e1f201c5919fdd8a535d 474 PRINTS PR00147 DNA photolyase signature 142 158 2.0E-28 T 17-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 VI35_15925 a74dc43a28a6e1f201c5919fdd8a535d 474 PRINTS PR00147 DNA photolyase signature 346 364 2.0E-28 T 17-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 VI35_15925 a74dc43a28a6e1f201c5919fdd8a535d 474 PRINTS PR00147 DNA photolyase signature 326 342 2.0E-28 T 17-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 VI35_15925 a74dc43a28a6e1f201c5919fdd8a535d 474 ProSitePatterns PS00691 DNA photolyases class 1 signature 2. 346 365 - T 17-10-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal VI35_15925 a74dc43a28a6e1f201c5919fdd8a535d 474 Gene3D G3DSA:3.40.50.620 3 205 2.2E-78 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_15925 a74dc43a28a6e1f201c5919fdd8a535d 474 Gene3D G3DSA:1.10.579.10 294 474 1.4E-80 T 17-10-2018 VI35_15925 a74dc43a28a6e1f201c5919fdd8a535d 474 SUPERFAMILY SSF48173 199 471 1.57E-107 T 17-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 VI35_15925 a74dc43a28a6e1f201c5919fdd8a535d 474 SUPERFAMILY SSF52425 2 191 6.67E-53 T 17-10-2018 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily Reactome: R-HSA-400253 VI35_15925 a74dc43a28a6e1f201c5919fdd8a535d 474 ProSitePatterns PS00394 DNA photolyases class 1 signature 1. 326 338 - T 17-10-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal VI35_15925 a74dc43a28a6e1f201c5919fdd8a535d 474 Gene3D G3DSA:1.25.40.80 131 290 2.2E-78 T 17-10-2018 VI35_00930 14d2f75fe4ee0dcdceefdaa1ef13b000 206 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 40 200 4.3E-28 T 17-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 VI35_00930 14d2f75fe4ee0dcdceefdaa1ef13b000 206 SUPERFAMILY SSF88659 141 201 1.48E-13 T 17-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VI35_00930 14d2f75fe4ee0dcdceefdaa1ef13b000 206 Gene3D G3DSA:1.10.1740.10 24 108 9.6E-25 T 17-10-2018 VI35_00930 14d2f75fe4ee0dcdceefdaa1ef13b000 206 Pfam PF04545 Sigma-70, region 4 152 199 1.6E-13 T 17-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 VI35_00930 14d2f75fe4ee0dcdceefdaa1ef13b000 206 Gene3D G3DSA:1.10.10.10 126 203 3.4E-18 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_00930 14d2f75fe4ee0dcdceefdaa1ef13b000 206 SUPERFAMILY SSF88946 25 124 8.11E-22 T 17-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 VI35_00930 14d2f75fe4ee0dcdceefdaa1ef13b000 206 Pfam PF04542 Sigma-70 region 2 44 111 8.1E-17 T 17-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 VI35_16675 cba90ffcf0ad6d9845cd9b8235027d83 770 Gene3D G3DSA:1.20.120.160 651 770 2.9E-25 T 17-10-2018 IPR036641 HPT domain superfamily GO:0000160 VI35_16675 cba90ffcf0ad6d9845cd9b8235027d83 770 Pfam PF01627 Hpt domain 682 753 6.5E-11 T 17-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VI35_16675 cba90ffcf0ad6d9845cd9b8235027d83 770 SMART SM00448 524 636 2.9E-25 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_16675 cba90ffcf0ad6d9845cd9b8235027d83 770 SUPERFAMILY SSF55785 140 267 8.72E-21 T 17-10-2018 IPR035965 PAS domain superfamily VI35_16675 cba90ffcf0ad6d9845cd9b8235027d83 770 SMART SM00073 671 768 3.8E-4 T 17-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VI35_16675 cba90ffcf0ad6d9845cd9b8235027d83 770 SUPERFAMILY SSF52172 521 640 3.42E-28 T 17-10-2018 IPR011006 CheY-like superfamily VI35_16675 cba90ffcf0ad6d9845cd9b8235027d83 770 Gene3D G3DSA:1.10.287.130 268 345 2.0E-21 T 17-10-2018 VI35_16675 cba90ffcf0ad6d9845cd9b8235027d83 770 Gene3D G3DSA:3.30.450.20 152 267 9.3E-20 T 17-10-2018 VI35_16675 cba90ffcf0ad6d9845cd9b8235027d83 770 PRINTS PR00344 Bacterial sensor protein C-terminal signature 436 450 1.3E-13 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_16675 cba90ffcf0ad6d9845cd9b8235027d83 770 PRINTS PR00344 Bacterial sensor protein C-terminal signature 454 464 1.3E-13 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_16675 cba90ffcf0ad6d9845cd9b8235027d83 770 PRINTS PR00344 Bacterial sensor protein C-terminal signature 469 487 1.3E-13 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_16675 cba90ffcf0ad6d9845cd9b8235027d83 770 PRINTS PR00344 Bacterial sensor protein C-terminal signature 493 506 1.3E-13 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_16675 cba90ffcf0ad6d9845cd9b8235027d83 770 Gene3D G3DSA:3.40.50.2300 511 639 1.5E-29 T 17-10-2018 VI35_16675 cba90ffcf0ad6d9845cd9b8235027d83 770 Gene3D G3DSA:1.10.287.970 1 89 4.7E-36 T 17-10-2018 IPR027460 Aerobic respiration control sensor protein ArcB, transmembrane domain superfamily VI35_16675 cba90ffcf0ad6d9845cd9b8235027d83 770 SMART SM00388 282 347 2.1E-17 T 17-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VI35_16675 cba90ffcf0ad6d9845cd9b8235027d83 770 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 152 276 2.5E-16 T 17-10-2018 IPR000014 PAS domain VI35_16675 cba90ffcf0ad6d9845cd9b8235027d83 770 PIRSF PIRSF003182 1 770 0.0 T 17-10-2018 IPR014409 Signal transduction histidine kinase, hybrid-type, aerobic respiration control ArcB GO:0000155|GO:0000160|GO:0004673|GO:0016021 VI35_16675 cba90ffcf0ad6d9845cd9b8235027d83 770 SUPERFAMILY SSF55874 336 505 9.17E-41 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_16675 cba90ffcf0ad6d9845cd9b8235027d83 770 SMART SM00091 155 221 4.3E-5 T 17-10-2018 IPR000014 PAS domain VI35_16675 cba90ffcf0ad6d9845cd9b8235027d83 770 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 395 506 8.5E-27 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_16675 cba90ffcf0ad6d9845cd9b8235027d83 770 SUPERFAMILY SSF47226 657 768 9.81E-25 T 17-10-2018 IPR036641 HPT domain superfamily GO:0000160 VI35_16675 cba90ffcf0ad6d9845cd9b8235027d83 770 Pfam PF08448 PAS fold 164 271 1.1E-15 T 17-10-2018 IPR013656 PAS fold-4 VI35_16675 cba90ffcf0ad6d9845cd9b8235027d83 770 Gene3D G3DSA:3.30.565.10 348 510 7.3E-46 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_16675 cba90ffcf0ad6d9845cd9b8235027d83 770 SMART SM00387 394 509 7.7E-33 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_16675 cba90ffcf0ad6d9845cd9b8235027d83 770 Pfam PF00512 His Kinase A (phospho-acceptor) domain 283 345 3.0E-15 T 17-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VI35_16675 cba90ffcf0ad6d9845cd9b8235027d83 770 SUPERFAMILY SSF47384 269 347 2.94E-17 T 17-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VI35_16675 cba90ffcf0ad6d9845cd9b8235027d83 770 Pfam PF00072 Response regulator receiver domain 526 635 1.4E-18 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_09575 aed2ad83934cbe62a37df295035c009c 105 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 9 100 28.962 T 17-10-2018 IPR022935 ATP-dependent Clp protease adaptor protein ClpS VI35_09575 aed2ad83934cbe62a37df295035c009c 105 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 23 101 2.8E-34 T 17-10-2018 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 VI35_09575 aed2ad83934cbe62a37df295035c009c 105 Gene3D G3DSA:3.30.1390.10 1 105 1.4E-44 T 17-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like VI35_09575 aed2ad83934cbe62a37df295035c009c 105 SUPERFAMILY SSF54736 20 104 5.75E-34 T 17-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like VI35_04590 d6326f10e2eaf7d8c9cb0b2e7e973b84 512 Pfam PF00152 tRNA synthetases class II (D, K and N) 164 508 5.0E-78 T 17-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_04590 d6326f10e2eaf7d8c9cb0b2e7e973b84 512 SUPERFAMILY SSF50249 14 156 4.5E-46 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_04590 d6326f10e2eaf7d8c9cb0b2e7e973b84 512 PIRSF PIRSF039101 2 512 5.7E-203 T 17-10-2018 IPR034762 Bacterial/eukaryotic lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 VI35_04590 d6326f10e2eaf7d8c9cb0b2e7e973b84 512 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 22 512 45.014 T 17-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 VI35_04590 d6326f10e2eaf7d8c9cb0b2e7e973b84 512 Gene3D G3DSA:3.30.930.10 156 506 2.8E-127 T 17-10-2018 VI35_04590 d6326f10e2eaf7d8c9cb0b2e7e973b84 512 PRINTS PR00982 Lysyl-tRNA synthetase signature 392 408 5.5E-39 T 17-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 VI35_04590 d6326f10e2eaf7d8c9cb0b2e7e973b84 512 PRINTS PR00982 Lysyl-tRNA synthetase signature 200 210 5.5E-39 T 17-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 VI35_04590 d6326f10e2eaf7d8c9cb0b2e7e973b84 512 PRINTS PR00982 Lysyl-tRNA synthetase signature 245 258 5.5E-39 T 17-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 VI35_04590 d6326f10e2eaf7d8c9cb0b2e7e973b84 512 PRINTS PR00982 Lysyl-tRNA synthetase signature 263 280 5.5E-39 T 17-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 VI35_04590 d6326f10e2eaf7d8c9cb0b2e7e973b84 512 PRINTS PR00982 Lysyl-tRNA synthetase signature 216 232 5.5E-39 T 17-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 VI35_04590 d6326f10e2eaf7d8c9cb0b2e7e973b84 512 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 16 512 9.0E-221 T 17-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 VI35_04590 d6326f10e2eaf7d8c9cb0b2e7e973b84 512 Gene3D G3DSA:2.40.50.140 16 155 1.7E-42 T 17-10-2018 VI35_04590 d6326f10e2eaf7d8c9cb0b2e7e973b84 512 SUPERFAMILY SSF55681 163 509 3.38E-115 T 17-10-2018 VI35_04590 d6326f10e2eaf7d8c9cb0b2e7e973b84 512 Pfam PF01336 OB-fold nucleic acid binding domain 69 147 6.1E-17 T 17-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 VI35_05965 76ea4843efe48fe1b18049f5523c6ced 239 Pfam PF04545 Sigma-70, region 4 184 232 3.0E-18 T 17-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 VI35_05965 76ea4843efe48fe1b18049f5523c6ced 239 SUPERFAMILY SSF88946 15 88 7.72E-24 T 17-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 VI35_05965 76ea4843efe48fe1b18049f5523c6ced 239 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 16 234 5.7E-80 T 17-10-2018 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 VI35_05965 76ea4843efe48fe1b18049f5523c6ced 239 PRINTS PR00046 Major sigma-70 factor signature 219 230 2.8E-12 T 17-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VI35_05965 76ea4843efe48fe1b18049f5523c6ced 239 PRINTS PR00046 Major sigma-70 factor signature 204 219 2.8E-12 T 17-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VI35_05965 76ea4843efe48fe1b18049f5523c6ced 239 PRINTS PR00046 Major sigma-70 factor signature 43 56 2.8E-12 T 17-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VI35_05965 76ea4843efe48fe1b18049f5523c6ced 239 PRINTS PR00046 Major sigma-70 factor signature 187 199 2.8E-12 T 17-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VI35_05965 76ea4843efe48fe1b18049f5523c6ced 239 Gene3D G3DSA:1.10.1740.10 2 85 1.1E-28 T 17-10-2018 VI35_05965 76ea4843efe48fe1b18049f5523c6ced 239 SUPERFAMILY SSF88659 89 154 8.83E-12 T 17-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VI35_05965 76ea4843efe48fe1b18049f5523c6ced 239 Pfam PF04539 Sigma-70 region 3 98 139 5.0E-7 T 17-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 VI35_05965 76ea4843efe48fe1b18049f5523c6ced 239 SUPERFAMILY SSF88659 167 237 3.36E-19 T 17-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VI35_05965 76ea4843efe48fe1b18049f5523c6ced 239 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 16 234 6.1E-30 T 17-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 VI35_05965 76ea4843efe48fe1b18049f5523c6ced 239 PIRSF PIRSF000770 3 238 4.5E-33 T 17-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VI35_05965 76ea4843efe48fe1b18049f5523c6ced 239 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 204 230 - T 17-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VI35_05965 76ea4843efe48fe1b18049f5523c6ced 239 Hamap MF_00962 RNA polymerase sigma factor FliA [fliA]. 5 237 63.485 T 17-10-2018 IPR028617 RNA polymerase sigma factor FliA GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 VI35_05965 76ea4843efe48fe1b18049f5523c6ced 239 Gene3D G3DSA:1.20.140.160 87 236 1.2E-40 T 17-10-2018 VI35_05965 76ea4843efe48fe1b18049f5523c6ced 239 Pfam PF04542 Sigma-70 region 2 16 88 5.4E-18 T 17-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 VI35_16565 c8f31b391486e71bfb4776c543756cc0 66 Pfam PF09838 Uncharacterized protein conserved in bacteria (DUF2065) 6 59 4.4E-18 T 17-10-2018 IPR019201 Protein of unknown function DUF2065 VI35_10090 6807254be32b0b777ecd6482e70755af 317 Pfam PF03466 LysR substrate binding domain 94 302 7.8E-41 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_10090 6807254be32b0b777ecd6482e70755af 317 Gene3D G3DSA:3.40.190.290 97 302 2.3E-56 T 17-10-2018 VI35_10090 6807254be32b0b777ecd6482e70755af 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 69 3.8E-20 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_10090 6807254be32b0b777ecd6482e70755af 317 SUPERFAMILY SSF46785 10 93 2.15E-22 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_10090 6807254be32b0b777ecd6482e70755af 317 SUPERFAMILY SSF53850 96 305 2.17E-41 T 17-10-2018 VI35_10090 6807254be32b0b777ecd6482e70755af 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 4.9E-5 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_10090 6807254be32b0b777ecd6482e70755af 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 4.9E-5 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_10090 6807254be32b0b777ecd6482e70755af 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 4.9E-5 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_10090 6807254be32b0b777ecd6482e70755af 317 Gene3D G3DSA:1.10.10.10 8 95 2.2E-27 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_06785 2a9aa6b9874471c9f96294aeca2bc628 191 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 6 174 2.9E-12 T 17-10-2018 IPR003111 Lon, substrate-binding domain VI35_06785 2a9aa6b9874471c9f96294aeca2bc628 191 Gene3D G3DSA:1.10.4060.10 114 190 2.4E-5 T 17-10-2018 VI35_06785 2a9aa6b9874471c9f96294aeca2bc628 191 Gene3D G3DSA:2.30.130.40 3 112 4.3E-25 T 17-10-2018 VI35_06785 2a9aa6b9874471c9f96294aeca2bc628 191 SUPERFAMILY SSF88697 5 189 1.59E-46 T 17-10-2018 IPR015947 PUA-like superfamily VI35_06785 2a9aa6b9874471c9f96294aeca2bc628 191 SMART SM00464 5 187 6.4E-4 T 17-10-2018 IPR003111 Lon, substrate-binding domain VI35_05045 ff0cd137baa0e5c48e4dcb1a89c7a659 307 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 11 174 21.0 T 17-10-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 VI35_05045 ff0cd137baa0e5c48e4dcb1a89c7a659 307 Pfam PF03330 Lytic transglycolase 83 170 8.9E-17 T 17-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain VI35_05045 ff0cd137baa0e5c48e4dcb1a89c7a659 307 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 84 175 1.5E-35 T 17-10-2018 IPR012997 Rare lipoprotein A VI35_05045 ff0cd137baa0e5c48e4dcb1a89c7a659 307 Gene3D G3DSA:2.40.40.10 81 175 2.7E-27 T 17-10-2018 IPR036908 RlpA-like domain superfamily VI35_05045 ff0cd137baa0e5c48e4dcb1a89c7a659 307 SUPERFAMILY SSF110997 238 306 5.89E-8 T 17-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 VI35_05045 ff0cd137baa0e5c48e4dcb1a89c7a659 307 Pfam PF05036 Sporulation related domain 240 304 1.5E-7 T 17-10-2018 IPR007730 Sporulation-like domain GO:0042834 VI35_05045 ff0cd137baa0e5c48e4dcb1a89c7a659 307 SUPERFAMILY SSF50685 87 165 2.62E-6 T 17-10-2018 IPR036908 RlpA-like domain superfamily VI35_12355 1ead264fe84905fa42cbcdb4d746e40e 167 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 17-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site VI35_12355 1ead264fe84905fa42cbcdb4d746e40e 167 Pfam PF02082 Transcriptional regulator 1 83 5.5E-28 T 17-10-2018 IPR000944 Transcription regulator Rrf2-type VI35_12355 1ead264fe84905fa42cbcdb4d746e40e 167 SUPERFAMILY SSF46785 2 132 1.36E-36 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_12355 1ead264fe84905fa42cbcdb4d746e40e 167 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 130 7.4E-47 T 17-10-2018 IPR000944 Transcription regulator Rrf2-type VI35_12355 1ead264fe84905fa42cbcdb4d746e40e 167 TIGRFAM TIGR02010 IscR: iron-sulfur cluster assembly transcription factor IscR 1 133 1.7E-64 T 17-10-2018 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 VI35_12355 1ead264fe84905fa42cbcdb4d746e40e 167 Gene3D G3DSA:1.10.10.10 1 144 8.7E-54 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_03580 602c23809544f263cd215576a6a58ea1 180 TIGRFAM TIGR01626 ytfJ_HI0045: conserved hypothetical protein YtfJ-family, TIGR01626 4 179 8.6E-77 T 17-10-2018 IPR006513 Conserved hypothetical protein CHP01626, YtfJ VI35_03580 602c23809544f263cd215576a6a58ea1 180 Pfam PF09695 Bacterial protein of unknown function (YtfJ_HI0045) 20 178 4.5E-74 T 17-10-2018 IPR006513 Conserved hypothetical protein CHP01626, YtfJ VI35_01925 c6d2cccf4fed308e0cbabc71124c4415 130 ProSitePatterns PS00360 Ribosomal protein S9 signature. 69 87 - T 17-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 VI35_01925 c6d2cccf4fed308e0cbabc71124c4415 130 Pfam PF00380 Ribosomal protein S9/S16 10 130 2.5E-46 T 17-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 VI35_01925 c6d2cccf4fed308e0cbabc71124c4415 130 Gene3D G3DSA:3.30.230.10 1 130 8.5E-54 T 17-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VI35_01925 c6d2cccf4fed308e0cbabc71124c4415 130 SUPERFAMILY SSF54211 5 130 1.4E-48 T 17-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VI35_01925 c6d2cccf4fed308e0cbabc71124c4415 130 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 130 33.25 T 17-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid VI35_02395 7f5df9f22d0032bb40bdfc6c493ff647 865 Gene3D G3DSA:3.20.19.10 162 361 3.5E-78 T 17-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 VI35_02395 7f5df9f22d0032bb40bdfc6c493ff647 865 Gene3D G3DSA:3.40.1060.10 385 681 3.6E-150 T 17-10-2018 IPR015932 Aconitase, domain 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-1268020|Reactome: R-HSA-71403 VI35_02395 7f5df9f22d0032bb40bdfc6c493ff647 865 Pfam PF06434 Aconitate hydratase 2 N-terminus 168 382 4.4E-99 T 17-10-2018 IPR015929 Aconitase B, swivel GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 VI35_02395 7f5df9f22d0032bb40bdfc6c493ff647 865 Gene3D G3DSA:3.30.499.10 402 529 3.6E-150 T 17-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 VI35_02395 7f5df9f22d0032bb40bdfc6c493ff647 865 SUPERFAMILY SSF53732 379 859 2.62E-151 T 17-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 VI35_02395 7f5df9f22d0032bb40bdfc6c493ff647 865 Pfam PF11791 Aconitate B N-terminal domain 5 156 6.3E-65 T 17-10-2018 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 VI35_02395 7f5df9f22d0032bb40bdfc6c493ff647 865 PIRSF PIRSF036687 1 859 0.0 T 17-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 VI35_02395 7f5df9f22d0032bb40bdfc6c493ff647 865 Gene3D G3DSA:1.25.40.310 1 161 9.3E-70 T 17-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 VI35_02395 7f5df9f22d0032bb40bdfc6c493ff647 865 ProSitePatterns PS01244 Aconitase family signature 2. 761 774 - T 17-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 VI35_02395 7f5df9f22d0032bb40bdfc6c493ff647 865 Pfam PF00330 Aconitase family (aconitate hydratase) 472 818 2.6E-41 T 17-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 VI35_02395 7f5df9f22d0032bb40bdfc6c493ff647 865 SUPERFAMILY SSF74778 2 160 1.44E-66 T 17-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 VI35_02395 7f5df9f22d0032bb40bdfc6c493ff647 865 SUPERFAMILY SSF52016 163 372 3.14E-72 T 17-10-2018 VI35_02395 7f5df9f22d0032bb40bdfc6c493ff647 865 Gene3D G3DSA:3.30.499.10 683 865 2.7E-71 T 17-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 VI35_02395 7f5df9f22d0032bb40bdfc6c493ff647 865 ProSitePatterns PS00450 Aconitase family signature 1. 702 719 - T 17-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 VI35_02395 7f5df9f22d0032bb40bdfc6c493ff647 865 TIGRFAM TIGR00117 acnB: aconitate hydratase 2 1 853 0.0 T 17-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 VI35_19360 f227a63df75ff94314ed8b20657cdfb5 240 Pfam PF01914 MarC family integral membrane protein 3 204 3.9E-48 T 17-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 VI35_19360 f227a63df75ff94314ed8b20657cdfb5 240 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 3 201 5.7E-31 T 17-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 VI35_00715 f9eadb7564232c4c97a1d815951b64b7 282 Pfam PF08668 HDOD domain 19 210 1.7E-56 T 17-10-2018 IPR013976 Metal-dependent hydrolase HDOD VI35_00715 f9eadb7564232c4c97a1d815951b64b7 282 SUPERFAMILY SSF109604 10 275 1.98E-70 T 17-10-2018 VI35_00715 f9eadb7564232c4c97a1d815951b64b7 282 Gene3D G3DSA:1.10.3210.10 7 281 5.1E-71 T 17-10-2018 VI35_04015 0628ac71360db88c430930663995dbf5 142 Gene3D G3DSA:3.10.180.10 1 129 2.8E-33 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_04015 0628ac71360db88c430930663995dbf5 142 SUPERFAMILY SSF54593 12 130 1.88E-22 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_04015 0628ac71360db88c430930663995dbf5 142 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 12 124 3.4E-13 T 17-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VI35_00275 609e71f8ab7b2556333c6a20d8d26502 819 Pfam PF16967 E-set like domain 281 348 1.8E-25 T 17-10-2018 IPR032636 Pilus assembly protein, E-set like domain VI35_00275 609e71f8ab7b2556333c6a20d8d26502 819 Pfam PF15976 CS1-pili formation C-terminal 715 808 2.5E-25 T 17-10-2018 IPR031917 Pilus assembly protein, C-terminal domain VI35_05065 e54fe122b0ddcf90abbeaf8a81a961f3 155 SUPERFAMILY SSF75217 1 153 1.41E-49 T 17-10-2018 IPR029028 Alpha/beta knot methyltransferases VI35_05065 e54fe122b0ddcf90abbeaf8a81a961f3 155 Gene3D G3DSA:3.40.1280.10 1 155 2.5E-51 T 17-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VI35_05065 e54fe122b0ddcf90abbeaf8a81a961f3 155 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 154 27.392 T 17-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 VI35_05065 e54fe122b0ddcf90abbeaf8a81a961f3 155 Pfam PF02590 Predicted SPOUT methyltransferase 1 153 1.9E-46 T 17-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 VI35_05065 e54fe122b0ddcf90abbeaf8a81a961f3 155 PIRSF PIRSF004505 1 154 1.8E-40 T 17-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 VI35_05065 e54fe122b0ddcf90abbeaf8a81a961f3 155 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 2 155 1.9E-80 T 17-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 VI35_02640 0f2f126d951f8b8f49bcd0ec041dc2f6 307 Gene3D G3DSA:3.40.190.10 165 270 3.3E-47 T 17-10-2018 VI35_02640 0f2f126d951f8b8f49bcd0ec041dc2f6 307 SUPERFAMILY SSF46785 2 113 1.01E-25 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_02640 0f2f126d951f8b8f49bcd0ec041dc2f6 307 Pfam PF03466 LysR substrate binding domain 89 296 1.5E-44 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_02640 0f2f126d951f8b8f49bcd0ec041dc2f6 307 Gene3D G3DSA:3.40.190.10 93 292 3.3E-47 T 17-10-2018 VI35_02640 0f2f126d951f8b8f49bcd0ec041dc2f6 307 SUPERFAMILY SSF53850 90 298 1.63E-38 T 17-10-2018 VI35_02640 0f2f126d951f8b8f49bcd0ec041dc2f6 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.1E-21 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_02640 0f2f126d951f8b8f49bcd0ec041dc2f6 307 Gene3D G3DSA:1.10.10.10 4 89 1.3E-28 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_02640 0f2f126d951f8b8f49bcd0ec041dc2f6 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.1E-9 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_02640 0f2f126d951f8b8f49bcd0ec041dc2f6 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.1E-9 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_02640 0f2f126d951f8b8f49bcd0ec041dc2f6 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.1E-9 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_04070 534a709baa39c0b2e58ab6e91e4b9790 314 SMART SM00448 183 304 1.3E-13 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_04070 534a709baa39c0b2e58ab6e91e4b9790 314 Gene3D G3DSA:2.30.30.40 24 141 2.7E-26 T 17-10-2018 VI35_04070 534a709baa39c0b2e58ab6e91e4b9790 314 Gene3D G3DSA:3.40.50.2300 169 312 1.0E-22 T 17-10-2018 VI35_04070 534a709baa39c0b2e58ab6e91e4b9790 314 Pfam PF00072 Response regulator receiver domain 185 301 6.6E-15 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_04070 534a709baa39c0b2e58ab6e91e4b9790 314 PIRSF PIRSF002867 1 311 1.5E-101 T 17-10-2018 IPR024181 Chemotaxis response regulator CheV VI35_04070 534a709baa39c0b2e58ab6e91e4b9790 314 SUPERFAMILY SSF52172 178 309 3.7E-23 T 17-10-2018 IPR011006 CheY-like superfamily VI35_04070 534a709baa39c0b2e58ab6e91e4b9790 314 Gene3D G3DSA:2.40.50.180 41 107 2.7E-26 T 17-10-2018 VI35_04070 534a709baa39c0b2e58ab6e91e4b9790 314 Pfam PF01584 CheW-like domain 21 159 6.7E-34 T 17-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VI35_04070 534a709baa39c0b2e58ab6e91e4b9790 314 SUPERFAMILY SSF50341 16 161 1.7E-33 T 17-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 VI35_04070 534a709baa39c0b2e58ab6e91e4b9790 314 SMART SM00260 17 157 4.3E-24 T 17-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VI35_15010 3f8ac3c69cd6f62d6892549566639402 1050 PRINTS PR00702 Acriflavin resistance protein family signature 610 624 1.7E-71 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_15010 3f8ac3c69cd6f62d6892549566639402 1050 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 1.7E-71 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_15010 3f8ac3c69cd6f62d6892549566639402 1050 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 1.7E-71 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_15010 3f8ac3c69cd6f62d6892549566639402 1050 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 1.7E-71 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_15010 3f8ac3c69cd6f62d6892549566639402 1050 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.7E-71 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_15010 3f8ac3c69cd6f62d6892549566639402 1050 PRINTS PR00702 Acriflavin resistance protein family signature 541 558 1.7E-71 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_15010 3f8ac3c69cd6f62d6892549566639402 1050 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 1.7E-71 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_15010 3f8ac3c69cd6f62d6892549566639402 1050 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.7E-71 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_15010 3f8ac3c69cd6f62d6892549566639402 1050 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 1.7E-71 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_15010 3f8ac3c69cd6f62d6892549566639402 1050 Gene3D G3DSA:1.20.1640.10 10 503 0.0 T 17-10-2018 VI35_15010 3f8ac3c69cd6f62d6892549566639402 1050 SUPERFAMILY SSF82693 41 134 2.12E-26 T 17-10-2018 VI35_15010 3f8ac3c69cd6f62d6892549566639402 1050 Gene3D G3DSA:3.30.70.1430 558 655 0.0 T 17-10-2018 VI35_15010 3f8ac3c69cd6f62d6892549566639402 1050 SUPERFAMILY SSF82693 554 656 4.19E-16 T 17-10-2018 VI35_15010 3f8ac3c69cd6f62d6892549566639402 1050 SUPERFAMILY SSF82714 703 786 6.54E-18 T 17-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VI35_15010 3f8ac3c69cd6f62d6892549566639402 1050 SUPERFAMILY SSF82693 139 324 5.23E-20 T 17-10-2018 VI35_15010 3f8ac3c69cd6f62d6892549566639402 1050 Pfam PF00873 AcrB/AcrD/AcrF family 4 1007 5.8E-282 T 17-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VI35_15010 3f8ac3c69cd6f62d6892549566639402 1050 SUPERFAMILY SSF82866 789 1010 3.66E-51 T 17-10-2018 VI35_15010 3f8ac3c69cd6f62d6892549566639402 1050 Gene3D G3DSA:3.30.70.1440 656 845 0.0 T 17-10-2018 VI35_15010 3f8ac3c69cd6f62d6892549566639402 1050 Gene3D G3DSA:3.30.70.1430 40 800 0.0 T 17-10-2018 VI35_15010 3f8ac3c69cd6f62d6892549566639402 1050 SUPERFAMILY SSF82866 291 491 2.49E-47 T 17-10-2018 VI35_15010 3f8ac3c69cd6f62d6892549566639402 1050 Gene3D G3DSA:1.20.1640.10 504 1005 0.0 T 17-10-2018 VI35_15010 3f8ac3c69cd6f62d6892549566639402 1050 Gene3D G3DSA:3.30.70.1320 134 324 0.0 T 17-10-2018 VI35_15010 3f8ac3c69cd6f62d6892549566639402 1050 SUPERFAMILY SSF82714 183 265 1.57E-16 T 17-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VI35_15010 3f8ac3c69cd6f62d6892549566639402 1050 Gene3D G3DSA:3.30.2090.10 704 792 0.0 T 17-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VI35_15010 3f8ac3c69cd6f62d6892549566639402 1050 Gene3D G3DSA:3.30.2090.10 179 271 0.0 T 17-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VI35_09255 0553524ef2a1a8ede17cc7a348957bd7 283 SUPERFAMILY SSF161098 10 283 3.83E-67 T 17-10-2018 IPR035906 MetI-like superfamily VI35_09255 0553524ef2a1a8ede17cc7a348957bd7 283 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 102 276 1.9E-19 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_09255 0553524ef2a1a8ede17cc7a348957bd7 283 Gene3D G3DSA:1.10.3720.10 5 270 1.2E-61 T 17-10-2018 IPR035906 MetI-like superfamily VI35_13935 6089d5f555d0b3bed6b1414bf0ef4cd7 774 Gene3D G3DSA:1.20.140.10 318 463 3.5E-94 T 17-10-2018 VI35_13935 6089d5f555d0b3bed6b1414bf0ef4cd7 774 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 195 295 3.3E-11 T 17-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 VI35_13935 6089d5f555d0b3bed6b1414bf0ef4cd7 774 Pfam PF09317 Domain of unknown function (DUF1974) 472 756 4.4E-110 T 17-10-2018 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type GO:0003995|GO:0033539|GO:0055114 KEGG: 00071+1.3.8.8+1.3.8.7|KEGG: 00280+1.3.8.7|KEGG: 00410+1.3.8.7|KEGG: 00640+1.3.8.7|MetaCyc: PWY-7094|MetaCyc: PWY-7654 VI35_13935 6089d5f555d0b3bed6b1414bf0ef4cd7 774 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 79 190 4.9E-16 T 17-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 VI35_13935 6089d5f555d0b3bed6b1414bf0ef4cd7 774 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 318 459 2.0E-9 T 17-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 VI35_13935 6089d5f555d0b3bed6b1414bf0ef4cd7 774 Gene3D G3DSA:2.40.110.10 194 317 3.5E-94 T 17-10-2018 VI35_13935 6089d5f555d0b3bed6b1414bf0ef4cd7 774 SUPERFAMILY SSF47203 318 470 7.25E-21 T 17-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 VI35_13935 6089d5f555d0b3bed6b1414bf0ef4cd7 774 SUPERFAMILY SSF56645 77 313 1.96E-47 T 17-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 VI35_13935 6089d5f555d0b3bed6b1414bf0ef4cd7 774 Gene3D G3DSA:1.10.540.10 80 193 3.5E-94 T 17-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 VI35_08175 9f167eb9dd82c4420aa7c37a8c52fce0 478 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 316 327 - T 17-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VI35_08175 9f167eb9dd82c4420aa7c37a8c52fce0 478 Gene3D G3DSA:3.40.50.10420 146 296 3.5E-13 T 17-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily VI35_08175 9f167eb9dd82c4420aa7c37a8c52fce0 478 Pfam PF13183 4Fe-4S dicluster domain 314 380 3.6E-9 T 17-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VI35_08175 9f167eb9dd82c4420aa7c37a8c52fce0 478 Pfam PF02589 LUD domain 72 297 1.4E-52 T 17-10-2018 IPR003741 LUD domain VI35_08175 9f167eb9dd82c4420aa7c37a8c52fce0 478 Gene3D G3DSA:1.10.1060.10 297 398 2.3E-6 T 17-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VI35_08175 9f167eb9dd82c4420aa7c37a8c52fce0 478 SUPERFAMILY SSF46548 289 392 5.23E-16 T 17-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VI35_08175 9f167eb9dd82c4420aa7c37a8c52fce0 478 TIGRFAM TIGR00273 TIGR00273: iron-sulfur cluster-binding protein 21 439 1.9E-142 T 17-10-2018 IPR004452 4Fe-4S binding protein GO:0019516 VI35_08175 9f167eb9dd82c4420aa7c37a8c52fce0 478 SUPERFAMILY SSF100950 67 298 6.7E-40 T 17-10-2018 IPR037171 NagB/RpiA transferase-like VI35_08175 9f167eb9dd82c4420aa7c37a8c52fce0 478 Pfam PF11870 Domain of unknown function (DUF3390) 388 476 3.5E-28 T 17-10-2018 IPR024569 4Fe-4S binding protein, C-terminal VI35_06435 1436d2855b4baaa750756b89175bf881 394 Gene3D G3DSA:1.20.1090.10 189 394 1.8E-52 T 17-10-2018 VI35_06435 1436d2855b4baaa750756b89175bf881 394 SUPERFAMILY SSF56796 4 393 4.06E-101 T 17-10-2018 VI35_06435 1436d2855b4baaa750756b89175bf881 394 Pfam PF00465 Iron-containing alcohol dehydrogenase 10 384 1.1E-98 T 17-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 VI35_06435 1436d2855b4baaa750756b89175bf881 394 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 176 204 - T 17-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 VI35_06435 1436d2855b4baaa750756b89175bf881 394 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 263 283 - T 17-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 VI35_06435 1436d2855b4baaa750756b89175bf881 394 Gene3D G3DSA:3.40.50.1970 1 187 1.9E-50 T 17-10-2018 VI35_01600 61c012aeaa9c686bad32fe09e6ac7c1e 132 SUPERFAMILY SSF54593 1 131 1.26E-25 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_01600 61c012aeaa9c686bad32fe09e6ac7c1e 132 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 130 4.6E-11 T 17-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VI35_01600 61c012aeaa9c686bad32fe09e6ac7c1e 132 Gene3D G3DSA:3.10.180.10 1 132 1.6E-30 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_11790 1a9ef8a6c263ec9f770c2825df357650 226 Pfam PF13247 4Fe-4S dicluster domain 89 186 2.7E-24 T 17-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VI35_11790 1a9ef8a6c263ec9f770c2825df357650 226 SUPERFAMILY SSF54862 41 220 3.35E-61 T 17-10-2018 VI35_11790 1a9ef8a6c263ec9f770c2825df357650 226 Gene3D G3DSA:3.30.70.20 43 217 1.8E-57 T 17-10-2018 VI35_11790 1a9ef8a6c263ec9f770c2825df357650 226 TIGRFAM TIGR03149 cyt_nit_nrfC: cytochrome c nitrite reductase, Fe-S protein 2 222 1.5E-115 T 17-10-2018 IPR017567 Cytochrome c nitrite reductase, Fe-S protein VI35_11790 1a9ef8a6c263ec9f770c2825df357650 226 Gene3D G3DSA:3.30.70.20 103 156 1.8E-57 T 17-10-2018 VI35_11790 1a9ef8a6c263ec9f770c2825df357650 226 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 130 141 - T 17-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VI35_05415 00bd5c7a6b918a052bfd6d4853736bff 334 SUPERFAMILY SSF52374 5 330 2.06E-100 T 17-10-2018 VI35_05415 00bd5c7a6b918a052bfd6d4853736bff 334 Gene3D G3DSA:3.40.50.620 6 329 1.5E-142 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_05415 00bd5c7a6b918a052bfd6d4853736bff 334 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 66 85 2.2E-27 T 17-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 VI35_05415 00bd5c7a6b918a052bfd6d4853736bff 334 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 142 163 2.2E-27 T 17-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 VI35_05415 00bd5c7a6b918a052bfd6d4853736bff 334 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 16 32 2.2E-27 T 17-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 VI35_05415 00bd5c7a6b918a052bfd6d4853736bff 334 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 195 205 2.2E-27 T 17-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 VI35_05415 00bd5c7a6b918a052bfd6d4853736bff 334 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 12 21 - T 17-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_05415 00bd5c7a6b918a052bfd6d4853736bff 334 Pfam PF00579 tRNA synthetases class I (W and Y) 3 285 1.7E-84 T 17-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_05415 00bd5c7a6b918a052bfd6d4853736bff 334 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 3 330 1.7E-115 T 17-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 VI35_05415 00bd5c7a6b918a052bfd6d4853736bff 334 Gene3D G3DSA:1.10.240.10 186 298 1.5E-142 T 17-10-2018 VI35_05415 00bd5c7a6b918a052bfd6d4853736bff 334 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 3 331 42.541 T 17-10-2018 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 VI35_19880 6e5ee782b93b78cbea476feb13e5fd26 100 ProSitePatterns PS00050 Ribosomal protein L23 signature. 81 96 - T 17-10-2018 IPR001014 Ribosomal protein L23/L25, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19880 6e5ee782b93b78cbea476feb13e5fd26 100 Gene3D G3DSA:3.30.70.330 1 100 2.7E-38 T 17-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily VI35_19880 6e5ee782b93b78cbea476feb13e5fd26 100 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 8 98 22.883 T 17-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 VI35_19880 6e5ee782b93b78cbea476feb13e5fd26 100 Pfam PF00276 Ribosomal protein L23 9 95 1.3E-31 T 17-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 VI35_19880 6e5ee782b93b78cbea476feb13e5fd26 100 SUPERFAMILY SSF54189 3 93 1.33E-31 T 17-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_14465 1c84003f73229132e68f7229bb8a97f5 203 Gene3D G3DSA:1.10.3890.10 2 203 1.2E-74 T 17-10-2018 IPR035932 HflD-like superfamily VI35_14465 1c84003f73229132e68f7229bb8a97f5 203 Pfam PF04356 Protein of unknown function (DUF489) 7 197 4.9E-77 T 17-10-2018 IPR007451 High frequency lysogenization protein HflD VI35_14465 1c84003f73229132e68f7229bb8a97f5 203 SUPERFAMILY SSF101322 1 202 2.09E-76 T 17-10-2018 IPR035932 HflD-like superfamily VI35_14465 1c84003f73229132e68f7229bb8a97f5 203 Hamap MF_00695 High frequency lysogenization protein HflD [hflD]. 1 203 35.059 T 17-10-2018 IPR007451 High frequency lysogenization protein HflD VI35_14465 1c84003f73229132e68f7229bb8a97f5 203 ProDom PD037115 UPF0274 YCFC HI0638 METABOLISM UNCHARACTERIZED VV1342 PURINE INVOLVED SO2634 HFLD 9 196 4.0E-60 T 17-10-2018 VI35_10675 044973de9ca66e6084fff0840ea4463c 95 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 5 95 1.0E-41 T 17-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 VI35_10675 044973de9ca66e6084fff0840ea4463c 95 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 6 95 4.3E-21 T 17-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 VI35_10675 044973de9ca66e6084fff0840ea4463c 95 SUPERFAMILY SSF50715 3 95 1.71E-30 T 17-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 VI35_10675 044973de9ca66e6084fff0840ea4463c 95 Gene3D G3DSA:2.40.240.10 2 95 1.9E-32 T 17-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 VI35_10675 044973de9ca66e6084fff0840ea4463c 95 Pfam PF01386 Ribosomal L25p family 6 92 2.0E-23 T 17-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 VI35_10675 044973de9ca66e6084fff0840ea4463c 95 Hamap MF_01336 50S ribosomal protein L25 [rplY]. 3 95 26.198 T 17-10-2018 IPR020055 Ribosomal protein L25, short-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 VI35_05295 1c7f2dd5294fdb5f36eac9cc43941447 594 TIGRFAM TIGR01176 fum_red_Fp: fumarate reductase (quinol), flavoprotein subunit 4 581 0.0 T 17-10-2018 IPR005884 Fumarate reductase, flavoprotein subunit GO:0009061|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.4|KEGG: 00620+1.3.5.4|KEGG: 00650+1.3.5.4|KEGG: 00720+1.3.5.4|MetaCyc: PWY-5392|MetaCyc: PWY-5913|MetaCyc: PWY-7384 VI35_05295 1c7f2dd5294fdb5f36eac9cc43941447 594 Gene3D G3DSA:4.10.80.40 542 576 1.3E-18 T 17-10-2018 VI35_05295 1c7f2dd5294fdb5f36eac9cc43941447 594 PIRSF PIRSF000171 1 574 1.2E-43 T 17-10-2018 VI35_05295 1c7f2dd5294fdb5f36eac9cc43941447 594 SUPERFAMILY SSF51905 4 418 7.93E-74 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_05295 1c7f2dd5294fdb5f36eac9cc43941447 594 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 7 580 2.7E-236 T 17-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_05295 1c7f2dd5294fdb5f36eac9cc43941447 594 Gene3D G3DSA:1.20.58.100 423 539 1.8E-33 T 17-10-2018 VI35_05295 1c7f2dd5294fdb5f36eac9cc43941447 594 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 360 382 1.4E-8 T 17-10-2018 VI35_05295 1c7f2dd5294fdb5f36eac9cc43941447 594 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 1.4E-8 T 17-10-2018 VI35_05295 1c7f2dd5294fdb5f36eac9cc43941447 594 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 43 52 - T 17-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_05295 1c7f2dd5294fdb5f36eac9cc43941447 594 Pfam PF02910 Fumarate reductase flavoprotein C-term 453 580 5.8E-39 T 17-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_05295 1c7f2dd5294fdb5f36eac9cc43941447 594 Gene3D G3DSA:3.90.700.10 237 363 2.6E-160 T 17-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_05295 1c7f2dd5294fdb5f36eac9cc43941447 594 Gene3D G3DSA:3.50.50.60 7 409 2.6E-160 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_05295 1c7f2dd5294fdb5f36eac9cc43941447 594 SUPERFAMILY SSF46977 444 587 2.35E-47 T 17-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_05295 1c7f2dd5294fdb5f36eac9cc43941447 594 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 5.3E-5 T 17-10-2018 VI35_05295 1c7f2dd5294fdb5f36eac9cc43941447 594 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 375 382 5.3E-5 T 17-10-2018 VI35_05295 1c7f2dd5294fdb5f36eac9cc43941447 594 SUPERFAMILY SSF56425 227 358 1.39E-40 T 17-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_05295 1c7f2dd5294fdb5f36eac9cc43941447 594 Pfam PF00890 FAD binding domain 7 397 2.4E-112 T 17-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_13375 0e10a289a82ba52303b21f26c672358c 396 PRINTS PR00799 Aspartate aminotransferase signature 175 194 1.1E-38 T 17-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 VI35_13375 0e10a289a82ba52303b21f26c672358c 396 PRINTS PR00799 Aspartate aminotransferase signature 341 359 1.1E-38 T 17-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 VI35_13375 0e10a289a82ba52303b21f26c672358c 396 PRINTS PR00799 Aspartate aminotransferase signature 273 298 1.1E-38 T 17-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 VI35_13375 0e10a289a82ba52303b21f26c672358c 396 PRINTS PR00799 Aspartate aminotransferase signature 206 218 1.1E-38 T 17-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 VI35_13375 0e10a289a82ba52303b21f26c672358c 396 Gene3D G3DSA:3.90.1150.10 5 392 7.9E-157 T 17-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VI35_13375 0e10a289a82ba52303b21f26c672358c 396 Gene3D G3DSA:3.40.640.10 60 300 7.9E-157 T 17-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VI35_13375 0e10a289a82ba52303b21f26c672358c 396 SUPERFAMILY SSF53383 1 396 4.67E-114 T 17-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VI35_13375 0e10a289a82ba52303b21f26c672358c 396 Pfam PF00155 Aminotransferase class I and II 27 392 3.4E-81 T 17-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 VI35_13375 0e10a289a82ba52303b21f26c672358c 396 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 243 256 - T 17-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 VI35_13140 2f6341a7cee66e5251d36eabcebc7394 410 SUPERFAMILY SSF55021 338 409 4.85E-18 T 17-10-2018 VI35_13140 2f6341a7cee66e5251d36eabcebc7394 410 Gene3D G3DSA:3.40.50.720 110 298 1.0E-107 T 17-10-2018 VI35_13140 2f6341a7cee66e5251d36eabcebc7394 410 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 155 182 - T 17-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 VI35_13140 2f6341a7cee66e5251d36eabcebc7394 410 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 201 223 - T 17-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site VI35_13140 2f6341a7cee66e5251d36eabcebc7394 410 Gene3D G3DSA:3.30.70.260 329 409 2.6E-33 T 17-10-2018 VI35_13140 2f6341a7cee66e5251d36eabcebc7394 410 SUPERFAMILY SSF52283 8 139 1.28E-49 T 17-10-2018 VI35_13140 2f6341a7cee66e5251d36eabcebc7394 410 Gene3D G3DSA:3.40.50.720 15 313 1.0E-107 T 17-10-2018 VI35_13140 2f6341a7cee66e5251d36eabcebc7394 410 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 230 246 - T 17-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site VI35_13140 2f6341a7cee66e5251d36eabcebc7394 410 SUPERFAMILY SSF51735 109 296 4.96E-58 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_13140 2f6341a7cee66e5251d36eabcebc7394 410 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 119 295 4.5E-52 T 17-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 VI35_13140 2f6341a7cee66e5251d36eabcebc7394 410 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 14 327 3.3E-37 T 17-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 VI35_12075 010e23a4911fabe3e781be53059af164 181 Pfam PF06185 YecM protein 21 118 3.0E-22 T 17-10-2018 IPR010393 Protein of unknown function DUF991 VI35_12075 010e23a4911fabe3e781be53059af164 181 Gene3D G3DSA:3.10.180.10 4 166 3.9E-32 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_12075 010e23a4911fabe3e781be53059af164 181 SUPERFAMILY SSF54593 21 164 2.09E-27 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_08590 552c4322c54ca8b29a148fa4722d4882 370 TIGRFAM TIGR00075 hypD: hydrogenase expression/formation protein HypD 9 367 4.0E-151 T 17-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 VI35_08590 552c4322c54ca8b29a148fa4722d4882 370 Pfam PF01924 Hydrogenase formation hypA family 16 366 7.0E-151 T 17-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 VI35_08590 552c4322c54ca8b29a148fa4722d4882 370 Gene3D G3DSA:1.10.10.2140 318 369 9.2E-24 T 17-10-2018 VI35_08590 552c4322c54ca8b29a148fa4722d4882 370 PIRSF PIRSF005622 5 370 6.8E-157 T 17-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 VI35_08590 552c4322c54ca8b29a148fa4722d4882 370 Gene3D G3DSA:3.40.50.11750 21 263 1.2E-105 T 17-10-2018 VI35_08590 552c4322c54ca8b29a148fa4722d4882 370 Gene3D G3DSA:3.40.50.11740 66 304 1.2E-105 T 17-10-2018 VI35_08990 0c5168bc8ef53e756b6e3ed7f0a343a0 616 Gene3D G3DSA:3.40.50.300 3 187 1.3E-10 T 17-10-2018 VI35_08990 0c5168bc8ef53e756b6e3ed7f0a343a0 616 Pfam PF05876 Phage terminase large subunit (GpA) 7 567 3.1E-148 T 17-10-2018 IPR008866 Bacteriophage lambda, GpA VI35_05895 0dcfcd0b026e6c89d7ffc19997c646a6 443 SUPERFAMILY SSF52540 93 364 3.04E-95 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_05895 0dcfcd0b026e6c89d7ffc19997c646a6 443 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 147 358 1.5E-73 T 17-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VI35_05895 0dcfcd0b026e6c89d7ffc19997c646a6 443 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 349 358 - T 17-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VI35_05895 0dcfcd0b026e6c89d7ffc19997c646a6 443 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 20 436 4.6E-179 T 17-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VI35_05895 0dcfcd0b026e6c89d7ffc19997c646a6 443 TIGRFAM TIGR03496 FliI_clade1: flagellar protein export ATPase FliI 25 435 1.3E-199 T 17-10-2018 IPR020005 Flagellar export ATPase FliI, clade 1 GO:0016887|GO:0044780|GO:0071973 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VI35_05895 0dcfcd0b026e6c89d7ffc19997c646a6 443 Gene3D G3DSA:3.40.50.12240 19 440 4.0E-155 T 17-10-2018 VI35_05895 0dcfcd0b026e6c89d7ffc19997c646a6 443 SMART SM00382 159 342 3.4E-8 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_12410 29525ca430e37be252a5a6fc89ffea09 355 Pfam PF02547 Queuosine biosynthesis protein 3 348 5.9E-134 T 17-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 VI35_12410 29525ca430e37be252a5a6fc89ffea09 355 SUPERFAMILY SSF111337 1 348 1.03E-138 T 17-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 VI35_12410 29525ca430e37be252a5a6fc89ffea09 355 Gene3D G3DSA:3.40.1780.10 14 348 9.5E-116 T 17-10-2018 VI35_12410 29525ca430e37be252a5a6fc89ffea09 355 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 349 47.392 T 17-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 VI35_12410 29525ca430e37be252a5a6fc89ffea09 355 Gene3D G3DSA:2.40.10.240 64 166 9.5E-116 T 17-10-2018 VI35_12410 29525ca430e37be252a5a6fc89ffea09 355 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1 348 2.4E-156 T 17-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 VI35_14940 3a6c3fd3bf0de574d6ba1c418066070a 194 Pfam PF07273 Protein of unknown function (DUF1439) 34 186 1.4E-44 T 17-10-2018 IPR010835 Protein of unknown function DUF1439 VI35_14940 3a6c3fd3bf0de574d6ba1c418066070a 194 Gene3D G3DSA:3.15.10.40 28 193 1.7E-50 T 17-10-2018 VI35_10190 92e0d793639298f35cca183ea2d70fca 800 SUPERFAMILY SSF53098 15 407 2.7E-81 T 17-10-2018 IPR012337 Ribonuclease H-like superfamily VI35_10190 92e0d793639298f35cca183ea2d70fca 800 Gene3D G3DSA:3.90.1600.10 476 649 9.8E-52 T 17-10-2018 IPR023211 DNA polymerase, palm domain superfamily KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_10190 92e0d793639298f35cca183ea2d70fca 800 Gene3D G3DSA:3.90.1600.10 366 462 1.5E-30 T 17-10-2018 IPR023211 DNA polymerase, palm domain superfamily KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_10190 92e0d793639298f35cca183ea2d70fca 800 Gene3D G3DSA:2.40.50.590 16 145 3.8E-34 T 17-10-2018 VI35_10190 92e0d793639298f35cca183ea2d70fca 800 Gene3D G3DSA:1.10.132.60 656 800 1.9E-59 T 17-10-2018 VI35_10190 92e0d793639298f35cca183ea2d70fca 800 SMART SM00486 166 571 5.7E-69 T 17-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_10190 92e0d793639298f35cca183ea2d70fca 800 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 505 517 1.7E-10 T 17-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_10190 92e0d793639298f35cca183ea2d70fca 800 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 433 446 1.7E-10 T 17-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_10190 92e0d793639298f35cca183ea2d70fca 800 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 557 565 1.7E-10 T 17-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_10190 92e0d793639298f35cca183ea2d70fca 800 Pfam PF03104 DNA polymerase family B, exonuclease domain 195 314 1.5E-11 T 17-10-2018 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_10190 92e0d793639298f35cca183ea2d70fca 800 SUPERFAMILY SSF56672 403 794 1.5E-116 T 17-10-2018 VI35_10190 92e0d793639298f35cca183ea2d70fca 800 Gene3D G3DSA:3.30.420.10 169 364 1.3E-66 T 17-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VI35_10190 92e0d793639298f35cca183ea2d70fca 800 Pfam PF00136 DNA polymerase family B 396 752 1.6E-39 T 17-10-2018 IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain GO:0000166|GO:0003677 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_10190 92e0d793639298f35cca183ea2d70fca 800 ProSitePatterns PS00116 DNA polymerase family B signature. 559 567 - T 17-10-2018 IPR017964 DNA-directed DNA polymerase, family B, conserved site GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_10190 92e0d793639298f35cca183ea2d70fca 800 Gene3D G3DSA:3.30.70.2250 51 118 3.8E-34 T 17-10-2018 VI35_12695 cbbf3e6566e0236935eea1450f42174c 382 Pfam PF04209 homogentisate 1,2-dioxygenase 106 375 7.7E-18 T 17-10-2018 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|Reactome: R-HSA-71182 VI35_12695 cbbf3e6566e0236935eea1450f42174c 382 SUPERFAMILY SSF51182 83 376 3.87E-87 T 17-10-2018 IPR011051 RmlC-like cupin domain superfamily VI35_12695 cbbf3e6566e0236935eea1450f42174c 382 Gene3D G3DSA:2.60.120.10 66 167 3.6E-12 T 17-10-2018 IPR014710 RmlC-like jelly roll fold VI35_10725 e4d29fa7096175183666e33c0b703e0d 90 ProSitePatterns PS00150 Acylphosphatase signature 1. 10 20 - T 17-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 VI35_10725 e4d29fa7096175183666e33c0b703e0d 90 Gene3D G3DSA:3.30.70.100 4 89 9.0E-26 T 17-10-2018 VI35_10725 e4d29fa7096175183666e33c0b703e0d 90 Pfam PF00708 Acylphosphatase 8 87 6.6E-24 T 17-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 VI35_10725 e4d29fa7096175183666e33c0b703e0d 90 SUPERFAMILY SSF54975 6 88 2.4E-25 T 17-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 VI35_01445 58bbf773b7a2c701ef6792de72bcb5d5 299 SUPERFAMILY SSF56317 1 285 3.01E-84 T 17-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily VI35_01445 58bbf773b7a2c701ef6792de72bcb5d5 299 Gene3D G3DSA:3.60.110.10 1 294 2.2E-106 T 17-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily VI35_01445 58bbf773b7a2c701ef6792de72bcb5d5 299 TIGRFAM TIGR03381 agmatine_aguB: N-carbamoylputrescine amidase 4 284 9.8E-136 T 17-10-2018 IPR017755 N-carbamoylputrescine amidase GO:0006596|GO:0050126 KEGG: 00330+3.5.1.53|MetaCyc: PWY-43 VI35_01445 58bbf773b7a2c701ef6792de72bcb5d5 299 Pfam PF00795 Carbon-nitrogen hydrolase 6 266 3.0E-55 T 17-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 VI35_14155 b7f6d326b041fafaeb22e714b3ea4a89 302 SUPERFAMILY SSF46785 3 110 3.95E-23 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_14155 b7f6d326b041fafaeb22e714b3ea4a89 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 2 60 2.5E-20 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_14155 b7f6d326b041fafaeb22e714b3ea4a89 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 17 28 4.4E-5 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_14155 b7f6d326b041fafaeb22e714b3ea4a89 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 38 4.4E-5 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_14155 b7f6d326b041fafaeb22e714b3ea4a89 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 38 49 4.4E-5 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_14155 b7f6d326b041fafaeb22e714b3ea4a89 302 SUPERFAMILY SSF53850 88 298 3.26E-45 T 17-10-2018 VI35_14155 b7f6d326b041fafaeb22e714b3ea4a89 302 Gene3D G3DSA:3.40.190.10 90 293 5.0E-66 T 17-10-2018 VI35_14155 b7f6d326b041fafaeb22e714b3ea4a89 302 Gene3D G3DSA:1.10.10.10 1 85 1.1E-24 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_14155 b7f6d326b041fafaeb22e714b3ea4a89 302 Gene3D G3DSA:3.40.190.10 161 266 5.0E-66 T 17-10-2018 VI35_14155 b7f6d326b041fafaeb22e714b3ea4a89 302 Pfam PF03466 LysR substrate binding domain 88 294 2.5E-45 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_15485 f733440153aef34c4e3d607dc024aa57 263 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 65 99 7.1E-4 T 17-10-2018 IPR001451 Hexapeptide repeat VI35_15485 f733440153aef34c4e3d607dc024aa57 263 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 4 33 4.3E-4 T 17-10-2018 IPR001451 Hexapeptide repeat VI35_15485 f733440153aef34c4e3d607dc024aa57 263 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 109 143 3.6E-8 T 17-10-2018 IPR001451 Hexapeptide repeat VI35_15485 f733440153aef34c4e3d607dc024aa57 263 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 36 62 5.7E-5 T 17-10-2018 IPR001451 Hexapeptide repeat VI35_15485 f733440153aef34c4e3d607dc024aa57 263 PIRSF PIRSF000456 4 263 4.9E-105 T 17-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 VI35_15485 f733440153aef34c4e3d607dc024aa57 263 Gene3D G3DSA:2.160.10.10 1 195 4.6E-57 T 17-10-2018 VI35_15485 f733440153aef34c4e3d607dc024aa57 263 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 8 260 1.1E-101 T 17-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 VI35_15485 f733440153aef34c4e3d607dc024aa57 263 SUPERFAMILY SSF51161 2 262 1.13E-81 T 17-10-2018 IPR011004 Trimeric LpxA-like superfamily VI35_15485 f733440153aef34c4e3d607dc024aa57 263 Gene3D G3DSA:1.20.1180.10 197 262 1.3E-23 T 17-10-2018 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily KEGG: 00540+2.3.1.129 VI35_15485 f733440153aef34c4e3d607dc024aa57 263 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 180 261 1.3E-27 T 17-10-2018 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00540+2.3.1.129 VI35_15485 f733440153aef34c4e3d607dc024aa57 263 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 5 262 45.167 T 17-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 VI35_12290 2303f6ef4497ab96385b10e05b169a84 376 Gene3D G3DSA:3.30.413.10 268 365 1.2E-24 T 17-10-2018 VI35_12290 2303f6ef4497ab96385b10e05b169a84 376 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 15 355 1.7E-128 T 17-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 VI35_12290 2303f6ef4497ab96385b10e05b169a84 376 Pfam PF04551 GcpE protein 19 359 2.6E-133 T 17-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 VI35_12290 2303f6ef4497ab96385b10e05b169a84 376 SUPERFAMILY SSF51604 28 145 2.3E-10 T 17-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily VI35_12290 2303f6ef4497ab96385b10e05b169a84 376 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 13 363 34.837 T 17-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 VI35_12290 2303f6ef4497ab96385b10e05b169a84 376 SUPERFAMILY SSF56014 271 359 9.45E-13 T 17-10-2018 VI35_12290 2303f6ef4497ab96385b10e05b169a84 376 PIRSF PIRSF004640 8 368 1.3E-146 T 17-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 VI35_12290 2303f6ef4497ab96385b10e05b169a84 376 Gene3D G3DSA:3.20.20.20 3 267 3.2E-105 T 17-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VI35_03185 f0445b17897dc90f668936d78219b97a 355 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 22 31 - T 17-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 VI35_03185 f0445b17897dc90f668936d78219b97a 355 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 142 158 - T 17-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 VI35_03185 f0445b17897dc90f668936d78219b97a 355 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 5 347 3.1E-144 T 17-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 VI35_03185 f0445b17897dc90f668936d78219b97a 355 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 9 347 9.5E-138 T 17-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 VI35_03185 f0445b17897dc90f668936d78219b97a 355 Gene3D G3DSA:3.20.20.210 1 354 1.2E-164 T 17-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 VI35_03185 f0445b17897dc90f668936d78219b97a 355 SUPERFAMILY SSF51726 3 353 3.84E-125 T 17-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 VI35_03185 f0445b17897dc90f668936d78219b97a 355 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 6 349 50.539 T 17-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 VI35_07095 d198f56d8384456e85e709fe5b4905e1 96 SUPERFAMILY SSF54909 1 93 6.31E-30 T 17-10-2018 IPR011008 Dimeric alpha-beta barrel VI35_07095 d198f56d8384456e85e709fe5b4905e1 96 Gene3D G3DSA:3.30.70.100 1 95 1.0E-27 T 17-10-2018 VI35_07095 d198f56d8384456e85e709fe5b4905e1 96 Pfam PF03992 Antibiotic biosynthesis monooxygenase 4 78 3.5E-23 T 17-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain VI35_12935 279a1db19659853b86587912280a8768 394 Pfam PF00656 Caspase domain 21 256 4.4E-5 T 17-10-2018 VI35_17405 cbb112c8361d5ee3a726fdb3f7b7932b 226 SUPERFAMILY SSF51735 3 213 5.14E-46 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_17405 cbb112c8361d5ee3a726fdb3f7b7932b 226 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 17-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 VI35_17405 cbb112c8361d5ee3a726fdb3f7b7932b 226 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 2 182 0.0065 T 17-10-2018 VI35_17405 cbb112c8361d5ee3a726fdb3f7b7932b 226 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 1.3E-11 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_17405 cbb112c8361d5ee3a726fdb3f7b7932b 226 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 1.3E-11 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_17405 cbb112c8361d5ee3a726fdb3f7b7932b 226 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 1.3E-11 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_17405 cbb112c8361d5ee3a726fdb3f7b7932b 226 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 1.3E-11 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_17405 cbb112c8361d5ee3a726fdb3f7b7932b 226 Pfam PF00106 short chain dehydrogenase 3 187 1.7E-34 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_17405 cbb112c8361d5ee3a726fdb3f7b7932b 226 Gene3D G3DSA:3.40.50.720 2 226 6.2E-57 T 17-10-2018 VI35_17405 cbb112c8361d5ee3a726fdb3f7b7932b 226 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 134 5.6E-5 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_17405 cbb112c8361d5ee3a726fdb3f7b7932b 226 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 5.6E-5 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_17405 cbb112c8361d5ee3a726fdb3f7b7932b 226 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 5.6E-5 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_02470 f77487e23dfd479098c752a6f4888859 447 Pfam PF07885 Ion channel 370 442 1.5E-10 T 17-10-2018 IPR013099 Potassium channel domain VI35_02470 f77487e23dfd479098c752a6f4888859 447 Gene3D G3DSA:1.10.287.70 361 447 1.0E-12 T 17-10-2018 VI35_02470 f77487e23dfd479098c752a6f4888859 447 SUPERFAMILY SSF81324 324 442 5.89E-12 T 17-10-2018 VI35_08730 907622ad139337143e2a44f3740b8d37 338 Gene3D G3DSA:1.10.3470.10 3 331 5.3E-76 T 17-10-2018 IPR037294 ABC transporter, BtuC-like VI35_08730 907622ad139337143e2a44f3740b8d37 338 Pfam PF01032 FecCD transport family 15 327 7.0E-80 T 17-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 VI35_08730 907622ad139337143e2a44f3740b8d37 338 SUPERFAMILY SSF81345 3 326 1.44E-64 T 17-10-2018 IPR037294 ABC transporter, BtuC-like VI35_03335 2c636db3d7b4c78da3f3b58de6537064 736 Gene3D G3DSA:3.10.20.30 396 469 2.6E-31 T 17-10-2018 IPR012675 Beta-grasp domain superfamily VI35_03335 2c636db3d7b4c78da3f3b58de6537064 736 Gene3D G3DSA:1.10.3210.10 20 203 2.9E-40 T 17-10-2018 VI35_03335 2c636db3d7b4c78da3f3b58de6537064 736 Gene3D G3DSA:3.30.460.10 205 337 7.1E-50 T 17-10-2018 VI35_03335 2c636db3d7b4c78da3f3b58de6537064 736 SUPERFAMILY SSF55021 663 735 7.4E-12 T 17-10-2018 VI35_03335 2c636db3d7b4c78da3f3b58de6537064 736 SUPERFAMILY SSF81271 396 461 9.37E-20 T 17-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 VI35_03335 2c636db3d7b4c78da3f3b58de6537064 736 Pfam PF04607 Region found in RelA / SpoT proteins 247 356 7.7E-38 T 17-10-2018 IPR007685 RelA/SpoT GO:0015969 VI35_03335 2c636db3d7b4c78da3f3b58de6537064 736 SUPERFAMILY SSF109604 25 203 7.85E-44 T 17-10-2018 VI35_03335 2c636db3d7b4c78da3f3b58de6537064 736 Pfam PF02824 TGS domain 402 461 1.4E-18 T 17-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 VI35_03335 2c636db3d7b4c78da3f3b58de6537064 736 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 58 735 6.5E-188 T 17-10-2018 IPR004811 RelA/SpoT family GO:0015969 VI35_03335 2c636db3d7b4c78da3f3b58de6537064 736 Pfam PF13291 ACT domain 659 735 4.0E-17 T 17-10-2018 IPR002912 ACT domain VI35_03335 2c636db3d7b4c78da3f3b58de6537064 736 SMART SM00954 247 357 1.2E-65 T 17-10-2018 IPR007685 RelA/SpoT GO:0015969 VI35_03335 2c636db3d7b4c78da3f3b58de6537064 736 Pfam PF13328 HD domain 50 187 1.0E-38 T 17-10-2018 IPR003607 HD/PDEase domain VI35_03335 2c636db3d7b4c78da3f3b58de6537064 736 Gene3D G3DSA:3.30.70.260 659 736 1.2E-16 T 17-10-2018 VI35_03335 2c636db3d7b4c78da3f3b58de6537064 736 SUPERFAMILY SSF81301 192 406 1.96E-64 T 17-10-2018 VI35_13280 9db488480fb8a349003c139c34b872d0 211 SUPERFAMILY SSF48498 97 209 5.94E-29 T 17-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VI35_13280 9db488480fb8a349003c139c34b872d0 211 Pfam PF16925 Bacterial transcriptional repressor C-terminal 97 209 1.6E-41 T 17-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal VI35_13280 9db488480fb8a349003c139c34b872d0 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 50 73 3.4E-5 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_13280 9db488480fb8a349003c139c34b872d0 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 29 42 3.4E-5 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_13280 9db488480fb8a349003c139c34b872d0 211 SUPERFAMILY SSF46689 20 92 2.77E-15 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_13280 9db488480fb8a349003c139c34b872d0 211 Gene3D G3DSA:1.10.357.10 25 210 3.1E-61 T 17-10-2018 VI35_13280 9db488480fb8a349003c139c34b872d0 211 Pfam PF00440 Bacterial regulatory proteins, tetR family 30 74 2.9E-10 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_13955 ff449c4ebe2478c32d1319510c723599 331 SUPERFAMILY SSF53850 21 328 7.09E-79 T 17-10-2018 VI35_13955 ff449c4ebe2478c32d1319510c723599 331 Gene3D G3DSA:3.40.190.10 28 296 7.9E-117 T 17-10-2018 VI35_13955 ff449c4ebe2478c32d1319510c723599 331 Pfam PF13531 Bacterial extracellular solute-binding protein 32 280 1.0E-37 T 17-10-2018 VI35_13955 ff449c4ebe2478c32d1319510c723599 331 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 18 327 1.5E-121 T 17-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 VI35_13955 ff449c4ebe2478c32d1319510c723599 331 Gene3D G3DSA:3.40.190.10 116 326 7.9E-117 T 17-10-2018 VI35_00185 832a98d698139115a38d35e747e9947d 237 Hamap MF_00521 3-deoxy-D-manno-octulosonic acid kinase [kdkA]. 1 234 35.823 T 17-10-2018 IPR022826 3-deoxy-D-manno-octulosonic acid kinase GO:0016773 KEGG: 00540+2.7.1.166|MetaCyc: PWY-7675|MetaCyc: PWY-7676 VI35_00185 832a98d698139115a38d35e747e9947d 237 Gene3D G3DSA:1.10.510.10 142 237 9.6E-16 T 17-10-2018 VI35_00185 832a98d698139115a38d35e747e9947d 237 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 30 232 1.7E-65 T 17-10-2018 VI35_00185 832a98d698139115a38d35e747e9947d 237 SUPERFAMILY SSF56112 44 196 4.86E-19 T 17-10-2018 IPR011009 Protein kinase-like domain superfamily VI35_12815 340d5a336c4aef84d16628bcdba5439a 273 Gene3D G3DSA:3.40.190.10 112 220 1.0E-80 T 17-10-2018 VI35_12815 340d5a336c4aef84d16628bcdba5439a 273 Pfam PF03180 NLPA lipoprotein 33 266 1.8E-73 T 17-10-2018 IPR004872 Lipoprotein NlpA family VI35_12815 340d5a336c4aef84d16628bcdba5439a 273 SUPERFAMILY SSF53850 32 266 5.43E-65 T 17-10-2018 VI35_12815 340d5a336c4aef84d16628bcdba5439a 273 Gene3D G3DSA:3.40.190.10 47 262 1.0E-80 T 17-10-2018 VI35_11885 b0037335262370ed1e0157ca2e6b02cc 210 Gene3D G3DSA:3.20.20.450 20 196 3.4E-59 T 17-10-2018 IPR035919 EAL domain superfamily VI35_11885 b0037335262370ed1e0157ca2e6b02cc 210 Pfam PF00563 EAL domain 27 181 8.6E-46 T 17-10-2018 IPR001633 EAL domain VI35_11885 b0037335262370ed1e0157ca2e6b02cc 210 SMART SM00052 1 186 1.6E-36 T 17-10-2018 IPR001633 EAL domain VI35_11885 b0037335262370ed1e0157ca2e6b02cc 210 SUPERFAMILY SSF141868 27 195 8.76E-56 T 17-10-2018 IPR035919 EAL domain superfamily VI35_12765 ca78c93a648509fdc23ce0f2a8635dda 713 Pfam PF12805 FUSC-like inner membrane protein yccS 69 351 7.7E-97 T 17-10-2018 IPR032692 Integral membrane protein YccS, N-terminal VI35_12765 ca78c93a648509fdc23ce0f2a8635dda 713 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 16 698 6.3E-189 T 17-10-2018 IPR010020 Integral membrane protein, YccS/YhfK VI35_12765 ca78c93a648509fdc23ce0f2a8635dda 713 TIGRFAM TIGR01666 YCCS: TIGR01666 family membrane protein 15 650 4.7E-192 T 17-10-2018 IPR010019 Integral membrane protein, YccS VI35_12765 ca78c93a648509fdc23ce0f2a8635dda 713 Pfam PF13515 Fusaric acid resistance protein-like 408 527 1.4E-21 T 17-10-2018 VI35_03845 1dca0f4946c66461a13c7ba86b61b652 183 Pfam PF04279 Intracellular septation protein A 1 175 1.5E-68 T 17-10-2018 IPR006008 Intracellular septation protein A GO:0016021 VI35_03845 1dca0f4946c66461a13c7ba86b61b652 183 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 1 176 18.805 T 17-10-2018 IPR006008 Intracellular septation protein A GO:0016021 VI35_03845 1dca0f4946c66461a13c7ba86b61b652 183 TIGRFAM TIGR00997 ispZ: intracellular septation protein A 1 177 2.3E-65 T 17-10-2018 IPR006008 Intracellular septation protein A GO:0016021 VI35_05670 5301eb1cd6f556b577f344c17906c355 243 Pfam PF04452 RNA methyltransferase 20 236 2.9E-70 T 17-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 VI35_05670 5301eb1cd6f556b577f344c17906c355 243 Gene3D G3DSA:3.40.1280.10 74 243 8.9E-62 T 17-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VI35_05670 5301eb1cd6f556b577f344c17906c355 243 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 3 242 1.5E-80 T 17-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 VI35_05670 5301eb1cd6f556b577f344c17906c355 243 SUPERFAMILY SSF75217 75 242 8.37E-50 T 17-10-2018 IPR029028 Alpha/beta knot methyltransferases VI35_05670 5301eb1cd6f556b577f344c17906c355 243 SUPERFAMILY SSF88697 2 70 3.73E-18 T 17-10-2018 IPR015947 PUA-like superfamily VI35_05670 5301eb1cd6f556b577f344c17906c355 243 Gene3D G3DSA:2.40.240.20 1 69 1.0E-23 T 17-10-2018 VI35_05670 5301eb1cd6f556b577f344c17906c355 243 PIRSF PIRSF015601 3 242 7.5E-53 T 17-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 VI35_08660 fb7c9403b3664d9511a08ed319afc638 424 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 15 421 51.238 T 17-10-2018 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 VI35_08660 fb7c9403b3664d9511a08ed319afc638 424 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 24 43 - T 17-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 VI35_08660 fb7c9403b3664d9511a08ed319afc638 424 Gene3D G3DSA:2.160.10.10 299 424 9.4E-37 T 17-10-2018 VI35_08660 fb7c9403b3664d9511a08ed319afc638 424 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 111 119 - T 17-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 VI35_08660 fb7c9403b3664d9511a08ed319afc638 424 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 209 219 - T 17-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 VI35_08660 fb7c9403b3664d9511a08ed319afc638 424 Pfam PF00483 Nucleotidyl transferase 20 289 3.1E-68 T 17-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 VI35_08660 fb7c9403b3664d9511a08ed319afc638 424 Gene3D G3DSA:3.90.550.10 9 298 1.5E-89 T 17-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VI35_08660 fb7c9403b3664d9511a08ed319afc638 424 SUPERFAMILY SSF51161 310 409 1.37E-16 T 17-10-2018 IPR011004 Trimeric LpxA-like superfamily VI35_08660 fb7c9403b3664d9511a08ed319afc638 424 SUPERFAMILY SSF53448 19 375 1.94E-76 T 17-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VI35_08660 fb7c9403b3664d9511a08ed319afc638 424 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 19 395 2.8E-153 T 17-10-2018 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 VI35_01750 8d5163a15726944d121e6b42e6e5b175 105 Pfam PF04363 Protein of unknown function (DUF496) 9 100 1.3E-44 T 17-10-2018 IPR007458 Protein of unknown function DUF496 VI35_01750 8d5163a15726944d121e6b42e6e5b175 105 PIRSF PIRSF028773 1 105 4.7E-48 T 17-10-2018 IPR007458 Protein of unknown function DUF496 VI35_01750 8d5163a15726944d121e6b42e6e5b175 105 Hamap MF_00683 UPF0265 protein YeeX [yeeX]. 9 103 24.663 T 17-10-2018 IPR007458 Protein of unknown function DUF496 VI35_01750 8d5163a15726944d121e6b42e6e5b175 105 ProDom PD030876 UPF0265 YEEX HELIX ALPHA BFL460 UNCHARACTERIZED FN0411 HI1168 VPA1226 BCR 12 91 2.0E-33 T 17-10-2018 IPR007458 Protein of unknown function DUF496 VI35_10735 31ce932d645fe5626dddc2eea9b80b24 677 Hamap MF_00098 Methionine--tRNA ligase [metG]. 6 546 41.076 T 17-10-2018 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 VI35_10735 31ce932d645fe5626dddc2eea9b80b24 677 Gene3D G3DSA:3.40.50.620 8 385 2.4E-157 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_10735 31ce932d645fe5626dddc2eea9b80b24 677 Pfam PF01588 Putative tRNA binding domain 582 674 3.1E-24 T 17-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 VI35_10735 31ce932d645fe5626dddc2eea9b80b24 677 SUPERFAMILY SSF47323 390 548 1.64E-45 T 17-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_10735 31ce932d645fe5626dddc2eea9b80b24 677 SUPERFAMILY SSF50249 571 676 1.35E-32 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_10735 31ce932d645fe5626dddc2eea9b80b24 677 SUPERFAMILY SSF52374 5 388 2.08E-101 T 17-10-2018 VI35_10735 31ce932d645fe5626dddc2eea9b80b24 677 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 8 536 1.8E-197 T 17-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 VI35_10735 31ce932d645fe5626dddc2eea9b80b24 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 252 263 1.5E-25 T 17-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 VI35_10735 31ce932d645fe5626dddc2eea9b80b24 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 10 23 1.5E-25 T 17-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 VI35_10735 31ce932d645fe5626dddc2eea9b80b24 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 42 56 1.5E-25 T 17-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 VI35_10735 31ce932d645fe5626dddc2eea9b80b24 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 90 101 1.5E-25 T 17-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 VI35_10735 31ce932d645fe5626dddc2eea9b80b24 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 385 396 1.5E-25 T 17-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 VI35_10735 31ce932d645fe5626dddc2eea9b80b24 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 292 307 1.5E-25 T 17-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 VI35_10735 31ce932d645fe5626dddc2eea9b80b24 677 Gene3D G3DSA:2.20.28.20 142 176 2.4E-157 T 17-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 VI35_10735 31ce932d645fe5626dddc2eea9b80b24 677 Pfam PF09334 tRNA synthetases class I (M) 8 397 1.5E-162 T 17-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_10735 31ce932d645fe5626dddc2eea9b80b24 677 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 15 26 - T 17-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_10735 31ce932d645fe5626dddc2eea9b80b24 677 SUPERFAMILY SSF57770 142 176 1.1E-12 T 17-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 VI35_10735 31ce932d645fe5626dddc2eea9b80b24 677 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 542 677 1.5E-46 T 17-10-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 VI35_10735 31ce932d645fe5626dddc2eea9b80b24 677 Gene3D G3DSA:2.40.50.140 566 677 2.9E-35 T 17-10-2018 VI35_10735 31ce932d645fe5626dddc2eea9b80b24 677 Gene3D G3DSA:1.10.730.10 390 527 3.3E-35 T 17-10-2018 VI35_10735 31ce932d645fe5626dddc2eea9b80b24 677 Pfam PF08264 Anticodon-binding domain of tRNA 418 503 1.9E-6 T 17-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 VI35_01360 580236b8d1f8e7571254b212d1153570 701 Gene3D G3DSA:3.30.70.240 611 681 3.4E-87 T 17-10-2018 VI35_01360 580236b8d1f8e7571254b212d1153570 701 SUPERFAMILY SSF54980 410 487 3.49E-25 T 17-10-2018 IPR035647 EF-G domain III/V-like VI35_01360 580236b8d1f8e7571254b212d1153570 701 SUPERFAMILY SSF54980 610 697 4.65E-29 T 17-10-2018 IPR035647 EF-G domain III/V-like VI35_01360 580236b8d1f8e7571254b212d1153570 701 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 699 0.0 T 17-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 VI35_01360 580236b8d1f8e7571254b212d1153570 701 Gene3D G3DSA:3.30.230.10 490 694 3.4E-87 T 17-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VI35_01360 580236b8d1f8e7571254b212d1153570 701 Pfam PF00009 Elongation factor Tu GTP binding domain 9 287 2.9E-66 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_01360 580236b8d1f8e7571254b212d1153570 701 SMART SM00838 607 694 1.1E-56 T 17-10-2018 IPR000640 Elongation factor EFG, domain V-like VI35_01360 580236b8d1f8e7571254b212d1153570 701 Pfam PF03144 Elongation factor Tu domain 2 330 397 2.1E-16 T 17-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 VI35_01360 580236b8d1f8e7571254b212d1153570 701 Gene3D G3DSA:3.30.70.870 411 489 1.5E-32 T 17-10-2018 VI35_01360 580236b8d1f8e7571254b212d1153570 701 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 17-10-2018 IPR031157 Tr-type G domain, conserved site VI35_01360 580236b8d1f8e7571254b212d1153570 701 Gene3D G3DSA:2.40.30.10 304 410 1.2E-44 T 17-10-2018 VI35_01360 580236b8d1f8e7571254b212d1153570 701 SMART SM00889 486 605 8.2E-72 T 17-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 VI35_01360 580236b8d1f8e7571254b212d1153570 701 SUPERFAMILY SSF52540 6 287 2.39E-106 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_01360 580236b8d1f8e7571254b212d1153570 701 PRINTS PR00315 GTP-binding elongation factor signature 85 95 1.7E-16 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_01360 580236b8d1f8e7571254b212d1153570 701 PRINTS PR00315 GTP-binding elongation factor signature 137 146 1.7E-16 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_01360 580236b8d1f8e7571254b212d1153570 701 PRINTS PR00315 GTP-binding elongation factor signature 12 25 1.7E-16 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_01360 580236b8d1f8e7571254b212d1153570 701 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.7E-16 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_01360 580236b8d1f8e7571254b212d1153570 701 PRINTS PR00315 GTP-binding elongation factor signature 101 112 1.7E-16 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_01360 580236b8d1f8e7571254b212d1153570 701 Gene3D G3DSA:3.40.50.300 1 303 2.1E-115 T 17-10-2018 VI35_01360 580236b8d1f8e7571254b212d1153570 701 Pfam PF14492 Elongation Factor G, domain II 410 484 9.9E-34 T 17-10-2018 VI35_01360 580236b8d1f8e7571254b212d1153570 701 Pfam PF03764 Elongation factor G, domain IV 485 605 3.3E-47 T 17-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 VI35_01360 580236b8d1f8e7571254b212d1153570 701 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 187 1.2E-32 T 17-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VI35_01360 580236b8d1f8e7571254b212d1153570 701 Hamap MF_00054_B Elongation factor G [fusA]. 6 698 113.316 T 17-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 VI35_01360 580236b8d1f8e7571254b212d1153570 701 Pfam PF00679 Elongation factor G C-terminus 607 692 5.0E-30 T 17-10-2018 IPR000640 Elongation factor EFG, domain V-like VI35_01360 580236b8d1f8e7571254b212d1153570 701 SUPERFAMILY SSF50447 271 410 3.76E-35 T 17-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VI35_01360 580236b8d1f8e7571254b212d1153570 701 SUPERFAMILY SSF54211 485 606 1.34E-41 T 17-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VI35_10925 8518c61c3ce346fd6dab06160a000938 336 Pfam PF01180 Dihydroorotate dehydrogenase 47 335 1.0E-89 T 17-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 VI35_10925 8518c61c3ce346fd6dab06160a000938 336 Gene3D G3DSA:3.20.20.70 2 336 2.1E-137 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_10925 8518c61c3ce346fd6dab06160a000938 336 PIRSF PIRSF000164 11 336 3.7E-97 T 17-10-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 VI35_10925 8518c61c3ce346fd6dab06160a000938 336 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 292 312 - T 17-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 VI35_10925 8518c61c3ce346fd6dab06160a000938 336 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 80 99 - T 17-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 VI35_10925 8518c61c3ce346fd6dab06160a000938 336 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 3 336 9.9E-146 T 17-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 VI35_10925 8518c61c3ce346fd6dab06160a000938 336 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 2 336 51.342 T 17-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 VI35_10925 8518c61c3ce346fd6dab06160a000938 336 SUPERFAMILY SSF51395 1 334 4.4E-106 T 17-10-2018 VI35_14600 036c3cef4a7b358dca40745ea35c531f 326 Pfam PF00288 GHMP kinases N terminal domain 98 164 1.3E-12 T 17-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 VI35_14600 036c3cef4a7b358dca40745ea35c531f 326 PRINTS PR00958 Homoserine kinase signature 151 164 1.2E-30 T 17-10-2018 VI35_14600 036c3cef4a7b358dca40745ea35c531f 326 PRINTS PR00958 Homoserine kinase signature 189 206 1.2E-30 T 17-10-2018 VI35_14600 036c3cef4a7b358dca40745ea35c531f 326 PRINTS PR00958 Homoserine kinase signature 268 283 1.2E-30 T 17-10-2018 VI35_14600 036c3cef4a7b358dca40745ea35c531f 326 PRINTS PR00958 Homoserine kinase signature 111 126 1.2E-30 T 17-10-2018 VI35_14600 036c3cef4a7b358dca40745ea35c531f 326 PRINTS PR00958 Homoserine kinase signature 18 33 1.2E-30 T 17-10-2018 VI35_14600 036c3cef4a7b358dca40745ea35c531f 326 Gene3D G3DSA:3.30.70.890 182 291 3.1E-83 T 17-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily VI35_14600 036c3cef4a7b358dca40745ea35c531f 326 SUPERFAMILY SSF54211 12 199 1.67E-27 T 17-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VI35_14600 036c3cef4a7b358dca40745ea35c531f 326 Gene3D G3DSA:3.30.230.10 14 181 3.1E-83 T 17-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VI35_14600 036c3cef4a7b358dca40745ea35c531f 326 Pfam PF08544 GHMP kinases C terminal 241 301 3.4E-7 T 17-10-2018 IPR013750 GHMP kinase, C-terminal domain VI35_14600 036c3cef4a7b358dca40745ea35c531f 326 Hamap MF_00384 Homoserine kinase [thrB]. 13 322 27.694 T 17-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 VI35_14600 036c3cef4a7b358dca40745ea35c531f 326 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 104 115 - T 17-10-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 VI35_14600 036c3cef4a7b358dca40745ea35c531f 326 TIGRFAM TIGR00191 thrB: homoserine kinase 13 322 2.8E-92 T 17-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 VI35_14600 036c3cef4a7b358dca40745ea35c531f 326 SUPERFAMILY SSF55060 186 302 1.12E-26 T 17-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily VI35_14600 036c3cef4a7b358dca40745ea35c531f 326 PIRSF PIRSF000676 8 323 3.2E-76 T 17-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 VI35_12995 85ff252e99a95ac09e44dc71c821b25e 443 Pfam PF02321 Outer membrane efflux protein 25 218 9.8E-25 T 17-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VI35_12995 85ff252e99a95ac09e44dc71c821b25e 443 Pfam PF02321 Outer membrane efflux protein 240 424 3.1E-26 T 17-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VI35_12995 85ff252e99a95ac09e44dc71c821b25e 443 Gene3D G3DSA:1.20.1600.10 23 439 1.2E-74 T 17-10-2018 VI35_12995 85ff252e99a95ac09e44dc71c821b25e 443 SUPERFAMILY SSF56954 1 427 8.24E-81 T 17-10-2018 VI35_12995 85ff252e99a95ac09e44dc71c821b25e 443 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 21 439 8.6E-96 T 17-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 VI35_09565 65b85baeb63f9191f0ed7cb980609119 370 SMART SM00859 3 122 1.9E-26 T 17-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 VI35_09565 65b85baeb63f9191f0ed7cb980609119 370 Gene3D G3DSA:3.30.360.10 135 351 9.0E-145 T 17-10-2018 VI35_09565 65b85baeb63f9191f0ed7cb980609119 370 SUPERFAMILY SSF55347 134 355 3.12E-77 T 17-10-2018 VI35_09565 65b85baeb63f9191f0ed7cb980609119 370 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 3 121 1.5E-22 T 17-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 VI35_09565 65b85baeb63f9191f0ed7cb980609119 370 TIGRFAM TIGR01745 asd_gamma: aspartate-semialdehyde dehydrogenase 2 368 3.8E-204 T 17-10-2018 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VI35_09565 65b85baeb63f9191f0ed7cb980609119 370 PIRSF PIRSF000148 1 370 2.0E-68 T 17-10-2018 VI35_09565 65b85baeb63f9191f0ed7cb980609119 370 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 262 276 - T 17-10-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VI35_09565 65b85baeb63f9191f0ed7cb980609119 370 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 144 354 1.3E-58 T 17-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 VI35_09565 65b85baeb63f9191f0ed7cb980609119 370 SUPERFAMILY SSF51735 1 147 3.94E-51 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_09565 65b85baeb63f9191f0ed7cb980609119 370 Gene3D G3DSA:3.40.50.720 4 357 9.0E-145 T 17-10-2018 VI35_09565 65b85baeb63f9191f0ed7cb980609119 370 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 1 368 34.132 T 17-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VI35_18760 f6faadce88e734e4e75746a0afb8cbe1 260 Gene3D G3DSA:1.10.10.10 178 243 7.8E-25 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_18760 f6faadce88e734e4e75746a0afb8cbe1 260 SUPERFAMILY SSF75516 4 171 2.35E-36 T 17-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily VI35_18760 f6faadce88e734e4e75746a0afb8cbe1 260 Pfam PF00196 Bacterial regulatory proteins, luxR family 182 235 2.9E-13 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_18760 f6faadce88e734e4e75746a0afb8cbe1 260 Pfam PF03472 Autoinducer binding domain 22 165 5.1E-32 T 17-10-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain VI35_18760 f6faadce88e734e4e75746a0afb8cbe1 260 Gene3D G3DSA:3.30.450.80 2 172 5.6E-42 T 17-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily VI35_18760 f6faadce88e734e4e75746a0afb8cbe1 260 SMART SM00421 180 237 1.6E-20 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_18760 f6faadce88e734e4e75746a0afb8cbe1 260 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 213 225 2.1E-9 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_18760 f6faadce88e734e4e75746a0afb8cbe1 260 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 183 197 2.1E-9 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_18760 f6faadce88e734e4e75746a0afb8cbe1 260 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 197 213 2.1E-9 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_18760 f6faadce88e734e4e75746a0afb8cbe1 260 SUPERFAMILY SSF46894 163 242 4.42E-17 T 17-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VI35_18780 9a95531788f93300698ad79db289f617 642 TIGRFAM TIGR00851 mtlA: PTS system, mannitol-specific IIC component 9 344 1.2E-170 T 17-10-2018 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.197 VI35_18780 9a95531788f93300698ad79db289f617 642 Pfam PF02378 Phosphotransferase system, EIIC 18 277 5.4E-18 T 17-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 VI35_18780 9a95531788f93300698ad79db289f617 642 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 380 462 1.4E-11 T 17-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 VI35_18780 9a95531788f93300698ad79db289f617 642 Gene3D G3DSA:3.40.930.10 494 639 9.6E-44 T 17-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VI35_18780 9a95531788f93300698ad79db289f617 642 SUPERFAMILY SSF55804 499 636 5.76E-36 T 17-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VI35_18780 9a95531788f93300698ad79db289f617 642 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 542 558 - T 17-10-2018 IPR002178 PTS EIIA type-2 domain VI35_18780 9a95531788f93300698ad79db289f617 642 Gene3D G3DSA:3.40.50.2300 366 469 5.2E-35 T 17-10-2018 VI35_18780 9a95531788f93300698ad79db289f617 642 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 502 636 1.3E-29 T 17-10-2018 IPR002178 PTS EIIA type-2 domain VI35_18780 9a95531788f93300698ad79db289f617 642 SUPERFAMILY SSF52794 378 465 9.81E-24 T 17-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 VI35_10535 00d0452f27df3ff9d82c75ab68ec7d4d 248 SUPERFAMILY SSF51366 1 242 1.61E-64 T 17-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 VI35_10535 00d0452f27df3ff9d82c75ab68ec7d4d 248 Gene3D G3DSA:3.20.20.70 1 247 1.0E-92 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_10535 00d0452f27df3ff9d82c75ab68ec7d4d 248 Pfam PF00977 Histidine biosynthesis protein 1 233 5.0E-75 T 17-10-2018 IPR006062 Histidine biosynthesis GO:0000105 VI35_10535 00d0452f27df3ff9d82c75ab68ec7d4d 248 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 2 237 6.0E-79 T 17-10-2018 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 VI35_10535 00d0452f27df3ff9d82c75ab68ec7d4d 248 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 1 241 35.43 T 17-10-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 VI35_05565 c5f3dfb8bcbafb4a11e428f5d6b14069 292 Gene3D G3DSA:3.30.230.10 1 163 3.6E-56 T 17-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VI35_05565 c5f3dfb8bcbafb4a11e428f5d6b14069 292 Pfam PF00288 GHMP kinases N terminal domain 90 147 3.7E-10 T 17-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 VI35_05565 c5f3dfb8bcbafb4a11e428f5d6b14069 292 SUPERFAMILY SSF55060 164 281 3.74E-36 T 17-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily VI35_05565 c5f3dfb8bcbafb4a11e428f5d6b14069 292 SUPERFAMILY SSF54211 7 161 1.21E-45 T 17-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VI35_05565 c5f3dfb8bcbafb4a11e428f5d6b14069 292 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 6 281 1.1E-95 T 17-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 VI35_05565 c5f3dfb8bcbafb4a11e428f5d6b14069 292 Pfam PF08544 GHMP kinases C terminal 208 263 4.6E-7 T 17-10-2018 IPR013750 GHMP kinase, C-terminal domain VI35_05565 c5f3dfb8bcbafb4a11e428f5d6b14069 292 Gene3D G3DSA:3.30.70.890 164 281 5.1E-31 T 17-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily VI35_05565 c5f3dfb8bcbafb4a11e428f5d6b14069 292 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 7 269 33.053 T 17-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 VI35_05565 c5f3dfb8bcbafb4a11e428f5d6b14069 292 PIRSF PIRSF010376 5 280 6.1E-86 T 17-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 VI35_07535 c492dee4990f7a29c41047c98b62b34c 350 TIGRFAM TIGR01946 rnfD: electron transport complex, RnfABCDGE type, D subunit 7 346 2.6E-133 T 17-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 VI35_07535 c492dee4990f7a29c41047c98b62b34c 350 Hamap MF_00462 Ion-translocating oxidoreductase complex subunit D [rsxD]. 2 348 27.188 T 17-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 VI35_07535 c492dee4990f7a29c41047c98b62b34c 350 Pfam PF03116 NQR2, RnfD, RnfE family 4 346 1.5E-101 T 17-10-2018 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD GO:0016020|GO:0055085 VI35_19675 e08588de1d524d888a246ff7282e18dc 721 Gene3D G3DSA:2.130.10.120 110 441 3.2E-259 T 17-10-2018 VI35_19675 e08588de1d524d888a246ff7282e18dc 721 Gene3D G3DSA:3.40.50.1820 59 714 3.2E-259 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_19675 e08588de1d524d888a246ff7282e18dc 721 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 513 537 1.3E-54 T 17-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 VI35_19675 e08588de1d524d888a246ff7282e18dc 721 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 629 644 1.3E-54 T 17-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 VI35_19675 e08588de1d524d888a246ff7282e18dc 721 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 647 669 1.3E-54 T 17-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 VI35_19675 e08588de1d524d888a246ff7282e18dc 721 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 571 591 1.3E-54 T 17-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 VI35_19675 e08588de1d524d888a246ff7282e18dc 721 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 541 560 1.3E-54 T 17-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 VI35_19675 e08588de1d524d888a246ff7282e18dc 721 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 487 505 1.3E-54 T 17-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 VI35_19675 e08588de1d524d888a246ff7282e18dc 721 SUPERFAMILY SSF53474 447 699 1.84E-43 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_19675 e08588de1d524d888a246ff7282e18dc 721 SUPERFAMILY SSF50993 36 443 1.6E-94 T 17-10-2018 VI35_19675 e08588de1d524d888a246ff7282e18dc 721 Pfam PF00326 Prolyl oligopeptidase family 503 718 6.4E-71 T 17-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 VI35_19675 e08588de1d524d888a246ff7282e18dc 721 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 41 440 1.3E-105 T 17-10-2018 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 VI35_16500 e9bb86dd31615e466d4131ed0e07e86d 430 Gene3D G3DSA:1.10.4030.30 383 430 1.8E-6 T 17-10-2018 VI35_16500 e9bb86dd31615e466d4131ed0e07e86d 430 Gene3D G3DSA:1.10.4030.30 29 281 1.8E-77 T 17-10-2018 VI35_16500 e9bb86dd31615e466d4131ed0e07e86d 430 Gene3D G3DSA:3.10.50.40 283 382 9.0E-35 T 17-10-2018 VI35_16500 e9bb86dd31615e466d4131ed0e07e86d 430 SUPERFAMILY SSF109998 29 205 4.71E-41 T 17-10-2018 IPR027304 Trigger factor/SurA domain superfamily VI35_16500 e9bb86dd31615e466d4131ed0e07e86d 430 Pfam PF09312 SurA N-terminal domain 28 145 7.0E-38 T 17-10-2018 IPR015391 SurA N-terminal VI35_16500 e9bb86dd31615e466d4131ed0e07e86d 430 SUPERFAMILY SSF54534 176 278 2.35E-25 T 17-10-2018 VI35_16500 e9bb86dd31615e466d4131ed0e07e86d 430 Hamap MF_01183 Chaperone SurA [surA]. 12 430 33.705 T 17-10-2018 IPR023034 Peptidyl-prolyl isomerase SurA GO:0003755|GO:0006457|GO:0030288|GO:0042277|GO:0043165|GO:0050821|GO:0051082|GO:0060274 VI35_16500 e9bb86dd31615e466d4131ed0e07e86d 430 Gene3D G3DSA:3.10.50.40 175 277 1.8E-77 T 17-10-2018 VI35_16500 e9bb86dd31615e466d4131ed0e07e86d 430 SUPERFAMILY SSF54534 283 386 4.58E-32 T 17-10-2018 VI35_16500 e9bb86dd31615e466d4131ed0e07e86d 430 Pfam PF13616 PPIC-type PPIASE domain 281 385 1.3E-24 T 17-10-2018 VI35_16500 e9bb86dd31615e466d4131ed0e07e86d 430 Pfam PF00639 PPIC-type PPIASE domain 181 273 3.0E-19 T 17-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 VI35_14315 355b42ab0bdf3780829881a3b9d52e42 319 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 250 263 - T 17-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 VI35_14315 355b42ab0bdf3780829881a3b9d52e42 319 Pfam PF00294 pfkB family carbohydrate kinase 11 304 2.3E-64 T 17-10-2018 IPR011611 Carbohydrate kinase PfkB VI35_14315 355b42ab0bdf3780829881a3b9d52e42 319 SUPERFAMILY SSF53613 10 312 5.77E-79 T 17-10-2018 IPR029056 Ribokinase-like VI35_14315 355b42ab0bdf3780829881a3b9d52e42 319 PRINTS PR00990 Ribokinase signature 184 199 2.1E-5 T 17-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 VI35_14315 355b42ab0bdf3780829881a3b9d52e42 319 PRINTS PR00990 Ribokinase signature 221 232 2.1E-5 T 17-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 VI35_14315 355b42ab0bdf3780829881a3b9d52e42 319 PRINTS PR00990 Ribokinase signature 31 50 2.1E-5 T 17-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 VI35_14315 355b42ab0bdf3780829881a3b9d52e42 319 Gene3D G3DSA:3.40.1190.20 8 318 4.7E-91 T 17-10-2018 IPR029056 Ribokinase-like VI35_14315 355b42ab0bdf3780829881a3b9d52e42 319 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 36 60 - T 17-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 VI35_18680 14c87141c802b36056b493cc10eaca29 764 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 12 747 0.0 T 17-10-2018 VI35_18680 14c87141c802b36056b493cc10eaca29 764 SMART SM00434 15 465 1.5E-224 T 17-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VI35_18680 14c87141c802b36056b493cc10eaca29 764 Gene3D G3DSA:3.90.199.10 36 485 4.7E-175 T 17-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 VI35_18680 14c87141c802b36056b493cc10eaca29 764 Gene3D G3DSA:2.120.10.90 504 758 2.6E-14 T 17-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal VI35_18680 14c87141c802b36056b493cc10eaca29 764 SUPERFAMILY SSF56719 35 487 1.83E-152 T 17-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 VI35_18680 14c87141c802b36056b493cc10eaca29 764 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 651 695 1.6E-5 T 17-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 VI35_18680 14c87141c802b36056b493cc10eaca29 764 Gene3D G3DSA:1.10.268.10 373 458 4.7E-175 T 17-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 VI35_18680 14c87141c802b36056b493cc10eaca29 764 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 36 466 1.9E-131 T 17-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VI35_18680 14c87141c802b36056b493cc10eaca29 764 Gene3D G3DSA:3.30.1360.40 242 335 4.7E-175 T 17-10-2018 VI35_18680 14c87141c802b36056b493cc10eaca29 764 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 8 747 33.233 T 17-10-2018 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VI35_18680 14c87141c802b36056b493cc10eaca29 764 SUPERFAMILY SSF101904 501 745 7.32E-53 T 17-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal VI35_09750 2b4a086d440db7890e9f035260c21a1b 413 SMART SM00267 236 409 1.4E-57 T 17-10-2018 IPR000160 GGDEF domain VI35_09750 2b4a086d440db7890e9f035260c21a1b 413 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 245 407 2.6E-45 T 17-10-2018 IPR000160 GGDEF domain VI35_09750 2b4a086d440db7890e9f035260c21a1b 413 SUPERFAMILY SSF55073 252 404 7.69E-46 T 17-10-2018 IPR029787 Nucleotide cyclase VI35_09750 2b4a086d440db7890e9f035260c21a1b 413 Pfam PF17152 Periplasmic sensor domain 43 144 1.0E-26 T 17-10-2018 IPR033417 Periplasmic sensor domain CHASE8 VI35_09750 2b4a086d440db7890e9f035260c21a1b 413 Gene3D G3DSA:3.30.70.270 240 410 6.2E-56 T 17-10-2018 VI35_09750 2b4a086d440db7890e9f035260c21a1b 413 Pfam PF00990 Diguanylate cyclase, GGDEF domain 247 404 9.0E-48 T 17-10-2018 IPR000160 GGDEF domain VI35_09750 2b4a086d440db7890e9f035260c21a1b 413 SMART SM00304 181 234 3.6E-5 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_12530 110da65a34c455f5c8216e6fb9955702 598 Pfam PF07508 Recombinase 214 320 6.7E-11 T 17-10-2018 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 VI35_12530 110da65a34c455f5c8216e6fb9955702 598 SUPERFAMILY SSF53041 21 172 4.58E-8 T 17-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 VI35_12530 110da65a34c455f5c8216e6fb9955702 598 Gene3D G3DSA:3.40.50.1390 20 172 2.4E-8 T 17-10-2018 VI35_12530 110da65a34c455f5c8216e6fb9955702 598 SMART SM00857 23 179 1.6E-4 T 17-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 VI35_12530 110da65a34c455f5c8216e6fb9955702 598 Pfam PF13408 Recombinase zinc beta ribbon domain 338 393 2.0E-6 T 17-10-2018 IPR025827 Recombinase zinc beta ribbon domain VI35_12530 110da65a34c455f5c8216e6fb9955702 598 Pfam PF00239 Resolvase, N terminal domain 24 145 3.3E-6 T 17-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 VI35_12530 110da65a34c455f5c8216e6fb9955702 598 Gene3D G3DSA:1.10.10.2600 173 323 5.8E-7 T 17-10-2018 IPR038109 DNA-binding recombinase domain superfamily VI35_12105 7d4bbb08b89f630fa464a739b39eb039 314 SUPERFAMILY SSF53850 89 293 8.69E-30 T 17-10-2018 VI35_12105 7d4bbb08b89f630fa464a739b39eb039 314 Gene3D G3DSA:1.10.10.10 3 89 5.6E-26 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_12105 7d4bbb08b89f630fa464a739b39eb039 314 SUPERFAMILY SSF46785 7 111 3.54E-20 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_12105 7d4bbb08b89f630fa464a739b39eb039 314 Gene3D G3DSA:3.40.190.290 91 290 1.3E-46 T 17-10-2018 VI35_12105 7d4bbb08b89f630fa464a739b39eb039 314 Pfam PF03466 LysR substrate binding domain 90 289 4.5E-28 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_12105 7d4bbb08b89f630fa464a739b39eb039 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 9.1E-19 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_10940 5b93c7d8c277ed2ce38a9662cf94dd6f 874 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 15 872 0.0 T 17-10-2018 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 VI35_10940 5b93c7d8c277ed2ce38a9662cf94dd6f 874 Gene3D G3DSA:2.60.40.1840 447 548 4.6E-34 T 17-10-2018 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily VI35_10940 5b93c7d8c277ed2ce38a9662cf94dd6f 874 Pfam PF11940 Domain of unknown function (DUF3458) Ig-like fold 447 548 6.1E-33 T 17-10-2018 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold VI35_10940 5b93c7d8c277ed2ce38a9662cf94dd6f 874 Pfam PF17432 Domain of unknown function (DUF3458_C) ARM repeats 551 873 9.5E-114 T 17-10-2018 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal VI35_10940 5b93c7d8c277ed2ce38a9662cf94dd6f 874 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 179 194 2.5E-9 T 17-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 VI35_10940 5b93c7d8c277ed2ce38a9662cf94dd6f 874 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 129 144 2.5E-9 T 17-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 VI35_10940 5b93c7d8c277ed2ce38a9662cf94dd6f 874 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 316 328 2.5E-9 T 17-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 VI35_10940 5b93c7d8c277ed2ce38a9662cf94dd6f 874 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 297 312 2.5E-9 T 17-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 VI35_10940 5b93c7d8c277ed2ce38a9662cf94dd6f 874 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 261 271 2.5E-9 T 17-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 VI35_10940 5b93c7d8c277ed2ce38a9662cf94dd6f 874 Gene3D G3DSA:1.25.50.10 549 873 4.0E-113 T 17-10-2018 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily VI35_10940 5b93c7d8c277ed2ce38a9662cf94dd6f 874 Gene3D G3DSA:1.10.390.10 284 446 5.8E-65 T 17-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily VI35_10940 5b93c7d8c277ed2ce38a9662cf94dd6f 874 Pfam PF01433 Peptidase family M1 domain 211 442 2.3E-58 T 17-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 VI35_10940 5b93c7d8c277ed2ce38a9662cf94dd6f 874 SUPERFAMILY SSF63737 9 196 1.83E-46 T 17-10-2018 VI35_10940 5b93c7d8c277ed2ce38a9662cf94dd6f 874 SUPERFAMILY SSF55486 207 453 3.3E-75 T 17-10-2018 VI35_10940 5b93c7d8c277ed2ce38a9662cf94dd6f 874 Gene3D G3DSA:2.60.40.1730 18 197 5.4E-69 T 17-10-2018 VI35_10940 5b93c7d8c277ed2ce38a9662cf94dd6f 874 Gene3D G3DSA:1.10.1740.60 198 282 1.7E-38 T 17-10-2018 VI35_00900 2224b6926461777fbeaa06fd74ba6357 442 SMART SM01086 334 433 6.3E-23 T 17-10-2018 IPR019489 Clp ATPase, C-terminal VI35_00900 2224b6926461777fbeaa06fd74ba6357 442 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 334 404 2.3E-6 T 17-10-2018 IPR019489 Clp ATPase, C-terminal VI35_00900 2224b6926461777fbeaa06fd74ba6357 442 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 4 442 2.9E-225 T 17-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 VI35_00900 2224b6926461777fbeaa06fd74ba6357 442 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 53 137 2.0E-7 T 17-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VI35_00900 2224b6926461777fbeaa06fd74ba6357 442 SMART SM00382 49 331 2.1E-12 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_00900 2224b6926461777fbeaa06fd74ba6357 442 SUPERFAMILY SSF52540 3 440 1.31E-92 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_00900 2224b6926461777fbeaa06fd74ba6357 442 Gene3D G3DSA:1.10.8.60 334 439 3.3E-41 T 17-10-2018 VI35_00900 2224b6926461777fbeaa06fd74ba6357 442 Pfam PF07724 AAA domain (Cdc48 subfamily) 187 328 9.5E-41 T 17-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VI35_00900 2224b6926461777fbeaa06fd74ba6357 442 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 1 442 43.309 T 17-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 VI35_05095 be3ea0149b6b2ad7243317333069a835 858 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 14 171 4.9E-27 T 17-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_05095 be3ea0149b6b2ad7243317333069a835 858 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 416 571 1.3E-8 T 17-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_05095 be3ea0149b6b2ad7243317333069a835 858 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 617 652 5.7E-7 T 17-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_05095 be3ea0149b6b2ad7243317333069a835 858 Gene3D G3DSA:3.10.330.110 566 627 0.0 T 17-10-2018 VI35_05095 be3ea0149b6b2ad7243317333069a835 858 SUPERFAMILY SSF52374 7 666 1.43E-139 T 17-10-2018 VI35_05095 be3ea0149b6b2ad7243317333069a835 858 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 4 857 23.426 T 17-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 VI35_05095 be3ea0149b6b2ad7243317333069a835 858 Gene3D G3DSA:3.90.740.10 227 413 0.0 T 17-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 VI35_05095 be3ea0149b6b2ad7243317333069a835 858 Gene3D G3DSA:3.10.20.590 797 857 1.7E-23 T 17-10-2018 VI35_05095 be3ea0149b6b2ad7243317333069a835 858 Gene3D G3DSA:3.40.50.620 33 565 0.0 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_05095 be3ea0149b6b2ad7243317333069a835 858 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 221 403 7.8E-80 T 17-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 VI35_05095 be3ea0149b6b2ad7243317333069a835 858 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 17-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_05095 be3ea0149b6b2ad7243317333069a835 858 Pfam PF08264 Anticodon-binding domain of tRNA 698 817 1.6E-16 T 17-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 VI35_05095 be3ea0149b6b2ad7243317333069a835 858 SUPERFAMILY SSF50677 226 414 9.63E-57 T 17-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 VI35_05095 be3ea0149b6b2ad7243317333069a835 858 Gene3D G3DSA:1.10.730.10 8 789 0.0 T 17-10-2018 VI35_05095 be3ea0149b6b2ad7243317333069a835 858 SUPERFAMILY SSF47323 661 857 6.17E-36 T 17-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_05095 be3ea0149b6b2ad7243317333069a835 858 PRINTS PR00985 Leucyl-tRNA synthetase signature 127 144 4.1E-53 T 17-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 VI35_05095 be3ea0149b6b2ad7243317333069a835 858 PRINTS PR00985 Leucyl-tRNA synthetase signature 484 502 4.1E-53 T 17-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 VI35_05095 be3ea0149b6b2ad7243317333069a835 858 PRINTS PR00985 Leucyl-tRNA synthetase signature 153 169 4.1E-53 T 17-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 VI35_05095 be3ea0149b6b2ad7243317333069a835 858 PRINTS PR00985 Leucyl-tRNA synthetase signature 523 545 4.1E-53 T 17-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 VI35_05095 be3ea0149b6b2ad7243317333069a835 858 PRINTS PR00985 Leucyl-tRNA synthetase signature 556 566 4.1E-53 T 17-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 VI35_05095 be3ea0149b6b2ad7243317333069a835 858 PRINTS PR00985 Leucyl-tRNA synthetase signature 185 198 4.1E-53 T 17-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 VI35_05095 be3ea0149b6b2ad7243317333069a835 858 PRINTS PR00985 Leucyl-tRNA synthetase signature 215 234 4.1E-53 T 17-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 VI35_05095 be3ea0149b6b2ad7243317333069a835 858 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 7 857 0.0 T 17-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 VI35_16025 2f3b864d08c3f2909d0cf8f0d670b163 264 Pfam PF00455 DeoR C terminal sensor domain 78 232 3.1E-48 T 17-10-2018 IPR014036 DeoR C-terminal sensor domain VI35_16025 2f3b864d08c3f2909d0cf8f0d670b163 264 SMART SM00420 6 58 1.3E-20 T 17-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VI35_16025 2f3b864d08c3f2909d0cf8f0d670b163 264 SUPERFAMILY SSF100950 75 233 4.25E-27 T 17-10-2018 IPR037171 NagB/RpiA transferase-like VI35_16025 2f3b864d08c3f2909d0cf8f0d670b163 264 Pfam PF08220 DeoR-like helix-turn-helix domain 6 58 1.5E-15 T 17-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VI35_16025 2f3b864d08c3f2909d0cf8f0d670b163 264 SMART SM01134 73 233 3.4E-65 T 17-10-2018 VI35_16025 2f3b864d08c3f2909d0cf8f0d670b163 264 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 4.2E-6 T 17-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VI35_16025 2f3b864d08c3f2909d0cf8f0d670b163 264 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 4.2E-6 T 17-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VI35_16025 2f3b864d08c3f2909d0cf8f0d670b163 264 SUPERFAMILY SSF46785 5 64 4.89E-13 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_16025 2f3b864d08c3f2909d0cf8f0d670b163 264 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 17-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 VI35_16025 2f3b864d08c3f2909d0cf8f0d670b163 264 Gene3D G3DSA:1.10.10.10 1 59 4.5E-9 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_01140 80ea52494ef4dbc20a12c3acce576018 254 Gene3D G3DSA:3.40.190.10 105 204 1.4E-22 T 17-10-2018 VI35_01140 80ea52494ef4dbc20a12c3acce576018 254 SMART SM00062 19 250 2.6E-4 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_01140 80ea52494ef4dbc20a12c3acce576018 254 Gene3D G3DSA:3.40.190.10 28 247 1.4E-22 T 17-10-2018 VI35_01140 80ea52494ef4dbc20a12c3acce576018 254 SUPERFAMILY SSF53850 9 247 1.09E-31 T 17-10-2018 VI35_01140 80ea52494ef4dbc20a12c3acce576018 254 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 27 248 1.6E-17 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_08490 b0978ef75ff21905215cdda53fb173dc 410 Gene3D G3DSA:3.10.350.10 268 330 7.5E-18 T 17-10-2018 IPR036779 LysM domain superfamily VI35_08490 b0978ef75ff21905215cdda53fb173dc 410 SUPERFAMILY SSF54106 273 316 2.09E-10 T 17-10-2018 VI35_08490 b0978ef75ff21905215cdda53fb173dc 410 Pfam PF01476 LysM domain 274 316 1.5E-15 T 17-10-2018 IPR018392 LysM domain VI35_08490 b0978ef75ff21905215cdda53fb173dc 410 SMART SM00257 273 317 4.5E-13 T 17-10-2018 IPR018392 LysM domain VI35_06155 6f11991bc5f6ca2cded281a7f4281d55 315 Pfam PF00294 pfkB family carbohydrate kinase 4 302 9.0E-64 T 17-10-2018 IPR011611 Carbohydrate kinase PfkB VI35_06155 6f11991bc5f6ca2cded281a7f4281d55 315 SUPERFAMILY SSF53613 2 303 9.82E-74 T 17-10-2018 IPR029056 Ribokinase-like VI35_06155 6f11991bc5f6ca2cded281a7f4281d55 315 Gene3D G3DSA:3.40.1190.20 1 315 2.0E-84 T 17-10-2018 IPR029056 Ribokinase-like VI35_06155 6f11991bc5f6ca2cded281a7f4281d55 315 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 257 270 - T 17-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 VI35_16630 8a24ef81cdc88d0424c3c5eb68965eef 347 SUPERFAMILY SSF52540 1 239 5.44E-82 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_16630 8a24ef81cdc88d0424c3c5eb68965eef 347 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_16630 8a24ef81cdc88d0424c3c5eb68965eef 347 Gene3D G3DSA:3.30.70.260 233 343 2.8E-33 T 17-10-2018 VI35_16630 8a24ef81cdc88d0424c3c5eb68965eef 347 SMART SM00382 30 224 3.3E-15 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_16630 8a24ef81cdc88d0424c3c5eb68965eef 347 SMART SM00930 265 340 1.9E-25 T 17-10-2018 IPR018449 NIL domain VI35_16630 8a24ef81cdc88d0424c3c5eb68965eef 347 Pfam PF00005 ABC transporter 21 169 4.1E-34 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_16630 8a24ef81cdc88d0424c3c5eb68965eef 347 Pfam PF09383 NIL domain 268 339 1.5E-16 T 17-10-2018 IPR018449 NIL domain VI35_16630 8a24ef81cdc88d0424c3c5eb68965eef 347 TIGRFAM TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein 1 343 6.7E-171 T 17-10-2018 IPR012692 ABC transporter, methionine import, ATP-binding protein MetN, proteobacteria GO:0005524|GO:0009276|GO:0048473|GO:0048474 VI35_16630 8a24ef81cdc88d0424c3c5eb68965eef 347 Gene3D G3DSA:3.40.50.300 1 230 1.8E-72 T 17-10-2018 VI35_16630 8a24ef81cdc88d0424c3c5eb68965eef 347 SUPERFAMILY SSF55021 248 343 3.43E-23 T 17-10-2018 VI35_10715 6440d56a8fa28f1e61986b8a20493fc2 397 SUPERFAMILY SSF88697 4 72 1.55E-17 T 17-10-2018 IPR015947 PUA-like superfamily VI35_10715 6440d56a8fa28f1e61986b8a20493fc2 397 Gene3D G3DSA:3.40.50.150 182 396 1.3E-76 T 17-10-2018 VI35_10715 6440d56a8fa28f1e61986b8a20493fc2 397 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 171 339 8.6E-30 T 17-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 VI35_10715 6440d56a8fa28f1e61986b8a20493fc2 397 Gene3D G3DSA:3.30.750.80 73 181 1.3E-36 T 17-10-2018 VI35_10715 6440d56a8fa28f1e61986b8a20493fc2 397 SUPERFAMILY SSF53335 79 393 1.32E-77 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_10715 6440d56a8fa28f1e61986b8a20493fc2 397 Hamap MF_01857 Ribosomal RNA large subunit methyltransferase I [rlmI]. 1 397 72.025 T 17-10-2018 IPR023542 rRNA large subunit methyltransferase I GO:0008649 VI35_10715 6440d56a8fa28f1e61986b8a20493fc2 397 SMART SM00359 3 88 3.5E-13 T 17-10-2018 IPR002478 PUA domain GO:0003723 VI35_10715 6440d56a8fa28f1e61986b8a20493fc2 397 Gene3D G3DSA:2.30.130.10 1 72 8.6E-29 T 17-10-2018 IPR036974 PUA domain superfamily GO:0003723 VI35_18480 aa30920a5dfb56f908cb48dc6d2ac486 163 Pfam PF02464 Competence-damaged protein 9 161 3.4E-56 T 17-10-2018 IPR008136 CinA, C-terminal VI35_18480 aa30920a5dfb56f908cb48dc6d2ac486 163 Gene3D G3DSA:3.90.950.20 2 163 1.9E-58 T 17-10-2018 IPR036653 CinA-like, C-terminal VI35_18480 aa30920a5dfb56f908cb48dc6d2ac486 163 SUPERFAMILY SSF142433 6 162 8.24E-55 T 17-10-2018 IPR036653 CinA-like, C-terminal VI35_18480 aa30920a5dfb56f908cb48dc6d2ac486 163 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 14 159 3.1E-50 T 17-10-2018 IPR008136 CinA, C-terminal VI35_13070 a5f2207601c8beb151644b7a91007d78 408 Gene3D G3DSA:3.40.50.300 190 405 1.1E-49 T 17-10-2018 VI35_13070 a5f2207601c8beb151644b7a91007d78 408 Gene3D G3DSA:3.40.50.300 1 188 3.8E-69 T 17-10-2018 VI35_13070 a5f2207601c8beb151644b7a91007d78 408 SUPERFAMILY SSF52540 51 335 1.54E-73 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_13070 a5f2207601c8beb151644b7a91007d78 408 SUPERFAMILY SSF52540 2 77 1.49E-6 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_13070 a5f2207601c8beb151644b7a91007d78 408 SMART SM00487 1 206 2.5E-53 T 17-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VI35_13070 a5f2207601c8beb151644b7a91007d78 408 Pfam PF00270 DEAD/DEAH box helicase 2 173 5.1E-51 T 17-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VI35_13070 a5f2207601c8beb151644b7a91007d78 408 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 130 138 - T 17-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VI35_13070 a5f2207601c8beb151644b7a91007d78 408 Pfam PF00271 Helicase conserved C-terminal domain 209 316 1.8E-28 T 17-10-2018 IPR001650 Helicase, C-terminal VI35_13070 a5f2207601c8beb151644b7a91007d78 408 SMART SM00490 235 316 2.2E-31 T 17-10-2018 IPR001650 Helicase, C-terminal VI35_20270 80f3e318f63653ade87ba14b379f5c02 297 SUPERFAMILY SSF46785 4 111 4.76E-18 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_20270 80f3e318f63653ade87ba14b379f5c02 297 Gene3D G3DSA:3.40.190.10 164 265 1.8E-67 T 17-10-2018 VI35_20270 80f3e318f63653ade87ba14b379f5c02 297 SUPERFAMILY SSF53850 90 295 2.79E-48 T 17-10-2018 VI35_20270 80f3e318f63653ade87ba14b379f5c02 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 62 6.8E-17 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_20270 80f3e318f63653ade87ba14b379f5c02 297 Gene3D G3DSA:3.40.190.10 91 291 1.8E-67 T 17-10-2018 VI35_20270 80f3e318f63653ade87ba14b379f5c02 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 2.0E-6 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_20270 80f3e318f63653ade87ba14b379f5c02 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 2.0E-6 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_20270 80f3e318f63653ade87ba14b379f5c02 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 2.0E-6 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_20270 80f3e318f63653ade87ba14b379f5c02 297 Pfam PF03466 LysR substrate binding domain 90 294 3.9E-47 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_20270 80f3e318f63653ade87ba14b379f5c02 297 Gene3D G3DSA:1.10.10.10 2 87 6.5E-24 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_19835 176d67c8635138934312e5176a96fce4 105 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 3 98 20.354 T 17-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_19835 176d67c8635138934312e5176a96fce4 105 ProSitePatterns PS01108 Ribosomal protein L24 signature. 8 25 - T 17-10-2018 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_19835 176d67c8635138934312e5176a96fce4 105 SUPERFAMILY SSF50104 4 102 4.59E-35 T 17-10-2018 IPR008991 Translation protein SH3-like domain superfamily VI35_19835 176d67c8635138934312e5176a96fce4 105 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 40 102 1.6E-25 T 17-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_19835 176d67c8635138934312e5176a96fce4 105 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 3 103 4.9E-40 T 17-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_19835 176d67c8635138934312e5176a96fce4 105 Gene3D G3DSA:2.30.30.30 2 105 1.6E-39 T 17-10-2018 IPR014722 Ribosomal protein L2, domain 2 VI35_00030 d94621513dd251160551dd08d5568b2d 256 Gene3D G3DSA:3.60.15.10 1 255 4.3E-67 T 17-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VI35_00030 d94621513dd251160551dd08d5568b2d 256 SUPERFAMILY SSF56281 1 254 1.7E-18 T 17-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VI35_00030 d94621513dd251160551dd08d5568b2d 256 Pfam PF12706 Beta-lactamase superfamily domain 18 219 1.2E-11 T 17-10-2018 IPR001279 Metallo-beta-lactamase VI35_13505 1a9e053dc2e1c8256b4c21d8b1fbe506 182 SUPERFAMILY SSF53927 13 165 7.36E-56 T 17-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 VI35_13505 1a9e053dc2e1c8256b4c21d8b1fbe506 182 Pfam PF14437 MafB19-like deaminase 15 161 3.5E-31 T 17-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 VI35_13505 1a9e053dc2e1c8256b4c21d8b1fbe506 182 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 20 161 45.414 T 17-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 VI35_13505 1a9e053dc2e1c8256b4c21d8b1fbe506 182 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 65 102 - T 17-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 VI35_13505 1a9e053dc2e1c8256b4c21d8b1fbe506 182 Gene3D G3DSA:3.40.140.10 9 174 1.4E-61 T 17-10-2018 VI35_19345 8babb3610618c46a4428bd4badfb2875 376 Pfam PF01966 HD domain 178 314 1.7E-18 T 17-10-2018 IPR006674 HD domain VI35_19345 8babb3610618c46a4428bd4badfb2875 376 Pfam PF00072 Response regulator receiver domain 14 124 1.3E-23 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_19345 8babb3610618c46a4428bd4badfb2875 376 Gene3D G3DSA:1.10.3210.10 151 368 3.3E-78 T 17-10-2018 VI35_19345 8babb3610618c46a4428bd4badfb2875 376 SUPERFAMILY SSF52172 10 156 5.27E-35 T 17-10-2018 IPR011006 CheY-like superfamily VI35_19345 8babb3610618c46a4428bd4badfb2875 376 SUPERFAMILY SSF109604 159 353 8.48E-33 T 17-10-2018 VI35_19345 8babb3610618c46a4428bd4badfb2875 376 SMART SM00471 173 324 1.3E-9 T 17-10-2018 IPR003607 HD/PDEase domain VI35_19345 8babb3610618c46a4428bd4badfb2875 376 SMART SM00448 11 124 7.8E-33 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_19345 8babb3610618c46a4428bd4badfb2875 376 Gene3D G3DSA:3.40.50.2300 5 142 8.8E-35 T 17-10-2018 VI35_02855 74fe54f6581f0147b6b3e108e94b5129 187 Gene3D G3DSA:3.55.40.10 42 187 7.2E-38 T 17-10-2018 VI35_02855 74fe54f6581f0147b6b3e108e94b5129 187 PRINTS PR00885 Bacterial general secretion pathway protein H signature 139 154 9.3E-17 T 17-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 VI35_02855 74fe54f6581f0147b6b3e108e94b5129 187 PRINTS PR00885 Bacterial general secretion pathway protein H signature 23 37 9.3E-17 T 17-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 VI35_02855 74fe54f6581f0147b6b3e108e94b5129 187 PRINTS PR00885 Bacterial general secretion pathway protein H signature 8 22 9.3E-17 T 17-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 VI35_02855 74fe54f6581f0147b6b3e108e94b5129 187 Pfam PF07963 Prokaryotic N-terminal methylation motif 8 32 5.6E-6 T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_02855 74fe54f6581f0147b6b3e108e94b5129 187 TIGRFAM TIGR01708 typeII_sec_gspH: type II secretion system protein H 9 179 4.7E-57 T 17-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 VI35_02855 74fe54f6581f0147b6b3e108e94b5129 187 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 10 32 7.4E-5 T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_02855 74fe54f6581f0147b6b3e108e94b5129 187 SUPERFAMILY SSF54523 13 95 3.14E-10 T 17-10-2018 VI35_02855 74fe54f6581f0147b6b3e108e94b5129 187 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 11 31 - T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_02855 74fe54f6581f0147b6b3e108e94b5129 187 Pfam PF12019 Type II transport protein GspH 48 160 1.3E-7 T 17-10-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 VI35_16220 34ae1c44a3a35d0242296959ecbde72b 142 Gene3D G3DSA:1.10.10.10 1 141 7.8E-33 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_16220 34ae1c44a3a35d0242296959ecbde72b 142 Pfam PF01047 MarR family 32 89 4.9E-14 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_16220 34ae1c44a3a35d0242296959ecbde72b 142 PRINTS PR00598 Bacterial regulatory protein MarR family signature 66 81 3.2E-8 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_16220 34ae1c44a3a35d0242296959ecbde72b 142 PRINTS PR00598 Bacterial regulatory protein MarR family signature 49 65 3.2E-8 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_16220 34ae1c44a3a35d0242296959ecbde72b 142 PRINTS PR00598 Bacterial regulatory protein MarR family signature 85 101 3.2E-8 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_16220 34ae1c44a3a35d0242296959ecbde72b 142 SUPERFAMILY SSF46785 5 140 5.61E-30 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_16220 34ae1c44a3a35d0242296959ecbde72b 142 SMART SM00347 25 125 2.2E-15 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_16220 34ae1c44a3a35d0242296959ecbde72b 142 ProSitePatterns PS01117 MarR-type HTH domain signature. 64 98 - T 17-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site VI35_04425 0d117637f2ac1840669e629093171fd6 422 Gene3D G3DSA:3.40.50.1820 18 422 2.8E-107 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_04425 0d117637f2ac1840669e629093171fd6 422 Pfam PF06500 Alpha/beta hydrolase of unknown function (DUF1100) 7 421 2.5E-130 T 17-10-2018 IPR010520 UPF0255 family VI35_04425 0d117637f2ac1840669e629093171fd6 422 SUPERFAMILY SSF53474 51 420 1.49E-49 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_07450 39a48d3c389031fadef228fff09a415e 187 SUPERFAMILY SSF55729 28 180 3.67E-25 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_07450 39a48d3c389031fadef228fff09a415e 187 Gene3D G3DSA:3.40.630.30 5 187 2.7E-40 T 17-10-2018 VI35_07450 39a48d3c389031fadef228fff09a415e 187 TIGRFAM TIGR03585 PseH: UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase 22 177 5.2E-33 T 17-10-2018 IPR020036 UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase VI35_07450 39a48d3c389031fadef228fff09a415e 187 Pfam PF13302 Acetyltransferase (GNAT) domain 33 154 1.8E-9 T 17-10-2018 IPR000182 GNAT domain VI35_20350 b7ac8af4ac4bebb02abf0b80273863a7 715 Pfam PF03781 Sulfatase-modifying factor enzyme 1 209 459 7.3E-25 T 17-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 VI35_20350 b7ac8af4ac4bebb02abf0b80273863a7 715 SUPERFAMILY SSF53335 470 667 1.02E-27 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_20350 b7ac8af4ac4bebb02abf0b80273863a7 715 Pfam PF08241 Methyltransferase domain 517 641 4.0E-11 T 17-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 VI35_20350 b7ac8af4ac4bebb02abf0b80273863a7 715 TIGRFAM TIGR04344 ovoA_Nterm: 5-histidylcysteine sulfoxide synthase 19 460 2.6E-203 T 17-10-2018 IPR027577 5-histidylcysteine sulfoxide synthase VI35_20350 b7ac8af4ac4bebb02abf0b80273863a7 715 TIGRFAM TIGR04345 ovoA_Cterm: putative 4-mercaptohistidine N1-methyltranferase 474 714 1.2E-94 T 17-10-2018 IPR027625 Putative 4-mercaptohistidine N1-methyltranferase, OvoA C-terminal domain VI35_20350 b7ac8af4ac4bebb02abf0b80273863a7 715 Gene3D G3DSA:3.90.1580.10 195 469 6.0E-25 T 17-10-2018 VI35_20350 b7ac8af4ac4bebb02abf0b80273863a7 715 Pfam PF12867 DinB superfamily 43 173 9.5E-10 T 17-10-2018 IPR024775 DinB-like domain VI35_20350 b7ac8af4ac4bebb02abf0b80273863a7 715 Gene3D G3DSA:3.40.50.150 480 655 3.5E-28 T 17-10-2018 VI35_20350 b7ac8af4ac4bebb02abf0b80273863a7 715 SUPERFAMILY SSF56436 207 461 1.13E-53 T 17-10-2018 IPR016187 C-type lectin fold VI35_03535 83f7ac22a0e7bde5a5bb2e8757da8125 197 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 6 189 6.1E-82 T 17-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 VI35_03535 83f7ac22a0e7bde5a5bb2e8757da8125 197 Gene3D G3DSA:3.40.50.300 1 197 8.2E-82 T 17-10-2018 VI35_03535 83f7ac22a0e7bde5a5bb2e8757da8125 197 Pfam PF01583 Adenylylsulphate kinase 24 174 5.0E-73 T 17-10-2018 VI35_03535 83f7ac22a0e7bde5a5bb2e8757da8125 197 SUPERFAMILY SSF52540 21 193 3.8E-39 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_03535 83f7ac22a0e7bde5a5bb2e8757da8125 197 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 22 194 38.919 T 17-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 VI35_14025 a90614a7bd7e9719f9c75ff3cf2a194e 544 TIGRFAM TIGR00565 trpE_proteo: anthranilate synthase component I 22 524 6.4E-210 T 17-10-2018 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VI35_14025 a90614a7bd7e9719f9c75ff3cf2a194e 544 Pfam PF00425 chorismate binding enzyme 253 512 1.9E-84 T 17-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal VI35_14025 a90614a7bd7e9719f9c75ff3cf2a194e 544 SUPERFAMILY SSF56322 16 520 1.57E-153 T 17-10-2018 IPR005801 ADC synthase GO:0009058 VI35_14025 a90614a7bd7e9719f9c75ff3cf2a194e 544 PIRSF PIRSF001373 1 531 1.5E-247 T 17-10-2018 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VI35_14025 a90614a7bd7e9719f9c75ff3cf2a194e 544 PRINTS PR00095 Anthranilate synthase component I signature 374 387 3.8E-23 T 17-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VI35_14025 a90614a7bd7e9719f9c75ff3cf2a194e 544 PRINTS PR00095 Anthranilate synthase component I signature 469 483 3.8E-23 T 17-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VI35_14025 a90614a7bd7e9719f9c75ff3cf2a194e 544 PRINTS PR00095 Anthranilate synthase component I signature 360 373 3.8E-23 T 17-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VI35_14025 a90614a7bd7e9719f9c75ff3cf2a194e 544 PRINTS PR00095 Anthranilate synthase component I signature 454 468 3.8E-23 T 17-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VI35_14025 a90614a7bd7e9719f9c75ff3cf2a194e 544 Gene3D G3DSA:3.60.120.10 8 527 4.1E-178 T 17-10-2018 IPR005801 ADC synthase GO:0009058 VI35_14025 a90614a7bd7e9719f9c75ff3cf2a194e 544 Pfam PF04715 Anthranilate synthase component I, N terminal region 24 197 1.9E-18 T 17-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VI35_20465 9ea495d057d776b2b154be2b84056b1a 451 SMART SM00304 183 236 3.1E-12 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_20465 9ea495d057d776b2b154be2b84056b1a 451 SUPERFAMILY SSF47384 220 297 9.81E-15 T 17-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VI35_20465 9ea495d057d776b2b154be2b84056b1a 451 SUPERFAMILY SSF55874 289 450 8.38E-36 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_20465 9ea495d057d776b2b154be2b84056b1a 451 Pfam PF00672 HAMP domain 183 232 2.1E-10 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_20465 9ea495d057d776b2b154be2b84056b1a 451 Pfam PF00512 His Kinase A (phospho-acceptor) domain 238 297 1.3E-12 T 17-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VI35_20465 9ea495d057d776b2b154be2b84056b1a 451 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 347 450 1.7E-17 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_20465 9ea495d057d776b2b154be2b84056b1a 451 Gene3D G3DSA:1.20.1480.50 156 242 6.6E-19 T 17-10-2018 VI35_20465 9ea495d057d776b2b154be2b84056b1a 451 SMART SM00388 237 299 1.4E-11 T 17-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VI35_20465 9ea495d057d776b2b154be2b84056b1a 451 SMART SM00387 342 451 3.1E-26 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_20465 9ea495d057d776b2b154be2b84056b1a 451 Gene3D G3DSA:3.30.565.10 304 450 2.2E-33 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_20465 9ea495d057d776b2b154be2b84056b1a 451 Gene3D G3DSA:1.10.287.130 243 300 4.1E-11 T 17-10-2018 VI35_20465 9ea495d057d776b2b154be2b84056b1a 451 SUPERFAMILY SSF158472 183 235 8.24E-13 T 17-10-2018 VI35_20465 9ea495d057d776b2b154be2b84056b1a 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 377 391 5.3E-15 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_20465 9ea495d057d776b2b154be2b84056b1a 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 395 405 5.3E-15 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_20465 9ea495d057d776b2b154be2b84056b1a 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 436 449 5.3E-15 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_20465 9ea495d057d776b2b154be2b84056b1a 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 412 430 5.3E-15 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_21085 1edf5eafb20e6ed310649e1b3bf69f0f 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 221 4.0E-24 T 17-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VI35_21085 1edf5eafb20e6ed310649e1b3bf69f0f 224 Gene3D G3DSA:3.40.50.2300 1 130 1.8E-29 T 17-10-2018 VI35_21085 1edf5eafb20e6ed310649e1b3bf69f0f 224 Pfam PF00072 Response regulator receiver domain 6 114 1.1E-22 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_21085 1edf5eafb20e6ed310649e1b3bf69f0f 224 SMART SM00862 145 221 1.1E-26 T 17-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VI35_21085 1edf5eafb20e6ed310649e1b3bf69f0f 224 SUPERFAMILY SSF46894 125 222 4.25E-24 T 17-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VI35_21085 1edf5eafb20e6ed310649e1b3bf69f0f 224 Gene3D G3DSA:1.10.10.10 131 224 2.2E-27 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_21085 1edf5eafb20e6ed310649e1b3bf69f0f 224 SUPERFAMILY SSF52172 2 129 1.2E-34 T 17-10-2018 IPR011006 CheY-like superfamily VI35_21085 1edf5eafb20e6ed310649e1b3bf69f0f 224 SMART SM00448 4 114 1.3E-34 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_11745 f669ece93de24e46c57633b2ca7d19e9 559 Gene3D G3DSA:1.10.10.1100 415 484 8.7E-19 T 17-10-2018 VI35_11745 f669ece93de24e46c57633b2ca7d19e9 559 TIGRFAM TIGR03377 glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit 7 532 7.7E-262 T 17-10-2018 IPR017752 Glycerol-3-phosphate dehydrogenase, GlpA subunit GO:0004368|GO:0005886|GO:0010181|GO:0046174|GO:0050660|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 VI35_11745 f669ece93de24e46c57633b2ca7d19e9 559 Gene3D G3DSA:3.30.9.10 83 315 4.1E-75 T 17-10-2018 VI35_11745 f669ece93de24e46c57633b2ca7d19e9 559 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 19 29 8.7E-19 T 17-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VI35_11745 f669ece93de24e46c57633b2ca7d19e9 559 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 35 47 8.7E-19 T 17-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VI35_11745 f669ece93de24e46c57633b2ca7d19e9 559 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 6 18 8.7E-19 T 17-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VI35_11745 f669ece93de24e46c57633b2ca7d19e9 559 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 308 314 8.7E-19 T 17-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VI35_11745 f669ece93de24e46c57633b2ca7d19e9 559 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 344 356 8.7E-19 T 17-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VI35_11745 f669ece93de24e46c57633b2ca7d19e9 559 Gene3D G3DSA:3.50.50.60 8 363 4.1E-75 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_11745 f669ece93de24e46c57633b2ca7d19e9 559 Pfam PF04324 BFD-like [2Fe-2S] binding domain 426 479 1.1E-9 T 17-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain VI35_11745 f669ece93de24e46c57633b2ca7d19e9 559 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 349 359 - T 17-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VI35_11745 f669ece93de24e46c57633b2ca7d19e9 559 Pfam PF01266 FAD dependent oxidoreductase 8 356 4.4E-51 T 17-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 VI35_11745 f669ece93de24e46c57633b2ca7d19e9 559 SUPERFAMILY SSF51905 6 316 9.5E-43 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_03175 c7b7d0f25868e567ddf854f3e04580bb 201 PIRSF PIRSF006158 2 200 1.8E-55 T 17-10-2018 IPR016476 SH3 domain protein VI35_03175 c7b7d0f25868e567ddf854f3e04580bb 201 Pfam PF08239 Bacterial SH3 domain 30 80 9.6E-8 T 17-10-2018 IPR003646 SH3-like domain, bacterial-type VI35_03175 c7b7d0f25868e567ddf854f3e04580bb 201 Gene3D G3DSA:2.30.30.40 17 82 1.4E-7 T 17-10-2018 VI35_03175 c7b7d0f25868e567ddf854f3e04580bb 201 SMART SM00287 18 83 7.4E-7 T 17-10-2018 IPR003646 SH3-like domain, bacterial-type VI35_03175 c7b7d0f25868e567ddf854f3e04580bb 201 TIGRFAM TIGR04211 SH3_and_anchor: SH3 domain protein 22 199 7.5E-54 T 17-10-2018 IPR016476 SH3 domain protein VI35_02840 79b8a6e5b6049377fc1ccec54112976f 501 Gene3D G3DSA:3.30.300.160 8 93 1.7E-21 T 17-10-2018 VI35_02840 79b8a6e5b6049377fc1ccec54112976f 501 Gene3D G3DSA:3.40.50.300 227 501 1.9E-119 T 17-10-2018 VI35_02840 79b8a6e5b6049377fc1ccec54112976f 501 SUPERFAMILY SSF52540 110 498 5.62E-107 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_02840 79b8a6e5b6049377fc1ccec54112976f 501 SMART SM00382 254 380 2.0E-7 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_02840 79b8a6e5b6049377fc1ccec54112976f 501 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 321 335 - T 17-10-2018 IPR001482 Type II/IV secretion system protein VI35_02840 79b8a6e5b6049377fc1ccec54112976f 501 Pfam PF00437 Type II/IV secretion system protein 127 393 2.2E-93 T 17-10-2018 IPR001482 Type II/IV secretion system protein VI35_02840 79b8a6e5b6049377fc1ccec54112976f 501 TIGRFAM TIGR02533 type_II_gspE: type II secretion system protein E 17 498 1.0E-213 T 17-10-2018 IPR013369 Type II secretion system GspE GO:0005524|GO:0008565|GO:0015627|GO:0015628 VI35_02840 79b8a6e5b6049377fc1ccec54112976f 501 SUPERFAMILY SSF160246 16 80 1.49E-15 T 17-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily VI35_02840 79b8a6e5b6049377fc1ccec54112976f 501 Gene3D G3DSA:3.30.450.90 94 226 1.1E-53 T 17-10-2018 VI35_15230 6e77bf9fec6d20e3a0524f2617b653fa 505 SUPERFAMILY SSF53720 13 495 6.02E-158 T 17-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 VI35_15230 6e77bf9fec6d20e3a0524f2617b653fa 505 Gene3D G3DSA:3.40.309.10 265 462 8.4E-161 T 17-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 VI35_15230 6e77bf9fec6d20e3a0524f2617b653fa 505 Pfam PF00171 Aldehyde dehydrogenase family 27 492 3.1E-160 T 17-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 VI35_15230 6e77bf9fec6d20e3a0524f2617b653fa 505 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 294 305 - T 17-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 VI35_15230 6e77bf9fec6d20e3a0524f2617b653fa 505 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 261 268 - T 17-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 VI35_15230 6e77bf9fec6d20e3a0524f2617b653fa 505 Gene3D G3DSA:3.40.605.10 35 490 8.4E-161 T 17-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 VI35_07380 0b00d7fff34c2679304e595cad6309d0 793 SUPERFAMILY SSF53955 70 288 8.44E-60 T 17-10-2018 IPR023346 Lysozyme-like domain superfamily VI35_07380 0b00d7fff34c2679304e595cad6309d0 793 Pfam PF00905 Penicillin binding protein transpeptidase domain 332 452 7.1E-13 T 17-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 VI35_07380 0b00d7fff34c2679304e595cad6309d0 793 Pfam PF00912 Transglycosylase 83 256 1.2E-47 T 17-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VI35_07380 0b00d7fff34c2679304e595cad6309d0 793 TIGRFAM TIGR02073 PBP_1c: penicillin-binding protein 1C 71 789 9.1E-219 T 17-10-2018 IPR011815 Penicillin-binding protein 1C GO:0008955|GO:0009252 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VI35_07380 0b00d7fff34c2679304e595cad6309d0 793 Gene3D G3DSA:3.40.710.10 285 635 1.5E-68 T 17-10-2018 VI35_07380 0b00d7fff34c2679304e595cad6309d0 793 Pfam PF06832 Penicillin-Binding Protein C-terminus Family 710 787 2.2E-6 T 17-10-2018 IPR009647 Penicillin-binding, C-terminal KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VI35_07380 0b00d7fff34c2679304e595cad6309d0 793 Gene3D G3DSA:1.10.3810.10 74 269 1.3E-50 T 17-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VI35_07380 0b00d7fff34c2679304e595cad6309d0 793 SUPERFAMILY SSF56601 238 654 3.34E-88 T 17-10-2018 IPR012338 Beta-lactamase/transpeptidase-like VI35_10655 f9b60c113b57d1b15f29c514e664faab 356 Gene3D G3DSA:1.10.10.10 228 355 9.5E-10 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_10655 f9b60c113b57d1b15f29c514e664faab 356 Pfam PF00196 Bacterial regulatory proteins, luxR family 298 350 8.1E-6 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_10655 f9b60c113b57d1b15f29c514e664faab 356 SMART SM00421 295 352 1.6E-6 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_10655 f9b60c113b57d1b15f29c514e664faab 356 SUPERFAMILY SSF46894 286 353 1.33E-11 T 17-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VI35_05820 ed6a4f1363c1dcb192d4275ee9832287 332 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 242 308 2.2E-17 T 17-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VI35_05820 ed6a4f1363c1dcb192d4275ee9832287 332 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_05820 ed6a4f1363c1dcb192d4275ee9832287 332 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 240 328 7.2E-22 T 17-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VI35_05820 ed6a4f1363c1dcb192d4275ee9832287 332 Pfam PF00005 ABC transporter 35 191 2.2E-31 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_05820 ed6a4f1363c1dcb192d4275ee9832287 332 Gene3D G3DSA:3.40.50.300 8 332 5.6E-82 T 17-10-2018 VI35_05820 ed6a4f1363c1dcb192d4275ee9832287 332 SMART SM00382 44 240 1.1E-11 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_05820 ed6a4f1363c1dcb192d4275ee9832287 332 SUPERFAMILY SSF52540 10 261 2.19E-63 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_10630 434ba267d94ac011ae5f5193046819ea 827 Pfam PF13177 DNA polymerase III, delta subunit 20 178 1.5E-43 T 17-10-2018 VI35_10630 434ba267d94ac011ae5f5193046819ea 827 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 355 1.4E-130 T 17-10-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 VI35_10630 434ba267d94ac011ae5f5193046819ea 827 Pfam PF12170 DNA polymerase III tau subunit V interacting with alpha 690 822 1.8E-32 T 17-10-2018 IPR021029 DNA polymerase III, tau subunit, domain V GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_10630 434ba267d94ac011ae5f5193046819ea 827 Gene3D G3DSA:3.40.50.300 13 177 5.9E-101 T 17-10-2018 VI35_10630 434ba267d94ac011ae5f5193046819ea 827 Gene3D G3DSA:1.10.8.60 8 239 5.9E-101 T 17-10-2018 VI35_10630 434ba267d94ac011ae5f5193046819ea 827 Gene3D G3DSA:3.30.300.150 676 807 4.1E-27 T 17-10-2018 IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_10630 434ba267d94ac011ae5f5193046819ea 827 Gene3D G3DSA:1.20.272.10 242 361 1.1E-40 T 17-10-2018 VI35_10630 434ba267d94ac011ae5f5193046819ea 827 SUPERFAMILY SSF52540 33 222 1.91E-57 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_10630 434ba267d94ac011ae5f5193046819ea 827 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 232 359 1.7E-28 T 17-10-2018 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 VI35_10630 434ba267d94ac011ae5f5193046819ea 827 SMART SM00382 37 178 3.0E-9 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_10630 434ba267d94ac011ae5f5193046819ea 827 SUPERFAMILY SSF48019 243 360 1.26E-29 T 17-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 VI35_10895 566e2e76e552ba0516f188927391c3bb 58 Pfam PF04957 Ribosome modulation factor 1 54 7.8E-27 T 17-10-2018 IPR007040 Ribosome modulation factor VI35_10895 566e2e76e552ba0516f188927391c3bb 58 Hamap MF_00919 Ribosome modulation factor [rmf]. 1 55 30.553 T 17-10-2018 IPR007040 Ribosome modulation factor VI35_10895 566e2e76e552ba0516f188927391c3bb 58 ProDom PD051650 RIBOSOME MODULATION FACTOR E FACTOR-RELATED DIMERIZATION BIOGENESIS RIBOSOMES INVOLVED 70S 1 52 4.0E-17 T 17-10-2018 IPR007040 Ribosome modulation factor VI35_10895 566e2e76e552ba0516f188927391c3bb 58 Gene3D G3DSA:1.10.10.620 1 56 2.8E-24 T 17-10-2018 IPR023200 Ribosome modulation factor domain superfamily VI35_01440 8df34a93f480b11f96243e5909b515af 350 SUPERFAMILY SSF55909 6 345 2.5E-110 T 17-10-2018 VI35_01440 8df34a93f480b11f96243e5909b515af 350 Gene3D G3DSA:3.75.10.10 5 349 4.6E-113 T 17-10-2018 VI35_01440 8df34a93f480b11f96243e5909b515af 350 Pfam PF04371 Porphyromonas-type peptidyl-arginine deiminase 13 344 2.1E-104 T 17-10-2018 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type GO:0004668|GO:0009446 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 VI35_02710 6921fa244028c452480af98186a82ddd 196 TIGRFAM TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase 7 186 5.1E-48 T 17-10-2018 IPR010976 Beta-phosphoglucomutase hydrolase VI35_02710 6921fa244028c452480af98186a82ddd 196 SUPERFAMILY SSF56784 6 191 1.63E-50 T 17-10-2018 IPR036412 HAD-like superfamily VI35_02710 6921fa244028c452480af98186a82ddd 196 Pfam PF13419 Haloacid dehalogenase-like hydrolase 9 186 1.1E-30 T 17-10-2018 VI35_02710 6921fa244028c452480af98186a82ddd 196 Gene3D G3DSA:1.10.150.240 19 89 9.3E-50 T 17-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 VI35_02710 6921fa244028c452480af98186a82ddd 196 Gene3D G3DSA:3.40.50.1000 7 189 9.3E-50 T 17-10-2018 IPR023214 HAD superfamily VI35_02710 6921fa244028c452480af98186a82ddd 196 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 124 186 3.1E-15 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_02710 6921fa244028c452480af98186a82ddd 196 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 148 168 6.6E-10 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_02710 6921fa244028c452480af98186a82ddd 196 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 6 17 6.6E-10 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_02710 6921fa244028c452480af98186a82ddd 196 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 130 146 6.6E-10 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_02710 6921fa244028c452480af98186a82ddd 196 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 175 188 6.6E-10 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_17960 0161f156b3abba7479a0f7e53579b2d2 263 Pfam PF01578 Cytochrome C assembly protein 41 261 3.9E-37 T 17-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 VI35_20200 46a041f5e837498f528d85186460a34f 498 Gene3D G3DSA:3.40.605.10 25 459 9.5E-150 T 17-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 VI35_20200 46a041f5e837498f528d85186460a34f 498 SUPERFAMILY SSF53720 3 484 8.25E-146 T 17-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 VI35_20200 46a041f5e837498f528d85186460a34f 498 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 275 286 - T 17-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 VI35_20200 46a041f5e837498f528d85186460a34f 498 Gene3D G3DSA:3.40.309.10 250 451 9.5E-150 T 17-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 VI35_20200 46a041f5e837498f528d85186460a34f 498 Pfam PF00171 Aldehyde dehydrogenase family 16 478 3.4E-137 T 17-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 VI35_20200 46a041f5e837498f528d85186460a34f 498 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 7 482 3.8E-205 T 17-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 VI35_00050 220443cc9a5e181eedfa1c5f4d03150c 77 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 68 - T 17-10-2018 IPR010916 TonB box, conserved site VI35_10625 cf75e6a9541b9647ed007d8c076e5780 181 Gene3D G3DSA:3.40.50.2020 1 180 3.7E-66 T 17-10-2018 VI35_10625 cf75e6a9541b9647ed007d8c076e5780 181 SUPERFAMILY SSF53271 13 177 7.38E-53 T 17-10-2018 IPR029057 Phosphoribosyltransferase-like VI35_10625 cf75e6a9541b9647ed007d8c076e5780 181 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 9 178 38.296 T 17-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 VI35_10625 cf75e6a9541b9647ed007d8c076e5780 181 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 10 177 5.7E-71 T 17-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 VI35_10625 cf75e6a9541b9647ed007d8c076e5780 181 Pfam PF00156 Phosphoribosyl transferase domain 32 155 1.3E-15 T 17-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 VI35_09285 e487922cf9c84c45cd68f473a47dfbf2 470 PRINTS PR01050 Pyruvate kinase family signature 294 312 2.3E-77 T 17-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_09285 e487922cf9c84c45cd68f473a47dfbf2 470 PRINTS PR01050 Pyruvate kinase family signature 244 268 2.3E-77 T 17-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_09285 e487922cf9c84c45cd68f473a47dfbf2 470 PRINTS PR01050 Pyruvate kinase family signature 186 200 2.3E-77 T 17-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_09285 e487922cf9c84c45cd68f473a47dfbf2 470 PRINTS PR01050 Pyruvate kinase family signature 269 293 2.3E-77 T 17-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_09285 e487922cf9c84c45cd68f473a47dfbf2 470 PRINTS PR01050 Pyruvate kinase family signature 59 75 2.3E-77 T 17-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_09285 e487922cf9c84c45cd68f473a47dfbf2 470 PRINTS PR01050 Pyruvate kinase family signature 313 329 2.3E-77 T 17-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_09285 e487922cf9c84c45cd68f473a47dfbf2 470 PRINTS PR01050 Pyruvate kinase family signature 217 243 2.3E-77 T 17-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_09285 e487922cf9c84c45cd68f473a47dfbf2 470 Pfam PF00224 Pyruvate kinase, barrel domain 1 340 4.9E-150 T 17-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_09285 e487922cf9c84c45cd68f473a47dfbf2 470 SUPERFAMILY SSF51621 1 339 2.37E-100 T 17-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 VI35_09285 e487922cf9c84c45cd68f473a47dfbf2 470 Gene3D G3DSA:2.40.33.10 71 167 5.4E-146 T 17-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_09285 e487922cf9c84c45cd68f473a47dfbf2 470 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 2 469 9.6E-186 T 17-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_09285 e487922cf9c84c45cd68f473a47dfbf2 470 SUPERFAMILY SSF52935 323 469 2.88E-33 T 17-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_09285 e487922cf9c84c45cd68f473a47dfbf2 470 ProSitePatterns PS00110 Pyruvate kinase active site signature. 215 227 - T 17-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_09285 e487922cf9c84c45cd68f473a47dfbf2 470 Gene3D G3DSA:3.40.1380.20 336 467 1.2E-40 T 17-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_09285 e487922cf9c84c45cd68f473a47dfbf2 470 SUPERFAMILY SSF50800 70 167 7.67E-29 T 17-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily VI35_09285 e487922cf9c84c45cd68f473a47dfbf2 470 Gene3D G3DSA:3.20.20.60 4 332 5.4E-146 T 17-10-2018 VI35_09285 e487922cf9c84c45cd68f473a47dfbf2 470 Pfam PF02887 Pyruvate kinase, alpha/beta domain 356 468 2.3E-25 T 17-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_02585 97f56ada1e3993db8b70188886186075 293 SUPERFAMILY SSF81452 3 293 1.57E-75 T 17-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_02585 97f56ada1e3993db8b70188886186075 293 Gene3D G3DSA:1.10.287.70 1 75 3.1E-19 T 17-10-2018 VI35_02585 97f56ada1e3993db8b70188886186075 293 Pfam PF00510 Cytochrome c oxidase subunit III 8 110 2.0E-12 T 17-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_02585 97f56ada1e3993db8b70188886186075 293 Pfam PF00510 Cytochrome c oxidase subunit III 152 292 1.0E-38 T 17-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_02585 97f56ada1e3993db8b70188886186075 293 Gene3D G3DSA:1.20.120.80 77 293 6.8E-60 T 17-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_08110 3a7c3aadeead2a9e3f9e048cdabcc185 337 PIRSF PIRSF028757 3 336 1.6E-83 T 17-10-2018 IPR003507 Peptidase family S66 VI35_08110 3a7c3aadeead2a9e3f9e048cdabcc185 337 Gene3D G3DSA:3.50.30.60 168 336 5.2E-50 T 17-10-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily VI35_08110 3a7c3aadeead2a9e3f9e048cdabcc185 337 Pfam PF02016 LD-carboxypeptidase 15 321 2.0E-71 T 17-10-2018 IPR003507 Peptidase family S66 VI35_08110 3a7c3aadeead2a9e3f9e048cdabcc185 337 SUPERFAMILY SSF52317 2 157 9.15E-43 T 17-10-2018 IPR029062 Class I glutamine amidotransferase-like VI35_08110 3a7c3aadeead2a9e3f9e048cdabcc185 337 SUPERFAMILY SSF141986 174 326 4.05E-37 T 17-10-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily VI35_08110 3a7c3aadeead2a9e3f9e048cdabcc185 337 Gene3D G3DSA:3.40.50.10740 2 164 1.6E-56 T 17-10-2018 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal VI35_15825 51bcec44fe7ce443947021a811d09ead 680 Gene3D G3DSA:2.30.110.50 21 328 2.2E-93 T 17-10-2018 VI35_15825 51bcec44fe7ce443947021a811d09ead 680 Gene3D G3DSA:3.55.50.10 98 189 2.2E-93 T 17-10-2018 VI35_15825 51bcec44fe7ce443947021a811d09ead 680 Gene3D G3DSA:2.40.50.230 359 459 2.4E-41 T 17-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily VI35_15825 51bcec44fe7ce443947021a811d09ead 680 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 22 506 2.0E-147 T 17-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein VI35_15825 51bcec44fe7ce443947021a811d09ead 680 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 9 524 9.7E-206 T 17-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset VI35_15825 51bcec44fe7ce443947021a811d09ead 680 SUPERFAMILY SSF69279 14 185 5.5E-56 T 17-10-2018 VI35_15825 51bcec44fe7ce443947021a811d09ead 680 SUPERFAMILY SSF69349 445 626 2.2E-45 T 17-10-2018 VI35_15825 51bcec44fe7ce443947021a811d09ead 680 SUPERFAMILY SSF69255 367 454 1.41E-33 T 17-10-2018 VI35_15825 51bcec44fe7ce443947021a811d09ead 680 Pfam PF05954 Phage late control gene D protein (GPD) 30 325 4.5E-89 T 17-10-2018 VI35_15825 51bcec44fe7ce443947021a811d09ead 680 SUPERFAMILY SSF69279 197 359 6.97E-42 T 17-10-2018 VI35_15825 51bcec44fe7ce443947021a811d09ead 680 Gene3D G3DSA:3.30.1920.30 221 284 2.2E-93 T 17-10-2018 VI35_20425 a3bb34745e4a83f9534aff0de598095b 179 SUPERFAMILY SSF51161 6 176 9.84E-45 T 17-10-2018 IPR011004 Trimeric LpxA-like superfamily VI35_20425 a3bb34745e4a83f9534aff0de598095b 179 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 97 130 1.9E-8 T 17-10-2018 IPR001451 Hexapeptide repeat VI35_20425 a3bb34745e4a83f9534aff0de598095b 179 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 14 43 0.0019 T 17-10-2018 IPR001451 Hexapeptide repeat VI35_20425 a3bb34745e4a83f9534aff0de598095b 179 Gene3D G3DSA:2.160.10.10 4 179 1.3E-53 T 17-10-2018 VI35_02305 aac59ff5541dbee917cc6ec6d3d2109a 262 Gene3D G3DSA:2.60.440.10 24 262 4.6E-85 T 17-10-2018 IPR027462 Z ring-associated protein D, C-terminal VI35_02305 aac59ff5541dbee917cc6ec6d3d2109a 262 Hamap MF_01092 Cell division protein ZapD [zapD]. 22 262 31.003 T 17-10-2018 IPR009777 Cell division protein ZapD VI35_02305 aac59ff5541dbee917cc6ec6d3d2109a 262 Gene3D G3DSA:1.10.3900.10 31 197 4.6E-85 T 17-10-2018 VI35_02305 aac59ff5541dbee917cc6ec6d3d2109a 262 SUPERFAMILY SSF160950 23 262 3.4E-83 T 17-10-2018 IPR036268 ZapD domain superfamily VI35_02305 aac59ff5541dbee917cc6ec6d3d2109a 262 Pfam PF07072 Cell division protein 37 243 6.9E-76 T 17-10-2018 IPR009777 Cell division protein ZapD VI35_10915 179ad481391d17c3e02e76a5ad5f1f47 714 Pfam PF01170 Putative RNA methylase family UPF0020 165 384 3.8E-51 T 17-10-2018 IPR000241 Putative RNA methylase domain VI35_10915 179ad481391d17c3e02e76a5ad5f1f47 714 SMART SM00981 59 157 4.4E-21 T 17-10-2018 IPR004114 THUMP domain GO:0003723 VI35_10915 179ad481391d17c3e02e76a5ad5f1f47 714 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 440 666 4.9E-27 T 17-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 VI35_10915 179ad481391d17c3e02e76a5ad5f1f47 714 Gene3D G3DSA:3.30.750.80 400 491 2.2E-35 T 17-10-2018 VI35_10915 179ad481391d17c3e02e76a5ad5f1f47 714 PIRSF PIRSF037618 2 711 0.0 T 17-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 VI35_10915 179ad481391d17c3e02e76a5ad5f1f47 714 Pfam PF02926 THUMP domain 34 156 1.6E-11 T 17-10-2018 IPR004114 THUMP domain GO:0003723 VI35_10915 179ad481391d17c3e02e76a5ad5f1f47 714 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 315 321 - T 17-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 VI35_10915 179ad481391d17c3e02e76a5ad5f1f47 714 Gene3D G3DSA:3.40.50.150 492 710 3.2E-76 T 17-10-2018 VI35_10915 179ad481391d17c3e02e76a5ad5f1f47 714 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 197 208 - T 17-10-2018 IPR000241 Putative RNA methylase domain VI35_10915 179ad481391d17c3e02e76a5ad5f1f47 714 Gene3D G3DSA:3.40.50.150 172 381 2.8E-140 T 17-10-2018 VI35_10915 179ad481391d17c3e02e76a5ad5f1f47 714 Hamap MF_01858 Ribosomal RNA large subunit methyltransferase K/L [rlmL]. 7 710 33.309 T 17-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 VI35_10915 179ad481391d17c3e02e76a5ad5f1f47 714 SUPERFAMILY SSF53335 403 712 7.71E-70 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_10915 179ad481391d17c3e02e76a5ad5f1f47 714 Gene3D G3DSA:3.30.2130.30 8 257 2.8E-140 T 17-10-2018 VI35_10915 179ad481391d17c3e02e76a5ad5f1f47 714 SUPERFAMILY SSF53335 143 383 1.9E-33 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_18465 3b8c2d899bfa45336435ef793c739e56 874 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 874 199.048 T 17-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 VI35_18465 3b8c2d899bfa45336435ef793c739e56 874 Gene3D G3DSA:3.30.54.20 623 676 5.0E-50 T 17-10-2018 VI35_18465 3b8c2d899bfa45336435ef793c739e56 874 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 652 695 1.1E-18 T 17-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 VI35_18465 3b8c2d899bfa45336435ef793c739e56 874 SUPERFAMILY SSF55681 3 253 3.98E-107 T 17-10-2018 VI35_18465 3b8c2d899bfa45336435ef793c739e56 874 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 7 853 0.0 T 17-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 VI35_18465 3b8c2d899bfa45336435ef793c739e56 874 SMART SM00863 652 695 5.9E-23 T 17-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 VI35_18465 3b8c2d899bfa45336435ef793c739e56 874 SUPERFAMILY SSF101353 254 462 1.31E-56 T 17-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 VI35_18465 3b8c2d899bfa45336435ef793c739e56 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 304 317 1.5E-32 T 17-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 VI35_18465 3b8c2d899bfa45336435ef793c739e56 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 234 247 1.5E-32 T 17-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 VI35_18465 3b8c2d899bfa45336435ef793c739e56 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 76 87 1.5E-32 T 17-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 VI35_18465 3b8c2d899bfa45336435ef793c739e56 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 207 218 1.5E-32 T 17-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 VI35_18465 3b8c2d899bfa45336435ef793c739e56 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 280 296 1.5E-32 T 17-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 VI35_18465 3b8c2d899bfa45336435ef793c739e56 874 Gene3D G3DSA:3.30.980.10 562 696 5.0E-50 T 17-10-2018 VI35_18465 3b8c2d899bfa45336435ef793c739e56 874 Gene3D G3DSA:3.10.310.40 763 871 2.5E-34 T 17-10-2018 VI35_18465 3b8c2d899bfa45336435ef793c739e56 874 Pfam PF01411 tRNA synthetases class II (A) 7 554 2.8E-221 T 17-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 VI35_18465 3b8c2d899bfa45336435ef793c739e56 874 Pfam PF02272 DHHA1 domain 731 870 1.1E-30 T 17-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 VI35_18465 3b8c2d899bfa45336435ef793c739e56 874 Gene3D G3DSA:3.30.930.10 2 250 9.9E-121 T 17-10-2018 VI35_18465 3b8c2d899bfa45336435ef793c739e56 874 SUPERFAMILY SSF55186 551 707 4.32E-51 T 17-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 VI35_18465 3b8c2d899bfa45336435ef793c739e56 874 Gene3D G3DSA:2.40.30.130 461 551 1.1E-11 T 17-10-2018 VI35_18465 3b8c2d899bfa45336435ef793c739e56 874 SUPERFAMILY SSF50447 454 551 4.24E-18 T 17-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VI35_10340 842b392c851bb26f386e4befdb3e285a 456 Gene3D G3DSA:3.30.1330.90 10 158 2.8E-49 T 17-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 VI35_10340 842b392c851bb26f386e4befdb3e285a 456 SUPERFAMILY SSF143548 16 156 2.88E-45 T 17-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 VI35_10340 842b392c851bb26f386e4befdb3e285a 456 Pfam PF03313 Serine dehydratase alpha chain 183 447 6.3E-97 T 17-10-2018 IPR005130 Serine dehydratase-like, alpha subunit VI35_10340 842b392c851bb26f386e4befdb3e285a 456 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 2 450 3.3E-218 T 17-10-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 VI35_10340 842b392c851bb26f386e4befdb3e285a 456 Pfam PF03315 Serine dehydratase beta chain 3 154 9.0E-56 T 17-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 VI35_15720 bfcfb6c3aea6ad9afb75d397547defe2 210 TIGRFAM TIGR01939 nqrD: NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit 4 207 2.0E-102 T 17-10-2018 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D GO:0016655|GO:0055114 VI35_15720 bfcfb6c3aea6ad9afb75d397547defe2 210 Pfam PF02508 Rnf-Nqr subunit, membrane protein 8 195 8.0E-62 T 17-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 VI35_15720 bfcfb6c3aea6ad9afb75d397547defe2 210 PIRSF PIRSF006102 3 210 9.0E-67 T 17-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 VI35_15720 bfcfb6c3aea6ad9afb75d397547defe2 210 Hamap MF_00428 Na(+)-translocating NADH-quinone reductase subunit D [nqrD]. 2 207 35.937 T 17-10-2018 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D GO:0016655|GO:0055114 VI35_08540 016a26098d28f82f00f895798fc2113f 168 TIGRFAM TIGR03993 hydrog_HybE: [NiFe] hydrogenase assembly chaperone, HybE family 26 163 1.8E-44 T 17-10-2018 IPR023994 [NiFe]-hydrogenase assembly, chaperone, HybE VI35_08540 016a26098d28f82f00f895798fc2113f 168 ProDom PD008308 HUPJ HYDROGENASE EXPRESSION/FORMATION HYDROGENASE-2 HYBE COMPONENT OPERON ELECTRON METAL-BINDING IRON 28 166 5.0E-33 T 17-10-2018 IPR023994 [NiFe]-hydrogenase assembly, chaperone, HybE VI35_08540 016a26098d28f82f00f895798fc2113f 168 Pfam PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE 21 163 6.7E-39 T 17-10-2018 IPR023994 [NiFe]-hydrogenase assembly, chaperone, HybE VI35_08540 016a26098d28f82f00f895798fc2113f 168 Gene3D G3DSA:3.30.1460.40 11 145 1.2E-38 T 17-10-2018 IPR038530 [NiFe]-hydrogenase assembly, chaperone, HybE superfamily VI35_14060 8ab3fa70117bb623e3192ea4dce5d7a1 98 Gene3D G3DSA:1.10.260.40 10 87 1.8E-24 T 17-10-2018 VI35_14060 8ab3fa70117bb623e3192ea4dce5d7a1 98 Pfam PF13560 Helix-turn-helix domain 19 78 9.6E-9 T 17-10-2018 VI35_14060 8ab3fa70117bb623e3192ea4dce5d7a1 98 SMART SM00530 22 76 2.6E-5 T 17-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VI35_14060 8ab3fa70117bb623e3192ea4dce5d7a1 98 SUPERFAMILY SSF47413 16 81 1.36E-12 T 17-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VI35_06540 307b82f8b35a932002aeaa38ef8225b2 887 Gene3D G3DSA:3.20.20.80 331 821 8.7E-154 T 17-10-2018 VI35_06540 307b82f8b35a932002aeaa38ef8225b2 887 SUPERFAMILY SSF49384 28 200 3.56E-63 T 17-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 VI35_06540 307b82f8b35a932002aeaa38ef8225b2 887 SMART SM01081 36 198 9.6E-97 T 17-10-2018 IPR004866 Chitobiase/beta-hexosaminidases, N-terminal domain KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 VI35_06540 307b82f8b35a932002aeaa38ef8225b2 887 Gene3D G3DSA:3.30.379.10 210 330 2.6E-16 T 17-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 VI35_06540 307b82f8b35a932002aeaa38ef8225b2 887 Pfam PF03174 Chitobiase/beta-hexosaminidase C-terminal domain 809 883 5.8E-29 T 17-10-2018 IPR004867 Chitobiase C-terminal domain KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 VI35_06540 307b82f8b35a932002aeaa38ef8225b2 887 Pfam PF03173 Putative carbohydrate binding domain 37 196 4.3E-62 T 17-10-2018 IPR004866 Chitobiase/beta-hexosaminidases, N-terminal domain KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 VI35_06540 307b82f8b35a932002aeaa38ef8225b2 887 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 333 768 1.6E-112 T 17-10-2018 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 VI35_06540 307b82f8b35a932002aeaa38ef8225b2 887 SUPERFAMILY SSF55545 205 332 1.03E-19 T 17-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 VI35_06540 307b82f8b35a932002aeaa38ef8225b2 887 Gene3D G3DSA:2.60.40.290 27 167 2.6E-51 T 17-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 VI35_06540 307b82f8b35a932002aeaa38ef8225b2 887 PRINTS PR00738 Glycosyl hydrolase family 20 signature 433 450 8.9E-37 T 17-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VI35_06540 307b82f8b35a932002aeaa38ef8225b2 887 PRINTS PR00738 Glycosyl hydrolase family 20 signature 500 518 8.9E-37 T 17-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VI35_06540 307b82f8b35a932002aeaa38ef8225b2 887 PRINTS PR00738 Glycosyl hydrolase family 20 signature 327 344 8.9E-37 T 17-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VI35_06540 307b82f8b35a932002aeaa38ef8225b2 887 PRINTS PR00738 Glycosyl hydrolase family 20 signature 750 767 8.9E-37 T 17-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VI35_06540 307b82f8b35a932002aeaa38ef8225b2 887 PRINTS PR00738 Glycosyl hydrolase family 20 signature 294 314 8.9E-37 T 17-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VI35_06540 307b82f8b35a932002aeaa38ef8225b2 887 PRINTS PR00738 Glycosyl hydrolase family 20 signature 732 748 8.9E-37 T 17-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VI35_06540 307b82f8b35a932002aeaa38ef8225b2 887 PRINTS PR00738 Glycosyl hydrolase family 20 signature 356 377 8.9E-37 T 17-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VI35_06540 307b82f8b35a932002aeaa38ef8225b2 887 PRINTS PR00738 Glycosyl hydrolase family 20 signature 527 540 8.9E-37 T 17-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VI35_06540 307b82f8b35a932002aeaa38ef8225b2 887 SUPERFAMILY SSF81296 784 885 1.09E-36 T 17-10-2018 IPR014756 Immunoglobulin E-set VI35_06540 307b82f8b35a932002aeaa38ef8225b2 887 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 237 330 1.5E-11 T 17-10-2018 IPR015882 Beta-hexosaminidase, bacterial type, N-terminal VI35_06540 307b82f8b35a932002aeaa38ef8225b2 887 SUPERFAMILY SSF51445 333 772 2.32E-135 T 17-10-2018 IPR017853 Glycoside hydrolase superfamily VI35_06540 307b82f8b35a932002aeaa38ef8225b2 887 Gene3D G3DSA:2.60.40.10 823 886 1.2E-24 T 17-10-2018 IPR013783 Immunoglobulin-like fold VI35_11160 e96f2192f5bf43ee225cd23e8fae33b4 755 Gene3D G3DSA:3.20.70.20 76 739 1.0E-156 T 17-10-2018 VI35_11160 e96f2192f5bf43ee225cd23e8fae33b4 755 Pfam PF03477 ATP cone domain 4 90 1.2E-16 T 17-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 VI35_11160 e96f2192f5bf43ee225cd23e8fae33b4 755 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 597 619 - T 17-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VI35_11160 e96f2192f5bf43ee225cd23e8fae33b4 755 SUPERFAMILY SSF51998 220 738 2.93E-168 T 17-10-2018 VI35_11160 e96f2192f5bf43ee225cd23e8fae33b4 755 SUPERFAMILY SSF48168 8 219 2.49E-75 T 17-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VI35_11160 e96f2192f5bf43ee225cd23e8fae33b4 755 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 143 733 1.6E-176 T 17-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VI35_11160 e96f2192f5bf43ee225cd23e8fae33b4 755 Pfam PF02867 Ribonucleotide reductase, barrel domain 674 729 2.6E-7 T 17-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VI35_11160 e96f2192f5bf43ee225cd23e8fae33b4 755 Pfam PF02867 Ribonucleotide reductase, barrel domain 221 661 3.5E-112 T 17-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VI35_11160 e96f2192f5bf43ee225cd23e8fae33b4 755 PRINTS PR01183 Ribonucleotide reductase large chain signature 296 315 3.1E-38 T 17-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VI35_11160 e96f2192f5bf43ee225cd23e8fae33b4 755 PRINTS PR01183 Ribonucleotide reductase large chain signature 509 531 3.1E-38 T 17-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VI35_11160 e96f2192f5bf43ee225cd23e8fae33b4 755 PRINTS PR01183 Ribonucleotide reductase large chain signature 431 442 3.1E-38 T 17-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VI35_11160 e96f2192f5bf43ee225cd23e8fae33b4 755 PRINTS PR01183 Ribonucleotide reductase large chain signature 471 494 3.1E-38 T 17-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VI35_11160 e96f2192f5bf43ee225cd23e8fae33b4 755 PRINTS PR01183 Ribonucleotide reductase large chain signature 608 635 3.1E-38 T 17-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VI35_11160 e96f2192f5bf43ee225cd23e8fae33b4 755 PRINTS PR01183 Ribonucleotide reductase large chain signature 537 560 3.1E-38 T 17-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VI35_11160 e96f2192f5bf43ee225cd23e8fae33b4 755 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 140 217 7.4E-14 T 17-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VI35_13810 158cc7b31f7b46c7726be08a2717ee23 296 TIGRFAM TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase 2 289 1.4E-89 T 17-10-2018 IPR005913 dTDP-4-dehydrorhamnose reductase family Reactome: R-HSA-156581|Reactome: R-HSA-5689880 VI35_13810 158cc7b31f7b46c7726be08a2717ee23 296 Gene3D G3DSA:3.90.25.10 161 282 5.3E-98 T 17-10-2018 VI35_13810 158cc7b31f7b46c7726be08a2717ee23 296 Pfam PF04321 RmlD substrate binding domain 1 289 8.4E-92 T 17-10-2018 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581|Reactome: R-HSA-5689880 VI35_13810 158cc7b31f7b46c7726be08a2717ee23 296 Gene3D G3DSA:3.40.50.720 3 279 5.3E-98 T 17-10-2018 VI35_13810 158cc7b31f7b46c7726be08a2717ee23 296 SUPERFAMILY SSF51735 1 290 5.6E-93 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_14165 805a739bcb60e582e6c5a917653a9f09 323 Gene3D G3DSA:3.90.245.10 1 318 2.5E-104 T 17-10-2018 IPR036452 Ribonucleoside hydrolase-like VI35_14165 805a739bcb60e582e6c5a917653a9f09 323 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 3 302 1.7E-79 T 17-10-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain VI35_14165 805a739bcb60e582e6c5a917653a9f09 323 SUPERFAMILY SSF53590 3 309 1.44E-91 T 17-10-2018 IPR036452 Ribonucleoside hydrolase-like VI35_01430 98744c69fca3c035ab1047dd3ec6eee2 633 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 607 627 1.3E-5 T 17-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VI35_01430 98744c69fca3c035ab1047dd3ec6eee2 633 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 590 607 1.3E-5 T 17-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VI35_01430 98744c69fca3c035ab1047dd3ec6eee2 633 Pfam PF00989 PAS fold 203 308 5.3E-8 T 17-10-2018 IPR013767 PAS fold GO:0006355 VI35_01430 98744c69fca3c035ab1047dd3ec6eee2 633 Pfam PF00158 Sigma-54 interaction domain 328 488 8.8E-32 T 17-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VI35_01430 98744c69fca3c035ab1047dd3ec6eee2 633 Pfam PF02954 Bacterial regulatory protein, Fis family 583 622 4.3E-12 T 17-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VI35_01430 98744c69fca3c035ab1047dd3ec6eee2 633 SUPERFAMILY SSF52540 328 563 2.08E-40 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_01430 98744c69fca3c035ab1047dd3ec6eee2 633 SUPERFAMILY SSF55785 190 304 2.09E-8 T 17-10-2018 IPR035965 PAS domain superfamily VI35_01430 98744c69fca3c035ab1047dd3ec6eee2 633 Gene3D G3DSA:1.10.10.60 580 622 5.3E-13 T 17-10-2018 VI35_01430 98744c69fca3c035ab1047dd3ec6eee2 633 Gene3D G3DSA:1.10.8.60 494 569 2.4E-15 T 17-10-2018 VI35_01430 98744c69fca3c035ab1047dd3ec6eee2 633 SUPERFAMILY SSF46689 533 627 1.25E-10 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_01430 98744c69fca3c035ab1047dd3ec6eee2 633 Gene3D G3DSA:3.30.450.20 212 316 9.9E-14 T 17-10-2018 VI35_01430 98744c69fca3c035ab1047dd3ec6eee2 633 Gene3D G3DSA:3.30.450.40 6 189 1.1E-51 T 17-10-2018 IPR029016 GAF-like domain superfamily VI35_01430 98744c69fca3c035ab1047dd3ec6eee2 633 Gene3D G3DSA:3.40.50.300 317 493 1.5E-39 T 17-10-2018 VI35_01430 98744c69fca3c035ab1047dd3ec6eee2 633 SMART SM00091 202 268 0.0037 T 17-10-2018 IPR000014 PAS domain VI35_07785 829b216a6eea1be83c7837e597fc1aab 91 Pfam PF01381 Helix-turn-helix 23 69 5.1E-10 T 17-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VI35_07785 829b216a6eea1be83c7837e597fc1aab 91 SUPERFAMILY SSF47413 18 77 4.56E-11 T 17-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VI35_07785 829b216a6eea1be83c7837e597fc1aab 91 SMART SM00530 22 77 1.4E-7 T 17-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VI35_07785 829b216a6eea1be83c7837e597fc1aab 91 Gene3D G3DSA:1.10.260.40 15 90 1.9E-14 T 17-10-2018 VI35_04855 563d8c2e491a20f19a2974a1ec2b5291 444 SUPERFAMILY SSF53738 257 364 1.14E-30 T 17-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VI35_04855 563d8c2e491a20f19a2974a1ec2b5291 444 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 372 440 3.2E-13 T 17-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VI35_04855 563d8c2e491a20f19a2974a1ec2b5291 444 Gene3D G3DSA:3.40.120.10 256 338 1.5E-66 T 17-10-2018 VI35_04855 563d8c2e491a20f19a2974a1ec2b5291 444 SUPERFAMILY SSF55957 356 443 2.49E-21 T 17-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VI35_04855 563d8c2e491a20f19a2974a1ec2b5291 444 Gene3D G3DSA:3.40.120.10 2 153 2.8E-50 T 17-10-2018 VI35_04855 563d8c2e491a20f19a2974a1ec2b5291 444 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 2 443 48.16 T 17-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VI35_04855 563d8c2e491a20f19a2974a1ec2b5291 444 Gene3D G3DSA:3.40.120.10 173 361 1.5E-66 T 17-10-2018 VI35_04855 563d8c2e491a20f19a2974a1ec2b5291 444 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 3 135 2.1E-46 T 17-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VI35_04855 563d8c2e491a20f19a2974a1ec2b5291 444 Gene3D G3DSA:3.30.310.50 369 444 7.5E-26 T 17-10-2018 VI35_04855 563d8c2e491a20f19a2974a1ec2b5291 444 SUPERFAMILY SSF53738 155 255 6.67E-30 T 17-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VI35_04855 563d8c2e491a20f19a2974a1ec2b5291 444 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 6 441 4.1E-199 T 17-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VI35_04855 563d8c2e491a20f19a2974a1ec2b5291 444 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 95 104 - T 17-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VI35_04855 563d8c2e491a20f19a2974a1ec2b5291 444 SUPERFAMILY SSF53738 2 180 2.9E-49 T 17-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VI35_04855 563d8c2e491a20f19a2974a1ec2b5291 444 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 257 365 5.8E-33 T 17-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VI35_04855 563d8c2e491a20f19a2974a1ec2b5291 444 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 156 253 8.6E-20 T 17-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VI35_04855 563d8c2e491a20f19a2974a1ec2b5291 444 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 233 248 2.1E-14 T 17-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VI35_04855 563d8c2e491a20f19a2974a1ec2b5291 444 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 94 108 2.1E-14 T 17-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VI35_04855 563d8c2e491a20f19a2974a1ec2b5291 444 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 173 192 2.1E-14 T 17-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VI35_15305 3fe4294154cbe5aa2f45cc043414a53d 705 Pfam PF03477 ATP cone domain 4 89 3.0E-20 T 17-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 VI35_15305 3fe4294154cbe5aa2f45cc043414a53d 705 TIGRFAM TIGR02487 NrdD: anaerobic ribonucleoside-triphosphate reductase 115 704 7.4E-199 T 17-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 VI35_15305 3fe4294154cbe5aa2f45cc043414a53d 705 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 116 704 1.5E-177 T 17-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 VI35_15305 3fe4294154cbe5aa2f45cc043414a53d 705 SUPERFAMILY SSF51998 121 686 4.27E-193 T 17-10-2018 VI35_15305 3fe4294154cbe5aa2f45cc043414a53d 705 ProSitePatterns PS00850 Glycine radical domain signature. 675 683 - T 17-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site VI35_15305 3fe4294154cbe5aa2f45cc043414a53d 705 Gene3D G3DSA:3.20.70.20 121 686 1.1E-227 T 17-10-2018 VI35_08050 c00c5e49e638fde416b6ca421a971b40 286 PIRSF PIRSF028200 11 286 6.2E-59 T 17-10-2018 IPR016875 Uncharacterised conserved protein UCP028200 VI35_21220 faf19a9672c2fd9097707a163653d7c4 119 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 7 114 2.1E-29 T 17-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 VI35_21220 faf19a9672c2fd9097707a163653d7c4 119 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 57 71 - T 17-10-2018 IPR020539 Ribonuclease P, conserved site GO:0004526 VI35_21220 faf19a9672c2fd9097707a163653d7c4 119 SUPERFAMILY SSF54211 6 118 1.04E-30 T 17-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VI35_21220 faf19a9672c2fd9097707a163653d7c4 119 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 7 116 17.499 T 17-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 VI35_21220 faf19a9672c2fd9097707a163653d7c4 119 Gene3D G3DSA:3.30.230.10 3 119 1.1E-40 T 17-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VI35_21220 faf19a9672c2fd9097707a163653d7c4 119 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 17 106 2.0E-26 T 17-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 VI35_21220 faf19a9672c2fd9097707a163653d7c4 119 Pfam PF00825 Ribonuclease P 7 113 9.7E-33 T 17-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 VI35_02535 32ccc18f3f2e81196cb1032fdfa50d4e 377 Gene3D G3DSA:1.20.1420.30 84 355 1.9E-34 T 17-10-2018 VI35_02535 32ccc18f3f2e81196cb1032fdfa50d4e 377 Gene3D G3DSA:1.20.58.1130 57 268 1.9E-34 T 17-10-2018 VI35_02535 32ccc18f3f2e81196cb1032fdfa50d4e 377 Pfam PF01699 Sodium/calcium exchanger protein 240 346 5.4E-10 T 17-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 VI35_02535 32ccc18f3f2e81196cb1032fdfa50d4e 377 Pfam PF01699 Sodium/calcium exchanger protein 54 204 1.1E-12 T 17-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 VI35_06335 bb7c8e760ed8523d65c460d426259185 447 TIGRFAM TIGR00770 Dcu: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family 5 447 6.8E-158 T 17-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 VI35_06335 bb7c8e760ed8523d65c460d426259185 447 PIRSF PIRSF004539 1 447 2.1E-185 T 17-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 VI35_06335 bb7c8e760ed8523d65c460d426259185 447 Pfam PF03605 Anaerobic c4-dicarboxylate membrane transporter 5 379 2.0E-148 T 17-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 VI35_15320 78cd2011af2e073cc89e53a096eb90d0 376 SMART SM00771 238 368 1.4E-55 T 17-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 VI35_15320 78cd2011af2e073cc89e53a096eb90d0 376 Pfam PF04354 ZipA, C-terminal FtsZ-binding domain 241 366 2.8E-47 T 17-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 VI35_15320 78cd2011af2e073cc89e53a096eb90d0 376 SUPERFAMILY SSF64383 239 373 3.92E-46 T 17-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 VI35_15320 78cd2011af2e073cc89e53a096eb90d0 376 ProDom PD035754 CELL DIVISION MEMBRANE ZIPA SEPTATION TRANSMEMBRANE HOMOLOG INNER CYCLE ZIPA 241 364 8.0E-19 T 17-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 VI35_15320 78cd2011af2e073cc89e53a096eb90d0 376 TIGRFAM TIGR02205 septum_zipA: cell division protein ZipA 3 368 1.2E-59 T 17-10-2018 IPR011919 Cell division protein ZipA GO:0016021|GO:0090529 VI35_15320 78cd2011af2e073cc89e53a096eb90d0 376 Hamap MF_00509 Cell division protein ZipA [zipA]. 2 370 22.486 T 17-10-2018 IPR011919 Cell division protein ZipA GO:0016021|GO:0090529 VI35_15320 78cd2011af2e073cc89e53a096eb90d0 376 Gene3D G3DSA:3.30.1400.10 237 375 7.3E-48 T 17-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 VI35_13750 feeeaef740373b29587d0e5340aae647 366 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 158 364 2.4E-48 T 17-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 VI35_13750 feeeaef740373b29587d0e5340aae647 366 Pfam PF02817 e3 binding domain 112 146 1.2E-10 T 17-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 VI35_13750 feeeaef740373b29587d0e5340aae647 366 Gene3D G3DSA:4.10.320.10 110 146 8.1E-13 T 17-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 VI35_13750 feeeaef740373b29587d0e5340aae647 366 Gene3D G3DSA:3.30.559.10 147 366 1.0E-47 T 17-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 VI35_13750 feeeaef740373b29587d0e5340aae647 366 Pfam PF00364 Biotin-requiring enzyme 4 74 4.1E-19 T 17-10-2018 IPR000089 Biotin/lipoyl attachment VI35_13750 feeeaef740373b29587d0e5340aae647 366 SUPERFAMILY SSF51230 3 87 1.28E-23 T 17-10-2018 IPR011053 Single hybrid motif VI35_13750 feeeaef740373b29587d0e5340aae647 366 SUPERFAMILY SSF47005 105 149 1.83E-10 T 17-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 VI35_13750 feeeaef740373b29587d0e5340aae647 366 SUPERFAMILY SSF52777 160 363 4.89E-52 T 17-10-2018 VI35_13750 feeeaef740373b29587d0e5340aae647 366 Gene3D G3DSA:2.40.50.100 1 83 1.1E-21 T 17-10-2018 VI35_08860 45c4fcb2ad95dd997db9e79e1824e180 598 Pfam PF10088 Uncharacterised protein conserved in bacteria (DUF2326) 455 596 8.4E-33 T 17-10-2018 IPR018760 Protein of unknown function DUF2326 VI35_11490 1eba49f4f096bcae207e78cdf4475f12 168 Pfam PF13673 Acetyltransferase (GNAT) domain 46 146 2.6E-13 T 17-10-2018 IPR000182 GNAT domain VI35_11490 1eba49f4f096bcae207e78cdf4475f12 168 Gene3D G3DSA:3.40.630.30 2 168 5.8E-49 T 17-10-2018 VI35_11490 1eba49f4f096bcae207e78cdf4475f12 168 SUPERFAMILY SSF55729 14 168 9.61E-27 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_02570 d3afef1c1e40e9f4bc78429bec5c2e81 362 SUPERFAMILY SSF46626 243 346 7.93E-23 T 17-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VI35_02570 d3afef1c1e40e9f4bc78429bec5c2e81 362 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 164 212 - T 17-10-2018 IPR001505 Copper centre Cu(A) GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_02570 d3afef1c1e40e9f4bc78429bec5c2e81 362 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 255 331 5.2E-12 T 17-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_02570 d3afef1c1e40e9f4bc78429bec5c2e81 362 SUPERFAMILY SSF49503 88 287 2.43E-52 T 17-10-2018 IPR008972 Cupredoxin VI35_02570 d3afef1c1e40e9f4bc78429bec5c2e81 362 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 96 217 1.9E-36 T 17-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_02570 d3afef1c1e40e9f4bc78429bec5c2e81 362 Gene3D G3DSA:1.10.287.90 1 92 3.1E-24 T 17-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_02570 d3afef1c1e40e9f4bc78429bec5c2e81 362 TIGRFAM TIGR02866 CoxB: cytochrome c oxidase, subunit II 9 228 1.5E-56 T 17-10-2018 IPR014222 Cytochrome c oxidase, subunit II GO:0016021|GO:0016491 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_02570 d3afef1c1e40e9f4bc78429bec5c2e81 362 PRINTS PR01166 Cytochrome c oxidase subunit II signature 139 160 1.4E-37 T 17-10-2018 VI35_02570 d3afef1c1e40e9f4bc78429bec5c2e81 362 PRINTS PR01166 Cytochrome c oxidase subunit II signature 92 111 1.4E-37 T 17-10-2018 VI35_02570 d3afef1c1e40e9f4bc78429bec5c2e81 362 PRINTS PR01166 Cytochrome c oxidase subunit II signature 70 90 1.4E-37 T 17-10-2018 VI35_02570 d3afef1c1e40e9f4bc78429bec5c2e81 362 PRINTS PR01166 Cytochrome c oxidase subunit II signature 163 183 1.4E-37 T 17-10-2018 VI35_02570 d3afef1c1e40e9f4bc78429bec5c2e81 362 PRINTS PR01166 Cytochrome c oxidase subunit II signature 183 200 1.4E-37 T 17-10-2018 VI35_02570 d3afef1c1e40e9f4bc78429bec5c2e81 362 PRINTS PR01166 Cytochrome c oxidase subunit II signature 201 218 1.4E-37 T 17-10-2018 VI35_02570 d3afef1c1e40e9f4bc78429bec5c2e81 362 PRINTS PR01166 Cytochrome c oxidase subunit II signature 58 70 1.4E-37 T 17-10-2018 VI35_02570 d3afef1c1e40e9f4bc78429bec5c2e81 362 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 3 81 9.3E-15 T 17-10-2018 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_02570 d3afef1c1e40e9f4bc78429bec5c2e81 362 Gene3D G3DSA:2.60.40.420 93 232 1.5E-52 T 17-10-2018 IPR008972 Cupredoxin VI35_02570 d3afef1c1e40e9f4bc78429bec5c2e81 362 SUPERFAMILY SSF81464 3 90 2.78E-26 T 17-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_02570 d3afef1c1e40e9f4bc78429bec5c2e81 362 Gene3D G3DSA:1.10.760.10 236 361 2.3E-28 T 17-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VI35_04170 ce0a833fa9f5d39f8bfa88851dbb4401 1186 SUPERFAMILY SSF90123 641 932 4.71E-43 T 17-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VI35_04170 ce0a833fa9f5d39f8bfa88851dbb4401 1186 Pfam PF00664 ABC transporter transmembrane region 81 346 1.2E-19 T 17-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 VI35_04170 ce0a833fa9f5d39f8bfa88851dbb4401 1186 Pfam PF00664 ABC transporter transmembrane region 669 882 3.7E-18 T 17-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 VI35_04170 ce0a833fa9f5d39f8bfa88851dbb4401 1186 Gene3D G3DSA:3.40.50.300 376 604 1.2E-62 T 17-10-2018 VI35_04170 ce0a833fa9f5d39f8bfa88851dbb4401 1186 Gene3D G3DSA:1.20.1560.10 59 375 6.2E-24 T 17-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VI35_04170 ce0a833fa9f5d39f8bfa88851dbb4401 1186 SUPERFAMILY SSF52540 939 1174 1.92E-48 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_04170 ce0a833fa9f5d39f8bfa88851dbb4401 1186 Gene3D G3DSA:1.20.1560.10 639 931 1.5E-29 T 17-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VI35_04170 ce0a833fa9f5d39f8bfa88851dbb4401 1186 Gene3D G3DSA:3.40.50.300 932 1178 3.0E-58 T 17-10-2018 VI35_04170 ce0a833fa9f5d39f8bfa88851dbb4401 1186 ProSitePatterns PS00211 ABC transporters family signature. 512 526 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_04170 ce0a833fa9f5d39f8bfa88851dbb4401 1186 Pfam PF00005 ABC transporter 963 1106 2.4E-22 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_04170 ce0a833fa9f5d39f8bfa88851dbb4401 1186 SUPERFAMILY SSF52540 384 593 3.55E-49 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_04170 ce0a833fa9f5d39f8bfa88851dbb4401 1186 SMART SM00382 414 586 8.1E-9 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_04170 ce0a833fa9f5d39f8bfa88851dbb4401 1186 SMART SM00382 972 1152 2.0E-7 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_04170 ce0a833fa9f5d39f8bfa88851dbb4401 1186 SUPERFAMILY SSF90123 67 375 1.7E-33 T 17-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VI35_04170 ce0a833fa9f5d39f8bfa88851dbb4401 1186 Pfam PF00005 ABC transporter 406 539 6.4E-19 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_17605 f600d8283381a4ccb01889f0c6b9bbb6 333 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 147 155 - T 17-10-2018 IPR034408 Sulphate/thiosulphate-binding site GO:1901681 VI35_17605 f600d8283381a4ccb01889f0c6b9bbb6 333 Pfam PF13531 Bacterial extracellular solute-binding protein 43 282 2.3E-44 T 17-10-2018 VI35_17605 f600d8283381a4ccb01889f0c6b9bbb6 333 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 18 328 2.5E-143 T 17-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 VI35_17605 f600d8283381a4ccb01889f0c6b9bbb6 333 Gene3D G3DSA:3.40.190.10 29 297 2.6E-131 T 17-10-2018 VI35_17605 f600d8283381a4ccb01889f0c6b9bbb6 333 SUPERFAMILY SSF53850 22 330 1.62E-86 T 17-10-2018 VI35_17605 f600d8283381a4ccb01889f0c6b9bbb6 333 ProSitePatterns PS00401 Prokaryotic sulfate-binding proteins signature 1. 50 62 - T 17-10-2018 IPR000957 Sulphate/thiosulphate-binding, conserved site VI35_17605 f600d8283381a4ccb01889f0c6b9bbb6 333 Gene3D G3DSA:3.40.190.10 116 327 2.6E-131 T 17-10-2018 VI35_10615 235aed2fb509ca8a7ff98c63ad943c1c 314 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 92 110 - T 17-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 VI35_10615 235aed2fb509ca8a7ff98c63ad943c1c 314 Pfam PF01207 Dihydrouridine synthase (Dus) 4 309 7.9E-79 T 17-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 VI35_10615 235aed2fb509ca8a7ff98c63ad943c1c 314 Gene3D G3DSA:3.20.20.70 1 240 9.5E-78 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_10615 235aed2fb509ca8a7ff98c63ad943c1c 314 PIRSF PIRSF006621 1 314 1.0E-81 T 17-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 VI35_10615 235aed2fb509ca8a7ff98c63ad943c1c 314 SUPERFAMILY SSF51395 1 309 8.06E-74 T 17-10-2018 VI35_10615 235aed2fb509ca8a7ff98c63ad943c1c 314 Hamap MF_02043 tRNA-dihydrouridine(16) synthase [dusC]. 8 309 53.324 T 17-10-2018 IPR032886 tRNA-dihydrouridine(16) synthase GO:0002943|GO:0017150 VI35_10615 235aed2fb509ca8a7ff98c63ad943c1c 314 Gene3D G3DSA:1.20.225.30 242 310 2.6E-21 T 17-10-2018 VI35_18575 d5dd320a7e8dd2f503a162ad3033569e 111 Gene3D G3DSA:3.40.1440.10 5 96 1.4E-27 T 17-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 VI35_18575 d5dd320a7e8dd2f503a162ad3033569e 111 SUPERFAMILY SSF82771 10 81 1.07E-11 T 17-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 VI35_18575 d5dd320a7e8dd2f503a162ad3033569e 111 SMART SM00465 10 89 0.0028 T 17-10-2018 IPR000305 GIY-YIG endonuclease VI35_18575 d5dd320a7e8dd2f503a162ad3033569e 111 Pfam PF01541 GIY-YIG catalytic domain 11 80 4.7E-14 T 17-10-2018 IPR000305 GIY-YIG endonuclease VI35_18875 e94d62cb47c52c219c039ed13cdfe3ca 286 TIGRFAM TIGR01929 menB: naphthoate synthase 23 282 3.3E-145 T 17-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 VI35_18875 e94d62cb47c52c219c039ed13cdfe3ca 286 Gene3D G3DSA:3.90.226.10 3 223 1.4E-84 T 17-10-2018 VI35_18875 e94d62cb47c52c219c039ed13cdfe3ca 286 SUPERFAMILY SSF52096 17 281 1.09E-77 T 17-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VI35_18875 e94d62cb47c52c219c039ed13cdfe3ca 286 Gene3D G3DSA:1.10.12.10 224 274 3.1E-31 T 17-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal VI35_18875 e94d62cb47c52c219c039ed13cdfe3ca 286 Hamap MF_01934 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 16 285 55.522 T 17-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 VI35_18875 e94d62cb47c52c219c039ed13cdfe3ca 286 Pfam PF00378 Enoyl-CoA hydratase/isomerase 32 280 3.0E-79 T 17-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 VI35_18875 e94d62cb47c52c219c039ed13cdfe3ca 286 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 124 144 - T 17-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 VI35_10175 46fe1d274f65b9115d4027d7f0c40a22 331 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 14 304 1.6E-64 T 17-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 VI35_10175 46fe1d274f65b9115d4027d7f0c40a22 331 Hamap MF_01944 Lipid A biosynthesis myristoyltransferase [lpxM]. 5 310 45.833 T 17-10-2018 IPR011921 Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016747 KEGG: 00540+2.3.1.243 VI35_10175 46fe1d274f65b9115d4027d7f0c40a22 331 PIRSF PIRSF026649 10 314 1.4E-106 T 17-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 VI35_02915 c1208345b19273063b26f9ba3e4a409e 186 Pfam PF00293 NUDIX domain 47 144 5.8E-12 T 17-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 VI35_02915 c1208345b19273063b26f9ba3e4a409e 186 SUPERFAMILY SSF55811 4 182 1.33E-37 T 17-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VI35_02915 c1208345b19273063b26f9ba3e4a409e 186 Gene3D G3DSA:3.90.79.10 8 186 6.8E-46 T 17-10-2018 VI35_00315 7176062434f9f8b982af4f5b798d937c 393 Gene3D G3DSA:1.20.1250.20 2 384 9.4E-39 T 17-10-2018 VI35_00315 7176062434f9f8b982af4f5b798d937c 393 SUPERFAMILY SSF103473 5 382 3.53E-45 T 17-10-2018 IPR036259 MFS transporter superfamily VI35_00315 7176062434f9f8b982af4f5b798d937c 393 Pfam PF07690 Major Facilitator Superfamily 18 326 2.7E-24 T 17-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VI35_04840 a9bdb2b0e8aa684c7a1d2b49676220b0 209 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 15 208 27.841 T 17-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 VI35_04840 a9bdb2b0e8aa684c7a1d2b49676220b0 209 Gene3D G3DSA:3.40.50.150 30 208 2.0E-58 T 17-10-2018 VI35_04840 a9bdb2b0e8aa684c7a1d2b49676220b0 209 Pfam PF01728 FtsJ-like methyltransferase 31 207 1.7E-55 T 17-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 VI35_04840 a9bdb2b0e8aa684c7a1d2b49676220b0 209 SUPERFAMILY SSF53335 31 208 2.66E-43 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_04840 a9bdb2b0e8aa684c7a1d2b49676220b0 209 PIRSF PIRSF005461 1 209 4.7E-81 T 17-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 VI35_19540 2b65597df33ff741d4d5c2ebe652200c 234 Gene3D G3DSA:1.10.10.10 2 69 5.9E-25 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_19540 2b65597df33ff741d4d5c2ebe652200c 234 TIGRFAM TIGR02018 his_ut_repres: histidine utilization repressor 5 231 4.5E-85 T 17-10-2018 IPR010248 Histidine utilization repressor GO:0003677|GO:0006547|GO:0045892 VI35_19540 2b65597df33ff741d4d5c2ebe652200c 234 Pfam PF00392 Bacterial regulatory proteins, gntR family 5 68 2.8E-21 T 17-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VI35_19540 2b65597df33ff741d4d5c2ebe652200c 234 SUPERFAMILY SSF64288 56 229 2.04E-42 T 17-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily VI35_19540 2b65597df33ff741d4d5c2ebe652200c 234 Gene3D G3DSA:3.40.1410.10 86 222 1.5E-33 T 17-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily VI35_19540 2b65597df33ff741d4d5c2ebe652200c 234 Pfam PF07702 UTRA domain 89 226 6.5E-34 T 17-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 VI35_19540 2b65597df33ff741d4d5c2ebe652200c 234 SUPERFAMILY SSF46785 4 72 3.67E-22 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_19540 2b65597df33ff741d4d5c2ebe652200c 234 SMART SM00345 9 68 3.4E-21 T 17-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VI35_19540 2b65597df33ff741d4d5c2ebe652200c 234 SMART SM00866 89 226 5.0E-34 T 17-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 VI35_19540 2b65597df33ff741d4d5c2ebe652200c 234 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 58 1.6E-8 T 17-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VI35_19540 2b65597df33ff741d4d5c2ebe652200c 234 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 28 42 1.6E-8 T 17-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VI35_12365 b99d8da22cedefe37f5e31e6d739bc90 170 Gene3D G3DSA:3.30.1050.10 46 137 2.1E-8 T 17-10-2018 IPR036527 SCP2 sterol-binding domain superfamily VI35_12365 b99d8da22cedefe37f5e31e6d739bc90 170 SUPERFAMILY SSF55718 45 139 6.36E-22 T 17-10-2018 IPR036527 SCP2 sterol-binding domain superfamily VI35_12365 b99d8da22cedefe37f5e31e6d739bc90 170 Pfam PF02036 SCP-2 sterol transfer family 42 134 5.3E-20 T 17-10-2018 IPR003033 SCP2 sterol-binding domain VI35_12365 b99d8da22cedefe37f5e31e6d739bc90 170 PIRSF PIRSF025550 1 170 1.0E-65 T 17-10-2018 IPR016830 Uncharacterised conserved protein UCP025550, lipid carrier protein, YhbT VI35_04885 358e5e1b8a6ce8fb524bf1195a536851 500 Pfam PF13184 NusA-like KH domain 233 300 6.1E-25 T 17-10-2018 IPR025249 KH domain, NusA-like GO:0003723 VI35_04885 358e5e1b8a6ce8fb524bf1195a536851 500 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 413 28.426 T 17-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 VI35_04885 358e5e1b8a6ce8fb524bf1195a536851 500 Gene3D G3DSA:3.30.300.20 202 280 9.3E-29 T 17-10-2018 IPR015946 K homology domain-like, alpha/beta VI35_04885 358e5e1b8a6ce8fb524bf1195a536851 500 SUPERFAMILY SSF47794 432 495 5.49E-16 T 17-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 VI35_04885 358e5e1b8a6ce8fb524bf1195a536851 500 Gene3D G3DSA:1.10.150.20 434 493 1.0E-23 T 17-10-2018 VI35_04885 358e5e1b8a6ce8fb524bf1195a536851 500 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 5 345 3.0E-125 T 17-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 VI35_04885 358e5e1b8a6ce8fb524bf1195a536851 500 SUPERFAMILY SSF50249 134 202 7.05E-17 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_04885 358e5e1b8a6ce8fb524bf1195a536851 500 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 368 417 2.2E-18 T 17-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication VI35_04885 358e5e1b8a6ce8fb524bf1195a536851 500 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 444 492 7.7E-17 T 17-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication VI35_04885 358e5e1b8a6ce8fb524bf1195a536851 500 Gene3D G3DSA:3.30.300.20 281 349 3.9E-24 T 17-10-2018 IPR015946 K homology domain-like, alpha/beta VI35_04885 358e5e1b8a6ce8fb524bf1195a536851 500 Gene3D G3DSA:3.30.1480.10 1 132 1.5E-43 T 17-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 VI35_04885 358e5e1b8a6ce8fb524bf1195a536851 500 SUPERFAMILY SSF54814 204 281 1.18E-27 T 17-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 VI35_04885 358e5e1b8a6ce8fb524bf1195a536851 500 SUPERFAMILY SSF47794 359 419 8.95E-16 T 17-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 VI35_04885 358e5e1b8a6ce8fb524bf1195a536851 500 Gene3D G3DSA:1.10.150.20 357 424 2.7E-25 T 17-10-2018 VI35_04885 358e5e1b8a6ce8fb524bf1195a536851 500 SUPERFAMILY SSF54814 282 346 2.53E-15 T 17-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 VI35_04885 358e5e1b8a6ce8fb524bf1195a536851 500 SUPERFAMILY SSF69705 1 129 6.15E-41 T 17-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 VI35_04885 358e5e1b8a6ce8fb524bf1195a536851 500 Gene3D G3DSA:2.40.50.140 138 201 5.7E-18 T 17-10-2018 VI35_04885 358e5e1b8a6ce8fb524bf1195a536851 500 Pfam PF14520 Helix-hairpin-helix domain 435 489 6.0E-10 T 17-10-2018 VI35_04885 358e5e1b8a6ce8fb524bf1195a536851 500 SMART SM00316 136 203 2.8E-7 T 17-10-2018 IPR022967 RNA-binding domain, S1 VI35_04885 358e5e1b8a6ce8fb524bf1195a536851 500 Pfam PF08529 NusA N-terminal domain 4 126 6.4E-37 T 17-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 VI35_12460 4317fcfc0b9afe038166f01270c6c28c 129 Gene3D G3DSA:2.40.50.100 2 129 1.4E-52 T 17-10-2018 VI35_12460 4317fcfc0b9afe038166f01270c6c28c 129 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 49 78 - T 17-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 VI35_12460 4317fcfc0b9afe038166f01270c6c28c 129 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 5 127 41.4 T 17-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 VI35_12460 4317fcfc0b9afe038166f01270c6c28c 129 SUPERFAMILY SSF51230 4 128 1.21E-45 T 17-10-2018 IPR011053 Single hybrid motif VI35_12460 4317fcfc0b9afe038166f01270c6c28c 129 Pfam PF01597 Glycine cleavage H-protein 8 128 5.3E-47 T 17-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate VI35_12460 4317fcfc0b9afe038166f01270c6c28c 129 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 4 129 1.5E-54 T 17-10-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 VI35_12720 1d803e008342d738ba6a11a426f098d8 517 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 304 483 2.6E-39 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_12720 1d803e008342d738ba6a11a426f098d8 517 SMART SM00397 260 327 1.7 T 17-10-2018 IPR000727 Target SNARE coiled-coil homology domain VI35_12720 1d803e008342d738ba6a11a426f098d8 517 SMART SM00397 428 495 1.6 T 17-10-2018 IPR000727 Target SNARE coiled-coil homology domain VI35_12720 1d803e008342d738ba6a11a426f098d8 517 SUPERFAMILY SSF55785 21 115 1.48E-29 T 17-10-2018 IPR035965 PAS domain superfamily VI35_12720 1d803e008342d738ba6a11a426f098d8 517 SMART SM00086 81 122 0.0085 T 17-10-2018 IPR001610 PAC motif VI35_12720 1d803e008342d738ba6a11a426f098d8 517 SUPERFAMILY SSF58104 230 516 3.92E-67 T 17-10-2018 VI35_12720 1d803e008342d738ba6a11a426f098d8 517 SMART SM00283 256 517 6.2E-53 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_12720 1d803e008342d738ba6a11a426f098d8 517 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 23 114 2.3E-16 T 17-10-2018 IPR000014 PAS domain VI35_12720 1d803e008342d738ba6a11a426f098d8 517 Gene3D G3DSA:3.30.450.20 15 137 4.3E-28 T 17-10-2018 VI35_12720 1d803e008342d738ba6a11a426f098d8 517 Gene3D G3DSA:1.10.287.950 196 517 5.7E-60 T 17-10-2018 VI35_12720 1d803e008342d738ba6a11a426f098d8 517 Pfam PF08447 PAS fold 32 115 3.6E-18 T 17-10-2018 IPR013655 PAS fold-3 GO:0005515 VI35_12720 1d803e008342d738ba6a11a426f098d8 517 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 270 299 4.4E-6 T 17-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VI35_12720 1d803e008342d738ba6a11a426f098d8 517 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 383 412 4.4E-6 T 17-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VI35_09465 1a213b8472e31815b5c8cd651ca59683 397 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 167 395 1.4E-82 T 17-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 VI35_09465 1a213b8472e31815b5c8cd651ca59683 397 Gene3D G3DSA:4.10.320.10 93 140 1.6E-17 T 17-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 VI35_09465 1a213b8472e31815b5c8cd651ca59683 397 SUPERFAMILY SSF52777 168 396 2.76E-91 T 17-10-2018 VI35_09465 1a213b8472e31815b5c8cd651ca59683 397 Gene3D G3DSA:3.30.559.10 165 397 2.0E-99 T 17-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 VI35_09465 1a213b8472e31815b5c8cd651ca59683 397 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 17-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 VI35_09465 1a213b8472e31815b5c8cd651ca59683 397 Pfam PF00364 Biotin-requiring enzyme 4 76 4.7E-19 T 17-10-2018 IPR000089 Biotin/lipoyl attachment VI35_09465 1a213b8472e31815b5c8cd651ca59683 397 Gene3D G3DSA:2.40.50.100 1 77 5.5E-23 T 17-10-2018 VI35_09465 1a213b8472e31815b5c8cd651ca59683 397 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 3 397 1.5E-181 T 17-10-2018 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 VI35_09465 1a213b8472e31815b5c8cd651ca59683 397 SUPERFAMILY SSF51230 1 90 9.03E-25 T 17-10-2018 IPR011053 Single hybrid motif VI35_09465 1a213b8472e31815b5c8cd651ca59683 397 SUPERFAMILY SSF47005 98 140 7.85E-12 T 17-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 VI35_09465 1a213b8472e31815b5c8cd651ca59683 397 Pfam PF02817 e3 binding domain 102 135 6.5E-14 T 17-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 VI35_04765 588402b097d61a66de3470f8bfa356d8 137 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 5 133 3.0E-44 T 17-10-2018 IPR011605 NusB antitermination factor GO:0006353 VI35_04765 588402b097d61a66de3470f8bfa356d8 137 Gene3D G3DSA:1.10.940.10 1 137 3.5E-49 T 17-10-2018 IPR035926 NusB-like superfamily VI35_04765 588402b097d61a66de3470f8bfa356d8 137 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 4 135 22.663 T 17-10-2018 IPR011605 NusB antitermination factor GO:0006353 VI35_04765 588402b097d61a66de3470f8bfa356d8 137 Pfam PF01029 NusB family 7 132 9.6E-36 T 17-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 VI35_04765 588402b097d61a66de3470f8bfa356d8 137 SUPERFAMILY SSF48013 3 134 1.7E-43 T 17-10-2018 IPR035926 NusB-like superfamily VI35_16360 4e114b9dc4de7472a70767d0c931c9ad 266 SUPERFAMILY SSF53335 4 199 1.75E-21 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_16360 4e114b9dc4de7472a70767d0c931c9ad 266 Pfam PF08241 Methyltransferase domain 88 146 1.3E-4 T 17-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 VI35_16360 4e114b9dc4de7472a70767d0c931c9ad 266 Gene3D G3DSA:3.40.50.150 1 265 4.5E-42 T 17-10-2018 VI35_16360 4e114b9dc4de7472a70767d0c931c9ad 266 PIRSF PIRSF018249 1 265 4.9E-48 T 17-10-2018 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted GO:0008168 VI35_18400 2e5b198bea4afe91f3d5f98e05fdaa3b 151 Gene3D G3DSA:3.40.50.10110 1 139 2.8E-46 T 17-10-2018 IPR036768 DNA polymerase III subunit chi superfamily VI35_18400 2e5b198bea4afe91f3d5f98e05fdaa3b 151 Pfam PF04364 DNA polymerase III chi subunit, HolC 1 135 1.6E-38 T 17-10-2018 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 VI35_18400 2e5b198bea4afe91f3d5f98e05fdaa3b 151 SUPERFAMILY SSF102400 1 140 1.7E-37 T 17-10-2018 IPR036768 DNA polymerase III subunit chi superfamily VI35_01670 ed63d157b9805a0cd6592fc4ae2979d7 189 Pfam PF00436 Single-strand binding protein family 6 107 8.5E-43 T 17-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 VI35_01670 ed63d157b9805a0cd6592fc4ae2979d7 189 SUPERFAMILY SSF50249 4 189 4.46E-62 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_01670 ed63d157b9805a0cd6592fc4ae2979d7 189 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 3 189 5.8E-63 T 17-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 VI35_01670 ed63d157b9805a0cd6592fc4ae2979d7 189 Gene3D G3DSA:2.40.50.140 1 116 5.5E-50 T 17-10-2018 VI35_01670 ed63d157b9805a0cd6592fc4ae2979d7 189 Hamap MF_00984 Single-stranded DNA-binding protein. 6 118 38.764 T 17-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 VI35_02100 8584f8f928af76f2bb4e6e0af2a03783 218 PRINTS PR01008 Flagellar L-ring protein signature 131 146 1.9E-23 T 17-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 VI35_02100 8584f8f928af76f2bb4e6e0af2a03783 218 PRINTS PR01008 Flagellar L-ring protein signature 63 75 1.9E-23 T 17-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 VI35_02100 8584f8f928af76f2bb4e6e0af2a03783 218 PRINTS PR01008 Flagellar L-ring protein signature 178 192 1.9E-23 T 17-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 VI35_02100 8584f8f928af76f2bb4e6e0af2a03783 218 PRINTS PR01008 Flagellar L-ring protein signature 157 173 1.9E-23 T 17-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 VI35_02100 8584f8f928af76f2bb4e6e0af2a03783 218 PRINTS PR01008 Flagellar L-ring protein signature 194 208 1.9E-23 T 17-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 VI35_02100 8584f8f928af76f2bb4e6e0af2a03783 218 Pfam PF02107 Flagellar L-ring protein 42 215 1.2E-60 T 17-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 VI35_02100 8584f8f928af76f2bb4e6e0af2a03783 218 Hamap MF_00415 Flagellar L-ring protein [flgH]. 3 215 25.355 T 17-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 VI35_06775 6841f9168c1ac80a5986dd3f7538e1ae 393 SMART SM00897 33 226 3.9E-34 T 17-10-2018 IPR013702 FIST domain, N-terminal VI35_06775 6841f9168c1ac80a5986dd3f7538e1ae 393 Pfam PF10442 FIST C domain 228 372 6.0E-13 T 17-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 VI35_06775 6841f9168c1ac80a5986dd3f7538e1ae 393 Pfam PF08495 FIST N domain 35 225 1.6E-29 T 17-10-2018 IPR013702 FIST domain, N-terminal VI35_06775 6841f9168c1ac80a5986dd3f7538e1ae 393 SMART SM01204 227 373 1.3E-16 T 17-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 VI35_01855 b736d9db9a41ff0c9304e0cfdc379cf1 634 SUPERFAMILY SSF63520 293 391 4.58E-17 T 17-10-2018 IPR036634 PRD domain superfamily GO:0006355 VI35_01855 b736d9db9a41ff0c9304e0cfdc379cf1 634 Pfam PF05043 Mga helix-turn-helix domain 99 166 1.4E-8 T 17-10-2018 IPR007737 Mga helix-turn-helix domain VI35_01855 b736d9db9a41ff0c9304e0cfdc379cf1 634 Pfam PF08279 HTH domain 8 64 2.2E-11 T 17-10-2018 IPR013196 Helix-turn-helix, type 11 VI35_01855 b736d9db9a41ff0c9304e0cfdc379cf1 634 Pfam PF00874 PRD domain 303 386 1.1E-13 T 17-10-2018 IPR011608 PRD domain GO:0006355 VI35_01855 b736d9db9a41ff0c9304e0cfdc379cf1 634 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 512 627 2.5E-14 T 17-10-2018 IPR002178 PTS EIIA type-2 domain VI35_01855 b736d9db9a41ff0c9304e0cfdc379cf1 634 SUPERFAMILY SSF46785 4 65 3.81E-6 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_01855 b736d9db9a41ff0c9304e0cfdc379cf1 634 Gene3D G3DSA:3.40.930.10 498 631 1.0E-12 T 17-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VI35_01855 b736d9db9a41ff0c9304e0cfdc379cf1 634 SUPERFAMILY SSF55804 494 629 4.01E-21 T 17-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VI35_01855 b736d9db9a41ff0c9304e0cfdc379cf1 634 Gene3D G3DSA:1.10.10.10 3 66 1.8E-10 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_01855 b736d9db9a41ff0c9304e0cfdc379cf1 634 Gene3D G3DSA:1.10.1790.10 292 389 2.2E-12 T 17-10-2018 VI35_19435 d9b4bad96bc0c539b603b2beac0b8ef5 155 Gene3D G3DSA:3.30.700.10 7 155 4.9E-13 T 17-10-2018 VI35_19435 d9b4bad96bc0c539b603b2beac0b8ef5 155 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 26 3.1E-9 T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_19435 d9b4bad96bc0c539b603b2beac0b8ef5 155 SUPERFAMILY SSF54523 7 131 6.28E-15 T 17-10-2018 VI35_19435 d9b4bad96bc0c539b603b2beac0b8ef5 155 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 26 7.7E-8 T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_19435 d9b4bad96bc0c539b603b2beac0b8ef5 155 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_18340 a6616f36b7f587b09fb6c23b0676ad10 424 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 201 418 9.7E-74 T 17-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 VI35_18340 a6616f36b7f587b09fb6c23b0676ad10 424 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 8 81 1.3E-23 T 17-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 VI35_18340 a6616f36b7f587b09fb6c23b0676ad10 424 Pfam PF07670 Nucleoside recognition 99 195 2.1E-8 T 17-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 VI35_18340 a6616f36b7f587b09fb6c23b0676ad10 424 TIGRFAM TIGR00804 nupC: nucleoside transporter, NupC family 5 418 1.7E-150 T 17-10-2018 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial GO:0005337|GO:0016020|GO:1901642 Reactome: R-HSA-83936 VI35_05460 b459705ad3829a43a544cc49b9c16578 454 Pfam PF07690 Major Facilitator Superfamily 11 390 6.2E-51 T 17-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VI35_05460 b459705ad3829a43a544cc49b9c16578 454 PRINTS PR01036 Tetracycline resistance protein TetB signature 381 400 8.2E-5 T 17-10-2018 VI35_05460 b459705ad3829a43a544cc49b9c16578 454 PRINTS PR01036 Tetracycline resistance protein TetB signature 99 119 8.2E-5 T 17-10-2018 VI35_05460 b459705ad3829a43a544cc49b9c16578 454 PRINTS PR01036 Tetracycline resistance protein TetB signature 129 153 8.2E-5 T 17-10-2018 VI35_05460 b459705ad3829a43a544cc49b9c16578 454 SUPERFAMILY SSF103473 7 447 1.83E-62 T 17-10-2018 IPR036259 MFS transporter superfamily VI35_05460 b459705ad3829a43a544cc49b9c16578 454 Gene3D G3DSA:1.20.1250.20 242 449 1.1E-19 T 17-10-2018 VI35_05460 b459705ad3829a43a544cc49b9c16578 454 Gene3D G3DSA:1.20.1720.10 8 215 1.9E-50 T 17-10-2018 VI35_16780 1458f114820351c81c66de468a98dcd2 167 SMART SM00014 57 162 7.5E-17 T 17-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase VI35_16780 1458f114820351c81c66de468a98dcd2 167 SUPERFAMILY SSF48317 4 164 3.66E-36 T 17-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily VI35_16780 1458f114820351c81c66de468a98dcd2 167 Pfam PF01569 PAP2 superfamily 63 166 1.0E-20 T 17-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase VI35_16780 1458f114820351c81c66de468a98dcd2 167 Gene3D G3DSA:1.20.144.10 87 166 1.9E-17 T 17-10-2018 VI35_20850 0b74a17a61df214832e0aa2f777b7a2f 367 Gene3D G3DSA:3.40.50.2300 142 270 7.2E-121 T 17-10-2018 VI35_20850 0b74a17a61df214832e0aa2f777b7a2f 367 Gene3D G3DSA:3.40.50.2300 25 341 7.2E-121 T 17-10-2018 VI35_20850 0b74a17a61df214832e0aa2f777b7a2f 367 Pfam PF13458 Periplasmic binding protein 23 361 3.0E-67 T 17-10-2018 IPR028081 Leucine-binding protein domain VI35_20850 0b74a17a61df214832e0aa2f777b7a2f 367 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 275 288 2.3E-49 T 17-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 VI35_20850 0b74a17a61df214832e0aa2f777b7a2f 367 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 327 342 2.3E-49 T 17-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 VI35_20850 0b74a17a61df214832e0aa2f777b7a2f 367 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 24 40 2.3E-49 T 17-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 VI35_20850 0b74a17a61df214832e0aa2f777b7a2f 367 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 252 270 2.3E-49 T 17-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 VI35_20850 0b74a17a61df214832e0aa2f777b7a2f 367 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 86 96 2.3E-49 T 17-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 VI35_20850 0b74a17a61df214832e0aa2f777b7a2f 367 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 46 62 2.3E-49 T 17-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 VI35_20850 0b74a17a61df214832e0aa2f777b7a2f 367 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 65 83 2.3E-49 T 17-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 VI35_20850 0b74a17a61df214832e0aa2f777b7a2f 367 SUPERFAMILY SSF53822 22 363 2.88E-95 T 17-10-2018 IPR028082 Periplasmic binding protein-like I VI35_17865 4e8078f54aaa37fd621f92417064eb56 953 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 58 69 - T 17-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_17865 4e8078f54aaa37fd621f92417064eb56 953 SUPERFAMILY SSF47323 668 944 7.1E-77 T 17-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_17865 4e8078f54aaa37fd621f92417064eb56 953 Gene3D G3DSA:3.90.740.10 195 413 2.9E-232 T 17-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 VI35_17865 4e8078f54aaa37fd621f92417064eb56 953 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 28 656 4.5E-217 T 17-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_17865 4e8078f54aaa37fd621f92417064eb56 953 Gene3D G3DSA:1.10.730.20 656 945 5.5E-88 T 17-10-2018 VI35_17865 4e8078f54aaa37fd621f92417064eb56 953 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 2 944 21.443 T 17-10-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 VI35_17865 4e8078f54aaa37fd621f92417064eb56 953 SUPERFAMILY SSF50677 204 408 5.13E-52 T 17-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 VI35_17865 4e8078f54aaa37fd621f92417064eb56 953 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 241 264 1.1E-33 T 17-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 VI35_17865 4e8078f54aaa37fd621f92417064eb56 953 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 406 421 1.1E-33 T 17-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 VI35_17865 4e8078f54aaa37fd621f92417064eb56 953 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 51 62 1.1E-33 T 17-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 VI35_17865 4e8078f54aaa37fd621f92417064eb56 953 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 542 555 1.1E-33 T 17-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 VI35_17865 4e8078f54aaa37fd621f92417064eb56 953 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 577 586 1.1E-33 T 17-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 VI35_17865 4e8078f54aaa37fd621f92417064eb56 953 SUPERFAMILY SSF52374 3 663 4.28E-135 T 17-10-2018 VI35_17865 4e8078f54aaa37fd621f92417064eb56 953 Pfam PF08264 Anticodon-binding domain of tRNA 701 855 4.4E-27 T 17-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 VI35_17865 4e8078f54aaa37fd621f92417064eb56 953 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 14 859 6.4E-293 T 17-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 VI35_17865 4e8078f54aaa37fd621f92417064eb56 953 Pfam PF06827 Zinc finger found in FPG and IleRS 915 941 2.3E-6 T 17-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 VI35_17865 4e8078f54aaa37fd621f92417064eb56 953 Gene3D G3DSA:3.40.50.620 25 645 2.9E-232 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_09840 d6a5690177f518dbab6fd6cde2d555c8 155 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 75 8.8E-9 T 17-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 VI35_09840 d6a5690177f518dbab6fd6cde2d555c8 155 SMART SM00855 2 115 1.2E-5 T 17-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 VI35_09840 d6a5690177f518dbab6fd6cde2d555c8 155 SUPERFAMILY SSF53254 1 145 3.37E-21 T 17-10-2018 IPR029033 Histidine phosphatase superfamily VI35_09840 d6a5690177f518dbab6fd6cde2d555c8 155 TIGRFAM TIGR00249 sixA: phosphohistidine phosphatase SixA 1 150 3.0E-35 T 17-10-2018 IPR004449 Phosphohistidine phosphatase SixA GO:0005737|GO:0006464|GO:0101006 VI35_09840 d6a5690177f518dbab6fd6cde2d555c8 155 Gene3D G3DSA:3.40.50.1240 1 155 2.1E-35 T 17-10-2018 IPR029033 Histidine phosphatase superfamily VI35_11120 03582880a372520ddb567ddc10eac546 182 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 18 87 2.3E-29 T 17-10-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 VI35_11120 03582880a372520ddb567ddc10eac546 182 Gene3D G3DSA:3.30.110.10 87 182 3.3E-38 T 17-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 VI35_11120 03582880a372520ddb567ddc10eac546 182 SUPERFAMILY SSF54364 16 89 6.28E-28 T 17-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 VI35_11120 03582880a372520ddb567ddc10eac546 182 SUPERFAMILY SSF55200 93 181 5.23E-35 T 17-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 VI35_11120 03582880a372520ddb567ddc10eac546 182 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 94 179 3.9E-38 T 17-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 VI35_11120 03582880a372520ddb567ddc10eac546 182 ProSitePatterns PS00938 Initiation factor 3 signature. 69 82 - T 17-10-2018 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 VI35_11120 03582880a372520ddb567ddc10eac546 182 Gene3D G3DSA:3.10.20.80 13 86 3.4E-31 T 17-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 VI35_11120 03582880a372520ddb567ddc10eac546 182 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 12 181 30.995 T 17-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 VI35_11120 03582880a372520ddb567ddc10eac546 182 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 18 181 2.1E-72 T 17-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 VI35_03520 42e4fdb8d20cc557d193e8c03efdf56f 302 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 29 257 2.4E-65 T 17-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 VI35_03520 42e4fdb8d20cc557d193e8c03efdf56f 302 SUPERFAMILY SSF52402 6 210 7.64E-75 T 17-10-2018 VI35_03520 42e4fdb8d20cc557d193e8c03efdf56f 302 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 9 302 8.0E-161 T 17-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 VI35_03520 42e4fdb8d20cc557d193e8c03efdf56f 302 Hamap MF_00064 Sulfate adenylyltransferase subunit 2 [cysD]. 4 302 57.71 T 17-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 VI35_03520 42e4fdb8d20cc557d193e8c03efdf56f 302 Gene3D G3DSA:3.40.50.620 7 212 6.0E-67 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_03520 42e4fdb8d20cc557d193e8c03efdf56f 302 PIRSF PIRSF002936 1 302 1.8E-155 T 17-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 VI35_05190 47fc4cc2e99916b8558e296422d476c1 270 Gene3D G3DSA:3.40.190.10 28 263 2.9E-82 T 17-10-2018 VI35_05190 47fc4cc2e99916b8558e296422d476c1 270 Gene3D G3DSA:3.40.190.10 107 215 2.9E-82 T 17-10-2018 VI35_05190 47fc4cc2e99916b8558e296422d476c1 270 PIRSF PIRSF002854 3 267 1.0E-92 T 17-10-2018 IPR004872 Lipoprotein NlpA family VI35_05190 47fc4cc2e99916b8558e296422d476c1 270 Pfam PF03180 NLPA lipoprotein 28 265 1.2E-74 T 17-10-2018 IPR004872 Lipoprotein NlpA family VI35_05190 47fc4cc2e99916b8558e296422d476c1 270 SUPERFAMILY SSF53850 28 266 2.95E-60 T 17-10-2018 VI35_01340 abd62f0a2e56bc4aef1741dd87a808f3 118 Gene3D G3DSA:3.40.1260.10 1 118 1.4E-33 T 17-10-2018 IPR027396 DsrEFH-like VI35_01340 abd62f0a2e56bc4aef1741dd87a808f3 118 SUPERFAMILY SSF75169 1 118 5.89E-33 T 17-10-2018 IPR027396 DsrEFH-like VI35_01340 abd62f0a2e56bc4aef1741dd87a808f3 118 Pfam PF02635 DsrE/DsrF-like family 4 107 6.4E-23 T 17-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein VI35_01340 abd62f0a2e56bc4aef1741dd87a808f3 118 TIGRFAM TIGR03010 sulf_tusC_dsrF: sulfur relay protein TusC/DsrF 3 118 4.7E-41 T 17-10-2018 IPR017462 Sulphur relay, TusC/DsrF VI35_01535 bde6998a6231aecc1bf4bbffe53b56bb 298 Gene3D G3DSA:1.10.3720.10 14 287 1.6E-38 T 17-10-2018 IPR035906 MetI-like superfamily VI35_01535 bde6998a6231aecc1bf4bbffe53b56bb 298 SUPERFAMILY SSF161098 20 290 1.7E-45 T 17-10-2018 IPR035906 MetI-like superfamily VI35_01535 bde6998a6231aecc1bf4bbffe53b56bb 298 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 280 6.5E-13 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_06530 b617d2f08459a209a19ddbbfed2661ac 266 ProSitePatterns PS01161 Glucosamine/galactosamine-6-phosphate isomerases signature. 125 143 - T 17-10-2018 IPR018321 Glucosamine-6-phosphate isomerase, conserved site GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 VI35_06530 b617d2f08459a209a19ddbbfed2661ac 266 Gene3D G3DSA:3.40.50.1360 1 266 3.2E-114 T 17-10-2018 VI35_06530 b617d2f08459a209a19ddbbfed2661ac 266 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 17 227 1.0E-18 T 17-10-2018 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 VI35_06530 b617d2f08459a209a19ddbbfed2661ac 266 TIGRFAM TIGR00502 nagB: glucosamine-6-phosphate deaminase 1 259 1.0E-137 T 17-10-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 VI35_06530 b617d2f08459a209a19ddbbfed2661ac 266 SUPERFAMILY SSF100950 1 264 3.56E-105 T 17-10-2018 IPR037171 NagB/RpiA transferase-like VI35_06530 b617d2f08459a209a19ddbbfed2661ac 266 Hamap MF_01241 Glucosamine-6-phosphate deaminase [nagB]. 1 247 40.857 T 17-10-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 VI35_12060 a917383fc16a0492d08f22e9000f909e 197 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 2 197 45.344 T 17-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 VI35_12060 a917383fc16a0492d08f22e9000f909e 197 SUPERFAMILY SSF142695 3 173 1.7E-67 T 17-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 VI35_12060 a917383fc16a0492d08f22e9000f909e 197 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 7 194 6.3E-82 T 17-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 VI35_12060 a917383fc16a0492d08f22e9000f909e 197 Gene3D G3DSA:3.40.50.10990 3 174 1.1E-74 T 17-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 VI35_12060 a917383fc16a0492d08f22e9000f909e 197 Pfam PF00925 GTP cyclohydrolase II 8 171 4.4E-69 T 17-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 VI35_15100 cc5899d553c932762167e5148d44cc66 382 SUPERFAMILY SSF50621 244 374 1.17E-33 T 17-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 VI35_15100 cc5899d553c932762167e5148d44cc66 382 PRINTS PR01182 Ornithine decarboxylase signature 119 141 1.4E-21 T 17-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 VI35_15100 cc5899d553c932762167e5148d44cc66 382 PRINTS PR01182 Ornithine decarboxylase signature 45 72 1.4E-21 T 17-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 VI35_15100 cc5899d553c932762167e5148d44cc66 382 PRINTS PR01182 Ornithine decarboxylase signature 19 43 1.4E-21 T 17-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 VI35_15100 cc5899d553c932762167e5148d44cc66 382 PRINTS PR01182 Ornithine decarboxylase signature 316 326 1.4E-21 T 17-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 VI35_15100 cc5899d553c932762167e5148d44cc66 382 PRINTS PR01182 Ornithine decarboxylase signature 336 349 1.4E-21 T 17-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 VI35_15100 cc5899d553c932762167e5148d44cc66 382 PRINTS PR01182 Ornithine decarboxylase signature 89 113 1.4E-21 T 17-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 VI35_15100 cc5899d553c932762167e5148d44cc66 382 PRINTS PR01182 Ornithine decarboxylase signature 285 298 1.4E-21 T 17-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 VI35_15100 cc5899d553c932762167e5148d44cc66 382 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 261 349 1.2E-14 T 17-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 VI35_15100 cc5899d553c932762167e5148d44cc66 382 Gene3D G3DSA:2.40.37.10 14 363 1.5E-108 T 17-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 VI35_15100 cc5899d553c932762167e5148d44cc66 382 Gene3D G3DSA:3.20.20.10 26 262 1.5E-108 T 17-10-2018 IPR029066 PLP-binding barrel VI35_15100 cc5899d553c932762167e5148d44cc66 382 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 27 260 4.2E-50 T 17-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 VI35_15100 cc5899d553c932762167e5148d44cc66 382 SUPERFAMILY SSF51419 25 262 2.06E-60 T 17-10-2018 IPR029066 PLP-binding barrel VI35_15100 cc5899d553c932762167e5148d44cc66 382 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 349 362 4.9E-20 T 17-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VI35_15100 cc5899d553c932762167e5148d44cc66 382 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 250 269 4.9E-20 T 17-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VI35_15100 cc5899d553c932762167e5148d44cc66 382 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 47 65 4.9E-20 T 17-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VI35_15100 cc5899d553c932762167e5148d44cc66 382 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 169 182 4.9E-20 T 17-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VI35_15100 cc5899d553c932762167e5148d44cc66 382 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 67 79 4.9E-20 T 17-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VI35_15100 cc5899d553c932762167e5148d44cc66 382 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 203 220 - T 17-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site VI35_09345 cd039406bd7d79a70262793c61cd8e97 558 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 293 503 2.8E-40 T 17-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 VI35_09345 cd039406bd7d79a70262793c61cd8e97 558 PIRSF PIRSF000538 233 555 1.1E-33 T 17-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 VI35_09345 cd039406bd7d79a70262793c61cd8e97 558 PIRSF PIRSF000538 3 198 9.3E-7 T 17-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 VI35_09345 cd039406bd7d79a70262793c61cd8e97 558 SUPERFAMILY SSF53067 6 286 9.5E-22 T 17-10-2018 VI35_09345 cd039406bd7d79a70262793c61cd8e97 558 SUPERFAMILY SSF53067 288 551 5.83E-46 T 17-10-2018 VI35_09345 cd039406bd7d79a70262793c61cd8e97 558 TIGRFAM TIGR01234 L-ribulokinase: ribulokinase 5 549 5.3E-217 T 17-10-2018 IPR005929 Ribulokinase GO:0005524|GO:0008741|GO:0019569 KEGG: 00040+2.7.1.16 VI35_09345 cd039406bd7d79a70262793c61cd8e97 558 Gene3D G3DSA:3.30.420.460 338 539 8.1E-117 T 17-10-2018 VI35_09345 cd039406bd7d79a70262793c61cd8e97 558 Gene3D G3DSA:3.30.420.40 6 528 8.1E-117 T 17-10-2018 VI35_09345 cd039406bd7d79a70262793c61cd8e97 558 Hamap MF_00520 Ribulokinase [araB]. 3 557 50.03 T 17-10-2018 IPR005929 Ribulokinase GO:0005524|GO:0008741|GO:0019569 KEGG: 00040+2.7.1.16 VI35_04120 9a55560f0f125d6b38ff29ff2a8a3b3d 306 Pfam PF04960 Glutaminase 22 306 8.2E-111 T 17-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 VI35_04120 9a55560f0f125d6b38ff29ff2a8a3b3d 306 Hamap MF_00313 Glutaminase [glsA]. 4 306 46.781 T 17-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 VI35_04120 9a55560f0f125d6b38ff29ff2a8a3b3d 306 Gene3D G3DSA:3.40.710.10 4 306 2.9E-107 T 17-10-2018 VI35_04120 9a55560f0f125d6b38ff29ff2a8a3b3d 306 TIGRFAM TIGR03814 Gln_ase: glutaminase A 9 306 2.6E-127 T 17-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 VI35_04120 9a55560f0f125d6b38ff29ff2a8a3b3d 306 SUPERFAMILY SSF56601 7 306 2.11E-110 T 17-10-2018 IPR012338 Beta-lactamase/transpeptidase-like VI35_17075 df91a7d9dfcf8e8f5cec7720ff3d0362 537 SMART SM00382 45 188 5.7E-5 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_17075 df91a7d9dfcf8e8f5cec7720ff3d0362 537 Gene3D G3DSA:1.10.8.300 228 292 3.5E-27 T 17-10-2018 VI35_17075 df91a7d9dfcf8e8f5cec7720ff3d0362 537 Pfam PF07728 AAA domain (dynein-related subfamily) 48 178 3.2E-21 T 17-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 VI35_17075 df91a7d9dfcf8e8f5cec7720ff3d0362 537 Gene3D G3DSA:2.40.128.430 338 465 3.9E-8 T 17-10-2018 VI35_17075 df91a7d9dfcf8e8f5cec7720ff3d0362 537 Gene3D G3DSA:1.20.58.1510 312 510 3.9E-8 T 17-10-2018 VI35_17075 df91a7d9dfcf8e8f5cec7720ff3d0362 537 Pfam PF12592 Protein of unknown function (DUF3763) 476 519 5.8E-13 T 17-10-2018 IPR022547 ATPase, RavA, C-terminal GO:0042626 VI35_17075 df91a7d9dfcf8e8f5cec7720ff3d0362 537 SUPERFAMILY SSF52540 29 307 2.34E-18 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_17075 df91a7d9dfcf8e8f5cec7720ff3d0362 537 Gene3D G3DSA:3.40.50.300 8 227 1.1E-56 T 17-10-2018 VI35_11855 d687590bcc0d8d51efb2aeb34873a5e4 757 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 5 755 36.621 T 17-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 VI35_11855 d687590bcc0d8d51efb2aeb34873a5e4 757 SUPERFAMILY SSF51726 393 754 6.54E-118 T 17-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 VI35_11855 d687590bcc0d8d51efb2aeb34873a5e4 757 Gene3D G3DSA:3.20.20.210 9 521 0.0 T 17-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 VI35_11855 d687590bcc0d8d51efb2aeb34873a5e4 757 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 7 314 2.1E-120 T 17-10-2018 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 VI35_11855 d687590bcc0d8d51efb2aeb34873a5e4 757 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 10 755 0.0 T 17-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 VI35_11855 d687590bcc0d8d51efb2aeb34873a5e4 757 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 428 750 1.0E-151 T 17-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 VI35_11855 d687590bcc0d8d51efb2aeb34873a5e4 757 SUPERFAMILY SSF51726 7 384 2.88E-109 T 17-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 VI35_11855 d687590bcc0d8d51efb2aeb34873a5e4 757 PIRSF PIRSF000382 4 757 0.0 T 17-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 VI35_11855 d687590bcc0d8d51efb2aeb34873a5e4 757 Gene3D G3DSA:3.20.20.210 386 753 0.0 T 17-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 VI35_13220 ed691113a08fdd01bdf86e395538cd9a 240 SMART SM00062 16 240 0.0013 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_13220 ed691113a08fdd01bdf86e395538cd9a 240 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 22 238 1.4E-23 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_13220 ed691113a08fdd01bdf86e395538cd9a 240 Gene3D G3DSA:3.40.190.10 101 197 4.4E-28 T 17-10-2018 VI35_13220 ed691113a08fdd01bdf86e395538cd9a 240 SUPERFAMILY SSF53850 17 239 2.06E-36 T 17-10-2018 VI35_13220 ed691113a08fdd01bdf86e395538cd9a 240 Gene3D G3DSA:3.40.190.10 22 236 4.4E-28 T 17-10-2018 VI35_03275 4b5a3a96947bf3b4642423f399813525 326 PIRSF PIRSF005427 1 323 3.2E-107 T 17-10-2018 IPR005588 MucB/RseB VI35_03275 4b5a3a96947bf3b4642423f399813525 326 Gene3D G3DSA:2.50.20.10 24 208 8.8E-46 T 17-10-2018 VI35_03275 4b5a3a96947bf3b4642423f399813525 326 Pfam PF17188 MucB/RseB C-terminal domain 219 317 4.9E-29 T 17-10-2018 IPR033436 MucB/RseB, C-terminal VI35_03275 4b5a3a96947bf3b4642423f399813525 326 Pfam PF03888 MucB/RseB N-terminal domain 25 191 7.4E-51 T 17-10-2018 IPR033434 MucB/RseB, N-terminal VI35_03275 4b5a3a96947bf3b4642423f399813525 326 Gene3D G3DSA:3.30.200.100 220 320 1.2E-28 T 17-10-2018 IPR038484 MucB/RseB, C-terminal domain superfamily VI35_17855 008e589f4be94e73187d4afd209bb9ea 150 Gene3D G3DSA:3.10.50.40 14 141 1.3E-40 T 17-10-2018 VI35_17855 008e589f4be94e73187d4afd209bb9ea 150 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 7 141 3.9E-12 T 17-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain VI35_17855 008e589f4be94e73187d4afd209bb9ea 150 Gene3D G3DSA:2.40.10.330 73 129 1.3E-40 T 17-10-2018 VI35_17855 008e589f4be94e73187d4afd209bb9ea 150 SUPERFAMILY SSF54534 5 143 1.65E-32 T 17-10-2018 VI35_01760 15726ee2f172ff01fa0312ccf7769ec6 181 Gene3D G3DSA:1.10.60.30 109 180 1.3E-27 T 17-10-2018 VI35_01760 15726ee2f172ff01fa0312ccf7769ec6 181 Pfam PF04751 Protein of unknown function (DUF615) 22 174 9.2E-54 T 17-10-2018 IPR006839 Ribosome-associated, YjgA VI35_01760 15726ee2f172ff01fa0312ccf7769ec6 181 SUPERFAMILY SSF158710 32 177 3.14E-48 T 17-10-2018 IPR023153 PSPTO4464-like domain superfamily VI35_01760 15726ee2f172ff01fa0312ccf7769ec6 181 Hamap MF_00765 UPF0307 protein YjgA [yjgA]. 10 178 22.016 T 17-10-2018 IPR006839 Ribosome-associated, YjgA VI35_01760 15726ee2f172ff01fa0312ccf7769ec6 181 PIRSF PIRSF016183 5 180 5.9E-61 T 17-10-2018 IPR006839 Ribosome-associated, YjgA VI35_01760 15726ee2f172ff01fa0312ccf7769ec6 181 Gene3D G3DSA:1.10.60.30 31 108 3.7E-21 T 17-10-2018 VI35_08725 8b60621421d87c418f10464760654b03 349 Pfam PF01032 FecCD transport family 38 343 1.3E-68 T 17-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 VI35_08725 8b60621421d87c418f10464760654b03 349 SUPERFAMILY SSF81345 21 343 1.07E-58 T 17-10-2018 IPR037294 ABC transporter, BtuC-like VI35_08725 8b60621421d87c418f10464760654b03 349 Gene3D G3DSA:1.10.3470.10 24 349 2.1E-68 T 17-10-2018 IPR037294 ABC transporter, BtuC-like VI35_18740 1b2397ae0b76652d520aa01e390eeb62 475 Gene3D G3DSA:3.40.50.620 318 474 1.0E-38 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_18740 1b2397ae0b76652d520aa01e390eeb62 475 SUPERFAMILY SSF53613 11 309 6.24E-60 T 17-10-2018 IPR029056 Ribokinase-like VI35_18740 1b2397ae0b76652d520aa01e390eeb62 475 Gene3D G3DSA:3.40.1190.20 2 310 6.5E-111 T 17-10-2018 IPR029056 Ribokinase-like VI35_18740 1b2397ae0b76652d520aa01e390eeb62 475 TIGRFAM TIGR02199 rfaE_dom_II: bifunctional protein RfaE, domain II 332 472 3.4E-62 T 17-10-2018 IPR011914 RfaE bifunctional protein, domain II GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 VI35_18740 1b2397ae0b76652d520aa01e390eeb62 475 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 342 408 7.9E-17 T 17-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 VI35_18740 1b2397ae0b76652d520aa01e390eeb62 475 Pfam PF00294 pfkB family carbohydrate kinase 11 305 3.8E-48 T 17-10-2018 IPR011611 Carbohydrate kinase PfkB VI35_18740 1b2397ae0b76652d520aa01e390eeb62 475 Pfam PF01467 Cytidylyltransferase-like 345 468 1.6E-14 T 17-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 VI35_18740 1b2397ae0b76652d520aa01e390eeb62 475 Hamap MF_01603 Bifunctional protein HldE [hldE]. 4 474 43.307 T 17-10-2018 IPR023030 Bifunctional protein HldE GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 VI35_18740 1b2397ae0b76652d520aa01e390eeb62 475 SUPERFAMILY SSF52374 340 471 1.44E-22 T 17-10-2018 VI35_18740 1b2397ae0b76652d520aa01e390eeb62 475 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 51 74 - T 17-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 VI35_18740 1b2397ae0b76652d520aa01e390eeb62 475 TIGRFAM TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I 5 312 2.3E-125 T 17-10-2018 IPR011913 RfaE bifunctional protein, domain I GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 VI35_06885 77eb91dbdd583588a95ed315d01e95e1 341 SUPERFAMILY SSF53067 163 321 1.94E-21 T 17-10-2018 VI35_06885 77eb91dbdd583588a95ed315d01e95e1 341 Gene3D G3DSA:3.30.420.40 166 292 2.9E-86 T 17-10-2018 VI35_06885 77eb91dbdd583588a95ed315d01e95e1 341 Gene3D G3DSA:3.30.420.40 2 165 2.9E-86 T 17-10-2018 VI35_06885 77eb91dbdd583588a95ed315d01e95e1 341 Pfam PF06406 StbA protein 2 318 1.0E-100 T 17-10-2018 IPR009440 Plasmid segregation protein ParM/StbA VI35_06885 77eb91dbdd583588a95ed315d01e95e1 341 SUPERFAMILY SSF53067 2 156 1.81E-46 T 17-10-2018 VI35_09175 7af7b59d4a735107efe46249f5b4cdb9 371 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 63 260 4.4E-11 T 17-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VI35_09175 7af7b59d4a735107efe46249f5b4cdb9 371 Gene3D G3DSA:2.40.50.100 60 206 4.1E-56 T 17-10-2018 VI35_09175 7af7b59d4a735107efe46249f5b4cdb9 371 Gene3D G3DSA:2.40.420.20 281 353 4.1E-56 T 17-10-2018 VI35_09175 7af7b59d4a735107efe46249f5b4cdb9 371 SUPERFAMILY SSF111369 51 258 4.45E-18 T 17-10-2018 VI35_09175 7af7b59d4a735107efe46249f5b4cdb9 371 Gene3D G3DSA:2.40.30.170 48 280 4.1E-56 T 17-10-2018 VI35_09175 7af7b59d4a735107efe46249f5b4cdb9 371 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 47 357 5.3E-51 T 17-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VI35_09175 7af7b59d4a735107efe46249f5b4cdb9 371 Gene3D G3DSA:1.10.287.470 94 166 4.1E-56 T 17-10-2018 VI35_01765 a61e7a59d8c4b91105608d89b0f8f49d 447 Pfam PF01523 Putative modulator of DNA gyrase 33 322 4.7E-54 T 17-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 VI35_01765 a61e7a59d8c4b91105608d89b0f8f49d 447 Gene3D G3DSA:3.30.2290.10 3 233 2.7E-80 T 17-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal VI35_01765 a61e7a59d8c4b91105608d89b0f8f49d 447 SUPERFAMILY SSF111283 14 446 1.31E-123 T 17-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 VI35_19180 a870df7e9c45c86f2fbb93f2d580aaa1 212 Pfam PF06055 Exopolysaccharide synthesis, ExoD 13 194 4.2E-54 T 17-10-2018 IPR010331 Exopolysaccharide synthesis, ExoD VI35_19180 a870df7e9c45c86f2fbb93f2d580aaa1 212 PIRSF PIRSF033239 1 209 1.8E-55 T 17-10-2018 IPR010331 Exopolysaccharide synthesis, ExoD VI35_00990 8c4b3260929ec168826396723ede3e1c 336 Pfam PF02653 Branched-chain amino acid transport system / permease component 41 325 3.4E-47 T 17-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 VI35_08955 70393ebb1497961653c586ee36a0c170 213 Pfam PF02586 SOS response associated peptidase (SRAP) 35 184 2.1E-25 T 17-10-2018 IPR003738 SOS response associated peptidase (SRAP) VI35_08955 70393ebb1497961653c586ee36a0c170 213 Gene3D G3DSA:3.90.1680.10 1 198 5.5E-56 T 17-10-2018 IPR036590 SOS response associated peptidase-like VI35_08955 70393ebb1497961653c586ee36a0c170 213 SUPERFAMILY SSF143081 11 193 2.62E-48 T 17-10-2018 IPR036590 SOS response associated peptidase-like VI35_06485 57b7932abd03b6aaf7d9c1c710ccfe7d 325 Gene3D G3DSA:3.40.50.150 101 294 6.7E-23 T 17-10-2018 VI35_06485 57b7932abd03b6aaf7d9c1c710ccfe7d 325 SUPERFAMILY SSF53335 91 322 6.16E-36 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_06485 57b7932abd03b6aaf7d9c1c710ccfe7d 325 Pfam PF08003 Protein of unknown function (DUF1698) 7 322 2.2E-161 T 17-10-2018 IPR027555 tRNA (mo5U34)-methyltransferase-like VI35_06485 57b7932abd03b6aaf7d9c1c710ccfe7d 325 TIGRFAM TIGR00452 TIGR00452: tRNA (mo5U34)-methyltransferase 7 321 9.4E-150 T 17-10-2018 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 VI35_06485 57b7932abd03b6aaf7d9c1c710ccfe7d 325 Hamap MF_01590 tRNA U34 carboxymethyltransferase [cmoB]. 12 322 55.919 T 17-10-2018 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 VI35_04110 c279f305e613db3b7c3b3c50f5f7889b 231 Gene3D G3DSA:3.40.50.150 22 231 4.7E-74 T 17-10-2018 VI35_04110 c279f305e613db3b7c3b3c50f5f7889b 231 Pfam PF02390 Putative methyltransferase 56 225 1.1E-62 T 17-10-2018 VI35_04110 c279f305e613db3b7c3b3c50f5f7889b 231 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 16 230 30.914 T 17-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 VI35_04110 c279f305e613db3b7c3b3c50f5f7889b 231 SUPERFAMILY SSF53335 8 229 3.79E-44 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_04110 c279f305e613db3b7c3b3c50f5f7889b 231 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 47 230 1.8E-68 T 17-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 VI35_13695 30539bbafaa4cb1ccf2b37f67c90cde7 300 SUPERFAMILY SSF103481 210 297 1.12E-10 T 17-10-2018 VI35_13695 30539bbafaa4cb1ccf2b37f67c90cde7 300 SUPERFAMILY SSF103481 36 141 6.02E-12 T 17-10-2018 VI35_13695 30539bbafaa4cb1ccf2b37f67c90cde7 300 Pfam PF00892 EamA-like transporter family 158 296 1.0E-11 T 17-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VI35_13695 30539bbafaa4cb1ccf2b37f67c90cde7 300 Pfam PF00892 EamA-like transporter family 4 135 2.2E-14 T 17-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VI35_03455 4946182a0a2f0c88ba53583692b5bc87 530 Pfam PF01808 AICARFT/IMPCHase bienzyme 137 461 2.6E-117 T 17-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 VI35_03455 4946182a0a2f0c88ba53583692b5bc87 530 SUPERFAMILY SSF53927 222 530 2.21E-129 T 17-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 VI35_03455 4946182a0a2f0c88ba53583692b5bc87 530 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 7 530 45.188 T 17-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 VI35_03455 4946182a0a2f0c88ba53583692b5bc87 530 Pfam PF02142 MGS-like domain 19 132 8.6E-30 T 17-10-2018 IPR011607 Methylglyoxal synthase-like domain VI35_03455 4946182a0a2f0c88ba53583692b5bc87 530 Gene3D G3DSA:3.40.140.20 220 373 3.1E-56 T 17-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 VI35_03455 4946182a0a2f0c88ba53583692b5bc87 530 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 8 530 6.0E-255 T 17-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 VI35_03455 4946182a0a2f0c88ba53583692b5bc87 530 Gene3D G3DSA:3.40.50.1380 1 200 3.5E-86 T 17-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily VI35_03455 4946182a0a2f0c88ba53583692b5bc87 530 PIRSF PIRSF000414 1 530 1.1E-225 T 17-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 VI35_03455 4946182a0a2f0c88ba53583692b5bc87 530 Gene3D G3DSA:3.40.140.20 394 530 2.2E-59 T 17-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 VI35_03455 4946182a0a2f0c88ba53583692b5bc87 530 SUPERFAMILY SSF52335 7 196 9.68E-71 T 17-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily VI35_03455 4946182a0a2f0c88ba53583692b5bc87 530 SMART SM00798 137 462 1.3E-217 T 17-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 VI35_03455 4946182a0a2f0c88ba53583692b5bc87 530 SMART SM00851 19 132 5.9E-63 T 17-10-2018 IPR011607 Methylglyoxal synthase-like domain VI35_02385 4778ffe43db27c892d07671935221aa3 636 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 419 603 6.4E-41 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_02385 4778ffe43db27c892d07671935221aa3 636 Pfam PF02743 Cache domain 43 267 1.6E-12 T 17-10-2018 IPR033479 Double Cache domain 1 VI35_02385 4778ffe43db27c892d07671935221aa3 636 Pfam PF00672 HAMP domain 306 355 1.2E-10 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_02385 4778ffe43db27c892d07671935221aa3 636 SUPERFAMILY SSF58104 327 636 1.96E-77 T 17-10-2018 VI35_02385 4778ffe43db27c892d07671935221aa3 636 Gene3D G3DSA:3.30.450.20 163 282 5.6E-18 T 17-10-2018 VI35_02385 4778ffe43db27c892d07671935221aa3 636 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 501 530 6.9E-8 T 17-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VI35_02385 4778ffe43db27c892d07671935221aa3 636 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 388 417 6.9E-8 T 17-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VI35_02385 4778ffe43db27c892d07671935221aa3 636 Gene3D G3DSA:1.10.287.950 305 636 1.4E-76 T 17-10-2018 VI35_02385 4778ffe43db27c892d07671935221aa3 636 SMART SM00304 305 359 1.6E-12 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_02385 4778ffe43db27c892d07671935221aa3 636 SMART SM00283 374 635 1.6E-86 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_07500 0dceee1b0ca20f87eda4786beee446c9 252 Gene3D G3DSA:3.40.190.10 113 212 4.6E-10 T 17-10-2018 VI35_07500 0dceee1b0ca20f87eda4786beee446c9 252 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 36 251 1.0E-8 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_07500 0dceee1b0ca20f87eda4786beee446c9 252 Gene3D G3DSA:3.40.190.10 38 251 4.6E-10 T 17-10-2018 VI35_07500 0dceee1b0ca20f87eda4786beee446c9 252 SUPERFAMILY SSF53850 34 251 8.69E-21 T 17-10-2018 VI35_13300 773cab909da2035f0010cfb2e1363326 301 SUPERFAMILY SSF46785 4 111 1.4E-21 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_13300 773cab909da2035f0010cfb2e1363326 301 Gene3D G3DSA:3.40.190.290 91 294 2.4E-65 T 17-10-2018 VI35_13300 773cab909da2035f0010cfb2e1363326 301 SUPERFAMILY SSF53850 90 296 2.53E-45 T 17-10-2018 VI35_13300 773cab909da2035f0010cfb2e1363326 301 Gene3D G3DSA:1.10.10.10 3 89 3.1E-26 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_13300 773cab909da2035f0010cfb2e1363326 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 5.4E-18 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_13300 773cab909da2035f0010cfb2e1363326 301 Pfam PF03466 LysR substrate binding domain 89 292 2.2E-42 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_11275 16cd059991cea8fdafaf8493313eb111 192 SUPERFAMILY SSF82057 121 192 1.24E-22 T 17-10-2018 VI35_11275 16cd059991cea8fdafaf8493313eb111 192 Pfam PF03831 PhnA domain 127 192 3.0E-25 T 17-10-2018 IPR013988 PhnA protein, C-terminal VI35_11275 16cd059991cea8fdafaf8493313eb111 192 Gene3D G3DSA:2.30.30.40 123 192 5.2E-27 T 17-10-2018 VI35_11275 16cd059991cea8fdafaf8493313eb111 192 SMART SM00782 6 52 2.2E-11 T 17-10-2018 IPR013991 PhnA protein N-terminal, proteobacterial VI35_07315 8fe9992da64f6e2823b9af1861b0f552 257 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 6 250 8.1E-82 T 17-10-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0030288|GO:0071705 VI35_07315 8fe9992da64f6e2823b9af1861b0f552 257 Gene3D G3DSA:3.40.190.10 112 209 5.1E-75 T 17-10-2018 VI35_07315 8fe9992da64f6e2823b9af1861b0f552 257 SMART SM00079 26 252 5.1E-4 T 17-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 VI35_07315 8fe9992da64f6e2823b9af1861b0f552 257 SMART SM00062 26 253 2.6E-66 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_07315 8fe9992da64f6e2823b9af1861b0f552 257 Gene3D G3DSA:3.40.190.10 29 250 5.1E-75 T 17-10-2018 VI35_07315 8fe9992da64f6e2823b9af1861b0f552 257 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 27 251 1.9E-64 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_07315 8fe9992da64f6e2823b9af1861b0f552 257 SUPERFAMILY SSF53850 1 254 3.26E-70 T 17-10-2018 VI35_07315 8fe9992da64f6e2823b9af1861b0f552 257 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 49 62 - T 17-10-2018 IPR018313 Solute-binding protein family 3, conserved site VI35_03545 533f1aa39d574b5c4e1ad1efc5262dd4 542 SMART SM00091 8 75 0.0013 T 17-10-2018 IPR000014 PAS domain VI35_03545 533f1aa39d574b5c4e1ad1efc5262dd4 542 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 317 487 3.4E-38 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_03545 533f1aa39d574b5c4e1ad1efc5262dd4 542 SUPERFAMILY SSF58104 243 522 1.44E-61 T 17-10-2018 VI35_03545 533f1aa39d574b5c4e1ad1efc5262dd4 542 Pfam PF08447 PAS fold 31 115 7.4E-19 T 17-10-2018 IPR013655 PAS fold-3 GO:0005515 VI35_03545 533f1aa39d574b5c4e1ad1efc5262dd4 542 SUPERFAMILY SSF55785 20 115 1.27E-27 T 17-10-2018 IPR035965 PAS domain superfamily VI35_03545 533f1aa39d574b5c4e1ad1efc5262dd4 542 SMART SM00283 260 521 3.1E-61 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_03545 533f1aa39d574b5c4e1ad1efc5262dd4 542 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 16 111 7.8E-14 T 17-10-2018 IPR000014 PAS domain VI35_03545 533f1aa39d574b5c4e1ad1efc5262dd4 542 Gene3D G3DSA:1.10.287.950 191 522 9.5E-57 T 17-10-2018 VI35_03545 533f1aa39d574b5c4e1ad1efc5262dd4 542 Gene3D G3DSA:3.30.450.20 4 117 5.0E-25 T 17-10-2018 VI35_11075 53e24ca9db5c8a0df13001e8342000c2 257 SUPERFAMILY SSF52467 5 235 6.34E-74 T 17-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily VI35_11075 53e24ca9db5c8a0df13001e8342000c2 257 Hamap MF_01121 NAD-dependent protein deacylase [cobB]. 6 236 58.9 T 17-10-2018 IPR027546 Sirtuin, class III GO:0036054|GO:0036055|GO:0070403 Reactome: R-HSA-2151201 VI35_11075 53e24ca9db5c8a0df13001e8342000c2 257 Gene3D G3DSA:3.30.1600.10 22 158 2.8E-79 T 17-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily VI35_11075 53e24ca9db5c8a0df13001e8342000c2 257 Gene3D G3DSA:3.40.50.1220 8 227 2.8E-79 T 17-10-2018 VI35_11075 53e24ca9db5c8a0df13001e8342000c2 257 Pfam PF02146 Sir2 family 13 186 7.5E-50 T 17-10-2018 IPR003000 Sirtuin family GO:0070403 VI35_04060 03563dd637f6ce014120e5260cb4089a 136 Pfam PF00571 CBS domain 3 57 2.8E-13 T 17-10-2018 IPR000644 CBS domain VI35_04060 03563dd637f6ce014120e5260cb4089a 136 Pfam PF00571 CBS domain 78 130 3.7E-15 T 17-10-2018 IPR000644 CBS domain VI35_04060 03563dd637f6ce014120e5260cb4089a 136 SUPERFAMILY SSF54631 1 132 4.17E-35 T 17-10-2018 VI35_04060 03563dd637f6ce014120e5260cb4089a 136 SMART SM00116 84 131 2.3E-10 T 17-10-2018 IPR000644 CBS domain VI35_04060 03563dd637f6ce014120e5260cb4089a 136 SMART SM00116 10 57 6.5E-11 T 17-10-2018 IPR000644 CBS domain VI35_04060 03563dd637f6ce014120e5260cb4089a 136 Gene3D G3DSA:3.10.580.10 1 134 3.0E-41 T 17-10-2018 VI35_06820 4f2dccf6bcfc5e5ac143012913060ce5 829 Hamap MF_01630 Periplasmic nitrate reductase [napA]. 1 829 32.79 T 17-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 VI35_06820 4f2dccf6bcfc5e5ac143012913060ce5 829 SUPERFAMILY SSF50692 689 829 7.05E-44 T 17-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily VI35_06820 4f2dccf6bcfc5e5ac143012913060ce5 829 Gene3D G3DSA:2.40.40.20 705 829 2.0E-49 T 17-10-2018 VI35_06820 4f2dccf6bcfc5e5ac143012913060ce5 829 Gene3D G3DSA:3.40.228.10 177 704 0.0 T 17-10-2018 VI35_06820 4f2dccf6bcfc5e5ac143012913060ce5 829 SUPERFAMILY SSF53706 38 701 2.62E-206 T 17-10-2018 VI35_06820 4f2dccf6bcfc5e5ac143012913060ce5 829 Pfam PF01568 Molydopterin dinucleotide binding domain 715 823 5.0E-28 T 17-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 VI35_06820 4f2dccf6bcfc5e5ac143012913060ce5 829 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 2 24 2.5E-5 T 17-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal VI35_06820 4f2dccf6bcfc5e5ac143012913060ce5 829 Gene3D G3DSA:3.40.50.740 98 624 0.0 T 17-10-2018 VI35_06820 4f2dccf6bcfc5e5ac143012913060ce5 829 SMART SM00926 41 95 3.1E-13 T 17-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_06820 4f2dccf6bcfc5e5ac143012913060ce5 829 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 23 1.1E-4 T 17-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal VI35_06820 4f2dccf6bcfc5e5ac143012913060ce5 829 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 42 94 8.3E-17 T 17-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_06820 4f2dccf6bcfc5e5ac143012913060ce5 829 TIGRFAM TIGR01706 NAPA: periplasmic nitrate reductase, large subunit 2 829 0.0 T 17-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 VI35_06820 4f2dccf6bcfc5e5ac143012913060ce5 829 Pfam PF00384 Molybdopterin oxidoreductase 98 570 3.1E-95 T 17-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_06820 4f2dccf6bcfc5e5ac143012913060ce5 829 Gene3D G3DSA:3.30.200.210 41 667 0.0 T 17-10-2018 VI35_09365 5f87f5e6aadd0b5bd41bf073ad211569 303 Pfam PF12833 Helix-turn-helix domain 220 298 1.8E-20 T 17-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VI35_09365 5f87f5e6aadd0b5bd41bf073ad211569 303 SUPERFAMILY SSF46689 197 247 7.35E-7 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_09365 5f87f5e6aadd0b5bd41bf073ad211569 303 Pfam PF02311 AraC-like ligand binding domain 43 177 3.8E-21 T 17-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 VI35_09365 5f87f5e6aadd0b5bd41bf073ad211569 303 SUPERFAMILY SSF51215 27 185 1.31E-32 T 17-10-2018 IPR037923 Transcription regulator HTH-like VI35_09365 5f87f5e6aadd0b5bd41bf073ad211569 303 Gene3D G3DSA:2.60.120.280 27 191 7.9E-64 T 17-10-2018 VI35_09365 5f87f5e6aadd0b5bd41bf073ad211569 303 SUPERFAMILY SSF46689 251 298 2.87E-13 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_09365 5f87f5e6aadd0b5bd41bf073ad211569 303 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 266 281 9.4E-7 T 17-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VI35_09365 5f87f5e6aadd0b5bd41bf073ad211569 303 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 281 297 9.4E-7 T 17-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VI35_09365 5f87f5e6aadd0b5bd41bf073ad211569 303 SMART SM00342 214 297 1.2E-32 T 17-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VI35_09365 5f87f5e6aadd0b5bd41bf073ad211569 303 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 251 293 - T 17-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VI35_09365 5f87f5e6aadd0b5bd41bf073ad211569 303 Gene3D G3DSA:1.10.10.60 196 255 3.2E-14 T 17-10-2018 VI35_09365 5f87f5e6aadd0b5bd41bf073ad211569 303 Gene3D G3DSA:1.10.10.2730 256 298 7.1E-18 T 17-10-2018 VI35_06205 8f952a0e4de714ab89c3e04b252e5184 148 SUPERFAMILY SSF74982 1 125 2.49E-46 T 17-10-2018 IPR023620 Small protein B VI35_06205 8f952a0e4de714ab89c3e04b252e5184 148 TIGRFAM TIGR00086 smpB: SsrA-binding protein 1 143 1.6E-52 T 17-10-2018 IPR000037 SsrA-binding protein GO:0003723 VI35_06205 8f952a0e4de714ab89c3e04b252e5184 148 Hamap MF_00023 SsrA-binding protein [smpB]. 1 148 69.642 T 17-10-2018 IPR000037 SsrA-binding protein GO:0003723 VI35_06205 8f952a0e4de714ab89c3e04b252e5184 148 ProSitePatterns PS01317 SsrA-binding protein. 19 31 - T 17-10-2018 IPR020081 SsrA-binding protein, conserved site VI35_06205 8f952a0e4de714ab89c3e04b252e5184 148 Gene3D G3DSA:2.40.280.10 1 121 3.4E-42 T 17-10-2018 IPR023620 Small protein B VI35_06205 8f952a0e4de714ab89c3e04b252e5184 148 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 1 125 2.0E-48 T 17-10-2018 IPR000037 SsrA-binding protein GO:0003723 VI35_06205 8f952a0e4de714ab89c3e04b252e5184 148 Pfam PF01668 SmpB protein 1 144 2.1E-55 T 17-10-2018 IPR000037 SsrA-binding protein GO:0003723 VI35_09400 2e68e188a22fe6a77e0ba67b715ffd54 549 Gene3D G3DSA:3.90.780.10 341 543 2.1E-36 T 17-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VI35_09400 2e68e188a22fe6a77e0ba67b715ffd54 549 ProSitePatterns PS00786 5'-nucleotidase signature 2. 92 103 - T 17-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VI35_09400 2e68e188a22fe6a77e0ba67b715ffd54 549 Pfam PF00149 Calcineurin-like phosphoesterase 7 236 1.1E-6 T 17-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 VI35_09400 2e68e188a22fe6a77e0ba67b715ffd54 549 Gene3D G3DSA:3.60.21.10 2 296 3.3E-72 T 17-10-2018 IPR029052 Metallo-dependent phosphatase-like VI35_09400 2e68e188a22fe6a77e0ba67b715ffd54 549 SUPERFAMILY SSF56300 3 294 5.89E-66 T 17-10-2018 VI35_09400 2e68e188a22fe6a77e0ba67b715ffd54 549 SUPERFAMILY SSF55816 336 537 3.66E-36 T 17-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VI35_09400 2e68e188a22fe6a77e0ba67b715ffd54 549 Pfam PF02872 5'-nucleotidase, C-terminal domain 358 509 2.7E-24 T 17-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VI35_09400 2e68e188a22fe6a77e0ba67b715ffd54 549 PRINTS PR01607 Apyrase family signature 483 502 4.4E-11 T 17-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VI35_09400 2e68e188a22fe6a77e0ba67b715ffd54 549 PRINTS PR01607 Apyrase family signature 3 21 4.4E-11 T 17-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VI35_09400 2e68e188a22fe6a77e0ba67b715ffd54 549 PRINTS PR01607 Apyrase family signature 259 279 4.4E-11 T 17-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VI35_09400 2e68e188a22fe6a77e0ba67b715ffd54 549 PRINTS PR01607 Apyrase family signature 219 242 4.4E-11 T 17-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VI35_09400 2e68e188a22fe6a77e0ba67b715ffd54 549 PRINTS PR01607 Apyrase family signature 200 217 4.4E-11 T 17-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VI35_15635 162b1fc0e2674ff0820f5c0d109a246c 756 Gene3D G3DSA:1.25.40.10 248 483 2.0E-20 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_15635 162b1fc0e2674ff0820f5c0d109a246c 756 SUPERFAMILY SSF48452 215 356 4.74E-14 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_15635 162b1fc0e2674ff0820f5c0d109a246c 756 Pfam PF13181 Tetratricopeptide repeat 87 117 0.0016 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_15635 162b1fc0e2674ff0820f5c0d109a246c 756 SMART SM00028 288 321 7.4 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_15635 162b1fc0e2674ff0820f5c0d109a246c 756 SMART SM00028 328 361 290.0 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_15635 162b1fc0e2674ff0820f5c0d109a246c 756 SMART SM00028 368 401 87.0 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_15635 162b1fc0e2674ff0820f5c0d109a246c 756 SMART SM00028 85 118 0.065 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_15635 162b1fc0e2674ff0820f5c0d109a246c 756 SUPERFAMILY SSF48452 77 173 4.17E-5 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_15635 162b1fc0e2674ff0820f5c0d109a246c 756 SUPERFAMILY SSF48452 327 437 6.54E-11 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_15635 162b1fc0e2674ff0820f5c0d109a246c 756 Gene3D G3DSA:1.25.40.10 71 243 2.1E-8 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_10465 802a697d49dccab8c2f198af92b99087 256 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_10465 802a697d49dccab8c2f198af92b99087 256 Gene3D G3DSA:3.40.50.300 1 249 6.0E-65 T 17-10-2018 VI35_10465 802a697d49dccab8c2f198af92b99087 256 SUPERFAMILY SSF52540 2 225 1.36E-57 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_10465 802a697d49dccab8c2f198af92b99087 256 Pfam PF00005 ABC transporter 17 163 4.7E-30 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_10465 802a697d49dccab8c2f198af92b99087 256 SMART SM00382 26 213 2.3E-9 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_05075 150734bd55d527e28fd25519b01b033d 217 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 6 68 5.6E-9 T 17-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 VI35_05075 150734bd55d527e28fd25519b01b033d 217 Pfam PF01467 Cytidylyltransferase-like 8 185 1.3E-28 T 17-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 VI35_05075 150734bd55d527e28fd25519b01b033d 217 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 8 211 1.0E-50 T 17-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 VI35_05075 150734bd55d527e28fd25519b01b033d 217 Gene3D G3DSA:3.40.50.620 5 216 2.2E-65 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_05075 150734bd55d527e28fd25519b01b033d 217 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 4 212 30.826 T 17-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 VI35_05075 150734bd55d527e28fd25519b01b033d 217 SUPERFAMILY SSF52374 4 214 1.81E-57 T 17-10-2018 VI35_03955 69852b0686cf1c42ad22ee87aa6e265d 297 Gene3D G3DSA:3.40.190.10 90 274 1.2E-20 T 17-10-2018 VI35_03955 69852b0686cf1c42ad22ee87aa6e265d 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 2.6E-16 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_03955 69852b0686cf1c42ad22ee87aa6e265d 297 SUPERFAMILY SSF46785 1 82 6.93E-18 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_03955 69852b0686cf1c42ad22ee87aa6e265d 297 Gene3D G3DSA:1.10.10.10 1 85 2.7E-18 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_03955 69852b0686cf1c42ad22ee87aa6e265d 297 Gene3D G3DSA:3.40.190.10 160 263 1.2E-20 T 17-10-2018 VI35_03955 69852b0686cf1c42ad22ee87aa6e265d 297 SUPERFAMILY SSF53850 90 292 1.03E-25 T 17-10-2018 VI35_03955 69852b0686cf1c42ad22ee87aa6e265d 297 Pfam PF03466 LysR substrate binding domain 90 287 6.2E-24 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_03355 35bebc4635770c9d495ae71742a8fe84 105 Pfam PF04977 Septum formation initiator 11 89 2.7E-21 T 17-10-2018 IPR007060 Septum formation initiator FtsL/DivIC VI35_03355 35bebc4635770c9d495ae71742a8fe84 105 Hamap MF_00599 Cell division protein FtsB [ftsB]. 1 90 32.926 T 17-10-2018 IPR023081 Cell division protein FtsB VI35_07495 dea06f9c77549001edc4f42cc012d71a 230 SUPERFAMILY SSF53167 1 228 2.88E-67 T 17-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 VI35_07495 dea06f9c77549001edc4f42cc012d71a 230 Hamap MF_01684 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [mtnN]. 2 230 45.627 T 17-10-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VI35_07495 dea06f9c77549001edc4f42cc012d71a 230 TIGRFAM TIGR01704 MTA/SAH-Nsdase: MTA/SAH nucleosidase 2 229 2.1E-91 T 17-10-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VI35_07495 dea06f9c77549001edc4f42cc012d71a 230 Gene3D G3DSA:3.40.50.1580 1 229 4.7E-67 T 17-10-2018 VI35_07495 dea06f9c77549001edc4f42cc012d71a 230 Pfam PF01048 Phosphorylase superfamily 2 227 1.9E-47 T 17-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 VI35_03200 984635d8366fa6c1725a3c0c74f677a2 387 PRINTS PR00477 Phosphoglycerate kinase family signature 132 154 7.0E-82 T 17-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_03200 984635d8366fa6c1725a3c0c74f677a2 387 PRINTS PR00477 Phosphoglycerate kinase family signature 336 347 7.0E-82 T 17-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_03200 984635d8366fa6c1725a3c0c74f677a2 387 PRINTS PR00477 Phosphoglycerate kinase family signature 186 205 7.0E-82 T 17-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_03200 984635d8366fa6c1725a3c0c74f677a2 387 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 7.0E-82 T 17-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_03200 984635d8366fa6c1725a3c0c74f677a2 387 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 7.0E-82 T 17-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_03200 984635d8366fa6c1725a3c0c74f677a2 387 PRINTS PR00477 Phosphoglycerate kinase family signature 359 376 7.0E-82 T 17-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_03200 984635d8366fa6c1725a3c0c74f677a2 387 PRINTS PR00477 Phosphoglycerate kinase family signature 104 119 7.0E-82 T 17-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_03200 984635d8366fa6c1725a3c0c74f677a2 387 PRINTS PR00477 Phosphoglycerate kinase family signature 163 185 7.0E-82 T 17-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_03200 984635d8366fa6c1725a3c0c74f677a2 387 PRINTS PR00477 Phosphoglycerate kinase family signature 303 328 7.0E-82 T 17-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_03200 984635d8366fa6c1725a3c0c74f677a2 387 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 15 25 - T 17-10-2018 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_03200 984635d8366fa6c1725a3c0c74f677a2 387 Gene3D G3DSA:3.40.50.1260 165 373 4.8E-153 T 17-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_03200 984635d8366fa6c1725a3c0c74f677a2 387 Gene3D G3DSA:3.40.50.1260 10 379 4.8E-153 T 17-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_03200 984635d8366fa6c1725a3c0c74f677a2 387 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 8 383 38.654 T 17-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_03200 984635d8366fa6c1725a3c0c74f677a2 387 PIRSF PIRSF000724 1 387 2.6E-133 T 17-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_03200 984635d8366fa6c1725a3c0c74f677a2 387 Pfam PF00162 Phosphoglycerate kinase 6 373 4.9E-138 T 17-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_03200 984635d8366fa6c1725a3c0c74f677a2 387 SUPERFAMILY SSF53748 3 383 2.94E-144 T 17-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_10035 0fc91113a9e6f243e66ff803e5a25c02 366 Gene3D G3DSA:3.90.226.10 4 365 1.3E-117 T 17-10-2018 VI35_10035 0fc91113a9e6f243e66ff803e5a25c02 366 SUPERFAMILY SSF52096 15 343 5.29E-65 T 17-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VI35_10035 0fc91113a9e6f243e66ff803e5a25c02 366 Pfam PF16113 Enoyl-CoA hydratase/isomerase 18 345 2.8E-112 T 17-10-2018 IPR032259 Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type GO:0003860 Reactome: R-HSA-70895 VI35_14325 9ef4806fa61b4217900fd9f137048f28 378 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 348 8.0E-140 T 17-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 VI35_14325 9ef4806fa61b4217900fd9f137048f28 378 Gene3D G3DSA:1.10.287.110 1 112 1.5E-36 T 17-10-2018 IPR036869 Chaperone J-domain superfamily VI35_14325 9ef4806fa61b4217900fd9f137048f28 378 SUPERFAMILY SSF49493 258 343 1.57E-22 T 17-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 VI35_14325 9ef4806fa61b4217900fd9f137048f28 378 SUPERFAMILY SSF46565 1 109 9.29E-37 T 17-10-2018 IPR036869 Chaperone J-domain superfamily VI35_14325 9ef4806fa61b4217900fd9f137048f28 378 SMART SM00271 4 62 7.1E-32 T 17-10-2018 IPR001623 DnaJ domain VI35_14325 9ef4806fa61b4217900fd9f137048f28 378 SUPERFAMILY SSF49493 112 259 1.31E-19 T 17-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 VI35_14325 9ef4806fa61b4217900fd9f137048f28 378 Pfam PF00226 DnaJ domain 5 67 5.7E-28 T 17-10-2018 IPR001623 DnaJ domain VI35_14325 9ef4806fa61b4217900fd9f137048f28 378 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 17-10-2018 IPR018253 DnaJ domain, conserved site VI35_14325 9ef4806fa61b4217900fd9f137048f28 378 Pfam PF00684 DnaJ central domain 146 206 1.2E-15 T 17-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 VI35_14325 9ef4806fa61b4217900fd9f137048f28 378 PRINTS PR00625 DnaJ domain signature 7 25 1.9E-30 T 17-10-2018 IPR001623 DnaJ domain VI35_14325 9ef4806fa61b4217900fd9f137048f28 378 PRINTS PR00625 DnaJ domain signature 25 40 1.9E-30 T 17-10-2018 IPR001623 DnaJ domain VI35_14325 9ef4806fa61b4217900fd9f137048f28 378 PRINTS PR00625 DnaJ domain signature 42 62 1.9E-30 T 17-10-2018 IPR001623 DnaJ domain VI35_14325 9ef4806fa61b4217900fd9f137048f28 378 PRINTS PR00625 DnaJ domain signature 62 81 1.9E-30 T 17-10-2018 IPR001623 DnaJ domain VI35_14325 9ef4806fa61b4217900fd9f137048f28 378 SUPERFAMILY SSF57938 133 210 6.02E-23 T 17-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily VI35_14325 9ef4806fa61b4217900fd9f137048f28 378 Pfam PF01556 DnaJ C terminal domain 120 332 7.5E-47 T 17-10-2018 IPR002939 Chaperone DnaJ, C-terminal VI35_14325 9ef4806fa61b4217900fd9f137048f28 378 Gene3D G3DSA:2.10.230.10 146 206 2.1E-39 T 17-10-2018 VI35_14325 9ef4806fa61b4217900fd9f137048f28 378 Gene3D G3DSA:2.60.260.20 116 248 2.1E-39 T 17-10-2018 VI35_14325 9ef4806fa61b4217900fd9f137048f28 378 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 372 42.026 T 17-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 VI35_14325 9ef4806fa61b4217900fd9f137048f28 378 Gene3D G3DSA:2.60.260.20 252 332 8.2E-29 T 17-10-2018 VI35_02035 f669c0de6224c63048cd8f9cca7cab25 342 Gene3D G3DSA:1.10.220.30 13 94 2.4E-17 T 17-10-2018 VI35_02035 f669c0de6224c63048cd8f9cca7cab25 342 Pfam PF14841 FliG middle domain 126 198 2.6E-18 T 17-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain VI35_02035 f669c0de6224c63048cd8f9cca7cab25 342 SUPERFAMILY SSF48029 125 333 7.59E-54 T 17-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical VI35_02035 f669c0de6224c63048cd8f9cca7cab25 342 Gene3D G3DSA:1.10.220.30 100 203 1.8E-19 T 17-10-2018 VI35_02035 f669c0de6224c63048cd8f9cca7cab25 342 PRINTS PR00954 Flagellar motor switch protein FliG signature 281 307 1.6E-31 T 17-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VI35_02035 f669c0de6224c63048cd8f9cca7cab25 342 PRINTS PR00954 Flagellar motor switch protein FliG signature 257 277 1.6E-31 T 17-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VI35_02035 f669c0de6224c63048cd8f9cca7cab25 342 PRINTS PR00954 Flagellar motor switch protein FliG signature 44 70 1.6E-31 T 17-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VI35_02035 f669c0de6224c63048cd8f9cca7cab25 342 PRINTS PR00954 Flagellar motor switch protein FliG signature 124 147 1.6E-31 T 17-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VI35_02035 f669c0de6224c63048cd8f9cca7cab25 342 PRINTS PR00954 Flagellar motor switch protein FliG signature 15 31 1.6E-31 T 17-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VI35_02035 f669c0de6224c63048cd8f9cca7cab25 342 PRINTS PR00954 Flagellar motor switch protein FliG signature 205 230 1.6E-31 T 17-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VI35_02035 f669c0de6224c63048cd8f9cca7cab25 342 Pfam PF01706 FliG C-terminal domain 228 332 1.8E-26 T 17-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal VI35_02035 f669c0de6224c63048cd8f9cca7cab25 342 SUPERFAMILY SSF48029 15 111 5.49E-16 T 17-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical VI35_02035 f669c0de6224c63048cd8f9cca7cab25 342 Pfam PF14842 FliG N-terminal domain 17 112 4.1E-21 T 17-10-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain VI35_02035 f669c0de6224c63048cd8f9cca7cab25 342 Gene3D G3DSA:1.10.220.30 205 338 1.5E-29 T 17-10-2018 VI35_10245 224802c41c9b6a1da665a30819802bd8 219 SUPERFAMILY SSF56784 1 210 3.28E-51 T 17-10-2018 IPR036412 HAD-like superfamily VI35_10245 224802c41c9b6a1da665a30819802bd8 219 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 147 167 1.9E-6 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_10245 224802c41c9b6a1da665a30819802bd8 219 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 2 13 1.9E-6 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_10245 224802c41c9b6a1da665a30819802bd8 219 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 98 111 1.9E-6 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_10245 224802c41c9b6a1da665a30819802bd8 219 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 129 145 1.9E-6 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_10245 224802c41c9b6a1da665a30819802bd8 219 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 97 178 1.2E-6 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_10245 224802c41c9b6a1da665a30819802bd8 219 Pfam PF13419 Haloacid dehalogenase-like hydrolase 5 184 1.1E-27 T 17-10-2018 VI35_10245 224802c41c9b6a1da665a30819802bd8 219 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 60 184 1.4E-11 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_10245 224802c41c9b6a1da665a30819802bd8 219 Gene3D G3DSA:1.10.150.240 19 82 7.0E-26 T 17-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 VI35_01085 e69c8e40e2dbab949396bf000ffefb79 508 SUPERFAMILY SSF52283 1 166 5.19E-55 T 17-10-2018 VI35_01085 e69c8e40e2dbab949396bf000ffefb79 508 SMART SM01002 144 310 3.2E-84 T 17-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain VI35_01085 e69c8e40e2dbab949396bf000ffefb79 508 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 424 507 7.2E-37 T 17-10-2018 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 VI35_01085 e69c8e40e2dbab949396bf000ffefb79 508 SMART SM01003 4 135 7.7E-75 T 17-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal VI35_01085 e69c8e40e2dbab949396bf000ffefb79 508 SUPERFAMILY SSF51735 136 315 5.49E-38 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_01085 e69c8e40e2dbab949396bf000ffefb79 508 PIRSF PIRSF000203 1 507 4.6E-266 T 17-10-2018 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0055114|GO:1902600 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 VI35_01085 e69c8e40e2dbab949396bf000ffefb79 508 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 134 1.5E-49 T 17-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal VI35_01085 e69c8e40e2dbab949396bf000ffefb79 508 Gene3D G3DSA:3.40.50.720 3 364 1.9E-158 T 17-10-2018 VI35_01085 e69c8e40e2dbab949396bf000ffefb79 508 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 139 367 5.5E-75 T 17-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain VI35_01085 e69c8e40e2dbab949396bf000ffefb79 508 TIGRFAM TIGR00561 pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit 2 507 6.4E-273 T 17-10-2018 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0055114|GO:1902600 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 VI35_01085 e69c8e40e2dbab949396bf000ffefb79 508 ProSitePatterns PS00836 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1. 4 30 - T 17-10-2018 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 GO:0016491|GO:0055114 Reactome: R-HSA-71403 VI35_01085 e69c8e40e2dbab949396bf000ffefb79 508 Gene3D G3DSA:3.40.50.720 135 317 1.9E-158 T 17-10-2018 VI35_01085 e69c8e40e2dbab949396bf000ffefb79 508 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 168 193 - T 17-10-2018 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 VI35_09630 69774dbe072c3b0c6b67644e1f719395 202 TIGRFAM TIGR00547 lolA: outer membrane lipoprotein carrier protein LolA 2 202 6.7E-62 T 17-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 VI35_09630 69774dbe072c3b0c6b67644e1f719395 202 Hamap MF_00240 Outer-membrane lipoprotein carrier protein [lolA]. 5 201 30.432 T 17-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 VI35_09630 69774dbe072c3b0c6b67644e1f719395 202 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 31 191 8.9E-49 T 17-10-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like VI35_09630 69774dbe072c3b0c6b67644e1f719395 202 Gene3D G3DSA:2.50.20.10 18 202 1.0E-51 T 17-10-2018 VI35_09630 69774dbe072c3b0c6b67644e1f719395 202 SUPERFAMILY SSF89392 21 202 2.04E-52 T 17-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX VI35_19400 05960affe7af2080fff82e4b7fa5e150 302 Pfam PF04085 rod shape-determining protein MreC 125 269 6.5E-39 T 17-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 VI35_19400 05960affe7af2080fff82e4b7fa5e150 302 Gene3D G3DSA:2.40.10.350 180 257 2.0E-35 T 17-10-2018 VI35_19400 05960affe7af2080fff82e4b7fa5e150 302 Gene3D G3DSA:2.40.10.340 121 266 2.0E-35 T 17-10-2018 VI35_19400 05960affe7af2080fff82e4b7fa5e150 302 PIRSF PIRSF038471 2 283 1.8E-80 T 17-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 VI35_19400 05960affe7af2080fff82e4b7fa5e150 302 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 1 274 1.5E-85 T 17-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 VI35_04890 d9c801290f4c805d555602ff43c2416a 900 SUPERFAMILY SSF52540 397 566 6.58E-53 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_04890 d9c801290f4c805d555602ff43c2416a 900 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 898 17.634 T 17-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 VI35_04890 d9c801290f4c805d555602ff43c2416a 900 SUPERFAMILY SSF50447 573 655 1.13E-23 T 17-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VI35_04890 d9c801290f4c805d555602ff43c2416a 900 Gene3D G3DSA:2.40.30.10 802 899 1.2E-34 T 17-10-2018 VI35_04890 d9c801290f4c805d555602ff43c2416a 900 Gene3D G3DSA:3.30.56.50 2 51 7.3E-20 T 17-10-2018 VI35_04890 d9c801290f4c805d555602ff43c2416a 900 Gene3D G3DSA:3.40.50.10050 694 801 9.0E-36 T 17-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily VI35_04890 d9c801290f4c805d555602ff43c2416a 900 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 317 900 1.1E-286 T 17-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 VI35_04890 d9c801290f4c805d555602ff43c2416a 900 SUPERFAMILY SSF52156 678 807 6.54E-37 T 17-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily VI35_04890 d9c801290f4c805d555602ff43c2416a 900 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 62 100 8.4E-13 T 17-10-2018 IPR013575 Initiation factor 2 associated domain, bacterial VI35_04890 d9c801290f4c805d555602ff43c2416a 900 Gene3D G3DSA:3.40.50.300 397 571 5.5E-72 T 17-10-2018 VI35_04890 d9c801290f4c805d555602ff43c2416a 900 Pfam PF00009 Elongation factor Tu GTP binding domain 404 560 4.1E-35 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_04890 d9c801290f4c805d555602ff43c2416a 900 Gene3D G3DSA:2.40.30.10 572 690 1.1E-39 T 17-10-2018 VI35_04890 d9c801290f4c805d555602ff43c2416a 900 SUPERFAMILY SSF46955 3 51 1.23E-11 T 17-10-2018 IPR009061 Putative DNA-binding domain superfamily VI35_04890 d9c801290f4c805d555602ff43c2416a 900 SUPERFAMILY SSF50447 801 898 1.39E-34 T 17-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VI35_04890 d9c801290f4c805d555602ff43c2416a 900 Pfam PF11987 Translation-initiation factor 2 685 790 6.5E-36 T 17-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 VI35_04890 d9c801290f4c805d555602ff43c2416a 900 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 325 375 1.7E-14 T 17-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal VI35_04890 d9c801290f4c805d555602ff43c2416a 900 ProSitePatterns PS01176 Initiation factor 2 signature. 851 873 - T 17-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 VI35_04890 d9c801290f4c805d555602ff43c2416a 900 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 404 557 4.1E-31 T 17-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VI35_05445 3d5b05d547f05580a31d1e5c916622f1 265 SMART SM01150 5 263 4.9E-122 T 17-10-2018 IPR009770 Domain of unknown function DUF1338 VI35_05445 3d5b05d547f05580a31d1e5c916622f1 265 Pfam PF07063 Domain of unknown function (DUF1338) 36 262 4.3E-47 T 17-10-2018 IPR009770 Domain of unknown function DUF1338 VI35_05445 3d5b05d547f05580a31d1e5c916622f1 265 Gene3D G3DSA:3.10.180.50 2 240 5.0E-95 T 17-10-2018 VI35_17880 26c73c0ec19bd1163976174771b549a1 87 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 86 2.6E-30 T 17-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_17880 26c73c0ec19bd1163976174771b549a1 87 Pfam PF01649 Ribosomal protein S20 2 84 3.9E-28 T 17-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_17880 26c73c0ec19bd1163976174771b549a1 87 SUPERFAMILY SSF46992 3 86 3.53E-32 T 17-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_17880 26c73c0ec19bd1163976174771b549a1 87 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 17.874 T 17-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_17880 26c73c0ec19bd1163976174771b549a1 87 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 13 87 4.0E-21 T 17-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_17880 26c73c0ec19bd1163976174771b549a1 87 Gene3D G3DSA:1.20.58.110 1 87 2.2E-30 T 17-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_07510 467a3deabacd65bbb4fd75dcedc58390 543 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 325 507 1.6E-41 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_07510 467a3deabacd65bbb4fd75dcedc58390 543 Gene3D G3DSA:1.10.287.950 211 543 5.4E-75 T 17-10-2018 VI35_07510 467a3deabacd65bbb4fd75dcedc58390 543 SMART SM00304 211 265 4.6E-6 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_07510 467a3deabacd65bbb4fd75dcedc58390 543 Pfam PF12729 Four helix bundle sensory module for signal transduction 5 170 1.7E-15 T 17-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain VI35_07510 467a3deabacd65bbb4fd75dcedc58390 543 SMART SM00283 280 541 1.3E-74 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_07510 467a3deabacd65bbb4fd75dcedc58390 543 SUPERFAMILY SSF58104 231 542 5.23E-73 T 17-10-2018 VI35_12115 a946b0fb92c5dfd472a89725f5476a4e 145 Gene3D G3DSA:3.30.450.20 6 137 2.3E-32 T 17-10-2018 VI35_12115 a946b0fb92c5dfd472a89725f5476a4e 145 SMART SM00091 9 75 8.4E-4 T 17-10-2018 IPR000014 PAS domain VI35_12115 a946b0fb92c5dfd472a89725f5476a4e 145 SUPERFAMILY SSF55785 10 125 6.47E-11 T 17-10-2018 IPR035965 PAS domain superfamily VI35_12115 a946b0fb92c5dfd472a89725f5476a4e 145 Pfam PF08448 PAS fold 16 135 1.4E-6 T 17-10-2018 IPR013656 PAS fold-4 VI35_08580 9b8ff9ca5431370c15e18beebe6cf1e6 113 Pfam PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 1 112 1.3E-31 T 17-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 VI35_08580 9b8ff9ca5431370c15e18beebe6cf1e6 113 ProSitePatterns PS01249 Hydrogenases expression/synthesis hypA family signature. 34 76 - T 17-10-2018 IPR020538 Hydrogenase nickel incorporation protein HypA/HybF, conserved site VI35_08580 9b8ff9ca5431370c15e18beebe6cf1e6 113 Gene3D G3DSA:3.30.2320.80 1 113 1.2E-29 T 17-10-2018 VI35_08580 9b8ff9ca5431370c15e18beebe6cf1e6 113 PIRSF PIRSF004761 1 113 4.7E-36 T 17-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 VI35_08580 9b8ff9ca5431370c15e18beebe6cf1e6 113 TIGRFAM TIGR00100 hypA: hydrogenase nickel insertion protein HypA 1 112 1.8E-34 T 17-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 VI35_08580 9b8ff9ca5431370c15e18beebe6cf1e6 113 Hamap MF_00213 Hydrogenase maturation factor HypA [hypA]. 1 113 21.223 T 17-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 VI35_05085 31317c09a7ef3fa6f8aa6e43cd4ad8cb 48 Gene3D G3DSA:3.40.50.300 1 45 9.5E-9 T 17-10-2018 VI35_09735 e4d1071011193671002c4daed57b3bea 112 Hamap MF_00434 Putative pterin-4-alpha-carbinolamine dehydratase. 16 111 21.868 T 17-10-2018 IPR001533 Pterin 4 alpha carbinolamine dehydratase GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 VI35_09735 e4d1071011193671002c4daed57b3bea 112 Pfam PF01329 Pterin 4 alpha carbinolamine dehydratase 18 109 1.0E-28 T 17-10-2018 IPR001533 Pterin 4 alpha carbinolamine dehydratase GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 VI35_09735 e4d1071011193671002c4daed57b3bea 112 SUPERFAMILY SSF55248 16 111 7.46E-32 T 17-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 VI35_09735 e4d1071011193671002c4daed57b3bea 112 Gene3D G3DSA:3.30.1360.20 18 112 3.5E-29 T 17-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 VI35_19580 511b99a293deadee943fa8667a977476 125 ProDom PD076479 MEMBRANE INNER YIJD TRANSMEMBRANE Y0323 AAA SIMILAR A ACETYL-COENZYME VV0128 5 99 6.0E-24 T 17-10-2018 IPR009867 Protein of unknown function DUF1422 VI35_19580 511b99a293deadee943fa8667a977476 125 Pfam PF07226 Protein of unknown function (DUF1422) 10 117 2.1E-41 T 17-10-2018 IPR009867 Protein of unknown function DUF1422 VI35_15535 74197f9f0fc399594eb4ad1fa73a145e 244 Hamap MF_01220_B Uridylate kinase [pyrH]. 7 240 43.872 T 17-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 VI35_15535 74197f9f0fc399594eb4ad1fa73a145e 244 SUPERFAMILY SSF53633 7 240 1.05E-71 T 17-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VI35_15535 74197f9f0fc399594eb4ad1fa73a145e 244 PIRSF PIRSF005650 4 244 2.4E-89 T 17-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 VI35_15535 74197f9f0fc399594eb4ad1fa73a145e 244 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 9 240 1.8E-102 T 17-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 VI35_15535 74197f9f0fc399594eb4ad1fa73a145e 244 Pfam PF00696 Amino acid kinase family 11 219 1.2E-28 T 17-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 VI35_15535 74197f9f0fc399594eb4ad1fa73a145e 244 Gene3D G3DSA:3.40.1160.10 3 244 2.9E-75 T 17-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VI35_18290 cb2de9b7fb01a4876287d5b84b78ceda 791 SUPERFAMILY SSF141371 473 529 6.47E-7 T 17-10-2018 VI35_18290 cb2de9b7fb01a4876287d5b84b78ceda 791 Gene3D G3DSA:2.40.10.220 473 579 4.5E-5 T 17-10-2018 VI35_18290 cb2de9b7fb01a4876287d5b84b78ceda 791 Pfam PF07238 PilZ domain 142 203 5.7E-6 T 17-10-2018 IPR009875 PilZ domain GO:0035438 VI35_18290 cb2de9b7fb01a4876287d5b84b78ceda 791 Pfam PF07238 PilZ domain 473 545 4.8E-6 T 17-10-2018 IPR009875 PilZ domain GO:0035438 VI35_03095 f777b9f9972f47e0c751a28f538abb50 113 Pfam PF06961 Protein of unknown function (DUF1294) 32 86 1.8E-23 T 17-10-2018 IPR010718 Protein of unknown function DUF1294 VI35_03095 f777b9f9972f47e0c751a28f538abb50 113 PIRSF PIRSF002599 17 107 4.4E-17 T 17-10-2018 IPR012156 Cold shock, CspA GO:0003676 VI35_14390 8d4e8df1b818d9e9a2d3fe9eb6555ac9 314 SUPERFAMILY SSF46785 19 125 9.67E-20 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_14390 8d4e8df1b818d9e9a2d3fe9eb6555ac9 314 Gene3D G3DSA:3.40.190.10 174 280 8.6E-45 T 17-10-2018 VI35_14390 8d4e8df1b818d9e9a2d3fe9eb6555ac9 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 20 78 2.3E-18 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_14390 8d4e8df1b818d9e9a2d3fe9eb6555ac9 314 TIGRFAM TIGR02036 dsdC: D-serine deaminase transcriptional activator 11 310 1.4E-131 T 17-10-2018 IPR011781 D-serine deaminase transcriptional activator VI35_14390 8d4e8df1b818d9e9a2d3fe9eb6555ac9 314 Pfam PF03466 LysR substrate binding domain 101 310 2.4E-28 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_14390 8d4e8df1b818d9e9a2d3fe9eb6555ac9 314 Gene3D G3DSA:1.10.10.10 17 104 9.7E-20 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_14390 8d4e8df1b818d9e9a2d3fe9eb6555ac9 314 Gene3D G3DSA:3.40.190.10 114 306 8.6E-45 T 17-10-2018 VI35_14390 8d4e8df1b818d9e9a2d3fe9eb6555ac9 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 45 9.5E-5 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_14390 8d4e8df1b818d9e9a2d3fe9eb6555ac9 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 55 9.5E-5 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_14390 8d4e8df1b818d9e9a2d3fe9eb6555ac9 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 55 66 9.5E-5 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_14390 8d4e8df1b818d9e9a2d3fe9eb6555ac9 314 SUPERFAMILY SSF53850 103 312 3.98E-29 T 17-10-2018 VI35_06415 e84512c4cf64679994f4bc7b15fd8978 607 SUPERFAMILY SSF52091 447 538 5.69E-10 T 17-10-2018 IPR036513 STAS domain superfamily VI35_06415 e84512c4cf64679994f4bc7b15fd8978 607 Gene3D G3DSA:3.30.750.24 437 560 4.9E-20 T 17-10-2018 IPR036513 STAS domain superfamily VI35_06415 e84512c4cf64679994f4bc7b15fd8978 607 Pfam PF00916 Sulfate permease family 26 391 1.5E-84 T 17-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 VI35_06415 e84512c4cf64679994f4bc7b15fd8978 607 Pfam PF01740 STAS domain 444 537 7.5E-14 T 17-10-2018 IPR002645 STAS domain VI35_01870 dd9ade18a2a142158f40ef22ed2f3a58 379 Gene3D G3DSA:2.30.40.10 5 364 1.1E-118 T 17-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VI35_01870 dd9ade18a2a142158f40ef22ed2f3a58 379 SUPERFAMILY SSF51338 1 366 1.5E-16 T 17-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VI35_01870 dd9ade18a2a142158f40ef22ed2f3a58 379 TIGRFAM TIGR03583 EF_0837: putative amidohydrolase, EF_0837/AHA_3915 family 2 366 1.5E-169 T 17-10-2018 IPR020043 Deacetylase Atu3266-like GO:0019213 VI35_01870 dd9ade18a2a142158f40ef22ed2f3a58 379 SUPERFAMILY SSF51556 53 318 8.65E-71 T 17-10-2018 IPR032466 Metal-dependent hydrolase VI35_01870 dd9ade18a2a142158f40ef22ed2f3a58 379 Gene3D G3DSA:3.20.20.140 53 318 1.1E-118 T 17-10-2018 VI35_01870 dd9ade18a2a142158f40ef22ed2f3a58 379 PIRSF PIRSF039004 1 378 6.3E-135 T 17-10-2018 IPR020043 Deacetylase Atu3266-like GO:0019213 VI35_01870 dd9ade18a2a142158f40ef22ed2f3a58 379 Pfam PF01979 Amidohydrolase family 77 333 4.2E-8 T 17-10-2018 IPR006680 Amidohydrolase-related GO:0016787 VI35_12520 7d0edc9aebf41589135d51ab1ac8b069 220 SUPERFAMILY SSF47616 74 200 6.68E-37 T 17-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily VI35_12520 7d0edc9aebf41589135d51ab1ac8b069 220 Pfam PF02798 Glutathione S-transferase, N-terminal domain 3 77 9.1E-18 T 17-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 VI35_12520 7d0edc9aebf41589135d51ab1ac8b069 220 Gene3D G3DSA:1.20.1050.10 83 191 4.5E-87 T 17-10-2018 VI35_12520 7d0edc9aebf41589135d51ab1ac8b069 220 SUPERFAMILY SSF52833 1 84 2.96E-25 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_12520 7d0edc9aebf41589135d51ab1ac8b069 220 Pfam PF00043 Glutathione S-transferase, C-terminal domain 114 192 7.8E-9 T 17-10-2018 IPR004046 Glutathione S-transferase, C-terminal VI35_12520 7d0edc9aebf41589135d51ab1ac8b069 220 Gene3D G3DSA:3.40.30.10 6 196 4.5E-87 T 17-10-2018 VI35_01650 e68d3bff3c82b587a8b2ff7458c3145c 70 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 8.2E-33 T 17-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VI35_01650 e68d3bff3c82b587a8b2ff7458c3145c 70 PIRSF PIRSF002599 1 70 4.0E-26 T 17-10-2018 IPR012156 Cold shock, CspA GO:0003676 VI35_01650 e68d3bff3c82b587a8b2ff7458c3145c 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 17-10-2018 IPR019844 Cold-shock conserved site VI35_01650 e68d3bff3c82b587a8b2ff7458c3145c 70 SMART SM00357 6 70 8.0E-31 T 17-10-2018 IPR011129 Cold shock domain GO:0003676 VI35_01650 e68d3bff3c82b587a8b2ff7458c3145c 70 Gene3D G3DSA:2.40.50.140 1 68 6.4E-32 T 17-10-2018 VI35_01650 e68d3bff3c82b587a8b2ff7458c3145c 70 SUPERFAMILY SSF50249 3 69 2.29E-26 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_01650 e68d3bff3c82b587a8b2ff7458c3145c 70 PRINTS PR00050 Cold shock protein signature 43 61 8.0E-18 T 17-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VI35_01650 e68d3bff3c82b587a8b2ff7458c3145c 70 PRINTS PR00050 Cold shock protein signature 28 37 8.0E-18 T 17-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VI35_01650 e68d3bff3c82b587a8b2ff7458c3145c 70 PRINTS PR00050 Cold shock protein signature 7 22 8.0E-18 T 17-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VI35_06520 7cf015f4e2e20fd6ac6fa6d1be08d11e 425 Pfam PF00480 ROK family 110 410 2.0E-72 T 17-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 VI35_06520 7cf015f4e2e20fd6ac6fa6d1be08d11e 425 Gene3D G3DSA:1.10.10.10 22 99 3.4E-20 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_06520 7cf015f4e2e20fd6ac6fa6d1be08d11e 425 SUPERFAMILY SSF53067 106 413 4.51E-55 T 17-10-2018 VI35_06520 7cf015f4e2e20fd6ac6fa6d1be08d11e 425 Pfam PF01047 MarR family 43 81 1.4E-5 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_06520 7cf015f4e2e20fd6ac6fa6d1be08d11e 425 Gene3D G3DSA:3.30.420.40 228 396 3.2E-92 T 17-10-2018 VI35_06520 7cf015f4e2e20fd6ac6fa6d1be08d11e 425 SUPERFAMILY SSF46785 32 96 1.12E-17 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_06520 7cf015f4e2e20fd6ac6fa6d1be08d11e 425 Gene3D G3DSA:3.30.420.40 111 406 3.2E-92 T 17-10-2018 VI35_06520 7cf015f4e2e20fd6ac6fa6d1be08d11e 425 ProSitePatterns PS01125 ROK family signature. 238 265 - T 17-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 VI35_04615 283bcbadfd710e000adbc5820fbf8bf5 97 Pfam PF07023 Protein of unknown function (DUF1315) 9 88 5.2E-27 T 17-10-2018 IPR009749 Protein of unknown function DUF1315 VI35_08330 b0668f46d13c9666731072b8d818f939 681 SUPERFAMILY SSF69279 197 359 1.34E-42 T 17-10-2018 VI35_08330 b0668f46d13c9666731072b8d818f939 681 Pfam PF05954 Phage late control gene D protein (GPD) 30 325 9.3E-89 T 17-10-2018 VI35_08330 b0668f46d13c9666731072b8d818f939 681 SUPERFAMILY SSF69349 445 626 9.42E-47 T 17-10-2018 VI35_08330 b0668f46d13c9666731072b8d818f939 681 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 22 506 4.5E-148 T 17-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein VI35_08330 b0668f46d13c9666731072b8d818f939 681 Gene3D G3DSA:2.30.110.50 21 328 5.4E-94 T 17-10-2018 VI35_08330 b0668f46d13c9666731072b8d818f939 681 SUPERFAMILY SSF69279 14 185 1.13E-55 T 17-10-2018 VI35_08330 b0668f46d13c9666731072b8d818f939 681 Gene3D G3DSA:3.55.50.10 98 189 5.4E-94 T 17-10-2018 VI35_08330 b0668f46d13c9666731072b8d818f939 681 Gene3D G3DSA:2.40.50.230 359 459 2.9E-42 T 17-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily VI35_08330 b0668f46d13c9666731072b8d818f939 681 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 9 524 8.3E-207 T 17-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset VI35_08330 b0668f46d13c9666731072b8d818f939 681 Gene3D G3DSA:3.30.1920.30 221 284 5.4E-94 T 17-10-2018 VI35_08330 b0668f46d13c9666731072b8d818f939 681 SUPERFAMILY SSF69255 367 454 1.15E-33 T 17-10-2018 VI35_13255 27c7ac10dd83bc5bc16611055c24df46 458 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 2 457 7.5E-187 T 17-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 VI35_13255 27c7ac10dd83bc5bc16611055c24df46 458 SUPERFAMILY SSF52374 1 313 4.56E-104 T 17-10-2018 VI35_13255 27c7ac10dd83bc5bc16611055c24df46 458 SMART SM00840 340 401 1.6E-29 T 17-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 VI35_13255 27c7ac10dd83bc5bc16611055c24df46 458 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 25 36 2.3E-29 T 17-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 VI35_13255 27c7ac10dd83bc5bc16611055c24df46 458 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 222 243 2.3E-29 T 17-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 VI35_13255 27c7ac10dd83bc5bc16611055c24df46 458 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 191 209 2.3E-29 T 17-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 VI35_13255 27c7ac10dd83bc5bc16611055c24df46 458 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 61 70 2.3E-29 T 17-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 VI35_13255 27c7ac10dd83bc5bc16611055c24df46 458 Pfam PF09190 DALR domain 340 401 5.1E-25 T 17-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 VI35_13255 27c7ac10dd83bc5bc16611055c24df46 458 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 2 457 39.241 T 17-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 VI35_13255 27c7ac10dd83bc5bc16611055c24df46 458 Gene3D G3DSA:1.20.120.640 306 458 1.4E-47 T 17-10-2018 VI35_13255 27c7ac10dd83bc5bc16611055c24df46 458 SUPERFAMILY SSF47323 316 457 5.62E-38 T 17-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_13255 27c7ac10dd83bc5bc16611055c24df46 458 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 15 313 1.8E-137 T 17-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 VI35_13255 27c7ac10dd83bc5bc16611055c24df46 458 Gene3D G3DSA:3.40.50.620 1 305 1.4E-136 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_14340 bdaed84228dc69e9b8aab7878cf9a200 294 Hamap MF_00361 NAD kinase [nadK]. 6 289 33.831 T 17-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 VI35_14340 bdaed84228dc69e9b8aab7878cf9a200 294 Gene3D G3DSA:2.60.200.30 128 266 1.4E-92 T 17-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 VI35_14340 bdaed84228dc69e9b8aab7878cf9a200 294 SUPERFAMILY SSF111331 7 291 3.79E-91 T 17-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily VI35_14340 bdaed84228dc69e9b8aab7878cf9a200 294 Pfam PF01513 ATP-NAD kinase 8 273 1.1E-66 T 17-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 VI35_14340 bdaed84228dc69e9b8aab7878cf9a200 294 Gene3D G3DSA:3.40.50.10330 25 289 1.4E-92 T 17-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 VI35_05605 b778cb460e0b295e241b9bbd68377ae5 427 Gene3D G3DSA:1.10.3860.10 1 416 8.9E-116 T 17-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 VI35_05605 b778cb460e0b295e241b9bbd68377ae5 427 SUPERFAMILY SSF118215 9 400 6.67E-117 T 17-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 VI35_05605 b778cb460e0b295e241b9bbd68377ae5 427 Hamap MF_01300 C4-dicarboxylate transport protein [dctA]. 2 427 37.715 T 17-10-2018 IPR023954 C4-dicarboxylate transport protein GO:0006835|GO:0015293|GO:0016021 VI35_05605 b778cb460e0b295e241b9bbd68377ae5 427 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 36 51 - T 17-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site VI35_05605 b778cb460e0b295e241b9bbd68377ae5 427 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 295 318 - T 17-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site VI35_05605 b778cb460e0b295e241b9bbd68377ae5 427 Pfam PF00375 Sodium:dicarboxylate symporter family 9 400 1.9E-107 T 17-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 VI35_05605 b778cb460e0b295e241b9bbd68377ae5 427 PRINTS PR00173 Glutamate-aspartate symporter signature 44 64 4.7E-37 T 17-10-2018 VI35_05605 b778cb460e0b295e241b9bbd68377ae5 427 PRINTS PR00173 Glutamate-aspartate symporter signature 74 99 4.7E-37 T 17-10-2018 VI35_05605 b778cb460e0b295e241b9bbd68377ae5 427 PRINTS PR00173 Glutamate-aspartate symporter signature 3 23 4.7E-37 T 17-10-2018 VI35_05605 b778cb460e0b295e241b9bbd68377ae5 427 PRINTS PR00173 Glutamate-aspartate symporter signature 292 318 4.7E-37 T 17-10-2018 VI35_05605 b778cb460e0b295e241b9bbd68377ae5 427 PRINTS PR00173 Glutamate-aspartate symporter signature 145 167 4.7E-37 T 17-10-2018 VI35_05605 b778cb460e0b295e241b9bbd68377ae5 427 PRINTS PR00173 Glutamate-aspartate symporter signature 192 211 4.7E-37 T 17-10-2018 VI35_05605 b778cb460e0b295e241b9bbd68377ae5 427 PRINTS PR00173 Glutamate-aspartate symporter signature 327 346 4.7E-37 T 17-10-2018 VI35_07550 935bdb0b0094ffbf469b3924b34ed64a 193 Hamap MF_00459 Ion-translocating oxidoreductase complex subunit A [rsxA]. 2 191 26.088 T 17-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 VI35_07550 935bdb0b0094ffbf469b3924b34ed64a 193 PIRSF PIRSF006102 1 193 1.7E-61 T 17-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 VI35_07550 935bdb0b0094ffbf469b3924b34ed64a 193 TIGRFAM TIGR01943 rnfA: electron transport complex, RnfABCDGE type, A subunit 3 191 1.2E-87 T 17-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 VI35_07550 935bdb0b0094ffbf469b3924b34ed64a 193 Pfam PF02508 Rnf-Nqr subunit, membrane protein 5 191 1.1E-58 T 17-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 VI35_04470 c6296d3e92178346ea39f17b4f03f8bc 252 Gene3D G3DSA:3.30.950.10 118 251 9.4E-36 T 17-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 VI35_04470 c6296d3e92178346ea39f17b4f03f8bc 252 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 3 237 5.1E-80 T 17-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VI35_04470 c6296d3e92178346ea39f17b4f03f8bc 252 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 4 212 9.2E-44 T 17-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 VI35_04470 c6296d3e92178346ea39f17b4f03f8bc 252 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 82 115 - T 17-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VI35_04470 c6296d3e92178346ea39f17b4f03f8bc 252 SUPERFAMILY SSF53790 2 242 4.45E-66 T 17-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 VI35_04470 c6296d3e92178346ea39f17b4f03f8bc 252 Gene3D G3DSA:3.40.1010.10 1 117 2.2E-39 T 17-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 VI35_04470 c6296d3e92178346ea39f17b4f03f8bc 252 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 7 21 - T 17-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VI35_10685 dead52acff39ef6300d35c03de999206 338 Pfam PF01966 HD domain 153 273 3.0E-23 T 17-10-2018 IPR006674 HD domain VI35_10685 dead52acff39ef6300d35c03de999206 338 SUPERFAMILY SSF52172 1 127 4.27E-37 T 17-10-2018 IPR011006 CheY-like superfamily VI35_10685 dead52acff39ef6300d35c03de999206 338 Gene3D G3DSA:1.10.3210.10 127 326 5.4E-71 T 17-10-2018 VI35_10685 dead52acff39ef6300d35c03de999206 338 SUPERFAMILY SSF109604 126 314 8.22E-42 T 17-10-2018 VI35_10685 dead52acff39ef6300d35c03de999206 338 Pfam PF00072 Response regulator receiver domain 6 116 1.4E-24 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_10685 dead52acff39ef6300d35c03de999206 338 SMART SM00448 4 116 8.2E-34 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_10685 dead52acff39ef6300d35c03de999206 338 Gene3D G3DSA:3.40.50.2300 1 126 1.1E-35 T 17-10-2018 VI35_10685 dead52acff39ef6300d35c03de999206 338 SMART SM00471 146 283 2.4E-11 T 17-10-2018 IPR003607 HD/PDEase domain VI35_12710 cdf462ee0cfdf3fb1378b4d38767b1c8 214 Pfam PF00849 RNA pseudouridylate synthase 10 152 1.0E-24 T 17-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_12710 cdf462ee0cfdf3fb1378b4d38767b1c8 214 Gene3D G3DSA:3.30.2350.10 1 194 2.9E-47 T 17-10-2018 VI35_12710 cdf462ee0cfdf3fb1378b4d38767b1c8 214 TIGRFAM TIGR01621 RluA-like: pseudouridine synthase Rlu family protein, TIGR01621 2 210 3.5E-77 T 17-10-2018 IPR006508 Pseudouridine synthase, RluA-like VI35_12710 cdf462ee0cfdf3fb1378b4d38767b1c8 214 SUPERFAMILY SSF55120 3 202 1.6E-46 T 17-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_12710 cdf462ee0cfdf3fb1378b4d38767b1c8 214 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 46 60 - T 17-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_18610 e993bf56bb657e61cd64d87331594fc5 246 Gene3D G3DSA:3.40.30.10 76 245 1.1E-39 T 17-10-2018 VI35_18610 e993bf56bb657e61cd64d87331594fc5 246 SUPERFAMILY SSF52833 75 239 3.48E-36 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_18610 e993bf56bb657e61cd64d87331594fc5 246 ProSitePatterns PS00194 Thioredoxin family active site. 98 116 - T 17-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 VI35_18610 e993bf56bb657e61cd64d87331594fc5 246 Pfam PF13462 Thioredoxin 83 239 8.5E-21 T 17-10-2018 IPR012336 Thioredoxin-like fold VI35_06105 fa0289239269e4e195908ee280462bb5 212 Gene3D G3DSA:2.30.110.10 14 212 2.2E-77 T 17-10-2018 IPR012349 FMN-binding split barrel GO:0048037 VI35_06105 fa0289239269e4e195908ee280462bb5 212 PIRSF PIRSF000190 1 212 1.8E-79 T 17-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 VI35_06105 fa0289239269e4e195908ee280462bb5 212 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 182 195 - T 17-10-2018 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 VI35_06105 fa0289239269e4e195908ee280462bb5 212 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 172 212 1.3E-18 T 17-10-2018 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 VI35_06105 fa0289239269e4e195908ee280462bb5 212 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 2 212 4.1E-92 T 17-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 VI35_06105 fa0289239269e4e195908ee280462bb5 212 SUPERFAMILY SSF50475 15 212 1.03E-68 T 17-10-2018 VI35_06105 fa0289239269e4e195908ee280462bb5 212 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 10 212 38.406 T 17-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 VI35_06105 fa0289239269e4e195908ee280462bb5 212 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 35 116 1.5E-23 T 17-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 VI35_00600 c23148b3c514f63860a9ef0e50e42aeb 314 Pfam PF01063 Amino-transferase class IV 41 273 5.4E-51 T 17-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 VI35_00600 c23148b3c514f63860a9ef0e50e42aeb 314 Gene3D G3DSA:3.30.470.10 15 132 1.9E-102 T 17-10-2018 VI35_00600 c23148b3c514f63860a9ef0e50e42aeb 314 Gene3D G3DSA:3.20.10.10 143 294 1.9E-102 T 17-10-2018 VI35_00600 c23148b3c514f63860a9ef0e50e42aeb 314 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 15 312 5.4E-136 T 17-10-2018 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767 VI35_00600 c23148b3c514f63860a9ef0e50e42aeb 314 ProSitePatterns PS00770 Aminotransferases class-IV signature. 199 228 - T 17-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 VI35_00600 c23148b3c514f63860a9ef0e50e42aeb 314 SUPERFAMILY SSF56752 12 313 2.22E-103 T 17-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 VI35_07015 d774695370bfa3ce1caa3d9c8bf62a10 447 Gene3D G3DSA:3.40.50.10860 55 190 3.4E-167 T 17-10-2018 VI35_07015 d774695370bfa3ce1caa3d9c8bf62a10 447 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 122 135 - T 17-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 VI35_07015 d774695370bfa3ce1caa3d9c8bf62a10 447 Gene3D G3DSA:3.40.50.720 209 373 3.4E-167 T 17-10-2018 VI35_07015 d774695370bfa3ce1caa3d9c8bf62a10 447 PIRSF PIRSF000185 22 447 3.0E-114 T 17-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 VI35_07015 d774695370bfa3ce1caa3d9c8bf62a10 447 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 202 445 1.0E-85 T 17-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 VI35_07015 d774695370bfa3ce1caa3d9c8bf62a10 447 Gene3D G3DSA:1.10.285.10 396 447 7.4E-9 T 17-10-2018 VI35_07015 d774695370bfa3ce1caa3d9c8bf62a10 447 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 57 184 2.5E-50 T 17-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 VI35_07015 d774695370bfa3ce1caa3d9c8bf62a10 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 235 255 1.6E-32 T 17-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 VI35_07015 d774695370bfa3ce1caa3d9c8bf62a10 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 114 128 1.6E-32 T 17-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 VI35_07015 d774695370bfa3ce1caa3d9c8bf62a10 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 372 383 1.6E-32 T 17-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 VI35_07015 d774695370bfa3ce1caa3d9c8bf62a10 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 193 215 1.6E-32 T 17-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 VI35_07015 d774695370bfa3ce1caa3d9c8bf62a10 447 SUPERFAMILY SSF51735 202 446 7.13E-76 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_07015 d774695370bfa3ce1caa3d9c8bf62a10 447 SUPERFAMILY SSF53223 8 196 1.18E-72 T 17-10-2018 VI35_07015 d774695370bfa3ce1caa3d9c8bf62a10 447 SMART SM00839 204 445 1.4E-98 T 17-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 VI35_07015 d774695370bfa3ce1caa3d9c8bf62a10 447 Gene3D G3DSA:1.10.285.10 10 384 3.4E-167 T 17-10-2018 VI35_01905 007a62bdd8575a35b77926ac00dc5962 452 Pfam PF13365 Trypsin-like peptidase domain 92 227 1.2E-30 T 17-10-2018 VI35_01905 007a62bdd8575a35b77926ac00dc5962 452 Gene3D G3DSA:2.40.10.120 37 260 4.0E-85 T 17-10-2018 VI35_01905 007a62bdd8575a35b77926ac00dc5962 452 SUPERFAMILY SSF50156 248 357 5.19E-24 T 17-10-2018 IPR036034 PDZ superfamily GO:0005515 VI35_01905 007a62bdd8575a35b77926ac00dc5962 452 SUPERFAMILY SSF50494 22 275 4.16E-63 T 17-10-2018 IPR009003 Peptidase S1, PA clan VI35_01905 007a62bdd8575a35b77926ac00dc5962 452 SMART SM00228 266 348 1.1E-15 T 17-10-2018 IPR001478 PDZ domain GO:0005515 VI35_01905 007a62bdd8575a35b77926ac00dc5962 452 SMART SM00228 373 444 1.0E-9 T 17-10-2018 IPR001478 PDZ domain GO:0005515 VI35_01905 007a62bdd8575a35b77926ac00dc5962 452 Pfam PF13180 PDZ domain 267 357 1.4E-17 T 17-10-2018 IPR001478 PDZ domain GO:0005515 VI35_01905 007a62bdd8575a35b77926ac00dc5962 452 PRINTS PR00834 HtrA/DegQ protease family signature 123 143 1.6E-55 T 17-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VI35_01905 007a62bdd8575a35b77926ac00dc5962 452 PRINTS PR00834 HtrA/DegQ protease family signature 163 187 1.6E-55 T 17-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VI35_01905 007a62bdd8575a35b77926ac00dc5962 452 PRINTS PR00834 HtrA/DegQ protease family signature 220 237 1.6E-55 T 17-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VI35_01905 007a62bdd8575a35b77926ac00dc5962 452 PRINTS PR00834 HtrA/DegQ protease family signature 102 114 1.6E-55 T 17-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VI35_01905 007a62bdd8575a35b77926ac00dc5962 452 PRINTS PR00834 HtrA/DegQ protease family signature 198 215 1.6E-55 T 17-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VI35_01905 007a62bdd8575a35b77926ac00dc5962 452 PRINTS PR00834 HtrA/DegQ protease family signature 306 318 1.6E-55 T 17-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VI35_01905 007a62bdd8575a35b77926ac00dc5962 452 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 376 441 7.2E-12 T 17-10-2018 IPR001478 PDZ domain GO:0005515 VI35_01905 007a62bdd8575a35b77926ac00dc5962 452 Gene3D G3DSA:2.30.42.10 261 364 7.2E-30 T 17-10-2018 VI35_01905 007a62bdd8575a35b77926ac00dc5962 452 SUPERFAMILY SSF50156 380 448 6.97E-16 T 17-10-2018 IPR036034 PDZ superfamily GO:0005515 VI35_01905 007a62bdd8575a35b77926ac00dc5962 452 Gene3D G3DSA:2.30.42.10 365 452 1.6E-27 T 17-10-2018 VI35_01905 007a62bdd8575a35b77926ac00dc5962 452 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 39 450 1.6E-159 T 17-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 VI35_05225 a06be5508e904590f1d567feab8b347b 479 Gene3D G3DSA:3.30.565.10 332 479 9.7E-34 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_05225 a06be5508e904590f1d567feab8b347b 479 Pfam PF00512 His Kinase A (phospho-acceptor) domain 261 323 8.6E-8 T 17-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VI35_05225 a06be5508e904590f1d567feab8b347b 479 PRINTS PR00344 Bacterial sensor protein C-terminal signature 423 433 5.0E-10 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_05225 a06be5508e904590f1d567feab8b347b 479 PRINTS PR00344 Bacterial sensor protein C-terminal signature 405 419 5.0E-10 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_05225 a06be5508e904590f1d567feab8b347b 479 PRINTS PR00344 Bacterial sensor protein C-terminal signature 437 455 5.0E-10 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_05225 a06be5508e904590f1d567feab8b347b 479 PRINTS PR00344 Bacterial sensor protein C-terminal signature 461 474 5.0E-10 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_05225 a06be5508e904590f1d567feab8b347b 479 SMART SM00387 368 477 2.1E-28 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_05225 a06be5508e904590f1d567feab8b347b 479 SMART SM00388 259 324 8.7E-10 T 17-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VI35_05225 a06be5508e904590f1d567feab8b347b 479 Gene3D G3DSA:1.10.287.130 210 326 5.8E-15 T 17-10-2018 VI35_05225 a06be5508e904590f1d567feab8b347b 479 SUPERFAMILY SSF47384 242 324 3.92E-13 T 17-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VI35_05225 a06be5508e904590f1d567feab8b347b 479 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 372 475 9.3E-19 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_05225 a06be5508e904590f1d567feab8b347b 479 SUPERFAMILY SSF55874 314 475 4.32E-37 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_05225 a06be5508e904590f1d567feab8b347b 479 Pfam PF08521 Two-component sensor kinase N-terminal 109 181 4.9E-5 T 17-10-2018 IPR013727 Two-component sensor kinase, N-terminal VI35_16690 60660162b9ba2924b3df92ebc413cdc8 148 SUPERFAMILY SSF54197 1 133 2.55E-33 T 17-10-2018 IPR036265 HIT-like superfamily VI35_16690 60660162b9ba2924b3df92ebc413cdc8 148 PIRSF PIRSF000714 1 139 1.8E-52 T 17-10-2018 IPR026026 Histidine triad hydrolase, Hint-type VI35_16690 60660162b9ba2924b3df92ebc413cdc8 148 Gene3D G3DSA:3.30.428.10 1 144 5.2E-41 T 17-10-2018 IPR036265 HIT-like superfamily VI35_16690 60660162b9ba2924b3df92ebc413cdc8 148 Pfam PF01230 HIT domain 8 97 6.6E-15 T 17-10-2018 IPR001310 Histidine triad (HIT) protein VI35_10440 2e9019657e0ef7b735bc58ecb29605ac 46 Pfam PF09574 Protein of unknown function (Duf2374) 1 42 6.2E-24 T 17-10-2018 IPR014175 Conserved hypothetical protein CHP02808 VI35_10440 2e9019657e0ef7b735bc58ecb29605ac 46 TIGRFAM TIGR02808 short_TIGR02808: TIGR02808 family protein 1 42 1.2E-27 T 17-10-2018 IPR014175 Conserved hypothetical protein CHP02808 VI35_03875 7ed7087876533d5a3d225375180285ee 932 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 350 440 4.5E-26 T 17-10-2018 IPR010221 VCBS repeat VI35_03875 7ed7087876533d5a3d225375180285ee 932 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 674 764 3.0E-26 T 17-10-2018 IPR010221 VCBS repeat VI35_03875 7ed7087876533d5a3d225375180285ee 932 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 26 116 1.4E-25 T 17-10-2018 IPR010221 VCBS repeat VI35_03875 7ed7087876533d5a3d225375180285ee 932 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 782 872 3.0E-26 T 17-10-2018 IPR010221 VCBS repeat VI35_03875 7ed7087876533d5a3d225375180285ee 932 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 134 224 3.1E-26 T 17-10-2018 IPR010221 VCBS repeat VI35_03875 7ed7087876533d5a3d225375180285ee 932 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 890 927 9.7E-6 T 17-10-2018 IPR010221 VCBS repeat VI35_03875 7ed7087876533d5a3d225375180285ee 932 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 242 332 3.0E-26 T 17-10-2018 IPR010221 VCBS repeat VI35_03875 7ed7087876533d5a3d225375180285ee 932 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 566 656 4.5E-26 T 17-10-2018 IPR010221 VCBS repeat VI35_03875 7ed7087876533d5a3d225375180285ee 932 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 458 548 4.8E-25 T 17-10-2018 IPR010221 VCBS repeat VI35_11875 771c3e5ed00febcde08921568d24717c 526 Pfam PF02743 Cache domain 74 289 1.5E-16 T 17-10-2018 IPR033479 Double Cache domain 1 VI35_11875 771c3e5ed00febcde08921568d24717c 526 SUPERFAMILY SSF55073 377 524 2.9E-38 T 17-10-2018 IPR029787 Nucleotide cyclase VI35_11875 771c3e5ed00febcde08921568d24717c 526 Pfam PF00990 Diguanylate cyclase, GGDEF domain 373 521 2.4E-34 T 17-10-2018 IPR000160 GGDEF domain VI35_11875 771c3e5ed00febcde08921568d24717c 526 Gene3D G3DSA:3.30.70.270 359 525 1.9E-46 T 17-10-2018 VI35_11875 771c3e5ed00febcde08921568d24717c 526 Gene3D G3DSA:3.30.450.20 209 294 5.1E-13 T 17-10-2018 VI35_11875 771c3e5ed00febcde08921568d24717c 526 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 372 524 3.2E-34 T 17-10-2018 IPR000160 GGDEF domain VI35_11875 771c3e5ed00febcde08921568d24717c 526 SMART SM00267 362 525 2.3E-43 T 17-10-2018 IPR000160 GGDEF domain VI35_11875 771c3e5ed00febcde08921568d24717c 526 Gene3D G3DSA:3.30.450.20 119 208 5.1E-13 T 17-10-2018 VI35_08100 33708475253cab6fbc4008b4fe79e6c3 430 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 334 8.3E-64 T 17-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VI35_08100 33708475253cab6fbc4008b4fe79e6c3 430 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 168 193 1.7E-7 T 17-10-2018 VI35_08100 33708475253cab6fbc4008b4fe79e6c3 430 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 1.7E-7 T 17-10-2018 VI35_08100 33708475253cab6fbc4008b4fe79e6c3 430 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 306 313 1.7E-7 T 17-10-2018 VI35_08100 33708475253cab6fbc4008b4fe79e6c3 430 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 1.6E-12 T 17-10-2018 VI35_08100 33708475253cab6fbc4008b4fe79e6c3 430 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 168 186 1.6E-12 T 17-10-2018 VI35_08100 33708475253cab6fbc4008b4fe79e6c3 430 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 291 313 1.6E-12 T 17-10-2018 VI35_08100 33708475253cab6fbc4008b4fe79e6c3 430 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 111 129 1.6E-12 T 17-10-2018 VI35_08100 33708475253cab6fbc4008b4fe79e6c3 430 SUPERFAMILY SSF51905 2 337 1.84E-31 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_08100 33708475253cab6fbc4008b4fe79e6c3 430 Gene3D G3DSA:3.50.50.100 2 408 1.9E-115 T 17-10-2018 VI35_19990 37f6c67b4450c1334c791ebf1bee900a 230 Pfam PF07883 Cupin domain 8 71 1.9E-6 T 17-10-2018 IPR013096 Cupin 2, conserved barrel VI35_19990 37f6c67b4450c1334c791ebf1bee900a 230 Gene3D G3DSA:1.10.10.60 135 230 2.2E-16 T 17-10-2018 VI35_19990 37f6c67b4450c1334c791ebf1bee900a 230 SUPERFAMILY SSF46689 133 184 2.87E-6 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_19990 37f6c67b4450c1334c791ebf1bee900a 230 SUPERFAMILY SSF51182 4 72 5.58E-10 T 17-10-2018 IPR011051 RmlC-like cupin domain superfamily VI35_19990 37f6c67b4450c1334c791ebf1bee900a 230 SMART SM00342 150 225 2.7E-7 T 17-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VI35_19990 37f6c67b4450c1334c791ebf1bee900a 230 Gene3D G3DSA:2.60.120.10 1 81 7.4E-9 T 17-10-2018 IPR014710 RmlC-like jelly roll fold VI35_19990 37f6c67b4450c1334c791ebf1bee900a 230 Pfam PF12833 Helix-turn-helix domain 156 228 2.0E-15 T 17-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VI35_06730 2b5484bd6e8530639a16f36dcd82d56a 154 Hamap MF_00042 Ribonuclease H [rnhA]. 2 150 36.042 T 17-10-2018 IPR022892 Ribonuclease HI GO:0004523 VI35_06730 2b5484bd6e8530639a16f36dcd82d56a 154 SUPERFAMILY SSF53098 4 143 3.67E-57 T 17-10-2018 IPR012337 Ribonuclease H-like superfamily VI35_06730 2b5484bd6e8530639a16f36dcd82d56a 154 Pfam PF00075 RNase H 4 141 2.2E-50 T 17-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 VI35_06730 2b5484bd6e8530639a16f36dcd82d56a 154 Gene3D G3DSA:3.30.420.10 1 153 2.9E-57 T 17-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VI35_00045 801230fb44fde6472cf2396ba6c1d974 416 Gene3D G3DSA:3.40.640.10 1 415 1.6E-148 T 17-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VI35_00045 801230fb44fde6472cf2396ba6c1d974 416 SUPERFAMILY SSF53383 16 409 4.68E-60 T 17-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VI35_00045 801230fb44fde6472cf2396ba6c1d974 416 Pfam PF00155 Aminotransferase class I and II 65 399 5.1E-23 T 17-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 VI35_11705 81adf1f7331d159a454c6df6b7cfdbf7 321 Gene3D G3DSA:3.40.190.150 27 310 4.5E-60 T 17-10-2018 VI35_11705 81adf1f7331d159a454c6df6b7cfdbf7 321 SUPERFAMILY SSF53850 60 274 2.76E-11 T 17-10-2018 VI35_11705 81adf1f7331d159a454c6df6b7cfdbf7 321 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 60 318 9.4E-24 T 17-10-2018 IPR005064 Bordetella uptake gene GO:0030288 VI35_11705 81adf1f7331d159a454c6df6b7cfdbf7 321 Gene3D G3DSA:3.40.190.10 121 247 4.5E-60 T 17-10-2018 VI35_11705 81adf1f7331d159a454c6df6b7cfdbf7 321 PIRSF PIRSF017082 2 321 9.5E-84 T 17-10-2018 IPR005064 Bordetella uptake gene GO:0030288 VI35_00140 a0b2ba29ebe0c3b52b3c78242f670676 172 Pfam PF00652 Ricin-type beta-trefoil lectin domain 87 164 7.6E-7 T 17-10-2018 IPR000772 Ricin B, lectin domain VI35_00140 a0b2ba29ebe0c3b52b3c78242f670676 172 SMART SM00458 45 156 4.4E-9 T 17-10-2018 IPR000772 Ricin B, lectin domain VI35_00140 a0b2ba29ebe0c3b52b3c78242f670676 172 SUPERFAMILY SSF50370 50 157 1.37E-13 T 17-10-2018 IPR035992 Ricin B-like lectins VI35_00140 a0b2ba29ebe0c3b52b3c78242f670676 172 Gene3D G3DSA:2.80.10.50 41 122 5.6E-5 T 17-10-2018 VI35_00140 a0b2ba29ebe0c3b52b3c78242f670676 172 Gene3D G3DSA:2.80.10.50 123 170 3.1E-6 T 17-10-2018 VI35_06715 39eb2e7e659cad1674e32b6f4647ed51 513 Pfam PF01464 Transglycosylase SLT domain 121 218 7.3E-26 T 17-10-2018 IPR008258 Transglycosylase SLT domain 1 VI35_06715 39eb2e7e659cad1674e32b6f4647ed51 513 SUPERFAMILY SSF54106 407 452 1.44E-10 T 17-10-2018 VI35_06715 39eb2e7e659cad1674e32b6f4647ed51 513 Gene3D G3DSA:3.10.350.10 458 513 4.4E-15 T 17-10-2018 IPR036779 LysM domain superfamily VI35_06715 39eb2e7e659cad1674e32b6f4647ed51 513 SUPERFAMILY SSF54106 339 383 1.19E-10 T 17-10-2018 VI35_06715 39eb2e7e659cad1674e32b6f4647ed51 513 SMART SM00257 408 452 3.6E-12 T 17-10-2018 IPR018392 LysM domain VI35_06715 39eb2e7e659cad1674e32b6f4647ed51 513 SMART SM00257 340 383 2.1E-13 T 17-10-2018 IPR018392 LysM domain VI35_06715 39eb2e7e659cad1674e32b6f4647ed51 513 SMART SM00257 464 508 2.5E-12 T 17-10-2018 IPR018392 LysM domain VI35_06715 39eb2e7e659cad1674e32b6f4647ed51 513 SUPERFAMILY SSF53955 106 256 3.0E-42 T 17-10-2018 IPR023346 Lysozyme-like domain superfamily VI35_06715 39eb2e7e659cad1674e32b6f4647ed51 513 Gene3D G3DSA:1.10.530.10 104 258 1.6E-33 T 17-10-2018 VI35_06715 39eb2e7e659cad1674e32b6f4647ed51 513 Gene3D G3DSA:3.10.350.10 404 457 2.0E-15 T 17-10-2018 IPR036779 LysM domain superfamily VI35_06715 39eb2e7e659cad1674e32b6f4647ed51 513 Gene3D G3DSA:3.10.350.10 338 391 3.8E-16 T 17-10-2018 IPR036779 LysM domain superfamily VI35_06715 39eb2e7e659cad1674e32b6f4647ed51 513 Pfam PF01476 LysM domain 341 383 2.8E-12 T 17-10-2018 IPR018392 LysM domain VI35_06715 39eb2e7e659cad1674e32b6f4647ed51 513 Pfam PF01476 LysM domain 465 507 9.5E-12 T 17-10-2018 IPR018392 LysM domain VI35_06715 39eb2e7e659cad1674e32b6f4647ed51 513 Pfam PF01476 LysM domain 409 451 9.0E-12 T 17-10-2018 IPR018392 LysM domain VI35_06715 39eb2e7e659cad1674e32b6f4647ed51 513 SUPERFAMILY SSF54106 463 507 2.35E-10 T 17-10-2018 VI35_06715 39eb2e7e659cad1674e32b6f4647ed51 513 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 128 156 - T 17-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 VI35_21150 7c03676eb517d47b96190c1be751548e 130 Pfam PF03899 ATP synthase I chain 16 113 1.4E-13 T 17-10-2018 IPR005598 ATP synthase protein I VI35_07040 ead63795131aff7fbba251d0c6201a67 155 Gene3D G3DSA:3.20.80.10 4 152 1.4E-24 T 17-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily VI35_07040 ead63795131aff7fbba251d0c6201a67 155 Pfam PF06445 GyrI-like small molecule binding domain 5 148 9.2E-17 T 17-10-2018 IPR029442 GyrI-like small molecule binding domain VI35_07040 ead63795131aff7fbba251d0c6201a67 155 SMART SM00871 3 149 9.2E-17 T 17-10-2018 IPR010499 Bacterial transcription activator, effector binding VI35_07040 ead63795131aff7fbba251d0c6201a67 155 SUPERFAMILY SSF55136 5 151 1.62E-19 T 17-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily VI35_20215 42651a39a0f02ad96ed02e2ca9730ceb 498 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 295 306 - T 17-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 VI35_20215 42651a39a0f02ad96ed02e2ca9730ceb 498 SUPERFAMILY SSF53720 9 496 3.67E-166 T 17-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 VI35_20215 42651a39a0f02ad96ed02e2ca9730ceb 498 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 266 273 - T 17-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 VI35_20215 42651a39a0f02ad96ed02e2ca9730ceb 498 Gene3D G3DSA:3.40.309.10 271 463 3.6E-176 T 17-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 VI35_20215 42651a39a0f02ad96ed02e2ca9730ceb 498 Gene3D G3DSA:3.40.605.10 24 491 3.6E-176 T 17-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 VI35_20215 42651a39a0f02ad96ed02e2ca9730ceb 498 Pfam PF00171 Aldehyde dehydrogenase family 33 492 3.9E-171 T 17-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 VI35_16540 a1ad784287d7640d863a5386a79303ab 456 Pfam PF07670 Nucleoside recognition 142 237 1.5E-7 T 17-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 VI35_03310 de0da9178bd3d7112d11de14b4cf8aab 245 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 6 238 9.9E-104 T 17-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 VI35_03310 de0da9178bd3d7112d11de14b4cf8aab 245 SUPERFAMILY SSF63892 4 242 4.97E-101 T 17-10-2018 IPR036130 Pyridoxine 5'-phosphate synthase GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 VI35_03310 de0da9178bd3d7112d11de14b4cf8aab 245 Gene3D G3DSA:3.20.20.70 1 243 1.3E-107 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_03310 de0da9178bd3d7112d11de14b4cf8aab 245 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 6 239 4.0E-102 T 17-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 VI35_03310 de0da9178bd3d7112d11de14b4cf8aab 245 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 243 133.588 T 17-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 VI35_11840 28edf8a3e94c2fe70c835a95b137ac81 643 Gene3D G3DSA:2.30.40.10 39 612 1.0E-94 T 17-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VI35_11840 28edf8a3e94c2fe70c835a95b137ac81 643 SUPERFAMILY SSF51556 91 596 6.81E-21 T 17-10-2018 IPR032466 Metal-dependent hydrolase VI35_11840 28edf8a3e94c2fe70c835a95b137ac81 643 Gene3D G3DSA:3.20.20.140 92 595 1.0E-94 T 17-10-2018 VI35_11840 28edf8a3e94c2fe70c835a95b137ac81 643 Gene3D G3DSA:3.10.310.70 109 250 1.0E-94 T 17-10-2018 VI35_11840 28edf8a3e94c2fe70c835a95b137ac81 643 Pfam PF07969 Amidohydrolase family 80 640 4.2E-61 T 17-10-2018 IPR013108 Amidohydrolase 3 VI35_11840 28edf8a3e94c2fe70c835a95b137ac81 643 SUPERFAMILY SSF51338 31 642 1.2E-19 T 17-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VI35_12715 c93e8b087ae31b12c06a1270b2dd5963 530 Gene3D G3DSA:3.40.190.10 112 211 7.6E-67 T 17-10-2018 VI35_12715 c93e8b087ae31b12c06a1270b2dd5963 530 SUPERFAMILY SSF53850 29 261 2.96E-32 T 17-10-2018 VI35_12715 c93e8b087ae31b12c06a1270b2dd5963 530 Pfam PF09084 NMT1/THI5 like 41 250 2.1E-49 T 17-10-2018 IPR015168 SsuA/THI5-like VI35_12715 c93e8b087ae31b12c06a1270b2dd5963 530 SMART SM00267 362 527 6.9E-48 T 17-10-2018 IPR000160 GGDEF domain VI35_12715 c93e8b087ae31b12c06a1270b2dd5963 530 Gene3D G3DSA:3.30.70.270 357 524 2.5E-46 T 17-10-2018 VI35_12715 c93e8b087ae31b12c06a1270b2dd5963 530 SUPERFAMILY SSF55073 378 519 3.92E-42 T 17-10-2018 IPR029787 Nucleotide cyclase VI35_12715 c93e8b087ae31b12c06a1270b2dd5963 530 Gene3D G3DSA:3.40.190.10 34 298 7.6E-67 T 17-10-2018 VI35_12715 c93e8b087ae31b12c06a1270b2dd5963 530 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 372 518 4.0E-31 T 17-10-2018 IPR000160 GGDEF domain VI35_12715 c93e8b087ae31b12c06a1270b2dd5963 530 Pfam PF00990 Diguanylate cyclase, GGDEF domain 373 518 2.4E-38 T 17-10-2018 IPR000160 GGDEF domain VI35_12700 c82e6a5ca009817a4738bc2cc78208d0 384 PIRSF PIRSF009283 2 362 8.3E-120 T 17-10-2018 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 VI35_12700 c82e6a5ca009817a4738bc2cc78208d0 384 Pfam PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal 12 150 5.4E-57 T 17-10-2018 VI35_12700 c82e6a5ca009817a4738bc2cc78208d0 384 SUPERFAMILY SSF54593 10 348 1.03E-75 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_12700 c82e6a5ca009817a4738bc2cc78208d0 384 Gene3D G3DSA:3.10.180.10 8 162 7.1E-46 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_12700 c82e6a5ca009817a4738bc2cc78208d0 384 Gene3D G3DSA:3.10.180.10 165 362 4.6E-66 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_12700 c82e6a5ca009817a4738bc2cc78208d0 384 TIGRFAM TIGR01263 4HPPD: 4-hydroxyphenylpyruvate dioxygenase 18 361 3.3E-127 T 17-10-2018 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 VI35_12700 c82e6a5ca009817a4738bc2cc78208d0 384 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 170 281 1.2E-12 T 17-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VI35_03765 2b738e6064b5eb41dc0cb71949925399 210 Pfam PF01810 LysE type translocator 16 209 2.3E-39 T 17-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VI35_03765 2b738e6064b5eb41dc0cb71949925399 210 PIRSF PIRSF006324 1 210 2.1E-54 T 17-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VI35_06720 9d54799a4eaab446ea0bf370aa5401f6 254 Pfam PF00753 Metallo-beta-lactamase superfamily 14 166 1.3E-19 T 17-10-2018 IPR001279 Metallo-beta-lactamase VI35_06720 9d54799a4eaab446ea0bf370aa5401f6 254 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 167 254 6.5E-23 T 17-10-2018 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 VI35_06720 9d54799a4eaab446ea0bf370aa5401f6 254 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 4 254 1.1E-100 T 17-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 VI35_06720 9d54799a4eaab446ea0bf370aa5401f6 254 PIRSF PIRSF005457 1 254 1.2E-92 T 17-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 VI35_06720 9d54799a4eaab446ea0bf370aa5401f6 254 SMART SM00849 12 166 3.8E-33 T 17-10-2018 IPR001279 Metallo-beta-lactamase VI35_06720 9d54799a4eaab446ea0bf370aa5401f6 254 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 2 254 43.992 T 17-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 VI35_06720 9d54799a4eaab446ea0bf370aa5401f6 254 SUPERFAMILY SSF56281 4 254 6.94E-67 T 17-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VI35_06720 9d54799a4eaab446ea0bf370aa5401f6 254 Gene3D G3DSA:3.60.15.10 1 254 4.7E-91 T 17-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VI35_00590 2d89c74c1858160d1c8d571b44744a5a 548 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 374 522 4.0E-48 T 17-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 VI35_00590 2d89c74c1858160d1c8d571b44744a5a 548 SUPERFAMILY SSF52518 1 176 1.43E-62 T 17-10-2018 IPR029061 Thiamin diphosphate-binding fold VI35_00590 2d89c74c1858160d1c8d571b44744a5a 548 Gene3D G3DSA:3.40.50.1220 189 343 5.4E-120 T 17-10-2018 VI35_00590 2d89c74c1858160d1c8d571b44744a5a 548 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 189 321 4.5E-43 T 17-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 VI35_00590 2d89c74c1858160d1c8d571b44744a5a 548 Gene3D G3DSA:3.40.50.970 1 179 7.5E-69 T 17-10-2018 VI35_00590 2d89c74c1858160d1c8d571b44744a5a 548 Gene3D G3DSA:3.40.50.970 344 522 5.4E-120 T 17-10-2018 VI35_00590 2d89c74c1858160d1c8d571b44744a5a 548 SUPERFAMILY SSF52467 182 341 3.6E-55 T 17-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily VI35_00590 2d89c74c1858160d1c8d571b44744a5a 548 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 411 430 - T 17-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 VI35_00590 2d89c74c1858160d1c8d571b44744a5a 548 SUPERFAMILY SSF52518 356 545 1.6E-62 T 17-10-2018 IPR029061 Thiamin diphosphate-binding fold VI35_00590 2d89c74c1858160d1c8d571b44744a5a 548 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 1 546 1.1E-210 T 17-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 VI35_00590 2d89c74c1858160d1c8d571b44744a5a 548 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 1 168 7.3E-57 T 17-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 VI35_05985 0f8c040c07ed643fc7b007bcb6145487 371 Pfam PF00072 Response regulator receiver domain 5 109 2.1E-22 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_05985 0f8c040c07ed643fc7b007bcb6145487 371 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 3 370 39.351 T 17-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 VI35_05985 0f8c040c07ed643fc7b007bcb6145487 371 SMART SM00448 3 126 7.5E-24 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_05985 0f8c040c07ed643fc7b007bcb6145487 371 Pfam PF01339 CheB methylesterase 186 365 2.6E-60 T 17-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 VI35_05985 0f8c040c07ed643fc7b007bcb6145487 371 SUPERFAMILY SSF52172 3 109 2.42E-26 T 17-10-2018 IPR011006 CheY-like superfamily VI35_05985 0f8c040c07ed643fc7b007bcb6145487 371 SUPERFAMILY SSF52738 181 366 1.05E-64 T 17-10-2018 IPR035909 Methylesterase CheB, C-terminal VI35_05985 0f8c040c07ed643fc7b007bcb6145487 371 PIRSF PIRSF000876 1 371 1.7E-129 T 17-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 VI35_05985 0f8c040c07ed643fc7b007bcb6145487 371 Gene3D G3DSA:3.40.50.180 177 370 3.5E-67 T 17-10-2018 IPR035909 Methylesterase CheB, C-terminal VI35_05985 0f8c040c07ed643fc7b007bcb6145487 371 Gene3D G3DSA:3.40.50.2300 2 132 7.6E-31 T 17-10-2018 VI35_18785 4148d0e357a85b6fed883dac51ac7c09 422 Gene3D G3DSA:3.40.50.720 42 245 4.9E-78 T 17-10-2018 VI35_18785 4148d0e357a85b6fed883dac51ac7c09 422 SUPERFAMILY SSF51735 42 242 1.14E-42 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_18785 4148d0e357a85b6fed883dac51ac7c09 422 PRINTS PR00084 Mannitol dehydrogenase signature 210 225 3.9E-17 T 17-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 VI35_18785 4148d0e357a85b6fed883dac51ac7c09 422 PRINTS PR00084 Mannitol dehydrogenase signature 191 204 3.9E-17 T 17-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 VI35_18785 4148d0e357a85b6fed883dac51ac7c09 422 PRINTS PR00084 Mannitol dehydrogenase signature 44 54 3.9E-17 T 17-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 VI35_18785 4148d0e357a85b6fed883dac51ac7c09 422 PRINTS PR00084 Mannitol dehydrogenase signature 155 168 3.9E-17 T 17-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 VI35_18785 4148d0e357a85b6fed883dac51ac7c09 422 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 190 411 7.3E-58 T 17-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 VI35_18785 4148d0e357a85b6fed883dac51ac7c09 422 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 191 203 - T 17-10-2018 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 VI35_18785 4148d0e357a85b6fed883dac51ac7c09 422 Hamap MF_00196 Mannitol-1-phosphate 5-dehydrogenase [mtlD]. 42 418 41.05 T 17-10-2018 IPR023028 Mannitol-1-phosphate 5-dehydrogenase GO:0008926|GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 VI35_18785 4148d0e357a85b6fed883dac51ac7c09 422 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 42 164 3.8E-24 T 17-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 VI35_18785 4148d0e357a85b6fed883dac51ac7c09 422 SUPERFAMILY SSF48179 244 421 2.45E-46 T 17-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VI35_18785 4148d0e357a85b6fed883dac51ac7c09 422 Gene3D G3DSA:1.10.1040.10 247 422 6.7E-69 T 17-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 VI35_09530 6d085eb58af8d75dd28ece8c06d4ecb7 279 Gene3D G3DSA:3.40.50.1000 16 279 1.2E-96 T 17-10-2018 IPR023214 HAD superfamily VI35_09530 6d085eb58af8d75dd28ece8c06d4ecb7 279 SUPERFAMILY SSF56784 14 269 4.48E-51 T 17-10-2018 IPR036412 HAD-like superfamily VI35_09530 6d085eb58af8d75dd28ece8c06d4ecb7 279 TIGRFAM TIGR01422 phosphonatase: phosphonoacetaldehyde hydrolase 14 267 4.0E-105 T 17-10-2018 IPR006323 Phosphonoacetaldehyde hydrolase GO:0019700|GO:0050194 KEGG: 00440+3.11.1.1 VI35_09530 6d085eb58af8d75dd28ece8c06d4ecb7 279 Hamap MF_01375 Phosphonoacetaldehyde hydrolase [phnX]. 1 279 132.976 T 17-10-2018 IPR006323 Phosphonoacetaldehyde hydrolase GO:0019700|GO:0050194 KEGG: 00440+3.11.1.1 VI35_09530 6d085eb58af8d75dd28ece8c06d4ecb7 279 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 82 213 1.1E-12 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_09530 6d085eb58af8d75dd28ece8c06d4ecb7 279 Gene3D G3DSA:1.10.150.240 32 110 1.2E-96 T 17-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 VI35_20300 e02d250975c5de6798970e599cd99615 723 Gene3D G3DSA:3.40.50.300 281 636 1.6E-130 T 17-10-2018 VI35_20300 e02d250975c5de6798970e599cd99615 723 TIGRFAM TIGR01075 uvrD: DNA helicase II 6 721 0.0 T 17-10-2018 IPR005753 DNA helicase, ATP-dependent, UvrD type GO:0004003|GO:0005737|GO:0006268 VI35_20300 e02d250975c5de6798970e599cd99615 723 Pfam PF00580 UvrD/REP helicase N-terminal domain 10 271 1.5E-71 T 17-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 VI35_20300 e02d250975c5de6798970e599cd99615 723 SUPERFAMILY SSF52540 6 642 1.63E-177 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_20300 e02d250975c5de6798970e599cd99615 723 Gene3D G3DSA:3.40.50.300 10 273 1.2E-98 T 17-10-2018 VI35_20300 e02d250975c5de6798970e599cd99615 723 Gene3D G3DSA:1.10.486.10 382 538 1.6E-130 T 17-10-2018 VI35_20300 e02d250975c5de6798970e599cd99615 723 Gene3D G3DSA:1.10.10.160 114 187 1.2E-98 T 17-10-2018 IPR013986 DExx box DNA helicase domain superfamily VI35_20300 e02d250975c5de6798970e599cd99615 723 Pfam PF13361 UvrD-like helicase C-terminal domain 277 616 4.1E-76 T 17-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 VI35_00280 739e6c7ad09bdb3bcf66c15d887147e5 219 SUPERFAMILY SSF49354 19 120 8.9E-8 T 17-10-2018 IPR008962 PapD-like superfamily VI35_00280 739e6c7ad09bdb3bcf66c15d887147e5 219 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 20 115 7.7E-6 T 17-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 VI35_00280 739e6c7ad09bdb3bcf66c15d887147e5 219 Gene3D G3DSA:2.60.40.10 20 143 6.0E-9 T 17-10-2018 IPR013783 Immunoglobulin-like fold VI35_03685 2031042cd2582c5ef2ae0321d8920015 133 SUPERFAMILY SSF54593 3 130 2.01E-33 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_03685 2031042cd2582c5ef2ae0321d8920015 133 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 128 9.0E-22 T 17-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VI35_03685 2031042cd2582c5ef2ae0321d8920015 133 Gene3D G3DSA:3.10.180.10 11 130 6.7E-34 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_01850 2830ff8d5a63278390556f63f3cf55e4 90 Pfam PF00381 PTS HPr component phosphorylation site 4 84 3.6E-23 T 17-10-2018 IPR000032 Phosphocarrier protein HPr-like VI35_01850 2830ff8d5a63278390556f63f3cf55e4 90 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 14 21 - T 17-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site VI35_01850 2830ff8d5a63278390556f63f3cf55e4 90 Gene3D G3DSA:3.30.1340.10 1 85 2.5E-29 T 17-10-2018 IPR035895 HPr-like superfamily VI35_01850 2830ff8d5a63278390556f63f3cf55e4 90 SUPERFAMILY SSF55594 4 90 9.68E-24 T 17-10-2018 IPR035895 HPr-like superfamily VI35_01850 2830ff8d5a63278390556f63f3cf55e4 90 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 4 83 1.6E-22 T 17-10-2018 IPR000032 Phosphocarrier protein HPr-like VI35_01850 2830ff8d5a63278390556f63f3cf55e4 90 PRINTS PR00107 Phosphocarrier protein signature 40 55 1.8E-10 T 17-10-2018 IPR000032 Phosphocarrier protein HPr-like VI35_01850 2830ff8d5a63278390556f63f3cf55e4 90 PRINTS PR00107 Phosphocarrier protein signature 14 30 1.8E-10 T 17-10-2018 IPR000032 Phosphocarrier protein HPr-like VI35_01850 2830ff8d5a63278390556f63f3cf55e4 90 PRINTS PR00107 Phosphocarrier protein signature 55 72 1.8E-10 T 17-10-2018 IPR000032 Phosphocarrier protein HPr-like VI35_01850 2830ff8d5a63278390556f63f3cf55e4 90 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 41 56 - T 17-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site VI35_17395 de3d1d120a1fd3a278035e8e261693d3 574 Gene3D G3DSA:3.30.930.10 11 467 7.6E-245 T 17-10-2018 VI35_17395 de3d1d120a1fd3a278035e8e261693d3 574 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 569 1.4E-250 T 17-10-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 VI35_17395 de3d1d120a1fd3a278035e8e261693d3 574 PIRSF PIRSF001535 1 574 1.5E-274 T 17-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 VI35_17395 de3d1d120a1fd3a278035e8e261693d3 574 Pfam PF04073 Aminoacyl-tRNA editing domain 257 378 1.0E-27 T 17-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 VI35_17395 de3d1d120a1fd3a278035e8e261693d3 574 Pfam PF03129 Anticodon binding domain 477 570 7.0E-22 T 17-10-2018 IPR004154 Anticodon-binding VI35_17395 de3d1d120a1fd3a278035e8e261693d3 574 SUPERFAMILY SSF55826 218 392 8.11E-34 T 17-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 VI35_17395 de3d1d120a1fd3a278035e8e261693d3 574 Gene3D G3DSA:3.90.960.10 240 391 7.6E-245 T 17-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 VI35_17395 de3d1d120a1fd3a278035e8e261693d3 574 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 573 42.593 T 17-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 VI35_17395 de3d1d120a1fd3a278035e8e261693d3 574 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 1.9E-19 T 17-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 VI35_17395 de3d1d120a1fd3a278035e8e261693d3 574 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 1.9E-19 T 17-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 VI35_17395 de3d1d120a1fd3a278035e8e261693d3 574 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 1.9E-19 T 17-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 VI35_17395 de3d1d120a1fd3a278035e8e261693d3 574 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 1.9E-19 T 17-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 VI35_17395 de3d1d120a1fd3a278035e8e261693d3 574 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 461 8.2E-48 T 17-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 VI35_17395 de3d1d120a1fd3a278035e8e261693d3 574 SUPERFAMILY SSF52954 465 572 3.78E-34 T 17-10-2018 VI35_17395 de3d1d120a1fd3a278035e8e261693d3 574 Gene3D G3DSA:3.40.50.800 4 557 7.6E-245 T 17-10-2018 IPR036621 Anticodon-binding domain superfamily VI35_17395 de3d1d120a1fd3a278035e8e261693d3 574 SUPERFAMILY SSF55681 10 480 1.55E-107 T 17-10-2018 VI35_09975 ef3a0b3e6070c9d60c2872f3a9087ca4 269 Gene3D G3DSA:3.40.390.10 147 264 9.5E-39 T 17-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 VI35_09975 ef3a0b3e6070c9d60c2872f3a9087ca4 269 Pfam PF06167 Glucose-regulated metallo-peptidase M90 22 247 9.9E-77 T 17-10-2018 IPR010384 MtfA family VI35_09975 ef3a0b3e6070c9d60c2872f3a9087ca4 269 Gene3D G3DSA:1.10.472.150 22 146 8.0E-37 T 17-10-2018 VI35_09975 ef3a0b3e6070c9d60c2872f3a9087ca4 269 SUPERFAMILY SSF55486 42 250 1.32E-34 T 17-10-2018 VI35_05825 19979531fd3b3927ef2bf3af08ff77c6 340 SMART SM00382 36 234 1.5E-12 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_05825 19979531fd3b3927ef2bf3af08ff77c6 340 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 300 3.6E-16 T 17-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VI35_05825 19979531fd3b3927ef2bf3af08ff77c6 340 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 235 320 2.8E-21 T 17-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VI35_05825 19979531fd3b3927ef2bf3af08ff77c6 340 SUPERFAMILY SSF52540 7 255 9.53E-61 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_05825 19979531fd3b3927ef2bf3af08ff77c6 340 Pfam PF00005 ABC transporter 28 184 3.1E-26 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_05825 19979531fd3b3927ef2bf3af08ff77c6 340 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_05825 19979531fd3b3927ef2bf3af08ff77c6 340 Gene3D G3DSA:3.40.50.300 5 331 3.2E-92 T 17-10-2018 VI35_16795 24db7d7eae3716619aaa6a64f7305903 361 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 246 265 - T 17-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 VI35_16795 24db7d7eae3716619aaa6a64f7305903 361 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 4 361 50.557 T 17-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 VI35_16795 24db7d7eae3716619aaa6a64f7305903 361 SUPERFAMILY SSF53659 2 361 1.67E-121 T 17-10-2018 VI35_16795 24db7d7eae3716619aaa6a64f7305903 361 SMART SM01329 5 357 2.9E-196 T 17-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 VI35_16795 24db7d7eae3716619aaa6a64f7305903 361 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 6 356 4.6E-133 T 17-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 VI35_16795 24db7d7eae3716619aaa6a64f7305903 361 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 5 346 7.4E-164 T 17-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 VI35_16795 24db7d7eae3716619aaa6a64f7305903 361 Gene3D G3DSA:3.40.718.10 1 361 4.5E-156 T 17-10-2018 VI35_06040 43bec8515c64107efe7c246a485b3f63 163 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 2 148 31.424 T 17-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 VI35_06040 43bec8515c64107efe7c246a485b3f63 163 Pfam PF03100 CcmE 4 138 1.3E-43 T 17-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 VI35_06040 43bec8515c64107efe7c246a485b3f63 163 SUPERFAMILY SSF82093 30 143 3.66E-38 T 17-10-2018 IPR036127 CcmE-like superfamily GO:0005886|GO:0017003|GO:0017004 VI35_06040 43bec8515c64107efe7c246a485b3f63 163 Gene3D G3DSA:2.40.50.140 30 144 1.2E-39 T 17-10-2018 VI35_20330 13ecf0ebd8755bca9da75e32edb20c3a 375 Gene3D G3DSA:3.90.180.10 12 370 1.9E-159 T 17-10-2018 VI35_20330 13ecf0ebd8755bca9da75e32edb20c3a 375 SUPERFAMILY SSF50129 325 375 1.79E-13 T 17-10-2018 IPR011032 GroES-like superfamily VI35_20330 13ecf0ebd8755bca9da75e32edb20c3a 375 SUPERFAMILY SSF50129 5 191 1.98E-77 T 17-10-2018 IPR011032 GroES-like superfamily VI35_20330 13ecf0ebd8755bca9da75e32edb20c3a 375 SMART SM00829 18 373 9.3E-4 T 17-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 VI35_20330 13ecf0ebd8755bca9da75e32edb20c3a 375 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 34 160 2.6E-26 T 17-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 VI35_20330 13ecf0ebd8755bca9da75e32edb20c3a 375 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 8 375 1.0E-227 T 17-10-2018 IPR014183 Alcohol dehydrogenase class III GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00680+1.1.1.284|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396|MetaCyc: PWY-7798|Reactome: R-HSA-71384 VI35_20330 13ecf0ebd8755bca9da75e32edb20c3a 375 Pfam PF00107 Zinc-binding dehydrogenase 203 334 2.5E-25 T 17-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 VI35_20330 13ecf0ebd8755bca9da75e32edb20c3a 375 Gene3D G3DSA:3.40.50.720 180 318 1.9E-159 T 17-10-2018 VI35_20330 13ecf0ebd8755bca9da75e32edb20c3a 375 SUPERFAMILY SSF51735 166 340 4.51E-49 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_20330 13ecf0ebd8755bca9da75e32edb20c3a 375 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 67 81 - T 17-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 VI35_09260 3018f22e95114d9fa4f9cd234611ce61 399 SUPERFAMILY SSF51445 39 398 3.76E-104 T 17-10-2018 IPR017853 Glycoside hydrolase superfamily VI35_09260 3018f22e95114d9fa4f9cd234611ce61 399 Gene3D G3DSA:3.20.20.80 23 399 6.8E-154 T 17-10-2018 VI35_09260 3018f22e95114d9fa4f9cd234611ce61 399 Pfam PF07745 Glycosyl hydrolase family 53 42 398 3.4E-128 T 17-10-2018 IPR011683 Glycosyl hydrolase family 53 GO:0015926 VI35_14725 02b399dcff7736847fc62692a43305d3 1251 SUPERFAMILY SSF52540 13 1230 6.79E-24 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_14725 02b399dcff7736847fc62692a43305d3 1251 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1152 1208 3.1E-11 T 17-10-2018 VI35_14725 02b399dcff7736847fc62692a43305d3 1251 Gene3D G3DSA:3.40.50.300 1 274 9.2E-36 T 17-10-2018 VI35_14725 02b399dcff7736847fc62692a43305d3 1251 Pfam PF13476 AAA domain 5 223 2.4E-25 T 17-10-2018 IPR038729 Rad50/SbcC-type AAA domain VI35_14725 02b399dcff7736847fc62692a43305d3 1251 Gene3D G3DSA:3.40.50.300 1034 1249 3.3E-23 T 17-10-2018 VI35_02340 348f93eeefaa29c5d7369ba04fe0e5b3 156 Pfam PF13975 gag-polyprotein putative aspartyl protease 51 139 3.8E-20 T 17-10-2018 VI35_02340 348f93eeefaa29c5d7369ba04fe0e5b3 156 SUPERFAMILY SSF50630 41 142 3.34E-14 T 17-10-2018 IPR021109 Aspartic peptidase domain superfamily VI35_02340 348f93eeefaa29c5d7369ba04fe0e5b3 156 ProSitePatterns PS00141 Eukaryotic and viral aspartyl proteases active site. 61 72 - T 17-10-2018 IPR001969 Aspartic peptidase, active site GO:0004190|GO:0006508 VI35_02340 348f93eeefaa29c5d7369ba04fe0e5b3 156 Gene3D G3DSA:2.40.70.10 31 153 1.3E-26 T 17-10-2018 IPR021109 Aspartic peptidase domain superfamily VI35_02340 348f93eeefaa29c5d7369ba04fe0e5b3 156 TIGRFAM TIGR02281 clan_AA_DTGA: clan AA aspartic protease, TIGR02281 family 40 152 3.4E-22 T 17-10-2018 IPR011969 Clan AA aspartic peptidase, C-terminal VI35_14175 a0f4b9bc11b7b60b10a371b6c01b6e0b 140 SMART SM00347 22 122 3.8E-17 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_14175 a0f4b9bc11b7b60b10a371b6c01b6e0b 140 SUPERFAMILY SSF46785 3 137 1.12E-27 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_14175 a0f4b9bc11b7b60b10a371b6c01b6e0b 140 PRINTS PR00598 Bacterial regulatory protein MarR family signature 63 78 1.9E-6 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_14175 a0f4b9bc11b7b60b10a371b6c01b6e0b 140 PRINTS PR00598 Bacterial regulatory protein MarR family signature 82 98 1.9E-6 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_14175 a0f4b9bc11b7b60b10a371b6c01b6e0b 140 PRINTS PR00598 Bacterial regulatory protein MarR family signature 112 132 1.9E-6 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_14175 a0f4b9bc11b7b60b10a371b6c01b6e0b 140 Gene3D G3DSA:1.10.10.10 4 133 1.8E-29 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_14175 a0f4b9bc11b7b60b10a371b6c01b6e0b 140 Pfam PF01047 MarR family 29 87 8.6E-15 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_09560 28e968980b32429972ba9c593f5a0aa6 104 Gene3D G3DSA:1.10.3730.20 1 104 2.2E-34 T 17-10-2018 VI35_09560 28e968980b32429972ba9c593f5a0aa6 104 Pfam PF00893 Small Multidrug Resistance protein 1 93 3.1E-30 T 17-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 VI35_09560 28e968980b32429972ba9c593f5a0aa6 104 SUPERFAMILY SSF103481 5 102 2.62E-20 T 17-10-2018 VI35_11600 04d612248eda205180816a1e5a726863 65 Pfam PF14056 Domain of unknown function (DUF4250) 10 61 5.5E-20 T 17-10-2018 IPR025346 Protein of unknown function DUF4250 VI35_17465 9349e806f4452d493b0bf45c3dd7e4e8 807 Gene3D G3DSA:3.40.50.1000 487 752 5.4E-81 T 17-10-2018 IPR023214 HAD superfamily VI35_17465 9349e806f4452d493b0bf45c3dd7e4e8 807 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 701 717 7.7E-7 T 17-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 VI35_17465 9349e806f4452d493b0bf45c3dd7e4e8 807 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 732 757 7.7E-7 T 17-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 VI35_17465 9349e806f4452d493b0bf45c3dd7e4e8 807 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 550 568 7.7E-7 T 17-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 VI35_17465 9349e806f4452d493b0bf45c3dd7e4e8 807 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 275 780 2.1E-68 T 17-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 VI35_17465 9349e806f4452d493b0bf45c3dd7e4e8 807 Pfam PF00403 Heavy-metal-associated domain 113 159 4.3E-9 T 17-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 VI35_17465 9349e806f4452d493b0bf45c3dd7e4e8 807 ProSitePatterns PS01047 Heavy-metal-associated domain. 113 142 - T 17-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 VI35_17465 9349e806f4452d493b0bf45c3dd7e4e8 807 Gene3D G3DSA:3.30.70.100 110 172 3.8E-14 T 17-10-2018 VI35_17465 9349e806f4452d493b0bf45c3dd7e4e8 807 SUPERFAMILY SSF81665 254 799 2.62E-18 T 17-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 VI35_17465 9349e806f4452d493b0bf45c3dd7e4e8 807 Gene3D G3DSA:2.70.150.20 301 410 4.1E-28 T 17-10-2018 VI35_17465 9349e806f4452d493b0bf45c3dd7e4e8 807 SUPERFAMILY SSF55008 104 171 1.57E-14 T 17-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 VI35_17465 9349e806f4452d493b0bf45c3dd7e4e8 807 Pfam PF00122 E1-E2 ATPase 304 485 5.6E-44 T 17-10-2018 VI35_17465 9349e806f4452d493b0bf45c3dd7e4e8 807 Pfam PF00702 haloacid dehalogenase-like hydrolase 502 714 2.4E-40 T 17-10-2018 VI35_17465 9349e806f4452d493b0bf45c3dd7e4e8 807 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 508 514 - T 17-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 VI35_17465 9349e806f4452d493b0bf45c3dd7e4e8 807 SUPERFAMILY SSF81653 315 405 7.06E-18 T 17-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 VI35_17465 9349e806f4452d493b0bf45c3dd7e4e8 807 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 251 803 1.0E-168 T 17-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 VI35_17465 9349e806f4452d493b0bf45c3dd7e4e8 807 SUPERFAMILY SSF56784 504 801 7.15E-48 T 17-10-2018 IPR036412 HAD-like superfamily VI35_17465 9349e806f4452d493b0bf45c3dd7e4e8 807 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 355 369 8.3E-28 T 17-10-2018 VI35_17465 9349e806f4452d493b0bf45c3dd7e4e8 807 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 650 660 8.3E-28 T 17-10-2018 VI35_17465 9349e806f4452d493b0bf45c3dd7e4e8 807 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 724 736 8.3E-28 T 17-10-2018 VI35_17465 9349e806f4452d493b0bf45c3dd7e4e8 807 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 506 520 8.3E-28 T 17-10-2018 VI35_17465 9349e806f4452d493b0bf45c3dd7e4e8 807 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 701 720 8.3E-28 T 17-10-2018 VI35_17465 9349e806f4452d493b0bf45c3dd7e4e8 807 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 628 639 8.3E-28 T 17-10-2018 VI35_17465 9349e806f4452d493b0bf45c3dd7e4e8 807 Gene3D G3DSA:3.40.1110.10 517 635 5.4E-81 T 17-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 VI35_17465 9349e806f4452d493b0bf45c3dd7e4e8 807 ProSitePatterns PS01229 Hypothetical cof family signature 2. 701 723 - T 17-10-2018 VI35_05050 90357739337e97828c35d157dae4b9e4 332 Gene3D G3DSA:1.10.8.350 27 192 2.1E-108 T 17-10-2018 VI35_05050 90357739337e97828c35d157dae4b9e4 332 Gene3D G3DSA:1.10.530.10 59 307 2.1E-108 T 17-10-2018 VI35_05050 90357739337e97828c35d157dae4b9e4 332 SUPERFAMILY SSF53955 25 312 1.39E-82 T 17-10-2018 IPR023346 Lysozyme-like domain superfamily VI35_05050 90357739337e97828c35d157dae4b9e4 332 Pfam PF13406 Transglycosylase SLT domain 27 308 1.3E-94 T 17-10-2018 IPR031304 Transglycosylase SLT domain 2 VI35_05050 90357739337e97828c35d157dae4b9e4 332 TIGRFAM TIGR02282 MltB: lytic murein transglycosylase B 27 310 4.7E-110 T 17-10-2018 IPR011757 Lytic transglycosylase MltB VI35_05210 203ea4aec6ef929f0b9fd666bc4d5701 400 PIRSF PIRSF015557 6 400 5.4E-145 T 17-10-2018 IPR016633 Uncharacterised conserved protein UCP015557 VI35_05210 203ea4aec6ef929f0b9fd666bc4d5701 400 Pfam PF10093 Uncharacterized protein conserved in bacteria (DUF2331) 10 396 3.0E-146 T 17-10-2018 IPR016633 Uncharacterised conserved protein UCP015557 VI35_05210 203ea4aec6ef929f0b9fd666bc4d5701 400 TIGRFAM TIGR03837 efp_adjacent_2: conserved hypothetical protein, PP_1857 family 10 396 1.0E-142 T 17-10-2018 IPR016633 Uncharacterised conserved protein UCP015557 VI35_21070 800416961d51f0e827242e098d7cb261 258 Gene3D G3DSA:3.30.450.80 6 162 1.9E-41 T 17-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily VI35_21070 800416961d51f0e827242e098d7cb261 258 SMART SM00421 180 237 1.1E-20 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_21070 800416961d51f0e827242e098d7cb261 258 SUPERFAMILY SSF75516 5 171 2.75E-39 T 17-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily VI35_21070 800416961d51f0e827242e098d7cb261 258 Pfam PF03472 Autoinducer binding domain 19 165 7.1E-32 T 17-10-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain VI35_21070 800416961d51f0e827242e098d7cb261 258 Pfam PF00196 Bacterial regulatory proteins, luxR family 182 235 2.4E-16 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_21070 800416961d51f0e827242e098d7cb261 258 SUPERFAMILY SSF46894 167 243 4.08E-18 T 17-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VI35_21070 800416961d51f0e827242e098d7cb261 258 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 183 197 1.1E-9 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_21070 800416961d51f0e827242e098d7cb261 258 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 197 213 1.1E-9 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_21070 800416961d51f0e827242e098d7cb261 258 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 213 225 1.1E-9 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_21070 800416961d51f0e827242e098d7cb261 258 Gene3D G3DSA:1.10.10.10 180 243 9.5E-27 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_09795 e9dc0d9d332463be92d69b66577d4f5b 524 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 69 233 1.8E-14 T 17-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VI35_09795 e9dc0d9d332463be92d69b66577d4f5b 524 Gene3D G3DSA:3.40.50.300 7 259 2.8E-17 T 17-10-2018 VI35_09795 e9dc0d9d332463be92d69b66577d4f5b 524 SUPERFAMILY SSF52540 14 248 3.05E-16 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_09795 e9dc0d9d332463be92d69b66577d4f5b 524 Pfam PF14491 Protein of unknown function (DUF4435) 279 475 3.4E-18 T 17-10-2018 IPR029492 Domain of unknown function DUF4435 VI35_00040 7b455c9d9ffb554c1a5dd831d23c4456 145 Gene3D G3DSA:2.60.40.790 33 136 4.6E-20 T 17-10-2018 IPR008978 HSP20-like chaperone VI35_00040 7b455c9d9ffb554c1a5dd831d23c4456 145 Pfam PF00011 Hsp20/alpha crystallin family 41 135 9.9E-15 T 17-10-2018 IPR002068 Alpha crystallin/Hsp20 domain VI35_00040 7b455c9d9ffb554c1a5dd831d23c4456 145 SUPERFAMILY SSF49764 31 135 1.74E-18 T 17-10-2018 IPR008978 HSP20-like chaperone VI35_11220 c0667090435545ecfe976fe28cc6a3dd 466 SMART SM00490 258 339 3.7E-29 T 17-10-2018 IPR001650 Helicase, C-terminal VI35_11220 c0667090435545ecfe976fe28cc6a3dd 466 Gene3D G3DSA:3.40.50.300 1 210 3.0E-75 T 17-10-2018 VI35_11220 c0667090435545ecfe976fe28cc6a3dd 466 Pfam PF00271 Helicase conserved C-terminal domain 231 339 4.6E-26 T 17-10-2018 IPR001650 Helicase, C-terminal VI35_11220 c0667090435545ecfe976fe28cc6a3dd 466 SUPERFAMILY SSF52540 74 360 2.7E-72 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_11220 c0667090435545ecfe976fe28cc6a3dd 466 SMART SM00487 20 222 6.6E-62 T 17-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VI35_11220 c0667090435545ecfe976fe28cc6a3dd 466 Hamap MF_00968 ATP-dependent RNA helicase RhlE [rhlE]. 1 462 50.091 T 17-10-2018 IPR028622 ATP-dependent RNA helicase RhlE GO:0004004|GO:0042255 VI35_11220 c0667090435545ecfe976fe28cc6a3dd 466 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 153 161 - T 17-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VI35_11220 c0667090435545ecfe976fe28cc6a3dd 466 Gene3D G3DSA:3.40.50.300 214 403 4.5E-46 T 17-10-2018 VI35_11220 c0667090435545ecfe976fe28cc6a3dd 466 Pfam PF00270 DEAD/DEAH box helicase 26 195 1.8E-46 T 17-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VI35_10790 2f0943acd1ef19a3bda141aae979bee7 325 PIRSF PIRSF002465 1 324 2.0E-114 T 17-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 VI35_10790 2f0943acd1ef19a3bda141aae979bee7 325 Gene3D G3DSA:3.40.718.10 1 324 1.6E-116 T 17-10-2018 VI35_10790 2f0943acd1ef19a3bda141aae979bee7 325 SUPERFAMILY SSF53659 1 321 1.03E-96 T 17-10-2018 VI35_10790 2f0943acd1ef19a3bda141aae979bee7 325 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 324 136.439 T 17-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 VI35_10790 2f0943acd1ef19a3bda141aae979bee7 325 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 2 320 8.1E-104 T 17-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 VI35_10790 2f0943acd1ef19a3bda141aae979bee7 325 Pfam PF02504 Fatty acid synthesis protein 2 308 1.1E-97 T 17-10-2018 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 VI35_02735 8c2bb03c2d8f28d10d88cd73e24a6c7e 343 Gene3D G3DSA:3.30.1330.60 213 339 7.5E-41 T 17-10-2018 IPR036737 OmpA-like domain superfamily VI35_02735 8c2bb03c2d8f28d10d88cd73e24a6c7e 343 SUPERFAMILY SSF103088 213 335 4.58E-30 T 17-10-2018 IPR036737 OmpA-like domain superfamily VI35_02735 8c2bb03c2d8f28d10d88cd73e24a6c7e 343 Pfam PF01389 OmpA-like transmembrane domain 23 194 6.1E-41 T 17-10-2018 IPR000498 Outer membrane protein OmpA-like, transmembrane domain GO:0009279|GO:0016021 VI35_02735 8c2bb03c2d8f28d10d88cd73e24a6c7e 343 Gene3D G3DSA:2.40.160.20 12 212 8.9E-58 T 17-10-2018 VI35_02735 8c2bb03c2d8f28d10d88cd73e24a6c7e 343 PRINTS PR01022 Outer membrane protein A signature 112 128 1.2E-33 T 17-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 VI35_02735 8c2bb03c2d8f28d10d88cd73e24a6c7e 343 PRINTS PR01022 Outer membrane protein A signature 242 261 1.2E-33 T 17-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 VI35_02735 8c2bb03c2d8f28d10d88cd73e24a6c7e 343 PRINTS PR01022 Outer membrane protein A signature 213 228 1.2E-33 T 17-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 VI35_02735 8c2bb03c2d8f28d10d88cd73e24a6c7e 343 PRINTS PR01022 Outer membrane protein A signature 281 300 1.2E-33 T 17-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 VI35_02735 8c2bb03c2d8f28d10d88cd73e24a6c7e 343 PRINTS PR01022 Outer membrane protein A signature 314 327 1.2E-33 T 17-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 VI35_02735 8c2bb03c2d8f28d10d88cd73e24a6c7e 343 PRINTS PR01022 Outer membrane protein A signature 180 194 1.2E-33 T 17-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 VI35_02735 8c2bb03c2d8f28d10d88cd73e24a6c7e 343 PRINTS PR01021 OMPA domain signature 257 272 5.4E-22 T 17-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VI35_02735 8c2bb03c2d8f28d10d88cd73e24a6c7e 343 PRINTS PR01021 OMPA domain signature 225 247 5.4E-22 T 17-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VI35_02735 8c2bb03c2d8f28d10d88cd73e24a6c7e 343 PRINTS PR01021 OMPA domain signature 272 288 5.4E-22 T 17-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VI35_02735 8c2bb03c2d8f28d10d88cd73e24a6c7e 343 ProSitePatterns PS01068 OmpA-like domain. 259 303 - T 17-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 VI35_02735 8c2bb03c2d8f28d10d88cd73e24a6c7e 343 SUPERFAMILY SSF56925 23 196 1.28E-33 T 17-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VI35_02735 8c2bb03c2d8f28d10d88cd73e24a6c7e 343 Pfam PF00691 OmpA family 224 316 1.1E-21 T 17-10-2018 IPR006665 OmpA-like domain VI35_13205 5ed472977ba2ddc1afa4da99de295523 312 Pfam PF09925 Predicted membrane protein (DUF2157) 11 152 9.4E-32 T 17-10-2018 IPR018677 Domain of unknown function DUF2157 VI35_04970 bb9edffec4904cdaa34433fef9cde247 172 ProSitePatterns PS00201 Flavodoxin signature. 5 21 - T 17-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 VI35_04970 bb9edffec4904cdaa34433fef9cde247 172 Gene3D G3DSA:3.40.50.360 1 172 2.4E-47 T 17-10-2018 IPR029039 Flavoprotein-like superfamily VI35_04970 bb9edffec4904cdaa34433fef9cde247 172 TIGRFAM TIGR01752 flav_long: flavodoxin 2 168 3.3E-67 T 17-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 VI35_04970 bb9edffec4904cdaa34433fef9cde247 172 Pfam PF00258 Flavodoxin 5 160 4.3E-22 T 17-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 VI35_04970 bb9edffec4904cdaa34433fef9cde247 172 PIRSF PIRSF038996 1 171 1.1E-56 T 17-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 VI35_04970 bb9edffec4904cdaa34433fef9cde247 172 SUPERFAMILY SSF52218 1 168 3.73E-47 T 17-10-2018 IPR029039 Flavoprotein-like superfamily VI35_11740 7fe14177029ac1f666b3d36fbe83f17b 151 SUPERFAMILY SSF54427 23 124 6.48E-35 T 17-10-2018 IPR032710 NTF2-like domain superfamily VI35_11740 7fe14177029ac1f666b3d36fbe83f17b 151 SUPERFAMILY SSF103642 131 151 2.78E-8 T 17-10-2018 VI35_11740 7fe14177029ac1f666b3d36fbe83f17b 151 Gene3D G3DSA:3.10.450.50 1 151 6.4E-53 T 17-10-2018 VI35_11740 7fe14177029ac1f666b3d36fbe83f17b 151 Pfam PF02810 SEC-C motif 134 151 1.7E-10 T 17-10-2018 IPR004027 SEC-C motif VI35_20040 31e26e0aeb4f78732838792523d6be53 145 Gene3D G3DSA:3.50.80.10 1 145 1.7E-54 T 17-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily VI35_20040 31e26e0aeb4f78732838792523d6be53 145 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 34.653 T 17-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 VI35_20040 31e26e0aeb4f78732838792523d6be53 145 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 3 143 1.7E-52 T 17-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 VI35_20040 31e26e0aeb4f78732838792523d6be53 145 SUPERFAMILY SSF69500 2 144 4.19E-55 T 17-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily VI35_20040 31e26e0aeb4f78732838792523d6be53 145 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 2 145 7.6E-65 T 17-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 VI35_18080 2d50edff63b5879ae92af5b961f0ca57 377 PIRSF PIRSF006078 1 377 5.5E-134 T 17-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 VI35_18080 2d50edff63b5879ae92af5b961f0ca57 377 Gene3D G3DSA:3.40.50.10350 2 360 1.4E-138 T 17-10-2018 IPR018197 Glycerate kinase, restriction-enzyme-like fold VI35_18080 2d50edff63b5879ae92af5b961f0ca57 377 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 2 374 5.5E-158 T 17-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 VI35_18080 2d50edff63b5879ae92af5b961f0ca57 377 Pfam PF02595 Glycerate kinase family 3 373 3.8E-147 T 17-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 VI35_18080 2d50edff63b5879ae92af5b961f0ca57 377 Gene3D G3DSA:3.90.1510.10 42 276 1.4E-138 T 17-10-2018 IPR018193 Glycerate kinase, flavodoxin-like fold GO:0008887|GO:0031388 VI35_18080 2d50edff63b5879ae92af5b961f0ca57 377 SUPERFAMILY SSF110738 1 375 4.71E-140 T 17-10-2018 IPR036129 Glycerate kinase superfamily GO:0008887|GO:0031388 VI35_05725 d4011bb2ffad1c382eb36578e9bfc09b 436 Pfam PF01551 Peptidase family M23 295 389 4.1E-30 T 17-10-2018 IPR016047 Peptidase M23 VI35_05725 d4011bb2ffad1c382eb36578e9bfc09b 436 Gene3D G3DSA:3.10.450.350 173 410 1.5E-81 T 17-10-2018 VI35_05725 d4011bb2ffad1c382eb36578e9bfc09b 436 SUPERFAMILY SSF51261 147 390 5.13E-71 T 17-10-2018 IPR011055 Duplicated hybrid motif VI35_05725 d4011bb2ffad1c382eb36578e9bfc09b 436 Pfam PF08525 Opacity-associated protein A N-terminal motif 7 33 8.2E-8 T 17-10-2018 IPR013731 Opacity-associated protein A, N-terminal VI35_05725 d4011bb2ffad1c382eb36578e9bfc09b 436 Gene3D G3DSA:2.70.70.10 266 395 1.5E-81 T 17-10-2018 IPR011055 Duplicated hybrid motif VI35_05725 d4011bb2ffad1c382eb36578e9bfc09b 436 Gene3D G3DSA:3.10.450.350 66 152 1.1E-10 T 17-10-2018 VI35_05725 d4011bb2ffad1c382eb36578e9bfc09b 436 Pfam PF04225 Opacity-associated protein A LysM-like domain 76 153 3.9E-6 T 17-10-2018 IPR007340 Opacity-associated protein A VI35_02055 6d739d68c448ad0d873d2fbb8fe83166 147 SUPERFAMILY SSF140566 8 133 1.2E-25 T 17-10-2018 IPR036679 FlgN-like superfamily GO:0005515|GO:0044780 VI35_02055 6d739d68c448ad0d873d2fbb8fe83166 147 Gene3D G3DSA:1.20.58.300 6 134 8.2E-22 T 17-10-2018 VI35_02055 6d739d68c448ad0d873d2fbb8fe83166 147 Pfam PF05130 FlgN protein 8 133 7.8E-20 T 17-10-2018 IPR007809 FlgN-like protein GO:0005515|GO:0044780 VI35_13705 5ac997b8e8e742cbc7923fd3c49fad61 396 TIGRFAM TIGR00277 HDIG: HDIG domain 157 248 3.6E-8 T 17-10-2018 IPR006675 HDIG domain VI35_13705 5ac997b8e8e742cbc7923fd3c49fad61 396 Pfam PF11871 Domain of unknown function (DUF3391) 10 125 1.8E-12 T 17-10-2018 IPR021812 Protein of unknown function DUF3391 VI35_13705 5ac997b8e8e742cbc7923fd3c49fad61 396 Pfam PF13487 HD domain 208 270 1.4E-16 T 17-10-2018 VI35_13705 5ac997b8e8e742cbc7923fd3c49fad61 396 SUPERFAMILY SSF109604 149 319 2.92E-31 T 17-10-2018 VI35_13705 5ac997b8e8e742cbc7923fd3c49fad61 396 SMART SM00471 153 289 6.4E-7 T 17-10-2018 IPR003607 HD/PDEase domain VI35_13705 5ac997b8e8e742cbc7923fd3c49fad61 396 Gene3D G3DSA:1.10.3210.10 9 321 2.5E-66 T 17-10-2018 VI35_15905 644263438614b638061bf75a2fc8a03c 259 Pfam PF07103 Protein of unknown function (DUF1365) 21 256 2.7E-69 T 17-10-2018 IPR010775 Protein of unknown function DUF1365 VI35_02230 a5f4fe6f9927c2c265739910aaff97d8 451 Pfam PF02875 Mur ligase family, glutamate ligase domain 311 396 2.0E-12 T 17-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 VI35_02230 a5f4fe6f9927c2c265739910aaff97d8 451 Gene3D G3DSA:3.40.1390.10 1 80 5.0E-28 T 17-10-2018 VI35_02230 a5f4fe6f9927c2c265739910aaff97d8 451 Pfam PF01225 Mur ligase family, catalytic domain 23 71 1.9E-10 T 17-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 VI35_02230 a5f4fe6f9927c2c265739910aaff97d8 451 SUPERFAMILY SSF53244 311 441 1.67E-33 T 17-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 VI35_02230 a5f4fe6f9927c2c265739910aaff97d8 451 Gene3D G3DSA:3.40.1190.10 81 309 2.5E-77 T 17-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 VI35_02230 a5f4fe6f9927c2c265739910aaff97d8 451 SUPERFAMILY SSF53623 99 308 3.4E-54 T 17-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 VI35_02230 a5f4fe6f9927c2c265739910aaff97d8 451 SUPERFAMILY SSF63418 1 96 1.22E-26 T 17-10-2018 IPR035911 MurE/MurF, N-terminal VI35_02230 a5f4fe6f9927c2c265739910aaff97d8 451 Gene3D G3DSA:3.90.190.20 310 447 2.6E-39 T 17-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 VI35_02230 a5f4fe6f9927c2c265739910aaff97d8 451 Pfam PF08245 Mur ligase middle domain 105 289 6.5E-48 T 17-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 VI35_02230 a5f4fe6f9927c2c265739910aaff97d8 451 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 29 441 7.5E-139 T 17-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VI35_02230 a5f4fe6f9927c2c265739910aaff97d8 451 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 4 443 34.462 T 17-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VI35_16960 0554dbc4aaf2f90c93ffc24fcbde1cbe 491 Gene3D G3DSA:3.30.70.270 319 472 2.0E-36 T 17-10-2018 VI35_16960 0554dbc4aaf2f90c93ffc24fcbde1cbe 491 SUPERFAMILY SSF55073 331 475 8.63E-33 T 17-10-2018 IPR029787 Nucleotide cyclase VI35_16960 0554dbc4aaf2f90c93ffc24fcbde1cbe 491 SMART SM00267 315 474 1.1E-38 T 17-10-2018 IPR000160 GGDEF domain VI35_16960 0554dbc4aaf2f90c93ffc24fcbde1cbe 491 Pfam PF00990 Diguanylate cyclase, GGDEF domain 326 469 5.6E-31 T 17-10-2018 IPR000160 GGDEF domain VI35_16960 0554dbc4aaf2f90c93ffc24fcbde1cbe 491 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 324 472 7.2E-29 T 17-10-2018 IPR000160 GGDEF domain VI35_14680 0a3a9cf2174d40a92375adcf4f9c8346 234 Pfam PF01980 Uncharacterised protein family UPF0066 20 142 1.4E-41 T 17-10-2018 IPR023370 YaeB-like, N-terminal domain VI35_14680 0a3a9cf2174d40a92375adcf4f9c8346 234 Gene3D G3DSA:3.30.2310.10 147 230 2.1E-22 T 17-10-2018 VI35_14680 0a3a9cf2174d40a92375adcf4f9c8346 234 Gene3D G3DSA:2.40.30.70 23 146 5.0E-49 T 17-10-2018 IPR036414 YaeB, N-terminal domain superfamily VI35_14680 0a3a9cf2174d40a92375adcf4f9c8346 234 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 2 147 1.2E-53 T 17-10-2018 IPR023370 YaeB-like, N-terminal domain VI35_14680 0a3a9cf2174d40a92375adcf4f9c8346 234 SUPERFAMILY SSF118196 2 228 3.53E-86 T 17-10-2018 IPR036413 YaeB-like superfamily VI35_14680 0a3a9cf2174d40a92375adcf4f9c8346 234 ProSitePatterns PS01318 TsaA-like domain signature. 86 97 - T 17-10-2018 IPR023368 Uncharacterised protein family UPF0066, conserved site VI35_15620 e891bdbf992c45bca1d16ba13e917785 261 PIRSF PIRSF029037 1 261 1.6E-100 T 17-10-2018 IPR016908 Uncharacterised conserved protein UCP029037 VI35_15620 e891bdbf992c45bca1d16ba13e917785 261 Pfam PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) 1 259 4.3E-108 T 17-10-2018 IPR016908 Uncharacterised conserved protein UCP029037 VI35_00085 63a76d9f36ad9db22a267a327f9476a2 560 PIRSF PIRSF001294 1 557 5.5E-221 T 17-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 VI35_00085 63a76d9f36ad9db22a267a327f9476a2 560 Pfam PF03814 Potassium-transporting ATPase A subunit 10 553 2.5E-220 T 17-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 VI35_00085 63a76d9f36ad9db22a267a327f9476a2 560 TIGRFAM TIGR00680 kdpA: K+-transporting ATPase, A subunit 9 555 1.6E-205 T 17-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 VI35_00085 63a76d9f36ad9db22a267a327f9476a2 560 Hamap MF_00275 Potassium-transporting ATPase potassium-binding subunit [kdpA]. 1 555 31.917 T 17-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 VI35_20980 e6d254b023c50a654fd2b62a586768b0 152 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 80 3.3E-31 T 17-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 VI35_20980 e6d254b023c50a654fd2b62a586768b0 152 Pfam PF02416 mttA/Hcf106 family 4 49 8.2E-7 T 17-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 VI35_20980 e6d254b023c50a654fd2b62a586768b0 152 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 7.7E-28 T 17-10-2018 VI35_20980 e6d254b023c50a654fd2b62a586768b0 152 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 7.7E-28 T 17-10-2018 VI35_20980 e6d254b023c50a654fd2b62a586768b0 152 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 7.7E-28 T 17-10-2018 VI35_20980 e6d254b023c50a654fd2b62a586768b0 152 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 137 19.35 T 17-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 VI35_05875 4a4a458b39e96fd7705e221b7863abd1 105 Pfam PF02049 Flagellar hook-basal body complex protein FliE 25 105 6.4E-30 T 17-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 VI35_05875 4a4a458b39e96fd7705e221b7863abd1 105 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 1 105 16.233 T 17-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 VI35_05875 4a4a458b39e96fd7705e221b7863abd1 105 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 34 50 1.2E-12 T 17-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 VI35_05875 4a4a458b39e96fd7705e221b7863abd1 105 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 69 85 1.2E-12 T 17-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 VI35_05875 4a4a458b39e96fd7705e221b7863abd1 105 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 90 103 1.2E-12 T 17-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 VI35_05875 4a4a458b39e96fd7705e221b7863abd1 105 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 20 104 1.1E-19 T 17-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 VI35_18315 670153fd2c560c164a7880146d93007f 238 Hamap MF_01627 Purine nucleoside phosphorylase DeoD-type [deoD]. 2 235 52.699 T 17-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 VI35_18315 670153fd2c560c164a7880146d93007f 238 TIGRFAM TIGR00107 deoD: purine nucleoside phosphorylase 5 234 2.2E-123 T 17-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 VI35_18315 670153fd2c560c164a7880146d93007f 238 Gene3D G3DSA:3.40.50.1580 1 236 7.0E-78 T 17-10-2018 VI35_18315 670153fd2c560c164a7880146d93007f 238 SUPERFAMILY SSF53167 3 234 4.19E-95 T 17-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 VI35_18315 670153fd2c560c164a7880146d93007f 238 Pfam PF01048 Phosphorylase superfamily 16 217 4.6E-39 T 17-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 VI35_18315 670153fd2c560c164a7880146d93007f 238 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 62 77 - T 17-10-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 VI35_20890 4938c1df95d1439c8e4c9abeae195c0d 277 Pfam PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease 1 83 9.4E-28 T 17-10-2018 IPR022732 Peptidase S54, GlpG peptidase, N-terminal GO:0004252|GO:0016021 VI35_20890 4938c1df95d1439c8e4c9abeae195c0d 277 Gene3D G3DSA:1.20.1540.10 94 273 7.7E-52 T 17-10-2018 IPR035952 Rhomboid-like superfamily VI35_20890 4938c1df95d1439c8e4c9abeae195c0d 277 TIGRFAM TIGR04239 rhombo_GlpG: rhomboid family protease GlpG 4 273 1.2E-109 T 17-10-2018 IPR023662 Rhomboid protease GlpG GO:0004252|GO:0006508|GO:0016021 VI35_20890 4938c1df95d1439c8e4c9abeae195c0d 277 SUPERFAMILY SSF144091 96 272 6.28E-38 T 17-10-2018 VI35_20890 4938c1df95d1439c8e4c9abeae195c0d 277 Pfam PF01694 Rhomboid family 135 272 2.0E-28 T 17-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 VI35_20890 4938c1df95d1439c8e4c9abeae195c0d 277 Gene3D G3DSA:3.30.70.2350 1 67 2.4E-19 T 17-10-2018 IPR038236 GlpG peptidase, N-terminal domain superfamily VI35_15715 09ad433ab1aca281c2baaecc0d39f21c 198 PIRSF PIRSF006102 1 198 3.5E-65 T 17-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 VI35_15715 09ad433ab1aca281c2baaecc0d39f21c 198 Hamap MF_00429 Na(+)-translocating NADH-quinone reductase subunit E [nqrE]. 1 198 29.417 T 17-10-2018 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 VI35_15715 09ad433ab1aca281c2baaecc0d39f21c 198 TIGRFAM TIGR01940 nqrE: NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit 2 196 3.4E-104 T 17-10-2018 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 VI35_15715 09ad433ab1aca281c2baaecc0d39f21c 198 Pfam PF02508 Rnf-Nqr subunit, membrane protein 4 196 6.1E-60 T 17-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 VI35_18670 2094c067d7bc1aebb6853aa365c5fa19 431 Gene3D G3DSA:3.40.50.300 1 196 7.6E-13 T 17-10-2018 VI35_18670 2094c067d7bc1aebb6853aa365c5fa19 431 PIRSF PIRSF029347 210 387 4.5E-11 T 17-10-2018 IPR014555 RecF-like VI35_18670 2094c067d7bc1aebb6853aa365c5fa19 431 PIRSF PIRSF029347 1 123 2.1E-10 T 17-10-2018 IPR014555 RecF-like VI35_18670 2094c067d7bc1aebb6853aa365c5fa19 431 SUPERFAMILY SSF52540 1 355 6.32E-22 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_18670 2094c067d7bc1aebb6853aa365c5fa19 431 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 23 351 3.0E-28 T 17-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VI35_18670 2094c067d7bc1aebb6853aa365c5fa19 431 Gene3D G3DSA:3.40.50.300 244 402 1.0E-8 T 17-10-2018 VI35_01830 ef68a98e065807a9cf52c88a0fb6e08c 479 PRINTS PR00045 Sigma-54 factor signature 394 405 9.8E-31 T 17-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 VI35_01830 ef68a98e065807a9cf52c88a0fb6e08c 479 PRINTS PR00045 Sigma-54 factor signature 378 390 9.8E-31 T 17-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 VI35_01830 ef68a98e065807a9cf52c88a0fb6e08c 479 PRINTS PR00045 Sigma-54 factor signature 188 205 9.8E-31 T 17-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 VI35_01830 ef68a98e065807a9cf52c88a0fb6e08c 479 PRINTS PR00045 Sigma-54 factor signature 452 470 9.8E-31 T 17-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 VI35_01830 ef68a98e065807a9cf52c88a0fb6e08c 479 Pfam PF04963 Sigma-54 factor, core binding domain 114 305 6.6E-61 T 17-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 VI35_01830 ef68a98e065807a9cf52c88a0fb6e08c 479 Pfam PF04552 Sigma-54, DNA binding domain 319 477 2.5E-71 T 17-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding VI35_01830 ef68a98e065807a9cf52c88a0fb6e08c 479 Gene3D G3DSA:1.10.10.1330 116 236 1.4E-23 T 17-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily VI35_01830 ef68a98e065807a9cf52c88a0fb6e08c 479 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 366 385 - T 17-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 VI35_01830 ef68a98e065807a9cf52c88a0fb6e08c 479 Gene3D G3DSA:1.10.10.60 419 476 1.8E-23 T 17-10-2018 VI35_01830 ef68a98e065807a9cf52c88a0fb6e08c 479 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 457 464 - T 17-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 VI35_01830 ef68a98e065807a9cf52c88a0fb6e08c 479 PIRSF PIRSF000774 1 479 2.4E-155 T 17-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 VI35_01830 ef68a98e065807a9cf52c88a0fb6e08c 479 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 10 476 4.0E-158 T 17-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 VI35_01830 ef68a98e065807a9cf52c88a0fb6e08c 479 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 5 48 7.5E-16 T 17-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 VI35_11310 b620db8c405f744c4db14509f9a6bc27 102 SUPERFAMILY SSF54909 8 100 6.19E-26 T 17-10-2018 IPR011008 Dimeric alpha-beta barrel VI35_11310 b620db8c405f744c4db14509f9a6bc27 102 Pfam PF03992 Antibiotic biosynthesis monooxygenase 10 82 2.8E-12 T 17-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain VI35_11310 b620db8c405f744c4db14509f9a6bc27 102 Gene3D G3DSA:3.30.70.100 1 102 1.6E-28 T 17-10-2018 VI35_05135 a7b3e76e6f446105e9aa4da51277fc6b 191 Gene3D G3DSA:3.40.50.850 1 190 2.3E-47 T 17-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 VI35_05135 a7b3e76e6f446105e9aa4da51277fc6b 191 Pfam PF00857 Isochorismatase family 4 185 2.4E-34 T 17-10-2018 IPR000868 Isochorismatase-like GO:0003824 VI35_05135 a7b3e76e6f446105e9aa4da51277fc6b 191 SUPERFAMILY SSF52499 2 188 4.58E-47 T 17-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 VI35_05400 253ef94b07c1d75c2363f0f62d1dc3a6 290 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 10 244 1.4E-66 T 17-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 VI35_05400 253ef94b07c1d75c2363f0f62d1dc3a6 290 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 175 187 7.0E-18 T 17-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 VI35_05400 253ef94b07c1d75c2363f0f62d1dc3a6 290 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 10 26 7.0E-18 T 17-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 VI35_05400 253ef94b07c1d75c2363f0f62d1dc3a6 290 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 50 63 7.0E-18 T 17-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 VI35_05400 253ef94b07c1d75c2363f0f62d1dc3a6 290 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 31 45 7.0E-18 T 17-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 VI35_05400 253ef94b07c1d75c2363f0f62d1dc3a6 290 PIRSF PIRSF000398 1 272 1.5E-65 T 17-10-2018 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 VI35_05400 253ef94b07c1d75c2363f0f62d1dc3a6 290 Gene3D G3DSA:3.40.50.150 7 239 2.0E-84 T 17-10-2018 VI35_05400 253ef94b07c1d75c2363f0f62d1dc3a6 290 Gene3D G3DSA:1.10.1020.10 57 156 2.0E-84 T 17-10-2018 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 VI35_05400 253ef94b07c1d75c2363f0f62d1dc3a6 290 TIGRFAM TIGR00571 dam: DNA adenine methylase 5 268 5.5E-93 T 17-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 VI35_05400 253ef94b07c1d75c2363f0f62d1dc3a6 290 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 178 184 - T 17-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 VI35_05400 253ef94b07c1d75c2363f0f62d1dc3a6 290 SUPERFAMILY SSF53335 5 268 4.1E-76 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_10550 7b3c0d45ea5bdf368dd0c22a8b5818ee 356 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 6 352 54.393 T 17-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 VI35_10550 7b3c0d45ea5bdf368dd0c22a8b5818ee 356 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 8 350 4.1E-112 T 17-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 VI35_10550 7b3c0d45ea5bdf368dd0c22a8b5818ee 356 SUPERFAMILY SSF53383 3 350 4.4E-77 T 17-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VI35_10550 7b3c0d45ea5bdf368dd0c22a8b5818ee 356 Gene3D G3DSA:3.90.1150.10 6 343 1.5E-123 T 17-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VI35_10550 7b3c0d45ea5bdf368dd0c22a8b5818ee 356 Pfam PF00155 Aminotransferase class I and II 44 345 1.7E-52 T 17-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 VI35_10550 7b3c0d45ea5bdf368dd0c22a8b5818ee 356 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 208 217 - T 17-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 VI35_10550 7b3c0d45ea5bdf368dd0c22a8b5818ee 356 Gene3D G3DSA:3.40.640.10 51 255 1.5E-123 T 17-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VI35_09965 58f582624150c3b816c0bc452b0a69b1 499 TIGRFAM TIGR00835 agcS: amino acid carrier protein 13 447 1.6E-141 T 17-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VI35_09965 58f582624150c3b816c0bc452b0a69b1 499 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 86 101 - T 17-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VI35_09965 58f582624150c3b816c0bc452b0a69b1 499 Pfam PF01235 Sodium:alanine symporter family 50 459 2.4E-151 T 17-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VI35_09965 58f582624150c3b816c0bc452b0a69b1 499 PRINTS PR00175 Sodium/alanine symporter signature 295 313 2.2E-55 T 17-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VI35_09965 58f582624150c3b816c0bc452b0a69b1 499 PRINTS PR00175 Sodium/alanine symporter signature 353 375 2.2E-55 T 17-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VI35_09965 58f582624150c3b816c0bc452b0a69b1 499 PRINTS PR00175 Sodium/alanine symporter signature 416 436 2.2E-55 T 17-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VI35_09965 58f582624150c3b816c0bc452b0a69b1 499 PRINTS PR00175 Sodium/alanine symporter signature 86 108 2.2E-55 T 17-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VI35_09965 58f582624150c3b816c0bc452b0a69b1 499 PRINTS PR00175 Sodium/alanine symporter signature 204 223 2.2E-55 T 17-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VI35_09965 58f582624150c3b816c0bc452b0a69b1 499 PRINTS PR00175 Sodium/alanine symporter signature 176 194 2.2E-55 T 17-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VI35_10760 4b18087239344a7fd0ed66c8f54a98a1 1047 Gene3D G3DSA:2.40.50.140 32 125 4.3E-32 T 17-10-2018 VI35_10760 4b18087239344a7fd0ed66c8f54a98a1 1047 Pfam PF00575 S1 RNA binding domain 36 118 9.0E-16 T 17-10-2018 IPR003029 S1 domain GO:0003676 VI35_10760 4b18087239344a7fd0ed66c8f54a98a1 1047 SMART SM00316 37 119 1.6E-11 T 17-10-2018 IPR022967 RNA-binding domain, S1 VI35_10760 4b18087239344a7fd0ed66c8f54a98a1 1047 Hamap MF_00970 Ribonuclease E [rne]. 1 1036 35.498 T 17-10-2018 IPR028878 Ribonuclease E GO:0006396|GO:0008995 VI35_10760 4b18087239344a7fd0ed66c8f54a98a1 1047 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 424 3.0E-170 T 17-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 VI35_10760 4b18087239344a7fd0ed66c8f54a98a1 1047 Pfam PF10150 Ribonuclease E/G family 121 390 3.6E-95 T 17-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 VI35_10760 4b18087239344a7fd0ed66c8f54a98a1 1047 Gene3D G3DSA:3.40.1260.20 400 507 7.7E-42 T 17-10-2018 VI35_10760 4b18087239344a7fd0ed66c8f54a98a1 1047 SUPERFAMILY SSF50249 40 124 9.97E-20 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_20730 d96eb811b1393e0af23171e804571813 115 Gene3D G3DSA:3.30.1330.40 1 115 4.2E-34 T 17-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 VI35_20730 d96eb811b1393e0af23171e804571813 115 SUPERFAMILY SSF55298 2 114 9.42E-29 T 17-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 VI35_20730 d96eb811b1393e0af23171e804571813 115 Pfam PF01042 Endoribonuclease L-PSP 4 114 1.0E-20 T 17-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 VI35_08985 e91e5ed3846fdca04229427953d582b7 159 Pfam PF07471 Phage DNA packaging protein Nu1 33 141 1.1E-20 T 17-10-2018 IPR010906 Bacteriophage lambda, Nu1, terminase small subunit VI35_19455 26fd4853964b6f0af6f9fa5cf9f246bf 406 Gene3D G3DSA:1.20.81.30 56 175 9.9E-29 T 17-10-2018 VI35_19455 26fd4853964b6f0af6f9fa5cf9f246bf 406 Pfam PF00482 Type II secretion system (T2SS), protein F 70 193 2.1E-27 T 17-10-2018 IPR018076 Type II secretion system F domain VI35_19455 26fd4853964b6f0af6f9fa5cf9f246bf 406 Pfam PF00482 Type II secretion system (T2SS), protein F 273 395 5.2E-29 T 17-10-2018 IPR018076 Type II secretion system F domain VI35_19455 26fd4853964b6f0af6f9fa5cf9f246bf 406 Gene3D G3DSA:1.20.81.30 256 368 3.5E-29 T 17-10-2018 VI35_19455 26fd4853964b6f0af6f9fa5cf9f246bf 406 PRINTS PR00812 Bacterial general secretion pathway protein F signature 384 403 1.6E-9 T 17-10-2018 IPR003004 GspF/PilC family VI35_19455 26fd4853964b6f0af6f9fa5cf9f246bf 406 PRINTS PR00812 Bacterial general secretion pathway protein F signature 368 382 1.6E-9 T 17-10-2018 IPR003004 GspF/PilC family VI35_19455 26fd4853964b6f0af6f9fa5cf9f246bf 406 PRINTS PR00812 Bacterial general secretion pathway protein F signature 165 193 1.6E-9 T 17-10-2018 IPR003004 GspF/PilC family VI35_19455 26fd4853964b6f0af6f9fa5cf9f246bf 406 PRINTS PR00812 Bacterial general secretion pathway protein F signature 66 78 1.6E-9 T 17-10-2018 IPR003004 GspF/PilC family VI35_10105 5dd99315bcf83fd004599c93b3faeb57 261 SUPERFAMILY SSF53927 9 247 1.83E-64 T 17-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 VI35_10105 5dd99315bcf83fd004599c93b3faeb57 261 PIRSF PIRSF015626 5 252 1.5E-60 T 17-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 VI35_10105 5dd99315bcf83fd004599c93b3faeb57 261 Hamap MF_00187 Sulfur carrier protein FdhD [fdhD]. 2 251 27.06 T 17-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 VI35_10105 5dd99315bcf83fd004599c93b3faeb57 261 Pfam PF02634 FdhD/NarQ family 15 247 4.3E-61 T 17-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 VI35_10105 5dd99315bcf83fd004599c93b3faeb57 261 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 12 248 1.7E-46 T 17-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 VI35_10105 5dd99315bcf83fd004599c93b3faeb57 261 Gene3D G3DSA:3.40.140.10 110 256 1.2E-34 T 17-10-2018 VI35_10105 5dd99315bcf83fd004599c93b3faeb57 261 Gene3D G3DSA:3.10.20.10 17 102 5.0E-12 T 17-10-2018 VI35_11985 fd686609fef2a71e2c6a6608448ec962 193 Gene3D G3DSA:3.30.60.20 143 188 3.2E-8 T 17-10-2018 VI35_11985 fd686609fef2a71e2c6a6608448ec962 193 Gene3D G3DSA:3.40.50.300 1 141 3.0E-25 T 17-10-2018 VI35_11985 fd686609fef2a71e2c6a6608448ec962 193 ProSitePatterns PS00603 Thymidine kinase cellular-type signature. 173 186 - T 17-10-2018 IPR020633 Thymidine kinase, conserved site GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 VI35_11985 fd686609fef2a71e2c6a6608448ec962 193 SUPERFAMILY SSF52540 1 141 3.04E-37 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_11985 fd686609fef2a71e2c6a6608448ec962 193 Hamap MF_00124 Thymidine kinase [tdk]. 1 189 33.241 T 17-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 VI35_11985 fd686609fef2a71e2c6a6608448ec962 193 Pfam PF00265 Thymidine kinase 3 186 3.3E-50 T 17-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 VI35_11985 fd686609fef2a71e2c6a6608448ec962 193 PIRSF PIRSF035805 1 193 1.4E-54 T 17-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 VI35_11985 fd686609fef2a71e2c6a6608448ec962 193 SUPERFAMILY SSF57716 142 189 3.71E-16 T 17-10-2018 VI35_12865 0e1e0ffc5bc4721775ceace47b5d358b 411 Pfam PF00589 Phage integrase family 225 378 1.2E-10 T 17-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VI35_12865 0e1e0ffc5bc4721775ceace47b5d358b 411 Gene3D G3DSA:1.10.150.130 104 185 1.6E-22 T 17-10-2018 IPR010998 Integrase/recombinase, N-terminal VI35_12865 0e1e0ffc5bc4721775ceace47b5d358b 411 Pfam PF13356 Arm DNA-binding domain 6 85 5.2E-17 T 17-10-2018 IPR025166 Integrase, DNA-binding domain VI35_12865 0e1e0ffc5bc4721775ceace47b5d358b 411 SUPERFAMILY SSF56349 103 388 1.21E-39 T 17-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VI35_12865 0e1e0ffc5bc4721775ceace47b5d358b 411 Gene3D G3DSA:3.30.160.390 3 103 1.5E-26 T 17-10-2018 IPR038488 Integrase, DNA-binding domain superfamily VI35_12865 0e1e0ffc5bc4721775ceace47b5d358b 411 Gene3D G3DSA:1.10.443.10 226 395 1.0E-14 T 17-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VI35_18735 b9f72ee030e555b97ed7f2f2fad3bd17 441 Gene3D G3DSA:1.20.1600.10 21 439 1.3E-118 T 17-10-2018 VI35_18735 b9f72ee030e555b97ed7f2f2fad3bd17 441 Pfam PF02321 Outer membrane efflux protein 24 205 6.1E-24 T 17-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VI35_18735 b9f72ee030e555b97ed7f2f2fad3bd17 441 Pfam PF02321 Outer membrane efflux protein 229 417 1.4E-33 T 17-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VI35_18735 b9f72ee030e555b97ed7f2f2fad3bd17 441 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 19 429 7.1E-109 T 17-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 VI35_18735 b9f72ee030e555b97ed7f2f2fad3bd17 441 SUPERFAMILY SSF56954 1 419 5.62E-89 T 17-10-2018 VI35_07160 5d819807f7af86bcbbb335144fc4ee7f 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 8.7E-10 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_07160 5d819807f7af86bcbbb335144fc4ee7f 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 8.7E-10 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_07160 5d819807f7af86bcbbb335144fc4ee7f 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 8.7E-10 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_07160 5d819807f7af86bcbbb335144fc4ee7f 291 Gene3D G3DSA:1.10.10.10 1 86 3.4E-25 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_07160 5d819807f7af86bcbbb335144fc4ee7f 291 Gene3D G3DSA:3.40.190.10 92 267 6.8E-11 T 17-10-2018 VI35_07160 5d819807f7af86bcbbb335144fc4ee7f 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 3.4E-19 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_07160 5d819807f7af86bcbbb335144fc4ee7f 291 SUPERFAMILY SSF53850 88 274 7.14E-24 T 17-10-2018 VI35_07160 5d819807f7af86bcbbb335144fc4ee7f 291 Pfam PF03466 LysR substrate binding domain 87 274 5.7E-21 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_07160 5d819807f7af86bcbbb335144fc4ee7f 291 Gene3D G3DSA:3.40.190.10 163 255 6.8E-11 T 17-10-2018 VI35_07160 5d819807f7af86bcbbb335144fc4ee7f 291 SUPERFAMILY SSF46785 1 81 1.82E-22 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_10730 d6039c7b4ab2b1e7168eb1ea035351a1 244 Pfam PF05235 CHAD domain 13 201 1.4E-13 T 17-10-2018 IPR007899 CHAD domain VI35_10730 d6039c7b4ab2b1e7168eb1ea035351a1 244 SMART SM00880 8 236 2.3E-5 T 17-10-2018 IPR007899 CHAD domain VI35_10730 d6039c7b4ab2b1e7168eb1ea035351a1 244 Gene3D G3DSA:1.40.20.10 3 111 7.2E-8 T 17-10-2018 IPR038186 CHAD domain superfamily VI35_16110 c1f709c977a2912f6fd8419c2cda755d 158 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 1 71 1.6E-9 T 17-10-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 VI35_16110 c1f709c977a2912f6fd8419c2cda755d 158 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 76 155 1.6E-34 T 17-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 VI35_16110 c1f709c977a2912f6fd8419c2cda755d 158 SUPERFAMILY SSF53155 4 79 3.14E-12 T 17-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 VI35_16110 c1f709c977a2912f6fd8419c2cda755d 158 Gene3D G3DSA:1.10.10.10 74 158 1.9E-37 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_16110 c1f709c977a2912f6fd8419c2cda755d 158 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 75 154 9.5E-38 T 17-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 VI35_16110 c1f709c977a2912f6fd8419c2cda755d 158 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 125 131 - T 17-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 VI35_16110 c1f709c977a2912f6fd8419c2cda755d 158 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 6 155 40.862 T 17-10-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 VI35_16110 c1f709c977a2912f6fd8419c2cda755d 158 Gene3D G3DSA:3.30.160.70 1 70 2.0E-13 T 17-10-2018 VI35_16110 c1f709c977a2912f6fd8419c2cda755d 158 SUPERFAMILY SSF46767 74 155 9.81E-34 T 17-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 VI35_05980 92f92a04332adea36da278a8d2902d27 718 Gene3D G3DSA:1.20.120.160 3 143 2.9E-38 T 17-10-2018 IPR036641 HPT domain superfamily GO:0000160 VI35_05980 92f92a04332adea36da278a8d2902d27 718 SMART SM00073 6 103 1.3E-19 T 17-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VI35_05980 92f92a04332adea36da278a8d2902d27 718 SMART SM00387 436 579 1.8E-23 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_05980 92f92a04332adea36da278a8d2902d27 718 SUPERFAMILY SSF50341 578 711 1.44E-30 T 17-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 VI35_05980 92f92a04332adea36da278a8d2902d27 718 PRINTS PR00344 Bacterial sensor protein C-terminal signature 481 495 9.0E-12 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_05980 92f92a04332adea36da278a8d2902d27 718 PRINTS PR00344 Bacterial sensor protein C-terminal signature 523 533 9.0E-12 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_05980 92f92a04332adea36da278a8d2902d27 718 PRINTS PR00344 Bacterial sensor protein C-terminal signature 563 576 9.0E-12 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_05980 92f92a04332adea36da278a8d2902d27 718 PRINTS PR00344 Bacterial sensor protein C-terminal signature 539 557 9.0E-12 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_05980 92f92a04332adea36da278a8d2902d27 718 SUPERFAMILY SSF47226 6 128 1.24E-33 T 17-10-2018 IPR036641 HPT domain superfamily GO:0000160 VI35_05980 92f92a04332adea36da278a8d2902d27 718 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 332 391 3.0E-12 T 17-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 VI35_05980 92f92a04332adea36da278a8d2902d27 718 Gene3D G3DSA:2.40.50.180 602 666 1.9E-35 T 17-10-2018 VI35_05980 92f92a04332adea36da278a8d2902d27 718 Gene3D G3DSA:2.30.30.40 579 707 1.9E-35 T 17-10-2018 VI35_05980 92f92a04332adea36da278a8d2902d27 718 Pfam PF01584 CheW-like domain 585 712 2.6E-23 T 17-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VI35_05980 92f92a04332adea36da278a8d2902d27 718 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 439 578 2.0E-17 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_05980 92f92a04332adea36da278a8d2902d27 718 Pfam PF01627 Hpt domain 8 99 3.9E-19 T 17-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VI35_05980 92f92a04332adea36da278a8d2902d27 718 SUPERFAMILY SSF47384 332 392 1.65E-13 T 17-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VI35_05980 92f92a04332adea36da278a8d2902d27 718 SMART SM00260 571 711 2.3E-35 T 17-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VI35_05980 92f92a04332adea36da278a8d2902d27 718 Gene3D G3DSA:1.10.287.560 331 391 6.9E-19 T 17-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 VI35_05980 92f92a04332adea36da278a8d2902d27 718 SMART SM01231 331 391 1.0E-16 T 17-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 VI35_05980 92f92a04332adea36da278a8d2902d27 718 SUPERFAMILY SSF55874 394 577 1.31E-38 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_05980 92f92a04332adea36da278a8d2902d27 718 Gene3D G3DSA:3.30.565.10 392 578 2.6E-54 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_13980 db79cc1173566879554e5b4f023d3144 160 Pfam PF13489 Methyltransferase domain 7 103 1.5E-9 T 17-10-2018 VI35_13980 db79cc1173566879554e5b4f023d3144 160 Gene3D G3DSA:3.40.50.150 1 157 6.1E-33 T 17-10-2018 VI35_13980 db79cc1173566879554e5b4f023d3144 160 SUPERFAMILY SSF53335 4 118 1.59E-19 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_08685 713892ec3626f47f8f887505b7a7f55b 302 SUPERFAMILY SSF52499 1 207 8.9E-60 T 17-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 VI35_08685 713892ec3626f47f8f887505b7a7f55b 302 SUPERFAMILY SSF47336 226 297 8.11E-10 T 17-10-2018 IPR036736 ACP-like superfamily VI35_08685 713892ec3626f47f8f887505b7a7f55b 302 Gene3D G3DSA:1.10.1200.10 220 293 5.1E-23 T 17-10-2018 IPR036736 ACP-like superfamily VI35_08685 713892ec3626f47f8f887505b7a7f55b 302 Pfam PF00857 Isochorismatase family 30 202 5.8E-34 T 17-10-2018 IPR000868 Isochorismatase-like GO:0003824 VI35_08685 713892ec3626f47f8f887505b7a7f55b 302 PIRSF PIRSF001111 1 297 4.9E-127 T 17-10-2018 IPR016291 Isochorismatase GO:0008908 VI35_08685 713892ec3626f47f8f887505b7a7f55b 302 PRINTS PR01398 Isochorismatase signature 2 14 2.8E-45 T 17-10-2018 IPR016291 Isochorismatase GO:0008908 VI35_08685 713892ec3626f47f8f887505b7a7f55b 302 PRINTS PR01398 Isochorismatase signature 110 132 2.8E-45 T 17-10-2018 IPR016291 Isochorismatase GO:0008908 VI35_08685 713892ec3626f47f8f887505b7a7f55b 302 PRINTS PR01398 Isochorismatase signature 61 78 2.8E-45 T 17-10-2018 IPR016291 Isochorismatase GO:0008908 VI35_08685 713892ec3626f47f8f887505b7a7f55b 302 PRINTS PR01398 Isochorismatase signature 78 97 2.8E-45 T 17-10-2018 IPR016291 Isochorismatase GO:0008908 VI35_08685 713892ec3626f47f8f887505b7a7f55b 302 PRINTS PR01398 Isochorismatase signature 184 201 2.8E-45 T 17-10-2018 IPR016291 Isochorismatase GO:0008908 VI35_08685 713892ec3626f47f8f887505b7a7f55b 302 PRINTS PR01398 Isochorismatase signature 166 184 2.8E-45 T 17-10-2018 IPR016291 Isochorismatase GO:0008908 VI35_08685 713892ec3626f47f8f887505b7a7f55b 302 Pfam PF00550 Phosphopantetheine attachment site 234 285 1.5E-7 T 17-10-2018 IPR009081 Phosphopantetheine binding ACP domain VI35_08685 713892ec3626f47f8f887505b7a7f55b 302 Gene3D G3DSA:3.40.50.850 1 208 5.6E-76 T 17-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 VI35_01245 c65ab4e62dd934b35fcb8c3510b5bc28 217 SUPERFAMILY SSF116726 136 216 1.05E-12 T 17-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VI35_01245 c65ab4e62dd934b35fcb8c3510b5bc28 217 Gene3D G3DSA:3.30.70.1450 138 213 3.3E-9 T 17-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VI35_01245 c65ab4e62dd934b35fcb8c3510b5bc28 217 Gene3D G3DSA:3.40.50.720 1 137 7.6E-37 T 17-10-2018 VI35_01245 c65ab4e62dd934b35fcb8c3510b5bc28 217 Pfam PF02254 TrkA-N domain 5 120 3.3E-28 T 17-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 VI35_01245 c65ab4e62dd934b35fcb8c3510b5bc28 217 SUPERFAMILY SSF51735 3 134 5.72E-36 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_20120 cdc3deac9c7f09b36128e8048faa8a47 185 Gene3D G3DSA:3.30.65.10 10 58 3.0E-10 T 17-10-2018 VI35_20120 cdc3deac9c7f09b36128e8048faa8a47 185 Gene3D G3DSA:3.30.65.10 59 108 3.1E-6 T 17-10-2018 VI35_20120 cdc3deac9c7f09b36128e8048faa8a47 185 SUPERFAMILY SSF57783 65 105 2.72E-11 T 17-10-2018 VI35_20120 cdc3deac9c7f09b36128e8048faa8a47 185 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 109 147 7.7E-15 T 17-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 VI35_20120 cdc3deac9c7f09b36128e8048faa8a47 185 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 20 55 1.9E-15 T 17-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 VI35_20120 cdc3deac9c7f09b36128e8048faa8a47 185 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 67 103 5.2E-14 T 17-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 VI35_20120 cdc3deac9c7f09b36128e8048faa8a47 185 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 152 168 0.85 T 17-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 VI35_20120 cdc3deac9c7f09b36128e8048faa8a47 185 SUPERFAMILY SSF57783 16 54 8.67E-13 T 17-10-2018 VI35_10660 a28445265937c7947842cf8912585b1c 140 Gene3D G3DSA:3.10.580.10 1 129 1.8E-27 T 17-10-2018 VI35_10660 a28445265937c7947842cf8912585b1c 140 Pfam PF00571 CBS domain 73 127 2.4E-10 T 17-10-2018 IPR000644 CBS domain VI35_10660 a28445265937c7947842cf8912585b1c 140 Pfam PF00571 CBS domain 6 60 8.5E-7 T 17-10-2018 IPR000644 CBS domain VI35_10660 a28445265937c7947842cf8912585b1c 140 SUPERFAMILY SSF54631 1 126 6.06E-30 T 17-10-2018 VI35_10660 a28445265937c7947842cf8912585b1c 140 SMART SM00116 80 127 1.3 T 17-10-2018 IPR000644 CBS domain VI35_10660 a28445265937c7947842cf8912585b1c 140 SMART SM00116 13 61 4.6 T 17-10-2018 IPR000644 CBS domain VI35_00480 2b5d40ee2bd972b262bf31079df1e156 477 Gene3D G3DSA:3.90.220.20 2 214 3.6E-36 T 17-10-2018 VI35_00480 2b5d40ee2bd972b262bf31079df1e156 477 Gene3D G3DSA:3.90.220.20 220 425 1.7E-37 T 17-10-2018 VI35_00480 2b5d40ee2bd972b262bf31079df1e156 477 SUPERFAMILY SSF116734 226 433 1.8E-36 T 17-10-2018 VI35_00480 2b5d40ee2bd972b262bf31079df1e156 477 Pfam PF01420 Type I restriction modification DNA specificity domain 12 194 1.7E-14 T 17-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 VI35_00480 2b5d40ee2bd972b262bf31079df1e156 477 Pfam PF01420 Type I restriction modification DNA specificity domain 226 404 4.8E-15 T 17-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 VI35_00480 2b5d40ee2bd972b262bf31079df1e156 477 SUPERFAMILY SSF116734 11 216 5.56E-34 T 17-10-2018 VI35_17435 9ad892f718c50df9479c54bb261423a1 235 SUPERFAMILY SSF110849 29 224 3.14E-61 T 17-10-2018 IPR036086 ParB/Sulfiredoxin superfamily VI35_17435 9ad892f718c50df9479c54bb261423a1 235 PIRSF PIRSF029669 19 227 3.0E-63 T 17-10-2018 IPR016932 Uncharacterised conserved protein UCP029669 VI35_17435 9ad892f718c50df9479c54bb261423a1 235 Gene3D G3DSA:3.90.1530.10 26 153 7.9E-37 T 17-10-2018 VI35_17435 9ad892f718c50df9479c54bb261423a1 235 Gene3D G3DSA:1.10.8.10 154 216 5.0E-8 T 17-10-2018 VI35_17435 9ad892f718c50df9479c54bb261423a1 235 Pfam PF08857 Putative ParB-like nuclease 32 186 3.1E-50 T 17-10-2018 IPR014956 Putative ParB-like nuclease VI35_08640 f056af61390d1bd0fceea219b03cef04 526 SMART SM00283 264 525 1.7E-56 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_08640 f056af61390d1bd0fceea219b03cef04 526 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 325 492 4.3E-41 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_08640 f056af61390d1bd0fceea219b03cef04 526 SUPERFAMILY SSF58104 217 525 1.23E-67 T 17-10-2018 VI35_08640 f056af61390d1bd0fceea219b03cef04 526 Pfam PF17200 Single Cache domain 2 22 172 1.9E-42 T 17-10-2018 IPR033480 Single Cache domain 2 VI35_08640 f056af61390d1bd0fceea219b03cef04 526 SMART SM00304 195 249 1.6E-8 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_08640 f056af61390d1bd0fceea219b03cef04 526 Gene3D G3DSA:1.10.287.950 194 526 1.4E-65 T 17-10-2018 VI35_08640 f056af61390d1bd0fceea219b03cef04 526 Gene3D G3DSA:3.30.450.20 17 172 1.1E-58 T 17-10-2018 VI35_08640 f056af61390d1bd0fceea219b03cef04 526 SMART SM01049 18 112 1.4E-39 T 17-10-2018 IPR033480 Single Cache domain 2 VI35_06860 923ea55efaa2c14b03adac318dd986a4 154 Pfam PF02391 MoaE protein 8 120 6.3E-37 T 17-10-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 VI35_06860 923ea55efaa2c14b03adac318dd986a4 154 SUPERFAMILY SSF54690 4 150 5.49E-52 T 17-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 VI35_06860 923ea55efaa2c14b03adac318dd986a4 154 Gene3D G3DSA:3.90.1170.40 1 150 1.2E-53 T 17-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 VI35_09125 b76acb3b5e25aefd32c01c6ee6b300ff 261 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 17-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 VI35_09125 b76acb3b5e25aefd32c01c6ee6b300ff 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 5.8E-21 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_09125 b76acb3b5e25aefd32c01c6ee6b300ff 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 5.8E-21 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_09125 b76acb3b5e25aefd32c01c6ee6b300ff 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 5.8E-21 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_09125 b76acb3b5e25aefd32c01c6ee6b300ff 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 5.8E-21 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_09125 b76acb3b5e25aefd32c01c6ee6b300ff 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 5.8E-21 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_09125 b76acb3b5e25aefd32c01c6ee6b300ff 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 3.4E-8 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_09125 b76acb3b5e25aefd32c01c6ee6b300ff 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 3.4E-8 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_09125 b76acb3b5e25aefd32c01c6ee6b300ff 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 3.4E-8 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_09125 b76acb3b5e25aefd32c01c6ee6b300ff 261 Pfam PF00106 short chain dehydrogenase 7 193 2.4E-43 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_09125 b76acb3b5e25aefd32c01c6ee6b300ff 261 SUPERFAMILY SSF51735 7 226 1.66E-53 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_09125 b76acb3b5e25aefd32c01c6ee6b300ff 261 PIRSF PIRSF000126 1 261 3.3E-68 T 17-10-2018 VI35_09125 b76acb3b5e25aefd32c01c6ee6b300ff 261 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5 144 0.0057 T 17-10-2018 VI35_09125 b76acb3b5e25aefd32c01c6ee6b300ff 261 Gene3D G3DSA:3.40.50.720 5 261 1.6E-67 T 17-10-2018 VI35_05315 395a197bdf0decd03e2e824dc06c3ee9 444 PIRSF PIRSF006603 1 444 1.2E-55 T 17-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VI35_05315 395a197bdf0decd03e2e824dc06c3ee9 444 Pfam PF01554 MatE 247 393 2.5E-9 T 17-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VI35_05315 395a197bdf0decd03e2e824dc06c3ee9 444 Pfam PF01554 MatE 21 182 2.9E-19 T 17-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VI35_20150 fbd4413b09cbd656e40e87b346e98869 430 Gene3D G3DSA:1.10.940.10 1 137 7.7E-45 T 17-10-2018 IPR035926 NusB-like superfamily VI35_20150 fbd4413b09cbd656e40e87b346e98869 430 Gene3D G3DSA:3.40.50.150 228 430 2.2E-69 T 17-10-2018 VI35_20150 fbd4413b09cbd656e40e87b346e98869 430 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 315 327 8.6E-29 T 17-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VI35_20150 fbd4413b09cbd656e40e87b346e98869 430 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 412 429 8.6E-29 T 17-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VI35_20150 fbd4413b09cbd656e40e87b346e98869 430 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 365 381 8.6E-29 T 17-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VI35_20150 fbd4413b09cbd656e40e87b346e98869 430 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 248 258 8.6E-29 T 17-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VI35_20150 fbd4413b09cbd656e40e87b346e98869 430 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 219 233 8.6E-29 T 17-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VI35_20150 fbd4413b09cbd656e40e87b346e98869 430 Gene3D G3DSA:1.10.287.730 143 169 1.1E-12 T 17-10-2018 VI35_20150 fbd4413b09cbd656e40e87b346e98869 430 Gene3D G3DSA:3.30.70.1170 170 227 5.0E-17 T 17-10-2018 VI35_20150 fbd4413b09cbd656e40e87b346e98869 430 Pfam PF01029 NusB family 1 123 5.9E-27 T 17-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 VI35_20150 fbd4413b09cbd656e40e87b346e98869 430 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 4 429 1.7E-152 T 17-10-2018 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 VI35_20150 fbd4413b09cbd656e40e87b346e98869 430 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 314 325 - T 17-10-2018 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 VI35_20150 fbd4413b09cbd656e40e87b346e98869 430 Pfam PF01189 16S rRNA methyltransferase RsmB/F 237 427 1.3E-71 T 17-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 VI35_20150 fbd4413b09cbd656e40e87b346e98869 430 SUPERFAMILY SSF53335 137 429 1.24E-74 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_20150 fbd4413b09cbd656e40e87b346e98869 430 SUPERFAMILY SSF48013 1 146 4.84E-37 T 17-10-2018 IPR035926 NusB-like superfamily VI35_05950 a11eaf32f222203c1bda469925f66f08 700 Gene3D G3DSA:1.10.8.540 508 596 6.4E-25 T 17-10-2018 VI35_05950 a11eaf32f222203c1bda469925f66f08 700 Gene3D G3DSA:3.40.30.60 365 507 6.3E-52 T 17-10-2018 VI35_05950 a11eaf32f222203c1bda469925f66f08 700 Gene3D G3DSA:1.10.490.80 600 697 4.4E-13 T 17-10-2018 VI35_05950 a11eaf32f222203c1bda469925f66f08 700 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 37 50 8.4E-56 T 17-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 VI35_05950 a11eaf32f222203c1bda469925f66f08 700 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 141 157 8.4E-56 T 17-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 VI35_05950 a11eaf32f222203c1bda469925f66f08 700 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 241 255 8.4E-56 T 17-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 VI35_05950 a11eaf32f222203c1bda469925f66f08 700 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 160 178 8.4E-56 T 17-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 VI35_05950 a11eaf32f222203c1bda469925f66f08 700 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 190 207 8.4E-56 T 17-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 VI35_05950 a11eaf32f222203c1bda469925f66f08 700 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 74 93 8.4E-56 T 17-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 VI35_05950 a11eaf32f222203c1bda469925f66f08 700 Pfam PF00771 FHIPEP family 31 689 1.5E-270 T 17-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 VI35_05950 a11eaf32f222203c1bda469925f66f08 700 PIRSF PIRSF005419 13 699 1.7E-246 T 17-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 VI35_05950 a11eaf32f222203c1bda469925f66f08 700 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 23 697 1.3E-265 T 17-10-2018 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 VI35_05950 a11eaf32f222203c1bda469925f66f08 700 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 146 169 - T 17-10-2018 IPR025505 FHIPEP conserved site VI35_20960 37db98cbbdc05cfe8893afdf986f5b18 680 Pfam PF01432 Peptidase family M3 222 677 5.7E-162 T 17-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 VI35_20960 37db98cbbdc05cfe8893afdf986f5b18 680 Gene3D G3DSA:1.10.1370.40 13 675 3.5E-268 T 17-10-2018 VI35_20960 37db98cbbdc05cfe8893afdf986f5b18 680 SUPERFAMILY SSF55486 1 677 6.72E-213 T 17-10-2018 VI35_20960 37db98cbbdc05cfe8893afdf986f5b18 680 Gene3D G3DSA:1.10.1370.10 140 610 3.5E-268 T 17-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 VI35_09270 78412b5f4785058ef5fc7052cde6e796 115 SUPERFAMILY SSF55604 36 107 2.35E-18 T 17-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VI35_09270 78412b5f4785058ef5fc7052cde6e796 115 Pfam PF00367 phosphotransferase system, EIIB 37 64 2.6E-10 T 17-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VI35_09270 78412b5f4785058ef5fc7052cde6e796 115 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 32 93 8.0E-14 T 17-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 VI35_09270 78412b5f4785058ef5fc7052cde6e796 115 Gene3D G3DSA:3.30.1360.60 31 110 2.9E-23 T 17-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VI35_12385 b33d40dbd3264a68e55bfbf7dd43bc74 122 SUPERFAMILY SSF52821 4 122 4.06E-34 T 17-10-2018 IPR036873 Rhodanese-like domain superfamily VI35_12385 b33d40dbd3264a68e55bfbf7dd43bc74 122 Pfam PF00581 Rhodanese-like domain 25 115 1.4E-14 T 17-10-2018 IPR001763 Rhodanese-like domain VI35_12385 b33d40dbd3264a68e55bfbf7dd43bc74 122 Gene3D G3DSA:3.40.250.10 4 122 4.8E-30 T 17-10-2018 IPR036873 Rhodanese-like domain superfamily VI35_12385 b33d40dbd3264a68e55bfbf7dd43bc74 122 SMART SM00450 18 119 1.6E-16 T 17-10-2018 IPR001763 Rhodanese-like domain VI35_17900 7a7d804cd5d94ad3c0eb25b89cb96d76 396 Pfam PF06965 Na+/H+ antiporter 1 7 380 7.2E-149 T 17-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 VI35_17900 7a7d804cd5d94ad3c0eb25b89cb96d76 396 TIGRFAM TIGR00773 NhaA: Na+/H+ antiporter NhaA 8 379 1.6E-169 T 17-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 VI35_17900 7a7d804cd5d94ad3c0eb25b89cb96d76 396 Hamap MF_01844 Na(+)/H(+) antiporter NhaA [nhaA]. 5 387 23.442 T 17-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 VI35_17900 7a7d804cd5d94ad3c0eb25b89cb96d76 396 Gene3D G3DSA:1.20.1530.10 3 388 1.1E-152 T 17-10-2018 IPR023171 Na/H antiporter domain superfamily VI35_01970 36ab065112010cbd1470112c1c337f0e 636 Pfam PF04348 LppC putative lipoprotein 50 594 1.8E-115 T 17-10-2018 IPR007443 Penicillin-binding protein activator LpoA VI35_01970 36ab065112010cbd1470112c1c337f0e 636 Gene3D G3DSA:1.25.40.10 32 153 1.2E-8 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_01970 36ab065112010cbd1470112c1c337f0e 636 Gene3D G3DSA:1.25.40.650 157 262 3.8E-19 T 17-10-2018 VI35_01970 36ab065112010cbd1470112c1c337f0e 636 Gene3D G3DSA:3.40.50.2300 367 588 1.2E-64 T 17-10-2018 VI35_01970 36ab065112010cbd1470112c1c337f0e 636 SUPERFAMILY SSF53822 265 597 3.77E-69 T 17-10-2018 IPR028082 Periplasmic binding protein-like I VI35_01970 36ab065112010cbd1470112c1c337f0e 636 Gene3D G3DSA:3.40.50.2300 268 587 1.2E-64 T 17-10-2018 VI35_13850 e2b688a97eb914678a0f6fbd47c7b5fb 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 20 255 2.6E-26 T 17-10-2018 VI35_13850 e2b688a97eb914678a0f6fbd47c7b5fb 256 Gene3D G3DSA:3.40.50.720 1 256 7.7E-37 T 17-10-2018 VI35_13850 e2b688a97eb914678a0f6fbd47c7b5fb 256 SUPERFAMILY SSF51735 7 256 3.94E-40 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_13850 e2b688a97eb914678a0f6fbd47c7b5fb 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 7.2E-7 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_13850 e2b688a97eb914678a0f6fbd47c7b5fb 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 7.2E-7 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_13850 e2b688a97eb914678a0f6fbd47c7b5fb 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 187 7.2E-7 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_13850 e2b688a97eb914678a0f6fbd47c7b5fb 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 7.2E-7 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_13850 e2b688a97eb914678a0f6fbd47c7b5fb 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 189 206 7.2E-7 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_13120 15c74c9a952c40daefd91597947e6b9d 270 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 5 268 2.6E-101 T 17-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VI35_13120 15c74c9a952c40daefd91597947e6b9d 270 PIRSF PIRSF000161 3 270 7.8E-87 T 17-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VI35_13120 15c74c9a952c40daefd91597947e6b9d 270 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 5 268 34.707 T 17-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VI35_13120 15c74c9a952c40daefd91597947e6b9d 270 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 5 128 5.4E-40 T 17-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VI35_13120 15c74c9a952c40daefd91597947e6b9d 270 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 131 267 1.1E-41 T 17-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VI35_13120 15c74c9a952c40daefd91597947e6b9d 270 Gene3D G3DSA:3.30.360.10 130 237 3.2E-100 T 17-10-2018 VI35_13120 15c74c9a952c40daefd91597947e6b9d 270 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 153 170 - T 17-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VI35_13120 15c74c9a952c40daefd91597947e6b9d 270 SUPERFAMILY SSF51735 3 269 1.91E-50 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_13120 15c74c9a952c40daefd91597947e6b9d 270 Gene3D G3DSA:3.40.50.720 6 267 3.2E-100 T 17-10-2018 VI35_13120 15c74c9a952c40daefd91597947e6b9d 270 SUPERFAMILY SSF55347 130 239 2.01E-37 T 17-10-2018 VI35_12585 04f5e4098473e7e99417276e91f8e955 241 SMART SM00479 37 222 3.1E-37 T 17-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VI35_12585 04f5e4098473e7e99417276e91f8e955 241 Pfam PF00929 Exonuclease 39 213 2.3E-39 T 17-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VI35_12585 04f5e4098473e7e99417276e91f8e955 241 Hamap MF_00157 Ribonuclease T [rnt]. 1 241 120.122 T 17-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 VI35_12585 04f5e4098473e7e99417276e91f8e955 241 Gene3D G3DSA:3.30.420.10 28 234 6.1E-58 T 17-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VI35_12585 04f5e4098473e7e99417276e91f8e955 241 SUPERFAMILY SSF53098 28 226 2.55E-58 T 17-10-2018 IPR012337 Ribonuclease H-like superfamily VI35_12585 04f5e4098473e7e99417276e91f8e955 241 TIGRFAM TIGR01298 RNaseT: ribonuclease T 29 227 8.0E-107 T 17-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 VI35_14685 b7671924630174bb0bc4dc44ab5ff015 373 Gene3D G3DSA:3.40.47.10 1 214 4.5E-58 T 17-10-2018 IPR016039 Thiolase-like GO:0003824 VI35_14685 b7671924630174bb0bc4dc44ab5ff015 373 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 147 163 - T 17-10-2018 IPR018201 Beta-ketoacyl synthase, active site VI35_14685 b7671924630174bb0bc4dc44ab5ff015 373 Gene3D G3DSA:3.40.47.10 219 373 4.4E-37 T 17-10-2018 IPR016039 Thiolase-like GO:0003824 VI35_14685 b7671924630174bb0bc4dc44ab5ff015 373 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 150 215 1.0E-18 T 17-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 VI35_14685 b7671924630174bb0bc4dc44ab5ff015 373 SUPERFAMILY SSF53901 3 371 8.61E-53 T 17-10-2018 IPR016039 Thiolase-like GO:0003824 VI35_14685 b7671924630174bb0bc4dc44ab5ff015 373 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 282 371 5.1E-21 T 17-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 VI35_14360 665b3f4d695131418ebe9ddc9bbab5cb 387 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 34 379 3.8E-49 T 17-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VI35_14360 665b3f4d695131418ebe9ddc9bbab5cb 387 SUPERFAMILY SSF111369 50 275 3.53E-22 T 17-10-2018 VI35_14360 665b3f4d695131418ebe9ddc9bbab5cb 387 Gene3D G3DSA:2.40.420.20 42 371 2.2E-87 T 17-10-2018 VI35_14360 665b3f4d695131418ebe9ddc9bbab5cb 387 Gene3D G3DSA:2.40.30.170 47 310 2.2E-87 T 17-10-2018 VI35_14360 665b3f4d695131418ebe9ddc9bbab5cb 387 Gene3D G3DSA:2.40.50.100 58 220 2.2E-87 T 17-10-2018 VI35_14360 665b3f4d695131418ebe9ddc9bbab5cb 387 Gene3D G3DSA:1.10.287.470 92 183 2.2E-87 T 17-10-2018 VI35_14360 665b3f4d695131418ebe9ddc9bbab5cb 387 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 58 261 7.5E-16 T 17-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VI35_15550 503a76c4da4407173275202416f3620c 262 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 167 185 - T 17-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 VI35_15550 503a76c4da4407173275202416f3620c 262 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 3 249 1.1E-95 T 17-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 VI35_15550 503a76c4da4407173275202416f3620c 262 Gene3D G3DSA:3.90.230.10 1 259 4.3E-110 T 17-10-2018 VI35_15550 503a76c4da4407173275202416f3620c 262 Pfam PF00557 Metallopeptidase family M24 12 241 1.1E-53 T 17-10-2018 IPR000994 Peptidase M24 VI35_15550 503a76c4da4407173275202416f3620c 262 Hamap MF_01974 Methionine aminopeptidase [map]. 3 250 41.468 T 17-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 VI35_15550 503a76c4da4407173275202416f3620c 262 SUPERFAMILY SSF55920 3 252 9.94E-90 T 17-10-2018 IPR036005 Creatinase/aminopeptidase-like VI35_15550 503a76c4da4407173275202416f3620c 262 PRINTS PR00599 Methionine aminopeptidase-1 signature 69 82 4.9E-22 T 17-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 VI35_15550 503a76c4da4407173275202416f3620c 262 PRINTS PR00599 Methionine aminopeptidase-1 signature 161 173 4.9E-22 T 17-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 VI35_15550 503a76c4da4407173275202416f3620c 262 PRINTS PR00599 Methionine aminopeptidase-1 signature 91 107 4.9E-22 T 17-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 VI35_15550 503a76c4da4407173275202416f3620c 262 PRINTS PR00599 Methionine aminopeptidase-1 signature 191 203 4.9E-22 T 17-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 VI35_18175 e7b31a4721c59b173005cf95d4b02694 152 Pfam PF01475 Ferric uptake regulator family 17 135 5.2E-17 T 17-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 VI35_18175 e7b31a4721c59b173005cf95d4b02694 152 SUPERFAMILY SSF46785 9 140 8.79E-35 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_18175 e7b31a4721c59b173005cf95d4b02694 152 Gene3D G3DSA:1.10.10.10 1 86 3.4E-35 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_18175 e7b31a4721c59b173005cf95d4b02694 152 Gene3D G3DSA:3.30.1490.190 87 145 2.7E-15 T 17-10-2018 VI35_14895 5b550c8bcd44f515d21ab8b7b3a573c0 315 PIRSF PIRSF029038 1 314 1.0E-143 T 17-10-2018 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 VI35_14895 5b550c8bcd44f515d21ab8b7b3a573c0 315 Hamap MF_01848 Ribosomal RNA large subunit methyltransferase F [rlmF]. 6 304 55.183 T 17-10-2018 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 VI35_14895 5b550c8bcd44f515d21ab8b7b3a573c0 315 SUPERFAMILY SSF53335 45 301 1.37E-28 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_14895 5b550c8bcd44f515d21ab8b7b3a573c0 315 Pfam PF05971 Protein of unknown function (DUF890) 5 302 2.7E-124 T 17-10-2018 IPR010286 Ribosomal RNA large subunit methyltransferase F-like GO:0008168 VI35_14895 5b550c8bcd44f515d21ab8b7b3a573c0 315 Gene3D G3DSA:3.40.50.150 39 302 3.8E-76 T 17-10-2018 VI35_02770 0e1503ec02ac5bcc90f2b0a93eae8444 524 SMART SM00382 19 171 3.5E-9 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_02770 0e1503ec02ac5bcc90f2b0a93eae8444 524 SUPERFAMILY SSF52540 7 236 1.7E-33 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_02770 0e1503ec02ac5bcc90f2b0a93eae8444 524 Gene3D G3DSA:3.90.70.10 315 415 9.3E-54 T 17-10-2018 VI35_02770 0e1503ec02ac5bcc90f2b0a93eae8444 524 Pfam PF01471 Putative peptidoglycan binding domain 430 481 2.5E-10 T 17-10-2018 IPR002477 Peptidoglycan binding-like VI35_02770 0e1503ec02ac5bcc90f2b0a93eae8444 524 Gene3D G3DSA:1.10.101.10 416 485 9.3E-54 T 17-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 VI35_02770 0e1503ec02ac5bcc90f2b0a93eae8444 524 Pfam PF13401 AAA domain 19 148 4.7E-25 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_02770 0e1503ec02ac5bcc90f2b0a93eae8444 524 Gene3D G3DSA:3.40.50.300 4 162 1.6E-15 T 17-10-2018 VI35_02770 0e1503ec02ac5bcc90f2b0a93eae8444 524 SUPERFAMILY SSF47090 421 492 2.04E-10 T 17-10-2018 IPR036365 PGBD-like superfamily VI35_08415 7cc9b35f51c987627fdaf59b5de42d70 143 TIGRFAM TIGR03357 VI_zyme: type VI secretion system lysozyme-like protein 13 142 3.2E-40 T 17-10-2018 IPR017737 Type VI secretion system, lysozyme-related protein VI35_08415 7cc9b35f51c987627fdaf59b5de42d70 143 SUPERFAMILY SSF160719 34 136 9.68E-21 T 17-10-2018 VI35_08415 7cc9b35f51c987627fdaf59b5de42d70 143 Pfam PF04965 Gene 25-like lysozyme 34 122 1.0E-18 T 17-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD VI35_08415 7cc9b35f51c987627fdaf59b5de42d70 143 Gene3D G3DSA:3.10.450.40 29 137 2.5E-11 T 17-10-2018 VI35_12140 c90d2aa4fc089a2b6af80f64b27f1bb1 95 SMART SM00360 5 78 1.7E-27 T 17-10-2018 IPR000504 RNA recognition motif domain GO:0003676 VI35_12140 c90d2aa4fc089a2b6af80f64b27f1bb1 95 Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 76 2.0E-22 T 17-10-2018 IPR000504 RNA recognition motif domain GO:0003676 VI35_12140 c90d2aa4fc089a2b6af80f64b27f1bb1 95 Gene3D G3DSA:3.30.70.330 2 95 1.8E-29 T 17-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily VI35_12140 c90d2aa4fc089a2b6af80f64b27f1bb1 95 SUPERFAMILY SSF54928 3 93 1.75E-30 T 17-10-2018 IPR035979 RNA-binding domain superfamily GO:0003676 VI35_13605 e4f230f96a6e6bbe3bd67e31c8f9bab9 402 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 2 401 7.7E-64 T 17-10-2018 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 VI35_13605 e4f230f96a6e6bbe3bd67e31c8f9bab9 402 SUPERFAMILY SSF64518 1 402 2.22E-65 T 17-10-2018 VI35_13605 e4f230f96a6e6bbe3bd67e31c8f9bab9 402 Gene3D G3DSA:1.20.1330.10 266 393 3.7E-11 T 17-10-2018 VI35_13605 e4f230f96a6e6bbe3bd67e31c8f9bab9 402 Gene3D G3DSA:1.20.1330.10 40 218 2.4E-40 T 17-10-2018 VI35_13605 e4f230f96a6e6bbe3bd67e31c8f9bab9 402 Pfam PF00669 Bacterial flagellin N-terminal helical region 3 140 3.4E-12 T 17-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VI35_14605 0df4ff3d5f88677020d7fc5b030cf5ba 819 Gene3D G3DSA:3.30.2130.10 302 463 5.1E-46 T 17-10-2018 VI35_14605 0df4ff3d5f88677020d7fc5b030cf5ba 819 SUPERFAMILY SSF55347 614 797 3.66E-48 T 17-10-2018 VI35_14605 0df4ff3d5f88677020d7fc5b030cf5ba 819 SUPERFAMILY SSF55021 383 476 4.58E-22 T 17-10-2018 VI35_14605 0df4ff3d5f88677020d7fc5b030cf5ba 819 Pfam PF01842 ACT domain 324 381 3.1E-9 T 17-10-2018 IPR002912 ACT domain VI35_14605 0df4ff3d5f88677020d7fc5b030cf5ba 819 Pfam PF13840 ACT domain 395 456 9.3E-7 T 17-10-2018 IPR027795 CASTOR, ACT domain VI35_14605 0df4ff3d5f88677020d7fc5b030cf5ba 819 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 472 606 1.3E-25 T 17-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 VI35_14605 0df4ff3d5f88677020d7fc5b030cf5ba 819 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 660 682 - T 17-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 VI35_14605 0df4ff3d5f88677020d7fc5b030cf5ba 819 SUPERFAMILY SSF53633 1 295 1.23E-71 T 17-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VI35_14605 0df4ff3d5f88677020d7fc5b030cf5ba 819 ProSitePatterns PS00324 Aspartokinase signature. 3 11 - T 17-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VI35_14605 0df4ff3d5f88677020d7fc5b030cf5ba 819 Gene3D G3DSA:3.40.50.720 466 811 2.1E-115 T 17-10-2018 VI35_14605 0df4ff3d5f88677020d7fc5b030cf5ba 819 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 3 460 4.7E-129 T 17-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VI35_14605 0df4ff3d5f88677020d7fc5b030cf5ba 819 SUPERFAMILY SSF55021 303 381 1.15E-19 T 17-10-2018 VI35_14605 0df4ff3d5f88677020d7fc5b030cf5ba 819 Pfam PF00696 Amino acid kinase family 2 284 6.7E-41 T 17-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 VI35_14605 0df4ff3d5f88677020d7fc5b030cf5ba 819 Pfam PF00742 Homoserine dehydrogenase 614 810 7.7E-46 T 17-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 VI35_14605 0df4ff3d5f88677020d7fc5b030cf5ba 819 Gene3D G3DSA:1.20.120.1320 41 142 1.0E-82 T 17-10-2018 VI35_14605 0df4ff3d5f88677020d7fc5b030cf5ba 819 SUPERFAMILY SSF51735 463 636 3.69E-35 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_14605 0df4ff3d5f88677020d7fc5b030cf5ba 819 PIRSF PIRSF000727 1 817 0.0 T 17-10-2018 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I GO:0004072|GO:0004412|GO:0009067|GO:0055114 KEGG: 00260+1.1.1.3+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+1.1.1.3+2.7.2.4|KEGG: 00300+1.1.1.3+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VI35_14605 0df4ff3d5f88677020d7fc5b030cf5ba 819 Gene3D G3DSA:3.40.1160.10 3 295 1.0E-82 T 17-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VI35_14605 0df4ff3d5f88677020d7fc5b030cf5ba 819 Gene3D G3DSA:3.30.360.10 625 795 2.1E-115 T 17-10-2018 VI35_08185 7dec7bbf9bef2f99311b6470e3d88d44 935 Gene3D G3DSA:1.10.45.10 472 511 2.4E-8 T 17-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 VI35_08185 7dec7bbf9bef2f99311b6470e3d88d44 935 Gene3D G3DSA:1.10.1060.10 512 626 5.6E-11 T 17-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VI35_08185 7dec7bbf9bef2f99311b6470e3d88d44 935 SUPERFAMILY SSF56176 5 263 1.45E-56 T 17-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 VI35_08185 7dec7bbf9bef2f99311b6470e3d88d44 935 Pfam PF01565 FAD binding domain 40 175 1.6E-27 T 17-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 VI35_08185 7dec7bbf9bef2f99311b6470e3d88d44 935 SUPERFAMILY SSF46548 499 621 6.45E-22 T 17-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VI35_08185 7dec7bbf9bef2f99311b6470e3d88d44 935 Gene3D G3DSA:3.30.43.10 4 89 4.8E-7 T 17-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 VI35_08185 7dec7bbf9bef2f99311b6470e3d88d44 935 SUPERFAMILY SSF55103 239 516 7.03E-58 T 17-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 VI35_08185 7dec7bbf9bef2f99311b6470e3d88d44 935 Pfam PF13183 4Fe-4S dicluster domain 534 604 6.3E-9 T 17-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VI35_08185 7dec7bbf9bef2f99311b6470e3d88d44 935 Gene3D G3DSA:3.30.70.2740 388 471 3.4E-9 T 17-10-2018 VI35_08185 7dec7bbf9bef2f99311b6470e3d88d44 935 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 536 547 - T 17-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VI35_08185 7dec7bbf9bef2f99311b6470e3d88d44 935 Pfam PF02754 Cysteine-rich domain 708 778 0.038 T 17-10-2018 IPR004017 Cysteine-rich domain VI35_08185 7dec7bbf9bef2f99311b6470e3d88d44 935 Pfam PF02913 FAD linked oxidases, C-terminal domain 267 510 2.0E-59 T 17-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 VI35_05790 253ef5f4ac587ae5b0bc53c9229b97fd 873 SUPERFAMILY SSF56712 3 612 3.01E-196 T 17-10-2018 IPR023405 DNA topoisomerase, type IA, core domain VI35_05790 253ef5f4ac587ae5b0bc53c9229b97fd 873 Pfam PF01751 Toprim domain 5 145 3.3E-32 T 17-10-2018 IPR006171 TOPRIM domain VI35_05790 253ef5f4ac587ae5b0bc53c9229b97fd 873 Pfam PF01131 DNA topoisomerase 160 568 7.8E-122 T 17-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VI35_05790 253ef5f4ac587ae5b0bc53c9229b97fd 873 Hamap MF_00952 DNA topoisomerase 1 [topA]. 3 735 54.354 T 17-10-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 VI35_05790 253ef5f4ac587ae5b0bc53c9229b97fd 873 Gene3D G3DSA:3.30.65.10 747 810 7.9E-31 T 17-10-2018 VI35_05790 253ef5f4ac587ae5b0bc53c9229b97fd 873 Gene3D G3DSA:1.10.460.10 168 574 6.3E-157 T 17-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 VI35_05790 253ef5f4ac587ae5b0bc53c9229b97fd 873 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 312 326 - T 17-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 VI35_05790 253ef5f4ac587ae5b0bc53c9229b97fd 873 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 600 625 1.6E-5 T 17-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 VI35_05790 253ef5f4ac587ae5b0bc53c9229b97fd 873 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 712 748 5.1E-10 T 17-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 VI35_05790 253ef5f4ac587ae5b0bc53c9229b97fd 873 SUPERFAMILY SSF57783 747 810 1.5E-19 T 17-10-2018 VI35_05790 253ef5f4ac587ae5b0bc53c9229b97fd 873 Gene3D G3DSA:2.70.20.10 216 476 6.3E-157 T 17-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 VI35_05790 253ef5f4ac587ae5b0bc53c9229b97fd 873 SUPERFAMILY SSF57783 812 865 4.08E-21 T 17-10-2018 VI35_05790 253ef5f4ac587ae5b0bc53c9229b97fd 873 Gene3D G3DSA:3.40.50.140 1 166 1.0E-64 T 17-10-2018 VI35_05790 253ef5f4ac587ae5b0bc53c9229b97fd 873 SUPERFAMILY SSF57783 702 746 9.86E-7 T 17-10-2018 VI35_05790 253ef5f4ac587ae5b0bc53c9229b97fd 873 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 194 212 7.8E-37 T 17-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VI35_05790 253ef5f4ac587ae5b0bc53c9229b97fd 873 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 493 507 7.8E-37 T 17-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VI35_05790 253ef5f4ac587ae5b0bc53c9229b97fd 873 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 393 409 7.8E-37 T 17-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VI35_05790 253ef5f4ac587ae5b0bc53c9229b97fd 873 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 317 326 7.8E-37 T 17-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VI35_05790 253ef5f4ac587ae5b0bc53c9229b97fd 873 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 109 122 7.8E-37 T 17-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VI35_05790 253ef5f4ac587ae5b0bc53c9229b97fd 873 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 5 638 7.7E-244 T 17-10-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 VI35_05790 253ef5f4ac587ae5b0bc53c9229b97fd 873 Gene3D G3DSA:2.20.25.10 811 867 7.9E-27 T 17-10-2018 VI35_05790 253ef5f4ac587ae5b0bc53c9229b97fd 873 SMART SM00437 275 530 7.9E-115 T 17-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 VI35_05790 253ef5f4ac587ae5b0bc53c9229b97fd 873 Gene3D G3DSA:1.10.290.10 283 407 6.3E-157 T 17-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 VI35_05790 253ef5f4ac587ae5b0bc53c9229b97fd 873 Pfam PF08272 Topoisomerase I zinc-ribbon-like 761 796 1.6E-12 T 17-10-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 VI35_05790 253ef5f4ac587ae5b0bc53c9229b97fd 873 Pfam PF08272 Topoisomerase I zinc-ribbon-like 827 865 1.0E-20 T 17-10-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 VI35_05790 253ef5f4ac587ae5b0bc53c9229b97fd 873 SMART SM00436 136 224 4.1E-48 T 17-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 VI35_05790 253ef5f4ac587ae5b0bc53c9229b97fd 873 SMART SM00493 3 135 1.1E-28 T 17-10-2018 IPR006171 TOPRIM domain VI35_18155 09c4addb80f800cec6e906bcb90facb9 236 Gene3D G3DSA:3.40.50.150 3 231 2.9E-58 T 17-10-2018 VI35_18155 09c4addb80f800cec6e906bcb90facb9 236 SUPERFAMILY SSF53335 7 166 1.94E-30 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_18155 09c4addb80f800cec6e906bcb90facb9 236 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 110 116 - T 17-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 VI35_18155 09c4addb80f800cec6e906bcb90facb9 236 Hamap MF_01872 tRNA1(Val) (adenine(37)-N6)-methyltransferase [yfiC]. 5 236 53.408 T 17-10-2018 IPR022882 tRNA1(Val) (adenine(37)-N6)-methyltransferase GO:0016430 VI35_18155 09c4addb80f800cec6e906bcb90facb9 236 Pfam PF05175 Methyltransferase small domain 37 133 1.2E-12 T 17-10-2018 IPR007848 Methyltransferase small domain GO:0008168 VI35_15260 aa09b8cbd56509bb12883b5b6bc4d3b1 230 Pfam PF12431 Transcriptional regulator 133 162 3.7E-6 T 17-10-2018 IPR028141 Transcriptional regulator VI35_15260 aa09b8cbd56509bb12883b5b6bc4d3b1 230 Gene3D G3DSA:3.40.50.12740 5 209 2.0E-24 T 17-10-2018 VI35_15260 aa09b8cbd56509bb12883b5b6bc4d3b1 230 SUPERFAMILY SSF52172 2 129 1.57E-25 T 17-10-2018 IPR011006 CheY-like superfamily VI35_15260 aa09b8cbd56509bb12883b5b6bc4d3b1 230 SMART SM00448 4 117 6.0E-16 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_15260 aa09b8cbd56509bb12883b5b6bc4d3b1 230 PIRSF PIRSF006171 2 230 4.0E-63 T 17-10-2018 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0000160|GO:0003700 VI35_15260 aa09b8cbd56509bb12883b5b6bc4d3b1 230 Pfam PF00072 Response regulator receiver domain 7 116 5.5E-17 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_11370 a1eb32059478c851a3886f28f30489b6 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 109 122 2.0E-6 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_11370 a1eb32059478c851a3886f28f30489b6 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 140 156 2.0E-6 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_11370 a1eb32059478c851a3886f28f30489b6 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 187 200 2.0E-6 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_11370 a1eb32059478c851a3886f28f30489b6 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 6 17 2.0E-6 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_11370 a1eb32059478c851a3886f28f30489b6 226 TIGRFAM TIGR02254 YjjG/YfnB: noncanonical pyrimidine nucleotidase, YjjG family 6 220 1.1E-53 T 17-10-2018 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB GO:0016787 VI35_11370 a1eb32059478c851a3886f28f30489b6 226 SUPERFAMILY SSF56784 6 223 1.58E-45 T 17-10-2018 IPR036412 HAD-like superfamily VI35_11370 a1eb32059478c851a3886f28f30489b6 226 Gene3D G3DSA:3.40.50.1000 8 218 3.5E-57 T 17-10-2018 IPR023214 HAD superfamily VI35_11370 a1eb32059478c851a3886f28f30489b6 226 Pfam PF13419 Haloacid dehalogenase-like hydrolase 9 197 1.2E-21 T 17-10-2018 VI35_11370 a1eb32059478c851a3886f28f30489b6 226 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 71 198 3.5E-10 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_11370 a1eb32059478c851a3886f28f30489b6 226 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 91 192 3.7E-13 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_11370 a1eb32059478c851a3886f28f30489b6 226 Gene3D G3DSA:1.10.150.240 19 98 3.5E-57 T 17-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 VI35_01155 cf1eac9c7b9d2d2841986728db3c8298 181 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 6 111 1.1E-14 T 17-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 VI35_01155 cf1eac9c7b9d2d2841986728db3c8298 181 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 102 1.5E-15 T 17-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 VI35_01155 cf1eac9c7b9d2d2841986728db3c8298 181 SUPERFAMILY SSF55083 3 102 1.31E-20 T 17-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 VI35_01155 cf1eac9c7b9d2d2841986728db3c8298 181 Gene3D G3DSA:3.30.70.560 2 111 1.2E-18 T 17-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 VI35_21230 9b3f25ed39a695b79d533b90948e9719 244 SUPERFAMILY SSF52540 1 238 2.18E-73 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_21230 9b3f25ed39a695b79d533b90948e9719 244 Gene3D G3DSA:3.40.50.300 1 244 1.7E-75 T 17-10-2018 VI35_21230 9b3f25ed39a695b79d533b90948e9719 244 Pfam PF00005 ABC transporter 17 168 5.2E-30 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_21230 9b3f25ed39a695b79d533b90948e9719 244 SMART SM00382 26 216 4.6E-17 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_21230 9b3f25ed39a695b79d533b90948e9719 244 PIRSF PIRSF039085 1 244 2.0E-99 T 17-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 VI35_21230 9b3f25ed39a695b79d533b90948e9719 244 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_16285 2a15357afeab911a0d0939fd8d50c330 269 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 169 255 1.6E-27 T 17-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain VI35_16285 2a15357afeab911a0d0939fd8d50c330 269 Gene3D G3DSA:3.10.50.40 150 256 2.6E-42 T 17-10-2018 VI35_16285 2a15357afeab911a0d0939fd8d50c330 269 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 41 161 9.3E-36 T 17-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 VI35_16285 2a15357afeab911a0d0939fd8d50c330 269 SUPERFAMILY SSF54534 52 257 8.11E-65 T 17-10-2018 VI35_16285 2a15357afeab911a0d0939fd8d50c330 269 Gene3D G3DSA:1.10.287.460 35 149 1.3E-31 T 17-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 VI35_13595 30cdfbb9e9127ac783961db05f801930 496 Pfam PF02541 Ppx/GppA phosphatase family 19 300 4.0E-85 T 17-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 VI35_13595 30cdfbb9e9127ac783961db05f801930 496 SUPERFAMILY SSF53067 5 126 6.08E-37 T 17-10-2018 VI35_13595 30cdfbb9e9127ac783961db05f801930 496 PIRSF PIRSF001267 1 495 2.1E-191 T 17-10-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 VI35_13595 30cdfbb9e9127ac783961db05f801930 496 Gene3D G3DSA:3.30.420.40 7 296 7.9E-90 T 17-10-2018 VI35_13595 30cdfbb9e9127ac783961db05f801930 496 Gene3D G3DSA:3.30.420.150 110 288 7.9E-90 T 17-10-2018 VI35_13595 30cdfbb9e9127ac783961db05f801930 496 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 6 298 1.7E-100 T 17-10-2018 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 VI35_13595 30cdfbb9e9127ac783961db05f801930 496 SUPERFAMILY SSF109604 306 494 2.45E-50 T 17-10-2018 VI35_13595 30cdfbb9e9127ac783961db05f801930 496 Gene3D G3DSA:1.10.3210.10 303 495 7.6E-63 T 17-10-2018 VI35_13595 30cdfbb9e9127ac783961db05f801930 496 SUPERFAMILY SSF53067 130 304 3.05E-45 T 17-10-2018 VI35_17205 e5c7eb68ad03f9decb3b614b3ad7329b 289 SMART SM00342 27 111 1.1E-24 T 17-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VI35_17205 e5c7eb68ad03f9decb3b614b3ad7329b 289 SUPERFAMILY SSF46689 63 119 1.25E-10 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_17205 e5c7eb68ad03f9decb3b614b3ad7329b 289 Pfam PF06445 GyrI-like small molecule binding domain 134 288 1.8E-30 T 17-10-2018 IPR029442 GyrI-like small molecule binding domain VI35_17205 e5c7eb68ad03f9decb3b614b3ad7329b 289 Gene3D G3DSA:1.10.10.60 65 124 2.0E-14 T 17-10-2018 VI35_17205 e5c7eb68ad03f9decb3b614b3ad7329b 289 SMART SM00871 134 289 8.5E-34 T 17-10-2018 IPR010499 Bacterial transcription activator, effector binding VI35_17205 e5c7eb68ad03f9decb3b614b3ad7329b 289 Pfam PF12833 Helix-turn-helix domain 33 112 3.8E-22 T 17-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VI35_17205 e5c7eb68ad03f9decb3b614b3ad7329b 289 Gene3D G3DSA:1.10.10.60 1 64 2.2E-14 T 17-10-2018 VI35_17205 e5c7eb68ad03f9decb3b614b3ad7329b 289 Gene3D G3DSA:3.20.80.10 134 289 4.1E-32 T 17-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily VI35_17205 e5c7eb68ad03f9decb3b614b3ad7329b 289 SUPERFAMILY SSF46689 11 61 6.72E-10 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_17205 e5c7eb68ad03f9decb3b614b3ad7329b 289 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 95 111 9.7E-8 T 17-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VI35_17205 e5c7eb68ad03f9decb3b614b3ad7329b 289 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 80 95 9.7E-8 T 17-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VI35_17205 e5c7eb68ad03f9decb3b614b3ad7329b 289 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 64 107 - T 17-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VI35_17205 e5c7eb68ad03f9decb3b614b3ad7329b 289 SUPERFAMILY SSF55136 134 288 3.66E-30 T 17-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily VI35_05780 26763052879f1d389334ff6f35be53b9 335 Pfam PF08496 Peptidase family S49 N-terminal 3 146 1.9E-51 T 17-10-2018 IPR013703 Peptidase S49, N-terminal proteobacteria GO:0004252|GO:0005886 VI35_05780 26763052879f1d389334ff6f35be53b9 335 SUPERFAMILY SSF52096 90 287 4.97E-29 T 17-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VI35_05780 26763052879f1d389334ff6f35be53b9 335 Gene3D G3DSA:3.90.226.10 123 289 4.8E-41 T 17-10-2018 VI35_05780 26763052879f1d389334ff6f35be53b9 335 Gene3D G3DSA:3.40.1750.20 190 256 4.8E-41 T 17-10-2018 VI35_05780 26763052879f1d389334ff6f35be53b9 335 Pfam PF01343 Peptidase family S49 149 297 5.0E-44 T 17-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 VI35_13565 831f7bd98854e9aa4302cf83c7bbb9e0 344 SMART SM00388 122 188 4.8E-13 T 17-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VI35_13565 831f7bd98854e9aa4302cf83c7bbb9e0 344 Pfam PF13188 PAS domain 17 71 1.0E-7 T 17-10-2018 IPR000014 PAS domain VI35_13565 831f7bd98854e9aa4302cf83c7bbb9e0 344 Gene3D G3DSA:3.30.450.20 8 109 1.0E-6 T 17-10-2018 VI35_13565 831f7bd98854e9aa4302cf83c7bbb9e0 344 Gene3D G3DSA:3.30.565.10 191 341 6.8E-37 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_13565 831f7bd98854e9aa4302cf83c7bbb9e0 344 SUPERFAMILY SSF55785 20 100 3.66E-9 T 17-10-2018 IPR035965 PAS domain superfamily VI35_13565 831f7bd98854e9aa4302cf83c7bbb9e0 344 Gene3D G3DSA:1.10.287.130 110 186 1.8E-12 T 17-10-2018 VI35_13565 831f7bd98854e9aa4302cf83c7bbb9e0 344 Pfam PF00512 His Kinase A (phospho-acceptor) domain 122 186 6.4E-11 T 17-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VI35_13565 831f7bd98854e9aa4302cf83c7bbb9e0 344 PRINTS PR00344 Bacterial sensor protein C-terminal signature 319 332 1.3E-18 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_13565 831f7bd98854e9aa4302cf83c7bbb9e0 344 PRINTS PR00344 Bacterial sensor protein C-terminal signature 266 280 1.3E-18 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_13565 831f7bd98854e9aa4302cf83c7bbb9e0 344 PRINTS PR00344 Bacterial sensor protein C-terminal signature 295 313 1.3E-18 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_13565 831f7bd98854e9aa4302cf83c7bbb9e0 344 PRINTS PR00344 Bacterial sensor protein C-terminal signature 284 294 1.3E-18 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_13565 831f7bd98854e9aa4302cf83c7bbb9e0 344 SUPERFAMILY SSF47384 115 188 7.65E-12 T 17-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VI35_13565 831f7bd98854e9aa4302cf83c7bbb9e0 344 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 234 334 2.1E-20 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_13565 831f7bd98854e9aa4302cf83c7bbb9e0 344 SMART SM00091 16 79 5.7E-6 T 17-10-2018 IPR000014 PAS domain VI35_13565 831f7bd98854e9aa4302cf83c7bbb9e0 344 SUPERFAMILY SSF55874 177 335 6.42E-37 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_13565 831f7bd98854e9aa4302cf83c7bbb9e0 344 SMART SM00387 231 335 1.3E-27 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_18980 8bba0e170e51a2035a3cbbbd558a7afa 480 Gene3D G3DSA:3.30.470.20 357 471 4.2E-11 T 17-10-2018 VI35_18980 8bba0e170e51a2035a3cbbbd558a7afa 480 Gene3D G3DSA:3.40.50.20 202 287 4.0E-6 T 17-10-2018 VI35_18980 8bba0e170e51a2035a3cbbbd558a7afa 480 Pfam PF14401 RimK-like ATPgrasp N-terminal domain 24 165 5.5E-32 T 17-10-2018 IPR025839 RimK-like ATPgrasp N-terminal domain VI35_18980 8bba0e170e51a2035a3cbbbd558a7afa 480 SUPERFAMILY SSF56059 264 464 1.64E-26 T 17-10-2018 VI35_09820 88fee109e6416c410371b13fbe1e9851 176 Gene3D G3DSA:1.10.10.10 6 164 3.5E-33 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_09820 88fee109e6416c410371b13fbe1e9851 176 Pfam PF01047 MarR family 52 110 1.9E-11 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_09820 88fee109e6416c410371b13fbe1e9851 176 SUPERFAMILY SSF46785 22 159 7.14E-30 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_09820 88fee109e6416c410371b13fbe1e9851 176 SMART SM00347 45 146 1.7E-25 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_09820 88fee109e6416c410371b13fbe1e9851 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 136 156 3.5E-14 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_09820 88fee109e6416c410371b13fbe1e9851 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 87 102 3.5E-14 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_09820 88fee109e6416c410371b13fbe1e9851 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 70 86 3.5E-14 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_09820 88fee109e6416c410371b13fbe1e9851 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 106 122 3.5E-14 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_19645 8ce055122658ae61d67dd273ec1ca13b 350 SUPERFAMILY SSF111369 117 288 2.88E-14 T 17-10-2018 VI35_19645 8ce055122658ae61d67dd273ec1ca13b 350 SUPERFAMILY SSF111369 45 110 1.44E-7 T 17-10-2018 VI35_19645 8ce055122658ae61d67dd273ec1ca13b 350 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 42 288 1.2E-21 T 17-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VI35_19645 8ce055122658ae61d67dd273ec1ca13b 350 Gene3D G3DSA:2.40.30.170 226 344 1.1E-36 T 17-10-2018 VI35_19645 8ce055122658ae61d67dd273ec1ca13b 350 Pfam PF00529 HlyD membrane-fusion protein of T1SS 289 339 5.0E-9 T 17-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VI35_19645 8ce055122658ae61d67dd273ec1ca13b 350 Gene3D G3DSA:1.10.287.470 114 179 7.6E-7 T 17-10-2018 VI35_19645 8ce055122658ae61d67dd273ec1ca13b 350 Gene3D G3DSA:2.40.50.100 45 113 1.0E-12 T 17-10-2018 VI35_01665 35839caf187c0747b567bdb7b10454f7 256 SUPERFAMILY SSF53850 24 246 2.22E-28 T 17-10-2018 VI35_01665 35839caf187c0747b567bdb7b10454f7 256 Gene3D G3DSA:3.40.190.10 26 243 8.9E-18 T 17-10-2018 VI35_01665 35839caf187c0747b567bdb7b10454f7 256 Gene3D G3DSA:3.40.190.10 102 208 8.9E-18 T 17-10-2018 VI35_01665 35839caf187c0747b567bdb7b10454f7 256 SMART SM00062 23 247 2.6E-4 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_01665 35839caf187c0747b567bdb7b10454f7 256 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 24 244 6.9E-16 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_12335 7adbc5878e39d0017b5a1bbf7e1bfa6e 172 SMART SM00271 1 66 1.0E-6 T 17-10-2018 IPR001623 DnaJ domain VI35_12335 7adbc5878e39d0017b5a1bbf7e1bfa6e 172 SUPERFAMILY SSF47144 78 170 4.32E-23 T 17-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VI35_12335 7adbc5878e39d0017b5a1bbf7e1bfa6e 172 Gene3D G3DSA:1.20.1280.20 80 171 6.2E-26 T 17-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VI35_12335 7adbc5878e39d0017b5a1bbf7e1bfa6e 172 TIGRFAM TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB 13 169 9.9E-40 T 17-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VI35_12335 7adbc5878e39d0017b5a1bbf7e1bfa6e 172 Hamap MF_00682 Co-chaperone protein HscB [hscB]. 1 170 24.994 T 17-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VI35_12335 7adbc5878e39d0017b5a1bbf7e1bfa6e 172 Gene3D G3DSA:1.10.287.110 1 79 3.6E-23 T 17-10-2018 IPR036869 Chaperone J-domain superfamily VI35_12335 7adbc5878e39d0017b5a1bbf7e1bfa6e 172 Pfam PF07743 HSCB C-terminal oligomerisation domain 87 163 2.5E-17 T 17-10-2018 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VI35_12335 7adbc5878e39d0017b5a1bbf7e1bfa6e 172 SUPERFAMILY SSF46565 1 74 7.59E-17 T 17-10-2018 IPR036869 Chaperone J-domain superfamily VI35_19625 f61f4f04c1c19d105eb84853cc2ded7a 81 TIGRFAM TIGR03853 matur_matur: putative metal-binding protein 4 80 5.3E-35 T 17-10-2018 IPR019620 Putative metal-binding protein VI35_19625 f61f4f04c1c19d105eb84853cc2ded7a 81 Pfam PF10678 Protein of unknown function (DUF2492) 3 79 2.3E-35 T 17-10-2018 IPR019620 Putative metal-binding protein VI35_05355 a72a66555dc3984acbe21db3313b3734 829 SUPERFAMILY SSF56601 212 804 1.3E-116 T 17-10-2018 IPR012338 Beta-lactamase/transpeptidase-like VI35_05355 a72a66555dc3984acbe21db3313b3734 829 Pfam PF17092 Penicillin-binding protein OB-like domain 317 426 9.2E-29 T 17-10-2018 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VI35_05355 a72a66555dc3984acbe21db3313b3734 829 Pfam PF00905 Penicillin binding protein transpeptidase domain 429 599 1.2E-19 T 17-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 VI35_05355 a72a66555dc3984acbe21db3313b3734 829 Gene3D G3DSA:3.40.710.10 406 807 1.4E-96 T 17-10-2018 VI35_05355 a72a66555dc3984acbe21db3313b3734 829 Gene3D G3DSA:3.40.710.10 244 358 3.0E-8 T 17-10-2018 VI35_05355 a72a66555dc3984acbe21db3313b3734 829 Gene3D G3DSA:1.10.3810.10 49 243 2.4E-78 T 17-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VI35_05355 a72a66555dc3984acbe21db3313b3734 829 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 66 754 3.9E-168 T 17-10-2018 VI35_05355 a72a66555dc3984acbe21db3313b3734 829 SUPERFAMILY SSF53955 44 258 5.62E-80 T 17-10-2018 IPR023346 Lysozyme-like domain superfamily VI35_05355 a72a66555dc3984acbe21db3313b3734 829 Pfam PF00912 Transglycosylase 56 230 1.9E-62 T 17-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VI35_13200 209711d5c1729453187ab4b8ed58e14b 185 Pfam PF01169 Uncharacterized protein family UPF0016 5 80 1.1E-19 T 17-10-2018 IPR001727 Gdt1 family VI35_13200 209711d5c1729453187ab4b8ed58e14b 185 Pfam PF01169 Uncharacterized protein family UPF0016 104 178 2.5E-22 T 17-10-2018 IPR001727 Gdt1 family VI35_02325 8eb308512a2c22ddf6210a93a6873274 568 Gene3D G3DSA:3.40.50.300 295 568 2.4E-107 T 17-10-2018 VI35_02325 8eb308512a2c22ddf6210a93a6873274 568 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 42 147 5.5E-16 T 17-10-2018 IPR007831 General secretory system II, protein E, N-terminal VI35_02325 8eb308512a2c22ddf6210a93a6873274 568 Pfam PF00437 Type II/IV secretion system protein 191 458 5.9E-93 T 17-10-2018 IPR001482 Type II/IV secretion system protein VI35_02325 8eb308512a2c22ddf6210a93a6873274 568 TIGRFAM TIGR02538 type_IV_pilB: type IV-A pilus assembly ATPase PilB 9 567 1.1E-267 T 17-10-2018 IPR013374 ATPase, type IV, pilus assembly, PilB GO:0005524|GO:0008565|GO:0009297 VI35_02325 8eb308512a2c22ddf6210a93a6873274 568 Gene3D G3DSA:3.30.300.160 63 143 2.5E-5 T 17-10-2018 VI35_02325 8eb308512a2c22ddf6210a93a6873274 568 SUPERFAMILY SSF52540 167 565 5.78E-100 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_02325 8eb308512a2c22ddf6210a93a6873274 568 SUPERFAMILY SSF160246 4 141 1.73E-30 T 17-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily VI35_02325 8eb308512a2c22ddf6210a93a6873274 568 Gene3D G3DSA:3.30.450.90 153 291 1.6E-47 T 17-10-2018 VI35_02325 8eb308512a2c22ddf6210a93a6873274 568 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 386 400 - T 17-10-2018 IPR001482 Type II/IV secretion system protein VI35_17635 2e9e78a3ba99d9df671b41dc3586b956 955 Gene3D G3DSA:3.40.50.10810 150 415 8.0E-96 T 17-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily VI35_17635 2e9e78a3ba99d9df671b41dc3586b956 955 Gene3D G3DSA:3.40.50.300 416 621 1.2E-44 T 17-10-2018 VI35_17635 2e9e78a3ba99d9df671b41dc3586b956 955 Gene3D G3DSA:3.30.360.80 702 775 1.7E-30 T 17-10-2018 VI35_17635 2e9e78a3ba99d9df671b41dc3586b956 955 Pfam PF12137 RNA polymerase recycling family C-terminal 593 952 3.0E-142 T 17-10-2018 IPR022737 RNA polymerase recycling, bacterial, C-terminal GO:0016817 VI35_17635 2e9e78a3ba99d9df671b41dc3586b956 955 SMART SM00490 505 589 1.1E-13 T 17-10-2018 IPR001650 Helicase, C-terminal VI35_17635 2e9e78a3ba99d9df671b41dc3586b956 955 SUPERFAMILY SSF52540 272 632 8.45E-43 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_17635 2e9e78a3ba99d9df671b41dc3586b956 955 Gene3D G3DSA:2.30.30.140 1 53 4.5E-24 T 17-10-2018 VI35_17635 2e9e78a3ba99d9df671b41dc3586b956 955 Gene3D G3DSA:2.30.30.930 55 113 2.8E-25 T 17-10-2018 VI35_17635 2e9e78a3ba99d9df671b41dc3586b956 955 Hamap MF_01821 RNA polymerase-associated protein RapA [rapA]. 1 953 28.622 T 17-10-2018 IPR023949 RNA polymerase-associated protein RapA GO:0006355 VI35_17635 2e9e78a3ba99d9df671b41dc3586b956 955 SMART SM00487 149 341 1.7E-19 T 17-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VI35_17635 2e9e78a3ba99d9df671b41dc3586b956 955 Pfam PF00176 SNF2 family N-terminal domain 173 341 8.8E-16 T 17-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 VI35_17635 2e9e78a3ba99d9df671b41dc3586b956 955 Pfam PF00271 Helicase conserved C-terminal domain 479 589 1.0E-14 T 17-10-2018 IPR001650 Helicase, C-terminal VI35_17635 2e9e78a3ba99d9df671b41dc3586b956 955 SUPERFAMILY SSF52540 125 345 2.61E-36 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_14525 5cefa27b27fb6748f429ef17aa75c105 249 Gene3D G3DSA:3.40.50.300 7 161 9.9E-58 T 17-10-2018 VI35_14525 5cefa27b27fb6748f429ef17aa75c105 249 SUPERFAMILY SSF52540 5 165 3.57E-24 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_14525 5cefa27b27fb6748f429ef17aa75c105 249 TIGRFAM TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B 7 162 1.8E-40 T 17-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 VI35_14525 5cefa27b27fb6748f429ef17aa75c105 249 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 7 139 9.7E-49 T 17-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 VI35_14525 5cefa27b27fb6748f429ef17aa75c105 249 Gene3D G3DSA:2.20.25.120 50 82 9.9E-58 T 17-10-2018 VI35_19870 1b53e4d77391211c4c814f676c767017 92 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 17-10-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19870 1b53e4d77391211c4c814f676c767017 92 PIRSF PIRSF002144 1 92 5.0E-32 T 17-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19870 1b53e4d77391211c4c814f676c767017 92 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 25.801 T 17-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19870 1b53e4d77391211c4c814f676c767017 92 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 91 1.3E-46 T 17-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 VI35_19870 1b53e4d77391211c4c814f676c767017 92 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 8.1E-25 T 17-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19870 1b53e4d77391211c4c814f676c767017 92 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 8.1E-25 T 17-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19870 1b53e4d77391211c4c814f676c767017 92 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 8.1E-25 T 17-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19870 1b53e4d77391211c4c814f676c767017 92 Pfam PF00203 Ribosomal protein S19 3 83 5.9E-37 T 17-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19870 1b53e4d77391211c4c814f676c767017 92 Gene3D G3DSA:3.30.860.10 1 92 4.9E-44 T 17-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19870 1b53e4d77391211c4c814f676c767017 92 SUPERFAMILY SSF54570 3 84 9.16E-36 T 17-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_18730 00b15fa827f9ec28ec65fb01c575fcd8 236 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 39 223 5.6E-66 T 17-10-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 VI35_18730 00b15fa827f9ec28ec65fb01c575fcd8 236 ProSitePatterns PS00893 Nudix box signature. 121 142 - T 17-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 VI35_18730 00b15fa827f9ec28ec65fb01c575fcd8 236 SUPERFAMILY SSF55811 33 227 5.42E-46 T 17-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VI35_18730 00b15fa827f9ec28ec65fb01c575fcd8 236 Gene3D G3DSA:3.90.79.10 28 233 1.4E-62 T 17-10-2018 VI35_18730 00b15fa827f9ec28ec65fb01c575fcd8 236 Pfam PF00293 NUDIX domain 83 205 9.1E-10 T 17-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 VI35_15920 44b4eec1aed6a46e1dd606c21e7ebb74 142 Pfam PF12680 SnoaL-like domain 15 112 1.3E-12 T 17-10-2018 IPR037401 SnoaL-like domain VI35_15920 44b4eec1aed6a46e1dd606c21e7ebb74 142 Gene3D G3DSA:3.10.450.50 8 124 6.0E-20 T 17-10-2018 VI35_15920 44b4eec1aed6a46e1dd606c21e7ebb74 142 SUPERFAMILY SSF54427 1 126 1.21E-22 T 17-10-2018 IPR032710 NTF2-like domain superfamily VI35_09135 21f9144cfc7282b4058ee9fc589a7d89 333 Pfam PF13602 Zinc-binding dehydrogenase 187 330 6.6E-30 T 17-10-2018 VI35_09135 21f9144cfc7282b4058ee9fc589a7d89 333 Gene3D G3DSA:3.90.180.10 8 330 3.3E-102 T 17-10-2018 VI35_09135 21f9144cfc7282b4058ee9fc589a7d89 333 SMART SM00829 10 330 2.2E-37 T 17-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 VI35_09135 21f9144cfc7282b4058ee9fc589a7d89 333 SUPERFAMILY SSF51735 117 263 5.14E-34 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_09135 21f9144cfc7282b4058ee9fc589a7d89 333 SUPERFAMILY SSF50129 1 150 5.48E-36 T 17-10-2018 IPR011032 GroES-like superfamily VI35_09135 21f9144cfc7282b4058ee9fc589a7d89 333 Gene3D G3DSA:3.40.50.720 125 301 3.3E-102 T 17-10-2018 VI35_09135 21f9144cfc7282b4058ee9fc589a7d89 333 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 89 4.2E-8 T 17-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 VI35_09785 d62f5d9b0a3389b125b205ec11180df4 487 SUPERFAMILY SSF51412 1 477 4.06E-128 T 17-10-2018 VI35_09785 d62f5d9b0a3389b125b205ec11180df4 487 SMART SM01240 7 473 0.0 T 17-10-2018 VI35_09785 d62f5d9b0a3389b125b205ec11180df4 487 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 8 473 5.3E-162 T 17-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 VI35_09785 d62f5d9b0a3389b125b205ec11180df4 487 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 8 486 84.378 T 17-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 VI35_09785 d62f5d9b0a3389b125b205ec11180df4 487 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 295 307 - T 17-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 VI35_09785 d62f5d9b0a3389b125b205ec11180df4 487 SMART SM00116 96 144 1.8E-10 T 17-10-2018 IPR000644 CBS domain VI35_09785 d62f5d9b0a3389b125b205ec11180df4 487 SMART SM00116 158 206 2.4E-10 T 17-10-2018 IPR000644 CBS domain VI35_09785 d62f5d9b0a3389b125b205ec11180df4 487 Pfam PF00571 CBS domain 95 143 1.7E-8 T 17-10-2018 IPR000644 CBS domain VI35_09785 d62f5d9b0a3389b125b205ec11180df4 487 Pfam PF00571 CBS domain 149 202 1.5E-6 T 17-10-2018 IPR000644 CBS domain VI35_09785 d62f5d9b0a3389b125b205ec11180df4 487 Gene3D G3DSA:3.20.20.70 1 486 3.8E-210 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_09785 d62f5d9b0a3389b125b205ec11180df4 487 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 8 454 1.6E-196 T 17-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 VI35_09785 d62f5d9b0a3389b125b205ec11180df4 487 PIRSF PIRSF000130 1 487 6.5E-199 T 17-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 VI35_09785 d62f5d9b0a3389b125b205ec11180df4 487 SUPERFAMILY SSF54631 95 203 1.1E-27 T 17-10-2018 VI35_17400 e6c5218e5b224679346fea876aedcdbf 209 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 6 172 2.7E-29 T 17-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_17400 e6c5218e5b224679346fea876aedcdbf 209 Gene3D G3DSA:3.30.420.10 3 177 2.1E-49 T 17-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VI35_17400 e6c5218e5b224679346fea876aedcdbf 209 Pfam PF00929 Exonuclease 10 165 3.1E-30 T 17-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VI35_17400 e6c5218e5b224679346fea876aedcdbf 209 SUPERFAMILY SSF53098 6 175 8.39E-53 T 17-10-2018 IPR012337 Ribonuclease H-like superfamily VI35_17400 e6c5218e5b224679346fea876aedcdbf 209 SMART SM00479 8 175 7.1E-44 T 17-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VI35_13915 7ecfca18e918d3b5731e774e2f3814af 287 Gene3D G3DSA:3.40.50.10490 97 278 6.2E-41 T 17-10-2018 VI35_13915 7ecfca18e918d3b5731e774e2f3814af 287 Pfam PF01380 SIS domain 128 255 3.7E-25 T 17-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 VI35_13915 7ecfca18e918d3b5731e774e2f3814af 287 Gene3D G3DSA:1.10.10.10 2 82 1.6E-27 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_13915 7ecfca18e918d3b5731e774e2f3814af 287 Pfam PF01418 Helix-turn-helix domain, rpiR family 4 79 1.9E-29 T 17-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 VI35_13915 7ecfca18e918d3b5731e774e2f3814af 287 SUPERFAMILY SSF53697 95 278 1.42E-40 T 17-10-2018 VI35_13915 7ecfca18e918d3b5731e774e2f3814af 287 SUPERFAMILY SSF46689 3 83 3.05E-22 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_11340 daedb301cce372e0210229a22e09082b 439 Pfam PF03882 MukF winged-helix domain 4 115 5.2E-49 T 17-10-2018 IPR033439 Chromosome partition protein MukF, winged-helix domain VI35_11340 daedb301cce372e0210229a22e09082b 439 Gene3D G3DSA:1.10.225.40 351 439 4.4E-26 T 17-10-2018 IPR038198 MukF, C-terminal domain superfamily VI35_11340 daedb301cce372e0210229a22e09082b 439 SUPERFAMILY SSF46785 9 116 7.62E-38 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_11340 daedb301cce372e0210229a22e09082b 439 SUPERFAMILY SSF140570 117 279 4.32E-68 T 17-10-2018 IPR036141 MukF, middle domain superfamily VI35_11340 daedb301cce372e0210229a22e09082b 439 Pfam PF17192 MukF middle domain 120 279 1.9E-72 T 17-10-2018 IPR033440 Chromosome partition protein MukF, middle domain VI35_11340 daedb301cce372e0210229a22e09082b 439 Pfam PF17193 MukF C-terminal domain 281 439 2.1E-71 T 17-10-2018 IPR033441 Chromosome partition protein MukF, C-terminal domain VI35_11340 daedb301cce372e0210229a22e09082b 439 Gene3D G3DSA:1.20.58.590 117 309 1.7E-62 T 17-10-2018 IPR036141 MukF, middle domain superfamily VI35_11340 daedb301cce372e0210229a22e09082b 439 Gene3D G3DSA:1.10.10.10 24 116 2.9E-29 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_16580 416006ba817523b47bab8be41ebdca17 428 Pfam PF16360 GTP-binding GTPase Middle Region 114 192 8.3E-29 T 17-10-2018 IPR032305 GTP-binding protein, middle domain VI35_16580 416006ba817523b47bab8be41ebdca17 428 Pfam PF01926 50S ribosome-binding GTPase 200 318 2.2E-21 T 17-10-2018 IPR006073 GTP binding domain GO:0005525 VI35_16580 416006ba817523b47bab8be41ebdca17 428 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 267 285 8.5E-11 T 17-10-2018 IPR006073 GTP binding domain GO:0005525 VI35_16580 416006ba817523b47bab8be41ebdca17 428 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 221 239 8.5E-11 T 17-10-2018 IPR006073 GTP binding domain GO:0005525 VI35_16580 416006ba817523b47bab8be41ebdca17 428 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 200 220 8.5E-11 T 17-10-2018 IPR006073 GTP binding domain GO:0005525 VI35_16580 416006ba817523b47bab8be41ebdca17 428 Gene3D G3DSA:3.40.50.300 197 368 2.5E-39 T 17-10-2018 VI35_16580 416006ba817523b47bab8be41ebdca17 428 PIRSF PIRSF006809 3 421 5.9E-150 T 17-10-2018 IPR016496 GTPase HflX GO:0005525 VI35_16580 416006ba817523b47bab8be41ebdca17 428 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 10 360 2.3E-155 T 17-10-2018 IPR016496 GTPase HflX GO:0005525 VI35_16580 416006ba817523b47bab8be41ebdca17 428 SUPERFAMILY SSF52540 198 377 5.9E-41 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_16580 416006ba817523b47bab8be41ebdca17 428 Pfam PF13167 GTP-binding GTPase N-terminal 25 112 1.1E-30 T 17-10-2018 IPR025121 GTPase HflX, N-terminal VI35_16580 416006ba817523b47bab8be41ebdca17 428 Gene3D G3DSA:3.40.50.11060 18 138 1.6E-37 T 17-10-2018 VI35_16580 416006ba817523b47bab8be41ebdca17 428 Hamap MF_00900 GTPase HflX [hflX]. 27 390 47.84 T 17-10-2018 IPR016496 GTPase HflX GO:0005525 VI35_16580 416006ba817523b47bab8be41ebdca17 428 SUPERFAMILY SSF54980 365 422 5.25E-12 T 17-10-2018 IPR035647 EF-G domain III/V-like VI35_11080 064fc1356d28388ca0a86658afa61770 204 SUPERFAMILY SSF55729 42 175 2.61E-12 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_11080 064fc1356d28388ca0a86658afa61770 204 Gene3D G3DSA:3.40.630.30 34 199 1.6E-25 T 17-10-2018 VI35_11080 064fc1356d28388ca0a86658afa61770 204 Pfam PF00583 Acetyltransferase (GNAT) family 81 175 3.3E-6 T 17-10-2018 IPR000182 GNAT domain VI35_14550 cc32a015de0818ce011543e519b62459 154 Gene3D G3DSA:3.40.630.30 1 148 4.6E-34 T 17-10-2018 VI35_14550 cc32a015de0818ce011543e519b62459 154 SUPERFAMILY SSF55729 2 141 2.23E-26 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_14550 cc32a015de0818ce011543e519b62459 154 Pfam PF00583 Acetyltransferase (GNAT) family 37 141 8.5E-14 T 17-10-2018 IPR000182 GNAT domain VI35_17575 f0ee09c7aa5e6ce9c1dcfaa04ca8ecde 473 Gene3D G3DSA:2.60.40.2550 308 404 1.3E-23 T 17-10-2018 VI35_17575 f0ee09c7aa5e6ce9c1dcfaa04ca8ecde 473 SUPERFAMILY SSF81296 25 192 7.0E-61 T 17-10-2018 IPR014756 Immunoglobulin E-set VI35_17575 f0ee09c7aa5e6ce9c1dcfaa04ca8ecde 473 Pfam PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading 25 188 9.9E-37 T 17-10-2018 IPR004302 Cellulose/chitin-binding protein, N-terminal VI35_17575 f0ee09c7aa5e6ce9c1dcfaa04ca8ecde 473 Gene3D G3DSA:3.30.70.2150 199 307 6.2E-38 T 17-10-2018 VI35_17575 f0ee09c7aa5e6ce9c1dcfaa04ca8ecde 473 Gene3D G3DSA:2.70.50.50 23 192 1.0E-71 T 17-10-2018 VI35_11660 f4758480d8b3bbbadbfce9902948817e 524 Pfam PF06450 Bacterial Na+/H+ antiporter B (NhaB) 1 511 6.5E-283 T 17-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 VI35_11660 f4758480d8b3bbbadbfce9902948817e 524 Hamap MF_01599 Na(+)/H(+) antiporter NhaB [nhaB]. 1 524 361.286 T 17-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 VI35_11660 f4758480d8b3bbbadbfce9902948817e 524 TIGRFAM TIGR00774 NhaB: Na+/H+ antiporter NhaB 1 512 3.7E-281 T 17-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 VI35_13885 b33e9c32d0e2f460f522be40022bf360 380 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 29 377 5.2E-85 T 17-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase VI35_13885 b33e9c32d0e2f460f522be40022bf360 380 Gene3D G3DSA:3.90.1150.10 277 378 3.7E-19 T 17-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VI35_13885 b33e9c32d0e2f460f522be40022bf360 380 TIGRFAM TIGR04181 NHT_00031: aminotransferase, LLPSF_NHT_00031 family 19 376 9.1E-163 T 17-10-2018 IPR026385 Aminotransferase, LLPSF_NHT_00031 family VI35_13885 b33e9c32d0e2f460f522be40022bf360 380 Gene3D G3DSA:3.40.640.10 2 274 4.9E-84 T 17-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VI35_13885 b33e9c32d0e2f460f522be40022bf360 380 PIRSF PIRSF000390 14 379 2.2E-89 T 17-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase VI35_13885 b33e9c32d0e2f460f522be40022bf360 380 SUPERFAMILY SSF53383 16 377 3.74E-93 T 17-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VI35_07120 adeab35f387bc954286f18e28aa56a43 282 TIGRFAM TIGR00861 MIP: MIP family channel proteins 15 253 6.2E-70 T 17-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VI35_07120 adeab35f387bc954286f18e28aa56a43 282 Gene3D G3DSA:1.20.1080.10 4 259 3.1E-98 T 17-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 VI35_07120 adeab35f387bc954286f18e28aa56a43 282 Pfam PF00230 Major intrinsic protein 8 253 5.3E-64 T 17-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VI35_07120 adeab35f387bc954286f18e28aa56a43 282 ProSitePatterns PS00221 MIP family signature. 68 76 - T 17-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 VI35_07120 adeab35f387bc954286f18e28aa56a43 282 PRINTS PR00783 Major intrinsic protein family signature 50 74 1.2E-52 T 17-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VI35_07120 adeab35f387bc954286f18e28aa56a43 282 PRINTS PR00783 Major intrinsic protein family signature 153 171 1.2E-52 T 17-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VI35_07120 adeab35f387bc954286f18e28aa56a43 282 PRINTS PR00783 Major intrinsic protein family signature 87 106 1.2E-52 T 17-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VI35_07120 adeab35f387bc954286f18e28aa56a43 282 PRINTS PR00783 Major intrinsic protein family signature 186 208 1.2E-52 T 17-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VI35_07120 adeab35f387bc954286f18e28aa56a43 282 PRINTS PR00783 Major intrinsic protein family signature 11 30 1.2E-52 T 17-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VI35_07120 adeab35f387bc954286f18e28aa56a43 282 PRINTS PR00783 Major intrinsic protein family signature 236 256 1.2E-52 T 17-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VI35_07120 adeab35f387bc954286f18e28aa56a43 282 SUPERFAMILY SSF81338 9 257 7.46E-76 T 17-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 VI35_05635 72d0832651a5c925cf96bbd21daa9313 476 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 87 102 - T 17-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VI35_05635 72d0832651a5c925cf96bbd21daa9313 476 TIGRFAM TIGR00835 agcS: amino acid carrier protein 13 441 1.1E-160 T 17-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VI35_05635 72d0832651a5c925cf96bbd21daa9313 476 PRINTS PR00175 Sodium/alanine symporter signature 410 430 3.2E-60 T 17-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VI35_05635 72d0832651a5c925cf96bbd21daa9313 476 PRINTS PR00175 Sodium/alanine symporter signature 206 225 3.2E-60 T 17-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VI35_05635 72d0832651a5c925cf96bbd21daa9313 476 PRINTS PR00175 Sodium/alanine symporter signature 87 109 3.2E-60 T 17-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VI35_05635 72d0832651a5c925cf96bbd21daa9313 476 PRINTS PR00175 Sodium/alanine symporter signature 303 321 3.2E-60 T 17-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VI35_05635 72d0832651a5c925cf96bbd21daa9313 476 PRINTS PR00175 Sodium/alanine symporter signature 349 371 3.2E-60 T 17-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VI35_05635 72d0832651a5c925cf96bbd21daa9313 476 PRINTS PR00175 Sodium/alanine symporter signature 178 196 3.2E-60 T 17-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VI35_05635 72d0832651a5c925cf96bbd21daa9313 476 Pfam PF01235 Sodium:alanine symporter family 49 452 1.6E-161 T 17-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VI35_03925 891e1427420a3df9e7b489a70168c8d3 168 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 60 112 1.6E-14 T 17-10-2018 IPR010221 VCBS repeat VI35_09150 80838c3e154c827d3cfb6806cfbea867 486 SUPERFAMILY SSF56954 8 476 4.84E-98 T 17-10-2018 VI35_09150 80838c3e154c827d3cfb6806cfbea867 486 Gene3D G3DSA:2.20.200.10 107 362 9.4E-124 T 17-10-2018 VI35_09150 80838c3e154c827d3cfb6806cfbea867 486 Pfam PF02321 Outer membrane efflux protein 72 261 4.8E-22 T 17-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VI35_09150 80838c3e154c827d3cfb6806cfbea867 486 Pfam PF02321 Outer membrane efflux protein 291 470 5.3E-21 T 17-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VI35_09150 80838c3e154c827d3cfb6806cfbea867 486 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 18 473 5.8E-99 T 17-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 VI35_09150 80838c3e154c827d3cfb6806cfbea867 486 Gene3D G3DSA:1.20.1600.10 61 474 9.4E-124 T 17-10-2018 VI35_15090 fdeef1350414eacc8195519e6269b853 237 Pfam PF03099 Biotin/lipoate A/B protein ligase family 61 162 1.8E-5 T 17-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 VI35_15090 fdeef1350414eacc8195519e6269b853 237 SUPERFAMILY SSF55681 12 231 1.24E-42 T 17-10-2018 VI35_15090 fdeef1350414eacc8195519e6269b853 237 Gene3D G3DSA:3.30.930.10 10 233 1.7E-48 T 17-10-2018 VI35_09430 30f79e7928535e2f1d463a9e6b24282e 104 Pfam PF14302 Domain of unknown function (DUF4377) 26 100 1.4E-29 T 17-10-2018 IPR025485 Domain of unknown function DUF4377 VI35_01645 e596abf5126085663bd943c5d4dbcf76 461 SMART SM00304 204 256 1.9E-6 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_01645 e596abf5126085663bd943c5d4dbcf76 461 SUPERFAMILY SSF47384 242 313 1.18E-12 T 17-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VI35_01645 e596abf5126085663bd943c5d4dbcf76 461 SMART SM00387 354 461 1.2E-25 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_01645 e596abf5126085663bd943c5d4dbcf76 461 SMART SM00388 257 315 3.4E-10 T 17-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VI35_01645 e596abf5126085663bd943c5d4dbcf76 461 Pfam PF00672 HAMP domain 204 252 6.2E-8 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_01645 e596abf5126085663bd943c5d4dbcf76 461 Pfam PF00512 His Kinase A (phospho-acceptor) domain 258 304 3.9E-8 T 17-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VI35_01645 e596abf5126085663bd943c5d4dbcf76 461 Gene3D G3DSA:1.10.287.130 201 310 5.3E-20 T 17-10-2018 VI35_01645 e596abf5126085663bd943c5d4dbcf76 461 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 357 461 2.4E-19 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_01645 e596abf5126085663bd943c5d4dbcf76 461 Gene3D G3DSA:3.30.565.10 318 461 1.7E-30 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_01645 e596abf5126085663bd943c5d4dbcf76 461 PRINTS PR00344 Bacterial sensor protein C-terminal signature 447 460 3.6E-12 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_01645 e596abf5126085663bd943c5d4dbcf76 461 PRINTS PR00344 Bacterial sensor protein C-terminal signature 423 441 3.6E-12 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_01645 e596abf5126085663bd943c5d4dbcf76 461 PRINTS PR00344 Bacterial sensor protein C-terminal signature 406 416 3.6E-12 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_01645 e596abf5126085663bd943c5d4dbcf76 461 PRINTS PR00344 Bacterial sensor protein C-terminal signature 388 402 3.6E-12 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_01645 e596abf5126085663bd943c5d4dbcf76 461 SUPERFAMILY SSF55874 314 461 4.71E-33 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_15035 e8c7f7d4930bd259517af87ca6ed19a6 88 SUPERFAMILY SSF47413 4 63 5.9E-11 T 17-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VI35_15035 e8c7f7d4930bd259517af87ca6ed19a6 88 Pfam PF01381 Helix-turn-helix 12 58 5.0E-9 T 17-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VI35_15035 e8c7f7d4930bd259517af87ca6ed19a6 88 SMART SM00530 11 68 1.1E-5 T 17-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VI35_15035 e8c7f7d4930bd259517af87ca6ed19a6 88 Gene3D G3DSA:1.10.260.40 4 87 9.8E-23 T 17-10-2018 VI35_05975 33c05faa4025f786a0cc29b41be0d7d4 246 SUPERFAMILY SSF75708 35 245 7.98E-66 T 17-10-2018 VI35_05975 33c05faa4025f786a0cc29b41be0d7d4 246 Pfam PF04344 Chemotaxis phosphatase, CheZ 43 246 3.5E-77 T 17-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 VI35_05975 33c05faa4025f786a0cc29b41be0d7d4 246 PIRSF PIRSF002884 20 246 8.0E-83 T 17-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 VI35_05975 33c05faa4025f786a0cc29b41be0d7d4 246 Gene3D G3DSA:1.10.287.500 62 196 2.6E-46 T 17-10-2018 VI35_20255 5cfa069a0db855f82beaee898551116b 65 TIGRFAM TIGR03318 YdfZ_fam: putative selenium-binding protein YdfZ 1 65 9.2E-34 T 17-10-2018 IPR017704 Putative selenium-binding protein YdfZ VI35_20255 5cfa069a0db855f82beaee898551116b 65 Pfam PF14001 YdfZ protein 2 65 8.2E-33 T 17-10-2018 IPR017704 Putative selenium-binding protein YdfZ VI35_02815 1f2999f2c829f6f97861a6dac1656fa8 541 Gene3D G3DSA:3.40.449.10 26 235 5.6E-235 T 17-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 VI35_02815 1f2999f2c829f6f97861a6dac1656fa8 541 PIRSF PIRSF006294 6 541 2.7E-226 T 17-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 VI35_02815 1f2999f2c829f6f97861a6dac1656fa8 541 TIGRFAM TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP) 11 541 1.6E-276 T 17-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 VI35_02815 1f2999f2c829f6f97861a6dac1656fa8 541 Gene3D G3DSA:2.170.8.10 50 351 5.6E-235 T 17-10-2018 VI35_02815 1f2999f2c829f6f97861a6dac1656fa8 541 Pfam PF01293 Phosphoenolpyruvate carboxykinase 25 491 9.1E-211 T 17-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 VI35_02815 1f2999f2c829f6f97861a6dac1656fa8 541 ProSitePatterns PS00532 Phosphoenolpyruvate carboxykinase (ATP) signature. 266 281 - T 17-10-2018 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 VI35_02815 1f2999f2c829f6f97861a6dac1656fa8 541 SUPERFAMILY SSF53795 230 541 6.87E-128 T 17-10-2018 VI35_02815 1f2999f2c829f6f97861a6dac1656fa8 541 Gene3D G3DSA:3.90.228.20 236 526 5.6E-235 T 17-10-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 VI35_02815 1f2999f2c829f6f97861a6dac1656fa8 541 Hamap MF_00453 Phosphoenolpyruvate carboxykinase (ATP) [pckA]. 19 539 54.795 T 17-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 VI35_02815 1f2999f2c829f6f97861a6dac1656fa8 541 SUPERFAMILY SSF68923 12 228 3.31E-89 T 17-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 VI35_17470 3be626bd9b55d686a6e8ba8cab855bce 1350 SUPERFAMILY SSF81296 304 406 8.05E-21 T 17-10-2018 IPR014756 Immunoglobulin E-set VI35_17470 3be626bd9b55d686a6e8ba8cab855bce 1350 SUPERFAMILY SSF81296 173 294 1.96E-31 T 17-10-2018 IPR014756 Immunoglobulin E-set VI35_17470 3be626bd9b55d686a6e8ba8cab855bce 1350 SUPERFAMILY SSF49452 38 168 5.49E-23 T 17-10-2018 IPR013784 Carbohydrate-binding-like fold GO:0030246 VI35_17470 3be626bd9b55d686a6e8ba8cab855bce 1350 Gene3D G3DSA:3.20.20.80 403 1001 1.7E-202 T 17-10-2018 VI35_17470 3be626bd9b55d686a6e8ba8cab855bce 1350 SUPERFAMILY SSF51445 400 968 5.72E-141 T 17-10-2018 IPR017853 Glycoside hydrolase superfamily VI35_17470 3be626bd9b55d686a6e8ba8cab855bce 1350 Pfam PF03714 Bacterial pullanase-associated domain 79 168 3.5E-6 T 17-10-2018 IPR005323 Pullulanase, carbohydrate-binding module 41 GO:0005975|GO:0030246 VI35_17470 3be626bd9b55d686a6e8ba8cab855bce 1350 TIGRFAM TIGR02103 pullul_strch: alpha-1,6-glucosidases, pullulanase-type 181 1078 0.0 T 17-10-2018 IPR011839 Alpha-1,6-glucosidases, pullulanase-type GO:0005975|GO:0051060 VI35_17470 3be626bd9b55d686a6e8ba8cab855bce 1350 Gene3D G3DSA:2.60.40.1110 36 168 9.9E-28 T 17-10-2018 VI35_17470 3be626bd9b55d686a6e8ba8cab855bce 1350 SMART SM00642 512 914 0.0049 T 17-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VI35_17470 3be626bd9b55d686a6e8ba8cab855bce 1350 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 304 388 4.9E-12 T 17-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 VI35_17470 3be626bd9b55d686a6e8ba8cab855bce 1350 Gene3D G3DSA:2.60.40.1180 1002 1095 4.7E-26 T 17-10-2018 IPR013780 Glycosyl hydrolase, all-beta VI35_17470 3be626bd9b55d686a6e8ba8cab855bce 1350 Pfam PF11852 Domain of unknown function (DUF3372) 910 1077 3.1E-45 T 17-10-2018 IPR024561 Alpha-1,6-glucosidases, pullulanase-type, C-terminal VI35_17470 3be626bd9b55d686a6e8ba8cab855bce 1350 Gene3D G3DSA:2.60.40.1130 169 282 5.2E-36 T 17-10-2018 VI35_17470 3be626bd9b55d686a6e8ba8cab855bce 1350 Gene3D G3DSA:2.60.40.10 295 402 1.2E-29 T 17-10-2018 IPR013783 Immunoglobulin-like fold VI35_17470 3be626bd9b55d686a6e8ba8cab855bce 1350 SUPERFAMILY SSF51011 969 1090 5.39E-28 T 17-10-2018 VI35_02140 a7acae9fdbb8f45b1f686893a92ea17e 288 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 140 6.5E-38 T 17-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VI35_02140 a7acae9fdbb8f45b1f686893a92ea17e 288 PRINTS PR00207 Flagellin signature 76 95 1.2E-20 T 17-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VI35_02140 a7acae9fdbb8f45b1f686893a92ea17e 288 PRINTS PR00207 Flagellin signature 37 54 1.2E-20 T 17-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VI35_02140 a7acae9fdbb8f45b1f686893a92ea17e 288 PRINTS PR00207 Flagellin signature 111 134 1.2E-20 T 17-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VI35_02140 a7acae9fdbb8f45b1f686893a92ea17e 288 Gene3D G3DSA:1.20.58.1830 5 33 8.8E-58 T 17-10-2018 VI35_02140 a7acae9fdbb8f45b1f686893a92ea17e 288 Pfam PF00700 Bacterial flagellin C-terminal helical region 205 287 1.1E-24 T 17-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VI35_02140 a7acae9fdbb8f45b1f686893a92ea17e 288 Gene3D G3DSA:1.20.1330.10 45 178 8.8E-58 T 17-10-2018 VI35_02140 a7acae9fdbb8f45b1f686893a92ea17e 288 SUPERFAMILY SSF64518 1 288 1.18E-77 T 17-10-2018 VI35_02140 a7acae9fdbb8f45b1f686893a92ea17e 288 Gene3D G3DSA:1.10.8.410 235 288 1.6E-17 T 17-10-2018 VI35_02875 23786e8aaeb3dc36cec3fa6a931fdb98 394 SUPERFAMILY SSF53067 147 231 1.55E-22 T 17-10-2018 VI35_02875 23786e8aaeb3dc36cec3fa6a931fdb98 394 SUPERFAMILY SSF53067 2 144 1.02E-41 T 17-10-2018 VI35_02875 23786e8aaeb3dc36cec3fa6a931fdb98 394 Gene3D G3DSA:3.30.420.380 3 230 1.1E-83 T 17-10-2018 VI35_02875 23786e8aaeb3dc36cec3fa6a931fdb98 394 Gene3D G3DSA:3.30.1360.100 303 393 5.5E-24 T 17-10-2018 VI35_02875 23786e8aaeb3dc36cec3fa6a931fdb98 394 Gene3D G3DSA:3.30.420.370 142 208 1.1E-83 T 17-10-2018 VI35_02875 23786e8aaeb3dc36cec3fa6a931fdb98 394 TIGRFAM TIGR01709 typeII_sec_gspL: type II secretion system protein L 5 390 1.4E-100 T 17-10-2018 IPR007812 Type II secretion system protein L GO:0008565|GO:0009276|GO:0015031|GO:0016021 VI35_02875 23786e8aaeb3dc36cec3fa6a931fdb98 394 Pfam PF12693 GspL periplasmic domain 238 390 5.1E-42 T 17-10-2018 IPR025691 GspL periplasmic domain VI35_02875 23786e8aaeb3dc36cec3fa6a931fdb98 394 Pfam PF05134 Type II secretion system (T2SS), protein L 5 232 4.0E-64 T 17-10-2018 IPR024230 GspL, cytoplasmic actin-ATPase-like domain VI35_02875 23786e8aaeb3dc36cec3fa6a931fdb98 394 PIRSF PIRSF015761 2 393 5.2E-45 T 17-10-2018 IPR007812 Type II secretion system protein L GO:0008565|GO:0009276|GO:0015031|GO:0016021 VI35_08040 790cd36e85c266d426fa823cea7c6d12 198 Pfam PF13036 Peptidoglycan-synthase activator LpoB 43 187 1.5E-52 T 17-10-2018 IPR014094 Penicillin-binding protein activator LpoB VI35_08040 790cd36e85c266d426fa823cea7c6d12 198 TIGRFAM TIGR02722 lp_: uncharacterized lipoprotein 7 189 1.9E-65 T 17-10-2018 IPR014094 Penicillin-binding protein activator LpoB VI35_08040 790cd36e85c266d426fa823cea7c6d12 198 Pfam PF11684 Protein of unknown function (DUF2380) 86 191 1.4E-7 T 17-10-2018 IPR021698 Protein of unknown function DUF2380 VI35_08040 790cd36e85c266d426fa823cea7c6d12 198 Gene3D G3DSA:3.40.50.10610 41 190 4.7E-34 T 17-10-2018 VI35_14480 898d90a863c8cd9a1d464b4f978d8cfc 470 PRINTS PR01050 Pyruvate kinase family signature 294 312 2.3E-77 T 17-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_14480 898d90a863c8cd9a1d464b4f978d8cfc 470 PRINTS PR01050 Pyruvate kinase family signature 244 268 2.3E-77 T 17-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_14480 898d90a863c8cd9a1d464b4f978d8cfc 470 PRINTS PR01050 Pyruvate kinase family signature 186 200 2.3E-77 T 17-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_14480 898d90a863c8cd9a1d464b4f978d8cfc 470 PRINTS PR01050 Pyruvate kinase family signature 269 293 2.3E-77 T 17-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_14480 898d90a863c8cd9a1d464b4f978d8cfc 470 PRINTS PR01050 Pyruvate kinase family signature 59 75 2.3E-77 T 17-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_14480 898d90a863c8cd9a1d464b4f978d8cfc 470 PRINTS PR01050 Pyruvate kinase family signature 313 329 2.3E-77 T 17-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_14480 898d90a863c8cd9a1d464b4f978d8cfc 470 PRINTS PR01050 Pyruvate kinase family signature 217 243 2.3E-77 T 17-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_14480 898d90a863c8cd9a1d464b4f978d8cfc 470 Gene3D G3DSA:3.20.20.60 4 332 1.2E-145 T 17-10-2018 VI35_14480 898d90a863c8cd9a1d464b4f978d8cfc 470 Gene3D G3DSA:2.40.33.10 71 167 1.2E-145 T 17-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_14480 898d90a863c8cd9a1d464b4f978d8cfc 470 Pfam PF02887 Pyruvate kinase, alpha/beta domain 356 468 3.0E-25 T 17-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_14480 898d90a863c8cd9a1d464b4f978d8cfc 470 SUPERFAMILY SSF51621 1 339 2.37E-100 T 17-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 VI35_14480 898d90a863c8cd9a1d464b4f978d8cfc 470 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 2 469 2.3E-185 T 17-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_14480 898d90a863c8cd9a1d464b4f978d8cfc 470 ProSitePatterns PS00110 Pyruvate kinase active site signature. 215 227 - T 17-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_14480 898d90a863c8cd9a1d464b4f978d8cfc 470 Gene3D G3DSA:3.40.1380.20 336 467 5.7E-41 T 17-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_14480 898d90a863c8cd9a1d464b4f978d8cfc 470 SUPERFAMILY SSF50800 70 167 1.26E-28 T 17-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily VI35_14480 898d90a863c8cd9a1d464b4f978d8cfc 470 Pfam PF00224 Pyruvate kinase, barrel domain 1 340 1.1E-149 T 17-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_14480 898d90a863c8cd9a1d464b4f978d8cfc 470 SUPERFAMILY SSF52935 323 469 8.9E-34 T 17-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VI35_05915 a8e792d759a70109dd031813b55a2a16 357 SUPERFAMILY SSF101801 246 323 1.7E-16 T 17-10-2018 IPR036429 SpoA-like superfamily VI35_05915 a8e792d759a70109dd031813b55a2a16 357 PRINTS PR00955 Flagellar motor switch protein FliM signature 87 103 2.8E-19 T 17-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 VI35_05915 a8e792d759a70109dd031813b55a2a16 357 PRINTS PR00955 Flagellar motor switch protein FliM signature 2 15 2.8E-19 T 17-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 VI35_05915 a8e792d759a70109dd031813b55a2a16 357 PRINTS PR00955 Flagellar motor switch protein FliM signature 112 131 2.8E-19 T 17-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 VI35_05915 a8e792d759a70109dd031813b55a2a16 357 PRINTS PR00955 Flagellar motor switch protein FliM signature 210 228 2.8E-19 T 17-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 VI35_05915 a8e792d759a70109dd031813b55a2a16 357 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 249 318 1.3E-19 T 17-10-2018 IPR001543 Surface presentation of antigen (SpoA) VI35_05915 a8e792d759a70109dd031813b55a2a16 357 Gene3D G3DSA:3.40.1550.10 42 229 1.1E-53 T 17-10-2018 IPR028976 CheC-like superfamily VI35_05915 a8e792d759a70109dd031813b55a2a16 357 Pfam PF02154 Flagellar motor switch protein FliM 36 228 4.0E-79 T 17-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 VI35_05915 a8e792d759a70109dd031813b55a2a16 357 SUPERFAMILY SSF103039 4 229 4.71E-19 T 17-10-2018 IPR028976 CheC-like superfamily VI35_05915 a8e792d759a70109dd031813b55a2a16 357 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 3 318 3.1E-115 T 17-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 VI35_05915 a8e792d759a70109dd031813b55a2a16 357 PIRSF PIRSF002888 1 328 6.8E-96 T 17-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 VI35_05915 a8e792d759a70109dd031813b55a2a16 357 Gene3D G3DSA:2.30.330.10 239 326 2.9E-6 T 17-10-2018 IPR036429 SpoA-like superfamily VI35_13665 a82d9e59b7898850197f26eb3dc13616 303 SMART SM00260 17 153 1.7E-20 T 17-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VI35_13665 a82d9e59b7898850197f26eb3dc13616 303 SUPERFAMILY SSF50341 16 157 2.09E-36 T 17-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 VI35_13665 a82d9e59b7898850197f26eb3dc13616 303 Gene3D G3DSA:2.30.30.40 24 147 2.9E-28 T 17-10-2018 VI35_13665 a82d9e59b7898850197f26eb3dc13616 303 SUPERFAMILY SSF52172 176 302 5.69E-27 T 17-10-2018 IPR011006 CheY-like superfamily VI35_13665 a82d9e59b7898850197f26eb3dc13616 303 Gene3D G3DSA:3.40.50.2300 179 303 5.0E-27 T 17-10-2018 VI35_13665 a82d9e59b7898850197f26eb3dc13616 303 Pfam PF00072 Response regulator receiver domain 181 300 1.5E-18 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_13665 a82d9e59b7898850197f26eb3dc13616 303 SMART SM00448 179 299 1.9E-20 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_13665 a82d9e59b7898850197f26eb3dc13616 303 PIRSF PIRSF002867 1 303 3.0E-106 T 17-10-2018 IPR024181 Chemotaxis response regulator CheV VI35_13665 a82d9e59b7898850197f26eb3dc13616 303 Gene3D G3DSA:2.40.50.180 39 153 2.9E-28 T 17-10-2018 VI35_13665 a82d9e59b7898850197f26eb3dc13616 303 Pfam PF01584 CheW-like domain 21 155 9.9E-36 T 17-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VI35_07675 771255a097d0e1af349b479ad0f78586 331 Pfam PF00005 ABC transporter 38 189 7.5E-32 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_07675 771255a097d0e1af349b479ad0f78586 331 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 240 326 1.2E-26 T 17-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VI35_07675 771255a097d0e1af349b479ad0f78586 331 Gene3D G3DSA:3.40.50.300 6 330 2.3E-95 T 17-10-2018 VI35_07675 771255a097d0e1af349b479ad0f78586 331 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 241 308 2.7E-18 T 17-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VI35_07675 771255a097d0e1af349b479ad0f78586 331 SUPERFAMILY SSF52540 8 261 1.3E-72 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_07675 771255a097d0e1af349b479ad0f78586 331 SMART SM00382 46 239 9.2E-18 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_07675 771255a097d0e1af349b479ad0f78586 331 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_00665 c32a0fdb6b65b703c32a4376a0fcc2ef 377 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 19 375 5.7E-175 T 17-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 VI35_00665 c32a0fdb6b65b703c32a4376a0fcc2ef 377 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 308 337 - T 17-10-2018 IPR030390 RNA methyltransferase TrmA, active site VI35_00665 c32a0fdb6b65b703c32a4376a0fcc2ef 377 Hamap MF_01011 tRNA/tmRNA (uracil-C(5))-methyltransferase [trmA]. 13 375 42.958 T 17-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 VI35_00665 c32a0fdb6b65b703c32a4376a0fcc2ef 377 Gene3D G3DSA:3.40.1350.30 54 198 1.6E-137 T 17-10-2018 VI35_00665 c32a0fdb6b65b703c32a4376a0fcc2ef 377 Gene3D G3DSA:3.40.50.150 22 370 1.6E-137 T 17-10-2018 VI35_00665 c32a0fdb6b65b703c32a4376a0fcc2ef 377 SUPERFAMILY SSF53335 18 374 3.08E-51 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_00665 c32a0fdb6b65b703c32a4376a0fcc2ef 377 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 357 367 - T 17-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site VI35_00665 c32a0fdb6b65b703c32a4376a0fcc2ef 377 TIGRFAM TIGR02143 trmA_only: tRNA (uracil(54)-C(5))-methyltransferase 19 375 8.6E-172 T 17-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 VI35_14835 a2f44e04eec3613111abdbb75b90d476 156 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 21 58 4.7E-9 T 17-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 VI35_14835 a2f44e04eec3613111abdbb75b90d476 156 Gene3D G3DSA:3.10.50.40 18 156 6.8E-54 T 17-10-2018 VI35_14835 a2f44e04eec3613111abdbb75b90d476 156 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 65 153 3.7E-27 T 17-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain VI35_14835 a2f44e04eec3613111abdbb75b90d476 156 SUPERFAMILY SSF54534 23 155 1.85E-49 T 17-10-2018 VI35_03650 bf169f968649ef7bd518d656fa9cc30f 496 Pfam PF12626 Polymerase A arginine-rich C-terminus 356 489 1.1E-40 T 17-10-2018 IPR025866 Polymerase A arginine-rich C-terminal domain VI35_03650 bf169f968649ef7bd518d656fa9cc30f 496 Gene3D G3DSA:3.30.460.10 47 207 4.1E-61 T 17-10-2018 VI35_03650 bf169f968649ef7bd518d656fa9cc30f 496 Hamap MF_00957 Poly(A) polymerase I [pcnB]. 37 491 37.989 T 17-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 VI35_03650 bf169f968649ef7bd518d656fa9cc30f 496 Pfam PF01743 Poly A polymerase head domain 80 210 9.8E-37 T 17-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 VI35_03650 bf169f968649ef7bd518d656fa9cc30f 496 TIGRFAM TIGR01942 pcnB: poly(A) polymerase 51 480 1.5E-159 T 17-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 VI35_03650 bf169f968649ef7bd518d656fa9cc30f 496 SUPERFAMILY SSF81891 210 445 1.7E-47 T 17-10-2018 VI35_03650 bf169f968649ef7bd518d656fa9cc30f 496 SUPERFAMILY SSF81301 52 208 1.63E-39 T 17-10-2018 VI35_03650 bf169f968649ef7bd518d656fa9cc30f 496 Gene3D G3DSA:1.10.3090.10 210 457 7.4E-93 T 17-10-2018 VI35_03650 bf169f968649ef7bd518d656fa9cc30f 496 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 238 299 3.2E-22 T 17-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 VI35_13000 ebb3c770a3d85ab2cc7946d5bedf99d2 471 Gene3D G3DSA:1.10.287.470 111 192 2.4E-11 T 17-10-2018 VI35_13000 ebb3c770a3d85ab2cc7946d5bedf99d2 471 Pfam PF13437 HlyD family secretion protein 323 429 1.9E-17 T 17-10-2018 VI35_13000 ebb3c770a3d85ab2cc7946d5bedf99d2 471 SUPERFAMILY SSF111369 70 162 1.24E-6 T 17-10-2018 VI35_13000 ebb3c770a3d85ab2cc7946d5bedf99d2 471 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 47 70 2.3E-50 T 17-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VI35_13000 ebb3c770a3d85ab2cc7946d5bedf99d2 471 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 335 356 2.3E-50 T 17-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VI35_13000 ebb3c770a3d85ab2cc7946d5bedf99d2 471 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 368 392 2.3E-50 T 17-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VI35_13000 ebb3c770a3d85ab2cc7946d5bedf99d2 471 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 435 450 2.3E-50 T 17-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VI35_13000 ebb3c770a3d85ab2cc7946d5bedf99d2 471 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 392 415 2.3E-50 T 17-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VI35_13000 ebb3c770a3d85ab2cc7946d5bedf99d2 471 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 89 109 2.3E-50 T 17-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VI35_13000 ebb3c770a3d85ab2cc7946d5bedf99d2 471 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 450 470 2.3E-50 T 17-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VI35_13000 ebb3c770a3d85ab2cc7946d5bedf99d2 471 Pfam PF13533 Biotin-lipoyl like 86 115 2.3E-7 T 17-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VI35_13000 ebb3c770a3d85ab2cc7946d5bedf99d2 471 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 38 471 7.2E-135 T 17-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 VI35_13000 ebb3c770a3d85ab2cc7946d5bedf99d2 471 Gene3D G3DSA:2.40.30.170 65 75 2.4E-11 T 17-10-2018 VI35_13000 ebb3c770a3d85ab2cc7946d5bedf99d2 471 Gene3D G3DSA:1.10.287.470 250 322 2.3E-12 T 17-10-2018 VI35_13000 ebb3c770a3d85ab2cc7946d5bedf99d2 471 Gene3D G3DSA:2.40.50.100 76 110 2.4E-11 T 17-10-2018 VI35_13000 ebb3c770a3d85ab2cc7946d5bedf99d2 471 Gene3D G3DSA:2.40.50.100 323 359 2.3E-12 T 17-10-2018 VI35_13000 ebb3c770a3d85ab2cc7946d5bedf99d2 471 Gene3D G3DSA:2.40.30.170 360 447 2.3E-12 T 17-10-2018 VI35_13000 ebb3c770a3d85ab2cc7946d5bedf99d2 471 ProSitePatterns PS00543 HlyD family secretion proteins signature. 435 457 - T 17-10-2018 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 VI35_06325 e104092cb67991de24d757d91d8eb2be 379 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 77 86 - T 17-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 VI35_06325 e104092cb67991de24d757d91d8eb2be 379 SUPERFAMILY SSF55031 182 289 3.4E-23 T 17-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain VI35_06325 e104092cb67991de24d757d91d8eb2be 379 PIRSF PIRSF037238 1 378 6.5E-134 T 17-10-2018 IPR017150 Peptidase M20, glutamate carboxypeptidase VI35_06325 e104092cb67991de24d757d91d8eb2be 379 Pfam PF07687 Peptidase dimerisation domain 180 277 1.8E-19 T 17-10-2018 IPR011650 Peptidase M20, dimerisation domain VI35_06325 e104092cb67991de24d757d91d8eb2be 379 SUPERFAMILY SSF53187 8 378 1.31E-42 T 17-10-2018 VI35_06325 e104092cb67991de24d757d91d8eb2be 379 Pfam PF01546 Peptidase family M20/M25/M40 78 374 4.4E-24 T 17-10-2018 IPR002933 Peptidase M20 GO:0016787 VI35_06325 e104092cb67991de24d757d91d8eb2be 379 Gene3D G3DSA:3.40.630.10 17 366 4.1E-107 T 17-10-2018 VI35_06325 e104092cb67991de24d757d91d8eb2be 379 Gene3D G3DSA:3.30.70.360 182 291 4.1E-107 T 17-10-2018 VI35_02250 3c4aad95aceec4ffd3f183ed33ce2185 355 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 6 142 9.5E-43 T 17-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VI35_02250 3c4aad95aceec4ffd3f183ed33ce2185 355 Gene3D G3DSA:3.40.50.2000 6 343 1.5E-115 T 17-10-2018 VI35_02250 3c4aad95aceec4ffd3f183ed33ce2185 355 SUPERFAMILY SSF53756 3 353 9.25E-122 T 17-10-2018 VI35_02250 3c4aad95aceec4ffd3f183ed33ce2185 355 Gene3D G3DSA:3.40.50.2000 162 337 1.5E-115 T 17-10-2018 VI35_02250 3c4aad95aceec4ffd3f183ed33ce2185 355 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 3 347 5.9E-109 T 17-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VI35_02250 3c4aad95aceec4ffd3f183ed33ce2185 355 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 183 344 9.1E-38 T 17-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 VI35_02250 3c4aad95aceec4ffd3f183ed33ce2185 355 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 5 353 36.925 T 17-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VI35_04990 65c7bf2efacabfc9e237e5961c4845aa 576 Gene3D G3DSA:3.90.1640.30 47 324 7.8E-86 T 17-10-2018 VI35_04990 65c7bf2efacabfc9e237e5961c4845aa 576 SUPERFAMILY SSF64182 46 464 3.4E-118 T 17-10-2018 IPR038763 DHH phosphoesterase superfamily VI35_04990 65c7bf2efacabfc9e237e5961c4845aa 576 Pfam PF02272 DHHA1 domain 321 451 1.9E-26 T 17-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 VI35_04990 65c7bf2efacabfc9e237e5961c4845aa 576 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 21 570 1.8E-153 T 17-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 VI35_04990 65c7bf2efacabfc9e237e5961c4845aa 576 Gene3D G3DSA:3.10.310.30 325 455 2.3E-31 T 17-10-2018 VI35_04990 65c7bf2efacabfc9e237e5961c4845aa 576 Pfam PF01368 DHH family 71 199 5.0E-9 T 17-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 VI35_19130 6dce45503c767320433a83b96a8397c9 336 Gene3D G3DSA:3.40.190.90 110 277 1.0E-129 T 17-10-2018 VI35_19130 6dce45503c767320433a83b96a8397c9 336 PIRSF PIRSF004532 1 332 1.0E-139 T 17-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 VI35_19130 6dce45503c767320433a83b96a8397c9 336 Gene3D G3DSA:3.30.540.10 7 320 1.0E-129 T 17-10-2018 VI35_19130 6dce45503c767320433a83b96a8397c9 336 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 3 322 3.8E-133 T 17-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 VI35_19130 6dce45503c767320433a83b96a8397c9 336 SUPERFAMILY SSF56655 2 325 1.22E-110 T 17-10-2018 VI35_19130 6dce45503c767320433a83b96a8397c9 336 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 1 329 4.3E-172 T 17-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 VI35_18550 89a300a4132f391b9d2e5a3064d2262e 259 Pfam PF00950 ABC 3 transport family 3 256 1.1E-75 T 17-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 VI35_18550 89a300a4132f391b9d2e5a3064d2262e 259 Gene3D G3DSA:1.10.3470.10 28 259 6.1E-10 T 17-10-2018 IPR037294 ABC transporter, BtuC-like VI35_18550 89a300a4132f391b9d2e5a3064d2262e 259 SUPERFAMILY SSF81345 3 257 1.57E-39 T 17-10-2018 IPR037294 ABC transporter, BtuC-like VI35_17230 6fd8e69abfac6bd766e383d95094de9a 331 PIRSF PIRSF000149 1 331 9.9E-136 T 17-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_17230 6fd8e69abfac6bd766e383d95094de9a 331 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 148 155 - T 17-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_17230 6fd8e69abfac6bd766e383d95094de9a 331 SUPERFAMILY SSF51735 3 166 1.25E-67 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_17230 6fd8e69abfac6bd766e383d95094de9a 331 Gene3D G3DSA:3.30.360.10 149 314 2.3E-157 T 17-10-2018 VI35_17230 6fd8e69abfac6bd766e383d95094de9a 331 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 324 6.0E-138 T 17-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_17230 6fd8e69abfac6bd766e383d95094de9a 331 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 155 312 6.3E-72 T 17-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_17230 6fd8e69abfac6bd766e383d95094de9a 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 109 122 1.2E-47 T 17-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_17230 6fd8e69abfac6bd766e383d95094de9a 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 144 162 1.2E-47 T 17-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_17230 6fd8e69abfac6bd766e383d95094de9a 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 171 187 1.2E-47 T 17-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_17230 6fd8e69abfac6bd766e383d95094de9a 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 268 283 1.2E-47 T 17-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_17230 6fd8e69abfac6bd766e383d95094de9a 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 228 245 1.2E-47 T 17-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_17230 6fd8e69abfac6bd766e383d95094de9a 331 SMART SM00846 3 150 5.3E-96 T 17-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_17230 6fd8e69abfac6bd766e383d95094de9a 331 SUPERFAMILY SSF55347 149 312 1.22E-78 T 17-10-2018 VI35_17230 6fd8e69abfac6bd766e383d95094de9a 331 Gene3D G3DSA:3.40.50.720 4 326 2.3E-157 T 17-10-2018 VI35_17230 6fd8e69abfac6bd766e383d95094de9a 331 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 102 3.1E-40 T 17-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_03030 640b0830c7ee30e652238ae93b3714c5 340 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 36 336 68.568 T 17-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 VI35_03030 640b0830c7ee30e652238ae93b3714c5 340 Gene3D G3DSA:3.40.50.1370 38 164 2.9E-102 T 17-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 VI35_03030 640b0830c7ee30e652238ae93b3714c5 340 SUPERFAMILY SSF53671 35 336 1.96E-89 T 17-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 VI35_03030 640b0830c7ee30e652238ae93b3714c5 340 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 80 99 1.1E-18 T 17-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 VI35_03030 640b0830c7ee30e652238ae93b3714c5 340 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 162 173 1.1E-18 T 17-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 VI35_03030 640b0830c7ee30e652238ae93b3714c5 340 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 300 323 1.1E-18 T 17-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 VI35_03030 640b0830c7ee30e652238ae93b3714c5 340 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 182 333 9.6E-47 T 17-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 VI35_03030 640b0830c7ee30e652238ae93b3714c5 340 Gene3D G3DSA:3.40.50.1370 165 331 2.9E-102 T 17-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 VI35_03030 640b0830c7ee30e652238ae93b3714c5 340 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 37 335 6.0E-100 T 17-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 VI35_03030 640b0830c7ee30e652238ae93b3714c5 340 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 37 175 1.5E-42 T 17-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 VI35_03030 640b0830c7ee30e652238ae93b3714c5 340 PRINTS PR00102 Ornithine carbamoyltransferase signature 151 165 6.7E-23 T 17-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 VI35_03030 640b0830c7ee30e652238ae93b3714c5 340 PRINTS PR00102 Ornithine carbamoyltransferase signature 111 124 6.7E-23 T 17-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 VI35_03030 640b0830c7ee30e652238ae93b3714c5 340 PRINTS PR00102 Ornithine carbamoyltransferase signature 78 92 6.7E-23 T 17-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 VI35_03030 640b0830c7ee30e652238ae93b3714c5 340 PRINTS PR00102 Ornithine carbamoyltransferase signature 253 263 6.7E-23 T 17-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 VI35_03030 640b0830c7ee30e652238ae93b3714c5 340 PRINTS PR00102 Ornithine carbamoyltransferase signature 314 325 6.7E-23 T 17-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 VI35_20360 29a445de7eec2a518fe929c82515374a 481 PIRSF PIRSF006060 1 476 4.8E-41 T 17-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VI35_20360 29a445de7eec2a518fe929c82515374a 481 Pfam PF13520 Amino acid permease 11 443 2.3E-32 T 17-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VI35_20360 29a445de7eec2a518fe929c82515374a 481 Gene3D G3DSA:1.20.1740.10 13 470 7.9E-8 T 17-10-2018 VI35_14090 d51f7806389c37391eba966e54717be6 367 Gene3D G3DSA:1.25.40.10 67 214 7.5E-10 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_14090 d51f7806389c37391eba966e54717be6 367 Pfam PF02698 DUF218 domain 196 311 5.9E-18 T 17-10-2018 IPR003848 Domain of unknown function DUF218 VI35_14090 d51f7806389c37391eba966e54717be6 367 SUPERFAMILY SSF48452 71 160 5.31E-9 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_19470 a2690d8c3f6d3d5c41216329c9fc723f 296 SUPERFAMILY SSF52540 5 266 1.36E-31 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_19470 a2690d8c3f6d3d5c41216329c9fc723f 296 Pfam PF13401 AAA domain 42 173 6.4E-23 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_19470 a2690d8c3f6d3d5c41216329c9fc723f 296 Gene3D G3DSA:3.40.50.300 28 187 2.6E-13 T 17-10-2018 VI35_12605 f149fde3e5c976ccec157c65767d68bd 638 SUPERFAMILY SSF55073 204 360 4.55E-31 T 17-10-2018 IPR029787 Nucleotide cyclase VI35_12605 f149fde3e5c976ccec157c65767d68bd 638 SUPERFAMILY SSF141868 379 626 9.55E-71 T 17-10-2018 IPR035919 EAL domain superfamily VI35_12605 f149fde3e5c976ccec157c65767d68bd 638 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 198 357 3.7E-25 T 17-10-2018 IPR000160 GGDEF domain VI35_12605 f149fde3e5c976ccec157c65767d68bd 638 SMART SM00052 369 617 1.7E-79 T 17-10-2018 IPR001633 EAL domain VI35_12605 f149fde3e5c976ccec157c65767d68bd 638 Pfam PF00563 EAL domain 388 612 5.6E-61 T 17-10-2018 IPR001633 EAL domain VI35_12605 f149fde3e5c976ccec157c65767d68bd 638 SMART SM00267 188 359 2.8E-36 T 17-10-2018 IPR000160 GGDEF domain VI35_12605 f149fde3e5c976ccec157c65767d68bd 638 Pfam PF00990 Diguanylate cyclase, GGDEF domain 200 354 1.5E-27 T 17-10-2018 IPR000160 GGDEF domain VI35_12605 f149fde3e5c976ccec157c65767d68bd 638 Gene3D G3DSA:3.30.70.270 194 372 2.8E-36 T 17-10-2018 VI35_12605 f149fde3e5c976ccec157c65767d68bd 638 Gene3D G3DSA:3.20.20.450 373 624 3.1E-74 T 17-10-2018 IPR035919 EAL domain superfamily VI35_13720 f6c0510e0575efa3af0c3dc185d33410 616 Gene3D G3DSA:3.40.190.10 33 325 2.3E-50 T 17-10-2018 VI35_13720 f6c0510e0575efa3af0c3dc185d33410 616 PIRSF PIRSF002741 30 571 1.4E-72 T 17-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 VI35_13720 f6c0510e0575efa3af0c3dc185d33410 616 SUPERFAMILY SSF53850 55 566 2.85E-92 T 17-10-2018 VI35_13720 f6c0510e0575efa3af0c3dc185d33410 616 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 105 479 8.3E-58 T 17-10-2018 IPR000914 Solute-binding protein family 5 domain VI35_13720 f6c0510e0575efa3af0c3dc185d33410 616 Gene3D G3DSA:3.10.105.10 326 541 4.3E-39 T 17-10-2018 VI35_21060 6873cd4e988c2e65af63a2736ff6f699 435 PIRSF PIRSF037714 13 435 2.5E-130 T 17-10-2018 IPR017270 Putative MotA/TolQ/ExbB family protein VI35_21060 6873cd4e988c2e65af63a2736ff6f699 435 Pfam PF01618 MotA/TolQ/ExbB proton channel family 299 413 6.4E-30 T 17-10-2018 IPR002898 MotA/TolQ/ExbB proton channel VI35_11750 de8bf8927a8fb69c938f51be7e24cbe7 425 TIGRFAM TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit 3 422 3.4E-165 T 17-10-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 VI35_11750 de8bf8927a8fb69c938f51be7e24cbe7 425 Gene3D G3DSA:3.50.50.60 1 87 6.3E-10 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_11750 de8bf8927a8fb69c938f51be7e24cbe7 425 SUPERFAMILY SSF51905 1 423 3.52E-28 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_11750 de8bf8927a8fb69c938f51be7e24cbe7 425 PIRSF PIRSF000141 1 425 8.1E-129 T 17-10-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 VI35_11750 de8bf8927a8fb69c938f51be7e24cbe7 425 Gene3D G3DSA:3.50.50.60 230 421 1.9E-6 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_11750 de8bf8927a8fb69c938f51be7e24cbe7 425 Pfam PF00890 FAD binding domain 4 409 1.7E-45 T 17-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_11750 de8bf8927a8fb69c938f51be7e24cbe7 425 PRINTS PR00757 Flavin-containing amine oxidase signature 4 23 5.9E-5 T 17-10-2018 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 VI35_11750 de8bf8927a8fb69c938f51be7e24cbe7 425 PRINTS PR00757 Flavin-containing amine oxidase signature 192 214 5.9E-5 T 17-10-2018 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 VI35_04915 7001195de1c285f09ad3a83d7357eacf 403 Gene3D G3DSA:1.20.1250.20 10 387 2.4E-44 T 17-10-2018 VI35_04915 7001195de1c285f09ad3a83d7357eacf 403 SUPERFAMILY SSF103473 12 392 3.53E-48 T 17-10-2018 IPR036259 MFS transporter superfamily VI35_04915 7001195de1c285f09ad3a83d7357eacf 403 ProSitePatterns PS00216 Sugar transport proteins signature 1. 67 83 - T 17-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 VI35_04915 7001195de1c285f09ad3a83d7357eacf 403 Pfam PF07690 Major Facilitator Superfamily 16 239 2.8E-19 T 17-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VI35_04915 7001195de1c285f09ad3a83d7357eacf 403 Pfam PF07690 Major Facilitator Superfamily 251 389 4.5E-15 T 17-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VI35_13105 4accb6aeebe21f98f18c3a01f48de78c 552 SMART SM00917 418 546 5.3E-24 T 17-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 VI35_13105 4accb6aeebe21f98f18c3a01f48de78c 552 SUPERFAMILY SSF89000 384 434 7.45E-14 T 17-10-2018 VI35_13105 4accb6aeebe21f98f18c3a01f48de78c 552 SUPERFAMILY SSF51569 19 326 9.16E-96 T 17-10-2018 VI35_13105 4accb6aeebe21f98f18c3a01f48de78c 552 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 239 252 - T 17-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 VI35_13105 4accb6aeebe21f98f18c3a01f48de78c 552 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 37 53 - T 17-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 VI35_13105 4accb6aeebe21f98f18c3a01f48de78c 552 Gene3D G3DSA:3.20.20.70 9 372 2.9E-150 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_13105 4accb6aeebe21f98f18c3a01f48de78c 552 Pfam PF08502 LeuA allosteric (dimerisation) domain 418 542 1.1E-22 T 17-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 VI35_13105 4accb6aeebe21f98f18c3a01f48de78c 552 SUPERFAMILY SSF110921 452 542 4.18E-20 T 17-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 VI35_13105 4accb6aeebe21f98f18c3a01f48de78c 552 TIGRFAM TIGR00970 leuA_yeast: 2-isopropylmalate synthase 6 542 1.2E-213 T 17-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 VI35_13105 4accb6aeebe21f98f18c3a01f48de78c 552 Hamap MF_00572 2-isopropylmalate synthase [leuA]. 2 547 50.518 T 17-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 VI35_13105 4accb6aeebe21f98f18c3a01f48de78c 552 Gene3D G3DSA:3.30.160.270 373 545 5.5E-45 T 17-10-2018 VI35_13105 4accb6aeebe21f98f18c3a01f48de78c 552 Pfam PF00682 HMGL-like 31 309 2.2E-74 T 17-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 VI35_11735 488850fbdfb5daa7fb2c4e6f40483d09 555 SMART SM01049 42 131 6.6E-28 T 17-10-2018 IPR033480 Single Cache domain 2 VI35_11735 488850fbdfb5daa7fb2c4e6f40483d09 555 SMART SM00283 293 554 6.4E-72 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_11735 488850fbdfb5daa7fb2c4e6f40483d09 555 SMART SM00304 224 278 3.0E-15 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_11735 488850fbdfb5daa7fb2c4e6f40483d09 555 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 420 449 2.0E-6 T 17-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VI35_11735 488850fbdfb5daa7fb2c4e6f40483d09 555 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 307 336 2.0E-6 T 17-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VI35_11735 488850fbdfb5daa7fb2c4e6f40483d09 555 SUPERFAMILY SSF58104 246 555 2.75E-77 T 17-10-2018 VI35_11735 488850fbdfb5daa7fb2c4e6f40483d09 555 Gene3D G3DSA:1.10.287.950 224 555 7.7E-74 T 17-10-2018 VI35_11735 488850fbdfb5daa7fb2c4e6f40483d09 555 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 366 521 6.0E-41 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_11735 488850fbdfb5daa7fb2c4e6f40483d09 555 Pfam PF00672 HAMP domain 225 274 3.5E-12 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_11735 488850fbdfb5daa7fb2c4e6f40483d09 555 Gene3D G3DSA:3.30.450.20 29 200 2.8E-42 T 17-10-2018 VI35_11735 488850fbdfb5daa7fb2c4e6f40483d09 555 Pfam PF17200 Single Cache domain 2 47 188 3.5E-32 T 17-10-2018 IPR033480 Single Cache domain 2 VI35_20305 189d7ec5654c8ef5a1da3eb042431a30 367 Gene3D G3DSA:3.40.50.2300 62 318 9.8E-95 T 17-10-2018 VI35_20305 189d7ec5654c8ef5a1da3eb042431a30 367 SUPERFAMILY SSF53822 79 302 4.42E-15 T 17-10-2018 IPR028082 Periplasmic binding protein-like I VI35_20305 189d7ec5654c8ef5a1da3eb042431a30 367 Gene3D G3DSA:3.40.50.2300 162 354 9.8E-95 T 17-10-2018 VI35_20305 189d7ec5654c8ef5a1da3eb042431a30 367 Pfam PF02608 ABC transporter substrate-binding protein PnrA-like 66 354 4.5E-61 T 17-10-2018 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 VI35_07325 2d5bda6ec06ee8b8cb002ff748fbd0da 230 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 10 116 4.2E-23 T 17-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 VI35_07325 2d5bda6ec06ee8b8cb002ff748fbd0da 230 Gene3D G3DSA:1.10.3720.10 1 224 7.4E-55 T 17-10-2018 IPR035906 MetI-like superfamily VI35_07325 2d5bda6ec06ee8b8cb002ff748fbd0da 230 SUPERFAMILY SSF161098 10 210 3.01E-43 T 17-10-2018 IPR035906 MetI-like superfamily VI35_07325 2d5bda6ec06ee8b8cb002ff748fbd0da 230 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 32 216 2.2E-20 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_07250 001629da65c2f442f50c5460d363e9cf 356 Pfam PF01594 AI-2E family transporter 20 345 7.3E-76 T 17-10-2018 IPR002549 Transmembrane protein TqsA-like VI35_16210 d012ccf50f47d2b2467cfe14e0a63fbd 512 Pfam PF07690 Major Facilitator Superfamily 23 414 7.3E-58 T 17-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VI35_16210 d012ccf50f47d2b2467cfe14e0a63fbd 512 SUPERFAMILY SSF103473 13 496 2.09E-72 T 17-10-2018 IPR036259 MFS transporter superfamily VI35_16210 d012ccf50f47d2b2467cfe14e0a63fbd 512 Gene3D G3DSA:1.20.1720.10 18 256 5.1E-57 T 17-10-2018 VI35_16210 d012ccf50f47d2b2467cfe14e0a63fbd 512 Gene3D G3DSA:1.20.1250.20 264 441 1.3E-16 T 17-10-2018 VI35_16210 d012ccf50f47d2b2467cfe14e0a63fbd 512 PRINTS PR01036 Tetracycline resistance protein TetB signature 112 132 1.3E-5 T 17-10-2018 VI35_16210 d012ccf50f47d2b2467cfe14e0a63fbd 512 PRINTS PR01036 Tetracycline resistance protein TetB signature 267 292 1.3E-5 T 17-10-2018 VI35_16210 d012ccf50f47d2b2467cfe14e0a63fbd 512 PRINTS PR01036 Tetracycline resistance protein TetB signature 21 45 1.3E-5 T 17-10-2018 VI35_16210 d012ccf50f47d2b2467cfe14e0a63fbd 512 PRINTS PR01036 Tetracycline resistance protein TetB signature 142 166 1.3E-5 T 17-10-2018 VI35_16210 d012ccf50f47d2b2467cfe14e0a63fbd 512 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 17 457 2.2E-131 T 17-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 VI35_07405 cd1b7b04dc9eac3588a95982b73d569c 314 PRINTS PR00207 Flagellin signature 37 54 8.1E-26 T 17-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VI35_07405 cd1b7b04dc9eac3588a95982b73d569c 314 PRINTS PR00207 Flagellin signature 76 95 8.1E-26 T 17-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VI35_07405 cd1b7b04dc9eac3588a95982b73d569c 314 PRINTS PR00207 Flagellin signature 111 134 8.1E-26 T 17-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VI35_07405 cd1b7b04dc9eac3588a95982b73d569c 314 Gene3D G3DSA:1.20.1330.10 44 170 7.7E-58 T 17-10-2018 VI35_07405 cd1b7b04dc9eac3588a95982b73d569c 314 SUPERFAMILY SSF64518 1 313 7.98E-97 T 17-10-2018 VI35_07405 cd1b7b04dc9eac3588a95982b73d569c 314 Gene3D G3DSA:1.10.8.410 261 313 2.1E-23 T 17-10-2018 VI35_07405 cd1b7b04dc9eac3588a95982b73d569c 314 Pfam PF00700 Bacterial flagellin C-terminal helical region 229 312 1.4E-25 T 17-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VI35_07405 cd1b7b04dc9eac3588a95982b73d569c 314 Gene3D G3DSA:3.30.70.2120 171 208 7.7E-58 T 17-10-2018 VI35_07405 cd1b7b04dc9eac3588a95982b73d569c 314 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 141 6.1E-43 T 17-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VI35_14925 d5077a4e444b58f3bc33d3f70f97b7ea 278 Pfam PF01842 ACT domain 5 66 8.9E-8 T 17-10-2018 IPR002912 ACT domain VI35_14925 d5077a4e444b58f3bc33d3f70f97b7ea 278 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 1 277 45.89 T 17-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 VI35_14925 d5077a4e444b58f3bc33d3f70f97b7ea 278 SUPERFAMILY SSF55021 4 65 8.33E-8 T 17-10-2018 VI35_14925 d5077a4e444b58f3bc33d3f70f97b7ea 278 PIRSF PIRSF036480 1 278 6.1E-114 T 17-10-2018 VI35_14925 d5077a4e444b58f3bc33d3f70f97b7ea 278 SUPERFAMILY SSF53328 82 278 3.92E-58 T 17-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 VI35_14925 d5077a4e444b58f3bc33d3f70f97b7ea 278 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 4 277 6.3E-124 T 17-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 VI35_14925 d5077a4e444b58f3bc33d3f70f97b7ea 278 Gene3D G3DSA:3.30.70.260 1 78 1.5E-15 T 17-10-2018 VI35_14925 d5077a4e444b58f3bc33d3f70f97b7ea 278 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 83 105 2.9E-65 T 17-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 VI35_14925 d5077a4e444b58f3bc33d3f70f97b7ea 278 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 251 276 2.9E-65 T 17-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 VI35_14925 d5077a4e444b58f3bc33d3f70f97b7ea 278 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 229 251 2.9E-65 T 17-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 VI35_14925 d5077a4e444b58f3bc33d3f70f97b7ea 278 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 38 50 2.9E-65 T 17-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 VI35_14925 d5077a4e444b58f3bc33d3f70f97b7ea 278 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 105 132 2.9E-65 T 17-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 VI35_14925 d5077a4e444b58f3bc33d3f70f97b7ea 278 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 6 32 2.9E-65 T 17-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 VI35_14925 d5077a4e444b58f3bc33d3f70f97b7ea 278 Gene3D G3DSA:3.40.50.170 81 278 2.9E-65 T 17-10-2018 VI35_14925 d5077a4e444b58f3bc33d3f70f97b7ea 278 Pfam PF00551 Formyl transferase 82 259 2.3E-46 T 17-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 VI35_10930 d16632cd28df97d5bbcaed880fea7f87 1613 SUPERFAMILY SSF53223 757 958 4.03E-22 T 17-10-2018 VI35_10930 d16632cd28df97d5bbcaed880fea7f87 1613 Pfam PF05088 Bacterial NAD-glutamate dehydrogenase 76 1603 0.0 T 17-10-2018 IPR028971 NAD-glutamate dehydrogenase GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 VI35_10930 d16632cd28df97d5bbcaed880fea7f87 1613 PIRSF PIRSF036761 1 1610 0.0 T 17-10-2018 IPR007780 NAD-glutamate dehydrogenase, bacteria GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 VI35_10930 d16632cd28df97d5bbcaed880fea7f87 1613 SUPERFAMILY SSF51735 947 1283 2.36E-28 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_01900 3736b965a851fdfe2cbaedc22518b23f 375 Gene3D G3DSA:2.40.10.10 41 144 1.4E-29 T 17-10-2018 VI35_01900 3736b965a851fdfe2cbaedc22518b23f 375 SMART SM00228 264 346 7.5E-12 T 17-10-2018 IPR001478 PDZ domain GO:0005515 VI35_01900 3736b965a851fdfe2cbaedc22518b23f 375 SUPERFAMILY SSF50494 22 273 7.4E-59 T 17-10-2018 IPR009003 Peptidase S1, PA clan VI35_01900 3736b965a851fdfe2cbaedc22518b23f 375 SUPERFAMILY SSF50156 247 353 3.02E-23 T 17-10-2018 IPR036034 PDZ superfamily GO:0005515 VI35_01900 3736b965a851fdfe2cbaedc22518b23f 375 TIGRFAM TIGR02038 protease_degS: periplasmic serine peptidase DegS 8 358 1.4E-144 T 17-10-2018 IPR011783 Peptidase S1C, DegS GO:0004252|GO:0006508 VI35_01900 3736b965a851fdfe2cbaedc22518b23f 375 PRINTS PR00834 HtrA/DegQ protease family signature 114 134 2.6E-48 T 17-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VI35_01900 3736b965a851fdfe2cbaedc22518b23f 375 PRINTS PR00834 HtrA/DegQ protease family signature 304 316 2.6E-48 T 17-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VI35_01900 3736b965a851fdfe2cbaedc22518b23f 375 PRINTS PR00834 HtrA/DegQ protease family signature 154 178 2.6E-48 T 17-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VI35_01900 3736b965a851fdfe2cbaedc22518b23f 375 PRINTS PR00834 HtrA/DegQ protease family signature 194 211 2.6E-48 T 17-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VI35_01900 3736b965a851fdfe2cbaedc22518b23f 375 PRINTS PR00834 HtrA/DegQ protease family signature 93 105 2.6E-48 T 17-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VI35_01900 3736b965a851fdfe2cbaedc22518b23f 375 PRINTS PR00834 HtrA/DegQ protease family signature 216 233 2.6E-48 T 17-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VI35_01900 3736b965a851fdfe2cbaedc22518b23f 375 Pfam PF13180 PDZ domain 264 353 2.6E-15 T 17-10-2018 IPR001478 PDZ domain GO:0005515 VI35_01900 3736b965a851fdfe2cbaedc22518b23f 375 Gene3D G3DSA:2.40.10.10 148 263 1.1E-35 T 17-10-2018 VI35_01900 3736b965a851fdfe2cbaedc22518b23f 375 Gene3D G3DSA:2.30.42.10 264 363 5.9E-24 T 17-10-2018 VI35_01900 3736b965a851fdfe2cbaedc22518b23f 375 Pfam PF13365 Trypsin-like peptidase domain 84 223 1.5E-29 T 17-10-2018 VI35_03245 e02e45887541fdb49a10432a7e0b3c35 301 PIRSF PIRSF006487 8 134 9.5E-8 T 17-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 VI35_03245 e02e45887541fdb49a10432a7e0b3c35 301 PIRSF PIRSF006487 167 250 120.0 T 17-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 VI35_03245 e02e45887541fdb49a10432a7e0b3c35 301 Gene3D G3DSA:2.40.30.160 172 291 6.0E-38 T 17-10-2018 VI35_03245 e02e45887541fdb49a10432a7e0b3c35 301 SUPERFAMILY SSF101790 219 299 2.29E-20 T 17-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal VI35_03245 e02e45887541fdb49a10432a7e0b3c35 301 Pfam PF01571 Aminomethyltransferase folate-binding domain 12 115 5.0E-8 T 17-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain VI35_03245 e02e45887541fdb49a10432a7e0b3c35 301 Gene3D G3DSA:3.30.70.1400 19 102 1.6E-20 T 17-10-2018 VI35_03245 e02e45887541fdb49a10432a7e0b3c35 301 SUPERFAMILY SSF103025 10 217 2.51E-51 T 17-10-2018 VI35_03245 e02e45887541fdb49a10432a7e0b3c35 301 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 164 227 1.3E-24 T 17-10-2018 IPR017703 YgfZ/GcvT conserved site VI35_11650 c09fbf9e3f6a0e2b1ff5a090f75892d3 506 Pfam PF04293 SpoVR like protein 16 446 6.5E-173 T 17-10-2018 IPR007390 Sporulation stage V, protein R VI35_12295 d1ce45a316a539de41ed07832ca632a4 306 Pfam PF13413 Helix-turn-helix domain 22 81 1.1E-19 T 17-10-2018 VI35_12295 d1ce45a316a539de41ed07832ca632a4 306 Pfam PF13464 Domain of unknown function (DUF4115) 230 303 2.5E-22 T 17-10-2018 IPR025194 Domain of unknown function DUF4115 VI35_12295 d1ce45a316a539de41ed07832ca632a4 306 SMART SM00530 21 82 0.0016 T 17-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VI35_12295 d1ce45a316a539de41ed07832ca632a4 306 SUPERFAMILY SSF47413 19 84 2.56E-6 T 17-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VI35_12295 d1ce45a316a539de41ed07832ca632a4 306 Gene3D G3DSA:1.10.260.40 8 116 1.8E-23 T 17-10-2018 VI35_19025 3090af63d985b77e073436c382a595fb 391 Pfam PF00994 Probable molybdopterin binding domain 4 173 4.4E-34 T 17-10-2018 IPR001453 MoaB/Mog domain VI35_19025 3090af63d985b77e073436c382a595fb 391 SUPERFAMILY SSF53218 1 205 8.11E-40 T 17-10-2018 IPR036425 MoaB/Mog-like domain superfamily VI35_19025 3090af63d985b77e073436c382a595fb 391 SMART SM00852 4 175 3.0E-38 T 17-10-2018 IPR001453 MoaB/Mog domain VI35_19025 3090af63d985b77e073436c382a595fb 391 Gene3D G3DSA:3.40.980.10 1 175 1.2E-50 T 17-10-2018 IPR036425 MoaB/Mog-like domain superfamily VI35_19025 3090af63d985b77e073436c382a595fb 391 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 1 166 2.6E-28 T 17-10-2018 IPR001453 MoaB/Mog domain VI35_19025 3090af63d985b77e073436c382a595fb 391 TIGRFAM TIGR00200 cinA_nterm: competence/damage-inducible protein CinA N-terminal domain 1 283 4.0E-73 T 17-10-2018 IPR008135 Competence-induced protein CinA VI35_10295 21e2bcf07362e993bf2b4f0b23f5bfc1 107 Gene3D G3DSA:3.10.450.140 4 103 2.8E-34 T 17-10-2018 IPR036763 Putative dsDNA mimic superfamily VI35_10295 21e2bcf07362e993bf2b4f0b23f5bfc1 107 Pfam PF04269 Protein of unknown function, DUF440 4 103 2.5E-36 T 17-10-2018 IPR007376 dsDNA mimic, putative VI35_10295 21e2bcf07362e993bf2b4f0b23f5bfc1 107 ProDom PD020447 UPF0263 YCIU HD0986 VV1228 UNCHARACTERIZED 3D-STRUCTURE VV13059 BCR PM0536 VC1208 3 103 4.0E-15 T 17-10-2018 IPR007376 dsDNA mimic, putative VI35_10295 21e2bcf07362e993bf2b4f0b23f5bfc1 107 SUPERFAMILY SSF102816 3 102 1.96E-23 T 17-10-2018 IPR036763 Putative dsDNA mimic superfamily VI35_11960 8ff930b9060ddeb3abc1602743995f23 252 Gene3D G3DSA:3.40.50.10490 81 247 3.1E-30 T 17-10-2018 VI35_11960 8ff930b9060ddeb3abc1602743995f23 252 Gene3D G3DSA:1.10.10.10 3 72 3.2E-20 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_11960 8ff930b9060ddeb3abc1602743995f23 252 Pfam PF01418 Helix-turn-helix domain, rpiR family 6 69 1.6E-16 T 17-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 VI35_11960 8ff930b9060ddeb3abc1602743995f23 252 SUPERFAMILY SSF53697 93 230 3.27E-29 T 17-10-2018 VI35_11960 8ff930b9060ddeb3abc1602743995f23 252 Pfam PF01380 SIS domain 108 211 2.8E-13 T 17-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 VI35_11960 8ff930b9060ddeb3abc1602743995f23 252 SUPERFAMILY SSF46689 5 70 1.11E-19 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_03385 b5f0ad090ead2ab4032010796eff859e 191 Pfam PF09335 SNARE associated Golgi protein 35 156 3.8E-13 T 17-10-2018 IPR032816 SNARE associated Golgi protein VI35_13600 8e22c07d23823370d3d7e8bd187e1604 447 Pfam PF00571 CBS domain 194 246 2.0E-4 T 17-10-2018 IPR000644 CBS domain VI35_13600 8e22c07d23823370d3d7e8bd187e1604 447 SUPERFAMILY SSF54631 130 267 2.36E-22 T 17-10-2018 VI35_13600 8e22c07d23823370d3d7e8bd187e1604 447 Pfam PF03448 MgtE intracellular N domain 28 126 6.7E-6 T 17-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain VI35_13600 8e22c07d23823370d3d7e8bd187e1604 447 Pfam PF01769 Divalent cation transporter 315 436 1.6E-26 T 17-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 VI35_13600 8e22c07d23823370d3d7e8bd187e1604 447 TIGRFAM TIGR00400 mgtE: magnesium transporter 29 443 7.9E-80 T 17-10-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 VI35_13600 8e22c07d23823370d3d7e8bd187e1604 447 SUPERFAMILY SSF161093 273 443 1.7E-47 T 17-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 VI35_13600 8e22c07d23823370d3d7e8bd187e1604 447 Gene3D G3DSA:1.10.357.20 267 443 1.8E-52 T 17-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain VI35_13600 8e22c07d23823370d3d7e8bd187e1604 447 SMART SM00924 27 130 4.8E-8 T 17-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain VI35_13600 8e22c07d23823370d3d7e8bd187e1604 447 SUPERFAMILY SSF158791 25 124 4.71E-10 T 17-10-2018 VI35_13600 8e22c07d23823370d3d7e8bd187e1604 447 Gene3D G3DSA:3.10.580.10 127 252 1.8E-28 T 17-10-2018 VI35_13600 8e22c07d23823370d3d7e8bd187e1604 447 SMART SM00116 201 248 7.3E-4 T 17-10-2018 IPR000644 CBS domain VI35_01435 fae764867a6843865106d79b516bfe87 297 Gene3D G3DSA:3.40.190.10 105 280 2.8E-33 T 17-10-2018 VI35_01435 fae764867a6843865106d79b516bfe87 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 68 2.7E-23 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_01435 fae764867a6843865106d79b516bfe87 297 Gene3D G3DSA:3.40.190.10 164 254 2.8E-33 T 17-10-2018 VI35_01435 fae764867a6843865106d79b516bfe87 297 SUPERFAMILY SSF46785 7 115 4.33E-24 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_01435 fae764867a6843865106d79b516bfe87 297 SUPERFAMILY SSF53850 96 287 1.68E-25 T 17-10-2018 VI35_01435 fae764867a6843865106d79b516bfe87 297 Gene3D G3DSA:1.10.10.10 8 97 5.7E-26 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_01435 fae764867a6843865106d79b516bfe87 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 7.3E-10 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_01435 fae764867a6843865106d79b516bfe87 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 7.3E-10 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_01435 fae764867a6843865106d79b516bfe87 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 7.3E-10 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_01435 fae764867a6843865106d79b516bfe87 297 Pfam PF03466 LysR substrate binding domain 96 284 7.8E-24 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_07365 4a98a65ff08e4ec06c2f20883a4e011a 505 Pfam PF02321 Outer membrane efflux protein 280 460 4.5E-22 T 17-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VI35_07365 4a98a65ff08e4ec06c2f20883a4e011a 505 Pfam PF02321 Outer membrane efflux protein 68 253 3.2E-26 T 17-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VI35_07365 4a98a65ff08e4ec06c2f20883a4e011a 505 Gene3D G3DSA:1.20.1600.10 58 463 1.6E-123 T 17-10-2018 VI35_07365 4a98a65ff08e4ec06c2f20883a4e011a 505 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 17 462 3.3E-93 T 17-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 VI35_07365 4a98a65ff08e4ec06c2f20883a4e011a 505 SUPERFAMILY SSF56954 8 464 1.83E-100 T 17-10-2018 VI35_07365 4a98a65ff08e4ec06c2f20883a4e011a 505 Gene3D G3DSA:2.20.200.10 105 351 1.6E-123 T 17-10-2018 VI35_01835 528f3949a9afaff22c05eadf4ce1f179 95 Gene3D G3DSA:3.30.160.100 1 95 2.7E-37 T 17-10-2018 IPR036567 Ribosome hibernation promotion factor-like VI35_01835 528f3949a9afaff22c05eadf4ce1f179 95 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 93 2.0E-28 T 17-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 VI35_01835 528f3949a9afaff22c05eadf4ce1f179 95 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 95 4.1E-34 T 17-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 VI35_01835 528f3949a9afaff22c05eadf4ce1f179 95 SUPERFAMILY SSF69754 1 95 1.96E-35 T 17-10-2018 IPR036567 Ribosome hibernation promotion factor-like VI35_01720 14640ad52ace25ec789fdeae1813c6fa 190 SUPERFAMILY SSF51182 51 185 4.21E-24 T 17-10-2018 IPR011051 RmlC-like cupin domain superfamily VI35_01720 14640ad52ace25ec789fdeae1813c6fa 190 SUPERFAMILY SSF47413 3 70 4.29E-17 T 17-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VI35_01720 14640ad52ace25ec789fdeae1813c6fa 190 Pfam PF01381 Helix-turn-helix 12 64 7.4E-14 T 17-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VI35_01720 14640ad52ace25ec789fdeae1813c6fa 190 Gene3D G3DSA:2.60.120.10 93 189 3.6E-29 T 17-10-2018 IPR014710 RmlC-like jelly roll fold VI35_01720 14640ad52ace25ec789fdeae1813c6fa 190 Gene3D G3DSA:1.10.260.40 1 79 6.7E-19 T 17-10-2018 VI35_01720 14640ad52ace25ec789fdeae1813c6fa 190 Pfam PF07883 Cupin domain 113 178 1.5E-9 T 17-10-2018 IPR013096 Cupin 2, conserved barrel VI35_01720 14640ad52ace25ec789fdeae1813c6fa 190 SMART SM00530 11 66 2.7E-13 T 17-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VI35_12545 268bdc44790c0c02072fa889988c31a5 90 SUPERFAMILY SSF47413 17 85 1.35E-24 T 17-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VI35_12545 268bdc44790c0c02072fa889988c31a5 90 Gene3D G3DSA:1.10.260.40 14 86 4.3E-31 T 17-10-2018 VI35_12545 268bdc44790c0c02072fa889988c31a5 90 Pfam PF13693 Winged helix-turn-helix DNA-binding 20 85 2.3E-29 T 17-10-2018 IPR038722 Ner, winged helix-turn-helix DNA-binding domain VI35_09405 f1afb7c933726f0241c5e5116f6907b4 450 Pfam PF03606 C4-dicarboxylate anaerobic carrier 3 448 4.2E-119 T 17-10-2018 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 VI35_09405 f1afb7c933726f0241c5e5116f6907b4 450 TIGRFAM TIGR00771 DcuC: transporter, anaerobic C4-dicarboxylate uptake C (DcuC) family 55 438 9.4E-153 T 17-10-2018 IPR004669 C4-dicarboxylate anaerobic carrier GO:0015556|GO:0015740|GO:0016021 VI35_18755 af4306bb6b3cafe76e6dcd6f6b5913af 206 Pfam PF01810 LysE type translocator 14 200 5.0E-42 T 17-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VI35_18755 af4306bb6b3cafe76e6dcd6f6b5913af 206 TIGRFAM TIGR00948 2a75: L-lysine exporter 15 191 3.7E-75 T 17-10-2018 IPR004777 L-lysine exporter/arginine exporter GO:0016021 VI35_18965 53d06c97c0e219da4626b37ac758595e 248 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 134 162 - T 17-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 VI35_18965 53d06c97c0e219da4626b37ac758595e 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 2.4E-23 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_18965 53d06c97c0e219da4626b37ac758595e 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 202 222 2.4E-23 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_18965 53d06c97c0e219da4626b37ac758595e 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 2.4E-23 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_18965 53d06c97c0e219da4626b37ac758595e 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 2.4E-23 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_18965 53d06c97c0e219da4626b37ac758595e 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 2.4E-23 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_18965 53d06c97c0e219da4626b37ac758595e 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 2.4E-23 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_18965 53d06c97c0e219da4626b37ac758595e 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 1.5E-9 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_18965 53d06c97c0e219da4626b37ac758595e 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 1.5E-9 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_18965 53d06c97c0e219da4626b37ac758595e 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 1.5E-9 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_18965 53d06c97c0e219da4626b37ac758595e 248 Pfam PF00106 short chain dehydrogenase 2 186 9.4E-52 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_18965 53d06c97c0e219da4626b37ac758595e 248 SUPERFAMILY SSF51735 2 231 5.96E-60 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_18965 53d06c97c0e219da4626b37ac758595e 248 Gene3D G3DSA:3.40.50.720 1 235 4.9E-65 T 17-10-2018 VI35_19095 738e9300c94d834760132cbc8fadfaa0 223 SUPERFAMILY SSF53474 6 215 1.36E-44 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_19095 738e9300c94d834760132cbc8fadfaa0 223 Gene3D G3DSA:3.40.50.1820 2 214 6.7E-58 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_19095 738e9300c94d834760132cbc8fadfaa0 223 Pfam PF02230 Phospholipase/Carboxylesterase 9 211 8.1E-41 T 17-10-2018 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 VI35_02625 fc7f4b6c59cddea041c1a887a2d08ed7 322 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 314 7.6E-15 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_02625 fc7f4b6c59cddea041c1a887a2d08ed7 322 SUPERFAMILY SSF161098 37 316 5.49E-45 T 17-10-2018 IPR035906 MetI-like superfamily VI35_02625 fc7f4b6c59cddea041c1a887a2d08ed7 322 Gene3D G3DSA:1.10.3720.10 35 318 5.4E-43 T 17-10-2018 IPR035906 MetI-like superfamily VI35_20085 6e74fc03d4e84f27a081ab1a3cb7edbd 146 Pfam PF10675 Protein of unknown function (DUF2489) 12 139 3.4E-46 T 17-10-2018 IPR019617 Domain of unknown function DUF2489 VI35_19705 4a3aa618150fbdce063bfaaa49305ce6 618 SUPERFAMILY SSF51735 409 532 9.84E-30 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_19705 4a3aa618150fbdce063bfaaa49305ce6 618 Pfam PF00999 Sodium/hydrogen exchanger family 10 377 2.1E-65 T 17-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 VI35_19705 4a3aa618150fbdce063bfaaa49305ce6 618 Pfam PF02254 TrkA-N domain 410 522 4.0E-23 T 17-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 VI35_19705 4a3aa618150fbdce063bfaaa49305ce6 618 Gene3D G3DSA:3.40.50.720 407 568 5.0E-34 T 17-10-2018 VI35_19705 4a3aa618150fbdce063bfaaa49305ce6 618 Gene3D G3DSA:1.20.1530.20 2 384 4.6E-87 T 17-10-2018 IPR038770 Sodium/solute symporter superfamily VI35_19705 4a3aa618150fbdce063bfaaa49305ce6 618 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 14 288 1.5E-81 T 17-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 VI35_11100 298842c39e9e263d985549c51c570da5 795 Gene3D G3DSA:3.30.56.10 7 179 7.3E-70 T 17-10-2018 VI35_11100 298842c39e9e263d985549c51c570da5 795 SMART SM00874 403 471 6.4E-32 T 17-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 VI35_11100 298842c39e9e263d985549c51c570da5 795 SUPERFAMILY SSF54991 697 794 1.26E-29 T 17-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 VI35_11100 298842c39e9e263d985549c51c570da5 795 SMART SM00873 212 385 1.3E-93 T 17-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 VI35_11100 298842c39e9e263d985549c51c570da5 795 Gene3D G3DSA:3.30.56.10 401 475 6.1E-27 T 17-10-2018 VI35_11100 298842c39e9e263d985549c51c570da5 795 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 788 46.769 T 17-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 VI35_11100 298842c39e9e263d985549c51c570da5 795 Pfam PF03483 B3/4 domain 213 385 3.3E-69 T 17-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 VI35_11100 298842c39e9e263d985549c51c570da5 795 SUPERFAMILY SSF50249 35 194 2.33E-48 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_11100 298842c39e9e263d985549c51c570da5 795 Pfam PF03484 tRNA synthetase B5 domain 406 471 1.6E-20 T 17-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 VI35_11100 298842c39e9e263d985549c51c570da5 795 Gene3D G3DSA:3.30.70.380 702 795 7.8E-30 T 17-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 VI35_11100 298842c39e9e263d985549c51c570da5 795 Gene3D G3DSA:2.40.50.140 39 154 7.3E-70 T 17-10-2018 VI35_11100 298842c39e9e263d985549c51c570da5 795 SUPERFAMILY SSF56037 196 396 6.28E-75 T 17-10-2018 VI35_11100 298842c39e9e263d985549c51c570da5 795 SUPERFAMILY SSF55681 467 690 1.54E-55 T 17-10-2018 VI35_11100 298842c39e9e263d985549c51c570da5 795 SUPERFAMILY SSF46955 404 475 2.29E-21 T 17-10-2018 IPR009061 Putative DNA-binding domain superfamily VI35_11100 298842c39e9e263d985549c51c570da5 795 Pfam PF01588 Putative tRNA binding domain 45 145 5.5E-26 T 17-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 VI35_11100 298842c39e9e263d985549c51c570da5 795 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 794 7.8E-277 T 17-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 VI35_11100 298842c39e9e263d985549c51c570da5 795 Gene3D G3DSA:3.30.930.10 486 690 3.6E-64 T 17-10-2018 VI35_11100 298842c39e9e263d985549c51c570da5 795 Gene3D G3DSA:3.50.40.10 197 395 1.6E-78 T 17-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 VI35_11100 298842c39e9e263d985549c51c570da5 795 Pfam PF03147 Ferredoxin-fold anticodon binding domain 701 794 6.4E-28 T 17-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 VI35_11100 298842c39e9e263d985549c51c570da5 795 SMART SM00896 701 794 3.1E-44 T 17-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 VI35_13820 75bbb5ed823da7086c3478c50df2e2fe 240 SUPERFAMILY SSF53448 1 213 4.98E-50 T 17-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VI35_13820 75bbb5ed823da7086c3478c50df2e2fe 240 Pfam PF00535 Glycosyl transferase family 2 1 126 1.0E-30 T 17-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 VI35_13820 75bbb5ed823da7086c3478c50df2e2fe 240 Gene3D G3DSA:3.90.550.10 1 224 6.9E-51 T 17-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VI35_01305 55d9376e4a09add488993ca6d77cd21a 166 Pfam PF00466 Ribosomal protein L10 6 101 2.7E-27 T 17-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 VI35_01305 55d9376e4a09add488993ca6d77cd21a 166 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 162 27.161 T 17-10-2018 IPR022973 Ribosomal protein L10 VI35_01305 55d9376e4a09add488993ca6d77cd21a 166 Gene3D G3DSA:3.30.70.1730 1 126 3.6E-37 T 17-10-2018 VI35_01305 55d9376e4a09add488993ca6d77cd21a 166 ProSitePatterns PS01109 Ribosomal protein L10 signature. 8 42 - T 17-10-2018 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_01305 55d9376e4a09add488993ca6d77cd21a 166 SUPERFAMILY SSF160369 5 161 2.22E-49 T 17-10-2018 VI35_14460 87fe60eabc83f557cabc3a299eff0670 368 SUPERFAMILY SSF52402 8 245 2.07E-55 T 17-10-2018 VI35_14460 87fe60eabc83f557cabc3a299eff0670 368 Pfam PF03054 tRNA methyl transferase 8 360 7.2E-141 T 17-10-2018 VI35_14460 87fe60eabc83f557cabc3a299eff0670 368 Gene3D G3DSA:2.40.30.10 282 367 3.0E-32 T 17-10-2018 VI35_14460 87fe60eabc83f557cabc3a299eff0670 368 Gene3D G3DSA:3.40.50.620 1 213 2.4E-96 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_14460 87fe60eabc83f557cabc3a299eff0670 368 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 8 360 1.0E-154 T 17-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 VI35_14460 87fe60eabc83f557cabc3a299eff0670 368 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 7 361 40.469 T 17-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 VI35_14460 87fe60eabc83f557cabc3a299eff0670 368 Gene3D G3DSA:2.30.30.280 214 281 2.4E-26 T 17-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 VI35_02360 c5dba8c9db609b8ddc94e1a30d811000 886 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 5 885 0.0 T 17-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 VI35_02360 c5dba8c9db609b8ddc94e1a30d811000 886 PIRSF PIRSF000156 1 886 0.0 T 17-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 VI35_02360 c5dba8c9db609b8ddc94e1a30d811000 886 SUPERFAMILY SSF52518 58 466 8.74E-142 T 17-10-2018 IPR029061 Thiamin diphosphate-binding fold VI35_02360 c5dba8c9db609b8ddc94e1a30d811000 886 SUPERFAMILY SSF52922 701 885 9.2E-59 T 17-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 VI35_02360 c5dba8c9db609b8ddc94e1a30d811000 886 SUPERFAMILY SSF52518 473 700 5.53E-99 T 17-10-2018 IPR029061 Thiamin diphosphate-binding fold VI35_02360 c5dba8c9db609b8ddc94e1a30d811000 886 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 105 296 1.3E-6 T 17-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VI35_02360 c5dba8c9db609b8ddc94e1a30d811000 886 Gene3D G3DSA:3.40.50.920 706 886 4.9E-70 T 17-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 VI35_02360 c5dba8c9db609b8ddc94e1a30d811000 886 Gene3D G3DSA:3.40.50.970 471 705 1.8E-109 T 17-10-2018 VI35_02360 c5dba8c9db609b8ddc94e1a30d811000 886 Gene3D G3DSA:3.40.50.970 56 470 2.4E-133 T 17-10-2018 VI35_06585 373df73040b5df10ccec8f053ba22393 549 SUPERFAMILY SSF55957 434 544 6.67E-20 T 17-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VI35_06585 373df73040b5df10ccec8f053ba22393 549 Gene3D G3DSA:3.30.310.50 444 547 3.9E-33 T 17-10-2018 VI35_06585 373df73040b5df10ccec8f053ba22393 549 SUPERFAMILY SSF53738 26 236 6.08E-49 T 17-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VI35_06585 373df73040b5df10ccec8f053ba22393 549 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 211 318 1.1E-17 T 17-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VI35_06585 373df73040b5df10ccec8f053ba22393 549 SUPERFAMILY SSF53738 210 318 2.0E-9 T 17-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VI35_06585 373df73040b5df10ccec8f053ba22393 549 SUPERFAMILY SSF53738 306 448 2.43E-31 T 17-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VI35_06585 373df73040b5df10ccec8f053ba22393 549 TIGRFAM TIGR01132 pgm: phosphoglucomutase, alpha-D-glucose phosphate-specific 1 544 7.9E-284 T 17-10-2018 IPR005852 Phosphoglucomutase, alpha-D-glucose specific GO:0004614|GO:0005975 KEGG: 00010+5.4.2.2|KEGG: 00030+5.4.2.2|KEGG: 00052+5.4.2.2|KEGG: 00230+5.4.2.2|KEGG: 00500+5.4.2.2|KEGG: 00520+5.4.2.2|KEGG: 00521+5.4.2.2|MetaCyc: PWY-2723|MetaCyc: PWY-3801|MetaCyc: PWY-5384|MetaCyc: PWY-5661|MetaCyc: PWY-5940|MetaCyc: PWY-5941|MetaCyc: PWY-622|MetaCyc: PWY-6317|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-6981|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7900|MetaCyc: PWY-7902 VI35_06585 373df73040b5df10ccec8f053ba22393 549 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 491 537 1.2E-7 T 17-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VI35_06585 373df73040b5df10ccec8f053ba22393 549 Gene3D G3DSA:3.40.120.10 222 319 5.9E-46 T 17-10-2018 VI35_06585 373df73040b5df10ccec8f053ba22393 549 Gene3D G3DSA:3.40.120.10 17 221 8.3E-73 T 17-10-2018 VI35_06585 373df73040b5df10ccec8f053ba22393 549 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 40 182 9.5E-37 T 17-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VI35_06585 373df73040b5df10ccec8f053ba22393 549 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 141 150 - T 17-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VI35_06585 373df73040b5df10ccec8f053ba22393 549 Gene3D G3DSA:3.40.120.10 320 443 1.4E-34 T 17-10-2018 VI35_06585 373df73040b5df10ccec8f053ba22393 549 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 321 438 6.2E-28 T 17-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VI35_19665 286e2bc419c46f32250e5f3c4b23b485 854 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 30 724 2.0E-209 T 17-10-2018 IPR011853 TRAP C4-dicarboxylate transport system permease, fused DctM-DctQ VI35_19665 286e2bc419c46f32250e5f3c4b23b485 854 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 137 668 3.4E-78 T 17-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit VI35_19665 286e2bc419c46f32250e5f3c4b23b485 854 Pfam PF11874 Domain of unknown function (DUF3394) 673 851 8.2E-70 T 17-10-2018 IPR021814 Protein of unknown function DUF3394 VI35_10120 3256f664b9896dc9d8097b8f1dad5331 305 Pfam PF03466 LysR substrate binding domain 88 283 4.7E-29 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_10120 3256f664b9896dc9d8097b8f1dad5331 305 Gene3D G3DSA:3.40.190.10 160 260 3.6E-35 T 17-10-2018 VI35_10120 3256f664b9896dc9d8097b8f1dad5331 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.5E-8 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_10120 3256f664b9896dc9d8097b8f1dad5331 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.5E-8 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_10120 3256f664b9896dc9d8097b8f1dad5331 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.5E-8 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_10120 3256f664b9896dc9d8097b8f1dad5331 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 2.5E-16 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_10120 3256f664b9896dc9d8097b8f1dad5331 305 SUPERFAMILY SSF53850 89 288 4.74E-29 T 17-10-2018 VI35_10120 3256f664b9896dc9d8097b8f1dad5331 305 Gene3D G3DSA:3.40.190.10 88 277 3.6E-35 T 17-10-2018 VI35_10120 3256f664b9896dc9d8097b8f1dad5331 305 Gene3D G3DSA:1.10.10.10 1 84 1.3E-23 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_10120 3256f664b9896dc9d8097b8f1dad5331 305 SUPERFAMILY SSF46785 1 84 7.94E-18 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_10530 26dd1005217c0dbd41b98ff6791c8e9a 369 Gene3D G3DSA:1.10.3210.10 147 364 3.5E-77 T 17-10-2018 VI35_10530 26dd1005217c0dbd41b98ff6791c8e9a 369 SMART SM00471 169 320 4.0E-9 T 17-10-2018 IPR003607 HD/PDEase domain VI35_10530 26dd1005217c0dbd41b98ff6791c8e9a 369 SUPERFAMILY SSF109604 154 350 1.26E-33 T 17-10-2018 VI35_10530 26dd1005217c0dbd41b98ff6791c8e9a 369 Gene3D G3DSA:3.40.50.2300 3 141 2.4E-38 T 17-10-2018 VI35_10530 26dd1005217c0dbd41b98ff6791c8e9a 369 Pfam PF00072 Response regulator receiver domain 9 120 5.5E-26 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_10530 26dd1005217c0dbd41b98ff6791c8e9a 369 SMART SM00448 7 120 3.3E-38 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_10530 26dd1005217c0dbd41b98ff6791c8e9a 369 SUPERFAMILY SSF52172 5 153 5.55E-40 T 17-10-2018 IPR011006 CheY-like superfamily VI35_10530 26dd1005217c0dbd41b98ff6791c8e9a 369 Pfam PF13487 HD domain 232 302 4.4E-18 T 17-10-2018 VI35_14300 bef5891d7fe9488f64753d08e2428156 336 SUPERFAMILY SSF53822 66 322 7.46E-48 T 17-10-2018 IPR028082 Periplasmic binding protein-like I VI35_14300 bef5891d7fe9488f64753d08e2428156 336 Gene3D G3DSA:3.40.50.2300 68 156 2.0E-20 T 17-10-2018 VI35_14300 bef5891d7fe9488f64753d08e2428156 336 Gene3D G3DSA:1.10.260.40 7 67 1.3E-21 T 17-10-2018 VI35_14300 bef5891d7fe9488f64753d08e2428156 336 SUPERFAMILY SSF47413 7 63 1.2E-14 T 17-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VI35_14300 bef5891d7fe9488f64753d08e2428156 336 SMART SM00354 6 79 1.8E-26 T 17-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VI35_14300 bef5891d7fe9488f64753d08e2428156 336 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 56 4.7E-15 T 17-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VI35_14300 bef5891d7fe9488f64753d08e2428156 336 Gene3D G3DSA:3.40.50.2300 160 335 4.7E-31 T 17-10-2018 VI35_14300 bef5891d7fe9488f64753d08e2428156 336 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 70 240 5.1E-15 T 17-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain VI35_06510 7ffeaad7c53223cb2127c89b639d35bc 246 Gene3D G3DSA:3.30.70.980 85 235 1.7E-61 T 17-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_06510 7ffeaad7c53223cb2127c89b639d35bc 246 Pfam PF01709 Transcriptional regulator 5 235 3.3E-97 T 17-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_06510 7ffeaad7c53223cb2127c89b639d35bc 246 SUPERFAMILY SSF75625 3 244 7.46E-97 T 17-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_06510 7ffeaad7c53223cb2127c89b639d35bc 246 Gene3D G3DSA:1.10.10.200 1 80 1.7E-33 T 17-10-2018 IPR017856 Integrase-like, N-terminal VI35_06510 7ffeaad7c53223cb2127c89b639d35bc 246 Gene3D G3DSA:3.30.70.980 130 204 1.7E-61 T 17-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_06510 7ffeaad7c53223cb2127c89b639d35bc 246 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 238 36.337 T 17-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_06510 7ffeaad7c53223cb2127c89b639d35bc 246 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 236 2.1E-101 T 17-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_17325 ae13cbb244339f50487f99630523ee12 174 Pfam PF00691 OmpA family 73 168 9.8E-22 T 17-10-2018 IPR006665 OmpA-like domain VI35_17325 ae13cbb244339f50487f99630523ee12 174 SUPERFAMILY SSF103088 60 173 8.89E-34 T 17-10-2018 IPR036737 OmpA-like domain superfamily VI35_17325 ae13cbb244339f50487f99630523ee12 174 Gene3D G3DSA:3.30.1330.60 47 174 2.8E-40 T 17-10-2018 IPR036737 OmpA-like domain superfamily VI35_17325 ae13cbb244339f50487f99630523ee12 174 PRINTS PR01021 OMPA domain signature 119 135 2.6E-15 T 17-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VI35_17325 ae13cbb244339f50487f99630523ee12 174 PRINTS PR01021 OMPA domain signature 104 119 2.6E-15 T 17-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VI35_17325 ae13cbb244339f50487f99630523ee12 174 PRINTS PR01021 OMPA domain signature 74 96 2.6E-15 T 17-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VI35_17325 ae13cbb244339f50487f99630523ee12 174 ProSitePatterns PS01068 OmpA-like domain. 106 150 - T 17-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 VI35_17325 ae13cbb244339f50487f99630523ee12 174 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 72 174 6.7E-44 T 17-10-2018 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal GO:0009279 VI35_17325 ae13cbb244339f50487f99630523ee12 174 Hamap MF_02204 Peptidoglycan-associated lipoprotein [pal]. 5 174 30.491 T 17-10-2018 IPR039001 Peptidoglycan-associated lipoprotein GO:0009279|GO:0051301 VI35_07435 dafbb50401d14ec46723544a6b75b946 693 Pfam PF01973 Protein of unknown function DUF115 284 457 4.0E-26 T 17-10-2018 IPR002826 6-hydroxymethylpterin diphosphokinase MptE-like VI35_17570 5ab493777423db953455c37f725cb57b 559 Gene3D G3DSA:1.10.287.950 203 534 1.6E-70 T 17-10-2018 VI35_17570 5ab493777423db953455c37f725cb57b 559 Gene3D G3DSA:3.30.450.20 37 178 1.7E-30 T 17-10-2018 VI35_17570 5ab493777423db953455c37f725cb57b 559 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 343 498 2.9E-43 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_17570 5ab493777423db953455c37f725cb57b 559 Pfam PF00672 HAMP domain 204 243 3.7E-9 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_17570 5ab493777423db953455c37f725cb57b 559 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 398 427 1.1E-22 T 17-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VI35_17570 5ab493777423db953455c37f725cb57b 559 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 11 36 1.1E-22 T 17-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VI35_17570 5ab493777423db953455c37f725cb57b 559 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 369 396 1.1E-22 T 17-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VI35_17570 5ab493777423db953455c37f725cb57b 559 SUPERFAMILY SSF58104 224 533 6.41E-70 T 17-10-2018 VI35_17570 5ab493777423db953455c37f725cb57b 559 SMART SM00283 271 532 1.5E-70 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_17570 5ab493777423db953455c37f725cb57b 559 SMART SM01049 36 118 1.4E-24 T 17-10-2018 IPR033480 Single Cache domain 2 VI35_17570 5ab493777423db953455c37f725cb57b 559 SMART SM00304 257 309 90.0 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_17570 5ab493777423db953455c37f725cb57b 559 SMART SM00304 204 256 2.4E-9 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_17570 5ab493777423db953455c37f725cb57b 559 Pfam PF17200 Single Cache domain 2 39 180 4.7E-26 T 17-10-2018 IPR033480 Single Cache domain 2 VI35_19860 41f246099949a94e47b9e3cbb24d47c4 237 SMART SM00322 60 125 3.5E-7 T 17-10-2018 IPR004087 K Homology domain GO:0003676 VI35_19860 41f246099949a94e47b9e3cbb24d47c4 237 Gene3D G3DSA:3.30.300.20 17 107 5.2E-30 T 17-10-2018 IPR015946 K homology domain-like, alpha/beta VI35_19860 41f246099949a94e47b9e3cbb24d47c4 237 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 39.118 T 17-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 VI35_19860 41f246099949a94e47b9e3cbb24d47c4 237 SUPERFAMILY SSF54814 2 106 1.44E-37 T 17-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 VI35_19860 41f246099949a94e47b9e3cbb24d47c4 237 Gene3D G3DSA:3.30.1140.32 108 208 2.3E-45 T 17-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19860 41f246099949a94e47b9e3cbb24d47c4 237 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 7.7E-42 T 17-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19860 41f246099949a94e47b9e3cbb24d47c4 237 SUPERFAMILY SSF54821 108 206 2.35E-40 T 17-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19860 41f246099949a94e47b9e3cbb24d47c4 237 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 3.3E-99 T 17-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 VI35_19860 41f246099949a94e47b9e3cbb24d47c4 237 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 17-10-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19860 41f246099949a94e47b9e3cbb24d47c4 237 Pfam PF07650 KH domain 39 111 1.9E-18 T 17-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_14170 140b0f5ad83df3ab0498511477e910ba 99 Pfam PF12977 Domain of Unknown Function with PDB structure (DUF3861) 3 85 9.4E-27 T 17-10-2018 IPR024476 Protein of unknown function DUF3861 VI35_14170 140b0f5ad83df3ab0498511477e910ba 99 Gene3D G3DSA:1.10.225.20 1 87 1.6E-32 T 17-10-2018 VI35_19985 0f3dbfefadd2520a36fe85bcaf315373 129 Gene3D G3DSA:3.10.450.50 10 117 5.4E-7 T 17-10-2018 VI35_19985 0f3dbfefadd2520a36fe85bcaf315373 129 SUPERFAMILY SSF54427 22 111 1.96E-8 T 17-10-2018 IPR032710 NTF2-like domain superfamily VI35_08780 e2a6125ebd3c3dc0a86996d3339b70c0 426 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 420 3.1E-157 T 17-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 VI35_08780 e2a6125ebd3c3dc0a86996d3339b70c0 426 SUPERFAMILY SSF55205 1 423 2.35E-143 T 17-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 VI35_08780 e2a6125ebd3c3dc0a86996d3339b70c0 426 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 10 426 35.085 T 17-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 VI35_08780 e2a6125ebd3c3dc0a86996d3339b70c0 426 PIRSF PIRSF000505 3 426 2.5E-154 T 17-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 VI35_08780 e2a6125ebd3c3dc0a86996d3339b70c0 426 Gene3D G3DSA:3.65.10.10 242 418 1.6E-153 T 17-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 VI35_08780 e2a6125ebd3c3dc0a86996d3339b70c0 426 ProSitePatterns PS00104 EPSP synthase signature 1. 90 104 - T 17-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 VI35_08780 e2a6125ebd3c3dc0a86996d3339b70c0 426 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 14 424 7.6E-139 T 17-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 VI35_08780 e2a6125ebd3c3dc0a86996d3339b70c0 426 ProSitePatterns PS00885 EPSP synthase signature 2. 338 356 - T 17-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 VI35_08780 e2a6125ebd3c3dc0a86996d3339b70c0 426 Gene3D G3DSA:3.65.10.10 20 224 1.6E-153 T 17-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 VI35_12010 675fa5e4a73a0f064bf906638bd9042f 237 Pfam PF04055 Radical SAM superfamily 40 138 2.9E-11 T 17-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VI35_12010 675fa5e4a73a0f064bf906638bd9042f 237 Gene3D G3DSA:3.20.20.70 16 237 4.5E-53 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_12010 675fa5e4a73a0f064bf906638bd9042f 237 TIGRFAM TIGR04322 rSAM_QueE_Ecoli: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 23 237 3.8E-107 T 17-10-2018 IPR027609 Putative 7-carboxy-7-deazaguanine synthase QueE, Proteobacteria KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 VI35_12010 675fa5e4a73a0f064bf906638bd9042f 237 Pfam PF13394 4Fe-4S single cluster domain 38 141 2.7E-12 T 17-10-2018 VI35_12010 675fa5e4a73a0f064bf906638bd9042f 237 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 17 237 35.381 T 17-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 VI35_12010 675fa5e4a73a0f064bf906638bd9042f 237 SUPERFAMILY SSF102114 37 133 1.57E-7 T 17-10-2018 VI35_12010 675fa5e4a73a0f064bf906638bd9042f 237 PIRSF PIRSF000370 15 237 8.8E-67 T 17-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 VI35_20675 5323b329f3a0132f998758da69129116 645 SUPERFAMILY SSF56801 21 637 6.41E-130 T 17-10-2018 VI35_20675 5323b329f3a0132f998758da69129116 645 Pfam PF13193 AMP-binding enzyme C-terminal domain 537 607 6.9E-7 T 17-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain VI35_20675 5323b329f3a0132f998758da69129116 645 Gene3D G3DSA:3.40.50.12780 67 515 9.1E-62 T 17-10-2018 VI35_20675 5323b329f3a0132f998758da69129116 645 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 37 92 7.1E-7 T 17-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 VI35_20675 5323b329f3a0132f998758da69129116 645 Gene3D G3DSA:3.30.300.30 519 643 9.9E-18 T 17-10-2018 VI35_20675 5323b329f3a0132f998758da69129116 645 Pfam PF00501 AMP-binding enzyme 95 519 3.7E-51 T 17-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 VI35_20675 5323b329f3a0132f998758da69129116 645 TIGRFAM TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase 5 643 3.1E-274 T 17-10-2018 IPR005914 Acetoacetyl-CoA synthase GO:0006629|GO:0030729 KEGG: 00280+6.2.1.16|KEGG: 00650+6.2.1.16|Reactome: R-HSA-77111 VI35_20675 5323b329f3a0132f998758da69129116 645 ProSitePatterns PS00455 Putative AMP-binding domain signature. 263 274 - T 17-10-2018 IPR020845 AMP-binding, conserved site VI35_02995 87a63b8db9a1afa79d8d8ed801dd0b96 242 Gene3D G3DSA:3.40.630.30 19 237 7.1E-57 T 17-10-2018 VI35_02995 87a63b8db9a1afa79d8d8ed801dd0b96 242 Pfam PF13302 Acetyltransferase (GNAT) domain 39 176 8.2E-10 T 17-10-2018 IPR000182 GNAT domain VI35_02995 87a63b8db9a1afa79d8d8ed801dd0b96 242 SUPERFAMILY SSF55729 32 200 6.5E-32 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_16965 76a6599a4e294f7fc92ea99985c67717 414 Gene3D G3DSA:3.40.50.300 217 406 1.8E-47 T 17-10-2018 VI35_16965 76a6599a4e294f7fc92ea99985c67717 414 Pfam PF00271 Helicase conserved C-terminal domain 244 342 4.6E-27 T 17-10-2018 IPR001650 Helicase, C-terminal VI35_16965 76a6599a4e294f7fc92ea99985c67717 414 Pfam PF00270 DEAD/DEAH box helicase 28 195 1.4E-49 T 17-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VI35_16965 76a6599a4e294f7fc92ea99985c67717 414 Gene3D G3DSA:3.40.50.300 1 213 2.5E-77 T 17-10-2018 VI35_16965 76a6599a4e294f7fc92ea99985c67717 414 SMART SM00490 261 342 5.2E-32 T 17-10-2018 IPR001650 Helicase, C-terminal VI35_16965 76a6599a4e294f7fc92ea99985c67717 414 SUPERFAMILY SSF52540 77 359 3.39E-72 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_16965 76a6599a4e294f7fc92ea99985c67717 414 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 156 164 - T 17-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VI35_16965 76a6599a4e294f7fc92ea99985c67717 414 SMART SM00487 23 225 6.6E-59 T 17-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VI35_08430 e2be7badaf210d3fb0095fa666368be1 416 TIGRFAM TIGR03354 VI_FHA: type VI secretion system FHA domain protein 8 410 1.5E-136 T 17-10-2018 IPR017735 Type VI secretion system, FHA domain-containing protein VI35_08430 e2be7badaf210d3fb0095fa666368be1 416 SUPERFAMILY SSF49879 9 107 1.99E-8 T 17-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 VI35_08430 e2be7badaf210d3fb0095fa666368be1 416 Pfam PF00498 FHA domain 34 101 2.7E-5 T 17-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 VI35_08430 e2be7badaf210d3fb0095fa666368be1 416 Gene3D G3DSA:2.60.200.20 3 111 1.4E-9 T 17-10-2018 VI35_07170 d7e3b7fa475a586277613d1c472997b6 196 SUPERFAMILY SSF49772 63 193 1.57E-49 T 17-10-2018 IPR036198 Ecotin superfamily VI35_07170 d7e3b7fa475a586277613d1c472997b6 196 Pfam PF03974 Ecotin 65 186 2.8E-46 T 17-10-2018 IPR005658 Proteinase inhibitor I11, ecotin VI35_07170 d7e3b7fa475a586277613d1c472997b6 196 PIRSF PIRSF006865 45 196 2.4E-48 T 17-10-2018 IPR005658 Proteinase inhibitor I11, ecotin VI35_07170 d7e3b7fa475a586277613d1c472997b6 196 Gene3D G3DSA:4.10.1230.10 140 196 4.0E-23 T 17-10-2018 IPR027438 Ecotin, C-terminal VI35_07170 d7e3b7fa475a586277613d1c472997b6 196 Gene3D G3DSA:2.60.40.550 58 139 3.1E-26 T 17-10-2018 VI35_19875 35252cedcc38d92c9b50453a0c1c3481 273 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 125 249 2.2E-55 T 17-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 VI35_19875 35252cedcc38d92c9b50453a0c1c3481 273 SUPERFAMILY SSF50104 126 269 4.69E-59 T 17-10-2018 IPR008991 Translation protein SH3-like domain superfamily VI35_19875 35252cedcc38d92c9b50453a0c1c3481 273 PIRSF PIRSF002158 12 273 2.0E-101 T 17-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_19875 35252cedcc38d92c9b50453a0c1c3481 273 Gene3D G3DSA:2.30.30.30 115 195 8.9E-33 T 17-10-2018 IPR014722 Ribosomal protein L2, domain 2 VI35_19875 35252cedcc38d92c9b50453a0c1c3481 273 Gene3D G3DSA:4.10.950.10 196 273 2.5E-36 T 17-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19875 35252cedcc38d92c9b50453a0c1c3481 273 SMART SM01382 124 251 7.1E-90 T 17-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 VI35_19875 35252cedcc38d92c9b50453a0c1c3481 273 SMART SM01383 42 118 2.6E-46 T 17-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_19875 35252cedcc38d92c9b50453a0c1c3481 273 Gene3D G3DSA:2.40.50.140 1 114 8.6E-51 T 17-10-2018 VI35_19875 35252cedcc38d92c9b50453a0c1c3481 273 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 272 1.2E-131 T 17-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 VI35_19875 35252cedcc38d92c9b50453a0c1c3481 273 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 272 47.232 T 17-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 VI35_19875 35252cedcc38d92c9b50453a0c1c3481 273 SUPERFAMILY SSF50249 2 125 8.91E-50 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_19875 35252cedcc38d92c9b50453a0c1c3481 273 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 3.2E-34 T 17-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_16330 2133ce6c7dd4f72eb07c153706f4e4f7 81 PIRSF PIRSF006169 1 76 2.2E-32 T 17-10-2018 IPR010648 Uncharacterised protein family UPF0270 VI35_16330 2133ce6c7dd4f72eb07c153706f4e4f7 81 Pfam PF06794 Uncharacterised protein family (UPF0270) 1 68 9.4E-32 T 17-10-2018 IPR010648 Uncharacterised protein family UPF0270 VI35_16330 2133ce6c7dd4f72eb07c153706f4e4f7 81 SUPERFAMILY SSF118001 1 71 2.88E-26 T 17-10-2018 IPR036685 YehU-like superfamily VI35_16330 2133ce6c7dd4f72eb07c153706f4e4f7 81 Gene3D G3DSA:1.10.10.610 1 74 5.7E-27 T 17-10-2018 IPR036685 YehU-like superfamily VI35_16330 2133ce6c7dd4f72eb07c153706f4e4f7 81 ProDom PD026997 UPF0270 YHEU SO0879 3D-STRUCTURE LYASE PLU0398 YPO0179/Y3960/YP0178 ENOLASE HD0737 PSPTO1630 1 67 4.0E-22 T 17-10-2018 IPR010648 Uncharacterised protein family UPF0270 VI35_04100 8bfb4afb70edafb863449ec971a455a0 393 Gene3D G3DSA:3.40.640.10 64 283 1.7E-133 T 17-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VI35_04100 8bfb4afb70edafb863449ec971a455a0 393 SUPERFAMILY SSF53383 2 391 1.64E-107 T 17-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VI35_04100 8bfb4afb70edafb863449ec971a455a0 393 Gene3D G3DSA:3.90.1150.10 17 389 1.7E-133 T 17-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VI35_04100 8bfb4afb70edafb863449ec971a455a0 393 Pfam PF00155 Aminotransferase class I and II 43 385 6.2E-38 T 17-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 VI35_14235 62421b927084d9b0e133fcfe7d842be5 125 Gene3D G3DSA:2.40.50.320 54 125 1.2E-21 T 17-10-2018 VI35_14235 62421b927084d9b0e133fcfe7d842be5 125 Pfam PF11604 Copper binding periplasmic protein CusF 58 124 5.4E-25 T 17-10-2018 IPR021647 Copper binding periplasmic protein CusF VI35_07665 05dcb3dfb103cc0ddfa95415a8409d22 303 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 25 65 3.2E-12 T 17-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain VI35_07665 05dcb3dfb103cc0ddfa95415a8409d22 303 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 121 301 3.3E-26 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_07665 05dcb3dfb103cc0ddfa95415a8409d22 303 Gene3D G3DSA:1.10.3720.10 96 299 1.8E-18 T 17-10-2018 IPR035906 MetI-like superfamily VI35_07665 05dcb3dfb103cc0ddfa95415a8409d22 303 SUPERFAMILY SSF161098 100 284 1.96E-24 T 17-10-2018 IPR035906 MetI-like superfamily VI35_21045 092e158c175a151a110e31634c7968ca 220 SUPERFAMILY SSF74653 137 202 6.02E-23 T 17-10-2018 VI35_21045 092e158c175a151a110e31634c7968ca 220 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 143 217 1.2E-21 T 17-10-2018 IPR037682 TonB, C-terminal GO:0055085 VI35_21045 092e158c175a151a110e31634c7968ca 220 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 144 218 1.1E-21 T 17-10-2018 IPR006260 TonB/TolA, C-terminal VI35_21045 092e158c175a151a110e31634c7968ca 220 PRINTS PR01374 Gram-negative bacterial tonB protein signature 62 72 9.9E-19 T 17-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 VI35_21045 092e158c175a151a110e31634c7968ca 220 PRINTS PR01374 Gram-negative bacterial tonB protein signature 178 195 9.9E-19 T 17-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 VI35_21045 092e158c175a151a110e31634c7968ca 220 PRINTS PR01374 Gram-negative bacterial tonB protein signature 138 159 9.9E-19 T 17-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 VI35_21045 092e158c175a151a110e31634c7968ca 220 PRINTS PR01374 Gram-negative bacterial tonB protein signature 159 177 9.9E-19 T 17-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 VI35_21045 092e158c175a151a110e31634c7968ca 220 Gene3D G3DSA:3.30.2420.10 135 220 2.5E-27 T 17-10-2018 VI35_04955 83247397a195db8e81a1811dc3d69001 446 Gene3D G3DSA:3.30.2290.10 3 209 2.6E-31 T 17-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal VI35_04955 83247397a195db8e81a1811dc3d69001 446 SUPERFAMILY SSF111283 3 446 5.75E-86 T 17-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 VI35_04955 83247397a195db8e81a1811dc3d69001 446 Pfam PF01523 Putative modulator of DNA gyrase 23 311 2.3E-39 T 17-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 VI35_07600 ff1c3b299a139fe56ed95a2c31833bdf 477 Gene3D G3DSA:3.50.80.20 73 172 6.8E-10 T 17-10-2018 VI35_07600 ff1c3b299a139fe56ed95a2c31833bdf 477 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 26 440 2.7E-96 T 17-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VI35_07600 ff1c3b299a139fe56ed95a2c31833bdf 477 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 412 425 2.5E-29 T 17-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VI35_07600 ff1c3b299a139fe56ed95a2c31833bdf 477 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 275 297 2.5E-29 T 17-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VI35_07600 ff1c3b299a139fe56ed95a2c31833bdf 477 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 333 347 2.5E-29 T 17-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VI35_07600 ff1c3b299a139fe56ed95a2c31833bdf 477 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 49 68 2.5E-29 T 17-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VI35_07600 ff1c3b299a139fe56ed95a2c31833bdf 477 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 348 362 2.5E-29 T 17-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VI35_07600 ff1c3b299a139fe56ed95a2c31833bdf 477 Gene3D G3DSA:3.40.710.10 263 469 9.9E-60 T 17-10-2018 VI35_07600 ff1c3b299a139fe56ed95a2c31833bdf 477 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 42 432 1.4E-95 T 17-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VI35_07600 ff1c3b299a139fe56ed95a2c31833bdf 477 SUPERFAMILY SSF56601 23 457 1.88E-81 T 17-10-2018 IPR012338 Beta-lactamase/transpeptidase-like VI35_17170 404ac384f360ea62cfbf1555edb1f7d0 158 SMART SM00344 4 114 1.3E-39 T 17-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 VI35_17170 404ac384f360ea62cfbf1555edb1f7d0 158 Gene3D G3DSA:1.10.10.10 5 56 1.1E-22 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_17170 404ac384f360ea62cfbf1555edb1f7d0 158 ProSitePatterns PS00519 AsnC-type HTH domain signature. 22 48 - T 17-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site VI35_17170 404ac384f360ea62cfbf1555edb1f7d0 158 Pfam PF01037 Lrp/AsnC ligand binding domain 70 144 1.3E-24 T 17-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain VI35_17170 404ac384f360ea62cfbf1555edb1f7d0 158 SUPERFAMILY SSF46785 2 92 7.34E-20 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_17170 404ac384f360ea62cfbf1555edb1f7d0 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 3.2E-18 T 17-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VI35_17170 404ac384f360ea62cfbf1555edb1f7d0 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 3.2E-18 T 17-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VI35_17170 404ac384f360ea62cfbf1555edb1f7d0 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 3.2E-18 T 17-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VI35_17170 404ac384f360ea62cfbf1555edb1f7d0 158 Gene3D G3DSA:3.30.70.920 57 142 2.2E-27 T 17-10-2018 VI35_17170 404ac384f360ea62cfbf1555edb1f7d0 158 SUPERFAMILY SSF54909 65 154 2.82E-22 T 17-10-2018 IPR011008 Dimeric alpha-beta barrel VI35_17170 404ac384f360ea62cfbf1555edb1f7d0 158 Pfam PF13412 Winged helix-turn-helix DNA-binding 4 50 5.3E-21 T 17-10-2018 VI35_07565 f8cd95ee4c7b0b5189128e96cd7ec938 432 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 32 139 1.9E-13 T 17-10-2018 IPR000014 PAS domain VI35_07565 f8cd95ee4c7b0b5189128e96cd7ec938 432 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 141 257 1.2E-13 T 17-10-2018 IPR000014 PAS domain VI35_07565 f8cd95ee4c7b0b5189128e96cd7ec938 432 SMART SM00091 140 208 0.002 T 17-10-2018 IPR000014 PAS domain VI35_07565 f8cd95ee4c7b0b5189128e96cd7ec938 432 SMART SM00091 22 88 2.5 T 17-10-2018 IPR000014 PAS domain VI35_07565 f8cd95ee4c7b0b5189128e96cd7ec938 432 SMART SM00283 230 431 3.1E-22 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_07565 f8cd95ee4c7b0b5189128e96cd7ec938 432 Gene3D G3DSA:1.10.287.950 250 432 1.6E-41 T 17-10-2018 VI35_07565 f8cd95ee4c7b0b5189128e96cd7ec938 432 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 294 431 6.1E-36 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_07565 f8cd95ee4c7b0b5189128e96cd7ec938 432 Gene3D G3DSA:3.30.450.20 143 249 9.8E-18 T 17-10-2018 VI35_07565 f8cd95ee4c7b0b5189128e96cd7ec938 432 Pfam PF13426 PAS domain 159 254 9.1E-11 T 17-10-2018 IPR000014 PAS domain VI35_07565 f8cd95ee4c7b0b5189128e96cd7ec938 432 SUPERFAMILY SSF58104 247 430 2.88E-48 T 17-10-2018 VI35_07565 f8cd95ee4c7b0b5189128e96cd7ec938 432 SMART SM00086 213 255 0.0029 T 17-10-2018 IPR001610 PAC motif VI35_07565 f8cd95ee4c7b0b5189128e96cd7ec938 432 SMART SM00086 94 135 0.17 T 17-10-2018 IPR001610 PAC motif VI35_07565 f8cd95ee4c7b0b5189128e96cd7ec938 432 SUPERFAMILY SSF55785 31 135 7.33E-21 T 17-10-2018 IPR035965 PAS domain superfamily VI35_07565 f8cd95ee4c7b0b5189128e96cd7ec938 432 SUPERFAMILY SSF55785 153 256 1.92E-20 T 17-10-2018 IPR035965 PAS domain superfamily VI35_07565 f8cd95ee4c7b0b5189128e96cd7ec938 432 Pfam PF08447 PAS fold 44 129 1.1E-10 T 17-10-2018 IPR013655 PAS fold-3 GO:0005515 VI35_07565 f8cd95ee4c7b0b5189128e96cd7ec938 432 Gene3D G3DSA:3.30.450.20 10 142 3.0E-19 T 17-10-2018 VI35_01405 a4c4d4138fef0ff1d6141a1f7751fcdb 110 Pfam PF07883 Cupin domain 47 109 1.2E-7 T 17-10-2018 IPR013096 Cupin 2, conserved barrel VI35_01405 a4c4d4138fef0ff1d6141a1f7751fcdb 110 Gene3D G3DSA:2.60.120.10 16 110 2.4E-35 T 17-10-2018 IPR014710 RmlC-like jelly roll fold VI35_01405 a4c4d4138fef0ff1d6141a1f7751fcdb 110 SUPERFAMILY SSF51182 5 109 2.43E-16 T 17-10-2018 IPR011051 RmlC-like cupin domain superfamily VI35_12090 8c5e96156f52c5c5e0aa92b48f5881c8 520 Pfam PF03806 AbgT putative transporter family 19 517 1.3E-197 T 17-10-2018 IPR004697 p-Aminobenzoyl-glutamate transport protein AbgT GO:0015558|GO:1902604 VI35_14295 8f84b2304851c76580852e65a3632c32 242 Gene3D G3DSA:3.30.70.260 153 242 3.2E-5 T 17-10-2018 VI35_14295 8f84b2304851c76580852e65a3632c32 242 Pfam PF02308 MgtC family 19 143 3.4E-35 T 17-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 VI35_14295 8f84b2304851c76580852e65a3632c32 242 PRINTS PR01837 MgtC/SapB protein signature 98 122 1.6E-40 T 17-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 VI35_14295 8f84b2304851c76580852e65a3632c32 242 PRINTS PR01837 MgtC/SapB protein signature 22 41 1.6E-40 T 17-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 VI35_14295 8f84b2304851c76580852e65a3632c32 242 PRINTS PR01837 MgtC/SapB protein signature 71 93 1.6E-40 T 17-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 VI35_14295 8f84b2304851c76580852e65a3632c32 242 PRINTS PR01837 MgtC/SapB protein signature 41 59 1.6E-40 T 17-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 VI35_01065 d128be8f5d4ca08d80f1a7d4611686e1 153 Gene3D G3DSA:3.40.630.30 12 146 1.9E-33 T 17-10-2018 VI35_01065 d128be8f5d4ca08d80f1a7d4611686e1 153 SUPERFAMILY SSF55729 13 151 4.39E-31 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_01065 d128be8f5d4ca08d80f1a7d4611686e1 153 Pfam PF00583 Acetyltransferase (GNAT) family 37 140 1.2E-12 T 17-10-2018 IPR000182 GNAT domain VI35_03340 d46173fd80ab155ea9e0b7e052140404 265 SUPERFAMILY SSF101386 5 107 2.18E-25 T 17-10-2018 VI35_03340 d46173fd80ab155ea9e0b7e052140404 265 Gene3D G3DSA:1.10.287.1080 132 264 3.4E-46 T 17-10-2018 VI35_03340 d46173fd80ab155ea9e0b7e052140404 265 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 171 232 4.2E-8 T 17-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core VI35_03340 d46173fd80ab155ea9e0b7e052140404 265 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 30 103 1.8E-26 T 17-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core VI35_03340 d46173fd80ab155ea9e0b7e052140404 265 SUPERFAMILY SSF101386 138 238 1.8E-24 T 17-10-2018 VI35_03340 d46173fd80ab155ea9e0b7e052140404 265 Gene3D G3DSA:1.10.287.1080 4 128 5.2E-44 T 17-10-2018 VI35_03340 d46173fd80ab155ea9e0b7e052140404 265 TIGRFAM TIGR00444 mazG: MazG family protein 13 260 1.7E-105 T 17-10-2018 IPR011551 NTP pyrophosphohydrolase MazG VI35_03090 c4bf4dc9ebd2f2719be198032bf5909f 825 Pfam PF02368 Bacterial Ig-like domain (group 2) 41 115 5.4E-10 T 17-10-2018 IPR003343 Bacterial Ig-like, group 2 VI35_03090 c4bf4dc9ebd2f2719be198032bf5909f 825 Pfam PF02368 Bacterial Ig-like domain (group 2) 421 501 4.9E-10 T 17-10-2018 IPR003343 Bacterial Ig-like, group 2 VI35_03090 c4bf4dc9ebd2f2719be198032bf5909f 825 Pfam PF02368 Bacterial Ig-like domain (group 2) 517 596 5.2E-6 T 17-10-2018 IPR003343 Bacterial Ig-like, group 2 VI35_03090 c4bf4dc9ebd2f2719be198032bf5909f 825 Pfam PF02368 Bacterial Ig-like domain (group 2) 325 406 9.4E-12 T 17-10-2018 IPR003343 Bacterial Ig-like, group 2 VI35_03090 c4bf4dc9ebd2f2719be198032bf5909f 825 Pfam PF02368 Bacterial Ig-like domain (group 2) 229 304 1.9E-11 T 17-10-2018 IPR003343 Bacterial Ig-like, group 2 VI35_03090 c4bf4dc9ebd2f2719be198032bf5909f 825 Pfam PF02368 Bacterial Ig-like domain (group 2) 616 695 1.4E-10 T 17-10-2018 IPR003343 Bacterial Ig-like, group 2 VI35_03090 c4bf4dc9ebd2f2719be198032bf5909f 825 Pfam PF02368 Bacterial Ig-like domain (group 2) 133 211 3.2E-11 T 17-10-2018 IPR003343 Bacterial Ig-like, group 2 VI35_03090 c4bf4dc9ebd2f2719be198032bf5909f 825 SUPERFAMILY SSF49373 550 610 2.43E-5 T 17-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments VI35_03090 c4bf4dc9ebd2f2719be198032bf5909f 825 SUPERFAMILY SSF49373 616 706 2.47E-8 T 17-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments VI35_03090 c4bf4dc9ebd2f2719be198032bf5909f 825 SUPERFAMILY SSF49373 69 127 1.29E-8 T 17-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments VI35_03090 c4bf4dc9ebd2f2719be198032bf5909f 825 Gene3D G3DSA:2.60.40.1080 616 712 8.9E-21 T 17-10-2018 VI35_03090 c4bf4dc9ebd2f2719be198032bf5909f 825 Gene3D G3DSA:2.60.40.1080 420 515 2.0E-20 T 17-10-2018 VI35_03090 c4bf4dc9ebd2f2719be198032bf5909f 825 Gene3D G3DSA:2.60.40.1080 132 227 3.2E-22 T 17-10-2018 VI35_03090 c4bf4dc9ebd2f2719be198032bf5909f 825 Gene3D G3DSA:2.60.40.1080 324 419 4.5E-22 T 17-10-2018 VI35_03090 c4bf4dc9ebd2f2719be198032bf5909f 825 Gene3D G3DSA:2.60.40.1080 35 131 3.0E-21 T 17-10-2018 VI35_03090 c4bf4dc9ebd2f2719be198032bf5909f 825 Gene3D G3DSA:2.60.40.1080 516 615 3.0E-16 T 17-10-2018 VI35_03090 c4bf4dc9ebd2f2719be198032bf5909f 825 Gene3D G3DSA:2.60.40.1080 228 323 1.0E-22 T 17-10-2018 VI35_03090 c4bf4dc9ebd2f2719be198032bf5909f 825 SMART SM00635 616 703 9.6E-11 T 17-10-2018 IPR003343 Bacterial Ig-like, group 2 VI35_03090 c4bf4dc9ebd2f2719be198032bf5909f 825 SMART SM00635 132 219 8.0E-10 T 17-10-2018 IPR003343 Bacterial Ig-like, group 2 VI35_03090 c4bf4dc9ebd2f2719be198032bf5909f 825 SMART SM00635 324 411 4.1E-13 T 17-10-2018 IPR003343 Bacterial Ig-like, group 2 VI35_03090 c4bf4dc9ebd2f2719be198032bf5909f 825 SMART SM00635 516 607 1.1E-5 T 17-10-2018 IPR003343 Bacterial Ig-like, group 2 VI35_03090 c4bf4dc9ebd2f2719be198032bf5909f 825 SMART SM00635 36 123 5.5E-8 T 17-10-2018 IPR003343 Bacterial Ig-like, group 2 VI35_03090 c4bf4dc9ebd2f2719be198032bf5909f 825 SMART SM00635 228 315 1.9E-12 T 17-10-2018 IPR003343 Bacterial Ig-like, group 2 VI35_03090 c4bf4dc9ebd2f2719be198032bf5909f 825 SMART SM00635 420 507 1.1E-8 T 17-10-2018 IPR003343 Bacterial Ig-like, group 2 VI35_03090 c4bf4dc9ebd2f2719be198032bf5909f 825 SUPERFAMILY SSF49373 420 508 3.92E-10 T 17-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments VI35_03090 c4bf4dc9ebd2f2719be198032bf5909f 825 SUPERFAMILY SSF49373 132 223 2.28E-9 T 17-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments VI35_03090 c4bf4dc9ebd2f2719be198032bf5909f 825 SUPERFAMILY SSF49373 228 311 8.63E-10 T 17-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments VI35_03090 c4bf4dc9ebd2f2719be198032bf5909f 825 SUPERFAMILY SSF49373 324 405 3.65E-9 T 17-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments VI35_06175 66a68501edf27eedc47f2efd7a3a7428 470 Hamap MF_00675 Uronate isomerase [uxaC]. 2 467 48.594 T 17-10-2018 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 VI35_06175 66a68501edf27eedc47f2efd7a3a7428 470 SUPERFAMILY SSF51556 3 465 4.08E-176 T 17-10-2018 IPR032466 Metal-dependent hydrolase VI35_06175 66a68501edf27eedc47f2efd7a3a7428 470 Gene3D G3DSA:1.10.2020.10 46 137 1.8E-198 T 17-10-2018 VI35_06175 66a68501edf27eedc47f2efd7a3a7428 470 Pfam PF02614 Glucuronate isomerase 1 465 1.5E-218 T 17-10-2018 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 VI35_06175 66a68501edf27eedc47f2efd7a3a7428 470 Gene3D G3DSA:3.20.20.140 7 465 1.8E-198 T 17-10-2018 VI35_18270 c2fa712730ecd853b51306dae808f107 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 1.4E-32 T 17-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VI35_18270 c2fa712730ecd853b51306dae808f107 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 17-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 VI35_18270 c2fa712730ecd853b51306dae808f107 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 2.3E-19 T 17-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VI35_18270 c2fa712730ecd853b51306dae808f107 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 2.3E-19 T 17-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VI35_18270 c2fa712730ecd853b51306dae808f107 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 2.3E-19 T 17-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VI35_18270 c2fa712730ecd853b51306dae808f107 90 SMART SM00411 1 90 7.2E-42 T 17-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VI35_18270 c2fa712730ecd853b51306dae808f107 90 SUPERFAMILY SSF47729 1 90 3.53E-32 T 17-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 VI35_18270 c2fa712730ecd853b51306dae808f107 90 Gene3D G3DSA:4.10.520.10 1 90 7.6E-37 T 17-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 VI35_01930 509eaff12873115642f32bd1967fe9d0 196 Gene3D G3DSA:2.102.10.10 43 190 2.1E-49 T 17-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 VI35_01930 509eaff12873115642f32bd1967fe9d0 196 Pfam PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal 3 40 4.4E-15 T 17-10-2018 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 VI35_01930 509eaff12873115642f32bd1967fe9d0 196 PRINTS PR00162 Rieske 2Fe-2S subunit signature 162 174 9.2E-8 T 17-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 VI35_01930 509eaff12873115642f32bd1967fe9d0 196 PRINTS PR00162 Rieske 2Fe-2S subunit signature 149 161 9.2E-8 T 17-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 VI35_01930 509eaff12873115642f32bd1967fe9d0 196 PRINTS PR00162 Rieske 2Fe-2S subunit signature 119 130 9.2E-8 T 17-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 VI35_01930 509eaff12873115642f32bd1967fe9d0 196 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 9 190 4.0E-74 T 17-10-2018 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 VI35_01930 509eaff12873115642f32bd1967fe9d0 196 Pfam PF00355 Rieske [2Fe-2S] domain 58 176 3.4E-11 T 17-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 VI35_01930 509eaff12873115642f32bd1967fe9d0 196 SUPERFAMILY SSF50022 30 193 1.44E-45 T 17-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 VI35_04040 5aafd2981513391b355f286aec2cf71c 309 Gene3D G3DSA:1.10.10.10 4 88 3.7E-25 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_04040 5aafd2981513391b355f286aec2cf71c 309 Gene3D G3DSA:3.40.190.290 92 293 1.9E-62 T 17-10-2018 VI35_04040 5aafd2981513391b355f286aec2cf71c 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 4.2E-18 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_04040 5aafd2981513391b355f286aec2cf71c 309 SUPERFAMILY SSF53850 91 298 8.51E-48 T 17-10-2018 VI35_04040 5aafd2981513391b355f286aec2cf71c 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 4.8E-6 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_04040 5aafd2981513391b355f286aec2cf71c 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 4.8E-6 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_04040 5aafd2981513391b355f286aec2cf71c 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 4.8E-6 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_04040 5aafd2981513391b355f286aec2cf71c 309 Pfam PF03466 LysR substrate binding domain 91 294 1.7E-44 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_04040 5aafd2981513391b355f286aec2cf71c 309 SUPERFAMILY SSF46785 5 83 1.36E-19 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_20210 ec700890b4a7cef93087eab94e98d9ee 180 SUPERFAMILY SSF47413 1 67 6.97E-15 T 17-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VI35_20210 ec700890b4a7cef93087eab94e98d9ee 180 SMART SM00530 6 61 2.1E-10 T 17-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VI35_20210 ec700890b4a7cef93087eab94e98d9ee 180 Pfam PF01381 Helix-turn-helix 7 58 2.9E-10 T 17-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VI35_20210 ec700890b4a7cef93087eab94e98d9ee 180 SUPERFAMILY SSF51182 46 179 2.74E-29 T 17-10-2018 IPR011051 RmlC-like cupin domain superfamily VI35_20210 ec700890b4a7cef93087eab94e98d9ee 180 Pfam PF07883 Cupin domain 107 173 4.6E-19 T 17-10-2018 IPR013096 Cupin 2, conserved barrel VI35_20210 ec700890b4a7cef93087eab94e98d9ee 180 Gene3D G3DSA:2.60.120.10 69 174 1.7E-19 T 17-10-2018 IPR014710 RmlC-like jelly roll fold VI35_20210 ec700890b4a7cef93087eab94e98d9ee 180 Gene3D G3DSA:1.10.260.40 1 68 6.6E-15 T 17-10-2018 VI35_08275 5d0d014aaefcfeda78a593f37a086a67 233 Gene3D G3DSA:3.60.20.10 2 222 1.3E-24 T 17-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VI35_08275 5d0d014aaefcfeda78a593f37a086a67 233 Pfam PF00227 Proteasome subunit 4 176 3.4E-6 T 17-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 VI35_08275 5d0d014aaefcfeda78a593f37a086a67 233 SUPERFAMILY SSF56235 2 230 1.08E-33 T 17-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VI35_08275 5d0d014aaefcfeda78a593f37a086a67 233 PIRSF PIRSF009120 1 233 2.6E-99 T 17-10-2018 IPR016545 Uncharacterised conserved protein UCP009120, proteasome-type protease, Sll0069 VI35_07150 a98e33972af59d48ed4a3fed4029b0d0 357 SUPERFAMILY SSF51569 8 346 4.67E-135 T 17-10-2018 VI35_07150 a98e33972af59d48ed4a3fed4029b0d0 357 Gene3D G3DSA:3.20.20.70 4 349 6.7E-152 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_07150 a98e33972af59d48ed4a3fed4029b0d0 357 PIRSF PIRSF001361 1 353 2.6E-157 T 17-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 VI35_07150 a98e33972af59d48ed4a3fed4029b0d0 357 Pfam PF00793 DAHP synthetase I family 42 340 3.2E-99 T 17-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 VI35_07150 a98e33972af59d48ed4a3fed4029b0d0 357 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 11 347 5.4E-155 T 17-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 VI35_08765 b095df3cce9fb60bfd7da498f8b85af7 253 PIRSF PIRSF000090 4 252 6.5E-78 T 17-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 VI35_08765 b095df3cce9fb60bfd7da498f8b85af7 253 SUPERFAMILY SSF52402 4 246 2.58E-76 T 17-10-2018 VI35_08765 b095df3cce9fb60bfd7da498f8b85af7 253 Gene3D G3DSA:3.40.50.620 4 250 2.8E-81 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_08765 b095df3cce9fb60bfd7da498f8b85af7 253 SMART SM00893 26 214 7.8E-58 T 17-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 VI35_08765 b095df3cce9fb60bfd7da498f8b85af7 253 Pfam PF01012 Electron transfer flavoprotein domain 33 208 4.2E-43 T 17-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 VI35_08765 b095df3cce9fb60bfd7da498f8b85af7 253 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 158 178 - T 17-10-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 VI35_03325 6fb9cc29dbab31e8cddef678a2c5ebfa 903 SMART SM00304 198 250 5.4E-8 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_03325 6fb9cc29dbab31e8cddef678a2c5ebfa 903 SMART SM00448 665 778 1.3E-34 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_03325 6fb9cc29dbab31e8cddef678a2c5ebfa 903 SUPERFAMILY SSF158472 199 248 1.57E-6 T 17-10-2018 VI35_03325 6fb9cc29dbab31e8cddef678a2c5ebfa 903 SUPERFAMILY SSF52172 531 649 1.99E-6 T 17-10-2018 IPR011006 CheY-like superfamily VI35_03325 6fb9cc29dbab31e8cddef678a2c5ebfa 903 SMART SM00387 402 519 7.5E-39 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_03325 6fb9cc29dbab31e8cddef678a2c5ebfa 903 SUPERFAMILY SSF47226 792 897 3.27E-13 T 17-10-2018 IPR036641 HPT domain superfamily GO:0000160 VI35_03325 6fb9cc29dbab31e8cddef678a2c5ebfa 903 Gene3D G3DSA:3.40.50.2300 654 791 1.5E-39 T 17-10-2018 VI35_03325 6fb9cc29dbab31e8cddef678a2c5ebfa 903 Gene3D G3DSA:1.20.1480.50 164 254 2.9E-8 T 17-10-2018 VI35_03325 6fb9cc29dbab31e8cddef678a2c5ebfa 903 Gene3D G3DSA:3.30.565.10 354 520 6.3E-53 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_03325 6fb9cc29dbab31e8cddef678a2c5ebfa 903 Pfam PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) 31 174 2.7E-50 T 17-10-2018 IPR019247 Histidine kinase BarA, N-terminal VI35_03325 6fb9cc29dbab31e8cddef678a2c5ebfa 903 SUPERFAMILY SSF55874 344 516 1.44E-45 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_03325 6fb9cc29dbab31e8cddef678a2c5ebfa 903 Pfam PF01627 Hpt domain 812 897 1.3E-8 T 17-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VI35_03325 6fb9cc29dbab31e8cddef678a2c5ebfa 903 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 402 518 7.4E-31 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_03325 6fb9cc29dbab31e8cddef678a2c5ebfa 903 Gene3D G3DSA:1.10.287.130 255 353 7.1E-30 T 17-10-2018 VI35_03325 6fb9cc29dbab31e8cddef678a2c5ebfa 903 SUPERFAMILY SSF47384 275 356 2.75E-22 T 17-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VI35_03325 6fb9cc29dbab31e8cddef678a2c5ebfa 903 Pfam PF00512 His Kinase A (phospho-acceptor) domain 291 355 1.3E-19 T 17-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VI35_03325 6fb9cc29dbab31e8cddef678a2c5ebfa 903 SMART SM00388 290 355 1.3E-23 T 17-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VI35_03325 6fb9cc29dbab31e8cddef678a2c5ebfa 903 PRINTS PR00344 Bacterial sensor protein C-terminal signature 444 458 3.1E-15 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_03325 6fb9cc29dbab31e8cddef678a2c5ebfa 903 PRINTS PR00344 Bacterial sensor protein C-terminal signature 479 497 3.1E-15 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_03325 6fb9cc29dbab31e8cddef678a2c5ebfa 903 PRINTS PR00344 Bacterial sensor protein C-terminal signature 503 516 3.1E-15 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_03325 6fb9cc29dbab31e8cddef678a2c5ebfa 903 PRINTS PR00344 Bacterial sensor protein C-terminal signature 462 472 3.1E-15 T 17-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VI35_03325 6fb9cc29dbab31e8cddef678a2c5ebfa 903 Pfam PF00072 Response regulator receiver domain 667 778 2.8E-26 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_03325 6fb9cc29dbab31e8cddef678a2c5ebfa 903 Gene3D G3DSA:3.40.50.2300 527 648 3.3E-6 T 17-10-2018 VI35_03325 6fb9cc29dbab31e8cddef678a2c5ebfa 903 Gene3D G3DSA:1.20.120.160 792 900 1.3E-25 T 17-10-2018 IPR036641 HPT domain superfamily GO:0000160 VI35_03325 6fb9cc29dbab31e8cddef678a2c5ebfa 903 SUPERFAMILY SSF52172 665 822 3.7E-37 T 17-10-2018 IPR011006 CheY-like superfamily VI35_10475 ace363932226688977d93a3a81533e7b 373 Gene3D G3DSA:3.40.50.1980 27 367 7.6E-93 T 17-10-2018 VI35_10475 ace363932226688977d93a3a81533e7b 373 Pfam PF01497 Periplasmic binding protein 87 313 1.7E-37 T 17-10-2018 IPR002491 ABC transporter periplasmic binding domain VI35_10475 ace363932226688977d93a3a81533e7b 373 SUPERFAMILY SSF53807 32 359 7.85E-52 T 17-10-2018 VI35_07035 4c955a9f143e11c4213167c4b143abe9 280 Gene3D G3DSA:3.40.190.10 92 254 1.2E-49 T 17-10-2018 VI35_07035 4c955a9f143e11c4213167c4b143abe9 280 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.2E-9 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_07035 4c955a9f143e11c4213167c4b143abe9 280 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.2E-9 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_07035 4c955a9f143e11c4213167c4b143abe9 280 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.2E-9 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_07035 4c955a9f143e11c4213167c4b143abe9 280 SUPERFAMILY SSF46785 2 108 5.45E-25 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_07035 4c955a9f143e11c4213167c4b143abe9 280 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 5.9E-23 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_07035 4c955a9f143e11c4213167c4b143abe9 280 Gene3D G3DSA:3.40.190.10 158 248 1.2E-49 T 17-10-2018 VI35_07035 4c955a9f143e11c4213167c4b143abe9 280 Gene3D G3DSA:1.10.10.10 1 91 5.4E-27 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_07035 4c955a9f143e11c4213167c4b143abe9 280 Pfam PF03466 LysR substrate binding domain 85 271 1.1E-31 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_07035 4c955a9f143e11c4213167c4b143abe9 280 SUPERFAMILY SSF53850 86 276 1.41E-31 T 17-10-2018 VI35_05625 c71527d82fed502f1c02e1f052fa9fa0 59 Pfam PF12065 Protein of unknown function (DUF3545) 1 54 7.4E-19 T 17-10-2018 IPR021932 Protein of unknown function DUF3545 VI35_09910 476eba848524f17b1a9d757d95c457cb 200 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 8 197 9.3E-107 T 17-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 VI35_09910 476eba848524f17b1a9d757d95c457cb 200 PRINTS PR00127 Clp protease catalytic subunit P signature 65 85 2.5E-53 T 17-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 VI35_09910 476eba848524f17b1a9d757d95c457cb 200 PRINTS PR00127 Clp protease catalytic subunit P signature 96 113 2.5E-53 T 17-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 VI35_09910 476eba848524f17b1a9d757d95c457cb 200 PRINTS PR00127 Clp protease catalytic subunit P signature 25 40 2.5E-53 T 17-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 VI35_09910 476eba848524f17b1a9d757d95c457cb 200 PRINTS PR00127 Clp protease catalytic subunit P signature 117 136 2.5E-53 T 17-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 VI35_09910 476eba848524f17b1a9d757d95c457cb 200 PRINTS PR00127 Clp protease catalytic subunit P signature 174 193 2.5E-53 T 17-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 VI35_09910 476eba848524f17b1a9d757d95c457cb 200 SUPERFAMILY SSF52096 17 198 5.47E-73 T 17-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VI35_09910 476eba848524f17b1a9d757d95c457cb 200 Pfam PF00574 Clp protease 19 198 2.8E-87 T 17-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA VI35_09910 476eba848524f17b1a9d757d95c457cb 200 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 96 107 - T 17-10-2018 IPR018215 ClpP, Ser active site VI35_09910 476eba848524f17b1a9d757d95c457cb 200 Gene3D G3DSA:3.90.226.10 2 200 6.2E-83 T 17-10-2018 VI35_09910 476eba848524f17b1a9d757d95c457cb 200 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 9 199 43.177 T 17-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 VI35_09910 476eba848524f17b1a9d757d95c457cb 200 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 118 131 - T 17-10-2018 IPR033135 ClpP, histidine active site VI35_21195 1cd199043994ad7cac512c60cb601184 300 Gene3D G3DSA:3.40.50.1980 119 290 8.4E-55 T 17-10-2018 VI35_21195 1cd199043994ad7cac512c60cb601184 300 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 80 95 1.8E-23 T 17-10-2018 VI35_21195 1cd199043994ad7cac512c60cb601184 300 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 178 193 1.8E-23 T 17-10-2018 VI35_21195 1cd199043994ad7cac512c60cb601184 300 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 202 220 1.8E-23 T 17-10-2018 VI35_21195 1cd199043994ad7cac512c60cb601184 300 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 49 67 1.8E-23 T 17-10-2018 VI35_21195 1cd199043994ad7cac512c60cb601184 300 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 267 280 1.8E-23 T 17-10-2018 VI35_21195 1cd199043994ad7cac512c60cb601184 300 Pfam PF01497 Periplasmic binding protein 32 265 1.2E-26 T 17-10-2018 IPR002491 ABC transporter periplasmic binding domain VI35_21195 1cd199043994ad7cac512c60cb601184 300 SUPERFAMILY SSF53807 31 285 2.47E-50 T 17-10-2018 VI35_21195 1cd199043994ad7cac512c60cb601184 300 Gene3D G3DSA:3.40.50.1980 26 116 1.4E-23 T 17-10-2018 VI35_06410 440f0c8748019df440219ec7606eaa91 448 Pfam PF01554 MatE 18 177 1.0E-25 T 17-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VI35_06410 440f0c8748019df440219ec7606eaa91 448 Pfam PF01554 MatE 243 403 7.1E-31 T 17-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VI35_06410 440f0c8748019df440219ec7606eaa91 448 TIGRFAM TIGR00797 matE: MATE efflux family protein 18 417 6.5E-60 T 17-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VI35_06410 440f0c8748019df440219ec7606eaa91 448 PIRSF PIRSF006603 9 448 2.7E-78 T 17-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VI35_17795 9ffddfc16438e0bb9807e51dfadaf7bb 169 PIRSF PIRSF006160 1 162 1.8E-63 T 17-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VI35_17795 9ffddfc16438e0bb9807e51dfadaf7bb 169 ProDom PD013172 LYASE SYNTHESIS LUXS AUTOINDUCER-2 PRODUCTION AUTOINDUCER S-RIBOSYLHOMOCYSTEINE AI-2 QUORUM SENSING 9 154 3.0E-68 T 17-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VI35_17795 9ffddfc16438e0bb9807e51dfadaf7bb 169 SUPERFAMILY SSF63411 4 162 1.56E-64 T 17-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 VI35_17795 9ffddfc16438e0bb9807e51dfadaf7bb 169 Pfam PF02664 S-Ribosylhomocysteinase (LuxS) 4 153 9.9E-60 T 17-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VI35_17795 9ffddfc16438e0bb9807e51dfadaf7bb 169 Hamap MF_00091 S-ribosylhomocysteine lyase [luxS]. 1 159 34.575 T 17-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VI35_17795 9ffddfc16438e0bb9807e51dfadaf7bb 169 Gene3D G3DSA:3.30.1360.80 1 169 1.1E-69 T 17-10-2018 IPR037005 S-ribosylhomocysteinase (LuxS) superfamily GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VI35_17795 9ffddfc16438e0bb9807e51dfadaf7bb 169 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 77 95 4.5E-49 T 17-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VI35_17795 9ffddfc16438e0bb9807e51dfadaf7bb 169 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 28 46 4.5E-49 T 17-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VI35_17795 9ffddfc16438e0bb9807e51dfadaf7bb 169 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 49 67 4.5E-49 T 17-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VI35_17795 9ffddfc16438e0bb9807e51dfadaf7bb 169 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 5 23 4.5E-49 T 17-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VI35_17795 9ffddfc16438e0bb9807e51dfadaf7bb 169 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 121 140 4.5E-49 T 17-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VI35_15910 33e422bbedbf7afe22e1c0a8df0f8f76 419 Gene3D G3DSA:3.50.50.60 6 288 9.6E-23 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_15910 33e422bbedbf7afe22e1c0a8df0f8f76 419 Pfam PF01593 Flavin containing amine oxidoreductase 12 270 4.5E-17 T 17-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 VI35_15910 33e422bbedbf7afe22e1c0a8df0f8f76 419 Gene3D G3DSA:1.10.3110.10 109 199 9.6E-23 T 17-10-2018 VI35_15910 33e422bbedbf7afe22e1c0a8df0f8f76 419 Gene3D G3DSA:3.90.660.20 34 289 9.6E-23 T 17-10-2018 VI35_15910 33e422bbedbf7afe22e1c0a8df0f8f76 419 SUPERFAMILY SSF51905 3 414 3.04E-49 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_18725 73aff8b9ea7156c16461a45291ca92f8 148 Pfam PF06853 Protein of unknown function (DUF1249) 29 142 3.2E-42 T 17-10-2018 IPR009659 Protein of unknown function DUF1249 VI35_02380 9bb7951acd0d02942b3abb9c52c1c219 548 SMART SM00283 286 547 4.8E-86 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_02380 9bb7951acd0d02942b3abb9c52c1c219 548 Pfam PF12729 Four helix bundle sensory module for signal transduction 5 191 5.6E-17 T 17-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain VI35_02380 9bb7951acd0d02942b3abb9c52c1c219 548 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 331 515 1.6E-40 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_02380 9bb7951acd0d02942b3abb9c52c1c219 548 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 6 31 3.4E-24 T 17-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VI35_02380 9bb7951acd0d02942b3abb9c52c1c219 548 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 384 411 3.4E-24 T 17-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VI35_02380 9bb7951acd0d02942b3abb9c52c1c219 548 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 413 442 3.4E-24 T 17-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VI35_02380 9bb7951acd0d02942b3abb9c52c1c219 548 SMART SM00304 218 271 0.002 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_02380 9bb7951acd0d02942b3abb9c52c1c219 548 Gene3D G3DSA:1.10.287.950 220 548 3.3E-71 T 17-10-2018 VI35_02380 9bb7951acd0d02942b3abb9c52c1c219 548 SUPERFAMILY SSF58104 241 548 5.49E-75 T 17-10-2018 VI35_20625 fa4464df8178f43348b092a53d35b52f 278 Pfam PF00899 ThiF family 22 263 3.4E-43 T 17-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 VI35_20625 fa4464df8178f43348b092a53d35b52f 278 SUPERFAMILY SSF69572 4 260 3.14E-67 T 17-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 VI35_20625 fa4464df8178f43348b092a53d35b52f 278 Gene3D G3DSA:3.40.50.720 1 271 1.6E-104 T 17-10-2018 VI35_02155 efc8742652f1282f405b4c431373640f 130 PIRSF PIRSF039090 3 130 5.7E-43 T 17-10-2018 IPR003713 Flagellar protein FliS GO:0044780 VI35_02155 efc8742652f1282f405b4c431373640f 130 SUPERFAMILY SSF101116 10 127 5.49E-36 T 17-10-2018 IPR036584 Flagellar protein FliS superfamily GO:0044780 VI35_02155 efc8742652f1282f405b4c431373640f 130 TIGRFAM TIGR00208 fliS: flagellar protein FliS 5 125 4.9E-24 T 17-10-2018 IPR003713 Flagellar protein FliS GO:0044780 VI35_02155 efc8742652f1282f405b4c431373640f 130 Gene3D G3DSA:1.20.120.340 2 128 6.5E-40 T 17-10-2018 VI35_02155 efc8742652f1282f405b4c431373640f 130 Pfam PF02561 Flagellar protein FliS 10 125 1.7E-35 T 17-10-2018 IPR003713 Flagellar protein FliS GO:0044780 VI35_00110 ecdade783d74e45705ab5e736456d4e0 368 Gene3D G3DSA:2.40.420.20 280 351 8.0E-76 T 17-10-2018 VI35_00110 ecdade783d74e45705ab5e736456d4e0 368 Pfam PF00529 HlyD membrane-fusion protein of T1SS 49 338 4.3E-7 T 17-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VI35_00110 ecdade783d74e45705ab5e736456d4e0 368 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 44 353 7.8E-78 T 17-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VI35_00110 ecdade783d74e45705ab5e736456d4e0 368 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 57 269 5.8E-30 T 17-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VI35_00110 ecdade783d74e45705ab5e736456d4e0 368 Gene3D G3DSA:2.40.30.170 57 279 8.0E-76 T 17-10-2018 VI35_00110 ecdade783d74e45705ab5e736456d4e0 368 Gene3D G3DSA:2.40.50.100 68 196 8.0E-76 T 17-10-2018 VI35_00110 ecdade783d74e45705ab5e736456d4e0 368 Gene3D G3DSA:1.10.287.470 103 162 8.0E-76 T 17-10-2018 VI35_00110 ecdade783d74e45705ab5e736456d4e0 368 SUPERFAMILY SSF111369 57 273 3.66E-41 T 17-10-2018 VI35_03600 919732af77bfeb0909d982a2ff896cb2 456 Pfam PF02875 Mur ligase family, glutamate ligase domain 313 360 1.7E-8 T 17-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 VI35_03600 919732af77bfeb0909d982a2ff896cb2 456 Gene3D G3DSA:3.90.190.20 315 451 1.1E-31 T 17-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 VI35_03600 919732af77bfeb0909d982a2ff896cb2 456 SUPERFAMILY SSF53623 94 310 1.7E-49 T 17-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 VI35_03600 919732af77bfeb0909d982a2ff896cb2 456 SUPERFAMILY SSF51984 1 90 5.76E-25 T 17-10-2018 VI35_03600 919732af77bfeb0909d982a2ff896cb2 456 TIGRFAM TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 2 450 2.8E-233 T 17-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 VI35_03600 919732af77bfeb0909d982a2ff896cb2 456 Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. 1 450 60.116 T 17-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 VI35_03600 919732af77bfeb0909d982a2ff896cb2 456 Pfam PF01225 Mur ligase family, catalytic domain 2 99 3.0E-19 T 17-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 VI35_03600 919732af77bfeb0909d982a2ff896cb2 456 Pfam PF08245 Mur ligase middle domain 108 292 7.6E-20 T 17-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 VI35_03600 919732af77bfeb0909d982a2ff896cb2 456 SUPERFAMILY SSF53244 312 448 5.95E-39 T 17-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 VI35_03600 919732af77bfeb0909d982a2ff896cb2 456 Gene3D G3DSA:3.40.50.720 1 90 1.0E-37 T 17-10-2018 VI35_03600 919732af77bfeb0909d982a2ff896cb2 456 Gene3D G3DSA:3.40.1190.10 93 311 9.8E-52 T 17-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 VI35_07900 be7325da13458f1fb4dd53a0ede35f2a 55 Pfam PF10746 Phage holin T7 family, holin superfamily II 3 46 2.6E-11 T 17-10-2018 IPR019682 Bacteriophage T7, Gp17.5, holin GO:0019076|GO:0019835 VI35_20535 598f15fd2954b01e72d462871ba75bfd 147 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 51 67 - T 17-10-2018 IPR002178 PTS EIIA type-2 domain VI35_20535 598f15fd2954b01e72d462871ba75bfd 147 Gene3D G3DSA:3.40.930.10 1 147 6.1E-55 T 17-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VI35_20535 598f15fd2954b01e72d462871ba75bfd 147 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 145 2.6E-35 T 17-10-2018 IPR002178 PTS EIIA type-2 domain VI35_20535 598f15fd2954b01e72d462871ba75bfd 147 SUPERFAMILY SSF55804 1 145 1.31E-40 T 17-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VI35_20500 3a65e9781385d09018b7c21946a97de4 287 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 66 88 - T 17-10-2018 IPR030470 UbiA prenyltransferase conserved site VI35_20500 3a65e9781385d09018b7c21946a97de4 287 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 4 287 30.021 T 17-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 VI35_20500 3a65e9781385d09018b7c21946a97de4 287 Pfam PF01040 UbiA prenyltransferase family 27 269 1.1E-66 T 17-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 VI35_20500 3a65e9781385d09018b7c21946a97de4 287 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 11 287 6.5E-106 T 17-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 VI35_20500 3a65e9781385d09018b7c21946a97de4 287 Gene3D G3DSA:1.10.357.140 22 167 1.7E-40 T 17-10-2018 VI35_20500 3a65e9781385d09018b7c21946a97de4 287 Gene3D G3DSA:1.20.120.1780 168 287 1.0E-15 T 17-10-2018 VI35_04635 b5449db16520530155e37b016db0de98 614 SUPERFAMILY SSF52096 315 527 1.27E-41 T 17-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VI35_04635 b5449db16520530155e37b016db0de98 614 Gene3D G3DSA:3.40.1750.10 184 496 8.0E-159 T 17-10-2018 VI35_04635 b5449db16520530155e37b016db0de98 614 Pfam PF01343 Peptidase family S49 136 289 3.4E-33 T 17-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 VI35_04635 b5449db16520530155e37b016db0de98 614 Pfam PF01343 Peptidase family S49 390 541 1.2E-44 T 17-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 VI35_04635 b5449db16520530155e37b016db0de98 614 SUPERFAMILY SSF52096 32 284 1.95E-24 T 17-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VI35_04635 b5449db16520530155e37b016db0de98 614 Gene3D G3DSA:3.90.226.10 92 312 8.0E-159 T 17-10-2018 VI35_04635 b5449db16520530155e37b016db0de98 614 PIRSF PIRSF001217 8 614 1.1E-200 T 17-10-2018 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 VI35_04635 b5449db16520530155e37b016db0de98 614 Gene3D G3DSA:3.90.226.10 313 539 8.0E-159 T 17-10-2018 VI35_04635 b5449db16520530155e37b016db0de98 614 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 346 538 3.0E-51 T 17-10-2018 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 VI35_04635 b5449db16520530155e37b016db0de98 614 TIGRFAM TIGR00705 SppA_67K: signal peptide peptidase SppA, 67K type 15 607 4.2E-186 T 17-10-2018 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 VI35_11510 b7493ad0e11c6d0913638724c8446657 251 Pfam PF04250 Protein of unknown function (DUF429) 14 230 1.1E-9 T 17-10-2018 IPR007362 Protein of unknown function DUF429 VI35_08710 4696ade8977b1e45899305db52463e78 312 Gene3D G3DSA:3.40.50.1980 134 306 1.1E-41 T 17-10-2018 VI35_08710 4696ade8977b1e45899305db52463e78 312 Gene3D G3DSA:3.40.50.1980 20 130 3.5E-23 T 17-10-2018 VI35_08710 4696ade8977b1e45899305db52463e78 312 SUPERFAMILY SSF53807 26 298 2.55E-51 T 17-10-2018 VI35_08710 4696ade8977b1e45899305db52463e78 312 Pfam PF01497 Periplasmic binding protein 69 274 1.9E-19 T 17-10-2018 IPR002491 ABC transporter periplasmic binding domain VI35_02425 cf0d7b486a10e13cefbd8f707544bfef 462 Pfam PF07690 Major Facilitator Superfamily 21 410 2.8E-49 T 17-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VI35_02425 cf0d7b486a10e13cefbd8f707544bfef 462 Gene3D G3DSA:1.20.1250.20 263 460 5.9E-16 T 17-10-2018 VI35_02425 cf0d7b486a10e13cefbd8f707544bfef 462 SUPERFAMILY SSF103473 8 462 1.1E-65 T 17-10-2018 IPR036259 MFS transporter superfamily VI35_02425 cf0d7b486a10e13cefbd8f707544bfef 462 Gene3D G3DSA:1.20.1250.20 12 203 2.5E-39 T 17-10-2018 VI35_02425 cf0d7b486a10e13cefbd8f707544bfef 462 PRINTS PR01036 Tetracycline resistance protein TetB signature 204 222 1.8E-10 T 17-10-2018 VI35_02425 cf0d7b486a10e13cefbd8f707544bfef 462 PRINTS PR01036 Tetracycline resistance protein TetB signature 110 130 1.8E-10 T 17-10-2018 VI35_02425 cf0d7b486a10e13cefbd8f707544bfef 462 PRINTS PR01036 Tetracycline resistance protein TetB signature 140 164 1.8E-10 T 17-10-2018 VI35_02425 cf0d7b486a10e13cefbd8f707544bfef 462 PRINTS PR01036 Tetracycline resistance protein TetB signature 19 43 1.8E-10 T 17-10-2018 VI35_02425 cf0d7b486a10e13cefbd8f707544bfef 462 PRINTS PR01036 Tetracycline resistance protein TetB signature 401 420 1.8E-10 T 17-10-2018 VI35_02425 cf0d7b486a10e13cefbd8f707544bfef 462 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 21 417 9.3E-75 T 17-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 VI35_06225 7bdd38da5c957231a6cb93c2efe45e65 112 Gene3D G3DSA:3.30.1450.10 29 107 1.3E-27 T 17-10-2018 IPR037873 BamE-like VI35_06225 7bdd38da5c957231a6cb93c2efe45e65 112 Hamap MF_00925 Outer membrane protein assembly factor BamE [bamE]. 6 106 31.094 T 17-10-2018 IPR026592 Outer membrane protein assembly factor BamE VI35_06225 7bdd38da5c957231a6cb93c2efe45e65 112 Pfam PF04355 SmpA / OmlA family 30 98 7.0E-28 T 17-10-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 VI35_15740 b4c29e87d4b1a946a41096d973f44859 102 PIRSF PIRSF003113 1 97 1.9E-35 T 17-10-2018 IPR002634 BolA protein VI35_15740 b4c29e87d4b1a946a41096d973f44859 102 SUPERFAMILY SSF82657 2 86 2.75E-30 T 17-10-2018 IPR036065 BolA-like superfamily VI35_15740 b4c29e87d4b1a946a41096d973f44859 102 Gene3D G3DSA:3.30.300.90 1 88 1.2E-34 T 17-10-2018 VI35_15740 b4c29e87d4b1a946a41096d973f44859 102 Pfam PF01722 BolA-like protein 9 82 6.3E-30 T 17-10-2018 IPR002634 BolA protein VI35_10620 7ae290676c897c143c17faf420533307 125 Pfam PF04304 Protein of unknown function (DUF454) 3 116 9.2E-39 T 17-10-2018 IPR007401 Protein of unknown function DUF454 VI35_10620 7ae290676c897c143c17faf420533307 125 PIRSF PIRSF016789 2 123 5.2E-41 T 17-10-2018 IPR007401 Protein of unknown function DUF454 VI35_18115 2e5bc06bdea24097f22e26d892121b0e 99 Hamap MF_00634 UPF0235 protein YggU [yggU]. 7 95 20.064 T 17-10-2018 IPR003746 Protein of unknown function DUF167 VI35_18115 2e5bc06bdea24097f22e26d892121b0e 99 TIGRFAM TIGR00251 TIGR00251: TIGR00251 family protein 7 91 6.6E-26 T 17-10-2018 IPR005228 Conserved hypothetical protein CHP00251 VI35_18115 2e5bc06bdea24097f22e26d892121b0e 99 SUPERFAMILY SSF69786 2 96 1.96E-31 T 17-10-2018 IPR036591 YggU-like superfamily VI35_18115 2e5bc06bdea24097f22e26d892121b0e 99 Pfam PF02594 Uncharacterised ACR, YggU family COG1872 11 81 6.6E-25 T 17-10-2018 IPR003746 Protein of unknown function DUF167 VI35_18115 2e5bc06bdea24097f22e26d892121b0e 99 SMART SM01152 7 83 3.0E-36 T 17-10-2018 IPR003746 Protein of unknown function DUF167 VI35_18115 2e5bc06bdea24097f22e26d892121b0e 99 Gene3D G3DSA:3.30.1200.10 1 99 1.4E-34 T 17-10-2018 IPR036591 YggU-like superfamily VI35_01935 0560c78697941443cf4c977c58f253ec 405 SUPERFAMILY SSF81648 201 371 2.88E-47 T 17-10-2018 IPR036150 Cytochrome b/b6, C-terminal domain superfamily GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 VI35_01935 0560c78697941443cf4c977c58f253ec 405 PIRSF PIRSF038885 1 405 6.7E-159 T 17-10-2018 IPR030689 Cytochrome b GO:0006122|GO:0008121|GO:0009055|GO:0045275 Reactome: R-HSA-611105 VI35_01935 0560c78697941443cf4c977c58f253ec 405 SUPERFAMILY SSF81342 7 269 1.88E-96 T 17-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 VI35_01935 0560c78697941443cf4c977c58f253ec 405 Gene3D G3DSA:1.20.810.10 2 405 2.4E-153 T 17-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 VI35_01935 0560c78697941443cf4c977c58f253ec 405 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 279 380 2.6E-41 T 17-10-2018 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 VI35_01935 0560c78697941443cf4c977c58f253ec 405 Pfam PF00033 Cytochrome b/b6/petB 25 212 2.2E-67 T 17-10-2018 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 VI35_17995 294e1d404f7203f732865120ba4e794a 220 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 23 214 5.8E-12 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_17995 294e1d404f7203f732865120ba4e794a 220 Gene3D G3DSA:1.10.3720.10 1 216 9.8E-39 T 17-10-2018 IPR035906 MetI-like superfamily VI35_17995 294e1d404f7203f732865120ba4e794a 220 SUPERFAMILY SSF161098 8 201 3.79E-27 T 17-10-2018 IPR035906 MetI-like superfamily VI35_17995 294e1d404f7203f732865120ba4e794a 220 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 6 110 1.0E-13 T 17-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 VI35_15935 1cb686998218a30d4ab85ffab2d834bb 314 Pfam PF08349 Protein of unknown function (DUF1722) 189 305 3.5E-45 T 17-10-2018 IPR013560 Domain of unknown function DUF1722 VI35_15935 1cb686998218a30d4ab85ffab2d834bb 314 PIRSF PIRSF037004 1 314 4.1E-130 T 17-10-2018 IPR017087 Uncharacterised conserved protein UCP037004 VI35_15935 1cb686998218a30d4ab85ffab2d834bb 314 Pfam PF04463 Protein of unknown function (DUF523) 6 146 1.9E-37 T 17-10-2018 IPR007553 Domain of unknown function DUF523 VI35_04150 8ea9545a31a10e4e6dc79ff6db2a4e08 319 Pfam PF02706 Chain length determinant protein 20 121 5.8E-15 T 17-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 VI35_04150 8ea9545a31a10e4e6dc79ff6db2a4e08 319 Pfam PF13807 G-rich domain on putative tyrosine kinase 246 311 4.1E-11 T 17-10-2018 IPR032807 Tyrosine kinase, G-rich domain VI35_09760 1299ecbeb5d46bb4b8dd8d2d2ddd6b4a 489 Pfam PF04055 Radical SAM superfamily 54 218 5.4E-12 T 17-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VI35_09760 1299ecbeb5d46bb4b8dd8d2d2ddd6b4a 489 Gene3D G3DSA:3.80.30.20 19 343 2.6E-67 T 17-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe VI35_09760 1299ecbeb5d46bb4b8dd8d2d2ddd6b4a 489 TIGRFAM TIGR04107 rSAM_HutW: putative heme utilization radical SAM enzyme HutW 12 424 1.9E-158 T 17-10-2018 IPR026332 Putative heme utilization radical SAM enzyme HutW VI35_09760 1299ecbeb5d46bb4b8dd8d2d2ddd6b4a 489 SMART SM00729 49 271 3.5E-35 T 17-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 VI35_09760 1299ecbeb5d46bb4b8dd8d2d2ddd6b4a 489 SUPERFAMILY SSF102114 47 424 9.16E-71 T 17-10-2018 VI35_20930 169e241a0a47e754101981ada08ab368 108 PIRSF PIRSF000077 2 108 2.0E-44 T 17-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 VI35_20930 169e241a0a47e754101981ada08ab368 108 SUPERFAMILY SSF52833 2 107 2.36E-40 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_20930 169e241a0a47e754101981ada08ab368 108 ProSitePatterns PS00194 Thioredoxin family active site. 25 43 - T 17-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 VI35_20930 169e241a0a47e754101981ada08ab368 108 TIGRFAM TIGR01068 thioredoxin: thioredoxin 9 106 1.6E-39 T 17-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 VI35_20930 169e241a0a47e754101981ada08ab368 108 PRINTS PR00421 Thioredoxin family signature 24 32 3.3E-10 T 17-10-2018 VI35_20930 169e241a0a47e754101981ada08ab368 108 PRINTS PR00421 Thioredoxin family signature 72 83 3.3E-10 T 17-10-2018 VI35_20930 169e241a0a47e754101981ada08ab368 108 PRINTS PR00421 Thioredoxin family signature 32 41 3.3E-10 T 17-10-2018 VI35_20930 169e241a0a47e754101981ada08ab368 108 Pfam PF00085 Thioredoxin 5 105 6.9E-35 T 17-10-2018 IPR013766 Thioredoxin domain GO:0045454 VI35_20930 169e241a0a47e754101981ada08ab368 108 Gene3D G3DSA:3.40.30.10 1 107 4.7E-37 T 17-10-2018 VI35_05370 2f4dd8c5a9e07c7b52754aee36b9e731 198 Gene3D G3DSA:1.10.287.540 57 93 1.7E-8 T 17-10-2018 VI35_05370 2f4dd8c5a9e07c7b52754aee36b9e731 198 PIRSF PIRSF016482 1 197 1.6E-52 T 17-10-2018 IPR007445 Pilus assembly protein, PilO VI35_05370 2f4dd8c5a9e07c7b52754aee36b9e731 198 Gene3D G3DSA:3.30.70.60 94 197 5.2E-30 T 17-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 VI35_05370 2f4dd8c5a9e07c7b52754aee36b9e731 198 Pfam PF04350 Pilus assembly protein, PilO 50 190 2.0E-47 T 17-10-2018 IPR007445 Pilus assembly protein, PilO VI35_16200 bc2ed447aaec4fae3f226002d31019f9 203 SUPERFAMILY SSF52172 10 152 6.55E-30 T 17-10-2018 IPR011006 CheY-like superfamily VI35_16200 bc2ed447aaec4fae3f226002d31019f9 203 Gene3D G3DSA:3.40.50.2300 4 134 1.1E-33 T 17-10-2018 VI35_16200 bc2ed447aaec4fae3f226002d31019f9 203 SMART SM00421 139 196 6.3E-18 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_16200 bc2ed447aaec4fae3f226002d31019f9 203 Pfam PF00072 Response regulator receiver domain 11 120 1.7E-23 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_16200 bc2ed447aaec4fae3f226002d31019f9 203 SUPERFAMILY SSF46894 129 198 3.13E-18 T 17-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VI35_16200 bc2ed447aaec4fae3f226002d31019f9 203 Pfam PF00196 Bacterial regulatory proteins, luxR family 141 192 2.5E-16 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_16200 bc2ed447aaec4fae3f226002d31019f9 203 ProSitePatterns PS00622 LuxR-type HTH domain signature. 156 183 - T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_16200 bc2ed447aaec4fae3f226002d31019f9 203 SMART SM00448 7 119 1.1E-26 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_16200 bc2ed447aaec4fae3f226002d31019f9 203 Gene3D G3DSA:1.10.10.10 135 198 1.0E-18 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_16200 bc2ed447aaec4fae3f226002d31019f9 203 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 142 156 3.0E-10 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_16200 bc2ed447aaec4fae3f226002d31019f9 203 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 172 184 3.0E-10 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_16200 bc2ed447aaec4fae3f226002d31019f9 203 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 172 3.0E-10 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_15060 86b576d79f29de4526b5a2bc0b67a75f 564 Hamap MF_01619 NAD-dependent malic enzyme [maeA]. 4 564 70.751 T 17-10-2018 IPR023667 NAD-dependent malic enzyme, proteobacteria GO:0004471|GO:0055114 KEGG: 00620+1.1.1.38|MetaCyc: PWY-6339 VI35_15060 86b576d79f29de4526b5a2bc0b67a75f 564 SUPERFAMILY SSF53223 7 270 5.9E-112 T 17-10-2018 VI35_15060 86b576d79f29de4526b5a2bc0b67a75f 564 PRINTS PR00072 Malic enzyme signature 298 314 2.5E-74 T 17-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VI35_15060 86b576d79f29de4526b5a2bc0b67a75f 564 PRINTS PR00072 Malic enzyme signature 242 260 2.5E-74 T 17-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VI35_15060 86b576d79f29de4526b5a2bc0b67a75f 564 PRINTS PR00072 Malic enzyme signature 87 111 2.5E-74 T 17-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VI35_15060 86b576d79f29de4526b5a2bc0b67a75f 564 PRINTS PR00072 Malic enzyme signature 407 423 2.5E-74 T 17-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VI35_15060 86b576d79f29de4526b5a2bc0b67a75f 564 PRINTS PR00072 Malic enzyme signature 147 176 2.5E-74 T 17-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VI35_15060 86b576d79f29de4526b5a2bc0b67a75f 564 PRINTS PR00072 Malic enzyme signature 267 283 2.5E-74 T 17-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VI35_15060 86b576d79f29de4526b5a2bc0b67a75f 564 PRINTS PR00072 Malic enzyme signature 183 205 2.5E-74 T 17-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VI35_15060 86b576d79f29de4526b5a2bc0b67a75f 564 PIRSF PIRSF000106 2 562 5.8E-229 T 17-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VI35_15060 86b576d79f29de4526b5a2bc0b67a75f 564 ProSitePatterns PS00331 Malic enzymes signature. 267 283 - T 17-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 VI35_15060 86b576d79f29de4526b5a2bc0b67a75f 564 Gene3D G3DSA:3.40.50.10380 17 268 7.1E-117 T 17-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 VI35_15060 86b576d79f29de4526b5a2bc0b67a75f 564 SUPERFAMILY SSF51735 271 561 1.34E-92 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_15060 86b576d79f29de4526b5a2bc0b67a75f 564 SMART SM00919 271 530 9.8E-133 T 17-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 VI35_15060 86b576d79f29de4526b5a2bc0b67a75f 564 Pfam PF03949 Malic enzyme, NAD binding domain 271 529 2.7E-98 T 17-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 VI35_15060 86b576d79f29de4526b5a2bc0b67a75f 564 SMART SM01274 81 261 6.1E-110 T 17-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 VI35_15060 86b576d79f29de4526b5a2bc0b67a75f 564 Gene3D G3DSA:3.40.50.720 269 564 6.4E-107 T 17-10-2018 VI35_15060 86b576d79f29de4526b5a2bc0b67a75f 564 Pfam PF00390 Malic enzyme, N-terminal domain 81 261 2.7E-79 T 17-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 VI35_11860 1c3039c985590335887c9c13e2a72423 311 Gene3D G3DSA:1.10.10.10 17 106 2.7E-23 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_11860 1c3039c985590335887c9c13e2a72423 311 SUPERFAMILY SSF46785 13 127 9.62E-22 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_11860 1c3039c985590335887c9c13e2a72423 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 19 78 3.1E-17 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_11860 1c3039c985590335887c9c13e2a72423 311 Gene3D G3DSA:3.40.190.10 107 305 6.1E-63 T 17-10-2018 VI35_11860 1c3039c985590335887c9c13e2a72423 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 45 6.2E-7 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_11860 1c3039c985590335887c9c13e2a72423 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 55 6.2E-7 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_11860 1c3039c985590335887c9c13e2a72423 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 55 66 6.2E-7 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_11860 1c3039c985590335887c9c13e2a72423 311 Pfam PF03466 LysR substrate binding domain 103 308 1.0E-39 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_11860 1c3039c985590335887c9c13e2a72423 311 SUPERFAMILY SSF53850 104 309 1.78E-39 T 17-10-2018 VI35_11860 1c3039c985590335887c9c13e2a72423 311 Gene3D G3DSA:3.40.190.10 178 282 6.1E-63 T 17-10-2018 VI35_02530 0f49d3f76da8346e2f5dbced679ebc8f 352 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 108 118 - T 17-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 VI35_02530 0f49d3f76da8346e2f5dbced679ebc8f 352 PIRSF PIRSF500176 24 352 1.5E-82 T 17-10-2018 VI35_02530 0f49d3f76da8346e2f5dbced679ebc8f 352 Gene3D G3DSA:3.40.50.40 239 352 4.5E-41 T 17-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 VI35_02530 0f49d3f76da8346e2f5dbced679ebc8f 352 Gene3D G3DSA:3.40.50.1170 23 238 6.0E-88 T 17-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 VI35_02530 0f49d3f76da8346e2f5dbced679ebc8f 352 TIGRFAM TIGR00520 asnASE_II: L-asparaginase, type II 9 352 1.8E-158 T 17-10-2018 IPR004550 L-asparaginase, type II GO:0004067|GO:0006528 VI35_02530 0f49d3f76da8346e2f5dbced679ebc8f 352 Pfam PF00710 Asparaginase, N-terminal 28 220 3.9E-64 T 17-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 VI35_02530 0f49d3f76da8346e2f5dbced679ebc8f 352 SUPERFAMILY SSF53774 26 351 3.14E-108 T 17-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 VI35_02530 0f49d3f76da8346e2f5dbced679ebc8f 352 SMART SM00870 27 346 1.3E-148 T 17-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 VI35_02530 0f49d3f76da8346e2f5dbced679ebc8f 352 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 30 38 - T 17-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 VI35_02530 0f49d3f76da8346e2f5dbced679ebc8f 352 PIRSF PIRSF001220 22 352 1.2E-94 T 17-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 VI35_02530 0f49d3f76da8346e2f5dbced679ebc8f 352 PRINTS PR00139 Asparaginase/glutaminase family signature 107 125 3.5E-22 T 17-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 VI35_02530 0f49d3f76da8346e2f5dbced679ebc8f 352 PRINTS PR00139 Asparaginase/glutaminase family signature 28 39 3.5E-22 T 17-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 VI35_02530 0f49d3f76da8346e2f5dbced679ebc8f 352 PRINTS PR00139 Asparaginase/glutaminase family signature 286 304 3.5E-22 T 17-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 VI35_05125 a428cd8dd5f046bd703cd4a0af31cfe6 477 SMART SM00729 147 367 8.1E-63 T 17-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 VI35_05125 a428cd8dd5f046bd703cd4a0af31cfe6 477 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 4 437 3.0E-153 T 17-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 VI35_05125 a428cd8dd5f046bd703cd4a0af31cfe6 477 SUPERFAMILY SSF102114 129 371 5.76E-63 T 17-10-2018 VI35_05125 a428cd8dd5f046bd703cd4a0af31cfe6 477 Gene3D G3DSA:3.40.50.12160 3 135 1.0E-34 T 17-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily VI35_05125 a428cd8dd5f046bd703cd4a0af31cfe6 477 Pfam PF04055 Radical SAM superfamily 151 325 4.1E-27 T 17-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VI35_05125 a428cd8dd5f046bd703cd4a0af31cfe6 477 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 151 171 - T 17-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 VI35_05125 a428cd8dd5f046bd703cd4a0af31cfe6 477 Pfam PF01938 TRAM domain 378 439 1.6E-16 T 17-10-2018 IPR002792 TRAM domain VI35_05125 a428cd8dd5f046bd703cd4a0af31cfe6 477 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 4 439 4.3E-198 T 17-10-2018 VI35_05125 a428cd8dd5f046bd703cd4a0af31cfe6 477 Pfam PF00919 Uncharacterized protein family UPF0004 4 104 1.5E-30 T 17-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 VI35_05125 a428cd8dd5f046bd703cd4a0af31cfe6 477 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 3 440 74.166 T 17-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 VI35_05125 a428cd8dd5f046bd703cd4a0af31cfe6 477 Gene3D G3DSA:3.80.30.20 145 375 4.1E-83 T 17-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe VI35_04515 987d4baf2175e393dc809b71b7034777 241 Pfam PF00194 Eukaryotic-type carbonic anhydrase 22 240 8.4E-50 T 17-10-2018 IPR001148 Alpha carbonic anhydrase domain VI35_04515 987d4baf2175e393dc809b71b7034777 241 ProSitePatterns PS00162 Alpha-carbonic anhydrases signature. 111 127 - T 17-10-2018 IPR018338 Carbonic anhydrase, alpha-class, conserved site GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117|Reactome: R-HSA-1475029 VI35_04515 987d4baf2175e393dc809b71b7034777 241 SMART SM01057 23 240 1.2E-100 T 17-10-2018 IPR001148 Alpha carbonic anhydrase domain VI35_04515 987d4baf2175e393dc809b71b7034777 241 Gene3D G3DSA:3.10.200.10 15 241 9.0E-79 T 17-10-2018 IPR036398 Alpha carbonic anhydrase domain superfamily VI35_04515 987d4baf2175e393dc809b71b7034777 241 SUPERFAMILY SSF51069 21 240 2.49E-74 T 17-10-2018 IPR036398 Alpha carbonic anhydrase domain superfamily VI35_19885 ed2bc6938daeba895127f7e23cfd7a5f 201 Pfam PF00573 Ribosomal protein L4/L1 family 13 198 9.4E-66 T 17-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 VI35_19885 ed2bc6938daeba895127f7e23cfd7a5f 201 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 13 198 1.5E-76 T 17-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_19885 ed2bc6938daeba895127f7e23cfd7a5f 201 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 6 201 34.196 T 17-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_19885 ed2bc6938daeba895127f7e23cfd7a5f 201 Gene3D G3DSA:3.40.1370.10 2 201 1.2E-70 T 17-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 VI35_19885 ed2bc6938daeba895127f7e23cfd7a5f 201 SUPERFAMILY SSF52166 10 200 1.2E-73 T 17-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 VI35_04525 0b7cca04679d4c19f1a53fe30c80ec3b 115 Pfam PF10807 Protein of unknown function (DUF2541) 6 112 7.6E-8 T 17-10-2018 IPR020240 Uncharacterised protein family UPF0412, YaaI VI35_21185 60120e32c3d0fb6ea8b5a0fbdac8d746 548 Gene3D G3DSA:1.20.1560.10 1 310 7.9E-24 T 17-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VI35_21185 60120e32c3d0fb6ea8b5a0fbdac8d746 548 SMART SM00382 349 522 1.8E-14 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_21185 60120e32c3d0fb6ea8b5a0fbdac8d746 548 SUPERFAMILY SSF90123 5 299 1.06E-28 T 17-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VI35_21185 60120e32c3d0fb6ea8b5a0fbdac8d746 548 TIGRFAM TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter 2 523 6.4E-110 T 17-10-2018 IPR005898 Cyclic peptide transporter GO:0005524|GO:0015833|GO:0016021|GO:1904680 VI35_21185 60120e32c3d0fb6ea8b5a0fbdac8d746 548 Gene3D G3DSA:3.40.50.300 320 543 3.8E-39 T 17-10-2018 VI35_21185 60120e32c3d0fb6ea8b5a0fbdac8d746 548 ProSitePatterns PS00211 ABC transporters family signature. 446 460 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_21185 60120e32c3d0fb6ea8b5a0fbdac8d746 548 SUPERFAMILY SSF52540 319 526 7.44E-41 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_21185 60120e32c3d0fb6ea8b5a0fbdac8d746 548 Pfam PF00005 ABC transporter 343 473 1.9E-22 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_05885 d31c56afbbbc40abcfc3e1f0f5b3d345 353 PRINTS PR00954 Flagellar motor switch protein FliG signature 25 41 2.0E-56 T 17-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VI35_05885 d31c56afbbbc40abcfc3e1f0f5b3d345 353 PRINTS PR00954 Flagellar motor switch protein FliG signature 268 288 2.0E-56 T 17-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VI35_05885 d31c56afbbbc40abcfc3e1f0f5b3d345 353 PRINTS PR00954 Flagellar motor switch protein FliG signature 246 266 2.0E-56 T 17-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VI35_05885 d31c56afbbbc40abcfc3e1f0f5b3d345 353 PRINTS PR00954 Flagellar motor switch protein FliG signature 54 80 2.0E-56 T 17-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VI35_05885 d31c56afbbbc40abcfc3e1f0f5b3d345 353 PRINTS PR00954 Flagellar motor switch protein FliG signature 134 157 2.0E-56 T 17-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VI35_05885 d31c56afbbbc40abcfc3e1f0f5b3d345 353 PRINTS PR00954 Flagellar motor switch protein FliG signature 215 240 2.0E-56 T 17-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VI35_05885 d31c56afbbbc40abcfc3e1f0f5b3d345 353 PRINTS PR00954 Flagellar motor switch protein FliG signature 292 318 2.0E-56 T 17-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VI35_05885 d31c56afbbbc40abcfc3e1f0f5b3d345 353 Pfam PF01706 FliG C-terminal domain 238 344 4.4E-41 T 17-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal VI35_05885 d31c56afbbbc40abcfc3e1f0f5b3d345 353 SUPERFAMILY SSF48029 134 344 2.75E-69 T 17-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical VI35_05885 d31c56afbbbc40abcfc3e1f0f5b3d345 353 Pfam PF14841 FliG middle domain 136 206 3.7E-27 T 17-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain VI35_05885 d31c56afbbbc40abcfc3e1f0f5b3d345 353 SUPERFAMILY SSF48029 24 135 3.66E-21 T 17-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical VI35_05885 d31c56afbbbc40abcfc3e1f0f5b3d345 353 Gene3D G3DSA:1.10.220.30 22 103 3.7E-16 T 17-10-2018 VI35_05885 d31c56afbbbc40abcfc3e1f0f5b3d345 353 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 22 351 1.5E-96 T 17-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VI35_05885 d31c56afbbbc40abcfc3e1f0f5b3d345 353 PIRSF PIRSF003161 21 353 7.3E-116 T 17-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VI35_05885 d31c56afbbbc40abcfc3e1f0f5b3d345 353 Gene3D G3DSA:1.10.220.30 215 353 5.6E-43 T 17-10-2018 VI35_05885 d31c56afbbbc40abcfc3e1f0f5b3d345 353 Gene3D G3DSA:1.10.220.30 109 213 7.9E-30 T 17-10-2018 VI35_05885 d31c56afbbbc40abcfc3e1f0f5b3d345 353 Pfam PF14842 FliG N-terminal domain 25 124 1.0E-27 T 17-10-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain VI35_08695 30afd40aeae3b1eacd338a412b722121 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 72 83 5.3E-11 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_08695 30afd40aeae3b1eacd338a412b722121 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 133 5.3E-11 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_08695 30afd40aeae3b1eacd338a412b722121 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 164 5.3E-11 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_08695 30afd40aeae3b1eacd338a412b722121 249 TIGRFAM TIGR04316 dhbA_paeA: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase 10 247 3.1E-100 T 17-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 VI35_08695 30afd40aeae3b1eacd338a412b722121 249 SUPERFAMILY SSF51735 1 247 1.06E-68 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_08695 30afd40aeae3b1eacd338a412b722121 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 246 1.8E-50 T 17-10-2018 VI35_08695 30afd40aeae3b1eacd338a412b722121 249 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 160 183 8.8E-53 T 17-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 VI35_08695 30afd40aeae3b1eacd338a412b722121 249 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 95 115 8.8E-53 T 17-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 VI35_08695 30afd40aeae3b1eacd338a412b722121 249 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 14 31 8.8E-53 T 17-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 VI35_08695 30afd40aeae3b1eacd338a412b722121 249 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 75 92 8.8E-53 T 17-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 VI35_08695 30afd40aeae3b1eacd338a412b722121 249 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 225 244 8.8E-53 T 17-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 VI35_08695 30afd40aeae3b1eacd338a412b722121 249 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 199 218 8.8E-53 T 17-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 VI35_08695 30afd40aeae3b1eacd338a412b722121 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 132 160 - T 17-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 VI35_08695 30afd40aeae3b1eacd338a412b722121 249 Gene3D G3DSA:3.40.50.720 1 248 1.9E-70 T 17-10-2018 VI35_08695 30afd40aeae3b1eacd338a412b722121 249 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 176 0.0041 T 17-10-2018 VI35_04975 5f273b06cdba1d92837d5eb75552778e 299 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 10 92 4.4E-23 T 17-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 VI35_04975 5f273b06cdba1d92837d5eb75552778e 299 SUPERFAMILY SSF56349 108 297 5.3E-58 T 17-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VI35_04975 5f273b06cdba1d92837d5eb75552778e 299 Gene3D G3DSA:1.10.443.10 113 292 1.2E-72 T 17-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VI35_04975 5f273b06cdba1d92837d5eb75552778e 299 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 8 299 58.688 T 17-10-2018 IPR023009 Tyrosine recombinase XerC/XerD VI35_04975 5f273b06cdba1d92837d5eb75552778e 299 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 6 299 64.814 T 17-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 VI35_04975 5f273b06cdba1d92837d5eb75552778e 299 SUPERFAMILY SSF47823 6 102 8.04E-37 T 17-10-2018 VI35_04975 5f273b06cdba1d92837d5eb75552778e 299 Pfam PF00589 Phage integrase family 115 285 5.0E-54 T 17-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VI35_04975 5f273b06cdba1d92837d5eb75552778e 299 Gene3D G3DSA:1.10.150.130 7 100 3.8E-23 T 17-10-2018 IPR010998 Integrase/recombinase, N-terminal VI35_04975 5f273b06cdba1d92837d5eb75552778e 299 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 12 299 2.8E-119 T 17-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 VI35_12185 8dfd87ef8d2aa4a7abe1d1932f9b6470 134 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 24 121 1.0E-33 T 17-10-2018 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12185 8dfd87ef8d2aa4a7abe1d1932f9b6470 134 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 5 122 20.427 T 17-10-2018 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 VI35_12185 8dfd87ef8d2aa4a7abe1d1932f9b6470 134 Gene3D G3DSA:1.20.58.1610 1 122 2.2E-41 T 17-10-2018 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_09310 cdba1e268607f0100620b7205b0b0429 237 SUPERFAMILY SSF53474 39 234 2.05E-20 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_09310 cdba1e268607f0100620b7205b0b0429 237 Pfam PF06057 Bacterial virulence protein (VirJ) 47 229 3.1E-58 T 17-10-2018 IPR010333 Bacterial virulence VI35_09310 cdba1e268607f0100620b7205b0b0429 237 PIRSF PIRSF029063 15 237 3.1E-66 T 17-10-2018 IPR011225 Type IV secretory pathway, VirJ component VI35_09310 cdba1e268607f0100620b7205b0b0429 237 Gene3D G3DSA:3.40.50.1820 29 234 4.8E-12 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_18790 4ef18d89ce37ffa299892c41e8c630f8 173 SUPERFAMILY SSF158668 1 168 9.02E-57 T 17-10-2018 IPR038026 MtlR-like superfamily VI35_18790 4ef18d89ce37ffa299892c41e8c630f8 173 Gene3D G3DSA:1.20.120.330 1 169 3.0E-58 T 17-10-2018 VI35_18790 4ef18d89ce37ffa299892c41e8c630f8 173 Pfam PF05068 Mannitol repressor 5 168 2.4E-60 T 17-10-2018 IPR007761 Mannitol repressor MtlR-like VI35_18565 a31d4e3f2dff2a1cc69813fc2829b33e 196 SMART SM00986 28 185 3.6E-32 T 17-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 VI35_18565 a31d4e3f2dff2a1cc69813fc2829b33e 196 Pfam PF03167 Uracil DNA glycosylase superfamily 31 184 4.7E-24 T 17-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 VI35_18565 a31d4e3f2dff2a1cc69813fc2829b33e 196 SMART SM00987 28 185 3.6E-32 T 17-10-2018 VI35_18565 a31d4e3f2dff2a1cc69813fc2829b33e 196 SUPERFAMILY SSF52141 4 192 1.96E-58 T 17-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 VI35_18565 a31d4e3f2dff2a1cc69813fc2829b33e 196 Gene3D G3DSA:3.40.470.10 1 195 2.1E-72 T 17-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 VI35_19760 10239ae19f7e331e2eb7f0aed8402d50 127 Gene3D G3DSA:3.90.1030.10 1 117 2.8E-48 T 17-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_19760 10239ae19f7e331e2eb7f0aed8402d50 127 Pfam PF01196 Ribosomal protein L17 20 116 2.5E-35 T 17-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_19760 10239ae19f7e331e2eb7f0aed8402d50 127 SUPERFAMILY SSF64263 1 119 3.01E-51 T 17-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_19760 10239ae19f7e331e2eb7f0aed8402d50 127 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 26.772 T 17-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_19760 10239ae19f7e331e2eb7f0aed8402d50 127 TIGRFAM TIGR00059 L17: ribosomal protein bL17 7 117 2.5E-51 T 17-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_19760 10239ae19f7e331e2eb7f0aed8402d50 127 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 17-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_20685 0835d36940a8d7b39cb5dbab320b39d0 387 SUPERFAMILY SSF53901 1 258 3.26E-78 T 17-10-2018 IPR016039 Thiolase-like GO:0003824 VI35_20685 0835d36940a8d7b39cb5dbab320b39d0 387 PIRSF PIRSF000429 1 387 3.3E-132 T 17-10-2018 IPR002155 Thiolase GO:0016747 VI35_20685 0835d36940a8d7b39cb5dbab320b39d0 387 Hamap MF_01620 3-ketoacyl-CoA thiolase [fadA]. 1 387 62.718 T 17-10-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 VI35_20685 0835d36940a8d7b39cb5dbab320b39d0 387 Gene3D G3DSA:3.40.47.10 4 267 1.9E-151 T 17-10-2018 IPR016039 Thiolase-like GO:0003824 VI35_20685 0835d36940a8d7b39cb5dbab320b39d0 387 ProSitePatterns PS00099 Thiolases active site. 368 381 - T 17-10-2018 IPR020610 Thiolase, active site GO:0016747 VI35_20685 0835d36940a8d7b39cb5dbab320b39d0 387 SUPERFAMILY SSF53901 262 386 4.25E-43 T 17-10-2018 IPR016039 Thiolase-like GO:0003824 VI35_20685 0835d36940a8d7b39cb5dbab320b39d0 387 TIGRFAM TIGR02445 fadA: acetyl-CoA C-acyltransferase FadA 3 387 3.2E-226 T 17-10-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 VI35_20685 0835d36940a8d7b39cb5dbab320b39d0 387 Gene3D G3DSA:3.40.47.10 134 381 1.9E-151 T 17-10-2018 IPR016039 Thiolase-like GO:0003824 VI35_20685 0835d36940a8d7b39cb5dbab320b39d0 387 Pfam PF02803 Thiolase, C-terminal domain 262 386 1.6E-49 T 17-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 VI35_20685 0835d36940a8d7b39cb5dbab320b39d0 387 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 17-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 VI35_20685 0835d36940a8d7b39cb5dbab320b39d0 387 Pfam PF00108 Thiolase, N-terminal domain 4 253 7.0E-81 T 17-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 VI35_20685 0835d36940a8d7b39cb5dbab320b39d0 387 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 385 5.9E-141 T 17-10-2018 IPR002155 Thiolase GO:0016747 VI35_20685 0835d36940a8d7b39cb5dbab320b39d0 387 ProSitePatterns PS00737 Thiolases signature 2. 333 349 - T 17-10-2018 IPR020613 Thiolase, conserved site GO:0016747 VI35_06495 9fe39e0eb7f1cad870d381d9603fdc0e 282 SUPERFAMILY SSF117396 1 263 7.59E-72 T 17-10-2018 IPR036520 UPF0759 superfamily VI35_06495 9fe39e0eb7f1cad870d381d9603fdc0e 282 Gene3D G3DSA:3.20.20.410 1 269 1.8E-43 T 17-10-2018 IPR036520 UPF0759 superfamily VI35_06495 9fe39e0eb7f1cad870d381d9603fdc0e 282 Pfam PF01904 Protein of unknown function DUF72 25 259 1.3E-57 T 17-10-2018 IPR002763 Protein of unknown function DUF72 VI35_13430 592290cdf8f23d4f321ba45b1a38472e 257 SUPERFAMILY SSF53850 37 252 1.09E-29 T 17-10-2018 VI35_13430 592290cdf8f23d4f321ba45b1a38472e 257 Gene3D G3DSA:3.40.190.10 119 213 3.6E-19 T 17-10-2018 VI35_13430 592290cdf8f23d4f321ba45b1a38472e 257 Gene3D G3DSA:3.40.190.10 38 252 3.6E-19 T 17-10-2018 VI35_13430 592290cdf8f23d4f321ba45b1a38472e 257 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 36 252 2.4E-19 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_03945 c986c303297735bb5287241d45865af1 1381 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 592 610 - T 17-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site VI35_03945 c986c303297735bb5287241d45865af1 1381 SUPERFAMILY SSF141072 251 358 1.57E-10 T 17-10-2018 IPR038081 CalX-like domain superfamily VI35_03945 c986c303297735bb5287241d45865af1 1381 Gene3D G3DSA:2.150.10.10 1140 1227 1.1E-17 T 17-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal VI35_03945 c986c303297735bb5287241d45865af1 1381 Gene3D G3DSA:2.150.10.10 465 701 1.1E-13 T 17-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal VI35_03945 c986c303297735bb5287241d45865af1 1381 Gene3D G3DSA:2.60.40.2030 251 371 1.0E-6 T 17-10-2018 IPR038081 CalX-like domain superfamily VI35_03945 c986c303297735bb5287241d45865af1 1381 Pfam PF00092 von Willebrand factor type A domain 830 975 6.3E-9 T 17-10-2018 IPR002035 von Willebrand factor, type A VI35_03945 c986c303297735bb5287241d45865af1 1381 PRINTS PR00313 NodO calcium binding signature 1202 1210 1.8E-10 T 17-10-2018 VI35_03945 c986c303297735bb5287241d45865af1 1381 PRINTS PR00313 NodO calcium binding signature 1211 1219 1.8E-10 T 17-10-2018 VI35_03945 c986c303297735bb5287241d45865af1 1381 PRINTS PR00313 NodO calcium binding signature 1181 1192 1.8E-10 T 17-10-2018 VI35_03945 c986c303297735bb5287241d45865af1 1381 PRINTS PR00313 NodO calcium binding signature 1256 1265 1.8E-10 T 17-10-2018 VI35_03945 c986c303297735bb5287241d45865af1 1381 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1225 1243 - T 17-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site VI35_03945 c986c303297735bb5287241d45865af1 1381 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1216 1234 - T 17-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site VI35_03945 c986c303297735bb5287241d45865af1 1381 TIGRFAM TIGR03661 T1SS_VCA0849: type I secretion C-terminal target domain (VC_A0849 subclass) 1287 1377 2.4E-14 T 17-10-2018 IPR019960 Type I secretion C-terminal target domain, VC_A0849 subclass VI35_03945 c986c303297735bb5287241d45865af1 1381 Gene3D G3DSA:2.150.10.10 1228 1353 9.3E-26 T 17-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal VI35_03945 c986c303297735bb5287241d45865af1 1381 SUPERFAMILY SSF51120 537 675 9.03E-10 T 17-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal VI35_03945 c986c303297735bb5287241d45865af1 1381 SUPERFAMILY SSF51120 1112 1310 1.13E-28 T 17-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal VI35_03945 c986c303297735bb5287241d45865af1 1381 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1198 1216 - T 17-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site VI35_03945 c986c303297735bb5287241d45865af1 1381 SUPERFAMILY SSF53300 800 1080 7.79E-17 T 17-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VI35_03945 c986c303297735bb5287241d45865af1 1381 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 596 611 10.0 T 17-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 VI35_03945 c986c303297735bb5287241d45865af1 1381 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1184 1200 0.11 T 17-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 VI35_03945 c986c303297735bb5287241d45865af1 1381 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1112 1123 1.3 T 17-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 VI35_03945 c986c303297735bb5287241d45865af1 1381 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 561 574 21.0 T 17-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 VI35_03945 c986c303297735bb5287241d45865af1 1381 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1237 1254 0.015 T 17-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 VI35_03945 c986c303297735bb5287241d45865af1 1381 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1219 1236 2.7E-4 T 17-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 VI35_03945 c986c303297735bb5287241d45865af1 1381 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1255 1272 0.0072 T 17-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 VI35_03945 c986c303297735bb5287241d45865af1 1381 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 583 594 1.2 T 17-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 VI35_03945 c986c303297735bb5287241d45865af1 1381 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 540 555 3.6 T 17-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 VI35_03945 c986c303297735bb5287241d45865af1 1381 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1201 1218 5.2E-5 T 17-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 VI35_03945 c986c303297735bb5287241d45865af1 1381 Gene3D G3DSA:3.40.50.410 822 977 4.2E-17 T 17-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VI35_04440 f6db7de66e2ee54cca24dbb50e885640 417 Gene3D G3DSA:3.40.605.10 15 409 1.4E-152 T 17-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 VI35_04440 f6db7de66e2ee54cca24dbb50e885640 417 Gene3D G3DSA:3.40.309.10 223 374 1.4E-152 T 17-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 VI35_04440 f6db7de66e2ee54cca24dbb50e885640 417 SUPERFAMILY SSF53720 4 409 2.09E-108 T 17-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 VI35_04440 f6db7de66e2ee54cca24dbb50e885640 417 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 2 416 39.979 T 17-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 VI35_04440 f6db7de66e2ee54cca24dbb50e885640 417 Pfam PF00171 Aldehyde dehydrogenase family 4 283 5.7E-15 T 17-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 VI35_04440 f6db7de66e2ee54cca24dbb50e885640 417 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 323 344 - T 17-10-2018 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 VI35_04440 f6db7de66e2ee54cca24dbb50e885640 417 PIRSF PIRSF000151 1 417 5.6E-165 T 17-10-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 VI35_04440 f6db7de66e2ee54cca24dbb50e885640 417 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 10 406 1.5E-165 T 17-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 VI35_08270 6f89e3a5247aca63d185783ce671079d 161 Hamap MF_00143 UPF0114 protein YqhA [yqhA]. 1 161 32.912 T 17-10-2018 IPR020761 Uncharacterised protein family UPF0114, bacteria VI35_08270 6f89e3a5247aca63d185783ce671079d 161 Pfam PF03350 Uncharacterized protein family, UPF0114 10 123 5.0E-20 T 17-10-2018 IPR005134 Uncharacterised protein family UPF0114 VI35_17690 59958157f5732953cadcc614f199ebb6 532 SUPERFAMILY SSF55931 10 522 3.34E-193 T 17-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 VI35_17690 59958157f5732953cadcc614f199ebb6 532 Gene3D G3DSA:3.30.590.20 22 532 4.2E-187 T 17-10-2018 VI35_17690 59958157f5732953cadcc614f199ebb6 532 TIGRFAM TIGR01434 glu_cys_ligase: glutamate--cysteine ligase 13 524 4.1E-200 T 17-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 VI35_17690 59958157f5732953cadcc614f199ebb6 532 Hamap MF_00578 Glutamate--cysteine ligase [gshA]. 1 532 218.31 T 17-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 VI35_17690 59958157f5732953cadcc614f199ebb6 532 Pfam PF04262 Glutamate-cysteine ligase 13 386 3.5E-167 T 17-10-2018 IPR007370 Glutamate--cysteine ligase GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 VI35_20965 3a94726c415cbcdf567e19ce85f0195b 339 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 307 326 1.5E-55 T 17-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 VI35_20965 3a94726c415cbcdf567e19ce85f0195b 339 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 252 268 1.5E-55 T 17-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 VI35_20965 3a94726c415cbcdf567e19ce85f0195b 339 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 160 179 1.5E-55 T 17-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 VI35_20965 3a94726c415cbcdf567e19ce85f0195b 339 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 277 292 1.5E-55 T 17-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 VI35_20965 3a94726c415cbcdf567e19ce85f0195b 339 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 129 143 1.5E-55 T 17-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 VI35_20965 3a94726c415cbcdf567e19ce85f0195b 339 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 198 217 1.5E-55 T 17-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 VI35_20965 3a94726c415cbcdf567e19ce85f0195b 339 Pfam PF00490 Delta-aminolevulinic acid dehydratase 12 332 6.7E-141 T 17-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 VI35_20965 3a94726c415cbcdf567e19ce85f0195b 339 SMART SM01004 9 333 1.3E-245 T 17-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 VI35_20965 3a94726c415cbcdf567e19ce85f0195b 339 Gene3D G3DSA:3.20.20.70 2 337 4.6E-150 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_20965 3a94726c415cbcdf567e19ce85f0195b 339 SUPERFAMILY SSF51569 8 335 3.37E-145 T 17-10-2018 VI35_20965 3a94726c415cbcdf567e19ce85f0195b 339 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 252 264 - T 17-10-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 VI35_20965 3a94726c415cbcdf567e19ce85f0195b 339 PIRSF PIRSF001415 2 336 1.1E-149 T 17-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 VI35_13590 09033eaad62a50d1eab7664672008b61 689 SUPERFAMILY SSF143724 107 315 2.94E-57 T 17-10-2018 VI35_13590 09033eaad62a50d1eab7664672008b61 689 Hamap MF_00347 Polyphosphate kinase [ppk]. 4 682 27.207 T 17-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 VI35_13590 09033eaad62a50d1eab7664672008b61 689 Gene3D G3DSA:3.30.870.10 323 500 3.4E-71 T 17-10-2018 VI35_13590 09033eaad62a50d1eab7664672008b61 689 Pfam PF13089 Polyphosphate kinase N-terminal domain 7 110 7.8E-31 T 17-10-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 VI35_13590 09033eaad62a50d1eab7664672008b61 689 SUPERFAMILY SSF56024 501 684 2.09E-71 T 17-10-2018 VI35_13590 09033eaad62a50d1eab7664672008b61 689 Pfam PF02503 Polyphosphate kinase middle domain 120 319 3.2E-41 T 17-10-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 VI35_13590 09033eaad62a50d1eab7664672008b61 689 Gene3D G3DSA:3.30.1840.10 110 308 1.3E-71 T 17-10-2018 IPR036830 Polyphosphate kinase middle domain superfamily KEGG: 00190+2.7.4.1 VI35_13590 09033eaad62a50d1eab7664672008b61 689 PIRSF PIRSF015589 1 689 1.1E-240 T 17-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 VI35_13590 09033eaad62a50d1eab7664672008b61 689 Pfam PF13090 Polyphosphate kinase C-terminal domain 332 677 3.3E-146 T 17-10-2018 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 VI35_13590 09033eaad62a50d1eab7664672008b61 689 SUPERFAMILY SSF56024 318 495 1.53E-53 T 17-10-2018 VI35_13590 09033eaad62a50d1eab7664672008b61 689 Gene3D G3DSA:1.20.58.310 9 109 1.3E-34 T 17-10-2018 VI35_13590 09033eaad62a50d1eab7664672008b61 689 SUPERFAMILY SSF140356 4 105 1.83E-30 T 17-10-2018 IPR036832 Polyphosphate kinase N-terminal domain superfamily KEGG: 00190+2.7.4.1 VI35_13590 09033eaad62a50d1eab7664672008b61 689 Gene3D G3DSA:3.30.870.10 501 687 2.7E-75 T 17-10-2018 VI35_13590 09033eaad62a50d1eab7664672008b61 689 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 7 678 7.2E-262 T 17-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 VI35_07655 c57bfff839ceeae9d6c76da780c62710 539 Gene3D G3DSA:3.90.76.10 70 193 1.0E-197 T 17-10-2018 VI35_07655 c57bfff839ceeae9d6c76da780c62710 539 Gene3D G3DSA:3.10.105.10 295 509 1.0E-197 T 17-10-2018 VI35_07655 c57bfff839ceeae9d6c76da780c62710 539 PIRSF PIRSF002741 1 539 2.2E-121 T 17-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 VI35_07655 c57bfff839ceeae9d6c76da780c62710 539 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 83 459 1.8E-91 T 17-10-2018 IPR000914 Solute-binding protein family 5 domain VI35_07655 c57bfff839ceeae9d6c76da780c62710 539 Gene3D G3DSA:3.40.190.10 41 521 1.0E-197 T 17-10-2018 VI35_07655 c57bfff839ceeae9d6c76da780c62710 539 SUPERFAMILY SSF53850 33 535 7.85E-155 T 17-10-2018 VI35_04980 52e39f52d6c67208e2c0d48211124dbd 136 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 84 92 1.3E-11 T 17-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 VI35_04980 52e39f52d6c67208e2c0d48211124dbd 136 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 93 102 1.3E-11 T 17-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 VI35_04980 52e39f52d6c67208e2c0d48211124dbd 136 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 6 20 1.3E-11 T 17-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 VI35_04980 52e39f52d6c67208e2c0d48211124dbd 136 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 3 131 7.1E-46 T 17-10-2018 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L VI35_04980 52e39f52d6c67208e2c0d48211124dbd 136 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 3 133 2.6E-51 T 17-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 VI35_04980 52e39f52d6c67208e2c0d48211124dbd 136 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 13 26 - T 17-10-2018 IPR019823 Large-conductance mechanosensitive channel, conserved site VI35_04980 52e39f52d6c67208e2c0d48211124dbd 136 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 3 132 23.966 T 17-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 VI35_04980 52e39f52d6c67208e2c0d48211124dbd 136 SUPERFAMILY SSF81330 13 127 2.09E-35 T 17-10-2018 IPR036019 Gated mechanosensitive channel VI35_04980 52e39f52d6c67208e2c0d48211124dbd 136 Gene3D G3DSA:1.10.1200.120 3 134 1.1E-43 T 17-10-2018 IPR036019 Gated mechanosensitive channel VI35_18045 5059952dbf5d054fa3b9c22044582ff8 138 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 21 37 - T 17-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 VI35_18045 5059952dbf5d054fa3b9c22044582ff8 138 Gene3D G3DSA:3.30.160.20 1 135 8.7E-34 T 17-10-2018 VI35_18045 5059952dbf5d054fa3b9c22044582ff8 138 SUPERFAMILY SSF75620 8 113 9.02E-15 T 17-10-2018 VI35_18045 5059952dbf5d054fa3b9c22044582ff8 138 Pfam PF00472 RF-1 domain 8 132 9.9E-24 T 17-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 VI35_15425 71c399bac245dd05d85cd9d61c92c63e 676 Pfam PF05649 Peptidase family M13 44 420 3.0E-104 T 17-10-2018 IPR008753 Peptidase M13, N-terminal domain GO:0006508 VI35_15425 71c399bac245dd05d85cd9d61c92c63e 676 SUPERFAMILY SSF55486 30 676 1.9E-216 T 17-10-2018 VI35_15425 71c399bac245dd05d85cd9d61c92c63e 676 Gene3D G3DSA:1.10.1380.10 70 459 4.8E-245 T 17-10-2018 VI35_15425 71c399bac245dd05d85cd9d61c92c63e 676 Pfam PF01431 Peptidase family M13 472 673 1.4E-72 T 17-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 VI35_15425 71c399bac245dd05d85cd9d61c92c63e 676 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 482 494 2.5E-21 T 17-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 VI35_15425 71c399bac245dd05d85cd9d61c92c63e 676 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 574 585 2.5E-21 T 17-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 VI35_15425 71c399bac245dd05d85cd9d61c92c63e 676 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 464 476 2.5E-21 T 17-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 VI35_15425 71c399bac245dd05d85cd9d61c92c63e 676 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 503 519 2.5E-21 T 17-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 VI35_15425 71c399bac245dd05d85cd9d61c92c63e 676 Gene3D G3DSA:3.40.390.10 39 676 4.8E-245 T 17-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 VI35_04825 9f5cac843e4e37524964b143b3317755 158 Pfam PF03449 Transcription elongation factor, N-terminal 5 74 1.1E-31 T 17-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 VI35_04825 9f5cac843e4e37524964b143b3317755 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 156 33.646 T 17-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 VI35_04825 9f5cac843e4e37524964b143b3317755 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 17-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 VI35_04825 9f5cac843e4e37524964b143b3317755 158 Gene3D G3DSA:3.10.50.30 76 158 1.7E-31 T 17-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 VI35_04825 9f5cac843e4e37524964b143b3317755 158 SUPERFAMILY SSF54534 82 157 2.09E-24 T 17-10-2018 VI35_04825 9f5cac843e4e37524964b143b3317755 158 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 121 137 - T 17-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 VI35_04825 9f5cac843e4e37524964b143b3317755 158 PIRSF PIRSF006092 1 158 1.3E-53 T 17-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 VI35_04825 9f5cac843e4e37524964b143b3317755 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 155 8.9E-59 T 17-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 VI35_04825 9f5cac843e4e37524964b143b3317755 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 82 157 3.4E-28 T 17-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 VI35_04825 9f5cac843e4e37524964b143b3317755 158 SUPERFAMILY SSF46557 3 78 2.35E-29 T 17-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 VI35_04825 9f5cac843e4e37524964b143b3317755 158 Gene3D G3DSA:1.10.287.180 1 75 2.8E-32 T 17-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 VI35_11430 24a19b8787602b2d46c5451357df6aaa 310 SUPERFAMILY SSF46785 4 108 3.76E-15 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_11430 24a19b8787602b2d46c5451357df6aaa 310 Gene3D G3DSA:3.40.190.10 161 277 7.6E-14 T 17-10-2018 VI35_11430 24a19b8787602b2d46c5451357df6aaa 310 Gene3D G3DSA:3.40.190.10 90 289 7.6E-14 T 17-10-2018 VI35_11430 24a19b8787602b2d46c5451357df6aaa 310 Gene3D G3DSA:1.10.10.10 2 88 9.4E-18 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_11430 24a19b8787602b2d46c5451357df6aaa 310 SUPERFAMILY SSF53850 89 307 3.08E-22 T 17-10-2018 VI35_11430 24a19b8787602b2d46c5451357df6aaa 310 Pfam PF03466 LysR substrate binding domain 89 303 3.7E-20 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_11430 24a19b8787602b2d46c5451357df6aaa 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 5.1E-5 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_11430 24a19b8787602b2d46c5451357df6aaa 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 5.1E-5 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_11430 24a19b8787602b2d46c5451357df6aaa 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 5.1E-5 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_11430 24a19b8787602b2d46c5451357df6aaa 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 3.2E-16 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_19100 67060947d4d1db2661dc26a758ca6a56 839 ProSitePatterns PS01092 Adenylate cyclase class-I signature 1. 241 252 - T 17-10-2018 IPR024686 Adenylate cyclase class-I, conserved site KEGG: 00230+4.6.1.1 VI35_19100 67060947d4d1db2661dc26a758ca6a56 839 ProSitePatterns PS01093 Adenylate cyclase class-I signature 2. 600 614 - T 17-10-2018 IPR024686 Adenylate cyclase class-I, conserved site KEGG: 00230+4.6.1.1 VI35_19100 67060947d4d1db2661dc26a758ca6a56 839 Pfam PF12633 Adenylate cyclase NT domain 5 200 1.1E-76 T 17-10-2018 IPR024685 Adenylate cyclase class-I, N-terminal domain KEGG: 00230+4.6.1.1 VI35_19100 67060947d4d1db2661dc26a758ca6a56 839 PIRSF PIRSF001444 1 838 0.0 T 17-10-2018 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 VI35_19100 67060947d4d1db2661dc26a758ca6a56 839 Pfam PF01295 Adenylate cyclase, class-I 227 824 6.1E-255 T 17-10-2018 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 VI35_19525 b7e374d9bcad29d52b428b842fdef157 567 Gene3D G3DSA:3.40.50.10730 146 353 1.6E-262 T 17-10-2018 IPR038364 Urocanase, central domain superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VI35_19525 b7e374d9bcad29d52b428b842fdef157 567 ProSitePatterns PS01233 Urocanase signature. 446 461 - T 17-10-2018 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VI35_19525 b7e374d9bcad29d52b428b842fdef157 567 Pfam PF17392 Urocanase C-terminal domain 356 550 3.5E-92 T 17-10-2018 IPR035401 Urocanase, C-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VI35_19525 b7e374d9bcad29d52b428b842fdef157 567 Hamap MF_00577 Urocanate hydratase [hutU]. 4 560 50.02 T 17-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VI35_19525 b7e374d9bcad29d52b428b842fdef157 567 Gene3D G3DSA:3.40.1770.10 21 546 1.6E-262 T 17-10-2018 VI35_19525 b7e374d9bcad29d52b428b842fdef157 567 PIRSF PIRSF001423 1 564 1.8E-296 T 17-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VI35_19525 b7e374d9bcad29d52b428b842fdef157 567 Pfam PF01175 Urocanase Rossmann-like domain 145 353 1.2E-87 T 17-10-2018 IPR035085 Urocanase, Rossmann-like domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VI35_19525 b7e374d9bcad29d52b428b842fdef157 567 TIGRFAM TIGR01228 hutU: urocanate hydratase 15 558 8.4E-295 T 17-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VI35_19525 b7e374d9bcad29d52b428b842fdef157 567 SUPERFAMILY SSF111326 9 560 2.22E-263 T 17-10-2018 IPR036190 Urocanase superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VI35_19525 b7e374d9bcad29d52b428b842fdef157 567 Pfam PF17391 Urocanase N-terminal domain 16 142 9.8E-63 T 17-10-2018 IPR035400 Urocanase, N-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VI35_12770 e1b2ec272a00a793d9d7913f8765f4ba 114 PIRSF PIRSF006223 7 114 1.4E-44 T 17-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE VI35_12770 e1b2ec272a00a793d9d7913f8765f4ba 114 Gene3D G3DSA:1.10.10.370 44 114 3.5E-31 T 17-10-2018 VI35_12770 e1b2ec272a00a793d9d7913f8765f4ba 114 Pfam PF04358 DsrC like protein 9 114 3.2E-44 T 17-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE VI35_12770 e1b2ec272a00a793d9d7913f8765f4ba 114 Gene3D G3DSA:3.30.1420.10 2 43 2.1E-9 T 17-10-2018 VI35_12770 e1b2ec272a00a793d9d7913f8765f4ba 114 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 8 114 3.9E-48 T 17-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE VI35_12770 e1b2ec272a00a793d9d7913f8765f4ba 114 SUPERFAMILY SSF69721 5 114 2.09E-40 T 17-10-2018 IPR025526 DsrC-like domain superfamily VI35_17060 03cde992a8600421d94cebc931f56834 620 SUPERFAMILY SSF48452 79 173 4.46E-6 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_17060 03cde992a8600421d94cebc931f56834 620 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 455 618 1.0E-53 T 17-10-2018 IPR000160 GGDEF domain VI35_17060 03cde992a8600421d94cebc931f56834 620 SUPERFAMILY SSF48452 145 353 6.25E-19 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_17060 03cde992a8600421d94cebc931f56834 620 SMART SM00267 447 619 1.7E-52 T 17-10-2018 IPR000160 GGDEF domain VI35_17060 03cde992a8600421d94cebc931f56834 620 Pfam PF00990 Diguanylate cyclase, GGDEF domain 458 615 5.4E-45 T 17-10-2018 IPR000160 GGDEF domain VI35_17060 03cde992a8600421d94cebc931f56834 620 Gene3D G3DSA:1.25.40.10 264 431 1.2E-9 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_17060 03cde992a8600421d94cebc931f56834 620 Pfam PF13181 Tetratricopeptide repeat 186 210 0.012 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_17060 03cde992a8600421d94cebc931f56834 620 Gene3D G3DSA:1.25.40.10 72 263 8.2E-19 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_17060 03cde992a8600421d94cebc931f56834 620 SUPERFAMILY SSF55073 463 618 1.41E-45 T 17-10-2018 IPR029787 Nucleotide cyclase VI35_17060 03cde992a8600421d94cebc931f56834 620 SMART SM00028 225 258 330.0 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_17060 03cde992a8600421d94cebc931f56834 620 SMART SM00028 265 298 140.0 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_17060 03cde992a8600421d94cebc931f56834 620 SMART SM00028 145 178 81.0 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_17060 03cde992a8600421d94cebc931f56834 620 SMART SM00028 185 217 34.0 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_17060 03cde992a8600421d94cebc931f56834 620 SMART SM00028 105 138 170.0 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_17060 03cde992a8600421d94cebc931f56834 620 Gene3D G3DSA:3.30.70.270 446 619 9.7E-57 T 17-10-2018 VI35_12285 75deec27ce1fbeb9ea0fa698a0412c41 425 Gene3D G3DSA:3.40.50.800 326 422 1.7E-22 T 17-10-2018 IPR036621 Anticodon-binding domain superfamily VI35_12285 75deec27ce1fbeb9ea0fa698a0412c41 425 Pfam PF03129 Anticodon binding domain 331 422 1.4E-8 T 17-10-2018 IPR004154 Anticodon-binding VI35_12285 75deec27ce1fbeb9ea0fa698a0412c41 425 SUPERFAMILY SSF52954 328 421 4.25E-21 T 17-10-2018 VI35_12285 75deec27ce1fbeb9ea0fa698a0412c41 425 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 6 411 1.2E-154 T 17-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 VI35_12285 75deec27ce1fbeb9ea0fa698a0412c41 425 Pfam PF13393 Histidyl-tRNA synthetase 10 312 1.5E-46 T 17-10-2018 VI35_12285 75deec27ce1fbeb9ea0fa698a0412c41 425 PIRSF PIRSF001549 2 424 6.1E-120 T 17-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 VI35_12285 75deec27ce1fbeb9ea0fa698a0412c41 425 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 3 422 32.989 T 17-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 VI35_12285 75deec27ce1fbeb9ea0fa698a0412c41 425 SUPERFAMILY SSF55681 5 319 1.99E-100 T 17-10-2018 VI35_12285 75deec27ce1fbeb9ea0fa698a0412c41 425 Gene3D G3DSA:3.30.930.10 2 324 4.9E-117 T 17-10-2018 VI35_06640 3b84fa80269da768489481907286762a 92 SUPERFAMILY SSF54534 3 89 1.05E-26 T 17-10-2018 VI35_06640 3b84fa80269da768489481907286762a 92 Gene3D G3DSA:3.10.50.40 1 92 2.8E-34 T 17-10-2018 VI35_06640 3b84fa80269da768489481907286762a 92 Pfam PF13616 PPIC-type PPIASE domain 13 89 7.1E-20 T 17-10-2018 VI35_00445 f4a3ff0d3e0482542870962bc58b67d2 160 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 3 159 36.903 T 17-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 VI35_00445 f4a3ff0d3e0482542870962bc58b67d2 160 Gene3D G3DSA:3.40.50.620 1 160 3.1E-58 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_00445 f4a3ff0d3e0482542870962bc58b67d2 160 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 12 78 0.003 T 17-10-2018 VI35_00445 f4a3ff0d3e0482542870962bc58b67d2 160 Pfam PF01467 Cytidylyltransferase-like 6 134 1.0E-22 T 17-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 VI35_00445 f4a3ff0d3e0482542870962bc58b67d2 160 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 86 102 2.8E-52 T 17-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 VI35_00445 f4a3ff0d3e0482542870962bc58b67d2 160 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 21 42 2.8E-52 T 17-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 VI35_00445 f4a3ff0d3e0482542870962bc58b67d2 160 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 50 74 2.8E-52 T 17-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 VI35_00445 f4a3ff0d3e0482542870962bc58b67d2 160 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 113 135 2.8E-52 T 17-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 VI35_00445 f4a3ff0d3e0482542870962bc58b67d2 160 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 3 21 2.8E-52 T 17-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 VI35_00445 f4a3ff0d3e0482542870962bc58b67d2 160 SUPERFAMILY SSF52374 4 157 2.95E-46 T 17-10-2018 VI35_00445 f4a3ff0d3e0482542870962bc58b67d2 160 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 5 157 3.3E-62 T 17-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 VI35_00445 f4a3ff0d3e0482542870962bc58b67d2 160 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 5 64 5.7E-20 T 17-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 VI35_16585 e47b74175f43ef6ef3008a78036aedcf 87 Pfam PF17209 Hfq protein 7 68 4.8E-31 T 17-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 VI35_16585 e47b74175f43ef6ef3008a78036aedcf 87 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 5 64 6.6E-30 T 17-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 VI35_16585 e47b74175f43ef6ef3008a78036aedcf 87 Gene3D G3DSA:2.30.30.100 1 72 1.6E-34 T 17-10-2018 VI35_16585 e47b74175f43ef6ef3008a78036aedcf 87 SUPERFAMILY SSF50182 7 69 1.67E-24 T 17-10-2018 IPR010920 LSM domain superfamily VI35_16585 e47b74175f43ef6ef3008a78036aedcf 87 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 3 64 27.549 T 17-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 VI35_20490 d36b07214566159381cddf42e6670230 208 TIGRFAM TIGR00498 lexA: repressor LexA 1 205 4.0E-80 T 17-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 VI35_20490 d36b07214566159381cddf42e6670230 208 Gene3D G3DSA:2.10.109.10 86 208 1.9E-45 T 17-10-2018 VI35_20490 d36b07214566159381cddf42e6670230 208 Pfam PF00717 Peptidase S24-like 120 185 4.1E-16 T 17-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C VI35_20490 d36b07214566159381cddf42e6670230 208 SUPERFAMILY SSF46785 3 69 4.13E-20 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_20490 d36b07214566159381cddf42e6670230 208 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 128 139 9.1E-13 T 17-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 VI35_20490 d36b07214566159381cddf42e6670230 208 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 156 168 9.1E-13 T 17-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 VI35_20490 d36b07214566159381cddf42e6670230 208 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 117 127 9.1E-13 T 17-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 VI35_20490 d36b07214566159381cddf42e6670230 208 Hamap MF_00015 LexA repressor [lexA]. 3 205 32.484 T 17-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 VI35_20490 d36b07214566159381cddf42e6670230 208 Pfam PF01726 LexA DNA binding domain 1 65 1.8E-31 T 17-10-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 VI35_20490 d36b07214566159381cddf42e6670230 208 Gene3D G3DSA:1.10.10.10 1 69 7.6E-28 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_20490 d36b07214566159381cddf42e6670230 208 SUPERFAMILY SSF51306 82 204 3.84E-37 T 17-10-2018 IPR036286 LexA/Signal peptidase-like superfamily VI35_20060 d395515d3a0c43b1e4f608e7af54ad1a 189 Pfam PF13511 Domain of unknown function (DUF4124) 10 54 1.3E-15 T 17-10-2018 IPR025392 Domain of unknown function DUF4124 VI35_16935 a1f24284cfd47b06d16e930a68fe2096 408 Pfam PF07690 Major Facilitator Superfamily 24 361 2.2E-19 T 17-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VI35_16935 a1f24284cfd47b06d16e930a68fe2096 408 Gene3D G3DSA:1.20.1250.20 20 201 7.1E-18 T 17-10-2018 VI35_16935 a1f24284cfd47b06d16e930a68fe2096 408 Gene3D G3DSA:1.20.1250.20 223 404 8.9E-7 T 17-10-2018 VI35_16935 a1f24284cfd47b06d16e930a68fe2096 408 SUPERFAMILY SSF103473 13 402 9.16E-31 T 17-10-2018 IPR036259 MFS transporter superfamily VI35_02000 42dcbb8b0423f5e9e9ea128711e1981b 89 Pfam PF01313 Bacterial export proteins, family 3 8 77 3.1E-23 T 17-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 VI35_02000 42dcbb8b0423f5e9e9ea128711e1981b 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 2 87 7.6E-27 T 17-10-2018 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 VI35_02000 42dcbb8b0423f5e9e9ea128711e1981b 89 PIRSF PIRSF004669 1 89 8.2E-26 T 17-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 VI35_02000 42dcbb8b0423f5e9e9ea128711e1981b 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 1.3E-15 T 17-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 VI35_02000 42dcbb8b0423f5e9e9ea128711e1981b 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 1.3E-15 T 17-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 VI35_02000 42dcbb8b0423f5e9e9ea128711e1981b 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 1.3E-15 T 17-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 VI35_06300 9465498363894484bfe4af53c5ec563f 116 Pfam PF03960 ArsC family 6 111 5.4E-16 T 17-10-2018 IPR006660 Arsenate reductase-like VI35_06300 9465498363894484bfe4af53c5ec563f 116 Gene3D G3DSA:3.40.30.10 2 115 1.4E-42 T 17-10-2018 VI35_06300 9465498363894484bfe4af53c5ec563f 116 SUPERFAMILY SSF52833 3 114 5.81E-35 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_06300 9465498363894484bfe4af53c5ec563f 116 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 4 112 8.8E-33 T 17-10-2018 IPR006504 Transcriptional regulator Spx/MgsR VI35_03020 284d6e635e554dec9f8d5ca65bf06579 335 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 151 167 - T 17-10-2018 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 VI35_03020 284d6e635e554dec9f8d5ca65bf06579 335 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 4 147 3.8E-26 T 17-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 VI35_03020 284d6e635e554dec9f8d5ca65bf06579 335 SMART SM00859 3 148 1.5E-45 T 17-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 VI35_03020 284d6e635e554dec9f8d5ca65bf06579 335 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 165 312 1.5E-12 T 17-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 VI35_03020 284d6e635e554dec9f8d5ca65bf06579 335 Gene3D G3DSA:3.40.50.720 6 329 9.6E-114 T 17-10-2018 VI35_03020 284d6e635e554dec9f8d5ca65bf06579 335 SUPERFAMILY SSF51735 2 179 2.41E-39 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_03020 284d6e635e554dec9f8d5ca65bf06579 335 Gene3D G3DSA:3.30.360.10 155 313 9.6E-114 T 17-10-2018 VI35_03020 284d6e635e554dec9f8d5ca65bf06579 335 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 2 335 37.9 T 17-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 VI35_03020 284d6e635e554dec9f8d5ca65bf06579 335 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 3 334 1.0E-112 T 17-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 VI35_03020 284d6e635e554dec9f8d5ca65bf06579 335 SUPERFAMILY SSF55347 156 309 4.86E-48 T 17-10-2018 VI35_01570 9bde9b04c391b70de016d9d0fc2e3c32 228 SUPERFAMILY SSF51182 1 227 1.88E-71 T 17-10-2018 IPR011051 RmlC-like cupin domain superfamily VI35_01570 9bde9b04c391b70de016d9d0fc2e3c32 228 PIRSF PIRSF006232 1 226 5.5E-51 T 17-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 VI35_01570 9bde9b04c391b70de016d9d0fc2e3c32 228 Pfam PF02678 Pirin 8 119 1.4E-33 T 17-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 VI35_01570 9bde9b04c391b70de016d9d0fc2e3c32 228 Gene3D G3DSA:2.60.120.10 8 228 1.9E-84 T 17-10-2018 IPR014710 RmlC-like jelly roll fold VI35_01570 9bde9b04c391b70de016d9d0fc2e3c32 228 Gene3D G3DSA:2.60.120.10 11 135 1.9E-84 T 17-10-2018 IPR014710 RmlC-like jelly roll fold VI35_05690 5932a99b0eb062093e44cd52362bfa5f 663 SMART SM00861 355 526 8.3E-68 T 17-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain VI35_05690 5932a99b0eb062093e44cd52362bfa5f 663 SUPERFAMILY SSF52518 347 528 1.43E-68 T 17-10-2018 IPR029061 Thiamin diphosphate-binding fold VI35_05690 5932a99b0eb062093e44cd52362bfa5f 663 Gene3D G3DSA:3.40.50.970 327 538 9.8E-84 T 17-10-2018 VI35_05690 5932a99b0eb062093e44cd52362bfa5f 663 SUPERFAMILY SSF52518 5 329 8.04E-121 T 17-10-2018 IPR029061 Thiamin diphosphate-binding fold VI35_05690 5932a99b0eb062093e44cd52362bfa5f 663 ProSitePatterns PS00802 Transketolase signature 2. 468 484 - T 17-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VI35_05690 5932a99b0eb062093e44cd52362bfa5f 663 TIGRFAM TIGR00232 tktlase_bact: transketolase 5 662 0.0 T 17-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 VI35_05690 5932a99b0eb062093e44cd52362bfa5f 663 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 4 334 1.1E-166 T 17-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VI35_05690 5932a99b0eb062093e44cd52362bfa5f 663 ProSitePatterns PS00801 Transketolase signature 1. 12 32 - T 17-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VI35_05690 5932a99b0eb062093e44cd52362bfa5f 663 Pfam PF02780 Transketolase, C-terminal domain 541 656 4.6E-16 T 17-10-2018 IPR033248 Transketolase, C-terminal domain VI35_05690 5932a99b0eb062093e44cd52362bfa5f 663 SUPERFAMILY SSF52922 534 662 3.66E-42 T 17-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 VI35_05690 5932a99b0eb062093e44cd52362bfa5f 663 Pfam PF02779 Transketolase, pyrimidine binding domain 354 525 4.0E-46 T 17-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain VI35_05690 5932a99b0eb062093e44cd52362bfa5f 663 Gene3D G3DSA:3.40.50.970 2 326 4.1E-132 T 17-10-2018 VI35_05690 5932a99b0eb062093e44cd52362bfa5f 663 Gene3D G3DSA:3.40.50.920 539 663 2.3E-41 T 17-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 VI35_07350 2e199d9df446bfd3584d277ddb6c88c7 142 SUPERFAMILY SSF81324 27 129 1.23E-10 T 17-10-2018 VI35_07350 2e199d9df446bfd3584d277ddb6c88c7 142 Pfam PF07885 Ion channel 64 127 6.1E-8 T 17-10-2018 IPR013099 Potassium channel domain VI35_07350 2e199d9df446bfd3584d277ddb6c88c7 142 Gene3D G3DSA:1.10.287.70 1 140 1.6E-8 T 17-10-2018 VI35_07635 30ae166f9e9e3a1c56dd93ad06a9d728 563 Pfam PF07694 5TMR of 5TMR-LYT 26 193 9.7E-60 T 17-10-2018 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 VI35_07635 30ae166f9e9e3a1c56dd93ad06a9d728 563 Pfam PF06580 Histidine kinase 367 444 4.5E-26 T 17-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 VI35_07635 30ae166f9e9e3a1c56dd93ad06a9d728 563 SMART SM00065 224 361 4.3E-5 T 17-10-2018 IPR003018 GAF domain GO:0005515 VI35_07635 30ae166f9e9e3a1c56dd93ad06a9d728 563 SUPERFAMILY SSF55874 422 552 1.72E-13 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_07635 30ae166f9e9e3a1c56dd93ad06a9d728 563 SUPERFAMILY SSF55781 230 352 6.87E-8 T 17-10-2018 VI35_07635 30ae166f9e9e3a1c56dd93ad06a9d728 563 Gene3D G3DSA:3.30.565.10 422 556 1.5E-12 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_14590 4fc1dda56b986fae23343b7b25e2b331 608 Pfam PF04411 PD-(D/E)XK nuclease superfamily 386 516 5.1E-6 T 17-10-2018 IPR007505 PD-(D/E)XK nuclease superfamily 7 VI35_18990 c04bf2f0f6a940a2381f0140977c464b 538 SUPERFAMILY SSF51445 57 459 1.61E-70 T 17-10-2018 IPR017853 Glycoside hydrolase superfamily VI35_18990 c04bf2f0f6a940a2381f0140977c464b 538 Pfam PF00128 Alpha amylase, catalytic domain 88 173 1.0E-23 T 17-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VI35_18990 c04bf2f0f6a940a2381f0140977c464b 538 Pfam PF00128 Alpha amylase, catalytic domain 203 392 3.2E-15 T 17-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VI35_18990 c04bf2f0f6a940a2381f0140977c464b 538 SUPERFAMILY SSF51011 467 535 6.33E-7 T 17-10-2018 VI35_18990 c04bf2f0f6a940a2381f0140977c464b 538 SMART SM00642 62 449 1.8E-39 T 17-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VI35_18990 c04bf2f0f6a940a2381f0140977c464b 538 Gene3D G3DSA:3.20.20.80 56 182 4.5E-36 T 17-10-2018 VI35_18990 c04bf2f0f6a940a2381f0140977c464b 538 Gene3D G3DSA:3.20.20.80 198 454 5.4E-31 T 17-10-2018 VI35_18990 c04bf2f0f6a940a2381f0140977c464b 538 Gene3D G3DSA:2.60.40.1180 455 536 2.8E-9 T 17-10-2018 IPR013780 Glycosyl hydrolase, all-beta VI35_12725 5596b3bc6640be34dcc3ac7fe87a33da 299 Gene3D G3DSA:3.20.20.60 3 296 2.1E-101 T 17-10-2018 VI35_12725 5596b3bc6640be34dcc3ac7fe87a33da 299 Hamap MF_01939 2-methylisocitrate lyase [prpB]. 6 293 49.284 T 17-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 VI35_12725 5596b3bc6640be34dcc3ac7fe87a33da 299 Pfam PF13714 Phosphoenolpyruvate phosphomutase 14 253 1.3E-47 T 17-10-2018 VI35_12725 5596b3bc6640be34dcc3ac7fe87a33da 299 SUPERFAMILY SSF51621 7 291 4.17E-98 T 17-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 VI35_12725 5596b3bc6640be34dcc3ac7fe87a33da 299 ProSitePatterns PS00161 Isocitrate lyase signature. 122 127 - T 17-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 VI35_12725 5596b3bc6640be34dcc3ac7fe87a33da 299 TIGRFAM TIGR02317 prpB: methylisocitrate lyase 9 292 1.6E-126 T 17-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 VI35_01290 a450fbb21d3f0e3286d4c1b6a18367bd 183 PRINTS PR00338 Transcription termination factor NUSG signature 63 75 6.8E-21 T 17-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 VI35_01290 a450fbb21d3f0e3286d4c1b6a18367bd 183 PRINTS PR00338 Transcription termination factor NUSG signature 141 156 6.8E-21 T 17-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 VI35_01290 a450fbb21d3f0e3286d4c1b6a18367bd 183 PRINTS PR00338 Transcription termination factor NUSG signature 159 175 6.8E-21 T 17-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 VI35_01290 a450fbb21d3f0e3286d4c1b6a18367bd 183 Gene3D G3DSA:3.30.70.940 3 125 2.5E-47 T 17-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 VI35_01290 a450fbb21d3f0e3286d4c1b6a18367bd 183 SUPERFAMILY SSF50104 127 182 6.52E-19 T 17-10-2018 IPR008991 Translation protein SH3-like domain superfamily VI35_01290 a450fbb21d3f0e3286d4c1b6a18367bd 183 Gene3D G3DSA:2.30.30.30 126 182 3.6E-26 T 17-10-2018 IPR014722 Ribosomal protein L2, domain 2 VI35_01290 a450fbb21d3f0e3286d4c1b6a18367bd 183 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 8 183 25.001 T 17-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 VI35_01290 a450fbb21d3f0e3286d4c1b6a18367bd 183 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 11 182 7.7E-69 T 17-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 VI35_01290 a450fbb21d3f0e3286d4c1b6a18367bd 183 SMART SM00739 129 156 2.8E-6 T 17-10-2018 IPR005824 KOW VI35_01290 a450fbb21d3f0e3286d4c1b6a18367bd 183 ProSitePatterns PS01014 Transcription termination factor nusG signature. 166 175 - T 17-10-2018 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site VI35_01290 a450fbb21d3f0e3286d4c1b6a18367bd 183 Pfam PF02357 Transcription termination factor nusG 9 114 2.2E-26 T 17-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 VI35_01290 a450fbb21d3f0e3286d4c1b6a18367bd 183 SUPERFAMILY SSF82679 9 119 5.62E-40 T 17-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 VI35_01290 a450fbb21d3f0e3286d4c1b6a18367bd 183 Pfam PF00467 KOW motif 132 162 4.5E-8 T 17-10-2018 IPR005824 KOW VI35_01290 a450fbb21d3f0e3286d4c1b6a18367bd 183 SMART SM00738 8 117 4.2E-49 T 17-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 VI35_12755 8c58e7ee231b125df9a4376e20e60f10 308 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 248 290 - T 17-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VI35_12755 8c58e7ee231b125df9a4376e20e60f10 308 SUPERFAMILY SSF46689 247 296 4.39E-8 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_12755 8c58e7ee231b125df9a4376e20e60f10 308 Gene3D G3DSA:1.10.10.60 191 306 7.9E-24 T 17-10-2018 VI35_12755 8c58e7ee231b125df9a4376e20e60f10 308 SUPERFAMILY SSF46689 198 246 9.86E-6 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_12755 8c58e7ee231b125df9a4376e20e60f10 308 Pfam PF12833 Helix-turn-helix domain 217 295 2.8E-20 T 17-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VI35_12755 8c58e7ee231b125df9a4376e20e60f10 308 SMART SM00342 211 294 1.2E-24 T 17-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VI35_14505 f11db694b7294e0006927e209d4391bb 431 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 22 416 1.6E-110 T 17-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 VI35_14505 f11db694b7294e0006927e209d4391bb 431 Pfam PF00860 Permease family 25 390 1.9E-93 T 17-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 VI35_14505 f11db694b7294e0006927e209d4391bb 431 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 340 360 - T 17-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 VI35_18085 c44690d6e103419d01b22e330297d888 420 Pfam PF02447 GntP family permease 9 414 5.5E-24 T 17-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 VI35_02860 61031241ec9fdc17f4e2938296d2d90a 114 SUPERFAMILY SSF54523 31 112 9.81E-27 T 17-10-2018 VI35_02860 61031241ec9fdc17f4e2938296d2d90a 114 TIGRFAM TIGR01707 gspI: type II secretion system protein I 1 98 4.3E-28 T 17-10-2018 IPR010052 Type II secretion system protein I GO:0008565|GO:0015627|GO:0015628 VI35_02860 61031241ec9fdc17f4e2938296d2d90a 114 Pfam PF02501 Type II secretion system (T2SS), protein I 34 112 4.7E-27 T 17-10-2018 IPR003413 Type II secretion system protein I domain GO:0008565|GO:0015627|GO:0015628 VI35_02860 61031241ec9fdc17f4e2938296d2d90a 114 Gene3D G3DSA:3.30.1300.30 26 114 2.2E-32 T 17-10-2018 VI35_02860 61031241ec9fdc17f4e2938296d2d90a 114 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 1 20 0.0013 T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_04380 a1e6c4e12a8a197c5b61081a6c266e21 341 Gene3D G3DSA:1.10.3720.10 103 331 1.2E-17 T 17-10-2018 IPR035906 MetI-like superfamily VI35_04380 a1e6c4e12a8a197c5b61081a6c266e21 341 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 132 338 1.1E-34 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_04380 a1e6c4e12a8a197c5b61081a6c266e21 341 SUPERFAMILY SSF161098 106 326 2.22E-14 T 17-10-2018 IPR035906 MetI-like superfamily VI35_16605 2c17d16bf5526914f03e09fd70bb798c 157 Gene3D G3DSA:3.40.50.300 2 154 1.0E-48 T 17-10-2018 VI35_16605 2c17d16bf5526914f03e09fd70bb798c 157 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 10 135 2.3E-41 T 17-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 VI35_16605 2c17d16bf5526914f03e09fd70bb798c 157 SUPERFAMILY SSF52540 29 151 1.77E-22 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_16605 2c17d16bf5526914f03e09fd70bb798c 157 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 9 140 8.9E-50 T 17-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 VI35_07480 6a7e4c9c73ac49558c377c21dd43c458 334 TIGRFAM TIGR03589 PseB: UDP-N-acetylglucosamine 4,6-dehydratase (inverting) 1 327 3.0E-166 T 17-10-2018 IPR020025 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) KEGG: 00520+4.2.1.115|MetaCyc: PWY-6143|MetaCyc: PWY-7330|MetaCyc: PWY-7331|MetaCyc: PWY-7332|MetaCyc: PWY-7719 VI35_07480 6a7e4c9c73ac49558c377c21dd43c458 334 Gene3D G3DSA:3.90.25.30 167 315 1.8E-134 T 17-10-2018 VI35_07480 6a7e4c9c73ac49558c377c21dd43c458 334 Pfam PF02719 Polysaccharide biosynthesis protein 7 279 5.0E-104 T 17-10-2018 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain VI35_07480 6a7e4c9c73ac49558c377c21dd43c458 334 Gene3D G3DSA:3.40.50.720 5 311 1.8E-134 T 17-10-2018 VI35_07480 6a7e4c9c73ac49558c377c21dd43c458 334 SUPERFAMILY SSF51735 1 266 1.85E-47 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_00425 8504e5c231142386daf95640982bf677 55 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 55 3.3E-26 T 17-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_00425 8504e5c231142386daf95640982bf677 55 SUPERFAMILY SSF57829 1 53 9.77E-19 T 17-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 VI35_00425 8504e5c231142386daf95640982bf677 55 ProSitePatterns PS00582 Ribosomal protein L33 signature. 21 40 - T 17-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_00425 8504e5c231142386daf95640982bf677 55 Pfam PF00471 Ribosomal protein L33 8 53 6.2E-17 T 17-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_00425 8504e5c231142386daf95640982bf677 55 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 5 53 14.824 T 17-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_00425 8504e5c231142386daf95640982bf677 55 Gene3D G3DSA:2.20.28.120 1 55 1.1E-29 T 17-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_14205 37e44683c13a895bed558fea0893698e 548 SMART SM00028 241 274 25.0 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_14205 37e44683c13a895bed558fea0893698e 548 SMART SM00028 456 489 0.02 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_14205 37e44683c13a895bed558fea0893698e 548 SMART SM00028 275 308 54.0 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_14205 37e44683c13a895bed558fea0893698e 548 SMART SM00028 207 240 27.0 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_14205 37e44683c13a895bed558fea0893698e 548 Pfam PF13432 Tetratricopeptide repeat 461 503 0.0079 T 17-10-2018 VI35_14205 37e44683c13a895bed558fea0893698e 548 Pfam PF00072 Response regulator receiver domain 19 129 1.2E-15 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_14205 37e44683c13a895bed558fea0893698e 548 Gene3D G3DSA:1.25.40.10 441 510 1.5E-5 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_14205 37e44683c13a895bed558fea0893698e 548 SUPERFAMILY SSF48452 447 503 3.8E-5 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_14205 37e44683c13a895bed558fea0893698e 548 Pfam PF14559 Tetratricopeptide repeat 223 273 3.2E-6 T 17-10-2018 VI35_14205 37e44683c13a895bed558fea0893698e 548 Gene3D G3DSA:3.40.50.2300 7 148 1.9E-21 T 17-10-2018 VI35_14205 37e44683c13a895bed558fea0893698e 548 SUPERFAMILY SSF48452 179 299 3.08E-17 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_14205 37e44683c13a895bed558fea0893698e 548 Gene3D G3DSA:1.25.40.10 153 358 2.2E-19 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_14205 37e44683c13a895bed558fea0893698e 548 SUPERFAMILY SSF52172 15 147 5.83E-23 T 17-10-2018 IPR011006 CheY-like superfamily VI35_14205 37e44683c13a895bed558fea0893698e 548 SMART SM00448 17 133 4.7E-18 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_01350 cd8d53d0857537191d47da4a0da220e7 124 Pfam PF00164 Ribosomal protein S12/S23 14 123 5.5E-43 T 17-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_01350 cd8d53d0857537191d47da4a0da220e7 124 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 124 4.5E-70 T 17-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_01350 cd8d53d0857537191d47da4a0da220e7 124 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 17-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_01350 cd8d53d0857537191d47da4a0da220e7 124 PIRSF PIRSF002133 1 124 5.0E-54 T 17-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_01350 cd8d53d0857537191d47da4a0da220e7 124 SUPERFAMILY SSF50249 3 123 1.8E-52 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_01350 cd8d53d0857537191d47da4a0da220e7 124 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 38.783 T 17-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_01350 cd8d53d0857537191d47da4a0da220e7 124 PRINTS PR01034 Ribosomal protein S12 signature 110 122 2.2E-60 T 17-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_01350 cd8d53d0857537191d47da4a0da220e7 124 PRINTS PR01034 Ribosomal protein S12 signature 94 110 2.2E-60 T 17-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_01350 cd8d53d0857537191d47da4a0da220e7 124 PRINTS PR01034 Ribosomal protein S12 signature 77 94 2.2E-60 T 17-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_01350 cd8d53d0857537191d47da4a0da220e7 124 PRINTS PR01034 Ribosomal protein S12 signature 58 77 2.2E-60 T 17-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_01350 cd8d53d0857537191d47da4a0da220e7 124 PRINTS PR01034 Ribosomal protein S12 signature 27 42 2.2E-60 T 17-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_01350 cd8d53d0857537191d47da4a0da220e7 124 PRINTS PR01034 Ribosomal protein S12 signature 42 57 2.2E-60 T 17-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_01350 cd8d53d0857537191d47da4a0da220e7 124 Gene3D G3DSA:2.40.50.140 1 124 2.3E-63 T 17-10-2018 VI35_08070 3cd6c7ad494085ba90bc097990c476f3 539 SUPERFAMILY SSF58104 229 538 9.94E-71 T 17-10-2018 VI35_08070 3cd6c7ad494085ba90bc097990c476f3 539 Gene3D G3DSA:1.10.287.950 208 539 3.6E-70 T 17-10-2018 VI35_08070 3cd6c7ad494085ba90bc097990c476f3 539 SMART SM00304 208 261 3.8E-5 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_08070 3cd6c7ad494085ba90bc097990c476f3 539 SMART SM00304 478 534 11.0 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_08070 3cd6c7ad494085ba90bc097990c476f3 539 SMART SM00283 276 537 3.1E-67 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_08070 3cd6c7ad494085ba90bc097990c476f3 539 Pfam PF12729 Four helix bundle sensory module for signal transduction 1 179 1.4E-25 T 17-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain VI35_08070 3cd6c7ad494085ba90bc097990c476f3 539 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 323 504 1.7E-42 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_20955 bce47393d7733bbead879227ce0bdfff 855 Gene3D G3DSA:3.30.450.40 1 163 6.1E-8 T 17-10-2018 IPR029016 GAF-like domain superfamily VI35_20955 bce47393d7733bbead879227ce0bdfff 855 Pfam PF13426 PAS domain 308 409 6.3E-15 T 17-10-2018 IPR000014 PAS domain VI35_20955 bce47393d7733bbead879227ce0bdfff 855 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 419 573 1.8E-30 T 17-10-2018 IPR000160 GGDEF domain VI35_20955 bce47393d7733bbead879227ce0bdfff 855 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 300 416 1.2E-19 T 17-10-2018 IPR000014 PAS domain VI35_20955 bce47393d7733bbead879227ce0bdfff 855 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 174 296 2.1E-22 T 17-10-2018 IPR000014 PAS domain VI35_20955 bce47393d7733bbead879227ce0bdfff 855 Pfam PF08447 PAS fold 197 280 7.7E-13 T 17-10-2018 IPR013655 PAS fold-3 GO:0005515 VI35_20955 bce47393d7733bbead879227ce0bdfff 855 SUPERFAMILY SSF55073 426 573 3.3E-41 T 17-10-2018 IPR029787 Nucleotide cyclase VI35_20955 bce47393d7733bbead879227ce0bdfff 855 Gene3D G3DSA:3.30.70.270 415 590 4.9E-47 T 17-10-2018 VI35_20955 bce47393d7733bbead879227ce0bdfff 855 SUPERFAMILY SSF55785 168 283 1.4E-21 T 17-10-2018 IPR035965 PAS domain superfamily VI35_20955 bce47393d7733bbead879227ce0bdfff 855 Gene3D G3DSA:3.30.450.20 299 412 1.6E-30 T 17-10-2018 VI35_20955 bce47393d7733bbead879227ce0bdfff 855 SUPERFAMILY SSF55785 308 417 1.18E-24 T 17-10-2018 IPR035965 PAS domain superfamily VI35_20955 bce47393d7733bbead879227ce0bdfff 855 SMART SM00086 369 410 5.7 T 17-10-2018 IPR001610 PAC motif VI35_20955 bce47393d7733bbead879227ce0bdfff 855 SMART SM00086 247 289 6.8E-6 T 17-10-2018 IPR001610 PAC motif VI35_20955 bce47393d7733bbead879227ce0bdfff 855 SMART SM00052 587 834 9.8E-91 T 17-10-2018 IPR001633 EAL domain VI35_20955 bce47393d7733bbead879227ce0bdfff 855 SMART SM00267 410 578 1.7E-45 T 17-10-2018 IPR000160 GGDEF domain VI35_20955 bce47393d7733bbead879227ce0bdfff 855 SMART SM00065 19 164 0.0015 T 17-10-2018 IPR003018 GAF domain GO:0005515 VI35_20955 bce47393d7733bbead879227ce0bdfff 855 SMART SM00091 297 363 5.3E-7 T 17-10-2018 IPR000014 PAS domain VI35_20955 bce47393d7733bbead879227ce0bdfff 855 SMART SM00091 174 240 2.1E-10 T 17-10-2018 IPR000014 PAS domain VI35_20955 bce47393d7733bbead879227ce0bdfff 855 Gene3D G3DSA:3.30.450.20 164 298 4.6E-22 T 17-10-2018 VI35_20955 bce47393d7733bbead879227ce0bdfff 855 SUPERFAMILY SSF55781 24 166 6.21E-12 T 17-10-2018 VI35_20955 bce47393d7733bbead879227ce0bdfff 855 Pfam PF00563 EAL domain 594 829 8.0E-69 T 17-10-2018 IPR001633 EAL domain VI35_20955 bce47393d7733bbead879227ce0bdfff 855 Gene3D G3DSA:3.20.20.450 591 850 8.0E-88 T 17-10-2018 IPR035919 EAL domain superfamily VI35_20955 bce47393d7733bbead879227ce0bdfff 855 SUPERFAMILY SSF141868 593 839 1.11E-81 T 17-10-2018 IPR035919 EAL domain superfamily VI35_20955 bce47393d7733bbead879227ce0bdfff 855 Pfam PF00990 Diguanylate cyclase, GGDEF domain 421 572 6.0E-37 T 17-10-2018 IPR000160 GGDEF domain VI35_06990 c62d07008b4028c0702d97daa590f39f 348 ProSitePatterns PS00094 C-5 cytosine-specific DNA methylases active site. 76 88 - T 17-10-2018 IPR018117 DNA methylase, C-5 cytosine-specific, active site KEGG: 00270+2.1.1.37|Reactome: R-HSA-212300|Reactome: R-HSA-4655427|Reactome: R-HSA-5334118 VI35_06990 c62d07008b4028c0702d97daa590f39f 348 Gene3D G3DSA:3.40.50.150 11 331 8.6E-84 T 17-10-2018 VI35_06990 c62d07008b4028c0702d97daa590f39f 348 Gene3D G3DSA:3.90.120.10 155 327 8.6E-84 T 17-10-2018 VI35_06990 c62d07008b4028c0702d97daa590f39f 348 ProSitePatterns PS00095 C-5 cytosine-specific DNA methylases C-terminal signature. 320 338 - T 17-10-2018 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site KEGG: 00270+2.1.1.37 VI35_06990 c62d07008b4028c0702d97daa590f39f 348 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 9 25 2.8E-10 T 17-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 VI35_06990 c62d07008b4028c0702d97daa590f39f 348 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 115 129 2.8E-10 T 17-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 VI35_06990 c62d07008b4028c0702d97daa590f39f 348 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 159 172 2.8E-10 T 17-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 VI35_06990 c62d07008b4028c0702d97daa590f39f 348 Pfam PF00145 C-5 cytosine-specific DNA methylase 10 339 4.4E-58 T 17-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 VI35_06990 c62d07008b4028c0702d97daa590f39f 348 SUPERFAMILY SSF53335 9 338 1.63E-84 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_06990 c62d07008b4028c0702d97daa590f39f 348 TIGRFAM TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase 11 338 2.5E-46 T 17-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 VI35_00160 289c8d1edba4f852452e78f1f9a73fb3 705 Gene3D G3DSA:3.10.20.30 382 456 6.5E-28 T 17-10-2018 IPR012675 Beta-grasp domain superfamily VI35_00160 289c8d1edba4f852452e78f1f9a73fb3 705 Gene3D G3DSA:1.10.3210.10 2 190 3.9E-79 T 17-10-2018 VI35_00160 289c8d1edba4f852452e78f1f9a73fb3 705 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 26 701 4.1E-260 T 17-10-2018 IPR004811 RelA/SpoT family GO:0015969 VI35_00160 289c8d1edba4f852452e78f1f9a73fb3 705 SUPERFAMILY SSF109604 3 190 9.42E-74 T 17-10-2018 VI35_00160 289c8d1edba4f852452e78f1f9a73fb3 705 SMART SM00954 235 345 1.3E-59 T 17-10-2018 IPR007685 RelA/SpoT GO:0015969 VI35_00160 289c8d1edba4f852452e78f1f9a73fb3 705 SMART SM00471 41 153 8.9E-10 T 17-10-2018 IPR003607 HD/PDEase domain VI35_00160 289c8d1edba4f852452e78f1f9a73fb3 705 Pfam PF13291 ACT domain 625 702 2.7E-14 T 17-10-2018 IPR002912 ACT domain VI35_00160 289c8d1edba4f852452e78f1f9a73fb3 705 SUPERFAMILY SSF55021 628 702 5.34E-8 T 17-10-2018 VI35_00160 289c8d1edba4f852452e78f1f9a73fb3 705 Pfam PF04607 Region found in RelA / SpoT proteins 235 345 5.3E-35 T 17-10-2018 IPR007685 RelA/SpoT GO:0015969 VI35_00160 289c8d1edba4f852452e78f1f9a73fb3 705 Gene3D G3DSA:3.30.460.10 194 325 7.9E-46 T 17-10-2018 VI35_00160 289c8d1edba4f852452e78f1f9a73fb3 705 Pfam PF13328 HD domain 26 175 7.5E-53 T 17-10-2018 IPR003607 HD/PDEase domain VI35_00160 289c8d1edba4f852452e78f1f9a73fb3 705 Gene3D G3DSA:3.30.70.260 626 705 2.7E-13 T 17-10-2018 VI35_00160 289c8d1edba4f852452e78f1f9a73fb3 705 SUPERFAMILY SSF81301 192 365 1.63E-59 T 17-10-2018 VI35_00160 289c8d1edba4f852452e78f1f9a73fb3 705 SUPERFAMILY SSF81271 376 448 1.98E-19 T 17-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 VI35_00160 289c8d1edba4f852452e78f1f9a73fb3 705 Pfam PF02824 TGS domain 389 448 1.3E-17 T 17-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 VI35_14085 8f3a37ee035f390be4134185b8fd5303 297 Pfam PF03466 LysR substrate binding domain 90 294 1.7E-51 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_14085 8f3a37ee035f390be4134185b8fd5303 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 65 1.2E-19 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_14085 8f3a37ee035f390be4134185b8fd5303 297 Gene3D G3DSA:3.40.190.10 165 265 2.9E-72 T 17-10-2018 VI35_14085 8f3a37ee035f390be4134185b8fd5303 297 Gene3D G3DSA:3.40.190.10 94 291 2.9E-72 T 17-10-2018 VI35_14085 8f3a37ee035f390be4134185b8fd5303 297 SUPERFAMILY SSF46785 8 113 3.01E-21 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_14085 8f3a37ee035f390be4134185b8fd5303 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 9.0E-5 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_14085 8f3a37ee035f390be4134185b8fd5303 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 9.0E-5 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_14085 8f3a37ee035f390be4134185b8fd5303 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 9.0E-5 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_14085 8f3a37ee035f390be4134185b8fd5303 297 Gene3D G3DSA:1.10.10.10 6 93 7.4E-25 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_14085 8f3a37ee035f390be4134185b8fd5303 297 SUPERFAMILY SSF53850 92 294 9.31E-51 T 17-10-2018 VI35_05350 1ad6f3de5a6e6757ca1c51d2965fe514 298 Gene3D G3DSA:1.10.10.10 1 84 1.6E-28 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_05350 1ad6f3de5a6e6757ca1c51d2965fe514 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 2.6E-19 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_05350 1ad6f3de5a6e6757ca1c51d2965fe514 298 Gene3D G3DSA:3.40.190.10 91 289 4.7E-65 T 17-10-2018 VI35_05350 1ad6f3de5a6e6757ca1c51d2965fe514 298 Pfam PF03466 LysR substrate binding domain 88 288 2.8E-46 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_05350 1ad6f3de5a6e6757ca1c51d2965fe514 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.1E-7 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_05350 1ad6f3de5a6e6757ca1c51d2965fe514 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.1E-7 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_05350 1ad6f3de5a6e6757ca1c51d2965fe514 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.1E-7 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_05350 1ad6f3de5a6e6757ca1c51d2965fe514 298 SUPERFAMILY SSF46785 1 111 2.08E-21 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_05350 1ad6f3de5a6e6757ca1c51d2965fe514 298 SUPERFAMILY SSF53850 88 295 8.22E-41 T 17-10-2018 VI35_05350 1ad6f3de5a6e6757ca1c51d2965fe514 298 Gene3D G3DSA:3.40.190.10 161 261 4.7E-65 T 17-10-2018 VI35_14075 a41c0af430652713a21d39d69b4c5adc 144 Pfam PF04657 Putative inner membrane exporter, YdcZ 3 132 2.5E-21 T 17-10-2018 IPR006750 Putative inner membrane exporter, YdcZ VI35_19550 6c542b84736139caeffd1b0d4ab05b9c 284 Pfam PF04545 Sigma-70, region 4 228 279 3.3E-16 T 17-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 VI35_19550 6c542b84736139caeffd1b0d4ab05b9c 284 Gene3D G3DSA:1.10.10.10 213 283 5.3E-16 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_19550 6c542b84736139caeffd1b0d4ab05b9c 284 Pfam PF00140 Sigma-70 factor, region 1.2 20 45 7.4E-6 T 17-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VI35_19550 6c542b84736139caeffd1b0d4ab05b9c 284 SUPERFAMILY SSF88946 14 123 3.27E-40 T 17-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 VI35_19550 6c542b84736139caeffd1b0d4ab05b9c 284 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 49 282 7.3E-38 T 17-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 VI35_19550 6c542b84736139caeffd1b0d4ab05b9c 284 Gene3D G3DSA:1.20.120.1810 5 123 5.8E-29 T 17-10-2018 VI35_19550 6c542b84736139caeffd1b0d4ab05b9c 284 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 252 278 - T 17-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VI35_19550 6c542b84736139caeffd1b0d4ab05b9c 284 SUPERFAMILY SSF88659 197 282 4.3E-20 T 17-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VI35_19550 6c542b84736139caeffd1b0d4ab05b9c 284 Pfam PF04542 Sigma-70 region 2 54 123 2.7E-17 T 17-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 VI35_19550 6c542b84736139caeffd1b0d4ab05b9c 284 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 15 283 9.9E-128 T 17-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 VI35_19550 6c542b84736139caeffd1b0d4ab05b9c 284 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 78 91 - T 17-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VI35_19550 6c542b84736139caeffd1b0d4ab05b9c 284 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 3 284 52.918 T 17-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 VI35_19550 6c542b84736139caeffd1b0d4ab05b9c 284 PRINTS PR00046 Major sigma-70 factor signature 267 278 7.3E-19 T 17-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VI35_19550 6c542b84736139caeffd1b0d4ab05b9c 284 PRINTS PR00046 Major sigma-70 factor signature 232 244 7.3E-19 T 17-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VI35_19550 6c542b84736139caeffd1b0d4ab05b9c 284 PRINTS PR00046 Major sigma-70 factor signature 252 267 7.3E-19 T 17-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VI35_19550 6c542b84736139caeffd1b0d4ab05b9c 284 PRINTS PR00046 Major sigma-70 factor signature 78 91 7.3E-19 T 17-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VI35_19550 6c542b84736139caeffd1b0d4ab05b9c 284 PIRSF PIRSF000770 18 284 3.3E-34 T 17-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VI35_12300 7034a906407a97fba93eb05c6aeabb19 263 Pfam PF13181 Tetratricopeptide repeat 151 183 0.18 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_12300 7034a906407a97fba93eb05c6aeabb19 263 Pfam PF14559 Tetratricopeptide repeat 58 102 1.4E-5 T 17-10-2018 VI35_12300 7034a906407a97fba93eb05c6aeabb19 263 TIGRFAM TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW 13 250 1.7E-69 T 17-10-2018 IPR013360 Pilus biogenesis/stability type IV, PilW VI35_12300 7034a906407a97fba93eb05c6aeabb19 263 SMART SM00028 115 148 23.0 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_12300 7034a906407a97fba93eb05c6aeabb19 263 SMART SM00028 151 184 5.0 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_12300 7034a906407a97fba93eb05c6aeabb19 263 SMART SM00028 47 80 0.0081 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_12300 7034a906407a97fba93eb05c6aeabb19 263 SMART SM00028 81 114 0.0028 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_12300 7034a906407a97fba93eb05c6aeabb19 263 Pfam PF13431 Tetratricopeptide repeat 104 136 5.3E-9 T 17-10-2018 VI35_12300 7034a906407a97fba93eb05c6aeabb19 263 SUPERFAMILY SSF48452 47 214 3.32E-26 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_12300 7034a906407a97fba93eb05c6aeabb19 263 Gene3D G3DSA:1.25.40.10 44 261 2.2E-47 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_13025 c01b7c86487fa82cc7dd5a9759502d98 253 Gene3D G3DSA:3.40.50.300 1 251 2.1E-72 T 17-10-2018 VI35_13025 c01b7c86487fa82cc7dd5a9759502d98 253 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_13025 c01b7c86487fa82cc7dd5a9759502d98 253 SUPERFAMILY SSF52540 1 236 1.6E-72 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_13025 c01b7c86487fa82cc7dd5a9759502d98 253 PIRSF PIRSF039085 1 245 1.2E-97 T 17-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 VI35_13025 c01b7c86487fa82cc7dd5a9759502d98 253 Pfam PF00005 ABC transporter 17 169 1.0E-33 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_13025 c01b7c86487fa82cc7dd5a9759502d98 253 SMART SM00382 26 217 5.1E-18 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_01100 09a2e28b257c11a6f0aa8cc60aaed498 437 Hamap MF_01845 UPF0597 protein YhaM [yhaM]. 11 430 35.874 T 17-10-2018 IPR021144 Uncharacterised protein family UPF0597 VI35_01100 09a2e28b257c11a6f0aa8cc60aaed498 437 Pfam PF03313 Serine dehydratase alpha chain 94 425 3.5E-51 T 17-10-2018 IPR005130 Serine dehydratase-like, alpha subunit VI35_01100 09a2e28b257c11a6f0aa8cc60aaed498 437 PIRSF PIRSF006054 7 432 2.1E-155 T 17-10-2018 IPR021144 Uncharacterised protein family UPF0597 VI35_13660 4fd3f1c5040b32dea9f880ae8cf394b4 274 Pfam PF01739 CheR methyltransferase, SAM binding domain 74 268 5.5E-62 T 17-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal VI35_13660 4fd3f1c5040b32dea9f880ae8cf394b4 274 SUPERFAMILY SSF47757 3 73 1.7E-14 T 17-10-2018 VI35_13660 4fd3f1c5040b32dea9f880ae8cf394b4 274 Gene3D G3DSA:1.10.155.10 1 72 1.0E-9 T 17-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily VI35_13660 4fd3f1c5040b32dea9f880ae8cf394b4 274 SUPERFAMILY SSF53335 74 268 1.41E-46 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_13660 4fd3f1c5040b32dea9f880ae8cf394b4 274 PRINTS PR00996 Glutamate methyltransferase family signature 211 225 5.0E-43 T 17-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VI35_13660 4fd3f1c5040b32dea9f880ae8cf394b4 274 PRINTS PR00996 Glutamate methyltransferase family signature 230 253 5.0E-43 T 17-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VI35_13660 4fd3f1c5040b32dea9f880ae8cf394b4 274 PRINTS PR00996 Glutamate methyltransferase family signature 104 124 5.0E-43 T 17-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VI35_13660 4fd3f1c5040b32dea9f880ae8cf394b4 274 PRINTS PR00996 Glutamate methyltransferase family signature 28 41 5.0E-43 T 17-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VI35_13660 4fd3f1c5040b32dea9f880ae8cf394b4 274 PRINTS PR00996 Glutamate methyltransferase family signature 67 79 5.0E-43 T 17-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VI35_13660 4fd3f1c5040b32dea9f880ae8cf394b4 274 PRINTS PR00996 Glutamate methyltransferase family signature 142 158 5.0E-43 T 17-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VI35_13660 4fd3f1c5040b32dea9f880ae8cf394b4 274 Pfam PF03705 CheR methyltransferase, all-alpha domain 9 52 2.6E-11 T 17-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal VI35_13660 4fd3f1c5040b32dea9f880ae8cf394b4 274 Gene3D G3DSA:3.40.50.150 73 273 8.0E-58 T 17-10-2018 VI35_13660 4fd3f1c5040b32dea9f880ae8cf394b4 274 SMART SM00138 6 271 1.1E-110 T 17-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VI35_00605 42f45a0cea741d134b803fcf8e9825ed 613 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 17-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 VI35_00605 42f45a0cea741d134b803fcf8e9825ed 613 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 607 1.8E-260 T 17-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 VI35_00605 42f45a0cea741d134b803fcf8e9825ed 613 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 607 45.2 T 17-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 VI35_00605 42f45a0cea741d134b803fcf8e9825ed 613 Gene3D G3DSA:3.50.30.80 421 572 2.2E-55 T 17-10-2018 VI35_00605 42f45a0cea741d134b803fcf8e9825ed 613 Pfam PF00920 Dehydratase family 34 604 1.2E-218 T 17-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 VI35_00605 42f45a0cea741d134b803fcf8e9825ed 613 SUPERFAMILY SSF52016 421 608 1.65E-59 T 17-10-2018 VI35_00605 42f45a0cea741d134b803fcf8e9825ed 613 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 509 520 - T 17-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 VI35_00605 42f45a0cea741d134b803fcf8e9825ed 613 SUPERFAMILY SSF143975 3 420 2.35E-135 T 17-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 VI35_03965 15626f4dae7b8bcd778ba8de1103909d 184 Gene3D G3DSA:3.40.630.30 3 177 3.6E-50 T 17-10-2018 VI35_03965 15626f4dae7b8bcd778ba8de1103909d 184 SUPERFAMILY SSF55729 7 175 1.45E-45 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_03965 15626f4dae7b8bcd778ba8de1103909d 184 Pfam PF13302 Acetyltransferase (GNAT) domain 15 150 2.6E-23 T 17-10-2018 IPR000182 GNAT domain VI35_18275 326e771d79aa2becac4ee7f243157f3f 160 Gene3D G3DSA:1.20.120.1370 1 151 1.3E-49 T 17-10-2018 IPR038309 Rsd/AlgQ superfamily VI35_18275 326e771d79aa2becac4ee7f243157f3f 160 Pfam PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ 1 149 5.9E-53 T 17-10-2018 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 VI35_18275 326e771d79aa2becac4ee7f243157f3f 160 PIRSF PIRSF016548 1 160 6.0E-48 T 17-10-2018 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 VI35_09140 07a885f148f486555e26e5ae73cc0445 393 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 42 376 1.0E-78 T 17-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VI35_09140 07a885f148f486555e26e5ae73cc0445 393 Gene3D G3DSA:2.40.420.20 306 375 2.4E-94 T 17-10-2018 VI35_09140 07a885f148f486555e26e5ae73cc0445 393 SUPERFAMILY SSF111369 55 302 1.96E-65 T 17-10-2018 VI35_09140 07a885f148f486555e26e5ae73cc0445 393 Gene3D G3DSA:2.40.30.170 52 305 2.4E-94 T 17-10-2018 VI35_09140 07a885f148f486555e26e5ae73cc0445 393 Pfam PF13533 Biotin-lipoyl like 67 114 2.8E-15 T 17-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VI35_09140 07a885f148f486555e26e5ae73cc0445 393 Gene3D G3DSA:2.40.50.100 66 211 2.4E-94 T 17-10-2018 VI35_09140 07a885f148f486555e26e5ae73cc0445 393 Gene3D G3DSA:1.10.287.470 101 174 2.4E-94 T 17-10-2018 VI35_08880 be9f8cdd2e0861279dab78f0311f13a8 61 Pfam PF14549 DNA-binding transcriptional regulator Cro 2 54 2.1E-21 T 17-10-2018 VI35_08880 be9f8cdd2e0861279dab78f0311f13a8 61 SUPERFAMILY SSF47413 1 55 7.03E-14 T 17-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VI35_08880 be9f8cdd2e0861279dab78f0311f13a8 61 Gene3D G3DSA:1.10.260.40 1 59 4.2E-23 T 17-10-2018 VI35_02900 e383eefc1d83435091055102a5b64ea9 301 SUPERFAMILY SSF53850 96 299 1.23E-38 T 17-10-2018 VI35_02900 e383eefc1d83435091055102a5b64ea9 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 68 6.5E-20 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_02900 e383eefc1d83435091055102a5b64ea9 301 Gene3D G3DSA:1.10.10.10 8 94 2.4E-21 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_02900 e383eefc1d83435091055102a5b64ea9 301 Pfam PF03466 LysR substrate binding domain 94 298 2.2E-39 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_02900 e383eefc1d83435091055102a5b64ea9 301 SUPERFAMILY SSF46785 7 116 6.13E-23 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_02900 e383eefc1d83435091055102a5b64ea9 301 Gene3D G3DSA:3.40.190.290 96 298 4.8E-51 T 17-10-2018 VI35_01605 e7caa28c3544823010b095625af6296c 303 Pfam PF02311 AraC-like ligand binding domain 43 173 4.0E-6 T 17-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 VI35_01605 e7caa28c3544823010b095625af6296c 303 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 247 289 - T 17-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VI35_01605 e7caa28c3544823010b095625af6296c 303 Gene3D G3DSA:1.10.10.60 190 298 8.0E-26 T 17-10-2018 VI35_01605 e7caa28c3544823010b095625af6296c 303 Pfam PF12833 Helix-turn-helix domain 216 294 2.2E-22 T 17-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VI35_01605 e7caa28c3544823010b095625af6296c 303 SUPERFAMILY SSF46689 246 296 1.16E-11 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_01605 e7caa28c3544823010b095625af6296c 303 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 277 293 4.2E-6 T 17-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VI35_01605 e7caa28c3544823010b095625af6296c 303 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 262 277 4.2E-6 T 17-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VI35_01605 e7caa28c3544823010b095625af6296c 303 SMART SM00342 210 293 8.8E-29 T 17-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VI35_01605 e7caa28c3544823010b095625af6296c 303 SUPERFAMILY SSF51215 34 171 5.75E-9 T 17-10-2018 IPR037923 Transcription regulator HTH-like VI35_15125 cbcd375dcc64e6f8957c0f124a6e1329 247 PIRSF PIRSF039085 3 246 5.1E-108 T 17-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 VI35_15125 cbcd375dcc64e6f8957c0f124a6e1329 247 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_15125 cbcd375dcc64e6f8957c0f124a6e1329 247 Gene3D G3DSA:3.40.50.300 4 247 1.4E-77 T 17-10-2018 VI35_15125 cbcd375dcc64e6f8957c0f124a6e1329 247 SUPERFAMILY SSF52540 6 240 3.34E-80 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_15125 cbcd375dcc64e6f8957c0f124a6e1329 247 Pfam PF00005 ABC transporter 22 170 1.9E-37 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_15125 cbcd375dcc64e6f8957c0f124a6e1329 247 SMART SM00382 31 218 7.7E-13 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_16715 75ae270fce2d1826f86acd7fb2e8b8aa 372 Gene3D G3DSA:3.30.310.170 246 369 8.5E-28 T 17-10-2018 VI35_16715 75ae270fce2d1826f86acd7fb2e8b8aa 372 Hamap MF_00924 Outer membrane protein assembly factor BamC [bamC]. 9 363 36.711 T 17-10-2018 IPR014524 Outer membrane protein assembly factor BamC VI35_16715 75ae270fce2d1826f86acd7fb2e8b8aa 372 Gene3D G3DSA:3.30.530.50 112 234 3.5E-5 T 17-10-2018 VI35_16715 75ae270fce2d1826f86acd7fb2e8b8aa 372 Pfam PF06804 NlpB/DapX lipoprotein 48 362 4.8E-95 T 17-10-2018 IPR010653 NlpB/DapX lipoprotein VI35_10740 c73f6a4fb5b9fd0f6f389ebb6e854468 360 SUPERFAMILY SSF117916 4 73 5.56E-7 T 17-10-2018 IPR034904 Fe-S cluster assembly domain superfamily VI35_10740 c73f6a4fb5b9fd0f6f389ebb6e854468 360 Pfam PF01883 Iron-sulfur cluster assembly protein 19 73 4.3E-6 T 17-10-2018 IPR002744 MIP18 family-like VI35_10740 c73f6a4fb5b9fd0f6f389ebb6e854468 360 ProSitePatterns PS01215 Mrp family signature. 202 218 - T 17-10-2018 IPR000808 Mrp, conserved site GO:0005524 VI35_10740 c73f6a4fb5b9fd0f6f389ebb6e854468 360 SUPERFAMILY SSF52540 89 320 6.64E-55 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_10740 c73f6a4fb5b9fd0f6f389ebb6e854468 360 Hamap MF_02040 Iron-sulfur cluster carrier protein. 87 339 35.58 T 17-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein VI35_10740 c73f6a4fb5b9fd0f6f389ebb6e854468 360 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 95 338 2.6E-98 T 17-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 VI35_10740 c73f6a4fb5b9fd0f6f389ebb6e854468 360 Gene3D G3DSA:3.40.50.300 85 334 2.6E-80 T 17-10-2018 VI35_12485 32d8f69892de193363a70afc91fb0648 124 Gene3D G3DSA:1.10.20.30 9 61 3.0E-17 T 17-10-2018 VI35_12485 32d8f69892de193363a70afc91fb0648 124 SUPERFAMILY SSF102829 20 108 1.7E-24 T 17-10-2018 IPR036192 Cell division protein ZapA-like superfamily VI35_12485 32d8f69892de193363a70afc91fb0648 124 Pfam PF05164 Cell division protein ZapA 20 104 6.0E-21 T 17-10-2018 IPR007838 Cell division protein ZapA-like VI35_12485 32d8f69892de193363a70afc91fb0648 124 Gene3D G3DSA:1.20.5.50 63 117 1.6E-9 T 17-10-2018 VI35_19545 cdcc90331763968d79a3c05a2d2a0290 219 SMART SM00947 30 193 3.3E-74 T 17-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 VI35_19545 cdcc90331763968d79a3c05a2d2a0290 219 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 82 102 - T 17-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 VI35_19545 cdcc90331763968d79a3c05a2d2a0290 219 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 42 49 - T 17-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 VI35_19545 cdcc90331763968d79a3c05a2d2a0290 219 SUPERFAMILY SSF53056 3 204 8.37E-78 T 17-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 VI35_19545 cdcc90331763968d79a3c05a2d2a0290 219 Pfam PF00484 Carbonic anhydrase 37 188 9.6E-55 T 17-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 VI35_19545 cdcc90331763968d79a3c05a2d2a0290 219 Gene3D G3DSA:3.40.1050.10 1 209 1.6E-85 T 17-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 VI35_21225 8c1b8492663ce9598b0fca9369ccd48a 44 Pfam PF00468 Ribosomal protein L34 1 44 2.3E-25 T 17-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_21225 8c1b8492663ce9598b0fca9369ccd48a 44 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 2 26 1.0E-6 T 17-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_21225 8c1b8492663ce9598b0fca9369ccd48a 44 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 5.7E-27 T 17-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_21225 8c1b8492663ce9598b0fca9369ccd48a 44 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 16.669 T 17-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_21225 8c1b8492663ce9598b0fca9369ccd48a 44 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 17-10-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_07125 9e85d43fdc1b3f8aa367a0c378a4992c 451 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 35 417 9.2E-152 T 17-10-2018 VI35_07125 9e85d43fdc1b3f8aa367a0c378a4992c 451 Pfam PF07690 Major Facilitator Superfamily 34 400 3.1E-50 T 17-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VI35_07125 9e85d43fdc1b3f8aa367a0c378a4992c 451 Gene3D G3DSA:1.20.1250.20 240 444 6.9E-61 T 17-10-2018 VI35_07125 9e85d43fdc1b3f8aa367a0c378a4992c 451 SUPERFAMILY SSF103473 10 436 2.62E-85 T 17-10-2018 IPR036259 MFS transporter superfamily VI35_07125 9e85d43fdc1b3f8aa367a0c378a4992c 451 TIGRFAM TIGR00712 glpT: glycerol-3-phosphate transporter 1 438 1.9E-239 T 17-10-2018 IPR005267 Glycerol-3-phosphate transporter GO:0015169|GO:0015794|GO:0016021 VI35_07125 9e85d43fdc1b3f8aa367a0c378a4992c 451 ProSitePatterns PS00942 glpT family of transporters signature. 153 169 - T 17-10-2018 IPR021159 Glycerate/sugar phosphate transporter, conserved site Reactome: R-HSA-3229133|Reactome: R-HSA-70263 VI35_07125 9e85d43fdc1b3f8aa367a0c378a4992c 451 PIRSF PIRSF002808 5 451 2.3E-173 T 17-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 VI35_07125 9e85d43fdc1b3f8aa367a0c378a4992c 451 Gene3D G3DSA:1.20.1250.20 19 226 3.3E-57 T 17-10-2018 VI35_21130 92407d2a0086ca4da5922510f39458ee 177 Gene3D G3DSA:1.10.520.20 2 106 5.3E-37 T 17-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21130 92407d2a0086ca4da5922510f39458ee 177 PRINTS PR00125 ATP synthase delta subunit signature 150 168 2.8E-26 T 17-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21130 92407d2a0086ca4da5922510f39458ee 177 PRINTS PR00125 ATP synthase delta subunit signature 74 85 2.8E-26 T 17-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21130 92407d2a0086ca4da5922510f39458ee 177 PRINTS PR00125 ATP synthase delta subunit signature 7 26 2.8E-26 T 17-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21130 92407d2a0086ca4da5922510f39458ee 177 PRINTS PR00125 ATP synthase delta subunit signature 85 99 2.8E-26 T 17-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21130 92407d2a0086ca4da5922510f39458ee 177 PRINTS PR00125 ATP synthase delta subunit signature 135 150 2.8E-26 T 17-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21130 92407d2a0086ca4da5922510f39458ee 177 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 137 156 - T 17-10-2018 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21130 92407d2a0086ca4da5922510f39458ee 177 SUPERFAMILY SSF47928 3 105 3.92E-27 T 17-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21130 92407d2a0086ca4da5922510f39458ee 177 Hamap MF_01416 ATP synthase subunit delta [atpD]. 3 177 18.28 T 17-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21130 92407d2a0086ca4da5922510f39458ee 177 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 7 175 4.8E-57 T 17-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_21130 92407d2a0086ca4da5922510f39458ee 177 Pfam PF00213 ATP synthase delta (OSCP) subunit 7 175 8.4E-52 T 17-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VI35_17650 249c9e53b61bdfabb9134a9a436392a5 643 Pfam PF00563 EAL domain 381 614 4.1E-66 T 17-10-2018 IPR001633 EAL domain VI35_17650 249c9e53b61bdfabb9134a9a436392a5 643 Gene3D G3DSA:3.20.20.450 376 626 1.7E-85 T 17-10-2018 IPR035919 EAL domain superfamily VI35_17650 249c9e53b61bdfabb9134a9a436392a5 643 SMART SM00267 196 362 8.1E-33 T 17-10-2018 IPR000160 GGDEF domain VI35_17650 249c9e53b61bdfabb9134a9a436392a5 643 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 205 354 2.4E-22 T 17-10-2018 IPR000160 GGDEF domain VI35_17650 249c9e53b61bdfabb9134a9a436392a5 643 SUPERFAMILY SSF55073 211 356 7.85E-32 T 17-10-2018 IPR029787 Nucleotide cyclase VI35_17650 249c9e53b61bdfabb9134a9a436392a5 643 SUPERFAMILY SSF141868 378 626 2.75E-75 T 17-10-2018 IPR035919 EAL domain superfamily VI35_17650 249c9e53b61bdfabb9134a9a436392a5 643 SMART SM00052 372 619 1.1E-89 T 17-10-2018 IPR001633 EAL domain VI35_17650 249c9e53b61bdfabb9134a9a436392a5 643 Gene3D G3DSA:3.30.70.270 202 375 8.2E-37 T 17-10-2018 VI35_17650 249c9e53b61bdfabb9134a9a436392a5 643 Pfam PF00990 Diguanylate cyclase, GGDEF domain 206 355 2.1E-30 T 17-10-2018 IPR000160 GGDEF domain VI35_18475 ce734bc39ffbf9363b58f90dff5300b0 354 Hamap MF_00268 Protein RecA [recA]. 5 329 50.988 T 17-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 VI35_18475 ce734bc39ffbf9363b58f90dff5300b0 354 Gene3D G3DSA:3.40.50.300 26 267 2.0E-83 T 17-10-2018 VI35_18475 ce734bc39ffbf9363b58f90dff5300b0 354 Gene3D G3DSA:3.30.250.10 268 345 4.0E-23 T 17-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal VI35_18475 ce734bc39ffbf9363b58f90dff5300b0 354 SMART SM00382 57 228 1.1E-8 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_18475 ce734bc39ffbf9363b58f90dff5300b0 354 ProSitePatterns PS00321 recA signature. 213 221 - T 17-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 VI35_18475 ce734bc39ffbf9363b58f90dff5300b0 354 SUPERFAMILY SSF52540 4 267 6.51E-67 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_18475 ce734bc39ffbf9363b58f90dff5300b0 354 Pfam PF00154 recA bacterial DNA recombination protein 7 268 2.1E-145 T 17-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 VI35_18475 ce734bc39ffbf9363b58f90dff5300b0 354 SUPERFAMILY SSF54752 268 324 4.71E-19 T 17-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal VI35_18475 ce734bc39ffbf9363b58f90dff5300b0 354 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 4 324 6.2E-172 T 17-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 VI35_18475 ce734bc39ffbf9363b58f90dff5300b0 354 PRINTS PR00142 RecA protein signature 165 194 7.5E-81 T 17-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 VI35_18475 ce734bc39ffbf9363b58f90dff5300b0 354 PRINTS PR00142 RecA protein signature 93 122 7.5E-81 T 17-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 VI35_18475 ce734bc39ffbf9363b58f90dff5300b0 354 PRINTS PR00142 RecA protein signature 210 238 7.5E-81 T 17-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 VI35_18475 ce734bc39ffbf9363b58f90dff5300b0 354 PRINTS PR00142 RecA protein signature 243 272 7.5E-81 T 17-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 VI35_18475 ce734bc39ffbf9363b58f90dff5300b0 354 PRINTS PR00142 RecA protein signature 297 314 7.5E-81 T 17-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 VI35_18475 ce734bc39ffbf9363b58f90dff5300b0 354 PRINTS PR00142 RecA protein signature 127 156 7.5E-81 T 17-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 VI35_13420 68808a1e343e09c50f95245e1cf34eb9 459 Gene3D G3DSA:3.40.720.10 18 459 7.5E-143 T 17-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VI35_13420 68808a1e343e09c50f95245e1cf34eb9 459 Pfam PF00245 Alkaline phosphatase 29 458 3.6E-106 T 17-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 VI35_13420 68808a1e343e09c50f95245e1cf34eb9 459 SUPERFAMILY SSF53649 22 459 2.29E-129 T 17-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VI35_13420 68808a1e343e09c50f95245e1cf34eb9 459 PRINTS PR00113 Alkaline phosphatase signature 29 49 6.2E-41 T 17-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 VI35_13420 68808a1e343e09c50f95245e1cf34eb9 459 PRINTS PR00113 Alkaline phosphatase signature 139 159 6.2E-41 T 17-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 VI35_13420 68808a1e343e09c50f95245e1cf34eb9 459 PRINTS PR00113 Alkaline phosphatase signature 275 304 6.2E-41 T 17-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 VI35_13420 68808a1e343e09c50f95245e1cf34eb9 459 PRINTS PR00113 Alkaline phosphatase signature 193 203 6.2E-41 T 17-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 VI35_13420 68808a1e343e09c50f95245e1cf34eb9 459 SMART SM00098 30 459 1.3E-97 T 17-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 VI35_03145 d1079e5e38cc0cee51c11d9c5a343c79 719 Pfam PF05170 AsmA family 4 603 1.6E-76 T 17-10-2018 IPR007844 AsmA VI35_01840 a48b375bc1f91defb5eeabec0063003b 148 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 51 67 - T 17-10-2018 IPR002178 PTS EIIA type-2 domain VI35_01840 a48b375bc1f91defb5eeabec0063003b 148 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 6 146 1.3E-34 T 17-10-2018 IPR002178 PTS EIIA type-2 domain VI35_01840 a48b375bc1f91defb5eeabec0063003b 148 Gene3D G3DSA:3.40.930.10 1 148 4.5E-54 T 17-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VI35_01840 a48b375bc1f91defb5eeabec0063003b 148 TIGRFAM TIGR01419 nitro_reg_IIA: PTS IIA-like nitrogen-regulatory protein PtsN 2 146 6.0E-50 T 17-10-2018 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN GO:0008982|GO:0009401 VI35_01840 a48b375bc1f91defb5eeabec0063003b 148 SUPERFAMILY SSF55804 1 146 1.7E-40 T 17-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VI35_13485 00f3832a39da95aa52c359e16ed40ba3 236 Gene3D G3DSA:1.20.58.220 120 232 3.4E-37 T 17-10-2018 IPR038078 PhoU-like domain superfamily VI35_13485 00f3832a39da95aa52c359e16ed40ba3 236 SUPERFAMILY SSF109755 13 228 2.2E-70 T 17-10-2018 VI35_13485 00f3832a39da95aa52c359e16ed40ba3 236 PIRSF PIRSF003107 7 226 1.3E-70 T 17-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 VI35_13485 00f3832a39da95aa52c359e16ed40ba3 236 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 13 221 8.0E-75 T 17-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 VI35_13485 00f3832a39da95aa52c359e16ed40ba3 236 Gene3D G3DSA:1.20.58.220 1 119 6.1E-41 T 17-10-2018 IPR038078 PhoU-like domain superfamily VI35_13485 00f3832a39da95aa52c359e16ed40ba3 236 Pfam PF01895 PhoU domain 127 212 1.4E-17 T 17-10-2018 IPR026022 PhoU domain VI35_13485 00f3832a39da95aa52c359e16ed40ba3 236 Pfam PF01895 PhoU domain 28 112 4.3E-21 T 17-10-2018 IPR026022 PhoU domain VI35_12315 939a6649c75e8ddcb6ef44a72b922b72 427 Gene3D G3DSA:3.40.630.10 91 425 3.7E-96 T 17-10-2018 VI35_12315 939a6649c75e8ddcb6ef44a72b922b72 427 Pfam PF12404 Peptidase 1 76 9.9E-27 T 17-10-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 VI35_12315 939a6649c75e8ddcb6ef44a72b922b72 427 SUPERFAMILY SSF53187 103 423 1.7E-90 T 17-10-2018 VI35_12315 939a6649c75e8ddcb6ef44a72b922b72 427 PIRSF PIRSF036388 1 427 1.5E-179 T 17-10-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 VI35_12315 939a6649c75e8ddcb6ef44a72b922b72 427 PRINTS PR00481 Cytosol aminopeptidase signature 294 309 7.6E-47 T 17-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VI35_12315 939a6649c75e8ddcb6ef44a72b922b72 427 PRINTS PR00481 Cytosol aminopeptidase signature 207 228 7.6E-47 T 17-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VI35_12315 939a6649c75e8ddcb6ef44a72b922b72 427 PRINTS PR00481 Cytosol aminopeptidase signature 244 265 7.6E-47 T 17-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VI35_12315 939a6649c75e8ddcb6ef44a72b922b72 427 PRINTS PR00481 Cytosol aminopeptidase signature 185 202 7.6E-47 T 17-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VI35_12315 939a6649c75e8ddcb6ef44a72b922b72 427 PRINTS PR00481 Cytosol aminopeptidase signature 266 286 7.6E-47 T 17-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VI35_12315 939a6649c75e8ddcb6ef44a72b922b72 427 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 104 418 3.1E-91 T 17-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 VI35_12315 939a6649c75e8ddcb6ef44a72b922b72 427 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 270 277 - T 17-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 VI35_11140 fcc164a1562ea4bb07c0fbbca2c4bfa3 351 Gene3D G3DSA:3.20.20.70 65 264 1.0E-5 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_11140 fcc164a1562ea4bb07c0fbbca2c4bfa3 351 SUPERFAMILY SSF102114 66 264 5.49E-10 T 17-10-2018 VI35_11140 fcc164a1562ea4bb07c0fbbca2c4bfa3 351 Pfam PF04055 Radical SAM superfamily 67 245 2.1E-10 T 17-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VI35_14750 5161349e0269af0f2284a1c62c8bad85 593 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 266 282 2.1E-65 T 17-10-2018 VI35_14750 5161349e0269af0f2284a1c62c8bad85 593 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 496 513 2.1E-65 T 17-10-2018 VI35_14750 5161349e0269af0f2284a1c62c8bad85 593 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 411 429 2.1E-65 T 17-10-2018 VI35_14750 5161349e0269af0f2284a1c62c8bad85 593 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 433 451 2.1E-65 T 17-10-2018 VI35_14750 5161349e0269af0f2284a1c62c8bad85 593 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 147 165 2.1E-65 T 17-10-2018 VI35_14750 5161349e0269af0f2284a1c62c8bad85 593 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 296 315 2.1E-65 T 17-10-2018 VI35_14750 5161349e0269af0f2284a1c62c8bad85 593 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 470 485 2.1E-65 T 17-10-2018 VI35_14750 5161349e0269af0f2284a1c62c8bad85 593 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 75 100 2.1E-65 T 17-10-2018 VI35_14750 5161349e0269af0f2284a1c62c8bad85 593 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 165 184 2.1E-65 T 17-10-2018 VI35_14750 5161349e0269af0f2284a1c62c8bad85 593 Pfam PF01019 Gamma-glutamyltranspeptidase 68 588 7.8E-145 T 17-10-2018 VI35_14750 5161349e0269af0f2284a1c62c8bad85 593 SUPERFAMILY SSF56235 46 592 6.17E-159 T 17-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VI35_14750 5161349e0269af0f2284a1c62c8bad85 593 Gene3D G3DSA:1.10.246.130 283 406 7.7E-32 T 17-10-2018 VI35_14750 5161349e0269af0f2284a1c62c8bad85 593 Gene3D G3DSA:3.60.20.40 407 592 2.2E-57 T 17-10-2018 VI35_14750 5161349e0269af0f2284a1c62c8bad85 593 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 54 585 5.2E-109 T 17-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 VI35_07175 f03a38ecfc10346a52548ce44e97e653 185 Pfam PF07603 Protein of unknown function (DUF1566) 42 185 3.4E-25 T 17-10-2018 IPR011460 Protein of unknown function DUF1566 VI35_15405 923207edabdfc216a71e7bcbb85a07e1 386 SUPERFAMILY SSF52151 1 305 4.71E-48 T 17-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase VI35_15405 923207edabdfc216a71e7bcbb85a07e1 386 Pfam PF01734 Patatin-like phospholipase 8 219 2.9E-19 T 17-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 VI35_15405 923207edabdfc216a71e7bcbb85a07e1 386 Gene3D G3DSA:3.40.1090.10 1 115 4.2E-17 T 17-10-2018 VI35_15405 923207edabdfc216a71e7bcbb85a07e1 386 Gene3D G3DSA:3.40.1090.10 116 270 1.9E-5 T 17-10-2018 VI35_06240 1efaf19896a7b5dad07f32d63a169cf5 231 Gene3D G3DSA:3.30.2350.10 8 229 1.8E-62 T 17-10-2018 VI35_06240 1efaf19896a7b5dad07f32d63a169cf5 231 SUPERFAMILY SSF55120 12 230 8.16E-56 T 17-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_06240 1efaf19896a7b5dad07f32d63a169cf5 231 Pfam PF00849 RNA pseudouridylate synthase 25 179 2.9E-25 T 17-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_06240 1efaf19896a7b5dad07f32d63a169cf5 231 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 63 77 - T 17-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_15065 8ce470e93ee46d2613305e4b9adfbae0 268 SUPERFAMILY SSF51215 12 141 2.88E-5 T 17-10-2018 IPR037923 Transcription regulator HTH-like VI35_15065 8ce470e93ee46d2613305e4b9adfbae0 268 Gene3D G3DSA:1.10.10.60 155 259 3.2E-27 T 17-10-2018 VI35_15065 8ce470e93ee46d2613305e4b9adfbae0 268 Pfam PF12833 Helix-turn-helix domain 177 255 1.1E-23 T 17-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VI35_15065 8ce470e93ee46d2613305e4b9adfbae0 268 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 208 250 - T 17-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VI35_15065 8ce470e93ee46d2613305e4b9adfbae0 268 SMART SM00342 171 254 1.4E-31 T 17-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VI35_15065 8ce470e93ee46d2613305e4b9adfbae0 268 SUPERFAMILY SSF46689 207 255 2.02E-12 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_15065 8ce470e93ee46d2613305e4b9adfbae0 268 SUPERFAMILY SSF46689 156 204 5.2E-6 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_15065 8ce470e93ee46d2613305e4b9adfbae0 268 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 238 254 5.7E-5 T 17-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VI35_15065 8ce470e93ee46d2613305e4b9adfbae0 268 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 223 238 5.7E-5 T 17-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VI35_04355 65a73f68de225ee215e48c8d44cb80b7 135 Gene3D G3DSA:3.30.420.270 61 129 1.7E-9 T 17-10-2018 VI35_04355 65a73f68de225ee215e48c8d44cb80b7 135 Pfam PF02472 Biopolymer transport protein ExbD/TolR 11 132 2.4E-30 T 17-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 VI35_02760 0deb0dc76100addd122c6e6eefaa34b3 361 SUPERFAMILY SSF55811 223 347 1.04E-24 T 17-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VI35_02760 0deb0dc76100addd122c6e6eefaa34b3 361 ProSitePatterns PS01155 Endonuclease III family signature. 105 134 - T 17-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 VI35_02760 0deb0dc76100addd122c6e6eefaa34b3 361 SUPERFAMILY SSF48150 7 228 8.79E-77 T 17-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 VI35_02760 0deb0dc76100addd122c6e6eefaa34b3 361 Pfam PF00633 Helix-hairpin-helix motif 103 130 3.4E-7 T 17-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 VI35_02760 0deb0dc76100addd122c6e6eefaa34b3 361 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 9 272 4.2E-118 T 17-10-2018 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 VI35_02760 0deb0dc76100addd122c6e6eefaa34b3 361 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 195 211 - T 17-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 VI35_02760 0deb0dc76100addd122c6e6eefaa34b3 361 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 38 171 3.7E-20 T 17-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 VI35_02760 0deb0dc76100addd122c6e6eefaa34b3 361 Pfam PF14815 NUDIX domain 238 347 1.3E-21 T 17-10-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 VI35_02760 0deb0dc76100addd122c6e6eefaa34b3 361 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 195 211 6.1E-4 T 17-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 VI35_02760 0deb0dc76100addd122c6e6eefaa34b3 361 Gene3D G3DSA:3.90.79.10 236 350 2.3E-11 T 17-10-2018 VI35_02760 0deb0dc76100addd122c6e6eefaa34b3 361 Gene3D G3DSA:1.10.340.30 24 135 1.2E-87 T 17-10-2018 VI35_02760 0deb0dc76100addd122c6e6eefaa34b3 361 SMART SM00478 42 193 1.1E-47 T 17-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 VI35_02760 0deb0dc76100addd122c6e6eefaa34b3 361 Gene3D G3DSA:1.10.1670.10 12 212 1.2E-87 T 17-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 VI35_12670 4fa71bcb6eb3fb082e07f93a25002ec9 122 Gene3D G3DSA:2.60.120.10 18 118 4.5E-31 T 17-10-2018 IPR014710 RmlC-like jelly roll fold VI35_12670 4fa71bcb6eb3fb082e07f93a25002ec9 122 Pfam PF05899 Protein of unknown function (DUF861) 42 114 2.1E-19 T 17-10-2018 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 VI35_12670 4fa71bcb6eb3fb082e07f93a25002ec9 122 SUPERFAMILY SSF51182 13 117 5.2E-27 T 17-10-2018 IPR011051 RmlC-like cupin domain superfamily VI35_17990 259a29923fc0942685ddbcb6903c9008 311 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 147 310 1.9E-50 T 17-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 VI35_17990 259a29923fc0942685ddbcb6903c9008 311 SUPERFAMILY SSF56327 146 310 1.24E-43 T 17-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 VI35_17990 259a29923fc0942685ddbcb6903c9008 311 PIRSF PIRSF000102 1 307 9.8E-59 T 17-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 VI35_17990 259a29923fc0942685ddbcb6903c9008 311 Gene3D G3DSA:3.40.50.720 1 146 1.4E-64 T 17-10-2018 VI35_17990 259a29923fc0942685ddbcb6903c9008 311 Hamap MF_01516 Malate dehydrogenase [mdh]. 1 311 56.082 T 17-10-2018 IPR023958 Malate dehydrogenase, type 1, bacterial GO:0006099|GO:0030060|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 VI35_17990 259a29923fc0942685ddbcb6903c9008 311 TIGRFAM TIGR01772 MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 2 311 3.3E-128 T 17-10-2018 IPR010097 Malate dehydrogenase, type 1 GO:0006099|GO:0030060 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383|Reactome: R-HSA-70263|Reactome: R-HSA-71403 VI35_17990 259a29923fc0942685ddbcb6903c9008 311 SUPERFAMILY SSF51735 1 145 2.72E-38 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_17990 259a29923fc0942685ddbcb6903c9008 311 Gene3D G3DSA:3.90.110.10 147 311 1.8E-53 T 17-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 VI35_17990 259a29923fc0942685ddbcb6903c9008 311 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 1 145 2.6E-45 T 17-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 VI35_04815 b482c040b7e54a764dbe0bc95f199c03 252 Pfam PF01618 MotA/TolQ/ExbB proton channel family 99 212 1.1E-21 T 17-10-2018 IPR002898 MotA/TolQ/ExbB proton channel VI35_04815 b482c040b7e54a764dbe0bc95f199c03 252 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 182 199 - T 17-10-2018 IPR000540 Flagellar motor protein MotA, conserved site VI35_20770 d4ea0ba850c9eedab9753cf9df16288c 693 SMART SM00836 589 691 5.6E-4 T 17-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 VI35_20770 d4ea0ba850c9eedab9753cf9df16288c 693 Pfam PF05746 DALR anticodon binding domain 586 683 1.4E-8 T 17-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 VI35_20770 d4ea0ba850c9eedab9753cf9df16288c 693 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 6 555 2.4E-207 T 17-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VI35_20770 d4ea0ba850c9eedab9753cf9df16288c 693 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 3 692 26.282 T 17-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VI35_20770 d4ea0ba850c9eedab9753cf9df16288c 693 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 318 334 3.2E-34 T 17-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VI35_20770 d4ea0ba850c9eedab9753cf9df16288c 693 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 50 62 3.2E-34 T 17-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VI35_20770 d4ea0ba850c9eedab9753cf9df16288c 693 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 246 261 3.2E-34 T 17-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VI35_20770 d4ea0ba850c9eedab9753cf9df16288c 693 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 398 417 3.2E-34 T 17-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VI35_20770 d4ea0ba850c9eedab9753cf9df16288c 693 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 7 20 3.2E-34 T 17-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VI35_20770 d4ea0ba850c9eedab9753cf9df16288c 693 SUPERFAMILY SSF109604 342 495 2.04E-11 T 17-10-2018 VI35_20770 d4ea0ba850c9eedab9753cf9df16288c 693 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 1 693 7.8E-296 T 17-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VI35_02405 cda2cfa2c90f52fe30f0cafcdac5183e 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 17 75 1.7E-18 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_02405 cda2cfa2c90f52fe30f0cafcdac5183e 305 SUPERFAMILY SSF53850 103 303 7.06E-25 T 17-10-2018 VI35_02405 cda2cfa2c90f52fe30f0cafcdac5183e 305 SUPERFAMILY SSF46785 13 95 3.71E-21 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_02405 cda2cfa2c90f52fe30f0cafcdac5183e 305 Pfam PF03466 LysR substrate binding domain 100 289 6.6E-21 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_02405 cda2cfa2c90f52fe30f0cafcdac5183e 305 Gene3D G3DSA:3.40.190.10 111 298 4.9E-39 T 17-10-2018 VI35_02405 cda2cfa2c90f52fe30f0cafcdac5183e 305 Gene3D G3DSA:3.40.190.10 171 272 4.9E-39 T 17-10-2018 VI35_02405 cda2cfa2c90f52fe30f0cafcdac5183e 305 Gene3D G3DSA:1.10.10.10 15 103 4.0E-23 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_02405 cda2cfa2c90f52fe30f0cafcdac5183e 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 52 63 3.1E-7 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_02405 cda2cfa2c90f52fe30f0cafcdac5183e 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 42 3.1E-7 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_02405 cda2cfa2c90f52fe30f0cafcdac5183e 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 52 3.1E-7 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_05720 fe15f96557426c427db014c01bf48b5b 374 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 3 374 41.319 T 17-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 VI35_05720 fe15f96557426c427db014c01bf48b5b 374 Pfam PF03702 Anhydro-N-acetylmuramic acid kinase 4 374 9.8E-140 T 17-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 VI35_05720 fe15f96557426c427db014c01bf48b5b 374 SUPERFAMILY SSF53067 4 324 3.24E-19 T 17-10-2018 VI35_05720 fe15f96557426c427db014c01bf48b5b 374 Gene3D G3DSA:3.30.420.40 10 369 2.9E-124 T 17-10-2018 VI35_05720 fe15f96557426c427db014c01bf48b5b 374 Gene3D G3DSA:3.30.420.40 142 334 2.9E-124 T 17-10-2018 VI35_03260 ed1fd7f286bc4c9463357fa61d893668 535 Pfam PF00890 FAD binding domain 10 391 1.6E-104 T 17-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_03260 ed1fd7f286bc4c9463357fa61d893668 535 SUPERFAMILY SSF51905 9 445 3.42E-71 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_03260 ed1fd7f286bc4c9463357fa61d893668 535 Pfam PF02910 Fumarate reductase flavoprotein C-term 440 520 5.6E-15 T 17-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_03260 ed1fd7f286bc4c9463357fa61d893668 535 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 354 376 1.7E-11 T 17-10-2018 VI35_03260 ed1fd7f286bc4c9463357fa61d893668 535 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 11 30 1.7E-11 T 17-10-2018 VI35_03260 ed1fd7f286bc4c9463357fa61d893668 535 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 9 519 5.0E-210 T 17-10-2018 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 VI35_03260 ed1fd7f286bc4c9463357fa61d893668 535 Gene3D G3DSA:3.90.700.10 247 357 8.0E-156 T 17-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_03260 ed1fd7f286bc4c9463357fa61d893668 535 SUPERFAMILY SSF46977 425 525 1.7E-31 T 17-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_03260 ed1fd7f286bc4c9463357fa61d893668 535 Gene3D G3DSA:1.20.58.100 424 535 8.5E-46 T 17-10-2018 VI35_03260 ed1fd7f286bc4c9463357fa61d893668 535 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 369 376 9.9E-6 T 17-10-2018 VI35_03260 ed1fd7f286bc4c9463357fa61d893668 535 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 10 32 9.9E-6 T 17-10-2018 VI35_03260 ed1fd7f286bc4c9463357fa61d893668 535 SUPERFAMILY SSF56425 237 352 3.59E-42 T 17-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_03260 ed1fd7f286bc4c9463357fa61d893668 535 Gene3D G3DSA:3.50.50.60 10 403 8.0E-156 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_03260 ed1fd7f286bc4c9463357fa61d893668 535 PIRSF PIRSF000171 336 534 5.0E-14 T 17-10-2018 VI35_03260 ed1fd7f286bc4c9463357fa61d893668 535 PIRSF PIRSF000171 1 251 5.0E-25 T 17-10-2018 VI35_16975 b5d1d679116d03bac3e57f53623b00c7 275 SUPERFAMILY SSF46689 171 222 1.66E-13 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_16975 b5d1d679116d03bac3e57f53623b00c7 275 SUPERFAMILY SSF51215 27 154 3.01E-19 T 17-10-2018 IPR037923 Transcription regulator HTH-like VI35_16975 b5d1d679116d03bac3e57f53623b00c7 275 Gene3D G3DSA:1.10.10.60 169 273 6.3E-29 T 17-10-2018 VI35_16975 b5d1d679116d03bac3e57f53623b00c7 275 SUPERFAMILY SSF46689 225 271 4.23E-8 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_16975 b5d1d679116d03bac3e57f53623b00c7 275 Pfam PF12833 Helix-turn-helix domain 195 270 2.2E-21 T 17-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VI35_16975 b5d1d679116d03bac3e57f53623b00c7 275 SMART SM00342 188 270 3.2E-25 T 17-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VI35_16975 b5d1d679116d03bac3e57f53623b00c7 275 Pfam PF02311 AraC-like ligand binding domain 19 150 4.3E-21 T 17-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 VI35_13645 8ea97c742b2a5a9a49a5a92fc3090127 245 Pfam PF03963 Flagellar hook capping protein - N-terminal region 13 80 3.2E-19 T 17-10-2018 IPR005648 Flagellar hook capping protein VI35_13645 8ea97c742b2a5a9a49a5a92fc3090127 245 Gene3D G3DSA:2.30.30.910 89 221 2.7E-38 T 17-10-2018 VI35_13645 8ea97c742b2a5a9a49a5a92fc3090127 245 Gene3D G3DSA:2.60.40.4070 105 191 2.7E-38 T 17-10-2018 VI35_13645 8ea97c742b2a5a9a49a5a92fc3090127 245 Pfam PF13860 FlgD Ig-like domain 111 181 1.6E-14 T 17-10-2018 IPR025965 FlgD Ig-like domain VI35_13645 8ea97c742b2a5a9a49a5a92fc3090127 245 Pfam PF13861 FlgD Tudor-like domain 88 223 1.1E-15 T 17-10-2018 IPR025963 FlgD Tudor-like domain VI35_14485 5c55c41e576d45c43b1fba8aebb9e4fe 1105 Pfam PF12794 Mechanosensitive ion channel inner membrane domain 1 495 812 9.2E-93 T 17-10-2018 IPR025692 Mechanosensitive ion channel inner membrane domain 1 VI35_14485 5c55c41e576d45c43b1fba8aebb9e4fe 1105 SUPERFAMILY SSF50182 916 981 9.81E-17 T 17-10-2018 IPR010920 LSM domain superfamily VI35_14485 5c55c41e576d45c43b1fba8aebb9e4fe 1105 SUPERFAMILY SSF82861 831 914 1.96E-6 T 17-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 VI35_14485 5c55c41e576d45c43b1fba8aebb9e4fe 1105 Pfam PF00924 Mechanosensitive ion channel 873 1072 2.9E-55 T 17-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 VI35_14485 5c55c41e576d45c43b1fba8aebb9e4fe 1105 SUPERFAMILY SSF82689 983 1083 3.92E-27 T 17-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 VI35_14485 5c55c41e576d45c43b1fba8aebb9e4fe 1105 Gene3D G3DSA:3.30.70.100 984 1077 1.1E-18 T 17-10-2018 VI35_14485 5c55c41e576d45c43b1fba8aebb9e4fe 1105 Gene3D G3DSA:2.30.30.60 931 980 3.4E-14 T 17-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily VI35_14485 5c55c41e576d45c43b1fba8aebb9e4fe 1105 Pfam PF12795 Mechanosensitive ion channel porin domain 43 274 1.5E-49 T 17-10-2018 IPR024393 Mechanosensitive ion channel MscS, porin domain VI35_09450 2c2b667fc01da848c376e005e1ffda6f 588 Pfam PF02910 Fumarate reductase flavoprotein C-term 460 588 2.0E-35 T 17-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_09450 2c2b667fc01da848c376e005e1ffda6f 588 SUPERFAMILY SSF51905 4 443 5.4E-75 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_09450 2c2b667fc01da848c376e005e1ffda6f 588 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 6 588 1.5E-274 T 17-10-2018 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_09450 2c2b667fc01da848c376e005e1ffda6f 588 PIRSF PIRSF000171 1 580 1.1E-50 T 17-10-2018 VI35_09450 2c2b667fc01da848c376e005e1ffda6f 588 SUPERFAMILY SSF56425 236 356 8.67E-43 T 17-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_09450 2c2b667fc01da848c376e005e1ffda6f 588 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 43 52 - T 17-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_09450 2c2b667fc01da848c376e005e1ffda6f 588 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 380 395 9.2E-6 T 17-10-2018 VI35_09450 2c2b667fc01da848c376e005e1ffda6f 588 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 9 31 9.2E-6 T 17-10-2018 VI35_09450 2c2b667fc01da848c376e005e1ffda6f 588 Gene3D G3DSA:4.10.80.40 548 588 5.8E-25 T 17-10-2018 VI35_09450 2c2b667fc01da848c376e005e1ffda6f 588 Gene3D G3DSA:3.90.700.10 246 350 7.6E-172 T 17-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_09450 2c2b667fc01da848c376e005e1ffda6f 588 Gene3D G3DSA:3.50.50.60 9 416 7.6E-172 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_09450 2c2b667fc01da848c376e005e1ffda6f 588 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 9 588 8.9E-241 T 17-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_09450 2c2b667fc01da848c376e005e1ffda6f 588 Pfam PF00890 FAD binding domain 9 405 3.5E-120 T 17-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_09450 2c2b667fc01da848c376e005e1ffda6f 588 Gene3D G3DSA:1.20.58.100 431 547 2.9E-39 T 17-10-2018 VI35_09450 2c2b667fc01da848c376e005e1ffda6f 588 SUPERFAMILY SSF46977 452 588 1.31E-47 T 17-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_14620 9bbf893cb70b86ad99f4f35b7cf53053 129 Pfam PF03724 META domain 26 125 4.2E-23 T 17-10-2018 IPR005184 Domain of unknown function DUF306, Meta/HslJ VI35_14620 9bbf893cb70b86ad99f4f35b7cf53053 129 Gene3D G3DSA:2.40.128.270 17 128 1.5E-20 T 17-10-2018 IPR038670 HslJ-like superfamily VI35_16380 42dbe82e7cac1fb0cf7907fe4c8dd311 697 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 31 697 1.5E-132 T 17-10-2018 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0015232|GO:0015886|GO:0019867 VI35_16380 42dbe82e7cac1fb0cf7907fe4c8dd311 697 Gene3D G3DSA:2.40.170.20 166 697 7.2E-99 T 17-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VI35_16380 42dbe82e7cac1fb0cf7907fe4c8dd311 697 Pfam PF00593 TonB dependent receptor 233 695 6.1E-61 T 17-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel VI35_16380 42dbe82e7cac1fb0cf7907fe4c8dd311 697 Gene3D G3DSA:2.170.130.10 30 154 2.9E-36 T 17-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily VI35_16380 42dbe82e7cac1fb0cf7907fe4c8dd311 697 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 39 697 2.5E-135 T 17-10-2018 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0019867|GO:0022857|GO:0055085 VI35_16380 42dbe82e7cac1fb0cf7907fe4c8dd311 697 Pfam PF07715 TonB-dependent Receptor Plug Domain 44 149 2.6E-28 T 17-10-2018 IPR012910 TonB-dependent receptor, plug domain VI35_16380 42dbe82e7cac1fb0cf7907fe4c8dd311 697 SUPERFAMILY SSF56935 21 697 1.75E-119 T 17-10-2018 VI35_12310 2c47ce84d04e3a4729c63a6311c8d9b2 142 Pfam PF00334 Nucleoside diphosphate kinase 4 138 1.0E-55 T 17-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 VI35_12310 2c47ce84d04e3a4729c63a6311c8d9b2 142 SMART SM00562 3 140 1.4E-87 T 17-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 VI35_12310 2c47ce84d04e3a4729c63a6311c8d9b2 142 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 34.938 T 17-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 VI35_12310 2c47ce84d04e3a4729c63a6311c8d9b2 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 9.2E-38 T 17-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 VI35_12310 2c47ce84d04e3a4729c63a6311c8d9b2 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 9.2E-38 T 17-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 VI35_12310 2c47ce84d04e3a4729c63a6311c8d9b2 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 9.2E-38 T 17-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 VI35_12310 2c47ce84d04e3a4729c63a6311c8d9b2 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 9.2E-38 T 17-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 VI35_12310 2c47ce84d04e3a4729c63a6311c8d9b2 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 9.2E-38 T 17-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 VI35_12310 2c47ce84d04e3a4729c63a6311c8d9b2 142 Gene3D G3DSA:3.30.70.141 1 142 4.1E-58 T 17-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 VI35_12310 2c47ce84d04e3a4729c63a6311c8d9b2 142 SUPERFAMILY SSF54919 1 140 5.63E-59 T 17-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 VI35_12310 2c47ce84d04e3a4729c63a6311c8d9b2 142 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 17-10-2018 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VI35_02945 a09b1b25338baa09439aaf57b992d6c1 392 PIRSF PIRSF001434 1 383 1.7E-134 T 17-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 VI35_02945 a09b1b25338baa09439aaf57b992d6c1 392 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 189 203 - T 17-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 VI35_02945 a09b1b25338baa09439aaf57b992d6c1 392 Gene3D G3DSA:3.90.1150.10 247 384 4.3E-51 T 17-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VI35_02945 a09b1b25338baa09439aaf57b992d6c1 392 SUPERFAMILY SSF53383 11 381 3.48E-113 T 17-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VI35_02945 a09b1b25338baa09439aaf57b992d6c1 392 Gene3D G3DSA:3.40.640.10 2 246 1.3E-84 T 17-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VI35_02945 a09b1b25338baa09439aaf57b992d6c1 392 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 5 380 4.0E-138 T 17-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 VI35_02945 a09b1b25338baa09439aaf57b992d6c1 392 TIGRFAM TIGR02080 O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase 3 381 6.2E-192 T 17-10-2018 IPR011821 O-succinylhomoserine (thiol)-lyase KEGG: 00270+2.5.1.48|KEGG: 00450+2.5.1.48|KEGG: 00920+2.5.1.48|MetaCyc: PWY-801 VI35_03445 fed17df71f0f6893849d725600bb1e91 124 SUPERFAMILY SSF47175 25 118 9.42E-14 T 17-10-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 VI35_03445 fed17df71f0f6893849d725600bb1e91 124 Pfam PF07361 Cytochrome b562 25 120 6.2E-20 T 17-10-2018 IPR009155 Cytochrome b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900|GO:0042597 VI35_03445 fed17df71f0f6893849d725600bb1e91 124 Gene3D G3DSA:1.20.120.10 20 124 6.3E-7 T 17-10-2018 VI35_04640 004bddb0b43a55a114e1d44ed2b4d848 675 SUPERFAMILY SSF51905 373 609 1.55E-40 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_04640 004bddb0b43a55a114e1d44ed2b4d848 675 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 7 332 7.3E-85 T 17-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 VI35_04640 004bddb0b43a55a114e1d44ed2b4d848 675 Gene3D G3DSA:3.20.20.70 3 369 5.1E-125 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_04640 004bddb0b43a55a114e1d44ed2b4d848 675 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 378 397 4.2E-17 T 17-10-2018 VI35_04640 004bddb0b43a55a114e1d44ed2b4d848 675 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 621 637 4.2E-17 T 17-10-2018 VI35_04640 004bddb0b43a55a114e1d44ed2b4d848 675 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 460 478 4.2E-17 T 17-10-2018 VI35_04640 004bddb0b43a55a114e1d44ed2b4d848 675 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 500 518 4.2E-17 T 17-10-2018 VI35_04640 004bddb0b43a55a114e1d44ed2b4d848 675 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 377 648 5.7E-23 T 17-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VI35_04640 004bddb0b43a55a114e1d44ed2b4d848 675 SUPERFAMILY SSF51395 3 363 1.1E-113 T 17-10-2018 VI35_04640 004bddb0b43a55a114e1d44ed2b4d848 675 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 496 520 3.7E-6 T 17-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VI35_04640 004bddb0b43a55a114e1d44ed2b4d848 675 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 377 399 3.7E-6 T 17-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VI35_04640 004bddb0b43a55a114e1d44ed2b4d848 675 Gene3D G3DSA:3.40.50.720 376 668 2.7E-117 T 17-10-2018 VI35_04640 004bddb0b43a55a114e1d44ed2b4d848 675 Gene3D G3DSA:3.50.50.60 472 628 2.7E-117 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_19280 2021bd5ec5196350c4740106ba1678bd 298 Gene3D G3DSA:3.30.1490.20 115 181 4.7E-24 T 17-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 VI35_19280 2021bd5ec5196350c4740106ba1678bd 298 Pfam PF08443 RimK-like ATP-grasp domain 98 285 8.2E-70 T 17-10-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 VI35_19280 2021bd5ec5196350c4740106ba1678bd 298 Hamap MF_01552 Ribosomal protein S6--L-glutamate ligase [rimK]. 1 295 51.743 T 17-10-2018 IPR023533 Ribosomal protein S6--L-glutamate ligase RimK VI35_19280 2021bd5ec5196350c4740106ba1678bd 298 Gene3D G3DSA:3.30.470.80 182 295 1.1E-42 T 17-10-2018 VI35_19280 2021bd5ec5196350c4740106ba1678bd 298 TIGRFAM TIGR00768 rimK_fam: alpha-L-glutamate ligase, RimK family 3 284 2.3E-84 T 17-10-2018 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX GO:0006464 Reactome: R-HSA-70614 VI35_19280 2021bd5ec5196350c4740106ba1678bd 298 SUPERFAMILY SSF56059 98 287 7.07E-49 T 17-10-2018 VI35_19280 2021bd5ec5196350c4740106ba1678bd 298 Gene3D G3DSA:3.40.50.20 1 114 1.0E-38 T 17-10-2018 VI35_03990 d1b144445e74680871f1094cd44d072c 413 Pfam PF00924 Mechanosensitive ion channel 143 397 3.2E-55 T 17-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 VI35_03990 d1b144445e74680871f1094cd44d072c 413 SUPERFAMILY SSF50182 187 252 2.98E-11 T 17-10-2018 IPR010920 LSM domain superfamily VI35_05055 9c4f22c005e3f02152973230c00cf810 367 Hamap MF_02079 Peptidoglycan glycosyltransferase MrdB [mrdB]. 11 366 28.483 T 17-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VI35_05055 9c4f22c005e3f02152973230c00cf810 367 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 17 364 1.4E-135 T 17-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VI35_05055 9c4f22c005e3f02152973230c00cf810 367 Pfam PF01098 Cell cycle protein 17 364 8.0E-116 T 17-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VI35_05055 9c4f22c005e3f02152973230c00cf810 367 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 321 345 - T 17-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VI35_15400 2510bc1547b83eba924127b2f4878ea7 268 SUPERFAMILY SSF53474 46 256 5.15E-25 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_15400 2510bc1547b83eba924127b2f4878ea7 268 Gene3D G3DSA:3.40.50.1820 45 259 7.3E-25 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_15400 2510bc1547b83eba924127b2f4878ea7 268 Pfam PF12146 Serine aminopeptidase, S33 65 227 2.9E-12 T 17-10-2018 IPR022742 Serine aminopeptidase, S33 VI35_18750 df5775f61efd94e127b6d4bbe9ee6fb7 663 SUPERFAMILY SSF55816 374 600 1.44E-40 T 17-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VI35_18750 df5775f61efd94e127b6d4bbe9ee6fb7 663 PRINTS PR01607 Apyrase family signature 445 468 9.8E-28 T 17-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VI35_18750 df5775f61efd94e127b6d4bbe9ee6fb7 663 PRINTS PR01607 Apyrase family signature 32 50 9.8E-28 T 17-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VI35_18750 df5775f61efd94e127b6d4bbe9ee6fb7 663 PRINTS PR01607 Apyrase family signature 306 326 9.8E-28 T 17-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VI35_18750 df5775f61efd94e127b6d4bbe9ee6fb7 663 PRINTS PR01607 Apyrase family signature 267 290 9.8E-28 T 17-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VI35_18750 df5775f61efd94e127b6d4bbe9ee6fb7 663 PRINTS PR01607 Apyrase family signature 545 564 9.8E-28 T 17-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VI35_18750 df5775f61efd94e127b6d4bbe9ee6fb7 663 PRINTS PR01607 Apyrase family signature 239 256 9.8E-28 T 17-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VI35_18750 df5775f61efd94e127b6d4bbe9ee6fb7 663 SUPERFAMILY SSF56300 28 373 4.11E-80 T 17-10-2018 VI35_18750 df5775f61efd94e127b6d4bbe9ee6fb7 663 Gene3D G3DSA:3.90.780.10 395 600 6.7E-58 T 17-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VI35_18750 df5775f61efd94e127b6d4bbe9ee6fb7 663 Pfam PF02872 5'-nucleotidase, C-terminal domain 375 568 5.9E-25 T 17-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VI35_18750 df5775f61efd94e127b6d4bbe9ee6fb7 663 ProSitePatterns PS00786 5'-nucleotidase signature 2. 122 133 - T 17-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VI35_18750 df5775f61efd94e127b6d4bbe9ee6fb7 663 Pfam PF00149 Calcineurin-like phosphoesterase 34 284 9.6E-10 T 17-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 VI35_18750 df5775f61efd94e127b6d4bbe9ee6fb7 663 Gene3D G3DSA:3.60.21.10 27 373 3.6E-121 T 17-10-2018 IPR029052 Metallo-dependent phosphatase-like VI35_00525 0f87bf2de3601d4e5c2f4d42e101e6a0 129 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 2.4E-11 T 17-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VI35_00525 0f87bf2de3601d4e5c2f4d42e101e6a0 129 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 2.4E-11 T 17-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VI35_00525 0f87bf2de3601d4e5c2f4d42e101e6a0 129 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 2.4E-11 T 17-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VI35_00525 0f87bf2de3601d4e5c2f4d42e101e6a0 129 Pfam PF13411 MerR HTH family regulatory protein 1 68 1.1E-18 T 17-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VI35_00525 0f87bf2de3601d4e5c2f4d42e101e6a0 129 SUPERFAMILY SSF46955 1 126 1.25E-38 T 17-10-2018 IPR009061 Putative DNA-binding domain superfamily VI35_00525 0f87bf2de3601d4e5c2f4d42e101e6a0 129 ProSitePatterns PS00552 MerR-type HTH domain signature. 4 26 - T 17-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VI35_00525 0f87bf2de3601d4e5c2f4d42e101e6a0 129 Gene3D G3DSA:1.10.1660.10 1 125 1.8E-36 T 17-10-2018 VI35_00525 0f87bf2de3601d4e5c2f4d42e101e6a0 129 SMART SM00422 1 70 3.9E-33 T 17-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VI35_00525 0f87bf2de3601d4e5c2f4d42e101e6a0 129 TIGRFAM TIGR02044 CueR: Cu(I)-responsive transcriptional regulator 1 126 5.6E-52 T 17-10-2018 IPR011789 Cu(I)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0005507|GO:0045893 VI35_03595 632e3e28df36bb5376f9e7fec3ed18e0 176 Pfam PF00719 Inorganic pyrophosphatase 18 173 2.8E-53 T 17-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 VI35_03595 632e3e28df36bb5376f9e7fec3ed18e0 176 SUPERFAMILY SSF50324 6 174 3.27E-65 T 17-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 VI35_03595 632e3e28df36bb5376f9e7fec3ed18e0 176 Gene3D G3DSA:3.90.80.10 1 175 1.6E-68 T 17-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 VI35_03595 632e3e28df36bb5376f9e7fec3ed18e0 176 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 36.407 T 17-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 VI35_03595 632e3e28df36bb5376f9e7fec3ed18e0 176 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 66 72 - T 17-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 VI35_02510 d57c40094672d18ff2e3fb1f04749f6f 476 Pfam PF00367 phosphotransferase system, EIIB 11 43 1.5E-13 T 17-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VI35_02510 d57c40094672d18ff2e3fb1f04749f6f 476 Pfam PF02378 Phosphotransferase system, EIIC 112 406 4.7E-32 T 17-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 VI35_02510 d57c40094672d18ff2e3fb1f04749f6f 476 TIGRFAM TIGR01992 PTS-IIBC-Tre: PTS system, trehalose-specific IIBC component 8 462 4.5E-207 T 17-10-2018 IPR011296 Phosphotransferase system, trehalose-specific IIBC component GO:0015574|GO:0015771|GO:0016021 KEGG: 00500+2.7.1.201 VI35_02510 d57c40094672d18ff2e3fb1f04749f6f 476 SUPERFAMILY SSF55604 9 82 7.59E-21 T 17-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VI35_02510 d57c40094672d18ff2e3fb1f04749f6f 476 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 21 38 - T 17-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VI35_02510 d57c40094672d18ff2e3fb1f04749f6f 476 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 30 111 3.1E-18 T 17-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 VI35_02510 d57c40094672d18ff2e3fb1f04749f6f 476 Gene3D G3DSA:3.30.1360.60 2 79 1.3E-23 T 17-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VI35_07610 7a040d0f010e56dcfb026c5c0b96a7d7 345 Gene3D G3DSA:1.10.287.470 96 187 2.1E-34 T 17-10-2018 VI35_07610 7a040d0f010e56dcfb026c5c0b96a7d7 345 SUPERFAMILY SSF111369 64 228 1.09E-16 T 17-10-2018 VI35_07610 7a040d0f010e56dcfb026c5c0b96a7d7 345 Gene3D G3DSA:2.40.50.100 64 224 2.1E-34 T 17-10-2018 VI35_07610 7a040d0f010e56dcfb026c5c0b96a7d7 345 Gene3D G3DSA:2.40.30.170 225 271 2.1E-34 T 17-10-2018 VI35_07610 7a040d0f010e56dcfb026c5c0b96a7d7 345 Pfam PF13533 Biotin-lipoyl like 65 110 2.8E-11 T 17-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VI35_08445 ab9487a5fa21e9bc58ecb088577a2bf8 236 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 15 225 3.3E-70 T 17-10-2018 IPR017732 Type IV / VI secretion system, DotU VI35_08445 ab9487a5fa21e9bc58ecb088577a2bf8 236 Pfam PF09850 Type VI secretion system protein DotU 16 218 1.0E-60 T 17-10-2018 IPR017732 Type IV / VI secretion system, DotU VI35_08445 ab9487a5fa21e9bc58ecb088577a2bf8 236 Gene3D G3DSA:1.25.40.590 12 169 2.5E-57 T 17-10-2018 IPR038522 Type IV / VI secretion system, DotU superfamily VI35_06550 3d1fc568804740103b0aa38952c5675b 142 SUPERFAMILY SSF46785 5 134 2.16E-43 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_06550 3d1fc568804740103b0aa38952c5675b 142 Pfam PF01475 Ferric uptake regulator family 10 130 1.2E-46 T 17-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 VI35_06550 3d1fc568804740103b0aa38952c5675b 142 Gene3D G3DSA:1.10.10.10 1 84 1.4E-34 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_06550 3d1fc568804740103b0aa38952c5675b 142 Gene3D G3DSA:3.30.1490.190 85 142 2.3E-23 T 17-10-2018 VI35_08845 71d9d811c0d7eb7c8a3ece0fe25d1c8b 138 SMART SM00497 81 132 8.4E-5 T 17-10-2018 IPR003647 Intron encoded nuclease repeat VI35_08845 71d9d811c0d7eb7c8a3ece0fe25d1c8b 138 SUPERFAMILY SSF64496 78 133 1.96E-5 T 17-10-2018 VI35_12575 60367fc9ce79aa3bc6b6502503d58af0 287 Gene3D G3DSA:2.60.40.2540 16 168 1.4E-51 T 17-10-2018 VI35_12575 60367fc9ce79aa3bc6b6502503d58af0 287 Pfam PF00691 OmpA family 180 275 4.5E-18 T 17-10-2018 IPR006665 OmpA-like domain VI35_12575 60367fc9ce79aa3bc6b6502503d58af0 287 Gene3D G3DSA:3.30.1330.60 169 286 7.1E-35 T 17-10-2018 IPR036737 OmpA-like domain superfamily VI35_12575 60367fc9ce79aa3bc6b6502503d58af0 287 SUPERFAMILY SSF103088 157 279 3.14E-27 T 17-10-2018 IPR036737 OmpA-like domain superfamily VI35_12575 60367fc9ce79aa3bc6b6502503d58af0 287 PRINTS PR01021 OMPA domain signature 211 226 8.9E-6 T 17-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VI35_12575 60367fc9ce79aa3bc6b6502503d58af0 287 PRINTS PR01021 OMPA domain signature 226 242 8.9E-6 T 17-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VI35_12575 60367fc9ce79aa3bc6b6502503d58af0 287 PRINTS PR01021 OMPA domain signature 180 202 8.9E-6 T 17-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VI35_12575 60367fc9ce79aa3bc6b6502503d58af0 287 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 21 37 2.9E-75 T 17-10-2018 VI35_12575 60367fc9ce79aa3bc6b6502503d58af0 287 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 97 114 2.9E-75 T 17-10-2018 VI35_12575 60367fc9ce79aa3bc6b6502503d58af0 287 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 116 138 2.9E-75 T 17-10-2018 VI35_12575 60367fc9ce79aa3bc6b6502503d58af0 287 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 167 194 2.9E-75 T 17-10-2018 VI35_12575 60367fc9ce79aa3bc6b6502503d58af0 287 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 38 56 2.9E-75 T 17-10-2018 VI35_12575 60367fc9ce79aa3bc6b6502503d58af0 287 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 244 263 2.9E-75 T 17-10-2018 VI35_12575 60367fc9ce79aa3bc6b6502503d58af0 287 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 226 243 2.9E-75 T 17-10-2018 VI35_12575 60367fc9ce79aa3bc6b6502503d58af0 287 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 197 223 2.9E-75 T 17-10-2018 VI35_12575 60367fc9ce79aa3bc6b6502503d58af0 287 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 141 160 2.9E-75 T 17-10-2018 VI35_12575 60367fc9ce79aa3bc6b6502503d58af0 287 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 78 96 2.9E-75 T 17-10-2018 VI35_12575 60367fc9ce79aa3bc6b6502503d58af0 287 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 264 284 2.9E-75 T 17-10-2018 VI35_12575 60367fc9ce79aa3bc6b6502503d58af0 287 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 59 77 2.9E-75 T 17-10-2018 VI35_16890 0222c55032cb689667ee5c0bf3a7a1fb 186 Gene3D G3DSA:2.160.10.10 1 183 2.2E-48 T 17-10-2018 VI35_16890 0222c55032cb689667ee5c0bf3a7a1fb 186 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 12 44 3.4E-5 T 17-10-2018 IPR001451 Hexapeptide repeat VI35_16890 0222c55032cb689667ee5c0bf3a7a1fb 186 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 79 111 1.8E-5 T 17-10-2018 IPR001451 Hexapeptide repeat VI35_16890 0222c55032cb689667ee5c0bf3a7a1fb 186 SUPERFAMILY SSF51161 7 140 1.39E-32 T 17-10-2018 IPR011004 Trimeric LpxA-like superfamily VI35_20335 6a30ed47eb4f81235188c7d108296541 282 SUPERFAMILY SSF53474 4 279 2.97E-89 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_20335 6a30ed47eb4f81235188c7d108296541 282 Pfam PF00756 Putative esterase 23 273 6.7E-64 T 17-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 VI35_20335 6a30ed47eb4f81235188c7d108296541 282 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 5 278 6.0E-122 T 17-10-2018 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801|Reactome: R-HSA-156590 VI35_20335 6a30ed47eb4f81235188c7d108296541 282 Gene3D G3DSA:3.40.50.1820 3 280 8.0E-91 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_21135 aae87f28f4b3e89f276dd0fe9c165dc1 156 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 138 12.991 T 17-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 VI35_21135 aae87f28f4b3e89f276dd0fe9c165dc1 156 SUPERFAMILY SSF81573 63 121 7.85E-15 T 17-10-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily VI35_21135 aae87f28f4b3e89f276dd0fe9c165dc1 156 Gene3D G3DSA:1.20.5.620 62 122 1.5E-22 T 17-10-2018 VI35_21135 aae87f28f4b3e89f276dd0fe9c165dc1 156 Pfam PF00430 ATP synthase B/B' CF(0) 6 136 4.0E-37 T 17-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 VI35_21135 aae87f28f4b3e89f276dd0fe9c165dc1 156 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 10 156 8.5E-56 T 17-10-2018 IPR005864 ATP synthase, F0 complex, subunit b, bacterial GO:0015078|GO:0015986|GO:0045263 VI35_01800 18fd01dc9017fc2e19d9d411f4ab3c91 266 SUPERFAMILY SSF52540 9 238 1.39E-63 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_01800 18fd01dc9017fc2e19d9d411f4ab3c91 266 SMART SM00382 34 231 7.6E-10 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_01800 18fd01dc9017fc2e19d9d411f4ab3c91 266 Gene3D G3DSA:3.40.50.300 7 252 9.8E-64 T 17-10-2018 VI35_01800 18fd01dc9017fc2e19d9d411f4ab3c91 266 Pfam PF00005 ABC transporter 26 173 4.3E-28 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_01800 18fd01dc9017fc2e19d9d411f4ab3c91 266 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_11700 484ecbcb6fae95bacb3b1deafc8acd6d 510 Gene3D G3DSA:3.40.190.10 160 264 2.2E-46 T 17-10-2018 VI35_11700 484ecbcb6fae95bacb3b1deafc8acd6d 510 SUPERFAMILY SSF53850 61 306 8.54E-31 T 17-10-2018 VI35_11700 484ecbcb6fae95bacb3b1deafc8acd6d 510 Gene3D G3DSA:3.40.190.10 58 299 2.2E-46 T 17-10-2018 VI35_11700 484ecbcb6fae95bacb3b1deafc8acd6d 510 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 103 305 3.4E-23 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_11700 484ecbcb6fae95bacb3b1deafc8acd6d 510 SUPERFAMILY SSF53955 324 481 6.68E-36 T 17-10-2018 IPR023346 Lysozyme-like domain superfamily VI35_11700 484ecbcb6fae95bacb3b1deafc8acd6d 510 Pfam PF01464 Transglycosylase SLT domain 328 439 7.2E-16 T 17-10-2018 IPR008258 Transglycosylase SLT domain 1 VI35_11700 484ecbcb6fae95bacb3b1deafc8acd6d 510 Gene3D G3DSA:1.10.530.10 323 493 1.7E-37 T 17-10-2018 VI35_11700 484ecbcb6fae95bacb3b1deafc8acd6d 510 SMART SM00062 61 307 1.0E-9 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_01460 4862135f5dfa6c11eeddb8cc3faf59c9 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 5.1E-27 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_01460 4862135f5dfa6c11eeddb8cc3faf59c9 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 5.1E-27 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_01460 4862135f5dfa6c11eeddb8cc3faf59c9 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 5.1E-27 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_01460 4862135f5dfa6c11eeddb8cc3faf59c9 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 5.1E-27 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_01460 4862135f5dfa6c11eeddb8cc3faf59c9 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 5.1E-27 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_01460 4862135f5dfa6c11eeddb8cc3faf59c9 234 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 207 2.6E-4 T 17-10-2018 VI35_01460 4862135f5dfa6c11eeddb8cc3faf59c9 234 Pfam PF00106 short chain dehydrogenase 9 190 7.8E-53 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_01460 4862135f5dfa6c11eeddb8cc3faf59c9 234 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 2.1E-11 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_01460 4862135f5dfa6c11eeddb8cc3faf59c9 234 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 2.1E-11 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_01460 4862135f5dfa6c11eeddb8cc3faf59c9 234 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 2.1E-11 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_01460 4862135f5dfa6c11eeddb8cc3faf59c9 234 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 17-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 VI35_01460 4862135f5dfa6c11eeddb8cc3faf59c9 234 Gene3D G3DSA:3.40.50.720 1 225 2.0E-64 T 17-10-2018 VI35_01460 4862135f5dfa6c11eeddb8cc3faf59c9 234 SUPERFAMILY SSF51735 3 222 6.53E-65 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_18300 db6376357e7dad3bc2cde97d56294371 334 Gene3D G3DSA:3.40.50.1000 114 323 8.5E-89 T 17-10-2018 IPR023214 HAD superfamily VI35_18300 db6376357e7dad3bc2cde97d56294371 334 Gene3D G3DSA:3.30.70.2020 37 325 8.5E-89 T 17-10-2018 VI35_18300 db6376357e7dad3bc2cde97d56294371 334 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 108 323 1.1E-77 T 17-10-2018 VI35_18300 db6376357e7dad3bc2cde97d56294371 334 SUPERFAMILY SSF56784 111 320 6.37E-47 T 17-10-2018 IPR036412 HAD-like superfamily VI35_18300 db6376357e7dad3bc2cde97d56294371 334 Pfam PF12710 haloacid dehalogenase-like hydrolase 124 288 3.8E-18 T 17-10-2018 VI35_18300 db6376357e7dad3bc2cde97d56294371 334 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 120 288 1.5E-26 T 17-10-2018 VI35_18300 db6376357e7dad3bc2cde97d56294371 334 Gene3D G3DSA:1.10.150.210 128 190 8.5E-89 T 17-10-2018 IPR023190 Phosphoserine phosphatase, domain 2 GO:0004647|GO:0006564 KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3|Reactome: R-HSA-977347 VI35_08790 630dbedabc610c9a851872402d6f9e3e 240 Pfam PF03741 Integral membrane protein TerC family 16 204 4.6E-51 T 17-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 VI35_20775 41e278b29f8104f3ccb0a8d882d99802 437 Pfam PF12358 Protein of unknown function (DUF3644) 128 194 2.1E-10 T 17-10-2018 IPR022104 Protein of unknown function DUF3644 VI35_16265 c10c44716d6874a72b59ef07992f4543 112 Pfam PF11169 Protein of unknown function (DUF2956) 8 108 6.3E-42 T 17-10-2018 IPR021339 Protein of unknown function DUF2956 VI35_17700 3c4713d8d65e4af85ab199506aaf89ca 145 Pfam PF09335 SNARE associated Golgi protein 29 140 7.1E-10 T 17-10-2018 IPR032816 SNARE associated Golgi protein VI35_17700 3c4713d8d65e4af85ab199506aaf89ca 145 ProDom PD085709 MEMBRANE RP436 UNCHARACTERIZED INTEGRAL PREDICTED TRANSMEMBRANE 12 117 3.0E-5 T 17-10-2018 IPR020143 Uncharacterised protein family, RP436 VI35_16225 dcc0d52959678d54d04a2403d4c475f6 463 Gene3D G3DSA:1.20.200.10 138 406 4.3E-117 T 17-10-2018 VI35_16225 dcc0d52959678d54d04a2403d4c475f6 463 ProSitePatterns PS00163 Fumarate lyases signature. 316 325 - T 17-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 VI35_16225 dcc0d52959678d54d04a2403d4c475f6 463 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 4 460 1.3E-227 T 17-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 VI35_16225 dcc0d52959678d54d04a2403d4c475f6 463 Hamap MF_00743 Fumarate hydratase class II [fumC]. 3 461 88.492 T 17-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 VI35_16225 dcc0d52959678d54d04a2403d4c475f6 463 Pfam PF00206 Lyase 11 341 1.3E-110 T 17-10-2018 IPR022761 Fumarate lyase, N-terminal VI35_16225 dcc0d52959678d54d04a2403d4c475f6 463 Gene3D G3DSA:1.10.275.10 4 137 3.6E-56 T 17-10-2018 IPR024083 Fumarase/histidase, N-terminal VI35_16225 dcc0d52959678d54d04a2403d4c475f6 463 PRINTS PR00149 Fumarate lyase superfamily signature 133 151 4.9E-33 T 17-10-2018 IPR000362 Fumarate lyase family VI35_16225 dcc0d52959678d54d04a2403d4c475f6 463 PRINTS PR00149 Fumarate lyase superfamily signature 316 332 4.9E-33 T 17-10-2018 IPR000362 Fumarate lyase family VI35_16225 dcc0d52959678d54d04a2403d4c475f6 463 PRINTS PR00149 Fumarate lyase superfamily signature 179 197 4.9E-33 T 17-10-2018 IPR000362 Fumarate lyase family VI35_16225 dcc0d52959678d54d04a2403d4c475f6 463 PRINTS PR00149 Fumarate lyase superfamily signature 270 297 4.9E-33 T 17-10-2018 IPR000362 Fumarate lyase family VI35_16225 dcc0d52959678d54d04a2403d4c475f6 463 Pfam PF10415 Fumarase C C-terminus 407 460 2.1E-24 T 17-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 VI35_16225 dcc0d52959678d54d04a2403d4c475f6 463 Gene3D G3DSA:1.10.40.30 407 462 2.4E-27 T 17-10-2018 VI35_16225 dcc0d52959678d54d04a2403d4c475f6 463 SUPERFAMILY SSF48557 3 459 3.3E-153 T 17-10-2018 IPR008948 L-Aspartase-like GO:0003824 VI35_05020 c0d1fa3870f77aee0c0b5dec88abdfe9 321 PIRSF PIRSF005963 6 321 2.8E-131 T 17-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 VI35_05020 c0d1fa3870f77aee0c0b5dec88abdfe9 321 SUPERFAMILY SSF102114 52 317 1.44E-70 T 17-10-2018 VI35_05020 c0d1fa3870f77aee0c0b5dec88abdfe9 321 SMART SM00729 84 293 4.6E-19 T 17-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 VI35_05020 c0d1fa3870f77aee0c0b5dec88abdfe9 321 Pfam PF04055 Radical SAM superfamily 90 251 3.7E-18 T 17-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VI35_05020 c0d1fa3870f77aee0c0b5dec88abdfe9 321 TIGRFAM TIGR00510 lipA: lipoyl synthase 21 321 3.6E-148 T 17-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 VI35_05020 c0d1fa3870f77aee0c0b5dec88abdfe9 321 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 30 73 2.8E-7 T 17-10-2018 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 VI35_05020 c0d1fa3870f77aee0c0b5dec88abdfe9 321 Gene3D G3DSA:3.20.20.70 50 292 1.1E-26 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_05020 c0d1fa3870f77aee0c0b5dec88abdfe9 321 Hamap MF_00206 Lipoyl synthase [lipA]. 1 321 156.629 T 17-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 VI35_00555 63a6e0e5df9126545685dee8732bc38f 392 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 165 391 1.4E-77 T 17-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 VI35_00555 63a6e0e5df9126545685dee8732bc38f 392 PIRSF PIRSF000484 1 386 7.8E-64 T 17-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 VI35_00555 63a6e0e5df9126545685dee8732bc38f 392 SUPERFAMILY SSF51690 116 389 2.35E-85 T 17-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 VI35_00555 63a6e0e5df9126545685dee8732bc38f 392 Hamap MF_00570 Nicotinate phosphoribosyltransferase [pncB]. 1 392 46.112 T 17-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 VI35_00555 63a6e0e5df9126545685dee8732bc38f 392 SUPERFAMILY SSF54675 1 134 4.71E-39 T 17-10-2018 VI35_00555 63a6e0e5df9126545685dee8732bc38f 392 Gene3D G3DSA:3.20.140.10 1 391 1.1E-149 T 17-10-2018 VI35_00555 63a6e0e5df9126545685dee8732bc38f 392 TIGRFAM TIGR01514 NAPRTase: nicotinate phosphoribosyltransferase 4 390 1.2E-148 T 17-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 VI35_16495 a4da04a751132f8985f2c288e8270145 810 Pfam PF03968 OstA-like protein 67 200 4.1E-14 T 17-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal VI35_16495 a4da04a751132f8985f2c288e8270145 810 Pfam PF04453 Organic solvent tolerance protein 320 719 5.5E-78 T 17-10-2018 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 VI35_16495 a4da04a751132f8985f2c288e8270145 810 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 16 784 18.569 T 17-10-2018 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 VI35_10495 056cd4fd8ceb9e7ebe3fe2c2c71e79a0 540 Gene3D G3DSA:3.40.50.12780 12 441 3.2E-100 T 17-10-2018 VI35_10495 056cd4fd8ceb9e7ebe3fe2c2c71e79a0 540 Gene3D G3DSA:3.30.300.310 442 540 1.6E-34 T 17-10-2018 VI35_10495 056cd4fd8ceb9e7ebe3fe2c2c71e79a0 540 Pfam PF13193 AMP-binding enzyme C-terminal domain 455 529 2.8E-23 T 17-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain VI35_10495 056cd4fd8ceb9e7ebe3fe2c2c71e79a0 540 Pfam PF00501 AMP-binding enzyme 29 446 9.7E-91 T 17-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 VI35_10495 056cd4fd8ceb9e7ebe3fe2c2c71e79a0 540 SUPERFAMILY SSF56801 16 539 7.46E-136 T 17-10-2018 VI35_04650 037c3301a22f2ce30228205013a1ccc9 359 Gene3D G3DSA:1.10.287.950 5 260 7.2E-40 T 17-10-2018 VI35_04650 037c3301a22f2ce30228205013a1ccc9 359 Pfam PF13682 Chemoreceptor zinc-binding domain 258 323 2.6E-15 T 17-10-2018 IPR025991 Chemoreceptor zinc-binding domain VI35_04650 037c3301a22f2ce30228205013a1ccc9 359 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 116 249 5.3E-29 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_04650 037c3301a22f2ce30228205013a1ccc9 359 SMART SM00283 51 273 1.2E-15 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_04650 037c3301a22f2ce30228205013a1ccc9 359 SUPERFAMILY SSF58104 47 249 3.53E-41 T 17-10-2018 VI35_05990 079d1503ef065e33a42c9ea3c68c413b 243 Pfam PF01618 MotA/TolQ/ExbB proton channel family 98 205 1.2E-22 T 17-10-2018 IPR002898 MotA/TolQ/ExbB proton channel VI35_18145 ae6f83e90bbfcc0ff19f6f4273e6d9b9 257 Hamap MF_00652 UPF0246 protein YaaA [yaaA]. 1 255 37.229 T 17-10-2018 IPR005583 Peroxide stress protein YaaA VI35_18145 ae6f83e90bbfcc0ff19f6f4273e6d9b9 257 Pfam PF03883 Peroxide stress protein YaaA 1 243 1.8E-89 T 17-10-2018 IPR005583 Peroxide stress protein YaaA VI35_20670 7712e72ac9cadbb174abc4c32728eb38 440 Hamap MF_01279 Xaa-Pro dipeptidase [pepQ]. 1 440 58.684 T 17-10-2018 IPR022846 Xaa-Pro dipeptidase GO:0016795 VI35_20670 7712e72ac9cadbb174abc4c32728eb38 440 Gene3D G3DSA:3.90.230.10 159 438 2.3E-76 T 17-10-2018 VI35_20670 7712e72ac9cadbb174abc4c32728eb38 440 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 333 345 - T 17-10-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site VI35_20670 7712e72ac9cadbb174abc4c32728eb38 440 Gene3D G3DSA:3.40.350.10 1 157 3.2E-59 T 17-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal VI35_20670 7712e72ac9cadbb174abc4c32728eb38 440 SUPERFAMILY SSF55920 161 436 5.63E-54 T 17-10-2018 IPR036005 Creatinase/aminopeptidase-like VI35_20670 7712e72ac9cadbb174abc4c32728eb38 440 Pfam PF00557 Metallopeptidase family M24 166 427 6.3E-45 T 17-10-2018 IPR000994 Peptidase M24 VI35_20585 afb7c68d511b6cced6e750e3a188b0ad 214 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 9.8E-10 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_20585 afb7c68d511b6cced6e750e3a188b0ad 214 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 9.8E-10 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_20585 afb7c68d511b6cced6e750e3a188b0ad 214 SUPERFAMILY SSF46689 2 72 2.67E-17 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_20585 afb7c68d511b6cced6e750e3a188b0ad 214 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 52 2.5E-13 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_20585 afb7c68d511b6cced6e750e3a188b0ad 214 Gene3D G3DSA:1.10.357.10 1 211 4.0E-75 T 17-10-2018 VI35_20585 afb7c68d511b6cced6e750e3a188b0ad 214 Pfam PF13972 Bacterial transcriptional repressor 56 195 6.7E-43 T 17-10-2018 IPR025722 Bacterial transcriptional repressor TetR VI35_17950 3a2e3b5a9da0fb25f792b0de214ad0c2 82 SUPERFAMILY SSF54565 1 76 3.79E-28 T 17-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_17950 3a2e3b5a9da0fb25f792b0de214ad0c2 82 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 78 3.5E-29 T 17-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_17950 3a2e3b5a9da0fb25f792b0de214ad0c2 82 Pfam PF00886 Ribosomal protein S16 8 68 4.0E-23 T 17-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_17950 3a2e3b5a9da0fb25f792b0de214ad0c2 82 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 78 23.903 T 17-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_17950 3a2e3b5a9da0fb25f792b0de214ad0c2 82 Gene3D G3DSA:3.30.1320.10 1 81 3.3E-30 T 17-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_12420 8c6aa1bd1c6cd923a52b3db726c64c97 188 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 157 182 7.4E-7 T 17-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 VI35_12420 8c6aa1bd1c6cd923a52b3db726c64c97 188 Gene3D G3DSA:3.40.30.10 1 187 1.1E-65 T 17-10-2018 VI35_12420 8c6aa1bd1c6cd923a52b3db726c64c97 188 Pfam PF00578 AhpC/TSA family 7 133 1.8E-37 T 17-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 VI35_12420 8c6aa1bd1c6cd923a52b3db726c64c97 188 PIRSF PIRSF000239 1 188 2.7E-55 T 17-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 VI35_12420 8c6aa1bd1c6cd923a52b3db726c64c97 188 SUPERFAMILY SSF52833 5 187 9.42E-60 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_12420 8c6aa1bd1c6cd923a52b3db726c64c97 188 TIGRFAM TIGR03137 AhpC: peroxiredoxin 4 188 1.9E-105 T 17-10-2018 IPR017559 Alkyl hydroperoxide reductase subunit C GO:0006979|GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 VI35_14310 6a7ec2abc332c8d25e8765a8439d35b0 454 SUPERFAMILY SSF55604 6 81 3.92E-21 T 17-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VI35_14310 6a7ec2abc332c8d25e8765a8439d35b0 454 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 19 36 - T 17-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VI35_14310 6a7ec2abc332c8d25e8765a8439d35b0 454 Pfam PF00367 phosphotransferase system, EIIB 9 41 6.1E-15 T 17-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VI35_14310 6a7ec2abc332c8d25e8765a8439d35b0 454 Pfam PF02378 Phosphotransferase system, EIIC 110 395 1.8E-50 T 17-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 VI35_14310 6a7ec2abc332c8d25e8765a8439d35b0 454 TIGRFAM TIGR01996 PTS-II-BC-sucr: PTS system, sucrose-specific IIBC component 4 448 4.2E-193 T 17-10-2018 IPR010973 Phosphotransferase system, sucrose-specific IIBC component GO:0008982|GO:0009401|GO:0016021 VI35_14310 6a7ec2abc332c8d25e8765a8439d35b0 454 TIGRFAM TIGR00852 pts-Glc: PTS system, maltose and glucose-specific subfamily, IIC component 153 437 3.9E-91 T 17-10-2018 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component GO:0008982|GO:0009401|GO:0016021 VI35_14310 6a7ec2abc332c8d25e8765a8439d35b0 454 Gene3D G3DSA:3.30.1360.60 1 77 2.8E-26 T 17-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VI35_14310 6a7ec2abc332c8d25e8765a8439d35b0 454 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 28 111 5.4E-19 T 17-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 VI35_13760 137b719661d6db530307aa7be12f9c5d 362 Gene3D G3DSA:3.40.50.970 1 350 2.4E-104 T 17-10-2018 VI35_13760 137b719661d6db530307aa7be12f9c5d 362 SUPERFAMILY SSF52518 3 350 2.32E-95 T 17-10-2018 IPR029061 Thiamin diphosphate-binding fold VI35_13760 137b719661d6db530307aa7be12f9c5d 362 Pfam PF00676 Dehydrogenase E1 component 35 322 5.7E-78 T 17-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 VI35_13760 137b719661d6db530307aa7be12f9c5d 362 TIGRFAM TIGR03181 PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 8 348 5.8E-136 T 17-10-2018 IPR017596 Pyruvate dehydrogenase E1 component subunit alpha/BCKADH E1-alpha KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 VI35_00250 d6764ec2f8ee714ea164727d379ea1fb 394 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 6 392 3.2E-128 T 17-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like VI35_00250 d6764ec2f8ee714ea164727d379ea1fb 394 SUPERFAMILY SSF160996 190 338 1.7E-40 T 17-10-2018 VI35_00250 d6764ec2f8ee714ea164727d379ea1fb 394 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 6.0E-6 T 17-10-2018 VI35_00250 d6764ec2f8ee714ea164727d379ea1fb 394 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 152 170 6.0E-6 T 17-10-2018 VI35_00250 d6764ec2f8ee714ea164727d379ea1fb 394 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 347 369 6.0E-6 T 17-10-2018 VI35_00250 d6764ec2f8ee714ea164727d379ea1fb 394 Gene3D G3DSA:3.50.50.60 7 388 2.1E-127 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_00250 d6764ec2f8ee714ea164727d379ea1fb 394 SUPERFAMILY SSF51905 1 393 1.59E-59 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_00250 d6764ec2f8ee714ea164727d379ea1fb 394 Pfam PF03486 HI0933-like protein 5 392 2.3E-152 T 17-10-2018 VI35_00250 d6764ec2f8ee714ea164727d379ea1fb 394 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 2.2E-8 T 17-10-2018 VI35_00250 d6764ec2f8ee714ea164727d379ea1fb 394 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 362 369 2.2E-8 T 17-10-2018 VI35_00250 d6764ec2f8ee714ea164727d379ea1fb 394 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 155 164 2.2E-8 T 17-10-2018 VI35_00250 d6764ec2f8ee714ea164727d379ea1fb 394 Gene3D G3DSA:2.40.30.10 188 339 2.1E-127 T 17-10-2018 VI35_00250 d6764ec2f8ee714ea164727d379ea1fb 394 Gene3D G3DSA:1.10.8.260 262 322 2.1E-127 T 17-10-2018 IPR023166 HI0933-like insert domain superfamily VI35_03840 2be230e66dff7d097f0895d09ecdc42f 98 SUPERFAMILY SSF54909 1 98 5.72E-29 T 17-10-2018 IPR011008 Dimeric alpha-beta barrel VI35_03840 2be230e66dff7d097f0895d09ecdc42f 98 Pfam PF03795 YCII-related domain 1 95 2.9E-26 T 17-10-2018 IPR005545 YCII-related VI35_03840 2be230e66dff7d097f0895d09ecdc42f 98 Gene3D G3DSA:3.30.70.1060 1 98 1.0E-35 T 17-10-2018 VI35_16805 24e3c1eda0187c07b27038127e405ec1 199 SUPERFAMILY SSF52016 1 195 2.16E-61 T 17-10-2018 VI35_16805 24e3c1eda0187c07b27038127e405ec1 199 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 188 2.9E-93 T 17-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 VI35_16805 24e3c1eda0187c07b27038127e405ec1 199 Gene3D G3DSA:3.20.19.10 1 180 4.0E-76 T 17-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 VI35_16805 24e3c1eda0187c07b27038127e405ec1 199 Pfam PF00694 Aconitase C-terminal domain 1 125 8.7E-39 T 17-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 VI35_16805 24e3c1eda0187c07b27038127e405ec1 199 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 199 44.863 T 17-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 VI35_11780 012ef55cf7b3a65516a45a968b6937d1 481 Hamap MF_01182 Cytochrome c-552 [nrfA]. 9 480 58.197 T 17-10-2018 IPR017570 Formate-dependent cytochrome c nitrite reductase, c552 subunit GO:0005509|GO:0006807|GO:0020037|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 VI35_11780 012ef55cf7b3a65516a45a968b6937d1 481 TIGRFAM TIGR03152 cyto_c552_HCOOH: formate-dependent cytochrome c nitrite reductase, c552 subunit 41 477 1.5E-245 T 17-10-2018 IPR017570 Formate-dependent cytochrome c nitrite reductase, c552 subunit GO:0005509|GO:0006807|GO:0020037|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 VI35_11780 012ef55cf7b3a65516a45a968b6937d1 481 Pfam PF02335 Cytochrome c552 46 475 1.4E-180 T 17-10-2018 IPR003321 Cytochrome c552 GO:0006807|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 VI35_11780 012ef55cf7b3a65516a45a968b6937d1 481 Gene3D G3DSA:1.20.140.10 314 456 1.1E-189 T 17-10-2018 VI35_11780 012ef55cf7b3a65516a45a968b6937d1 481 SUPERFAMILY SSF48695 40 475 8.51E-164 T 17-10-2018 IPR036280 Multiheme cytochrome superfamily VI35_11780 012ef55cf7b3a65516a45a968b6937d1 481 PIRSF PIRSF000243 13 481 1.7E-126 T 17-10-2018 IPR003321 Cytochrome c552 GO:0006807|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 VI35_11780 012ef55cf7b3a65516a45a968b6937d1 481 Gene3D G3DSA:1.10.1130.10 46 474 1.1E-189 T 17-10-2018 VI35_16590 26517cf267437e17e63a2906512480a8 305 Pfam PF01715 IPP transferase 38 283 1.5E-85 T 17-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 VI35_16590 26517cf267437e17e63a2906512480a8 305 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 4 290 3.3E-113 T 17-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 VI35_16590 26517cf267437e17e63a2906512480a8 305 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 4 300 30.131 T 17-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 VI35_16590 26517cf267437e17e63a2906512480a8 305 Gene3D G3DSA:1.10.20.140 111 182 4.2E-105 T 17-10-2018 VI35_16590 26517cf267437e17e63a2906512480a8 305 SUPERFAMILY SSF52540 5 147 2.1E-19 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_16590 26517cf267437e17e63a2906512480a8 305 Gene3D G3DSA:3.40.50.300 8 287 4.2E-105 T 17-10-2018 VI35_02235 05b80600719a22511d572abb34914537 361 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 25 359 24.635 T 17-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VI35_02235 05b80600719a22511d572abb34914537 361 ProSitePatterns PS01348 MraY family signature 2. 189 200 - T 17-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VI35_02235 05b80600719a22511d572abb34914537 361 Pfam PF00953 Glycosyl transferase family 4 99 283 1.2E-34 T 17-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 VI35_02235 05b80600719a22511d572abb34914537 361 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 68 80 9.9E-5 T 17-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VI35_02235 05b80600719a22511d572abb34914537 361 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 38 361 4.2E-150 T 17-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VI35_02235 05b80600719a22511d572abb34914537 361 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 17-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VI35_14445 09f25d7de1c44582789f6e148f1f635e 155 Gene3D G3DSA:3.40.630.30 6 153 6.4E-34 T 17-10-2018 VI35_14445 09f25d7de1c44582789f6e148f1f635e 155 Pfam PF13508 Acetyltransferase (GNAT) domain 36 114 2.4E-10 T 17-10-2018 IPR000182 GNAT domain VI35_14445 09f25d7de1c44582789f6e148f1f635e 155 SUPERFAMILY SSF55729 9 147 1.27E-24 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_10410 d104a12b903e0e9d737c2f0ce9fd930c 320 SUPERFAMILY SSF53300 80 272 1.78E-33 T 17-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VI35_10410 d104a12b903e0e9d737c2f0ce9fd930c 320 Pfam PF00092 von Willebrand factor type A domain 82 269 3.2E-20 T 17-10-2018 IPR002035 von Willebrand factor, type A VI35_10410 d104a12b903e0e9d737c2f0ce9fd930c 320 SMART SM00327 80 270 5.3E-25 T 17-10-2018 IPR002035 von Willebrand factor, type A VI35_10410 d104a12b903e0e9d737c2f0ce9fd930c 320 Gene3D G3DSA:3.40.50.410 80 277 4.2E-47 T 17-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VI35_16255 dc839c2b08050439d844820884e28186 284 SMART SM00978 154 283 5.7E-38 T 17-10-2018 IPR007379 Tim44-like domain VI35_16255 dc839c2b08050439d844820884e28186 284 Gene3D G3DSA:3.10.450.240 161 283 5.3E-13 T 17-10-2018 VI35_16255 dc839c2b08050439d844820884e28186 284 SUPERFAMILY SSF54427 161 283 1.11E-22 T 17-10-2018 IPR032710 NTF2-like domain superfamily VI35_16255 dc839c2b08050439d844820884e28186 284 Pfam PF04280 Tim44-like domain 162 283 1.9E-19 T 17-10-2018 IPR007379 Tim44-like domain VI35_20100 916f2a9039fa7529aa3455408024897e 217 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 16 199 27.12 T 17-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 VI35_20100 916f2a9039fa7529aa3455408024897e 217 SUPERFAMILY SSF52540 18 199 1.11E-31 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_20100 916f2a9039fa7529aa3455408024897e 217 Gene3D G3DSA:3.40.50.300 4 211 2.0E-56 T 17-10-2018 VI35_20100 916f2a9039fa7529aa3455408024897e 217 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 12 195 4.9E-73 T 17-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 VI35_20100 916f2a9039fa7529aa3455408024897e 217 Pfam PF01926 50S ribosome-binding GTPase 30 148 7.7E-19 T 17-10-2018 IPR006073 GTP binding domain GO:0005525 VI35_18110 fdd4201726b88ab26b2ae985998ddff6 139 Pfam PF14467 Domain of unknown function (DUF4426) 24 139 5.2E-44 T 17-10-2018 IPR025218 Domain of unknown function DUF4426 VI35_18110 fdd4201726b88ab26b2ae985998ddff6 139 Gene3D G3DSA:2.60.40.3340 14 139 2.7E-40 T 17-10-2018 VI35_11245 b65f0b2cfbaa1a4a7003bfb65879bfcb 136 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 12 133 1.6E-17 T 17-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like VI35_11245 b65f0b2cfbaa1a4a7003bfb65879bfcb 136 SUPERFAMILY SSF55961 2 133 2.6E-24 T 17-10-2018 VI35_11245 b65f0b2cfbaa1a4a7003bfb65879bfcb 136 Gene3D G3DSA:3.30.530.20 1 135 8.8E-35 T 17-10-2018 IPR023393 START-like domain superfamily VI35_17370 63128d1589fc4c4befb0d6d0d0c1c779 518 PIRSF PIRSF006446 2 334 1.1E-117 T 17-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 VI35_17370 63128d1589fc4c4befb0d6d0d0c1c779 518 PIRSF PIRSF006446 356 517 7.2E-32 T 17-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 VI35_17370 63128d1589fc4c4befb0d6d0d0c1c779 518 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 9 503 3.9E-179 T 17-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 VI35_10065 4849eb82c295c62ba55274cc67fdb915 342 Pfam PF12706 Beta-lactamase superfamily domain 98 290 6.8E-45 T 17-10-2018 IPR001279 Metallo-beta-lactamase VI35_10065 4849eb82c295c62ba55274cc67fdb915 342 Gene3D G3DSA:3.60.15.10 67 333 2.3E-80 T 17-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VI35_10065 4849eb82c295c62ba55274cc67fdb915 342 SUPERFAMILY SSF56281 80 330 2.49E-35 T 17-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VI35_05140 0413e76c6d0a89e5e93ceab82a9290ad 293 Gene3D G3DSA:3.40.190.10 90 282 1.2E-32 T 17-10-2018 VI35_05140 0413e76c6d0a89e5e93ceab82a9290ad 293 SUPERFAMILY SSF46785 1 79 3.18E-19 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_05140 0413e76c6d0a89e5e93ceab82a9290ad 293 SUPERFAMILY SSF53850 90 290 1.09E-22 T 17-10-2018 VI35_05140 0413e76c6d0a89e5e93ceab82a9290ad 293 Gene3D G3DSA:1.10.10.10 1 86 1.9E-23 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_05140 0413e76c6d0a89e5e93ceab82a9290ad 293 Gene3D G3DSA:3.40.190.10 162 264 1.2E-32 T 17-10-2018 VI35_05140 0413e76c6d0a89e5e93ceab82a9290ad 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 5.5E-17 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_05140 0413e76c6d0a89e5e93ceab82a9290ad 293 Pfam PF03466 LysR substrate binding domain 89 288 9.0E-23 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_05140 0413e76c6d0a89e5e93ceab82a9290ad 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 6.6E-8 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_05140 0413e76c6d0a89e5e93ceab82a9290ad 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 6.6E-8 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_05140 0413e76c6d0a89e5e93ceab82a9290ad 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 6.6E-8 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_07455 07043ea1a0bf1ec975387aaef549305a 228 SUPERFAMILY SSF53756 86 163 2.32E-6 T 17-10-2018 VI35_07455 07043ea1a0bf1ec975387aaef549305a 228 Gene3D G3DSA:3.40.50.2000 50 172 5.1E-23 T 17-10-2018 VI35_05230 5cf73aa61262c3c854edc3f6591b6ddc 230 Gene3D G3DSA:3.40.50.2300 1 121 7.6E-37 T 17-10-2018 VI35_05230 5cf73aa61262c3c854edc3f6591b6ddc 230 SUPERFAMILY SSF46894 118 215 9.07E-25 T 17-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VI35_05230 5cf73aa61262c3c854edc3f6591b6ddc 230 Pfam PF00072 Response regulator receiver domain 3 112 2.0E-24 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_05230 5cf73aa61262c3c854edc3f6591b6ddc 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 215 2.0E-20 T 17-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VI35_05230 5cf73aa61262c3c854edc3f6591b6ddc 230 SMART SM00862 145 216 5.2E-24 T 17-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VI35_05230 5cf73aa61262c3c854edc3f6591b6ddc 230 SUPERFAMILY SSF52172 1 133 1.42E-35 T 17-10-2018 IPR011006 CheY-like superfamily VI35_05230 5cf73aa61262c3c854edc3f6591b6ddc 230 Gene3D G3DSA:1.10.10.10 122 223 3.9E-27 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_05230 5cf73aa61262c3c854edc3f6591b6ddc 230 SMART SM00448 1 112 5.4E-34 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_00730 594edbad46a3272f13c0e0dabac2c6e6 329 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 223 239 - T 17-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site VI35_00730 594edbad46a3272f13c0e0dabac2c6e6 329 Gene3D G3DSA:3.40.50.720 2 317 1.1E-137 T 17-10-2018 VI35_00730 594edbad46a3272f13c0e0dabac2c6e6 329 SUPERFAMILY SSF52283 2 135 2.76E-42 T 17-10-2018 VI35_00730 594edbad46a3272f13c0e0dabac2c6e6 329 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 297 1.4E-52 T 17-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 VI35_00730 594edbad46a3272f13c0e0dabac2c6e6 329 Gene3D G3DSA:3.40.50.720 102 297 1.1E-137 T 17-10-2018 VI35_00730 594edbad46a3272f13c0e0dabac2c6e6 329 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 194 216 - T 17-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site VI35_00730 594edbad46a3272f13c0e0dabac2c6e6 329 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 3 328 3.4E-32 T 17-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 VI35_00730 594edbad46a3272f13c0e0dabac2c6e6 329 SUPERFAMILY SSF51735 102 298 1.18E-54 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_07585 3702af01509c33a30a1aff2907b82a0a 404 Gene3D G3DSA:3.90.1150.10 22 398 4.9E-143 T 17-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VI35_07585 3702af01509c33a30a1aff2907b82a0a 404 Gene3D G3DSA:3.40.640.10 53 294 4.9E-143 T 17-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VI35_07585 3702af01509c33a30a1aff2907b82a0a 404 Pfam PF00155 Aminotransferase class I and II 35 395 4.9E-48 T 17-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 VI35_07585 3702af01509c33a30a1aff2907b82a0a 404 SUPERFAMILY SSF53383 5 400 1.16E-97 T 17-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VI35_06800 f30d2da0a21926624046a55a376d9265 570 PIRSF PIRSF003167 1 570 1.6E-157 T 17-10-2018 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing GO:0000155|GO:0000160|GO:0004673|GO:0016021 VI35_06800 f30d2da0a21926624046a55a376d9265 570 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 38 124 1.3E-17 T 17-10-2018 IPR029095 NarX-like, N-terminal VI35_06800 f30d2da0a21926624046a55a376d9265 570 Gene3D G3DSA:3.30.565.10 432 566 2.3E-26 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_06800 f30d2da0a21926624046a55a376d9265 570 SMART SM00387 472 566 1.5E-13 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_06800 f30d2da0a21926624046a55a376d9265 570 SUPERFAMILY SSF55874 465 564 4.58E-18 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_06800 f30d2da0a21926624046a55a376d9265 570 SMART SM00304 176 228 2.4E-7 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_06800 f30d2da0a21926624046a55a376d9265 570 Pfam PF07730 Histidine kinase 367 431 1.8E-17 T 17-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 VI35_06800 f30d2da0a21926624046a55a376d9265 570 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 475 564 1.2E-10 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_06800 f30d2da0a21926624046a55a376d9265 570 Gene3D G3DSA:1.10.287.130 174 285 1.9E-5 T 17-10-2018 VI35_06800 f30d2da0a21926624046a55a376d9265 570 SUPERFAMILY SSF158472 178 225 3.79E-6 T 17-10-2018 VI35_06800 f30d2da0a21926624046a55a376d9265 570 Gene3D G3DSA:1.20.120.960 41 148 2.6E-12 T 17-10-2018 VI35_16090 2a83fe9bac5860e5be32a744999c62d8 49 Pfam PF11346 Protein of unknown function (DUF3149) 4 43 8.0E-16 T 17-10-2018 IPR021494 Protein of unknown function DUF3149 VI35_15510 919cb5c09fecb5603a845a5e734a6bea 450 SMART SM00228 211 280 1.5E-9 T 17-10-2018 IPR001478 PDZ domain GO:0005515 VI35_15510 919cb5c09fecb5603a845a5e734a6bea 450 SMART SM00228 116 186 0.12 T 17-10-2018 IPR001478 PDZ domain GO:0005515 VI35_15510 919cb5c09fecb5603a845a5e734a6bea 450 Pfam PF02163 Peptidase family M50 10 438 1.5E-87 T 17-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 VI35_15510 919cb5c09fecb5603a845a5e734a6bea 450 Pfam PF13180 PDZ domain 225 287 3.6E-7 T 17-10-2018 IPR001478 PDZ domain GO:0005515 VI35_15510 919cb5c09fecb5603a845a5e734a6bea 450 SUPERFAMILY SSF50156 88 189 4.34E-13 T 17-10-2018 IPR036034 PDZ superfamily GO:0005515 VI35_15510 919cb5c09fecb5603a845a5e734a6bea 450 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 4 450 1.1E-140 T 17-10-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 VI35_15510 919cb5c09fecb5603a845a5e734a6bea 450 Gene3D G3DSA:2.30.42.10 126 219 1.4E-27 T 17-10-2018 VI35_15510 919cb5c09fecb5603a845a5e734a6bea 450 Gene3D G3DSA:2.30.42.10 221 309 1.8E-22 T 17-10-2018 VI35_15510 919cb5c09fecb5603a845a5e734a6bea 450 SUPERFAMILY SSF50156 197 290 1.84E-17 T 17-10-2018 IPR036034 PDZ superfamily GO:0005515 VI35_14960 8fac1a420f1e4a6f63ff99bee77c022e 173 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 2 153 46.488 T 17-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 VI35_14960 8fac1a420f1e4a6f63ff99bee77c022e 173 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 4 150 4.4E-61 T 17-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 VI35_14960 8fac1a420f1e4a6f63ff99bee77c022e 173 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 4 155 6.2E-68 T 17-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 VI35_14960 8fac1a420f1e4a6f63ff99bee77c022e 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 107 126 4.6E-39 T 17-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 VI35_14960 8fac1a420f1e4a6f63ff99bee77c022e 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 61 77 4.6E-39 T 17-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 VI35_14960 8fac1a420f1e4a6f63ff99bee77c022e 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 5 18 4.6E-39 T 17-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 VI35_14960 8fac1a420f1e4a6f63ff99bee77c022e 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 138 150 4.6E-39 T 17-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 VI35_14960 8fac1a420f1e4a6f63ff99bee77c022e 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 83 99 4.6E-39 T 17-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 VI35_14960 8fac1a420f1e4a6f63ff99bee77c022e 173 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 113 147 - T 17-10-2018 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 VI35_14960 8fac1a420f1e4a6f63ff99bee77c022e 173 SUPERFAMILY SSF53098 3 156 8.34E-52 T 17-10-2018 IPR012337 Ribonuclease H-like superfamily VI35_14960 8fac1a420f1e4a6f63ff99bee77c022e 173 Gene3D G3DSA:3.30.420.10 2 159 6.9E-50 T 17-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VI35_18360 fad1efb939952dc5127f76607cd2b5ef 450 SUPERFAMILY SSF50249 4 59 2.51E-10 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_18360 fad1efb939952dc5127f76607cd2b5ef 450 SUPERFAMILY SSF53335 75 444 4.6E-79 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_18360 fad1efb939952dc5127f76607cd2b5ef 450 Gene3D G3DSA:3.40.1350.30 125 278 1.3E-111 T 17-10-2018 VI35_18360 fad1efb939952dc5127f76607cd2b5ef 450 Gene3D G3DSA:2.40.50.140 4 77 8.5E-15 T 17-10-2018 VI35_18360 fad1efb939952dc5127f76607cd2b5ef 450 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 236 441 3.4E-17 T 17-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 VI35_18360 fad1efb939952dc5127f76607cd2b5ef 450 Gene3D G3DSA:3.40.50.150 79 441 1.3E-111 T 17-10-2018 VI35_18360 fad1efb939952dc5127f76607cd2b5ef 450 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 15 439 8.0E-131 T 17-10-2018 VI35_18360 fad1efb939952dc5127f76607cd2b5ef 450 Pfam PF01938 TRAM domain 4 58 1.1E-7 T 17-10-2018 IPR002792 TRAM domain VI35_18360 fad1efb939952dc5127f76607cd2b5ef 450 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 429 439 - T 17-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site VI35_18360 fad1efb939952dc5127f76607cd2b5ef 450 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 377 408 - T 17-10-2018 IPR030390 RNA methyltransferase TrmA, active site VI35_00625 c75fd6558970131e0b7e8f83349ad78b 179 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 8 21 1.7E-7 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_00625 c75fd6558970131e0b7e8f83349ad78b 179 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 29 52 1.7E-7 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_00625 c75fd6558970131e0b7e8f83349ad78b 179 Pfam PF00440 Bacterial regulatory proteins, tetR family 8 54 2.3E-16 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_00625 c75fd6558970131e0b7e8f83349ad78b 179 Gene3D G3DSA:1.10.357.10 1 178 1.9E-54 T 17-10-2018 VI35_00625 c75fd6558970131e0b7e8f83349ad78b 179 SUPERFAMILY SSF46689 3 77 8.21E-19 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_00625 c75fd6558970131e0b7e8f83349ad78b 179 SUPERFAMILY SSF48498 77 168 3.06E-15 T 17-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VI35_10935 e18a7474ef1190c5e983ee19b0f66ef7 73 Pfam PF11197 Protein of unknown function (DUF2835) 4 71 2.7E-23 T 17-10-2018 IPR021363 Protein of unknown function DUF2835 VI35_00385 30dbcdb392fecbe59fcc029184e52944 549 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 497 514 - T 17-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_00385 30dbcdb392fecbe59fcc029184e52944 549 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 46 524 42.335 T 17-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_00385 30dbcdb392fecbe59fcc029184e52944 549 Pfam PF00342 Phosphoglucose isomerase 52 541 9.4E-252 T 17-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_00385 30dbcdb392fecbe59fcc029184e52944 549 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 265 278 - T 17-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_00385 30dbcdb392fecbe59fcc029184e52944 549 Gene3D G3DSA:1.10.1390.10 507 548 1.8E-18 T 17-10-2018 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_00385 30dbcdb392fecbe59fcc029184e52944 549 Gene3D G3DSA:3.40.50.10490 290 506 2.4E-110 T 17-10-2018 VI35_00385 30dbcdb392fecbe59fcc029184e52944 549 SUPERFAMILY SSF53697 5 547 8.62E-226 T 17-10-2018 VI35_00385 30dbcdb392fecbe59fcc029184e52944 549 PRINTS PR00662 Glucose-6-phosphate isomerase signature 338 359 1.4E-55 T 17-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_00385 30dbcdb392fecbe59fcc029184e52944 549 PRINTS PR00662 Glucose-6-phosphate isomerase signature 150 169 1.4E-55 T 17-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_00385 30dbcdb392fecbe59fcc029184e52944 549 PRINTS PR00662 Glucose-6-phosphate isomerase signature 261 279 1.4E-55 T 17-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_00385 30dbcdb392fecbe59fcc029184e52944 549 PRINTS PR00662 Glucose-6-phosphate isomerase signature 483 497 1.4E-55 T 17-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_00385 30dbcdb392fecbe59fcc029184e52944 549 PRINTS PR00662 Glucose-6-phosphate isomerase signature 497 510 1.4E-55 T 17-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_00385 30dbcdb392fecbe59fcc029184e52944 549 PRINTS PR00662 Glucose-6-phosphate isomerase signature 465 483 1.4E-55 T 17-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VI35_00385 30dbcdb392fecbe59fcc029184e52944 549 Gene3D G3DSA:3.40.50.10490 103 289 1.4E-90 T 17-10-2018 VI35_00385 30dbcdb392fecbe59fcc029184e52944 549 Gene3D G3DSA:3.40.50.10490 1 102 1.8E-34 T 17-10-2018 VI35_11010 24fce6786787b3112f2976a213bd5b6d 315 SUPERFAMILY SSF52402 4 156 2.51E-31 T 17-10-2018 VI35_11010 24fce6786787b3112f2976a213bd5b6d 315 Gene3D G3DSA:3.40.50.12370 1 312 8.0E-113 T 17-10-2018 VI35_11010 24fce6786787b3112f2976a213bd5b6d 315 SUPERFAMILY SSF52402 156 307 7.53E-26 T 17-10-2018 VI35_11010 24fce6786787b3112f2976a213bd5b6d 315 Pfam PF00582 Universal stress protein family 177 300 6.6E-13 T 17-10-2018 IPR006016 UspA VI35_11010 24fce6786787b3112f2976a213bd5b6d 315 Pfam PF00582 Universal stress protein family 4 147 4.3E-21 T 17-10-2018 IPR006016 UspA VI35_02810 d14eeac7c3ee7329d9dfc6c7c4b947bb 221 Pfam PF07729 FCD domain 80 205 5.4E-18 T 17-10-2018 IPR011711 GntR, C-terminal VI35_02810 d14eeac7c3ee7329d9dfc6c7c4b947bb 221 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 70 3.8E-15 T 17-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VI35_02810 d14eeac7c3ee7329d9dfc6c7c4b947bb 221 Gene3D G3DSA:1.10.10.10 1 71 1.6E-19 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_02810 d14eeac7c3ee7329d9dfc6c7c4b947bb 221 SUPERFAMILY SSF46785 6 84 3.98E-17 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_02810 d14eeac7c3ee7329d9dfc6c7c4b947bb 221 Gene3D G3DSA:1.20.120.530 76 219 4.6E-22 T 17-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal VI35_02810 d14eeac7c3ee7329d9dfc6c7c4b947bb 221 SMART SM00895 80 206 1.5E-11 T 17-10-2018 IPR011711 GntR, C-terminal VI35_02810 d14eeac7c3ee7329d9dfc6c7c4b947bb 221 SUPERFAMILY SSF48008 78 214 4.18E-19 T 17-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal VI35_02810 d14eeac7c3ee7329d9dfc6c7c4b947bb 221 SMART SM00345 12 70 5.0E-13 T 17-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VI35_19005 d7beae2b5735a3c43b25adbaec657552 156 Pfam PF01037 Lrp/AsnC ligand binding domain 71 143 2.7E-14 T 17-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain VI35_19005 d7beae2b5735a3c43b25adbaec657552 156 Gene3D G3DSA:1.10.10.10 1 57 2.3E-17 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_19005 d7beae2b5735a3c43b25adbaec657552 156 Gene3D G3DSA:3.30.70.920 58 141 1.2E-19 T 17-10-2018 VI35_19005 d7beae2b5735a3c43b25adbaec657552 156 Pfam PF13412 Winged helix-turn-helix DNA-binding 4 51 5.1E-15 T 17-10-2018 VI35_19005 d7beae2b5735a3c43b25adbaec657552 156 SUPERFAMILY SSF54909 66 148 2.95E-15 T 17-10-2018 IPR011008 Dimeric alpha-beta barrel VI35_19005 d7beae2b5735a3c43b25adbaec657552 156 SMART SM00344 4 113 8.1E-26 T 17-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 VI35_19005 d7beae2b5735a3c43b25adbaec657552 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 4.5E-11 T 17-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VI35_19005 d7beae2b5735a3c43b25adbaec657552 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 4.5E-11 T 17-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VI35_19005 d7beae2b5735a3c43b25adbaec657552 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 4.5E-11 T 17-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VI35_19005 d7beae2b5735a3c43b25adbaec657552 156 SUPERFAMILY SSF46785 3 63 2.93E-15 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_05160 ecfbbb7b8a2dc4a47b8ea1105ee5e88e 200 Pfam PF00881 Nitroreductase family 9 178 2.7E-15 T 17-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 VI35_05160 ecfbbb7b8a2dc4a47b8ea1105ee5e88e 200 Gene3D G3DSA:3.40.109.10 2 200 6.7E-84 T 17-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 VI35_05160 ecfbbb7b8a2dc4a47b8ea1105ee5e88e 200 SUPERFAMILY SSF55469 4 199 2.75E-71 T 17-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 VI35_17935 7ecdd585780c5a373c9655e832c8b670 115 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 2 114 31.594 T 17-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_17935 7ecdd585780c5a373c9655e832c8b670 115 ProSitePatterns PS01015 Ribosomal protein L19 signature. 86 101 - T 17-10-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_17935 7ecdd585780c5a373c9655e832c8b670 115 PRINTS PR00061 Ribosomal protein L19 signature 34 63 2.2E-42 T 17-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_17935 7ecdd585780c5a373c9655e832c8b670 115 PRINTS PR00061 Ribosomal protein L19 signature 88 113 2.2E-42 T 17-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_17935 7ecdd585780c5a373c9655e832c8b670 115 PRINTS PR00061 Ribosomal protein L19 signature 4 33 2.2E-42 T 17-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_17935 7ecdd585780c5a373c9655e832c8b670 115 Pfam PF01245 Ribosomal protein L19 4 113 1.4E-50 T 17-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_17935 7ecdd585780c5a373c9655e832c8b670 115 Gene3D G3DSA:2.30.30.790 2 115 4.7E-14 T 17-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_17935 7ecdd585780c5a373c9655e832c8b670 115 SUPERFAMILY SSF50104 2 114 7.62E-47 T 17-10-2018 IPR008991 Translation protein SH3-like domain superfamily VI35_17935 7ecdd585780c5a373c9655e832c8b670 115 PIRSF PIRSF002191 1 115 5.3E-50 T 17-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_17935 7ecdd585780c5a373c9655e832c8b670 115 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 3 113 2.7E-51 T 17-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_21055 44bc5c70f61a08ff8c12fc7a2df31254 176 Pfam PF01618 MotA/TolQ/ExbB proton channel family 68 164 1.4E-20 T 17-10-2018 IPR002898 MotA/TolQ/ExbB proton channel VI35_05740 ad934d0a6effa5376f9ca9d8e4bffc3d 177 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 41 172 5.4E-39 T 17-10-2018 IPR005247 YbhB/YbcL VI35_05740 ad934d0a6effa5376f9ca9d8e4bffc3d 177 Gene3D G3DSA:3.90.280.10 14 176 8.0E-53 T 17-10-2018 IPR036610 PEBP-like superfamily VI35_05740 ad934d0a6effa5376f9ca9d8e4bffc3d 177 Pfam PF01161 Phosphatidylethanolamine-binding protein 47 174 7.2E-35 T 17-10-2018 IPR008914 Phosphatidylethanolamine-binding protein VI35_05740 ad934d0a6effa5376f9ca9d8e4bffc3d 177 SUPERFAMILY SSF49777 22 175 1.83E-48 T 17-10-2018 IPR036610 PEBP-like superfamily VI35_20205 a12ee0b623ebcfb994c95a7aa75fd644 442 Gene3D G3DSA:3.40.640.10 64 344 1.0E-149 T 17-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VI35_20205 a12ee0b623ebcfb994c95a7aa75fd644 442 SUPERFAMILY SSF53383 15 439 3.94E-121 T 17-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VI35_20205 a12ee0b623ebcfb994c95a7aa75fd644 442 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 252 289 - T 17-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VI35_20205 a12ee0b623ebcfb994c95a7aa75fd644 442 Gene3D G3DSA:3.90.1150.10 28 432 1.0E-149 T 17-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VI35_20205 a12ee0b623ebcfb994c95a7aa75fd644 442 Pfam PF00202 Aminotransferase class-III 28 438 1.7E-92 T 17-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VI35_01115 617ee6d04260f47a9967e2716392cc2b 245 SUPERFAMILY SSF64438 2 244 2.56E-87 T 17-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic VI35_01115 617ee6d04260f47a9967e2716392cc2b 245 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 30 243 1.1E-61 T 17-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase VI35_01115 617ee6d04260f47a9967e2716392cc2b 245 Gene3D G3DSA:3.60.140.10 1 245 1.1E-94 T 17-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily VI35_01115 617ee6d04260f47a9967e2716392cc2b 245 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 19 242 2.2E-78 T 17-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase VI35_12660 caa67971caa3efefde408d688088df49 339 Hamap MF_01962 Adenine deaminase. 4 316 80.639 T 17-10-2018 IPR028892 Adenine deaminase type 2 GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 VI35_12660 caa67971caa3efefde408d688088df49 339 Gene3D G3DSA:3.20.20.140 1 333 3.9E-100 T 17-10-2018 VI35_12660 caa67971caa3efefde408d688088df49 339 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 8 324 2.1E-109 T 17-10-2018 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 VI35_12660 caa67971caa3efefde408d688088df49 339 Pfam PF00962 Adenosine/AMP deaminase 8 323 2.2E-71 T 17-10-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 VI35_12660 caa67971caa3efefde408d688088df49 339 SUPERFAMILY SSF51556 3 329 1.58E-84 T 17-10-2018 IPR032466 Metal-dependent hydrolase VI35_02400 15cf07cb17250b3e0719e5e8043ecba0 523 Pfam PF00563 EAL domain 264 498 1.3E-59 T 17-10-2018 IPR001633 EAL domain VI35_02400 15cf07cb17250b3e0719e5e8043ecba0 523 SUPERFAMILY SSF141868 263 508 6.41E-73 T 17-10-2018 IPR035919 EAL domain superfamily VI35_02400 15cf07cb17250b3e0719e5e8043ecba0 523 SMART SM00052 257 503 1.5E-95 T 17-10-2018 IPR001633 EAL domain VI35_02400 15cf07cb17250b3e0719e5e8043ecba0 523 Pfam PF12792 CSS motif domain associated with EAL 43 227 5.4E-34 T 17-10-2018 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain VI35_02400 15cf07cb17250b3e0719e5e8043ecba0 523 Gene3D G3DSA:3.20.20.450 258 514 1.4E-79 T 17-10-2018 IPR035919 EAL domain superfamily VI35_11230 eb01f4628c676023b0204d422447db0e 362 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 17-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 VI35_11230 eb01f4628c676023b0204d422447db0e 362 Hamap MF_00300 Chorismate synthase [aroC]. 10 352 37.576 T 17-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 VI35_11230 eb01f4628c676023b0204d422447db0e 362 PIRSF PIRSF001456 3 361 1.8E-142 T 17-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 VI35_11230 eb01f4628c676023b0204d422447db0e 362 Gene3D G3DSA:3.60.150.10 1 361 1.1E-158 T 17-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 VI35_11230 eb01f4628c676023b0204d422447db0e 362 ProSitePatterns PS00789 Chorismate synthase signature 3. 319 335 - T 17-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 VI35_11230 eb01f4628c676023b0204d422447db0e 362 TIGRFAM TIGR00033 aroC: chorismate synthase 10 350 1.1E-143 T 17-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 VI35_11230 eb01f4628c676023b0204d422447db0e 362 Pfam PF01264 Chorismate synthase 10 345 4.6E-143 T 17-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 VI35_11230 eb01f4628c676023b0204d422447db0e 362 SUPERFAMILY SSF103263 4 355 8.37E-149 T 17-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 VI35_11230 eb01f4628c676023b0204d422447db0e 362 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 17-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 VI35_19440 4973513a9cedef18ab6f201834577734 219 Pfam PF07963 Prokaryotic N-terminal methylation motif 16 38 1.5E-5 T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_19440 4973513a9cedef18ab6f201834577734 219 Gene3D G3DSA:3.30.700.10 18 177 6.8E-13 T 17-10-2018 VI35_19440 4973513a9cedef18ab6f201834577734 219 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 16 38 7.7E-6 T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_19440 4973513a9cedef18ab6f201834577734 219 SUPERFAMILY SSF54523 18 120 1.65E-13 T 17-10-2018 VI35_19440 4973513a9cedef18ab6f201834577734 219 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 16 36 - T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_15870 0ebf2e1939f513c3c09d971049bc0fcf 549 Gene3D G3DSA:1.20.1270.20 148 231 1.3E-24 T 17-10-2018 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 VI35_15870 0ebf2e1939f513c3c09d971049bc0fcf 549 TIGRFAM TIGR01703 hybrid_clust: hydroxylamine reductase 1 547 1.3E-225 T 17-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 VI35_15870 0ebf2e1939f513c3c09d971049bc0fcf 549 Gene3D G3DSA:1.20.1270.20 1 137 3.6E-38 T 17-10-2018 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 VI35_15870 0ebf2e1939f513c3c09d971049bc0fcf 549 Hamap MF_00069 Hydroxylamine reductase [hcp]. 1 548 20.672 T 17-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 VI35_15870 0ebf2e1939f513c3c09d971049bc0fcf 549 PIRSF PIRSF000076 1 549 4.8E-238 T 17-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 VI35_15870 0ebf2e1939f513c3c09d971049bc0fcf 549 Gene3D G3DSA:3.40.50.2030 379 547 2.7E-61 T 17-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 VI35_15870 0ebf2e1939f513c3c09d971049bc0fcf 549 Gene3D G3DSA:3.40.50.2030 233 378 1.2E-59 T 17-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 VI35_15870 0ebf2e1939f513c3c09d971049bc0fcf 549 Pfam PF03063 Prismane/CO dehydrogenase family 1 543 1.9E-163 T 17-10-2018 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase GO:0016491|GO:0055114 KEGG: 00910+1.7.99.1 VI35_15870 0ebf2e1939f513c3c09d971049bc0fcf 549 SUPERFAMILY SSF56821 1 547 4.06E-192 T 17-10-2018 IPR011254 Prismane-like superfamily GO:0003824|GO:0016491|GO:0055114 VI35_16215 8fa945c9b7370d240183393bb0defe64 355 SUPERFAMILY SSF111369 54 288 5.75E-11 T 17-10-2018 VI35_16215 8fa945c9b7370d240183393bb0defe64 355 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 57 291 1.3E-16 T 17-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VI35_16215 8fa945c9b7370d240183393bb0defe64 355 Gene3D G3DSA:2.40.50.100 56 126 2.0E-10 T 17-10-2018 VI35_16215 8fa945c9b7370d240183393bb0defe64 355 Gene3D G3DSA:2.40.30.170 231 347 8.0E-38 T 17-10-2018 VI35_13865 c3f87cad9cc2f117ac2f665f6c74ad63 353 SMART SM00116 70 118 1.1 T 17-10-2018 IPR000644 CBS domain VI35_13865 c3f87cad9cc2f117ac2f665f6c74ad63 353 SMART SM00116 6 54 0.011 T 17-10-2018 IPR000644 CBS domain VI35_13865 c3f87cad9cc2f117ac2f665f6c74ad63 353 Gene3D G3DSA:3.90.550.10 122 348 2.5E-59 T 17-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VI35_13865 c3f87cad9cc2f117ac2f665f6c74ad63 353 Gene3D G3DSA:3.10.580.10 1 116 1.7E-23 T 17-10-2018 VI35_13865 c3f87cad9cc2f117ac2f665f6c74ad63 353 SUPERFAMILY SSF53448 48 346 3.99E-68 T 17-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VI35_13865 c3f87cad9cc2f117ac2f665f6c74ad63 353 Pfam PF00483 Nucleotidyl transferase 125 346 1.5E-34 T 17-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 VI35_13865 c3f87cad9cc2f117ac2f665f6c74ad63 353 SUPERFAMILY SSF54631 7 56 1.98E-7 T 17-10-2018 VI35_13865 c3f87cad9cc2f117ac2f665f6c74ad63 353 Pfam PF00571 CBS domain 63 107 5.7E-6 T 17-10-2018 IPR000644 CBS domain VI35_13865 c3f87cad9cc2f117ac2f665f6c74ad63 353 Pfam PF00571 CBS domain 8 54 5.5E-6 T 17-10-2018 IPR000644 CBS domain VI35_10330 e2fd156357cfcbd601bb12e83bd5af58 92 ProDom PD030374 YCGL UNCHARACTERIZED SIMILAR BACTERIA HI1446 Y2231 HYDROLASE CYTOPLASMIC YPO2080 SO2575 1 82 2.0E-21 T 17-10-2018 IPR027354 YcgL domain VI35_10330 e2fd156357cfcbd601bb12e83bd5af58 92 Pfam PF05166 YcgL domain 3 75 4.5E-29 T 17-10-2018 IPR027354 YcgL domain VI35_10330 e2fd156357cfcbd601bb12e83bd5af58 92 Gene3D G3DSA:3.10.510.20 1 74 2.5E-27 T 17-10-2018 IPR038068 YcgL-like superfamily VI35_10330 e2fd156357cfcbd601bb12e83bd5af58 92 Hamap MF_01866 Protein YcgL [ycgL]. 1 88 27.105 T 17-10-2018 IPR027354 YcgL domain VI35_10330 e2fd156357cfcbd601bb12e83bd5af58 92 SUPERFAMILY SSF160191 1 89 1.31E-35 T 17-10-2018 IPR038068 YcgL-like superfamily VI35_20195 58826c053f5755b4bfd2b8e6fede4d77 242 SUPERFAMILY SSF52317 42 203 1.53E-38 T 17-10-2018 IPR029062 Class I glutamine amidotransferase-like VI35_20195 58826c053f5755b4bfd2b8e6fede4d77 242 Gene3D G3DSA:3.40.50.880 30 232 2.3E-44 T 17-10-2018 IPR029062 Class I glutamine amidotransferase-like VI35_20195 58826c053f5755b4bfd2b8e6fede4d77 242 Pfam PF00117 Glutamine amidotransferase class-I 54 189 6.9E-11 T 17-10-2018 IPR017926 Glutamine amidotransferase VI35_21160 2ff36e186e15f9a3f8df9b342db34bf4 267 SUPERFAMILY SSF52540 2 254 1.65E-67 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_21160 2ff36e186e15f9a3f8df9b342db34bf4 267 Pfam PF13614 AAA domain 2 178 8.4E-64 T 17-10-2018 IPR025669 AAA domain VI35_21160 2ff36e186e15f9a3f8df9b342db34bf4 267 PIRSF PIRSF009320 2 98 8.1E-15 T 17-10-2018 VI35_21160 2ff36e186e15f9a3f8df9b342db34bf4 267 PIRSF PIRSF009320 90 258 2.1E-8 T 17-10-2018 VI35_21160 2ff36e186e15f9a3f8df9b342db34bf4 267 Gene3D G3DSA:3.40.50.300 1 264 3.1E-78 T 17-10-2018 VI35_01775 a3bafb9f4e401e403b1f5bb95369d141 85 Gene3D G3DSA:3.30.300.90 1 84 4.3E-33 T 17-10-2018 VI35_01775 a3bafb9f4e401e403b1f5bb95369d141 85 PIRSF PIRSF003113 1 85 3.0E-22 T 17-10-2018 IPR002634 BolA protein VI35_01775 a3bafb9f4e401e403b1f5bb95369d141 85 Pfam PF01722 BolA-like protein 19 74 6.9E-14 T 17-10-2018 IPR002634 BolA protein VI35_01775 a3bafb9f4e401e403b1f5bb95369d141 85 SUPERFAMILY SSF82657 1 80 9.81E-28 T 17-10-2018 IPR036065 BolA-like superfamily VI35_03640 d30752c502a2849dc8c12501628bad2e 264 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 4 263 42.107 T 17-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 VI35_03640 d30752c502a2849dc8c12501628bad2e 264 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 1 263 8.9E-111 T 17-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 VI35_03640 d30752c502a2849dc8c12501628bad2e 264 Gene3D G3DSA:3.20.20.60 1 264 5.7E-108 T 17-10-2018 VI35_03640 d30752c502a2849dc8c12501628bad2e 264 SUPERFAMILY SSF51621 3 263 2.47E-106 T 17-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 VI35_03640 d30752c502a2849dc8c12501628bad2e 264 PIRSF PIRSF000388 1 264 8.5E-100 T 17-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 VI35_03640 d30752c502a2849dc8c12501628bad2e 264 Pfam PF02548 Ketopantoate hydroxymethyltransferase 3 258 2.1E-109 T 17-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 VI35_13890 7078981ddc77e35178fd3bf69a1be86d 397 Pfam PF02719 Polysaccharide biosynthesis protein 37 281 2.5E-44 T 17-10-2018 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain VI35_13890 7078981ddc77e35178fd3bf69a1be86d 397 SUPERFAMILY SSF51735 35 285 5.76E-27 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_13890 7078981ddc77e35178fd3bf69a1be86d 397 Gene3D G3DSA:3.90.25.40 202 312 7.8E-158 T 17-10-2018 VI35_13890 7078981ddc77e35178fd3bf69a1be86d 397 Gene3D G3DSA:3.40.50.720 10 372 7.8E-158 T 17-10-2018 VI35_14660 011bf6c23bcfb1f34b771a066dee49c5 581 SUPERFAMILY SSF52540 331 574 2.46E-65 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_14660 011bf6c23bcfb1f34b771a066dee49c5 581 Gene3D G3DSA:1.20.1560.10 4 322 7.3E-28 T 17-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VI35_14660 011bf6c23bcfb1f34b771a066dee49c5 581 SUPERFAMILY SSF90123 7 326 9.16E-39 T 17-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VI35_14660 011bf6c23bcfb1f34b771a066dee49c5 581 SMART SM00382 365 555 4.5E-11 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_14660 011bf6c23bcfb1f34b771a066dee49c5 581 Gene3D G3DSA:3.40.50.300 327 577 3.9E-70 T 17-10-2018 VI35_14660 011bf6c23bcfb1f34b771a066dee49c5 581 TIGRFAM TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit 7 539 8.7E-138 T 17-10-2018 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC GO:0016021|GO:0034775|GO:0042626|GO:0045454 VI35_14660 011bf6c23bcfb1f34b771a066dee49c5 581 ProSitePatterns PS00211 ABC transporters family signature. 481 495 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_14660 011bf6c23bcfb1f34b771a066dee49c5 581 Pfam PF00005 ABC transporter 356 508 1.1E-29 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_04720 c10f2c28d238d70f60c01d0e34151758 222 Hamap MF_01150 Chaperone protein TorD [torD]. 3 212 29.728 T 17-10-2018 IPR023069 Chaperone TorD VI35_04720 c10f2c28d238d70f60c01d0e34151758 222 Gene3D G3DSA:1.20.120.1820 4 126 1.5E-28 T 17-10-2018 VI35_04720 c10f2c28d238d70f60c01d0e34151758 222 SUPERFAMILY SSF89155 8 217 2.49E-42 T 17-10-2018 IPR036411 TorD-like superfamily VI35_04720 c10f2c28d238d70f60c01d0e34151758 222 Pfam PF02613 Nitrate reductase delta subunit 51 181 2.0E-32 T 17-10-2018 IPR020945 DMSO/Nitrate reductase chaperone VI35_04720 c10f2c28d238d70f60c01d0e34151758 222 Gene3D G3DSA:1.20.1280.20 129 219 6.6E-19 T 17-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VI35_19555 5ae0d768b3afbe5a93c8c188e750e3c2 317 Gene3D G3DSA:3.30.70.3040 67 170 5.2E-5 T 17-10-2018 VI35_19555 5ae0d768b3afbe5a93c8c188e750e3c2 317 PIRSF PIRSF003097 19 313 1.8E-71 T 17-10-2018 IPR004513 Cell division protein FtsX GO:0016021 VI35_12705 4bce2f105e8adccfcbaa58cb0c107bc4 217 Gene3D G3DSA:3.40.50.1000 17 200 1.1E-8 T 17-10-2018 IPR023214 HAD superfamily VI35_12705 4bce2f105e8adccfcbaa58cb0c107bc4 217 Gene3D G3DSA:1.20.1440.100 25 95 1.1E-8 T 17-10-2018 VI35_12705 4bce2f105e8adccfcbaa58cb0c107bc4 217 Pfam PF12710 haloacid dehalogenase-like hydrolase 14 184 1.1E-17 T 17-10-2018 VI35_12705 4bce2f105e8adccfcbaa58cb0c107bc4 217 SUPERFAMILY SSF56784 13 195 1.82E-10 T 17-10-2018 IPR036412 HAD-like superfamily VI35_21180 6bc3c52f18b71b6d41cda560d7199bb3 702 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 63 701 1.1E-104 T 17-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 VI35_21180 6bc3c52f18b71b6d41cda560d7199bb3 702 Gene3D G3DSA:2.40.170.20 172 702 5.9E-126 T 17-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VI35_21180 6bc3c52f18b71b6d41cda560d7199bb3 702 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 53 - T 17-10-2018 IPR010916 TonB box, conserved site VI35_21180 6bc3c52f18b71b6d41cda560d7199bb3 702 Gene3D G3DSA:2.170.130.10 41 171 2.9E-30 T 17-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily VI35_21180 6bc3c52f18b71b6d41cda560d7199bb3 702 Pfam PF00593 TonB dependent receptor 255 701 7.8E-56 T 17-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel VI35_21180 6bc3c52f18b71b6d41cda560d7199bb3 702 Pfam PF07715 TonB-dependent Receptor Plug Domain 61 161 2.2E-15 T 17-10-2018 IPR012910 TonB-dependent receptor, plug domain VI35_21180 6bc3c52f18b71b6d41cda560d7199bb3 702 SUPERFAMILY SSF56935 33 702 8.37E-123 T 17-10-2018 VI35_02435 b17dbb35f9b3de1c288055f1282df31d 169 SUPERFAMILY SSF55083 1 152 2.35E-43 T 17-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 VI35_02435 b17dbb35f9b3de1c288055f1282df31d 169 Gene3D G3DSA:3.30.70.560 1 154 3.9E-37 T 17-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 VI35_02435 b17dbb35f9b3de1c288055f1282df31d 169 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 5 129 5.8E-29 T 17-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 VI35_02435 b17dbb35f9b3de1c288055f1282df31d 169 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 129 2.7E-25 T 17-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 VI35_02435 b17dbb35f9b3de1c288055f1282df31d 169 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 85 96 - T 17-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 VI35_15930 7aa859be873686ff3f24d7177a7846dc 295 Gene3D G3DSA:1.10.1660.10 11 84 1.0E-25 T 17-10-2018 VI35_15930 7aa859be873686ff3f24d7177a7846dc 295 SUPERFAMILY SSF46955 17 102 1.79E-19 T 17-10-2018 IPR009061 Putative DNA-binding domain superfamily VI35_15930 7aa859be873686ff3f24d7177a7846dc 295 SMART SM00422 17 86 1.5E-20 T 17-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VI35_15930 7aa859be873686ff3f24d7177a7846dc 295 Pfam PF13411 MerR HTH family regulatory protein 17 85 4.4E-18 T 17-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VI35_09940 312b12207b1ec051cea21f4127ce9f26 551 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 452 472 - T 17-10-2018 IPR018212 Sodium/solute symporter, conserved site VI35_09940 312b12207b1ec051cea21f4127ce9f26 551 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 179 204 - T 17-10-2018 IPR018212 Sodium/solute symporter, conserved site VI35_09940 312b12207b1ec051cea21f4127ce9f26 551 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 64 468 1.8E-59 T 17-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 VI35_09940 312b12207b1ec051cea21f4127ce9f26 551 Pfam PF00474 Sodium:solute symporter family 64 470 2.6E-122 T 17-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 VI35_09940 312b12207b1ec051cea21f4127ce9f26 551 Gene3D G3DSA:1.20.1730.10 51 545 1.3E-56 T 17-10-2018 IPR038377 Sodium/glucose symporter superfamily VI35_16075 0d9d0dff31767e32e008ba5439e9424d 276 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 134 162 - T 17-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 VI35_16075 0d9d0dff31767e32e008ba5439e9424d 276 Pfam PF00106 short chain dehydrogenase 6 190 1.2E-42 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_16075 0d9d0dff31767e32e008ba5439e9424d 276 Gene3D G3DSA:3.40.50.720 5 260 6.3E-60 T 17-10-2018 VI35_16075 0d9d0dff31767e32e008ba5439e9424d 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 8.1E-20 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_16075 0d9d0dff31767e32e008ba5439e9424d 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 8.1E-20 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_16075 0d9d0dff31767e32e008ba5439e9424d 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 8.1E-20 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_16075 0d9d0dff31767e32e008ba5439e9424d 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 8.1E-20 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_16075 0d9d0dff31767e32e008ba5439e9424d 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 8.1E-20 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_16075 0d9d0dff31767e32e008ba5439e9424d 276 SUPERFAMILY SSF51735 5 249 1.13E-55 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_19635 537c5cc25b6d295d76c19e0bc00bb95f 104 SUPERFAMILY SSF54913 6 71 9.56E-5 T 17-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta VI35_19635 537c5cc25b6d295d76c19e0bc00bb95f 104 Pfam PF09413 Putative prokaryotic signal transducing protein 4 71 1.4E-15 T 17-10-2018 IPR018551 Domain of unknown function DUF2007 VI35_14955 23b14d95093e04c20415d956fc2f6abb 228 Gene3D G3DSA:1.20.1080.10 1 228 2.1E-84 T 17-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 VI35_14955 23b14d95093e04c20415d956fc2f6abb 228 Hamap MF_01146 Aquaporin Z [aqpZ]. 1 228 36.22 T 17-10-2018 IPR023743 Aquaporin Z GO:0006833|GO:0015250|GO:0016021|GO:0055085 VI35_14955 23b14d95093e04c20415d956fc2f6abb 228 Pfam PF00230 Major intrinsic protein 2 221 5.4E-50 T 17-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VI35_14955 23b14d95093e04c20415d956fc2f6abb 228 PRINTS PR00783 Major intrinsic protein family signature 42 66 7.2E-54 T 17-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VI35_14955 23b14d95093e04c20415d956fc2f6abb 228 PRINTS PR00783 Major intrinsic protein family signature 135 153 7.2E-54 T 17-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VI35_14955 23b14d95093e04c20415d956fc2f6abb 228 PRINTS PR00783 Major intrinsic protein family signature 204 224 7.2E-54 T 17-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VI35_14955 23b14d95093e04c20415d956fc2f6abb 228 PRINTS PR00783 Major intrinsic protein family signature 79 98 7.2E-54 T 17-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VI35_14955 23b14d95093e04c20415d956fc2f6abb 228 PRINTS PR00783 Major intrinsic protein family signature 2 21 7.2E-54 T 17-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VI35_14955 23b14d95093e04c20415d956fc2f6abb 228 PRINTS PR00783 Major intrinsic protein family signature 165 187 7.2E-54 T 17-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VI35_14955 23b14d95093e04c20415d956fc2f6abb 228 SUPERFAMILY SSF81338 2 225 1.24E-67 T 17-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 VI35_14955 23b14d95093e04c20415d956fc2f6abb 228 ProSitePatterns PS00221 MIP family signature. 60 68 - T 17-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 VI35_14955 23b14d95093e04c20415d956fc2f6abb 228 TIGRFAM TIGR00861 MIP: MIP family channel proteins 6 221 1.9E-59 T 17-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VI35_00265 f13aad57f2d702cbb1d25a6e35b17e15 228 SUPERFAMILY SSF49354 19 143 1.6E-8 T 17-10-2018 IPR008962 PapD-like superfamily VI35_00265 f13aad57f2d702cbb1d25a6e35b17e15 228 Gene3D G3DSA:2.60.40.10 25 147 1.9E-5 T 17-10-2018 IPR013783 Immunoglobulin-like fold VI35_00265 f13aad57f2d702cbb1d25a6e35b17e15 228 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 24 150 1.1E-7 T 17-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 VI35_11315 719189e013676e871bd05decbeb3ba31 161 SUPERFAMILY SSF55729 12 134 1.57E-10 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_11315 719189e013676e871bd05decbeb3ba31 161 Gene3D G3DSA:3.40.630.30 2 152 7.2E-12 T 17-10-2018 VI35_03345 ce6d04af24d500caa7c4db36eea49c85 545 Hamap MF_01227 CTP synthase [pyrG]. 3 540 50.727 T 17-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 VI35_03345 ce6d04af24d500caa7c4db36eea49c85 545 Pfam PF06418 CTP synthase N-terminus 4 265 1.7E-124 T 17-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 VI35_03345 ce6d04af24d500caa7c4db36eea49c85 545 Gene3D G3DSA:3.40.50.880 286 545 3.3E-104 T 17-10-2018 IPR029062 Class I glutamine amidotransferase-like VI35_03345 ce6d04af24d500caa7c4db36eea49c85 545 SUPERFAMILY SSF52317 289 541 7.3E-88 T 17-10-2018 IPR029062 Class I glutamine amidotransferase-like VI35_03345 ce6d04af24d500caa7c4db36eea49c85 545 TIGRFAM TIGR00337 PyrG: CTP synthase 2 535 2.0E-259 T 17-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 VI35_03345 ce6d04af24d500caa7c4db36eea49c85 545 Pfam PF00117 Glutamine amidotransferase class-I 301 535 8.8E-62 T 17-10-2018 IPR017926 Glutamine amidotransferase VI35_03345 ce6d04af24d500caa7c4db36eea49c85 545 SUPERFAMILY SSF52540 3 269 1.2E-120 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_03345 ce6d04af24d500caa7c4db36eea49c85 545 Gene3D G3DSA:3.40.50.300 1 285 5.7E-134 T 17-10-2018 VI35_16645 5f164f7d1bbf7afa940fe4fd51e45274 166 TIGRFAM TIGR01955 RfaH: transcription elongation factor/antiterminator RfaH 4 162 2.3E-51 T 17-10-2018 IPR010215 Transcription antitermination protein RfaH GO:0006355 VI35_16645 5f164f7d1bbf7afa940fe4fd51e45274 166 Pfam PF02357 Transcription termination factor nusG 2 96 1.9E-19 T 17-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 VI35_16645 5f164f7d1bbf7afa940fe4fd51e45274 166 SUPERFAMILY SSF82679 1 102 2.09E-27 T 17-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 VI35_16645 5f164f7d1bbf7afa940fe4fd51e45274 166 Gene3D G3DSA:3.30.70.940 1 165 1.5E-50 T 17-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 VI35_16645 5f164f7d1bbf7afa940fe4fd51e45274 166 Hamap MF_00951 Transcription antitermination protein RfaH [rfaH]. 1 165 47.111 T 17-10-2018 IPR010215 Transcription antitermination protein RfaH GO:0006355 VI35_16645 5f164f7d1bbf7afa940fe4fd51e45274 166 SMART SM00738 1 100 7.4E-19 T 17-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 VI35_07800 636f182fda3aaf360a9ee24bf87fe3ab 193 SMART SM00530 1 52 0.0084 T 17-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VI35_07800 636f182fda3aaf360a9ee24bf87fe3ab 193 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 1 49 1.8E-9 T 17-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VI35_07800 636f182fda3aaf360a9ee24bf87fe3ab 193 Gene3D G3DSA:1.10.260.40 1 60 1.4E-10 T 17-10-2018 VI35_07800 636f182fda3aaf360a9ee24bf87fe3ab 193 SUPERFAMILY SSF47413 1 58 2.02E-10 T 17-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VI35_07800 636f182fda3aaf360a9ee24bf87fe3ab 193 SUPERFAMILY SSF51306 99 188 2.22E-5 T 17-10-2018 IPR036286 LexA/Signal peptidase-like superfamily VI35_10365 33946332a93991a59bf6609cd0133b7a 132 Pfam PF13411 MerR HTH family regulatory protein 11 76 4.1E-17 T 17-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VI35_10365 33946332a93991a59bf6609cd0133b7a 132 SUPERFAMILY SSF46955 11 125 2.05E-26 T 17-10-2018 IPR009061 Putative DNA-binding domain superfamily VI35_10365 33946332a93991a59bf6609cd0133b7a 132 Gene3D G3DSA:1.10.1660.10 2 130 7.8E-28 T 17-10-2018 VI35_10365 33946332a93991a59bf6609cd0133b7a 132 SMART SM00422 11 78 2.0E-19 T 17-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VI35_01175 353113a78af689fb27f4e85396f6f0ee 426 Gene3D G3DSA:1.10.8.60 287 363 3.9E-15 T 17-10-2018 VI35_01175 353113a78af689fb27f4e85396f6f0ee 426 SUPERFAMILY SSF52172 2 176 7.26E-43 T 17-10-2018 IPR011006 CheY-like superfamily VI35_01175 353113a78af689fb27f4e85396f6f0ee 426 Pfam PF00158 Sigma-54 interaction domain 134 281 4.7E-37 T 17-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VI35_01175 353113a78af689fb27f4e85396f6f0ee 426 SUPERFAMILY SSF52540 135 359 7.3E-46 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_01175 353113a78af689fb27f4e85396f6f0ee 426 SUPERFAMILY SSF46689 329 417 5.38E-8 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_01175 353113a78af689fb27f4e85396f6f0ee 426 Gene3D G3DSA:1.10.10.60 368 420 3.1E-12 T 17-10-2018 VI35_01175 353113a78af689fb27f4e85396f6f0ee 426 SMART SM00382 152 278 6.8E-7 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_01175 353113a78af689fb27f4e85396f6f0ee 426 Gene3D G3DSA:3.40.50.2300 1 133 4.3E-40 T 17-10-2018 VI35_01175 353113a78af689fb27f4e85396f6f0ee 426 SMART SM00448 2 113 3.4E-36 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_01175 353113a78af689fb27f4e85396f6f0ee 426 Pfam PF00072 Response regulator receiver domain 4 113 1.5E-29 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_01175 353113a78af689fb27f4e85396f6f0ee 426 Gene3D G3DSA:3.40.50.300 134 286 1.1E-42 T 17-10-2018 VI35_04540 953995a179e07996361e9706c04a8353 265 Pfam PF06738 Putative threonine/serine exporter 20 257 2.3E-66 T 17-10-2018 IPR010619 Putative threonine/serine exporter VI35_10605 0ccfb4866277e3893eca2b109472e34f 321 SUPERFAMILY SSF103481 222 308 3.79E-8 T 17-10-2018 VI35_10605 0ccfb4866277e3893eca2b109472e34f 321 SUPERFAMILY SSF103481 39 140 1.31E-5 T 17-10-2018 VI35_10605 0ccfb4866277e3893eca2b109472e34f 321 Pfam PF00892 EamA-like transporter family 3 116 1.0E-11 T 17-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VI35_10470 2ec7968685bbca566cc683517c1551a5 350 Gene3D G3DSA:1.10.3470.10 17 349 6.8E-96 T 17-10-2018 IPR037294 ABC transporter, BtuC-like VI35_10470 2ec7968685bbca566cc683517c1551a5 350 Pfam PF01032 FecCD transport family 32 343 7.6E-86 T 17-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 VI35_10470 2ec7968685bbca566cc683517c1551a5 350 SUPERFAMILY SSF81345 15 343 1.18E-80 T 17-10-2018 IPR037294 ABC transporter, BtuC-like VI35_13995 90336e6f1b5373c0c3c125cefaf3ad18 123 SUPERFAMILY SSF52980 9 120 1.18E-15 T 17-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 VI35_13995 90336e6f1b5373c0c3c125cefaf3ad18 123 Gene3D G3DSA:3.40.960.10 22 123 3.9E-30 T 17-10-2018 VI35_13995 90336e6f1b5373c0c3c125cefaf3ad18 123 Pfam PF04480 Protein of unknown function (DUF559) 17 118 8.6E-27 T 17-10-2018 IPR007569 Protein of unknown function DUF559 VI35_18620 b893801c26f22971473885a6c779b2f4 174 Pfam PF08534 Redoxin 50 154 1.4E-11 T 17-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 VI35_18620 b893801c26f22971473885a6c779b2f4 174 SUPERFAMILY SSF52833 12 163 4.77E-26 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_18620 b893801c26f22971473885a6c779b2f4 174 Gene3D G3DSA:3.40.30.10 37 166 7.8E-21 T 17-10-2018 VI35_10385 e41b407577264d1d79c18f883f937302 423 Gene3D G3DSA:2.40.160.60 25 423 3.5E-138 T 17-10-2018 VI35_10385 e41b407577264d1d79c18f883f937302 423 SUPERFAMILY SSF56935 25 423 5.04E-99 T 17-10-2018 VI35_10385 e41b407577264d1d79c18f883f937302 423 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 16 423 1.4E-131 T 17-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) VI35_17440 ff881b0f5a38e8a74e7df6d34726cc30 534 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 74 451 3.7E-84 T 17-10-2018 IPR000914 Solute-binding protein family 5 domain VI35_17440 ff881b0f5a38e8a74e7df6d34726cc30 534 PIRSF PIRSF002741 5 534 5.4E-106 T 17-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 VI35_17440 ff881b0f5a38e8a74e7df6d34726cc30 534 Gene3D G3DSA:3.10.105.10 288 503 7.4E-179 T 17-10-2018 VI35_17440 ff881b0f5a38e8a74e7df6d34726cc30 534 Gene3D G3DSA:3.90.76.10 63 186 7.4E-179 T 17-10-2018 VI35_17440 ff881b0f5a38e8a74e7df6d34726cc30 534 Gene3D G3DSA:3.40.190.10 37 515 7.4E-179 T 17-10-2018 VI35_17440 ff881b0f5a38e8a74e7df6d34726cc30 534 SUPERFAMILY SSF53850 28 522 1.27E-138 T 17-10-2018 VI35_08440 4c4086aaaa0db1d0f305372f2c4371df 444 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 5 442 9.1E-166 T 17-10-2018 IPR010263 Type VI secretion protein, VC_A0114 VI35_08440 4c4086aaaa0db1d0f305372f2c4371df 444 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 19 441 8.2E-160 T 17-10-2018 IPR010263 Type VI secretion protein, VC_A0114 VI35_01590 8e519cf09fcb2e21d5c682ec3c030dc4 684 Gene3D G3DSA:1.10.10.1020 4 129 8.9E-19 T 17-10-2018 VI35_01590 8e519cf09fcb2e21d5c682ec3c030dc4 684 Pfam PF13604 AAA domain 233 397 1.1E-30 T 17-10-2018 VI35_01590 8e519cf09fcb2e21d5c682ec3c030dc4 684 Gene3D G3DSA:3.40.50.300 204 435 4.6E-68 T 17-10-2018 VI35_01590 8e519cf09fcb2e21d5c682ec3c030dc4 684 Pfam PF13538 UvrD-like helicase C-terminal domain 611 655 1.1E-15 T 17-10-2018 IPR027785 UvrD-like helicase C-terminal domain VI35_01590 8e519cf09fcb2e21d5c682ec3c030dc4 684 SUPERFAMILY SSF52540 17 440 3.97E-42 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_01590 8e519cf09fcb2e21d5c682ec3c030dc4 684 SUPERFAMILY SSF52540 363 682 6.29E-61 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_01590 8e519cf09fcb2e21d5c682ec3c030dc4 684 Gene3D G3DSA:3.40.50.300 556 671 8.7E-27 T 17-10-2018 VI35_01590 8e519cf09fcb2e21d5c682ec3c030dc4 684 Gene3D G3DSA:3.40.50.300 445 555 3.4E-26 T 17-10-2018 VI35_01590 8e519cf09fcb2e21d5c682ec3c030dc4 684 Hamap MF_01487 RecBCD enzyme subunit RecD [recD]. 19 680 49.346 T 17-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 VI35_01590 8e519cf09fcb2e21d5c682ec3c030dc4 684 TIGRFAM TIGR01447 recD: exodeoxyribonuclease V, alpha subunit 11 682 3.5E-185 T 17-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 VI35_13115 78883d948a2440d45b1d7f0c65898a05 378 SUPERFAMILY SSF52317 154 377 1.33E-60 T 17-10-2018 IPR029062 Class I glutamine amidotransferase-like VI35_13115 78883d948a2440d45b1d7f0c65898a05 378 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 5 132 7.7E-53 T 17-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VI35_13115 78883d948a2440d45b1d7f0c65898a05 378 PRINTS PR00096 Glutamine amidotransferase superfamily signature 263 274 3.1E-11 T 17-10-2018 VI35_13115 78883d948a2440d45b1d7f0c65898a05 378 PRINTS PR00096 Glutamine amidotransferase superfamily signature 348 361 3.1E-11 T 17-10-2018 VI35_13115 78883d948a2440d45b1d7f0c65898a05 378 PRINTS PR00096 Glutamine amidotransferase superfamily signature 235 244 3.1E-11 T 17-10-2018 VI35_13115 78883d948a2440d45b1d7f0c65898a05 378 SMART SM01097 3 133 1.6E-92 T 17-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VI35_13115 78883d948a2440d45b1d7f0c65898a05 378 Pfam PF00117 Glutamine amidotransferase class-I 196 371 1.2E-47 T 17-10-2018 IPR017926 Glutamine amidotransferase VI35_13115 78883d948a2440d45b1d7f0c65898a05 378 Gene3D G3DSA:3.50.30.20 2 151 2.9E-61 T 17-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VI35_13115 78883d948a2440d45b1d7f0c65898a05 378 SUPERFAMILY SSF52021 4 140 1.15E-57 T 17-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VI35_13115 78883d948a2440d45b1d7f0c65898a05 378 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 280 297 7.6E-41 T 17-10-2018 VI35_13115 78883d948a2440d45b1d7f0c65898a05 378 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 232 246 7.6E-41 T 17-10-2018 VI35_13115 78883d948a2440d45b1d7f0c65898a05 378 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 305 316 7.6E-41 T 17-10-2018 VI35_13115 78883d948a2440d45b1d7f0c65898a05 378 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 263 279 7.6E-41 T 17-10-2018 VI35_13115 78883d948a2440d45b1d7f0c65898a05 378 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 193 207 7.6E-41 T 17-10-2018 VI35_13115 78883d948a2440d45b1d7f0c65898a05 378 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 3 377 48.674 T 17-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VI35_13115 78883d948a2440d45b1d7f0c65898a05 378 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 5 374 4.8E-150 T 17-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VI35_13115 78883d948a2440d45b1d7f0c65898a05 378 PRINTS PR00097 Anthranilate synthase component II signature 235 244 1.1E-5 T 17-10-2018 VI35_13115 78883d948a2440d45b1d7f0c65898a05 378 PRINTS PR00097 Anthranilate synthase component II signature 348 361 1.1E-5 T 17-10-2018 VI35_13115 78883d948a2440d45b1d7f0c65898a05 378 PRINTS PR00097 Anthranilate synthase component II signature 263 274 1.1E-5 T 17-10-2018 VI35_13115 78883d948a2440d45b1d7f0c65898a05 378 Gene3D G3DSA:3.40.50.880 152 378 2.8E-74 T 17-10-2018 IPR029062 Class I glutamine amidotransferase-like VI35_03240 596ac9d51c6fae6e7cf9d3ed8b507a2b 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 3.3E-6 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_03240 596ac9d51c6fae6e7cf9d3ed8b507a2b 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 3.3E-6 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_03240 596ac9d51c6fae6e7cf9d3ed8b507a2b 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 3.3E-6 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_03240 596ac9d51c6fae6e7cf9d3ed8b507a2b 293 SUPERFAMILY SSF53850 90 292 5.89E-34 T 17-10-2018 VI35_03240 596ac9d51c6fae6e7cf9d3ed8b507a2b 293 Gene3D G3DSA:3.40.190.290 94 279 2.8E-32 T 17-10-2018 VI35_03240 596ac9d51c6fae6e7cf9d3ed8b507a2b 293 Pfam PF03466 LysR substrate binding domain 89 290 3.7E-27 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_03240 596ac9d51c6fae6e7cf9d3ed8b507a2b 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 4.2E-18 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_03240 596ac9d51c6fae6e7cf9d3ed8b507a2b 293 Gene3D G3DSA:1.10.10.10 3 90 3.7E-20 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_03240 596ac9d51c6fae6e7cf9d3ed8b507a2b 293 SUPERFAMILY SSF46785 4 89 3.31E-18 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_01055 1f1f1323a34b363645aacdfb6098c543 172 Pfam PF01928 CYTH domain 3 163 3.1E-13 T 17-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 VI35_01055 1f1f1323a34b363645aacdfb6098c543 172 SUPERFAMILY SSF55154 3 167 1.06E-35 T 17-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 VI35_01055 1f1f1323a34b363645aacdfb6098c543 172 ProDom PD009560 CYCLASE ADENYLATE CYCLASE ADENYLYL CYAB LYASE CLASS CYAB-TYPE THERMOPHILIC MJ0240 34 124 0.004 T 17-10-2018 VI35_01055 1f1f1323a34b363645aacdfb6098c543 172 Gene3D G3DSA:2.40.320.10 1 171 2.5E-33 T 17-10-2018 VI35_01055 1f1f1323a34b363645aacdfb6098c543 172 SMART SM01118 2 169 2.2E-11 T 17-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 VI35_00880 01f849da96b034e97e14faac76697c3c 322 Gene3D G3DSA:1.10.287.470 174 201 2.3E-23 T 17-10-2018 VI35_00880 01f849da96b034e97e14faac76697c3c 322 SUPERFAMILY SSF111369 174 320 1.07E-9 T 17-10-2018 VI35_00880 01f849da96b034e97e14faac76697c3c 322 SUPERFAMILY SSF111369 37 118 3.27E-9 T 17-10-2018 VI35_00880 01f849da96b034e97e14faac76697c3c 322 Gene3D G3DSA:2.40.50.100 202 236 2.3E-23 T 17-10-2018 VI35_00880 01f849da96b034e97e14faac76697c3c 322 Gene3D G3DSA:1.10.287.470 72 89 1.2E-13 T 17-10-2018 VI35_00880 01f849da96b034e97e14faac76697c3c 322 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 40 314 5.0E-19 T 17-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VI35_00880 01f849da96b034e97e14faac76697c3c 322 Gene3D G3DSA:2.40.50.100 38 71 1.2E-13 T 17-10-2018 VI35_00880 01f849da96b034e97e14faac76697c3c 322 Gene3D G3DSA:2.40.30.170 237 317 2.3E-23 T 17-10-2018 VI35_00880 01f849da96b034e97e14faac76697c3c 322 Gene3D G3DSA:1.10.287.470 104 168 8.0E-10 T 17-10-2018 VI35_02295 6c232836a8c4b54fb901784892eb773a 135 ProSitePatterns PS00893 Nudix box signature. 42 63 - T 17-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 VI35_02295 6c232836a8c4b54fb901784892eb773a 135 PRINTS PR01401 Mutator MutT protein signature 81 94 6.1E-6 T 17-10-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 VI35_02295 6c232836a8c4b54fb901784892eb773a 135 PRINTS PR01401 Mutator MutT protein signature 6 27 6.1E-6 T 17-10-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 VI35_02295 6c232836a8c4b54fb901784892eb773a 135 Gene3D G3DSA:3.90.79.10 5 133 4.2E-37 T 17-10-2018 VI35_02295 6c232836a8c4b54fb901784892eb773a 135 SUPERFAMILY SSF55811 5 130 1.9E-35 T 17-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VI35_02295 6c232836a8c4b54fb901784892eb773a 135 Pfam PF00293 NUDIX domain 11 128 3.0E-20 T 17-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 VI35_02295 6c232836a8c4b54fb901784892eb773a 135 PRINTS PR00502 NUDIX hydrolase family signature 51 66 2.3E-6 T 17-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 VI35_02295 6c232836a8c4b54fb901784892eb773a 135 PRINTS PR00502 NUDIX hydrolase family signature 37 51 2.3E-6 T 17-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 VI35_02295 6c232836a8c4b54fb901784892eb773a 135 TIGRFAM TIGR00586 mutt: mutator mutT protein 5 131 1.4E-40 T 17-10-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 VI35_01250 f39d5cd78799aebbbc8ae7008d6761fe 331 Gene3D G3DSA:3.30.465.10 59 207 3.6E-55 T 17-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 VI35_01250 f39d5cd78799aebbbc8ae7008d6761fe 331 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 331 86.075 T 17-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VI35_01250 f39d5cd78799aebbbc8ae7008d6761fe 331 Pfam PF01565 FAD binding domain 31 139 2.5E-19 T 17-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 VI35_01250 f39d5cd78799aebbbc8ae7008d6761fe 331 SUPERFAMILY SSF56194 191 328 3.92E-50 T 17-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VI35_01250 f39d5cd78799aebbbc8ae7008d6761fe 331 Gene3D G3DSA:3.30.43.10 1 58 7.2E-13 T 17-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 VI35_01250 f39d5cd78799aebbbc8ae7008d6761fe 331 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 195 317 4.3E-33 T 17-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VI35_01250 f39d5cd78799aebbbc8ae7008d6761fe 331 SUPERFAMILY SSF56176 3 184 2.73E-42 T 17-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 VI35_01250 f39d5cd78799aebbbc8ae7008d6761fe 331 Gene3D G3DSA:3.90.78.10 208 330 4.9E-44 T 17-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VI35_01250 f39d5cd78799aebbbc8ae7008d6761fe 331 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 22 319 4.7E-87 T 17-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VI35_16420 02a9765f401689a4848c4d33722c12e4 263 Gene3D G3DSA:3.40.50.300 8 263 8.0E-65 T 17-10-2018 VI35_16420 02a9765f401689a4848c4d33722c12e4 263 Pfam PF00005 ABC transporter 24 177 7.1E-24 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_16420 02a9765f401689a4848c4d33722c12e4 263 SUPERFAMILY SSF52540 7 237 3.43E-53 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_16420 02a9765f401689a4848c4d33722c12e4 263 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_16420 02a9765f401689a4848c4d33722c12e4 263 SMART SM00382 33 225 3.1E-12 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_18835 fbb6888d6bfe69a189546378a62aaaf4 459 SUPERFAMILY SSF52540 73 358 1.01E-70 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_18835 fbb6888d6bfe69a189546378a62aaaf4 459 SMART SM00490 256 337 1.4E-27 T 17-10-2018 IPR001650 Helicase, C-terminal VI35_18835 fbb6888d6bfe69a189546378a62aaaf4 459 SMART SM00487 23 220 5.8E-52 T 17-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VI35_18835 fbb6888d6bfe69a189546378a62aaaf4 459 Gene3D G3DSA:3.30.70.330 390 458 7.0E-22 T 17-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily VI35_18835 fbb6888d6bfe69a189546378a62aaaf4 459 Gene3D G3DSA:3.40.50.300 4 210 6.3E-71 T 17-10-2018 VI35_18835 fbb6888d6bfe69a189546378a62aaaf4 459 Gene3D G3DSA:3.40.50.300 214 389 1.4E-46 T 17-10-2018 VI35_18835 fbb6888d6bfe69a189546378a62aaaf4 459 Pfam PF00271 Helicase conserved C-terminal domain 231 337 1.7E-26 T 17-10-2018 IPR001650 Helicase, C-terminal VI35_18835 fbb6888d6bfe69a189546378a62aaaf4 459 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 152 160 - T 17-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VI35_18835 fbb6888d6bfe69a189546378a62aaaf4 459 Pfam PF03880 DbpA RNA binding domain 386 456 2.3E-23 T 17-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain VI35_18835 fbb6888d6bfe69a189546378a62aaaf4 459 Pfam PF00270 DEAD/DEAH box helicase 28 192 1.5E-44 T 17-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VI35_19715 831704360113222cb390f792ce051fbd 333 Pfam PF13280 WYL domain 159 324 9.7E-13 T 17-10-2018 IPR026881 WYL domain VI35_01080 cc86a22e921a399a8545778c8c395c04 386 Gene3D G3DSA:1.20.1090.10 185 386 1.4E-42 T 17-10-2018 VI35_01080 cc86a22e921a399a8545778c8c395c04 386 SUPERFAMILY SSF56796 1 386 2.49E-102 T 17-10-2018 VI35_01080 cc86a22e921a399a8545778c8c395c04 386 Pfam PF00465 Iron-containing alcohol dehydrogenase 9 358 9.5E-87 T 17-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 VI35_01080 cc86a22e921a399a8545778c8c395c04 386 Gene3D G3DSA:3.40.50.1970 1 184 1.7E-47 T 17-10-2018 VI35_01080 cc86a22e921a399a8545778c8c395c04 386 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 264 284 - T 17-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 VI35_01080 cc86a22e921a399a8545778c8c395c04 386 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 173 201 - T 17-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 VI35_15160 f1cf05f5ed8c1c5b3e7ac51b501d6b34 203 SUPERFAMILY SSF54534 6 202 1.47E-55 T 17-10-2018 VI35_15160 f1cf05f5ed8c1c5b3e7ac51b501d6b34 203 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 115 200 4.5E-24 T 17-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain VI35_15160 f1cf05f5ed8c1c5b3e7ac51b501d6b34 203 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 5 106 2.1E-25 T 17-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 VI35_15160 f1cf05f5ed8c1c5b3e7ac51b501d6b34 203 Gene3D G3DSA:1.10.287.460 3 65 5.6E-17 T 17-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 VI35_15160 f1cf05f5ed8c1c5b3e7ac51b501d6b34 203 Gene3D G3DSA:3.10.50.40 66 203 1.4E-49 T 17-10-2018 VI35_04705 b91b9088528b1ac246ea5501ca384bda 648 Pfam PF00501 AMP-binding enzyme 83 521 3.2E-93 T 17-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 VI35_04705 b91b9088528b1ac246ea5501ca384bda 648 Gene3D G3DSA:3.30.300.30 517 648 2.9E-31 T 17-10-2018 VI35_04705 b91b9088528b1ac246ea5501ca384bda 648 ProSitePatterns PS00455 Putative AMP-binding domain signature. 260 271 - T 17-10-2018 IPR020845 AMP-binding, conserved site VI35_04705 b91b9088528b1ac246ea5501ca384bda 648 Pfam PF13193 AMP-binding enzyme C-terminal domain 530 608 3.8E-26 T 17-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain VI35_04705 b91b9088528b1ac246ea5501ca384bda 648 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 2 644 53.437 T 17-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 VI35_04705 b91b9088528b1ac246ea5501ca384bda 648 SUPERFAMILY SSF56801 8 642 4.19E-184 T 17-10-2018 VI35_04705 b91b9088528b1ac246ea5501ca384bda 648 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 24 81 1.5E-19 T 17-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 VI35_04705 b91b9088528b1ac246ea5501ca384bda 648 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 21 642 0.0 T 17-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 VI35_04705 b91b9088528b1ac246ea5501ca384bda 648 Gene3D G3DSA:3.40.50.12780 51 514 1.5E-105 T 17-10-2018 VI35_12055 997fd4443d6260afcae2cf1d884eb231 230 Hamap MF_00238 Cytidylate kinase [cmk]. 6 224 35.102 T 17-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 VI35_12055 997fd4443d6260afcae2cf1d884eb231 230 Pfam PF02224 Cytidylate kinase 9 221 4.3E-82 T 17-10-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 VI35_12055 997fd4443d6260afcae2cf1d884eb231 230 TIGRFAM TIGR00017 cmk: cytidylate kinase 5 219 3.3E-90 T 17-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 VI35_12055 997fd4443d6260afcae2cf1d884eb231 230 Gene3D G3DSA:3.40.50.300 1 228 1.0E-84 T 17-10-2018 VI35_12055 997fd4443d6260afcae2cf1d884eb231 230 SUPERFAMILY SSF52540 6 222 2.22E-48 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_04730 493657608c8d73aff754c4fb339cad09 417 Pfam PF00464 Serine hydroxymethyltransferase 10 386 4.2E-184 T 17-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 VI35_04730 493657608c8d73aff754c4fb339cad09 417 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 221 237 - T 17-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 VI35_04730 493657608c8d73aff754c4fb339cad09 417 Gene3D G3DSA:3.90.1150.10 11 397 7.9E-188 T 17-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VI35_04730 493657608c8d73aff754c4fb339cad09 417 Gene3D G3DSA:3.40.640.10 37 289 7.9E-188 T 17-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VI35_04730 493657608c8d73aff754c4fb339cad09 417 SUPERFAMILY SSF53383 6 416 8.11E-185 T 17-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VI35_04730 493657608c8d73aff754c4fb339cad09 417 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 417 53.991 T 17-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 VI35_04730 493657608c8d73aff754c4fb339cad09 417 PIRSF PIRSF000412 1 417 8.7E-172 T 17-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 VI35_09500 6d1b532a90988084724d886e882d4bdd 583 Gene3D G3DSA:1.10.3720.10 319 576 1.1E-33 T 17-10-2018 IPR035906 MetI-like superfamily VI35_09500 6d1b532a90988084724d886e882d4bdd 583 Gene3D G3DSA:1.10.3720.10 38 303 1.5E-52 T 17-10-2018 IPR035906 MetI-like superfamily VI35_09500 6d1b532a90988084724d886e882d4bdd 583 TIGRFAM TIGR03262 PhnU2: putative 2-aminoethylphosphonate ABC transporter, permease protein 41 582 4.5E-223 T 17-10-2018 IPR017664 2-aminoethylphosphonate ABC transport system, permease protein, putative VI35_09500 6d1b532a90988084724d886e882d4bdd 583 SUPERFAMILY SSF161098 324 564 8.18E-34 T 17-10-2018 IPR035906 MetI-like superfamily VI35_09500 6d1b532a90988084724d886e882d4bdd 583 SUPERFAMILY SSF161098 41 294 1.08E-48 T 17-10-2018 IPR035906 MetI-like superfamily VI35_09500 6d1b532a90988084724d886e882d4bdd 583 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 401 572 3.3E-10 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_09500 6d1b532a90988084724d886e882d4bdd 583 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 128 291 5.3E-11 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_05955 f0132e3dd8589aeb7bc0f3b93ee77268 499 TIGRFAM TIGR03499 FlhF: flagellar biosynthesis protein FlhF 165 368 2.6E-71 T 17-10-2018 IPR020006 Flagellar biosynthesis protein FlhF GO:0003924|GO:0044781 VI35_05955 f0132e3dd8589aeb7bc0f3b93ee77268 499 Gene3D G3DSA:3.40.50.300 275 461 1.5E-60 T 17-10-2018 VI35_05955 f0132e3dd8589aeb7bc0f3b93ee77268 499 SMART SM00382 279 420 5.7E-9 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_05955 f0132e3dd8589aeb7bc0f3b93ee77268 499 Pfam PF00448 SRP54-type protein, GTPase domain 283 470 1.2E-39 T 17-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VI35_05955 f0132e3dd8589aeb7bc0f3b93ee77268 499 Gene3D G3DSA:1.20.120.1380 255 463 1.5E-60 T 17-10-2018 VI35_05955 f0132e3dd8589aeb7bc0f3b93ee77268 499 SUPERFAMILY SSF52540 276 469 6.12E-35 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_05955 f0132e3dd8589aeb7bc0f3b93ee77268 499 SMART SM00962 280 473 9.6E-68 T 17-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VI35_10425 30af4cf465649555e790aa8c96f420b0 316 PIRSF PIRSF002849 1 316 5.9E-118 T 17-10-2018 VI35_10425 30af4cf465649555e790aa8c96f420b0 316 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 36 166 5.3E-61 T 17-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 VI35_10425 30af4cf465649555e790aa8c96f420b0 316 Gene3D G3DSA:1.10.8.300 197 313 1.4E-32 T 17-10-2018 VI35_10425 30af4cf465649555e790aa8c96f420b0 316 Gene3D G3DSA:3.40.50.300 17 183 1.7E-43 T 17-10-2018 VI35_10425 30af4cf465649555e790aa8c96f420b0 316 SUPERFAMILY SSF52540 7 288 6.56E-40 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_08535 3d93ab4e549dd15b10a00f31a7b6d4c2 176 Pfam PF01750 Hydrogenase maturation protease 20 145 9.1E-33 T 17-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 VI35_08535 3d93ab4e549dd15b10a00f31a7b6d4c2 176 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 4 147 2.8E-47 T 17-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 VI35_08535 3d93ab4e549dd15b10a00f31a7b6d4c2 176 TIGRFAM TIGR00140 hupD: hydrogenase expression/formation protein 4 152 8.8E-47 T 17-10-2018 IPR004419 Peptidase A31, hydrogenase expression/formation protein GO:0016485|GO:0046872 VI35_08535 3d93ab4e549dd15b10a00f31a7b6d4c2 176 PRINTS PR00446 Hydrogen uptake protein signature 3 15 2.6E-22 T 17-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 VI35_08535 3d93ab4e549dd15b10a00f31a7b6d4c2 176 PRINTS PR00446 Hydrogen uptake protein signature 35 52 2.6E-22 T 17-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 VI35_08535 3d93ab4e549dd15b10a00f31a7b6d4c2 176 PRINTS PR00446 Hydrogen uptake protein signature 67 83 2.6E-22 T 17-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 VI35_08535 3d93ab4e549dd15b10a00f31a7b6d4c2 176 PRINTS PR00446 Hydrogen uptake protein signature 15 26 2.6E-22 T 17-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 VI35_08535 3d93ab4e549dd15b10a00f31a7b6d4c2 176 PRINTS PR00446 Hydrogen uptake protein signature 56 66 2.6E-22 T 17-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 VI35_08535 3d93ab4e549dd15b10a00f31a7b6d4c2 176 SUPERFAMILY SSF53163 1 154 7.59E-45 T 17-10-2018 IPR023430 Peptidase HybD-like domain superfamily VI35_08535 3d93ab4e549dd15b10a00f31a7b6d4c2 176 Gene3D G3DSA:3.40.50.1450 1 156 8.6E-47 T 17-10-2018 IPR023430 Peptidase HybD-like domain superfamily VI35_14755 da63c0c7ca9de51ab5a401c8dc38b714 543 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 15 295 1.6E-71 T 17-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 VI35_14755 da63c0c7ca9de51ab5a401c8dc38b714 543 SUPERFAMILY SSF51735 409 540 2.58E-21 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_14755 da63c0c7ca9de51ab5a401c8dc38b714 543 Pfam PF02254 TrkA-N domain 413 526 3.1E-13 T 17-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 VI35_14755 da63c0c7ca9de51ab5a401c8dc38b714 543 Pfam PF00999 Sodium/hydrogen exchanger family 14 385 9.1E-73 T 17-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 VI35_14755 da63c0c7ca9de51ab5a401c8dc38b714 543 Gene3D G3DSA:3.40.50.720 408 543 4.2E-23 T 17-10-2018 VI35_14755 da63c0c7ca9de51ab5a401c8dc38b714 543 Gene3D G3DSA:1.20.1530.20 7 398 6.8E-75 T 17-10-2018 IPR038770 Sodium/solute symporter superfamily VI35_03165 41110ff1d4b0bee591d2eed5bed566d8 416 SUPERFAMILY SSF58104 106 415 8.11E-74 T 17-10-2018 VI35_03165 41110ff1d4b0bee591d2eed5bed566d8 416 SMART SM00304 86 138 0.0012 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_03165 41110ff1d4b0bee591d2eed5bed566d8 416 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 198 381 2.1E-43 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_03165 41110ff1d4b0bee591d2eed5bed566d8 416 Gene3D G3DSA:1.10.287.950 86 416 2.6E-71 T 17-10-2018 VI35_03165 41110ff1d4b0bee591d2eed5bed566d8 416 SMART SM00283 153 414 3.3E-68 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_14700 c5ba6680a01f0c5d67218839ec7fb921 322 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 31 49 - T 17-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 VI35_14700 c5ba6680a01f0c5d67218839ec7fb921 322 TIGRFAM TIGR01136 cysKM: cysteine synthase 9 311 2.7E-135 T 17-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 VI35_14700 c5ba6680a01f0c5d67218839ec7fb921 322 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 10 299 2.0E-69 T 17-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme VI35_14700 c5ba6680a01f0c5d67218839ec7fb921 322 Gene3D G3DSA:3.40.50.1100 43 145 8.6E-125 T 17-10-2018 VI35_14700 c5ba6680a01f0c5d67218839ec7fb921 322 TIGRFAM TIGR01139 cysK: cysteine synthase A 9 311 5.1E-142 T 17-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 VI35_14700 c5ba6680a01f0c5d67218839ec7fb921 322 Gene3D G3DSA:3.40.50.1100 12 306 8.6E-125 T 17-10-2018 VI35_14700 c5ba6680a01f0c5d67218839ec7fb921 322 SUPERFAMILY SSF53686 4 308 3.27E-95 T 17-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme VI35_02040 d8196cbb6ddb968d835f5b2e0e85cc15 230 PRINTS PR01003 Flagellar assembly protein FliH signature 181 197 6.6E-7 T 17-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 VI35_02040 d8196cbb6ddb968d835f5b2e0e85cc15 230 PRINTS PR01003 Flagellar assembly protein FliH signature 75 93 6.6E-7 T 17-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 VI35_02040 d8196cbb6ddb968d835f5b2e0e85cc15 230 PRINTS PR01003 Flagellar assembly protein FliH signature 52 74 6.6E-7 T 17-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 VI35_02040 d8196cbb6ddb968d835f5b2e0e85cc15 230 PRINTS PR01003 Flagellar assembly protein FliH signature 114 131 6.6E-7 T 17-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 VI35_02040 d8196cbb6ddb968d835f5b2e0e85cc15 230 Pfam PF02108 Flagellar assembly protein FliH 98 215 4.3E-16 T 17-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE VI35_12675 2db59051c382b0f23df00311b85e7468 554 PIRSF PIRSF001589 1 369 3.9E-108 T 17-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 VI35_12675 2db59051c382b0f23df00311b85e7468 554 PIRSF PIRSF001589 363 506 1.3E-29 T 17-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 VI35_12675 2db59051c382b0f23df00311b85e7468 554 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 373 6.1E-119 T 17-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 VI35_12675 2db59051c382b0f23df00311b85e7468 554 Pfam PF13537 Glutamine amidotransferase domain 48 165 9.0E-41 T 17-10-2018 IPR017932 Glutamine amidotransferase type 2 domain VI35_12675 2db59051c382b0f23df00311b85e7468 554 SUPERFAMILY SSF56235 1 196 4.46E-57 T 17-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VI35_12675 2db59051c382b0f23df00311b85e7468 554 SUPERFAMILY SSF52402 211 478 1.13E-74 T 17-10-2018 VI35_12675 2db59051c382b0f23df00311b85e7468 554 Pfam PF00733 Asparagine synthase 211 367 6.0E-58 T 17-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 VI35_12675 2db59051c382b0f23df00311b85e7468 554 Gene3D G3DSA:3.40.50.620 194 514 1.3E-113 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_12675 2db59051c382b0f23df00311b85e7468 554 Gene3D G3DSA:3.60.20.10 2 193 1.2E-71 T 17-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VI35_02075 cedb816150b22732f03effdbfbeb878f 141 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 6 139 1.0E-37 T 17-10-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 VI35_02075 cedb816150b22732f03effdbfbeb878f 141 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 93 137 9.7E-12 T 17-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain VI35_02075 cedb816150b22732f03effdbfbeb878f 141 Pfam PF00460 Flagella basal body rod protein 9 32 7.0E-7 T 17-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 VI35_18090 5de02c2a5e85d25b56b99d9270f00979 371 Pfam PF13556 PucR C-terminal helix-turn-helix domain 311 367 6.4E-20 T 17-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain VI35_18090 5de02c2a5e85d25b56b99d9270f00979 371 Pfam PF05651 Putative sugar diacid recognition 3 136 1.6E-51 T 17-10-2018 IPR008599 Putative sugar diacid recognition VI35_18090 5de02c2a5e85d25b56b99d9270f00979 371 Gene3D G3DSA:1.10.10.2840 244 371 5.2E-23 T 17-10-2018 VI35_13480 fde8e002a4afe68701d7650660afd5f5 439 SMART SM01091 348 428 2.1E-30 T 17-10-2018 IPR005170 Transporter-associated domain VI35_13480 fde8e002a4afe68701d7650660afd5f5 439 SUPERFAMILY SSF56176 346 434 6.27E-25 T 17-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 VI35_13480 fde8e002a4afe68701d7650660afd5f5 439 Gene3D G3DSA:3.30.465.10 349 428 7.2E-31 T 17-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 VI35_13480 fde8e002a4afe68701d7650660afd5f5 439 Pfam PF01595 Domain of unknown function DUF21 9 199 9.6E-40 T 17-10-2018 IPR002550 CNNM, transmembrane domain VI35_13480 fde8e002a4afe68701d7650660afd5f5 439 Pfam PF03471 Transporter associated domain 349 427 5.3E-23 T 17-10-2018 IPR005170 Transporter-associated domain VI35_13480 fde8e002a4afe68701d7650660afd5f5 439 Gene3D G3DSA:3.10.580.10 195 348 5.7E-30 T 17-10-2018 VI35_13480 fde8e002a4afe68701d7650660afd5f5 439 SUPERFAMILY SSF54631 202 337 2.0E-19 T 17-10-2018 VI35_15275 2fe54e233a4360b7fb1cd8e764af9b38 351 SUPERFAMILY SSF111369 107 173 5.62E-5 T 17-10-2018 VI35_15275 2fe54e233a4360b7fb1cd8e764af9b38 351 SUPERFAMILY SSF111369 182 246 4.45E-5 T 17-10-2018 VI35_15275 2fe54e233a4360b7fb1cd8e764af9b38 351 Pfam PF13533 Biotin-lipoyl like 45 88 1.9E-15 T 17-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VI35_15275 2fe54e233a4360b7fb1cd8e764af9b38 351 SUPERFAMILY SSF111369 44 98 1.57E-9 T 17-10-2018 VI35_15275 2fe54e233a4360b7fb1cd8e764af9b38 351 Gene3D G3DSA:2.40.50.100 45 233 6.2E-36 T 17-10-2018 VI35_15275 2fe54e233a4360b7fb1cd8e764af9b38 351 Gene3D G3DSA:1.10.287.470 77 199 6.2E-36 T 17-10-2018 VI35_15275 2fe54e233a4360b7fb1cd8e764af9b38 351 Gene3D G3DSA:2.40.30.170 234 290 6.2E-36 T 17-10-2018 VI35_15275 2fe54e233a4360b7fb1cd8e764af9b38 351 Pfam PF13437 HlyD family secretion protein 200 278 6.8E-6 T 17-10-2018 VI35_03400 1da6ebc381b0c7134c66309aff67b8d9 337 Gene3D G3DSA:3.30.420.40 3 315 1.5E-130 T 17-10-2018 VI35_03400 1da6ebc381b0c7134c66309aff67b8d9 337 Pfam PF00814 Glycoprotease family 24 307 1.8E-100 T 17-10-2018 IPR000905 Gcp-like domain VI35_03400 1da6ebc381b0c7134c66309aff67b8d9 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 131 143 1.9E-51 T 17-10-2018 IPR017861 Kae1/TsaD family VI35_03400 1da6ebc381b0c7134c66309aff67b8d9 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 1.9E-51 T 17-10-2018 IPR017861 Kae1/TsaD family VI35_03400 1da6ebc381b0c7134c66309aff67b8d9 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 154 175 1.9E-51 T 17-10-2018 IPR017861 Kae1/TsaD family VI35_03400 1da6ebc381b0c7134c66309aff67b8d9 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 1.9E-51 T 17-10-2018 IPR017861 Kae1/TsaD family VI35_03400 1da6ebc381b0c7134c66309aff67b8d9 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 1.9E-51 T 17-10-2018 IPR017861 Kae1/TsaD family VI35_03400 1da6ebc381b0c7134c66309aff67b8d9 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 263 272 1.9E-51 T 17-10-2018 IPR017861 Kae1/TsaD family VI35_03400 1da6ebc381b0c7134c66309aff67b8d9 337 SUPERFAMILY SSF53067 3 122 1.99E-30 T 17-10-2018 VI35_03400 1da6ebc381b0c7134c66309aff67b8d9 337 SUPERFAMILY SSF53067 101 309 2.22E-44 T 17-10-2018 VI35_03400 1da6ebc381b0c7134c66309aff67b8d9 337 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 306 8.8E-125 T 17-10-2018 IPR017861 Kae1/TsaD family VI35_03400 1da6ebc381b0c7134c66309aff67b8d9 337 ProSitePatterns PS01016 Glycoprotease family signature. 96 116 - T 17-10-2018 IPR017860 Peptidase M22, conserved site Reactome: R-HSA-6782315 VI35_03400 1da6ebc381b0c7134c66309aff67b8d9 337 Gene3D G3DSA:3.30.420.40 129 293 1.5E-130 T 17-10-2018 VI35_03400 1da6ebc381b0c7134c66309aff67b8d9 337 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 331 62.905 T 17-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 VI35_03400 1da6ebc381b0c7134c66309aff67b8d9 337 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 313 2.5E-135 T 17-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 VI35_14380 dc753f8c4485ffb42544c548e9df0bf4 368 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 8 349 1.2E-147 T 17-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 VI35_14380 dc753f8c4485ffb42544c548e9df0bf4 368 SUPERFAMILY SSF51569 9 348 6.07E-122 T 17-10-2018 VI35_14380 dc753f8c4485ffb42544c548e9df0bf4 368 Pfam PF00793 DAHP synthetase I family 42 338 1.8E-92 T 17-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 VI35_14380 dc753f8c4485ffb42544c548e9df0bf4 368 PIRSF PIRSF001361 3 352 2.8E-145 T 17-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 VI35_14380 dc753f8c4485ffb42544c548e9df0bf4 368 Gene3D G3DSA:3.20.20.70 4 350 6.8E-143 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_19135 b08ea1f132f2606da2d31f0f9e0b2419 395 SUPERFAMILY SSF56935 63 395 1.22E-49 T 17-10-2018 VI35_19135 b08ea1f132f2606da2d31f0f9e0b2419 395 Pfam PF13609 Gram-negative porin 49 369 5.9E-29 T 17-10-2018 VI35_19135 b08ea1f132f2606da2d31f0f9e0b2419 395 Gene3D G3DSA:2.40.160.10 63 395 2.8E-77 T 17-10-2018 IPR023614 Porin domain superfamily VI35_16550 656bd48911f170ef3f62e38b997edb43 85 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 85 29.322 T 17-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_16550 656bd48911f170ef3f62e38b997edb43 85 Gene3D G3DSA:2.40.50.100 21 85 7.0E-30 T 17-10-2018 VI35_16550 656bd48911f170ef3f62e38b997edb43 85 Pfam PF01016 Ribosomal L27 protein 2 82 6.1E-39 T 17-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_16550 656bd48911f170ef3f62e38b997edb43 85 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 17-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_16550 656bd48911f170ef3f62e38b997edb43 85 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 83 8.3E-43 T 17-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_16550 656bd48911f170ef3f62e38b997edb43 85 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 71 2.0E-16 T 17-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_16550 656bd48911f170ef3f62e38b997edb43 85 PRINTS PR00063 Ribosomal protein L27 signature 54 78 7.8E-38 T 17-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_16550 656bd48911f170ef3f62e38b997edb43 85 PRINTS PR00063 Ribosomal protein L27 signature 29 53 7.8E-38 T 17-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_16550 656bd48911f170ef3f62e38b997edb43 85 PRINTS PR00063 Ribosomal protein L27 signature 4 28 7.8E-38 T 17-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_16550 656bd48911f170ef3f62e38b997edb43 85 SUPERFAMILY SSF110324 2 82 4.19E-34 T 17-10-2018 VI35_07270 1bca41ee0f7c1dabcef0749bdab57041 116 SUPERFAMILY SSF52833 5 115 3.11E-31 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_07270 1bca41ee0f7c1dabcef0749bdab57041 116 Gene3D G3DSA:3.40.30.10 1 116 1.2E-46 T 17-10-2018 VI35_07270 1bca41ee0f7c1dabcef0749bdab57041 116 Pfam PF03960 ArsC family 7 114 3.4E-18 T 17-10-2018 IPR006660 Arsenate reductase-like VI35_07270 1bca41ee0f7c1dabcef0749bdab57041 116 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 5 115 1.4E-44 T 17-10-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 VI35_07710 df45ed0c2d672d0d97216a5d49a4022f 447 ProSitePatterns PS00483 Dihydroorotase signature 2. 310 321 - T 17-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VI35_07710 df45ed0c2d672d0d97216a5d49a4022f 447 Pfam PF01979 Amidohydrolase family 51 427 6.4E-18 T 17-10-2018 IPR006680 Amidohydrolase-related GO:0016787 VI35_07710 df45ed0c2d672d0d97216a5d49a4022f 447 Gene3D G3DSA:3.20.20.140 55 414 3.6E-138 T 17-10-2018 VI35_07710 df45ed0c2d672d0d97216a5d49a4022f 447 SUPERFAMILY SSF51338 1 438 8.2E-33 T 17-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VI35_07710 df45ed0c2d672d0d97216a5d49a4022f 447 Gene3D G3DSA:2.30.40.10 6 429 3.6E-138 T 17-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VI35_07710 df45ed0c2d672d0d97216a5d49a4022f 447 SUPERFAMILY SSF51556 54 375 5.57E-91 T 17-10-2018 IPR032466 Metal-dependent hydrolase VI35_10490 219e67356b2736511086e36fba7a31e3 272 Gene3D G3DSA:1.10.260.40 7 91 4.6E-9 T 17-10-2018 VI35_10490 219e67356b2736511086e36fba7a31e3 272 SMART SM00530 28 83 1.7E-6 T 17-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VI35_10490 219e67356b2736511086e36fba7a31e3 272 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 33 85 2.4E-6 T 17-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VI35_10490 219e67356b2736511086e36fba7a31e3 272 SUPERFAMILY SSF47413 22 85 5.91E-9 T 17-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VI35_20985 c9c9d61f7810210791f79c0029dcec32 82 Pfam PF02416 mttA/Hcf106 family 4 54 9.8E-14 T 17-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 VI35_20985 c9c9d61f7810210791f79c0029dcec32 82 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 80 23.934 T 17-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 VI35_20985 c9c9d61f7810210791f79c0029dcec32 82 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 46 2.2E-20 T 17-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 VI35_18150 f869e06bfd65617ced30369119914f36 406 SMART SM00490 261 342 7.8E-33 T 17-10-2018 IPR001650 Helicase, C-terminal VI35_18150 f869e06bfd65617ced30369119914f36 406 Hamap MF_00967 ATP-dependent RNA helicase SrmB [srmB]. 3 406 50.359 T 17-10-2018 IPR028621 ATP-dependent RNA helicase SrmB GO:0000027|GO:0004004 VI35_18150 f869e06bfd65617ced30369119914f36 406 Pfam PF00270 DEAD/DEAH box helicase 27 196 1.6E-44 T 17-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VI35_18150 f869e06bfd65617ced30369119914f36 406 SUPERFAMILY SSF52540 75 363 4.06E-69 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_18150 f869e06bfd65617ced30369119914f36 406 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 154 162 - T 17-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VI35_18150 f869e06bfd65617ced30369119914f36 406 Pfam PF00271 Helicase conserved C-terminal domain 234 342 2.7E-31 T 17-10-2018 IPR001650 Helicase, C-terminal VI35_18150 f869e06bfd65617ced30369119914f36 406 Gene3D G3DSA:3.40.50.300 217 406 2.0E-49 T 17-10-2018 VI35_18150 f869e06bfd65617ced30369119914f36 406 SMART SM00487 22 224 3.5E-54 T 17-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VI35_18150 f869e06bfd65617ced30369119914f36 406 Gene3D G3DSA:3.40.50.300 1 211 3.4E-70 T 17-10-2018 VI35_03615 a9b4fe17f7080e7d30ee1bd98b28f65f 176 SUPERFAMILY SSF53271 2 175 3.15E-52 T 17-10-2018 IPR029057 Phosphoribosyltransferase-like VI35_03615 a9b4fe17f7080e7d30ee1bd98b28f65f 176 Pfam PF00156 Phosphoribosyl transferase domain 14 159 2.0E-21 T 17-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 VI35_03615 a9b4fe17f7080e7d30ee1bd98b28f65f 176 Gene3D G3DSA:3.40.50.2020 1 176 2.5E-63 T 17-10-2018 VI35_03615 a9b4fe17f7080e7d30ee1bd98b28f65f 176 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 7 172 3.1E-70 T 17-10-2018 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620 VI35_20050 982d0af9d08fa2e238efb43bde445c49 603 SUPERFAMILY SSF54980 302 387 7.19E-16 T 17-10-2018 IPR035647 EF-G domain III/V-like VI35_20050 982d0af9d08fa2e238efb43bde445c49 603 Gene3D G3DSA:2.40.30.10 199 299 3.9E-32 T 17-10-2018 VI35_20050 982d0af9d08fa2e238efb43bde445c49 603 Gene3D G3DSA:2.40.50.250 483 599 8.4E-131 T 17-10-2018 VI35_20050 982d0af9d08fa2e238efb43bde445c49 603 Gene3D G3DSA:3.30.70.240 389 482 8.4E-131 T 17-10-2018 VI35_20050 982d0af9d08fa2e238efb43bde445c49 603 Gene3D G3DSA:3.40.50.300 1 198 9.1E-69 T 17-10-2018 VI35_20050 982d0af9d08fa2e238efb43bde445c49 603 Pfam PF00009 Elongation factor Tu GTP binding domain 4 194 1.9E-57 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_20050 982d0af9d08fa2e238efb43bde445c49 603 SUPERFAMILY SSF54980 398 512 4.17E-28 T 17-10-2018 IPR035647 EF-G domain III/V-like VI35_20050 982d0af9d08fa2e238efb43bde445c49 603 SUPERFAMILY SSF52540 3 207 1.61E-58 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_20050 982d0af9d08fa2e238efb43bde445c49 603 Pfam PF00679 Elongation factor G C-terminus 396 476 2.0E-22 T 17-10-2018 IPR000640 Elongation factor EFG, domain V-like VI35_20050 982d0af9d08fa2e238efb43bde445c49 603 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 150 2.0E-25 T 17-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VI35_20050 982d0af9d08fa2e238efb43bde445c49 603 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 44 59 - T 17-10-2018 IPR031157 Tr-type G domain, conserved site VI35_20050 982d0af9d08fa2e238efb43bde445c49 603 SUPERFAMILY SSF50447 151 299 1.28E-32 T 17-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VI35_20050 982d0af9d08fa2e238efb43bde445c49 603 Gene3D G3DSA:3.30.70.870 306 590 8.4E-131 T 17-10-2018 VI35_20050 982d0af9d08fa2e238efb43bde445c49 603 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 5 599 2.0E-292 T 17-10-2018 IPR006298 GTP-binding protein TypA GO:0005525 VI35_20050 982d0af9d08fa2e238efb43bde445c49 603 Pfam PF03144 Elongation factor Tu domain 2 219 289 7.7E-10 T 17-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 VI35_20050 982d0af9d08fa2e238efb43bde445c49 603 PRINTS PR00315 GTP-binding elongation factor signature 71 81 2.3E-14 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_20050 982d0af9d08fa2e238efb43bde445c49 603 PRINTS PR00315 GTP-binding elongation factor signature 87 98 2.3E-14 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_20050 982d0af9d08fa2e238efb43bde445c49 603 PRINTS PR00315 GTP-binding elongation factor signature 7 20 2.3E-14 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_20050 982d0af9d08fa2e238efb43bde445c49 603 PRINTS PR00315 GTP-binding elongation factor signature 51 59 2.3E-14 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_20050 982d0af9d08fa2e238efb43bde445c49 603 PRINTS PR00315 GTP-binding elongation factor signature 123 132 2.3E-14 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_15200 670348163515d4dc8eb689da26d478e1 324 Pfam PF12849 PBP superfamily domain 37 294 9.0E-33 T 17-10-2018 IPR024370 PBP domain VI35_15200 670348163515d4dc8eb689da26d478e1 324 Gene3D G3DSA:3.40.190.10 40 311 3.7E-104 T 17-10-2018 VI35_15200 670348163515d4dc8eb689da26d478e1 324 Gene3D G3DSA:3.40.190.10 125 267 3.7E-104 T 17-10-2018 VI35_15200 670348163515d4dc8eb689da26d478e1 324 TIGRFAM TIGR02136 ptsS_2: phosphate binding protein 11 309 4.4E-85 T 17-10-2018 IPR011862 Phosphate binding protein GO:0042301 VI35_15200 670348163515d4dc8eb689da26d478e1 324 SUPERFAMILY SSF53850 35 320 3.54E-73 T 17-10-2018 VI35_19785 74d3e0e4e6e6cef227ab6d8b063533d9 37 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 37 16.791 T 17-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_19785 74d3e0e4e6e6cef227ab6d8b063533d9 37 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 36 - T 17-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_19785 74d3e0e4e6e6cef227ab6d8b063533d9 37 Pfam PF00444 Ribosomal protein L36 1 37 2.6E-18 T 17-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_19785 74d3e0e4e6e6cef227ab6d8b063533d9 37 SUPERFAMILY SSF57840 1 37 1.7E-16 T 17-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_19785 74d3e0e4e6e6cef227ab6d8b063533d9 37 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 37 2.8E-23 T 17-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_19785 74d3e0e4e6e6cef227ab6d8b063533d9 37 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 10 37 3.0E-8 T 17-10-2018 VI35_12400 6fabfb6cfc2df62dff0e39ff4ddf1adb 111 SMART SM01323 19 103 2.2E-39 T 17-10-2018 IPR003849 Preprotein translocase YajC VI35_12400 6fabfb6cfc2df62dff0e39ff4ddf1adb 111 PRINTS PR01853 Bacterial YajC preprotein translocase signature 21 41 6.9E-15 T 17-10-2018 IPR003849 Preprotein translocase YajC VI35_12400 6fabfb6cfc2df62dff0e39ff4ddf1adb 111 PRINTS PR01853 Bacterial YajC preprotein translocase signature 59 77 6.9E-15 T 17-10-2018 IPR003849 Preprotein translocase YajC VI35_12400 6fabfb6cfc2df62dff0e39ff4ddf1adb 111 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 21 103 5.2E-31 T 17-10-2018 IPR003849 Preprotein translocase YajC VI35_12400 6fabfb6cfc2df62dff0e39ff4ddf1adb 111 Pfam PF02699 Preprotein translocase subunit 23 100 1.9E-26 T 17-10-2018 IPR003849 Preprotein translocase YajC VI35_00335 398dade9cf8ca7dc4c6f5af46ecceb3e 262 Hamap MF_00258 Glutamate racemase [murI]. 2 253 32.111 T 17-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 VI35_00335 398dade9cf8ca7dc4c6f5af46ecceb3e 262 Gene3D G3DSA:3.40.50.1860 6 239 1.6E-85 T 17-10-2018 VI35_00335 398dade9cf8ca7dc4c6f5af46ecceb3e 262 TIGRFAM TIGR00067 glut_race: glutamate racemase 4 219 5.3E-64 T 17-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 VI35_00335 398dade9cf8ca7dc4c6f5af46ecceb3e 262 SUPERFAMILY SSF53681 3 105 2.62E-31 T 17-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 VI35_00335 398dade9cf8ca7dc4c6f5af46ecceb3e 262 Gene3D G3DSA:3.40.50.1860 94 206 1.6E-85 T 17-10-2018 VI35_00335 398dade9cf8ca7dc4c6f5af46ecceb3e 262 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 69 77 - T 17-10-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 VI35_00335 398dade9cf8ca7dc4c6f5af46ecceb3e 262 Pfam PF01177 Asp/Glu/Hydantoin racemase 4 213 9.0E-27 T 17-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 VI35_00335 398dade9cf8ca7dc4c6f5af46ecceb3e 262 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 180 190 - T 17-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 VI35_00335 398dade9cf8ca7dc4c6f5af46ecceb3e 262 SUPERFAMILY SSF53681 107 255 2.09E-32 T 17-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 VI35_10050 747dd6d2139d27b688c58876b8ca38c1 478 Pfam PF13520 Amino acid permease 5 416 6.1E-72 T 17-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VI35_10050 747dd6d2139d27b688c58876b8ca38c1 478 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 3 476 2.5E-176 T 17-10-2018 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 VI35_10050 747dd6d2139d27b688c58876b8ca38c1 478 PIRSF PIRSF006060 1 470 2.4E-51 T 17-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VI35_10050 747dd6d2139d27b688c58876b8ca38c1 478 TIGRFAM TIGR03810 arg_ornith_anti: arginine-ornithine antiporter 3 476 8.8E-182 T 17-10-2018 IPR022461 Arginine/ornithine antiporter GO:0005887|GO:0006527|GO:0043858 VI35_10050 747dd6d2139d27b688c58876b8ca38c1 478 Gene3D G3DSA:1.20.1740.10 1 456 2.0E-62 T 17-10-2018 VI35_01150 f23f91c83232f386f882d187f4cb3d93 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 118 134 4.0E-12 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_01150 f23f91c83232f386f882d187f4cb3d93 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 144 163 4.0E-12 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_01150 f23f91c83232f386f882d187f4cb3d93 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 181 4.0E-12 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_01150 f23f91c83232f386f882d187f4cb3d93 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 70 81 4.0E-12 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_01150 f23f91c83232f386f882d187f4cb3d93 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 4.0E-12 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_01150 f23f91c83232f386f882d187f4cb3d93 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 195 215 4.0E-12 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_01150 f23f91c83232f386f882d187f4cb3d93 234 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 228 1.1E-29 T 17-10-2018 VI35_01150 f23f91c83232f386f882d187f4cb3d93 234 SUPERFAMILY SSF51735 1 230 7.74E-45 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_01150 f23f91c83232f386f882d187f4cb3d93 234 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 131 159 - T 17-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 VI35_01150 f23f91c83232f386f882d187f4cb3d93 234 Gene3D G3DSA:3.40.50.720 1 233 1.9E-49 T 17-10-2018 VI35_20495 f493267b166642b7d26df81921b470fe 807 SMART SM00563 304 431 4.4E-26 T 17-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VI35_20495 f493267b166642b7d26df81921b470fe 807 Pfam PF01553 Acyltransferase 288 427 1.5E-23 T 17-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VI35_20495 f493267b166642b7d26df81921b470fe 807 TIGRFAM TIGR03703 plsB: glycerol-3-phosphate O-acyltransferase 11 801 0.0 T 17-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 VI35_20495 f493267b166642b7d26df81921b470fe 807 SUPERFAMILY SSF69593 243 518 1.03E-27 T 17-10-2018 VI35_20495 f493267b166642b7d26df81921b470fe 807 Hamap MF_00393 Glycerol-3-phosphate acyltransferase [plsB]. 13 805 29.244 T 17-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 VI35_20495 f493267b166642b7d26df81921b470fe 807 PIRSF PIRSF500064 4 804 1.4E-296 T 17-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 VI35_20495 f493267b166642b7d26df81921b470fe 807 PIRSF PIRSF000437 19 805 3.4E-285 T 17-10-2018 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase GO:0008374|GO:0044255 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166 VI35_03530 d73885d35934cadc3190e07affba91d2 574 Pfam PF02080 TrkA-C domain 210 277 1.4E-8 T 17-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 VI35_03530 d73885d35934cadc3190e07affba91d2 574 Pfam PF02080 TrkA-C domain 293 349 4.8E-10 T 17-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 VI35_03530 d73885d35934cadc3190e07affba91d2 574 SUPERFAMILY SSF116726 198 282 2.62E-15 T 17-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VI35_03530 d73885d35934cadc3190e07affba91d2 574 Gene3D G3DSA:3.30.70.1450 290 354 4.2E-13 T 17-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VI35_03530 d73885d35934cadc3190e07affba91d2 574 Gene3D G3DSA:3.30.70.1450 206 287 3.6E-12 T 17-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VI35_03530 d73885d35934cadc3190e07affba91d2 574 Pfam PF03600 Citrate transporter 19 518 4.9E-31 T 17-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 VI35_03530 d73885d35934cadc3190e07affba91d2 574 SUPERFAMILY SSF116726 290 350 4.84E-14 T 17-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VI35_05920 d2894312187cb56758e20b90325a66f1 131 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 49 122 9.3E-33 T 17-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 VI35_05920 d2894312187cb56758e20b90325a66f1 131 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 51 121 2.5E-24 T 17-10-2018 IPR001543 Surface presentation of antigen (SpoA) VI35_05920 d2894312187cb56758e20b90325a66f1 131 Gene3D G3DSA:2.30.330.10 38 131 5.0E-33 T 17-10-2018 IPR036429 SpoA-like superfamily VI35_05920 d2894312187cb56758e20b90325a66f1 131 PRINTS PR00956 Flagellar motor switch protein FliN signature 97 112 2.7E-28 T 17-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 VI35_05920 d2894312187cb56758e20b90325a66f1 131 PRINTS PR00956 Flagellar motor switch protein FliN signature 51 67 2.7E-28 T 17-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 VI35_05920 d2894312187cb56758e20b90325a66f1 131 PRINTS PR00956 Flagellar motor switch protein FliN signature 68 84 2.7E-28 T 17-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 VI35_05920 d2894312187cb56758e20b90325a66f1 131 PRINTS PR00956 Flagellar motor switch protein FliN signature 84 97 2.7E-28 T 17-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 VI35_05920 d2894312187cb56758e20b90325a66f1 131 SUPERFAMILY SSF101801 49 129 3.79E-24 T 17-10-2018 IPR036429 SpoA-like superfamily VI35_09020 2b52248d50e270a06430ca7755edb2c0 202 Pfam PF06763 Prophage minor tail protein Z (GPZ) 7 200 2.1E-29 T 17-10-2018 IPR010633 Bacteriophage lambda, GpZ, minor tail VI35_16230 39dcaa622c53ee968324c0b3b74f964c 145 SUPERFAMILY SSF54593 1 142 5.81E-31 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_16230 39dcaa622c53ee968324c0b3b74f964c 145 Gene3D G3DSA:3.10.180.10 8 145 6.3E-40 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_14040 0e9fef9d872e4f13bf2f7ee6afb82fb6 461 SUPERFAMILY SSF51366 7 257 5.3E-82 T 17-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 VI35_14040 0e9fef9d872e4f13bf2f7ee6afb82fb6 461 Gene3D G3DSA:3.20.20.70 260 455 9.7E-175 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_14040 0e9fef9d872e4f13bf2f7ee6afb82fb6 461 SUPERFAMILY SSF51366 260 459 7.53E-58 T 17-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 VI35_14040 0e9fef9d872e4f13bf2f7ee6afb82fb6 461 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 261 455 1.4E-49 T 17-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 VI35_14040 0e9fef9d872e4f13bf2f7ee6afb82fb6 461 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 259 461 33.535 T 17-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 VI35_14040 0e9fef9d872e4f13bf2f7ee6afb82fb6 461 Gene3D G3DSA:3.20.20.70 12 259 9.7E-175 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_14040 0e9fef9d872e4f13bf2f7ee6afb82fb6 461 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 54 72 - T 17-10-2018 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 VI35_14040 0e9fef9d872e4f13bf2f7ee6afb82fb6 461 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 7 258 34.671 T 17-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 VI35_14040 0e9fef9d872e4f13bf2f7ee6afb82fb6 461 Pfam PF00218 Indole-3-glycerol phosphate synthase 9 256 1.8E-94 T 17-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 VI35_06675 b2d75ac4a385ad2a3d455d99343e5eb4 110 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 91 1.4E-20 T 17-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 VI35_06675 b2d75ac4a385ad2a3d455d99343e5eb4 110 Gene3D G3DSA:3.30.160.100 1 103 4.5E-32 T 17-10-2018 IPR036567 Ribosome hibernation promotion factor-like VI35_06675 b2d75ac4a385ad2a3d455d99343e5eb4 110 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 96 2.2E-24 T 17-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 VI35_06675 b2d75ac4a385ad2a3d455d99343e5eb4 110 SUPERFAMILY SSF69754 1 98 2.62E-28 T 17-10-2018 IPR036567 Ribosome hibernation promotion factor-like VI35_12015 233f4711d1891236bafcefd55fa6f588 235 PIRSF PIRSF006293 1 222 2.6E-83 T 17-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 VI35_12015 233f4711d1891236bafcefd55fa6f588 235 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 4 205 4.2E-84 T 17-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 VI35_12015 233f4711d1891236bafcefd55fa6f588 235 SUPERFAMILY SSF52402 1 212 1.61E-67 T 17-10-2018 VI35_12015 233f4711d1891236bafcefd55fa6f588 235 Pfam PF06508 Queuosine biosynthesis protein QueC 3 212 5.5E-84 T 17-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 VI35_12015 233f4711d1891236bafcefd55fa6f588 235 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 2 217 50.731 T 17-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 VI35_12015 233f4711d1891236bafcefd55fa6f588 235 Gene3D G3DSA:3.40.50.620 1 230 4.1E-80 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_11005 411d48314c501dccdc7084370483504a 251 Pfam PF00027 Cyclic nucleotide-binding domain 51 132 7.4E-15 T 17-10-2018 IPR000595 Cyclic nucleotide-binding domain VI35_11005 411d48314c501dccdc7084370483504a 251 SMART SM00100 30 151 1.5E-19 T 17-10-2018 IPR000595 Cyclic nucleotide-binding domain VI35_11005 411d48314c501dccdc7084370483504a 251 Pfam PF13545 Crp-like helix-turn-helix domain 168 239 5.7E-17 T 17-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 VI35_11005 411d48314c501dccdc7084370483504a 251 SMART SM00419 187 235 1.6E-17 T 17-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 VI35_11005 411d48314c501dccdc7084370483504a 251 SUPERFAMILY SSF51206 23 162 5.11E-31 T 17-10-2018 IPR018490 Cyclic nucleotide-binding-like VI35_11005 411d48314c501dccdc7084370483504a 251 SUPERFAMILY SSF46785 165 241 1.47E-18 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_11005 411d48314c501dccdc7084370483504a 251 Gene3D G3DSA:2.60.120.10 43 164 2.2E-47 T 17-10-2018 IPR014710 RmlC-like jelly roll fold VI35_11005 411d48314c501dccdc7084370483504a 251 ProSitePatterns PS00042 Crp-type HTH domain signature. 195 218 - T 17-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 VI35_11005 411d48314c501dccdc7084370483504a 251 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 193 209 6.0E-13 T 17-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 VI35_11005 411d48314c501dccdc7084370483504a 251 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 209 224 6.0E-13 T 17-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 VI35_11005 411d48314c501dccdc7084370483504a 251 Gene3D G3DSA:1.10.10.10 165 247 2.7E-24 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_01805 41b5df4cfc7e2d777c777a363403ac48 331 Pfam PF01380 SIS domain 48 179 2.9E-33 T 17-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 VI35_01805 41b5df4cfc7e2d777c777a363403ac48 331 Gene3D G3DSA:3.10.580.10 203 328 1.2E-42 T 17-10-2018 VI35_01805 41b5df4cfc7e2d777c777a363403ac48 331 PIRSF PIRSF004692 2 331 4.7E-132 T 17-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 VI35_01805 41b5df4cfc7e2d777c777a363403ac48 331 Pfam PF00571 CBS domain 276 328 7.8E-8 T 17-10-2018 IPR000644 CBS domain VI35_01805 41b5df4cfc7e2d777c777a363403ac48 331 Pfam PF00571 CBS domain 219 264 7.4E-4 T 17-10-2018 IPR000644 CBS domain VI35_01805 41b5df4cfc7e2d777c777a363403ac48 331 Gene3D G3DSA:3.40.50.10490 13 202 2.0E-67 T 17-10-2018 VI35_01805 41b5df4cfc7e2d777c777a363403ac48 331 SUPERFAMILY SSF53697 18 328 1.02E-69 T 17-10-2018 VI35_01805 41b5df4cfc7e2d777c777a363403ac48 331 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 52 320 3.1E-111 T 17-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 VI35_01805 41b5df4cfc7e2d777c777a363403ac48 331 SMART SM00116 217 265 17.0 T 17-10-2018 IPR000644 CBS domain VI35_01805 41b5df4cfc7e2d777c777a363403ac48 331 SMART SM00116 282 330 0.046 T 17-10-2018 IPR000644 CBS domain VI35_06600 bf99cb3ef5e33a585cba7738a3029c68 365 TIGRFAM TIGR02282 MltB: lytic murein transglycosylase B 67 357 7.3E-117 T 17-10-2018 IPR011757 Lytic transglycosylase MltB VI35_06600 bf99cb3ef5e33a585cba7738a3029c68 365 SUPERFAMILY SSF53955 58 357 1.17E-94 T 17-10-2018 IPR023346 Lysozyme-like domain superfamily VI35_06600 bf99cb3ef5e33a585cba7738a3029c68 365 Gene3D G3DSA:1.10.530.10 104 357 1.5E-116 T 17-10-2018 VI35_06600 bf99cb3ef5e33a585cba7738a3029c68 365 Gene3D G3DSA:1.10.8.350 65 238 1.5E-116 T 17-10-2018 VI35_06600 bf99cb3ef5e33a585cba7738a3029c68 365 Pfam PF13406 Transglycosylase SLT domain 62 355 1.2E-94 T 17-10-2018 IPR031304 Transglycosylase SLT domain 2 VI35_07445 d7a209bec274c04f71debfb010f17500 342 SMART SM00858 284 342 5.2E-8 T 17-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 VI35_07445 d7a209bec274c04f71debfb010f17500 342 SUPERFAMILY SSF51269 281 341 8.95E-16 T 17-10-2018 IPR036732 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain superfamily Reactome: R-HSA-4085001 VI35_07445 d7a209bec274c04f71debfb010f17500 342 Pfam PF03102 NeuB family 31 269 7.1E-96 T 17-10-2018 IPR013132 N-acetylneuraminic acid synthase, N-terminal GO:0016051 Reactome: R-HSA-4085001 VI35_07445 d7a209bec274c04f71debfb010f17500 342 Pfam PF08666 SAF domain 285 341 2.2E-6 T 17-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 VI35_07445 d7a209bec274c04f71debfb010f17500 342 TIGRFAM TIGR03586 PseI: pseudaminic acid synthase 10 336 4.0E-152 T 17-10-2018 IPR020030 Pseudaminic acid biosynthesis, PseI KEGG: 00520+2.5.1.97|MetaCyc: PWY-6143 VI35_07445 d7a209bec274c04f71debfb010f17500 342 Gene3D G3DSA:3.90.1210.10 285 342 3.4E-18 T 17-10-2018 VI35_07445 d7a209bec274c04f71debfb010f17500 342 SUPERFAMILY SSF51569 8 294 1.83E-86 T 17-10-2018 VI35_07445 d7a209bec274c04f71debfb010f17500 342 Gene3D G3DSA:3.20.20.70 4 269 3.4E-93 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_14190 55482b032b474c0897507adb6b59c472 146 Gene3D G3DSA:2.60.40.420 20 146 1.7E-43 T 17-10-2018 IPR008972 Cupredoxin VI35_14190 55482b032b474c0897507adb6b59c472 146 TIGRFAM TIGR02695 azurin: azurin 22 145 6.8E-54 T 17-10-2018 IPR014068 Azurin VI35_14190 55482b032b474c0897507adb6b59c472 146 ProDom PD003655 COPPER ELECTRON AZURIN METAL-BINDING PERIPLASMIC PRECURSOR SIGNAL SEQUENCING DIRECT MEMBRANE 26 144 4.0E-40 T 17-10-2018 VI35_14190 55482b032b474c0897507adb6b59c472 146 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 21 145 2.0E-22 T 17-10-2018 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 VI35_14190 55482b032b474c0897507adb6b59c472 146 SUPERFAMILY SSF49503 21 145 1.81E-41 T 17-10-2018 IPR008972 Cupredoxin VI35_02500 6b9a9145c073ebb09ca1970a83de9265 206 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 142 176 5.0E-11 T 17-10-2018 IPR001451 Hexapeptide repeat VI35_02500 6b9a9145c073ebb09ca1970a83de9265 206 SUPERFAMILY SSF51161 16 199 4.44E-53 T 17-10-2018 IPR011004 Trimeric LpxA-like superfamily VI35_02500 6b9a9145c073ebb09ca1970a83de9265 206 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 97 121 0.083 T 17-10-2018 IPR001451 Hexapeptide repeat VI35_02500 6b9a9145c073ebb09ca1970a83de9265 206 Pfam PF12464 Maltose acetyltransferase 19 61 7.1E-10 T 17-10-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 VI35_02500 6b9a9145c073ebb09ca1970a83de9265 206 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 150 178 - T 17-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 VI35_02500 6b9a9145c073ebb09ca1970a83de9265 206 SMART SM01266 17 70 2.0E-10 T 17-10-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 VI35_02500 6b9a9145c073ebb09ca1970a83de9265 206 Gene3D G3DSA:2.160.10.10 12 195 6.1E-66 T 17-10-2018 VI35_04905 c70c329741be65d967cbd8d1be4f4209 89 Gene3D G3DSA:1.10.287.10 2 89 2.2E-35 T 17-10-2018 VI35_04905 c70c329741be65d967cbd8d1be4f4209 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 21.461 T 17-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_04905 c70c329741be65d967cbd8d1be4f4209 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 17-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_04905 c70c329741be65d967cbd8d1be4f4209 89 SUPERFAMILY SSF47060 3 89 7.06E-35 T 17-10-2018 IPR009068 S15/NS1, RNA-binding VI35_04905 c70c329741be65d967cbd8d1be4f4209 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 6 89 1.5E-37 T 17-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_04905 c70c329741be65d967cbd8d1be4f4209 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 10 88 1.0E-32 T 17-10-2018 VI35_04905 c70c329741be65d967cbd8d1be4f4209 89 SMART SM01387 8 88 3.0E-52 T 17-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_04905 c70c329741be65d967cbd8d1be4f4209 89 Pfam PF00312 Ribosomal protein S15 8 88 6.0E-37 T 17-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_03040 2609b749b7e8ff1b03c3a0b2d2576aa9 461 Gene3D G3DSA:1.20.200.10 108 445 4.6E-139 T 17-10-2018 VI35_03040 2609b749b7e8ff1b03c3a0b2d2576aa9 461 Pfam PF14698 Argininosuccinate lyase C-terminal 364 431 5.7E-22 T 17-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 VI35_03040 2609b749b7e8ff1b03c3a0b2d2576aa9 461 Gene3D G3DSA:1.10.275.10 1 107 3.1E-37 T 17-10-2018 IPR024083 Fumarase/histidase, N-terminal VI35_03040 2609b749b7e8ff1b03c3a0b2d2576aa9 461 TIGRFAM TIGR00838 argH: argininosuccinate lyase 3 454 3.0E-197 T 17-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 VI35_03040 2609b749b7e8ff1b03c3a0b2d2576aa9 461 SUPERFAMILY SSF48557 3 456 8.95E-136 T 17-10-2018 IPR008948 L-Aspartase-like GO:0003824 VI35_03040 2609b749b7e8ff1b03c3a0b2d2576aa9 461 PRINTS PR00149 Fumarate lyase superfamily signature 232 259 5.9E-28 T 17-10-2018 IPR000362 Fumarate lyase family VI35_03040 2609b749b7e8ff1b03c3a0b2d2576aa9 461 PRINTS PR00149 Fumarate lyase superfamily signature 103 121 5.9E-28 T 17-10-2018 IPR000362 Fumarate lyase family VI35_03040 2609b749b7e8ff1b03c3a0b2d2576aa9 461 PRINTS PR00149 Fumarate lyase superfamily signature 276 292 5.9E-28 T 17-10-2018 IPR000362 Fumarate lyase family VI35_03040 2609b749b7e8ff1b03c3a0b2d2576aa9 461 PRINTS PR00149 Fumarate lyase superfamily signature 148 166 5.9E-28 T 17-10-2018 IPR000362 Fumarate lyase family VI35_03040 2609b749b7e8ff1b03c3a0b2d2576aa9 461 Pfam PF00206 Lyase 6 301 9.1E-95 T 17-10-2018 IPR022761 Fumarate lyase, N-terminal VI35_03040 2609b749b7e8ff1b03c3a0b2d2576aa9 461 PRINTS PR00145 Argininosuccinate lyase family signature 311 330 1.4E-65 T 17-10-2018 VI35_03040 2609b749b7e8ff1b03c3a0b2d2576aa9 461 PRINTS PR00145 Argininosuccinate lyase family signature 102 124 1.4E-65 T 17-10-2018 VI35_03040 2609b749b7e8ff1b03c3a0b2d2576aa9 461 PRINTS PR00145 Argininosuccinate lyase family signature 276 292 1.4E-65 T 17-10-2018 VI35_03040 2609b749b7e8ff1b03c3a0b2d2576aa9 461 PRINTS PR00145 Argininosuccinate lyase family signature 194 210 1.4E-65 T 17-10-2018 VI35_03040 2609b749b7e8ff1b03c3a0b2d2576aa9 461 PRINTS PR00145 Argininosuccinate lyase family signature 232 256 1.4E-65 T 17-10-2018 VI35_03040 2609b749b7e8ff1b03c3a0b2d2576aa9 461 PRINTS PR00145 Argininosuccinate lyase family signature 143 163 1.4E-65 T 17-10-2018 VI35_03040 2609b749b7e8ff1b03c3a0b2d2576aa9 461 Gene3D G3DSA:1.10.40.30 363 433 4.6E-139 T 17-10-2018 VI35_03040 2609b749b7e8ff1b03c3a0b2d2576aa9 461 ProSitePatterns PS00163 Fumarate lyases signature. 276 285 - T 17-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 VI35_03040 2609b749b7e8ff1b03c3a0b2d2576aa9 461 Hamap MF_00006 Argininosuccinate lyase [argH]. 2 454 40.022 T 17-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 VI35_09460 b023cfc8fb0d2921254913d388f0d576 936 Gene3D G3DSA:3.40.50.11610 724 930 1.7E-168 T 17-10-2018 VI35_09460 b023cfc8fb0d2921254913d388f0d576 936 Gene3D G3DSA:3.40.50.970 168 534 3.8E-146 T 17-10-2018 VI35_09460 b023cfc8fb0d2921254913d388f0d576 936 SUPERFAMILY SSF52518 576 794 9.81E-53 T 17-10-2018 IPR029061 Thiamin diphosphate-binding fold VI35_09460 b023cfc8fb0d2921254913d388f0d576 936 Gene3D G3DSA:3.40.50.12470 557 803 1.7E-168 T 17-10-2018 VI35_09460 b023cfc8fb0d2921254913d388f0d576 936 PIRSF PIRSF000157 1 935 0.0 T 17-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 VI35_09460 b023cfc8fb0d2921254913d388f0d576 936 SMART SM00861 594 787 5.3E-60 T 17-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain VI35_09460 b023cfc8fb0d2921254913d388f0d576 936 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 12 50 2.1E-16 T 17-10-2018 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 VI35_09460 b023cfc8fb0d2921254913d388f0d576 936 Gene3D G3DSA:1.10.287.1150 85 167 1.5E-27 T 17-10-2018 VI35_09460 b023cfc8fb0d2921254913d388f0d576 936 Pfam PF00676 Dehydrogenase E1 component 220 513 4.0E-50 T 17-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 VI35_09460 b023cfc8fb0d2921254913d388f0d576 936 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 15 933 0.0 T 17-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 VI35_09460 b023cfc8fb0d2921254913d388f0d576 936 SUPERFAMILY SSF52518 122 532 8.51E-86 T 17-10-2018 IPR029061 Thiamin diphosphate-binding fold VI35_09460 b023cfc8fb0d2921254913d388f0d576 936 Pfam PF02779 Transketolase, pyrimidine binding domain 594 788 2.7E-64 T 17-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain VI35_09460 b023cfc8fb0d2921254913d388f0d576 936 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 792 933 3.1E-52 T 17-10-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 VI35_01610 33131501bbaa6fd6d11058a7b6c570e6 413 TIGRFAM TIGR03644 marine_trans_1: probable ammonium transporter, marine subtype 13 406 1.5E-201 T 17-10-2018 IPR019879 Ammonium transporter, marine subtype VI35_01610 33131501bbaa6fd6d11058a7b6c570e6 413 ProSitePatterns PS01219 Ammonium transporters signature. 164 189 - T 17-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 VI35_01610 33131501bbaa6fd6d11058a7b6c570e6 413 SUPERFAMILY SSF111352 13 384 2.09E-107 T 17-10-2018 VI35_01610 33131501bbaa6fd6d11058a7b6c570e6 413 TIGRFAM TIGR00836 amt: ammonium transporter 16 403 8.6E-107 T 17-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 VI35_01610 33131501bbaa6fd6d11058a7b6c570e6 413 Pfam PF00909 Ammonium Transporter Family 20 403 1.8E-105 T 17-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 VI35_01610 33131501bbaa6fd6d11058a7b6c570e6 413 Gene3D G3DSA:1.10.3430.10 2 412 1.6E-123 T 17-10-2018 IPR029020 Ammonium/urea transporter VI35_17105 c6e7a31ef55911958a885f0ba131a2a0 230 Pfam PF01177 Asp/Glu/Hydantoin racemase 7 224 5.8E-59 T 17-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 VI35_17105 c6e7a31ef55911958a885f0ba131a2a0 230 TIGRFAM TIGR00035 asp_race: aspartate racemase 1 230 1.4E-66 T 17-10-2018 IPR004380 Aspartate racemase GO:0006520|GO:0016855 VI35_17105 c6e7a31ef55911958a885f0ba131a2a0 230 SUPERFAMILY SSF53681 119 228 7.36E-33 T 17-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 VI35_17105 c6e7a31ef55911958a885f0ba131a2a0 230 SUPERFAMILY SSF53681 1 116 2.16E-34 T 17-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 VI35_17105 c6e7a31ef55911958a885f0ba131a2a0 230 Gene3D G3DSA:3.40.50.1860 104 215 2.1E-81 T 17-10-2018 VI35_17105 c6e7a31ef55911958a885f0ba131a2a0 230 Gene3D G3DSA:3.40.50.1860 4 224 2.1E-81 T 17-10-2018 VI35_09935 0f3ee821902ad24fc73c437cb32caf8f 530 SMART SM00382 26 238 2.5E-9 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_09935 0f3ee821902ad24fc73c437cb32caf8f 530 SMART SM00382 344 512 4.1E-10 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_09935 0f3ee821902ad24fc73c437cb32caf8f 530 Pfam PF00005 ABC transporter 18 184 1.0E-19 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_09935 0f3ee821902ad24fc73c437cb32caf8f 530 Gene3D G3DSA:3.40.50.300 282 528 1.6E-56 T 17-10-2018 VI35_09935 0f3ee821902ad24fc73c437cb32caf8f 530 SUPERFAMILY SSF52540 298 524 4.12E-48 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_09935 0f3ee821902ad24fc73c437cb32caf8f 530 SUPERFAMILY SSF52540 6 237 6.42E-46 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_09935 0f3ee821902ad24fc73c437cb32caf8f 530 Pfam PF12848 ABC transporter 224 309 5.2E-21 T 17-10-2018 IPR032781 ABC-transporter extension domain VI35_09935 0f3ee821902ad24fc73c437cb32caf8f 530 Gene3D G3DSA:3.40.50.300 2 278 6.1E-57 T 17-10-2018 VI35_09935 0f3ee821902ad24fc73c437cb32caf8f 530 Pfam PF00005 ABC transporter 336 467 5.0E-23 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_19960 b7df474b1f8b89e92f77bfa1a3c62535 143 Gene3D G3DSA:3.40.250.10 42 143 1.3E-27 T 17-10-2018 IPR036873 Rhodanese-like domain superfamily VI35_19960 b7df474b1f8b89e92f77bfa1a3c62535 143 Pfam PF00581 Rhodanese-like domain 48 134 9.5E-18 T 17-10-2018 IPR001763 Rhodanese-like domain VI35_19960 b7df474b1f8b89e92f77bfa1a3c62535 143 SMART SM00450 40 138 4.9E-22 T 17-10-2018 IPR001763 Rhodanese-like domain VI35_19960 b7df474b1f8b89e92f77bfa1a3c62535 143 SUPERFAMILY SSF52821 20 141 3.54E-31 T 17-10-2018 IPR036873 Rhodanese-like domain superfamily VI35_10225 3b2d8e14805a39498094d82a80adf594 68 Pfam PF06786 Uncharacterised protein family (UPF0253) 1 67 6.7E-33 T 17-10-2018 IPR009624 Uncharacterised protein family UPF0253 VI35_10225 3b2d8e14805a39498094d82a80adf594 68 Hamap MF_01064 UPF0253 protein YaeP [yaeP]. 1 68 29.243 T 17-10-2018 IPR009624 Uncharacterised protein family UPF0253 VI35_10225 3b2d8e14805a39498094d82a80adf594 68 ProDom PD054643 UPF0253 YAEP CYTOPLASMIC VP2335 YPO1064.1/Y3113/YP2785 VC0872 VV2574 PBPRA2947 VV11836 7 65 9.0E-16 T 17-10-2018 IPR009624 Uncharacterised protein family UPF0253 VI35_12025 8e78743f0e4c0154b6651ca1c2a150db 185 SUPERFAMILY SSF144091 4 177 2.49E-24 T 17-10-2018 VI35_12025 8e78743f0e4c0154b6651ca1c2a150db 185 TIGRFAM TIGR03902 rhom_GG_sort: rhombosortase 21 172 3.5E-49 T 17-10-2018 IPR023826 Rhomboid-like serine protease, proteobacteria VI35_12025 8e78743f0e4c0154b6651ca1c2a150db 185 Pfam PF01694 Rhomboid family 31 174 4.2E-10 T 17-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 VI35_12025 8e78743f0e4c0154b6651ca1c2a150db 185 Gene3D G3DSA:1.20.1540.10 1 184 4.1E-13 T 17-10-2018 IPR035952 Rhomboid-like superfamily VI35_20010 f9b5adc95709b4f9153866aa9967e4dd 457 Pfam PF02447 GntP family permease 14 454 3.6E-120 T 17-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 VI35_20010 f9b5adc95709b4f9153866aa9967e4dd 457 PIRSF PIRSF002746 8 457 1.9E-146 T 17-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 VI35_20010 f9b5adc95709b4f9153866aa9967e4dd 457 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 13 456 1.1E-107 T 17-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 VI35_11205 ec1575be77748b33b09ae17704fe5884 397 Pfam PF03222 Tryptophan/tyrosine permease family 2 384 9.8E-105 T 17-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 VI35_11205 ec1575be77748b33b09ae17704fe5884 397 PIRSF PIRSF006060 2 59 0.16 T 17-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VI35_11205 ec1575be77748b33b09ae17704fe5884 397 PIRSF PIRSF006060 65 297 5.7E-7 T 17-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VI35_11205 ec1575be77748b33b09ae17704fe5884 397 PIRSF PIRSF006060 299 396 2.2 T 17-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VI35_11205 ec1575be77748b33b09ae17704fe5884 397 PRINTS PR00166 Aromatic amino acid permease signature 81 101 2.3E-74 T 17-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VI35_11205 ec1575be77748b33b09ae17704fe5884 397 PRINTS PR00166 Aromatic amino acid permease signature 311 329 2.3E-74 T 17-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VI35_11205 ec1575be77748b33b09ae17704fe5884 397 PRINTS PR00166 Aromatic amino acid permease signature 146 166 2.3E-74 T 17-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VI35_11205 ec1575be77748b33b09ae17704fe5884 397 PRINTS PR00166 Aromatic amino acid permease signature 180 202 2.3E-74 T 17-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VI35_11205 ec1575be77748b33b09ae17704fe5884 397 PRINTS PR00166 Aromatic amino acid permease signature 277 296 2.3E-74 T 17-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VI35_11205 ec1575be77748b33b09ae17704fe5884 397 PRINTS PR00166 Aromatic amino acid permease signature 332 351 2.3E-74 T 17-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VI35_11205 ec1575be77748b33b09ae17704fe5884 397 PRINTS PR00166 Aromatic amino acid permease signature 219 238 2.3E-74 T 17-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VI35_11205 ec1575be77748b33b09ae17704fe5884 397 PRINTS PR00166 Aromatic amino acid permease signature 10 33 2.3E-74 T 17-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VI35_11205 ec1575be77748b33b09ae17704fe5884 397 PRINTS PR00166 Aromatic amino acid permease signature 37 56 2.3E-74 T 17-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VI35_11205 ec1575be77748b33b09ae17704fe5884 397 Gene3D G3DSA:1.20.1740.10 2 395 4.3E-14 T 17-10-2018 VI35_11205 ec1575be77748b33b09ae17704fe5884 397 TIGRFAM TIGR00837 araaP: aromatic amino acid transport protein 8 374 8.6E-107 T 17-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VI35_00705 fb4bd6fb2e9e9386f337da4c6546136d 371 Pfam PF08484 C-methyltransferase C-terminal domain 256 356 3.4E-6 T 17-10-2018 IPR013691 C-methyltransferase VI35_00705 fb4bd6fb2e9e9386f337da4c6546136d 371 Pfam PF13489 Methyltransferase domain 93 190 2.9E-10 T 17-10-2018 VI35_00705 fb4bd6fb2e9e9386f337da4c6546136d 371 SUPERFAMILY SSF53335 62 226 2.52E-24 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_00705 fb4bd6fb2e9e9386f337da4c6546136d 371 Gene3D G3DSA:3.40.50.150 56 232 6.3E-29 T 17-10-2018 VI35_13045 35a51a442b54d7c1c7e9f818f25b874d 192 SUPERFAMILY SSF53335 24 191 4.26E-33 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_13045 35a51a442b54d7c1c7e9f818f25b874d 192 Gene3D G3DSA:3.40.50.150 2 192 1.0E-44 T 17-10-2018 VI35_13045 35a51a442b54d7c1c7e9f818f25b874d 192 Pfam PF01596 O-methyltransferase 20 158 6.8E-20 T 17-10-2018 IPR002935 O-methyltransferase, family 3 GO:0008171 VI35_16205 3d4a8dbf4de4b33b7386820caa40dc4f 242 Gene3D G3DSA:3.40.50.880 1 228 2.9E-51 T 17-10-2018 IPR029062 Class I glutamine amidotransferase-like VI35_16205 3d4a8dbf4de4b33b7386820caa40dc4f 242 Pfam PF03575 Peptidase family S51 3 205 3.0E-44 T 17-10-2018 IPR005320 Peptidase S51 GO:0006508|GO:0008236 VI35_16205 3d4a8dbf4de4b33b7386820caa40dc4f 242 SUPERFAMILY SSF52317 1 210 2.37E-37 T 17-10-2018 IPR029062 Class I glutamine amidotransferase-like VI35_11155 4c3a7fd7b0c282505c106d540b6bdad9 228 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 137 153 5.4E-7 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_11155 4c3a7fd7b0c282505c106d540b6bdad9 228 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 155 175 5.4E-7 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_11155 4c3a7fd7b0c282505c106d540b6bdad9 228 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 9 20 5.4E-7 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_11155 4c3a7fd7b0c282505c106d540b6bdad9 228 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 106 119 5.4E-7 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_11155 4c3a7fd7b0c282505c106d540b6bdad9 228 SUPERFAMILY SSF56784 11 223 3.34E-53 T 17-10-2018 IPR036412 HAD-like superfamily VI35_11155 4c3a7fd7b0c282505c106d540b6bdad9 228 Gene3D G3DSA:3.40.50.1000 12 199 5.6E-51 T 17-10-2018 IPR023214 HAD superfamily VI35_11155 4c3a7fd7b0c282505c106d540b6bdad9 228 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 99 187 1.1E-9 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_11155 4c3a7fd7b0c282505c106d540b6bdad9 228 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 94 190 1.7E-8 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_11155 4c3a7fd7b0c282505c106d540b6bdad9 228 Pfam PF13419 Haloacid dehalogenase-like hydrolase 12 192 4.2E-30 T 17-10-2018 VI35_11155 4c3a7fd7b0c282505c106d540b6bdad9 228 Gene3D G3DSA:1.10.150.240 24 92 5.6E-51 T 17-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 VI35_14035 617d27c16e6a9198c37a3216c93ad45b 337 Pfam PF02885 Glycosyl transferase family, helical bundle domain 5 63 1.7E-16 T 17-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 VI35_14035 617d27c16e6a9198c37a3216c93ad45b 337 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 5 326 1.1E-124 T 17-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 VI35_14035 617d27c16e6a9198c37a3216c93ad45b 337 Pfam PF00591 Glycosyl transferase family, a/b domain 73 322 4.4E-99 T 17-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 VI35_14035 617d27c16e6a9198c37a3216c93ad45b 337 Gene3D G3DSA:3.40.1030.10 69 336 3.6E-101 T 17-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 VI35_14035 617d27c16e6a9198c37a3216c93ad45b 337 Gene3D G3DSA:1.20.970.10 3 66 1.2E-19 T 17-10-2018 VI35_14035 617d27c16e6a9198c37a3216c93ad45b 337 SUPERFAMILY SSF47648 1 65 1.13E-16 T 17-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 VI35_14035 617d27c16e6a9198c37a3216c93ad45b 337 SUPERFAMILY SSF52418 70 326 1.31E-91 T 17-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 VI35_14035 617d27c16e6a9198c37a3216c93ad45b 337 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 3 332 37.656 T 17-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 VI35_05500 9a37d063c32c32ca312df5970e5e3088 610 Gene3D G3DSA:3.30.70.1450 324 396 4.8E-16 T 17-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VI35_05500 9a37d063c32c32ca312df5970e5e3088 610 Gene3D G3DSA:3.30.70.1450 229 306 3.5E-12 T 17-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VI35_05500 9a37d063c32c32ca312df5970e5e3088 610 Pfam PF03600 Citrate transporter 16 555 1.8E-57 T 17-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 VI35_05500 9a37d063c32c32ca312df5970e5e3088 610 ProSitePatterns PS01271 Sodium:sulfate symporter family signature. 558 574 - T 17-10-2018 IPR031312 Sodium/sulphate symporter, conserved site Reactome: R-HSA-433137 VI35_05500 9a37d063c32c32ca312df5970e5e3088 610 SUPERFAMILY SSF116726 232 289 1.29E-8 T 17-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VI35_05500 9a37d063c32c32ca312df5970e5e3088 610 SUPERFAMILY SSF116726 321 393 1.44E-17 T 17-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VI35_05500 9a37d063c32c32ca312df5970e5e3088 610 Pfam PF02080 TrkA-C domain 231 297 7.8E-14 T 17-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 VI35_05500 9a37d063c32c32ca312df5970e5e3088 610 Pfam PF02080 TrkA-C domain 326 392 7.4E-12 T 17-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 VI35_01895 76e51a294cf7fefdcad5d4e6aa6bbaa1 120 TIGRFAM TIGR03582 EF_0829: PRD domain protein, EF_0829/AHA_3910 family 3 111 1.4E-43 T 17-10-2018 IPR020044 PRD domain protein, EF0829/AHA3910 VI35_01895 76e51a294cf7fefdcad5d4e6aa6bbaa1 120 Gene3D G3DSA:1.10.1790.10 13 112 5.3E-33 T 17-10-2018 VI35_01895 76e51a294cf7fefdcad5d4e6aa6bbaa1 120 SUPERFAMILY SSF63520 22 111 7.06E-7 T 17-10-2018 IPR036634 PRD domain superfamily GO:0006355 VI35_10775 f95eeb75b99a27851771777f69aee1b6 167 Gene3D G3DSA:3.30.530.20 1 151 1.5E-32 T 17-10-2018 IPR023393 START-like domain superfamily VI35_10775 f95eeb75b99a27851771777f69aee1b6 167 SUPERFAMILY SSF55961 1 147 5.76E-22 T 17-10-2018 VI35_10775 f95eeb75b99a27851771777f69aee1b6 167 PIRSF PIRSF039033 1 162 5.4E-46 T 17-10-2018 IPR028347 START domain-containing protein VI35_10665 99bc7e2447f50f817b0812960b3a3047 1304 Pfam PF00271 Helicase conserved C-terminal domain 288 405 2.9E-11 T 17-10-2018 IPR001650 Helicase, C-terminal VI35_10665 99bc7e2447f50f817b0812960b3a3047 1304 SMART SM00382 87 372 6.4E-6 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_10665 99bc7e2447f50f817b0812960b3a3047 1304 Pfam PF11898 Domain of unknown function (DUF3418) 718 1302 3.7E-235 T 17-10-2018 IPR024590 RNA helicase HrpA, C-terminal VI35_10665 99bc7e2447f50f817b0812960b3a3047 1304 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 10 1302 0.0 T 17-10-2018 IPR010222 RNA helicase HrpA GO:0004004 VI35_10665 99bc7e2447f50f817b0812960b3a3047 1304 Pfam PF00270 DEAD/DEAH box helicase 78 228 6.8E-9 T 17-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VI35_10665 99bc7e2447f50f817b0812960b3a3047 1304 Pfam PF04408 Helicase associated domain (HA2) 469 563 1.6E-15 T 17-10-2018 IPR007502 Helicase-associated domain GO:0004386 VI35_10665 99bc7e2447f50f817b0812960b3a3047 1304 Gene3D G3DSA:3.40.50.300 248 423 6.2E-55 T 17-10-2018 VI35_10665 99bc7e2447f50f817b0812960b3a3047 1304 Gene3D G3DSA:3.40.50.300 39 247 1.4E-76 T 17-10-2018 VI35_10665 99bc7e2447f50f817b0812960b3a3047 1304 Gene3D G3DSA:1.20.120.1080 449 559 2.3E-16 T 17-10-2018 VI35_10665 99bc7e2447f50f817b0812960b3a3047 1304 SMART SM00847 466 565 5.1E-34 T 17-10-2018 IPR007502 Helicase-associated domain GO:0004386 VI35_10665 99bc7e2447f50f817b0812960b3a3047 1304 SMART SM00490 306 406 1.4E-15 T 17-10-2018 IPR001650 Helicase, C-terminal VI35_10665 99bc7e2447f50f817b0812960b3a3047 1304 SMART SM00487 70 254 1.5E-31 T 17-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VI35_10665 99bc7e2447f50f817b0812960b3a3047 1304 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 629 705 4.9E-19 T 17-10-2018 IPR011709 Domain of unknown function DUF1605 VI35_10665 99bc7e2447f50f817b0812960b3a3047 1304 SUPERFAMILY SSF52540 69 573 1.91E-111 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_09570 d3a9fdba0b0f84a591c68d7e420232a6 72 Gene3D G3DSA:2.40.50.140 1 65 3.2E-26 T 17-10-2018 VI35_09570 d3a9fdba0b0f84a591c68d7e420232a6 72 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 3.0E-28 T 17-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VI35_09570 d3a9fdba0b0f84a591c68d7e420232a6 72 SUPERFAMILY SSF50249 1 64 7.07E-23 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_09570 d3a9fdba0b0f84a591c68d7e420232a6 72 PRINTS PR00050 Cold shock protein signature 4 19 2.1E-15 T 17-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VI35_09570 d3a9fdba0b0f84a591c68d7e420232a6 72 PRINTS PR00050 Cold shock protein signature 25 34 2.1E-15 T 17-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VI35_09570 d3a9fdba0b0f84a591c68d7e420232a6 72 PRINTS PR00050 Cold shock protein signature 40 58 2.1E-15 T 17-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VI35_09570 d3a9fdba0b0f84a591c68d7e420232a6 72 SMART SM00357 3 67 2.3E-26 T 17-10-2018 IPR011129 Cold shock domain GO:0003676 VI35_09570 d3a9fdba0b0f84a591c68d7e420232a6 72 PIRSF PIRSF002599 1 72 6.9E-23 T 17-10-2018 IPR012156 Cold shock, CspA GO:0003676 VI35_09570 d3a9fdba0b0f84a591c68d7e420232a6 72 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 17-10-2018 IPR019844 Cold-shock conserved site VI35_09570 d3a9fdba0b0f84a591c68d7e420232a6 72 TIGRFAM TIGR02381 cspD: cold shock domain protein CspD 1 66 2.2E-40 T 17-10-2018 IPR012751 CspD, cold shock GO:0003676|GO:0005737|GO:0006355 VI35_16135 87cf6cd570033f46ae929e38df1add78 234 Pfam PF01810 LysE type translocator 46 234 6.1E-32 T 17-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VI35_16135 87cf6cd570033f46ae929e38df1add78 234 PIRSF PIRSF006324 31 234 2.5E-45 T 17-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VI35_05600 519f136c3b7ac70105ec9e52bf1c5332 284 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 18 275 9.4E-119 T 17-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 VI35_05600 519f136c3b7ac70105ec9e52bf1c5332 284 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 13 277 49.617 T 17-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 VI35_05600 519f136c3b7ac70105ec9e52bf1c5332 284 Gene3D G3DSA:3.20.20.70 2 283 2.6E-99 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_05600 519f136c3b7ac70105ec9e52bf1c5332 284 SUPERFAMILY SSF51569 3 278 2.11E-104 T 17-10-2018 VI35_05600 519f136c3b7ac70105ec9e52bf1c5332 284 Pfam PF00793 DAHP synthetase I family 9 274 7.6E-69 T 17-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 VI35_08295 a3413bc2d46388f32df317e4e8d3227c 570 Gene3D G3DSA:1.20.140.10 269 421 1.1E-12 T 17-10-2018 VI35_08295 a3413bc2d46388f32df317e4e8d3227c 570 SUPERFAMILY SSF56645 73 239 6.06E-15 T 17-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 VI35_08295 a3413bc2d46388f32df317e4e8d3227c 570 SUPERFAMILY SSF47203 263 426 3.06E-16 T 17-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 VI35_08295 a3413bc2d46388f32df317e4e8d3227c 570 Gene3D G3DSA:2.40.110.10 116 256 1.6E-30 T 17-10-2018 VI35_00485 e0c4496e5c0126a3bcef972e2fd1bad3 524 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 171 185 8.8E-21 T 17-10-2018 VI35_00485 e0c4496e5c0126a3bcef972e2fd1bad3 524 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 257 269 8.8E-21 T 17-10-2018 VI35_00485 e0c4496e5c0126a3bcef972e2fd1bad3 524 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 147 163 8.8E-21 T 17-10-2018 VI35_00485 e0c4496e5c0126a3bcef972e2fd1bad3 524 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 287 311 8.8E-21 T 17-10-2018 VI35_00485 e0c4496e5c0126a3bcef972e2fd1bad3 524 Gene3D G3DSA:1.20.1260.30 1 149 1.8E-48 T 17-10-2018 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily VI35_00485 e0c4496e5c0126a3bcef972e2fd1bad3 524 Gene3D G3DSA:3.40.50.150 150 485 1.3E-79 T 17-10-2018 VI35_00485 e0c4496e5c0126a3bcef972e2fd1bad3 524 Pfam PF12161 HsdM N-terminal domain 7 113 1.0E-14 T 17-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain VI35_00485 e0c4496e5c0126a3bcef972e2fd1bad3 524 Pfam PF02384 N-6 DNA Methylase 123 419 4.1E-74 T 17-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 VI35_00485 e0c4496e5c0126a3bcef972e2fd1bad3 524 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 260 266 - T 17-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 VI35_00485 e0c4496e5c0126a3bcef972e2fd1bad3 524 SUPERFAMILY SSF53335 4 521 3.22E-126 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_16970 dcf752c3b4c34e708db05dbd7735fd47 447 Pfam PF00970 Oxidoreductase FAD-binding domain 250 329 3.4E-5 T 17-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 VI35_16970 dcf752c3b4c34e708db05dbd7735fd47 447 Pfam PF01794 Ferric reductase like transmembrane component 46 190 4.2E-13 T 17-10-2018 IPR013130 Ferric reductase transmembrane component-like domain VI35_16970 dcf752c3b4c34e708db05dbd7735fd47 447 SUPERFAMILY SSF52343 319 433 4.58E-19 T 17-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VI35_16970 dcf752c3b4c34e708db05dbd7735fd47 447 SUPERFAMILY SSF63380 239 329 3.58E-20 T 17-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VI35_16970 dcf752c3b4c34e708db05dbd7735fd47 447 Gene3D G3DSA:3.40.50.80 332 444 1.1E-15 T 17-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VI35_16970 dcf752c3b4c34e708db05dbd7735fd47 447 Gene3D G3DSA:2.40.30.10 231 327 1.3E-17 T 17-10-2018 VI35_04420 cf819c6af6e97f2cef61adb2c142ea30 155 Pfam PF00156 Phosphoribosyl transferase domain 15 147 2.1E-13 T 17-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 VI35_04420 cf819c6af6e97f2cef61adb2c142ea30 155 Gene3D G3DSA:3.40.50.2020 1 154 2.5E-39 T 17-10-2018 VI35_04420 cf819c6af6e97f2cef61adb2c142ea30 155 Hamap MF_01903 Xanthine phosphoribosyltransferase [gpt]. 1 155 40.438 T 17-10-2018 IPR023747 Xanthine-guanine phosphoribosyltransferase GO:0000310 KEGG: 00230+2.4.2.22 VI35_04420 cf819c6af6e97f2cef61adb2c142ea30 155 SUPERFAMILY SSF53271 3 144 5.39E-28 T 17-10-2018 IPR029057 Phosphoribosyltransferase-like VI35_18900 5866b10c375ba89baff72dc5ffd6d1ec 204 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 90 1.2E-31 T 17-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VI35_18900 5866b10c375ba89baff72dc5ffd6d1ec 204 SUPERFAMILY SSF54719 93 202 1.57E-46 T 17-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VI35_18900 5866b10c375ba89baff72dc5ffd6d1ec 204 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 165 172 - T 17-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VI35_18900 5866b10c375ba89baff72dc5ffd6d1ec 204 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 97 198 5.9E-40 T 17-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VI35_18900 5866b10c375ba89baff72dc5ffd6d1ec 204 PRINTS PR01703 Manganese superoxide dismutase signature 163 175 3.4E-27 T 17-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VI35_18900 5866b10c375ba89baff72dc5ffd6d1ec 204 PRINTS PR01703 Manganese superoxide dismutase signature 73 86 3.4E-27 T 17-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VI35_18900 5866b10c375ba89baff72dc5ffd6d1ec 204 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 3.4E-27 T 17-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VI35_18900 5866b10c375ba89baff72dc5ffd6d1ec 204 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 3.4E-27 T 17-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VI35_18900 5866b10c375ba89baff72dc5ffd6d1ec 204 PRINTS PR01703 Manganese superoxide dismutase signature 126 134 3.4E-27 T 17-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VI35_18900 5866b10c375ba89baff72dc5ffd6d1ec 204 PIRSF PIRSF000349 1 204 2.0E-82 T 17-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VI35_18900 5866b10c375ba89baff72dc5ffd6d1ec 204 SUPERFAMILY SSF46609 1 91 6.02E-37 T 17-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VI35_18900 5866b10c375ba89baff72dc5ffd6d1ec 204 Gene3D G3DSA:1.10.287.990 20 90 3.7E-30 T 17-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VI35_18900 5866b10c375ba89baff72dc5ffd6d1ec 204 Gene3D G3DSA:2.40.500.20 91 204 1.7E-47 T 17-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VI35_15775 3a2bf7d15c92c4d8483674e5bcac8c47 160 Pfam PF04461 Protein of unknown function (DUF520) 2 159 3.7E-64 T 17-10-2018 IPR007551 Protein of unknown function DUF520 VI35_15775 3a2bf7d15c92c4d8483674e5bcac8c47 160 SUPERFAMILY SSF89963 2 86 2.43E-29 T 17-10-2018 IPR036183 YajQ-like superfamily VI35_15775 3a2bf7d15c92c4d8483674e5bcac8c47 160 SUPERFAMILY SSF89963 88 160 1.44E-30 T 17-10-2018 IPR036183 YajQ-like superfamily VI35_15775 3a2bf7d15c92c4d8483674e5bcac8c47 160 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 1 160 29.448 T 17-10-2018 IPR007551 Protein of unknown function DUF520 VI35_15775 3a2bf7d15c92c4d8483674e5bcac8c47 160 Gene3D G3DSA:3.30.70.860 95 160 1.3E-31 T 17-10-2018 IPR035571 UPF0234-like, C-terminal VI35_15775 3a2bf7d15c92c4d8483674e5bcac8c47 160 Gene3D G3DSA:3.30.70.990 9 94 4.1E-27 T 17-10-2018 IPR035570 UPF0234, N-terminal VI35_07335 639c169da2c997b64c817a88638fd625 280 Pfam PF13353 4Fe-4S single cluster domain 49 174 7.0E-21 T 17-10-2018 VI35_07335 639c169da2c997b64c817a88638fd625 280 PIRSF PIRSF000371 75 275 2.0E-41 T 17-10-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 VI35_07335 639c169da2c997b64c817a88638fd625 280 PIRSF PIRSF000371 29 80 1.2E-11 T 17-10-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 VI35_07335 639c169da2c997b64c817a88638fd625 280 Gene3D G3DSA:3.20.20.70 35 280 5.8E-97 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_07335 639c169da2c997b64c817a88638fd625 280 ProSitePatterns PS01087 Radical activating enzymes signature. 51 72 - T 17-10-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 VI35_07335 639c169da2c997b64c817a88638fd625 280 SUPERFAMILY SSF102114 56 251 1.67E-22 T 17-10-2018 VI35_07335 639c169da2c997b64c817a88638fd625 280 Pfam PF04055 Radical SAM superfamily 57 211 2.4E-25 T 17-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VI35_07335 639c169da2c997b64c817a88638fd625 280 TIGRFAM TIGR02493 PFLA: pyruvate formate-lyase 1-activating enzyme 39 272 1.2E-102 T 17-10-2018 IPR012838 Pyruvate formate-lyase 1 activating enzyme GO:0043365|GO:0055114 VI35_02990 c85a1626f2e8962db9293fbd03ccaf2d 145 SUPERFAMILY SSF52821 17 131 9.43E-24 T 17-10-2018 IPR036873 Rhodanese-like domain superfamily VI35_02990 c85a1626f2e8962db9293fbd03ccaf2d 145 SMART SM00450 29 126 8.4E-12 T 17-10-2018 IPR001763 Rhodanese-like domain VI35_02990 c85a1626f2e8962db9293fbd03ccaf2d 145 Gene3D G3DSA:3.40.250.10 11 128 7.7E-27 T 17-10-2018 IPR036873 Rhodanese-like domain superfamily VI35_02990 c85a1626f2e8962db9293fbd03ccaf2d 145 ProSitePatterns PS00380 Rhodanese signature 1. 54 65 - T 17-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 VI35_02990 c85a1626f2e8962db9293fbd03ccaf2d 145 Pfam PF00581 Rhodanese-like domain 35 122 2.3E-12 T 17-10-2018 IPR001763 Rhodanese-like domain VI35_01810 b296e70cf831d9a7602d49b97021aee2 184 SUPERFAMILY SSF56784 18 177 4.07E-41 T 17-10-2018 IPR036412 HAD-like superfamily VI35_01810 b296e70cf831d9a7602d49b97021aee2 184 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 22 174 3.9E-55 T 17-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 VI35_01810 b296e70cf831d9a7602d49b97021aee2 184 Pfam PF08282 haloacid dehalogenase-like hydrolase 101 154 2.8E-8 T 17-10-2018 VI35_01810 b296e70cf831d9a7602d49b97021aee2 184 Gene3D G3DSA:3.40.50.1000 2 180 1.7E-54 T 17-10-2018 IPR023214 HAD superfamily VI35_01810 b296e70cf831d9a7602d49b97021aee2 184 PIRSF PIRSF006118 9 183 2.0E-66 T 17-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 VI35_17735 08215b453b8f96f1807b027f9b0c5e60 247 SUPERFAMILY SSF63380 4 99 4.12E-20 T 17-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VI35_17735 08215b453b8f96f1807b027f9b0c5e60 247 Gene3D G3DSA:2.40.30.10 1 96 3.1E-26 T 17-10-2018 VI35_17735 08215b453b8f96f1807b027f9b0c5e60 247 Gene3D G3DSA:3.40.50.80 97 247 1.3E-37 T 17-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VI35_17735 08215b453b8f96f1807b027f9b0c5e60 247 SUPERFAMILY SSF52343 102 247 2.23E-32 T 17-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VI35_17735 08215b453b8f96f1807b027f9b0c5e60 247 Pfam PF00175 Oxidoreductase NAD-binding domain 111 222 7.7E-14 T 17-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 VI35_03820 d3c50ce195bc2cc003e25625492e8fb3 465 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 8 217 7.4E-59 T 17-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 VI35_03820 d3c50ce195bc2cc003e25625492e8fb3 465 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 230 439 3.9E-47 T 17-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 VI35_03820 d3c50ce195bc2cc003e25625492e8fb3 465 ProSitePatterns PS01022 PTR2 family proton/oligopeptide symporters signature 1. 75 99 - T 17-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 VI35_03820 d3c50ce195bc2cc003e25625492e8fb3 465 Pfam PF00854 POT family 233 411 3.1E-34 T 17-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 VI35_03820 d3c50ce195bc2cc003e25625492e8fb3 465 Pfam PF00854 POT family 87 199 8.4E-30 T 17-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 VI35_03820 d3c50ce195bc2cc003e25625492e8fb3 465 Gene3D G3DSA:1.20.1250.20 1 228 1.1E-73 T 17-10-2018 VI35_03820 d3c50ce195bc2cc003e25625492e8fb3 465 Gene3D G3DSA:1.20.1250.20 229 456 4.1E-59 T 17-10-2018 VI35_03820 d3c50ce195bc2cc003e25625492e8fb3 465 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 155 167 - T 17-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 VI35_03820 d3c50ce195bc2cc003e25625492e8fb3 465 SUPERFAMILY SSF103473 6 438 8.63E-42 T 17-10-2018 IPR036259 MFS transporter superfamily VI35_10240 f83fe53d3563053858ed77d1e0382c8c 67 PIRSF PIRSF037225 1 65 7.3E-24 T 17-10-2018 IPR017143 Uncharacterised conserved protein UCP037225 VI35_10240 f83fe53d3563053858ed77d1e0382c8c 67 Pfam PF14255 Cysteine-rich CPXCG 9 59 8.0E-22 T 17-10-2018 IPR025990 Cysteine-rich CPXCG protein VI35_17335 d3df8b5530067848161ab3df93d32704 368 Gene3D G3DSA:3.30.1150.10 269 367 7.3E-26 T 17-10-2018 VI35_17335 d3df8b5530067848161ab3df93d32704 368 TIGRFAM TIGR02794 tolA_full: protein TolA 11 366 8.3E-67 T 17-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 VI35_17335 d3df8b5530067848161ab3df93d32704 368 SUPERFAMILY SSF74653 279 365 1.39E-18 T 17-10-2018 VI35_17335 d3df8b5530067848161ab3df93d32704 368 Pfam PF06519 TolA C-terminal 271 363 2.2E-23 T 17-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 VI35_15280 a30e8a8f01f2f6f297fb7ff2692c9292 342 PIRSF PIRSF029594 8 342 1.5E-143 T 17-10-2018 IPR016926 Uncharacterised conserved protein UCP029594 VI35_15280 a30e8a8f01f2f6f297fb7ff2692c9292 342 Pfam PF11168 Protein of unknown function (DUF2955) 15 154 8.9E-53 T 17-10-2018 IPR022604 Protein of unknown function DUF2955 VI35_13260 b3097e61b070fc807002fc3431cd3bae 165 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 36 53 - T 17-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 VI35_13260 b3097e61b070fc807002fc3431cd3bae 165 SUPERFAMILY SSF50891 1 163 7.89E-57 T 17-10-2018 IPR029000 Cyclophilin-like domain superfamily VI35_13260 b3097e61b070fc807002fc3431cd3bae 165 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 1 162 9.0E-48 T 17-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 VI35_13260 b3097e61b070fc807002fc3431cd3bae 165 Gene3D G3DSA:2.40.100.10 1 164 2.1E-64 T 17-10-2018 IPR029000 Cyclophilin-like domain superfamily VI35_13260 b3097e61b070fc807002fc3431cd3bae 165 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 41 53 4.1E-11 T 17-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 VI35_13260 b3097e61b070fc807002fc3431cd3bae 165 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 15 30 4.1E-11 T 17-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 VI35_13260 b3097e61b070fc807002fc3431cd3bae 165 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 133 4.1E-11 T 17-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 VI35_13260 b3097e61b070fc807002fc3431cd3bae 165 PIRSF PIRSF001467 1 163 2.5E-27 T 17-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 VI35_04670 02aa456fcf7e859d0388b0db6f7a9e6d 282 Pfam PF03466 LysR substrate binding domain 82 279 5.8E-46 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_04670 02aa456fcf7e859d0388b0db6f7a9e6d 282 Gene3D G3DSA:3.40.190.290 85 278 3.8E-59 T 17-10-2018 VI35_04670 02aa456fcf7e859d0388b0db6f7a9e6d 282 SUPERFAMILY SSF46785 3 79 8.35E-21 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_04670 02aa456fcf7e859d0388b0db6f7a9e6d 282 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 57 3.3E-20 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_04670 02aa456fcf7e859d0388b0db6f7a9e6d 282 SUPERFAMILY SSF53850 84 279 8.87E-46 T 17-10-2018 VI35_04670 02aa456fcf7e859d0388b0db6f7a9e6d 282 Gene3D G3DSA:1.10.10.10 1 82 1.1E-26 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_04670 02aa456fcf7e859d0388b0db6f7a9e6d 282 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 13 24 7.8E-5 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_04670 02aa456fcf7e859d0388b0db6f7a9e6d 282 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 34 7.8E-5 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_04670 02aa456fcf7e859d0388b0db6f7a9e6d 282 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 45 7.8E-5 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_15785 4a268dce2424b6c713f5657e8d3cd2d4 191 Gene3D G3DSA:3.40.50.880 1 189 1.3E-50 T 17-10-2018 IPR029062 Class I glutamine amidotransferase-like VI35_15785 4a268dce2424b6c713f5657e8d3cd2d4 191 TIGRFAM TIGR01383 not_thiJ: DJ-1 family protein 3 181 2.7E-56 T 17-10-2018 IPR006287 Protein/nucleic acid deglycase DJ-1 Reactome: R-HSA-3899300 VI35_15785 4a268dce2424b6c713f5657e8d3cd2d4 191 SUPERFAMILY SSF52317 1 187 6.42E-47 T 17-10-2018 IPR029062 Class I glutamine amidotransferase-like VI35_15785 4a268dce2424b6c713f5657e8d3cd2d4 191 Pfam PF01965 DJ-1/PfpI family 1 168 2.8E-39 T 17-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 VI35_15490 80f7636f2eb8abb6011eb0305be0d5f7 153 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 8 152 35.988 T 17-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VI35_15490 80f7636f2eb8abb6011eb0305be0d5f7 153 Gene3D G3DSA:3.10.129.10 5 151 2.1E-60 T 17-10-2018 VI35_15490 80f7636f2eb8abb6011eb0305be0d5f7 153 SUPERFAMILY SSF54637 8 149 3.74E-48 T 17-10-2018 IPR029069 HotDog domain superfamily VI35_15490 80f7636f2eb8abb6011eb0305be0d5f7 153 Pfam PF07977 FabA-like domain 17 145 6.9E-38 T 17-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VI35_15490 80f7636f2eb8abb6011eb0305be0d5f7 153 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 9 149 6.0E-59 T 17-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VI35_10765 3f5381f2da736300a0500cf39314c378 327 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 152 166 - T 17-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_10765 3f5381f2da736300a0500cf39314c378 327 Gene3D G3DSA:3.10.290.10 19 85 2.7E-17 T 17-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 VI35_10765 3f5381f2da736300a0500cf39314c378 327 Gene3D G3DSA:3.30.2350.10 105 327 3.8E-85 T 17-10-2018 VI35_10765 3f5381f2da736300a0500cf39314c378 327 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 29 325 7.3E-94 T 17-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_10765 3f5381f2da736300a0500cf39314c378 327 Pfam PF00849 RNA pseudouridylate synthase 114 262 4.1E-33 T 17-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_10765 3f5381f2da736300a0500cf39314c378 327 SUPERFAMILY SSF55174 32 83 5.0E-9 T 17-10-2018 VI35_10765 3f5381f2da736300a0500cf39314c378 327 SUPERFAMILY SSF55120 106 324 4.16E-66 T 17-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_10765 3f5381f2da736300a0500cf39314c378 327 Pfam PF01479 S4 domain 33 79 2.5E-10 T 17-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_10765 3f5381f2da736300a0500cf39314c378 327 SMART SM00363 33 92 1.6E-9 T 17-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_17775 461fd487df829baaa1ee8a0bad538885 187 Gene3D G3DSA:2.60.120.10 11 134 7.2E-15 T 17-10-2018 IPR014710 RmlC-like jelly roll fold VI35_17775 461fd487df829baaa1ee8a0bad538885 187 Pfam PF00027 Cyclic nucleotide-binding domain 29 112 9.9E-8 T 17-10-2018 IPR000595 Cyclic nucleotide-binding domain VI35_17775 461fd487df829baaa1ee8a0bad538885 187 SUPERFAMILY SSF51206 14 127 3.01E-16 T 17-10-2018 IPR018490 Cyclic nucleotide-binding-like VI35_04685 bbb9869af491e2407ee8fbb8ef699fb9 82 ProDom PD745092 MEMBRANE YHDT SODIUM/PANTOTHENATE TRANSMEMBRANE INNER SYMPORTER Y0210 INTEGRAL PROTEIN-LIKE PM1090 2 76 3.0E-8 T 17-10-2018 IPR010398 Protein of unknown function DUF997 VI35_04685 bbb9869af491e2407ee8fbb8ef699fb9 82 Pfam PF06196 Protein of unknown function (DUF997) 7 76 6.0E-23 T 17-10-2018 IPR010398 Protein of unknown function DUF997 VI35_01820 c16e79683e56da39dd3c43c116fb0adb 172 Pfam PF03968 OstA-like protein 29 139 1.7E-26 T 17-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal VI35_01820 c16e79683e56da39dd3c43c116fb0adb 172 Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. 1 159 20.643 T 17-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 VI35_01820 c16e79683e56da39dd3c43c116fb0adb 172 Gene3D G3DSA:2.60.450.10 19 156 1.4E-37 T 17-10-2018 VI35_01820 c16e79683e56da39dd3c43c116fb0adb 172 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 19 158 9.6E-45 T 17-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 VI35_00835 ed6bc8c7cbcf45a08c78f99b1553b0d9 161 TIGRFAM TIGR02998 RraA_entero: regulator of ribonuclease activity A 1 161 4.5E-83 T 17-10-2018 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria GO:0008428|GO:0051252 VI35_00835 ed6bc8c7cbcf45a08c78f99b1553b0d9 161 SUPERFAMILY SSF89562 2 159 2.22E-43 T 17-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily VI35_00835 ed6bc8c7cbcf45a08c78f99b1553b0d9 161 Pfam PF03737 Aldolase/RraA 6 152 8.3E-35 T 17-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein VI35_00835 ed6bc8c7cbcf45a08c78f99b1553b0d9 161 Hamap MF_00471 Regulator of ribonuclease activity A [rraA]. 1 161 46.204 T 17-10-2018 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria GO:0008428|GO:0051252 VI35_00835 ed6bc8c7cbcf45a08c78f99b1553b0d9 161 TIGRFAM TIGR01935 NOT-MenG: RraA family 5 154 2.5E-62 T 17-10-2018 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 VI35_00835 ed6bc8c7cbcf45a08c78f99b1553b0d9 161 Gene3D G3DSA:3.50.30.40 1 161 1.8E-56 T 17-10-2018 VI35_09180 a7edbc67dffd4193a126b6f50a1bdf6e 205 Gene3D G3DSA:1.10.357.10 15 204 4.2E-28 T 17-10-2018 VI35_09180 a7edbc67dffd4193a126b6f50a1bdf6e 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 65 6.9E-12 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_09180 a7edbc67dffd4193a126b6f50a1bdf6e 205 SUPERFAMILY SSF46689 10 95 2.41E-15 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_09180 a7edbc67dffd4193a126b6f50a1bdf6e 205 SUPERFAMILY SSF48498 91 204 1.2E-9 T 17-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VI35_09180 a7edbc67dffd4193a126b6f50a1bdf6e 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 44 67 9.0E-5 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_09180 a7edbc67dffd4193a126b6f50a1bdf6e 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 23 36 9.0E-5 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_06170 fbdd479fae61c69293615c7ac0ff33bf 487 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 203 461 5.3E-66 T 17-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 VI35_06170 fbdd479fae61c69293615c7ac0ff33bf 487 Gene3D G3DSA:1.10.1040.10 276 486 1.7E-60 T 17-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 VI35_06170 fbdd479fae61c69293615c7ac0ff33bf 487 SUPERFAMILY SSF48179 277 485 2.04E-48 T 17-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VI35_06170 fbdd479fae61c69293615c7ac0ff33bf 487 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 17 172 5.0E-30 T 17-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 VI35_06170 fbdd479fae61c69293615c7ac0ff33bf 487 SUPERFAMILY SSF51735 2 256 1.06E-66 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_06170 fbdd479fae61c69293615c7ac0ff33bf 487 Gene3D G3DSA:3.40.50.720 2 260 1.9E-52 T 17-10-2018 VI35_02515 b871ec82e76f285a5ca545f16e09d644 315 Gene3D G3DSA:3.40.50.2300 68 301 7.5E-64 T 17-10-2018 VI35_02515 b871ec82e76f285a5ca545f16e09d644 315 SMART SM00354 4 74 1.3E-27 T 17-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VI35_02515 b871ec82e76f285a5ca545f16e09d644 315 Gene3D G3DSA:3.40.50.2300 163 279 7.5E-64 T 17-10-2018 VI35_02515 b871ec82e76f285a5ca545f16e09d644 315 TIGRFAM TIGR02405 trehalos_R_Ecol: trehalose operon repressor 4 306 4.3E-128 T 17-10-2018 IPR012771 Trehalose operon repressor GO:0003677|GO:0005991|GO:0045892 VI35_02515 b871ec82e76f285a5ca545f16e09d644 315 SUPERFAMILY SSF53822 63 311 2.36E-56 T 17-10-2018 IPR028082 Periplasmic binding protein-like I VI35_02515 b871ec82e76f285a5ca545f16e09d644 315 SUPERFAMILY SSF47413 3 61 3.75E-15 T 17-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VI35_02515 b871ec82e76f285a5ca545f16e09d644 315 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 63 258 3.9E-15 T 17-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain VI35_02515 b871ec82e76f285a5ca545f16e09d644 315 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 16 26 4.2E-5 T 17-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VI35_02515 b871ec82e76f285a5ca545f16e09d644 315 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 6 16 4.2E-5 T 17-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VI35_02515 b871ec82e76f285a5ca545f16e09d644 315 ProSitePatterns PS00356 LacI-type HTH domain signature. 7 25 - T 17-10-2018 VI35_02515 b871ec82e76f285a5ca545f16e09d644 315 Gene3D G3DSA:1.10.260.40 2 62 3.1E-19 T 17-10-2018 VI35_02515 b871ec82e76f285a5ca545f16e09d644 315 Pfam PF00356 Bacterial regulatory proteins, lacI family 6 51 3.1E-17 T 17-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VI35_14695 c143672c3252844442a1869883e0c609 280 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 29 175 1.5E-13 T 17-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VI35_14695 c143672c3252844442a1869883e0c609 280 SUPERFAMILY SSF52540 14 263 5.23E-37 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_14695 c143672c3252844442a1869883e0c609 280 Gene3D G3DSA:3.40.50.300 5 205 1.3E-27 T 17-10-2018 VI35_14695 c143672c3252844442a1869883e0c609 280 SMART SM00382 25 183 1.1E-7 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_21105 0489b6fd30fdc7e8660dce675e156109 453 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 392 426 1.2E-6 T 17-10-2018 IPR001451 Hexapeptide repeat VI35_21105 0489b6fd30fdc7e8660dce675e156109 453 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 263 296 5.0E-6 T 17-10-2018 IPR001451 Hexapeptide repeat VI35_21105 0489b6fd30fdc7e8660dce675e156109 453 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 400 428 - T 17-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 VI35_21105 0489b6fd30fdc7e8660dce675e156109 453 SUPERFAMILY SSF53448 1 249 1.04E-64 T 17-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VI35_21105 0489b6fd30fdc7e8660dce675e156109 453 SUPERFAMILY SSF51161 251 435 4.48E-49 T 17-10-2018 IPR011004 Trimeric LpxA-like superfamily VI35_21105 0489b6fd30fdc7e8660dce675e156109 453 Pfam PF12804 MobA-like NTP transferase domain 5 129 7.6E-24 T 17-10-2018 IPR025877 MobA-like NTP transferase VI35_21105 0489b6fd30fdc7e8660dce675e156109 453 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 271 299 - T 17-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 VI35_21105 0489b6fd30fdc7e8660dce675e156109 453 Gene3D G3DSA:3.90.550.10 2 224 1.4E-66 T 17-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VI35_21105 0489b6fd30fdc7e8660dce675e156109 453 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 4 451 4.5E-198 T 17-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 VI35_21105 0489b6fd30fdc7e8660dce675e156109 453 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 2 449 42.392 T 17-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 VI35_21105 0489b6fd30fdc7e8660dce675e156109 453 Gene3D G3DSA:2.160.10.10 225 453 1.4E-69 T 17-10-2018 VI35_00790 be68c7eeb61b89c088a206d04e6eb482 241 Pfam PF03473 MOSC domain 48 163 3.5E-20 T 17-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 VI35_00790 be68c7eeb61b89c088a206d04e6eb482 241 Pfam PF03475 3-alpha domain 178 220 1.2E-11 T 17-10-2018 IPR005163 3-alpha domain VI35_00790 be68c7eeb61b89c088a206d04e6eb482 241 SUPERFAMILY SSF50800 5 232 3.19E-68 T 17-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily VI35_00790 be68c7eeb61b89c088a206d04e6eb482 241 Gene3D G3DSA:2.40.33.20 1 237 1.1E-73 T 17-10-2018 VI35_17140 049dcdd96041777b14aaa80c5fd4ac11 437 ProSitePatterns PS00610 Sodium:neurotransmitter symporter family signature 1. 27 41 - T 17-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VI35_17140 049dcdd96041777b14aaa80c5fd4ac11 437 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 417 437 2.7E-14 T 17-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VI35_17140 049dcdd96041777b14aaa80c5fd4ac11 437 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 85 111 2.7E-14 T 17-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VI35_17140 049dcdd96041777b14aaa80c5fd4ac11 437 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 11 32 2.7E-14 T 17-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VI35_17140 049dcdd96041777b14aaa80c5fd4ac11 437 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 40 59 2.7E-14 T 17-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VI35_17140 049dcdd96041777b14aaa80c5fd4ac11 437 Pfam PF00209 Sodium:neurotransmitter symporter family 136 434 4.4E-28 T 17-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VI35_17140 049dcdd96041777b14aaa80c5fd4ac11 437 Pfam PF00209 Sodium:neurotransmitter symporter family 4 120 8.9E-23 T 17-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VI35_17140 049dcdd96041777b14aaa80c5fd4ac11 437 SUPERFAMILY SSF161070 4 436 6.54E-121 T 17-10-2018 IPR037272 Sodium:neurotransmitter symporter superfamily GO:0005328 VI35_14150 60d2d686808a198a6cdb9ea9ddf76820 147 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 33 78 3.2E-16 T 17-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 VI35_14150 60d2d686808a198a6cdb9ea9ddf76820 147 SUPERFAMILY SSF69118 6 145 4.11E-39 T 17-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 VI35_14150 60d2d686808a198a6cdb9ea9ddf76820 147 Pfam PF02627 Carboxymuconolactone decarboxylase family 11 93 1.7E-18 T 17-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 VI35_14150 60d2d686808a198a6cdb9ea9ddf76820 147 Gene3D G3DSA:1.20.1290.10 1 147 2.9E-43 T 17-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 VI35_15580 56aab9addbd83d450b1a0d7cfd37a015 440 Pfam PF02264 LamB porin 26 440 1.3E-122 T 17-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 VI35_15580 56aab9addbd83d450b1a0d7cfd37a015 440 Gene3D G3DSA:2.40.170.10 24 440 9.5E-137 T 17-10-2018 IPR036998 Porin, LamB-type superfamily GO:0015288|GO:0016020|GO:0034219 VI35_15580 56aab9addbd83d450b1a0d7cfd37a015 440 ProDom PD008788 PORIN MEMBRANE PRECURSOR SIGNAL MALTOPORIN OUTER ION TRANSMEMBRANE RECEPTOR LAMB 42 435 4.0E-162 T 17-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 VI35_15580 56aab9addbd83d450b1a0d7cfd37a015 440 SUPERFAMILY SSF56935 24 440 2.26E-127 T 17-10-2018 VI35_15580 56aab9addbd83d450b1a0d7cfd37a015 440 Hamap MF_01301 Maltoporin [lamB]. 2 440 49.275 T 17-10-2018 IPR023738 Maltoporin GO:0009279|GO:0015481|GO:0015768|GO:0042956|GO:0042958 VI35_20765 8457d62a0ae35ef0c9680d665a0f35df 307 SUPERFAMILY SSF55681 8 292 1.09E-133 T 17-10-2018 VI35_20765 8457d62a0ae35ef0c9680d665a0f35df 307 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 7 293 62.744 T 17-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VI35_20765 8457d62a0ae35ef0c9680d665a0f35df 307 Gene3D G3DSA:1.20.58.180 215 297 7.2E-34 T 17-10-2018 VI35_20765 8457d62a0ae35ef0c9680d665a0f35df 307 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 7 300 5.8E-176 T 17-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VI35_20765 8457d62a0ae35ef0c9680d665a0f35df 307 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 139 159 4.1E-71 T 17-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VI35_20765 8457d62a0ae35ef0c9680d665a0f35df 307 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 113 137 4.1E-71 T 17-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VI35_20765 8457d62a0ae35ef0c9680d665a0f35df 307 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 253 269 4.1E-71 T 17-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VI35_20765 8457d62a0ae35ef0c9680d665a0f35df 307 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 61 76 4.1E-71 T 17-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VI35_20765 8457d62a0ae35ef0c9680d665a0f35df 307 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 82 102 4.1E-71 T 17-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VI35_20765 8457d62a0ae35ef0c9680d665a0f35df 307 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 162 177 4.1E-71 T 17-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VI35_20765 8457d62a0ae35ef0c9680d665a0f35df 307 Gene3D G3DSA:3.30.930.10 1 214 3.3E-111 T 17-10-2018 VI35_20765 8457d62a0ae35ef0c9680d665a0f35df 307 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 9 292 1.3E-150 T 17-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VI35_05300 05dc8bada1c6bcb73469a9d32eaad053 625 Gene3D G3DSA:1.10.287.950 296 625 2.3E-72 T 17-10-2018 VI35_05300 05dc8bada1c6bcb73469a9d32eaad053 625 Pfam PF00672 HAMP domain 297 344 3.5E-6 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_05300 05dc8bada1c6bcb73469a9d32eaad053 625 Gene3D G3DSA:3.30.450.20 64 168 7.1E-61 T 17-10-2018 VI35_05300 05dc8bada1c6bcb73469a9d32eaad053 625 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 408 591 1.3E-40 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_05300 05dc8bada1c6bcb73469a9d32eaad053 625 Pfam PF02743 Cache domain 54 256 7.7E-28 T 17-10-2018 IPR033479 Double Cache domain 1 VI35_05300 05dc8bada1c6bcb73469a9d32eaad053 625 SMART SM00304 294 348 5.9E-8 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_05300 05dc8bada1c6bcb73469a9d32eaad053 625 SUPERFAMILY SSF58104 316 625 9.29E-77 T 17-10-2018 VI35_05300 05dc8bada1c6bcb73469a9d32eaad053 625 Gene3D G3DSA:3.30.450.20 55 268 7.1E-61 T 17-10-2018 VI35_05300 05dc8bada1c6bcb73469a9d32eaad053 625 SMART SM00283 359 624 6.3E-67 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_05300 05dc8bada1c6bcb73469a9d32eaad053 625 SUPERFAMILY SSF103190 74 175 1.57E-16 T 17-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VI35_18710 c908544ffd8d8740ae757165b3918bbf 207 Pfam PF12535 Hydrolase of X-linked nucleoside diphosphate N terminal 6 57 1.5E-14 T 17-10-2018 VI35_18710 c908544ffd8d8740ae757165b3918bbf 207 Gene3D G3DSA:3.90.79.10 42 207 2.6E-38 T 17-10-2018 VI35_18710 c908544ffd8d8740ae757165b3918bbf 207 PRINTS PR00502 NUDIX hydrolase family signature 107 122 2.6E-5 T 17-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 VI35_18710 c908544ffd8d8740ae757165b3918bbf 207 PRINTS PR00502 NUDIX hydrolase family signature 93 107 2.6E-5 T 17-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 VI35_18710 c908544ffd8d8740ae757165b3918bbf 207 SUPERFAMILY SSF55811 63 197 2.57E-32 T 17-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VI35_18710 c908544ffd8d8740ae757165b3918bbf 207 Pfam PF00293 NUDIX domain 69 181 2.0E-19 T 17-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 VI35_00475 c368144bf59a1a41cbcda4e4633e4b21 118 Pfam PF04320 Protein with unknown function (DUF469) 12 113 1.5E-26 T 17-10-2018 IPR007416 Protein of unknown function DUF469 VI35_05470 c0127171c40de68cbbcf73008a0d8bfa 256 SUPERFAMILY SSF53850 24 252 2.83E-34 T 17-10-2018 VI35_05470 c0127171c40de68cbbcf73008a0d8bfa 256 Gene3D G3DSA:3.40.190.10 26 252 6.4E-84 T 17-10-2018 VI35_05470 c0127171c40de68cbbcf73008a0d8bfa 256 Pfam PF13531 Bacterial extracellular solute-binding protein 26 252 8.4E-28 T 17-10-2018 VI35_05470 c0127171c40de68cbbcf73008a0d8bfa 256 Gene3D G3DSA:3.40.190.10 104 218 6.4E-84 T 17-10-2018 VI35_15385 e8d36d5a12800c42d23ce369fd5b8a34 208 SUPERFAMILY SSF47616 82 193 3.57E-8 T 17-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily VI35_15385 e8d36d5a12800c42d23ce369fd5b8a34 208 SUPERFAMILY SSF52833 5 91 1.05E-13 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_15385 e8d36d5a12800c42d23ce369fd5b8a34 208 Gene3D G3DSA:1.20.1050.10 83 186 1.4E-40 T 17-10-2018 VI35_15385 e8d36d5a12800c42d23ce369fd5b8a34 208 Pfam PF13417 Glutathione S-transferase, N-terminal domain 10 76 1.0E-7 T 17-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 VI35_15385 e8d36d5a12800c42d23ce369fd5b8a34 208 Gene3D G3DSA:3.40.30.10 11 191 1.4E-40 T 17-10-2018 VI35_13055 491b4a514dd4b80b03ec1f12090d957d 142 Gene3D G3DSA:2.60.40.2970 15 132 9.2E-30 T 17-10-2018 VI35_13470 fbcf735ae0787b86e0a4c673ce597f68 300 Gene3D G3DSA:3.20.20.330 1 300 4.6E-73 T 17-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 VI35_13470 fbcf735ae0787b86e0a4c673ce597f68 300 Pfam PF02574 Homocysteine S-methyltransferase 8 298 7.5E-57 T 17-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 VI35_13470 fbcf735ae0787b86e0a4c673ce597f68 300 PIRSF PIRSF037505 1 242 3.5E-11 T 17-10-2018 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT GO:0005737|GO:0008270|GO:0009086|GO:0047150 Reactome: R-HSA-1614635 VI35_13470 fbcf735ae0787b86e0a4c673ce597f68 300 PIRSF PIRSF037505 246 300 0.04 T 17-10-2018 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT GO:0005737|GO:0008270|GO:0009086|GO:0047150 Reactome: R-HSA-1614635 VI35_13470 fbcf735ae0787b86e0a4c673ce597f68 300 SUPERFAMILY SSF82282 3 300 1.96E-80 T 17-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 VI35_13765 7ecc4673d15cc0df39e912579fb14f52 339 Hamap MF_00767 Succinylglutamate desuccinylase [astE]. 1 339 153.385 T 17-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 VI35_13765 7ecc4673d15cc0df39e912579fb14f52 339 SUPERFAMILY SSF53187 5 334 1.89E-83 T 17-10-2018 VI35_13765 7ecc4673d15cc0df39e912579fb14f52 339 Gene3D G3DSA:3.40.630.10 2 339 8.2E-118 T 17-10-2018 VI35_13765 7ecc4673d15cc0df39e912579fb14f52 339 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 53 335 2.6E-59 T 17-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 VI35_13765 7ecc4673d15cc0df39e912579fb14f52 339 PIRSF PIRSF017020 1 338 6.3E-131 T 17-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 VI35_13765 7ecc4673d15cc0df39e912579fb14f52 339 TIGRFAM TIGR03242 arg_catab_astE: succinylglutamate desuccinylase 6 333 8.2E-107 T 17-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 VI35_15070 33bb5c1da5e2e34f8468ced612cbab63 459 PIRSF PIRSF006603 8 458 4.1E-64 T 17-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VI35_15070 33bb5c1da5e2e34f8468ced612cbab63 459 TIGRFAM TIGR00797 matE: MATE efflux family protein 26 419 6.8E-58 T 17-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VI35_15070 33bb5c1da5e2e34f8468ced612cbab63 459 Pfam PF01554 MatE 260 416 3.1E-16 T 17-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VI35_15070 33bb5c1da5e2e34f8468ced612cbab63 459 Pfam PF01554 MatE 26 185 7.0E-28 T 17-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VI35_20840 9937a07d3daf5f5a431e52edbc6e2b13 508 Pfam PF01590 GAF domain 21 154 3.4E-9 T 17-10-2018 IPR003018 GAF domain GO:0005515 VI35_20840 9937a07d3daf5f5a431e52edbc6e2b13 508 Gene3D G3DSA:1.10.10.60 456 508 4.8E-8 T 17-10-2018 VI35_20840 9937a07d3daf5f5a431e52edbc6e2b13 508 Hamap MF_01314 Anaerobic nitric oxide reductase transcription regulator NorR [norR]. 1 507 62.368 T 17-10-2018 IPR023944 Anaerobic nitric oxide reductase transcription regulator GO:0003700|GO:0006355 VI35_20840 9937a07d3daf5f5a431e52edbc6e2b13 508 Gene3D G3DSA:3.40.50.300 179 356 1.7E-63 T 17-10-2018 VI35_20840 9937a07d3daf5f5a431e52edbc6e2b13 508 SUPERFAMILY SSF55781 21 168 1.16E-16 T 17-10-2018 VI35_20840 9937a07d3daf5f5a431e52edbc6e2b13 508 Pfam PF00158 Sigma-54 interaction domain 186 353 3.6E-67 T 17-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VI35_20840 9937a07d3daf5f5a431e52edbc6e2b13 508 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 272 287 - T 17-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VI35_20840 9937a07d3daf5f5a431e52edbc6e2b13 508 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 399 408 - T 17-10-2018 IPR025944 Sigma-54 interaction domain, conserved site VI35_20840 9937a07d3daf5f5a431e52edbc6e2b13 508 SMART SM00065 19 166 9.1E-15 T 17-10-2018 IPR003018 GAF domain GO:0005515 VI35_20840 9937a07d3daf5f5a431e52edbc6e2b13 508 SUPERFAMILY SSF46689 452 506 8.51E-8 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_20840 9937a07d3daf5f5a431e52edbc6e2b13 508 Gene3D G3DSA:3.30.450.40 3 170 7.2E-16 T 17-10-2018 IPR029016 GAF-like domain superfamily VI35_20840 9937a07d3daf5f5a431e52edbc6e2b13 508 Gene3D G3DSA:1.10.8.60 357 431 2.0E-20 T 17-10-2018 VI35_20840 9937a07d3daf5f5a431e52edbc6e2b13 508 SMART SM00382 206 349 5.8E-9 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_20840 9937a07d3daf5f5a431e52edbc6e2b13 508 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 210 223 - T 17-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VI35_20840 9937a07d3daf5f5a431e52edbc6e2b13 508 SUPERFAMILY SSF52540 185 420 3.51E-68 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_20580 b5d375033d7a2a145aa599c5d98a0ca9 319 Gene3D G3DSA:3.90.25.10 172 300 3.1E-123 T 17-10-2018 VI35_20580 b5d375033d7a2a145aa599c5d98a0ca9 319 SUPERFAMILY SSF51735 1 316 1.09E-60 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_20580 b5d375033d7a2a145aa599c5d98a0ca9 319 Pfam PF01370 NAD dependent epimerase/dehydratase family 2 246 3.2E-43 T 17-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 VI35_20580 b5d375033d7a2a145aa599c5d98a0ca9 319 TIGRFAM TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase 2 318 4.3E-135 T 17-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 VI35_20580 b5d375033d7a2a145aa599c5d98a0ca9 319 Gene3D G3DSA:3.40.50.720 3 312 3.1E-123 T 17-10-2018 VI35_20580 b5d375033d7a2a145aa599c5d98a0ca9 319 Hamap MF_01601 ADP-L-glycero-D-manno-heptose-6-epimerase [hldD]. 1 319 50.752 T 17-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 VI35_03725 3aa0d953f6727ad3357cf17238da71da 428 SUPERFAMILY SSF53383 2 425 5.28E-139 T 17-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VI35_03725 3aa0d953f6727ad3357cf17238da71da 428 Pfam PF00202 Aminotransferase class-III 33 395 9.8E-76 T 17-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VI35_03725 3aa0d953f6727ad3357cf17238da71da 428 Gene3D G3DSA:3.90.1150.10 7 418 1.2E-178 T 17-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VI35_03725 3aa0d953f6727ad3357cf17238da71da 428 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 3 426 105.264 T 17-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 VI35_03725 3aa0d953f6727ad3357cf17238da71da 428 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 234 270 - T 17-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VI35_03725 3aa0d953f6727ad3357cf17238da71da 428 Gene3D G3DSA:3.40.640.10 69 317 1.2E-178 T 17-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VI35_03725 3aa0d953f6727ad3357cf17238da71da 428 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 3 425 6.9E-194 T 17-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 VI35_09070 5720fbc2f36252776b205215a0e4e598 1431 SUPERFAMILY SSF49265 545 641 4.32E-5 T 17-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 VI35_09070 5720fbc2f36252776b205215a0e4e598 1431 SMART SM00060 557 639 0.0079 T 17-10-2018 IPR003961 Fibronectin type III GO:0005515 VI35_09070 5720fbc2f36252776b205215a0e4e598 1431 Gene3D G3DSA:2.60.40.10 601 655 4.7E-5 T 17-10-2018 IPR013783 Immunoglobulin-like fold VI35_09070 5720fbc2f36252776b205215a0e4e598 1431 SUPERFAMILY SSF49265 613 654 4.33E-5 T 17-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 VI35_09070 5720fbc2f36252776b205215a0e4e598 1431 Pfam PF09327 Domain of unknown function (DUF1983) 1126 1205 8.0E-9 T 17-10-2018 IPR015406 Domain of unknown function DUF1983 VI35_09070 5720fbc2f36252776b205215a0e4e598 1431 SUPERFAMILY SSF69279 368 435 7.37E-5 T 17-10-2018 VI35_09070 5720fbc2f36252776b205215a0e4e598 1431 Pfam PF12421 Fibronectin type III protein 1271 1366 4.5E-13 T 17-10-2018 IPR021034 Domain of unknown function, DUF3672 VI35_18325 9e7fbbb7457a35c1ce008bc9ade8fc6d 443 Hamap MF_01628 Thymidine phosphorylase [deoA]. 2 438 47.098 T 17-10-2018 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 VI35_18325 9e7fbbb7457a35c1ce008bc9ade8fc6d 443 Pfam PF02885 Glycosyl transferase family, helical bundle domain 6 67 8.6E-20 T 17-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 VI35_18325 9e7fbbb7457a35c1ce008bc9ade8fc6d 443 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 113 128 - T 17-10-2018 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 VI35_18325 9e7fbbb7457a35c1ce008bc9ade8fc6d 443 SUPERFAMILY SSF52418 72 334 1.1E-88 T 17-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 VI35_18325 9e7fbbb7457a35c1ce008bc9ade8fc6d 443 SMART SM00941 350 424 9.1E-29 T 17-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 VI35_18325 9e7fbbb7457a35c1ce008bc9ade8fc6d 443 Pfam PF00591 Glycosyl transferase family, a/b domain 80 309 7.7E-45 T 17-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 VI35_18325 9e7fbbb7457a35c1ce008bc9ade8fc6d 443 Gene3D G3DSA:1.20.970.10 7 195 3.4E-126 T 17-10-2018 VI35_18325 9e7fbbb7457a35c1ce008bc9ade8fc6d 443 TIGRFAM TIGR02644 Y_phosphoryl: pyrimidine-nucleoside phosphorylase 5 423 1.5E-160 T 17-10-2018 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic GO:0006213|GO:0016154 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181|Reactome: R-HSA-73614|Reactome: R-HSA-73621 VI35_18325 9e7fbbb7457a35c1ce008bc9ade8fc6d 443 SUPERFAMILY SSF47648 2 70 1.7E-22 T 17-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 VI35_18325 9e7fbbb7457a35c1ce008bc9ade8fc6d 443 TIGRFAM TIGR02643 T_phosphoryl: thymidine phosphorylase 2 438 3.2E-222 T 17-10-2018 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 VI35_18325 9e7fbbb7457a35c1ce008bc9ade8fc6d 443 Gene3D G3DSA:3.40.1030.10 70 322 3.4E-126 T 17-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 VI35_18325 9e7fbbb7457a35c1ce008bc9ade8fc6d 443 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 350 423 3.7E-22 T 17-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 VI35_18325 9e7fbbb7457a35c1ce008bc9ade8fc6d 443 SUPERFAMILY SSF54680 337 438 8.5E-31 T 17-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 VI35_18325 9e7fbbb7457a35c1ce008bc9ade8fc6d 443 PIRSF PIRSF000478 1 438 2.9E-150 T 17-10-2018 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 VI35_18325 9e7fbbb7457a35c1ce008bc9ade8fc6d 443 Gene3D G3DSA:3.90.1170.30 337 433 2.9E-31 T 17-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 VI35_20810 3db347a14a551b30bf345cc1d25ee29b 488 Hamap MF_00544 Tryptophanase [tnaA]. 4 471 96.852 T 17-10-2018 IPR013440 Tryptophanase GO:0006568|GO:0009034 KEGG: 00380+4.1.99.1 VI35_20810 3db347a14a551b30bf345cc1d25ee29b 488 Pfam PF01212 Beta-eliminating lyase 49 437 2.1E-87 T 17-10-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 VI35_20810 3db347a14a551b30bf345cc1d25ee29b 488 PIRSF PIRSF001386 3 472 4.4E-202 T 17-10-2018 IPR011166 Beta-eliminating lyase family GO:0009072|GO:0016830 KEGG: 00380+4.1.99.1 VI35_20810 3db347a14a551b30bf345cc1d25ee29b 488 TIGRFAM TIGR02617 tnaA_trp_ase: tryptophanase 5 471 5.1E-291 T 17-10-2018 IPR013440 Tryptophanase GO:0006568|GO:0009034 KEGG: 00380+4.1.99.1 VI35_20810 3db347a14a551b30bf345cc1d25ee29b 488 ProSitePatterns PS00853 Beta-eliminating lyases pyridoxal-phosphate attachment site. 260 278 - T 17-10-2018 IPR018176 Tryptophanase, conserved site KEGG: 00380+4.1.99.1 VI35_20810 3db347a14a551b30bf345cc1d25ee29b 488 Gene3D G3DSA:3.40.640.10 61 334 2.9E-196 T 17-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VI35_20810 3db347a14a551b30bf345cc1d25ee29b 488 Gene3D G3DSA:3.90.1150.10 10 468 2.9E-196 T 17-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VI35_20810 3db347a14a551b30bf345cc1d25ee29b 488 SUPERFAMILY SSF53383 6 471 7.86E-122 T 17-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VI35_08435 d05189e3fcdcfa61c0b1d28ac018a5ac 171 Pfam PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 12 160 3.3E-39 T 17-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN VI35_08435 d05189e3fcdcfa61c0b1d28ac018a5ac 171 TIGRFAM TIGR03352 VI_chp_3: type VI secretion lipoprotein, VC_A0113 family 5 163 1.3E-45 T 17-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN VI35_08435 d05189e3fcdcfa61c0b1d28ac018a5ac 171 Gene3D G3DSA:2.60.40.4150 35 170 3.0E-35 T 17-10-2018 IPR038706 Type VI secretion protein SciN-like superfamily VI35_04775 f17664e21b5af41abc399de5193510d4 162 PIRSF PIRSF006162 10 162 1.3E-46 T 17-10-2018 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 VI35_04775 f17664e21b5af41abc399de5193510d4 162 SUPERFAMILY SSF101307 13 161 1.83E-45 T 17-10-2018 IPR036681 PgpA-like superfamily GO:0006629|GO:0008962 VI35_04775 f17664e21b5af41abc399de5193510d4 162 Pfam PF04608 Phosphatidylglycerophosphatase A 20 159 1.2E-50 T 17-10-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 VI35_04570 22eb933d3486d6460e1640b2e865db16 268 Gene3D G3DSA:3.40.50.620 18 231 9.0E-61 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_04570 22eb933d3486d6460e1640b2e865db16 268 Hamap MF_00063 Phosphoadenosine phosphosulfate reductase [cysH]. 24 258 39.077 T 17-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 VI35_04570 22eb933d3486d6460e1640b2e865db16 268 TIGRFAM TIGR02057 PAPS_reductase: phosphoadenosine phosphosulfate reductase 36 257 5.9E-83 T 17-10-2018 IPR011800 Phosphoadenosine phosphosulphate reductase CysH GO:0004604|GO:0019379 KEGG: 00920+1.8.4.8 VI35_04570 22eb933d3486d6460e1640b2e865db16 268 SUPERFAMILY SSF52402 39 223 1.51E-52 T 17-10-2018 VI35_04570 22eb933d3486d6460e1640b2e865db16 268 TIGRFAM TIGR00434 cysH: phosophoadenylyl-sulfate reductase 50 258 8.7E-81 T 17-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 VI35_04570 22eb933d3486d6460e1640b2e865db16 268 PIRSF PIRSF000857 5 262 4.0E-51 T 17-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 VI35_04570 22eb933d3486d6460e1640b2e865db16 268 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 63 234 1.4E-45 T 17-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 VI35_07670 a62bda8ebf514c585b63966bfbe66a11 326 Gene3D G3DSA:3.40.50.300 1 324 7.0E-99 T 17-10-2018 VI35_07670 a62bda8ebf514c585b63966bfbe66a11 326 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_07670 a62bda8ebf514c585b63966bfbe66a11 326 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 232 315 1.7E-25 T 17-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VI35_07670 a62bda8ebf514c585b63966bfbe66a11 326 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 232 296 1.2E-20 T 17-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VI35_07670 a62bda8ebf514c585b63966bfbe66a11 326 Pfam PF00005 ABC transporter 24 180 3.9E-27 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_07670 a62bda8ebf514c585b63966bfbe66a11 326 SMART SM00382 32 238 1.3E-14 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_07670 a62bda8ebf514c585b63966bfbe66a11 326 SUPERFAMILY SSF52540 33 301 3.29E-68 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_03410 89a30b3150ba086e23072ca4652f7aa4 147 Pfam PF09424 Yqey-like protein 4 146 5.4E-55 T 17-10-2018 IPR019004 Uncharacterised protein YqeY/AIM41 VI35_03410 89a30b3150ba086e23072ca4652f7aa4 147 Gene3D G3DSA:1.10.1510.10 1 90 5.3E-28 T 17-10-2018 VI35_03410 89a30b3150ba086e23072ca4652f7aa4 147 Gene3D G3DSA:1.10.10.410 91 147 6.0E-19 T 17-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal VI35_03410 89a30b3150ba086e23072ca4652f7aa4 147 SUPERFAMILY SSF89095 2 146 4.5E-41 T 17-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 VI35_05650 18decaf6d7cd42d569b7f2600febc67c 346 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 64 2.4E-16 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_05650 18decaf6d7cd42d569b7f2600febc67c 346 Gene3D G3DSA:3.40.190.10 97 308 1.4E-32 T 17-10-2018 VI35_05650 18decaf6d7cd42d569b7f2600febc67c 346 Pfam PF03466 LysR substrate binding domain 96 312 1.4E-15 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_05650 18decaf6d7cd42d569b7f2600febc67c 346 SUPERFAMILY SSF53850 97 312 2.33E-25 T 17-10-2018 VI35_05650 18decaf6d7cd42d569b7f2600febc67c 346 Gene3D G3DSA:1.10.10.10 1 88 2.2E-25 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_05650 18decaf6d7cd42d569b7f2600febc67c 346 SUPERFAMILY SSF46785 7 84 4.22E-17 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_05650 18decaf6d7cd42d569b7f2600febc67c 346 Gene3D G3DSA:3.40.190.10 179 280 1.4E-32 T 17-10-2018 VI35_10445 bafe1d8a5e85481bddb803db900fc1fe 185 Pfam PF07152 YaeQ protein 1 173 1.2E-76 T 17-10-2018 IPR009822 YaeQ VI35_10445 bafe1d8a5e85481bddb803db900fc1fe 185 SUPERFAMILY SSF52980 2 178 2.44E-73 T 17-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 VI35_10445 bafe1d8a5e85481bddb803db900fc1fe 185 Gene3D G3DSA:3.10.640.10 1 181 2.1E-80 T 17-10-2018 IPR038590 YaeQ superfamily VI35_10445 bafe1d8a5e85481bddb803db900fc1fe 185 SMART SM01322 1 176 4.5E-123 T 17-10-2018 IPR009822 YaeQ VI35_10445 bafe1d8a5e85481bddb803db900fc1fe 185 PIRSF PIRSF011484 1 180 2.4E-70 T 17-10-2018 IPR009822 YaeQ VI35_15670 5f6f7ff3429d6107794983f06fa2d914 128 Pfam PF04241 Protein of unknown function (DUF423) 21 106 1.1E-24 T 17-10-2018 IPR006696 Protein of unknown function DUF423 VI35_20320 e8ea86dd8d816808f78950005c660ede 321 Pfam PF02653 Branched-chain amino acid transport system / permease component 9 296 1.3E-37 T 17-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 VI35_10855 467cb2ed529799874fbb5b40a656d3b6 476 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 188 199 - T 17-10-2018 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 VI35_10855 467cb2ed529799874fbb5b40a656d3b6 476 Gene3D G3DSA:3.40.50.150 2 310 1.8E-95 T 17-10-2018 VI35_10855 467cb2ed529799874fbb5b40a656d3b6 476 Pfam PF01189 16S rRNA methyltransferase RsmB/F 118 309 3.6E-47 T 17-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 VI35_10855 467cb2ed529799874fbb5b40a656d3b6 476 SUPERFAMILY SSF53335 7 310 1.25E-62 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_10855 467cb2ed529799874fbb5b40a656d3b6 476 Pfam PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF 7 103 2.8E-26 T 17-10-2018 IPR031341 Ribosomal RNA small subunit methyltransferase F, N-terminal Reactome: R-HSA-6790901|Reactome: R-HSA-8869496 VI35_10855 467cb2ed529799874fbb5b40a656d3b6 476 Gene3D G3DSA:2.30.130.90 312 476 3.6E-56 T 17-10-2018 VI35_10855 467cb2ed529799874fbb5b40a656d3b6 476 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 89 103 6.3E-27 T 17-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VI35_10855 467cb2ed529799874fbb5b40a656d3b6 476 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 239 255 6.3E-27 T 17-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VI35_10855 467cb2ed529799874fbb5b40a656d3b6 476 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 189 201 6.3E-27 T 17-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VI35_10855 467cb2ed529799874fbb5b40a656d3b6 476 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 293 310 6.3E-27 T 17-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VI35_10855 467cb2ed529799874fbb5b40a656d3b6 476 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 122 132 6.3E-27 T 17-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VI35_10855 467cb2ed529799874fbb5b40a656d3b6 476 Hamap MF_01579 Ribosomal RNA small subunit methyltransferase F [rsmF]. 5 474 64.328 T 17-10-2018 IPR023545 rRNA small subunit methyltransferase F GO:0008649 VI35_10855 467cb2ed529799874fbb5b40a656d3b6 476 Pfam PF13636 RNA-binding PUA-like domain of methyltransferase RsmF 420 469 3.3E-14 T 17-10-2018 IPR027391 rRNA small subunit methyltransferase F, RNA-binding PUA-like domain VI35_10855 467cb2ed529799874fbb5b40a656d3b6 476 TIGRFAM TIGR00446 nop2p: NOL1/NOP2/sun family putative RNA methylase 40 310 3.8E-95 T 17-10-2018 IPR011023 Nop2p GO:0003723|GO:0006364|GO:0008757 Reactome: R-HSA-6790901|Reactome: R-HSA-8869496 VI35_17560 6edde5f7ab21a42ded5a797bccebeb52 151 Pfam PF03734 L,D-transpeptidase catalytic domain 17 149 2.3E-20 T 17-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 VI35_17560 6edde5f7ab21a42ded5a797bccebeb52 151 Gene3D G3DSA:2.40.440.10 12 149 4.9E-17 T 17-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like VI35_17560 6edde5f7ab21a42ded5a797bccebeb52 151 SUPERFAMILY SSF141523 15 149 4.05E-24 T 17-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like VI35_18505 d549927f0ff405fa0a63e8134caf81a7 159 Gene3D G3DSA:1.10.10.10 1 140 1.3E-28 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_18505 d549927f0ff405fa0a63e8134caf81a7 159 Pfam PF01047 MarR family 31 89 8.8E-15 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_18505 d549927f0ff405fa0a63e8134caf81a7 159 PRINTS PR00598 Bacterial regulatory protein MarR family signature 65 80 2.1E-5 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_18505 d549927f0ff405fa0a63e8134caf81a7 159 PRINTS PR00598 Bacterial regulatory protein MarR family signature 84 100 2.1E-5 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_18505 d549927f0ff405fa0a63e8134caf81a7 159 PRINTS PR00598 Bacterial regulatory protein MarR family signature 48 64 2.1E-5 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_18505 d549927f0ff405fa0a63e8134caf81a7 159 SUPERFAMILY SSF46785 4 139 1.79E-31 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_18505 d549927f0ff405fa0a63e8134caf81a7 159 SMART SM00347 24 124 1.1E-19 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_10370 b2d839e24b65219f0c784ec9002723b2 388 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 83 101 - T 17-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 VI35_10370 b2d839e24b65219f0c784ec9002723b2 388 Pfam PF00108 Thiolase, N-terminal domain 3 256 1.5E-84 T 17-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 VI35_10370 b2d839e24b65219f0c784ec9002723b2 388 ProSitePatterns PS00099 Thiolases active site. 369 382 - T 17-10-2018 IPR020610 Thiolase, active site GO:0016747 VI35_10370 b2d839e24b65219f0c784ec9002723b2 388 Pfam PF02803 Thiolase, C-terminal domain 266 386 1.6E-40 T 17-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 VI35_10370 b2d839e24b65219f0c784ec9002723b2 388 Gene3D G3DSA:3.40.47.10 125 385 4.5E-137 T 17-10-2018 IPR016039 Thiolase-like GO:0003824 VI35_10370 b2d839e24b65219f0c784ec9002723b2 388 Gene3D G3DSA:3.40.47.10 4 271 4.5E-137 T 17-10-2018 IPR016039 Thiolase-like GO:0003824 VI35_10370 b2d839e24b65219f0c784ec9002723b2 388 PIRSF PIRSF000429 1 388 8.9E-108 T 17-10-2018 IPR002155 Thiolase GO:0016747 VI35_10370 b2d839e24b65219f0c784ec9002723b2 388 SUPERFAMILY SSF53901 267 386 2.11E-38 T 17-10-2018 IPR016039 Thiolase-like GO:0003824 VI35_10370 b2d839e24b65219f0c784ec9002723b2 388 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 5 386 1.0E-122 T 17-10-2018 IPR002155 Thiolase GO:0016747 VI35_10370 b2d839e24b65219f0c784ec9002723b2 388 SUPERFAMILY SSF53901 2 265 6.69E-75 T 17-10-2018 IPR016039 Thiolase-like GO:0003824 VI35_10600 8ebd3884ccdc77f71cbbf8ed2090ea92 122 Gene3D G3DSA:1.20.120.910 1 119 1.1E-10 T 17-10-2018 VI35_20940 86ff033af6e6f06ed023c09b55ce0de2 496 SUPERFAMILY SSF53067 6 124 1.23E-33 T 17-10-2018 VI35_20940 86ff033af6e6f06ed023c09b55ce0de2 496 Gene3D G3DSA:1.10.3210.10 303 496 4.2E-50 T 17-10-2018 VI35_20940 86ff033af6e6f06ed023c09b55ce0de2 496 Hamap MF_01550 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [gppA]. 1 494 53.942 T 17-10-2018 IPR023709 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase GO:0008894|GO:0015974 KEGG: 00230+3.6.1.40 VI35_20940 86ff033af6e6f06ed023c09b55ce0de2 496 SUPERFAMILY SSF53067 131 301 7.25E-41 T 17-10-2018 VI35_20940 86ff033af6e6f06ed023c09b55ce0de2 496 Pfam PF02541 Ppx/GppA phosphatase family 20 300 4.2E-82 T 17-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 VI35_20940 86ff033af6e6f06ed023c09b55ce0de2 496 Gene3D G3DSA:3.30.420.150 111 288 4.5E-79 T 17-10-2018 VI35_20940 86ff033af6e6f06ed023c09b55ce0de2 496 Gene3D G3DSA:3.30.420.40 8 296 4.5E-79 T 17-10-2018 VI35_20940 86ff033af6e6f06ed023c09b55ce0de2 496 SUPERFAMILY SSF109604 306 493 2.74E-46 T 17-10-2018 VI35_20940 86ff033af6e6f06ed023c09b55ce0de2 496 PIRSF PIRSF001267 1 496 2.5E-172 T 17-10-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 VI35_01365 a4fa55bc09136f3a0a6a3b3e3d31135e 394 Gene3D G3DSA:2.40.30.10 338 393 5.2E-29 T 17-10-2018 VI35_01365 a4fa55bc09136f3a0a6a3b3e3d31135e 394 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 9.2E-15 T 17-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VI35_01365 a4fa55bc09136f3a0a6a3b3e3d31135e 394 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 2 393 1.2E-236 T 17-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 VI35_01365 a4fa55bc09136f3a0a6a3b3e3d31135e 394 Pfam PF03144 Elongation factor Tu domain 2 225 293 5.7E-17 T 17-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 VI35_01365 a4fa55bc09136f3a0a6a3b3e3d31135e 394 Gene3D G3DSA:2.40.30.10 206 334 5.3E-54 T 17-10-2018 VI35_01365 a4fa55bc09136f3a0a6a3b3e3d31135e 394 Pfam PF00009 Elongation factor Tu GTP binding domain 10 201 6.0E-58 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_01365 a4fa55bc09136f3a0a6a3b3e3d31135e 394 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 17-10-2018 IPR031157 Tr-type G domain, conserved site VI35_01365 a4fa55bc09136f3a0a6a3b3e3d31135e 394 PRINTS PR00315 GTP-binding elongation factor signature 58 66 4.5E-25 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_01365 a4fa55bc09136f3a0a6a3b3e3d31135e 394 PRINTS PR00315 GTP-binding elongation factor signature 14 27 4.5E-25 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_01365 a4fa55bc09136f3a0a6a3b3e3d31135e 394 PRINTS PR00315 GTP-binding elongation factor signature 94 105 4.5E-25 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_01365 a4fa55bc09136f3a0a6a3b3e3d31135e 394 PRINTS PR00315 GTP-binding elongation factor signature 131 140 4.5E-25 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_01365 a4fa55bc09136f3a0a6a3b3e3d31135e 394 PRINTS PR00315 GTP-binding elongation factor signature 78 88 4.5E-25 T 17-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VI35_01365 a4fa55bc09136f3a0a6a3b3e3d31135e 394 SUPERFAMILY SSF50465 298 393 6.04E-36 T 17-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal VI35_01365 a4fa55bc09136f3a0a6a3b3e3d31135e 394 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 394 60.831 T 17-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 VI35_01365 a4fa55bc09136f3a0a6a3b3e3d31135e 394 Gene3D G3DSA:3.40.50.300 1 203 1.2E-70 T 17-10-2018 VI35_01365 a4fa55bc09136f3a0a6a3b3e3d31135e 394 Pfam PF03143 Elongation factor Tu C-terminal domain 298 392 1.2E-33 T 17-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal VI35_01365 a4fa55bc09136f3a0a6a3b3e3d31135e 394 SUPERFAMILY SSF52540 6 219 1.47E-60 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_01365 a4fa55bc09136f3a0a6a3b3e3d31135e 394 SUPERFAMILY SSF50447 205 301 3.93E-30 T 17-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VI35_14115 e982e25bb4882495a851c88e9302f0e7 122 PIRSF PIRSF007028 1 120 7.8E-48 T 17-10-2018 IPR009874 Protein of unknown function DUF1428 VI35_14115 e982e25bb4882495a851c88e9302f0e7 122 SUPERFAMILY SSF54909 1 119 1.29E-48 T 17-10-2018 IPR011008 Dimeric alpha-beta barrel VI35_14115 e982e25bb4882495a851c88e9302f0e7 122 Gene3D G3DSA:3.30.70.100 1 120 2.5E-45 T 17-10-2018 VI35_14115 e982e25bb4882495a851c88e9302f0e7 122 Pfam PF07237 Protein of unknown function (DUF1428) 2 106 9.6E-44 T 17-10-2018 IPR009874 Protein of unknown function DUF1428 VI35_12595 3e9af5b0d63413b930759d33212389f5 397 Gene3D G3DSA:1.20.1250.20 15 390 1.3E-38 T 17-10-2018 VI35_12595 3e9af5b0d63413b930759d33212389f5 397 Pfam PF07690 Major Facilitator Superfamily 27 241 1.7E-13 T 17-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VI35_12595 3e9af5b0d63413b930759d33212389f5 397 SUPERFAMILY SSF103473 17 393 1.57E-47 T 17-10-2018 IPR036259 MFS transporter superfamily VI35_15750 34afffca330201cea93a321cac0ed19d 190 Pfam PF03923 Uncharacterized lipoprotein 28 186 1.2E-40 T 17-10-2018 IPR005619 Uncharacterised protein family, YajG VI35_04365 4a4abda91ed94e6652485d8e8ec50bdf 457 Pfam PF01618 MotA/TolQ/ExbB proton channel family 326 436 1.3E-29 T 17-10-2018 IPR002898 MotA/TolQ/ExbB proton channel VI35_04365 4a4abda91ed94e6652485d8e8ec50bdf 457 PIRSF PIRSF037714 2 457 1.0E-156 T 17-10-2018 IPR017270 Putative MotA/TolQ/ExbB family protein VI35_04220 fe1edef4aac6cc2258dfd9a957040552 83 Pfam PF11173 Protein of unknown function (DUF2960) 1 80 1.2E-36 T 17-10-2018 IPR021343 Protein of unknown function DUF2960 VI35_17765 0093bfae23a7e2055832ebcc28404e8f 151 SUPERFAMILY SSF55729 1 149 1.12E-31 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_17765 0093bfae23a7e2055832ebcc28404e8f 151 Pfam PF13673 Acetyltransferase (GNAT) domain 49 149 6.5E-12 T 17-10-2018 IPR000182 GNAT domain VI35_17765 0093bfae23a7e2055832ebcc28404e8f 151 Gene3D G3DSA:3.40.630.30 1 149 1.7E-39 T 17-10-2018 VI35_01710 dfca8039fee8b23f52fa28de802d4347 354 Pfam PF11301 Protein of unknown function (DUF3103) 25 352 7.0E-134 T 17-10-2018 IPR021452 Protein of unknown function DUF3103 VI35_15945 c48c8ec34ec1fb982056f7db92251a73 184 Pfam PF11355 Protein of unknown function (DUF3157) 7 182 1.5E-32 T 17-10-2018 IPR021501 Protein of unknown function DUF3157 VI35_12095 4c0e2c62d4fcf9461e0718f9cf3f6e8e 646 SUPERFAMILY SSF55073 223 378 3.45E-41 T 17-10-2018 IPR029787 Nucleotide cyclase VI35_12095 4c0e2c62d4fcf9461e0718f9cf3f6e8e 646 SMART SM00052 386 626 1.1E-96 T 17-10-2018 IPR001633 EAL domain VI35_12095 4c0e2c62d4fcf9461e0718f9cf3f6e8e 646 SUPERFAMILY SSF141868 393 629 4.05E-78 T 17-10-2018 IPR035919 EAL domain superfamily VI35_12095 4c0e2c62d4fcf9461e0718f9cf3f6e8e 646 Gene3D G3DSA:3.20.20.450 389 631 8.0E-86 T 17-10-2018 IPR035919 EAL domain superfamily VI35_12095 4c0e2c62d4fcf9461e0718f9cf3f6e8e 646 Pfam PF00563 EAL domain 394 621 6.7E-65 T 17-10-2018 IPR001633 EAL domain VI35_12095 4c0e2c62d4fcf9461e0718f9cf3f6e8e 646 SMART SM00267 205 376 2.1E-52 T 17-10-2018 IPR000160 GGDEF domain VI35_12095 4c0e2c62d4fcf9461e0718f9cf3f6e8e 646 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 216 372 1.0E-35 T 17-10-2018 IPR000160 GGDEF domain VI35_12095 4c0e2c62d4fcf9461e0718f9cf3f6e8e 646 Pfam PF00990 Diguanylate cyclase, GGDEF domain 218 370 7.6E-39 T 17-10-2018 IPR000160 GGDEF domain VI35_12095 4c0e2c62d4fcf9461e0718f9cf3f6e8e 646 Gene3D G3DSA:3.30.70.270 213 388 2.8E-52 T 17-10-2018 VI35_08130 2b758574fee3d477a44e6dc195e8b421 442 Pfam PF00696 Amino acid kinase family 26 266 8.5E-26 T 17-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 VI35_08130 2b758574fee3d477a44e6dc195e8b421 442 PIRSF PIRSF000423 1 441 1.9E-198 T 17-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 VI35_08130 2b758574fee3d477a44e6dc195e8b421 442 SUPERFAMILY SSF55729 298 420 9.31E-18 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_08130 2b758574fee3d477a44e6dc195e8b421 442 Hamap MF_01105 Amino-acid acetyltransferase [argA]. 1 441 220.66 T 17-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 VI35_08130 2b758574fee3d477a44e6dc195e8b421 442 Pfam PF00583 Acetyltransferase (GNAT) family 335 412 4.7E-9 T 17-10-2018 IPR000182 GNAT domain VI35_08130 2b758574fee3d477a44e6dc195e8b421 442 SUPERFAMILY SSF53633 6 292 1.96E-65 T 17-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VI35_08130 2b758574fee3d477a44e6dc195e8b421 442 Gene3D G3DSA:3.40.1160.10 7 293 1.4E-84 T 17-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VI35_08130 2b758574fee3d477a44e6dc195e8b421 442 TIGRFAM TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase 8 440 5.3E-190 T 17-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 VI35_08130 2b758574fee3d477a44e6dc195e8b421 442 Gene3D G3DSA:3.40.630.30 294 441 4.7E-38 T 17-10-2018 VI35_01700 7a2d43c9479d47d8235abbdbd6a6a316 263 SUPERFAMILY SSF55729 123 255 2.84E-16 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_01700 7a2d43c9479d47d8235abbdbd6a6a316 263 Gene3D G3DSA:3.40.630.30 13 254 3.3E-23 T 17-10-2018 VI35_01700 7a2d43c9479d47d8235abbdbd6a6a316 263 Pfam PF13673 Acetyltransferase (GNAT) domain 156 253 2.3E-7 T 17-10-2018 IPR000182 GNAT domain VI35_14320 033eb6136d203b21b44a74b3f455212a 496 Pfam PF11471 Maltoporin periplasmic N-terminal extension 5 56 1.1E-14 T 17-10-2018 IPR021570 LamB-type porin N-terminal domain VI35_14320 033eb6136d203b21b44a74b3f455212a 496 Pfam PF02264 LamB porin 90 496 1.2E-101 T 17-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 VI35_14320 033eb6136d203b21b44a74b3f455212a 496 SUPERFAMILY SSF56935 87 496 1.53E-120 T 17-10-2018 VI35_14320 033eb6136d203b21b44a74b3f455212a 496 ProDom PD008788 PORIN MEMBRANE PRECURSOR SIGNAL MALTOPORIN OUTER ION TRANSMEMBRANE RECEPTOR LAMB 94 492 8.0E-135 T 17-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 VI35_14320 033eb6136d203b21b44a74b3f455212a 496 Gene3D G3DSA:2.40.170.10 86 496 8.3E-159 T 17-10-2018 IPR036998 Porin, LamB-type superfamily GO:0015288|GO:0016020|GO:0034219 VI35_10180 08faa12f3def627fceb0fdd9e4445344 286 SUPERFAMILY SSF56112 19 225 1.74E-20 T 17-10-2018 IPR011009 Protein kinase-like domain superfamily VI35_10180 08faa12f3def627fceb0fdd9e4445344 286 SMART SM00090 7 235 3.4E-12 T 17-10-2018 IPR000687 RIO kinase GO:0004674|GO:0005524 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1|Reactome: R-HSA-6791226 VI35_10180 08faa12f3def627fceb0fdd9e4445344 286 ProSitePatterns PS01245 RIO1/ZK632.3/MJ0444 family signature. 164 175 - T 17-10-2018 IPR018935 RIO kinase, conserved site GO:0004674|GO:0005524 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1|Reactome: R-HSA-6791226 VI35_10180 08faa12f3def627fceb0fdd9e4445344 286 Gene3D G3DSA:3.30.200.20 16 126 6.0E-5 T 17-10-2018 VI35_10180 08faa12f3def627fceb0fdd9e4445344 286 Pfam PF01163 RIO1 family 30 221 3.9E-42 T 17-10-2018 VI35_10180 08faa12f3def627fceb0fdd9e4445344 286 Gene3D G3DSA:1.10.510.10 135 222 5.0E-19 T 17-10-2018 VI35_03695 f2ca031417a8de061bf263cbedc25d5a 130 Pfam PF00893 Small Multidrug Resistance protein 11 100 1.9E-16 T 17-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 VI35_03695 f2ca031417a8de061bf263cbedc25d5a 130 Gene3D G3DSA:1.10.3730.20 9 115 3.2E-25 T 17-10-2018 VI35_03695 f2ca031417a8de061bf263cbedc25d5a 130 SUPERFAMILY SSF103481 12 113 5.36E-14 T 17-10-2018 VI35_10805 2d52cbe80115deba61c2e77c816b8cd9 244 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 8 242 9.2E-102 T 17-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VI35_10805 2d52cbe80115deba61c2e77c816b8cd9 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 6.5E-16 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_10805 2d52cbe80115deba61c2e77c816b8cd9 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 6.5E-16 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_10805 2d52cbe80115deba61c2e77c816b8cd9 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 6.5E-16 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_10805 2d52cbe80115deba61c2e77c816b8cd9 244 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 17-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 VI35_10805 2d52cbe80115deba61c2e77c816b8cd9 244 Gene3D G3DSA:3.40.50.720 1 244 1.5E-88 T 17-10-2018 VI35_10805 2d52cbe80115deba61c2e77c816b8cd9 244 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 241 1.7E-69 T 17-10-2018 VI35_10805 2d52cbe80115deba61c2e77c816b8cd9 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 225 4.8E-52 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_10805 2d52cbe80115deba61c2e77c816b8cd9 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 4.8E-52 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_10805 2d52cbe80115deba61c2e77c816b8cd9 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 4.8E-52 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_10805 2d52cbe80115deba61c2e77c816b8cd9 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 4.8E-52 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_10805 2d52cbe80115deba61c2e77c816b8cd9 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 4.8E-52 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_10805 2d52cbe80115deba61c2e77c816b8cd9 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 4.8E-52 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_10805 2d52cbe80115deba61c2e77c816b8cd9 244 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 182 3.8E-5 T 17-10-2018 VI35_10805 2d52cbe80115deba61c2e77c816b8cd9 244 SUPERFAMILY SSF51735 5 243 5.45E-88 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_00615 77e178d61cfb485608e7bb7d6bab4560 376 Pfam PF01389 OmpA-like transmembrane domain 24 223 1.5E-41 T 17-10-2018 IPR000498 Outer membrane protein OmpA-like, transmembrane domain GO:0009279|GO:0016021 VI35_00615 77e178d61cfb485608e7bb7d6bab4560 376 SUPERFAMILY SSF56925 22 223 4.45E-31 T 17-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VI35_00615 77e178d61cfb485608e7bb7d6bab4560 376 SUPERFAMILY SSF103088 247 368 5.62E-30 T 17-10-2018 IPR036737 OmpA-like domain superfamily VI35_00615 77e178d61cfb485608e7bb7d6bab4560 376 Gene3D G3DSA:2.40.160.20 11 243 2.6E-56 T 17-10-2018 VI35_00615 77e178d61cfb485608e7bb7d6bab4560 376 ProSitePatterns PS01068 OmpA-like domain. 292 336 - T 17-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 VI35_00615 77e178d61cfb485608e7bb7d6bab4560 376 Gene3D G3DSA:3.30.1330.60 244 372 1.3E-38 T 17-10-2018 IPR036737 OmpA-like domain superfamily VI35_00615 77e178d61cfb485608e7bb7d6bab4560 376 Pfam PF00691 OmpA family 257 349 8.0E-22 T 17-10-2018 IPR006665 OmpA-like domain VI35_00615 77e178d61cfb485608e7bb7d6bab4560 376 PRINTS PR01022 Outer membrane protein A signature 123 139 2.8E-9 T 17-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 VI35_00615 77e178d61cfb485608e7bb7d6bab4560 376 PRINTS PR01022 Outer membrane protein A signature 314 333 2.8E-9 T 17-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 VI35_00615 77e178d61cfb485608e7bb7d6bab4560 376 PRINTS PR01022 Outer membrane protein A signature 347 360 2.8E-9 T 17-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 VI35_00615 77e178d61cfb485608e7bb7d6bab4560 376 PRINTS PR01021 OMPA domain signature 305 321 8.9E-21 T 17-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VI35_00615 77e178d61cfb485608e7bb7d6bab4560 376 PRINTS PR01021 OMPA domain signature 258 280 8.9E-21 T 17-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VI35_00615 77e178d61cfb485608e7bb7d6bab4560 376 PRINTS PR01021 OMPA domain signature 290 305 8.9E-21 T 17-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VI35_08105 a7ab755ab38985e75d86fa275de118ae 105 SUPERFAMILY SSF117782 1 105 2.09E-39 T 17-10-2018 IPR035439 UPF0145 domain superfamily VI35_08105 a7ab755ab38985e75d86fa275de118ae 105 Pfam PF01906 Putative heavy-metal-binding 1 105 1.2E-40 T 17-10-2018 IPR002765 Uncharacterised protein family UPF0145 VI35_08105 a7ab755ab38985e75d86fa275de118ae 105 Hamap MF_00338 UPF0145 protein YbjQ [ybjQ]. 1 105 25.032 T 17-10-2018 IPR002765 Uncharacterised protein family UPF0145 VI35_08105 a7ab755ab38985e75d86fa275de118ae 105 Gene3D G3DSA:3.30.110.70 2 105 1.4E-44 T 17-10-2018 VI35_00285 291663e4cb311701cd53b8c2bd7eaf85 190 Pfam PF16449 Fimbrillin MatB 25 189 3.1E-82 T 17-10-2018 IPR016514 Fimbrial protein EcpA VI35_00285 291663e4cb311701cd53b8c2bd7eaf85 190 Gene3D G3DSA:2.60.40.3290 12 190 7.8E-66 T 17-10-2018 IPR038478 Fimbrillin subunit EcpA superfamily VI35_07065 09a2225bde736e309dbaab6162493da6 482 SMART SM00345 7 66 1.1E-15 T 17-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VI35_07065 09a2225bde736e309dbaab6162493da6 482 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 66 1.3E-12 T 17-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VI35_07065 09a2225bde736e309dbaab6162493da6 482 SUPERFAMILY SSF53383 93 465 7.21E-91 T 17-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VI35_07065 09a2225bde736e309dbaab6162493da6 482 Pfam PF00155 Aminotransferase class I and II 146 458 5.9E-33 T 17-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 VI35_07065 09a2225bde736e309dbaab6162493da6 482 Gene3D G3DSA:1.10.10.10 2 68 2.8E-19 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_07065 09a2225bde736e309dbaab6162493da6 482 Gene3D G3DSA:3.40.640.10 140 358 3.1E-94 T 17-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VI35_07065 09a2225bde736e309dbaab6162493da6 482 SUPERFAMILY SSF46785 1 76 2.21E-19 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_07065 09a2225bde736e309dbaab6162493da6 482 Gene3D G3DSA:3.90.1150.10 95 462 3.1E-94 T 17-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VI35_01685 caef988ffa44b031de208208e5a5437e 203 Gene3D G3DSA:2.40.160.20 21 203 3.7E-71 T 17-10-2018 VI35_01685 caef988ffa44b031de208208e5a5437e 203 Pfam PF03922 OmpW family 22 203 1.2E-56 T 17-10-2018 IPR005618 Outer membrane protein, OmpW GO:0019867 VI35_01685 caef988ffa44b031de208208e5a5437e 203 ProSitePatterns PS00695 Enterobacterial virulence outer membrane protein signature 2. 195 203 - T 17-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 VI35_01685 caef988ffa44b031de208208e5a5437e 203 SUPERFAMILY SSF56925 22 203 8.63E-32 T 17-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VI35_09520 93be4652f93980388ca74e6dfeba9d79 379 Gene3D G3DSA:3.40.640.10 24 273 7.2E-117 T 17-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VI35_09520 93be4652f93980388ca74e6dfeba9d79 379 SUPERFAMILY SSF53383 13 372 4.52E-80 T 17-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VI35_09520 93be4652f93980388ca74e6dfeba9d79 379 Hamap MF_01376 2-aminoethylphosphonate--pyruvate transaminase [phnW]. 1 379 195.196 T 17-10-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 VI35_09520 93be4652f93980388ca74e6dfeba9d79 379 TIGRFAM TIGR03301 PhnW-AepZ: 2-aminoethylphosphonate aminotransferase 14 372 2.1E-149 T 17-10-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 VI35_09520 93be4652f93980388ca74e6dfeba9d79 379 TIGRFAM TIGR02326 transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase 12 376 3.0E-172 T 17-10-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 VI35_09520 93be4652f93980388ca74e6dfeba9d79 379 PIRSF PIRSF000524 8 377 1.0E-56 T 17-10-2018 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661|Reactome: R-HSA-9033241 VI35_09520 93be4652f93980388ca74e6dfeba9d79 379 Gene3D G3DSA:3.90.1150.10 16 363 7.2E-117 T 17-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VI35_09520 93be4652f93980388ca74e6dfeba9d79 379 Pfam PF00266 Aminotransferase class-V 65 320 5.6E-25 T 17-10-2018 IPR000192 Aminotransferase class V domain VI35_00960 69f4f88c9da81aa8508c7ad686c8de16 352 TIGRFAM TIGR00209 galT_1: galactose-1-phosphate uridylyltransferase 2 344 5.8E-175 T 17-10-2018 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0008108|GO:0008270|GO:0033499 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 VI35_00960 69f4f88c9da81aa8508c7ad686c8de16 352 Pfam PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain 182 343 1.2E-62 T 17-10-2018 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 VI35_00960 69f4f88c9da81aa8508c7ad686c8de16 352 Gene3D G3DSA:3.30.428.10 174 352 1.4E-68 T 17-10-2018 IPR036265 HIT-like superfamily VI35_00960 69f4f88c9da81aa8508c7ad686c8de16 352 PIRSF PIRSF000808 1 339 8.3E-118 T 17-10-2018 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0008108|GO:0008270|GO:0033499 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 VI35_00960 69f4f88c9da81aa8508c7ad686c8de16 352 SUPERFAMILY SSF54197 177 343 3.91E-53 T 17-10-2018 IPR036265 HIT-like superfamily VI35_00960 69f4f88c9da81aa8508c7ad686c8de16 352 Gene3D G3DSA:3.30.428.10 43 173 1.4E-51 T 17-10-2018 IPR036265 HIT-like superfamily VI35_00960 69f4f88c9da81aa8508c7ad686c8de16 352 SUPERFAMILY SSF54197 2 175 1.1E-68 T 17-10-2018 IPR036265 HIT-like superfamily VI35_00960 69f4f88c9da81aa8508c7ad686c8de16 352 Pfam PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain 3 174 7.3E-65 T 17-10-2018 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 VI35_00960 69f4f88c9da81aa8508c7ad686c8de16 352 ProSitePatterns PS00117 Galactose-1-phosphate uridyl transferase family 1 active site signature. 149 166 - T 17-10-2018 IPR019779 Galactose-1-phosphate uridyl transferase, class I His-active site KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 VI35_12135 7bc0dc73533ad88a0c15e6b974cf178b 299 Gene3D G3DSA:3.20.20.100 2 299 5.2E-104 T 17-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily VI35_12135 7bc0dc73533ad88a0c15e6b974cf178b 299 PRINTS PR00069 Aldo-keto reductase signature 144 161 3.3E-6 T 17-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 VI35_12135 7bc0dc73533ad88a0c15e6b974cf178b 299 PRINTS PR00069 Aldo-keto reductase signature 113 131 3.3E-6 T 17-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 VI35_12135 7bc0dc73533ad88a0c15e6b974cf178b 299 SUPERFAMILY SSF51430 8 296 1.7E-71 T 17-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily VI35_12135 7bc0dc73533ad88a0c15e6b974cf178b 299 Pfam PF00248 Aldo/keto reductase family 17 292 6.5E-56 T 17-10-2018 IPR023210 NADP-dependent oxidoreductase domain VI35_07050 da9d8df930daf473d9df9a13e4cee2b6 155 Pfam PF03061 Thioesterase superfamily 20 93 2.6E-20 T 17-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 VI35_07050 da9d8df930daf473d9df9a13e4cee2b6 155 Gene3D G3DSA:3.10.129.10 1 152 2.5E-45 T 17-10-2018 VI35_07050 da9d8df930daf473d9df9a13e4cee2b6 155 SUPERFAMILY SSF54637 1 151 5.9E-44 T 17-10-2018 IPR029069 HotDog domain superfamily VI35_09440 f4b4d690505863cea7cdd1bb878c825b 129 ProSitePatterns PS01000 Succinate dehydrogenase cytochrome b subunit signature 1. 10 34 - T 17-10-2018 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_09440 f4b4d690505863cea7cdd1bb878c825b 129 Gene3D G3DSA:1.20.1300.10 3 129 1.7E-45 T 17-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_09440 f4b4d690505863cea7cdd1bb878c825b 129 PIRSF PIRSF000178 2 129 2.4E-33 T 17-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_09440 f4b4d690505863cea7cdd1bb878c825b 129 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 8 126 2.3E-41 T 17-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_09440 f4b4d690505863cea7cdd1bb878c825b 129 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 6 123 1.9E-31 T 17-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_09440 f4b4d690505863cea7cdd1bb878c825b 129 ProSitePatterns PS01001 Succinate dehydrogenase cytochrome b subunit signature 2. 85 98 - T 17-10-2018 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_09440 f4b4d690505863cea7cdd1bb878c825b 129 SUPERFAMILY SSF81343 5 129 3.05E-36 T 17-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_09670 4a9f8976632a92cc2cc9b4a746f28671 252 Gene3D G3DSA:1.20.1260.10 95 251 1.7E-53 T 17-10-2018 IPR012347 Ferritin-like VI35_09670 4a9f8976632a92cc2cc9b4a746f28671 252 Gene3D G3DSA:1.20.1260.10 2 74 5.5E-16 T 17-10-2018 IPR012347 Ferritin-like VI35_09670 4a9f8976632a92cc2cc9b4a746f28671 252 PIRSF PIRSF020736 1 248 2.0E-85 T 17-10-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 VI35_09670 4a9f8976632a92cc2cc9b4a746f28671 252 SUPERFAMILY SSF47240 5 247 5.19E-71 T 17-10-2018 IPR009078 Ferritin-like superfamily VI35_09670 4a9f8976632a92cc2cc9b4a746f28671 252 Pfam PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) 4 243 8.2E-90 T 17-10-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 VI35_02105 ce4be0f74a81e50b821dce8803ec9697 368 PRINTS PR01010 Flagellar P-ring protein signature 86 105 3.8E-75 T 17-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 VI35_02105 ce4be0f74a81e50b821dce8803ec9697 368 PRINTS PR01010 Flagellar P-ring protein signature 192 210 3.8E-75 T 17-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 VI35_02105 ce4be0f74a81e50b821dce8803ec9697 368 PRINTS PR01010 Flagellar P-ring protein signature 60 75 3.8E-75 T 17-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 VI35_02105 ce4be0f74a81e50b821dce8803ec9697 368 PRINTS PR01010 Flagellar P-ring protein signature 26 41 3.8E-75 T 17-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 VI35_02105 ce4be0f74a81e50b821dce8803ec9697 368 PRINTS PR01010 Flagellar P-ring protein signature 41 56 3.8E-75 T 17-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 VI35_02105 ce4be0f74a81e50b821dce8803ec9697 368 PRINTS PR01010 Flagellar P-ring protein signature 255 267 3.8E-75 T 17-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 VI35_02105 ce4be0f74a81e50b821dce8803ec9697 368 PRINTS PR01010 Flagellar P-ring protein signature 108 125 3.8E-75 T 17-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 VI35_02105 ce4be0f74a81e50b821dce8803ec9697 368 PRINTS PR01010 Flagellar P-ring protein signature 166 184 3.8E-75 T 17-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 VI35_02105 ce4be0f74a81e50b821dce8803ec9697 368 PRINTS PR01010 Flagellar P-ring protein signature 125 143 3.8E-75 T 17-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 VI35_02105 ce4be0f74a81e50b821dce8803ec9697 368 Hamap MF_00416 Flagellar P-ring protein [flgI]. 6 368 35.883 T 17-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 VI35_02105 ce4be0f74a81e50b821dce8803ec9697 368 Pfam PF02119 Flagellar P-ring protein 28 367 4.7E-133 T 17-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 VI35_17015 d72419c7d0eafed807be32a558eeb5b8 303 Pfam PF03466 LysR substrate binding domain 95 298 5.1E-23 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_17015 d72419c7d0eafed807be32a558eeb5b8 303 Gene3D G3DSA:3.40.190.10 90 291 4.8E-56 T 17-10-2018 VI35_17015 d72419c7d0eafed807be32a558eeb5b8 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 2.0E-7 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_17015 d72419c7d0eafed807be32a558eeb5b8 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 2.0E-7 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_17015 d72419c7d0eafed807be32a558eeb5b8 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 2.0E-7 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_17015 d72419c7d0eafed807be32a558eeb5b8 303 SUPERFAMILY SSF53850 90 299 8.87E-36 T 17-10-2018 VI35_17015 d72419c7d0eafed807be32a558eeb5b8 303 SUPERFAMILY SSF46785 2 83 2.01E-20 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_17015 d72419c7d0eafed807be32a558eeb5b8 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 8.9E-18 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_17015 d72419c7d0eafed807be32a558eeb5b8 303 Gene3D G3DSA:3.40.190.10 173 271 4.8E-56 T 17-10-2018 VI35_17015 d72419c7d0eafed807be32a558eeb5b8 303 Gene3D G3DSA:1.10.10.10 1 88 2.9E-32 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_17975 c114721a2cfcec3849a33b97ece93732 397 Gene3D G3DSA:3.40.50.80 258 397 1.7E-33 T 17-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VI35_17975 c114721a2cfcec3849a33b97ece93732 397 Gene3D G3DSA:2.40.30.10 151 256 4.6E-35 T 17-10-2018 VI35_17975 c114721a2cfcec3849a33b97ece93732 397 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 206 213 3.5E-5 T 17-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VI35_17975 c114721a2cfcec3849a33b97ece93732 397 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 359 367 3.5E-5 T 17-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VI35_17975 c114721a2cfcec3849a33b97ece93732 397 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 185 195 3.5E-5 T 17-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VI35_17975 c114721a2cfcec3849a33b97ece93732 397 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 265 284 3.5E-5 T 17-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VI35_17975 c114721a2cfcec3849a33b97ece93732 397 Pfam PF00042 Globin 7 102 7.8E-11 T 17-10-2018 IPR000971 Globin GO:0020037 VI35_17975 c114721a2cfcec3849a33b97ece93732 397 SUPERFAMILY SSF46458 2 143 5.65E-39 T 17-10-2018 IPR009050 Globin-like superfamily VI35_17975 c114721a2cfcec3849a33b97ece93732 397 Gene3D G3DSA:1.10.490.10 1 145 1.8E-51 T 17-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 VI35_17975 c114721a2cfcec3849a33b97ece93732 397 PRINTS PR00410 Phenol hydroxylase reductase family signature 265 284 6.6E-11 T 17-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VI35_17975 c114721a2cfcec3849a33b97ece93732 397 PRINTS PR00410 Phenol hydroxylase reductase family signature 359 367 6.6E-11 T 17-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VI35_17975 c114721a2cfcec3849a33b97ece93732 397 PRINTS PR00410 Phenol hydroxylase reductase family signature 249 258 6.6E-11 T 17-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VI35_17975 c114721a2cfcec3849a33b97ece93732 397 PRINTS PR00410 Phenol hydroxylase reductase family signature 185 197 6.6E-11 T 17-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VI35_17975 c114721a2cfcec3849a33b97ece93732 397 Hamap MF_01252 Flavohemoprotein [hmp]. 1 397 56.191 T 17-10-2018 IPR023950 Flavohemoprotein GO:0008941|GO:0019825|GO:0020037|GO:0051409|GO:0055114|GO:0071949 VI35_17975 c114721a2cfcec3849a33b97ece93732 397 Pfam PF00175 Oxidoreductase NAD-binding domain 266 373 3.1E-14 T 17-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 VI35_17975 c114721a2cfcec3849a33b97ece93732 397 SUPERFAMILY SSF63380 150 255 1.07E-28 T 17-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VI35_17975 c114721a2cfcec3849a33b97ece93732 397 Pfam PF00970 Oxidoreductase FAD-binding domain 158 254 4.3E-10 T 17-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 VI35_17975 c114721a2cfcec3849a33b97ece93732 397 SUPERFAMILY SSF52343 257 394 2.36E-39 T 17-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VI35_01865 0f8a578d0ee9ac8537873f7a9132cdfd 371 Pfam PF03841 L-seryl-tRNA selenium transferase 108 275 4.1E-12 T 17-10-2018 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 VI35_01865 0f8a578d0ee9ac8537873f7a9132cdfd 371 SUPERFAMILY SSF53383 6 367 2.74E-36 T 17-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VI35_01865 0f8a578d0ee9ac8537873f7a9132cdfd 371 Gene3D G3DSA:3.40.640.10 23 277 1.0E-50 T 17-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VI35_01865 0f8a578d0ee9ac8537873f7a9132cdfd 371 TIGRFAM TIGR01437 selA_rel: uncharacterized pyridoxal phosphate-dependent enzyme 4 366 2.7E-184 T 17-10-2018 IPR006337 Pyridoxal phosphate-dependent enzyme, SelA-like KEGG: 00030+4.3.1.29|MetaCyc: PWY-7310 VI35_10965 7cf7f377a705d7647ba5e0059097d07b 474 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 14 443 7.2E-114 T 17-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_10965 7cf7f377a705d7647ba5e0059097d07b 474 TIGRFAM TIGR00780 ccoN: cytochrome c oxidase, cbb3-type, subunit I 9 464 5.3E-228 T 17-10-2018 IPR004677 Cytochrome c oxidase cbb3-type, subunit I GO:0004129|GO:0045278|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 VI35_10965 7cf7f377a705d7647ba5e0059097d07b 474 SUPERFAMILY SSF81442 10 464 1.57E-120 T 17-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_10965 7cf7f377a705d7647ba5e0059097d07b 474 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 204 259 - T 17-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_10965 7cf7f377a705d7647ba5e0059097d07b 474 Gene3D G3DSA:1.20.210.10 2 471 2.7E-204 T 17-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_17835 5420069d54f260b7111e95711833c900 333 Pfam PF16074 Type IV Pilus-assembly protein W 200 324 2.2E-23 T 17-10-2018 IPR032092 Type IV Pilus-assembly protein W GO:0043683 VI35_17835 5420069d54f260b7111e95711833c900 333 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 24 0.0014 T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_17835 5420069d54f260b7111e95711833c900 333 Pfam PF07963 Prokaryotic N-terminal methylation motif 2 24 3.4E-6 T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_05665 647055a99932ab5353ff662f41fea871 316 Gene3D G3DSA:3.30.470.20 198 301 1.5E-39 T 17-10-2018 VI35_05665 647055a99932ab5353ff662f41fea871 316 Gene3D G3DSA:3.40.50.20 2 130 1.7E-49 T 17-10-2018 VI35_05665 647055a99932ab5353ff662f41fea871 316 SUPERFAMILY SSF52440 3 123 6.04E-45 T 17-10-2018 IPR016185 Pre-ATP-grasp domain superfamily VI35_05665 647055a99932ab5353ff662f41fea871 316 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 125 297 1.4E-78 T 17-10-2018 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 VI35_05665 647055a99932ab5353ff662f41fea871 316 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 3 121 8.3E-46 T 17-10-2018 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 VI35_05665 647055a99932ab5353ff662f41fea871 316 SUPERFAMILY SSF56059 124 313 7.73E-59 T 17-10-2018 VI35_05665 647055a99932ab5353ff662f41fea871 316 TIGRFAM TIGR01380 glut_syn: glutathione synthase 3 312 2.0E-136 T 17-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 VI35_05665 647055a99932ab5353ff662f41fea871 316 Gene3D G3DSA:3.30.1490.20 138 197 5.1E-29 T 17-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 VI35_05665 647055a99932ab5353ff662f41fea871 316 Hamap MF_00162 Glutathione synthetase [gshB]. 1 316 176.624 T 17-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 VI35_14270 c63d97f95a03eed6fdf1de774887c509 136 Pfam PF04143 Sulphur transport 25 126 3.4E-8 T 17-10-2018 IPR007272 Sulphur transport domain VI35_01295 458bdd1e32258daf5d9f0c0a0dc148aa 142 SUPERFAMILY SSF54747 3 73 8.11E-30 T 17-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily VI35_01295 458bdd1e32258daf5d9f0c0a0dc148aa 142 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 74 4.0E-15 T 17-10-2018 VI35_01295 458bdd1e32258daf5d9f0c0a0dc148aa 142 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 5.3E-24 T 17-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 VI35_01295 458bdd1e32258daf5d9f0c0a0dc148aa 142 SMART SM00649 9 141 1.5E-83 T 17-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 VI35_01295 458bdd1e32258daf5d9f0c0a0dc148aa 142 SUPERFAMILY SSF46906 68 141 1.57E-25 T 17-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily VI35_01295 458bdd1e32258daf5d9f0c0a0dc148aa 142 Gene3D G3DSA:1.10.10.250 73 141 3.3E-27 T 17-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily VI35_01295 458bdd1e32258daf5d9f0c0a0dc148aa 142 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 30.851 T 17-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 VI35_01295 458bdd1e32258daf5d9f0c0a0dc148aa 142 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 67 8.5E-29 T 17-10-2018 IPR020784 Ribosomal protein L11, N-terminal VI35_01295 458bdd1e32258daf5d9f0c0a0dc148aa 142 Gene3D G3DSA:3.30.1550.10 2 72 2.2E-34 T 17-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily VI35_01295 458bdd1e32258daf5d9f0c0a0dc148aa 142 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 141 7.2E-65 T 17-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_12390 a19de265efd5aaf071e50a883e9bc347 315 Pfam PF02355 Protein export membrane protein 111 291 2.6E-66 T 17-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial VI35_12390 a19de265efd5aaf071e50a883e9bc347 315 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 39 284 5.7E-82 T 17-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 VI35_12390 a19de265efd5aaf071e50a883e9bc347 315 SUPERFAMILY SSF82866 75 294 6.8E-40 T 17-10-2018 VI35_12390 a19de265efd5aaf071e50a883e9bc347 315 Gene3D G3DSA:1.20.1640.10 106 302 2.3E-11 T 17-10-2018 VI35_12390 a19de265efd5aaf071e50a883e9bc347 315 Pfam PF07549 SecD/SecF GG Motif 38 60 1.4E-10 T 17-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site VI35_12390 a19de265efd5aaf071e50a883e9bc347 315 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 99 281 7.6E-53 T 17-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VI35_12390 a19de265efd5aaf071e50a883e9bc347 315 PRINTS PR01755 Bacterial translocase SecF protein signature 232 247 5.5E-31 T 17-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VI35_12390 a19de265efd5aaf071e50a883e9bc347 315 PRINTS PR01755 Bacterial translocase SecF protein signature 38 53 5.5E-31 T 17-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VI35_12390 a19de265efd5aaf071e50a883e9bc347 315 PRINTS PR01755 Bacterial translocase SecF protein signature 200 218 5.5E-31 T 17-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VI35_12390 a19de265efd5aaf071e50a883e9bc347 315 PRINTS PR01755 Bacterial translocase SecF protein signature 152 166 5.5E-31 T 17-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VI35_12390 a19de265efd5aaf071e50a883e9bc347 315 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 11 295 27.933 T 17-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 VI35_14840 24c75b94f95e71e2d800ff587f4de3a0 255 Gene3D G3DSA:3.40.830.10 1 255 1.1E-76 T 17-10-2018 VI35_14840 24c75b94f95e71e2d800ff587f4de3a0 255 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 28 254 1.5E-32 T 17-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 VI35_14840 24c75b94f95e71e2d800ff587f4de3a0 255 PIRSF PIRSF006157 1 255 4.7E-68 T 17-10-2018 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type GO:0008270|GO:0016701|GO:0055114 VI35_14840 24c75b94f95e71e2d800ff587f4de3a0 255 SUPERFAMILY SSF53213 4 255 6.54E-73 T 17-10-2018 VI35_06095 ffbbeeff2d45831e3a27fa2f37597d2c 655 Gene3D G3DSA:3.40.390.10 178 395 1.5E-16 T 17-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 VI35_06095 ffbbeeff2d45831e3a27fa2f37597d2c 655 SUPERFAMILY SSF55486 187 390 1.14E-23 T 17-10-2018 VI35_06095 ffbbeeff2d45831e3a27fa2f37597d2c 655 Pfam PF13583 Metallo-peptidase family M12B Reprolysin-like 183 377 7.8E-28 T 17-10-2018 VI35_03605 8bb0b3b93fb3ab4f1652cee6dc34d1a3 203 Pfam PF02441 Flavoprotein 4 179 1.3E-24 T 17-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 VI35_03605 8bb0b3b93fb3ab4f1652cee6dc34d1a3 203 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 3 200 34.718 T 17-10-2018 IPR004507 Flavin prenyltransferase UbiX-like VI35_03605 8bb0b3b93fb3ab4f1652cee6dc34d1a3 203 Gene3D G3DSA:3.40.50.1950 1 202 5.2E-77 T 17-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 VI35_03605 8bb0b3b93fb3ab4f1652cee6dc34d1a3 203 SUPERFAMILY SSF52507 3 199 1.57E-56 T 17-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 VI35_03605 8bb0b3b93fb3ab4f1652cee6dc34d1a3 203 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 5 198 5.9E-59 T 17-10-2018 IPR004507 Flavin prenyltransferase UbiX-like VI35_11880 d8fe961f6538a38423c72fbd42dc0d19 387 Gene3D G3DSA:3.20.20.450 262 363 7.2E-20 T 17-10-2018 IPR035919 EAL domain superfamily VI35_11880 d8fe961f6538a38423c72fbd42dc0d19 387 Pfam PF00563 EAL domain 267 338 8.0E-18 T 17-10-2018 IPR001633 EAL domain VI35_11880 d8fe961f6538a38423c72fbd42dc0d19 387 Pfam PF12792 CSS motif domain associated with EAL 50 234 1.4E-14 T 17-10-2018 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain VI35_11880 d8fe961f6538a38423c72fbd42dc0d19 387 SUPERFAMILY SSF141868 267 341 1.7E-19 T 17-10-2018 IPR035919 EAL domain superfamily VI35_08840 1b2fda7ce1ddda80ebabc00fb84b3a09 460 Pfam PF13356 Arm DNA-binding domain 83 140 4.9E-9 T 17-10-2018 IPR025166 Integrase, DNA-binding domain VI35_08840 1b2fda7ce1ddda80ebabc00fb84b3a09 460 Gene3D G3DSA:1.10.150.130 147 251 3.7E-9 T 17-10-2018 IPR010998 Integrase/recombinase, N-terminal VI35_08840 1b2fda7ce1ddda80ebabc00fb84b3a09 460 Pfam PF00589 Phage integrase family 258 423 4.2E-16 T 17-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VI35_08840 1b2fda7ce1ddda80ebabc00fb84b3a09 460 SUPERFAMILY SSF56349 151 432 1.41E-52 T 17-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VI35_08840 1b2fda7ce1ddda80ebabc00fb84b3a09 460 Gene3D G3DSA:1.10.443.10 252 441 1.1E-19 T 17-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VI35_08840 1b2fda7ce1ddda80ebabc00fb84b3a09 460 Gene3D G3DSA:3.30.160.390 64 145 3.7E-15 T 17-10-2018 IPR038488 Integrase, DNA-binding domain superfamily VI35_10290 3f7b76f396f5a784b24c6a51b1552985 103 Pfam PF14375 Cysteine-rich CWC 53 95 4.9E-6 T 17-10-2018 IPR032720 Cysteine-rich CWC VI35_10290 3f7b76f396f5a784b24c6a51b1552985 103 Pfam PF06945 Protein of unknown function (DUF1289) 3 45 8.5E-15 T 17-10-2018 IPR010710 Protein of unknown function DUF1289 VI35_09030 5a14592f9bbb18595363b9da177aa63b 133 Gene3D G3DSA:3.30.70.1700 2 131 4.1E-9 T 17-10-2018 IPR038512 GpU-like superfamily VI35_09030 5a14592f9bbb18595363b9da177aa63b 133 SUPERFAMILY SSF143749 4 130 2.88E-10 T 17-10-2018 IPR035934 Phage tail protein-like superfamily VI35_09030 5a14592f9bbb18595363b9da177aa63b 133 Pfam PF06141 Phage minor tail protein U 3 129 1.3E-9 T 17-10-2018 IPR009312 Minor tail protein U-like VI35_14975 11925273678141742bce233a45462330 512 Pfam PF00691 OmpA family 132 233 1.5E-16 T 17-10-2018 IPR006665 OmpA-like domain VI35_14975 11925273678141742bce233a45462330 512 SUPERFAMILY SSF103088 120 238 1.29E-27 T 17-10-2018 IPR036737 OmpA-like domain superfamily VI35_14975 11925273678141742bce233a45462330 512 Gene3D G3DSA:3.30.1330.60 99 245 1.2E-30 T 17-10-2018 IPR036737 OmpA-like domain superfamily VI35_04460 cd91f148b35535e2ac680c8a9197b1bb 167 Pfam PF00588 SpoU rRNA Methylase family 25 156 2.6E-17 T 17-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 VI35_04460 cd91f148b35535e2ac680c8a9197b1bb 167 Gene3D G3DSA:3.40.1280.10 24 166 3.1E-15 T 17-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VI35_04460 cd91f148b35535e2ac680c8a9197b1bb 167 SUPERFAMILY SSF75217 23 162 4.76E-25 T 17-10-2018 IPR029028 Alpha/beta knot methyltransferases VI35_20760 f6692bfa9f5b3e2a2a7c62e0efa3245c 192 TIGRFAM TIGR00624 tag: DNA-3-methyladenine glycosylase I 4 182 1.2E-77 T 17-10-2018 IPR004597 DNA-3-methyladenine glycosylase I GO:0006284|GO:0008725 VI35_20760 f6692bfa9f5b3e2a2a7c62e0efa3245c 192 Pfam PF03352 Methyladenine glycosylase 7 182 5.2E-77 T 17-10-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 VI35_20760 f6692bfa9f5b3e2a2a7c62e0efa3245c 192 Gene3D G3DSA:1.10.340.30 3 188 4.6E-80 T 17-10-2018 VI35_20760 f6692bfa9f5b3e2a2a7c62e0efa3245c 192 SUPERFAMILY SSF48150 3 186 7.85E-77 T 17-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 VI35_16445 9d62ed111efe8e9cd1d165d8b19a721a 119 Pfam PF07578 Lipid A Biosynthesis N-terminal domain 25 96 5.9E-21 T 17-10-2018 IPR011499 Lipid A biosynthesis, N-terminal GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 VI35_16445 9d62ed111efe8e9cd1d165d8b19a721a 119 ProDom PD339292 LIPID A SYNTHASE LIPID-A-DISACCHARIDE TRANSFERASE GLYCOSYLTRANSFERASE BIOSYNTHESIS N-TERMINAL BIOSYNTHESIS SYNTHESIS 20 103 4.0E-38 T 17-10-2018 IPR011499 Lipid A biosynthesis, N-terminal GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 VI35_16445 9d62ed111efe8e9cd1d165d8b19a721a 119 PIRSF PIRSF028440 1 111 1.6E-42 T 17-10-2018 IPR014546 Uncharacterised conserved protein, lipid A biosynthesis VI35_16445 9d62ed111efe8e9cd1d165d8b19a721a 119 SMART SM01259 25 98 1.5E-22 T 17-10-2018 IPR011499 Lipid A biosynthesis, N-terminal GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 VI35_06355 57689f771146d552818daf492f583c0b 488 Pfam PF00202 Aminotransferase class-III 89 483 1.9E-127 T 17-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VI35_06355 57689f771146d552818daf492f583c0b 488 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 304 341 - T 17-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VI35_06355 57689f771146d552818daf492f583c0b 488 Gene3D G3DSA:3.40.640.10 123 392 1.9E-169 T 17-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VI35_06355 57689f771146d552818daf492f583c0b 488 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 75 483 6.7E-181 T 17-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 VI35_06355 57689f771146d552818daf492f583c0b 488 SUPERFAMILY SSF53383 67 484 1.54E-129 T 17-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VI35_06355 57689f771146d552818daf492f583c0b 488 Hamap MF_00834 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [bioA]. 63 486 50.048 T 17-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 VI35_06355 57689f771146d552818daf492f583c0b 488 PIRSF PIRSF000521 88 485 1.4E-26 T 17-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VI35_06355 57689f771146d552818daf492f583c0b 488 Gene3D G3DSA:3.90.1150.10 73 475 1.9E-169 T 17-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VI35_00545 2493abfe200b25394d97f532a8919f9f 329 Pfam PF01636 Phosphotransferase enzyme family 36 265 1.0E-42 T 17-10-2018 IPR002575 Aminoglycoside phosphotransferase VI35_00545 2493abfe200b25394d97f532a8919f9f 329 Gene3D G3DSA:1.20.1270.170 150 308 7.0E-126 T 17-10-2018 VI35_00545 2493abfe200b25394d97f532a8919f9f 329 Gene3D G3DSA:1.10.510.10 61 259 7.0E-126 T 17-10-2018 VI35_00545 2493abfe200b25394d97f532a8919f9f 329 Gene3D G3DSA:3.30.200.70 14 109 7.0E-126 T 17-10-2018 VI35_00545 2493abfe200b25394d97f532a8919f9f 329 SUPERFAMILY SSF56112 5 329 5.54E-90 T 17-10-2018 IPR011009 Protein kinase-like domain superfamily VI35_00545 2493abfe200b25394d97f532a8919f9f 329 Hamap MF_01497 Stress response kinase A [srkA]. 5 319 47.057 T 17-10-2018 IPR032882 SrkA/RdoA protein kinase GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 VI35_00215 1e1ec353a59caa60d127f7d0bd3f3cb9 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 5.0E-6 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_00215 1e1ec353a59caa60d127f7d0bd3f3cb9 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 5.0E-6 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_00215 1e1ec353a59caa60d127f7d0bd3f3cb9 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 5.0E-6 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_00215 1e1ec353a59caa60d127f7d0bd3f3cb9 324 Gene3D G3DSA:1.10.10.10 1 91 3.2E-33 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_00215 1e1ec353a59caa60d127f7d0bd3f3cb9 324 Gene3D G3DSA:3.40.190.10 92 291 4.7E-40 T 17-10-2018 VI35_00215 1e1ec353a59caa60d127f7d0bd3f3cb9 324 SUPERFAMILY SSF46785 5 88 3.54E-21 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_00215 1e1ec353a59caa60d127f7d0bd3f3cb9 324 SUPERFAMILY SSF53850 92 299 2.35E-29 T 17-10-2018 VI35_00215 1e1ec353a59caa60d127f7d0bd3f3cb9 324 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 68 2.2E-17 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_00215 1e1ec353a59caa60d127f7d0bd3f3cb9 324 Pfam PF03466 LysR substrate binding domain 97 298 3.1E-17 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_00215 1e1ec353a59caa60d127f7d0bd3f3cb9 324 Gene3D G3DSA:3.40.190.10 175 272 4.7E-40 T 17-10-2018 VI35_20325 06e77d78cf619a67daaf6635610b66d3 301 SUPERFAMILY SSF53850 90 291 2.35E-49 T 17-10-2018 VI35_20325 06e77d78cf619a67daaf6635610b66d3 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 63 8.5E-17 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_20325 06e77d78cf619a67daaf6635610b66d3 301 Gene3D G3DSA:1.10.10.10 5 88 5.5E-25 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_20325 06e77d78cf619a67daaf6635610b66d3 301 Gene3D G3DSA:3.40.190.290 91 287 1.5E-69 T 17-10-2018 VI35_20325 06e77d78cf619a67daaf6635610b66d3 301 Pfam PF03466 LysR substrate binding domain 89 288 2.1E-49 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_20325 06e77d78cf619a67daaf6635610b66d3 301 SUPERFAMILY SSF46785 6 85 2.4E-20 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_12320 97375f4193edc2ad150f36bbb6aa507a 433 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 112 424 8.1E-94 T 17-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 VI35_12320 97375f4193edc2ad150f36bbb6aa507a 433 PIRSF PIRSF036388 1 433 9.4E-182 T 17-10-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 VI35_12320 97375f4193edc2ad150f36bbb6aa507a 433 Gene3D G3DSA:3.40.630.10 93 433 4.3E-98 T 17-10-2018 VI35_12320 97375f4193edc2ad150f36bbb6aa507a 433 SUPERFAMILY SSF53187 106 430 1.51E-92 T 17-10-2018 VI35_12320 97375f4193edc2ad150f36bbb6aa507a 433 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 278 285 - T 17-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 VI35_12320 97375f4193edc2ad150f36bbb6aa507a 433 Pfam PF12404 Peptidase 5 83 4.3E-28 T 17-10-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 VI35_12320 97375f4193edc2ad150f36bbb6aa507a 433 PRINTS PR00481 Cytosol aminopeptidase signature 302 317 5.2E-44 T 17-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VI35_12320 97375f4193edc2ad150f36bbb6aa507a 433 PRINTS PR00481 Cytosol aminopeptidase signature 193 210 5.2E-44 T 17-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VI35_12320 97375f4193edc2ad150f36bbb6aa507a 433 PRINTS PR00481 Cytosol aminopeptidase signature 252 273 5.2E-44 T 17-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VI35_12320 97375f4193edc2ad150f36bbb6aa507a 433 PRINTS PR00481 Cytosol aminopeptidase signature 215 236 5.2E-44 T 17-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VI35_12320 97375f4193edc2ad150f36bbb6aa507a 433 PRINTS PR00481 Cytosol aminopeptidase signature 274 294 5.2E-44 T 17-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VI35_20245 3c549a618c8db9d46314df0b1b4e280e 218 Pfam PF11769 Protein of unknown function (DUF3313) 13 206 1.5E-43 T 17-10-2018 IPR021747 Protein of unknown function DUF3313 VI35_07085 e8cc08c2bcda399997030d4247ba523d 389 Pfam PF07690 Major Facilitator Superfamily 9 321 3.5E-42 T 17-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VI35_07085 e8cc08c2bcda399997030d4247ba523d 389 Gene3D G3DSA:1.20.1250.20 199 385 6.3E-22 T 17-10-2018 VI35_07085 e8cc08c2bcda399997030d4247ba523d 389 Gene3D G3DSA:1.20.1250.20 2 198 1.5E-26 T 17-10-2018 VI35_07085 e8cc08c2bcda399997030d4247ba523d 389 SUPERFAMILY SSF103473 3 376 1.7E-63 T 17-10-2018 IPR036259 MFS transporter superfamily VI35_18690 fe06b4b578e5a477fa0122f9055caf54 667 Pfam PF04632 Fusaric acid resistance protein family 18 660 4.3E-177 T 17-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 VI35_03010 02baa98979507f315f6ee8dcc08c0af8 877 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 1 877 18.367 T 17-10-2018 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 VI35_03010 02baa98979507f315f6ee8dcc08c0af8 877 SUPERFAMILY SSF51621 6 877 0.0 T 17-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 VI35_03010 02baa98979507f315f6ee8dcc08c0af8 877 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 134 145 - T 17-10-2018 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 VI35_03010 02baa98979507f315f6ee8dcc08c0af8 877 Gene3D G3DSA:1.20.1440.90 303 386 2.2E-22 T 17-10-2018 VI35_03010 02baa98979507f315f6ee8dcc08c0af8 877 Pfam PF00311 Phosphoenolpyruvate carboxylase 128 877 1.3E-284 T 17-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 VI35_03010 02baa98979507f315f6ee8dcc08c0af8 877 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 706 732 3.1E-65 T 17-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 VI35_03010 02baa98979507f315f6ee8dcc08c0af8 877 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 133 146 3.1E-65 T 17-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 VI35_03010 02baa98979507f315f6ee8dcc08c0af8 877 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 245 260 3.1E-65 T 17-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 VI35_03010 02baa98979507f315f6ee8dcc08c0af8 877 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 383 403 3.1E-65 T 17-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 VI35_03010 02baa98979507f315f6ee8dcc08c0af8 877 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 532 552 3.1E-65 T 17-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 VI35_03010 02baa98979507f315f6ee8dcc08c0af8 877 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 574 603 3.1E-65 T 17-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 VI35_03010 02baa98979507f315f6ee8dcc08c0af8 877 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 186 202 3.1E-65 T 17-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 VI35_03010 02baa98979507f315f6ee8dcc08c0af8 877 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 534 546 - T 17-10-2018 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 VI35_02225 e782130f7ad95cae48652e012a5bc330 494 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 21 486 2.2E-166 T 17-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 VI35_02225 e782130f7ad95cae48652e012a5bc330 494 Pfam PF02875 Mur ligase family, glutamate ligase domain 334 419 6.9E-23 T 17-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 VI35_02225 e782130f7ad95cae48652e012a5bc330 494 Gene3D G3DSA:3.40.1190.10 101 337 4.8E-80 T 17-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 VI35_02225 e782130f7ad95cae48652e012a5bc330 494 Gene3D G3DSA:3.90.190.20 344 493 9.0E-57 T 17-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 VI35_02225 e782130f7ad95cae48652e012a5bc330 494 SUPERFAMILY SSF63418 5 100 1.7E-23 T 17-10-2018 IPR035911 MurE/MurF, N-terminal VI35_02225 e782130f7ad95cae48652e012a5bc330 494 Gene3D G3DSA:3.40.1390.10 3 100 2.3E-27 T 17-10-2018 VI35_02225 e782130f7ad95cae48652e012a5bc330 494 Pfam PF08245 Mur ligase middle domain 110 313 9.7E-48 T 17-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 VI35_02225 e782130f7ad95cae48652e012a5bc330 494 Pfam PF01225 Mur ligase family, catalytic domain 25 98 4.9E-14 T 17-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 VI35_02225 e782130f7ad95cae48652e012a5bc330 494 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 4 486 34.285 T 17-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 VI35_02225 e782130f7ad95cae48652e012a5bc330 494 SUPERFAMILY SSF53623 101 333 1.7E-74 T 17-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 VI35_02225 e782130f7ad95cae48652e012a5bc330 494 SUPERFAMILY SSF53244 334 489 7.98E-50 T 17-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 VI35_02275 cb8d9c5fcea65b1ad53a64a0326b1e26 307 SUPERFAMILY SSF54211 135 279 1.74E-51 T 17-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VI35_02275 cb8d9c5fcea65b1ad53a64a0326b1e26 307 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 2 281 45.795 T 17-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 VI35_02275 cb8d9c5fcea65b1ad53a64a0326b1e26 307 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 4 277 3.2E-108 T 17-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 VI35_02275 cb8d9c5fcea65b1ad53a64a0326b1e26 307 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 293 8.7E-133 T 17-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 VI35_02275 cb8d9c5fcea65b1ad53a64a0326b1e26 307 Gene3D G3DSA:3.30.1700.10 129 307 9.5E-67 T 17-10-2018 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 VI35_02275 cb8d9c5fcea65b1ad53a64a0326b1e26 307 Gene3D G3DSA:3.30.230.20 1 128 4.2E-51 T 17-10-2018 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 VI35_02275 cb8d9c5fcea65b1ad53a64a0326b1e26 307 SUPERFAMILY SSF54211 3 126 1.21E-42 T 17-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VI35_19160 9d484cf2dde82aaf57c2712fa0afbe46 118 Gene3D G3DSA:1.10.10.10 3 107 4.5E-36 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_19160 9d484cf2dde82aaf57c2712fa0afbe46 118 Pfam PF01638 HxlR-like helix-turn-helix 14 99 8.3E-29 T 17-10-2018 IPR002577 Helix-turn-helix, HxlR type VI35_19160 9d484cf2dde82aaf57c2712fa0afbe46 118 SUPERFAMILY SSF46785 3 99 2.68E-30 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_06470 ebfcde3ee9b656c429160d06b7c47bbe 321 Pfam PF14397 Sugar-transfer associated ATP-grasp 24 297 6.9E-111 T 17-10-2018 IPR039523 Alpha-L-glutamate ligase-related protein, ATP-grasp domain KEGG: 00270+6.3.2.2+6.3.2.3|KEGG: 00480+6.3.2.2+6.3.2.3|MetaCyc: PWY-6840|MetaCyc: PWY-7255 VI35_06470 ebfcde3ee9b656c429160d06b7c47bbe 321 SUPERFAMILY SSF56059 43 282 1.04E-15 T 17-10-2018 VI35_06470 ebfcde3ee9b656c429160d06b7c47bbe 321 TIGRFAM TIGR02291 rimK_rel_E_lig: alpha-L-glutamate ligase homolog 7 317 6.0E-142 T 17-10-2018 IPR011758 Alpha-L-glutamate ligase-related protein VI35_14665 cbf76178b543433f54c7555ccc861ca1 123 Pfam PF16358 RcsF lipoprotein 34 120 1.0E-16 T 17-10-2018 IPR030852 Outer membrane lipoprotein RcsF GO:0009279|GO:0035556 VI35_14665 cbf76178b543433f54c7555ccc861ca1 123 Gene3D G3DSA:3.30.110.70 22 122 2.3E-28 T 17-10-2018 VI35_08475 a8c98cfdbf99d91efe5fad1a49a5eb37 476 Pfam PF12486 Type VI secretion system, EvfB, or VasL 324 470 3.3E-49 T 17-10-2018 IPR021069 ImpA, C-terminal VI35_08475 a8c98cfdbf99d91efe5fad1a49a5eb37 476 Pfam PF06812 ImpA, N-terminal, type VI secretion system 10 115 1.8E-22 T 17-10-2018 IPR010657 ImpA, N-terminal VI35_05655 53dc339ace125c39284e0d817b4415ca 140 Pfam PF03652 Holliday junction resolvase 5 136 3.9E-39 T 17-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 VI35_05655 53dc339ace125c39284e0d817b4415ca 140 Gene3D G3DSA:3.30.420.140 3 139 7.2E-43 T 17-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 VI35_05655 53dc339ace125c39284e0d817b4415ca 140 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 7 136 6.4E-51 T 17-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 VI35_05655 53dc339ace125c39284e0d817b4415ca 140 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 4 139 25.405 T 17-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 VI35_05655 53dc339ace125c39284e0d817b4415ca 140 SMART SM00732 4 104 3.8E-39 T 17-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 VI35_05655 53dc339ace125c39284e0d817b4415ca 140 SUPERFAMILY SSF53098 5 137 1.44E-40 T 17-10-2018 IPR012337 Ribonuclease H-like superfamily VI35_10695 b91284cfd1be6df3c969ce88fa8d6b4c 376 TIGRFAM TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase 18 348 3.8E-103 T 17-10-2018 IPR017582 tRNA 2-selenouridine/geranyl-2-thiouridine synthase GO:0016785|GO:0043828|GO:0070329 VI35_10695 b91284cfd1be6df3c969ce88fa8d6b4c 376 SUPERFAMILY SSF52821 14 156 1.87E-18 T 17-10-2018 IPR036873 Rhodanese-like domain superfamily VI35_10695 b91284cfd1be6df3c969ce88fa8d6b4c 376 SMART SM00450 4 134 8.6E-11 T 17-10-2018 IPR001763 Rhodanese-like domain VI35_10695 b91284cfd1be6df3c969ce88fa8d6b4c 376 Gene3D G3DSA:3.40.250.10 10 135 4.5E-30 T 17-10-2018 IPR036873 Rhodanese-like domain superfamily VI35_10695 b91284cfd1be6df3c969ce88fa8d6b4c 376 Hamap MF_01622 tRNA 2-selenouridine synthase [selU]. 3 364 50.301 T 17-10-2018 IPR017582 tRNA 2-selenouridine/geranyl-2-thiouridine synthase GO:0016785|GO:0043828|GO:0070329 VI35_14500 0be52da39b85d8968f907dbfad124891 246 SUPERFAMILY SSF53474 25 242 2.56E-33 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_14500 0be52da39b85d8968f907dbfad124891 246 Pfam PF01738 Dienelactone hydrolase family 36 243 3.7E-31 T 17-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 VI35_14500 0be52da39b85d8968f907dbfad124891 246 Gene3D G3DSA:3.40.50.1820 12 245 2.2E-44 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_15875 d286cf04e208ce40dd0a35519fe6b689 155 Gene3D G3DSA:1.20.1260.10 1 155 2.1E-51 T 17-10-2018 IPR012347 Ferritin-like VI35_15875 d286cf04e208ce40dd0a35519fe6b689 155 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 37 53 2.6E-12 T 17-10-2018 IPR002177 DNA-binding protein Dps VI35_15875 d286cf04e208ce40dd0a35519fe6b689 155 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 132 150 2.6E-12 T 17-10-2018 IPR002177 DNA-binding protein Dps VI35_15875 d286cf04e208ce40dd0a35519fe6b689 155 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 61 77 2.6E-12 T 17-10-2018 IPR002177 DNA-binding protein Dps VI35_15875 d286cf04e208ce40dd0a35519fe6b689 155 ProSitePatterns PS00819 Dps protein family signature 2. 63 77 - T 17-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 VI35_15875 d286cf04e208ce40dd0a35519fe6b689 155 Pfam PF00210 Ferritin-like domain 17 154 1.9E-26 T 17-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 VI35_15875 d286cf04e208ce40dd0a35519fe6b689 155 ProSitePatterns PS00818 Dps protein family signature 1. 37 53 - T 17-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 VI35_15875 d286cf04e208ce40dd0a35519fe6b689 155 SUPERFAMILY SSF47240 2 154 2.95E-44 T 17-10-2018 IPR009078 Ferritin-like superfamily VI35_15875 d286cf04e208ce40dd0a35519fe6b689 155 PIRSF PIRSF005900 1 155 1.8E-43 T 17-10-2018 IPR002177 DNA-binding protein Dps VI35_18170 0390873edd96be81f3fb05ce47dd52df 153 Gene3D G3DSA:3.40.1550.10 1 153 2.1E-43 T 17-10-2018 IPR028976 CheC-like superfamily VI35_18170 0390873edd96be81f3fb05ce47dd52df 153 Pfam PF13690 Chemotaxis phosphatase CheX 42 140 1.4E-22 T 17-10-2018 IPR028051 Chemotaxis phosphatase CheX-like domain VI35_18170 0390873edd96be81f3fb05ce47dd52df 153 SUPERFAMILY SSF103039 1 153 8.76E-36 T 17-10-2018 IPR028976 CheC-like superfamily VI35_12045 4f1acd0942ef29bb22c9d41f030ad072 94 Pfam PF00216 Bacterial DNA-binding protein 1 91 1.3E-30 T 17-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VI35_12045 4f1acd0942ef29bb22c9d41f030ad072 94 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 47 66 - T 17-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 VI35_12045 4f1acd0942ef29bb22c9d41f030ad072 94 SUPERFAMILY SSF47729 1 91 7.07E-30 T 17-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 VI35_12045 4f1acd0942ef29bb22c9d41f030ad072 94 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 1 93 1.2E-47 T 17-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 VI35_12045 4f1acd0942ef29bb22c9d41f030ad072 94 Gene3D G3DSA:4.10.520.10 1 93 1.4E-35 T 17-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 VI35_12045 4f1acd0942ef29bb22c9d41f030ad072 94 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 1.2E-18 T 17-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VI35_12045 4f1acd0942ef29bb22c9d41f030ad072 94 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 1.2E-18 T 17-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VI35_12045 4f1acd0942ef29bb22c9d41f030ad072 94 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 1.2E-18 T 17-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VI35_12045 4f1acd0942ef29bb22c9d41f030ad072 94 Hamap MF_00381 Integration host factor subunit beta [ihfB]. 1 94 29.933 T 17-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 VI35_12045 4f1acd0942ef29bb22c9d41f030ad072 94 SMART SM00411 1 91 3.2E-41 T 17-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VI35_11630 273de981937ac7112698e1bb355f13ef 416 Hamap MF_01582 Serine/threonine transporter SstT [sstT]. 4 405 36.776 T 17-10-2018 IPR023025 Serine/threonine transporter SstT GO:0015293|GO:0015826|GO:0032329 VI35_11630 273de981937ac7112698e1bb355f13ef 416 SUPERFAMILY SSF118215 16 397 1.57E-95 T 17-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 VI35_11630 273de981937ac7112698e1bb355f13ef 416 Gene3D G3DSA:1.10.3860.10 7 406 6.5E-68 T 17-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 VI35_11630 273de981937ac7112698e1bb355f13ef 416 Pfam PF00375 Sodium:dicarboxylate symporter family 16 395 1.9E-61 T 17-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 VI35_11630 273de981937ac7112698e1bb355f13ef 416 PRINTS PR00173 Glutamate-aspartate symporter signature 288 314 4.8E-14 T 17-10-2018 VI35_11630 273de981937ac7112698e1bb355f13ef 416 PRINTS PR00173 Glutamate-aspartate symporter signature 186 205 4.8E-14 T 17-10-2018 VI35_11630 273de981937ac7112698e1bb355f13ef 416 PRINTS PR00173 Glutamate-aspartate symporter signature 323 342 4.8E-14 T 17-10-2018 VI35_11630 273de981937ac7112698e1bb355f13ef 416 PRINTS PR00173 Glutamate-aspartate symporter signature 14 34 4.8E-14 T 17-10-2018 VI35_09880 c932e35f04230c9fa849fb314d3f2008 248 SUPERFAMILY SSF52540 26 243 4.33E-67 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_09880 c932e35f04230c9fa849fb314d3f2008 248 Pfam PF00005 ABC transporter 46 194 4.3E-32 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_09880 c932e35f04230c9fa849fb314d3f2008 248 ProSitePatterns PS00211 ABC transporters family signature. 167 181 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_09880 c932e35f04230c9fa849fb314d3f2008 248 Gene3D G3DSA:3.40.50.300 24 247 3.5E-62 T 17-10-2018 VI35_09880 c932e35f04230c9fa849fb314d3f2008 248 SMART SM00382 55 245 1.9E-11 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_09880 c932e35f04230c9fa849fb314d3f2008 248 TIGRFAM TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein 26 244 1.4E-98 T 17-10-2018 IPR011924 Lipoprotein releasing system, ATP-binding protein GO:0005524|GO:0016020|GO:0044873 VI35_18825 62b603ca8b34912443b3a605ed68fac4 185 Gene3D G3DSA:1.20.950.20 2 160 9.9E-11 T 17-10-2018 VI35_18825 62b603ca8b34912443b3a605ed68fac4 185 SUPERFAMILY SSF81342 6 175 1.57E-34 T 17-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 VI35_18825 62b603ca8b34912443b3a605ed68fac4 185 Pfam PF01292 Prokaryotic cytochrome b561 9 170 8.6E-24 T 17-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 VI35_12775 8c81365cafc7e072a8311142743979ba 267 Gene3D G3DSA:3.30.70.1070 184 264 9.1E-9 T 17-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 VI35_12775 8c81365cafc7e072a8311142743979ba 267 Pfam PF05036 Sporulation related domain 188 263 6.8E-13 T 17-10-2018 IPR007730 Sporulation-like domain GO:0042834 VI35_12775 8c81365cafc7e072a8311142743979ba 267 SUPERFAMILY SSF110997 188 265 3.01E-14 T 17-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 VI35_12065 aa3885701ef1fddeb05fa148cef143d1 300 Gene3D G3DSA:3.40.190.290 90 293 2.9E-45 T 17-10-2018 VI35_12065 aa3885701ef1fddeb05fa148cef143d1 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.2E-21 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_12065 aa3885701ef1fddeb05fa148cef143d1 300 SUPERFAMILY SSF46785 1 110 1.41E-26 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_12065 aa3885701ef1fddeb05fa148cef143d1 300 Pfam PF03466 LysR substrate binding domain 87 288 3.5E-42 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_12065 aa3885701ef1fddeb05fa148cef143d1 300 Gene3D G3DSA:1.10.10.10 1 88 4.7E-29 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_12065 aa3885701ef1fddeb05fa148cef143d1 300 SUPERFAMILY SSF53850 90 288 1.32E-41 T 17-10-2018 VI35_12065 aa3885701ef1fddeb05fa148cef143d1 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 7.0E-10 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_12065 aa3885701ef1fddeb05fa148cef143d1 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 7.0E-10 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_12065 aa3885701ef1fddeb05fa148cef143d1 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 7.0E-10 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_19335 8005d6c80f720c40b78338c1fbd20e4d 356 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 42 132 7.2E-7 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_19335 8005d6c80f720c40b78338c1fbd20e4d 356 SMART SM00331 161 350 3.6E-8 T 17-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 VI35_19335 8005d6c80f720c40b78338c1fbd20e4d 356 SUPERFAMILY SSF81606 176 350 1.96E-12 T 17-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 VI35_19335 8005d6c80f720c40b78338c1fbd20e4d 356 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 188 350 4.6E-11 T 17-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 VI35_19335 8005d6c80f720c40b78338c1fbd20e4d 356 SUPERFAMILY SSF55874 31 132 2.33E-14 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_19335 8005d6c80f720c40b78338c1fbd20e4d 356 Gene3D G3DSA:3.60.40.10 161 349 1.5E-35 T 17-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 VI35_19335 8005d6c80f720c40b78338c1fbd20e4d 356 SMART SM00387 39 139 2.3E-5 T 17-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VI35_19335 8005d6c80f720c40b78338c1fbd20e4d 356 Gene3D G3DSA:3.30.565.10 19 136 1.0E-12 T 17-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VI35_10125 feb229d8f5359d7e9e5244e0478117fc 477 Gene3D G3DSA:3.20.20.80 1 476 4.5E-179 T 17-10-2018 VI35_10125 feb229d8f5359d7e9e5244e0478117fc 477 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 13 27 - T 17-10-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site VI35_10125 feb229d8f5359d7e9e5244e0478117fc 477 PRINTS PR00131 Glycosyl hydrolase family 1 signature 292 306 1.2E-17 T 17-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 VI35_10125 feb229d8f5359d7e9e5244e0478117fc 477 PRINTS PR00131 Glycosyl hydrolase family 1 signature 416 433 1.2E-17 T 17-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 VI35_10125 feb229d8f5359d7e9e5244e0478117fc 477 PRINTS PR00131 Glycosyl hydrolase family 1 signature 395 406 1.2E-17 T 17-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 VI35_10125 feb229d8f5359d7e9e5244e0478117fc 477 PRINTS PR00131 Glycosyl hydrolase family 1 signature 440 452 1.2E-17 T 17-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 VI35_10125 feb229d8f5359d7e9e5244e0478117fc 477 PRINTS PR00131 Glycosyl hydrolase family 1 signature 374 382 1.2E-17 T 17-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 VI35_10125 feb229d8f5359d7e9e5244e0478117fc 477 Pfam PF00232 Glycosyl hydrolase family 1 7 472 9.1E-173 T 17-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 VI35_10125 feb229d8f5359d7e9e5244e0478117fc 477 SUPERFAMILY SSF51445 8 475 2.98E-170 T 17-10-2018 IPR017853 Glycoside hydrolase superfamily VI35_20975 a68e913e3dd9c552b1f90bec25f1e380 250 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 8 224 3.8E-76 T 17-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 VI35_20975 a68e913e3dd9c552b1f90bec25f1e380 250 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 153 181 1.7E-50 T 17-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 VI35_20975 a68e913e3dd9c552b1f90bec25f1e380 250 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 102 128 1.7E-50 T 17-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 VI35_20975 a68e913e3dd9c552b1f90bec25f1e380 250 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 7 34 1.7E-50 T 17-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 VI35_20975 a68e913e3dd9c552b1f90bec25f1e380 250 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 84 102 1.7E-50 T 17-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 VI35_20975 a68e913e3dd9c552b1f90bec25f1e380 250 Pfam PF00902 Sec-independent protein translocase protein (TatC) 11 220 1.9E-65 T 17-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 VI35_20975 a68e913e3dd9c552b1f90bec25f1e380 250 ProSitePatterns PS01218 TatC family signature. 153 172 - T 17-10-2018 IPR019820 Sec-independent periplasmic protein translocase, conserved site VI35_20975 a68e913e3dd9c552b1f90bec25f1e380 250 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 3 238 16.046 T 17-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 VI35_06000 481cbded6e3aa9aa00fefce877c469b7 264 Pfam PF13614 AAA domain 5 179 1.3E-49 T 17-10-2018 IPR025669 AAA domain VI35_06000 481cbded6e3aa9aa00fefce877c469b7 264 Gene3D G3DSA:3.40.50.300 3 262 3.9E-66 T 17-10-2018 VI35_06000 481cbded6e3aa9aa00fefce877c469b7 264 SUPERFAMILY SSF52540 3 253 1.78E-58 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_11030 4b203b24ca8e907514eea186ef8d91f3 191 Gene3D G3DSA:3.40.30.10 1 73 5.0E-19 T 17-10-2018 VI35_11030 4b203b24ca8e907514eea186ef8d91f3 191 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 62 3.4E-12 T 17-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 VI35_11030 4b203b24ca8e907514eea186ef8d91f3 191 SUPERFAMILY SSF52833 1 71 4.67E-18 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_11030 4b203b24ca8e907514eea186ef8d91f3 191 SUPERFAMILY SSF47616 69 190 2.09E-21 T 17-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily VI35_11030 4b203b24ca8e907514eea186ef8d91f3 191 Gene3D G3DSA:1.20.1050.10 74 182 7.7E-40 T 17-10-2018 VI35_11030 4b203b24ca8e907514eea186ef8d91f3 191 Pfam PF00043 Glutathione S-transferase, C-terminal domain 110 183 1.1E-8 T 17-10-2018 IPR004046 Glutathione S-transferase, C-terminal VI35_10635 2e29e04ebe9e29dc9be668afe768ae6b 109 PIRSF PIRSF004555 3 109 1.4E-39 T 17-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family VI35_10635 2e29e04ebe9e29dc9be668afe768ae6b 109 Gene3D G3DSA:3.30.1310.10 1 109 1.3E-47 T 17-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily VI35_10635 2e29e04ebe9e29dc9be668afe768ae6b 109 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 1 105 2.5E-38 T 17-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family VI35_10635 2e29e04ebe9e29dc9be668afe768ae6b 109 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 5 98 23.513 T 17-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family VI35_10635 2e29e04ebe9e29dc9be668afe768ae6b 109 SUPERFAMILY SSF82607 11 103 4.19E-36 T 17-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily VI35_10635 2e29e04ebe9e29dc9be668afe768ae6b 109 Pfam PF02575 YbaB/EbfC DNA-binding family 11 100 2.3E-35 T 17-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family VI35_17680 9857c90844a2067d4a0447b3f8ba8c3d 480 ProSitePatterns PS00163 Fumarate lyases signature. 322 331 - T 17-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 VI35_17680 9857c90844a2067d4a0447b3f8ba8c3d 480 Gene3D G3DSA:1.10.275.10 8 144 1.9E-56 T 17-10-2018 IPR024083 Fumarase/histidase, N-terminal VI35_17680 9857c90844a2067d4a0447b3f8ba8c3d 480 Pfam PF10415 Fumarase C C-terminus 413 465 1.7E-17 T 17-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 VI35_17680 9857c90844a2067d4a0447b3f8ba8c3d 480 Gene3D G3DSA:1.20.200.10 145 412 4.1E-111 T 17-10-2018 VI35_17680 9857c90844a2067d4a0447b3f8ba8c3d 480 TIGRFAM TIGR00839 aspA: aspartate ammonia-lyase 8 475 1.8E-242 T 17-10-2018 IPR004708 Aspartate ammonia-lyase GO:0006531|GO:0008797 KEGG: 00250+4.3.1.1 VI35_17680 9857c90844a2067d4a0447b3f8ba8c3d 480 PRINTS PR00145 Argininosuccinate lyase family signature 139 161 3.7E-5 T 17-10-2018 VI35_17680 9857c90844a2067d4a0447b3f8ba8c3d 480 PRINTS PR00145 Argininosuccinate lyase family signature 322 338 3.7E-5 T 17-10-2018 VI35_17680 9857c90844a2067d4a0447b3f8ba8c3d 480 PRINTS PR00145 Argininosuccinate lyase family signature 180 200 3.7E-5 T 17-10-2018 VI35_17680 9857c90844a2067d4a0447b3f8ba8c3d 480 Pfam PF00206 Lyase 15 347 4.9E-101 T 17-10-2018 IPR022761 Fumarate lyase, N-terminal VI35_17680 9857c90844a2067d4a0447b3f8ba8c3d 480 SUPERFAMILY SSF48557 5 459 5.89E-139 T 17-10-2018 IPR008948 L-Aspartase-like GO:0003824 VI35_17680 9857c90844a2067d4a0447b3f8ba8c3d 480 PRINTS PR00149 Fumarate lyase superfamily signature 322 338 2.4E-27 T 17-10-2018 IPR000362 Fumarate lyase family VI35_17680 9857c90844a2067d4a0447b3f8ba8c3d 480 PRINTS PR00149 Fumarate lyase superfamily signature 140 158 2.4E-27 T 17-10-2018 IPR000362 Fumarate lyase family VI35_17680 9857c90844a2067d4a0447b3f8ba8c3d 480 PRINTS PR00149 Fumarate lyase superfamily signature 276 303 2.4E-27 T 17-10-2018 IPR000362 Fumarate lyase family VI35_17680 9857c90844a2067d4a0447b3f8ba8c3d 480 PRINTS PR00149 Fumarate lyase superfamily signature 185 203 2.4E-27 T 17-10-2018 IPR000362 Fumarate lyase family VI35_17680 9857c90844a2067d4a0447b3f8ba8c3d 480 Gene3D G3DSA:1.10.40.30 413 462 5.3E-28 T 17-10-2018 VI35_12890 b20d529aa64079e6d099073b5cc43222 231 Pfam PF03374 Phage antirepressor protein KilAC domain 118 221 3.6E-26 T 17-10-2018 IPR005039 Antirepressor protein, C-terminal GO:0003677 VI35_12890 b20d529aa64079e6d099073b5cc43222 231 Pfam PF09669 Phage regulatory protein Rha (Phage_pRha) 13 91 1.6E-18 T 17-10-2018 IPR014054 Bacteriophage regulatory protein, Rha family VI35_15755 11bc88299277b50d96c2c3f4f8dd86e1 183 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 133 148 3.1E-11 T 17-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 VI35_15755 11bc88299277b50d96c2c3f4f8dd86e1 183 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 34 49 3.1E-11 T 17-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 VI35_15755 11bc88299277b50d96c2c3f4f8dd86e1 183 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 60 72 3.1E-11 T 17-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 VI35_15755 11bc88299277b50d96c2c3f4f8dd86e1 183 Gene3D G3DSA:2.40.100.10 17 180 7.7E-55 T 17-10-2018 IPR029000 Cyclophilin-like domain superfamily VI35_15755 11bc88299277b50d96c2c3f4f8dd86e1 183 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 55 72 - T 17-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 VI35_15755 11bc88299277b50d96c2c3f4f8dd86e1 183 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 21 158 9.1E-43 T 17-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 VI35_15755 11bc88299277b50d96c2c3f4f8dd86e1 183 SUPERFAMILY SSF50891 18 179 3.36E-47 T 17-10-2018 IPR029000 Cyclophilin-like domain superfamily VI35_15755 11bc88299277b50d96c2c3f4f8dd86e1 183 PIRSF PIRSF001467 8 175 6.0E-21 T 17-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 VI35_16260 5f3d202a56a17ba277cbe2b66497b752 556 SUPERFAMILY SSF55816 362 538 3.66E-43 T 17-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VI35_16260 5f3d202a56a17ba277cbe2b66497b752 556 Pfam PF00149 Calcineurin-like phosphoesterase 39 260 5.6E-18 T 17-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 VI35_16260 5f3d202a56a17ba277cbe2b66497b752 556 ProSitePatterns PS00786 5'-nucleotidase signature 2. 114 125 - T 17-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VI35_16260 5f3d202a56a17ba277cbe2b66497b752 556 PRINTS PR01607 Apyrase family signature 213 230 6.1E-47 T 17-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VI35_16260 5f3d202a56a17ba277cbe2b66497b752 556 PRINTS PR01607 Apyrase family signature 37 55 6.1E-47 T 17-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VI35_16260 5f3d202a56a17ba277cbe2b66497b752 556 PRINTS PR01607 Apyrase family signature 244 267 6.1E-47 T 17-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VI35_16260 5f3d202a56a17ba277cbe2b66497b752 556 PRINTS PR01607 Apyrase family signature 485 504 6.1E-47 T 17-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VI35_16260 5f3d202a56a17ba277cbe2b66497b752 556 PRINTS PR01607 Apyrase family signature 290 310 6.1E-47 T 17-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VI35_16260 5f3d202a56a17ba277cbe2b66497b752 556 PRINTS PR01607 Apyrase family signature 416 439 6.1E-47 T 17-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VI35_16260 5f3d202a56a17ba277cbe2b66497b752 556 Pfam PF02872 5'-nucleotidase, C-terminal domain 362 510 1.0E-31 T 17-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VI35_16260 5f3d202a56a17ba277cbe2b66497b752 556 SUPERFAMILY SSF56300 35 358 2.32E-86 T 17-10-2018 VI35_16260 5f3d202a56a17ba277cbe2b66497b752 556 Gene3D G3DSA:3.60.21.10 33 361 1.2E-113 T 17-10-2018 IPR029052 Metallo-dependent phosphatase-like VI35_16260 5f3d202a56a17ba277cbe2b66497b752 556 ProSitePatterns PS00785 5'-nucleotidase signature 1. 39 51 - T 17-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VI35_16260 5f3d202a56a17ba277cbe2b66497b752 556 Gene3D G3DSA:3.90.780.10 362 546 2.7E-48 T 17-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VI35_09945 09b2dfbcfbcec352073ea1ebbc65d414 103 Pfam PF04341 Protein of unknown function, DUF485 10 98 1.0E-35 T 17-10-2018 IPR007436 Protein of unknown function DUF485 VI35_15570 04828d21a89ea1a60fc075bee73f1773 477 Pfam PF02378 Phosphotransferase system, EIIC 13 318 1.2E-73 T 17-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 VI35_15570 04828d21a89ea1a60fc075bee73f1773 477 SUPERFAMILY SSF55604 402 471 1.15E-19 T 17-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VI35_15570 04828d21a89ea1a60fc075bee73f1773 477 TIGRFAM TIGR02002 PTS-II-BC-glcB: PTS system, glucose-specific IIBC component 2 474 1.7E-199 T 17-10-2018 IPR011299 PTS system glucose-specific IIBC component GO:0005355|GO:0016021|GO:1904659 VI35_15570 04828d21a89ea1a60fc075bee73f1773 477 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 376 460 7.4E-25 T 17-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 VI35_15570 04828d21a89ea1a60fc075bee73f1773 477 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 414 431 - T 17-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VI35_15570 04828d21a89ea1a60fc075bee73f1773 477 Gene3D G3DSA:3.30.1360.60 396 477 2.8E-29 T 17-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VI35_15570 04828d21a89ea1a60fc075bee73f1773 477 Pfam PF00367 phosphotransferase system, EIIB 405 436 1.5E-13 T 17-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VI35_09165 c939ed5cf1f66fdcb017b61e67eb0271 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 72 83 2.4E-12 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_09165 c939ed5cf1f66fdcb017b61e67eb0271 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 164 2.4E-12 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_09165 c939ed5cf1f66fdcb017b61e67eb0271 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 133 2.4E-12 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_09165 c939ed5cf1f66fdcb017b61e67eb0271 268 Gene3D G3DSA:3.40.50.720 3 251 3.7E-62 T 17-10-2018 VI35_09165 c939ed5cf1f66fdcb017b61e67eb0271 268 SUPERFAMILY SSF51735 5 262 2.19E-60 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_09165 c939ed5cf1f66fdcb017b61e67eb0271 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 9.4E-26 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_09165 c939ed5cf1f66fdcb017b61e67eb0271 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 135 9.4E-26 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_09165 c939ed5cf1f66fdcb017b61e67eb0271 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 72 83 9.4E-26 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_09165 c939ed5cf1f66fdcb017b61e67eb0271 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 183 9.4E-26 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_09165 c939ed5cf1f66fdcb017b61e67eb0271 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 145 164 9.4E-26 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_09165 c939ed5cf1f66fdcb017b61e67eb0271 268 Pfam PF00106 short chain dehydrogenase 6 183 7.9E-50 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_09730 696dd85d1f615144b3cb2bc5865c6680 264 TIGRFAM TIGR01267 Phe4hydrox_mono: phenylalanine-4-hydroxylase 9 250 4.0E-100 T 17-10-2018 IPR005960 Phenylalanine-4-hydroxylase, monomeric form GO:0004505|GO:0006559|GO:0055114 KEGG: 00360+1.14.16.1|KEGG: 00400+1.14.16.1|KEGG: 00790+1.14.16.1|MetaCyc: PWY-6134|MetaCyc: PWY-7158 VI35_09730 696dd85d1f615144b3cb2bc5865c6680 264 Pfam PF00351 Biopterin-dependent aromatic amino acid hydroxylase 13 226 7.0E-49 T 17-10-2018 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 VI35_09730 696dd85d1f615144b3cb2bc5865c6680 264 ProSitePatterns PS00367 Biopterin-dependent aromatic amino acid hydroxylases signature. 116 127 - T 17-10-2018 IPR018301 Aromatic amino acid hydroxylase, iron/copper binding site GO:0004497|GO:0005506|GO:0009072|GO:0055114 VI35_09730 696dd85d1f615144b3cb2bc5865c6680 264 SUPERFAMILY SSF56534 5 237 6.93E-98 T 17-10-2018 IPR036329 Aromatic amino acid monoxygenase, C-terminal domain superfamily VI35_09730 696dd85d1f615144b3cb2bc5865c6680 264 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 177 195 7.0E-11 T 17-10-2018 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 VI35_09730 696dd85d1f615144b3cb2bc5865c6680 264 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 137 156 7.0E-11 T 17-10-2018 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 VI35_09730 696dd85d1f615144b3cb2bc5865c6680 264 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 73 95 7.0E-11 T 17-10-2018 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 VI35_09730 696dd85d1f615144b3cb2bc5865c6680 264 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 208 227 7.0E-11 T 17-10-2018 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 VI35_09730 696dd85d1f615144b3cb2bc5865c6680 264 Gene3D G3DSA:1.10.800.10 1 263 1.1E-96 T 17-10-2018 IPR036951 Aromatic amino acid hydroxylase superfamily GO:0004497|GO:0005506|GO:0009072|GO:0055114 VI35_03490 e55a593f801e816688c9d9abd94dc0bd 385 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 2 340 2.6E-73 T 17-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 VI35_03490 e55a593f801e816688c9d9abd94dc0bd 385 SUPERFAMILY SSF103473 2 355 2.88E-58 T 17-10-2018 IPR036259 MFS transporter superfamily VI35_03490 e55a593f801e816688c9d9abd94dc0bd 385 Pfam PF07690 Major Facilitator Superfamily 6 342 3.9E-44 T 17-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VI35_03490 e55a593f801e816688c9d9abd94dc0bd 385 ProSitePatterns PS00216 Sugar transport proteins signature 1. 55 71 - T 17-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 VI35_03490 e55a593f801e816688c9d9abd94dc0bd 385 Gene3D G3DSA:1.20.1720.10 1 377 5.4E-91 T 17-10-2018 VI35_14520 725b08167b8b018762f3b4e262d61589 204 Gene3D G3DSA:3.90.550.10 10 200 1.4E-56 T 17-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VI35_14520 725b08167b8b018762f3b4e262d61589 204 SUPERFAMILY SSF53448 12 191 9.91E-35 T 17-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VI35_14520 725b08167b8b018762f3b4e262d61589 204 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 9 194 28.701 T 17-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 VI35_14520 725b08167b8b018762f3b4e262d61589 204 Pfam PF12804 MobA-like NTP transferase domain 13 168 2.0E-35 T 17-10-2018 IPR025877 MobA-like NTP transferase VI35_14520 725b08167b8b018762f3b4e262d61589 204 TIGRFAM TIGR02665 molyb_mobA: molybdenum cofactor guanylyltransferase 12 192 9.8E-73 T 17-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 VI35_06475 e25b5b540a3941ee3413341c824dc2cc 512 Pfam PF14400 Inactive transglutaminase fused to 7 transmembrane helices 24 182 8.7E-57 T 17-10-2018 IPR025838 Inactive transglutaminase fused to 7 transmembrane helices VI35_06475 e25b5b540a3941ee3413341c824dc2cc 512 Pfam PF14402 7 transmembrane helices usually fused to an inactive transglutaminase 255 498 1.9E-110 T 17-10-2018 IPR025840 7 transmembrane helices usually fused to an inactive transglutaminase VI35_04390 bc9833e8235b9b0d076e01631dc41d42 605 Gene3D G3DSA:3.10.105.10 313 530 6.6E-44 T 17-10-2018 VI35_04390 bc9833e8235b9b0d076e01631dc41d42 605 SUPERFAMILY SSF53850 47 559 2.04E-96 T 17-10-2018 VI35_04390 bc9833e8235b9b0d076e01631dc41d42 605 Gene3D G3DSA:3.40.190.10 20 312 7.0E-48 T 17-10-2018 VI35_04390 bc9833e8235b9b0d076e01631dc41d42 605 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 94 466 4.5E-63 T 17-10-2018 IPR000914 Solute-binding protein family 5 domain VI35_04390 bc9833e8235b9b0d076e01631dc41d42 605 PIRSF PIRSF002741 12 558 7.3E-81 T 17-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 VI35_06215 8b8ac0ae7160301b6f864af745117786 118 Hamap MF_00460 Protein RnfH [rnfH]. 5 95 23.993 T 17-10-2018 IPR005346 RnfH protein VI35_06215 8b8ac0ae7160301b6f864af745117786 118 SUPERFAMILY SSF54285 4 79 1.31E-23 T 17-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp VI35_06215 8b8ac0ae7160301b6f864af745117786 118 Gene3D G3DSA:3.10.20.280 1 89 4.7E-32 T 17-10-2018 IPR037021 RnfH superfamily VI35_06215 8b8ac0ae7160301b6f864af745117786 118 Pfam PF03658 RnfH family Ubiquitin 6 87 2.1E-32 T 17-10-2018 IPR005346 RnfH protein VI35_14275 912335abca341af442ac224d155145b2 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 50 65 9.1E-10 T 17-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VI35_14275 912335abca341af442ac224d155145b2 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 18 33 9.1E-10 T 17-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VI35_14275 912335abca341af442ac224d155145b2 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 65 80 9.1E-10 T 17-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VI35_14275 912335abca341af442ac224d155145b2 104 Gene3D G3DSA:1.10.10.10 3 103 6.6E-24 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_14275 912335abca341af442ac224d155145b2 104 SMART SM00418 16 94 4.7E-21 T 17-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VI35_14275 912335abca341af442ac224d155145b2 104 SUPERFAMILY SSF46785 7 98 9.56E-23 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_14275 912335abca341af442ac224d155145b2 104 Pfam PF01022 Bacterial regulatory protein, arsR family 23 69 4.6E-10 T 17-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VI35_19595 730a8c85078ba0d8a0694e0647ba3319 417 Gene3D G3DSA:3.30.870.10 7 187 8.9E-34 T 17-10-2018 VI35_19595 730a8c85078ba0d8a0694e0647ba3319 417 SMART SM00155 331 358 0.68 T 17-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 VI35_19595 730a8c85078ba0d8a0694e0647ba3319 417 SMART SM00155 113 140 0.0056 T 17-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 VI35_19595 730a8c85078ba0d8a0694e0647ba3319 417 SUPERFAMILY SSF56024 5 192 1.03E-39 T 17-10-2018 VI35_19595 730a8c85078ba0d8a0694e0647ba3319 417 Pfam PF13091 PLD-like domain 258 383 9.0E-16 T 17-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 VI35_19595 730a8c85078ba0d8a0694e0647ba3319 417 Pfam PF13091 PLD-like domain 20 167 1.1E-13 T 17-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 VI35_19595 730a8c85078ba0d8a0694e0647ba3319 417 SUPERFAMILY SSF56024 232 390 2.92E-21 T 17-10-2018 VI35_19595 730a8c85078ba0d8a0694e0647ba3319 417 Gene3D G3DSA:3.30.870.10 246 411 1.1E-24 T 17-10-2018 VI35_07310 f1a39bdb42bb9ff1c19e3e6b8e9d48c4 256 Pfam PF00005 ABC transporter 22 181 2.5E-30 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_07310 f1a39bdb42bb9ff1c19e3e6b8e9d48c4 256 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_07310 f1a39bdb42bb9ff1c19e3e6b8e9d48c4 256 SMART SM00382 31 229 3.1E-14 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_07310 f1a39bdb42bb9ff1c19e3e6b8e9d48c4 256 Gene3D G3DSA:3.40.50.300 3 255 4.4E-75 T 17-10-2018 VI35_07310 f1a39bdb42bb9ff1c19e3e6b8e9d48c4 256 SUPERFAMILY SSF52540 7 251 3.94E-74 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_07310 f1a39bdb42bb9ff1c19e3e6b8e9d48c4 256 PIRSF PIRSF039085 3 256 3.5E-115 T 17-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 VI35_14920 6b5c7cf201d52f68a3ae2e35b90c885c 217 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 11 213 42.584 T 17-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VI35_14920 6b5c7cf201d52f68a3ae2e35b90c885c 217 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 17 208 5.0E-84 T 17-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VI35_14920 6b5c7cf201d52f68a3ae2e35b90c885c 217 Gene3D G3DSA:3.90.870.10 1 216 1.6E-92 T 17-10-2018 VI35_14920 6b5c7cf201d52f68a3ae2e35b90c885c 217 SUPERFAMILY SSF55821 7 210 1.01E-85 T 17-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily VI35_14920 6b5c7cf201d52f68a3ae2e35b90c885c 217 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 13 209 3.2E-82 T 17-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VI35_16385 9e12aebb84108d4ff6f05218d01272e6 322 Pfam PF04187 Haem-binding uptake, Tiki superfamily, ChaN 48 254 1.9E-57 T 17-10-2018 IPR007314 Haem-binding uptake, Tiki superfamily, ChaN VI35_16385 9e12aebb84108d4ff6f05218d01272e6 322 Gene3D G3DSA:1.10.8.760 153 217 1.3E-25 T 17-10-2018 VI35_16385 9e12aebb84108d4ff6f05218d01272e6 322 PIRSF PIRSF020419 2 301 4.3E-53 T 17-10-2018 IPR016773 Ferric uptake regulator, CjrA, predicted VI35_16385 9e12aebb84108d4ff6f05218d01272e6 322 SUPERFAMILY SSF159501 28 280 8.89E-67 T 17-10-2018 VI35_16385 9e12aebb84108d4ff6f05218d01272e6 322 Gene3D G3DSA:3.40.50.11550 35 267 1.3E-25 T 17-10-2018 VI35_19840 35c06f8dbb7462a78ef798609b8e253e 122 SUPERFAMILY SSF50193 1 122 1.2E-52 T 17-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 VI35_19840 35c06f8dbb7462a78ef798609b8e253e 122 Gene3D G3DSA:2.40.150.20 1 122 3.2E-56 T 17-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 VI35_19840 35c06f8dbb7462a78ef798609b8e253e 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 3.3E-56 T 17-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 VI35_19840 35c06f8dbb7462a78ef798609b8e253e 122 SMART SM01374 1 122 3.7E-87 T 17-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 VI35_19840 35c06f8dbb7462a78ef798609b8e253e 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 17-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19840 35c06f8dbb7462a78ef798609b8e253e 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 4.3E-59 T 17-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 VI35_19840 35c06f8dbb7462a78ef798609b8e253e 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 27.363 T 17-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 VI35_04280 fe2f1f66724da42556033f59910c8201 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 36 - T 17-10-2018 IPR019844 Cold-shock conserved site VI35_04280 fe2f1f66724da42556033f59910c8201 69 PRINTS PR00050 Cold shock protein signature 42 60 4.7E-17 T 17-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VI35_04280 fe2f1f66724da42556033f59910c8201 69 PRINTS PR00050 Cold shock protein signature 27 36 4.7E-17 T 17-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VI35_04280 fe2f1f66724da42556033f59910c8201 69 PRINTS PR00050 Cold shock protein signature 7 22 4.7E-17 T 17-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VI35_04280 fe2f1f66724da42556033f59910c8201 69 SMART SM00357 6 69 2.9E-29 T 17-10-2018 IPR011129 Cold shock domain GO:0003676 VI35_04280 fe2f1f66724da42556033f59910c8201 69 Gene3D G3DSA:2.40.50.140 4 68 1.0E-28 T 17-10-2018 VI35_04280 fe2f1f66724da42556033f59910c8201 69 PIRSF PIRSF002599 1 69 4.5E-25 T 17-10-2018 IPR012156 Cold shock, CspA GO:0003676 VI35_04280 fe2f1f66724da42556033f59910c8201 69 Pfam PF00313 'Cold-shock' DNA-binding domain 6 68 1.5E-29 T 17-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VI35_04280 fe2f1f66724da42556033f59910c8201 69 SUPERFAMILY SSF50249 5 68 4.05E-24 T 17-10-2018 IPR012340 Nucleic acid-binding, OB-fold VI35_13640 4eaf977dd44de79c27d7e6f2dbae6c1c 448 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 1 430 3.8E-101 T 17-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G VI35_13640 4eaf977dd44de79c27d7e6f2dbae6c1c 448 Pfam PF07559 Flagellar basal body protein FlaE 185 328 1.1E-25 T 17-10-2018 IPR011491 Flagellar hook protein FlgE VI35_13640 4eaf977dd44de79c27d7e6f2dbae6c1c 448 Gene3D G3DSA:2.60.98.20 157 329 2.3E-24 T 17-10-2018 IPR037058 Flagellar hook protein FlgE superfamily VI35_13640 4eaf977dd44de79c27d7e6f2dbae6c1c 448 SUPERFAMILY SSF117143 80 409 6.28E-73 T 17-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like VI35_13640 4eaf977dd44de79c27d7e6f2dbae6c1c 448 Pfam PF00460 Flagella basal body rod protein 3 33 5.0E-10 T 17-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 VI35_13640 4eaf977dd44de79c27d7e6f2dbae6c1c 448 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 9 29 - T 17-10-2018 IPR019776 Flagellar basal body rod protein, conserved site VI35_13640 4eaf977dd44de79c27d7e6f2dbae6c1c 448 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 369 446 1.2E-14 T 17-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain VI35_12930 daa7fedf7a93887e42d91e4f95c6ff7b 398 SUPERFAMILY SSF53474 247 350 5.55E-10 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_12930 daa7fedf7a93887e42d91e4f95c6ff7b 398 Gene3D G3DSA:3.40.50.1820 157 394 1.9E-8 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_10095 e1e03f9c2e6c8a5968cac1e39eaac320 283 SUPERFAMILY SSF52317 27 276 1.78E-45 T 17-10-2018 IPR029062 Class I glutamine amidotransferase-like VI35_10095 e1e03f9c2e6c8a5968cac1e39eaac320 283 Gene3D G3DSA:3.40.50.880 5 282 2.5E-68 T 17-10-2018 IPR029062 Class I glutamine amidotransferase-like VI35_10095 e1e03f9c2e6c8a5968cac1e39eaac320 283 Pfam PF01965 DJ-1/PfpI family 48 177 3.2E-12 T 17-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 VI35_08325 d8b6d5b7abfee521f469cf82fce11a40 172 SUPERFAMILY SSF141452 3 168 6.15E-38 T 17-10-2018 IPR036624 Hcp1-like superfamily VI35_08325 d8b6d5b7abfee521f469cf82fce11a40 172 Pfam PF05638 Type VI secretion system effector, Hcp 6 155 1.0E-30 T 17-10-2018 IPR008514 Type VI secretion system effector, Hcp VI35_08325 d8b6d5b7abfee521f469cf82fce11a40 172 Gene3D G3DSA:2.30.110.20 2 172 7.7E-67 T 17-10-2018 IPR036624 Hcp1-like superfamily VI35_08325 d8b6d5b7abfee521f469cf82fce11a40 172 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 168 7.2E-63 T 17-10-2018 IPR008514 Type VI secretion system effector, Hcp VI35_21205 1daef6b8203de0c41cf7db0a8625f22b 453 Gene3D G3DSA:3.30.1360.120 1 120 1.3E-37 T 17-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 VI35_21205 1daef6b8203de0c41cf7db0a8625f22b 453 SUPERFAMILY SSF116878 120 453 3.92E-51 T 17-10-2018 VI35_21205 1daef6b8203de0c41cf7db0a8625f22b 453 Pfam PF01926 50S ribosome-binding GTPase 217 307 1.2E-23 T 17-10-2018 IPR006073 GTP binding domain GO:0005525 VI35_21205 1daef6b8203de0c41cf7db0a8625f22b 453 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 10 453 7.0E-102 T 17-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 VI35_21205 1daef6b8203de0c41cf7db0a8625f22b 453 Pfam PF10396 GTP-binding protein TrmE N-terminus 5 119 1.0E-33 T 17-10-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 VI35_21205 1daef6b8203de0c41cf7db0a8625f22b 453 Gene3D G3DSA:3.40.50.300 216 381 1.6E-101 T 17-10-2018 VI35_21205 1daef6b8203de0c41cf7db0a8625f22b 453 SUPERFAMILY SSF52540 71 371 1.1E-44 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_21205 1daef6b8203de0c41cf7db0a8625f22b 453 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 4 453 32.785 T 17-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 VI35_21205 1daef6b8203de0c41cf7db0a8625f22b 453 Pfam PF12631 MnmE helical domain 122 450 2.0E-59 T 17-10-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 VI35_21205 1daef6b8203de0c41cf7db0a8625f22b 453 Gene3D G3DSA:1.20.120.430 121 453 1.6E-101 T 17-10-2018 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 VI35_21205 1daef6b8203de0c41cf7db0a8625f22b 453 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 215 349 7.5E-21 T 17-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VI35_14800 6e1adc1b23a87e3e0761cae3a4c9ca72 487 SUPERFAMILY SSF53720 15 484 5.37E-171 T 17-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 VI35_14800 6e1adc1b23a87e3e0761cae3a4c9ca72 487 Gene3D G3DSA:3.40.605.10 27 475 7.4E-181 T 17-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 VI35_14800 6e1adc1b23a87e3e0761cae3a4c9ca72 487 Pfam PF00171 Aldehyde dehydrogenase family 22 480 1.7E-170 T 17-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 VI35_14800 6e1adc1b23a87e3e0761cae3a4c9ca72 487 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 32 479 5.5E-207 T 17-10-2018 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 VI35_14800 6e1adc1b23a87e3e0761cae3a4c9ca72 487 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 257 264 - T 17-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 VI35_14800 6e1adc1b23a87e3e0761cae3a4c9ca72 487 Gene3D G3DSA:3.40.309.10 261 450 7.4E-181 T 17-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 VI35_14800 6e1adc1b23a87e3e0761cae3a4c9ca72 487 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 285 296 - T 17-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 VI35_12515 9193e17010d48187291bdbd2c87d9d7f 508 Gene3D G3DSA:3.40.190.10 30 257 4.7E-47 T 17-10-2018 VI35_12515 9193e17010d48187291bdbd2c87d9d7f 508 PIRSF PIRSF002741 9 508 6.3E-62 T 17-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 VI35_12515 9193e17010d48187291bdbd2c87d9d7f 508 SUPERFAMILY SSF53850 29 505 2.31E-95 T 17-10-2018 VI35_12515 9193e17010d48187291bdbd2c87d9d7f 508 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 65 402 1.5E-64 T 17-10-2018 IPR000914 Solute-binding protein family 5 domain VI35_12515 9193e17010d48187291bdbd2c87d9d7f 508 Gene3D G3DSA:3.10.105.10 258 475 2.8E-39 T 17-10-2018 VI35_19610 b1d65afd52f7bd6c557ab39e3238d992 54 Pfam PF02416 mttA/Hcf106 family 8 50 1.4E-14 T 17-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 VI35_19610 b1d65afd52f7bd6c557ab39e3238d992 54 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 5 49 6.7E-18 T 17-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 VI35_19610 b1d65afd52f7bd6c557ab39e3238d992 54 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 3 53 16.701 T 17-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 VI35_00975 436deae56a7e606dd0195b621b4b01ac 1024 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 49 221 1.3E-61 T 17-10-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 VI35_00975 436deae56a7e606dd0195b621b4b01ac 1024 Gene3D G3DSA:2.60.40.10 630 734 5.8E-22 T 17-10-2018 IPR013783 Immunoglobulin-like fold VI35_00975 436deae56a7e606dd0195b621b4b01ac 1024 Gene3D G3DSA:2.60.40.10 223 334 3.7E-26 T 17-10-2018 IPR013783 Immunoglobulin-like fold VI35_00975 436deae56a7e606dd0195b621b4b01ac 1024 SUPERFAMILY SSF49303 622 731 1.29E-26 T 17-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily VI35_00975 436deae56a7e606dd0195b621b4b01ac 1024 Pfam PF02929 Beta galactosidase small chain 757 1022 1.1E-57 T 17-10-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 VI35_00975 436deae56a7e606dd0195b621b4b01ac 1024 SUPERFAMILY SSF51445 336 625 4.65E-100 T 17-10-2018 IPR017853 Glycoside hydrolase superfamily VI35_00975 436deae56a7e606dd0195b621b4b01ac 1024 Pfam PF16353 Domain of unknown function(DUF4981) 640 727 1.4E-16 T 17-10-2018 IPR032312 Beta-galactosidase, domain 4 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 VI35_00975 436deae56a7e606dd0195b621b4b01ac 1024 ProSitePatterns PS00719 Glycosyl hydrolases family 2 signature 1. 386 411 - T 17-10-2018 IPR023230 Glycoside hydrolase, family 2, conserved site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VI35_00975 436deae56a7e606dd0195b621b4b01ac 1024 Gene3D G3DSA:2.60.120.260 2 221 1.9E-72 T 17-10-2018 IPR008979 Galactose-binding-like domain superfamily VI35_00975 436deae56a7e606dd0195b621b4b01ac 1024 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 336 627 8.5E-107 T 17-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 VI35_00975 436deae56a7e606dd0195b621b4b01ac 1024 Pfam PF00703 Glycosyl hydrolases family 2 224 334 2.1E-14 T 17-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VI35_00975 436deae56a7e606dd0195b621b4b01ac 1024 Gene3D G3DSA:3.20.20.80 335 624 3.2E-124 T 17-10-2018 VI35_00975 436deae56a7e606dd0195b621b4b01ac 1024 PRINTS PR00132 Glycosyl hydrolase family 2 signature 532 547 1.6E-34 T 17-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VI35_00975 436deae56a7e606dd0195b621b4b01ac 1024 PRINTS PR00132 Glycosyl hydrolase family 2 signature 376 394 1.6E-34 T 17-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VI35_00975 436deae56a7e606dd0195b621b4b01ac 1024 PRINTS PR00132 Glycosyl hydrolase family 2 signature 448 463 1.6E-34 T 17-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VI35_00975 436deae56a7e606dd0195b621b4b01ac 1024 PRINTS PR00132 Glycosyl hydrolase family 2 signature 149 164 1.6E-34 T 17-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VI35_00975 436deae56a7e606dd0195b621b4b01ac 1024 PRINTS PR00132 Glycosyl hydrolase family 2 signature 345 359 1.6E-34 T 17-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VI35_00975 436deae56a7e606dd0195b621b4b01ac 1024 Gene3D G3DSA:2.70.98.10 735 1024 1.2E-79 T 17-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 VI35_00975 436deae56a7e606dd0195b621b4b01ac 1024 SUPERFAMILY SSF49303 224 334 1.01E-23 T 17-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily VI35_00975 436deae56a7e606dd0195b621b4b01ac 1024 SUPERFAMILY SSF74650 738 1023 9.26E-86 T 17-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 VI35_00975 436deae56a7e606dd0195b621b4b01ac 1024 SUPERFAMILY SSF49785 9 221 2.98E-61 T 17-10-2018 IPR008979 Galactose-binding-like domain superfamily VI35_00975 436deae56a7e606dd0195b621b4b01ac 1024 Hamap MF_01687 Beta-galactosidase [lacZ]. 1 1024 16.858 T 17-10-2018 IPR023933 Glycoside hydrolase, family 2, beta-galactosidase GO:0016798 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 VI35_00975 436deae56a7e606dd0195b621b4b01ac 1024 SMART SM01038 750 1024 2.1E-113 T 17-10-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 VI35_11555 da537ded4b31e14607171fe2a5f9b854 157 SUPERFAMILY SSF54637 12 151 4.11E-13 T 17-10-2018 IPR029069 HotDog domain superfamily VI35_11555 da537ded4b31e14607171fe2a5f9b854 157 Pfam PF14539 Domain of unknown function (DUF4442) 16 107 1.4E-8 T 17-10-2018 IPR027961 Protein of unknown function DUF4442 VI35_11555 da537ded4b31e14607171fe2a5f9b854 157 Gene3D G3DSA:3.10.129.10 2 154 5.0E-23 T 17-10-2018 VI35_17420 9f87252dfb461b37046491f081e6d7b2 259 SUPERFAMILY SSF52096 14 259 4.18E-71 T 17-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VI35_17420 9f87252dfb461b37046491f081e6d7b2 259 Gene3D G3DSA:3.90.226.10 4 246 4.1E-69 T 17-10-2018 VI35_17420 9f87252dfb461b37046491f081e6d7b2 259 Pfam PF00378 Enoyl-CoA hydratase/isomerase 18 249 1.7E-48 T 17-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 VI35_09495 20040cb6483f3bfd6209a75aa8c51098 468 SUPERFAMILY SSF51905 29 409 1.34E-37 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_09495 20040cb6483f3bfd6209a75aa8c51098 468 Pfam PF01266 FAD dependent oxidoreductase 30 394 5.6E-53 T 17-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 VI35_09495 20040cb6483f3bfd6209a75aa8c51098 468 Gene3D G3DSA:3.50.50.60 30 395 2.5E-65 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_09495 20040cb6483f3bfd6209a75aa8c51098 468 Gene3D G3DSA:3.30.9.10 124 354 2.5E-65 T 17-10-2018 VI35_09495 20040cb6483f3bfd6209a75aa8c51098 468 TIGRFAM TIGR03329 Phn_aa_oxid: putative aminophosphonate oxidoreductase 5 468 1.4E-247 T 17-10-2018 IPR017715 Putative aminophosphonate oxidoreductase VI35_04105 881a08fc7d81007e85c3e13ef81feb22 355 SUPERFAMILY SSF53187 30 338 3.27E-53 T 17-10-2018 VI35_04105 881a08fc7d81007e85c3e13ef81feb22 355 Pfam PF04389 Peptidase family M28 93 329 3.6E-35 T 17-10-2018 IPR007484 Peptidase M28 VI35_19405 4199f580a70e3083916444f9317841c9 346 Gene3D G3DSA:3.90.640.10 189 262 3.9E-130 T 17-10-2018 VI35_19405 4199f580a70e3083916444f9317841c9 346 Gene3D G3DSA:3.30.420.40 14 330 3.9E-130 T 17-10-2018 VI35_19405 4199f580a70e3083916444f9317841c9 346 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 9 338 6.1E-166 T 17-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 VI35_19405 4199f580a70e3083916444f9317841c9 346 Gene3D G3DSA:3.30.420.40 157 320 3.9E-130 T 17-10-2018 VI35_19405 4199f580a70e3083916444f9317841c9 346 SUPERFAMILY SSF53067 9 151 1.68E-38 T 17-10-2018 VI35_19405 4199f580a70e3083916444f9317841c9 346 SUPERFAMILY SSF53067 152 338 7.86E-50 T 17-10-2018 VI35_19405 4199f580a70e3083916444f9317841c9 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 71 94 6.9E-65 T 17-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 VI35_19405 4199f580a70e3083916444f9317841c9 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 51 69 6.9E-65 T 17-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 VI35_19405 4199f580a70e3083916444f9317841c9 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 135 154 6.9E-65 T 17-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 VI35_19405 4199f580a70e3083916444f9317841c9 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 303 329 6.9E-65 T 17-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 VI35_19405 4199f580a70e3083916444f9317841c9 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 190 210 6.9E-65 T 17-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 VI35_19405 4199f580a70e3083916444f9317841c9 346 Pfam PF06723 MreB/Mbl protein 11 337 1.2E-149 T 17-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 VI35_16640 995899686580c0d29033335457130183 266 Gene3D G3DSA:3.40.190.10 31 260 6.7E-94 T 17-10-2018 VI35_16640 995899686580c0d29033335457130183 266 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 12 266 6.4E-120 T 17-10-2018 IPR004872 Lipoprotein NlpA family VI35_16640 995899686580c0d29033335457130183 266 Gene3D G3DSA:3.40.190.10 112 216 6.7E-94 T 17-10-2018 VI35_16640 995899686580c0d29033335457130183 266 PIRSF PIRSF002854 1 266 4.8E-101 T 17-10-2018 IPR004872 Lipoprotein NlpA family VI35_16640 995899686580c0d29033335457130183 266 SUPERFAMILY SSF53850 29 266 1.12E-81 T 17-10-2018 VI35_16640 995899686580c0d29033335457130183 266 Pfam PF03180 NLPA lipoprotein 30 266 1.3E-97 T 17-10-2018 IPR004872 Lipoprotein NlpA family VI35_07930 a5efc0443b5c2915b9220dd0f4edb729 206 Pfam PF12421 Fibronectin type III protein 63 147 4.3E-7 T 17-10-2018 IPR021034 Domain of unknown function, DUF3672 VI35_17045 7e7b728f8dad6794a7465330883e5d45 149 Pfam PF00583 Acetyltransferase (GNAT) family 27 133 3.0E-12 T 17-10-2018 IPR000182 GNAT domain VI35_17045 7e7b728f8dad6794a7465330883e5d45 149 Gene3D G3DSA:3.40.630.30 1 137 1.0E-32 T 17-10-2018 VI35_17045 7e7b728f8dad6794a7465330883e5d45 149 SUPERFAMILY SSF55729 1 137 2.79E-29 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_01300 4c8e70ffe66d3413ccf92b4b6629e03c 233 PIRSF PIRSF002155 1 227 1.6E-77 T 17-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_01300 4c8e70ffe66d3413ccf92b4b6629e03c 233 Pfam PF00687 Ribosomal protein L1p/L10e family 30 219 1.6E-49 T 17-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein VI35_01300 4c8e70ffe66d3413ccf92b4b6629e03c 233 Gene3D G3DSA:3.40.50.790 68 159 3.7E-79 T 17-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich VI35_01300 4c8e70ffe66d3413ccf92b4b6629e03c 233 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 228 7.0E-106 T 17-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 VI35_01300 4c8e70ffe66d3413ccf92b4b6629e03c 233 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 42.864 T 17-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 VI35_01300 4c8e70ffe66d3413ccf92b4b6629e03c 233 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 17-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_01300 4c8e70ffe66d3413ccf92b4b6629e03c 233 SUPERFAMILY SSF56808 6 225 4.71E-81 T 17-10-2018 IPR023674 Ribosomal protein L1-like VI35_01300 4c8e70ffe66d3413ccf92b4b6629e03c 233 Gene3D G3DSA:3.30.190.20 21 225 3.7E-79 T 17-10-2018 VI35_01995 567e524e7113352d23b41295ad8894ff 244 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 61 81 5.4E-65 T 17-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VI35_01995 567e524e7113352d23b41295ad8894ff 244 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 42 61 5.4E-65 T 17-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VI35_01995 567e524e7113352d23b41295ad8894ff 244 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 81 100 5.4E-65 T 17-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VI35_01995 567e524e7113352d23b41295ad8894ff 244 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 214 239 5.4E-65 T 17-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VI35_01995 567e524e7113352d23b41295ad8894ff 244 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 169 189 5.4E-65 T 17-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VI35_01995 567e524e7113352d23b41295ad8894ff 244 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 190 211 5.4E-65 T 17-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VI35_01995 567e524e7113352d23b41295ad8894ff 244 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 100 112 2.9E-16 T 17-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 VI35_01995 567e524e7113352d23b41295ad8894ff 244 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 140 152 2.9E-16 T 17-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 VI35_01995 567e524e7113352d23b41295ad8894ff 244 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 230 240 2.9E-16 T 17-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 VI35_01995 567e524e7113352d23b41295ad8894ff 244 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 162 174 2.9E-16 T 17-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 VI35_01995 567e524e7113352d23b41295ad8894ff 244 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 40 49 2.9E-16 T 17-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 VI35_01995 567e524e7113352d23b41295ad8894ff 244 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 112 126 2.9E-16 T 17-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 VI35_01995 567e524e7113352d23b41295ad8894ff 244 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 169 184 - T 17-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VI35_01995 567e524e7113352d23b41295ad8894ff 244 Pfam PF00813 FliP family 45 236 2.0E-76 T 17-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VI35_01995 567e524e7113352d23b41295ad8894ff 244 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 217 229 - T 17-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VI35_01995 567e524e7113352d23b41295ad8894ff 244 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 44 240 2.0E-77 T 17-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 VI35_15115 264964e1895fe3d757bd8f0da9b43196 176 Gene3D G3DSA:3.90.79.10 2 171 1.9E-47 T 17-10-2018 VI35_15115 264964e1895fe3d757bd8f0da9b43196 176 PIRSF PIRSF017340 2 172 2.2E-53 T 17-10-2018 IPR024195 NUDIX hydrolase, YfcD, predicted GO:0016817 VI35_15115 264964e1895fe3d757bd8f0da9b43196 176 SUPERFAMILY SSF55811 8 170 2.17E-33 T 17-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VI35_15115 264964e1895fe3d757bd8f0da9b43196 176 Pfam PF00293 NUDIX domain 34 151 3.7E-15 T 17-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 VI35_01415 55e47afa3214a02fc5f103793c2026ce 356 Pfam PF02733 Dak1 domain 18 351 5.5E-126 T 17-10-2018 IPR004006 DhaK domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 VI35_01415 55e47afa3214a02fc5f103793c2026ce 356 TIGRFAM TIGR02363 dhaK1: dihydroxyacetone kinase, DhaK subunit 1 352 1.6E-143 T 17-10-2018 IPR012736 Dihydroxyacetone kinase DhaK, subunit 1 KEGG: 00561+2.7.1.121 VI35_01415 55e47afa3214a02fc5f103793c2026ce 356 SUPERFAMILY SSF82549 11 354 1.67E-124 T 17-10-2018 VI35_01415 55e47afa3214a02fc5f103793c2026ce 356 Gene3D G3DSA:3.40.50.10440 11 183 1.1E-61 T 17-10-2018 VI35_01415 55e47afa3214a02fc5f103793c2026ce 356 Gene3D G3DSA:3.30.1180.20 184 356 2.2E-61 T 17-10-2018 VI35_19825 43799b848708115ee5460dbc78fd8a56 101 Gene3D G3DSA:4.10.830.10 40 101 1.2E-24 T 17-10-2018 VI35_19825 43799b848708115ee5460dbc78fd8a56 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 26.281 T 17-10-2018 IPR023036 Ribosomal protein S14, bacterial/plastid VI35_19825 43799b848708115ee5460dbc78fd8a56 101 ProSitePatterns PS00527 Ribosomal protein S14 signature. 63 85 - T 17-10-2018 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19825 43799b848708115ee5460dbc78fd8a56 101 SUPERFAMILY SSF57716 2 101 8.55E-38 T 17-10-2018 VI35_19825 43799b848708115ee5460dbc78fd8a56 101 Pfam PF00253 Ribosomal protein S14p/S29e 47 100 1.9E-27 T 17-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_03980 d98ab4198f5c5cbbb53954d8a0dfc61b 156 TIGRFAM TIGR00022 TIGR00022: YhcH/YjgK/YiaL family protein 1 152 1.1E-31 T 17-10-2018 IPR004375 YhcH/YjgK/YiaL family VI35_03980 d98ab4198f5c5cbbb53954d8a0dfc61b 156 Pfam PF04074 Domain of unknown function (DUF386) 1 149 4.4E-35 T 17-10-2018 IPR004375 YhcH/YjgK/YiaL family VI35_03980 d98ab4198f5c5cbbb53954d8a0dfc61b 156 SUPERFAMILY SSF51197 1 153 1.98E-34 T 17-10-2018 VI35_03980 d98ab4198f5c5cbbb53954d8a0dfc61b 156 Gene3D G3DSA:2.60.120.370 1 153 1.8E-31 T 17-10-2018 IPR037012 YhcH/YjgK/YiaL superfamily VI35_19235 015843bf0c3329c9627a8c5df8f6e482 255 SUPERFAMILY SSF110399 1 235 3.92E-85 T 17-10-2018 VI35_19235 015843bf0c3329c9627a8c5df8f6e482 255 Hamap MF_00443 Thiazole synthase [thiG]. 1 253 42.55 T 17-10-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 VI35_19235 015843bf0c3329c9627a8c5df8f6e482 255 Gene3D G3DSA:3.20.20.70 1 253 3.5E-110 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_19235 015843bf0c3329c9627a8c5df8f6e482 255 Pfam PF05690 Thiazole biosynthesis protein ThiG 3 247 2.4E-107 T 17-10-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 VI35_00750 2e4364adf6265b213b0457a30ad187ab 128 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 88 112 - T 17-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site VI35_00750 2e4364adf6265b213b0457a30ad187ab 128 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 83 117 3.6E-13 T 17-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 VI35_00750 2e4364adf6265b213b0457a30ad187ab 128 SUPERFAMILY SSF57716 85 122 2.14E-10 T 17-10-2018 VI35_00750 2e4364adf6265b213b0457a30ad187ab 128 SUPERFAMILY SSF109635 3 84 2.75E-15 T 17-10-2018 IPR037187 DksA, N-terminal domain superfamily VI35_00750 2e4364adf6265b213b0457a30ad187ab 128 Gene3D G3DSA:1.20.120.910 2 125 2.2E-30 T 17-10-2018 VI35_06605 0fcd987251379029b64f1fde92df07ec 200 Pfam PF01066 CDP-alcohol phosphatidyltransferase 27 89 2.9E-9 T 17-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 VI35_06605 0fcd987251379029b64f1fde92df07ec 200 Gene3D G3DSA:1.20.120.1760 2 198 4.7E-22 T 17-10-2018 VI35_06605 0fcd987251379029b64f1fde92df07ec 200 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 68 89 - T 17-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 VI35_00550 269cc47366913ec00c59485c64840789 202 Gene3D G3DSA:3.40.30.10 18 200 4.2E-49 T 17-10-2018 VI35_00550 269cc47366913ec00c59485c64840789 202 Pfam PF01323 DSBA-like thioredoxin domain 42 179 1.8E-20 T 17-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 VI35_00550 269cc47366913ec00c59485c64840789 202 SUPERFAMILY SSF52833 21 199 4.01E-42 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_00550 269cc47366913ec00c59485c64840789 202 PIRSF PIRSF001488 1 201 2.8E-62 T 17-10-2018 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL VI35_03570 ad11b16ef372883e66d37318b9d3e3c4 200 Pfam PF10986 Protein of unknown function (DUF2796) 28 196 2.4E-55 T 17-10-2018 IPR021253 Protein of unknown function DUF2796 VI35_07555 9bc18d3c02a53b9ff014b1424bdb2f51 298 SUPERFAMILY SSF103481 185 288 1.23E-16 T 17-10-2018 VI35_07555 9bc18d3c02a53b9ff014b1424bdb2f51 298 SUPERFAMILY SSF103481 39 140 4.84E-16 T 17-10-2018 VI35_07555 9bc18d3c02a53b9ff014b1424bdb2f51 298 Pfam PF00892 EamA-like transporter family 151 279 2.1E-24 T 17-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VI35_07555 9bc18d3c02a53b9ff014b1424bdb2f51 298 Pfam PF00892 EamA-like transporter family 5 135 2.0E-21 T 17-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VI35_03065 17ac7120e6034550918e2d8df0b9c254 211 Gene3D G3DSA:2.30.110.10 1 205 1.1E-68 T 17-10-2018 IPR012349 FMN-binding split barrel GO:0048037 VI35_03065 17ac7120e6034550918e2d8df0b9c254 211 Pfam PF04299 Putative FMN-binding domain 1 168 2.5E-64 T 17-10-2018 IPR007396 Transcriptional regulator PAI 2-type VI35_03065 17ac7120e6034550918e2d8df0b9c254 211 PIRSF PIRSF010372 1 207 1.4E-80 T 17-10-2018 IPR007396 Transcriptional regulator PAI 2-type VI35_03065 17ac7120e6034550918e2d8df0b9c254 211 SUPERFAMILY SSF50475 8 192 1.35E-41 T 17-10-2018 VI35_00075 55dd5c9f9fafd179923a9f6370b8765f 175 Hamap MF_00276 Potassium-transporting ATPase KdpC subunit [kdpC]. 1 172 26.804 T 17-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 VI35_00075 55dd5c9f9fafd179923a9f6370b8765f 175 Pfam PF02669 K+-transporting ATPase, c chain 3 170 1.3E-50 T 17-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 VI35_00075 55dd5c9f9fafd179923a9f6370b8765f 175 PIRSF PIRSF001296 1 175 3.1E-52 T 17-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 VI35_05610 723670bde5132100217d81cd29fcfe78 126 Pfam PF01228 Glycine radical 10 107 1.7E-22 T 17-10-2018 IPR001150 Glycine radical domain GO:0003824 VI35_05610 723670bde5132100217d81cd29fcfe78 126 ProSitePatterns PS00850 Glycine radical domain signature. 96 104 - T 17-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site VI35_05610 723670bde5132100217d81cd29fcfe78 126 Gene3D G3DSA:3.20.70.20 40 126 1.3E-23 T 17-10-2018 VI35_05610 723670bde5132100217d81cd29fcfe78 126 TIGRFAM TIGR04365 spare_glycyl: autonomous glycyl radical cofactor GrcA 2 126 7.6E-70 T 17-10-2018 IPR011140 Autonomous glycyl radical cofactor GrcA VI35_05610 723670bde5132100217d81cd29fcfe78 126 SUPERFAMILY SSF51998 66 125 5.04E-22 T 17-10-2018 VI35_05610 723670bde5132100217d81cd29fcfe78 126 PIRSF PIRSF000378 2 126 2.8E-52 T 17-10-2018 IPR011140 Autonomous glycyl radical cofactor GrcA VI35_00060 14bcd849c27ae1b49a7e323afe57c540 375 SUPERFAMILY SSF103473 8 371 4.84E-45 T 17-10-2018 IPR036259 MFS transporter superfamily VI35_00060 14bcd849c27ae1b49a7e323afe57c540 375 Pfam PF07690 Major Facilitator Superfamily 21 345 3.9E-33 T 17-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VI35_00060 14bcd849c27ae1b49a7e323afe57c540 375 Gene3D G3DSA:1.20.1720.10 9 372 7.9E-71 T 17-10-2018 VI35_12525 5447aa97457a8ee5411e831cb1c3aa5e 202 Pfam PF00043 Glutathione S-transferase, C-terminal domain 131 197 1.6E-10 T 17-10-2018 IPR004046 Glutathione S-transferase, C-terminal VI35_12525 5447aa97457a8ee5411e831cb1c3aa5e 202 Gene3D G3DSA:3.40.30.10 4 198 5.9E-67 T 17-10-2018 VI35_12525 5447aa97457a8ee5411e831cb1c3aa5e 202 Pfam PF13417 Glutathione S-transferase, N-terminal domain 4 80 2.5E-18 T 17-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 VI35_12525 5447aa97457a8ee5411e831cb1c3aa5e 202 SUPERFAMILY SSF47616 78 201 4.64E-28 T 17-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily VI35_12525 5447aa97457a8ee5411e831cb1c3aa5e 202 SUPERFAMILY SSF52833 1 90 1.35E-24 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_12525 5447aa97457a8ee5411e831cb1c3aa5e 202 Gene3D G3DSA:1.20.1050.10 82 197 5.9E-67 T 17-10-2018 VI35_02610 0a82555f8e1863c77b592a7890d344b6 301 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 14 295 19.153 T 17-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 VI35_02610 0a82555f8e1863c77b592a7890d344b6 301 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 16 293 7.2E-98 T 17-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 VI35_02610 0a82555f8e1863c77b592a7890d344b6 301 Pfam PF01040 UbiA prenyltransferase family 30 278 1.3E-58 T 17-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 VI35_02610 0a82555f8e1863c77b592a7890d344b6 301 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 69 91 - T 17-10-2018 IPR030470 UbiA prenyltransferase conserved site VI35_02610 0a82555f8e1863c77b592a7890d344b6 301 Gene3D G3DSA:1.10.357.140 22 178 3.8E-18 T 17-10-2018 VI35_14615 4abe7382767ed3a81b4a365527de663f 575 PIRSF PIRSF000719 1 575 1.2E-242 T 17-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 VI35_14615 4abe7382767ed3a81b4a365527de663f 575 ProDom PD043552 KINASE KINASE/PHOSPHATASE ISOCITRATE DEHYDROGENASE 3.1.3.- IDH TRANSFERASE IDHK/P HYDROLASE ENZYME 1 563 0.0 T 17-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 VI35_14615 4abe7382767ed3a81b4a365527de663f 575 Pfam PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) 9 566 2.3E-244 T 17-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 VI35_14615 4abe7382767ed3a81b4a365527de663f 575 Hamap MF_00747 Isocitrate dehydrogenase kinase/phosphatase [aceK]. 1 570 44.229 T 17-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 VI35_18540 63040a9603ffb6f8374102964c0e7e60 312 SUPERFAMILY SSF53807 20 311 5.89E-81 T 17-10-2018 VI35_18540 63040a9603ffb6f8374102964c0e7e60 312 Pfam PF01297 Zinc-uptake complex component A periplasmic 22 311 7.8E-63 T 17-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 VI35_18540 63040a9603ffb6f8374102964c0e7e60 312 Gene3D G3DSA:3.40.50.1980 202 312 9.3E-37 T 17-10-2018 VI35_18540 63040a9603ffb6f8374102964c0e7e60 312 Gene3D G3DSA:3.40.50.1980 21 201 1.1E-55 T 17-10-2018 VI35_00395 34712694820040c1682026e08acf0e27 278 SUPERFAMILY SSF82861 24 108 6.54E-17 T 17-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 VI35_00395 34712694820040c1682026e08acf0e27 278 Pfam PF05552 Conserved TM helix 11 60 5.1E-13 T 17-10-2018 IPR008910 Conserved TM helix VI35_00395 34712694820040c1682026e08acf0e27 278 Pfam PF00924 Mechanosensitive ion channel 67 264 1.8E-55 T 17-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 VI35_00395 34712694820040c1682026e08acf0e27 278 SUPERFAMILY SSF50182 110 175 1.34E-16 T 17-10-2018 IPR010920 LSM domain superfamily VI35_00395 34712694820040c1682026e08acf0e27 278 Gene3D G3DSA:3.30.70.100 175 268 3.3E-27 T 17-10-2018 VI35_00395 34712694820040c1682026e08acf0e27 278 SUPERFAMILY SSF82689 176 275 1.44E-33 T 17-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 VI35_00395 34712694820040c1682026e08acf0e27 278 Gene3D G3DSA:2.30.30.60 125 174 5.9E-18 T 17-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily VI35_06945 62782ee325fbd8a5775d09503364aad9 103 Gene3D G3DSA:3.40.30.10 3 103 6.9E-41 T 17-10-2018 VI35_06945 62782ee325fbd8a5775d09503364aad9 103 TIGRFAM TIGR02174 CXXU_selWTH: selT/selW/selH selenoprotein domain 13 84 1.0E-20 T 17-10-2018 IPR011893 Selenoprotein, Rdx-type VI35_06945 62782ee325fbd8a5775d09503364aad9 103 SUPERFAMILY SSF52833 10 94 1.25E-27 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_06945 62782ee325fbd8a5775d09503364aad9 103 Pfam PF10262 Rdx family 12 85 1.9E-31 T 17-10-2018 IPR011893 Selenoprotein, Rdx-type VI35_15455 d5d3be4efd23d35607e8858e7405f38d 301 Gene3D G3DSA:1.10.10.10 6 92 2.1E-22 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_15455 d5d3be4efd23d35607e8858e7405f38d 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 5.5E-19 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_15455 d5d3be4efd23d35607e8858e7405f38d 301 Gene3D G3DSA:3.40.190.10 96 295 1.8E-50 T 17-10-2018 VI35_15455 d5d3be4efd23d35607e8858e7405f38d 301 Pfam PF03466 LysR substrate binding domain 92 297 1.9E-37 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_15455 d5d3be4efd23d35607e8858e7405f38d 301 SUPERFAMILY SSF46785 2 86 7.34E-21 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_15455 d5d3be4efd23d35607e8858e7405f38d 301 SUPERFAMILY SSF53850 92 298 6.52E-39 T 17-10-2018 VI35_15455 d5d3be4efd23d35607e8858e7405f38d 301 Gene3D G3DSA:3.40.190.10 168 269 1.8E-50 T 17-10-2018 VI35_13970 7d5d3a278f7f8ad40d5d811e0626b6f5 393 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 65 294 5.7E-15 T 17-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VI35_13970 7d5d3a278f7f8ad40d5d811e0626b6f5 393 Pfam PF00529 HlyD membrane-fusion protein of T1SS 49 362 3.9E-13 T 17-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VI35_13970 7d5d3a278f7f8ad40d5d811e0626b6f5 393 Gene3D G3DSA:2.40.420.20 306 374 2.0E-114 T 17-10-2018 VI35_13970 7d5d3a278f7f8ad40d5d811e0626b6f5 393 Gene3D G3DSA:2.40.30.170 55 305 2.0E-114 T 17-10-2018 VI35_13970 7d5d3a278f7f8ad40d5d811e0626b6f5 393 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 41 376 9.0E-89 T 17-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VI35_13970 7d5d3a278f7f8ad40d5d811e0626b6f5 393 Gene3D G3DSA:1.10.287.470 100 173 2.0E-114 T 17-10-2018 VI35_13970 7d5d3a278f7f8ad40d5d811e0626b6f5 393 SUPERFAMILY SSF111369 54 302 1.83E-84 T 17-10-2018 VI35_13970 7d5d3a278f7f8ad40d5d811e0626b6f5 393 Gene3D G3DSA:2.40.50.100 65 209 2.0E-114 T 17-10-2018 VI35_02905 121e3a718d0d3b6c1e1cfa48d8e6e1ae 368 Gene3D G3DSA:3.20.20.70 3 355 2.0E-89 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_02905 121e3a718d0d3b6c1e1cfa48d8e6e1ae 368 SUPERFAMILY SSF51395 14 336 1.28E-83 T 17-10-2018 VI35_02905 121e3a718d0d3b6c1e1cfa48d8e6e1ae 368 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 17 333 2.2E-52 T 17-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 VI35_12180 f5eb48416a885743db13c78af07e0bf9 291 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 3 55 4.5E-18 T 17-10-2018 IPR025713 Motility protein B, N-terminal domain VI35_12180 f5eb48416a885743db13c78af07e0bf9 291 Pfam PF00691 OmpA family 172 270 1.0E-11 T 17-10-2018 IPR006665 OmpA-like domain VI35_12180 f5eb48416a885743db13c78af07e0bf9 291 SUPERFAMILY SSF103088 159 276 1.57E-26 T 17-10-2018 IPR036737 OmpA-like domain superfamily VI35_12180 f5eb48416a885743db13c78af07e0bf9 291 Gene3D G3DSA:3.30.1330.60 131 278 9.3E-41 T 17-10-2018 IPR036737 OmpA-like domain superfamily VI35_01260 1d3c44c0151896f84119d97811218689 312 Hamap MF_00215 Pantothenate kinase [coaA]. 1 312 182.199 T 17-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 VI35_01260 1d3c44c0151896f84119d97811218689 312 TIGRFAM TIGR00554 panK_bact: pantothenate kinase 7 312 5.5E-154 T 17-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 VI35_01260 1d3c44c0151896f84119d97811218689 312 Gene3D G3DSA:3.40.50.300 5 312 2.0E-95 T 17-10-2018 VI35_01260 1d3c44c0151896f84119d97811218689 312 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 86 239 2.4E-14 T 17-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 VI35_01260 1d3c44c0151896f84119d97811218689 312 SUPERFAMILY SSF52540 3 312 4.12E-76 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_01260 1d3c44c0151896f84119d97811218689 312 PIRSF PIRSF000545 1 312 2.9E-147 T 17-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 VI35_04940 0ccfe2730f54205950ccb718f90340c2 454 ProSitePatterns PS01276 Peptidase family U32 signature. 162 180 - T 17-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 VI35_04940 0ccfe2730f54205950ccb718f90340c2 454 Pfam PF01136 Peptidase family U32 76 344 4.9E-96 T 17-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 VI35_04940 0ccfe2730f54205950ccb718f90340c2 454 Pfam PF16325 Peptidase family U32 C-terminal domain 359 439 5.9E-21 T 17-10-2018 IPR032525 Peptidase family U32, C-terminal VI35_04940 0ccfe2730f54205950ccb718f90340c2 454 Gene3D G3DSA:2.40.30.10 355 440 2.1E-10 T 17-10-2018 VI35_01675 ede7febdd7987afdbcf154063db4f207 219 Gene3D G3DSA:1.10.10.10 156 218 3.0E-24 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_01675 ede7febdd7987afdbcf154063db4f207 219 Gene3D G3DSA:3.40.50.2300 13 151 4.7E-30 T 17-10-2018 VI35_01675 ede7febdd7987afdbcf154063db4f207 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 175 191 3.2E-13 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_01675 ede7febdd7987afdbcf154063db4f207 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 191 203 3.2E-13 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_01675 ede7febdd7987afdbcf154063db4f207 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 161 175 3.2E-13 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_01675 ede7febdd7987afdbcf154063db4f207 219 Pfam PF00196 Bacterial regulatory proteins, luxR family 160 215 1.1E-20 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_01675 ede7febdd7987afdbcf154063db4f207 219 ProSitePatterns PS00622 LuxR-type HTH domain signature. 175 202 - T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_01675 ede7febdd7987afdbcf154063db4f207 219 SMART SM00421 158 215 5.5E-23 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_01675 ede7febdd7987afdbcf154063db4f207 219 SUPERFAMILY SSF46894 150 217 3.74E-21 T 17-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VI35_17425 d1eb739fd49e6f64a5e751866f9d647f 142 Pfam PF10952 Protein of unknown function (DUF2753) 6 142 4.7E-62 T 17-10-2018 IPR020206 Uncharacterised protein family, VP2110 VI35_17425 d1eb739fd49e6f64a5e751866f9d647f 142 ProDom PD087558 YRN2_VIBPA ORF2 VV1184 VV13101 MOTY 3'REGION VC1009 VP2110 4 141 9.0E-32 T 17-10-2018 IPR020206 Uncharacterised protein family, VP2110 VI35_10500 f4caee0b4e2a5f294f036ef25fb6c4ac 243 Pfam PF13280 WYL domain 140 225 7.7E-14 T 17-10-2018 IPR026881 WYL domain VI35_10500 f4caee0b4e2a5f294f036ef25fb6c4ac 243 SUPERFAMILY SSF46785 5 63 1.07E-9 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_10500 f4caee0b4e2a5f294f036ef25fb6c4ac 243 Pfam PF08279 HTH domain 8 61 2.1E-14 T 17-10-2018 IPR013196 Helix-turn-helix, type 11 VI35_10500 f4caee0b4e2a5f294f036ef25fb6c4ac 243 Gene3D G3DSA:1.10.10.10 1 65 3.0E-14 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_20460 f509bc4f8e6fec4f117fc058f02e998f 231 SMART SM00862 151 227 5.9E-22 T 17-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VI35_20460 f509bc4f8e6fec4f117fc058f02e998f 231 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 226 2.4E-19 T 17-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VI35_20460 f509bc4f8e6fec4f117fc058f02e998f 231 SMART SM00448 2 112 3.4E-45 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_20460 f509bc4f8e6fec4f117fc058f02e998f 231 SUPERFAMILY SSF52172 2 124 8.25E-43 T 17-10-2018 IPR011006 CheY-like superfamily VI35_20460 f509bc4f8e6fec4f117fc058f02e998f 231 Pfam PF00072 Response regulator receiver domain 4 113 9.4E-32 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_20460 f509bc4f8e6fec4f117fc058f02e998f 231 Gene3D G3DSA:3.40.50.2300 1 131 2.1E-40 T 17-10-2018 VI35_20460 f509bc4f8e6fec4f117fc058f02e998f 231 SUPERFAMILY SSF46894 128 228 2.55E-24 T 17-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VI35_20460 f509bc4f8e6fec4f117fc058f02e998f 231 Gene3D G3DSA:1.10.10.10 132 231 2.9E-27 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_19425 61cf8531b196d09a35c34e384ee9bd01 190 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 7 29 4.6E-5 T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_19425 61cf8531b196d09a35c34e384ee9bd01 190 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 8 28 - T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_19425 61cf8531b196d09a35c34e384ee9bd01 190 Pfam PF07963 Prokaryotic N-terminal methylation motif 6 30 4.3E-6 T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_15530 d58de0d0e17d78cb14dea0d694462158 185 Pfam PF01765 Ribosome recycling factor 20 183 1.5E-63 T 17-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 VI35_15530 d58de0d0e17d78cb14dea0d694462158 185 Gene3D G3DSA:3.30.1360.40 31 105 4.1E-67 T 17-10-2018 VI35_15530 d58de0d0e17d78cb14dea0d694462158 185 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 185 27.528 T 17-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 VI35_15530 d58de0d0e17d78cb14dea0d694462158 185 Gene3D G3DSA:1.10.132.20 12 182 4.1E-67 T 17-10-2018 VI35_15530 d58de0d0e17d78cb14dea0d694462158 185 TIGRFAM TIGR00496 frr: ribosome recycling factor 10 185 7.0E-74 T 17-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 VI35_15530 d58de0d0e17d78cb14dea0d694462158 185 SUPERFAMILY SSF55194 2 184 6.67E-70 T 17-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 VI35_03265 b0a4ae598230ee855019f107d2dcd339 193 Pfam PF08281 Sigma-70, region 4 135 182 3.5E-19 T 17-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VI35_03265 b0a4ae598230ee855019f107d2dcd339 193 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 22 187 2.7E-34 T 17-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 VI35_03265 b0a4ae598230ee855019f107d2dcd339 193 Pfam PF04542 Sigma-70 region 2 26 93 2.3E-19 T 17-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 VI35_03265 b0a4ae598230ee855019f107d2dcd339 193 SUPERFAMILY SSF88946 8 106 6.59E-32 T 17-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 VI35_03265 b0a4ae598230ee855019f107d2dcd339 193 Gene3D G3DSA:1.10.10.10 124 193 6.5E-24 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_03265 b0a4ae598230ee855019f107d2dcd339 193 SUPERFAMILY SSF88659 125 187 6.73E-19 T 17-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VI35_03265 b0a4ae598230ee855019f107d2dcd339 193 Gene3D G3DSA:1.10.1740.10 1 122 4.7E-44 T 17-10-2018 VI35_03265 b0a4ae598230ee855019f107d2dcd339 193 TIGRFAM TIGR02939 RpoE_Sigma70: RNA polymerase sigma factor RpoE 3 191 3.6E-101 T 17-10-2018 IPR014286 RNA polymerase sigma-70 RpoE type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VI35_03265 b0a4ae598230ee855019f107d2dcd339 193 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 48 79 - T 17-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VI35_02865 c4d345fbb28f54b8a9e5c953e3eaa7b6 213 Gene3D G3DSA:2.10.70.20 157 206 2.8E-12 T 17-10-2018 VI35_02865 c4d345fbb28f54b8a9e5c953e3eaa7b6 213 TIGRFAM TIGR01711 gspJ: type II secretion system protein J 12 203 5.1E-97 T 17-10-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 VI35_02865 c4d345fbb28f54b8a9e5c953e3eaa7b6 213 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 12 32 - T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_02865 c4d345fbb28f54b8a9e5c953e3eaa7b6 213 Pfam PF07963 Prokaryotic N-terminal methylation motif 10 34 2.8E-9 T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_02865 c4d345fbb28f54b8a9e5c953e3eaa7b6 213 SUPERFAMILY SSF54523 14 56 9.42E-5 T 17-10-2018 VI35_02865 c4d345fbb28f54b8a9e5c953e3eaa7b6 213 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 12 34 4.2E-9 T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_02865 c4d345fbb28f54b8a9e5c953e3eaa7b6 213 Pfam PF11612 Type II secretion system (T2SS), protein J 64 200 1.9E-39 T 17-10-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 VI35_02865 c4d345fbb28f54b8a9e5c953e3eaa7b6 213 SUPERFAMILY SSF54523 45 202 2.59E-49 T 17-10-2018 VI35_02865 c4d345fbb28f54b8a9e5c953e3eaa7b6 213 Gene3D G3DSA:3.10.610.10 43 155 2.1E-35 T 17-10-2018 VI35_19475 093f2e86b6f094e3cecc415eb993d78e 558 Pfam PF07655 Secretin N-terminal domain 148 250 3.5E-26 T 17-10-2018 IPR011514 Secretin, N-terminal GO:0009297|GO:0019867 VI35_19475 093f2e86b6f094e3cecc415eb993d78e 558 Gene3D G3DSA:3.55.50.30 54 151 6.0E-9 T 17-10-2018 VI35_19475 093f2e86b6f094e3cecc415eb993d78e 558 PRINTS PR00811 Bacterial general secretion pathway protein D signature 499 517 4.8E-16 T 17-10-2018 IPR001775 GspD/PilQ family VI35_19475 093f2e86b6f094e3cecc415eb993d78e 558 PRINTS PR00811 Bacterial general secretion pathway protein D signature 522 536 4.8E-16 T 17-10-2018 IPR001775 GspD/PilQ family VI35_19475 093f2e86b6f094e3cecc415eb993d78e 558 PRINTS PR00811 Bacterial general secretion pathway protein D signature 279 289 4.8E-16 T 17-10-2018 IPR001775 GspD/PilQ family VI35_19475 093f2e86b6f094e3cecc415eb993d78e 558 PRINTS PR00811 Bacterial general secretion pathway protein D signature 351 375 4.8E-16 T 17-10-2018 IPR001775 GspD/PilQ family VI35_19475 093f2e86b6f094e3cecc415eb993d78e 558 SMART SM00965 96 144 2.3E-5 T 17-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 VI35_19475 093f2e86b6f094e3cecc415eb993d78e 558 Pfam PF00263 Bacterial type II and III secretion system protein 356 535 3.9E-38 T 17-10-2018 IPR004846 Type II/III secretion system GO:0009306 VI35_19475 093f2e86b6f094e3cecc415eb993d78e 558 TIGRFAM TIGR02519 pilus_MshL: pilus (MSHA type) biogenesis protein MshL 245 534 8.0E-86 T 17-10-2018 IPR013358 Pilus biogenesis, MshL VI35_01325 30ca692dc6f3afd6a64169c1390951a0 238 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 27 139 3.0E-35 T 17-10-2018 IPR013559 YheO-like VI35_01325 30ca692dc6f3afd6a64169c1390951a0 238 Pfam PF13309 HTH domain 171 228 9.7E-18 T 17-10-2018 IPR039445 Transcriptional regulator DauR-like, HTH domain VI35_01325 30ca692dc6f3afd6a64169c1390951a0 238 Pfam PF08348 YheO-like PAS domain 28 136 5.6E-36 T 17-10-2018 IPR013559 YheO-like VI35_18420 f380a88ff3d77f00f08d78420b37d975 275 SUPERFAMILY SSF56601 6 274 3.67E-65 T 17-10-2018 IPR012338 Beta-lactamase/transpeptidase-like VI35_18420 f380a88ff3d77f00f08d78420b37d975 275 Gene3D G3DSA:3.40.710.10 17 275 4.1E-70 T 17-10-2018 VI35_18420 f380a88ff3d77f00f08d78420b37d975 275 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 62 73 3.4E-12 T 17-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 VI35_18420 f380a88ff3d77f00f08d78420b37d975 275 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 112 129 3.4E-12 T 17-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 VI35_18420 f380a88ff3d77f00f08d78420b37d975 275 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 139 152 3.4E-12 T 17-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 VI35_18420 f380a88ff3d77f00f08d78420b37d975 275 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 30 256 1.6E-65 T 17-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 VI35_12610 0514350574c8a6fdc212168433981576 160 SUPERFAMILY SSF56524 38 158 2.09E-16 T 17-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 VI35_20140 0c64d8dd7429e04e32503b9885c973d3 170 SUPERFAMILY SSF56420 2 164 3.27E-63 T 17-10-2018 IPR036821 Peptide deformylase superfamily VI35_20140 0c64d8dd7429e04e32503b9885c973d3 170 Gene3D G3DSA:3.90.45.10 2 169 1.0E-65 T 17-10-2018 IPR036821 Peptide deformylase superfamily VI35_20140 0c64d8dd7429e04e32503b9885c973d3 170 Pfam PF01327 Polypeptide deformylase 5 152 1.3E-50 T 17-10-2018 IPR023635 Peptide deformylase VI35_20140 0c64d8dd7429e04e32503b9885c973d3 170 PRINTS PR01576 Peptide deformylase signature 120 149 1.1E-36 T 17-10-2018 IPR023635 Peptide deformylase VI35_20140 0c64d8dd7429e04e32503b9885c973d3 170 PRINTS PR01576 Peptide deformylase signature 89 100 1.1E-36 T 17-10-2018 IPR023635 Peptide deformylase VI35_20140 0c64d8dd7429e04e32503b9885c973d3 170 PRINTS PR01576 Peptide deformylase signature 101 119 1.1E-36 T 17-10-2018 IPR023635 Peptide deformylase VI35_20140 0c64d8dd7429e04e32503b9885c973d3 170 PRINTS PR01576 Peptide deformylase signature 33 62 1.1E-36 T 17-10-2018 IPR023635 Peptide deformylase VI35_20140 0c64d8dd7429e04e32503b9885c973d3 170 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 4 160 5.0E-63 T 17-10-2018 IPR023635 Peptide deformylase VI35_20140 0c64d8dd7429e04e32503b9885c973d3 170 Hamap MF_00163 Peptide deformylase [def]. 2 162 30.825 T 17-10-2018 IPR023635 Peptide deformylase VI35_20140 0c64d8dd7429e04e32503b9885c973d3 170 PIRSF PIRSF004749 1 169 2.0E-57 T 17-10-2018 IPR023635 Peptide deformylase VI35_12810 2b43fb0096d5635d6833e555e83492e9 240 SUPERFAMILY SSF48317 19 237 1.96E-27 T 17-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily VI35_12810 2b43fb0096d5635d6833e555e83492e9 240 Gene3D G3DSA:1.20.144.10 6 240 4.4E-48 T 17-10-2018 VI35_12810 2b43fb0096d5635d6833e555e83492e9 240 SMART SM00014 85 233 1.2E-21 T 17-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase VI35_12810 2b43fb0096d5635d6833e555e83492e9 240 Pfam PF01569 PAP2 superfamily 89 238 2.5E-22 T 17-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase VI35_04065 1f2b2259c28b0b69e5702c614e3b2cd6 366 Pfam PF00267 Gram-negative porin 28 366 5.6E-57 T 17-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 VI35_04065 1f2b2259c28b0b69e5702c614e3b2cd6 366 PRINTS PR00183 E.coli/Salmonella-type porin signature 22 38 2.0E-16 T 17-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 VI35_04065 1f2b2259c28b0b69e5702c614e3b2cd6 366 PRINTS PR00183 E.coli/Salmonella-type porin signature 240 257 2.0E-16 T 17-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 VI35_04065 1f2b2259c28b0b69e5702c614e3b2cd6 366 PRINTS PR00183 E.coli/Salmonella-type porin signature 91 113 2.0E-16 T 17-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 VI35_04065 1f2b2259c28b0b69e5702c614e3b2cd6 366 PRINTS PR00183 E.coli/Salmonella-type porin signature 272 291 2.0E-16 T 17-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 VI35_04065 1f2b2259c28b0b69e5702c614e3b2cd6 366 Gene3D G3DSA:2.40.160.10 22 366 2.8E-96 T 17-10-2018 IPR023614 Porin domain superfamily VI35_04065 1f2b2259c28b0b69e5702c614e3b2cd6 366 SUPERFAMILY SSF56935 22 366 3.92E-62 T 17-10-2018 VI35_02785 d7d6a6383a0b90a12bb9c2de65604be8 226 Gene3D G3DSA:1.20.58.220 1 226 9.4E-63 T 17-10-2018 IPR038078 PhoU-like domain superfamily VI35_02785 d7d6a6383a0b90a12bb9c2de65604be8 226 Pfam PF01865 Protein of unknown function DUF47 7 224 5.8E-65 T 17-10-2018 IPR018445 Putative phosphate transport regulator VI35_02785 d7d6a6383a0b90a12bb9c2de65604be8 226 SUPERFAMILY SSF109755 28 209 4.88E-16 T 17-10-2018 VI35_02785 d7d6a6383a0b90a12bb9c2de65604be8 226 TIGRFAM TIGR00153 TIGR00153: TIGR00153 family protein 5 226 4.8E-67 T 17-10-2018 IPR002727 Protein of unknown function DUF47 VI35_10170 0373a3499906359f4653e5c8c0bde558 329 Hamap MF_01944 Lipid A biosynthesis myristoyltransferase [lpxM]. 2 308 46.933 T 17-10-2018 IPR011921 Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016747 KEGG: 00540+2.3.1.243 VI35_10170 0373a3499906359f4653e5c8c0bde558 329 PIRSF PIRSF026649 7 312 4.5E-98 T 17-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 VI35_10170 0373a3499906359f4653e5c8c0bde558 329 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 11 301 2.4E-70 T 17-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 VI35_18590 4f5632c7ae2fe7d68bb7cb615e9e5d2c 220 TIGRFAM TIGR02977 phageshock_pspA: phage shock protein A 1 217 8.3E-82 T 17-10-2018 IPR014319 Phage shock protein, PspA VI35_18590 4f5632c7ae2fe7d68bb7cb615e9e5d2c 220 Pfam PF04012 PspA/IM30 family 2 218 1.2E-37 T 17-10-2018 IPR007157 PspA/IM30 VI35_21165 936842093a51e48298b1ff1eccbfe2b2 208 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 13 201 27.587 T 17-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 VI35_21165 936842093a51e48298b1ff1eccbfe2b2 208 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 25 202 8.1E-58 T 17-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 VI35_21165 936842093a51e48298b1ff1eccbfe2b2 208 Gene3D G3DSA:3.40.50.150 1 205 7.6E-67 T 17-10-2018 VI35_21165 936842093a51e48298b1ff1eccbfe2b2 208 Pfam PF02527 rRNA small subunit methyltransferase G 20 199 2.6E-62 T 17-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 VI35_21165 936842093a51e48298b1ff1eccbfe2b2 208 PIRSF PIRSF003078 1 207 2.8E-61 T 17-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 VI35_21165 936842093a51e48298b1ff1eccbfe2b2 208 SUPERFAMILY SSF53335 4 205 9.53E-41 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_00830 9ec4142ebde9c63538c489f97a4d29f4 224 Hamap MF_02088 Probable queuosine precursor transporter. 6 208 15.572 T 17-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 VI35_00830 9ec4142ebde9c63538c489f97a4d29f4 224 Pfam PF02592 Putative vitamin uptake transporter 42 198 1.8E-35 T 17-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 VI35_00830 9ec4142ebde9c63538c489f97a4d29f4 224 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 12 202 4.8E-61 T 17-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 VI35_13670 b6b91d72ce9215e87d2eb81c3e670dfb 227 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 93 225 3.7E-36 T 17-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal VI35_13670 b6b91d72ce9215e87d2eb81c3e670dfb 227 SMART SM00858 105 167 2.2E-9 T 17-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 VI35_13670 b6b91d72ce9215e87d2eb81c3e670dfb 227 Pfam PF13144 Chaperone for flagella basal body P-ring formation 27 225 2.5E-49 T 17-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal VI35_13670 b6b91d72ce9215e87d2eb81c3e670dfb 227 Gene3D G3DSA:2.30.30.760 169 226 1.8E-14 T 17-10-2018 VI35_14935 750aad5cadea78ccd808dfab06452c5b 493 SMART SM00155 228 255 1.6E-5 T 17-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 VI35_14935 750aad5cadea78ccd808dfab06452c5b 493 SMART SM00155 406 433 9.9E-5 T 17-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 VI35_14935 750aad5cadea78ccd808dfab06452c5b 493 Gene3D G3DSA:3.30.870.10 323 465 1.4E-25 T 17-10-2018 VI35_14935 750aad5cadea78ccd808dfab06452c5b 493 Hamap MF_00190 Cardiolipin synthase A [clsA]. 11 493 50.56 T 17-10-2018 IPR030840 Cardiolipin synthase A GO:0008808|GO:0016780|GO:0032049 VI35_14935 750aad5cadea78ccd808dfab06452c5b 493 SUPERFAMILY SSF56024 98 322 2.35E-50 T 17-10-2018 VI35_14935 750aad5cadea78ccd808dfab06452c5b 493 Pfam PF13091 PLD-like domain 144 256 2.9E-13 T 17-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 VI35_14935 750aad5cadea78ccd808dfab06452c5b 493 Pfam PF13091 PLD-like domain 336 458 3.8E-24 T 17-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 VI35_14935 750aad5cadea78ccd808dfab06452c5b 493 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 17 493 2.3E-127 T 17-10-2018 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 VI35_14935 750aad5cadea78ccd808dfab06452c5b 493 Gene3D G3DSA:3.30.870.10 123 316 2.5E-35 T 17-10-2018 VI35_14935 750aad5cadea78ccd808dfab06452c5b 493 SUPERFAMILY SSF56024 281 479 6.5E-43 T 17-10-2018 VI35_04410 c2a1e88d15abc78b65ac2ff06a702af2 483 Pfam PF07687 Peptidase dimerisation domain 208 288 5.8E-5 T 17-10-2018 IPR011650 Peptidase M20, dimerisation domain VI35_04410 c2a1e88d15abc78b65ac2ff06a702af2 483 PIRSF PIRSF016599 1 483 8.7E-203 T 17-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 VI35_04410 c2a1e88d15abc78b65ac2ff06a702af2 483 Gene3D G3DSA:3.40.630.10 1 235 1.0E-62 T 17-10-2018 VI35_04410 c2a1e88d15abc78b65ac2ff06a702af2 483 TIGRFAM TIGR01893 aa-his-dipept: Xaa-His dipeptidase 8 480 4.5E-178 T 17-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 VI35_04410 c2a1e88d15abc78b65ac2ff06a702af2 483 Gene3D G3DSA:3.40.630.10 376 483 6.3E-23 T 17-10-2018 VI35_04410 c2a1e88d15abc78b65ac2ff06a702af2 483 Pfam PF01546 Peptidase family M20/M25/M40 73 478 5.8E-24 T 17-10-2018 IPR002933 Peptidase M20 GO:0016787 VI35_04410 c2a1e88d15abc78b65ac2ff06a702af2 483 PRINTS PR00934 X-His dipeptidase (M25) signature 80 99 2.5E-81 T 17-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 VI35_04410 c2a1e88d15abc78b65ac2ff06a702af2 483 PRINTS PR00934 X-His dipeptidase (M25) signature 249 268 2.5E-81 T 17-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 VI35_04410 c2a1e88d15abc78b65ac2ff06a702af2 483 PRINTS PR00934 X-His dipeptidase (M25) signature 159 177 2.5E-81 T 17-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 VI35_04410 c2a1e88d15abc78b65ac2ff06a702af2 483 PRINTS PR00934 X-His dipeptidase (M25) signature 205 222 2.5E-81 T 17-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 VI35_04410 c2a1e88d15abc78b65ac2ff06a702af2 483 PRINTS PR00934 X-His dipeptidase (M25) signature 448 470 2.5E-81 T 17-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 VI35_04410 c2a1e88d15abc78b65ac2ff06a702af2 483 PRINTS PR00934 X-His dipeptidase (M25) signature 135 152 2.5E-81 T 17-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 VI35_04410 c2a1e88d15abc78b65ac2ff06a702af2 483 PRINTS PR00934 X-His dipeptidase (M25) signature 361 379 2.5E-81 T 17-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 VI35_04410 c2a1e88d15abc78b65ac2ff06a702af2 483 PRINTS PR00934 X-His dipeptidase (M25) signature 101 119 2.5E-81 T 17-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 VI35_04410 c2a1e88d15abc78b65ac2ff06a702af2 483 PRINTS PR00934 X-His dipeptidase (M25) signature 426 442 2.5E-81 T 17-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 VI35_04410 c2a1e88d15abc78b65ac2ff06a702af2 483 SUPERFAMILY SSF53187 12 480 5.47E-63 T 17-10-2018 VI35_06130 5566c15a3762cc6249b6de1b00c93e41 348 SUPERFAMILY SSF55729 138 285 7.16E-28 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_06130 5566c15a3762cc6249b6de1b00c93e41 348 Gene3D G3DSA:3.40.630.30 135 292 7.2E-28 T 17-10-2018 VI35_06130 5566c15a3762cc6249b6de1b00c93e41 348 Pfam PF13302 Acetyltransferase (GNAT) domain 139 278 1.9E-21 T 17-10-2018 IPR000182 GNAT domain VI35_05900 4e1b6588249f29543237832caf694bf3 146 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 5 139 1.8E-24 T 17-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 VI35_05900 4e1b6588249f29543237832caf694bf3 146 Pfam PF02050 Flagellar FliJ protein 17 139 1.9E-26 T 17-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 VI35_05765 825ec12a6e1ebc3d746232d2250436a0 390 Gene3D G3DSA:1.20.1250.20 209 389 6.8E-22 T 17-10-2018 VI35_05765 825ec12a6e1ebc3d746232d2250436a0 390 Gene3D G3DSA:1.20.1250.20 13 197 4.7E-18 T 17-10-2018 VI35_05765 825ec12a6e1ebc3d746232d2250436a0 390 Pfam PF07690 Major Facilitator Superfamily 19 343 2.3E-31 T 17-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VI35_05765 825ec12a6e1ebc3d746232d2250436a0 390 SUPERFAMILY SSF103473 12 388 4.45E-50 T 17-10-2018 IPR036259 MFS transporter superfamily VI35_11300 fcf76294a530c8d5e45c50bc8c310830 163 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 5 92 7.9E-14 T 17-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 VI35_11300 fcf76294a530c8d5e45c50bc8c310830 163 SUPERFAMILY SSF53254 1 146 2.36E-28 T 17-10-2018 IPR029033 Histidine phosphatase superfamily VI35_11300 fcf76294a530c8d5e45c50bc8c310830 163 Gene3D G3DSA:3.40.50.1240 1 158 1.5E-39 T 17-10-2018 IPR029033 Histidine phosphatase superfamily VI35_13190 52f4dc49cf77591a4fcfa9b542f0d08f 75 SMART SM00899 1 74 2.5E-20 T 17-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 VI35_13190 52f4dc49cf77591a4fcfa9b542f0d08f 75 Pfam PF04023 FeoA domain 1 74 1.7E-15 T 17-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 VI35_13190 52f4dc49cf77591a4fcfa9b542f0d08f 75 Gene3D G3DSA:2.30.30.90 1 75 5.8E-20 T 17-10-2018 IPR038157 Ferrous iron transporter, core domain VI35_13190 52f4dc49cf77591a4fcfa9b542f0d08f 75 SUPERFAMILY SSF50037 5 74 9.46E-18 T 17-10-2018 IPR008988 Transcriptional repressor, C-terminal VI35_00980 c5f29944b9fd3044070a279e5acdfcfd 328 Pfam PF13407 Periplasmic binding protein domain 26 297 4.1E-63 T 17-10-2018 IPR025997 Periplasmic binding protein VI35_00980 c5f29944b9fd3044070a279e5acdfcfd 328 SUPERFAMILY SSF53822 23 327 3.34E-84 T 17-10-2018 IPR028082 Periplasmic binding protein-like I VI35_00980 c5f29944b9fd3044070a279e5acdfcfd 328 Gene3D G3DSA:3.40.50.2300 26 299 3.9E-116 T 17-10-2018 VI35_00980 c5f29944b9fd3044070a279e5acdfcfd 328 Gene3D G3DSA:3.40.50.2300 132 277 3.9E-116 T 17-10-2018 VI35_20865 9428245ee535725eafd3668a5d2960a4 257 Gene3D G3DSA:3.40.50.300 3 257 5.4E-61 T 17-10-2018 VI35_20865 9428245ee535725eafd3668a5d2960a4 257 SMART SM00382 32 233 6.2E-11 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_20865 9428245ee535725eafd3668a5d2960a4 257 SUPERFAMILY SSF52540 6 255 4.51E-62 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_20865 9428245ee535725eafd3668a5d2960a4 257 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 235 255 7.6E-11 T 17-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal VI35_20865 9428245ee535725eafd3668a5d2960a4 257 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_20865 9428245ee535725eafd3668a5d2960a4 257 Pfam PF00005 ABC transporter 24 183 8.3E-33 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_06055 6b2fd075e795e9884050992b52831d3f 160 Gene3D G3DSA:1.10.8.640 22 106 3.9E-37 T 17-10-2018 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily VI35_06055 6b2fd075e795e9884050992b52831d3f 160 Pfam PF03918 Cytochrome C biogenesis protein 11 154 1.9E-55 T 17-10-2018 IPR005616 CcmH/CycL/Ccl2/NrfF family VI35_02690 470a5ebc2efaa3525c4d50f7694efc43 405 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 1 403 47.947 T 17-10-2018 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 VI35_02690 470a5ebc2efaa3525c4d50f7694efc43 405 SUPERFAMILY SSF51161 293 403 2.36E-20 T 17-10-2018 IPR011004 Trimeric LpxA-like superfamily VI35_02690 470a5ebc2efaa3525c4d50f7694efc43 405 SUPERFAMILY SSF53448 5 357 2.82E-68 T 17-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VI35_02690 470a5ebc2efaa3525c4d50f7694efc43 405 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 5 377 5.8E-147 T 17-10-2018 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 VI35_02690 470a5ebc2efaa3525c4d50f7694efc43 405 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 193 203 - T 17-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 VI35_02690 470a5ebc2efaa3525c4d50f7694efc43 405 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 95 103 - T 17-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 VI35_02690 470a5ebc2efaa3525c4d50f7694efc43 405 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 10 29 - T 17-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 VI35_02690 470a5ebc2efaa3525c4d50f7694efc43 405 Gene3D G3DSA:3.90.550.10 2 286 3.5E-80 T 17-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VI35_02690 470a5ebc2efaa3525c4d50f7694efc43 405 Gene3D G3DSA:2.160.10.10 287 403 1.6E-36 T 17-10-2018 VI35_02690 470a5ebc2efaa3525c4d50f7694efc43 405 Pfam PF00483 Nucleotidyl transferase 6 271 2.3E-63 T 17-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 VI35_02690 470a5ebc2efaa3525c4d50f7694efc43 405 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 329 361 0.0015 T 17-10-2018 IPR001451 Hexapeptide repeat VI35_19125 c32a420be62707b0c3517add2c8650c9 83 Pfam PF03692 Putative zinc- or iron-chelating domain 2 60 5.4E-6 T 17-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein VI35_11935 4dbdbfb592c4e482fa1d3d6c99780087 724 PRINTS PR00458 Haem peroxidase superfamily signature 249 264 9.4E-20 T 17-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 VI35_11935 4dbdbfb592c4e482fa1d3d6c99780087 724 PRINTS PR00458 Haem peroxidase superfamily signature 308 323 9.4E-20 T 17-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 VI35_11935 4dbdbfb592c4e482fa1d3d6c99780087 724 PRINTS PR00458 Haem peroxidase superfamily signature 143 160 9.4E-20 T 17-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 VI35_11935 4dbdbfb592c4e482fa1d3d6c99780087 724 PRINTS PR00458 Haem peroxidase superfamily signature 83 97 9.4E-20 T 17-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 VI35_11935 4dbdbfb592c4e482fa1d3d6c99780087 724 PRINTS PR00458 Haem peroxidase superfamily signature 161 173 9.4E-20 T 17-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 VI35_11935 4dbdbfb592c4e482fa1d3d6c99780087 724 Gene3D G3DSA:1.10.420.20 184 387 3.6E-212 T 17-10-2018 VI35_11935 4dbdbfb592c4e482fa1d3d6c99780087 724 Gene3D G3DSA:1.10.520.10 13 420 3.6E-212 T 17-10-2018 VI35_11935 4dbdbfb592c4e482fa1d3d6c99780087 724 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 45 58 2.4E-54 T 17-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 VI35_11935 4dbdbfb592c4e482fa1d3d6c99780087 724 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 60 85 2.4E-54 T 17-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 VI35_11935 4dbdbfb592c4e482fa1d3d6c99780087 724 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 19 41 2.4E-54 T 17-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 VI35_11935 4dbdbfb592c4e482fa1d3d6c99780087 724 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 257 280 2.4E-54 T 17-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 VI35_11935 4dbdbfb592c4e482fa1d3d6c99780087 724 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 470 496 2.4E-54 T 17-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 VI35_11935 4dbdbfb592c4e482fa1d3d6c99780087 724 TIGRFAM TIGR00198 cat_per_HPI: catalase/peroxidase HPI 5 723 0.0 T 17-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 VI35_11935 4dbdbfb592c4e482fa1d3d6c99780087 724 SUPERFAMILY SSF48113 420 723 1.27E-113 T 17-10-2018 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 VI35_11935 4dbdbfb592c4e482fa1d3d6c99780087 724 Pfam PF00141 Peroxidase 392 697 1.9E-40 T 17-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 VI35_11935 4dbdbfb592c4e482fa1d3d6c99780087 724 Pfam PF00141 Peroxidase 74 385 5.1E-46 T 17-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 VI35_11935 4dbdbfb592c4e482fa1d3d6c99780087 724 ProSitePatterns PS00435 Peroxidases proximal heme-ligand signature. 249 259 - T 17-10-2018 IPR019793 Peroxidases heam-ligand binding site Reactome: R-HSA-2408557 VI35_11935 4dbdbfb592c4e482fa1d3d6c99780087 724 Gene3D G3DSA:1.10.520.10 423 723 1.2E-148 T 17-10-2018 VI35_11935 4dbdbfb592c4e482fa1d3d6c99780087 724 Hamap MF_01961 Catalase-peroxidase [katG]. 2 724 41.697 T 17-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 VI35_11935 4dbdbfb592c4e482fa1d3d6c99780087 724 Gene3D G3DSA:1.10.420.10 578 699 1.2E-148 T 17-10-2018 VI35_11935 4dbdbfb592c4e482fa1d3d6c99780087 724 SUPERFAMILY SSF48113 15 419 2.06E-145 T 17-10-2018 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 VI35_11935 4dbdbfb592c4e482fa1d3d6c99780087 724 ProSitePatterns PS00436 Peroxidases active site signature. 83 94 - T 17-10-2018 IPR019794 Peroxidase, active site GO:0004601|GO:0055114 VI35_19020 a315496fce74281a062b9d33bbb65b7f 434 Pfam PF13487 HD domain 241 301 1.3E-11 T 17-10-2018 VI35_19020 a315496fce74281a062b9d33bbb65b7f 434 Gene3D G3DSA:1.10.3210.10 45 346 3.8E-50 T 17-10-2018 VI35_19020 a315496fce74281a062b9d33bbb65b7f 434 Pfam PF11871 Domain of unknown function (DUF3391) 24 157 2.9E-29 T 17-10-2018 IPR021812 Protein of unknown function DUF3391 VI35_19020 a315496fce74281a062b9d33bbb65b7f 434 SUPERFAMILY SSF109604 186 345 8.08E-23 T 17-10-2018 VI35_19020 a315496fce74281a062b9d33bbb65b7f 434 TIGRFAM TIGR00277 HDIG: HDIG domain 192 280 1.7E-8 T 17-10-2018 IPR006675 HDIG domain VI35_06770 cf6f591374e9dfb8e290e2f358604e37 307 Pfam PF01933 Uncharacterised protein family UPF0052 12 289 6.2E-75 T 17-10-2018 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 VI35_06770 cf6f591374e9dfb8e290e2f358604e37 307 Gene3D G3DSA:3.40.50.12300 9 300 3.8E-79 T 17-10-2018 IPR038136 Gluconeogenesis factor superfamily VI35_06770 cf6f591374e9dfb8e290e2f358604e37 307 TIGRFAM TIGR01826 CofD_related: conserved hypothetical protein 12 258 7.5E-94 T 17-10-2018 IPR010119 Gluconeogenesis factor VI35_06770 cf6f591374e9dfb8e290e2f358604e37 307 SUPERFAMILY SSF142338 11 292 1.7E-83 T 17-10-2018 VI35_06770 cf6f591374e9dfb8e290e2f358604e37 307 Hamap MF_00973 Gluconeogenesis factor. 8 298 31.056 T 17-10-2018 IPR010119 Gluconeogenesis factor VI35_14915 02597d388d70d1289a2e49f928365d1e 80 PIRSF PIRSF002855 1 80 3.2E-23 T 17-10-2018 IPR016367 Murein-lipoprotein VI35_14915 02597d388d70d1289a2e49f928365d1e 80 Pfam PF04728 Lipoprotein leucine-zipper 29 80 2.7E-17 T 17-10-2018 IPR006817 Lipoprotein leucine-zipper GO:0019867 VI35_14915 02597d388d70d1289a2e49f928365d1e 80 SUPERFAMILY SSF58042 18 79 7.33E-19 T 17-10-2018 VI35_14915 02597d388d70d1289a2e49f928365d1e 80 Gene3D G3DSA:1.20.5.190 19 79 4.0E-19 T 17-10-2018 VI35_10785 880af8cb528df25d385a835d67d7e6c4 55 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 54 1.4E-19 T 17-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_10785 880af8cb528df25d385a835d67d7e6c4 55 SUPERFAMILY SSF57829 2 54 5.62E-18 T 17-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 VI35_10785 880af8cb528df25d385a835d67d7e6c4 55 Pfam PF01783 Ribosomal L32p protein family 2 54 6.8E-19 T 17-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_10785 880af8cb528df25d385a835d67d7e6c4 55 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 54 17.594 T 17-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_12600 796bc2a67bb007584507b3364b619a84 301 SUPERFAMILY SSF53850 89 291 1.12E-44 T 17-10-2018 VI35_12600 796bc2a67bb007584507b3364b619a84 301 Pfam PF03466 LysR substrate binding domain 88 289 6.4E-45 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_12600 796bc2a67bb007584507b3364b619a84 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 4.6E-20 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_12600 796bc2a67bb007584507b3364b619a84 301 SUPERFAMILY SSF46785 3 112 1.5E-23 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_12600 796bc2a67bb007584507b3364b619a84 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 4.9E-6 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_12600 796bc2a67bb007584507b3364b619a84 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 4.9E-6 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_12600 796bc2a67bb007584507b3364b619a84 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 4.9E-6 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_12600 796bc2a67bb007584507b3364b619a84 301 Gene3D G3DSA:1.10.10.10 3 89 2.9E-25 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_12600 796bc2a67bb007584507b3364b619a84 301 Gene3D G3DSA:3.40.190.290 91 292 7.7E-60 T 17-10-2018 VI35_20005 c40498f0df4b6cca8b2040b963bd4193 169 Pfam PF01202 Shikimate kinase 13 121 4.3E-10 T 17-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 VI35_20005 c40498f0df4b6cca8b2040b963bd4193 169 Gene3D G3DSA:3.40.50.300 2 169 6.2E-64 T 17-10-2018 VI35_20005 c40498f0df4b6cca8b2040b963bd4193 169 SUPERFAMILY SSF52540 3 167 3.95E-27 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_20005 c40498f0df4b6cca8b2040b963bd4193 169 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 6 164 2.8E-64 T 17-10-2018 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530 VI35_07615 d87488616c6074dda35a209381eb07f0 110 Pfam PF11742 Protein of unknown function (DUF3302) 3 78 1.1E-42 T 17-10-2018 IPR011223 Uncharacterised conserved protein UCP028770 VI35_07615 d87488616c6074dda35a209381eb07f0 110 PIRSF PIRSF028770 1 110 1.3E-54 T 17-10-2018 IPR011223 Uncharacterised conserved protein UCP028770 VI35_14820 99aa86070a44814fbf0a1e82b12b5331 447 Gene3D G3DSA:1.20.1740.10 7 437 3.2E-63 T 17-10-2018 VI35_14820 99aa86070a44814fbf0a1e82b12b5331 447 Pfam PF13520 Amino acid permease 44 404 1.7E-34 T 17-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VI35_14820 99aa86070a44814fbf0a1e82b12b5331 447 PIRSF PIRSF006060 1 447 3.0E-69 T 17-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VI35_10130 2fe33d36bb28228574e62ff5c75d9943 252 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 188 0.0056 T 17-10-2018 VI35_10130 2fe33d36bb28228574e62ff5c75d9943 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 4.4E-30 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_10130 2fe33d36bb28228574e62ff5c75d9943 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 4.4E-30 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_10130 2fe33d36bb28228574e62ff5c75d9943 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 4.4E-30 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_10130 2fe33d36bb28228574e62ff5c75d9943 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 4.4E-30 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_10130 2fe33d36bb28228574e62ff5c75d9943 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 4.4E-30 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_10130 2fe33d36bb28228574e62ff5c75d9943 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 4.4E-30 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_10130 2fe33d36bb28228574e62ff5c75d9943 252 Gene3D G3DSA:3.40.50.720 1 251 3.1E-70 T 17-10-2018 VI35_10130 2fe33d36bb28228574e62ff5c75d9943 252 SUPERFAMILY SSF51735 5 251 3.01E-69 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_10130 2fe33d36bb28228574e62ff5c75d9943 252 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 10 250 3.3E-54 T 17-10-2018 VI35_10130 2fe33d36bb28228574e62ff5c75d9943 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 3.4E-7 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_10130 2fe33d36bb28228574e62ff5c75d9943 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 3.4E-7 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_10130 2fe33d36bb28228574e62ff5c75d9943 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 3.4E-7 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_03100 03ba384bced11c422f896449faaa772c 196 SUPERFAMILY SSF51161 14 189 2.91E-51 T 17-10-2018 IPR011004 Trimeric LpxA-like superfamily VI35_03100 03ba384bced11c422f896449faaa772c 196 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 131 165 2.9E-11 T 17-10-2018 IPR001451 Hexapeptide repeat VI35_03100 03ba384bced11c422f896449faaa772c 196 Gene3D G3DSA:2.160.10.10 2 191 1.7E-64 T 17-10-2018 VI35_03100 03ba384bced11c422f896449faaa772c 196 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 139 167 - T 17-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 VI35_03100 03ba384bced11c422f896449faaa772c 196 SMART SM01266 5 59 1.2E-7 T 17-10-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 VI35_03100 03ba384bced11c422f896449faaa772c 196 Pfam PF12464 Maltose acetyltransferase 8 57 3.6E-5 T 17-10-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 VI35_14065 0511966d3d574f323c33c9f8a6ebd92f 438 TIGRFAM TIGR03071 couple_hipA: HipA N-terminal domain 10 106 1.7E-14 T 17-10-2018 IPR017508 HipA, N-terminal subdomain 1 VI35_14065 0511966d3d574f323c33c9f8a6ebd92f 438 Pfam PF07804 HipA-like C-terminal domain 147 390 2.7E-46 T 17-10-2018 IPR012893 HipA-like, C-terminal VI35_14065 0511966d3d574f323c33c9f8a6ebd92f 438 Pfam PF13657 HipA N-terminal domain 10 106 2.8E-14 T 17-10-2018 IPR017508 HipA, N-terminal subdomain 1 VI35_13035 25f735104a76f0213e98b44bd486ee4b 257 SUPERFAMILY SSF53850 1 254 6.53E-68 T 17-10-2018 VI35_13035 25f735104a76f0213e98b44bd486ee4b 257 Gene3D G3DSA:3.40.190.10 118 215 1.8E-70 T 17-10-2018 VI35_13035 25f735104a76f0213e98b44bd486ee4b 257 SMART SM00062 35 254 2.4E-68 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_13035 25f735104a76f0213e98b44bd486ee4b 257 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 36 252 6.2E-63 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_13035 25f735104a76f0213e98b44bd486ee4b 257 Gene3D G3DSA:3.40.190.10 34 246 1.8E-70 T 17-10-2018 VI35_12985 ae760aa07573ee2d1fe1bdcbd1788fc2 641 Gene3D G3DSA:3.30.70.270 230 398 2.8E-19 T 17-10-2018 VI35_12985 ae760aa07573ee2d1fe1bdcbd1788fc2 641 SUPERFAMILY SSF55073 243 393 7.85E-16 T 17-10-2018 IPR029787 Nucleotide cyclase VI35_12985 ae760aa07573ee2d1fe1bdcbd1788fc2 641 Pfam PF00990 Diguanylate cyclase, GGDEF domain 238 388 6.8E-11 T 17-10-2018 IPR000160 GGDEF domain VI35_12985 ae760aa07573ee2d1fe1bdcbd1788fc2 641 Pfam PF16448 LapD/MoxY periplasmic domain 24 146 2.3E-38 T 17-10-2018 IPR032244 LapD/MoxY, periplasmic domain VI35_12985 ae760aa07573ee2d1fe1bdcbd1788fc2 641 Gene3D G3DSA:3.30.1040.50 102 150 6.7E-13 T 17-10-2018 VI35_12985 ae760aa07573ee2d1fe1bdcbd1788fc2 641 SMART SM00267 226 394 3.2E-7 T 17-10-2018 IPR000160 GGDEF domain VI35_12985 ae760aa07573ee2d1fe1bdcbd1788fc2 641 SUPERFAMILY SSF141868 410 634 3.66E-40 T 17-10-2018 IPR035919 EAL domain superfamily VI35_12985 ae760aa07573ee2d1fe1bdcbd1788fc2 641 SMART SM00052 403 641 9.8E-12 T 17-10-2018 IPR001633 EAL domain VI35_12985 ae760aa07573ee2d1fe1bdcbd1788fc2 641 Gene3D G3DSA:3.20.20.450 407 639 4.5E-39 T 17-10-2018 IPR035919 EAL domain superfamily VI35_12985 ae760aa07573ee2d1fe1bdcbd1788fc2 641 Pfam PF00563 EAL domain 411 634 1.3E-40 T 17-10-2018 IPR001633 EAL domain VI35_01505 77688101fd385b73984e21ed645ce263 299 Pfam PF00892 EamA-like transporter family 147 279 1.3E-22 T 17-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VI35_01505 77688101fd385b73984e21ed645ce263 299 Pfam PF00892 EamA-like transporter family 4 138 2.7E-17 T 17-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VI35_01505 77688101fd385b73984e21ed645ce263 299 SUPERFAMILY SSF103481 36 140 1.44E-7 T 17-10-2018 VI35_01505 77688101fd385b73984e21ed645ce263 299 SUPERFAMILY SSF103481 185 281 1.1E-11 T 17-10-2018 VI35_00450 52b5a9fc4c6cd3803fb171b0ef6ab8eb 347 Gene3D G3DSA:3.40.50.2000 1 149 1.8E-22 T 17-10-2018 VI35_00450 52b5a9fc4c6cd3803fb171b0ef6ab8eb 347 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 69 304 7.2E-14 T 17-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 VI35_00450 52b5a9fc4c6cd3803fb171b0ef6ab8eb 347 SUPERFAMILY SSF53756 2 338 3.24E-63 T 17-10-2018 VI35_00450 52b5a9fc4c6cd3803fb171b0ef6ab8eb 347 Gene3D G3DSA:3.40.50.2000 166 339 4.0E-21 T 17-10-2018 VI35_17375 03f655e23128625f968fe6a019da5237 96 Gene3D G3DSA:1.10.10.10 29 96 5.0E-27 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_17375 03f655e23128625f968fe6a019da5237 96 SUPERFAMILY SSF46785 36 93 7.86E-21 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_17375 03f655e23128625f968fe6a019da5237 96 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 36 90 4.0E-24 T 17-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 VI35_17375 03f655e23128625f968fe6a019da5237 96 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 36 89 2.2E-25 T 17-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 VI35_01780 5b3e164b87d5e2cc63ad1960dd00b15e 90 SUPERFAMILY SSF52091 3 81 3.73E-12 T 17-10-2018 IPR036513 STAS domain superfamily VI35_01780 5b3e164b87d5e2cc63ad1960dd00b15e 90 Pfam PF13466 STAS domain 3 76 1.7E-15 T 17-10-2018 IPR002645 STAS domain VI35_01780 5b3e164b87d5e2cc63ad1960dd00b15e 90 Gene3D G3DSA:3.30.750.24 1 88 6.7E-11 T 17-10-2018 IPR036513 STAS domain superfamily VI35_11165 7e8ac6969c03c35a3684f0f0780f8bfa 377 Gene3D G3DSA:1.10.620.20 2 341 1.7E-143 T 17-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 VI35_11165 7e8ac6969c03c35a3684f0f0780f8bfa 377 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 115 131 - T 17-10-2018 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VI35_11165 7e8ac6969c03c35a3684f0f0780f8bfa 377 SUPERFAMILY SSF47240 3 341 2.72E-109 T 17-10-2018 IPR009078 Ferritin-like superfamily VI35_11165 7e8ac6969c03c35a3684f0f0780f8bfa 377 Pfam PF00268 Ribonucleotide reductase, small chain 32 333 2.0E-47 T 17-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VI35_06630 5a64e5bb4baf57a235b972649c7de4b7 191 SUPERFAMILY SSF69118 1 176 8.38E-44 T 17-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 VI35_06630 5a64e5bb4baf57a235b972649c7de4b7 191 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 59 108 2.5E-8 T 17-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 VI35_06630 5a64e5bb4baf57a235b972649c7de4b7 191 Gene3D G3DSA:1.20.1290.10 34 173 2.5E-36 T 17-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 VI35_06630 5a64e5bb4baf57a235b972649c7de4b7 191 Pfam PF02627 Carboxymuconolactone decarboxylase family 40 124 2.2E-13 T 17-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 VI35_08600 4df9ba8c4d2ac8c398c5db1afd67cec4 803 ProSitePatterns PS00150 Acylphosphatase signature 1. 15 25 - T 17-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 VI35_08600 4df9ba8c4d2ac8c398c5db1afd67cec4 803 Pfam PF07503 HypF finger 121 154 8.9E-16 T 17-10-2018 IPR011125 Zinc finger, HypF-type GO:0008270 VI35_08600 4df9ba8c4d2ac8c398c5db1afd67cec4 803 Pfam PF07503 HypF finger 171 203 3.7E-15 T 17-10-2018 IPR011125 Zinc finger, HypF-type GO:0008270 VI35_08600 4df9ba8c4d2ac8c398c5db1afd67cec4 803 Pfam PF01300 Telomere recombination 224 408 9.1E-52 T 17-10-2018 IPR006070 YrdC-like domain GO:0003725 VI35_08600 4df9ba8c4d2ac8c398c5db1afd67cec4 803 SUPERFAMILY SSF54975 9 92 1.31E-21 T 17-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 VI35_08600 4df9ba8c4d2ac8c398c5db1afd67cec4 803 Pfam PF00708 Acylphosphatase 12 92 1.6E-19 T 17-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 VI35_08600 4df9ba8c4d2ac8c398c5db1afd67cec4 803 PIRSF PIRSF006256 7 792 4.3E-266 T 17-10-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 VI35_08600 4df9ba8c4d2ac8c398c5db1afd67cec4 803 Gene3D G3DSA:3.90.870.50 13 387 1.0E-137 T 17-10-2018 VI35_08600 4df9ba8c4d2ac8c398c5db1afd67cec4 803 SUPERFAMILY SSF55821 188 414 9.16E-46 T 17-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily VI35_08600 4df9ba8c4d2ac8c398c5db1afd67cec4 803 Gene3D G3DSA:3.30.420.350 512 769 1.9E-115 T 17-10-2018 VI35_08600 4df9ba8c4d2ac8c398c5db1afd67cec4 803 Gene3D G3DSA:3.30.110.120 267 396 1.0E-137 T 17-10-2018 VI35_08600 4df9ba8c4d2ac8c398c5db1afd67cec4 803 Gene3D G3DSA:3.30.420.360 409 781 1.9E-115 T 17-10-2018 VI35_08600 4df9ba8c4d2ac8c398c5db1afd67cec4 803 TIGRFAM TIGR00143 hypF: carbamoyltransferase HypF 14 782 2.0E-219 T 17-10-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 VI35_02700 2ef127d87baf81ee49f0d4099512af84 290 Gene3D G3DSA:3.20.20.70 1 290 8.7E-113 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_02700 2ef127d87baf81ee49f0d4099512af84 290 SUPERFAMILY SSF51569 2 288 4.81E-101 T 17-10-2018 VI35_02700 2ef127d87baf81ee49f0d4099512af84 290 PRINTS PR00146 Dihydrodipicolinate synthase signature 127 144 5.2E-29 T 17-10-2018 IPR002220 DapA-like GO:0016829 VI35_02700 2ef127d87baf81ee49f0d4099512af84 290 PRINTS PR00146 Dihydrodipicolinate synthase signature 34 55 5.2E-29 T 17-10-2018 IPR002220 DapA-like GO:0016829 VI35_02700 2ef127d87baf81ee49f0d4099512af84 290 PRINTS PR00146 Dihydrodipicolinate synthase signature 102 118 5.2E-29 T 17-10-2018 IPR002220 DapA-like GO:0016829 VI35_02700 2ef127d87baf81ee49f0d4099512af84 290 PRINTS PR00146 Dihydrodipicolinate synthase signature 70 88 5.2E-29 T 17-10-2018 IPR002220 DapA-like GO:0016829 VI35_02700 2ef127d87baf81ee49f0d4099512af84 290 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 37 54 - T 17-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VI35_02700 2ef127d87baf81ee49f0d4099512af84 290 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 286 62.082 T 17-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VI35_02700 2ef127d87baf81ee49f0d4099512af84 290 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 132 162 - T 17-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 VI35_02700 2ef127d87baf81ee49f0d4099512af84 290 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 4 286 2.6E-94 T 17-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VI35_02700 2ef127d87baf81ee49f0d4099512af84 290 PIRSF PIRSF001365 1 290 3.5E-91 T 17-10-2018 IPR002220 DapA-like GO:0016829 VI35_02700 2ef127d87baf81ee49f0d4099512af84 290 SMART SM01130 1 288 1.1E-139 T 17-10-2018 IPR002220 DapA-like GO:0016829 VI35_02700 2ef127d87baf81ee49f0d4099512af84 290 Pfam PF00701 Dihydrodipicolinate synthetase family 2 286 2.2E-88 T 17-10-2018 IPR002220 DapA-like GO:0016829 VI35_10220 a80b78810e4c5525a75c65cc387090fc 459 PIRSF PIRSF006603 6 449 1.0E-63 T 17-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VI35_10220 a80b78810e4c5525a75c65cc387090fc 459 Pfam PF01554 MatE 17 176 5.6E-36 T 17-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VI35_10220 a80b78810e4c5525a75c65cc387090fc 459 Pfam PF01554 MatE 243 403 8.7E-37 T 17-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VI35_10220 a80b78810e4c5525a75c65cc387090fc 459 TIGRFAM TIGR00797 matE: MATE efflux family protein 17 421 2.4E-113 T 17-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VI35_11480 35ebb59bdd5a43d699a3ef4be0c60bfc 183 ProDom PD009560 CYCLASE ADENYLATE CYCLASE ADENYLYL CYAB LYASE CLASS CYAB-TYPE THERMOPHILIC MJ0240 9 137 1.0E-9 T 17-10-2018 VI35_11480 35ebb59bdd5a43d699a3ef4be0c60bfc 183 Gene3D G3DSA:2.40.320.10 1 181 1.4E-45 T 17-10-2018 VI35_11480 35ebb59bdd5a43d699a3ef4be0c60bfc 183 Pfam PF01928 CYTH domain 10 173 3.1E-25 T 17-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 VI35_11480 35ebb59bdd5a43d699a3ef4be0c60bfc 183 SMART SM01118 8 179 3.2E-19 T 17-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 VI35_11480 35ebb59bdd5a43d699a3ef4be0c60bfc 183 SUPERFAMILY SSF55154 6 176 1.8E-38 T 17-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 VI35_14200 0353ea40628f4248cfbc27117f33149e 141 Pfam PF00011 Hsp20/alpha crystallin family 40 140 2.6E-19 T 17-10-2018 IPR002068 Alpha crystallin/Hsp20 domain VI35_14200 0353ea40628f4248cfbc27117f33149e 141 SUPERFAMILY SSF49764 15 133 2.15E-32 T 17-10-2018 IPR008978 HSP20-like chaperone VI35_14200 0353ea40628f4248cfbc27117f33149e 141 Gene3D G3DSA:2.60.40.790 3 141 1.0E-30 T 17-10-2018 IPR008978 HSP20-like chaperone VI35_04160 9d1582d3331b40ceae4e0ab33f5d3d99 294 Pfam PF02563 Polysaccharide biosynthesis/export protein 118 179 1.4E-12 T 17-10-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 VI35_04160 9d1582d3331b40ceae4e0ab33f5d3d99 294 Gene3D G3DSA:3.30.1950.10 124 194 5.8E-14 T 17-10-2018 VI35_04160 9d1582d3331b40ceae4e0ab33f5d3d99 294 Gene3D G3DSA:3.10.560.10 120 256 5.8E-14 T 17-10-2018 VI35_02150 1caf9a3eb1df4c591f787ec5f0e0c47e 427 Pfam PF07196 Flagellin hook IN motif 119 173 7.0E-7 T 17-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 VI35_02150 1caf9a3eb1df4c591f787ec5f0e0c47e 427 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 3 98 1.0E-17 T 17-10-2018 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 VI35_02150 1caf9a3eb1df4c591f787ec5f0e0c47e 427 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 206 424 3.0E-45 T 17-10-2018 IPR010809 Flagellar hook-associated protein 2, C-terminal GO:0007155|GO:0009288 VI35_12415 7bad8391ea0fc8fc496bd774d26ceec4 148 Pfam PF00571 CBS domain 5 56 1.5E-13 T 17-10-2018 IPR000644 CBS domain VI35_12415 7bad8391ea0fc8fc496bd774d26ceec4 148 Pfam PF00571 CBS domain 81 130 1.1E-10 T 17-10-2018 IPR000644 CBS domain VI35_12415 7bad8391ea0fc8fc496bd774d26ceec4 148 SUPERFAMILY SSF54631 1 135 1.05E-31 T 17-10-2018 VI35_12415 7bad8391ea0fc8fc496bd774d26ceec4 148 Gene3D G3DSA:3.10.580.10 1 147 4.2E-45 T 17-10-2018 VI35_12415 7bad8391ea0fc8fc496bd774d26ceec4 148 SMART SM00116 11 59 1.0E-8 T 17-10-2018 IPR000644 CBS domain VI35_12415 7bad8391ea0fc8fc496bd774d26ceec4 148 SMART SM00116 86 133 1.8E-7 T 17-10-2018 IPR000644 CBS domain VI35_01890 6da4392ac394e6a0cde3e62af033fe47 121 Pfam PF14272 Glycine-rich SFCGS 4 117 1.1E-61 T 17-10-2018 IPR020034 Conserved hypothetical protein CHP03577, EF0830/AHA3911 VI35_01890 6da4392ac394e6a0cde3e62af033fe47 121 TIGRFAM TIGR03577 EF_0830: conserved hypothetical protein EF_0830/AHA_3911 4 118 2.9E-67 T 17-10-2018 IPR020034 Conserved hypothetical protein CHP03577, EF0830/AHA3911 VI35_06235 1c4e69c8c21e143c45fe1795fd261c8d 251 SUPERFAMILY SSF53167 4 247 4.71E-75 T 17-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 VI35_06235 1c4e69c8c21e143c45fe1795fd261c8d 251 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 64 79 - T 17-10-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 VI35_06235 1c4e69c8c21e143c45fe1795fd261c8d 251 Gene3D G3DSA:3.40.50.1580 1 251 5.9E-81 T 17-10-2018 VI35_06235 1c4e69c8c21e143c45fe1795fd261c8d 251 TIGRFAM TIGR01718 Uridine-psphlse: uridine phosphorylase 4 251 7.8E-120 T 17-10-2018 IPR010058 Uridine phosphorylase GO:0004850|GO:0005737|GO:0009166 KEGG: 00240+2.4.2.3|KEGG: 00983+2.4.2.3|MetaCyc: PWY-5532 VI35_06235 1c4e69c8c21e143c45fe1795fd261c8d 251 Pfam PF01048 Phosphorylase superfamily 19 226 3.2E-41 T 17-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 VI35_06400 713f7e8d594db9889498efed51d82914 71 Pfam PF04325 Protein of unknown function (DUF465) 19 66 2.0E-14 T 17-10-2018 IPR007420 Protein of unknown function DUF465 VI35_06400 713f7e8d594db9889498efed51d82914 71 Gene3D G3DSA:1.20.58.660 1 71 4.6E-26 T 17-10-2018 VI35_15295 d080b9be178863c9b57c7462921b0922 56 Pfam PF01679 Proteolipid membrane potential modulator 4 51 2.3E-18 T 17-10-2018 IPR000612 Proteolipid membrane potential modulator GO:0016021 VI35_00885 1d415ace6f68572287442d09010f8254 213 Pfam PF00440 Bacterial regulatory proteins, tetR family 8 54 1.7E-8 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_00885 1d415ace6f68572287442d09010f8254 213 Gene3D G3DSA:1.10.357.10 2 184 5.4E-19 T 17-10-2018 VI35_00885 1d415ace6f68572287442d09010f8254 213 SUPERFAMILY SSF46689 4 71 1.54E-13 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_20745 5aa0a8583819f91bda6a3ff8f66664cf 218 SUPERFAMILY SSF103088 101 216 1.11E-35 T 17-10-2018 IPR036737 OmpA-like domain superfamily VI35_20745 5aa0a8583819f91bda6a3ff8f66664cf 218 Pfam PF00691 OmpA family 113 208 1.5E-20 T 17-10-2018 IPR006665 OmpA-like domain VI35_20745 5aa0a8583819f91bda6a3ff8f66664cf 218 Gene3D G3DSA:3.30.1330.60 77 218 2.1E-49 T 17-10-2018 IPR036737 OmpA-like domain superfamily VI35_20745 5aa0a8583819f91bda6a3ff8f66664cf 218 Pfam PF13488 Glycine zipper 36 83 6.2E-10 T 17-10-2018 IPR039567 Glycine zipper domain VI35_20745 5aa0a8583819f91bda6a3ff8f66664cf 218 PRINTS PR01021 OMPA domain signature 144 159 2.5E-10 T 17-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VI35_20745 5aa0a8583819f91bda6a3ff8f66664cf 218 PRINTS PR01021 OMPA domain signature 114 136 2.5E-10 T 17-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VI35_20745 5aa0a8583819f91bda6a3ff8f66664cf 218 PRINTS PR01021 OMPA domain signature 159 175 2.5E-10 T 17-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VI35_16045 abeec4830be52618a8d1b025c94391de 257 Pfam PF01261 Xylose isomerase-like TIM barrel 21 219 6.3E-35 T 17-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain VI35_16045 abeec4830be52618a8d1b025c94391de 257 SUPERFAMILY SSF51658 1 255 1.96E-83 T 17-10-2018 IPR036237 Xylose isomerase-like superfamily VI35_16045 abeec4830be52618a8d1b025c94391de 257 Gene3D G3DSA:3.20.20.150 1 257 1.4E-79 T 17-10-2018 VI35_16045 abeec4830be52618a8d1b025c94391de 257 PIRSF PIRSF006241 1 257 8.7E-94 T 17-10-2018 IPR026040 Hydroxypyruvate isomerase-like VI35_10140 512684ffc9c2b3c5df44f0c44e3cf513 336 Pfam PF12833 Helix-turn-helix domain 255 332 6.7E-18 T 17-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VI35_10140 512684ffc9c2b3c5df44f0c44e3cf513 336 Gene3D G3DSA:1.10.10.60 225 335 3.5E-24 T 17-10-2018 VI35_10140 512684ffc9c2b3c5df44f0c44e3cf513 336 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 20 198 3.3E-10 T 17-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal VI35_10140 512684ffc9c2b3c5df44f0c44e3cf513 336 SUPERFAMILY SSF46689 283 332 4.48E-10 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_10140 512684ffc9c2b3c5df44f0c44e3cf513 336 SMART SM00342 248 330 2.0E-18 T 17-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VI35_14760 b92daf400a78acce18b662509d9172b8 433 SUPERFAMILY SSF52172 12 177 1.99E-6 T 17-10-2018 IPR011006 CheY-like superfamily VI35_14760 b92daf400a78acce18b662509d9172b8 433 Gene3D G3DSA:3.40.50.300 121 304 6.0E-59 T 17-10-2018 VI35_14760 b92daf400a78acce18b662509d9172b8 433 Pfam PF02954 Bacterial regulatory protein, Fis family 390 429 9.2E-6 T 17-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VI35_14760 b92daf400a78acce18b662509d9172b8 433 SMART SM00382 154 297 5.2E-9 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_14760 b92daf400a78acce18b662509d9172b8 433 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 344 353 - T 17-10-2018 IPR025944 Sigma-54 interaction domain, conserved site VI35_14760 b92daf400a78acce18b662509d9172b8 433 SUPERFAMILY SSF46689 344 432 1.82E-11 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_14760 b92daf400a78acce18b662509d9172b8 433 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 220 235 - T 17-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VI35_14760 b92daf400a78acce18b662509d9172b8 433 Gene3D G3DSA:1.10.10.60 378 433 1.2E-10 T 17-10-2018 VI35_14760 b92daf400a78acce18b662509d9172b8 433 SUPERFAMILY SSF52540 135 372 3.87E-65 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_14760 b92daf400a78acce18b662509d9172b8 433 Pfam PF00158 Sigma-54 interaction domain 135 300 2.4E-64 T 17-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VI35_14760 b92daf400a78acce18b662509d9172b8 433 Gene3D G3DSA:1.10.8.60 305 377 5.4E-19 T 17-10-2018 VI35_10085 2a57d4acab5810dc047874032d4606f4 319 Gene3D G3DSA:3.40.50.2300 129 270 6.3E-105 T 17-10-2018 VI35_10085 2a57d4acab5810dc047874032d4606f4 319 Gene3D G3DSA:3.40.50.2300 28 288 6.3E-105 T 17-10-2018 VI35_10085 2a57d4acab5810dc047874032d4606f4 319 Pfam PF13407 Periplasmic binding protein domain 31 283 9.2E-41 T 17-10-2018 IPR025997 Periplasmic binding protein VI35_10085 2a57d4acab5810dc047874032d4606f4 319 SUPERFAMILY SSF53822 24 309 9.26E-69 T 17-10-2018 IPR028082 Periplasmic binding protein-like I VI35_03970 6329918d7ce940588389fe31a4fa4017 184 SUPERFAMILY SSF55729 5 180 3.3E-41 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_03970 6329918d7ce940588389fe31a4fa4017 184 Pfam PF13302 Acetyltransferase (GNAT) domain 37 156 1.4E-15 T 17-10-2018 IPR000182 GNAT domain VI35_03970 6329918d7ce940588389fe31a4fa4017 184 Gene3D G3DSA:3.40.630.30 5 182 7.2E-41 T 17-10-2018 VI35_17790 a976079c104791577b39c29d05e32ecb 321 SUPERFAMILY SSF55073 165 317 3.14E-40 T 17-10-2018 IPR029787 Nucleotide cyclase VI35_17790 a976079c104791577b39c29d05e32ecb 321 SMART SM00267 149 319 2.5E-47 T 17-10-2018 IPR000160 GGDEF domain VI35_17790 a976079c104791577b39c29d05e32ecb 321 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 158 317 7.6E-37 T 17-10-2018 IPR000160 GGDEF domain VI35_17790 a976079c104791577b39c29d05e32ecb 321 Gene3D G3DSA:3.30.70.270 145 318 3.9E-49 T 17-10-2018 VI35_17790 a976079c104791577b39c29d05e32ecb 321 Pfam PF00990 Diguanylate cyclase, GGDEF domain 161 315 2.4E-38 T 17-10-2018 IPR000160 GGDEF domain VI35_15055 9d2906b4cfaefecab3f0cfebd7e1d3af 352 SUPERFAMILY SSF56925 22 162 5.23E-22 T 17-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VI35_15055 9d2906b4cfaefecab3f0cfebd7e1d3af 352 Gene3D G3DSA:3.30.1330.60 200 342 1.3E-47 T 17-10-2018 IPR036737 OmpA-like domain superfamily VI35_15055 9d2906b4cfaefecab3f0cfebd7e1d3af 352 Gene3D G3DSA:2.40.160.20 21 181 1.5E-23 T 17-10-2018 VI35_15055 9d2906b4cfaefecab3f0cfebd7e1d3af 352 PRINTS PR01021 OMPA domain signature 271 287 3.7E-19 T 17-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VI35_15055 9d2906b4cfaefecab3f0cfebd7e1d3af 352 PRINTS PR01021 OMPA domain signature 256 271 3.7E-19 T 17-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VI35_15055 9d2906b4cfaefecab3f0cfebd7e1d3af 352 PRINTS PR01021 OMPA domain signature 224 246 3.7E-19 T 17-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VI35_15055 9d2906b4cfaefecab3f0cfebd7e1d3af 352 PRINTS PR01022 Outer membrane protein A signature 241 260 7.8E-23 T 17-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 VI35_15055 9d2906b4cfaefecab3f0cfebd7e1d3af 352 PRINTS PR01022 Outer membrane protein A signature 280 299 7.8E-23 T 17-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 VI35_15055 9d2906b4cfaefecab3f0cfebd7e1d3af 352 PRINTS PR01022 Outer membrane protein A signature 314 327 7.8E-23 T 17-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 VI35_15055 9d2906b4cfaefecab3f0cfebd7e1d3af 352 PRINTS PR01022 Outer membrane protein A signature 212 227 7.8E-23 T 17-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 VI35_15055 9d2906b4cfaefecab3f0cfebd7e1d3af 352 PRINTS PR01022 Outer membrane protein A signature 100 116 7.8E-23 T 17-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 VI35_15055 9d2906b4cfaefecab3f0cfebd7e1d3af 352 SUPERFAMILY SSF103088 211 335 5.49E-31 T 17-10-2018 IPR036737 OmpA-like domain superfamily VI35_15055 9d2906b4cfaefecab3f0cfebd7e1d3af 352 Pfam PF01389 OmpA-like transmembrane domain 25 190 1.1E-35 T 17-10-2018 IPR000498 Outer membrane protein OmpA-like, transmembrane domain GO:0009279|GO:0016021 VI35_15055 9d2906b4cfaefecab3f0cfebd7e1d3af 352 Pfam PF00691 OmpA family 223 314 4.2E-20 T 17-10-2018 IPR006665 OmpA-like domain VI35_04920 97c0bc77d67dbea0e60f676e211a0506 117 Pfam PF02635 DsrE/DsrF-like family 4 117 3.1E-21 T 17-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein VI35_04920 97c0bc77d67dbea0e60f676e211a0506 117 Gene3D G3DSA:3.40.1260.10 2 117 5.8E-32 T 17-10-2018 IPR027396 DsrEFH-like VI35_04920 97c0bc77d67dbea0e60f676e211a0506 117 SUPERFAMILY SSF75169 4 117 3.14E-29 T 17-10-2018 IPR027396 DsrEFH-like VI35_14640 32ea9222b3dc3acfba07a9f4c92a3226 239 SUPERFAMILY SSF46894 138 233 1.76E-20 T 17-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VI35_14640 32ea9222b3dc3acfba07a9f4c92a3226 239 SUPERFAMILY SSF52172 2 123 1.42E-35 T 17-10-2018 IPR011006 CheY-like superfamily VI35_14640 32ea9222b3dc3acfba07a9f4c92a3226 239 SMART SM00448 4 114 1.4E-37 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_14640 32ea9222b3dc3acfba07a9f4c92a3226 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 159 232 3.2E-17 T 17-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VI35_14640 32ea9222b3dc3acfba07a9f4c92a3226 239 Pfam PF00072 Response regulator receiver domain 6 113 1.3E-26 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_14640 32ea9222b3dc3acfba07a9f4c92a3226 239 Gene3D G3DSA:3.40.50.2300 1 123 7.1E-33 T 17-10-2018 VI35_14640 32ea9222b3dc3acfba07a9f4c92a3226 239 SMART SM00862 156 232 1.6E-14 T 17-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VI35_14640 32ea9222b3dc3acfba07a9f4c92a3226 239 Gene3D G3DSA:1.10.10.10 124 236 3.2E-24 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_14610 548579534da54c59a9cd31dac467a3d3 235 Gene3D G3DSA:3.40.1280.10 1 159 1.7E-50 T 17-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VI35_14610 548579534da54c59a9cd31dac467a3d3 235 PIRSF PIRSF004808 1 234 2.0E-55 T 17-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 VI35_14610 548579534da54c59a9cd31dac467a3d3 235 Pfam PF00588 SpoU rRNA Methylase family 3 152 8.1E-30 T 17-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 VI35_14610 548579534da54c59a9cd31dac467a3d3 235 SUPERFAMILY SSF75217 2 155 9.16E-28 T 17-10-2018 IPR029028 Alpha/beta knot methyltransferases VI35_14610 548579534da54c59a9cd31dac467a3d3 235 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 3 227 7.2E-56 T 17-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 VI35_17050 98aa5a0e92801342caae72ac9890b07a 112 Gene3D G3DSA:3.10.450.50 2 111 1.7E-33 T 17-10-2018 VI35_17050 98aa5a0e92801342caae72ac9890b07a 112 PIRSF PIRSF030561 1 110 4.5E-32 T 17-10-2018 IPR008317 Uncharacterised conserved protein UCP030561 VI35_17050 98aa5a0e92801342caae72ac9890b07a 112 Pfam PF12680 SnoaL-like domain 7 104 1.6E-13 T 17-10-2018 IPR037401 SnoaL-like domain VI35_17050 98aa5a0e92801342caae72ac9890b07a 112 SUPERFAMILY SSF54427 2 110 1.68E-26 T 17-10-2018 IPR032710 NTF2-like domain superfamily VI35_02430 9a2fbe8f089385b09249b6d0708cfef7 160 SUPERFAMILY SSF55826 16 157 1.11E-25 T 17-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 VI35_02430 9a2fbe8f089385b09249b6d0708cfef7 160 Pfam PF04073 Aminoacyl-tRNA editing domain 34 143 9.2E-18 T 17-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 VI35_02430 9a2fbe8f089385b09249b6d0708cfef7 160 Gene3D G3DSA:3.90.960.10 15 158 9.7E-23 T 17-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 VI35_03050 d1284a7d9a122d3030be532e216c8c5e 108 Gene3D G3DSA:1.20.1290.10 4 99 3.8E-30 T 17-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 VI35_03050 d1284a7d9a122d3030be532e216c8c5e 108 SUPERFAMILY SSF69118 8 97 9.16E-27 T 17-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 VI35_03050 d1284a7d9a122d3030be532e216c8c5e 108 Pfam PF02627 Carboxymuconolactone decarboxylase family 16 97 5.1E-20 T 17-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 VI35_03800 72a6fd615ffcacc3480bb3a8380843b2 211 SUPERFAMILY SSF51735 2 206 2.82E-34 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_03800 72a6fd615ffcacc3480bb3a8380843b2 211 Pfam PF13460 NAD(P)H-binding 8 192 1.2E-35 T 17-10-2018 IPR016040 NAD(P)-binding domain VI35_03800 72a6fd615ffcacc3480bb3a8380843b2 211 Gene3D G3DSA:3.40.50.720 1 208 1.4E-38 T 17-10-2018 VI35_05130 603a58d394e95c4c3850c07ba9f39305 387 SUPERFAMILY SSF51905 4 378 2.51E-59 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_05130 603a58d394e95c4c3850c07ba9f39305 387 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 278 293 5.0E-20 T 17-10-2018 VI35_05130 603a58d394e95c4c3850c07ba9f39305 387 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 309 5.0E-20 T 17-10-2018 VI35_05130 603a58d394e95c4c3850c07ba9f39305 387 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 155 170 5.0E-20 T 17-10-2018 VI35_05130 603a58d394e95c4c3850c07ba9f39305 387 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 5.0E-20 T 17-10-2018 VI35_05130 603a58d394e95c4c3850c07ba9f39305 387 Pfam PF01494 FAD binding domain 4 335 3.9E-32 T 17-10-2018 IPR002938 FAD-binding domain GO:0071949 VI35_05130 603a58d394e95c4c3850c07ba9f39305 387 Gene3D G3DSA:3.30.9.50 80 267 1.6E-101 T 17-10-2018 VI35_05130 603a58d394e95c4c3850c07ba9f39305 387 Gene3D G3DSA:3.50.50.60 5 333 1.6E-101 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_05130 603a58d394e95c4c3850c07ba9f39305 387 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 5 385 9.7E-112 T 17-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 VI35_02800 ffca9290d2710c27000c0c918bf421a7 150 SUPERFAMILY SSF55729 5 149 5.49E-28 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_02800 ffca9290d2710c27000c0c918bf421a7 150 Pfam PF00583 Acetyltransferase (GNAT) family 38 126 2.5E-13 T 17-10-2018 IPR000182 GNAT domain VI35_02800 ffca9290d2710c27000c0c918bf421a7 150 Gene3D G3DSA:3.40.630.30 2 149 5.3E-32 T 17-10-2018 VI35_20345 b6825423534aaf7babd07863429198ee 240 Pfam PF10988 Putative auto-transporter adhesin, head GIN domain 47 223 3.2E-36 T 17-10-2018 IPR021255 Putative auto-transporter adhesin, head GIN domain VI35_20345 b6825423534aaf7babd07863429198ee 240 Gene3D G3DSA:2.160.20.120 21 238 3.5E-47 T 17-10-2018 VI35_17925 1b0f66cf1f8196f521591c818e4071d6 224 TIGRFAM TIGR02248 mutH_TIGR: DNA mismatch repair endonuclease MutH 5 220 1.9E-102 T 17-10-2018 IPR004230 DNA mismatch repair protein MutH GO:0003677|GO:0004519|GO:0006304 VI35_17925 1b0f66cf1f8196f521591c818e4071d6 224 SUPERFAMILY SSF52980 2 220 1.93E-80 T 17-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 VI35_17925 1b0f66cf1f8196f521591c818e4071d6 224 Gene3D G3DSA:3.40.600.10 1 222 1.6E-53 T 17-10-2018 IPR037057 DNA mismatch repair MutH/Restriction endonuclease, type II superfamily GO:0003677|GO:0004519 VI35_17925 1b0f66cf1f8196f521591c818e4071d6 224 Pfam PF02976 DNA mismatch repair enzyme MutH 53 151 6.8E-33 T 17-10-2018 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 VI35_17925 1b0f66cf1f8196f521591c818e4071d6 224 SMART SM00927 53 151 4.9E-63 T 17-10-2018 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 VI35_17925 1b0f66cf1f8196f521591c818e4071d6 224 Hamap MF_00759 DNA mismatch repair protein MutH [mutH]. 1 224 150.073 T 17-10-2018 IPR004230 DNA mismatch repair protein MutH GO:0003677|GO:0004519|GO:0006304 VI35_06135 f8cec094e90e09bfb4be1a54d50596d4 168 Gene3D G3DSA:3.40.630.30 1 167 3.1E-47 T 17-10-2018 VI35_06135 f8cec094e90e09bfb4be1a54d50596d4 168 Pfam PF00583 Acetyltransferase (GNAT) family 14 120 1.1E-9 T 17-10-2018 IPR000182 GNAT domain VI35_06135 f8cec094e90e09bfb4be1a54d50596d4 168 SUPERFAMILY SSF55729 1 141 6.52E-26 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_11470 4245d71deb860853907a7ae85022bbff 129 Pfam PF00583 Acetyltransferase (GNAT) family 12 102 6.9E-10 T 17-10-2018 IPR000182 GNAT domain VI35_11470 4245d71deb860853907a7ae85022bbff 129 Gene3D G3DSA:3.40.630.30 1 108 8.7E-21 T 17-10-2018 VI35_11470 4245d71deb860853907a7ae85022bbff 129 SUPERFAMILY SSF55729 7 103 1.19E-17 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_11175 343dae9d43efbf1fc4748dff66fa1883 383 Pfam PF06725 3D domain 295 371 2.9E-19 T 17-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 VI35_11175 343dae9d43efbf1fc4748dff66fa1883 383 Pfam PF03562 MltA specific insert domain 168 275 5.5E-33 T 17-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 VI35_11175 343dae9d43efbf1fc4748dff66fa1883 383 Pfam PF03562 MltA specific insert domain 132 162 3.1E-7 T 17-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 VI35_11175 343dae9d43efbf1fc4748dff66fa1883 383 PIRSF PIRSF019422 2 163 1.6E-10 T 17-10-2018 IPR026044 Membrane-bound lytic murein transglycosylase A VI35_11175 343dae9d43efbf1fc4748dff66fa1883 383 PIRSF PIRSF019422 165 380 1.1E-65 T 17-10-2018 IPR026044 Membrane-bound lytic murein transglycosylase A VI35_11175 343dae9d43efbf1fc4748dff66fa1883 383 Gene3D G3DSA:2.40.240.50 142 280 6.8E-135 T 17-10-2018 VI35_11175 343dae9d43efbf1fc4748dff66fa1883 383 Gene3D G3DSA:2.40.40.10 74 371 6.8E-135 T 17-10-2018 IPR036908 RlpA-like domain superfamily VI35_11175 343dae9d43efbf1fc4748dff66fa1883 383 SUPERFAMILY SSF50685 52 372 4.19E-104 T 17-10-2018 IPR036908 RlpA-like domain superfamily VI35_11175 343dae9d43efbf1fc4748dff66fa1883 383 SMART SM00925 142 275 1.2E-68 T 17-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 VI35_15995 a0557c3361a12b15f4683b1f3210d2db 478 Pfam PF02321 Outer membrane efflux protein 78 261 4.0E-27 T 17-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VI35_15995 a0557c3361a12b15f4683b1f3210d2db 478 Pfam PF02321 Outer membrane efflux protein 283 461 4.5E-16 T 17-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VI35_15995 a0557c3361a12b15f4683b1f3210d2db 478 Gene3D G3DSA:1.20.1600.10 76 472 1.2E-52 T 17-10-2018 VI35_15995 a0557c3361a12b15f4683b1f3210d2db 478 SUPERFAMILY SSF56954 44 464 2.35E-61 T 17-10-2018 VI35_00690 98dd6df6346323e5618304e1012a7110 254 SUPERFAMILY SSF110710 2 244 1.02E-50 T 17-10-2018 IPR028345 Aminoglycoside 3-N-acetyltransferase-like VI35_00690 98dd6df6346323e5618304e1012a7110 254 Pfam PF02522 Aminoglycoside 3-N-acetyltransferase 21 237 5.1E-40 T 17-10-2018 IPR003679 Aminoglycoside N(3)-acetyltransferase GO:0046353|GO:0046677 VI35_20355 bc03d1a55ad050e9212814c1e5279de9 323 PIRSF PIRSF026166 1 322 1.0E-128 T 17-10-2018 IPR016833 Putative sodium bile acid cotransporter VI35_20355 bc03d1a55ad050e9212814c1e5279de9 323 Gene3D G3DSA:1.20.1530.20 3 318 5.0E-33 T 17-10-2018 IPR038770 Sodium/solute symporter superfamily VI35_20355 bc03d1a55ad050e9212814c1e5279de9 323 Pfam PF13593 SBF-like CPA transporter family (DUF4137) 4 312 4.8E-104 T 17-10-2018 IPR016833 Putative sodium bile acid cotransporter VI35_13540 a8eca466592c01440dd2560f341547e7 208 SUPERFAMILY SSF53271 3 206 3.15E-66 T 17-10-2018 IPR029057 Phosphoribosyltransferase-like VI35_13540 a8eca466592c01440dd2560f341547e7 208 Gene3D G3DSA:3.40.50.2020 1 208 9.4E-72 T 17-10-2018 VI35_13540 a8eca466592c01440dd2560f341547e7 208 Pfam PF14681 Uracil phosphoribosyltransferase 7 207 1.0E-62 T 17-10-2018 VI35_13540 a8eca466592c01440dd2560f341547e7 208 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 2 208 43.722 T 17-10-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 VI35_13540 a8eca466592c01440dd2560f341547e7 208 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 2 208 4.1E-89 T 17-10-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 VI35_05830 3b0f2d512d7fb665e0f3fd425eb77277 301 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 255 2.7E-18 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_05830 3b0f2d512d7fb665e0f3fd425eb77277 301 SUPERFAMILY SSF161098 70 255 6.41E-17 T 17-10-2018 IPR035906 MetI-like superfamily VI35_05830 3b0f2d512d7fb665e0f3fd425eb77277 301 Gene3D G3DSA:1.10.3720.10 62 275 1.4E-14 T 17-10-2018 IPR035906 MetI-like superfamily VI35_05830 3b0f2d512d7fb665e0f3fd425eb77277 301 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 7 52 5.2E-7 T 17-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain VI35_09745 8052769db7c5d0865b38c4a992a732d9 172 Pfam PF13689 Domain of unknown function (DUF4154) 30 166 3.7E-34 T 17-10-2018 IPR025293 YfiR-like VI35_06635 6f8aa6e870302846c5a313fc8ee31775 236 Pfam PF07386 Protein of unknown function (DUF1499) 88 214 2.7E-24 T 17-10-2018 IPR010865 Protein of unknown function DUF1499 VI35_06845 d0325db4c245c8d1e8926060cc206e31 168 TIGRFAM TIGR02667 moaB_proteo: molybdenum cofactor biosynthesis protein B 7 168 1.2E-74 T 17-10-2018 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria GO:0006777 VI35_06845 d0325db4c245c8d1e8926060cc206e31 168 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 11 152 2.5E-31 T 17-10-2018 IPR001453 MoaB/Mog domain VI35_06845 d0325db4c245c8d1e8926060cc206e31 168 Pfam PF00994 Probable molybdopterin binding domain 14 156 6.5E-27 T 17-10-2018 IPR001453 MoaB/Mog domain VI35_06845 d0325db4c245c8d1e8926060cc206e31 168 PIRSF PIRSF006443 1 166 7.8E-56 T 17-10-2018 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 VI35_06845 d0325db4c245c8d1e8926060cc206e31 168 Gene3D G3DSA:3.40.980.10 3 168 6.7E-46 T 17-10-2018 IPR036425 MoaB/Mog-like domain superfamily VI35_06845 d0325db4c245c8d1e8926060cc206e31 168 SMART SM00852 14 158 4.1E-23 T 17-10-2018 IPR001453 MoaB/Mog domain VI35_06845 d0325db4c245c8d1e8926060cc206e31 168 SUPERFAMILY SSF53218 5 167 4.97E-41 T 17-10-2018 IPR036425 MoaB/Mog-like domain superfamily VI35_00925 b757c138c1804e6353b5c8293fed3743 188 SUPERFAMILY SSF88697 1 184 4.22E-47 T 17-10-2018 IPR015947 PUA-like superfamily VI35_00925 b757c138c1804e6353b5c8293fed3743 188 Gene3D G3DSA:2.30.130.40 1 107 2.5E-25 T 17-10-2018 VI35_00925 b757c138c1804e6353b5c8293fed3743 188 Gene3D G3DSA:1.10.4060.10 111 188 6.9E-8 T 17-10-2018 VI35_00925 b757c138c1804e6353b5c8293fed3743 188 SMART SM00464 2 186 2.3E-5 T 17-10-2018 IPR003111 Lon, substrate-binding domain VI35_00925 b757c138c1804e6353b5c8293fed3743 188 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 3 140 4.6E-15 T 17-10-2018 IPR003111 Lon, substrate-binding domain VI35_18380 e97e91184d14e8bad26319573eca55b6 211 Pfam PF06271 RDD family 60 193 1.5E-16 T 17-10-2018 IPR010432 RDD VI35_13295 e6d1425f4b2749bdf69296e10ea45cdd 465 SUPERFAMILY SSF51556 72 370 1.79E-49 T 17-10-2018 IPR032466 Metal-dependent hydrolase VI35_13295 e6d1425f4b2749bdf69296e10ea45cdd 465 Gene3D G3DSA:2.30.40.10 26 424 9.5E-96 T 17-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VI35_13295 e6d1425f4b2749bdf69296e10ea45cdd 465 Gene3D G3DSA:3.20.20.140 74 428 9.5E-96 T 17-10-2018 VI35_13295 e6d1425f4b2749bdf69296e10ea45cdd 465 SUPERFAMILY SSF51338 18 443 2.52E-25 T 17-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VI35_13295 e6d1425f4b2749bdf69296e10ea45cdd 465 Pfam PF01979 Amidohydrolase family 233 418 3.4E-21 T 17-10-2018 IPR006680 Amidohydrolase-related GO:0016787 VI35_07340 8cfd37dfc3b034f407ebe2cc94ab7e22 979 SMART SM00086 495 537 0.0075 T 17-10-2018 IPR001610 PAC motif VI35_07340 8cfd37dfc3b034f407ebe2cc94ab7e22 979 SUPERFAMILY SSF55781 123 253 1.2E-7 T 17-10-2018 VI35_07340 8cfd37dfc3b034f407ebe2cc94ab7e22 979 Pfam PF00990 Diguanylate cyclase, GGDEF domain 548 707 1.7E-34 T 17-10-2018 IPR000160 GGDEF domain VI35_07340 8cfd37dfc3b034f407ebe2cc94ab7e22 979 Gene3D G3DSA:3.20.20.450 725 976 3.2E-98 T 17-10-2018 IPR035919 EAL domain superfamily VI35_07340 8cfd37dfc3b034f407ebe2cc94ab7e22 979 Pfam PF13426 PAS domain 434 536 6.3E-13 T 17-10-2018 IPR000014 PAS domain VI35_07340 8cfd37dfc3b034f407ebe2cc94ab7e22 979 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 544 708 2.1E-27 T 17-10-2018 IPR000160 GGDEF domain VI35_07340 8cfd37dfc3b034f407ebe2cc94ab7e22 979 Gene3D G3DSA:3.30.450.20 412 546 8.2E-23 T 17-10-2018 VI35_07340 8cfd37dfc3b034f407ebe2cc94ab7e22 979 Gene3D G3DSA:3.30.450.40 112 254 4.2E-5 T 17-10-2018 IPR029016 GAF-like domain superfamily VI35_07340 8cfd37dfc3b034f407ebe2cc94ab7e22 979 SMART SM00267 537 712 2.8E-37 T 17-10-2018 IPR000160 GGDEF domain VI35_07340 8cfd37dfc3b034f407ebe2cc94ab7e22 979 SMART SM00091 423 489 3.1E-6 T 17-10-2018 IPR000014 PAS domain VI35_07340 8cfd37dfc3b034f407ebe2cc94ab7e22 979 SUPERFAMILY SSF55073 553 714 2.12E-35 T 17-10-2018 IPR029787 Nucleotide cyclase VI35_07340 8cfd37dfc3b034f407ebe2cc94ab7e22 979 Gene3D G3DSA:3.30.70.270 547 724 6.5E-47 T 17-10-2018 VI35_07340 8cfd37dfc3b034f407ebe2cc94ab7e22 979 SUPERFAMILY SSF55785 434 545 1.45E-20 T 17-10-2018 IPR035965 PAS domain superfamily VI35_07340 8cfd37dfc3b034f407ebe2cc94ab7e22 979 SMART SM00052 722 968 2.1E-105 T 17-10-2018 IPR001633 EAL domain VI35_07340 8cfd37dfc3b034f407ebe2cc94ab7e22 979 Pfam PF00563 EAL domain 728 963 5.1E-73 T 17-10-2018 IPR001633 EAL domain VI35_07340 8cfd37dfc3b034f407ebe2cc94ab7e22 979 SUPERFAMILY SSF141868 728 973 9.94E-87 T 17-10-2018 IPR035919 EAL domain superfamily VI35_07340 8cfd37dfc3b034f407ebe2cc94ab7e22 979 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 427 542 6.0E-17 T 17-10-2018 IPR000014 PAS domain VI35_07340 8cfd37dfc3b034f407ebe2cc94ab7e22 979 SUPERFAMILY SSF55781 280 423 7.63E-8 T 17-10-2018 VI35_10185 1e7fa3151a017d5ef2371a72e8fead71 292 Pfam PF02678 Pirin 20 120 7.8E-31 T 17-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 VI35_10185 1e7fa3151a017d5ef2371a72e8fead71 292 Pfam PF05726 Pirin C-terminal cupin domain 172 270 4.6E-19 T 17-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 VI35_10185 1e7fa3151a017d5ef2371a72e8fead71 292 PIRSF PIRSF006232 2 281 1.0E-75 T 17-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 VI35_10185 1e7fa3151a017d5ef2371a72e8fead71 292 SUPERFAMILY SSF51182 7 281 4.65E-72 T 17-10-2018 IPR011051 RmlC-like cupin domain superfamily VI35_10185 1e7fa3151a017d5ef2371a72e8fead71 292 Gene3D G3DSA:2.60.120.10 4 245 5.3E-62 T 17-10-2018 IPR014710 RmlC-like jelly roll fold VI35_15655 a2a4bf740f3347a2f3dc6a6bd7429525 335 Gene3D G3DSA:3.40.718.10 1 335 2.9E-146 T 17-10-2018 VI35_15655 a2a4bf740f3347a2f3dc6a6bd7429525 335 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 5 331 3.6E-111 T 17-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 VI35_15655 a2a4bf740f3347a2f3dc6a6bd7429525 335 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 227 246 - T 17-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 VI35_15655 a2a4bf740f3347a2f3dc6a6bd7429525 335 SUPERFAMILY SSF53659 3 335 2.34E-129 T 17-10-2018 VI35_15655 a2a4bf740f3347a2f3dc6a6bd7429525 335 SMART SM01329 5 331 2.0E-189 T 17-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 VI35_10355 fd52cca1403c40f821eed24bcc064002 108 SUPERFAMILY SSF51182 15 107 1.38E-34 T 17-10-2018 IPR011051 RmlC-like cupin domain superfamily VI35_10355 fd52cca1403c40f821eed24bcc064002 108 Pfam PF06865 Protein of unknown function (DUF1255) 17 106 2.2E-34 T 17-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 VI35_10355 fd52cca1403c40f821eed24bcc064002 108 Hamap MF_01537 Pyrimidine/purine nucleoside phosphorylase [ppnP]. 15 107 25.301 T 17-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 VI35_10355 fd52cca1403c40f821eed24bcc064002 108 Gene3D G3DSA:2.60.120.10 14 107 8.7E-36 T 17-10-2018 IPR014710 RmlC-like jelly roll fold VI35_08140 9c36cbd545968577f3879c5640ce90cf 111 Pfam PF12290 Protein of unknown function (DUF3802) 1 110 1.1E-44 T 17-10-2018 IPR020979 Uncharacterised protein family A0KLC6 VI35_19615 228c9c36f40574c5b2ada40018fa6a2c 325 Gene3D G3DSA:1.10.10.10 2 89 4.5E-30 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_19615 228c9c36f40574c5b2ada40018fa6a2c 325 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 69 7.9E-16 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_19615 228c9c36f40574c5b2ada40018fa6a2c 325 Pfam PF03466 LysR substrate binding domain 98 307 3.7E-21 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_19615 228c9c36f40574c5b2ada40018fa6a2c 325 Gene3D G3DSA:3.40.190.10 182 281 3.3E-56 T 17-10-2018 VI35_19615 228c9c36f40574c5b2ada40018fa6a2c 325 SUPERFAMILY SSF46785 7 88 3.61E-18 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_19615 228c9c36f40574c5b2ada40018fa6a2c 325 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 2.6E-6 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_19615 228c9c36f40574c5b2ada40018fa6a2c 325 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 2.6E-6 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_19615 228c9c36f40574c5b2ada40018fa6a2c 325 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 2.6E-6 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_19615 228c9c36f40574c5b2ada40018fa6a2c 325 SUPERFAMILY SSF53850 92 307 3.08E-40 T 17-10-2018 VI35_19615 228c9c36f40574c5b2ada40018fa6a2c 325 Gene3D G3DSA:3.40.190.10 92 305 3.3E-56 T 17-10-2018 VI35_11180 901868de44726fa0a2c005a768542527 83 Pfam PF06945 Protein of unknown function (DUF1289) 11 57 3.2E-19 T 17-10-2018 IPR010710 Protein of unknown function DUF1289 VI35_12225 0a84ed1b4f05e9e71cf3f6e73708f243 179 Gene3D G3DSA:1.20.120.1200 1 159 1.2E-44 T 17-10-2018 VI35_12225 0a84ed1b4f05e9e71cf3f6e73708f243 179 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 16 157 1.3E-30 T 17-10-2018 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_17555 e8e7aec6ca5381115c2fa988e9359ae1 237 Pfam PF03591 AzlC protein 26 166 3.6E-34 T 17-10-2018 IPR011606 Branched-chain amino acid transport, permease VI35_07845 c2b7526eee16ff6285792731a9482898 301 Pfam PF11185 Protein of unknown function (DUF2971) 108 224 9.4E-12 T 17-10-2018 IPR021352 Protein of unknown function DUF2971 VI35_04500 de0ec02122a4755b9b231c1251c48918 119 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 15 117 1.0E-29 T 17-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 VI35_04500 de0ec02122a4755b9b231c1251c48918 119 SUPERFAMILY SSF50022 15 118 1.19E-32 T 17-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 VI35_04500 de0ec02122a4755b9b231c1251c48918 119 Gene3D G3DSA:2.102.10.10 9 118 3.3E-33 T 17-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 VI35_04500 de0ec02122a4755b9b231c1251c48918 119 Pfam PF13806 Rieske-like [2Fe-2S] domain 15 117 1.1E-31 T 17-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 VI35_04400 735e3dbd07cbbf48035dcac912030243 333 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 298 6.0E-16 T 17-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VI35_04400 735e3dbd07cbbf48035dcac912030243 333 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 231 319 6.1E-27 T 17-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VI35_04400 735e3dbd07cbbf48035dcac912030243 333 Pfam PF00005 ABC transporter 31 181 9.5E-35 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_04400 735e3dbd07cbbf48035dcac912030243 333 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_04400 735e3dbd07cbbf48035dcac912030243 333 Gene3D G3DSA:3.40.50.300 1 326 4.8E-102 T 17-10-2018 VI35_04400 735e3dbd07cbbf48035dcac912030243 333 SUPERFAMILY SSF52540 38 303 1.44E-74 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_04400 735e3dbd07cbbf48035dcac912030243 333 SMART SM00382 39 231 4.0E-18 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_15250 1eb7a8a9019746ad43005dda6f898912 327 SUPERFAMILY SSF51430 2 310 2.49E-96 T 17-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily VI35_15250 1eb7a8a9019746ad43005dda6f898912 327 Pfam PF00248 Aldo/keto reductase family 15 306 4.4E-73 T 17-10-2018 IPR023210 NADP-dependent oxidoreductase domain VI35_15250 1eb7a8a9019746ad43005dda6f898912 327 Gene3D G3DSA:3.20.20.100 1 325 1.0E-113 T 17-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily VI35_10360 b91b74e85124444aeddd02dcee736b6e 414 Gene3D G3DSA:1.10.3860.10 2 414 2.8E-120 T 17-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 VI35_10360 b91b74e85124444aeddd02dcee736b6e 414 PRINTS PR00173 Glutamate-aspartate symporter signature 294 320 8.2E-52 T 17-10-2018 VI35_10360 b91b74e85124444aeddd02dcee736b6e 414 PRINTS PR00173 Glutamate-aspartate symporter signature 355 375 8.2E-52 T 17-10-2018 VI35_10360 b91b74e85124444aeddd02dcee736b6e 414 PRINTS PR00173 Glutamate-aspartate symporter signature 4 24 8.2E-52 T 17-10-2018 VI35_10360 b91b74e85124444aeddd02dcee736b6e 414 PRINTS PR00173 Glutamate-aspartate symporter signature 75 100 8.2E-52 T 17-10-2018 VI35_10360 b91b74e85124444aeddd02dcee736b6e 414 PRINTS PR00173 Glutamate-aspartate symporter signature 192 211 8.2E-52 T 17-10-2018 VI35_10360 b91b74e85124444aeddd02dcee736b6e 414 PRINTS PR00173 Glutamate-aspartate symporter signature 45 65 8.2E-52 T 17-10-2018 VI35_10360 b91b74e85124444aeddd02dcee736b6e 414 PRINTS PR00173 Glutamate-aspartate symporter signature 329 348 8.2E-52 T 17-10-2018 VI35_10360 b91b74e85124444aeddd02dcee736b6e 414 PRINTS PR00173 Glutamate-aspartate symporter signature 227 246 8.2E-52 T 17-10-2018 VI35_10360 b91b74e85124444aeddd02dcee736b6e 414 PRINTS PR00173 Glutamate-aspartate symporter signature 144 166 8.2E-52 T 17-10-2018 VI35_10360 b91b74e85124444aeddd02dcee736b6e 414 SUPERFAMILY SSF118215 12 401 1.2E-109 T 17-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 VI35_10360 b91b74e85124444aeddd02dcee736b6e 414 Pfam PF00375 Sodium:dicarboxylate symporter family 12 400 4.1E-115 T 17-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 VI35_10770 55c5f0b3800b041d0512d05e49dee8bc 193 Pfam PF02545 Maf-like protein 5 186 4.7E-44 T 17-10-2018 IPR003697 Maf-like protein GO:0047429 VI35_10770 55c5f0b3800b041d0512d05e49dee8bc 193 PIRSF PIRSF006305 1 192 8.7E-45 T 17-10-2018 IPR003697 Maf-like protein GO:0047429 VI35_10770 55c5f0b3800b041d0512d05e49dee8bc 193 SUPERFAMILY SSF52972 2 185 3.47E-56 T 17-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like VI35_10770 55c5f0b3800b041d0512d05e49dee8bc 193 TIGRFAM TIGR00172 maf: septum formation protein Maf 1 185 1.5E-53 T 17-10-2018 IPR003697 Maf-like protein GO:0047429 VI35_10770 55c5f0b3800b041d0512d05e49dee8bc 193 Hamap MF_00528 Septum formation protein Maf [maf]. 4 192 28.159 T 17-10-2018 IPR003697 Maf-like protein GO:0047429 VI35_10770 55c5f0b3800b041d0512d05e49dee8bc 193 Gene3D G3DSA:3.90.950.10 3 192 1.7E-59 T 17-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like VI35_15395 7ca84b24b5a5fcb35507f271310be43b 193 SUPERFAMILY SSF46689 3 72 5.82E-14 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_15395 7ca84b24b5a5fcb35507f271310be43b 193 SUPERFAMILY SSF48498 83 191 2.97E-16 T 17-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VI35_15395 7ca84b24b5a5fcb35507f271310be43b 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 56 2.1E-8 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_15395 7ca84b24b5a5fcb35507f271310be43b 193 Gene3D G3DSA:1.10.10.60 1 47 2.3E-19 T 17-10-2018 VI35_15395 7ca84b24b5a5fcb35507f271310be43b 193 Gene3D G3DSA:1.10.357.10 49 191 1.9E-21 T 17-10-2018 VI35_01910 024155ce69ece8154db02440f03b2ed1 126 SUPERFAMILY SSF47170 32 103 2.09E-5 T 17-10-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily VI35_01910 024155ce69ece8154db02440f03b2ed1 126 Pfam PF06295 Protein of unknown function (DUF1043) 10 123 3.7E-27 T 17-10-2018 IPR009386 Protein of unknown function DUF1043 VI35_01910 024155ce69ece8154db02440f03b2ed1 126 PIRSF PIRSF006318 1 126 1.3E-34 T 17-10-2018 IPR009386 Protein of unknown function DUF1043 VI35_09045 d5b0e305c41cbba11cc80b6ed8631759 97 Pfam PF06223 Minor tail protein T 3 91 2.1E-11 T 17-10-2018 IPR009350 Minor tail T VI35_05215 dbe269a5ecc18841666e76a3bb53fe7f 347 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 9 337 1.5E-77 T 17-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 VI35_05215 dbe269a5ecc18841666e76a3bb53fe7f 347 Gene3D G3DSA:3.20.20.70 1 345 8.9E-117 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_05215 dbe269a5ecc18841666e76a3bb53fe7f 347 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 176 188 - T 17-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 VI35_05215 dbe269a5ecc18841666e76a3bb53fe7f 347 PIRSF PIRSF000235 1 347 1.4E-193 T 17-10-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 VI35_05215 dbe269a5ecc18841666e76a3bb53fe7f 347 TIGRFAM TIGR01305 GMP_reduct_1: guanosine monophosphate reductase 2 344 5.9E-190 T 17-10-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 VI35_05215 dbe269a5ecc18841666e76a3bb53fe7f 347 SMART SM01240 7 344 1.5E-137 T 17-10-2018 VI35_05215 dbe269a5ecc18841666e76a3bb53fe7f 347 SUPERFAMILY SSF51412 6 336 2.09E-99 T 17-10-2018 VI35_05215 dbe269a5ecc18841666e76a3bb53fe7f 347 Hamap MF_00596 GMP reductase [guaC]. 1 345 50.735 T 17-10-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 VI35_00675 6f2a4576adc82f655b8f0a5d9eaabe11 177 SUPERFAMILY SSF89028 10 173 2.75E-30 T 17-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 VI35_00675 6f2a4576adc82f655b8f0a5d9eaabe11 177 Pfam PF01923 Cobalamin adenosyltransferase 30 160 1.8E-11 T 17-10-2018 IPR016030 Cobalamin adenosyltransferase-like KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 VI35_00675 6f2a4576adc82f655b8f0a5d9eaabe11 177 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 30 145 1.0E-16 T 17-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 VI35_00675 6f2a4576adc82f655b8f0a5d9eaabe11 177 Gene3D G3DSA:1.20.1200.10 27 176 6.7E-18 T 17-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 VI35_13385 0b6a72108f1553247d4534a8c516db97 339 Pfam PF13609 Gram-negative porin 7 320 3.4E-36 T 17-10-2018 VI35_13385 0b6a72108f1553247d4534a8c516db97 339 Gene3D G3DSA:2.40.160.10 21 339 5.4E-75 T 17-10-2018 IPR023614 Porin domain superfamily VI35_13385 0b6a72108f1553247d4534a8c516db97 339 SUPERFAMILY SSF56935 21 339 6.02E-58 T 17-10-2018 VI35_13385 0b6a72108f1553247d4534a8c516db97 339 PRINTS PR00183 E.coli/Salmonella-type porin signature 92 114 3.6E-7 T 17-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 VI35_13385 0b6a72108f1553247d4534a8c516db97 339 PRINTS PR00183 E.coli/Salmonella-type porin signature 230 247 3.6E-7 T 17-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 VI35_13385 0b6a72108f1553247d4534a8c516db97 339 PRINTS PR00183 E.coli/Salmonella-type porin signature 21 37 3.6E-7 T 17-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 VI35_01920 d27eec38ef463423a2cdefc784aa8e99 142 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 4 142 3.0E-65 T 17-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_01920 d27eec38ef463423a2cdefc784aa8e99 142 Gene3D G3DSA:3.90.1180.10 1 142 1.6E-63 T 17-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 VI35_01920 d27eec38ef463423a2cdefc784aa8e99 142 PIRSF PIRSF002181 1 142 6.0E-51 T 17-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 VI35_01920 d27eec38ef463423a2cdefc784aa8e99 142 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 141 28.246 T 17-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 VI35_01920 d27eec38ef463423a2cdefc784aa8e99 142 Pfam PF00572 Ribosomal protein L13 15 138 2.0E-56 T 17-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 VI35_01920 d27eec38ef463423a2cdefc784aa8e99 142 ProSitePatterns PS00783 Ribosomal protein L13 signature. 105 127 - T 17-10-2018 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 VI35_01920 d27eec38ef463423a2cdefc784aa8e99 142 SUPERFAMILY SSF52161 1 140 1.44E-59 T 17-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 VI35_19830 7be89304107cc518961f30dfb438cdee 179 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 44.597 T 17-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_19830 7be89304107cc518961f30dfb438cdee 179 Pfam PF00281 Ribosomal protein L5 25 80 2.0E-28 T 17-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19830 7be89304107cc518961f30dfb438cdee 179 Pfam PF00673 ribosomal L5P family C-terminus 84 177 5.1E-40 T 17-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19830 7be89304107cc518961f30dfb438cdee 179 Gene3D G3DSA:3.30.1440.10 1 179 8.5E-80 T 17-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19830 7be89304107cc518961f30dfb438cdee 179 PIRSF PIRSF002161 1 179 8.3E-66 T 17-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19830 7be89304107cc518961f30dfb438cdee 179 SUPERFAMILY SSF55282 4 179 3.3E-78 T 17-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19830 7be89304107cc518961f30dfb438cdee 179 ProSitePatterns PS00358 Ribosomal protein L5 signature. 57 73 - T 17-10-2018 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_04945 512669e72019516cd40944f074400f55 308 SUPERFAMILY SSF141523 93 232 8.76E-27 T 17-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like VI35_04945 512669e72019516cd40944f074400f55 308 Pfam PF03734 L,D-transpeptidase catalytic domain 99 230 1.5E-16 T 17-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 VI35_04945 512669e72019516cd40944f074400f55 308 Gene3D G3DSA:2.40.440.10 22 305 4.3E-87 T 17-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like VI35_04945 512669e72019516cd40944f074400f55 308 Pfam PF01476 LysM domain 52 87 1.8E-4 T 17-10-2018 IPR018392 LysM domain VI35_18765 ea59d50841799bff82d58fe903193276 209 SUPERFAMILY SSF55729 18 201 4.8E-37 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_18765 ea59d50841799bff82d58fe903193276 209 PRINTS PR01549 Autoinducer synthesis protein signature 95 107 2.5E-28 T 17-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 VI35_18765 ea59d50841799bff82d58fe903193276 209 PRINTS PR01549 Autoinducer synthesis protein signature 120 141 2.5E-28 T 17-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 VI35_18765 ea59d50841799bff82d58fe903193276 209 PRINTS PR01549 Autoinducer synthesis protein signature 39 61 2.5E-28 T 17-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 VI35_18765 ea59d50841799bff82d58fe903193276 209 PRINTS PR01549 Autoinducer synthesis protein signature 19 38 2.5E-28 T 17-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 VI35_18765 ea59d50841799bff82d58fe903193276 209 PRINTS PR01549 Autoinducer synthesis protein signature 62 80 2.5E-28 T 17-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 VI35_18765 ea59d50841799bff82d58fe903193276 209 PRINTS PR01549 Autoinducer synthesis protein signature 142 163 2.5E-28 T 17-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 VI35_18765 ea59d50841799bff82d58fe903193276 209 Gene3D G3DSA:3.40.630.30 9 191 9.6E-45 T 17-10-2018 VI35_18765 ea59d50841799bff82d58fe903193276 209 ProSitePatterns PS00949 Autoinducer synthase family signature. 23 48 - T 17-10-2018 IPR018311 Autoinducer synthesis, conserved site KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 VI35_18765 ea59d50841799bff82d58fe903193276 209 Pfam PF00765 Autoinducer synthase 15 168 5.6E-31 T 17-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 VI35_12480 b8eeff3c6b2fe698e29d8833720d96d9 189 SUPERFAMILY SSF101327 7 175 7.98E-37 T 17-10-2018 IPR036255 YgfB-like superfamily VI35_12480 b8eeff3c6b2fe698e29d8833720d96d9 189 Gene3D G3DSA:1.20.120.740 4 189 3.3E-51 T 17-10-2018 VI35_12480 b8eeff3c6b2fe698e29d8833720d96d9 189 Pfam PF03695 Uncharacterised protein family (UPF0149) 12 176 2.2E-34 T 17-10-2018 IPR011978 Uncharacterised protein family UPF0149 VI35_12480 b8eeff3c6b2fe698e29d8833720d96d9 189 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 17 151 5.3E-9 T 17-10-2018 IPR011978 Uncharacterised protein family UPF0149 VI35_10810 b5b11f123c91db326c0bd9bdc738b9c3 78 Pfam PF00550 Phosphopantetheine attachment site 6 73 6.5E-16 T 17-10-2018 IPR009081 Phosphopantetheine binding ACP domain VI35_10810 b5b11f123c91db326c0bd9bdc738b9c3 78 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 22.126 T 17-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 VI35_10810 b5b11f123c91db326c0bd9bdc738b9c3 78 Gene3D G3DSA:1.10.1200.10 1 75 3.3E-29 T 17-10-2018 IPR036736 ACP-like superfamily VI35_10810 b5b11f123c91db326c0bd9bdc738b9c3 78 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 1 77 1.9E-36 T 17-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 VI35_10810 b5b11f123c91db326c0bd9bdc738b9c3 78 SUPERFAMILY SSF47336 2 76 5.37E-23 T 17-10-2018 IPR036736 ACP-like superfamily VI35_10810 b5b11f123c91db326c0bd9bdc738b9c3 78 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 17-10-2018 IPR006162 Phosphopantetheine attachment site VI35_00995 ec9f281f3622dfb4ac0c3cf37a8c4ca3 577 SMART SM00304 245 299 2.1E-7 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_00995 ec9f281f3622dfb4ac0c3cf37a8c4ca3 577 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 372 542 1.1E-42 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_00995 ec9f281f3622dfb4ac0c3cf37a8c4ca3 577 SUPERFAMILY SSF58104 267 576 8.11E-74 T 17-10-2018 VI35_00995 ec9f281f3622dfb4ac0c3cf37a8c4ca3 577 Gene3D G3DSA:1.10.287.950 246 577 3.2E-71 T 17-10-2018 VI35_00995 ec9f281f3622dfb4ac0c3cf37a8c4ca3 577 SMART SM00283 314 575 2.0E-68 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_19940 c1f7272dcb6771aa5f0dd5c19dd281ff 242 Gene3D G3DSA:3.40.50.2020 110 241 3.5E-15 T 17-10-2018 VI35_19940 c1f7272dcb6771aa5f0dd5c19dd281ff 242 SUPERFAMILY SSF53271 68 237 1.01E-31 T 17-10-2018 IPR029057 Phosphoribosyltransferase-like VI35_02330 3861a0b5817172e209252dd799160295 143 Pfam PF00114 Pilin (bacterial filament) 36 132 1.7E-6 T 17-10-2018 IPR001082 Fimbrial protein pilin GO:0007155|GO:0009289 VI35_02330 3861a0b5817172e209252dd799160295 143 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 27 9.2E-10 T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_02330 3861a0b5817172e209252dd799160295 143 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 27 6.0E-11 T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_02330 3861a0b5817172e209252dd799160295 143 SUPERFAMILY SSF54523 7 119 1.31E-22 T 17-10-2018 VI35_02330 3861a0b5817172e209252dd799160295 143 Gene3D G3DSA:3.30.700.10 7 142 1.4E-29 T 17-10-2018 VI35_02330 3861a0b5817172e209252dd799160295 143 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_20095 dbe1b870f4f311c89c226cc4984f26cc 205 PIRSF PIRSF000005 1 205 3.0E-65 T 17-10-2018 IPR024167 Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 VI35_20095 dbe1b870f4f311c89c226cc4984f26cc 205 Pfam PF00034 Cytochrome c 117 203 1.7E-11 T 17-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_20095 dbe1b870f4f311c89c226cc4984f26cc 205 Pfam PF00034 Cytochrome c 25 105 9.6E-11 T 17-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_20095 dbe1b870f4f311c89c226cc4984f26cc 205 Gene3D G3DSA:1.10.760.10 21 107 1.6E-24 T 17-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VI35_20095 dbe1b870f4f311c89c226cc4984f26cc 205 Gene3D G3DSA:1.10.760.10 111 205 2.5E-28 T 17-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VI35_20095 dbe1b870f4f311c89c226cc4984f26cc 205 SUPERFAMILY SSF46626 114 203 6.6E-22 T 17-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VI35_20095 dbe1b870f4f311c89c226cc4984f26cc 205 PRINTS PR00605 Class IC cytochrome C signature 32 43 5.0E-5 T 17-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 VI35_20095 dbe1b870f4f311c89c226cc4984f26cc 205 PRINTS PR00605 Class IC cytochrome C signature 179 201 5.0E-5 T 17-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 VI35_20095 dbe1b870f4f311c89c226cc4984f26cc 205 SUPERFAMILY SSF46626 19 104 2.9E-20 T 17-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VI35_08950 e13ec1ff05c0df24efeb87e2683003e6 138 SUPERFAMILY SSF51306 13 133 2.27E-31 T 17-10-2018 IPR036286 LexA/Signal peptidase-like superfamily VI35_08950 e13ec1ff05c0df24efeb87e2683003e6 138 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 61 72 1.4E-8 T 17-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 VI35_08950 e13ec1ff05c0df24efeb87e2683003e6 138 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 89 101 1.4E-8 T 17-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 VI35_08950 e13ec1ff05c0df24efeb87e2683003e6 138 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 50 60 1.4E-8 T 17-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 VI35_08950 e13ec1ff05c0df24efeb87e2683003e6 138 Pfam PF00717 Peptidase S24-like 55 102 5.3E-10 T 17-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C VI35_08950 e13ec1ff05c0df24efeb87e2683003e6 138 Gene3D G3DSA:2.10.109.10 23 137 3.2E-45 T 17-10-2018 VI35_00155 3e2ea17d20feca7b19859dd94bbc62fe 257 Gene3D G3DSA:3.40.1280.10 7 212 9.4E-59 T 17-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VI35_00155 3e2ea17d20feca7b19859dd94bbc62fe 257 Pfam PF12105 SpoU, rRNA methylase, C-terminal 173 227 1.2E-20 T 17-10-2018 IPR022724 RNA methyltransferase, SpoU/TrmH type, C-terminal GO:0009020 VI35_00155 3e2ea17d20feca7b19859dd94bbc62fe 257 SUPERFAMILY SSF75217 13 183 5.36E-49 T 17-10-2018 IPR029028 Alpha/beta knot methyltransferases VI35_00155 3e2ea17d20feca7b19859dd94bbc62fe 257 Pfam PF00588 SpoU rRNA Methylase family 30 169 1.2E-33 T 17-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 VI35_00155 3e2ea17d20feca7b19859dd94bbc62fe 257 Hamap MF_02060 tRNA (guanosine(18)-2'-O)-methyltransferase [trmH]. 12 206 36.096 T 17-10-2018 IPR033671 tRNA (guanosine(18)-2'-O)-methyltransferase GO:0008168|GO:0030488 VI35_04045 f1b24dfc3624b3e58ddc6475d3eb402d 284 Gene3D G3DSA:3.40.50.150 1 284 6.8E-111 T 17-10-2018 VI35_04045 f1b24dfc3624b3e58ddc6475d3eb402d 284 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 33 279 3.7E-83 T 17-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 VI35_04045 f1b24dfc3624b3e58ddc6475d3eb402d 284 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 2 268 41.253 T 17-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 VI35_04045 f1b24dfc3624b3e58ddc6475d3eb402d 284 SUPERFAMILY SSF53335 9 280 5.92E-92 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_04430 059e39159df2131d15b38eda28698685 130 Pfam PF07417 Transcriptional regulator Crl 4 119 4.1E-47 T 17-10-2018 IPR009986 Sigma factor-binding protein Crl GO:0045893 VI35_04430 059e39159df2131d15b38eda28698685 130 Gene3D G3DSA:3.30.310.230 1 129 2.6E-50 T 17-10-2018 IPR038208 Sigma factor-binding protein Crl superfamily GO:0045893 VI35_04430 059e39159df2131d15b38eda28698685 130 Hamap MF_01178 Sigma factor-binding protein Crl [crl]. 1 125 30.011 T 17-10-2018 IPR009986 Sigma factor-binding protein Crl GO:0045893 VI35_11640 e8fedd978a000a1de090e258502ac829 640 Pfam PF06798 PrkA serine protein kinase C-terminal domain 379 632 1.2E-73 T 17-10-2018 IPR010650 PrkA C-terminal domain VI35_11640 e8fedd978a000a1de090e258502ac829 640 SUPERFAMILY SSF52540 75 364 1.85E-15 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_11640 e8fedd978a000a1de090e258502ac829 640 SMART SM00763 19 376 1.1E-209 T 17-10-2018 IPR013153 PrkA AAA domain VI35_11640 e8fedd978a000a1de090e258502ac829 640 PIRSF PIRSF000549 1 640 3.4E-289 T 17-10-2018 IPR016230 Serine-protein kinase, PrkA GO:0004672 VI35_11640 e8fedd978a000a1de090e258502ac829 640 Pfam PF08298 PrkA AAA domain 20 376 2.7E-173 T 17-10-2018 IPR013153 PrkA AAA domain VI35_01125 47bd80657351eebc706e3df26890ca67 274 SMART SM00849 21 194 0.0084 T 17-10-2018 IPR001279 Metallo-beta-lactamase VI35_01125 47bd80657351eebc706e3df26890ca67 274 Gene3D G3DSA:3.60.15.10 1 267 8.8E-62 T 17-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VI35_01125 47bd80657351eebc706e3df26890ca67 274 Pfam PF00753 Metallo-beta-lactamase superfamily 24 78 1.3E-6 T 17-10-2018 IPR001279 Metallo-beta-lactamase VI35_01125 47bd80657351eebc706e3df26890ca67 274 SUPERFAMILY SSF56281 15 257 6.03E-25 T 17-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VI35_09980 ac4107f8fba93cc6b38ee1465ba683ec 198 ProSitePatterns PS01114 GPR1/FUN34/yaaH family signature. 7 16 - T 17-10-2018 IPR000791 Acetate transporter GPR1/FUN34/SatP family GO:0016021 VI35_09980 ac4107f8fba93cc6b38ee1465ba683ec 198 Pfam PF01184 GPR1/FUN34/yaaH family 2 176 3.5E-39 T 17-10-2018 IPR000791 Acetate transporter GPR1/FUN34/SatP family GO:0016021 VI35_01545 78aaf65e329a2bff261e1ade4e3e9d60 348 Gene3D G3DSA:3.40.190.10 60 311 5.5E-37 T 17-10-2018 VI35_01545 78aaf65e329a2bff261e1ade4e3e9d60 348 Gene3D G3DSA:3.40.190.10 134 315 5.5E-37 T 17-10-2018 VI35_01545 78aaf65e329a2bff261e1ade4e3e9d60 348 SUPERFAMILY SSF53850 41 341 6.42E-48 T 17-10-2018 VI35_01545 78aaf65e329a2bff261e1ade4e3e9d60 348 Pfam PF13343 Bacterial extracellular solute-binding protein 84 305 3.9E-32 T 17-10-2018 VI35_13165 9d52434151b469c133de6534c67bc723 243 Gene3D G3DSA:3.40.190.10 29 239 2.2E-27 T 17-10-2018 VI35_13165 9d52434151b469c133de6534c67bc723 243 Gene3D G3DSA:3.40.190.10 107 201 2.2E-27 T 17-10-2018 VI35_13165 9d52434151b469c133de6534c67bc723 243 SUPERFAMILY SSF53850 20 241 5.02E-39 T 17-10-2018 VI35_13165 9d52434151b469c133de6534c67bc723 243 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 23 241 2.3E-25 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_13165 9d52434151b469c133de6534c67bc723 243 SMART SM00062 22 243 2.1E-7 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_05570 f5aff60ac33944f416fb0faeb0614440 197 Hamap MF_00233 Outer-membrane lipoprotein LolB [lolB]. 5 195 24.491 T 17-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 VI35_05570 f5aff60ac33944f416fb0faeb0614440 197 SUPERFAMILY SSF89392 21 195 1.26E-44 T 17-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX VI35_05570 f5aff60ac33944f416fb0faeb0614440 197 TIGRFAM TIGR00548 lolB: outer membrane lipoprotein LolB 10 194 6.9E-46 T 17-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 VI35_05570 f5aff60ac33944f416fb0faeb0614440 197 Pfam PF03550 Outer membrane lipoprotein LolB 46 193 4.1E-47 T 17-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 VI35_05570 f5aff60ac33944f416fb0faeb0614440 197 Gene3D G3DSA:2.50.20.10 25 195 1.4E-53 T 17-10-2018 VI35_11235 31b9a048a8f6cfd2ccfe3ce2987d5685 311 SUPERFAMILY SSF53335 15 297 5.93E-55 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_11235 31b9a048a8f6cfd2ccfe3ce2987d5685 311 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 15 304 5.1E-91 T 17-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 VI35_11235 31b9a048a8f6cfd2ccfe3ce2987d5685 311 PIRSF PIRSF037167 2 308 7.4E-147 T 17-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 VI35_11235 31b9a048a8f6cfd2ccfe3ce2987d5685 311 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 205 211 - T 17-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 VI35_11235 31b9a048a8f6cfd2ccfe3ce2987d5685 311 Gene3D G3DSA:3.40.50.150 104 276 2.2E-48 T 17-10-2018 VI35_11235 31b9a048a8f6cfd2ccfe3ce2987d5685 311 Hamap MF_02125 50S ribosomal protein L3 glutamine methyltransferase [prmB]. 6 301 53.379 T 17-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 VI35_11235 31b9a048a8f6cfd2ccfe3ce2987d5685 311 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 13 296 9.5E-136 T 17-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 VI35_11235 31b9a048a8f6cfd2ccfe3ce2987d5685 311 Pfam PF05175 Methyltransferase small domain 130 218 6.9E-17 T 17-10-2018 IPR007848 Methyltransferase small domain GO:0008168 VI35_11795 2c08e36546f3f313a49c5987c1bb5613 317 TIGRFAM TIGR03148 cyt_nit_nrfD: cytochrome c nitrite reductase, NrfD subunit 5 317 2.3E-137 T 17-10-2018 IPR017566 NrfD VI35_11795 2c08e36546f3f313a49c5987c1bb5613 317 Pfam PF03916 Polysulphide reductase, NrfD 5 316 4.1E-88 T 17-10-2018 IPR005614 NrfD family VI35_11795 2c08e36546f3f313a49c5987c1bb5613 317 Gene3D G3DSA:1.20.1630.10 4 221 1.0E-15 T 17-10-2018 VI35_11015 89ed4427feb773e10fe6e5389e30e8a0 302 PIRSF PIRSF004976 2 268 4.1E-73 T 17-10-2018 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type GO:0008033 Reactome: R-HSA-6782315 VI35_11015 89ed4427feb773e10fe6e5389e30e8a0 302 Pfam PF01171 PP-loop family 39 202 3.0E-15 T 17-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 VI35_11015 89ed4427feb773e10fe6e5389e30e8a0 302 Hamap MF_01850 tRNA-cytidine(32) 2-sulfurtransferase [ttcA]. 8 267 58.366 T 17-10-2018 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase GO:0008033 VI35_11015 89ed4427feb773e10fe6e5389e30e8a0 302 Gene3D G3DSA:3.40.50.620 2 259 3.9E-48 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_11015 89ed4427feb773e10fe6e5389e30e8a0 302 SUPERFAMILY SSF52402 15 233 2.67E-54 T 17-10-2018 VI35_15665 2a31b1bcfef249a85d6502b58a9850c4 364 SUPERFAMILY SSF53335 183 283 2.11E-10 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_15665 2a31b1bcfef249a85d6502b58a9850c4 364 Hamap MF_01551 Ribosomal RNA large subunit methyltransferase M [rlmM]. 1 354 82.93 T 17-10-2018 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 VI35_15665 2a31b1bcfef249a85d6502b58a9850c4 364 Gene3D G3DSA:3.30.2300.20 80 174 6.0E-34 T 17-10-2018 VI35_15665 2a31b1bcfef249a85d6502b58a9850c4 364 PIRSF PIRSF028774 1 359 2.3E-164 T 17-10-2018 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 VI35_15665 2a31b1bcfef249a85d6502b58a9850c4 364 Gene3D G3DSA:3.40.50.150 175 356 2.9E-49 T 17-10-2018 VI35_15665 2a31b1bcfef249a85d6502b58a9850c4 364 Pfam PF01728 FtsJ-like methyltransferase 185 256 1.5E-6 T 17-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 VI35_15665 2a31b1bcfef249a85d6502b58a9850c4 364 Gene3D G3DSA:3.30.70.2810 1 79 2.1E-31 T 17-10-2018 VI35_04290 b2f7bdec8899e9b9d5d1d5ae889c3613 700 SMART SM00283 437 698 1.9E-66 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_04290 b2f7bdec8899e9b9d5d1d5ae889c3613 700 SUPERFAMILY SSF58104 390 699 1.83E-74 T 17-10-2018 VI35_04290 b2f7bdec8899e9b9d5d1d5ae889c3613 700 SMART SM00304 368 422 1.9E-14 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_04290 b2f7bdec8899e9b9d5d1d5ae889c3613 700 Gene3D G3DSA:1.10.287.950 367 700 1.0E-73 T 17-10-2018 VI35_04290 b2f7bdec8899e9b9d5d1d5ae889c3613 700 Pfam PF00672 HAMP domain 368 419 1.3E-11 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_04290 b2f7bdec8899e9b9d5d1d5ae889c3613 700 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 481 664 3.4E-44 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_04290 b2f7bdec8899e9b9d5d1d5ae889c3613 700 Gene3D G3DSA:3.30.450.20 73 230 1.2E-36 T 17-10-2018 VI35_04290 b2f7bdec8899e9b9d5d1d5ae889c3613 700 Gene3D G3DSA:3.30.450.20 66 327 1.2E-36 T 17-10-2018 VI35_04750 3dcfe091f4ae34150ecde3f0da4d3372 217 Gene3D G3DSA:2.40.30.20 102 205 4.0E-34 T 17-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VI35_04750 3dcfe091f4ae34150ecde3f0da4d3372 217 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 200 1.6E-62 T 17-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VI35_04750 3dcfe091f4ae34150ecde3f0da4d3372 217 SUPERFAMILY SSF63380 93 197 8.5E-33 T 17-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VI35_04750 3dcfe091f4ae34150ecde3f0da4d3372 217 SUPERFAMILY SSF63380 1 89 3.57E-24 T 17-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VI35_04750 3dcfe091f4ae34150ecde3f0da4d3372 217 Gene3D G3DSA:2.40.30.20 1 89 1.7E-26 T 17-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VI35_04750 3dcfe091f4ae34150ecde3f0da4d3372 217 Pfam PF00677 Lumazine binding domain 100 184 7.3E-25 T 17-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VI35_04750 3dcfe091f4ae34150ecde3f0da4d3372 217 Pfam PF00677 Lumazine binding domain 3 87 3.8E-21 T 17-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VI35_04750 3dcfe091f4ae34150ecde3f0da4d3372 217 PIRSF PIRSF000498 1 211 1.9E-75 T 17-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VI35_21235 726011b7465c96c3eccbf7fcc0972952 222 SUPERFAMILY SSF161098 14 204 1.83E-44 T 17-10-2018 IPR035906 MetI-like superfamily VI35_21235 726011b7465c96c3eccbf7fcc0972952 222 Gene3D G3DSA:1.10.3720.10 2 221 9.9E-53 T 17-10-2018 IPR035906 MetI-like superfamily VI35_21235 726011b7465c96c3eccbf7fcc0972952 222 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 113 3.5E-26 T 17-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 VI35_21235 726011b7465c96c3eccbf7fcc0972952 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 219 8.2E-17 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_07370 8e1817059a1111533a5dff308bb46104 364 Pfam PF01594 AI-2E family transporter 26 354 7.4E-17 T 17-10-2018 IPR002549 Transmembrane protein TqsA-like VI35_13840 68c72487b7c18c4b02dfc7847d2752ef 419 Pfam PF01943 Polysaccharide biosynthesis protein 7 280 7.8E-22 T 17-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 VI35_20135 f5ff960c897f49d16bc86bd51fe3119c 362 SMART SM00257 33 81 2.1E-4 T 17-10-2018 IPR018392 LysM domain VI35_20135 f5ff960c897f49d16bc86bd51fe3119c 362 Pfam PF01476 LysM domain 34 80 4.6E-14 T 17-10-2018 IPR018392 LysM domain VI35_20135 f5ff960c897f49d16bc86bd51fe3119c 362 SUPERFAMILY SSF54106 33 80 1.14E-7 T 17-10-2018 VI35_20135 f5ff960c897f49d16bc86bd51fe3119c 362 Gene3D G3DSA:3.10.350.10 32 79 5.2E-14 T 17-10-2018 IPR036779 LysM domain superfamily VI35_11845 0021d7a0826845354f10ce344d0fecd1 373 SMART SM00116 309 356 2.6E-6 T 17-10-2018 IPR000644 CBS domain VI35_11845 0021d7a0826845354f10ce344d0fecd1 373 SMART SM00116 239 287 6.8E-4 T 17-10-2018 IPR000644 CBS domain VI35_11845 0021d7a0826845354f10ce344d0fecd1 373 SUPERFAMILY SSF54631 225 355 8.62E-31 T 17-10-2018 VI35_11845 0021d7a0826845354f10ce344d0fecd1 373 Pfam PF00571 CBS domain 234 283 1.5E-10 T 17-10-2018 IPR000644 CBS domain VI35_11845 0021d7a0826845354f10ce344d0fecd1 373 Pfam PF00571 CBS domain 302 355 2.3E-10 T 17-10-2018 IPR000644 CBS domain VI35_11845 0021d7a0826845354f10ce344d0fecd1 373 Gene3D G3DSA:3.10.580.10 214 357 4.5E-33 T 17-10-2018 VI35_11845 0021d7a0826845354f10ce344d0fecd1 373 Pfam PF04982 HPP family 47 167 9.8E-38 T 17-10-2018 IPR007065 HPP VI35_21010 fad1e1b88507bb39e90c23291c1d7fae 421 SUPERFAMILY SSF51338 2 72 1.15E-5 T 17-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VI35_21010 fad1e1b88507bb39e90c23291c1d7fae 421 Gene3D G3DSA:3.20.20.140 51 358 6.9E-178 T 17-10-2018 VI35_21010 fad1e1b88507bb39e90c23291c1d7fae 421 Pfam PF07969 Amidohydrolase family 41 399 1.3E-52 T 17-10-2018 IPR013108 Amidohydrolase 3 VI35_21010 fad1e1b88507bb39e90c23291c1d7fae 421 SUPERFAMILY SSF51556 50 370 1.1E-107 T 17-10-2018 IPR032466 Metal-dependent hydrolase VI35_21010 fad1e1b88507bb39e90c23291c1d7fae 421 Gene3D G3DSA:2.30.40.10 5 405 6.9E-178 T 17-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VI35_11720 fc79370201b5399e58ed34047a036cdf 221 Gene3D G3DSA:3.40.50.2300 1 138 1.1E-28 T 17-10-2018 VI35_11720 fc79370201b5399e58ed34047a036cdf 221 SUPERFAMILY SSF52172 2 127 5.27E-33 T 17-10-2018 IPR011006 CheY-like superfamily VI35_11720 fc79370201b5399e58ed34047a036cdf 221 Pfam PF12431 Transcriptional regulator 131 159 6.6E-8 T 17-10-2018 IPR028141 Transcriptional regulator VI35_11720 fc79370201b5399e58ed34047a036cdf 221 Pfam PF00072 Response regulator receiver domain 4 115 1.5E-23 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_11720 fc79370201b5399e58ed34047a036cdf 221 PIRSF PIRSF006171 1 221 5.6E-75 T 17-10-2018 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0000160|GO:0003700 VI35_11720 fc79370201b5399e58ed34047a036cdf 221 SMART SM00448 2 115 5.0E-27 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_07595 b3539d94786180f172bd15bc596b087e 85 TIGRFAM TIGR02183 GRXA: glutaredoxin, GrxA family 2 84 1.2E-43 T 17-10-2018 IPR011902 Glutaredoxin, GrxA GO:0009055|GO:0015035|GO:0045454 VI35_07595 b3539d94786180f172bd15bc596b087e 85 PRINTS PR00160 Glutaredoxin signature 3 21 1.4E-11 T 17-10-2018 IPR014025 Glutaredoxin subgroup VI35_07595 b3539d94786180f172bd15bc596b087e 85 PRINTS PR00160 Glutaredoxin signature 66 79 1.4E-11 T 17-10-2018 IPR014025 Glutaredoxin subgroup VI35_07595 b3539d94786180f172bd15bc596b087e 85 PRINTS PR00160 Glutaredoxin signature 52 65 1.4E-11 T 17-10-2018 IPR014025 Glutaredoxin subgroup VI35_07595 b3539d94786180f172bd15bc596b087e 85 SUPERFAMILY SSF52833 3 81 3.25E-20 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_07595 b3539d94786180f172bd15bc596b087e 85 Pfam PF00462 Glutaredoxin 3 69 5.6E-15 T 17-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 VI35_07595 b3539d94786180f172bd15bc596b087e 85 ProSitePatterns PS00195 Glutaredoxin active site. 5 20 - T 17-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 VI35_07595 b3539d94786180f172bd15bc596b087e 85 Gene3D G3DSA:3.40.30.10 2 84 2.5E-23 T 17-10-2018 VI35_04660 9435dd8463eda397e28eca890a5bfa63 292 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 3 284 2.6E-100 T 17-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 VI35_04660 9435dd8463eda397e28eca890a5bfa63 292 SUPERFAMILY SSF53335 54 273 7.54E-44 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_04660 9435dd8463eda397e28eca890a5bfa63 292 Gene3D G3DSA:3.40.50.150 99 291 7.3E-58 T 17-10-2018 VI35_04660 9435dd8463eda397e28eca890a5bfa63 292 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 3 290 5.6E-97 T 17-10-2018 VI35_04660 9435dd8463eda397e28eca890a5bfa63 292 PIRSF PIRSF000401 1 292 1.9E-92 T 17-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 VI35_04660 9435dd8463eda397e28eca890a5bfa63 292 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 3 290 32.337 T 17-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 VI35_16125 8160e48d5776f587598590acfa14b212 109 SUPERFAMILY SSF51182 23 92 4.55E-9 T 17-10-2018 IPR011051 RmlC-like cupin domain superfamily VI35_16125 8160e48d5776f587598590acfa14b212 109 Gene3D G3DSA:2.60.120.10 8 108 1.4E-5 T 17-10-2018 IPR014710 RmlC-like jelly roll fold VI35_02050 c38108d50fe994dc7c43a9650dc74720 138 Pfam PF02050 Flagellar FliJ protein 17 130 1.4E-10 T 17-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 VI35_00115 c2ee15448ef3b620a1d0a95c4ef5fd18 196 ProSitePatterns PS01081 TetR-type HTH domain signature. 19 50 - T 17-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site VI35_00115 c2ee15448ef3b620a1d0a95c4ef5fd18 196 SUPERFAMILY SSF46689 3 60 5.34E-15 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_00115 c2ee15448ef3b620a1d0a95c4ef5fd18 196 Gene3D G3DSA:1.10.357.10 1 185 4.6E-48 T 17-10-2018 VI35_00115 c2ee15448ef3b620a1d0a95c4ef5fd18 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 52 4.0E-14 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_00115 c2ee15448ef3b620a1d0a95c4ef5fd18 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 1.8E-9 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_00115 c2ee15448ef3b620a1d0a95c4ef5fd18 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 1.8E-9 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_07690 26b2fc249b11562170ef4e54870926c0 148 Pfam PF04191 Phospholipid methyltransferase 34 136 1.3E-11 T 17-10-2018 IPR007318 Phospholipid methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-1483191 VI35_07690 26b2fc249b11562170ef4e54870926c0 148 ProDom PD049902 METHYLTRANSFERASE TRANSFERASE PRECURSOR ISOPRENYLCYSTEINE SIGNAL CARBOXYL TRANSMEMBRANE MEMBRANE FAMILY XCC3183 119 147 5.0E-4 T 17-10-2018 VI35_07690 26b2fc249b11562170ef4e54870926c0 148 Gene3D G3DSA:1.20.120.1630 4 148 3.5E-24 T 17-10-2018 VI35_03170 b7dbe7365241a4f4d1091752fd5b26f4 250 SUPERFAMILY SSF81324 11 210 5.23E-36 T 17-10-2018 VI35_03170 b7dbe7365241a4f4d1091752fd5b26f4 250 Pfam PF07885 Ion channel 132 209 1.9E-16 T 17-10-2018 IPR013099 Potassium channel domain VI35_03170 b7dbe7365241a4f4d1091752fd5b26f4 250 Gene3D G3DSA:1.10.287.70 123 173 7.8E-13 T 17-10-2018 VI35_03170 b7dbe7365241a4f4d1091752fd5b26f4 250 Gene3D G3DSA:1.20.5.110 175 215 2.0E-9 T 17-10-2018 VI35_03170 b7dbe7365241a4f4d1091752fd5b26f4 250 PRINTS PR00169 Potassium channel signature 154 176 1.0E-7 T 17-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 VI35_03170 b7dbe7365241a4f4d1091752fd5b26f4 250 PRINTS PR00169 Potassium channel signature 183 209 1.0E-7 T 17-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 VI35_03170 b7dbe7365241a4f4d1091752fd5b26f4 250 PRINTS PR00169 Potassium channel signature 95 121 1.0E-7 T 17-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 VI35_03170 b7dbe7365241a4f4d1091752fd5b26f4 250 Gene3D G3DSA:1.20.120.350 5 122 7.3E-15 T 17-10-2018 IPR027359 Voltage-dependent channel domain superfamily VI35_05365 16d423a034e1921a16634f14f84dedf1 189 Pfam PF05137 Fimbrial assembly protein (PilN) 100 177 5.9E-15 T 17-10-2018 IPR007813 Fimbrial assembly PilN VI35_07590 10bf2413faa65a4b9481b0f30cba0b04 69 Pfam PF07866 Protein of unknown function (DUF1653) 8 66 4.2E-23 T 17-10-2018 IPR023387 DUF1653-like domain VI35_07590 10bf2413faa65a4b9481b0f30cba0b04 69 Gene3D G3DSA:2.30.30.320 1 69 4.6E-20 T 17-10-2018 IPR037135 DUF1653-like domain superfamily VI35_01335 c49186831bcf15462d7d8eac378a3d18 130 SUPERFAMILY SSF75169 1 130 7.65E-36 T 17-10-2018 IPR027396 DsrEFH-like VI35_01335 c49186831bcf15462d7d8eac378a3d18 130 TIGRFAM TIGR03012 sulf_tusD_dsrE: sulfur relay protein TusD/DsrE 4 130 2.8E-49 T 17-10-2018 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 VI35_01335 c49186831bcf15462d7d8eac378a3d18 130 Gene3D G3DSA:3.40.1260.10 1 130 5.6E-49 T 17-10-2018 IPR027396 DsrEFH-like VI35_01335 c49186831bcf15462d7d8eac378a3d18 130 Pfam PF02635 DsrE/DsrF-like family 5 130 6.6E-26 T 17-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein VI35_06220 d958f4dee982ca15421ed847b9f4c640 211 Gene3D G3DSA:3.40.50.720 1 211 9.9E-50 T 17-10-2018 VI35_06220 d958f4dee982ca15421ed847b9f4c640 211 Pfam PF01370 NAD dependent epimerase/dehydratase family 5 111 5.3E-6 T 17-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 VI35_06220 d958f4dee982ca15421ed847b9f4c640 211 SUPERFAMILY SSF51735 2 198 1.07E-35 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_06290 4cddd3f2ae5ad416353a2714c422e9f1 228 SUPERFAMILY SSF55166 17 180 1.53E-18 T 17-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 VI35_06290 4cddd3f2ae5ad416353a2714c422e9f1 228 Pfam PF02557 D-alanyl-D-alanine carboxypeptidase 22 180 8.2E-37 T 17-10-2018 IPR003709 Peptidase M15B GO:0006508|GO:0008233 VI35_06290 4cddd3f2ae5ad416353a2714c422e9f1 228 Gene3D G3DSA:3.30.1380.10 5 198 2.5E-35 T 17-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 VI35_19030 badf0bb170c5859ca2d38d5f6a1be73a 171 PIRSF PIRSF030780 1 166 2.0E-57 T 17-10-2018 IPR016956 Inner membrane protein YdjM VI35_19030 badf0bb170c5859ca2d38d5f6a1be73a 171 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 1 156 1.7E-32 T 17-10-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase VI35_12875 209b38181691763fdb0559714a19accb 56 Gene3D G3DSA:1.10.238.160 2 54 1.0E-9 T 17-10-2018 VI35_12875 209b38181691763fdb0559714a19accb 56 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 2 48 1.9E-20 T 17-10-2018 IPR010260 DNA-binding transcriptional activator AlpA VI35_15185 39f0004c21e66a9ac2ec026bbf87772a 300 ProSitePatterns PS01125 ROK family signature. 130 157 - T 17-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 VI35_15185 39f0004c21e66a9ac2ec026bbf87772a 300 Gene3D G3DSA:3.30.420.40 119 289 6.9E-85 T 17-10-2018 VI35_15185 39f0004c21e66a9ac2ec026bbf87772a 300 Gene3D G3DSA:3.30.420.40 4 296 6.9E-85 T 17-10-2018 VI35_15185 39f0004c21e66a9ac2ec026bbf87772a 300 Pfam PF00480 ROK family 2 298 5.4E-63 T 17-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 VI35_15185 39f0004c21e66a9ac2ec026bbf87772a 300 SUPERFAMILY SSF53067 1 298 8.5E-55 T 17-10-2018 VI35_08235 736bd21bb0757826b1c946baa04c12ee 562 Pfam PF10131 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein 78 393 1.1E-6 T 17-10-2018 IPR018776 Membrane protein, 6-pyruvoyl-tetrahydropterin synthase-related domain VI35_16845 5b5e87ada8f32b71746a96a18c142ced 715 Pfam PF02867 Ribonucleotide reductase, barrel domain 101 651 1.0E-137 T 17-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VI35_16845 5b5e87ada8f32b71746a96a18c142ced 715 SUPERFAMILY SSF51998 10 691 3.36E-169 T 17-10-2018 VI35_16845 5b5e87ada8f32b71746a96a18c142ced 715 Gene3D G3DSA:3.20.70.20 7 666 5.3E-158 T 17-10-2018 VI35_16845 5b5e87ada8f32b71746a96a18c142ced 715 TIGRFAM TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 24 659 2.3E-171 T 17-10-2018 IPR013344 Ribonucleotide reductase, adenosylcobalamin-dependent GO:0000166|GO:0004748|GO:0031419|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 VI35_16845 5b5e87ada8f32b71746a96a18c142ced 715 PRINTS PR01183 Ribonucleotide reductase large chain signature 176 195 1.4E-15 T 17-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VI35_16845 5b5e87ada8f32b71746a96a18c142ced 715 PRINTS PR01183 Ribonucleotide reductase large chain signature 511 538 1.4E-15 T 17-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VI35_16845 5b5e87ada8f32b71746a96a18c142ced 715 PRINTS PR01183 Ribonucleotide reductase large chain signature 393 415 1.4E-15 T 17-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VI35_16845 5b5e87ada8f32b71746a96a18c142ced 715 PRINTS PR01183 Ribonucleotide reductase large chain signature 355 378 1.4E-15 T 17-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VI35_16845 5b5e87ada8f32b71746a96a18c142ced 715 PRINTS PR01183 Ribonucleotide reductase large chain signature 317 328 1.4E-15 T 17-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VI35_07285 8ffc8ed4732121ddc8f5fa9096bfb418 203 PIRSF PIRSF011489 1 196 1.0E-58 T 17-10-2018 IPR007431 Acyl carrier protein phosphodiesterase GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 VI35_07285 8ffc8ed4732121ddc8f5fa9096bfb418 203 Pfam PF04336 Acyl carrier protein phosphodiesterase 81 185 1.3E-28 T 17-10-2018 IPR007431 Acyl carrier protein phosphodiesterase GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 VI35_11955 f09acbfca450ca0f3878d6fe01c55d6c 502 Gene3D G3DSA:3.30.1360.60 2 79 5.3E-25 T 17-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VI35_11955 f09acbfca450ca0f3878d6fe01c55d6c 502 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 21 38 - T 17-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VI35_11955 f09acbfca450ca0f3878d6fe01c55d6c 502 Pfam PF00367 phosphotransferase system, EIIB 10 43 1.5E-13 T 17-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VI35_11955 f09acbfca450ca0f3878d6fe01c55d6c 502 SUPERFAMILY SSF55604 8 82 6.41E-21 T 17-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VI35_11955 f09acbfca450ca0f3878d6fe01c55d6c 502 Pfam PF02378 Phosphotransferase system, EIIC 107 425 2.4E-29 T 17-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 VI35_03495 495a5d4d031df01a272453805a1de9ce 349 SUPERFAMILY SSF51735 2 156 9.53E-48 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_03495 495a5d4d031df01a272453805a1de9ce 349 Gene3D G3DSA:3.30.360.10 126 326 3.3E-130 T 17-10-2018 VI35_03495 495a5d4d031df01a272453805a1de9ce 349 SUPERFAMILY SSF55347 129 278 2.83E-24 T 17-10-2018 VI35_03495 495a5d4d031df01a272453805a1de9ce 349 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 133 228 5.0E-12 T 17-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 VI35_03495 495a5d4d031df01a272453805a1de9ce 349 Gene3D G3DSA:3.40.50.720 5 315 3.3E-130 T 17-10-2018 VI35_03495 495a5d4d031df01a272453805a1de9ce 349 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 119 1.2E-22 T 17-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 VI35_02830 ebb207d9e3e3e4c133c2cf795d244c86 308 Gene3D G3DSA:2.30.30.830 124 191 2.5E-27 T 17-10-2018 VI35_02830 ebb207d9e3e3e4c133c2cf795d244c86 308 Pfam PF11356 Type II secretion system protein C 48 190 4.5E-41 T 17-10-2018 IPR024961 Type II secretion system protein C, N-terminal VI35_02830 ebb207d9e3e3e4c133c2cf795d244c86 308 SUPERFAMILY SSF50156 211 304 1.05E-15 T 17-10-2018 IPR036034 PDZ superfamily GO:0005515 VI35_02830 ebb207d9e3e3e4c133c2cf795d244c86 308 TIGRFAM TIGR01713 typeII_sec_gspC: type II secretion system protein C 46 305 1.6E-68 T 17-10-2018 IPR001639 Type II secretion system protein C GO:0008565|GO:0015627|GO:0015628 VI35_02830 ebb207d9e3e3e4c133c2cf795d244c86 308 Gene3D G3DSA:2.30.42.10 203 305 1.7E-22 T 17-10-2018 VI35_02830 ebb207d9e3e3e4c133c2cf795d244c86 308 ProSitePatterns PS01141 Bacterial type II secretion system protein C signature. 244 270 - T 17-10-2018 IPR001639 Type II secretion system protein C GO:0008565|GO:0015627|GO:0015628 VI35_02830 ebb207d9e3e3e4c133c2cf795d244c86 308 PRINTS PR00810 Bacterial general secretion pathway protein C signature 127 136 5.4E-6 T 17-10-2018 IPR001639 Type II secretion system protein C GO:0008565|GO:0015627|GO:0015628 VI35_02830 ebb207d9e3e3e4c133c2cf795d244c86 308 PRINTS PR00810 Bacterial general secretion pathway protein C signature 260 270 5.4E-6 T 17-10-2018 IPR001639 Type II secretion system protein C GO:0008565|GO:0015627|GO:0015628 VI35_03160 85d1618f27511fa6334c6a6e08b20974 146 Gene3D G3DSA:3.40.630.30 5 136 2.0E-40 T 17-10-2018 VI35_03160 85d1618f27511fa6334c6a6e08b20974 146 Pfam PF13508 Acetyltransferase (GNAT) domain 48 127 3.4E-10 T 17-10-2018 IPR000182 GNAT domain VI35_03160 85d1618f27511fa6334c6a6e08b20974 146 SUPERFAMILY SSF55729 18 127 9.12E-23 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_14125 0d0516a48c708d29d1828ae6fefcbfcb 297 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 4 283 4.5E-90 T 17-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 VI35_14125 0d0516a48c708d29d1828ae6fefcbfcb 297 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 2 285 17.996 T 17-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 VI35_14125 0d0516a48c708d29d1828ae6fefcbfcb 297 Pfam PF01040 UbiA prenyltransferase family 19 270 5.3E-58 T 17-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 VI35_14125 0d0516a48c708d29d1828ae6fefcbfcb 297 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 57 79 - T 17-10-2018 IPR030470 UbiA prenyltransferase conserved site VI35_14125 0d0516a48c708d29d1828ae6fefcbfcb 297 Gene3D G3DSA:1.10.357.140 14 175 2.6E-19 T 17-10-2018 VI35_06090 49942f8601da7a7c97193fbfee436f24 403 Gene3D G3DSA:3.40.50.150 122 401 7.2E-79 T 17-10-2018 VI35_06090 49942f8601da7a7c97193fbfee436f24 403 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 384 401 1.9E-27 T 17-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VI35_06090 49942f8601da7a7c97193fbfee436f24 403 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 347 363 1.9E-27 T 17-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VI35_06090 49942f8601da7a7c97193fbfee436f24 403 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 297 309 1.9E-27 T 17-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VI35_06090 49942f8601da7a7c97193fbfee436f24 403 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 201 215 1.9E-27 T 17-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VI35_06090 49942f8601da7a7c97193fbfee436f24 403 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 230 240 1.9E-27 T 17-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VI35_06090 49942f8601da7a7c97193fbfee436f24 403 SUPERFAMILY SSF53335 117 402 1.62E-68 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_06090 49942f8601da7a7c97193fbfee436f24 403 Pfam PF01189 16S rRNA methyltransferase RsmB/F 219 381 5.4E-45 T 17-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 VI35_08875 35080b0a96a957174ac18766eed60a65 216 Gene3D G3DSA:1.10.260.40 1 65 9.8E-22 T 17-10-2018 VI35_08875 35080b0a96a957174ac18766eed60a65 216 Pfam PF00717 Peptidase S24-like 126 180 5.0E-12 T 17-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C VI35_08875 35080b0a96a957174ac18766eed60a65 216 Pfam PF12844 Helix-turn-helix domain 4 66 1.7E-12 T 17-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VI35_08875 35080b0a96a957174ac18766eed60a65 216 SUPERFAMILY SSF47413 1 67 2.45E-17 T 17-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VI35_08875 35080b0a96a957174ac18766eed60a65 216 SMART SM00530 6 61 1.3E-13 T 17-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VI35_08875 35080b0a96a957174ac18766eed60a65 216 SUPERFAMILY SSF51306 81 209 1.83E-21 T 17-10-2018 IPR036286 LexA/Signal peptidase-like superfamily VI35_08875 35080b0a96a957174ac18766eed60a65 216 Gene3D G3DSA:2.10.109.10 79 214 4.0E-39 T 17-10-2018 VI35_04510 fb606aa2f59ca6917b5eaf5ffa826197 302 Pfam PF04227 Indigoidine synthase A like protein 11 300 6.4E-136 T 17-10-2018 IPR007342 Pseudouridine-5'-phosphate glycosidase GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 VI35_04510 fb606aa2f59ca6917b5eaf5ffa826197 302 SUPERFAMILY SSF110581 4 301 2.35E-117 T 17-10-2018 IPR022830 Indigoidine synthase A-like GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 VI35_04510 fb606aa2f59ca6917b5eaf5ffa826197 302 Gene3D G3DSA:3.40.1790.10 2 302 5.9E-141 T 17-10-2018 IPR022830 Indigoidine synthase A-like GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 VI35_04510 fb606aa2f59ca6917b5eaf5ffa826197 302 Hamap MF_01876 Pseudouridine-5'-phosphate glycosidase [psuG]. 10 302 43.723 T 17-10-2018 IPR007342 Pseudouridine-5'-phosphate glycosidase GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 VI35_08210 6c35cd852e1296c3302900ef8fdd7257 226 SMART SM00382 30 224 1.2E-13 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_08210 6c35cd852e1296c3302900ef8fdd7257 226 Pfam PF00005 ABC transporter 23 167 1.4E-34 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_08210 6c35cd852e1296c3302900ef8fdd7257 226 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_08210 6c35cd852e1296c3302900ef8fdd7257 226 SUPERFAMILY SSF52540 1 221 4.21E-61 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_08210 6c35cd852e1296c3302900ef8fdd7257 226 Gene3D G3DSA:3.40.50.300 1 225 1.2E-66 T 17-10-2018 VI35_16040 7a1d5fad670c726f4ca46bd26f7b0086 210 SUPERFAMILY SSF53639 1 208 7.06E-59 T 17-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily VI35_16040 7a1d5fad670c726f4ca46bd26f7b0086 210 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 10 186 1.4E-41 T 17-10-2018 IPR001303 Class II aldolase/adducin N-terminal VI35_16040 7a1d5fad670c726f4ca46bd26f7b0086 210 SMART SM01007 8 187 6.3E-57 T 17-10-2018 IPR001303 Class II aldolase/adducin N-terminal VI35_16040 7a1d5fad670c726f4ca46bd26f7b0086 210 Gene3D G3DSA:3.40.225.10 2 209 9.3E-58 T 17-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily VI35_01555 38768b3f1aee71f58fc122f0c57b7569 254 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 15 74 3.8E-9 T 17-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VI35_01555 38768b3f1aee71f58fc122f0c57b7569 254 SMART SM00530 14 68 0.0044 T 17-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VI35_01555 38768b3f1aee71f58fc122f0c57b7569 254 SUPERFAMILY SSF47413 9 70 2.94E-9 T 17-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VI35_01555 38768b3f1aee71f58fc122f0c57b7569 254 Gene3D G3DSA:1.10.260.40 4 73 5.2E-7 T 17-10-2018 VI35_01725 eac9b83fa11d8209f5aa9382382b780e 398 Pfam PF05940 NnrS protein 15 392 9.0E-106 T 17-10-2018 IPR010266 NnrS VI35_18580 591fbfec2742bae64c859ac1eda10c7e 72 Pfam PF09583 Phage shock protein G (Phageshock_PspG) 1 63 8.9E-19 T 17-10-2018 IPR014318 Phage shock protein, PspG VI35_18580 591fbfec2742bae64c859ac1eda10c7e 72 TIGRFAM TIGR02975 phageshock_pspG: phage shock protein G 2 64 6.3E-24 T 17-10-2018 IPR014318 Phage shock protein, PspG VI35_20250 1184fe172ed7a0e213f4debed9690d31 166 Gene3D G3DSA:1.20.120.450 2 161 1.9E-45 T 17-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes VI35_20250 1184fe172ed7a0e213f4debed9690d31 166 Pfam PF09351 Domain of unknown function (DUF1993) 4 160 3.5E-53 T 17-10-2018 IPR018531 Protein of unknown function DUF1993 VI35_20250 1184fe172ed7a0e213f4debed9690d31 166 SUPERFAMILY SSF109854 7 162 1.65E-46 T 17-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes VI35_18385 7c3b5f0e1ced4bd568dd134ca3e120a2 356 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 4 354 1.7E-132 T 17-10-2018 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 VI35_18385 7c3b5f0e1ced4bd568dd134ca3e120a2 356 Pfam PF03739 Predicted permease YjgP/YjgQ family 7 354 8.9E-71 T 17-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 VI35_19965 a65daf06d6fa3975f05d0fd56b8b0cdc 509 SUPERFAMILY SSF53649 5 505 4.28E-79 T 17-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VI35_19965 a65daf06d6fa3975f05d0fd56b8b0cdc 509 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 6 507 49.24 T 17-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VI35_19965 a65daf06d6fa3975f05d0fd56b8b0cdc 509 Gene3D G3DSA:3.40.720.10 7 504 3.1E-211 T 17-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VI35_19965 a65daf06d6fa3975f05d0fd56b8b0cdc 509 PIRSF PIRSF001492 1 509 7.8E-204 T 17-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VI35_19965 a65daf06d6fa3975f05d0fd56b8b0cdc 509 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 6 506 1.3E-224 T 17-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VI35_19965 a65daf06d6fa3975f05d0fd56b8b0cdc 509 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 84 295 4.2E-78 T 17-10-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VI35_19965 a65daf06d6fa3975f05d0fd56b8b0cdc 509 Gene3D G3DSA:3.40.1450.10 79 308 3.1E-211 T 17-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VI35_19965 a65daf06d6fa3975f05d0fd56b8b0cdc 509 Pfam PF01676 Metalloenzyme superfamily 6 494 1.8E-78 T 17-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 VI35_19965 a65daf06d6fa3975f05d0fd56b8b0cdc 509 SUPERFAMILY SSF64158 79 306 9.81E-83 T 17-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VI35_11975 aabf96a7664dca598deff12548b7e422 153 Pfam PF10722 Putative bacterial sensory transduction regulator 9 133 6.6E-11 T 17-10-2018 IPR019660 Putative sensory transduction regulator YbjN VI35_19165 bfaa0e68b264a57b28c7c47daf15c34a 101 Pfam PF08803 Putative mono-oxygenase ydhR 4 99 2.3E-33 T 17-10-2018 IPR014910 Putative monooxygenase YdhR VI35_19165 bfaa0e68b264a57b28c7c47daf15c34a 101 SUPERFAMILY SSF54909 4 97 5.9E-24 T 17-10-2018 IPR011008 Dimeric alpha-beta barrel VI35_19165 bfaa0e68b264a57b28c7c47daf15c34a 101 Gene3D G3DSA:3.30.70.100 1 101 3.2E-33 T 17-10-2018 VI35_09525 6e1dfa412100d394afcf56baf8181109 474 PIRSF PIRSF000521 216 463 3.5E-20 T 17-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VI35_09525 6e1dfa412100d394afcf56baf8181109 474 PIRSF PIRSF000521 162 194 41.0 T 17-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VI35_09525 6e1dfa412100d394afcf56baf8181109 474 PIRSF PIRSF000521 40 169 2.4E-5 T 17-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VI35_09525 6e1dfa412100d394afcf56baf8181109 474 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 276 313 - T 17-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VI35_09525 6e1dfa412100d394afcf56baf8181109 474 Gene3D G3DSA:3.40.640.10 100 359 3.4E-117 T 17-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VI35_09525 6e1dfa412100d394afcf56baf8181109 474 Gene3D G3DSA:3.90.1150.10 72 455 3.4E-117 T 17-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VI35_09525 6e1dfa412100d394afcf56baf8181109 474 Pfam PF00202 Aminotransferase class-III 66 460 4.7E-80 T 17-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VI35_09525 6e1dfa412100d394afcf56baf8181109 474 SUPERFAMILY SSF53383 64 462 4.92E-105 T 17-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VI35_01785 e2afef7a6fbceeffbdd569629595976c 210 Pfam PF05494 MlaC protein 36 200 3.3E-49 T 17-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC VI35_01785 e2afef7a6fbceeffbdd569629595976c 210 Gene3D G3DSA:3.10.450.710 27 205 5.8E-46 T 17-10-2018 VI35_01785 e2afef7a6fbceeffbdd569629595976c 210 PIRSF PIRSF004649 1 208 5.2E-61 T 17-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC VI35_17155 4ef43bcb7a9c30d048b4ca8a124e30b8 273 SUPERFAMILY SSF56784 2 271 8.16E-63 T 17-10-2018 IPR036412 HAD-like superfamily VI35_17155 4ef43bcb7a9c30d048b4ca8a124e30b8 273 Gene3D G3DSA:3.30.1240.10 85 195 1.9E-59 T 17-10-2018 VI35_17155 4ef43bcb7a9c30d048b4ca8a124e30b8 273 ProSitePatterns PS01228 Hypothetical cof family signature 1. 6 17 - T 17-10-2018 VI35_17155 4ef43bcb7a9c30d048b4ca8a124e30b8 273 Gene3D G3DSA:3.40.50.1000 6 266 1.9E-59 T 17-10-2018 IPR023214 HAD superfamily VI35_17155 4ef43bcb7a9c30d048b4ca8a124e30b8 273 Pfam PF08282 haloacid dehalogenase-like hydrolase 7 266 3.5E-55 T 17-10-2018 VI35_17155 4ef43bcb7a9c30d048b4ca8a124e30b8 273 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 7 74 1.2E-12 T 17-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 VI35_17155 4ef43bcb7a9c30d048b4ca8a124e30b8 273 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 7 266 1.2E-54 T 17-10-2018 IPR000150 Cof family GO:0016787 VI35_03660 c1f5eaa6baf8961bcf2f75546e197487 149 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 109 141 4.0E-10 T 17-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 VI35_03660 c1f5eaa6baf8961bcf2f75546e197487 149 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 26 148 29.079 T 17-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 VI35_03660 c1f5eaa6baf8961bcf2f75546e197487 149 Gene3D G3DSA:1.20.120.910 18 148 1.1E-33 T 17-10-2018 VI35_03660 c1f5eaa6baf8961bcf2f75546e197487 149 SUPERFAMILY SSF109635 8 108 2.35E-34 T 17-10-2018 IPR037187 DksA, N-terminal domain superfamily VI35_03660 c1f5eaa6baf8961bcf2f75546e197487 149 SUPERFAMILY SSF57716 109 147 6.41E-10 T 17-10-2018 VI35_03660 c1f5eaa6baf8961bcf2f75546e197487 149 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 112 136 - T 17-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site VI35_03660 c1f5eaa6baf8961bcf2f75546e197487 149 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 30 138 6.2E-50 T 17-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 VI35_01130 faf209a3d0f7259f36673a62355df8fb 330 SUPERFAMILY SSF55681 8 330 1.24E-96 T 17-10-2018 VI35_01130 faf209a3d0f7259f36673a62355df8fb 330 Pfam PF03590 Aspartate-ammonia ligase 9 244 5.1E-94 T 17-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 VI35_01130 faf209a3d0f7259f36673a62355df8fb 330 Gene3D G3DSA:3.30.930.10 1 330 1.5E-139 T 17-10-2018 VI35_01130 faf209a3d0f7259f36673a62355df8fb 330 PIRSF PIRSF001555 1 329 4.1E-148 T 17-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 VI35_01130 faf209a3d0f7259f36673a62355df8fb 330 TIGRFAM TIGR00669 asnA: aspartate--ammonia ligase 1 329 1.7E-178 T 17-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 VI35_01130 faf209a3d0f7259f36673a62355df8fb 330 Hamap MF_00555 Aspartate--ammonia ligase [asnA]. 1 330 44.638 T 17-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 VI35_19970 6bb710f25b003c7476a99428db13981f 467 SUPERFAMILY SSF51261 280 464 1.52E-45 T 17-10-2018 IPR011055 Duplicated hybrid motif VI35_19970 6bb710f25b003c7476a99428db13981f 467 Pfam PF01551 Peptidase family M23 367 460 1.1E-25 T 17-10-2018 IPR016047 Peptidase M23 VI35_19970 6bb710f25b003c7476a99428db13981f 467 Gene3D G3DSA:2.70.70.10 328 466 1.1E-35 T 17-10-2018 IPR011055 Duplicated hybrid motif VI35_15210 61a4fc8e8053c3ea3427c2bfca0bc49a 229 SUPERFAMILY SSF52172 3 125 8.54E-44 T 17-10-2018 IPR011006 CheY-like superfamily VI35_15210 61a4fc8e8053c3ea3427c2bfca0bc49a 229 SMART SM00448 3 116 2.1E-47 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_15210 61a4fc8e8053c3ea3427c2bfca0bc49a 229 Pfam PF00072 Response regulator receiver domain 5 116 1.6E-29 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_15210 61a4fc8e8053c3ea3427c2bfca0bc49a 229 SUPERFAMILY SSF46894 129 226 4.54E-32 T 17-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VI35_15210 61a4fc8e8053c3ea3427c2bfca0bc49a 229 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 1 226 1.1E-111 T 17-10-2018 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 VI35_15210 61a4fc8e8053c3ea3427c2bfca0bc49a 229 SMART SM00862 150 225 1.4E-27 T 17-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VI35_15210 61a4fc8e8053c3ea3427c2bfca0bc49a 229 Gene3D G3DSA:1.10.10.10 128 229 2.6E-41 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_15210 61a4fc8e8053c3ea3427c2bfca0bc49a 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 225 1.0E-28 T 17-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VI35_15210 61a4fc8e8053c3ea3427c2bfca0bc49a 229 Gene3D G3DSA:3.40.50.2300 1 127 2.4E-40 T 17-10-2018 VI35_03910 59c7998ea1663996874324b1f611fac6 129 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 87 124 8.2E-8 T 17-10-2018 IPR010221 VCBS repeat VI35_03910 59c7998ea1663996874324b1f611fac6 129 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 2 69 1.7E-21 T 17-10-2018 IPR010221 VCBS repeat VI35_19895 c8000855ba156733468f3259ae764120 103 SUPERFAMILY SSF54999 5 101 1.23E-36 T 17-10-2018 IPR036838 Ribosomal protein S10 domain superfamily VI35_19895 c8000855ba156733468f3259ae764120 103 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 27.412 T 17-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19895 c8000855ba156733468f3259ae764120 103 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 1.2E-18 T 17-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19895 c8000855ba156733468f3259ae764120 103 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 1.2E-18 T 17-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19895 c8000855ba156733468f3259ae764120 103 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 1.2E-18 T 17-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19895 c8000855ba156733468f3259ae764120 103 Pfam PF00338 Ribosomal protein S10p/S20e 7 100 3.0E-35 T 17-10-2018 IPR027486 Ribosomal protein S10 domain VI35_19895 c8000855ba156733468f3259ae764120 103 SMART SM01403 7 101 9.2E-57 T 17-10-2018 IPR027486 Ribosomal protein S10 domain VI35_19895 c8000855ba156733468f3259ae764120 103 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 17-10-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19895 c8000855ba156733468f3259ae764120 103 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 1.3E-46 T 17-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_19895 c8000855ba156733468f3259ae764120 103 Gene3D G3DSA:3.30.70.600 1 103 4.0E-38 T 17-10-2018 IPR036838 Ribosomal protein S10 domain superfamily VI35_12860 4da5a5686ff3b441b68d7102917a59a1 458 Gene3D G3DSA:1.20.1740.10 9 457 2.6E-59 T 17-10-2018 VI35_12860 4da5a5686ff3b441b68d7102917a59a1 458 PIRSF PIRSF006060 1 456 5.5E-72 T 17-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VI35_12860 4da5a5686ff3b441b68d7102917a59a1 458 ProSitePatterns PS00218 Amino acid permeases signature. 43 73 - T 17-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 VI35_12860 4da5a5686ff3b441b68d7102917a59a1 458 Pfam PF00324 Amino acid permease 18 450 8.8E-114 T 17-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 VI35_12555 d6dd400b6a32d36504300d22b50c227e 188 SUPERFAMILY SSF53041 1 137 3.14E-37 T 17-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 VI35_12555 d6dd400b6a32d36504300d22b50c227e 188 Gene3D G3DSA:3.40.50.1390 1 125 5.0E-38 T 17-10-2018 VI35_12555 d6dd400b6a32d36504300d22b50c227e 188 SMART SM00857 2 137 6.2E-49 T 17-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 VI35_12555 d6dd400b6a32d36504300d22b50c227e 188 ProSitePatterns PS00397 Site-specific recombinases active site. 5 13 - T 17-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 VI35_12555 d6dd400b6a32d36504300d22b50c227e 188 ProSitePatterns PS00398 Site-specific recombinases signature 2. 55 67 - T 17-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 VI35_12555 d6dd400b6a32d36504300d22b50c227e 188 Pfam PF00239 Resolvase, N terminal domain 2 137 7.2E-38 T 17-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 VI35_14880 84f9afc5b26dfcdf4b40866b1076cdd2 305 Gene3D G3DSA:2.40.440.10 22 304 2.6E-82 T 17-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like VI35_14880 84f9afc5b26dfcdf4b40866b1076cdd2 305 SUPERFAMILY SSF141523 94 233 1.83E-31 T 17-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like VI35_14880 84f9afc5b26dfcdf4b40866b1076cdd2 305 Pfam PF03734 L,D-transpeptidase catalytic domain 97 233 2.8E-21 T 17-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 VI35_07415 07d691d771c186532401b4d0412942b3 138 SUPERFAMILY SSF160214 37 137 3.79E-20 T 17-10-2018 IPR035924 FlaG-like superfamily VI35_07415 07d691d771c186532401b4d0412942b3 138 Pfam PF03646 FlaG protein 37 135 3.4E-21 T 17-10-2018 IPR005186 FlaG protein VI35_07415 07d691d771c186532401b4d0412942b3 138 Gene3D G3DSA:3.30.160.170 27 121 1.1E-14 T 17-10-2018 IPR035924 FlaG-like superfamily VI35_21215 093fc5a3dba38c449278394b33f80294 82 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 8 76 24.619 T 17-10-2018 IPR002696 Putative membrane protein insertion efficiency factor VI35_21215 093fc5a3dba38c449278394b33f80294 82 SMART SM01234 8 75 9.6E-44 T 17-10-2018 IPR002696 Putative membrane protein insertion efficiency factor VI35_21215 093fc5a3dba38c449278394b33f80294 82 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 23 75 2.0E-21 T 17-10-2018 IPR002696 Putative membrane protein insertion efficiency factor VI35_21215 093fc5a3dba38c449278394b33f80294 82 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 13 81 1.6E-32 T 17-10-2018 IPR002696 Putative membrane protein insertion efficiency factor VI35_21215 093fc5a3dba38c449278394b33f80294 82 Pfam PF01809 Haemolytic domain 10 75 4.0E-30 T 17-10-2018 IPR002696 Putative membrane protein insertion efficiency factor VI35_14795 a38f14e68bf203d1163df72e8988896f 202 Gene3D G3DSA:2.60.120.10 92 201 1.1E-17 T 17-10-2018 IPR014710 RmlC-like jelly roll fold VI35_14795 a38f14e68bf203d1163df72e8988896f 202 SUPERFAMILY SSF51182 68 201 3.75E-30 T 17-10-2018 IPR011051 RmlC-like cupin domain superfamily VI35_14795 a38f14e68bf203d1163df72e8988896f 202 SMART SM00530 28 83 3.6E-10 T 17-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VI35_14795 a38f14e68bf203d1163df72e8988896f 202 Pfam PF07883 Cupin domain 128 195 3.4E-16 T 17-10-2018 IPR013096 Cupin 2, conserved barrel VI35_14795 a38f14e68bf203d1163df72e8988896f 202 SUPERFAMILY SSF47413 23 88 1.44E-14 T 17-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VI35_14795 a38f14e68bf203d1163df72e8988896f 202 Pfam PF13560 Helix-turn-helix domain 25 80 9.7E-10 T 17-10-2018 VI35_14795 a38f14e68bf203d1163df72e8988896f 202 Gene3D G3DSA:1.10.260.40 18 91 3.1E-16 T 17-10-2018 VI35_12040 cd934b67525c2372808d70eefbfce300 94 Hamap MF_01948 Lipopolysaccharide assembly protein A [lapA]. 1 94 20.974 T 17-10-2018 IPR032906 Lipopolysaccharide assembly protein A GO:0005886|GO:0008653 VI35_12040 cd934b67525c2372808d70eefbfce300 94 Pfam PF06305 Lipopolysaccharide assembly protein A domain 23 86 1.3E-16 T 17-10-2018 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 VI35_14515 12c6802027ed20830fe58a64ccd328e1 569 SUPERFAMILY SSF51735 278 568 3.94E-86 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_14515 12c6802027ed20830fe58a64ccd328e1 569 SMART SM01274 88 268 2.8E-96 T 17-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 VI35_14515 12c6802027ed20830fe58a64ccd328e1 569 PRINTS PR00072 Malic enzyme signature 274 290 1.2E-69 T 17-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VI35_14515 12c6802027ed20830fe58a64ccd328e1 569 PRINTS PR00072 Malic enzyme signature 305 321 1.2E-69 T 17-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VI35_14515 12c6802027ed20830fe58a64ccd328e1 569 PRINTS PR00072 Malic enzyme signature 249 267 1.2E-69 T 17-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VI35_14515 12c6802027ed20830fe58a64ccd328e1 569 PRINTS PR00072 Malic enzyme signature 94 118 1.2E-69 T 17-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VI35_14515 12c6802027ed20830fe58a64ccd328e1 569 PRINTS PR00072 Malic enzyme signature 190 212 1.2E-69 T 17-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VI35_14515 12c6802027ed20830fe58a64ccd328e1 569 PRINTS PR00072 Malic enzyme signature 414 430 1.2E-69 T 17-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VI35_14515 12c6802027ed20830fe58a64ccd328e1 569 PRINTS PR00072 Malic enzyme signature 154 183 1.2E-69 T 17-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VI35_14515 12c6802027ed20830fe58a64ccd328e1 569 Pfam PF00390 Malic enzyme, N-terminal domain 88 268 1.7E-69 T 17-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 VI35_14515 12c6802027ed20830fe58a64ccd328e1 569 SUPERFAMILY SSF53223 8 277 1.01E-99 T 17-10-2018 VI35_14515 12c6802027ed20830fe58a64ccd328e1 569 SMART SM00919 278 537 1.2E-109 T 17-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 VI35_14515 12c6802027ed20830fe58a64ccd328e1 569 Gene3D G3DSA:3.40.50.720 276 568 2.4E-100 T 17-10-2018 VI35_14515 12c6802027ed20830fe58a64ccd328e1 569 ProSitePatterns PS00331 Malic enzymes signature. 274 290 - T 17-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 VI35_14515 12c6802027ed20830fe58a64ccd328e1 569 Pfam PF03949 Malic enzyme, NAD binding domain 278 535 4.8E-93 T 17-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 VI35_14515 12c6802027ed20830fe58a64ccd328e1 569 Gene3D G3DSA:3.40.50.10380 22 275 1.3E-103 T 17-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 VI35_14515 12c6802027ed20830fe58a64ccd328e1 569 PIRSF PIRSF000106 1 569 4.4E-215 T 17-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VI35_19520 eb2ded15d6f4f1d2ec814bf321c52deb 510 Hamap MF_00229 Histidine ammonia-lyase [hutH]. 3 504 43.68 T 17-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VI35_19520 eb2ded15d6f4f1d2ec814bf321c52deb 510 Pfam PF00221 Aromatic amino acid lyase 12 462 9.3E-185 T 17-10-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 VI35_19520 eb2ded15d6f4f1d2ec814bf321c52deb 510 Gene3D G3DSA:1.20.200.10 198 509 4.8E-120 T 17-10-2018 VI35_19520 eb2ded15d6f4f1d2ec814bf321c52deb 510 SUPERFAMILY SSF48557 6 498 2.28E-189 T 17-10-2018 IPR008948 L-Aspartase-like GO:0003824 VI35_19520 eb2ded15d6f4f1d2ec814bf321c52deb 510 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 139 154 - T 17-10-2018 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 Reactome: R-HSA-70921 VI35_19520 eb2ded15d6f4f1d2ec814bf321c52deb 510 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 5 507 6.7E-212 T 17-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VI35_19520 eb2ded15d6f4f1d2ec814bf321c52deb 510 Gene3D G3DSA:1.10.275.10 2 197 6.4E-69 T 17-10-2018 IPR024083 Fumarase/histidase, N-terminal VI35_17860 44bee3e2bd6908fecb7b2411568f110d 167 Pfam PF01252 Signal peptidase (SPase) II 16 156 2.5E-39 T 17-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 VI35_17860 44bee3e2bd6908fecb7b2411568f110d 167 ProSitePatterns PS00855 Signal peptidases II signature. 105 117 - T 17-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 VI35_17860 44bee3e2bd6908fecb7b2411568f110d 167 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 7 163 17.416 T 17-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 VI35_17860 44bee3e2bd6908fecb7b2411568f110d 167 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 138 154 4.4E-18 T 17-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 VI35_17860 44bee3e2bd6908fecb7b2411568f110d 167 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 54 62 4.4E-18 T 17-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 VI35_17860 44bee3e2bd6908fecb7b2411568f110d 167 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 102 117 4.4E-18 T 17-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 VI35_17860 44bee3e2bd6908fecb7b2411568f110d 167 TIGRFAM TIGR00077 lspA: signal peptidase II 5 163 2.9E-48 T 17-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 VI35_10910 2c17cc4e91c0c45e67c17e0280e35498 75 SUPERFAMILY SSF52833 1 74 7.95E-14 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_10910 2c17cc4e91c0c45e67c17e0280e35498 75 Pfam PF05768 Glutaredoxin-like domain (DUF836) 2 72 1.7E-12 T 17-10-2018 IPR008554 Glutaredoxin-like VI35_10910 2c17cc4e91c0c45e67c17e0280e35498 75 Gene3D G3DSA:3.40.30.10 1 75 6.3E-20 T 17-10-2018 VI35_04025 df376903593d54f9d37ee3f1a8ad3b9d 122 Pfam PF09834 Predicted membrane protein (DUF2061) 1 51 3.4E-20 T 17-10-2018 IPR018638 Domain of unknown function DUF2061, membrane VI35_04025 df376903593d54f9d37ee3f1a8ad3b9d 122 Pfam PF09834 Predicted membrane protein (DUF2061) 62 111 1.7E-20 T 17-10-2018 IPR018638 Domain of unknown function DUF2061, membrane VI35_08250 7bd4bbbbf1273b28ff9e2b040b0e7f97 474 Pfam PF01593 Flavin containing amine oxidoreductase 17 281 3.9E-20 T 17-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 VI35_08250 7bd4bbbbf1273b28ff9e2b040b0e7f97 474 Gene3D G3DSA:3.50.50.60 1 473 6.5E-107 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_08250 7bd4bbbbf1273b28ff9e2b040b0e7f97 474 SUPERFAMILY SSF51905 7 449 3.75E-47 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_08250 7bd4bbbbf1273b28ff9e2b040b0e7f97 474 PRINTS PR00419 Adrenodoxin reductase family signature 31 44 1.6E-8 T 17-10-2018 VI35_08250 7bd4bbbbf1273b28ff9e2b040b0e7f97 474 PRINTS PR00419 Adrenodoxin reductase family signature 8 30 1.6E-8 T 17-10-2018 VI35_16295 88b3c3e195fda6753f9090d0f86ee81c 71 Pfam PF04102 SlyX 5 71 2.4E-24 T 17-10-2018 IPR007236 SlyX VI35_16295 88b3c3e195fda6753f9090d0f86ee81c 71 SUPERFAMILY SSF57997 3 53 1.63E-5 T 17-10-2018 VI35_16295 88b3c3e195fda6753f9090d0f86ee81c 71 Hamap MF_00715 Protein SlyX [slyX]. 4 71 16.625 T 17-10-2018 IPR007236 SlyX VI35_20620 056b11ac44de8106a2634b2cd8467ef1 165 Gene3D G3DSA:3.90.1010.10 22 165 2.1E-44 T 17-10-2018 VI35_20620 056b11ac44de8106a2634b2cd8467ef1 165 SUPERFAMILY SSF82649 28 164 4.34E-44 T 17-10-2018 VI35_20620 056b11ac44de8106a2634b2cd8467ef1 165 Pfam PF02657 Fe-S metabolism associated domain 42 162 7.6E-41 T 17-10-2018 IPR003808 Fe-S metabolism associated domain, SufE-like VI35_13125 395bbfbe65430e0f663e670d1a7a01a9 448 Pfam PF03553 Na+/H+ antiporter family 47 217 7.2E-16 T 17-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 VI35_13125 395bbfbe65430e0f663e670d1a7a01a9 448 Pfam PF03553 Na+/H+ antiporter family 240 434 1.2E-6 T 17-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 VI35_03210 9c77329737624f0edc54017b2ada6121 433 Pfam PF01266 FAD dependent oxidoreductase 36 389 2.6E-50 T 17-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 VI35_03210 9c77329737624f0edc54017b2ada6121 433 Gene3D G3DSA:3.30.9.10 128 350 1.1E-70 T 17-10-2018 VI35_03210 9c77329737624f0edc54017b2ada6121 433 Gene3D G3DSA:3.50.50.60 36 391 1.1E-70 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_03210 9c77329737624f0edc54017b2ada6121 433 SUPERFAMILY SSF51905 35 426 8.88E-48 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_09035 ed3cd38f6c8bfa83403dbaf5e4cbdecc 153 Gene3D G3DSA:2.30.110.60 1 150 3.5E-51 T 17-10-2018 VI35_09035 ed3cd38f6c8bfa83403dbaf5e4cbdecc 153 Pfam PF16461 Lambda phage tail tube protein, TTP 6 150 3.7E-34 T 17-10-2018 IPR032494 Lambda phage tail tube protein VI35_13030 72922dd1fd085697d445f74a34bc2c5c 225 Gene3D G3DSA:1.10.3720.10 7 220 5.0E-54 T 17-10-2018 IPR035906 MetI-like superfamily VI35_13030 72922dd1fd085697d445f74a34bc2c5c 225 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 110 2.2E-30 T 17-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 VI35_13030 72922dd1fd085697d445f74a34bc2c5c 225 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 216 4.6E-20 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_13030 72922dd1fd085697d445f74a34bc2c5c 225 SUPERFAMILY SSF161098 13 201 1.7E-46 T 17-10-2018 IPR035906 MetI-like superfamily VI35_15190 8a5c3d65dcc1f016d163b32ca80880b7 168 SUPERFAMILY SSF55729 5 165 5.77E-25 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_15190 8a5c3d65dcc1f016d163b32ca80880b7 168 Pfam PF00583 Acetyltransferase (GNAT) family 60 143 3.1E-10 T 17-10-2018 IPR000182 GNAT domain VI35_15190 8a5c3d65dcc1f016d163b32ca80880b7 168 Gene3D G3DSA:3.40.630.30 5 162 7.6E-30 T 17-10-2018 VI35_07850 1839f51530cc918043ba784d7da018b2 283 SMART SM00507 199 258 6.6E-7 T 17-10-2018 IPR003615 HNH nuclease VI35_07850 1839f51530cc918043ba784d7da018b2 283 Pfam PF01844 HNH endonuclease 221 262 5.9E-12 T 17-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 VI35_07850 1839f51530cc918043ba784d7da018b2 283 Gene3D G3DSA:3.30.40.60 219 278 3.9E-6 T 17-10-2018 VI35_14030 668daf56acf410ba05e7335fcc0814d4 199 SUPERFAMILY SSF52317 3 189 2.69E-47 T 17-10-2018 IPR029062 Class I glutamine amidotransferase-like VI35_14030 668daf56acf410ba05e7335fcc0814d4 199 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 4 187 4.9E-54 T 17-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VI35_14030 668daf56acf410ba05e7335fcc0814d4 199 Pfam PF00117 Glutamine amidotransferase class-I 6 188 1.1E-43 T 17-10-2018 IPR017926 Glutamine amidotransferase VI35_14030 668daf56acf410ba05e7335fcc0814d4 199 PRINTS PR00097 Anthranilate synthase component II signature 53 62 3.6E-35 T 17-10-2018 VI35_14030 668daf56acf410ba05e7335fcc0814d4 199 PRINTS PR00097 Anthranilate synthase component II signature 167 180 3.6E-35 T 17-10-2018 VI35_14030 668daf56acf410ba05e7335fcc0814d4 199 PRINTS PR00097 Anthranilate synthase component II signature 80 91 3.6E-35 T 17-10-2018 VI35_14030 668daf56acf410ba05e7335fcc0814d4 199 PRINTS PR00097 Anthranilate synthase component II signature 125 137 3.6E-35 T 17-10-2018 VI35_14030 668daf56acf410ba05e7335fcc0814d4 199 PRINTS PR00097 Anthranilate synthase component II signature 105 113 3.6E-35 T 17-10-2018 VI35_14030 668daf56acf410ba05e7335fcc0814d4 199 PRINTS PR00097 Anthranilate synthase component II signature 4 18 3.6E-35 T 17-10-2018 VI35_14030 668daf56acf410ba05e7335fcc0814d4 199 PRINTS PR00096 Glutamine amidotransferase superfamily signature 167 180 5.3E-14 T 17-10-2018 VI35_14030 668daf56acf410ba05e7335fcc0814d4 199 PRINTS PR00096 Glutamine amidotransferase superfamily signature 53 62 5.3E-14 T 17-10-2018 VI35_14030 668daf56acf410ba05e7335fcc0814d4 199 PRINTS PR00096 Glutamine amidotransferase superfamily signature 80 91 5.3E-14 T 17-10-2018 VI35_14030 668daf56acf410ba05e7335fcc0814d4 199 Gene3D G3DSA:3.40.50.880 2 191 1.8E-57 T 17-10-2018 IPR029062 Class I glutamine amidotransferase-like VI35_14030 668daf56acf410ba05e7335fcc0814d4 199 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 50 64 1.7E-5 T 17-10-2018 VI35_14030 668daf56acf410ba05e7335fcc0814d4 199 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 80 96 1.7E-5 T 17-10-2018 VI35_13650 400e7d27aead5fd7d714c1cea5322ab7 139 Pfam PF00460 Flagella basal body rod protein 7 32 1.1E-7 T 17-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 VI35_13650 400e7d27aead5fd7d714c1cea5322ab7 139 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 4 138 4.5E-49 T 17-10-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 VI35_13650 400e7d27aead5fd7d714c1cea5322ab7 139 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 17-10-2018 IPR019776 Flagellar basal body rod protein, conserved site VI35_13650 400e7d27aead5fd7d714c1cea5322ab7 139 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 91 136 1.4E-12 T 17-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain VI35_06180 725af14f74f2dced13ab7921f3946993 329 Gene3D G3DSA:3.40.190.170 30 326 5.7E-101 T 17-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily VI35_06180 725af14f74f2dced13ab7921f3946993 329 SUPERFAMILY SSF53850 132 270 9.96E-6 T 17-10-2018 VI35_06180 725af14f74f2dced13ab7921f3946993 329 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 33 277 1.5E-73 T 17-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 VI35_06180 725af14f74f2dced13ab7921f3946993 329 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 33 312 1.1E-79 T 17-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 VI35_06180 725af14f74f2dced13ab7921f3946993 329 PIRSF PIRSF006470 1 327 2.5E-84 T 17-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 VI35_10795 70e843fbae342294b33aad20cd02e315 319 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 1 318 4.4E-137 T 17-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 VI35_10795 70e843fbae342294b33aad20cd02e315 319 SUPERFAMILY SSF53901 3 318 3.1E-69 T 17-10-2018 IPR016039 Thiolase-like GO:0003824 VI35_10795 70e843fbae342294b33aad20cd02e315 319 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 230 318 5.8E-35 T 17-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 VI35_10795 70e843fbae342294b33aad20cd02e315 319 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 1 319 69.156 T 17-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 VI35_10795 70e843fbae342294b33aad20cd02e315 319 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 106 183 1.8E-31 T 17-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 VI35_10795 70e843fbae342294b33aad20cd02e315 319 Gene3D G3DSA:3.40.47.10 1 319 1.3E-121 T 17-10-2018 IPR016039 Thiolase-like GO:0003824 VI35_14690 ac68dafa9b23bb5c190400735e090a14 387 Pfam PF05762 VWA domain containing CoxE-like protein 184 273 9.4E-9 T 17-10-2018 IPR008912 Uncharacterised protein family CoxE-like VI35_19330 9d342727b4a6fa9ca9ee7093f5610ba5 124 SUPERFAMILY SSF52091 10 116 1.0E-8 T 17-10-2018 IPR036513 STAS domain superfamily VI35_19330 9d342727b4a6fa9ca9ee7093f5610ba5 124 Gene3D G3DSA:3.30.750.24 6 123 6.7E-15 T 17-10-2018 IPR036513 STAS domain superfamily VI35_17145 12cdd5a41540ddda7929b796c57dcb7f 279 Pfam PF14226 non-haem dioxygenase in morphine synthesis N-terminal 11 96 2.3E-9 T 17-10-2018 IPR026992 Non-haem dioxygenase N-terminal domain VI35_17145 12cdd5a41540ddda7929b796c57dcb7f 279 Gene3D G3DSA:2.60.120.330 1 279 8.8E-92 T 17-10-2018 IPR027443 Isopenicillin N synthase-like VI35_17145 12cdd5a41540ddda7929b796c57dcb7f 279 SUPERFAMILY SSF51197 7 276 1.72E-60 T 17-10-2018 VI35_17145 12cdd5a41540ddda7929b796c57dcb7f 279 Pfam PF03171 2OG-Fe(II) oxygenase superfamily 152 253 1.7E-15 T 17-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 VI35_06535 7317df7219a9650f0423a207506fc943 484 Pfam PF00367 phosphotransferase system, EIIB 412 445 4.9E-13 T 17-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VI35_06535 7317df7219a9650f0423a207506fc943 484 SUPERFAMILY SSF55604 409 482 5.62E-20 T 17-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VI35_06535 7317df7219a9650f0423a207506fc943 484 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 423 440 - T 17-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VI35_06535 7317df7219a9650f0423a207506fc943 484 Gene3D G3DSA:3.30.1360.60 405 484 3.8E-25 T 17-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VI35_06535 7317df7219a9650f0423a207506fc943 484 TIGRFAM TIGR01998 PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component 3 481 8.1E-216 T 17-10-2018 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component GO:0008982|GO:0009401|GO:0015572|GO:0016021|GO:0019866 VI35_06535 7317df7219a9650f0423a207506fc943 484 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 384 470 1.2E-21 T 17-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 VI35_06535 7317df7219a9650f0423a207506fc943 484 Pfam PF02378 Phosphotransferase system, EIIC 12 324 3.8E-80 T 17-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 VI35_07330 407ce8c80222564cbddca45c3366c58f 213 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 7 201 4.4E-8 T 17-10-2018 IPR002751 Metal transport protein CbiM/NikMN GO:0000041|GO:0016021 VI35_16980 7e617c271c4501ea9996d35dc642e1e7 201 Pfam PF01810 LysE type translocator 13 193 5.8E-9 T 17-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VI35_08520 0ef8fb389493490ec64807bf51e1d84e 341 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 1 27 2.1E-5 T 17-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal VI35_08520 0ef8fb389493490ec64807bf51e1d84e 341 Pfam PF13247 4Fe-4S dicluster domain 107 208 6.8E-24 T 17-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VI35_08520 0ef8fb389493490ec64807bf51e1d84e 341 Gene3D G3DSA:3.30.70.20 37 227 2.5E-49 T 17-10-2018 VI35_08520 0ef8fb389493490ec64807bf51e1d84e 341 SUPERFAMILY SSF54862 39 326 5.19E-70 T 17-10-2018 VI35_08520 0ef8fb389493490ec64807bf51e1d84e 341 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 146 157 - T 17-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VI35_08520 0ef8fb389493490ec64807bf51e1d84e 341 Gene3D G3DSA:3.30.70.20 36 177 2.5E-49 T 17-10-2018 VI35_13550 362c799c161c9d03e30e66047e6169cf 216 Gene3D G3DSA:3.40.50.170 6 216 4.3E-86 T 17-10-2018 VI35_13550 362c799c161c9d03e30e66047e6169cf 216 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 138 161 - T 17-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 VI35_13550 362c799c161c9d03e30e66047e6169cf 216 SUPERFAMILY SSF53328 6 204 2.35E-66 T 17-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 VI35_13550 362c799c161c9d03e30e66047e6169cf 216 Pfam PF00551 Formyl transferase 6 186 4.5E-63 T 17-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 VI35_13550 362c799c161c9d03e30e66047e6169cf 216 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 7 192 31.613 T 17-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 VI35_13550 362c799c161c9d03e30e66047e6169cf 216 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 6 196 6.3E-77 T 17-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 VI35_17970 12af420f3e4702b8fc184fbde137a749 155 Gene3D G3DSA:1.10.10.10 1 141 6.4E-36 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_17970 12af420f3e4702b8fc184fbde137a749 155 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 129 2.2E-35 T 17-10-2018 IPR000944 Transcription regulator Rrf2-type VI35_17970 12af420f3e4702b8fc184fbde137a749 155 SUPERFAMILY SSF46785 2 133 1.69E-34 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_17970 12af420f3e4702b8fc184fbde137a749 155 Pfam PF02082 Transcriptional regulator 1 83 5.6E-24 T 17-10-2018 IPR000944 Transcription regulator Rrf2-type VI35_15430 ba88e172f9f6f425d0ae17d58f65da8d 145 Gene3D G3DSA:2.40.128.460 19 145 4.8E-56 T 17-10-2018 IPR038643 PliI superfamily VI35_15430 ba88e172f9f6f425d0ae17d58f65da8d 145 Pfam PF16743 Periplasmic lysozyme inhibitor of I-type lysozyme 23 142 2.3E-48 T 17-10-2018 IPR031948 Periplasmic lysozyme inhibitor, I-type VI35_00915 1b9d0de553c574125612c8a449d487ab 282 Pfam PF05036 Sporulation related domain 205 278 2.9E-13 T 17-10-2018 IPR007730 Sporulation-like domain GO:0042834 VI35_00915 1b9d0de553c574125612c8a449d487ab 282 SUPERFAMILY SSF110997 204 279 6.15E-15 T 17-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 VI35_00915 1b9d0de553c574125612c8a449d487ab 282 Gene3D G3DSA:3.30.70.1070 199 282 1.5E-22 T 17-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 VI35_02545 fe76a69fdacd76ed1ede4c64f652c645 152 Gene3D G3DSA:3.40.50.1380 1 152 1.1E-60 T 17-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily VI35_02545 fe76a69fdacd76ed1ede4c64f652c645 152 PIRSF PIRSF006614 8 151 2.1E-60 T 17-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 VI35_02545 fe76a69fdacd76ed1ede4c64f652c645 152 Hamap MF_00549 Methylglyoxal synthase [mgsA]. 12 131 30.864 T 17-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 VI35_02545 fe76a69fdacd76ed1ede4c64f652c645 152 SMART SM00851 25 118 6.6E-18 T 17-10-2018 IPR011607 Methylglyoxal synthase-like domain VI35_02545 fe76a69fdacd76ed1ede4c64f652c645 152 ProSitePatterns PS01335 Methylglyoxal synthase active site. 65 73 - T 17-10-2018 IPR018148 Methylglyoxal synthase, active site GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 VI35_02545 fe76a69fdacd76ed1ede4c64f652c645 152 Pfam PF02142 MGS-like domain 35 118 8.9E-16 T 17-10-2018 IPR011607 Methylglyoxal synthase-like domain VI35_02545 fe76a69fdacd76ed1ede4c64f652c645 152 SUPERFAMILY SSF52335 5 147 1.76E-53 T 17-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily VI35_02545 fe76a69fdacd76ed1ede4c64f652c645 152 TIGRFAM TIGR00160 MGSA: methylglyoxal synthase 11 151 5.6E-59 T 17-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 VI35_01815 69c78fdafcc179181083e574f657b6e7 186 Hamap MF_01915 Lipopolysaccharide export system protein LptC [lptC]. 2 184 22.878 T 17-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 VI35_01815 69c78fdafcc179181083e574f657b6e7 186 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 11 181 2.3E-37 T 17-10-2018 IPR010664 Lipopolysaccharide assembly, LptC-related VI35_01815 69c78fdafcc179181083e574f657b6e7 186 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 6 181 2.3E-45 T 17-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 VI35_01815 69c78fdafcc179181083e574f657b6e7 186 Gene3D G3DSA:2.60.450.10 59 186 2.4E-34 T 17-10-2018 VI35_01815 69c78fdafcc179181083e574f657b6e7 186 PIRSF PIRSF028513 1 185 5.7E-38 T 17-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 VI35_02215 6bcfa16cece4b269fd36c6f14e5afaca 104 Pfam PF04999 Cell division protein FtsL 8 102 2.6E-29 T 17-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 VI35_02215 6bcfa16cece4b269fd36c6f14e5afaca 104 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 20 93 7.4E-19 T 17-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 VI35_02215 6bcfa16cece4b269fd36c6f14e5afaca 104 Hamap MF_00910 Cell division protein FtsL [ftsL]. 18 101 14.642 T 17-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 VI35_12165 3193b7a48d16dbc39319c027c9dfa9eb 205 Gene3D G3DSA:3.10.310.50 85 200 1.0E-26 T 17-10-2018 VI35_12165 3193b7a48d16dbc39319c027c9dfa9eb 205 Pfam PF04536 TPM domain 109 179 4.5E-8 T 17-10-2018 IPR007621 TPM domain VI35_16575 d598a61bfd78b3b7afcd75105b309211 383 Pfam PF12221 Bacterial membrane protein N terminal 1 46 1.3E-16 T 17-10-2018 IPR020980 Menbrane protein HflK, N-terminal VI35_16575 d598a61bfd78b3b7afcd75105b309211 383 SUPERFAMILY SSF117892 105 237 7.98E-22 T 17-10-2018 IPR036013 Band 7/SPFH domain superfamily VI35_16575 d598a61bfd78b3b7afcd75105b309211 383 PRINTS PR00721 Stomatin signature 79 101 8.7E-6 T 17-10-2018 IPR001972 Stomatin family GO:0016020 VI35_16575 d598a61bfd78b3b7afcd75105b309211 383 PRINTS PR00721 Stomatin signature 126 147 8.7E-6 T 17-10-2018 IPR001972 Stomatin family GO:0016020 VI35_16575 d598a61bfd78b3b7afcd75105b309211 383 PRINTS PR00721 Stomatin signature 182 205 8.7E-6 T 17-10-2018 IPR001972 Stomatin family GO:0016020 VI35_16575 d598a61bfd78b3b7afcd75105b309211 383 TIGRFAM TIGR01933 hflK: HflK protein 74 335 1.1E-111 T 17-10-2018 IPR010201 HflK GO:0016021 VI35_16575 d598a61bfd78b3b7afcd75105b309211 383 Gene3D G3DSA:3.30.479.30 101 234 2.0E-18 T 17-10-2018 VI35_16575 d598a61bfd78b3b7afcd75105b309211 383 SMART SM00244 72 232 2.9E-42 T 17-10-2018 IPR001107 Band 7 domain VI35_16575 d598a61bfd78b3b7afcd75105b309211 383 Pfam PF01145 SPFH domain / Band 7 family 76 247 3.7E-24 T 17-10-2018 IPR001107 Band 7 domain VI35_19170 f7beb752644e638483e49058d362d68a 188 SUPERFAMILY SSF55729 20 169 3.84E-37 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_19170 f7beb752644e638483e49058d362d68a 188 Pfam PF13302 Acetyltransferase (GNAT) domain 29 167 4.9E-27 T 17-10-2018 IPR000182 GNAT domain VI35_19170 f7beb752644e638483e49058d362d68a 188 Gene3D G3DSA:3.40.630.30 6 177 6.7E-38 T 17-10-2018 VI35_04240 616a7ceceb4402710b787ac0a2f22059 181 SUPERFAMILY SSF53098 5 180 2.5E-44 T 17-10-2018 IPR012337 Ribonuclease H-like superfamily VI35_04240 616a7ceceb4402710b787ac0a2f22059 181 Hamap MF_00045 Oligoribonuclease [orn]. 3 181 41.846 T 17-10-2018 IPR022894 Oligoribonuclease GO:0000175 VI35_04240 616a7ceceb4402710b787ac0a2f22059 181 SMART SM00479 7 180 2.1E-16 T 17-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VI35_04240 616a7ceceb4402710b787ac0a2f22059 181 Pfam PF00929 Exonuclease 9 170 1.1E-35 T 17-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VI35_04240 616a7ceceb4402710b787ac0a2f22059 181 Gene3D G3DSA:3.30.420.10 1 181 6.9E-70 T 17-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VI35_09970 20b27998b8d35c2b1154f35f201358d0 137 Pfam PF00583 Acetyltransferase (GNAT) family 25 126 8.9E-11 T 17-10-2018 IPR000182 GNAT domain VI35_09970 20b27998b8d35c2b1154f35f201358d0 137 Gene3D G3DSA:3.40.630.30 1 134 1.3E-22 T 17-10-2018 VI35_09970 20b27998b8d35c2b1154f35f201358d0 137 SUPERFAMILY SSF55729 1 130 1.69E-21 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_19560 4e6dff369cb2942cc77cf8ecb5d21414 222 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 1 214 2.2E-88 T 17-10-2018 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 VI35_19560 4e6dff369cb2942cc77cf8ecb5d21414 222 SMART SM00382 27 214 1.8E-11 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_19560 4e6dff369cb2942cc77cf8ecb5d21414 222 SUPERFAMILY SSF52540 1 219 1.24E-66 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_19560 4e6dff369cb2942cc77cf8ecb5d21414 222 Gene3D G3DSA:3.40.50.300 1 222 1.2E-61 T 17-10-2018 VI35_19560 4e6dff369cb2942cc77cf8ecb5d21414 222 Pfam PF00005 ABC transporter 18 165 2.2E-35 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_19560 4e6dff369cb2942cc77cf8ecb5d21414 222 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_10320 583a41e6f708efa2ce3b4ac18f1f4910 270 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 2 268 1.3E-112 T 17-10-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 VI35_10320 583a41e6f708efa2ce3b4ac18f1f4910 270 SUPERFAMILY SSF52540 1 268 3.4E-55 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_10320 583a41e6f708efa2ce3b4ac18f1f4910 270 PIRSF PIRSF003092 1 270 9.4E-98 T 17-10-2018 IPR025501 ATP binding protein MinD VI35_10320 583a41e6f708efa2ce3b4ac18f1f4910 270 Pfam PF13614 AAA domain 3 157 1.8E-21 T 17-10-2018 IPR025669 AAA domain VI35_10320 583a41e6f708efa2ce3b4ac18f1f4910 270 Gene3D G3DSA:3.40.50.300 1 260 3.2E-76 T 17-10-2018 VI35_20550 3fdf194b880e056a661797a3fcec144a 349 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 74 288 1.2E-22 T 17-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 VI35_20550 3fdf194b880e056a661797a3fcec144a 349 Gene3D G3DSA:3.40.50.2000 158 330 4.1E-28 T 17-10-2018 VI35_20550 3fdf194b880e056a661797a3fcec144a 349 SUPERFAMILY SSF53756 1 305 8.63E-64 T 17-10-2018 VI35_20550 3fdf194b880e056a661797a3fcec144a 349 Gene3D G3DSA:3.40.50.2000 1 155 4.5E-31 T 17-10-2018 VI35_06210 13894890892b18e4bcb42efe53c5ee9b 144 Gene3D G3DSA:3.30.530.20 2 144 5.8E-37 T 17-10-2018 IPR023393 START-like domain superfamily VI35_06210 13894890892b18e4bcb42efe53c5ee9b 144 SUPERFAMILY SSF55961 1 143 2.02E-33 T 17-10-2018 VI35_06210 13894890892b18e4bcb42efe53c5ee9b 144 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 13 134 2.8E-30 T 17-10-2018 IPR005031 Coenzyme Q-binding protein COQ10, START domain Reactome: R-HSA-611105 VI35_09350 f18469687ebdd033d2602009925cbaf2 327 Gene3D G3DSA:3.40.50.2300 133 318 1.4E-128 T 17-10-2018 VI35_09350 f18469687ebdd033d2602009925cbaf2 327 PIRSF PIRSF002816 2 327 7.6E-147 T 17-10-2018 IPR026266 L-arabinose-binding periplasmic protein GO:0042882 VI35_09350 f18469687ebdd033d2602009925cbaf2 327 SUPERFAMILY SSF53822 27 325 8.01E-66 T 17-10-2018 IPR028082 Periplasmic binding protein-like I VI35_09350 f18469687ebdd033d2602009925cbaf2 327 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 27 320 5.8E-80 T 17-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain VI35_09350 f18469687ebdd033d2602009925cbaf2 327 Gene3D G3DSA:3.40.50.2300 28 309 1.4E-128 T 17-10-2018 VI35_06790 c4a3649c2ca0eda65046583148891c78 141 Pfam PF00042 Globin 5 99 1.0E-9 T 17-10-2018 IPR000971 Globin GO:0020037 VI35_06790 c4a3649c2ca0eda65046583148891c78 141 SUPERFAMILY SSF46458 1 134 6.82E-29 T 17-10-2018 IPR009050 Globin-like superfamily VI35_06790 c4a3649c2ca0eda65046583148891c78 141 Gene3D G3DSA:1.10.490.10 1 134 6.0E-32 T 17-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 VI35_11670 0ea0eb8d4a4400469ccdc5ca5ae65086 220 Pfam PF09335 SNARE associated Golgi protein 49 174 8.5E-22 T 17-10-2018 IPR032816 SNARE associated Golgi protein VI35_11675 0bde91da4d09cfa3237d96215d4a62ed 85 Pfam PF06803 Protein of unknown function (DUF1232) 28 64 4.8E-11 T 17-10-2018 IPR010652 Domain of unknown function DUF1232 MetaCyc: PWY-7511 VI35_13335 2e73a11e6f439279184a6e786426212f 253 Hamap MF_00057 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 1 252 45.877 T 17-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 VI35_13335 2e73a11e6f439279184a6e786426212f 253 Gene3D G3DSA:3.90.550.10 1 252 5.0E-96 T 17-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VI35_13335 2e73a11e6f439279184a6e786426212f 253 Pfam PF02348 Cytidylyltransferase 4 225 1.1E-65 T 17-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 VI35_13335 2e73a11e6f439279184a6e786426212f 253 SUPERFAMILY SSF53448 3 251 5.41E-65 T 17-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VI35_13335 2e73a11e6f439279184a6e786426212f 253 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 1 245 1.3E-117 T 17-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 VI35_03550 4e2e5de1ab39292b9ce154dfeb175fe6 282 TIGRFAM TIGR03899 TIGR03899: TIGR03899 family protein 22 267 1.5E-89 T 17-10-2018 IPR021254 Protein of unknown function DUF2806 VI35_03550 4e2e5de1ab39292b9ce154dfeb175fe6 282 Pfam PF10987 Protein of unknown function (DUF2806) 42 258 1.6E-72 T 17-10-2018 IPR021254 Protein of unknown function DUF2806 VI35_20505 ecee89cf78e1a4170aff87dca68fc9b0 183 Gene3D G3DSA:3.40.1410.10 9 173 1.6E-35 T 17-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily VI35_20505 ecee89cf78e1a4170aff87dca68fc9b0 183 Hamap MF_01632 Chorismate pyruvate-lyase [ubiC]. 13 174 23.145 T 17-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 VI35_20505 ecee89cf78e1a4170aff87dca68fc9b0 183 Pfam PF04345 Chorismate lyase 11 171 4.4E-30 T 17-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 VI35_20505 ecee89cf78e1a4170aff87dca68fc9b0 183 SUPERFAMILY SSF64288 11 171 3.69E-32 T 17-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily VI35_05785 505027668173f5320c9feeb86c9b85e1 445 SUPERFAMILY SSF55909 3 445 3.14E-211 T 17-10-2018 VI35_05785 505027668173f5320c9feeb86c9b85e1 445 TIGRFAM TIGR03241 arg_catab_astB: succinylarginine dihydrolase 4 444 5.0E-225 T 17-10-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 VI35_05785 505027668173f5320c9feeb86c9b85e1 445 Pfam PF04996 Succinylarginine dihydrolase 3 444 7.4E-229 T 17-10-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 VI35_05785 505027668173f5320c9feeb86c9b85e1 445 Gene3D G3DSA:3.75.10.20 1 445 9.2E-210 T 17-10-2018 IPR037031 Succinylarginine dihydrolase superfamily GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 VI35_05785 505027668173f5320c9feeb86c9b85e1 445 Hamap MF_01172 N-succinylarginine dihydrolase [astB]. 1 445 60.835 T 17-10-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 VI35_18985 31ade93b6f36fbe5a04223a76fe4c996 175 PRINTS PR01837 MgtC/SapB protein signature 19 38 5.0E-31 T 17-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 VI35_18985 31ade93b6f36fbe5a04223a76fe4c996 175 PRINTS PR01837 MgtC/SapB protein signature 38 56 5.0E-31 T 17-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 VI35_18985 31ade93b6f36fbe5a04223a76fe4c996 175 PRINTS PR01837 MgtC/SapB protein signature 65 87 5.0E-31 T 17-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 VI35_18985 31ade93b6f36fbe5a04223a76fe4c996 175 PRINTS PR01837 MgtC/SapB protein signature 92 116 5.0E-31 T 17-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 VI35_18985 31ade93b6f36fbe5a04223a76fe4c996 175 Pfam PF02308 MgtC family 16 137 3.0E-28 T 17-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 VI35_09115 73f7cab4604c2e72095d17a0c19e6138 314 SUPERFAMILY SSF51430 1 312 6.94E-89 T 17-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily VI35_09115 73f7cab4604c2e72095d17a0c19e6138 314 Gene3D G3DSA:3.20.20.100 1 314 1.3E-103 T 17-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily VI35_09115 73f7cab4604c2e72095d17a0c19e6138 314 Pfam PF00248 Aldo/keto reductase family 16 310 2.7E-68 T 17-10-2018 IPR023210 NADP-dependent oxidoreductase domain VI35_04020 5029b897f3be46419631934d6c8d3634 197 Gene3D G3DSA:2.40.128.200 113 194 1.1E-16 T 17-10-2018 IPR036328 C-type lysozyme inhibitor superfamily VI35_04020 5029b897f3be46419631934d6c8d3634 197 SUPERFAMILY SSF141488 114 192 3.92E-15 T 17-10-2018 IPR036328 C-type lysozyme inhibitor superfamily VI35_04020 5029b897f3be46419631934d6c8d3634 197 Pfam PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme 118 186 1.4E-11 T 17-10-2018 IPR018660 C-type lysozyme inhibitor VI35_19680 da6efa27329f223f1791e1257094e95e 143 SUPERFAMILY SSF52833 23 98 6.91E-6 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_19680 da6efa27329f223f1791e1257094e95e 143 Pfam PF04214 Protein of unknown function, DUF 49 117 3.7E-32 T 17-10-2018 IPR007332 Protein of unknown function DUF411 VI35_07265 1517bfa6135556911eed5957003689da 159 ProSitePatterns PS00194 Thioredoxin family active site. 51 69 - T 17-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 VI35_07265 1517bfa6135556911eed5957003689da 159 Pfam PF00578 AhpC/TSA family 28 108 4.2E-11 T 17-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 VI35_07265 1517bfa6135556911eed5957003689da 159 Gene3D G3DSA:3.40.30.10 18 158 1.2E-27 T 17-10-2018 VI35_07265 1517bfa6135556911eed5957003689da 159 SUPERFAMILY SSF52833 27 148 5.18E-25 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_09280 16b8f6b32fa0082594e8800bce6ac2ee 177 SUPERFAMILY SSF51445 1 174 2.01E-27 T 17-10-2018 IPR017853 Glycoside hydrolase superfamily VI35_09280 16b8f6b32fa0082594e8800bce6ac2ee 177 Pfam PF07745 Glycosyl hydrolase family 53 1 173 8.8E-37 T 17-10-2018 IPR011683 Glycosyl hydrolase family 53 GO:0015926 VI35_09280 16b8f6b32fa0082594e8800bce6ac2ee 177 Gene3D G3DSA:3.20.20.80 1 177 1.7E-45 T 17-10-2018 VI35_17410 a7ab482fd2e5ed30a00b1400ce414d64 209 TIGRFAM TIGR04219 OMP_w_GlyGly: outer membrane protein 2 209 2.3E-58 T 17-10-2018 IPR026387 Outer membrane protein VI35_00410 e22c5b391847bbaeb61b581d2a172faf 400 Gene3D G3DSA:3.40.50.1950 1 184 6.2E-58 T 17-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 VI35_00410 e22c5b391847bbaeb61b581d2a172faf 400 SUPERFAMILY SSF102645 185 398 1.23E-78 T 17-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 VI35_00410 e22c5b391847bbaeb61b581d2a172faf 400 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 4 394 1.2E-149 T 17-10-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 VI35_00410 e22c5b391847bbaeb61b581d2a172faf 400 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 186 370 1.2E-74 T 17-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 VI35_00410 e22c5b391847bbaeb61b581d2a172faf 400 Gene3D G3DSA:3.40.50.10300 185 399 1.3E-80 T 17-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 VI35_00410 e22c5b391847bbaeb61b581d2a172faf 400 SUPERFAMILY SSF52507 3 179 2.75E-61 T 17-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 VI35_00410 e22c5b391847bbaeb61b581d2a172faf 400 Pfam PF02441 Flavoprotein 6 180 1.3E-46 T 17-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 VI35_12020 f81903c57b294f58842e9f4859a3ec94 206 Pfam PF03942 DTW domain 10 194 9.8E-46 T 17-10-2018 IPR005636 DTW VI35_12020 f81903c57b294f58842e9f4859a3ec94 206 SMART SM01144 8 202 2.1E-62 T 17-10-2018 IPR005636 DTW VI35_00905 7ed0f02180a262341312c51ff0ea0e82 177 Pfam PF00227 Proteasome subunit 2 171 5.8E-24 T 17-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 VI35_00905 7ed0f02180a262341312c51ff0ea0e82 177 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 1 172 40.548 T 17-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 VI35_00905 7ed0f02180a262341312c51ff0ea0e82 177 PIRSF PIRSF039093 1 175 4.1E-85 T 17-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 VI35_00905 7ed0f02180a262341312c51ff0ea0e82 177 Gene3D G3DSA:3.60.20.10 1 173 2.8E-66 T 17-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VI35_00905 7ed0f02180a262341312c51ff0ea0e82 177 SUPERFAMILY SSF56235 2 172 7.73E-58 T 17-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VI35_00905 7ed0f02180a262341312c51ff0ea0e82 177 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 2 171 2.0E-84 T 17-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 VI35_01490 de0af3186cb1742ca3380183fbb2876d 482 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 333 341 - T 17-10-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VI35_01490 de0af3186cb1742ca3380183fbb2876d 482 Pfam PF00199 Catalase 9 389 3.4E-193 T 17-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VI35_01490 de0af3186cb1742ca3380183fbb2876d 482 ProSitePatterns PS00438 Catalase proximal active site signature. 43 59 - T 17-10-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VI35_01490 de0af3186cb1742ca3380183fbb2876d 482 Pfam PF06628 Catalase-related immune-responsive 416 477 4.9E-20 T 17-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VI35_01490 de0af3186cb1742ca3380183fbb2876d 482 PIRSF PIRSF038928 1 482 5.0E-226 T 17-10-2018 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VI35_01490 de0af3186cb1742ca3380183fbb2876d 482 SUPERFAMILY SSF56634 4 477 2.22E-208 T 17-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VI35_01490 de0af3186cb1742ca3380183fbb2876d 482 PRINTS PR00067 Catalase signature 83 101 8.8E-76 T 17-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VI35_01490 de0af3186cb1742ca3380183fbb2876d 482 PRINTS PR00067 Catalase signature 288 315 8.8E-76 T 17-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VI35_01490 de0af3186cb1742ca3380183fbb2876d 482 PRINTS PR00067 Catalase signature 20 43 8.8E-76 T 17-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VI35_01490 de0af3186cb1742ca3380183fbb2876d 482 PRINTS PR00067 Catalase signature 104 121 8.8E-76 T 17-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VI35_01490 de0af3186cb1742ca3380183fbb2876d 482 PRINTS PR00067 Catalase signature 123 141 8.8E-76 T 17-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VI35_01490 de0af3186cb1742ca3380183fbb2876d 482 PRINTS PR00067 Catalase signature 320 346 8.8E-76 T 17-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VI35_01490 de0af3186cb1742ca3380183fbb2876d 482 Gene3D G3DSA:2.40.180.10 1 482 4.6E-224 T 17-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 VI35_01490 de0af3186cb1742ca3380183fbb2876d 482 SMART SM01060 7 392 4.7E-286 T 17-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VI35_00965 2ec6e80f863f292d384b0fb4a04ec9cb 337 SUPERFAMILY SSF51735 1 335 5.72E-96 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_00965 2ec6e80f863f292d384b0fb4a04ec9cb 337 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 323 3.4E-59 T 17-10-2018 IPR016040 NAD(P)-binding domain VI35_00965 2ec6e80f863f292d384b0fb4a04ec9cb 337 Gene3D G3DSA:3.90.25.10 193 328 1.7E-143 T 17-10-2018 VI35_00965 2ec6e80f863f292d384b0fb4a04ec9cb 337 Gene3D G3DSA:3.40.50.720 3 273 1.7E-143 T 17-10-2018 VI35_00965 2ec6e80f863f292d384b0fb4a04ec9cb 337 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 2 334 1.8E-138 T 17-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 VI35_07865 27b02ea3d5940403c4991b87aa4ad66d 169 Pfam PF14367 Domain of unknown function (DUF4411) 3 160 1.1E-47 T 17-10-2018 IPR016541 Uncharacterised conserved protein UCP008505 VI35_07865 27b02ea3d5940403c4991b87aa4ad66d 169 PIRSF PIRSF008505 1 160 1.7E-26 T 17-10-2018 IPR016541 Uncharacterised conserved protein UCP008505 VI35_12830 b9851def241f441c6731937e4e2161e7 179 Gene3D G3DSA:3.40.50.850 2 179 5.9E-51 T 17-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 VI35_12830 b9851def241f441c6731937e4e2161e7 179 Pfam PF00857 Isochorismatase family 8 156 1.3E-28 T 17-10-2018 IPR000868 Isochorismatase-like GO:0003824 VI35_12830 b9851def241f441c6731937e4e2161e7 179 SUPERFAMILY SSF52499 6 179 5.36E-47 T 17-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 VI35_17345 39d939c598d8e28a72144f178d66653c 228 Hamap MF_02202 Tol-Pal system protein TolQ [tolQ]. 5 225 42.766 T 17-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 VI35_17345 39d939c598d8e28a72144f178d66653c 228 TIGRFAM TIGR02796 tolQ: protein TolQ 6 220 2.5E-89 T 17-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 VI35_17345 39d939c598d8e28a72144f178d66653c 228 Pfam PF01618 MotA/TolQ/ExbB proton channel family 80 207 6.7E-44 T 17-10-2018 IPR002898 MotA/TolQ/ExbB proton channel VI35_17150 d54f906906f1794d7d67320a7d2d892a 187 Pfam PF10973 Protein of unknown function (DUF2799) 30 111 1.1E-22 T 17-10-2018 IPR021242 Protein of unknown function DUF2799 VI35_21210 b1a00eb761e11ae30a4dce437ff11a58 548 Pfam PF14849 YidC periplasmic domain 68 347 1.0E-90 T 17-10-2018 IPR038210 Membrane insertase YidC, periplasmic domain VI35_21210 b1a00eb761e11ae30a4dce437ff11a58 548 Pfam PF02096 60Kd inner membrane protein 358 537 1.5E-62 T 17-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VI35_21210 b1a00eb761e11ae30a4dce437ff11a58 548 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 4 539 25.494 T 17-10-2018 IPR019998 Membrane insertase YidC GO:0016021|GO:0032977 VI35_21210 b1a00eb761e11ae30a4dce437ff11a58 548 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 357 537 2.1E-72 T 17-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_21210 b1a00eb761e11ae30a4dce437ff11a58 548 PRINTS PR00701 60kDa inner membrane protein signature 2 23 2.1E-98 T 17-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VI35_21210 b1a00eb761e11ae30a4dce437ff11a58 548 PRINTS PR00701 60kDa inner membrane protein signature 164 184 2.1E-98 T 17-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VI35_21210 b1a00eb761e11ae30a4dce437ff11a58 548 PRINTS PR00701 60kDa inner membrane protein signature 221 239 2.1E-98 T 17-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VI35_21210 b1a00eb761e11ae30a4dce437ff11a58 548 PRINTS PR00701 60kDa inner membrane protein signature 503 526 2.1E-98 T 17-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VI35_21210 b1a00eb761e11ae30a4dce437ff11a58 548 PRINTS PR00701 60kDa inner membrane protein signature 73 94 2.1E-98 T 17-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VI35_21210 b1a00eb761e11ae30a4dce437ff11a58 548 PRINTS PR00701 60kDa inner membrane protein signature 419 442 2.1E-98 T 17-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VI35_21210 b1a00eb761e11ae30a4dce437ff11a58 548 PRINTS PR00701 60kDa inner membrane protein signature 254 269 2.1E-98 T 17-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VI35_21210 b1a00eb761e11ae30a4dce437ff11a58 548 PRINTS PR00701 60kDa inner membrane protein signature 466 488 2.1E-98 T 17-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VI35_21210 b1a00eb761e11ae30a4dce437ff11a58 548 PRINTS PR00701 60kDa inner membrane protein signature 328 348 2.1E-98 T 17-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VI35_21210 b1a00eb761e11ae30a4dce437ff11a58 548 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 3 355 8.4E-120 T 17-10-2018 IPR028053 Membrane insertase YidC, N-terminal VI35_21210 b1a00eb761e11ae30a4dce437ff11a58 548 PRINTS PR01900 YidC translocation/secretion protein signature 492 516 2.4E-25 T 17-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VI35_21210 b1a00eb761e11ae30a4dce437ff11a58 548 PRINTS PR01900 YidC translocation/secretion protein signature 472 487 2.4E-25 T 17-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VI35_21210 b1a00eb761e11ae30a4dce437ff11a58 548 PRINTS PR01900 YidC translocation/secretion protein signature 343 359 2.4E-25 T 17-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VI35_21210 b1a00eb761e11ae30a4dce437ff11a58 548 Gene3D G3DSA:2.70.98.90 63 337 1.3E-101 T 17-10-2018 IPR038221 YidC, periplasmic domain superfamily VI35_06760 acfdf53873145c6b4f85d537489cc0fa 265 SUPERFAMILY SSF56235 2 253 1.98E-50 T 17-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VI35_06760 acfdf53873145c6b4f85d537489cc0fa 265 Pfam PF13230 Glutamine amidotransferases class-II 1 255 3.8E-112 T 17-10-2018 IPR026869 Putative glutamine amidotransferase type 2 VI35_06760 acfdf53873145c6b4f85d537489cc0fa 265 Gene3D G3DSA:3.60.20.10 1 257 6.6E-99 T 17-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VI35_08750 a6765c76b4c710ea526487864eae3aa3 153 Pfam PF11143 Protein of unknown function (DUF2919) 4 148 1.2E-45 T 17-10-2018 IPR021318 Protein of unknown function DUF2919 VI35_19935 5a7f0f353c4a5c7370ff249b185d84b4 254 TIGRFAM TIGR01738 bioH: pimelyl-[acyl-carrier protein] methyl ester esterase 9 253 1.4E-92 T 17-10-2018 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519 VI35_19935 5a7f0f353c4a5c7370ff249b185d84b4 254 Hamap MF_01260 Pimeloyl-[acyl-carrier protein] methyl ester esterase [bioH]. 3 254 44.416 T 17-10-2018 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519 VI35_19935 5a7f0f353c4a5c7370ff249b185d84b4 254 SUPERFAMILY SSF53474 3 254 2.95E-53 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_19935 5a7f0f353c4a5c7370ff249b185d84b4 254 Pfam PF00561 alpha/beta hydrolase fold 14 242 9.9E-22 T 17-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VI35_19935 5a7f0f353c4a5c7370ff249b185d84b4 254 Gene3D G3DSA:3.40.50.1820 2 254 6.5E-67 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_19935 5a7f0f353c4a5c7370ff249b185d84b4 254 PRINTS PR00111 Alpha/beta hydrolase fold signature 92 105 1.1E-9 T 17-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VI35_19935 5a7f0f353c4a5c7370ff249b185d84b4 254 PRINTS PR00111 Alpha/beta hydrolase fold signature 37 52 1.1E-9 T 17-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VI35_19935 5a7f0f353c4a5c7370ff249b185d84b4 254 PRINTS PR00111 Alpha/beta hydrolase fold signature 199 213 1.1E-9 T 17-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VI35_19935 5a7f0f353c4a5c7370ff249b185d84b4 254 PRINTS PR00111 Alpha/beta hydrolase fold signature 78 91 1.1E-9 T 17-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VI35_16830 961a89f2071be5a46d6abfbdf53c3c53 236 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_16830 961a89f2071be5a46d6abfbdf53c3c53 236 SMART SM00382 24 207 1.9E-19 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_16830 961a89f2071be5a46d6abfbdf53c3c53 236 Gene3D G3DSA:3.40.50.300 2 232 4.7E-63 T 17-10-2018 VI35_16830 961a89f2071be5a46d6abfbdf53c3c53 236 SUPERFAMILY SSF52540 1 218 2.93E-66 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_16830 961a89f2071be5a46d6abfbdf53c3c53 236 Pfam PF00005 ABC transporter 19 157 8.4E-33 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_16830 961a89f2071be5a46d6abfbdf53c3c53 236 TIGRFAM TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein 4 213 1.2E-80 T 17-10-2018 IPR005968 Thiamine ABC transporter, ATP-binding protein ThiQ GO:0005524|GO:0016021|GO:0042626|GO:0071934 VI35_15245 5004d27dc4b3d51ff39068b0e1442e7b 134 SUPERFAMILY SSF69118 4 127 2.64E-29 T 17-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 VI35_15245 5004d27dc4b3d51ff39068b0e1442e7b 134 Pfam PF02627 Carboxymuconolactone decarboxylase family 36 120 1.3E-17 T 17-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 VI35_15245 5004d27dc4b3d51ff39068b0e1442e7b 134 Gene3D G3DSA:1.20.1290.10 2 127 1.4E-32 T 17-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 VI35_18855 146faea9e6d6e3b9c2e26b79f01f23ef 307 Pfam PF01040 UbiA prenyltransferase family 29 261 1.7E-38 T 17-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 VI35_18855 146faea9e6d6e3b9c2e26b79f01f23ef 307 PIRSF PIRSF005355 4 307 1.4E-82 T 17-10-2018 IPR026046 UbiA prenyltransferase domain containing protein 1 GO:0004659 Reactome: R-HSA-6806664 VI35_18855 146faea9e6d6e3b9c2e26b79f01f23ef 307 TIGRFAM TIGR00751 menA: 1,4-dihydroxy-2-naphthoate octaprenyltransferase 19 302 1.8E-92 T 17-10-2018 VI35_18855 146faea9e6d6e3b9c2e26b79f01f23ef 307 Hamap MF_01937 1,4-dihydroxy-2-naphthoate octaprenyltransferase [menA]. 10 304 20.793 T 17-10-2018 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase GO:0009234|GO:0016021|GO:0046428 KEGG: 00130+2.5.1.74|MetaCyc: PWY-5839|MetaCyc: PWY-5851|MetaCyc: PWY-5852|MetaCyc: PWY-5853|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 VI35_08425 8fae6f3a62219c0b20c6ccfbecab05dd 332 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 18 318 1.0E-107 T 17-10-2018 IPR010732 Type VI secretion, TssG-like VI35_08425 8fae6f3a62219c0b20c6ccfbecab05dd 332 Pfam PF06996 Type VI secretion, TssG 18 318 3.4E-94 T 17-10-2018 IPR010732 Type VI secretion, TssG-like VI35_16055 bbab8b8d4a8d0d70ecb487d68885f3b2 501 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 8 459 4.5E-94 T 17-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 VI35_16055 bbab8b8d4a8d0d70ecb487d68885f3b2 501 Pfam PF02447 GntP family permease 7 459 3.2E-141 T 17-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 VI35_16055 bbab8b8d4a8d0d70ecb487d68885f3b2 501 PIRSF PIRSF002746 2 462 6.6E-148 T 17-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 VI35_13180 f1a258657384ab62e4adf7fea6bd01a5 80 SUPERFAMILY SSF46785 2 70 2.85E-18 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_13180 f1a258657384ab62e4adf7fea6bd01a5 80 Pfam PF09012 FeoC like transcriptional regulator 2 67 1.8E-22 T 17-10-2018 IPR015102 Transcriptional regulator HTH-type, FeoC VI35_10380 fa1f296343e6dba929c8ad819edec996 418 Gene3D G3DSA:2.40.160.60 22 418 4.7E-126 T 17-10-2018 VI35_10380 fa1f296343e6dba929c8ad819edec996 418 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 13 418 7.7E-112 T 17-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) VI35_10380 fa1f296343e6dba929c8ad819edec996 418 SUPERFAMILY SSF56935 22 418 2.2E-94 T 17-10-2018 VI35_09895 a7079b94b0af0348128213f9d7921d13 144 Pfam PF03733 Inner membrane component domain 79 129 1.4E-17 T 17-10-2018 IPR005185 Inner membrane component domain VI35_09895 a7079b94b0af0348128213f9d7921d13 144 Pfam PF03733 Inner membrane component domain 7 57 4.4E-14 T 17-10-2018 IPR005185 Inner membrane component domain VI35_09895 a7079b94b0af0348128213f9d7921d13 144 PIRSF PIRSF028777 4 141 8.2E-49 T 17-10-2018 IPR031308 Uncharacterised conserved protein UCP028777 VI35_13870 8bc10e1df3fdda66f576e3518b25ab7e 213 SUPERFAMILY SSF51161 4 194 9.43E-35 T 17-10-2018 IPR011004 Trimeric LpxA-like superfamily VI35_13870 8bc10e1df3fdda66f576e3518b25ab7e 213 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 105 138 1.7E-5 T 17-10-2018 IPR001451 Hexapeptide repeat VI35_13870 8bc10e1df3fdda66f576e3518b25ab7e 213 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 158 193 7.3E-7 T 17-10-2018 IPR001451 Hexapeptide repeat VI35_13870 8bc10e1df3fdda66f576e3518b25ab7e 213 Gene3D G3DSA:2.160.10.10 93 200 1.1E-24 T 17-10-2018 VI35_13870 8bc10e1df3fdda66f576e3518b25ab7e 213 Gene3D G3DSA:3.40.50.20 1 92 1.7E-11 T 17-10-2018 VI35_13870 8bc10e1df3fdda66f576e3518b25ab7e 213 TIGRFAM TIGR03570 NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family 5 202 3.1E-57 T 17-10-2018 IPR020019 Sialic acid O-acyltransferase NeuD-like VI35_03560 35b86fe5f63a3dbfd5edb01e0720a60e 415 Pfam PF02687 FtsX-like permease family 313 406 3.1E-10 T 17-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 VI35_03560 35b86fe5f63a3dbfd5edb01e0720a60e 415 Pfam PF12704 MacB-like periplasmic core domain 18 204 5.1E-10 T 17-10-2018 IPR025857 MacB-like periplasmic core domain VI35_07660 c91b163f864d97bec93d8b17e6433a31 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 306 5.6E-37 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_07660 c91b163f864d97bec93d8b17e6433a31 306 Gene3D G3DSA:1.10.3720.10 85 301 9.5E-19 T 17-10-2018 IPR035906 MetI-like superfamily VI35_07660 c91b163f864d97bec93d8b17e6433a31 306 SUPERFAMILY SSF161098 88 290 6.43E-18 T 17-10-2018 IPR035906 MetI-like superfamily VI35_12540 a2489083ef7eb138a0b45f2726ee69b7 209 SUPERFAMILY SSF51306 103 202 9.24E-12 T 17-10-2018 IPR036286 LexA/Signal peptidase-like superfamily VI35_12540 a2489083ef7eb138a0b45f2726ee69b7 209 Gene3D G3DSA:1.10.260.40 22 74 9.2E-10 T 17-10-2018 VI35_12540 a2489083ef7eb138a0b45f2726ee69b7 209 Gene3D G3DSA:2.10.109.10 95 207 7.4E-6 T 17-10-2018 VI35_12540 a2489083ef7eb138a0b45f2726ee69b7 209 SMART SM00530 10 67 3.0E-5 T 17-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VI35_12540 a2489083ef7eb138a0b45f2726ee69b7 209 SUPERFAMILY SSF47413 8 72 4.12E-9 T 17-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VI35_12540 a2489083ef7eb138a0b45f2726ee69b7 209 Pfam PF00717 Peptidase S24-like 123 189 1.7E-4 T 17-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C VI35_12540 a2489083ef7eb138a0b45f2726ee69b7 209 Pfam PF01381 Helix-turn-helix 25 67 1.5E-9 T 17-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VI35_05800 73ff78186db330c2249606e40355a77a 517 Pfam PF08447 PAS fold 32 115 2.8E-18 T 17-10-2018 IPR013655 PAS fold-3 GO:0005515 VI35_05800 73ff78186db330c2249606e40355a77a 517 Gene3D G3DSA:3.30.450.20 19 145 1.6E-28 T 17-10-2018 VI35_05800 73ff78186db330c2249606e40355a77a 517 SUPERFAMILY SSF55785 22 115 3.32E-29 T 17-10-2018 IPR035965 PAS domain superfamily VI35_05800 73ff78186db330c2249606e40355a77a 517 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 277 306 1.3E-20 T 17-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VI35_05800 73ff78186db330c2249606e40355a77a 517 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 383 412 1.3E-20 T 17-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VI35_05800 73ff78186db330c2249606e40355a77a 517 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 354 381 1.3E-20 T 17-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VI35_05800 73ff78186db330c2249606e40355a77a 517 Gene3D G3DSA:1.10.287.950 227 517 2.6E-63 T 17-10-2018 VI35_05800 73ff78186db330c2249606e40355a77a 517 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 23 114 1.7E-15 T 17-10-2018 IPR000014 PAS domain VI35_05800 73ff78186db330c2249606e40355a77a 517 SMART SM00091 3 75 0.0065 T 17-10-2018 IPR000014 PAS domain VI35_05800 73ff78186db330c2249606e40355a77a 517 SMART SM00283 256 517 6.1E-48 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_05800 73ff78186db330c2249606e40355a77a 517 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 303 483 2.4E-38 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_05800 73ff78186db330c2249606e40355a77a 517 SUPERFAMILY SSF58104 262 516 5.58E-69 T 17-10-2018 VI35_05475 78d9736d3a031e9185172b267029cbf3 313 Gene3D G3DSA:1.20.1300.10 101 311 1.7E-7 T 17-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_05475 78d9736d3a031e9185172b267029cbf3 313 SUPERFAMILY SSF81343 118 308 4.32E-11 T 17-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_13775 06e4d85c7792fe3c1faf6801e64c0665 297 SUPERFAMILY SSF56596 14 294 1.83E-61 T 17-10-2018 IPR036384 Replication terminator Tus superfamily GO:0003677|GO:0005737|GO:0006274 VI35_13775 06e4d85c7792fe3c1faf6801e64c0665 297 Gene3D G3DSA:3.50.14.10 16 275 4.0E-62 T 17-10-2018 IPR036381 Replication terminator Tus, domain 1 GO:0003677|GO:0005737|GO:0006274 VI35_13775 06e4d85c7792fe3c1faf6801e64c0665 297 Pfam PF05472 DNA replication terminus site-binding protein (Ter protein) 10 293 1.8E-93 T 17-10-2018 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 VI35_13775 06e4d85c7792fe3c1faf6801e64c0665 297 Gene3D G3DSA:3.30.54.10 168 293 4.0E-62 T 17-10-2018 VI35_17845 294a85262b9e1b608c26c38d8228257b 135 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 28 9.1E-9 T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_17845 294a85262b9e1b608c26c38d8228257b 135 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_17845 294a85262b9e1b608c26c38d8228257b 135 Pfam PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor 29 111 2.6E-17 T 17-10-2018 IPR031982 Type IV minor pilin ComP VI35_17845 294a85262b9e1b608c26c38d8228257b 135 SUPERFAMILY SSF54523 8 122 1.41E-21 T 17-10-2018 VI35_17845 294a85262b9e1b608c26c38d8228257b 135 Gene3D G3DSA:3.30.700.10 8 135 9.8E-20 T 17-10-2018 VI35_17845 294a85262b9e1b608c26c38d8228257b 135 Pfam PF07963 Prokaryotic N-terminal methylation motif 6 28 3.4E-8 T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_02365 fbe0365ca1e913111e6afa4bdd2ae3ef 629 SUPERFAMILY SSF51230 105 194 2.09E-21 T 17-10-2018 IPR011053 Single hybrid motif VI35_02365 fbe0365ca1e913111e6afa4bdd2ae3ef 629 TIGRFAM TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase 188 629 8.0E-206 T 17-10-2018 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex GO:0004742|GO:0006096|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 VI35_02365 fbe0365ca1e913111e6afa4bdd2ae3ef 629 Pfam PF00364 Biotin-requiring enzyme 208 277 3.2E-22 T 17-10-2018 IPR000089 Biotin/lipoyl attachment VI35_02365 fbe0365ca1e913111e6afa4bdd2ae3ef 629 Pfam PF00364 Biotin-requiring enzyme 3 73 2.0E-19 T 17-10-2018 IPR000089 Biotin/lipoyl attachment VI35_02365 fbe0365ca1e913111e6afa4bdd2ae3ef 629 Pfam PF00364 Biotin-requiring enzyme 106 175 1.4E-18 T 17-10-2018 IPR000089 Biotin/lipoyl attachment VI35_02365 fbe0365ca1e913111e6afa4bdd2ae3ef 629 Gene3D G3DSA:2.40.50.100 104 181 7.7E-19 T 17-10-2018 VI35_02365 fbe0365ca1e913111e6afa4bdd2ae3ef 629 Gene3D G3DSA:2.40.50.100 1 80 1.7E-20 T 17-10-2018 VI35_02365 fbe0365ca1e913111e6afa4bdd2ae3ef 629 Gene3D G3DSA:2.40.50.100 206 283 4.8E-22 T 17-10-2018 VI35_02365 fbe0365ca1e913111e6afa4bdd2ae3ef 629 SUPERFAMILY SSF51230 206 296 1.31E-23 T 17-10-2018 IPR011053 Single hybrid motif VI35_02365 fbe0365ca1e913111e6afa4bdd2ae3ef 629 SUPERFAMILY SSF51230 2 92 1.06E-22 T 17-10-2018 IPR011053 Single hybrid motif VI35_02365 fbe0365ca1e913111e6afa4bdd2ae3ef 629 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 229 258 - T 17-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 VI35_02365 fbe0365ca1e913111e6afa4bdd2ae3ef 629 SUPERFAMILY SSF47005 320 365 2.35E-13 T 17-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 VI35_02365 fbe0365ca1e913111e6afa4bdd2ae3ef 629 Gene3D G3DSA:3.30.559.10 382 629 2.0E-95 T 17-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 VI35_02365 fbe0365ca1e913111e6afa4bdd2ae3ef 629 SUPERFAMILY SSF52777 387 628 3.47E-78 T 17-10-2018 VI35_02365 fbe0365ca1e913111e6afa4bdd2ae3ef 629 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 127 156 - T 17-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 VI35_02365 fbe0365ca1e913111e6afa4bdd2ae3ef 629 Pfam PF02817 e3 binding domain 326 361 4.8E-16 T 17-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 VI35_02365 fbe0365ca1e913111e6afa4bdd2ae3ef 629 Gene3D G3DSA:4.10.320.10 326 371 1.1E-21 T 17-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 VI35_02365 fbe0365ca1e913111e6afa4bdd2ae3ef 629 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 399 628 9.0E-77 T 17-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 VI35_02365 fbe0365ca1e913111e6afa4bdd2ae3ef 629 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 25 54 - T 17-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 VI35_14410 6cbf32ffd05c362f9b2e1849b2293687 363 Pfam PF05990 Alpha/beta hydrolase of unknown function (DUF900) 91 167 4.7E-12 T 17-10-2018 IPR010297 Protein of unknown function DUF900, hydrolase-like VI35_14410 6cbf32ffd05c362f9b2e1849b2293687 363 Pfam PF05990 Alpha/beta hydrolase of unknown function (DUF900) 212 316 1.0E-9 T 17-10-2018 IPR010297 Protein of unknown function DUF900, hydrolase-like VI35_12910 520fd5465964c20dd1d5e54b762f0c52 193 Gene3D G3DSA:3.40.50.1390 2 151 1.6E-39 T 17-10-2018 VI35_12910 520fd5465964c20dd1d5e54b762f0c52 193 SMART SM00857 4 142 6.0E-52 T 17-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 VI35_12910 520fd5465964c20dd1d5e54b762f0c52 193 ProSitePatterns PS00398 Site-specific recombinases signature 2. 61 73 - T 17-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 VI35_12910 520fd5465964c20dd1d5e54b762f0c52 193 Pfam PF00239 Resolvase, N terminal domain 4 141 3.3E-42 T 17-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 VI35_12910 520fd5465964c20dd1d5e54b762f0c52 193 SUPERFAMILY SSF53041 3 141 4.19E-40 T 17-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 VI35_12910 520fd5465964c20dd1d5e54b762f0c52 193 ProSitePatterns PS00397 Site-specific recombinases active site. 7 15 - T 17-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 VI35_02720 f9ecb892b2a8118ccfad677486480327 423 Pfam PF04403 Paraquat-inducible protein A 56 208 4.4E-41 T 17-10-2018 IPR007498 Intermembrane transport protein PqiA-like VI35_02720 f9ecb892b2a8118ccfad677486480327 423 Pfam PF04403 Paraquat-inducible protein A 260 415 5.7E-57 T 17-10-2018 IPR007498 Intermembrane transport protein PqiA-like VI35_02720 f9ecb892b2a8118ccfad677486480327 423 TIGRFAM TIGR00155 pqiA_fam: integral membrane protein, PqiA family 14 414 4.8E-106 T 17-10-2018 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type VI35_00455 66855f513fb24c5fb7e7bba13a86abd8 258 Gene3D G3DSA:3.90.550.10 1 180 2.1E-24 T 17-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VI35_00455 66855f513fb24c5fb7e7bba13a86abd8 258 Pfam PF00535 Glycosyl transferase family 2 9 131 2.0E-17 T 17-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 VI35_00455 66855f513fb24c5fb7e7bba13a86abd8 258 SUPERFAMILY SSF53448 3 141 8.23E-26 T 17-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VI35_08355 a3bc8c52de3c5ceb710b0680b6800ef2 269 Gene3D G3DSA:2.180.10.10 37 157 5.4E-34 T 17-10-2018 VI35_08355 a3bc8c52de3c5ceb710b0680b6800ef2 269 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 81 157 3.9E-30 T 17-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 VI35_08355 a3bc8c52de3c5ceb710b0680b6800ef2 269 Pfam PF15657 HNH/Endo VII superfamily nuclease toxins 196 256 4.5E-10 T 17-10-2018 IPR028048 HNH/Endo VII superfamily nuclease toxins VI35_08355 a3bc8c52de3c5ceb710b0680b6800ef2 269 Pfam PF03527 RHS protein 54 90 1.4E-13 T 17-10-2018 IPR001826 RHS protein VI35_08355 a3bc8c52de3c5ceb710b0680b6800ef2 269 PRINTS PR00394 RHS protein signature 102 122 7.6E-18 T 17-10-2018 IPR001826 RHS protein VI35_08355 a3bc8c52de3c5ceb710b0680b6800ef2 269 PRINTS PR00394 RHS protein signature 48 68 7.6E-18 T 17-10-2018 IPR001826 RHS protein VI35_08355 a3bc8c52de3c5ceb710b0680b6800ef2 269 PRINTS PR00394 RHS protein signature 125 144 7.6E-18 T 17-10-2018 IPR001826 RHS protein VI35_02255 e1dddece17d78223d1b1d583c48cefaf 484 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 19 476 43.72 T 17-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VI35_02255 e1dddece17d78223d1b1d583c48cefaf 484 Pfam PF08245 Mur ligase middle domain 124 304 2.0E-28 T 17-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 VI35_02255 e1dddece17d78223d1b1d583c48cefaf 484 Gene3D G3DSA:3.40.50.720 20 107 2.5E-33 T 17-10-2018 VI35_02255 e1dddece17d78223d1b1d583c48cefaf 484 SUPERFAMILY SSF53623 105 322 1.83E-73 T 17-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 VI35_02255 e1dddece17d78223d1b1d583c48cefaf 484 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 21 469 1.9E-177 T 17-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VI35_02255 e1dddece17d78223d1b1d583c48cefaf 484 Gene3D G3DSA:3.40.1190.10 108 321 1.7E-80 T 17-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 VI35_02255 e1dddece17d78223d1b1d583c48cefaf 484 SUPERFAMILY SSF51984 14 106 9.68E-30 T 17-10-2018 VI35_02255 e1dddece17d78223d1b1d583c48cefaf 484 Pfam PF02875 Mur ligase family, glutamate ligase domain 324 414 5.9E-21 T 17-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 VI35_02255 e1dddece17d78223d1b1d583c48cefaf 484 Gene3D G3DSA:3.90.190.20 322 481 3.8E-48 T 17-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 VI35_02255 e1dddece17d78223d1b1d583c48cefaf 484 SUPERFAMILY SSF53244 323 470 7.78E-48 T 17-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 VI35_02255 e1dddece17d78223d1b1d583c48cefaf 484 Pfam PF01225 Mur ligase family, catalytic domain 21 118 1.8E-29 T 17-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 VI35_15735 ea4328816215200058eb41e04b55ffe6 447 Pfam PF11973 NQRA C-terminal domain 262 311 1.4E-20 T 17-10-2018 IPR022615 Na(+)-translocating NADH-quinone reductase subunit A, C-terminal domain GO:0016655|GO:0055114 VI35_15735 ea4328816215200058eb41e04b55ffe6 447 TIGRFAM TIGR01936 nqrA: NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit 2 446 4.4E-185 T 17-10-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 VI35_15735 ea4328816215200058eb41e04b55ffe6 447 Pfam PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) 1 257 5.8E-111 T 17-10-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 VI35_15735 ea4328816215200058eb41e04b55ffe6 447 Hamap MF_00425 Na(+)-translocating NADH-quinone reductase subunit A [nqrA]. 1 447 45.567 T 17-10-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 VI35_13250 d3bc9a42d5bc217a9cf7bad2d4c26848 590 Pfam PF01935 Domain of unknown function DUF87 127 369 2.3E-16 T 17-10-2018 IPR002789 Helicase HerA, central domain VI35_13250 d3bc9a42d5bc217a9cf7bad2d4c26848 590 Gene3D G3DSA:3.40.50.300 367 585 1.0E-42 T 17-10-2018 VI35_13250 d3bc9a42d5bc217a9cf7bad2d4c26848 590 Gene3D G3DSA:3.40.50.300 110 265 4.0E-20 T 17-10-2018 VI35_13250 d3bc9a42d5bc217a9cf7bad2d4c26848 590 SUPERFAMILY SSF52540 118 569 1.71E-29 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_19500 5fd63f79088ed5b599cea5330b545f7f 316 SUPERFAMILY SSF53686 21 304 5.19E-58 T 17-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme VI35_19500 5fd63f79088ed5b599cea5330b545f7f 316 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 28 296 6.0E-24 T 17-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme VI35_19500 5fd63f79088ed5b599cea5330b545f7f 316 PIRSF PIRSF006278 7 313 9.3E-81 T 17-10-2018 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase VI35_19500 5fd63f79088ed5b599cea5330b545f7f 316 Gene3D G3DSA:3.40.50.1100 21 301 1.7E-63 T 17-10-2018 VI35_19500 5fd63f79088ed5b599cea5330b545f7f 316 Gene3D G3DSA:3.40.50.1100 52 153 1.7E-63 T 17-10-2018 VI35_03150 b2d442a9e0fb8d85371497d3ccb25c4a 244 SUPERFAMILY SSF51735 2 243 3.21E-76 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_03150 b2d442a9e0fb8d85371497d3ccb25c4a 244 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 17-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 VI35_03150 b2d442a9e0fb8d85371497d3ccb25c4a 244 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 206 1.7E-4 T 17-10-2018 VI35_03150 b2d442a9e0fb8d85371497d3ccb25c4a 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 3.5E-9 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_03150 b2d442a9e0fb8d85371497d3ccb25c4a 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 3.5E-9 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_03150 b2d442a9e0fb8d85371497d3ccb25c4a 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 3.5E-9 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_03150 b2d442a9e0fb8d85371497d3ccb25c4a 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 1.1E-38 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_03150 b2d442a9e0fb8d85371497d3ccb25c4a 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 1.1E-38 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_03150 b2d442a9e0fb8d85371497d3ccb25c4a 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 1.1E-38 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_03150 b2d442a9e0fb8d85371497d3ccb25c4a 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 1.1E-38 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_03150 b2d442a9e0fb8d85371497d3ccb25c4a 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 1.1E-38 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_03150 b2d442a9e0fb8d85371497d3ccb25c4a 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 1.1E-38 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_03150 b2d442a9e0fb8d85371497d3ccb25c4a 244 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 243 4.3E-60 T 17-10-2018 VI35_03150 b2d442a9e0fb8d85371497d3ccb25c4a 244 Gene3D G3DSA:3.40.50.720 1 244 3.2E-78 T 17-10-2018 VI35_19195 c6ab10173da0cebc4cd5e5079d32ebd6 210 SUPERFAMILY SSF51161 13 206 9.15E-49 T 17-10-2018 IPR011004 Trimeric LpxA-like superfamily VI35_19195 c6ab10173da0cebc4cd5e5079d32ebd6 210 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 115 150 1.7E-9 T 17-10-2018 IPR001451 Hexapeptide repeat VI35_19195 c6ab10173da0cebc4cd5e5079d32ebd6 210 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 124 152 - T 17-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 VI35_19195 c6ab10173da0cebc4cd5e5079d32ebd6 210 Gene3D G3DSA:2.160.10.10 1 209 2.3E-75 T 17-10-2018 VI35_02475 5f99589b9543f0220fd36ab4907fa5f2 199 Pfam PF06930 Protein of unknown function (DUF1282) 9 179 2.4E-42 T 17-10-2018 IPR009698 Protein of unknown function DUF1282 VI35_14450 31e8b2a181f5b4b2b30b8f88abab40cc 302 Pfam PF00849 RNA pseudouridylate synthase 54 198 2.7E-16 T 17-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_14450 31e8b2a181f5b4b2b30b8f88abab40cc 302 SUPERFAMILY SSF55120 51 233 1.47E-44 T 17-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_14450 31e8b2a181f5b4b2b30b8f88abab40cc 302 Gene3D G3DSA:3.30.70.1560 118 217 3.0E-42 T 17-10-2018 VI35_14450 31e8b2a181f5b4b2b30b8f88abab40cc 302 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 58 227 5.7E-56 T 17-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 VI35_14450 31e8b2a181f5b4b2b30b8f88abab40cc 302 Gene3D G3DSA:3.30.70.580 42 117 1.1E-27 T 17-10-2018 VI35_14450 31e8b2a181f5b4b2b30b8f88abab40cc 302 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 89 103 - T 17-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 VI35_10945 914213794b8c2cf524b9829f26c96735 671 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 242 322 1.3E-14 T 17-10-2018 IPR001478 PDZ domain GO:0005515 VI35_10945 914213794b8c2cf524b9829f26c96735 671 SUPERFAMILY SSF52096 172 534 1.13E-65 T 17-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VI35_10945 914213794b8c2cf524b9829f26c96735 671 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 198 550 3.0E-108 T 17-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 VI35_10945 914213794b8c2cf524b9829f26c96735 671 Gene3D G3DSA:2.30.42.10 238 324 6.3E-14 T 17-10-2018 VI35_10945 914213794b8c2cf524b9829f26c96735 671 Gene3D G3DSA:3.90.226.10 326 547 2.5E-53 T 17-10-2018 VI35_10945 914213794b8c2cf524b9829f26c96735 671 SMART SM00228 248 325 1.8E-11 T 17-10-2018 IPR001478 PDZ domain GO:0005515 VI35_10945 914213794b8c2cf524b9829f26c96735 671 SUPERFAMILY SSF50156 245 328 2.8E-12 T 17-10-2018 IPR036034 PDZ superfamily GO:0005515 VI35_10945 914213794b8c2cf524b9829f26c96735 671 SMART SM00245 329 530 7.5E-61 T 17-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 VI35_10945 914213794b8c2cf524b9829f26c96735 671 Pfam PF03572 Peptidase family S41 359 528 1.3E-48 T 17-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 VI35_10945 914213794b8c2cf524b9829f26c96735 671 Pfam PF11818 C-terminal domain of tail specific protease (DUF3340) 535 665 2.1E-38 T 17-10-2018 IPR020992 Tail specific protease, C-terminal VI35_11805 a3af222785ffbdefd5450d6f5b292605 195 SUPERFAMILY SSF52833 49 172 1.74E-29 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_11805 a3af222785ffbdefd5450d6f5b292605 195 Gene3D G3DSA:3.40.30.10 26 178 5.2E-29 T 17-10-2018 VI35_11805 a3af222785ffbdefd5450d6f5b292605 195 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 8 169 1.1E-46 T 17-10-2018 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 VI35_11805 a3af222785ffbdefd5450d6f5b292605 195 Pfam PF08534 Redoxin 37 152 1.0E-8 T 17-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 VI35_18320 63e6c6bed12c30eb981619e071ed8d6d 402 SUPERFAMILY SSF143856 115 231 2.48E-50 T 17-10-2018 IPR024052 Phosphopentomutase DeoB cap domain superfamily GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 VI35_18320 63e6c6bed12c30eb981619e071ed8d6d 402 SUPERFAMILY SSF53649 1 402 2.49E-74 T 17-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VI35_18320 63e6c6bed12c30eb981619e071ed8d6d 402 Hamap MF_00740 Phosphopentomutase [deoB]. 1 402 54.663 T 17-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 VI35_18320 63e6c6bed12c30eb981619e071ed8d6d 402 Gene3D G3DSA:3.30.70.1250 113 234 1.6E-154 T 17-10-2018 IPR024052 Phosphopentomutase DeoB cap domain superfamily GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 VI35_18320 63e6c6bed12c30eb981619e071ed8d6d 402 PIRSF PIRSF001491 1 402 3.7E-161 T 17-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 VI35_18320 63e6c6bed12c30eb981619e071ed8d6d 402 Gene3D G3DSA:3.40.720.10 3 402 1.6E-154 T 17-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VI35_18320 63e6c6bed12c30eb981619e071ed8d6d 402 TIGRFAM TIGR01696 deoB: phosphopentomutase 3 400 6.8E-174 T 17-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 VI35_18320 63e6c6bed12c30eb981619e071ed8d6d 402 Pfam PF01676 Metalloenzyme superfamily 2 393 4.2E-41 T 17-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 VI35_19465 d0249a6fc8dc34b0f6b4289d33474765 378 SUPERFAMILY SSF48452 198 355 6.9E-17 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_19465 d0249a6fc8dc34b0f6b4289d33474765 378 Pfam PF14559 Tetratricopeptide repeat 237 297 9.3E-8 T 17-10-2018 VI35_19465 d0249a6fc8dc34b0f6b4289d33474765 378 Gene3D G3DSA:1.25.40.10 288 375 4.8E-7 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_19465 d0249a6fc8dc34b0f6b4289d33474765 378 Pfam PF13432 Tetratricopeptide repeat 301 355 3.1E-6 T 17-10-2018 VI35_19465 d0249a6fc8dc34b0f6b4289d33474765 378 Gene3D G3DSA:1.25.40.10 156 287 1.0E-12 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_16290 a4647ad5c50fe91e620d022da9de7193 322 SUPERFAMILY SSF50998 34 321 2.12E-51 T 17-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily VI35_16290 a4647ad5c50fe91e620d022da9de7193 322 SMART SM00320 21 60 470.0 T 17-10-2018 IPR001680 WD40 repeat GO:0005515 VI35_16290 a4647ad5c50fe91e620d022da9de7193 322 SMART SM00320 63 104 310.0 T 17-10-2018 IPR001680 WD40 repeat GO:0005515 VI35_16290 a4647ad5c50fe91e620d022da9de7193 322 SMART SM00320 230 271 4.5 T 17-10-2018 IPR001680 WD40 repeat GO:0005515 VI35_16290 a4647ad5c50fe91e620d022da9de7193 322 SMART SM00320 274 320 5.2 T 17-10-2018 IPR001680 WD40 repeat GO:0005515 VI35_16290 a4647ad5c50fe91e620d022da9de7193 322 SMART SM00320 190 227 2.6 T 17-10-2018 IPR001680 WD40 repeat GO:0005515 VI35_16290 a4647ad5c50fe91e620d022da9de7193 322 SMART SM00320 149 187 9.3E-6 T 17-10-2018 IPR001680 WD40 repeat GO:0005515 VI35_16290 a4647ad5c50fe91e620d022da9de7193 322 SMART SM00320 107 146 76.0 T 17-10-2018 IPR001680 WD40 repeat GO:0005515 VI35_16290 a4647ad5c50fe91e620d022da9de7193 322 Gene3D G3DSA:2.130.10.10 13 233 2.3E-34 T 17-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 VI35_16290 a4647ad5c50fe91e620d022da9de7193 322 Pfam PF13360 PQQ-like domain 41 232 1.0E-4 T 17-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat VI35_16290 a4647ad5c50fe91e620d022da9de7193 322 Gene3D G3DSA:2.130.10.10 234 322 1.2E-6 T 17-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 VI35_16290 a4647ad5c50fe91e620d022da9de7193 322 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 174 188 - T 17-10-2018 IPR019775 WD40 repeat, conserved site VI35_01960 80683f06bec1ab99fe9a370418e225ee 196 Gene3D G3DSA:3.40.50.10490 1 196 4.3E-60 T 17-10-2018 VI35_01960 80683f06bec1ab99fe9a370418e225ee 196 Pfam PF13580 SIS domain 8 143 3.2E-29 T 17-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 VI35_01960 80683f06bec1ab99fe9a370418e225ee 196 SUPERFAMILY SSF53697 2 191 4.45E-46 T 17-10-2018 VI35_08980 fdf74bd50b61d73e8395a4a7232c3326 179 Pfam PF10721 Protein of unknown function (DUF2514) 28 176 1.2E-35 T 17-10-2018 IPR019659 Protein of unknown function DUF2514 VI35_17850 5d3e76cab5e446b40c2981d6cbe6d3c0 311 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 1 286 38.799 T 17-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 VI35_17850 5d3e76cab5e446b40c2981d6cbe6d3c0 311 Gene3D G3DSA:3.40.50.11270 12 96 5.9E-113 T 17-10-2018 VI35_17850 5d3e76cab5e446b40c2981d6cbe6d3c0 311 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 284 5.0E-102 T 17-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 VI35_17850 5d3e76cab5e446b40c2981d6cbe6d3c0 311 Gene3D G3DSA:3.40.1010.20 97 196 5.9E-113 T 17-10-2018 VI35_17850 5d3e76cab5e446b40c2981d6cbe6d3c0 311 Pfam PF02401 LytB protein 3 282 1.7E-93 T 17-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 VI35_17850 5d3e76cab5e446b40c2981d6cbe6d3c0 311 Gene3D G3DSA:3.40.1010.20 6 281 5.9E-113 T 17-10-2018 VI35_07100 bd3e565b02fb16340cd62f8cf225b960 121 SUPERFAMILY SSF54593 7 119 1.21E-24 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_07100 bd3e565b02fb16340cd62f8cf225b960 121 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 113 2.6E-7 T 17-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VI35_07100 bd3e565b02fb16340cd62f8cf225b960 121 Gene3D G3DSA:3.10.180.10 1 118 3.1E-20 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_20830 5c26f1420886cc0099df1b7571393820 388 Gene3D G3DSA:3.30.390.120 324 386 1.1E-7 T 17-10-2018 VI35_20830 5c26f1420886cc0099df1b7571393820 388 SUPERFAMILY SSF51905 11 312 5.34E-35 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_20830 5c26f1420886cc0099df1b7571393820 388 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 110 128 1.9E-20 T 17-10-2018 VI35_20830 5c26f1420886cc0099df1b7571393820 388 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 153 171 1.9E-20 T 17-10-2018 VI35_20830 5c26f1420886cc0099df1b7571393820 388 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 239 255 1.9E-20 T 17-10-2018 VI35_20830 5c26f1420886cc0099df1b7571393820 388 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 15 34 1.9E-20 T 17-10-2018 VI35_20830 5c26f1420886cc0099df1b7571393820 388 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 264 286 1.9E-20 T 17-10-2018 VI35_20830 5c26f1420886cc0099df1b7571393820 388 Gene3D G3DSA:3.50.50.60 118 251 4.8E-79 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_20830 5c26f1420886cc0099df1b7571393820 388 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 279 286 8.8E-15 T 17-10-2018 VI35_20830 5c26f1420886cc0099df1b7571393820 388 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 14 36 8.8E-15 T 17-10-2018 VI35_20830 5c26f1420886cc0099df1b7571393820 388 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 240 254 8.8E-15 T 17-10-2018 VI35_20830 5c26f1420886cc0099df1b7571393820 388 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 153 178 8.8E-15 T 17-10-2018 VI35_20830 5c26f1420886cc0099df1b7571393820 388 Hamap MF_01313 Nitric oxide reductase FlRd-NAD(+) reductase [norW]. 11 388 55.797 T 17-10-2018 IPR023961 Nitric oxide reductase FlRd-NAD(+) reductase GO:0016731|GO:0055114 VI35_20830 5c26f1420886cc0099df1b7571393820 388 Gene3D G3DSA:3.50.50.60 16 287 4.8E-79 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_20830 5c26f1420886cc0099df1b7571393820 388 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 14 286 4.8E-50 T 17-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VI35_20045 24c1886b5fa55bf6f3a8cd1b968755d6 290 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 23 281 1.5E-87 T 17-10-2018 IPR017039 Virulence factor BrkB VI35_20045 24c1886b5fa55bf6f3a8cd1b968755d6 290 PIRSF PIRSF035875 10 289 7.1E-59 T 17-10-2018 IPR017039 Virulence factor BrkB VI35_20045 24c1886b5fa55bf6f3a8cd1b968755d6 290 Pfam PF03631 Virulence factor BrkB 32 278 2.2E-58 T 17-10-2018 IPR017039 Virulence factor BrkB VI35_20045 24c1886b5fa55bf6f3a8cd1b968755d6 290 Hamap MF_00672 UPF0761 membrane protein YihY [yihY]. 13 290 24.379 T 17-10-2018 IPR023679 Uncharacterised protein family UPF0761, bacterial VI35_02715 64885f439cd538de2141d18d04e360f1 119 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 13 79 26.125 T 17-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 VI35_02715 64885f439cd538de2141d18d04e360f1 119 Pfam PF17209 Hfq protein 21 80 4.6E-27 T 17-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 VI35_02715 64885f439cd538de2141d18d04e360f1 119 SUPERFAMILY SSF50182 19 81 8.51E-18 T 17-10-2018 IPR010920 LSM domain superfamily VI35_02715 64885f439cd538de2141d18d04e360f1 119 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 20 78 1.0E-21 T 17-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 VI35_02715 64885f439cd538de2141d18d04e360f1 119 Gene3D G3DSA:2.30.30.100 16 88 3.0E-23 T 17-10-2018 VI35_01705 7263220a224f8f07e0d11a889c402ec7 298 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 25 290 4.0E-102 T 17-10-2018 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841 VI35_01705 7263220a224f8f07e0d11a889c402ec7 298 Gene3D G3DSA:3.20.20.220 1 298 3.6E-111 T 17-10-2018 VI35_01705 7263220a224f8f07e0d11a889c402ec7 298 Pfam PF02219 Methylenetetrahydrofolate reductase 20 291 2.0E-102 T 17-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 VI35_01705 7263220a224f8f07e0d11a889c402ec7 298 SUPERFAMILY SSF51730 22 294 3.53E-95 T 17-10-2018 IPR029041 FAD-linked oxidoreductase-like VI35_01495 4030051b5b1d063148edc2b6fed4091a 162 Gene3D G3DSA:3.40.630.30 1 162 1.5E-43 T 17-10-2018 VI35_01495 4030051b5b1d063148edc2b6fed4091a 162 SUPERFAMILY SSF55729 1 161 2.23E-38 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_01495 4030051b5b1d063148edc2b6fed4091a 162 Pfam PF00583 Acetyltransferase (GNAT) family 34 135 4.3E-17 T 17-10-2018 IPR000182 GNAT domain VI35_00515 adc155d8cd6bd4edfdb139026d4dddbc 217 SUPERFAMILY SSF53271 2 193 3.18E-47 T 17-10-2018 IPR029057 Phosphoribosyltransferase-like VI35_00515 adc155d8cd6bd4edfdb139026d4dddbc 217 Gene3D G3DSA:3.40.50.2020 1 217 9.4E-78 T 17-10-2018 VI35_00515 adc155d8cd6bd4edfdb139026d4dddbc 217 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 10 187 5.7E-67 T 17-10-2018 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VI35_00515 adc155d8cd6bd4edfdb139026d4dddbc 217 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 217 36.193 T 17-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VI35_00515 adc155d8cd6bd4edfdb139026d4dddbc 217 Pfam PF00156 Phosphoribosyl transferase domain 44 161 1.4E-12 T 17-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 VI35_10005 926e04e905a8a3f285d7e1bf82e093f0 282 Pfam PF00378 Enoyl-CoA hydratase/isomerase 19 275 1.4E-36 T 17-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 VI35_10005 926e04e905a8a3f285d7e1bf82e093f0 282 SUPERFAMILY SSF52096 10 277 2.49E-68 T 17-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VI35_10005 926e04e905a8a3f285d7e1bf82e093f0 282 Gene3D G3DSA:3.90.226.10 10 219 3.4E-56 T 17-10-2018 VI35_10005 926e04e905a8a3f285d7e1bf82e093f0 282 Gene3D G3DSA:1.10.12.10 220 280 2.5E-17 T 17-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal VI35_17640 befc255ff1838619417875cedf89d4e2 218 SUPERFAMILY SSF55120 7 215 6.24E-63 T 17-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_17640 befc255ff1838619417875cedf89d4e2 218 Pfam PF00849 RNA pseudouridylate synthase 20 165 3.5E-26 T 17-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 VI35_17640 befc255ff1838619417875cedf89d4e2 218 Gene3D G3DSA:3.30.2350.10 3 215 7.0E-68 T 17-10-2018 VI35_11035 3a0386d5a7800b1d3f297250301550d1 139 Gene3D G3DSA:3.40.1650.10 8 136 1.9E-37 T 17-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 VI35_11035 3a0386d5a7800b1d3f297250301550d1 139 Hamap MF_01661 D-ribose pyranase [rbsD]. 1 139 31.105 T 17-10-2018 IPR023064 D-ribose pyranase GO:0016872 VI35_11035 3a0386d5a7800b1d3f297250301550d1 139 Pfam PF05025 RbsD / FucU transport protein family 1 137 1.3E-43 T 17-10-2018 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 VI35_11035 3a0386d5a7800b1d3f297250301550d1 139 SUPERFAMILY SSF102546 1 139 3.14E-40 T 17-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 VI35_20125 2ccabb4012920274de9869efb4232c99 157 Hamap MF_00598 Protein Smg [smg]. 1 157 32.052 T 17-10-2018 IPR007456 Smg VI35_20125 2ccabb4012920274de9869efb4232c99 157 Pfam PF04361 Protein of unknown function (DUF494) 1 157 9.9E-61 T 17-10-2018 IPR007456 Smg VI35_17415 d8ae91a510842d16243ee4e68ab3c54b 146 SUPERFAMILY SSF110087 4 138 2.22E-43 T 17-10-2018 IPR036182 Copper chaperone PCuAC superfamily VI35_17415 d8ae91a510842d16243ee4e68ab3c54b 146 Pfam PF04314 Copper chaperone PCu(A)C 26 130 1.4E-35 T 17-10-2018 IPR007410 Copper chaperone PCuAC VI35_17415 d8ae91a510842d16243ee4e68ab3c54b 146 Gene3D G3DSA:2.60.40.1890 27 140 4.1E-39 T 17-10-2018 IPR036182 Copper chaperone PCuAC superfamily VI35_09765 858a504bcb2cbf498f9193e88b816f5a 454 Pfam PF02601 Exonuclease VII, large subunit 132 446 1.7E-96 T 17-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 VI35_09765 858a504bcb2cbf498f9193e88b816f5a 454 Pfam PF13742 OB-fold nucleic acid binding domain 16 109 2.3E-30 T 17-10-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 VI35_09765 858a504bcb2cbf498f9193e88b816f5a 454 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 13 449 31.172 T 17-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 VI35_09765 858a504bcb2cbf498f9193e88b816f5a 454 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 17 365 8.1E-136 T 17-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 VI35_08200 ccac634c30346a24e8760c3b0d99f7da 405 Gene3D G3DSA:2.40.370.10 97 281 3.4E-65 T 17-10-2018 IPR023374 AttH-like domain superfamily VI35_08200 ccac634c30346a24e8760c3b0d99f7da 405 Gene3D G3DSA:2.40.370.10 283 405 1.6E-38 T 17-10-2018 IPR023374 AttH-like domain superfamily VI35_08200 ccac634c30346a24e8760c3b0d99f7da 405 SUPERFAMILY SSF159245 86 405 3.14E-95 T 17-10-2018 VI35_08200 ccac634c30346a24e8760c3b0d99f7da 405 Pfam PF17186 Lipocalin-like domain 281 405 1.2E-39 T 17-10-2018 VI35_08200 ccac634c30346a24e8760c3b0d99f7da 405 Pfam PF07143 CrtC N-terminal lipocalin domain 110 278 9.6E-52 T 17-10-2018 IPR010791 AttH domain VI35_07005 7b8c67cc4920afcf81a295f3d097f05c 122 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 118 1.7E-8 T 17-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VI35_07005 7b8c67cc4920afcf81a295f3d097f05c 122 SUPERFAMILY SSF54593 1 118 1.48E-23 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_07005 7b8c67cc4920afcf81a295f3d097f05c 122 Gene3D G3DSA:3.10.180.10 6 121 2.2E-31 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_16650 518e0a11c6e8509bb540faef000bac2d 658 SMART SM00283 394 655 8.7E-70 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_16650 518e0a11c6e8509bb540faef000bac2d 658 Pfam PF00672 HAMP domain 326 376 1.9E-6 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_16650 518e0a11c6e8509bb540faef000bac2d 658 SUPERFAMILY SSF58104 352 656 1.44E-68 T 17-10-2018 VI35_16650 518e0a11c6e8509bb540faef000bac2d 658 SMART SM00304 326 379 1.1E-7 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_16650 518e0a11c6e8509bb540faef000bac2d 658 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 441 622 3.6E-42 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_16650 518e0a11c6e8509bb540faef000bac2d 658 Gene3D G3DSA:1.10.287.950 326 657 2.3E-70 T 17-10-2018 VI35_01990 c212e25740ef82526e0e9be231c844fe 125 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 43 117 1.6E-28 T 17-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 VI35_01990 c212e25740ef82526e0e9be231c844fe 125 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 47 116 1.2E-22 T 17-10-2018 IPR001543 Surface presentation of antigen (SpoA) VI35_01990 c212e25740ef82526e0e9be231c844fe 125 PRINTS PR00956 Flagellar motor switch protein FliN signature 78 91 7.2E-22 T 17-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 VI35_01990 c212e25740ef82526e0e9be231c844fe 125 PRINTS PR00956 Flagellar motor switch protein FliN signature 45 61 7.2E-22 T 17-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 VI35_01990 c212e25740ef82526e0e9be231c844fe 125 PRINTS PR00956 Flagellar motor switch protein FliN signature 91 106 7.2E-22 T 17-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 VI35_01990 c212e25740ef82526e0e9be231c844fe 125 PRINTS PR00956 Flagellar motor switch protein FliN signature 62 78 7.2E-22 T 17-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 VI35_01990 c212e25740ef82526e0e9be231c844fe 125 Gene3D G3DSA:2.30.330.10 33 121 1.1E-27 T 17-10-2018 IPR036429 SpoA-like superfamily VI35_01990 c212e25740ef82526e0e9be231c844fe 125 SUPERFAMILY SSF101801 43 117 1.09E-21 T 17-10-2018 IPR036429 SpoA-like superfamily VI35_02750 40d8147b36fc86af9f0e4062b62069e4 367 Pfam PF01464 Transglycosylase SLT domain 197 318 9.0E-30 T 17-10-2018 IPR008258 Transglycosylase SLT domain 1 VI35_02750 40d8147b36fc86af9f0e4062b62069e4 367 Pfam PF11873 Domain of unknown function (DUF3393) 7 192 1.7E-64 T 17-10-2018 IPR024570 Murein transglycosylase-C, N-terminal VI35_02750 40d8147b36fc86af9f0e4062b62069e4 367 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 214 242 - T 17-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 VI35_02750 40d8147b36fc86af9f0e4062b62069e4 367 SUPERFAMILY SSF53955 157 356 2.48E-37 T 17-10-2018 IPR023346 Lysozyme-like domain superfamily VI35_02750 40d8147b36fc86af9f0e4062b62069e4 367 Gene3D G3DSA:1.10.530.10 178 356 1.2E-51 T 17-10-2018 VI35_16710 f623456a4e720e4d1518eb36705e2753 371 Gene3D G3DSA:3.30.470.20 133 288 3.4E-33 T 17-10-2018 VI35_16710 f623456a4e720e4d1518eb36705e2753 371 TIGRFAM TIGR02735 purC_vibrio: phosphoribosylaminoimidazole-succinocarboxamide synthase 6 370 1.2E-203 T 17-10-2018 IPR014106 Phosphoribosylaminoimidazole-succinocarboxamide synthase, Vibrio-type GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 VI35_16710 f623456a4e720e4d1518eb36705e2753 371 Gene3D G3DSA:3.30.200.20 14 132 2.8E-18 T 17-10-2018 VI35_16710 f623456a4e720e4d1518eb36705e2753 371 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 23 346 20.999 T 17-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 VI35_16710 f623456a4e720e4d1518eb36705e2753 371 Pfam PF01259 SAICAR synthetase 26 299 6.7E-46 T 17-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 VI35_16710 f623456a4e720e4d1518eb36705e2753 371 SUPERFAMILY SSF56104 18 349 7.52E-66 T 17-10-2018 VI35_20700 37c069487c1bc9ba2c1a9841be23b777 418 SUPERFAMILY SSF53850 20 410 4.55E-49 T 17-10-2018 VI35_20700 37c069487c1bc9ba2c1a9841be23b777 418 Gene3D G3DSA:3.40.190.10 21 368 1.1E-145 T 17-10-2018 VI35_20700 37c069487c1bc9ba2c1a9841be23b777 418 Gene3D G3DSA:3.40.190.10 136 393 1.1E-145 T 17-10-2018 VI35_20700 37c069487c1bc9ba2c1a9841be23b777 418 Pfam PF01547 Bacterial extracellular solute-binding protein 55 283 4.1E-16 T 17-10-2018 IPR006059 Bacterial extracellular solute-binding protein VI35_15350 70178dce07b31b30a756d2d3a68c4baa 493 SUPERFAMILY SSF47090 168 241 1.18E-16 T 17-10-2018 IPR036365 PGBD-like superfamily VI35_15350 70178dce07b31b30a756d2d3a68c4baa 493 Pfam PF03734 L,D-transpeptidase catalytic domain 264 431 5.4E-31 T 17-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 VI35_15350 70178dce07b31b30a756d2d3a68c4baa 493 Pfam PF01471 Putative peptidoglycan binding domain 183 237 1.8E-12 T 17-10-2018 IPR002477 Peptidoglycan binding-like VI35_15350 70178dce07b31b30a756d2d3a68c4baa 493 SUPERFAMILY SSF141523 263 422 1.09E-20 T 17-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like VI35_06160 132226ed7519c1cd9e0681583650245e 182 PIRSF PIRSF011443 15 181 1.7E-52 T 17-10-2018 IPR026267 Inner membrane protein YgjV VI35_06160 132226ed7519c1cd9e0681583650245e 182 Pfam PF10688 Bacterial inner membrane protein 20 175 1.2E-49 T 17-10-2018 IPR019629 Uncharacterised protein family HI1736/YgjV VI35_15675 a10a9b83825c40651a5e2b5a58771d14 211 Gene3D G3DSA:3.40.50.1820 14 193 6.0E-26 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_15675 a10a9b83825c40651a5e2b5a58771d14 211 SUPERFAMILY SSF53474 10 185 7.76E-22 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_15675 a10a9b83825c40651a5e2b5a58771d14 211 Pfam PF12697 Alpha/beta hydrolase family 16 178 1.2E-7 T 17-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VI35_10920 506d529e0e6c0bb564bb2fa7eabd9899 178 PIRSF PIRSF010252 1 177 2.0E-68 T 17-10-2018 IPR009809 Cell division protein ZapC VI35_10920 506d529e0e6c0bb564bb2fa7eabd9899 178 Hamap MF_00906 Cell division protein ZapC [zapC]. 2 177 39.853 T 17-10-2018 IPR009809 Cell division protein ZapC VI35_10920 506d529e0e6c0bb564bb2fa7eabd9899 178 Pfam PF07126 Cell-division protein ZapC 3 166 1.3E-65 T 17-10-2018 IPR009809 Cell division protein ZapC VI35_09770 3879deb0f7f668f1cbb62bf1d0b6d7e9 302 SUPERFAMILY SSF103481 39 139 6.54E-15 T 17-10-2018 VI35_09770 3879deb0f7f668f1cbb62bf1d0b6d7e9 302 SUPERFAMILY SSF103481 191 291 9.81E-12 T 17-10-2018 VI35_09770 3879deb0f7f668f1cbb62bf1d0b6d7e9 302 Pfam PF00892 EamA-like transporter family 10 137 2.5E-15 T 17-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VI35_09770 3879deb0f7f668f1cbb62bf1d0b6d7e9 302 Pfam PF00892 EamA-like transporter family 149 289 5.9E-13 T 17-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VI35_09995 44d042e55eff196ad3a19d9215dc09bb 323 Gene3D G3DSA:3.20.20.70 6 305 5.9E-125 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_09995 44d042e55eff196ad3a19d9215dc09bb 323 ProSitePatterns PS01062 Hydroxymethylglutaryl-coenzyme A lyase active site. 238 247 - T 17-10-2018 IPR000138 Hydroxymethylglutaryl-CoA lyase, active site GO:0004419 KEGG: 00072+4.1.3.4|KEGG: 00280+4.1.3.4|KEGG: 00281+4.1.3.4|KEGG: 00650+4.1.3.4|MetaCyc: PWY-5074|Reactome: R-HSA-77111|Reactome: R-HSA-9033241 VI35_09995 44d042e55eff196ad3a19d9215dc09bb 323 Pfam PF00682 HMGL-like 11 285 1.3E-51 T 17-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 VI35_09995 44d042e55eff196ad3a19d9215dc09bb 323 SUPERFAMILY SSF51569 9 294 4.76E-71 T 17-10-2018 VI35_11900 841697d3e29de376b36dbdbc24d7f98a 212 Gene3D G3DSA:3.40.50.720 2 211 1.0E-50 T 17-10-2018 VI35_11900 841697d3e29de376b36dbdbc24d7f98a 212 Pfam PF13460 NAD(P)H-binding 7 197 2.8E-28 T 17-10-2018 IPR016040 NAD(P)-binding domain VI35_11900 841697d3e29de376b36dbdbc24d7f98a 212 SUPERFAMILY SSF51735 1 211 3.21E-35 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_15625 a984a37c661c789512afd76efeb9389c 182 Hamap MF_01104 Protein Syd [syd]. 3 181 32.148 T 17-10-2018 IPR009948 Syd GO:0009898 VI35_15625 a984a37c661c789512afd76efeb9389c 182 Gene3D G3DSA:3.40.1580.20 1 180 1.7E-56 T 17-10-2018 IPR038228 Syd superfamily VI35_15625 a984a37c661c789512afd76efeb9389c 182 Pfam PF07348 Syd protein (SUKH-2) 7 178 6.4E-57 T 17-10-2018 IPR009948 Syd GO:0009898 VI35_16170 3eb47a8e6d0fb20a76f9d69cd7a70eae 243 SUPERFAMILY SSF141868 20 241 4.97E-44 T 17-10-2018 IPR035919 EAL domain superfamily VI35_16170 3eb47a8e6d0fb20a76f9d69cd7a70eae 243 Gene3D G3DSA:3.20.20.450 15 243 1.3E-42 T 17-10-2018 IPR035919 EAL domain superfamily VI35_16170 3eb47a8e6d0fb20a76f9d69cd7a70eae 243 SMART SM00052 5 241 9.9E-16 T 17-10-2018 IPR001633 EAL domain VI35_16170 3eb47a8e6d0fb20a76f9d69cd7a70eae 243 Pfam PF00563 EAL domain 20 234 1.9E-40 T 17-10-2018 IPR001633 EAL domain VI35_17340 d4eec9fb690c09462d9570494735114f 148 Gene3D G3DSA:3.30.420.270 58 137 5.8E-22 T 17-10-2018 VI35_17340 d4eec9fb690c09462d9570494735114f 148 Hamap MF_02203 Tol-Pal system protein TolR [tolR]. 3 145 27.854 T 17-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 VI35_17340 d4eec9fb690c09462d9570494735114f 148 Pfam PF02472 Biopolymer transport protein ExbD/TolR 9 146 6.4E-24 T 17-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 VI35_17340 d4eec9fb690c09462d9570494735114f 148 TIGRFAM TIGR02801 tolR: protein TolR 12 145 1.1E-39 T 17-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 VI35_05375 f7e6dfec05db79635d7280ddb8ccc40a 175 PIRSF PIRSF016481 1 172 1.1E-39 T 17-10-2018 IPR007446 Pilus assembly protein PilP VI35_05375 f7e6dfec05db79635d7280ddb8ccc40a 175 Gene3D G3DSA:2.30.30.830 77 169 1.1E-27 T 17-10-2018 VI35_05375 f7e6dfec05db79635d7280ddb8ccc40a 175 Pfam PF04351 Pilus assembly protein, PilP 21 168 7.9E-48 T 17-10-2018 IPR007446 Pilus assembly protein PilP VI35_01690 bdbb3be9d8ab9d4a8d70c3f775c1abb6 659 Gene3D G3DSA:1.10.287.950 329 659 2.5E-68 T 17-10-2018 VI35_01690 bdbb3be9d8ab9d4a8d70c3f775c1abb6 659 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 445 625 1.8E-41 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_01690 bdbb3be9d8ab9d4a8d70c3f775c1abb6 659 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 411 440 5.9E-8 T 17-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VI35_01690 bdbb3be9d8ab9d4a8d70c3f775c1abb6 659 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 524 553 5.9E-8 T 17-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VI35_01690 bdbb3be9d8ab9d4a8d70c3f775c1abb6 659 Pfam PF12729 Four helix bundle sensory module for signal transduction 3 130 4.4E-8 T 17-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain VI35_01690 bdbb3be9d8ab9d4a8d70c3f775c1abb6 659 SMART SM00304 330 382 2.0E-6 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_01690 bdbb3be9d8ab9d4a8d70c3f775c1abb6 659 SUPERFAMILY SSF58104 350 659 1.96E-70 T 17-10-2018 VI35_01690 bdbb3be9d8ab9d4a8d70c3f775c1abb6 659 SMART SM00283 397 658 3.1E-75 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_02410 8a119b27ce943cf97c3beb82c6bae2c2 205 Pfam PF01810 LysE type translocator 13 200 1.2E-35 T 17-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VI35_02410 8a119b27ce943cf97c3beb82c6bae2c2 205 PIRSF PIRSF006324 1 203 1.5E-49 T 17-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VI35_15365 4dceab4dbbeaaadbb17c6f4759442c92 352 Gene3D G3DSA:3.90.550.10 1 210 1.4E-36 T 17-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VI35_15365 4dceab4dbbeaaadbb17c6f4759442c92 352 SUPERFAMILY SSF53448 7 261 3.87E-42 T 17-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VI35_15365 4dceab4dbbeaaadbb17c6f4759442c92 352 Pfam PF00535 Glycosyl transferase family 2 9 173 5.7E-33 T 17-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 VI35_08145 47cac7c96c50f8113c98d31674c3fdbb 159 Gene3D G3DSA:3.40.630.30 3 158 4.4E-32 T 17-10-2018 VI35_08145 47cac7c96c50f8113c98d31674c3fdbb 159 SUPERFAMILY SSF55729 5 156 9.96E-28 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_08145 47cac7c96c50f8113c98d31674c3fdbb 159 Pfam PF13673 Acetyltransferase (GNAT) domain 35 151 2.0E-18 T 17-10-2018 IPR000182 GNAT domain VI35_03855 adc99ecd06562addb25cb6dd63d6654c 210 Pfam PF03006 Haemolysin-III related 9 203 3.9E-36 T 17-10-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 VI35_03855 adc99ecd06562addb25cb6dd63d6654c 210 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 11 210 2.6E-65 T 17-10-2018 IPR005744 Hly-III GO:0016021|GO:0019835 VI35_02795 0b892a17a43bab6098794683d3d77270 156 Pfam PF05433 Glycine zipper 2TM domain 63 104 5.9E-6 T 17-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 VI35_20370 91d21b7f49f39dde88fe818932e7ab2a 481 Pfam PF13520 Amino acid permease 11 439 2.7E-29 T 17-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VI35_20370 91d21b7f49f39dde88fe818932e7ab2a 481 Gene3D G3DSA:1.20.1740.10 5 469 3.6E-6 T 17-10-2018 VI35_20370 91d21b7f49f39dde88fe818932e7ab2a 481 PIRSF PIRSF006060 1 475 3.8E-50 T 17-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VI35_01105 681d3c0ad61600c911cb5e1d1618f19f 254 Pfam PF13525 Outer membrane lipoprotein 32 238 2.7E-75 T 17-10-2018 IPR039565 Outer membrane lipoprotein BamD-like VI35_01105 681d3c0ad61600c911cb5e1d1618f19f 254 Gene3D G3DSA:1.25.40.10 33 253 5.6E-58 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_01105 681d3c0ad61600c911cb5e1d1618f19f 254 SUPERFAMILY SSF48452 33 108 1.9E-10 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_01105 681d3c0ad61600c911cb5e1d1618f19f 254 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 7 246 38.103 T 17-10-2018 IPR017689 Outer membrane protein assembly factor BamD VI35_01105 681d3c0ad61600c911cb5e1d1618f19f 254 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 10 250 1.5E-86 T 17-10-2018 IPR017689 Outer membrane protein assembly factor BamD VI35_04200 9bb3bacd2a60488709b10449c613c59f 111 Pfam PF06877 Regulator of ribonuclease activity B 6 107 4.1E-30 T 17-10-2018 IPR009671 Regulator of ribonuclease activity B domain VI35_04200 9bb3bacd2a60488709b10449c613c59f 111 PIRSF PIRSF018193 1 111 7.8E-46 T 17-10-2018 IPR016716 Regulator of ribonuclease activity B VI35_04200 9bb3bacd2a60488709b10449c613c59f 111 SUPERFAMILY SSF89946 1 111 2.75E-36 T 17-10-2018 IPR036701 RraB-like superfamily VI35_04200 9bb3bacd2a60488709b10449c613c59f 111 Hamap MF_01888 Regulator of ribonuclease activity B [rraB]. 1 111 29.413 T 17-10-2018 IPR016716 Regulator of ribonuclease activity B VI35_04200 9bb3bacd2a60488709b10449c613c59f 111 Gene3D G3DSA:3.30.70.970 1 111 2.2E-47 T 17-10-2018 IPR036701 RraB-like superfamily VI35_04385 48a8108fe2689cc2e326161fe8df7343 345 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 159 340 9.3E-26 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_04385 48a8108fe2689cc2e326161fe8df7343 345 Gene3D G3DSA:1.10.3720.10 131 337 5.5E-16 T 17-10-2018 IPR035906 MetI-like superfamily VI35_04385 48a8108fe2689cc2e326161fe8df7343 345 SUPERFAMILY SSF161098 136 323 1.57E-17 T 17-10-2018 IPR035906 MetI-like superfamily VI35_19810 fc222d6cbff4e8f7dc19078500fb50e0 117 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 2 117 25.284 T 17-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_19810 fc222d6cbff4e8f7dc19078500fb50e0 117 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 1 117 2.9E-42 T 17-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_19810 fc222d6cbff4e8f7dc19078500fb50e0 117 SUPERFAMILY SSF53137 3 115 1.4E-50 T 17-10-2018 VI35_19810 fc222d6cbff4e8f7dc19078500fb50e0 117 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 3 117 4.4E-45 T 17-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_19810 fc222d6cbff4e8f7dc19078500fb50e0 117 Gene3D G3DSA:3.30.420.100 1 117 3.8E-43 T 17-10-2018 VI35_07805 ded25a18793a5bde94da8fc988f32109 68 Gene3D G3DSA:1.10.260.40 1 60 5.2E-19 T 17-10-2018 VI35_07805 ded25a18793a5bde94da8fc988f32109 68 SUPERFAMILY SSF47413 1 53 6.19E-11 T 17-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VI35_07805 ded25a18793a5bde94da8fc988f32109 68 Pfam PF14549 DNA-binding transcriptional regulator Cro 2 53 9.2E-12 T 17-10-2018 VI35_14900 6f97ab2e5d707c0cf2792a85e52f3c2b 166 SUPERFAMILY SSF54001 42 164 3.2E-41 T 17-10-2018 IPR038765 Papain-like cysteine peptidase superfamily VI35_14900 6f97ab2e5d707c0cf2792a85e52f3c2b 166 Pfam PF00877 NlpC/P60 family 59 163 1.6E-31 T 17-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain VI35_14900 6f97ab2e5d707c0cf2792a85e52f3c2b 166 Gene3D G3DSA:3.90.1720.10 46 165 1.5E-42 T 17-10-2018 VI35_09850 74232c7eda7d6256a3319cb3ed65a0de 306 SUPERFAMILY SSF103481 188 285 7.45E-15 T 17-10-2018 VI35_09850 74232c7eda7d6256a3319cb3ed65a0de 306 SUPERFAMILY SSF103481 38 140 1.44E-15 T 17-10-2018 VI35_09850 74232c7eda7d6256a3319cb3ed65a0de 306 Pfam PF00892 EamA-like transporter family 152 282 2.8E-18 T 17-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VI35_09850 74232c7eda7d6256a3319cb3ed65a0de 306 Pfam PF00892 EamA-like transporter family 9 137 3.0E-22 T 17-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VI35_21095 d0602614bb0928ef59f8bd44028eca67 264 Gene3D G3DSA:3.40.710.10 24 264 3.2E-75 T 17-10-2018 VI35_21095 d0602614bb0928ef59f8bd44028eca67 264 ProSitePatterns PS00337 Beta-lactamase class-D active site. 49 59 - T 17-10-2018 IPR002137 Beta-lactamase, class-D active site GO:0008800|GO:0017001 KEGG: 00311+3.5.2.6 VI35_21095 d0602614bb0928ef59f8bd44028eca67 264 SUPERFAMILY SSF56601 21 236 3.17E-29 T 17-10-2018 IPR012338 Beta-lactamase/transpeptidase-like VI35_21095 d0602614bb0928ef59f8bd44028eca67 264 Pfam PF00905 Penicillin binding protein transpeptidase domain 43 257 2.4E-42 T 17-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 VI35_12360 55cc176dcc7fc36db4ca492d279a8874 244 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 1 239 8.4E-88 T 17-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 VI35_12360 55cc176dcc7fc36db4ca492d279a8874 244 Gene3D G3DSA:1.10.8.590 167 244 1.4E-29 T 17-10-2018 VI35_12360 55cc176dcc7fc36db4ca492d279a8874 244 Pfam PF00588 SpoU rRNA Methylase family 5 154 2.8E-35 T 17-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 VI35_12360 55cc176dcc7fc36db4ca492d279a8874 244 Gene3D G3DSA:3.40.1280.10 1 164 1.6E-66 T 17-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VI35_12360 55cc176dcc7fc36db4ca492d279a8874 244 SUPERFAMILY SSF75217 4 177 3.14E-39 T 17-10-2018 IPR029028 Alpha/beta knot methyltransferases VI35_12360 55cc176dcc7fc36db4ca492d279a8874 244 PIRSF PIRSF004808 1 244 2.7E-78 T 17-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 VI35_20915 07db8c28fb12881d581e0ae7af662b2a 489 Hamap MF_01636 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [ubiD]. 1 487 72.985 T 17-10-2018 IPR023677 UbiD decarboxylyase, bacteria GO:0005886|GO:0006744|GO:0008694 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 VI35_20915 07db8c28fb12881d581e0ae7af662b2a 489 SUPERFAMILY SSF143968 323 485 4.71E-67 T 17-10-2018 VI35_20915 07db8c28fb12881d581e0ae7af662b2a 489 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 6 455 9.5E-175 T 17-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 VI35_20915 07db8c28fb12881d581e0ae7af662b2a 489 Gene3D G3DSA:3.40.1670.10 337 454 2.0E-51 T 17-10-2018 VI35_20915 07db8c28fb12881d581e0ae7af662b2a 489 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 10 431 1.2E-170 T 17-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 VI35_20915 07db8c28fb12881d581e0ae7af662b2a 489 SUPERFAMILY SSF50475 3 322 7.45E-126 T 17-10-2018 VI35_20915 07db8c28fb12881d581e0ae7af662b2a 489 Gene3D G3DSA:1.20.5.570 455 489 1.3E-14 T 17-10-2018 VI35_02630 930b453bc588ecf1051c233b22937bba 337 Pfam PF08402 TOBE domain 256 327 3.8E-17 T 17-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 VI35_02630 930b453bc588ecf1051c233b22937bba 337 SUPERFAMILY SSF52540 4 241 6.08E-83 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_02630 930b453bc588ecf1051c233b22937bba 337 SUPERFAMILY SSF50331 238 329 1.29E-13 T 17-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal VI35_02630 930b453bc588ecf1051c233b22937bba 337 SMART SM00382 28 211 2.9E-16 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_02630 930b453bc588ecf1051c233b22937bba 337 Gene3D G3DSA:3.40.50.300 2 269 9.6E-74 T 17-10-2018 VI35_02630 930b453bc588ecf1051c233b22937bba 337 Pfam PF00005 ABC transporter 20 161 3.1E-34 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_02630 930b453bc588ecf1051c233b22937bba 337 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_13465 7748d22c2e61e9ed78119252028a9374 469 Pfam PF13520 Amino acid permease 6 420 5.5E-70 T 17-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VI35_13465 7748d22c2e61e9ed78119252028a9374 469 PIRSF PIRSF006060 393 466 54.0 T 17-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VI35_13465 7748d22c2e61e9ed78119252028a9374 469 PIRSF PIRSF006060 1 436 8.1E-47 T 17-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VI35_13465 7748d22c2e61e9ed78119252028a9374 469 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 3 467 2.7E-157 T 17-10-2018 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 VI35_13465 7748d22c2e61e9ed78119252028a9374 469 Gene3D G3DSA:1.20.1740.10 1 449 2.9E-59 T 17-10-2018 VI35_16425 abdeafb7669ba61d9c48fdcb81eb4d61 202 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 19 190 1.1E-31 T 17-10-2018 IPR003740 Uncharacterised membrane protein YitT VI35_13450 41a96edef06d203dc4e490f45c88dbd1 323 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 139 315 1.1E-21 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_13450 41a96edef06d203dc4e490f45c88dbd1 323 Gene3D G3DSA:1.10.3720.10 115 322 7.1E-55 T 17-10-2018 IPR035906 MetI-like superfamily VI35_13450 41a96edef06d203dc4e490f45c88dbd1 323 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 121 214 2.1E-25 T 17-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 VI35_13450 41a96edef06d203dc4e490f45c88dbd1 323 SUPERFAMILY SSF161098 121 312 2.35E-48 T 17-10-2018 IPR035906 MetI-like superfamily VI35_05595 ccfb45f8f8c36b68ba4a405acf0d2c3f 266 Pfam PF13371 Tetratricopeptide repeat 185 256 4.6E-24 T 17-10-2018 VI35_05595 ccfb45f8f8c36b68ba4a405acf0d2c3f 266 Pfam PF13369 Transglutaminase-like superfamily 39 182 3.1E-40 T 17-10-2018 IPR032698 Protein SirB1, N-terminal Reactome: R-HSA-8951664|Reactome: R-HSA-983168 VI35_14135 3bff60f8226cd35077c27dfd7db44b07 231 SUPERFAMILY SSF81452 24 229 4.06E-57 T 17-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_14135 3bff60f8226cd35077c27dfd7db44b07 231 Gene3D G3DSA:1.20.120.80 46 231 2.3E-58 T 17-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_14135 3bff60f8226cd35077c27dfd7db44b07 231 Pfam PF00510 Cytochrome c oxidase subunit III 17 229 1.8E-15 T 17-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_14135 3bff60f8226cd35077c27dfd7db44b07 231 TIGRFAM TIGR02842 CyoC: cytochrome o ubiquinol oxidase, subunit III 52 231 5.3E-89 T 17-10-2018 IPR014206 Cytochrome o ubiquinol oxidase, subunit III GO:0005886|GO:0008827|GO:0019646 VI35_15855 28165615833455751062e84cfab075e6 249 Gene3D G3DSA:3.40.30.10 71 244 2.8E-43 T 17-10-2018 VI35_15855 28165615833455751062e84cfab075e6 249 Pfam PF13462 Thioredoxin 80 241 2.6E-24 T 17-10-2018 IPR012336 Thioredoxin-like fold VI35_15855 28165615833455751062e84cfab075e6 249 SUPERFAMILY SSF52833 73 240 8.12E-40 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_06855 6434b04141b7087bcd8199ac7e6f58a3 81 TIGRFAM TIGR01682 moaD: molybdopterin converting factor, subunit 1 2 81 8.6E-23 T 17-10-2018 VI35_06855 6434b04141b7087bcd8199ac7e6f58a3 81 Pfam PF02597 ThiS family 4 81 2.0E-22 T 17-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 VI35_06855 6434b04141b7087bcd8199ac7e6f58a3 81 SUPERFAMILY SSF54285 1 81 3.74E-25 T 17-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp VI35_06855 6434b04141b7087bcd8199ac7e6f58a3 81 Gene3D G3DSA:3.10.20.30 1 81 3.3E-28 T 17-10-2018 IPR012675 Beta-grasp domain superfamily VI35_09680 9e311acef5e255c5dfd58edd4d99211a 332 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 238 305 7.2E-17 T 17-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VI35_09680 9e311acef5e255c5dfd58edd4d99211a 332 Pfam PF00005 ABC transporter 24 187 2.7E-27 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_09680 9e311acef5e255c5dfd58edd4d99211a 332 SUPERFAMILY SSF52540 3 269 1.49E-49 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_09680 9e311acef5e255c5dfd58edd4d99211a 332 Gene3D G3DSA:3.40.50.300 2 331 3.3E-74 T 17-10-2018 VI35_09680 9e311acef5e255c5dfd58edd4d99211a 332 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 236 323 2.1E-22 T 17-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VI35_09680 9e311acef5e255c5dfd58edd4d99211a 332 SMART SM00382 32 243 4.7E-4 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_13900 b40bb39765e17ce41c7145e354314e8d 235 SUPERFAMILY SSF52172 12 187 1.42E-38 T 17-10-2018 IPR011006 CheY-like superfamily VI35_13900 b40bb39765e17ce41c7145e354314e8d 235 Gene3D G3DSA:3.40.50.2300 3 132 1.6E-37 T 17-10-2018 VI35_13900 b40bb39765e17ce41c7145e354314e8d 235 SMART SM00448 12 123 1.1E-39 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_13900 b40bb39765e17ce41c7145e354314e8d 235 Pfam PF00072 Response regulator receiver domain 14 123 4.9E-28 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_13900 b40bb39765e17ce41c7145e354314e8d 235 Pfam PF00486 Transcriptional regulatory protein, C terminal 158 230 9.7E-21 T 17-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VI35_13900 b40bb39765e17ce41c7145e354314e8d 235 Gene3D G3DSA:1.10.10.10 134 233 7.2E-27 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_13900 b40bb39765e17ce41c7145e354314e8d 235 SMART SM00862 156 230 2.2E-22 T 17-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VI35_10580 45f83ee77e7af0f64907045b1e6586cc 171 TIGRFAM TIGR00752 slp: outer membrane lipoprotein, Slp family 5 165 1.5E-28 T 17-10-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 VI35_10580 45f83ee77e7af0f64907045b1e6586cc 171 PIRSF PIRSF004982 1 171 9.1E-55 T 17-10-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 VI35_10580 45f83ee77e7af0f64907045b1e6586cc 171 Pfam PF03843 Outer membrane lipoprotein Slp family 15 162 2.3E-44 T 17-10-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 VI35_20480 a8612e4c651751d3938c018b53b98815 208 Gene3D G3DSA:3.40.30.10 39 190 8.5E-41 T 17-10-2018 VI35_20480 a8612e4c651751d3938c018b53b98815 208 Pfam PF02630 SCO1/SenC 39 178 1.1E-28 T 17-10-2018 IPR003782 Copper chaperone SCO1/SenC Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_20480 a8612e4c651751d3938c018b53b98815 208 SUPERFAMILY SSF52833 38 187 2.4E-41 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_13270 445529c9658ec3420682794c87339478 241 Pfam PF00149 Calcineurin-like phosphoesterase 1 199 5.0E-12 T 17-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 VI35_13270 445529c9658ec3420682794c87339478 241 Hamap MF_00575 UDP-2,3-diacylglucosamine hydrolase [lpxH]. 1 241 125.607 T 17-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 VI35_13270 445529c9658ec3420682794c87339478 241 TIGRFAM TIGR01854 lipid_A_lpxH: UDP-2,3-diacylglucosamine diphosphatase 3 229 1.6E-101 T 17-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 VI35_13270 445529c9658ec3420682794c87339478 241 SUPERFAMILY SSF56300 1 219 1.82E-34 T 17-10-2018 VI35_13270 445529c9658ec3420682794c87339478 241 Gene3D G3DSA:3.60.21.10 1 222 6.8E-17 T 17-10-2018 IPR029052 Metallo-dependent phosphatase-like VI35_18595 ae929dc948c564f652f3d8fc2fa14e9a 242 TIGRFAM TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases 50 180 1.7E-44 T 17-10-2018 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase GO:0003841|GO:0008654|GO:0016020 KEGG: 00561+2.3.1.51|KEGG: 00564+2.3.1.51|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7417|MetaCyc: PWY-7587|MetaCyc: PWY-7589|MetaCyc: PWY-7782|Reactome: R-HSA-1483166 VI35_18595 ae929dc948c564f652f3d8fc2fa14e9a 242 SMART SM00563 67 182 1.1E-40 T 17-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VI35_18595 ae929dc948c564f652f3d8fc2fa14e9a 242 SUPERFAMILY SSF69593 2 233 7.45E-48 T 17-10-2018 VI35_18595 ae929dc948c564f652f3d8fc2fa14e9a 242 Pfam PF01553 Acyltransferase 52 180 1.7E-31 T 17-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VI35_12650 2335e2397487cb612a094d8b1a467be5 369 Gene3D G3DSA:3.20.20.70 3 366 7.2E-138 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_12650 2335e2397487cb612a094d8b1a467be5 369 SUPERFAMILY SSF51395 1 367 4.89E-124 T 17-10-2018 VI35_12650 2335e2397487cb612a094d8b1a467be5 369 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 6 341 2.1E-85 T 17-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 VI35_15730 c058497f080c9a0cbe66f5df8b789685 409 TIGRFAM TIGR01937 nqrB: NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit 4 404 6.4E-193 T 17-10-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0010181|GO:0016021|GO:0016655|GO:0022904 VI35_15730 c058497f080c9a0cbe66f5df8b789685 409 Hamap MF_00426 Na(+)-translocating NADH-quinone reductase subunit B [nqrB]. 2 408 36.728 T 17-10-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0010181|GO:0016021|GO:0016655|GO:0022904 VI35_15730 c058497f080c9a0cbe66f5df8b789685 409 Pfam PF03116 NQR2, RnfD, RnfE family 41 401 7.3E-107 T 17-10-2018 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD GO:0016020|GO:0055085 VI35_15730 c058497f080c9a0cbe66f5df8b789685 409 PIRSF PIRSF016055 1 409 6.4E-197 T 17-10-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0010181|GO:0016021|GO:0016655|GO:0022904 VI35_08560 a854b17fae04b5c0880b133d27be663c 262 Gene3D G3DSA:3.40.50.300 4 257 3.5E-46 T 17-10-2018 VI35_08560 a854b17fae04b5c0880b133d27be663c 262 SMART SM00382 35 222 3.3E-5 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_08560 a854b17fae04b5c0880b133d27be663c 262 SUPERFAMILY SSF52540 22 235 2.36E-40 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_08560 a854b17fae04b5c0880b133d27be663c 262 Pfam PF00005 ABC transporter 26 175 9.2E-16 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_05960 b7ac74ec1f926d6492543ddf8f967277 289 Gene3D G3DSA:3.40.50.300 16 257 2.9E-58 T 17-10-2018 VI35_05960 b7ac74ec1f926d6492543ddf8f967277 289 SUPERFAMILY SSF52540 17 280 9.94E-54 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_05960 b7ac74ec1f926d6492543ddf8f967277 289 PIRSF PIRSF003092 1 279 4.1E-82 T 17-10-2018 IPR025501 ATP binding protein MinD VI35_05960 b7ac74ec1f926d6492543ddf8f967277 289 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 17 255 2.0E-21 T 17-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 VI35_18470 7ebfb9bc65767ae0151c394e5d26bf05 168 Gene3D G3DSA:1.10.10.10 71 114 6.1E-13 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_18470 7ebfb9bc65767ae0151c394e5d26bf05 168 Hamap MF_01114 Regulatory protein RecX [recX]. 10 168 14.046 T 17-10-2018 IPR003783 Regulatory protein RecX GO:0006282 VI35_18470 7ebfb9bc65767ae0151c394e5d26bf05 168 Gene3D G3DSA:1.10.10.10 116 165 2.0E-8 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_18470 7ebfb9bc65767ae0151c394e5d26bf05 168 Gene3D G3DSA:1.10.10.10 22 68 1.1E-5 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_18470 7ebfb9bc65767ae0151c394e5d26bf05 168 Pfam PF02631 RecX family 46 162 6.3E-26 T 17-10-2018 IPR003783 Regulatory protein RecX GO:0006282 VI35_11530 2474650eeada65193308b5d38923ed79 134 PRINTS PR01483 Fatty acid synthase signature 42 63 2.6E-5 T 17-10-2018 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 VI35_11530 2474650eeada65193308b5d38923ed79 134 PRINTS PR01483 Fatty acid synthase signature 20 42 2.6E-5 T 17-10-2018 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 VI35_11530 2474650eeada65193308b5d38923ed79 134 Pfam PF01575 MaoC like domain 15 104 1.1E-22 T 17-10-2018 IPR002539 MaoC-like dehydratase domain VI35_11530 2474650eeada65193308b5d38923ed79 134 Gene3D G3DSA:3.10.129.10 1 134 4.2E-43 T 17-10-2018 VI35_11530 2474650eeada65193308b5d38923ed79 134 SUPERFAMILY SSF54637 6 134 1.48E-37 T 17-10-2018 IPR029069 HotDog domain superfamily VI35_00400 32aa1da06d085753fac1b25d0bf742a7 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 27 58 4.4E-9 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_00400 32aa1da06d085753fac1b25d0bf742a7 198 SUPERFAMILY SSF46689 6 72 2.36E-13 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_00400 32aa1da06d085753fac1b25d0bf742a7 198 Gene3D G3DSA:1.10.357.10 8 196 2.0E-64 T 17-10-2018 VI35_00400 32aa1da06d085753fac1b25d0bf742a7 198 Hamap MF_01839 Nucleoid occlusion factor SlmA [slmA]. 1 196 40.885 T 17-10-2018 IPR023769 Nucleoid occlusion factor SlmA GO:0010974 VI35_20175 66afdd1365760c922ba9f92eff5d9078 170 Pfam PF12838 4Fe-4S dicluster domain 41 96 8.4E-9 T 17-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VI35_20175 66afdd1365760c922ba9f92eff5d9078 170 Gene3D G3DSA:3.30.70.20 111 170 1.6E-9 T 17-10-2018 VI35_20175 66afdd1365760c922ba9f92eff5d9078 170 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 41 52 - T 17-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VI35_20175 66afdd1365760c922ba9f92eff5d9078 170 Gene3D G3DSA:3.30.70.20 33 110 5.1E-11 T 17-10-2018 VI35_20175 66afdd1365760c922ba9f92eff5d9078 170 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 82 93 - T 17-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VI35_20175 66afdd1365760c922ba9f92eff5d9078 170 SUPERFAMILY SSF54862 37 168 2.15E-19 T 17-10-2018 VI35_19240 2661e96b987cd114bada3a1cdcb12acd 66 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 66 6.4E-18 T 17-10-2018 IPR010035 ThiS, thiamine-biosynthesis VI35_19240 2661e96b987cd114bada3a1cdcb12acd 66 Gene3D G3DSA:3.10.20.30 1 66 8.0E-21 T 17-10-2018 IPR012675 Beta-grasp domain superfamily VI35_19240 2661e96b987cd114bada3a1cdcb12acd 66 Pfam PF02597 ThiS family 8 66 1.5E-13 T 17-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 VI35_19240 2661e96b987cd114bada3a1cdcb12acd 66 SUPERFAMILY SSF54285 1 66 9.45E-17 T 17-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp VI35_18890 f68bdd80dbd771a7b78effe24859b8b7 915 PRINTS PR00931 Microbial collagenase metalloprotease (M9) signature 781 796 4.5E-21 T 17-10-2018 IPR002169 Peptidase M9A/M9B, collagenase, bacterial GO:0004222|GO:0005576|GO:0006508|GO:0008270 VI35_18890 f68bdd80dbd771a7b78effe24859b8b7 915 PRINTS PR00931 Microbial collagenase metalloprotease (M9) signature 715 731 4.5E-21 T 17-10-2018 IPR002169 Peptidase M9A/M9B, collagenase, bacterial GO:0004222|GO:0005576|GO:0006508|GO:0008270 VI35_18890 f68bdd80dbd771a7b78effe24859b8b7 915 PRINTS PR00931 Microbial collagenase metalloprotease (M9) signature 758 776 4.5E-21 T 17-10-2018 IPR002169 Peptidase M9A/M9B, collagenase, bacterial GO:0004222|GO:0005576|GO:0006508|GO:0008270 VI35_18890 f68bdd80dbd771a7b78effe24859b8b7 915 PRINTS PR00931 Microbial collagenase metalloprotease (M9) signature 387 405 4.5E-21 T 17-10-2018 IPR002169 Peptidase M9A/M9B, collagenase, bacterial GO:0004222|GO:0005576|GO:0006508|GO:0008270 VI35_18890 f68bdd80dbd771a7b78effe24859b8b7 915 Gene3D G3DSA:1.10.1740.190 636 774 1.0E-36 T 17-10-2018 VI35_18890 f68bdd80dbd771a7b78effe24859b8b7 915 Pfam PF01752 Collagenase 638 849 2.6E-71 T 17-10-2018 IPR002169 Peptidase M9A/M9B, collagenase, bacterial GO:0004222|GO:0005576|GO:0006508|GO:0008270 VI35_02825 8ec872bc4b964ca2fb3ddf5378f8b264 132 SUPERFAMILY SSF55174 10 106 8.83E-29 T 17-10-2018 VI35_02825 8ec872bc4b964ca2fb3ddf5378f8b264 132 PIRSF PIRSF016821 8 132 1.8E-41 T 17-10-2018 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 VI35_02825 8ec872bc4b964ca2fb3ddf5378f8b264 132 Gene3D G3DSA:3.10.290.10 5 110 1.1E-36 T 17-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 VI35_02825 8ec872bc4b964ca2fb3ddf5378f8b264 132 SMART SM00363 11 72 5.5E-8 T 17-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_02825 8ec872bc4b964ca2fb3ddf5378f8b264 132 Pfam PF01479 S4 domain 11 56 1.4E-12 T 17-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VI35_01145 252d5c6b1f37009a7404dd56f172ba63 134 Pfam PF00571 CBS domain 14 58 7.2E-6 T 17-10-2018 IPR000644 CBS domain VI35_01145 252d5c6b1f37009a7404dd56f172ba63 134 Pfam PF00571 CBS domain 71 124 7.5E-10 T 17-10-2018 IPR000644 CBS domain VI35_01145 252d5c6b1f37009a7404dd56f172ba63 134 SUPERFAMILY SSF54631 1 128 2.4E-28 T 17-10-2018 VI35_01145 252d5c6b1f37009a7404dd56f172ba63 134 Gene3D G3DSA:3.10.580.10 1 130 2.5E-25 T 17-10-2018 VI35_01145 252d5c6b1f37009a7404dd56f172ba63 134 SMART SM00116 78 125 6.0 T 17-10-2018 IPR000644 CBS domain VI35_01145 252d5c6b1f37009a7404dd56f172ba63 134 SMART SM00116 11 59 0.028 T 17-10-2018 IPR000644 CBS domain VI35_06590 64d1836cb1db26f0452732e8cc791c25 293 SUPERFAMILY SSF103481 170 273 2.22E-15 T 17-10-2018 VI35_06590 64d1836cb1db26f0452732e8cc791c25 293 Pfam PF00892 EamA-like transporter family 3 128 1.4E-13 T 17-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VI35_06590 64d1836cb1db26f0452732e8cc791c25 293 Pfam PF00892 EamA-like transporter family 138 269 5.3E-19 T 17-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VI35_06590 64d1836cb1db26f0452732e8cc791c25 293 SUPERFAMILY SSF103481 37 131 4.45E-8 T 17-10-2018 VI35_00580 97535af80d333567f4de2bb03e1e94c1 299 SUPERFAMILY SSF69593 18 288 2.35E-30 T 17-10-2018 VI35_00580 97535af80d333567f4de2bb03e1e94c1 299 Pfam PF01553 Acyltransferase 79 230 1.1E-13 T 17-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VI35_00580 97535af80d333567f4de2bb03e1e94c1 299 SMART SM00563 89 231 1.0E-21 T 17-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VI35_01715 881465311a499d28b7787b40de48cb28 396 Pfam PF03594 Benzoate membrane transport protein 17 390 7.7E-152 T 17-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 VI35_01715 881465311a499d28b7787b40de48cb28 396 TIGRFAM TIGR00843 benE: benzoate transporter 9 387 8.7E-133 T 17-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 VI35_18915 5151d75f7dacb2390f6e01af8aa13254 246 Pfam PF03280 Proteobacterial lipase chaperone protein 74 219 1.2E-16 T 17-10-2018 IPR004961 Lipase chaperone GO:0006457|GO:0016020|GO:0051082 VI35_18915 5151d75f7dacb2390f6e01af8aa13254 246 SUPERFAMILY SSF158855 52 241 8.89E-36 T 17-10-2018 VI35_03890 f5670636276986c9c9ca196c1fa20d1d 76 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 5 70 4.0E-24 T 17-10-2018 IPR010221 VCBS repeat VI35_18050 7b9c0154327467b0b7aac346ce7f6b9d 164 Gene3D G3DSA:3.30.160.70 1 69 2.1E-14 T 17-10-2018 VI35_18050 7b9c0154327467b0b7aac346ce7f6b9d 164 Gene3D G3DSA:1.10.10.10 71 156 3.8E-37 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_18050 7b9c0154327467b0b7aac346ce7f6b9d 164 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 1 70 2.2E-8 T 17-10-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 VI35_18050 7b9c0154327467b0b7aac346ce7f6b9d 164 SUPERFAMILY SSF46767 73 154 1.22E-33 T 17-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 VI35_18050 7b9c0154327467b0b7aac346ce7f6b9d 164 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 75 154 4.8E-34 T 17-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 VI35_18050 7b9c0154327467b0b7aac346ce7f6b9d 164 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 124 130 - T 17-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 VI35_18050 7b9c0154327467b0b7aac346ce7f6b9d 164 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 5 154 41.688 T 17-10-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 VI35_18050 7b9c0154327467b0b7aac346ce7f6b9d 164 SUPERFAMILY SSF53155 2 78 3.53E-14 T 17-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 VI35_18050 7b9c0154327467b0b7aac346ce7f6b9d 164 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 74 153 1.2E-37 T 17-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 VI35_16955 30c0f178762fc8ce3341255142a8ef2d 217 Gene3D G3DSA:3.40.50.10610 23 190 4.5E-65 T 17-10-2018 VI35_16955 30c0f178762fc8ce3341255142a8ef2d 217 Pfam PF05643 Putative bacterial lipoprotein (DUF799) 13 210 3.8E-92 T 17-10-2018 IPR008517 Protein of unknown function DUF799 VI35_18355 c7fac7aacdb2b9917bc97c395027e972 170 Gene3D G3DSA:3.40.630.30 1 165 7.3E-36 T 17-10-2018 VI35_18355 c7fac7aacdb2b9917bc97c395027e972 170 Pfam PF00583 Acetyltransferase (GNAT) family 39 139 3.4E-14 T 17-10-2018 IPR000182 GNAT domain VI35_18355 c7fac7aacdb2b9917bc97c395027e972 170 SUPERFAMILY SSF55729 1 165 7.72E-32 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_21065 fb79a6ce9f253e5a935caeb6e8325348 245 PIRSF PIRSF028069 2 243 5.8E-70 T 17-10-2018 IPR016866 Uncharacterised conserved protein UCP028069 VI35_21065 fb79a6ce9f253e5a935caeb6e8325348 245 Pfam PF11932 Protein of unknown function (DUF3450) 18 235 3.7E-67 T 17-10-2018 IPR016866 Uncharacterised conserved protein UCP028069 VI35_01420 7bba0e38ab6d70dbbc9baa224cae20d2 209 TIGRFAM TIGR02365 dha_L_ycgS: dihydroxyacetone kinase, L subunit 8 204 1.3E-75 T 17-10-2018 IPR012737 Dihydroxyacetone kinase, subunit L GO:0016772 KEGG: 00561+2.7.1.121 VI35_01420 7bba0e38ab6d70dbbc9baa224cae20d2 209 SMART SM01120 31 205 1.6E-81 T 17-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 VI35_01420 7bba0e38ab6d70dbbc9baa224cae20d2 209 Pfam PF02734 DAK2 domain 32 204 2.4E-56 T 17-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 VI35_01420 7bba0e38ab6d70dbbc9baa224cae20d2 209 Gene3D G3DSA:1.25.40.340 1 208 1.2E-73 T 17-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 VI35_01420 7bba0e38ab6d70dbbc9baa224cae20d2 209 SUPERFAMILY SSF101473 3 205 7.72E-59 T 17-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 VI35_01575 f599f2b2caa9eb07642491a5e85148d4 130 Pfam PF07681 DoxX 8 87 5.9E-18 T 17-10-2018 IPR032808 DoxX family VI35_18630 2e701dee776152c40635aa21659a21ad 94 Gene3D G3DSA:1.10.287.110 1 89 4.4E-24 T 17-10-2018 IPR036869 Chaperone J-domain superfamily VI35_18630 2e701dee776152c40635aa21659a21ad 94 SUPERFAMILY SSF46565 2 71 1.31E-23 T 17-10-2018 IPR036869 Chaperone J-domain superfamily VI35_18630 2e701dee776152c40635aa21659a21ad 94 Pfam PF00226 DnaJ domain 3 69 1.2E-20 T 17-10-2018 IPR001623 DnaJ domain VI35_18630 2e701dee776152c40635aa21659a21ad 94 SMART SM00271 2 65 9.7E-24 T 17-10-2018 IPR001623 DnaJ domain VI35_18630 2e701dee776152c40635aa21659a21ad 94 PRINTS PR00625 DnaJ domain signature 23 38 1.5E-16 T 17-10-2018 IPR001623 DnaJ domain VI35_18630 2e701dee776152c40635aa21659a21ad 94 PRINTS PR00625 DnaJ domain signature 45 65 1.5E-16 T 17-10-2018 IPR001623 DnaJ domain VI35_18630 2e701dee776152c40635aa21659a21ad 94 PRINTS PR00625 DnaJ domain signature 5 23 1.5E-16 T 17-10-2018 IPR001623 DnaJ domain VI35_08065 e1c99882091a528167f5a13d807d534f 301 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 5 287 21.258 T 17-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 VI35_08065 e1c99882091a528167f5a13d807d534f 301 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 33 276 2.8E-58 T 17-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 VI35_08065 e1c99882091a528167f5a13d807d534f 301 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 94 273 2.3E-47 T 17-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VI35_08065 e1c99882091a528167f5a13d807d534f 301 SUPERFAMILY SSF82866 116 283 2.62E-32 T 17-10-2018 VI35_08065 e1c99882091a528167f5a13d807d534f 301 Gene3D G3DSA:1.20.1640.10 95 297 9.4E-12 T 17-10-2018 VI35_08065 e1c99882091a528167f5a13d807d534f 301 PRINTS PR01755 Bacterial translocase SecF protein signature 144 158 1.8E-23 T 17-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VI35_08065 e1c99882091a528167f5a13d807d534f 301 PRINTS PR01755 Bacterial translocase SecF protein signature 192 210 1.8E-23 T 17-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VI35_08065 e1c99882091a528167f5a13d807d534f 301 PRINTS PR01755 Bacterial translocase SecF protein signature 32 47 1.8E-23 T 17-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VI35_08065 e1c99882091a528167f5a13d807d534f 301 PRINTS PR01755 Bacterial translocase SecF protein signature 224 239 1.8E-23 T 17-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VI35_08065 e1c99882091a528167f5a13d807d534f 301 Pfam PF07549 SecD/SecF GG Motif 28 51 2.0E-6 T 17-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site VI35_08065 e1c99882091a528167f5a13d807d534f 301 Pfam PF02355 Protein export membrane protein 110 280 2.8E-52 T 17-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial VI35_05835 d50ec77c4f7632d94b405ac581e9f234 327 SUPERFAMILY SSF161098 94 309 3.4E-17 T 17-10-2018 IPR035906 MetI-like superfamily VI35_05835 d50ec77c4f7632d94b405ac581e9f234 327 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 117 323 1.9E-39 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_05835 d50ec77c4f7632d94b405ac581e9f234 327 Gene3D G3DSA:1.10.3720.10 89 316 3.9E-18 T 17-10-2018 IPR035906 MetI-like superfamily VI35_17115 f144d79e738db5f22a1dfcf80efc29ab 198 Pfam PF01810 LysE type translocator 19 190 5.1E-13 T 17-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VI35_17455 a19d5da5b62fb748cb580675092ea549 406 SUPERFAMILY SSF52540 68 350 1.18E-64 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_17455 a19d5da5b62fb748cb580675092ea549 406 SMART SM00490 252 333 1.5E-26 T 17-10-2018 IPR001650 Helicase, C-terminal VI35_17455 a19d5da5b62fb748cb580675092ea549 406 SMART SM00487 19 216 1.1E-50 T 17-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VI35_17455 a19d5da5b62fb748cb580675092ea549 406 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 147 155 - T 17-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VI35_17455 a19d5da5b62fb748cb580675092ea549 406 Gene3D G3DSA:3.40.50.300 1 204 9.8E-67 T 17-10-2018 VI35_17455 a19d5da5b62fb748cb580675092ea549 406 Pfam PF00271 Helicase conserved C-terminal domain 225 333 1.2E-23 T 17-10-2018 IPR001650 Helicase, C-terminal VI35_17455 a19d5da5b62fb748cb580675092ea549 406 Pfam PF00270 DEAD/DEAH box helicase 24 188 1.0E-44 T 17-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VI35_17455 a19d5da5b62fb748cb580675092ea549 406 Gene3D G3DSA:3.40.50.300 208 359 3.2E-41 T 17-10-2018 VI35_08255 eb36ffa05cadb8e3121c15cf7f8f74fc 279 Pfam PF03239 Iron permease FTR1 family 1 257 5.2E-36 T 17-10-2018 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0016020|GO:0033573|GO:0034755 VI35_11825 458f1397f4a8ca5796a2933e7b1ca090 506 Gene3D G3DSA:1.25.40.80 130 315 4.1E-98 T 17-10-2018 VI35_11825 458f1397f4a8ca5796a2933e7b1ca090 506 Pfam PF04244 Deoxyribodipyrimidine photo-lyase-related protein 4 216 5.6E-64 T 17-10-2018 IPR007357 Deoxyribodipyrimidine photolyase-related protein VI35_11825 458f1397f4a8ca5796a2933e7b1ca090 506 Gene3D G3DSA:3.40.50.620 5 224 4.1E-98 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_11825 458f1397f4a8ca5796a2933e7b1ca090 506 Gene3D G3DSA:1.10.10.1710 440 505 4.5E-24 T 17-10-2018 VI35_11825 458f1397f4a8ca5796a2933e7b1ca090 506 SUPERFAMILY SSF48173 223 492 1.19E-59 T 17-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 VI35_11825 458f1397f4a8ca5796a2933e7b1ca090 506 Gene3D G3DSA:1.10.579.10 319 439 8.8E-54 T 17-10-2018 VI35_00440 9ceaf49330aae26e72c35a4f5f9e5c25 290 Pfam PF04393 Protein of unknown function (DUF535) 11 284 1.1E-75 T 17-10-2018 IPR007488 Protein of unknown function DUF535 VI35_06930 bdacd3caae7df846e6889b451889243c 186 Pfam PF04264 YceI-like domain 23 180 2.8E-43 T 17-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like VI35_06930 bdacd3caae7df846e6889b451889243c 186 SMART SM00867 22 184 5.4E-70 T 17-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like VI35_06930 bdacd3caae7df846e6889b451889243c 186 Gene3D G3DSA:2.40.128.110 21 186 7.5E-55 T 17-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily VI35_06930 bdacd3caae7df846e6889b451889243c 186 SUPERFAMILY SSF101874 19 185 6.02E-57 T 17-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily VI35_11940 f4ff3a7cc6cad1b68a7c1fa6b0390378 505 Gene3D G3DSA:1.10.3360.10 71 312 2.8E-71 T 17-10-2018 IPR023289 VPA0735-like domain superfamily VI35_11940 f4ff3a7cc6cad1b68a7c1fa6b0390378 505 Pfam PF06863 Protein of unknown function (DUF1254) 108 232 4.1E-21 T 17-10-2018 IPR010679 Domain of unknown function DUF1254 VI35_11940 f4ff3a7cc6cad1b68a7c1fa6b0390378 505 SUPERFAMILY SSF160935 59 505 3.01E-96 T 17-10-2018 VI35_11940 f4ff3a7cc6cad1b68a7c1fa6b0390378 505 Gene3D G3DSA:2.60.40.1610 100 251 2.8E-71 T 17-10-2018 IPR037050 Domain of unknown function DUF1254 superfamily VI35_11940 f4ff3a7cc6cad1b68a7c1fa6b0390378 505 Pfam PF06742 Protein of unknown function (DUF1214) 384 489 6.0E-22 T 17-10-2018 IPR010621 Domain of unknown function DUF1214 VI35_11940 f4ff3a7cc6cad1b68a7c1fa6b0390378 505 Gene3D G3DSA:2.60.120.600 329 505 1.0E-43 T 17-10-2018 IPR037049 Domain of unknown function DUF1214, C-terminal domain superfamily VI35_10540 90f6178bac2418dad08b5478305437a6 207 Pfam PF00117 Glutamine amidotransferase class-I 8 205 9.0E-18 T 17-10-2018 IPR017926 Glutamine amidotransferase VI35_10540 90f6178bac2418dad08b5478305437a6 207 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 5 207 34.262 T 17-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 VI35_10540 90f6178bac2418dad08b5478305437a6 207 Gene3D G3DSA:3.40.50.880 2 207 6.1E-67 T 17-10-2018 IPR029062 Class I glutamine amidotransferase-like VI35_10540 90f6178bac2418dad08b5478305437a6 207 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 7 206 4.2E-65 T 17-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 VI35_10540 90f6178bac2418dad08b5478305437a6 207 SUPERFAMILY SSF52317 6 206 7.02E-52 T 17-10-2018 IPR029062 Class I glutamine amidotransferase-like VI35_10540 90f6178bac2418dad08b5478305437a6 207 PIRSF PIRSF000495 4 207 1.5E-62 T 17-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 VI35_05940 ba8f87d38d952ec6c05678e0a82ee4ae 265 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 80 99 2.7E-20 T 17-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 VI35_05940 ba8f87d38d952ec6c05678e0a82ee4ae 265 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 180 202 2.7E-20 T 17-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 VI35_05940 ba8f87d38d952ec6c05678e0a82ee4ae 265 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 202 221 2.7E-20 T 17-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 VI35_05940 ba8f87d38d952ec6c05678e0a82ee4ae 265 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 21 42 2.7E-20 T 17-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 VI35_05940 ba8f87d38d952ec6c05678e0a82ee4ae 265 Pfam PF01311 Bacterial export proteins, family 1 13 246 2.3E-62 T 17-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 VI35_05940 ba8f87d38d952ec6c05678e0a82ee4ae 265 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 13 254 3.8E-68 T 17-10-2018 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 VI35_08920 03c72ea4f41d502ec468c1d189dcdbb7 65 Pfam PF11686 Protein of unknown function (DUF3283) 4 59 2.1E-12 T 17-10-2018 IPR021700 Protein of unknown function DUF3283 VI35_08920 03c72ea4f41d502ec468c1d189dcdbb7 65 SUPERFAMILY SSF46575 1 62 5.23E-5 T 17-10-2018 VI35_03125 39cd8985a61e29b5bfd14720b22e1378 221 SUPERFAMILY SSF161098 14 200 4.06E-41 T 17-10-2018 IPR035906 MetI-like superfamily VI35_03125 39cd8985a61e29b5bfd14720b22e1378 221 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 46 214 9.7E-21 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_03125 39cd8985a61e29b5bfd14720b22e1378 221 Gene3D G3DSA:1.10.3720.10 1 219 1.1E-52 T 17-10-2018 IPR035906 MetI-like superfamily VI35_03125 39cd8985a61e29b5bfd14720b22e1378 221 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 109 1.7E-25 T 17-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 VI35_02005 8f8bef131e7e2386f750300fe30272dd 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 25 46 1.7E-24 T 17-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 VI35_02005 8f8bef131e7e2386f750300fe30272dd 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 84 103 1.7E-24 T 17-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 VI35_02005 8f8bef131e7e2386f750300fe30272dd 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 183 205 1.7E-24 T 17-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 VI35_02005 8f8bef131e7e2386f750300fe30272dd 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 205 224 1.7E-24 T 17-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 VI35_02005 8f8bef131e7e2386f750300fe30272dd 260 Pfam PF01311 Bacterial export proteins, family 1 18 246 3.3E-62 T 17-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 VI35_02005 8f8bef131e7e2386f750300fe30272dd 260 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 18 255 3.0E-57 T 17-10-2018 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 VI35_17100 0f4f6117ffcdeac33336c0df7bea2b53 404 Pfam PF14486 Domain of unknown function (DUF4432) 64 369 1.9E-109 T 17-10-2018 IPR027839 Protein of unknown function DUF4432 VI35_17100 0f4f6117ffcdeac33336c0df7bea2b53 404 Gene3D G3DSA:2.70.98.80 20 403 3.6E-126 T 17-10-2018 VI35_07235 36d07906bf36a199e9af194619b3b1bd 276 PIRSF PIRSF028756 1 266 1.1E-134 T 17-10-2018 IPR016898 Polyphosphate kinase 2 KEGG: 00190+2.7.4.1 VI35_07235 36d07906bf36a199e9af194619b3b1bd 276 Gene3D G3DSA:3.40.50.300 1 245 4.9E-99 T 17-10-2018 VI35_07235 36d07906bf36a199e9af194619b3b1bd 276 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 12 236 5.1E-112 T 17-10-2018 IPR022488 Polyphosphate kinase-2-related VI35_07235 36d07906bf36a199e9af194619b3b1bd 276 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 11 237 2.1E-117 T 17-10-2018 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 KEGG: 00190+2.7.4.1 VI35_07235 36d07906bf36a199e9af194619b3b1bd 276 SUPERFAMILY SSF52540 43 232 5.43E-32 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_06150 29d86cca9fb3d25fb5a580e6372d7311 206 SUPERFAMILY SSF51569 3 204 2.93E-66 T 17-10-2018 VI35_06150 29d86cca9fb3d25fb5a580e6372d7311 206 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 36 45 - T 17-10-2018 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 VI35_06150 29d86cca9fb3d25fb5a580e6372d7311 206 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 124 137 - T 17-10-2018 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 VI35_06150 29d86cca9fb3d25fb5a580e6372d7311 206 Pfam PF01081 KDPG and KHG aldolase 6 196 2.5E-71 T 17-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 VI35_06150 29d86cca9fb3d25fb5a580e6372d7311 206 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 7 204 7.7E-82 T 17-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 VI35_06150 29d86cca9fb3d25fb5a580e6372d7311 206 Gene3D G3DSA:3.20.20.70 1 206 3.8E-77 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_03555 1ca221491eed7e693fce80cb69e697bf 158 Gene3D G3DSA:2.40.50.870 21 158 6.9E-45 T 17-10-2018 VI35_03555 1ca221491eed7e693fce80cb69e697bf 158 Pfam PF11736 Protein of unknown function (DUF3299) 59 153 3.3E-42 T 17-10-2018 IPR021727 Protein of unknown function DUF3299 VI35_17235 650dedae8c269527ddc50b60c84e118f 286 Gene3D G3DSA:2.70.98.10 4 286 3.5E-84 T 17-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 VI35_17235 650dedae8c269527ddc50b60c84e118f 286 Pfam PF01263 Aldose 1-epimerase 20 284 3.7E-43 T 17-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 VI35_17235 650dedae8c269527ddc50b60c84e118f 286 PIRSF PIRSF016020 5 286 3.3E-61 T 17-10-2018 IPR025532 Glucose-6-phosphate 1-epimerase KEGG: 00010+5.1.3.15 VI35_17235 650dedae8c269527ddc50b60c84e118f 286 SUPERFAMILY SSF74650 13 283 1.0E-63 T 17-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 VI35_17225 de449763bed5db927ec728a192c71252 729 Gene3D G3DSA:3.20.20.80 180 723 4.6E-120 T 17-10-2018 VI35_17225 de449763bed5db927ec728a192c71252 729 SUPERFAMILY SSF51445 169 720 1.25E-145 T 17-10-2018 IPR017853 Glycoside hydrolase superfamily VI35_17225 de449763bed5db927ec728a192c71252 729 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 140 720 1.1E-185 T 17-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 VI35_17225 de449763bed5db927ec728a192c71252 729 Pfam PF02446 4-alpha-glucanotransferase 185 701 5.4E-126 T 17-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 VI35_19695 d6a569ef80ffd460f0d71c86899adfae 280 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.0E-8 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_19695 d6a569ef80ffd460f0d71c86899adfae 280 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.0E-8 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_19695 d6a569ef80ffd460f0d71c86899adfae 280 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.0E-8 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_19695 d6a569ef80ffd460f0d71c86899adfae 280 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 56 3.6E-17 T 17-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VI35_19695 d6a569ef80ffd460f0d71c86899adfae 280 Pfam PF03466 LysR substrate binding domain 88 274 1.4E-26 T 17-10-2018 IPR005119 LysR, substrate-binding VI35_19695 d6a569ef80ffd460f0d71c86899adfae 280 Gene3D G3DSA:1.10.10.10 1 85 3.0E-21 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_19695 d6a569ef80ffd460f0d71c86899adfae 280 SUPERFAMILY SSF46785 1 80 5.06E-18 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_19695 d6a569ef80ffd460f0d71c86899adfae 280 SUPERFAMILY SSF53850 89 277 4.52E-29 T 17-10-2018 VI35_19695 d6a569ef80ffd460f0d71c86899adfae 280 Gene3D G3DSA:3.40.190.290 89 277 8.6E-25 T 17-10-2018 VI35_02850 7688f9b47c942578560f73e2902b78e4 143 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 7 27 - T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_02850 7688f9b47c942578560f73e2902b78e4 143 SUPERFAMILY SSF54523 34 139 4.08E-38 T 17-10-2018 VI35_02850 7688f9b47c942578560f73e2902b78e4 143 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 7 138 2.3E-57 T 17-10-2018 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 VI35_02850 7688f9b47c942578560f73e2902b78e4 143 PRINTS PR00813 Bacterial general secretion pathway protein G signature 8 33 1.3E-22 T 17-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 VI35_02850 7688f9b47c942578560f73e2902b78e4 143 PRINTS PR00813 Bacterial general secretion pathway protein G signature 44 62 1.3E-22 T 17-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 VI35_02850 7688f9b47c942578560f73e2902b78e4 143 Pfam PF08334 Type II secretion system (T2SS), protein G 31 137 5.9E-39 T 17-10-2018 IPR013545 Type II secretion system protein G VI35_02850 7688f9b47c942578560f73e2902b78e4 143 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 28 4.2E-9 T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_02850 7688f9b47c942578560f73e2902b78e4 143 Gene3D G3DSA:3.30.700.10 22 137 2.5E-39 T 17-10-2018 VI35_02850 7688f9b47c942578560f73e2902b78e4 143 Pfam PF07963 Prokaryotic N-terminal methylation motif 3 28 1.5E-10 T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_17520 5e3dd68d4fb44597770ca7f6cdb75375 548 TIGRFAM TIGR03368 cellulose_yhjU: cellulose synthase operon protein YhjU 19 546 8.7E-202 T 17-10-2018 IPR017744 Cellulose biosynthesis protein BcsG VI35_17520 5e3dd68d4fb44597770ca7f6cdb75375 548 Pfam PF11658 Cellulose biosynthesis protein BcsG 21 543 1.7E-210 T 17-10-2018 IPR017744 Cellulose biosynthesis protein BcsG VI35_09360 76f7d4866aa2e4081b4d4e3793cfeff7 333 Pfam PF02653 Branched-chain amino acid transport system / permease component 63 320 1.9E-42 T 17-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 VI35_19155 e717dfb6e4cee31de7b755d9907e28f6 345 Pfam PF01757 Acyltransferase family 5 326 4.1E-17 T 17-10-2018 IPR002656 Acyltransferase 3 GO:0016747 VI35_17905 42e8bcab7edb4502dd694772e943ad29 264 ProSitePatterns PS00091 Thymidylate synthase active site. 126 154 - T 17-10-2018 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 VI35_17905 42e8bcab7edb4502dd694772e943ad29 264 SUPERFAMILY SSF55831 1 264 1.44E-129 T 17-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 VI35_17905 42e8bcab7edb4502dd694772e943ad29 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 3 85 2.5E-40 T 17-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 VI35_17905 42e8bcab7edb4502dd694772e943ad29 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 84 264 1.8E-93 T 17-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 VI35_17905 42e8bcab7edb4502dd694772e943ad29 264 Hamap MF_00008 Thymidylate synthase [thyA]. 1 264 40.204 T 17-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 VI35_17905 42e8bcab7edb4502dd694772e943ad29 264 Pfam PF00303 Thymidylate synthase 3 264 9.0E-126 T 17-10-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 VI35_17905 42e8bcab7edb4502dd694772e943ad29 264 PRINTS PR00108 Thymidylate synthase family signature 159 185 1.5E-46 T 17-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 VI35_17905 42e8bcab7edb4502dd694772e943ad29 264 PRINTS PR00108 Thymidylate synthase family signature 115 134 1.5E-46 T 17-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 VI35_17905 42e8bcab7edb4502dd694772e943ad29 264 PRINTS PR00108 Thymidylate synthase family signature 197 214 1.5E-46 T 17-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 VI35_17905 42e8bcab7edb4502dd694772e943ad29 264 PRINTS PR00108 Thymidylate synthase family signature 141 156 1.5E-46 T 17-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 VI35_17905 42e8bcab7edb4502dd694772e943ad29 264 PRINTS PR00108 Thymidylate synthase family signature 42 63 1.5E-46 T 17-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 VI35_17905 42e8bcab7edb4502dd694772e943ad29 264 Gene3D G3DSA:3.30.572.10 1 264 4.0E-133 T 17-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 VI35_07225 45fb1a989b4b5df09554e3ebc0e32f84 296 Gene3D G3DSA:1.10.3720.10 1 283 1.4E-72 T 17-10-2018 IPR035906 MetI-like superfamily VI35_07225 45fb1a989b4b5df09554e3ebc0e32f84 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 106 286 5.6E-18 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_07225 45fb1a989b4b5df09554e3ebc0e32f84 296 SUPERFAMILY SSF161098 10 296 1.5E-67 T 17-10-2018 IPR035906 MetI-like superfamily VI35_11070 206406cc09ca4ffd88488b16732a0fab 152 SUPERFAMILY SSF56524 28 151 6.41E-12 T 17-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 VI35_04225 4a152ed685cf5c582ec00d3987bdbeb4 82 Gene3D G3DSA:1.10.720.30 17 76 1.8E-33 T 17-10-2018 IPR036361 SAP domain superfamily VI35_04225 4a152ed685cf5c582ec00d3987bdbeb4 82 Pfam PF09905 DNA-binding protein VF530 9 71 5.8E-37 T 17-10-2018 IPR018668 DNA-binding protein VF530-like GO:0003677 VI35_05235 0bcd03c445bfb8889b289fa99a76fa0a 215 Gene3D G3DSA:1.25.40.10 41 205 1.5E-14 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_05235 0bcd03c445bfb8889b289fa99a76fa0a 215 SUPERFAMILY SSF48452 75 187 7.21E-12 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_14070 1640d2674de8939c9f5da1f2a7cb049e 80 Pfam PF11730 Protein of unknown function (DUF3297) 9 79 2.3E-37 T 17-10-2018 IPR021724 Protein of unknown function DUF3297 VI35_06940 5655e2363557b87ba2e94b4af4d65c3b 373 SMART SM00997 167 321 4.2E-27 T 17-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 VI35_06940 5655e2363557b87ba2e94b4af4d65c3b 373 SUPERFAMILY SSF51735 173 318 3.43E-16 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_06940 5655e2363557b87ba2e94b4af4d65c3b 373 Gene3D G3DSA:3.40.50.720 163 321 1.7E-36 T 17-10-2018 VI35_06940 5655e2363557b87ba2e94b4af4d65c3b 373 Gene3D G3DSA:3.40.50.1480 12 365 1.7E-36 T 17-10-2018 VI35_06940 5655e2363557b87ba2e94b4af4d65c3b 373 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 172 316 1.2E-11 T 17-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 VI35_19605 57740b16328296a66af323ede256aed4 100 Pfam PF04175 Protein of unknown function (DUF406) 10 98 1.7E-28 T 17-10-2018 IPR005272 Conserved hypothetical protein CHP00743 VI35_19605 57740b16328296a66af323ede256aed4 100 Gene3D G3DSA:3.30.70.860 1 100 1.1E-32 T 17-10-2018 IPR035571 UPF0234-like, C-terminal VI35_05040 7526fbc76e3fe7b2e1ef52ebb4a21502 409 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 164 177 1.8E-16 T 17-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 VI35_05040 7526fbc76e3fe7b2e1ef52ebb4a21502 409 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 137 154 1.8E-16 T 17-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 VI35_05040 7526fbc76e3fe7b2e1ef52ebb4a21502 409 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 81 92 1.8E-16 T 17-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 VI35_05040 7526fbc76e3fe7b2e1ef52ebb4a21502 409 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 299 389 4.0E-24 T 17-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VI35_05040 7526fbc76e3fe7b2e1ef52ebb4a21502 409 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 48 279 7.1E-93 T 17-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 VI35_05040 7526fbc76e3fe7b2e1ef52ebb4a21502 409 SUPERFAMILY SSF69189 299 391 8.63E-25 T 17-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VI35_05040 7526fbc76e3fe7b2e1ef52ebb4a21502 409 Gene3D G3DSA:3.40.710.10 42 298 1.2E-92 T 17-10-2018 VI35_05040 7526fbc76e3fe7b2e1ef52ebb4a21502 409 SMART SM00936 299 389 2.9E-32 T 17-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VI35_05040 7526fbc76e3fe7b2e1ef52ebb4a21502 409 Gene3D G3DSA:2.60.410.10 299 389 1.5E-28 T 17-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VI35_05040 7526fbc76e3fe7b2e1ef52ebb4a21502 409 SUPERFAMILY SSF56601 3 299 1.61E-83 T 17-10-2018 IPR012338 Beta-lactamase/transpeptidase-like VI35_17770 56260e1729fce82330678bd7ca3bea6e 400 Pfam PF07007 Lysozyme inhibitor LprI 42 112 1.2E-6 T 17-10-2018 IPR009739 Lysozyme inhibitor LprI, N-terminal VI35_08595 1e8b779242ecb068f99b356be13b3c3c 83 Pfam PF01455 HupF/HypC family 1 67 1.1E-23 T 17-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC VI35_08595 1e8b779242ecb068f99b356be13b3c3c 83 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 59 71 1.1E-15 T 17-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC VI35_08595 1e8b779242ecb068f99b356be13b3c3c 83 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 2 9 1.1E-15 T 17-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC VI35_08595 1e8b779242ecb068f99b356be13b3c3c 83 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 41 57 1.1E-15 T 17-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC VI35_08595 1e8b779242ecb068f99b356be13b3c3c 83 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 19 35 1.1E-15 T 17-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC VI35_08595 1e8b779242ecb068f99b356be13b3c3c 83 Gene3D G3DSA:2.40.50.970 1 80 8.5E-29 T 17-10-2018 IPR037254 HupF/HypC superfamily VI35_08595 1e8b779242ecb068f99b356be13b3c3c 83 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 1 79 2.6E-25 T 17-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC VI35_08595 1e8b779242ecb068f99b356be13b3c3c 83 SUPERFAMILY SSF159127 1 79 1.7E-24 T 17-10-2018 IPR037254 HupF/HypC superfamily VI35_05945 fc23fc091fce1a38939209b44b613927 376 Pfam PF01312 FlhB HrpN YscU SpaS Family 6 347 4.5E-123 T 17-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 VI35_05945 fc23fc091fce1a38939209b44b613927 376 Gene3D G3DSA:3.40.1690.10 217 358 1.1E-56 T 17-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal VI35_05945 fc23fc091fce1a38939209b44b613927 376 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 6 352 3.2E-126 T 17-10-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 VI35_05945 fc23fc091fce1a38939209b44b613927 376 SUPERFAMILY SSF160544 243 351 6.8E-40 T 17-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal VI35_05945 fc23fc091fce1a38939209b44b613927 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 207 225 2.5E-38 T 17-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 VI35_05945 fc23fc091fce1a38939209b44b613927 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 302 323 2.5E-38 T 17-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 VI35_05945 fc23fc091fce1a38939209b44b613927 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 227 244 2.5E-38 T 17-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 VI35_05945 fc23fc091fce1a38939209b44b613927 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 271 286 2.5E-38 T 17-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 VI35_05945 fc23fc091fce1a38939209b44b613927 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 9 31 2.5E-38 T 17-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 VI35_14540 1ed481157f533f8e3effe04ccc916d86 185 Pfam PF11810 Domain of unknown function (DUF3332) 10 176 3.1E-40 T 17-10-2018 IPR021768 Protein of unknown function DUF3332 VI35_00225 80739b531f72e5eb0e535a9e9ed2f7ab 144 Gene3D G3DSA:3.40.50.620 5 144 7.9E-46 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_00225 80739b531f72e5eb0e535a9e9ed2f7ab 144 SUPERFAMILY SSF52402 6 141 4.27E-31 T 17-10-2018 VI35_00225 80739b531f72e5eb0e535a9e9ed2f7ab 144 PIRSF PIRSF006276 1 144 2.2E-52 T 17-10-2018 IPR006015 Universal stress protein A VI35_00225 80739b531f72e5eb0e535a9e9ed2f7ab 144 Pfam PF00582 Universal stress protein family 6 141 3.6E-20 T 17-10-2018 IPR006016 UspA VI35_07355 207d380c94a0564b1af0f9a902f469a6 342 Pfam PF11168 Protein of unknown function (DUF2955) 8 142 1.2E-7 T 17-10-2018 IPR022604 Protein of unknown function DUF2955 VI35_11285 77aa6b2b89e5e446c71b6cb9225522b3 211 Pfam PF01810 LysE type translocator 16 208 1.0E-33 T 17-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VI35_11285 77aa6b2b89e5e446c71b6cb9225522b3 211 PIRSF PIRSF006324 1 210 3.1E-54 T 17-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VI35_01985 41279333f5c152554ab323a2d8a7349a 236 Gene3D G3DSA:2.30.330.10 156 236 6.1E-8 T 17-10-2018 IPR036429 SpoA-like superfamily VI35_01985 41279333f5c152554ab323a2d8a7349a 236 SUPERFAMILY SSF101801 163 235 6.15E-12 T 17-10-2018 IPR036429 SpoA-like superfamily VI35_01985 41279333f5c152554ab323a2d8a7349a 236 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 167 234 2.0E-14 T 17-10-2018 IPR001543 Surface presentation of antigen (SpoA) VI35_20735 413ffc43097db43b060fb25682a5d0c2 35 Gene3D G3DSA:3.30.1330.40 4 35 1.2E-6 T 17-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 VI35_20735 413ffc43097db43b060fb25682a5d0c2 35 SUPERFAMILY SSF55298 8 35 1.16E-5 T 17-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 VI35_19535 cc185508f01969be278650ff71e66c8b 434 Gene3D G3DSA:2.30.40.10 37 428 2.0E-173 T 17-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VI35_19535 cc185508f01969be278650ff71e66c8b 434 TIGRFAM TIGR01224 hutI: imidazolonepropionase 54 429 7.4E-143 T 17-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VI35_19535 cc185508f01969be278650ff71e66c8b 434 Hamap MF_00372 Imidazolonepropionase [hutI]. 32 431 40.662 T 17-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VI35_19535 cc185508f01969be278650ff71e66c8b 434 SUPERFAMILY SSF51556 92 391 1.11E-88 T 17-10-2018 IPR032466 Metal-dependent hydrolase VI35_19535 cc185508f01969be278650ff71e66c8b 434 Gene3D G3DSA:3.20.20.140 93 391 2.0E-173 T 17-10-2018 VI35_19535 cc185508f01969be278650ff71e66c8b 434 Pfam PF01979 Amidohydrolase family 89 408 2.9E-18 T 17-10-2018 IPR006680 Amidohydrolase-related GO:0016787 VI35_19535 cc185508f01969be278650ff71e66c8b 434 SUPERFAMILY SSF51338 31 431 9.07E-30 T 17-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VI35_16010 8026aa1a680aee50a842c46fb0427334 274 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 23 244 4.1E-93 T 17-10-2018 IPR022488 Polyphosphate kinase-2-related VI35_16010 8026aa1a680aee50a842c46fb0427334 274 PIRSF PIRSF028756 1 271 1.2E-111 T 17-10-2018 IPR016898 Polyphosphate kinase 2 KEGG: 00190+2.7.4.1 VI35_16010 8026aa1a680aee50a842c46fb0427334 274 SUPERFAMILY SSF52540 52 238 3.15E-27 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_16010 8026aa1a680aee50a842c46fb0427334 274 Gene3D G3DSA:3.40.50.300 2 264 7.4E-86 T 17-10-2018 VI35_16010 8026aa1a680aee50a842c46fb0427334 274 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 23 245 1.2E-103 T 17-10-2018 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 KEGG: 00190+2.7.4.1 VI35_08405 a42a6ff61e00a743861df23abc3478ad 167 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 10 160 1.0E-55 T 17-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 VI35_08405 a42a6ff61e00a743861df23abc3478ad 167 PIRSF PIRSF028301 3 167 9.3E-61 T 17-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 VI35_08405 a42a6ff61e00a743861df23abc3478ad 167 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 9 161 5.9E-54 T 17-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 VI35_12130 16f176c560d5d9949897092e2e79759b 135 Gene3D G3DSA:1.10.260.40 1 64 1.1E-5 T 17-10-2018 VI35_12505 7670869902d8b7557bc4ade64c11f766 268 SUPERFAMILY SSF161098 60 246 1.05E-19 T 17-10-2018 IPR035906 MetI-like superfamily VI35_12505 7670869902d8b7557bc4ade64c11f766 268 Gene3D G3DSA:1.10.3720.10 53 256 1.1E-17 T 17-10-2018 IPR035906 MetI-like superfamily VI35_12505 7670869902d8b7557bc4ade64c11f766 268 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 82 252 1.0E-19 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_01200 d0973751d34add9a83496354ecbf8c71 82 Pfam PF13670 Peptidase propeptide and YPEB domain 10 80 4.8E-10 T 17-10-2018 IPR025711 PepSY domain VI35_02060 b043f387aeb789ddbe4752aceb152cf2 90 SUPERFAMILY SSF101498 1 87 2.22E-11 T 17-10-2018 IPR035890 Anti-sigma-28 factor FlgM superfamily VI35_02060 b043f387aeb789ddbe4752aceb152cf2 90 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 8 89 9.9E-18 T 17-10-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 VI35_02060 b043f387aeb789ddbe4752aceb152cf2 90 Pfam PF04316 Anti-sigma-28 factor, FlgM 35 86 7.7E-10 T 17-10-2018 IPR031316 Anti-sigma-28 factor FlgM, C-terminal VI35_13215 01a361d8d81234de2a3bd38ee416121b 164 Pfam PF14345 GDYXXLXY protein 14 149 1.2E-30 T 17-10-2018 IPR025833 GDYXXLXY protein VI35_07490 09765be3c8898c36b0db029f0bd55881 310 Pfam PF03186 CobD/Cbib protein 13 275 2.4E-21 T 17-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 VI35_01770 fc5ef43f98f7b2ad3fd5ba6ce18305e4 418 Gene3D G3DSA:3.65.10.10 12 413 1.7E-165 T 17-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 VI35_01770 fc5ef43f98f7b2ad3fd5ba6ce18305e4 418 SUPERFAMILY SSF55205 1 417 4.58E-145 T 17-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 VI35_01770 fc5ef43f98f7b2ad3fd5ba6ce18305e4 418 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 416 44.355 T 17-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VI35_01770 fc5ef43f98f7b2ad3fd5ba6ce18305e4 418 Gene3D G3DSA:3.65.10.10 21 228 1.7E-165 T 17-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 VI35_01770 fc5ef43f98f7b2ad3fd5ba6ce18305e4 418 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 415 1.5E-179 T 17-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VI35_01770 fc5ef43f98f7b2ad3fd5ba6ce18305e4 418 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 406 3.9E-117 T 17-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 VI35_12085 889d3c20217d5869683bbcd1faa2f366 241 SUPERFAMILY SSF55469 1 241 8.9E-75 T 17-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 VI35_12085 889d3c20217d5869683bbcd1faa2f366 241 Gene3D G3DSA:3.40.109.10 1 240 4.0E-74 T 17-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 VI35_12085 889d3c20217d5869683bbcd1faa2f366 241 PIRSF PIRSF005426 1 241 1.3E-85 T 17-10-2018 IPR016446 Flavin oxidoreductase Frp family GO:0016491|GO:0055114 VI35_12085 889d3c20217d5869683bbcd1faa2f366 241 Pfam PF00881 Nitroreductase family 8 159 1.1E-21 T 17-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 VI35_05280 7869aeb737979ea09efa09dddb07ba87 118 SUPERFAMILY SSF81343 2 113 1.96E-41 T 17-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_05280 7869aeb737979ea09efa09dddb07ba87 118 PIRSF PIRSF000179 1 116 1.8E-46 T 17-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 VI35_05280 7869aeb737979ea09efa09dddb07ba87 118 ProDom PD015693 FUMARATE MEMBRANE REDUCTASE D SUBUNIT INNER TRANSMEMBRANE HYDROPHOBIC REDUCTASE POLYPEPTIDE 2 109 1.0E-29 T 17-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 VI35_05280 7869aeb737979ea09efa09dddb07ba87 118 Pfam PF02313 Fumarate reductase subunit D 1 112 2.1E-47 T 17-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 VI35_05280 7869aeb737979ea09efa09dddb07ba87 118 Gene3D G3DSA:1.20.1300.10 1 115 4.9E-44 T 17-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_05935 6df17ffa4e02d85d296011c49a1c4b22 89 PIRSF PIRSF004669 1 89 1.2E-25 T 17-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 VI35_05935 6df17ffa4e02d85d296011c49a1c4b22 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 87 1.6E-28 T 17-10-2018 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 VI35_05935 6df17ffa4e02d85d296011c49a1c4b22 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 1.3E-12 T 17-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 VI35_05935 6df17ffa4e02d85d296011c49a1c4b22 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 1.3E-12 T 17-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 VI35_05935 6df17ffa4e02d85d296011c49a1c4b22 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 1.3E-12 T 17-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 VI35_05935 6df17ffa4e02d85d296011c49a1c4b22 89 Pfam PF01313 Bacterial export proteins, family 3 6 78 1.6E-26 T 17-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 VI35_02490 0efd4b596395255ebe3e314c39f55d8d 291 SUPERFAMILY SSF103481 46 135 3.79E-6 T 17-10-2018 VI35_02490 0efd4b596395255ebe3e314c39f55d8d 291 Pfam PF00892 EamA-like transporter family 148 279 6.1E-14 T 17-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VI35_02490 0efd4b596395255ebe3e314c39f55d8d 291 SUPERFAMILY SSF103481 200 285 1.2E-10 T 17-10-2018 VI35_12980 d1feb0d12ed64ec50ed8520f98dff125 2292 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 1468 1559 2.2E-8 T 17-10-2018 IPR010221 VCBS repeat VI35_12980 d1feb0d12ed64ec50ed8520f98dff125 2292 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 1214 1305 2.2E-8 T 17-10-2018 IPR010221 VCBS repeat VI35_12980 d1feb0d12ed64ec50ed8520f98dff125 2292 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 2230 2282 2.6E-4 T 17-10-2018 IPR010221 VCBS repeat VI35_12980 d1feb0d12ed64ec50ed8520f98dff125 2292 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 1976 2067 2.2E-8 T 17-10-2018 IPR010221 VCBS repeat VI35_12980 d1feb0d12ed64ec50ed8520f98dff125 2292 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 706 797 2.2E-8 T 17-10-2018 IPR010221 VCBS repeat VI35_12980 d1feb0d12ed64ec50ed8520f98dff125 2292 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 1722 1813 2.2E-8 T 17-10-2018 IPR010221 VCBS repeat VI35_12980 d1feb0d12ed64ec50ed8520f98dff125 2292 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 452 543 2.2E-8 T 17-10-2018 IPR010221 VCBS repeat VI35_12980 d1feb0d12ed64ec50ed8520f98dff125 2292 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 960 1051 1.2E-8 T 17-10-2018 IPR010221 VCBS repeat VI35_11785 1d4fbceab8485b3633342dbe9022b33c 196 TIGRFAM TIGR03146 cyt_nit_nrfB: cytochrome c nitrite reductase, pentaheme subunit 38 180 1.1E-58 T 17-10-2018 IPR017564 Cytochrome c nitrite reductase, pentahaem subunit GO:0006807|GO:0020037|GO:0042597 VI35_11785 1d4fbceab8485b3633342dbe9022b33c 196 Pfam PF13435 Cytochrome c554 and c-prime 44 84 0.0041 T 17-10-2018 IPR023155 Cytochrome c-552/4 VI35_11785 1d4fbceab8485b3633342dbe9022b33c 196 SUPERFAMILY SSF48695 6 185 6.73E-27 T 17-10-2018 IPR036280 Multiheme cytochrome superfamily VI35_11785 1d4fbceab8485b3633342dbe9022b33c 196 Gene3D G3DSA:1.10.1130.10 98 183 2.8E-7 T 17-10-2018 VI35_11785 1d4fbceab8485b3633342dbe9022b33c 196 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 144 180 8.4E-5 T 17-10-2018 IPR010177 Doubled CXXCH motif VI35_06145 7614e7e70603bc49d7785d526b740945 146 Pfam PF13673 Acetyltransferase (GNAT) domain 42 125 2.2E-13 T 17-10-2018 IPR000182 GNAT domain VI35_06145 7614e7e70603bc49d7785d526b740945 146 Gene3D G3DSA:3.40.630.30 1 135 7.7E-23 T 17-10-2018 VI35_06145 7614e7e70603bc49d7785d526b740945 146 SUPERFAMILY SSF55729 1 133 4.79E-22 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_18530 1c4ad2d7db4e3f35aa38a4364593dd0b 313 Gene3D G3DSA:3.40.190.10 23 306 1.2E-70 T 17-10-2018 VI35_18530 1c4ad2d7db4e3f35aa38a4364593dd0b 313 SUPERFAMILY SSF53850 19 306 5.79E-55 T 17-10-2018 VI35_18530 1c4ad2d7db4e3f35aa38a4364593dd0b 313 Gene3D G3DSA:3.40.190.10 107 242 1.2E-70 T 17-10-2018 VI35_18530 1c4ad2d7db4e3f35aa38a4364593dd0b 313 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 9 307 2.2E-66 T 17-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family VI35_18530 1c4ad2d7db4e3f35aa38a4364593dd0b 313 Pfam PF16868 NMT1-like family 23 306 1.4E-62 T 17-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family VI35_09425 c5711363479cd41eeeeeaa9c1f8219b1 174 Pfam PF00583 Acetyltransferase (GNAT) family 12 137 5.8E-13 T 17-10-2018 IPR000182 GNAT domain VI35_09425 c5711363479cd41eeeeeaa9c1f8219b1 174 Gene3D G3DSA:3.40.630.30 1 169 2.7E-28 T 17-10-2018 VI35_09425 c5711363479cd41eeeeeaa9c1f8219b1 174 SUPERFAMILY SSF55729 1 160 2.23E-28 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_16620 f900dd7dc074bb6158870cc4db313826 247 Gene3D G3DSA:3.30.420.40 1 104 2.3E-24 T 17-10-2018 VI35_16620 f900dd7dc074bb6158870cc4db313826 247 Gene3D G3DSA:3.30.420.40 105 244 9.3E-35 T 17-10-2018 VI35_16620 f900dd7dc074bb6158870cc4db313826 247 Pfam PF00480 ROK family 4 165 2.6E-21 T 17-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 VI35_16620 f900dd7dc074bb6158870cc4db313826 247 SUPERFAMILY SSF53067 1 243 1.3E-34 T 17-10-2018 VI35_04050 6c1eea8bc0833e00ae47743399468034 147 Pfam PF09523 Protein of unknown function (DUF2390) 17 111 1.1E-13 T 17-10-2018 IPR012659 Conserved hypothetical protein CHP02444 VI35_12760 eb41fafd0139a9066f00af879247de51 218 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 18 213 1.8E-46 T 17-10-2018 IPR006214 Bax inhibitor 1-related VI35_20440 57a1784d78405a3ba38c25b3c862011b 143 Gene3D G3DSA:1.20.5.340 73 139 2.9E-23 T 17-10-2018 VI35_20440 57a1784d78405a3ba38c25b3c862011b 143 Pfam PF06005 Cell division protein ZapB 75 138 6.5E-22 T 17-10-2018 IPR009252 Cell division protein ZapB GO:0005737|GO:0043093|GO:0090529 VI35_20440 57a1784d78405a3ba38c25b3c862011b 143 Hamap MF_01196 Cell division protein ZapB [zapB]. 75 139 17.382 T 17-10-2018 IPR009252 Cell division protein ZapB GO:0005737|GO:0043093|GO:0090529 VI35_04665 d1318ff02b38b4cc9593ea684ba70c46 338 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 31 89 4.1E-8 T 17-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 VI35_04665 d1318ff02b38b4cc9593ea684ba70c46 338 TIGRFAM TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein 2 332 1.0E-120 T 17-10-2018 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 GO:0008270 VI35_04665 d1318ff02b38b4cc9593ea684ba70c46 338 SMART SM00829 12 331 2.4E-10 T 17-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 VI35_04665 d1318ff02b38b4cc9593ea684ba70c46 338 SUPERFAMILY SSF50129 15 145 1.52E-30 T 17-10-2018 IPR011032 GroES-like superfamily VI35_04665 d1318ff02b38b4cc9593ea684ba70c46 338 SUPERFAMILY SSF51735 117 284 4.24E-34 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_04665 d1318ff02b38b4cc9593ea684ba70c46 338 Gene3D G3DSA:3.90.180.10 25 330 9.1E-98 T 17-10-2018 VI35_04665 d1318ff02b38b4cc9593ea684ba70c46 338 Pfam PF13602 Zinc-binding dehydrogenase 191 331 5.9E-19 T 17-10-2018 VI35_04665 d1318ff02b38b4cc9593ea684ba70c46 338 Gene3D G3DSA:3.40.50.720 128 272 9.1E-98 T 17-10-2018 VI35_15045 1ffe02b5bdd3ed851385a3195e87ecd3 339 Pfam PF01389 OmpA-like transmembrane domain 22 186 3.2E-48 T 17-10-2018 IPR000498 Outer membrane protein OmpA-like, transmembrane domain GO:0009279|GO:0016021 VI35_15045 1ffe02b5bdd3ed851385a3195e87ecd3 339 SUPERFAMILY SSF56925 22 175 3.14E-25 T 17-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VI35_15045 1ffe02b5bdd3ed851385a3195e87ecd3 339 SUPERFAMILY SSF103088 210 331 1.26E-29 T 17-10-2018 IPR036737 OmpA-like domain superfamily VI35_15045 1ffe02b5bdd3ed851385a3195e87ecd3 339 ProSitePatterns PS01068 OmpA-like domain. 254 298 - T 17-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 VI35_15045 1ffe02b5bdd3ed851385a3195e87ecd3 339 PRINTS PR01021 OMPA domain signature 252 267 3.1E-19 T 17-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VI35_15045 1ffe02b5bdd3ed851385a3195e87ecd3 339 PRINTS PR01021 OMPA domain signature 267 283 3.1E-19 T 17-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VI35_15045 1ffe02b5bdd3ed851385a3195e87ecd3 339 PRINTS PR01021 OMPA domain signature 220 242 3.1E-19 T 17-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VI35_15045 1ffe02b5bdd3ed851385a3195e87ecd3 339 Gene3D G3DSA:3.30.1330.60 196 339 5.4E-48 T 17-10-2018 IPR036737 OmpA-like domain superfamily VI35_15045 1ffe02b5bdd3ed851385a3195e87ecd3 339 Gene3D G3DSA:2.40.160.20 21 182 1.3E-29 T 17-10-2018 VI35_15045 1ffe02b5bdd3ed851385a3195e87ecd3 339 Pfam PF00691 OmpA family 219 314 2.3E-18 T 17-10-2018 IPR006665 OmpA-like domain VI35_02495 f838a7f0d0efc3668cf1edf309101c8a 152 SUPERFAMILY SSF54909 62 147 2.68E-17 T 17-10-2018 IPR011008 Dimeric alpha-beta barrel VI35_02495 f838a7f0d0efc3668cf1edf309101c8a 152 Gene3D G3DSA:1.10.10.10 2 54 6.7E-21 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_02495 f838a7f0d0efc3668cf1edf309101c8a 152 SMART SM00344 2 111 1.8E-36 T 17-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 VI35_02495 f838a7f0d0efc3668cf1edf309101c8a 152 ProSitePatterns PS00519 AsnC-type HTH domain signature. 20 46 - T 17-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site VI35_02495 f838a7f0d0efc3668cf1edf309101c8a 152 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 2 18 7.7E-14 T 17-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VI35_02495 f838a7f0d0efc3668cf1edf309101c8a 152 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 29 48 7.7E-14 T 17-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VI35_02495 f838a7f0d0efc3668cf1edf309101c8a 152 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 18 29 7.7E-14 T 17-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VI35_02495 f838a7f0d0efc3668cf1edf309101c8a 152 Pfam PF13404 AsnC-type helix-turn-helix domain 3 43 2.7E-15 T 17-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VI35_02495 f838a7f0d0efc3668cf1edf309101c8a 152 Pfam PF01037 Lrp/AsnC ligand binding domain 68 141 1.0E-18 T 17-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain VI35_02495 f838a7f0d0efc3668cf1edf309101c8a 152 Gene3D G3DSA:3.30.70.920 55 139 2.3E-19 T 17-10-2018 VI35_02495 f838a7f0d0efc3668cf1edf309101c8a 152 SUPERFAMILY SSF46785 3 62 6.34E-15 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_06985 da50d24cad8ff1e5d4900cc5201f035d 195 PIRSF PIRSF000709 1 191 2.6E-12 T 17-10-2018 VI35_06985 da50d24cad8ff1e5d4900cc5201f035d 195 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 5 177 8.9E-38 T 17-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 VI35_06985 da50d24cad8ff1e5d4900cc5201f035d 195 SMART SM00855 4 160 7.0E-23 T 17-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 VI35_06985 da50d24cad8ff1e5d4900cc5201f035d 195 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 7 16 - T 17-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 VI35_06985 da50d24cad8ff1e5d4900cc5201f035d 195 Gene3D G3DSA:3.40.50.1240 1 187 1.3E-43 T 17-10-2018 IPR029033 Histidine phosphatase superfamily VI35_06985 da50d24cad8ff1e5d4900cc5201f035d 195 SUPERFAMILY SSF53254 1 185 1.57E-44 T 17-10-2018 IPR029033 Histidine phosphatase superfamily VI35_13095 02548a43400fda742ba44edc1cd51364 371 ProDom PD041438 LIPOPROTEIN YAIW PRECURSOR SIGNAL MEMBRANE OUTER LIPOPROTEIN ECS0428 XAC0592 SECRETED 36 364 1.0E-125 T 17-10-2018 IPR011673 Protein of unknown function DUF1615 VI35_13095 02548a43400fda742ba44edc1cd51364 371 Pfam PF07759 Protein of unknown function (DUF1615) 52 365 1.7E-140 T 17-10-2018 IPR011673 Protein of unknown function DUF1615 VI35_01465 39c85856f9e9f709688a947520adb4f6 359 Pfam PF01594 AI-2E family transporter 14 341 4.7E-34 T 17-10-2018 IPR002549 Transmembrane protein TqsA-like VI35_09595 f715bef2c70e387e7907cc0bafce0d6d 235 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 34 218 5.0E-67 T 17-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 VI35_09595 f715bef2c70e387e7907cc0bafce0d6d 235 Gene3D G3DSA:3.40.630.70 64 235 2.1E-64 T 17-10-2018 VI35_09595 f715bef2c70e387e7907cc0bafce0d6d 235 SUPERFAMILY SSF55729 6 232 4.56E-87 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_09595 f715bef2c70e387e7907cc0bafce0d6d 235 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 235 94.038 T 17-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 VI35_09595 f715bef2c70e387e7907cc0bafce0d6d 235 Gene3D G3DSA:2.30.210.20 4 63 1.8E-25 T 17-10-2018 VI35_09595 f715bef2c70e387e7907cc0bafce0d6d 235 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 37 206 8.2E-68 T 17-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 VI35_13455 c28b7be550498e790078f5ca9d716b90 247 SMART SM00382 34 220 2.0E-18 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_13455 c28b7be550498e790078f5ca9d716b90 247 SUPERFAMILY SSF52540 8 242 1.04E-80 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_13455 c28b7be550498e790078f5ca9d716b90 247 Pfam PF00005 ABC transporter 25 172 1.4E-37 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_13455 c28b7be550498e790078f5ca9d716b90 247 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_13455 c28b7be550498e790078f5ca9d716b90 247 PIRSF PIRSF039085 5 247 5.6E-109 T 17-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 VI35_13455 c28b7be550498e790078f5ca9d716b90 247 Gene3D G3DSA:3.40.50.300 5 247 2.1E-77 T 17-10-2018 VI35_04135 c25bed7b0efdac9c9a0e44b380b50b17 249 Gene3D G3DSA:3.10.20.700 97 151 1.3E-10 T 17-10-2018 VI35_04135 c25bed7b0efdac9c9a0e44b380b50b17 249 Pfam PF06251 Capsule biosynthesis GfcC 21 248 6.2E-65 T 17-10-2018 IPR010425 Domain of unknown function DUF1017 VI35_04135 c25bed7b0efdac9c9a0e44b380b50b17 249 Gene3D G3DSA:3.10.560.10 152 221 2.5E-24 T 17-10-2018 VI35_18820 22bae6197b44dd057cd4a21861fd8804 78 Pfam PF13670 Peptidase propeptide and YPEB domain 1 75 5.9E-27 T 17-10-2018 IPR025711 PepSY domain VI35_15520 4ed114aa2fb8c3af6183a2836d373e7d 285 Pfam PF01148 Cytidylyltransferase family 3 278 1.0E-64 T 17-10-2018 VI35_15520 4ed114aa2fb8c3af6183a2836d373e7d 285 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 239 265 - T 17-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 VI35_15215 757703c240d5e320c5009c6ac29b78ab 147 Gene3D G3DSA:3.10.180.10 12 146 3.4E-32 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_15215 757703c240d5e320c5009c6ac29b78ab 147 SUPERFAMILY SSF54593 14 144 2.82E-24 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_15215 757703c240d5e320c5009c6ac29b78ab 147 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 16 139 1.0E-12 T 17-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VI35_00035 4656489dc6de55599bd67a1b9937f7a8 137 SUPERFAMILY SSF49764 31 136 3.84E-21 T 17-10-2018 IPR008978 HSP20-like chaperone VI35_00035 4656489dc6de55599bd67a1b9937f7a8 137 Gene3D G3DSA:2.60.40.790 33 136 2.2E-20 T 17-10-2018 IPR008978 HSP20-like chaperone VI35_00035 4656489dc6de55599bd67a1b9937f7a8 137 Pfam PF00011 Hsp20/alpha crystallin family 44 136 1.0E-17 T 17-10-2018 IPR002068 Alpha crystallin/Hsp20 domain VI35_18545 8ac50ebb7843c5eb5475be1fb90d18b9 254 SMART SM00382 29 196 2.9E-11 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_18545 8ac50ebb7843c5eb5475be1fb90d18b9 254 Gene3D G3DSA:3.40.50.300 1 225 3.9E-58 T 17-10-2018 VI35_18545 8ac50ebb7843c5eb5475be1fb90d18b9 254 ProSitePatterns PS00211 ABC transporters family signature. 120 134 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_18545 8ac50ebb7843c5eb5475be1fb90d18b9 254 Pfam PF00005 ABC transporter 20 147 7.4E-30 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_18545 8ac50ebb7843c5eb5475be1fb90d18b9 254 SUPERFAMILY SSF52540 4 214 8.85E-54 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_13615 cf7a6a0d153cacb99d7b7cbb6de92670 366 SMART SM00047 193 352 1.2E-34 T 17-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 VI35_13615 cf7a6a0d153cacb99d7b7cbb6de92670 366 Gene3D G3DSA:2.10.70.40 237 289 9.0E-46 T 17-10-2018 VI35_13615 cf7a6a0d153cacb99d7b7cbb6de92670 366 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 209 344 1.4E-20 T 17-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 VI35_13615 cf7a6a0d153cacb99d7b7cbb6de92670 366 TIGRFAM TIGR02541 flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ 15 345 8.5E-84 T 17-10-2018 IPR013377 Peptidoglycan hydrolase FlgJ GO:0016798|GO:0044780 VI35_13615 cf7a6a0d153cacb99d7b7cbb6de92670 366 Gene3D G3DSA:1.10.530.10 203 342 9.0E-46 T 17-10-2018 VI35_13615 cf7a6a0d153cacb99d7b7cbb6de92670 366 Pfam PF10135 Rod binding protein 55 105 2.6E-12 T 17-10-2018 IPR019301 Flagellar protein FlgJ, N-terminal VI35_13615 cf7a6a0d153cacb99d7b7cbb6de92670 366 SUPERFAMILY SSF53955 150 257 2.39E-6 T 17-10-2018 IPR023346 Lysozyme-like domain superfamily VI35_18015 5ae44d63a1ae250f0b39cca9346b0225 156 Pfam PF02863 Arginine repressor, C-terminal domain 82 145 2.8E-24 T 17-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 VI35_18015 5ae44d63a1ae250f0b39cca9346b0225 156 Gene3D G3DSA:1.10.10.10 1 74 4.2E-33 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_18015 5ae44d63a1ae250f0b39cca9346b0225 156 SUPERFAMILY SSF46785 3 77 2.81E-20 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_18015 5ae44d63a1ae250f0b39cca9346b0225 156 PRINTS PR01467 Bacterial arginine repressor signature 121 136 1.6E-24 T 17-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 VI35_18015 5ae44d63a1ae250f0b39cca9346b0225 156 PRINTS PR01467 Bacterial arginine repressor signature 42 57 1.6E-24 T 17-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 VI35_18015 5ae44d63a1ae250f0b39cca9346b0225 156 PRINTS PR01467 Bacterial arginine repressor signature 25 38 1.6E-24 T 17-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 VI35_18015 5ae44d63a1ae250f0b39cca9346b0225 156 PRINTS PR01467 Bacterial arginine repressor signature 90 103 1.6E-24 T 17-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 VI35_18015 5ae44d63a1ae250f0b39cca9346b0225 156 SUPERFAMILY SSF55252 82 145 1.57E-20 T 17-10-2018 IPR036251 Arginine repressor, C-terminal domain superfamily GO:0034618|GO:0051259 VI35_18015 5ae44d63a1ae250f0b39cca9346b0225 156 Pfam PF01316 Arginine repressor, DNA binding domain 6 73 6.8E-22 T 17-10-2018 IPR020900 Arginine repressor, DNA-binding domain GO:0003700|GO:0006355|GO:0006525 VI35_18015 5ae44d63a1ae250f0b39cca9346b0225 156 TIGRFAM TIGR01529 argR_whole: arginine repressor 9 150 3.2E-45 T 17-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 VI35_18015 5ae44d63a1ae250f0b39cca9346b0225 156 ProDom PD007402 ARGININE REPRESSOR TRANSCRIPTION BIOSYNTHESIS DNA-BINDING REGULATION AMINO-ACID ARGR TRANSCRIPTIONAL FAMILY 89 153 1.0E-21 T 17-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 VI35_18015 5ae44d63a1ae250f0b39cca9346b0225 156 Gene3D G3DSA:3.30.1360.40 75 155 2.6E-32 T 17-10-2018 VI35_18015 5ae44d63a1ae250f0b39cca9346b0225 156 Hamap MF_00173 Arginine repressor [argR]. 1 155 60.79 T 17-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 VI35_16885 fbbde0536321912f4835a9a9846535b2 213 SUPERFAMILY SSF55895 26 196 1.19E-33 T 17-10-2018 IPR036430 Ribonuclease T2-like superfamily GO:0003723|GO:0033897 Reactome: R-HSA-6798695 VI35_16885 fbbde0536321912f4835a9a9846535b2 213 ProSitePatterns PS00531 Ribonuclease T2 family histidine active site 2. 96 107 - T 17-10-2018 IPR033130 Ribonuclease T2, His active site 2 Reactome: R-HSA-6798695 VI35_16885 fbbde0536321912f4835a9a9846535b2 213 Gene3D G3DSA:3.90.730.10 21 210 5.1E-32 T 17-10-2018 IPR036430 Ribonuclease T2-like superfamily GO:0003723|GO:0033897 Reactome: R-HSA-6798695 VI35_16885 fbbde0536321912f4835a9a9846535b2 213 ProSitePatterns PS00530 Ribonuclease T2 family histidine active site 1. 57 64 - T 17-10-2018 IPR018188 Ribonuclease T2, His active site 1 GO:0003723|GO:0033897 Reactome: R-HSA-6798695 VI35_16885 fbbde0536321912f4835a9a9846535b2 213 Pfam PF00445 Ribonuclease T2 family 30 190 4.7E-17 T 17-10-2018 IPR001568 Ribonuclease T2-like GO:0003723|GO:0033897 Reactome: R-HSA-6798695 VI35_20090 0388d5cd8ccea3a80be6d3e82f930f18 273 Hamap MF_01058 Der GTPase-activating protein YihI [yihI]. 81 260 16.271 T 17-10-2018 IPR007336 Der GTPase activator GO:0005096 VI35_20090 0388d5cd8ccea3a80be6d3e82f930f18 273 Pfam PF04220 Der GTPase activator (YihI) 89 235 7.5E-48 T 17-10-2018 IPR007336 Der GTPase activator GO:0005096 VI35_17655 f9a54c4f23d75fa17c918a14244aea3a 151 SUPERFAMILY SSF56524 27 126 1.7E-13 T 17-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 VI35_00740 141be107fa0e478bd39dae841645599d 148 Pfam PF06127 Protein of unknown function (DUF962) 1 143 2.5E-22 T 17-10-2018 IPR009305 Protein of unknown function DUF962 VI35_14670 6f9d17a65b4644553ae26bf058873070 128 Pfam PF04343 Protein of unknown function, DUF488 10 119 1.0E-14 T 17-10-2018 IPR007438 Protein of unknown function DUF488 VI35_02885 158f34442da58fbeb858936416a6f6fc 252 Pfam PF01203 Type II secretion system (T2SS), protein N 39 247 7.5E-53 T 17-10-2018 IPR022792 Type II secretion system, protein N VI35_02885 158f34442da58fbeb858936416a6f6fc 252 ProSitePatterns PS01142 Bacterial type II secretion system protein N signature. 46 68 - T 17-10-2018 IPR000645 Type II secretion system protein N, conserved site GO:0008565|GO:0015627|GO:0015628 VI35_13895 d06bb4b0774ea1aa8916c1455a4cc9ae 355 Gene3D G3DSA:3.40.50.720 2 342 7.0E-126 T 17-10-2018 VI35_13895 d06bb4b0774ea1aa8916c1455a4cc9ae 355 SUPERFAMILY SSF51735 1 350 2.94E-88 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_13895 d06bb4b0774ea1aa8916c1455a4cc9ae 355 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 342 2.0E-88 T 17-10-2018 IPR016040 NAD(P)-binding domain VI35_13895 d06bb4b0774ea1aa8916c1455a4cc9ae 355 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 2 350 6.4E-145 T 17-10-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 VI35_13895 d06bb4b0774ea1aa8916c1455a4cc9ae 355 Gene3D G3DSA:3.90.25.10 209 349 7.0E-126 T 17-10-2018 VI35_18185 e77d2765fc36e8f33478bd8adea436ad 447 SUPERFAMILY SSF52540 76 183 2.61E-5 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_18185 e77d2765fc36e8f33478bd8adea436ad 447 Pfam PF06048 Domain of unknown function (DUF927) 18 161 5.0E-47 T 17-10-2018 IPR009270 Domain of unknown function DUF927 VI35_09845 e9242f53768342ab482384e1b7204e0e 71 Pfam PF06526 Protein of unknown function (DUF1107) 4 66 1.5E-27 T 17-10-2018 IPR009491 Protein of unknown function DUF1107 VI35_09845 e9242f53768342ab482384e1b7204e0e 71 Gene3D G3DSA:3.30.1910.10 4 67 3.8E-29 T 17-10-2018 VI35_09845 e9242f53768342ab482384e1b7204e0e 71 ProDom PD055267 YTFK Y0656 CYTOPLASMIC VP2585 VV0426 ESCHERICHIA S4534 VC2473 YPO3527 COLI 4 66 2.0E-14 T 17-10-2018 IPR009491 Protein of unknown function DUF1107 VI35_02620 4fad37f078b4b60db960bf11ba24b130 271 Gene3D G3DSA:1.10.3720.10 11 266 1.4E-46 T 17-10-2018 IPR035906 MetI-like superfamily VI35_02620 4fad37f078b4b60db960bf11ba24b130 271 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 258 3.0E-13 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_02620 4fad37f078b4b60db960bf11ba24b130 271 SUPERFAMILY SSF161098 12 260 1.83E-49 T 17-10-2018 IPR035906 MetI-like superfamily VI35_05860 281d81261275b852f55fb542c22ff482 354 PIRSF PIRSF005508 1 352 5.5E-117 T 17-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 VI35_05860 281d81261275b852f55fb542c22ff482 354 Gene3D G3DSA:1.20.1530.20 8 342 2.3E-18 T 17-10-2018 IPR038770 Sodium/solute symporter superfamily VI35_05860 281d81261275b852f55fb542c22ff482 354 TIGRFAM TIGR00832 acr3: arsenical-resistance protein 14 340 2.0E-120 T 17-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 VI35_05860 281d81261275b852f55fb542c22ff482 354 Pfam PF01758 Sodium Bile acid symporter family 59 253 1.1E-37 T 17-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 VI35_10070 c7b55eb1967631de1816c7c234ae5600 335 Pfam PF02653 Branched-chain amino acid transport system / permease component 35 302 1.5E-43 T 17-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 VI35_18120 621c900e91c0545e99e0464efa7284ce 183 Pfam PF02325 YGGT family 9 78 7.8E-20 T 17-10-2018 IPR003425 CCB3/YggT GO:0016020 VI35_18120 621c900e91c0545e99e0464efa7284ce 183 Pfam PF02325 YGGT family 107 171 2.9E-19 T 17-10-2018 IPR003425 CCB3/YggT GO:0016020 VI35_17500 ac7aa6b730761bc5df23e404b651dab4 741 Pfam PF03170 Bacterial cellulose synthase subunit 35 644 9.9E-196 T 17-10-2018 IPR018513 Cellulose synthase BcsB, bacterial GO:0006011|GO:0016020 VI35_17500 ac7aa6b730761bc5df23e404b651dab4 741 PRINTS PR01440 Cellulose synthase subunit B signature 196 219 4.9E-31 T 17-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 VI35_17500 ac7aa6b730761bc5df23e404b651dab4 741 PRINTS PR01440 Cellulose synthase subunit B signature 494 513 4.9E-31 T 17-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 VI35_17500 ac7aa6b730761bc5df23e404b651dab4 741 PRINTS PR01440 Cellulose synthase subunit B signature 531 551 4.9E-31 T 17-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 VI35_17500 ac7aa6b730761bc5df23e404b651dab4 741 PRINTS PR01440 Cellulose synthase subunit B signature 154 175 4.9E-31 T 17-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 VI35_17500 ac7aa6b730761bc5df23e404b651dab4 741 PRINTS PR01440 Cellulose synthase subunit B signature 277 298 4.9E-31 T 17-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 VI35_17500 ac7aa6b730761bc5df23e404b651dab4 741 PRINTS PR01440 Cellulose synthase subunit B signature 64 85 4.9E-31 T 17-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 VI35_17500 ac7aa6b730761bc5df23e404b651dab4 741 PRINTS PR01440 Cellulose synthase subunit B signature 360 381 4.9E-31 T 17-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 VI35_17500 ac7aa6b730761bc5df23e404b651dab4 741 Gene3D G3DSA:2.60.120.260 326 485 4.5E-17 T 17-10-2018 IPR008979 Galactose-binding-like domain superfamily VI35_17500 ac7aa6b730761bc5df23e404b651dab4 741 Gene3D G3DSA:2.60.120.260 33 168 3.3E-26 T 17-10-2018 IPR008979 Galactose-binding-like domain superfamily VI35_15565 390439879e25edaf5c8555f70a077ef0 127 Pfam PF11944 Protein of unknown function (DUF3461) 1 127 1.0E-57 T 17-10-2018 IPR020911 Uncharacterised protein family UPF0325 VI35_15565 390439879e25edaf5c8555f70a077ef0 127 Hamap MF_01519 UPF0325 protein YaeH [yaeH]. 1 127 31.099 T 17-10-2018 IPR020911 Uncharacterised protein family UPF0325 VI35_15565 390439879e25edaf5c8555f70a077ef0 127 ProDom PD080106 UPF0325 YAEH STRUCTURAL ECA1027 VV11856 YPTB3007 PBPRA2971 VV2560 VF1965 VC2264 1 127 2.0E-44 T 17-10-2018 IPR020911 Uncharacterised protein family UPF0325 VI35_10275 6b2516d0ed747cc6423a0f80036f1a7b 188 Gene3D G3DSA:1.10.10.10 32 178 9.0E-26 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_10275 6b2516d0ed747cc6423a0f80036f1a7b 188 SMART SM00347 62 161 4.3E-9 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_10275 6b2516d0ed747cc6423a0f80036f1a7b 188 SUPERFAMILY SSF46785 41 178 4.2E-23 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_10275 6b2516d0ed747cc6423a0f80036f1a7b 188 Pfam PF12802 MarR family 68 125 8.5E-9 T 17-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VI35_09225 c82b8270a6ad9ea85b60f67605c0b37b 334 Gene3D G3DSA:3.20.20.80 17 331 8.8E-108 T 17-10-2018 VI35_09225 c82b8270a6ad9ea85b60f67605c0b37b 334 Pfam PF07745 Glycosyl hydrolase family 53 25 329 4.2E-95 T 17-10-2018 IPR011683 Glycosyl hydrolase family 53 GO:0015926 VI35_09225 c82b8270a6ad9ea85b60f67605c0b37b 334 SUPERFAMILY SSF51445 22 331 3.98E-82 T 17-10-2018 IPR017853 Glycoside hydrolase superfamily VI35_14105 40594f2781f5ae03dc330a2ab16ff81e 276 SUPERFAMILY SSF161098 76 259 1.03E-34 T 17-10-2018 IPR035906 MetI-like superfamily VI35_14105 40594f2781f5ae03dc330a2ab16ff81e 276 Gene3D G3DSA:1.10.3720.10 70 269 1.3E-27 T 17-10-2018 IPR035906 MetI-like superfamily VI35_14105 40594f2781f5ae03dc330a2ab16ff81e 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 269 3.2E-24 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_02555 7011e489e4a974f54bf38e9e044a1bec 100 Gene3D G3DSA:1.10.10.1100 33 89 1.7E-21 T 17-10-2018 VI35_02555 7011e489e4a974f54bf38e9e044a1bec 100 Pfam PF04324 BFD-like [2Fe-2S] binding domain 34 82 7.8E-14 T 17-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain VI35_02145 848031c1edf17dedd3800389da3d2f08 286 Gene3D G3DSA:1.20.1330.10 45 182 1.2E-54 T 17-10-2018 VI35_02145 848031c1edf17dedd3800389da3d2f08 286 Gene3D G3DSA:1.10.8.410 233 286 1.6E-17 T 17-10-2018 VI35_02145 848031c1edf17dedd3800389da3d2f08 286 SUPERFAMILY SSF64518 1 286 6.93E-73 T 17-10-2018 VI35_02145 848031c1edf17dedd3800389da3d2f08 286 PRINTS PR00207 Flagellin signature 76 95 6.7E-21 T 17-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VI35_02145 848031c1edf17dedd3800389da3d2f08 286 PRINTS PR00207 Flagellin signature 37 54 6.7E-21 T 17-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VI35_02145 848031c1edf17dedd3800389da3d2f08 286 PRINTS PR00207 Flagellin signature 111 134 6.7E-21 T 17-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VI35_02145 848031c1edf17dedd3800389da3d2f08 286 Pfam PF00700 Bacterial flagellin C-terminal helical region 201 285 4.0E-25 T 17-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VI35_02145 848031c1edf17dedd3800389da3d2f08 286 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 140 3.1E-35 T 17-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VI35_02145 848031c1edf17dedd3800389da3d2f08 286 Gene3D G3DSA:1.20.58.1830 5 33 1.2E-54 T 17-10-2018 VI35_00695 18c8095e5d827a0106a896295512ac3f 133 Gene3D G3DSA:3.10.180.10 1 130 4.4E-24 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_00695 18c8095e5d827a0106a896295512ac3f 133 SUPERFAMILY SSF54593 1 132 2.4E-19 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_00695 18c8095e5d827a0106a896295512ac3f 133 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 4 98 8.9E-12 T 17-10-2018 VI35_12230 dd708747ff9e2e592c26e83fb7b5de9c 102 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 10 97 2.2E-22 T 17-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like VI35_12230 dd708747ff9e2e592c26e83fb7b5de9c 102 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 4 102 19.594 T 17-10-2018 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 VI35_04035 aa9e56e3c91fdcc4f53f4998ac5702a6 199 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 198 27.206 T 17-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 VI35_04035 aa9e56e3c91fdcc4f53f4998ac5702a6 199 Gene3D G3DSA:3.40.50.360 2 197 1.6E-51 T 17-10-2018 IPR029039 Flavoprotein-like superfamily VI35_04035 aa9e56e3c91fdcc4f53f4998ac5702a6 199 Pfam PF02525 Flavodoxin-like fold 3 194 5.9E-38 T 17-10-2018 IPR003680 Flavodoxin-like fold VI35_04035 aa9e56e3c91fdcc4f53f4998ac5702a6 199 SUPERFAMILY SSF52218 1 197 2.48E-46 T 17-10-2018 IPR029039 Flavoprotein-like superfamily VI35_11105 72c630fd365deec8c224d79c5d9d2d18 327 SUPERFAMILY SSF55681 92 327 1.18E-82 T 17-10-2018 VI35_11105 72c630fd365deec8c224d79c5d9d2d18 327 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 20 87 3.9E-26 T 17-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 VI35_11105 72c630fd365deec8c224d79c5d9d2d18 327 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 39 327 2.0E-115 T 17-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 VI35_11105 72c630fd365deec8c224d79c5d9d2d18 327 SUPERFAMILY SSF46589 14 99 5.75E-23 T 17-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 VI35_11105 72c630fd365deec8c224d79c5d9d2d18 327 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 8 326 49.537 T 17-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 VI35_11105 72c630fd365deec8c224d79c5d9d2d18 327 Pfam PF01409 tRNA synthetases class II core domain (F) 92 326 5.9E-107 T 17-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 VI35_11105 72c630fd365deec8c224d79c5d9d2d18 327 Gene3D G3DSA:3.30.930.10 7 327 1.2E-124 T 17-10-2018 VI35_03610 e84de488bb2b688ec24fb5dc6b19c39f 204 SUPERFAMILY SSF48498 89 201 1.47E-16 T 17-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VI35_03610 e84de488bb2b688ec24fb5dc6b19c39f 204 Gene3D G3DSA:1.10.357.10 4 201 1.9E-51 T 17-10-2018 VI35_03610 e84de488bb2b688ec24fb5dc6b19c39f 204 SUPERFAMILY SSF46689 8 92 1.33E-17 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_03610 e84de488bb2b688ec24fb5dc6b19c39f 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 35 1.3E-6 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_03610 e84de488bb2b688ec24fb5dc6b19c39f 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 66 1.3E-6 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_03610 e84de488bb2b688ec24fb5dc6b19c39f 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 68 8.7E-13 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_04000 6bb4895da77187ebdad05910abd404dd 502 TIGRFAM TIGR02121 Na_Pro_sym: sodium/proline symporter 6 490 2.3E-226 T 17-10-2018 IPR011851 Sodium/proline symporter GO:0005298|GO:0006814|GO:0015824|GO:0016021|GO:0031402 VI35_04000 6bb4895da77187ebdad05910abd404dd 502 Pfam PF00474 Sodium:solute symporter family 35 437 1.4E-133 T 17-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 VI35_04000 6bb4895da77187ebdad05910abd404dd 502 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 419 439 - T 17-10-2018 IPR018212 Sodium/solute symporter, conserved site VI35_04000 6bb4895da77187ebdad05910abd404dd 502 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 157 182 - T 17-10-2018 IPR018212 Sodium/solute symporter, conserved site VI35_04000 6bb4895da77187ebdad05910abd404dd 502 Gene3D G3DSA:1.20.1730.10 23 500 3.8E-96 T 17-10-2018 IPR038377 Sodium/glucose symporter superfamily VI35_04000 6bb4895da77187ebdad05910abd404dd 502 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 35 437 1.6E-120 T 17-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 VI35_05015 ec7bce908b83a1efd1d39d7ddc4b0b49 162 Pfam PF00583 Acetyltransferase (GNAT) family 67 150 1.1E-13 T 17-10-2018 IPR000182 GNAT domain VI35_05015 ec7bce908b83a1efd1d39d7ddc4b0b49 162 SUPERFAMILY SSF55729 5 155 3.6E-27 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_05015 ec7bce908b83a1efd1d39d7ddc4b0b49 162 Gene3D G3DSA:3.40.630.30 5 161 5.1E-34 T 17-10-2018 VI35_00465 e8f03ac0c7ca707e8dc2e12a4fddf2bd 422 Gene3D G3DSA:3.40.50.11720 39 209 1.7E-45 T 17-10-2018 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 VI35_00465 e8f03ac0c7ca707e8dc2e12a4fddf2bd 422 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 35 211 7.8E-60 T 17-10-2018 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 VI35_00465 e8f03ac0c7ca707e8dc2e12a4fddf2bd 422 Pfam PF00534 Glycosyl transferases group 1 301 398 3.5E-7 T 17-10-2018 IPR001296 Glycosyl transferase, family 1 VI35_00465 e8f03ac0c7ca707e8dc2e12a4fddf2bd 422 SUPERFAMILY SSF53756 59 414 1.45E-18 T 17-10-2018 VI35_00465 e8f03ac0c7ca707e8dc2e12a4fddf2bd 422 Gene3D G3DSA:3.40.50.2000 216 401 2.5E-65 T 17-10-2018 VI35_16050 a1b830edd47e99351847415cb45992fc 316 Gene3D G3DSA:3.90.25.10 170 304 4.7E-119 T 17-10-2018 VI35_16050 a1b830edd47e99351847415cb45992fc 316 Gene3D G3DSA:3.40.50.720 6 295 4.7E-119 T 17-10-2018 VI35_16050 a1b830edd47e99351847415cb45992fc 316 SUPERFAMILY SSF51735 1 309 2.57E-50 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_16050 a1b830edd47e99351847415cb45992fc 316 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 198 1.8E-25 T 17-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 VI35_06035 089c24fa6979b2ae55723a5ca871ac60 68 TIGRFAM TIGR03141 cytochro_ccmD: heme exporter protein CcmD 10 56 7.3E-19 T 17-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 VI35_06035 089c24fa6979b2ae55723a5ca871ac60 68 Pfam PF04995 Heme exporter protein D (CcmD) 13 56 2.7E-17 T 17-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 VI35_13490 87f124c8158b2bdab2ca9a78f544a06d 272 ProSitePatterns PS00211 ABC transporters family signature. 169 183 - T 17-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VI35_13490 87f124c8158b2bdab2ca9a78f544a06d 272 SMART SM00382 50 253 2.0E-16 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_13490 87f124c8158b2bdab2ca9a78f544a06d 272 Gene3D G3DSA:3.40.50.300 21 269 3.8E-67 T 17-10-2018 VI35_13490 87f124c8158b2bdab2ca9a78f544a06d 272 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 26 272 8.4E-128 T 17-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 VI35_13490 87f124c8158b2bdab2ca9a78f544a06d 272 SUPERFAMILY SSF52540 22 258 4.5E-62 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_13490 87f124c8158b2bdab2ca9a78f544a06d 272 Pfam PF00005 ABC transporter 42 197 5.2E-33 T 17-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VI35_02245 ff2fda8c857e598acfa7ebae4ead8610 394 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 339 363 - T 17-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VI35_02245 ff2fda8c857e598acfa7ebae4ead8610 394 Pfam PF01098 Cell cycle protein 28 381 2.8E-111 T 17-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VI35_02245 ff2fda8c857e598acfa7ebae4ead8610 394 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 25 380 1.7E-126 T 17-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VI35_02245 ff2fda8c857e598acfa7ebae4ead8610 394 Hamap MF_00913 Probable peptidoglycan glycosyltransferase FtsW [ftsW]. 23 390 42.005 T 17-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VI35_18625 ca5ff84e5c259e250351b3fea90d416e 136 Gene3D G3DSA:1.10.238.10 29 126 1.1E-10 T 17-10-2018 VI35_18625 ca5ff84e5c259e250351b3fea90d416e 136 Pfam PF13202 EF hand 102 116 0.0035 T 17-10-2018 IPR002048 EF-hand domain GO:0005509 VI35_18625 ca5ff84e5c259e250351b3fea90d416e 136 SUPERFAMILY SSF47473 37 122 8.98E-8 T 17-10-2018 IPR011992 EF-hand domain pair VI35_10255 116ab822b00e62c812f5c740f4d5735a 296 SUPERFAMILY SSF103481 189 287 4.45E-12 T 17-10-2018 VI35_10255 116ab822b00e62c812f5c740f4d5735a 296 Pfam PF00892 EamA-like transporter family 158 284 3.4E-9 T 17-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VI35_10255 116ab822b00e62c812f5c740f4d5735a 296 Pfam PF00892 EamA-like transporter family 12 146 1.3E-9 T 17-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VI35_10255 116ab822b00e62c812f5c740f4d5735a 296 SUPERFAMILY SSF103481 48 148 5.1E-10 T 17-10-2018 VI35_07420 ab2293d9642cb0827d2e7692d519ce93 462 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 11 110 7.2E-13 T 17-10-2018 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 VI35_07420 ab2293d9642cb0827d2e7692d519ce93 462 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 215 447 2.3E-42 T 17-10-2018 IPR010809 Flagellar hook-associated protein 2, C-terminal GO:0007155|GO:0009288 VI35_07420 ab2293d9642cb0827d2e7692d519ce93 462 Pfam PF07196 Flagellin hook IN motif 130 184 1.6E-12 T 17-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 VI35_16060 23e6e3c6a35b178339177e4af4a86225 296 SUPERFAMILY SSF103481 182 282 3.01E-12 T 17-10-2018 VI35_16060 23e6e3c6a35b178339177e4af4a86225 296 Pfam PF00892 EamA-like transporter family 147 279 1.5E-20 T 17-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VI35_16060 23e6e3c6a35b178339177e4af4a86225 296 Pfam PF00892 EamA-like transporter family 13 134 3.0E-7 T 17-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VI35_16060 23e6e3c6a35b178339177e4af4a86225 296 SUPERFAMILY SSF103481 38 138 1.83E-8 T 17-10-2018 VI35_09205 1f66ea10d115227b7af85ef5f0339bc7 346 Gene3D G3DSA:3.30.428.10 175 346 3.0E-69 T 17-10-2018 IPR036265 HIT-like superfamily VI35_09205 1f66ea10d115227b7af85ef5f0339bc7 346 ProSitePatterns PS00117 Galactose-1-phosphate uridyl transferase family 1 active site signature. 150 167 - T 17-10-2018 IPR019779 Galactose-1-phosphate uridyl transferase, class I His-active site KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 VI35_09205 1f66ea10d115227b7af85ef5f0339bc7 346 Pfam PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain 2 175 5.6E-69 T 17-10-2018 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 VI35_09205 1f66ea10d115227b7af85ef5f0339bc7 346 PIRSF PIRSF000808 1 340 2.0E-118 T 17-10-2018 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0008108|GO:0008270|GO:0033499 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 VI35_09205 1f66ea10d115227b7af85ef5f0339bc7 346 TIGRFAM TIGR00209 galT_1: galactose-1-phosphate uridylyltransferase 2 345 1.9E-193 T 17-10-2018 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0008108|GO:0008270|GO:0033499 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 VI35_09205 1f66ea10d115227b7af85ef5f0339bc7 346 SUPERFAMILY SSF54197 178 343 3.57E-56 T 17-10-2018 IPR036265 HIT-like superfamily VI35_09205 1f66ea10d115227b7af85ef5f0339bc7 346 Pfam PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain 182 344 6.3E-68 T 17-10-2018 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 VI35_09205 1f66ea10d115227b7af85ef5f0339bc7 346 SUPERFAMILY SSF54197 2 176 1.9E-71 T 17-10-2018 IPR036265 HIT-like superfamily VI35_09205 1f66ea10d115227b7af85ef5f0339bc7 346 Gene3D G3DSA:3.30.428.10 45 174 7.3E-55 T 17-10-2018 IPR036265 HIT-like superfamily VI35_19530 f72a3797d3ac581686e0493466b94fcc 312 Pfam PF00491 Arginase family 42 310 5.5E-62 T 17-10-2018 IPR006035 Ureohydrolase GO:0046872 VI35_19530 f72a3797d3ac581686e0493466b94fcc 312 Hamap MF_00737 Formimidoylglutamase [hutG]. 7 312 42.927 T 17-10-2018 IPR005923 Formiminoglutamase GO:0019556|GO:0050415 KEGG: 00340+3.5.3.8 VI35_19530 f72a3797d3ac581686e0493466b94fcc 312 SUPERFAMILY SSF52768 11 310 4.32E-80 T 17-10-2018 IPR023696 Ureohydrolase domain superfamily VI35_19530 f72a3797d3ac581686e0493466b94fcc 312 ProSitePatterns PS01053 Arginase family signature. 241 262 - T 17-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 VI35_19530 f72a3797d3ac581686e0493466b94fcc 312 Gene3D G3DSA:3.40.800.10 4 312 1.7E-114 T 17-10-2018 VI35_19530 f72a3797d3ac581686e0493466b94fcc 312 PRINTS PR00116 Arginase signature 121 136 1.3E-5 T 17-10-2018 IPR006035 Ureohydrolase GO:0046872 VI35_19530 f72a3797d3ac581686e0493466b94fcc 312 PRINTS PR00116 Arginase signature 238 267 1.3E-5 T 17-10-2018 IPR006035 Ureohydrolase GO:0046872 VI35_19530 f72a3797d3ac581686e0493466b94fcc 312 PRINTS PR00116 Arginase signature 273 287 1.3E-5 T 17-10-2018 IPR006035 Ureohydrolase GO:0046872 VI35_19530 f72a3797d3ac581686e0493466b94fcc 312 TIGRFAM TIGR01227 hutG: formimidoylglutamase 12 311 3.7E-99 T 17-10-2018 IPR005923 Formiminoglutamase GO:0019556|GO:0050415 KEGG: 00340+3.5.3.8 VI35_10745 cd7b93304f764d224a593b0b1b02e046 214 Gene3D G3DSA:3.40.50.300 4 213 3.6E-59 T 17-10-2018 VI35_10745 cd7b93304f764d224a593b0b1b02e046 214 TIGRFAM TIGR00235 udk: uridine kinase 5 212 2.1E-88 T 17-10-2018 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193|Reactome: R-HSA-73614 VI35_10745 cd7b93304f764d224a593b0b1b02e046 214 Hamap MF_00551 Uridine kinase [udk]. 5 213 39.364 T 17-10-2018 IPR026008 Uridine kinase GO:0004849|GO:0005524|GO:0016773 KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 VI35_10745 cd7b93304f764d224a593b0b1b02e046 214 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 10 199 3.6E-44 T 17-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 VI35_10745 cd7b93304f764d224a593b0b1b02e046 214 PRINTS PR00988 Uridine kinase signature 157 168 4.4E-36 T 17-10-2018 VI35_10745 cd7b93304f764d224a593b0b1b02e046 214 PRINTS PR00988 Uridine kinase signature 143 153 4.4E-36 T 17-10-2018 VI35_10745 cd7b93304f764d224a593b0b1b02e046 214 PRINTS PR00988 Uridine kinase signature 87 102 4.4E-36 T 17-10-2018 VI35_10745 cd7b93304f764d224a593b0b1b02e046 214 PRINTS PR00988 Uridine kinase signature 179 192 4.4E-36 T 17-10-2018 VI35_10745 cd7b93304f764d224a593b0b1b02e046 214 PRINTS PR00988 Uridine kinase signature 42 53 4.4E-36 T 17-10-2018 VI35_10745 cd7b93304f764d224a593b0b1b02e046 214 PRINTS PR00988 Uridine kinase signature 8 25 4.4E-36 T 17-10-2018 VI35_10745 cd7b93304f764d224a593b0b1b02e046 214 SUPERFAMILY SSF52540 9 205 1.88E-46 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_20885 ba3bf04802ae28f1745037995e6d3f21 107 Gene3D G3DSA:3.40.250.10 1 105 1.9E-29 T 17-10-2018 IPR036873 Rhodanese-like domain superfamily VI35_20885 ba3bf04802ae28f1745037995e6d3f21 107 Hamap MF_01009 Thiosulfate sulfurtransferase GlpE [glpE]. 2 105 31.356 T 17-10-2018 IPR023695 Thiosulfate sulfurtransferase, bacterial GO:0004792|GO:0005737 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927 VI35_20885 ba3bf04802ae28f1745037995e6d3f21 107 SMART SM00450 7 102 7.0E-22 T 17-10-2018 IPR001763 Rhodanese-like domain VI35_20885 ba3bf04802ae28f1745037995e6d3f21 107 Pfam PF00581 Rhodanese-like domain 8 98 3.0E-15 T 17-10-2018 IPR001763 Rhodanese-like domain VI35_20885 ba3bf04802ae28f1745037995e6d3f21 107 SUPERFAMILY SSF52821 1 99 7.07E-30 T 17-10-2018 IPR036873 Rhodanese-like domain superfamily VI35_16080 e8b8fa398336f221ae75cacc09b7db33 110 Gene3D G3DSA:3.30.429.10 1 110 5.1E-33 T 17-10-2018 IPR014347 Tautomerase/MIF superfamily VI35_16080 e8b8fa398336f221ae75cacc09b7db33 110 Pfam PF08921 Domain of unknown function (DUF1904) 1 109 4.5E-28 T 17-10-2018 IPR015017 Protein of unknown function DUF1904 VI35_16080 e8b8fa398336f221ae75cacc09b7db33 110 SUPERFAMILY SSF55331 1 110 1.13E-31 T 17-10-2018 IPR014347 Tautomerase/MIF superfamily VI35_06755 6f4b640db15aec0ecadcdcc2fec4d8ac 192 Pfam PF13580 SIS domain 23 146 4.5E-31 T 17-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 VI35_06755 6f4b640db15aec0ecadcdcc2fec4d8ac 192 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 1 190 37.814 T 17-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 VI35_06755 6f4b640db15aec0ecadcdcc2fec4d8ac 192 SUPERFAMILY SSF53697 1 189 3.84E-53 T 17-10-2018 VI35_06755 6f4b640db15aec0ecadcdcc2fec4d8ac 192 TIGRFAM TIGR00441 gmhA: phosphoheptose isomerase 35 187 3.2E-82 T 17-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 VI35_06755 6f4b640db15aec0ecadcdcc2fec4d8ac 192 Gene3D G3DSA:3.40.50.10490 1 192 2.1E-71 T 17-10-2018 VI35_10645 0182f0c07a0f750c89be7fc2833a6a37 293 Gene3D G3DSA:2.60.120.10 149 258 7.5E-82 T 17-10-2018 IPR014710 RmlC-like jelly roll fold VI35_10645 0182f0c07a0f750c89be7fc2833a6a37 293 PIRSF PIRSF006232 1 292 1.6E-89 T 17-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 VI35_10645 0182f0c07a0f750c89be7fc2833a6a37 293 Pfam PF05726 Pirin C-terminal cupin domain 188 289 5.6E-29 T 17-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 VI35_10645 0182f0c07a0f750c89be7fc2833a6a37 293 Pfam PF02678 Pirin 21 127 1.7E-33 T 17-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 VI35_10645 0182f0c07a0f750c89be7fc2833a6a37 293 Gene3D G3DSA:2.60.120.10 17 284 7.5E-82 T 17-10-2018 IPR014710 RmlC-like jelly roll fold VI35_10645 0182f0c07a0f750c89be7fc2833a6a37 293 SUPERFAMILY SSF51182 1 290 3.47E-82 T 17-10-2018 IPR011051 RmlC-like cupin domain superfamily VI35_18180 18c303989b1d3d7fbf15cbc87d7c0678 87 Pfam PF11112 Pyocin activator protein PrtN 3 72 2.8E-24 T 17-10-2018 IPR020518 Transcription regulator PrtN GO:0006355 VI35_10885 6f57d3ac5f82aba711d19d5220d9215c 659 Gene3D G3DSA:3.30.230.10 399 640 6.8E-92 T 17-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VI35_10885 6f57d3ac5f82aba711d19d5220d9215c 659 SUPERFAMILY SSF54211 420 615 9.1E-33 T 17-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VI35_10885 6f57d3ac5f82aba711d19d5220d9215c 659 Gene3D G3DSA:3.40.50.300 3 309 2.7E-35 T 17-10-2018 VI35_10885 6f57d3ac5f82aba711d19d5220d9215c 659 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 508 612 9.6E-8 T 17-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 VI35_10885 6f57d3ac5f82aba711d19d5220d9215c 659 Pfam PF13654 AAA domain 165 396 2.6E-45 T 17-10-2018 VI35_10885 6f57d3ac5f82aba711d19d5220d9215c 659 SUPERFAMILY SSF52540 176 392 1.25E-5 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_10885 6f57d3ac5f82aba711d19d5220d9215c 659 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 565 583 9.0E-9 T 17-10-2018 VI35_10885 6f57d3ac5f82aba711d19d5220d9215c 659 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 505 524 9.0E-9 T 17-10-2018 VI35_10885 6f57d3ac5f82aba711d19d5220d9215c 659 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 422 438 9.0E-9 T 17-10-2018 VI35_10885 6f57d3ac5f82aba711d19d5220d9215c 659 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 535 554 9.0E-9 T 17-10-2018 VI35_18925 02ed088ee0106b310b7df500854ec107 131 Gene3D G3DSA:3.10.129.10 2 128 7.1E-34 T 17-10-2018 VI35_18925 02ed088ee0106b310b7df500854ec107 131 SUPERFAMILY SSF54637 3 125 5.37E-34 T 17-10-2018 IPR029069 HotDog domain superfamily VI35_18925 02ed088ee0106b310b7df500854ec107 131 Pfam PF13279 Thioesterase-like superfamily 9 117 1.1E-10 T 17-10-2018 VI35_15845 044b4eb319962194692d9e3a14f9a67c 496 Pfam PF00916 Sulfate permease family 14 344 8.5E-51 T 17-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 VI35_15845 044b4eb319962194692d9e3a14f9a67c 496 Pfam PF01740 STAS domain 399 486 1.3E-7 T 17-10-2018 IPR002645 STAS domain VI35_15845 044b4eb319962194692d9e3a14f9a67c 496 ProSitePatterns PS01130 SLC26A transporters signature. 42 63 - T 17-10-2018 IPR018045 Sulphate anion transporter, conserved site GO:0008271|GO:0008272 Reactome: R-HSA-427601 VI35_15845 044b4eb319962194692d9e3a14f9a67c 496 Gene3D G3DSA:3.30.750.24 387 484 4.7E-30 T 17-10-2018 IPR036513 STAS domain superfamily VI35_15845 044b4eb319962194692d9e3a14f9a67c 496 SUPERFAMILY SSF52091 397 483 1.14E-11 T 17-10-2018 IPR036513 STAS domain superfamily VI35_06460 e65b9c900d5e7fdb4caa0a3ca34bcd46 149 Pfam PF00877 NlpC/P60 family 42 146 6.6E-28 T 17-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain VI35_06460 e65b9c900d5e7fdb4caa0a3ca34bcd46 149 SUPERFAMILY SSF54001 31 148 7.85E-40 T 17-10-2018 IPR038765 Papain-like cysteine peptidase superfamily VI35_06460 e65b9c900d5e7fdb4caa0a3ca34bcd46 149 Gene3D G3DSA:3.90.1720.10 30 149 7.2E-40 T 17-10-2018 VI35_07180 89af72e914b5d22ca5b399a501c6c107 455 Pfam PF07603 Protein of unknown function (DUF1566) 282 405 1.0E-13 T 17-10-2018 IPR011460 Protein of unknown function DUF1566 VI35_18035 5bf022c41fbab7d207fd2fbebd17a7f9 335 Gene3D G3DSA:3.40.190.10 119 325 1.8E-127 T 17-10-2018 VI35_18035 5bf022c41fbab7d207fd2fbebd17a7f9 335 Gene3D G3DSA:3.40.190.10 24 295 1.8E-127 T 17-10-2018 VI35_18035 5bf022c41fbab7d207fd2fbebd17a7f9 335 PIRSF PIRSF002825 5 335 8.6E-95 T 17-10-2018 IPR026045 Ferric binding protein VI35_18035 5bf022c41fbab7d207fd2fbebd17a7f9 335 SUPERFAMILY SSF53850 23 330 2.09E-78 T 17-10-2018 VI35_18035 5bf022c41fbab7d207fd2fbebd17a7f9 335 Pfam PF13343 Bacterial extracellular solute-binding protein 71 298 2.9E-22 T 17-10-2018 VI35_16275 4fcdf00caff64692a512409e6ddeac04 288 Pfam PF13181 Tetratricopeptide repeat 157 186 1.5E-5 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_16275 4fcdf00caff64692a512409e6ddeac04 288 Gene3D G3DSA:1.25.40.10 67 288 7.7E-17 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_16275 4fcdf00caff64692a512409e6ddeac04 288 SMART SM00028 157 190 0.23 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_16275 4fcdf00caff64692a512409e6ddeac04 288 SMART SM00028 78 111 44.0 T 17-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VI35_16275 4fcdf00caff64692a512409e6ddeac04 288 SUPERFAMILY SSF48452 78 251 7.97E-12 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_06765 2ad1f68d232452c1a5e9292e9a85e741 111 Pfam PF01627 Hpt domain 25 99 3.3E-13 T 17-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VI35_06765 2ad1f68d232452c1a5e9292e9a85e741 111 Gene3D G3DSA:1.20.120.160 1 111 1.1E-25 T 17-10-2018 IPR036641 HPT domain superfamily GO:0000160 VI35_06765 2ad1f68d232452c1a5e9292e9a85e741 111 SUPERFAMILY SSF47226 2 110 4.19E-25 T 17-10-2018 IPR036641 HPT domain superfamily GO:0000160 VI35_05420 e6b30dded2d2676a7b428ce498b1ebb1 71 SUPERFAMILY SSF68989 14 71 9.68E-5 T 17-10-2018 IPR036666 HHA superfamily VI35_16945 06e6c065ea3f6deeccd53d63b7d0b2e4 223 Gene3D G3DSA:3.40.50.10070 38 166 3.5E-6 T 17-10-2018 IPR036752 TolB, N-terminal domain superfamily GO:0015031|GO:0042597 VI35_16945 06e6c065ea3f6deeccd53d63b7d0b2e4 223 SUPERFAMILY SSF52964 44 143 7.32E-11 T 17-10-2018 VI35_16945 06e6c065ea3f6deeccd53d63b7d0b2e4 223 Pfam PF03783 Curli production assembly/transport component CsgG 43 220 9.7E-32 T 17-10-2018 IPR005534 Curli production assembly/transport component CsgG GO:0030288 VI35_12475 98ba0cd995a733c929cb041d1c55c548 407 SUPERFAMILY SSF51905 8 391 1.52E-52 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_12475 98ba0cd995a733c929cb041d1c55c548 407 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 303 316 - T 17-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 VI35_12475 98ba0cd995a733c929cb041d1c55c548 407 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 10 398 7.5E-125 T 17-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 VI35_12475 98ba0cd995a733c929cb041d1c55c548 407 Gene3D G3DSA:3.50.50.60 10 347 2.2E-99 T 17-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VI35_12475 98ba0cd995a733c929cb041d1c55c548 407 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 304 320 7.0E-16 T 17-10-2018 VI35_12475 98ba0cd995a733c929cb041d1c55c548 407 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 165 180 7.0E-16 T 17-10-2018 VI35_12475 98ba0cd995a733c929cb041d1c55c548 407 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 289 304 7.0E-16 T 17-10-2018 VI35_12475 98ba0cd995a733c929cb041d1c55c548 407 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 10 32 7.0E-16 T 17-10-2018 VI35_12475 98ba0cd995a733c929cb041d1c55c548 407 TIGRFAM TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase 10 399 2.7E-131 T 17-10-2018 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase GO:0006744|GO:0008681 VI35_12475 98ba0cd995a733c929cb041d1c55c548 407 Pfam PF01494 FAD binding domain 9 348 4.2E-23 T 17-10-2018 IPR002938 FAD-binding domain GO:0071949 VI35_12475 98ba0cd995a733c929cb041d1c55c548 407 Gene3D G3DSA:3.30.9.50 89 278 2.2E-99 T 17-10-2018 VI35_06350 5c811f54e406329a56a6aada60401b07 273 SUPERFAMILY SSF158472 204 254 5.36E-7 T 17-10-2018 VI35_06350 5c811f54e406329a56a6aada60401b07 273 SMART SM00304 203 256 5.4E-11 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_06350 5c811f54e406329a56a6aada60401b07 273 Pfam PF00672 HAMP domain 204 252 8.8E-10 T 17-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VI35_06350 5c811f54e406329a56a6aada60401b07 273 Gene3D G3DSA:1.10.287.130 202 261 6.5E-6 T 17-10-2018 VI35_12070 fca62beffdcd4f6bcedd3668d600f082 417 Pfam PF07690 Major Facilitator Superfamily 16 353 4.7E-35 T 17-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VI35_12070 fca62beffdcd4f6bcedd3668d600f082 417 Gene3D G3DSA:1.20.1250.20 7 387 2.3E-47 T 17-10-2018 VI35_12070 fca62beffdcd4f6bcedd3668d600f082 417 SUPERFAMILY SSF103473 6 388 9.02E-53 T 17-10-2018 IPR036259 MFS transporter superfamily VI35_20780 180aa4172205560d8fc388e0ec3fb786 254 Gene3D G3DSA:3.20.20.450 6 252 3.0E-64 T 17-10-2018 IPR035919 EAL domain superfamily VI35_20780 180aa4172205560d8fc388e0ec3fb786 254 Pfam PF00563 EAL domain 24 241 1.6E-48 T 17-10-2018 IPR001633 EAL domain VI35_20780 180aa4172205560d8fc388e0ec3fb786 254 SUPERFAMILY SSF141868 24 241 2.22E-58 T 17-10-2018 IPR035919 EAL domain superfamily VI35_20780 180aa4172205560d8fc388e0ec3fb786 254 SMART SM00052 4 250 1.2E-26 T 17-10-2018 IPR001633 EAL domain VI35_14815 e0837db9314d6cc3835ebcc969e39c04 447 Pfam PF13520 Amino acid permease 31 391 9.8E-34 T 17-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VI35_14815 e0837db9314d6cc3835ebcc969e39c04 447 Gene3D G3DSA:1.20.1740.10 8 439 2.0E-68 T 17-10-2018 VI35_14815 e0837db9314d6cc3835ebcc969e39c04 447 PIRSF PIRSF006060 2 444 1.0E-69 T 17-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VI35_20340 f3e57fd8e438d3bfbf3d307a139a113d 168 Pfam PF12867 DinB superfamily 9 148 1.2E-8 T 17-10-2018 IPR024775 DinB-like domain VI35_20340 f3e57fd8e438d3bfbf3d307a139a113d 168 SUPERFAMILY SSF109854 4 157 6.87E-23 T 17-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes VI35_20340 f3e57fd8e438d3bfbf3d307a139a113d 168 Gene3D G3DSA:1.20.120.450 2 161 9.8E-26 T 17-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes VI35_03795 e7d3d32a9aa5b7116b2b2b913bc3c648 397 Pfam PF12698 ABC-2 family transporter protein 23 373 7.5E-40 T 17-10-2018 VI35_19050 c224c3ea9597806864f871d389461e74 256 Gene3D G3DSA:3.40.50.880 7 255 1.9E-66 T 17-10-2018 IPR029062 Class I glutamine amidotransferase-like VI35_19050 c224c3ea9597806864f871d389461e74 256 Pfam PF07722 Peptidase C26 10 228 2.1E-67 T 17-10-2018 IPR011697 Peptidase C26 GO:0016787 Reactome: R-HSA-6798695 VI35_19050 c224c3ea9597806864f871d389461e74 256 SUPERFAMILY SSF52317 32 250 2.38E-42 T 17-10-2018 IPR029062 Class I glutamine amidotransferase-like VI35_07530 6fd4d8916fab54292c191cc8f45eebcc 210 Hamap MF_00479 Ion-translocating oxidoreductase complex subunit G [rsxG]. 2 195 25.908 T 17-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 VI35_07530 6fd4d8916fab54292c191cc8f45eebcc 210 Pfam PF04205 FMN-binding domain 101 190 1.2E-19 T 17-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 VI35_07530 6fd4d8916fab54292c191cc8f45eebcc 210 SMART SM00900 101 193 5.5E-34 T 17-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 VI35_07530 6fd4d8916fab54292c191cc8f45eebcc 210 TIGRFAM TIGR01947 rnfG: electron transport complex, RnfABCDGE type, G subunit 9 194 4.4E-62 T 17-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 VI35_07530 6fd4d8916fab54292c191cc8f45eebcc 210 PIRSF PIRSF006091 1 206 4.1E-77 T 17-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 VI35_13790 4baf88c3399cf563d4f2ebc9559206cc 576 Pfam PF15864 Protein glycosylation ligase 167 191 4.1E-11 T 17-10-2018 IPR031726 Protein glycosylation ligase domain VI35_13790 4baf88c3399cf563d4f2ebc9559206cc 576 Pfam PF11846 Virulence factor membrane-bound polymerase, C-terminal 374 561 3.8E-34 T 17-10-2018 IPR021797 Virulence factor membrane-bound polymerase, C-terminal VI35_13790 4baf88c3399cf563d4f2ebc9559206cc 576 Pfam PF04932 O-Antigen ligase 209 352 1.7E-11 T 17-10-2018 IPR007016 O-antigen ligase-related VI35_18095 0cbcff6bde2e8f8d447d66460e7c4b19 124 ProDom PD020773 UPF0231 YACL UNCHARACTERISED UCP006287 VC0605 UNCHARACTERIZED 3'REGION VV2750 BCR OXIDASE 1 118 7.0E-20 T 17-10-2018 IPR008249 Uncharacterised protein family UPF0231 VI35_18095 0cbcff6bde2e8f8d447d66460e7c4b19 124 PIRSF PIRSF006287 1 121 9.1E-41 T 17-10-2018 IPR008249 Uncharacterised protein family UPF0231 VI35_18095 0cbcff6bde2e8f8d447d66460e7c4b19 124 Pfam PF06062 Uncharacterised protein family (UPF0231) 1 118 2.0E-41 T 17-10-2018 IPR008249 Uncharacterised protein family UPF0231 VI35_16775 0f3375da65d67c4e2e458ad3bcddab33 369 Gene3D G3DSA:3.40.50.2000 2 183 4.6E-5 T 17-10-2018 VI35_16775 0f3375da65d67c4e2e458ad3bcddab33 369 Pfam PF13528 Glycosyl transferase family 1 1 300 4.3E-39 T 17-10-2018 VI35_16775 0f3375da65d67c4e2e458ad3bcddab33 369 TIGRFAM TIGR00661 MJ1255: conserved hypothetical protein 2 309 7.6E-69 T 17-10-2018 IPR005262 Conserved hypothetical protein CHP00661 VI35_16775 0f3375da65d67c4e2e458ad3bcddab33 369 SUPERFAMILY SSF53756 1 295 7.99E-17 T 17-10-2018 VI35_16775 0f3375da65d67c4e2e458ad3bcddab33 369 Gene3D G3DSA:3.40.50.2000 184 304 3.4E-5 T 17-10-2018 VI35_18160 62f451d560537907fea80f6a3fbb77a7 435 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 14 413 2.5E-128 T 17-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 VI35_18160 62f451d560537907fea80f6a3fbb77a7 435 Pfam PF05525 Branched-chain amino acid transport protein 8 424 3.6E-139 T 17-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 VI35_16375 38bd2879e1a3d027becdf36b852d8256 380 Gene3D G3DSA:1.20.1250.20 193 377 2.4E-33 T 17-10-2018 VI35_16375 38bd2879e1a3d027becdf36b852d8256 380 PIRSF PIRSF004925 1 380 2.4E-105 T 17-10-2018 IPR026032 Probable 3-phenylpropionic acid transporter VI35_16375 38bd2879e1a3d027becdf36b852d8256 380 SUPERFAMILY SSF103473 4 369 7.19E-33 T 17-10-2018 IPR036259 MFS transporter superfamily VI35_16375 38bd2879e1a3d027becdf36b852d8256 380 Gene3D G3DSA:1.20.1250.20 1 187 7.1E-17 T 17-10-2018 VI35_16375 38bd2879e1a3d027becdf36b852d8256 380 Pfam PF12832 MFS_1 like family 10 357 1.5E-42 T 17-10-2018 IPR024989 Major facilitator superfamily associated domain VI35_10350 4b182739a831994e0cac52253434f441 460 Pfam PF03313 Serine dehydratase alpha chain 190 454 2.9E-101 T 17-10-2018 IPR005130 Serine dehydratase-like, alpha subunit VI35_10350 4b182739a831994e0cac52253434f441 460 SUPERFAMILY SSF143548 16 156 1.94E-44 T 17-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 VI35_10350 4b182739a831994e0cac52253434f441 460 Pfam PF03315 Serine dehydratase beta chain 3 155 9.5E-56 T 17-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 VI35_10350 4b182739a831994e0cac52253434f441 460 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 2 457 4.2E-214 T 17-10-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 VI35_10350 4b182739a831994e0cac52253434f441 460 Gene3D G3DSA:3.30.1330.90 10 159 1.5E-51 T 17-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 VI35_06190 e66c6ae16bfd8f2cc1968f4f401a8c1f 433 PIRSF PIRSF006066 4 433 2.1E-163 T 17-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 VI35_06190 e66c6ae16bfd8f2cc1968f4f401a8c1f 433 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 20 427 1.1E-139 T 17-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 VI35_06190 e66c6ae16bfd8f2cc1968f4f401a8c1f 433 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 10 421 8.4E-112 T 17-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit VI35_09090 078d663479a8627b29c344e6c22f3348 59 SUPERFAMILY SSF46955 8 52 4.39E-6 T 17-10-2018 IPR009061 Putative DNA-binding domain superfamily VI35_09090 078d663479a8627b29c344e6c22f3348 59 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 8 38 1.6E-8 T 17-10-2018 IPR010260 DNA-binding transcriptional activator AlpA VI35_09090 078d663479a8627b29c344e6c22f3348 59 Gene3D G3DSA:1.10.1660.10 8 54 3.6E-5 T 17-10-2018 VI35_00245 69ff7563ef1e87fc4b390529f09099c4 174 Pfam PF00210 Ferritin-like domain 7 143 4.7E-40 T 17-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 VI35_00245 69ff7563ef1e87fc4b390529f09099c4 174 SUPERFAMILY SSF47240 1 159 4.36E-59 T 17-10-2018 IPR009078 Ferritin-like superfamily VI35_00245 69ff7563ef1e87fc4b390529f09099c4 174 Gene3D G3DSA:1.20.1260.10 1 174 1.1E-51 T 17-10-2018 IPR012347 Ferritin-like VI35_16175 98208973310945afc02cb27c22e214c3 420 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 46 411 3.6E-30 T 17-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase VI35_16175 98208973310945afc02cb27c22e214c3 420 Gene3D G3DSA:3.60.10.10 42 420 1.1E-14 T 17-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily VI35_16175 98208973310945afc02cb27c22e214c3 420 SUPERFAMILY SSF56219 50 419 9.79E-18 T 17-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily VI35_02540 83473ebcf20d79f5e1587a1d94960b32 195 Pfam PF14163 Super-infection exclusion protein B 18 164 2.8E-40 T 17-10-2018 IPR025982 Superinfection exclusion protein B VI35_11045 878a30ce876d45fd267bba17d4f22581 322 Pfam PF02653 Branched-chain amino acid transport system / permease component 45 313 8.7E-53 T 17-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 VI35_11450 cab04a405a1b960a02e1bbff0c1a55f7 241 Gene3D G3DSA:2.60.120.620 34 225 4.6E-54 T 17-10-2018 VI35_11450 cab04a405a1b960a02e1bbff0c1a55f7 241 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 131 221 3.9E-21 T 17-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 VI35_11450 cab04a405a1b960a02e1bbff0c1a55f7 241 SMART SM00702 45 221 2.8E-30 T 17-10-2018 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 VI35_06795 732d4ac3877ed3f352b572bac007eecf 212 Pfam PF00196 Bacterial regulatory proteins, luxR family 152 206 2.5E-22 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_06795 732d4ac3877ed3f352b572bac007eecf 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 183 195 7.5E-14 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_06795 732d4ac3877ed3f352b572bac007eecf 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 153 167 7.5E-14 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_06795 732d4ac3877ed3f352b572bac007eecf 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 167 183 7.5E-14 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_06795 732d4ac3877ed3f352b572bac007eecf 212 Pfam PF00072 Response regulator receiver domain 8 119 3.0E-30 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_06795 732d4ac3877ed3f352b572bac007eecf 212 SMART SM00448 6 119 1.0E-34 T 17-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VI35_06795 732d4ac3877ed3f352b572bac007eecf 212 Gene3D G3DSA:3.40.50.12740 7 211 4.3E-62 T 17-10-2018 VI35_06795 732d4ac3877ed3f352b572bac007eecf 212 SUPERFAMILY SSF46894 141 209 1.39E-20 T 17-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VI35_06795 732d4ac3877ed3f352b572bac007eecf 212 ProSitePatterns PS00622 LuxR-type HTH domain signature. 167 194 - T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_06795 732d4ac3877ed3f352b572bac007eecf 212 SUPERFAMILY SSF52172 4 135 1.18E-34 T 17-10-2018 IPR011006 CheY-like superfamily VI35_06795 732d4ac3877ed3f352b572bac007eecf 212 SMART SM00421 150 207 4.0E-23 T 17-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VI35_00505 315759b845539ffffc3702c400c5da19 287 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 287 1.4E-114 T 17-10-2018 IPR005229 Conserved hypothetical protein CHP00255 VI35_00505 315759b845539ffffc3702c400c5da19 287 Pfam PF08340 Domain of unknown function (DUF1732) 203 287 7.7E-35 T 17-10-2018 IPR013551 Domain of unknown function DUF1732 VI35_00505 315759b845539ffffc3702c400c5da19 287 Pfam PF03755 YicC-like family, N-terminal region 2 153 9.8E-42 T 17-10-2018 IPR013527 YicC-like, N-terminal VI35_18950 5ab858b5eedffc25d1e658d3b943262a 391 Pfam PF00465 Iron-containing alcohol dehydrogenase 17 364 2.6E-86 T 17-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 VI35_18950 5ab858b5eedffc25d1e658d3b943262a 391 Gene3D G3DSA:3.40.50.1970 9 188 1.5E-44 T 17-10-2018 VI35_18950 5ab858b5eedffc25d1e658d3b943262a 391 Gene3D G3DSA:1.20.1090.10 189 391 1.1E-41 T 17-10-2018 VI35_18950 5ab858b5eedffc25d1e658d3b943262a 391 SUPERFAMILY SSF56796 10 388 9.55E-100 T 17-10-2018 VI35_06060 de6425b28f5b28faa474c093dd48f1b9 78 TIGRFAM TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI 4 64 2.1E-12 T 17-10-2018 IPR017560 Cytochrome c-type biogenesis protein CcmI VI35_18840 863c3e8057b1d226232f7876765094d5 96 Pfam PF03692 Putative zinc- or iron-chelating domain 11 79 8.4E-11 T 17-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein VI35_20995 6fc5e92442cc0ba10b479ed604df63c1 202 SUPERFAMILY SSF55718 13 119 2.9E-6 T 17-10-2018 IPR036527 SCP2 sterol-binding domain superfamily VI35_20995 6fc5e92442cc0ba10b479ed604df63c1 202 Pfam PF02036 SCP-2 sterol transfer family 15 111 5.4E-18 T 17-10-2018 IPR003033 SCP2 sterol-binding domain VI35_02170 e0194be387b3f7639994b8d1d960a8d2 152 Pfam PF03748 Flagellar basal body-associated protein FliL 53 152 3.7E-10 T 17-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 VI35_03225 9941f7e5aaf10a550e0352be37bee0c0 105 Pfam PF03091 CutA1 divalent ion tolerance protein 5 102 2.1E-36 T 17-10-2018 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 VI35_03225 9941f7e5aaf10a550e0352be37bee0c0 105 Gene3D G3DSA:3.30.70.120 1 105 7.3E-41 T 17-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal VI35_03225 9941f7e5aaf10a550e0352be37bee0c0 105 SUPERFAMILY SSF54913 2 104 1.74E-37 T 17-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta VI35_13340 b939fb5fb603823d3177e53ef5f91235 65 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 3 59 24.775 T 17-10-2018 IPR038053 Uncharacterised protein family UPF0434 VI35_13340 b939fb5fb603823d3177e53ef5f91235 65 SUPERFAMILY SSF158997 2 58 8.37E-17 T 17-10-2018 VI35_13340 b939fb5fb603823d3177e53ef5f91235 65 Pfam PF03966 Trm112p-like protein 6 46 4.1E-8 T 17-10-2018 IPR005651 Trm112-like VI35_13340 b939fb5fb603823d3177e53ef5f91235 65 Gene3D G3DSA:2.20.25.10 10 65 2.5E-19 T 17-10-2018 VI35_18570 3144e8bb9c2c650086463a18be190d0b 297 SUPERFAMILY SSF103481 187 283 2.48E-11 T 17-10-2018 VI35_18570 3144e8bb9c2c650086463a18be190d0b 297 Pfam PF00892 EamA-like transporter family 186 281 2.5E-7 T 17-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VI35_18570 3144e8bb9c2c650086463a18be190d0b 297 Pfam PF00892 EamA-like transporter family 8 141 2.7E-10 T 17-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VI35_18570 3144e8bb9c2c650086463a18be190d0b 297 TIGRFAM TIGR00688 rarD: protein RarD 10 257 2.5E-43 T 17-10-2018 IPR004626 RarD protein GO:0005887 VI35_18570 3144e8bb9c2c650086463a18be190d0b 297 SUPERFAMILY SSF103481 45 143 3.4E-11 T 17-10-2018 VI35_05675 5a24ff0cf3f704a223a56f1e3c0f8dbd 232 SUPERFAMILY SSF54060 24 231 2.12E-84 T 17-10-2018 VI35_05675 5a24ff0cf3f704a223a56f1e3c0f8dbd 232 Pfam PF04231 Endonuclease I 45 229 2.0E-40 T 17-10-2018 IPR007346 Endonuclease I GO:0004518 VI35_00815 fd08fed9b8c9be704ca15e6fea753ced 100 Gene3D G3DSA:1.10.760.10 22 100 6.3E-25 T 17-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VI35_00815 fd08fed9b8c9be704ca15e6fea753ced 100 Pfam PF00034 Cytochrome c 33 100 5.9E-8 T 17-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VI35_00815 fd08fed9b8c9be704ca15e6fea753ced 100 SUPERFAMILY SSF46626 20 99 2.72E-22 T 17-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VI35_08605 695194eb93864c58f62dd72bf38fc9ce 200 TIGRFAM TIGR00615 recR: recombination protein RecR 2 197 2.6E-77 T 17-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 VI35_08605 695194eb93864c58f62dd72bf38fc9ce 200 Gene3D G3DSA:1.10.8.420 1 52 5.9E-15 T 17-10-2018 VI35_08605 695194eb93864c58f62dd72bf38fc9ce 200 SUPERFAMILY SSF111304 2 199 1.44E-70 T 17-10-2018 IPR023627 Recombination protein RecR VI35_08605 695194eb93864c58f62dd72bf38fc9ce 200 SMART SM00493 81 166 4.7E-20 T 17-10-2018 IPR006171 TOPRIM domain VI35_08605 695194eb93864c58f62dd72bf38fc9ce 200 Hamap MF_00017 Recombination protein RecR [recR]. 1 199 98.95 T 17-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 VI35_08605 695194eb93864c58f62dd72bf38fc9ce 200 Pfam PF02132 RecR protein 41 77 9.8E-13 T 17-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger VI35_08605 695194eb93864c58f62dd72bf38fc9ce 200 Pfam PF13662 Toprim domain 83 172 2.6E-23 T 17-10-2018 IPR006171 TOPRIM domain VI35_08605 695194eb93864c58f62dd72bf38fc9ce 200 Gene3D G3DSA:3.40.1360.10 77 199 9.9E-40 T 17-10-2018 VI35_14745 804cfbfd87070b95b203c51b4b101c41 205 SUPERFAMILY SSF52266 36 200 7.72E-34 T 17-10-2018 VI35_14745 804cfbfd87070b95b203c51b4b101c41 205 Gene3D G3DSA:3.40.50.1110 34 204 4.8E-41 T 17-10-2018 IPR036514 SGNH hydrolase superfamily VI35_14745 804cfbfd87070b95b203c51b4b101c41 205 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 39 189 1.7E-19 T 17-10-2018 IPR013830 SGNH hydrolase-type esterase domain VI35_03235 0162aadb20565b0040fba3eccfca2f05 145 Pfam PF05232 Chlorhexidine efflux transporter 73 134 1.6E-24 T 17-10-2018 IPR007896 Chlorhexidine efflux transporter VI35_03235 0162aadb20565b0040fba3eccfca2f05 145 Pfam PF05232 Chlorhexidine efflux transporter 2 64 2.6E-23 T 17-10-2018 IPR007896 Chlorhexidine efflux transporter VI35_09275 ba37a33de508ae4d62d5d11f745ead9f 221 SUPERFAMILY SSF51445 33 212 2.99E-43 T 17-10-2018 IPR017853 Glycoside hydrolase superfamily VI35_09275 ba37a33de508ae4d62d5d11f745ead9f 221 Pfam PF07745 Glycosyl hydrolase family 53 36 212 8.0E-54 T 17-10-2018 IPR011683 Glycosyl hydrolase family 53 GO:0015926 VI35_09275 ba37a33de508ae4d62d5d11f745ead9f 221 Gene3D G3DSA:3.20.20.80 29 218 2.6E-62 T 17-10-2018 VI35_17930 7b39a82e0928da213e9d9dcd8fcf21fd 109 Gene3D G3DSA:2.60.40.10 6 108 1.4E-12 T 17-10-2018 IPR013783 Immunoglobulin-like fold VI35_17930 7b39a82e0928da213e9d9dcd8fcf21fd 109 SUPERFAMILY SSF81296 23 107 5.13E-12 T 17-10-2018 IPR014756 Immunoglobulin E-set VI35_02300 dc9a63ab995ef239076bd74a4a6e7905 64 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 1 59 18.93 T 17-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 VI35_02300 dc9a63ab995ef239076bd74a4a6e7905 64 SUPERFAMILY SSF57716 2 52 2.42E-20 T 17-10-2018 VI35_02300 dc9a63ab995ef239076bd74a4a6e7905 64 Gene3D G3DSA:3.30.50.10 1 60 4.2E-24 T 17-10-2018 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 Reactome: R-HSA-383280 VI35_02300 dc9a63ab995ef239076bd74a4a6e7905 64 Pfam PF03884 DNA gyrase inhibitor YacG 5 51 2.9E-25 T 17-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 VI35_14490 c51fac91336777c6901489a4e5307697 202 Pfam PF01810 LysE type translocator 12 188 5.4E-20 T 17-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VI35_05305 147ef91ff3175fc650b25748f9d5d10e 225 SUPERFAMILY SSF51695 2 224 1.23E-58 T 17-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 VI35_05305 147ef91ff3175fc650b25748f9d5d10e 225 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 6 222 2.8E-30 T 17-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 VI35_05305 147ef91ff3175fc650b25748f9d5d10e 225 Gene3D G3DSA:3.20.20.190 1 225 4.2E-63 T 17-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 VI35_13495 610d91fa055d814842ad7f81c0744570 549 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 273 541 4.8E-75 T 17-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 VI35_13495 610d91fa055d814842ad7f81c0744570 549 SUPERFAMILY SSF161098 263 531 1.3E-34 T 17-10-2018 IPR035906 MetI-like superfamily VI35_13495 610d91fa055d814842ad7f81c0744570 549 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 317 544 1.1E-16 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_13495 610d91fa055d814842ad7f81c0744570 549 Gene3D G3DSA:1.10.3720.10 282 543 1.5E-29 T 17-10-2018 IPR035906 MetI-like superfamily VI35_02590 c9c6d47e86bb9a998e8e8768133bf34c 68 Pfam PF11137 Protein of unknown function (DUF2909) 3 61 9.2E-13 T 17-10-2018 IPR021313 Protein of unknown function DUF2909 VI35_01410 0d2e617588e78ff0c5ebd8292cbf083d 452 Pfam PF00860 Permease family 30 412 1.2E-72 T 17-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 VI35_04165 64934285f6b2c1fb9545d9f5abced723 68 Gene3D G3DSA:2.30.30.100 15 68 8.3E-25 T 17-10-2018 VI35_04165 64934285f6b2c1fb9545d9f5abced723 68 SUPERFAMILY SSF50182 17 67 6.54E-17 T 17-10-2018 IPR010920 LSM domain superfamily VI35_04165 64934285f6b2c1fb9545d9f5abced723 68 Pfam PF06004 Bacterial protein of unknown function (DUF903) 19 67 2.2E-21 T 17-10-2018 IPR010305 Protein of unknown function DUF903 VI35_17005 922d71e4cfe02734d5b61c5b98330f5a 567 SUPERFAMILY SSF75304 1 561 3.4E-87 T 17-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 VI35_17005 922d71e4cfe02734d5b61c5b98330f5a 567 Pfam PF01425 Amidase 462 544 4.3E-7 T 17-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 VI35_17005 922d71e4cfe02734d5b61c5b98330f5a 567 Pfam PF01425 Amidase 25 347 2.0E-45 T 17-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 VI35_17005 922d71e4cfe02734d5b61c5b98330f5a 567 Gene3D G3DSA:3.90.1300.10 1 564 9.5E-101 T 17-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 VI35_08715 28efad975d142cf33a5719e795146ef6 243 SUPERFAMILY SSF56214 126 211 1.64E-9 T 17-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 VI35_08715 28efad975d142cf33a5719e795146ef6 243 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 126 212 1.2E-7 T 17-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 VI35_08715 28efad975d142cf33a5719e795146ef6 243 PRINTS PR01399 Enterobactin synthetase component D signature 173 189 4.7E-16 T 17-10-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 VI35_08715 28efad975d142cf33a5719e795146ef6 243 PRINTS PR01399 Enterobactin synthetase component D signature 90 108 4.7E-16 T 17-10-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 VI35_08715 28efad975d142cf33a5719e795146ef6 243 PRINTS PR01399 Enterobactin synthetase component D signature 60 80 4.7E-16 T 17-10-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 VI35_07580 f7cd4a5a280ff5411f6409c2833fb3f0 491 Pfam PF03606 C4-dicarboxylate anaerobic carrier 13 485 3.2E-120 T 17-10-2018 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 VI35_06260 179b809912b05b22f12eb6e76044e5c4 176 Pfam PF07509 Protein of unknown function (DUF1523) 6 168 1.6E-55 T 17-10-2018 IPR011088 Bacteriophage phiNM3, A0EWY4 VI35_07320 d0cd16fe4f2c244982c5bf262663a6a4 246 SUPERFAMILY SSF161098 10 227 5.63E-41 T 17-10-2018 IPR035906 MetI-like superfamily VI35_07320 d0cd16fe4f2c244982c5bf262663a6a4 246 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 32 239 2.5E-22 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_07320 d0cd16fe4f2c244982c5bf262663a6a4 246 Gene3D G3DSA:1.10.3720.10 3 243 3.4E-51 T 17-10-2018 IPR035906 MetI-like superfamily VI35_07320 d0cd16fe4f2c244982c5bf262663a6a4 246 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 10 74 5.5E-16 T 17-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 VI35_19955 cf3a1c0808023e27f8778f0052a82901 156 Hamap MF_00821 Protein-export protein SecB [secB]. 1 148 33.936 T 17-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 VI35_19955 cf3a1c0808023e27f8778f0052a82901 156 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 9 143 1.4E-61 T 17-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 VI35_19955 cf3a1c0808023e27f8778f0052a82901 156 Gene3D G3DSA:3.10.420.10 1 156 1.5E-60 T 17-10-2018 IPR035958 SecB-like superfamily VI35_19955 cf3a1c0808023e27f8778f0052a82901 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 16 33 4.0E-41 T 17-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 VI35_19955 cf3a1c0808023e27f8778f0052a82901 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 100 122 4.0E-41 T 17-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 VI35_19955 cf3a1c0808023e27f8778f0052a82901 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 76 96 4.0E-41 T 17-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 VI35_19955 cf3a1c0808023e27f8778f0052a82901 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 126 144 4.0E-41 T 17-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 VI35_19955 cf3a1c0808023e27f8778f0052a82901 156 Pfam PF02556 Preprotein translocase subunit SecB 8 146 2.1E-58 T 17-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 VI35_19955 cf3a1c0808023e27f8778f0052a82901 156 SUPERFAMILY SSF54611 4 144 8.5E-56 T 17-10-2018 IPR035958 SecB-like superfamily VI35_17110 ca35c3af0f244ddf9e05570aa8c84bcd 196 Pfam PF01810 LysE type translocator 19 185 2.9E-17 T 17-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VI35_12690 69ff1d7240efbe50d4266acbece379ac 332 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 84 323 2.2E-38 T 17-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 VI35_12690 69ff1d7240efbe50d4266acbece379ac 332 Gene3D G3DSA:3.90.850.10 1 328 5.3E-135 T 17-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 VI35_12690 69ff1d7240efbe50d4266acbece379ac 332 SUPERFAMILY SSF56529 77 324 7.48E-58 T 17-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 VI35_06085 01fc2ccecea8fca6f6ebcb055476f71d 114 SUPERFAMILY SSF52833 1 102 9.8E-34 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_06085 01fc2ccecea8fca6f6ebcb055476f71d 114 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 4 100 5.2E-46 T 17-10-2018 IPR004480 Monothiol glutaredoxin-related VI35_06085 01fc2ccecea8fca6f6ebcb055476f71d 114 Gene3D G3DSA:3.40.30.10 2 107 2.0E-30 T 17-10-2018 VI35_06085 01fc2ccecea8fca6f6ebcb055476f71d 114 Pfam PF00462 Glutaredoxin 16 80 2.1E-17 T 17-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 VI35_06085 01fc2ccecea8fca6f6ebcb055476f71d 114 PIRSF PIRSF005894 1 107 4.9E-51 T 17-10-2018 IPR014434 Monothiol glutaredoxin GO:0015036 Reactome: R-HSA-1362409 VI35_05180 abc1698ae1d1545c8031fa8fb71b0d23 256 Pfam PF12048 Protein of unknown function (DUF3530) 58 243 2.4E-19 T 17-10-2018 IPR022529 Protein of unknown function DUF3530 VI35_09695 506313c765c6fa9d747eaade3c350ec2 531 Gene3D G3DSA:3.90.76.10 37 209 1.3E-149 T 17-10-2018 VI35_09695 506313c765c6fa9d747eaade3c350ec2 531 Gene3D G3DSA:3.10.105.10 289 507 1.3E-149 T 17-10-2018 VI35_09695 506313c765c6fa9d747eaade3c350ec2 531 PIRSF PIRSF002741 14 531 6.3E-96 T 17-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 VI35_09695 506313c765c6fa9d747eaade3c350ec2 531 SUPERFAMILY SSF53850 27 528 1.56E-131 T 17-10-2018 VI35_09695 506313c765c6fa9d747eaade3c350ec2 531 Gene3D G3DSA:3.40.190.10 210 519 1.3E-149 T 17-10-2018 VI35_09695 506313c765c6fa9d747eaade3c350ec2 531 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 70 448 4.7E-83 T 17-10-2018 IPR000914 Solute-binding protein family 5 domain VI35_11335 1b899c35fe10e12ad90b3ad0bfb18410 245 Pfam PF04288 MukE-like family 10 234 2.8E-111 T 17-10-2018 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE GO:0005737|GO:0007059|GO:0030261 VI35_11335 1b899c35fe10e12ad90b3ad0bfb18410 245 Gene3D G3DSA:1.10.10.2250 1 78 1.7E-27 T 17-10-2018 VI35_11335 1b899c35fe10e12ad90b3ad0bfb18410 245 Gene3D G3DSA:1.10.10.2260 88 194 3.8E-41 T 17-10-2018 VI35_06580 92d00a4b677ac4b2b0c5f37e12319cec 224 Hamap MF_00908 Negative modulator of initiation of replication [seqA]. 56 224 41.856 T 17-10-2018 IPR005621 Negative modulator of initiation of replication SeqA GO:0003677|GO:0032297 VI35_06580 92d00a4b677ac4b2b0c5f37e12319cec 224 Pfam PF03925 SeqA protein C-terminal domain 116 222 1.4E-41 T 17-10-2018 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain GO:0003677 VI35_06580 92d00a4b677ac4b2b0c5f37e12319cec 224 SUPERFAMILY SSF47598 56 89 1.6E-12 T 17-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 VI35_06580 92d00a4b677ac4b2b0c5f37e12319cec 224 PIRSF PIRSF019401 97 224 3.0E-37 T 17-10-2018 IPR005621 Negative modulator of initiation of replication SeqA GO:0003677|GO:0032297 VI35_06580 92d00a4b677ac4b2b0c5f37e12319cec 224 PIRSF PIRSF019401 56 112 2.2E-16 T 17-10-2018 IPR005621 Negative modulator of initiation of replication SeqA GO:0003677|GO:0032297 VI35_06580 92d00a4b677ac4b2b0c5f37e12319cec 224 Gene3D G3DSA:1.20.1380.10 110 224 5.8E-45 T 17-10-2018 IPR036835 Replication modulator SeqA, C-terminal DNA-binding domain superfamily GO:0003677 VI35_06580 92d00a4b677ac4b2b0c5f37e12319cec 224 SUPERFAMILY SSF82808 116 223 2.62E-40 T 17-10-2018 IPR036835 Replication modulator SeqA, C-terminal DNA-binding domain superfamily GO:0003677 VI35_06580 92d00a4b677ac4b2b0c5f37e12319cec 224 Gene3D G3DSA:1.10.1220.10 56 95 1.2E-22 T 17-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 VI35_06580 92d00a4b677ac4b2b0c5f37e12319cec 224 Pfam PF17206 SeqA protein N-terminal domain 56 89 2.5E-20 T 17-10-2018 IPR033761 Negative modulator of initiation of replication SeqA, N-terminal VI35_12150 3796c2aebd50c57c7dd8e473c86ba65d 247 Pfam PF03411 Penicillin-insensitive murein endopeptidase 17 246 2.8E-84 T 17-10-2018 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 VI35_12150 3796c2aebd50c57c7dd8e473c86ba65d 247 Gene3D G3DSA:3.30.1380.10 6 247 3.2E-83 T 17-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 VI35_12150 3796c2aebd50c57c7dd8e473c86ba65d 247 SUPERFAMILY SSF55166 14 246 1.41E-81 T 17-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 VI35_12150 3796c2aebd50c57c7dd8e473c86ba65d 247 PIRSF PIRSF018455 3 246 4.4E-86 T 17-10-2018 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 VI35_15495 a49171a2e65e2c1ac482c532b8ce0048 339 Gene3D G3DSA:3.40.1390.10 1 98 3.7E-34 T 17-10-2018 VI35_15495 a49171a2e65e2c1ac482c532b8ce0048 339 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 145 178 3.4E-6 T 17-10-2018 IPR001451 Hexapeptide repeat VI35_15495 a49171a2e65e2c1ac482c532b8ce0048 339 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 109 143 6.2E-9 T 17-10-2018 IPR001451 Hexapeptide repeat VI35_15495 a49171a2e65e2c1ac482c532b8ce0048 339 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 221 253 1.8E-4 T 17-10-2018 IPR001451 Hexapeptide repeat VI35_15495 a49171a2e65e2c1ac482c532b8ce0048 339 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 7 328 1.3E-117 T 17-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 VI35_15495 a49171a2e65e2c1ac482c532b8ce0048 339 SUPERFAMILY SSF51161 31 315 2.05E-86 T 17-10-2018 IPR011004 Trimeric LpxA-like superfamily VI35_15495 a49171a2e65e2c1ac482c532b8ce0048 339 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 22 88 2.4E-23 T 17-10-2018 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 VI35_15495 a49171a2e65e2c1ac482c532b8ce0048 339 Gene3D G3DSA:2.160.10.10 99 307 8.1E-63 T 17-10-2018 VI35_15495 a49171a2e65e2c1ac482c532b8ce0048 339 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 8 325 34.932 T 17-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 VI35_15495 a49171a2e65e2c1ac482c532b8ce0048 339 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 105 133 - T 17-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 VI35_04950 2159aecc44afabb67893f40987de6f91 125 Gene3D G3DSA:3.10.180.10 1 123 5.9E-18 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_04950 2159aecc44afabb67893f40987de6f91 125 SUPERFAMILY SSF54593 5 124 1.55E-14 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_06515 ac884517b9a50e02cbdfcc93a9c0e973 541 Gene3D G3DSA:3.40.720.10 214 541 9.0E-82 T 17-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VI35_06515 ac884517b9a50e02cbdfcc93a9c0e973 541 Pfam PF00884 Sulfatase 231 523 1.6E-44 T 17-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 VI35_06515 ac884517b9a50e02cbdfcc93a9c0e973 541 SUPERFAMILY SSF53649 265 527 2.4E-18 T 17-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VI35_06515 ac884517b9a50e02cbdfcc93a9c0e973 541 Pfam PF08019 Domain of unknown function (DUF1705) 52 202 9.3E-50 T 17-10-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 VI35_13320 2a81813fdd749b297262b29357507be7 184 PIRSF PIRSF000847 1 182 2.4E-48 T 17-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 VI35_13320 2a81813fdd749b297262b29357507be7 184 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 3 178 9.1E-60 T 17-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 VI35_13320 2a81813fdd749b297262b29357507be7 184 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 48 70 - T 17-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 VI35_13320 2a81813fdd749b297262b29357507be7 184 Pfam PF01066 CDP-alcohol phosphatidyltransferase 3 70 5.4E-19 T 17-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 VI35_13320 2a81813fdd749b297262b29357507be7 184 Gene3D G3DSA:1.20.120.1760 2 176 6.7E-18 T 17-10-2018 VI35_03825 da3f56fda00aeca7a96451e1b5573758 303 SUPERFAMILY SSF53448 9 290 3.38E-61 T 17-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VI35_03825 da3f56fda00aeca7a96451e1b5573758 303 Pfam PF00483 Nucleotidyl transferase 11 281 2.5E-25 T 17-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 VI35_03825 da3f56fda00aeca7a96451e1b5573758 303 Gene3D G3DSA:3.90.550.10 5 302 1.1E-89 T 17-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VI35_03825 da3f56fda00aeca7a96451e1b5573758 303 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 8 277 2.4E-115 T 17-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 VI35_06815 a503340ca85ef3471533e764af09acb3 88 Hamap MF_02200 Chaperone NapD [napD]. 6 82 19.129 T 17-10-2018 IPR005623 Chaperone NapD, nitrate reductase assembly VI35_06815 a503340ca85ef3471533e764af09acb3 88 Pfam PF03927 NapD protein 7 81 1.9E-27 T 17-10-2018 IPR005623 Chaperone NapD, nitrate reductase assembly VI35_06815 a503340ca85ef3471533e764af09acb3 88 Gene3D G3DSA:3.30.70.920 6 75 3.0E-21 T 17-10-2018 VI35_18495 b5d311114508d26a9ded996cf436dfbf 532 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 54 503 1.6E-152 T 17-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 VI35_18495 b5d311114508d26a9ded996cf436dfbf 532 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 17 503 4.3E-192 T 17-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 VI35_19150 8fb4ddb3da04762a01d75613ccdaf4de 211 Pfam PF16357 Putative PepSY_TM-like 18 211 7.7E-13 T 17-10-2018 IPR032307 Putative PepSY TM-like protein VI35_11980 947038e00ca296dbcdeda3acc34209bd 445 SMART SM01154 38 415 3.5E-182 T 17-10-2018 IPR012548 Protein of unknown function DUF1704 VI35_11980 947038e00ca296dbcdeda3acc34209bd 445 Pfam PF08014 Domain of unknown function (DUF1704) 40 411 1.4E-129 T 17-10-2018 IPR012548 Protein of unknown function DUF1704 VI35_11980 947038e00ca296dbcdeda3acc34209bd 445 TIGRFAM TIGR02421 QEGLA: conserved hypothetical protein 19 407 1.5E-112 T 17-10-2018 IPR012656 Conserved hypothetical protein CHP02421, QEGLA VI35_12495 2b47aea3849ba72c7e861685870f7331 399 Gene3D G3DSA:1.20.1720.10 9 387 1.2E-101 T 17-10-2018 VI35_12495 2b47aea3849ba72c7e861685870f7331 399 SUPERFAMILY SSF103473 3 390 4.58E-58 T 17-10-2018 IPR036259 MFS transporter superfamily VI35_12495 2b47aea3849ba72c7e861685870f7331 399 Pfam PF07690 Major Facilitator Superfamily 14 353 3.5E-45 T 17-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VI35_12495 2b47aea3849ba72c7e861685870f7331 399 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 6 386 8.6E-62 T 17-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 VI35_00150 a68f77d5648dd4b3ee8a57706d577190 346 Gene3D G3DSA:3.40.50.1820 46 346 3.1E-47 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_00150 a68f77d5648dd4b3ee8a57706d577190 346 Pfam PF12146 Serine aminopeptidase, S33 72 329 2.0E-60 T 17-10-2018 IPR022742 Serine aminopeptidase, S33 VI35_00150 a68f77d5648dd4b3ee8a57706d577190 346 SUPERFAMILY SSF53474 50 345 7.7E-35 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_05620 85740d6a5e9842e2187503e5e4440edc 181 Pfam PF01814 Hemerythrin HHE cation binding domain 4 135 3.3E-10 T 17-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 VI35_05620 85740d6a5e9842e2187503e5e4440edc 181 Gene3D G3DSA:1.20.120.520 1 176 3.4E-18 T 17-10-2018 VI35_03405 6d0fc4a2cd4ab5080fc8275749221bef 71 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 1.5E-16 T 17-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_03405 6d0fc4a2cd4ab5080fc8275749221bef 71 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 1.5E-16 T 17-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_03405 6d0fc4a2cd4ab5080fc8275749221bef 71 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 1.5E-16 T 17-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_03405 6d0fc4a2cd4ab5080fc8275749221bef 71 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 1.5E-16 T 17-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_03405 6d0fc4a2cd4ab5080fc8275749221bef 71 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 21.633 T 17-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_03405 6d0fc4a2cd4ab5080fc8275749221bef 71 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 59 1.5E-24 T 17-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_03405 6d0fc4a2cd4ab5080fc8275749221bef 71 Gene3D G3DSA:1.20.5.1150 16 54 2.8E-21 T 17-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_03405 6d0fc4a2cd4ab5080fc8275749221bef 71 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 15 56 1.0E-14 T 17-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_03405 6d0fc4a2cd4ab5080fc8275749221bef 71 Pfam PF01165 Ribosomal protein S21 4 56 9.9E-22 T 17-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_03405 6d0fc4a2cd4ab5080fc8275749221bef 71 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 17-10-2018 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_20655 60670860f55b91939ad9f00604a5baad 197 SUPERFAMILY SSF52218 26 189 3.69E-30 T 17-10-2018 IPR029039 Flavoprotein-like superfamily VI35_20655 60670860f55b91939ad9f00604a5baad 197 Gene3D G3DSA:3.40.50.360 27 137 4.6E-10 T 17-10-2018 IPR029039 Flavoprotein-like superfamily VI35_20655 60670860f55b91939ad9f00604a5baad 197 Pfam PF12724 Flavodoxin domain 28 174 1.1E-45 T 17-10-2018 IPR026816 Flavodoxin domain VI35_12920 0574d3cd463e6f20ab0b23ee6a68d80b 1394 Gene3D G3DSA:3.40.50.300 237 402 6.3E-49 T 17-10-2018 VI35_12920 0574d3cd463e6f20ab0b23ee6a68d80b 1394 Gene3D G3DSA:1.10.8.60 403 454 6.3E-49 T 17-10-2018 VI35_12920 0574d3cd463e6f20ab0b23ee6a68d80b 1394 SMART SM00382 269 404 1.3E-14 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_12920 0574d3cd463e6f20ab0b23ee6a68d80b 1394 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 273 401 8.2E-28 T 17-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VI35_12920 0574d3cd463e6f20ab0b23ee6a68d80b 1394 SUPERFAMILY SSF48371 1220 1371 1.35E-7 T 17-10-2018 IPR016024 Armadillo-type fold VI35_12920 0574d3cd463e6f20ab0b23ee6a68d80b 1394 Gene3D G3DSA:1.25.10.10 916 1043 8.8E-6 T 17-10-2018 IPR011989 Armadillo-like helical VI35_12920 0574d3cd463e6f20ab0b23ee6a68d80b 1394 Gene3D G3DSA:1.25.10.10 583 797 1.6E-18 T 17-10-2018 IPR011989 Armadillo-like helical VI35_12920 0574d3cd463e6f20ab0b23ee6a68d80b 1394 Gene3D G3DSA:1.25.10.10 1177 1388 5.8E-16 T 17-10-2018 IPR011989 Armadillo-like helical VI35_12920 0574d3cd463e6f20ab0b23ee6a68d80b 1394 Gene3D G3DSA:1.25.10.10 497 570 7.2E-6 T 17-10-2018 IPR011989 Armadillo-like helical VI35_12920 0574d3cd463e6f20ab0b23ee6a68d80b 1394 SUPERFAMILY SSF52540 237 472 1.05E-46 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_12590 effe80d9f5656f65f47a8a5c0245f7c5 440 Pfam PF13726 Na+-H+ antiporter family 2 88 2.0E-35 T 17-10-2018 IPR032813 Putative Na+/H+ antiporter, N-terminal VI35_12590 effe80d9f5656f65f47a8a5c0245f7c5 440 Pfam PF03553 Na+/H+ antiporter family 150 434 9.4E-70 T 17-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 VI35_05035 112983bbd85d41aafc2d7b6c705496e4 87 SUPERFAMILY SSF117991 1 87 1.7E-30 T 17-10-2018 IPR027471 YbeD-like domain superfamily VI35_05035 112983bbd85d41aafc2d7b6c705496e4 87 Gene3D G3DSA:3.30.70.260 1 87 1.3E-31 T 17-10-2018 VI35_05035 112983bbd85d41aafc2d7b6c705496e4 87 Hamap MF_00659 UPF0250 protein YbeD [ybeD]. 1 87 25.446 T 17-10-2018 IPR007454 Uncharacterised protein family UPF0250 VI35_05035 112983bbd85d41aafc2d7b6c705496e4 87 Pfam PF04359 Protein of unknown function (DUF493) 7 87 8.9E-28 T 17-10-2018 IPR007454 Uncharacterised protein family UPF0250 VI35_03250 91ff1a340fe7cfdcd65d439c86d89acc 89 Gene3D G3DSA:1.10.150.250 1 88 3.5E-33 T 17-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily VI35_03250 91ff1a340fe7cfdcd65d439c86d89acc 89 SUPERFAMILY SSF109910 2 79 1.14E-26 T 17-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily VI35_03250 91ff1a340fe7cfdcd65d439c86d89acc 89 Pfam PF03937 Flavinator of succinate dehydrogenase 8 76 2.5E-25 T 17-10-2018 IPR005631 Flavinator of succinate dehydrogenase VI35_00620 ac65d54f9a240522c10f767f71d739ba 152 Pfam PF04982 HPP family 35 146 1.0E-31 T 17-10-2018 IPR007065 HPP VI35_11065 5c1d54da8de8ce10197cb24eeba4cc19 549 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 201 351 2.8E-20 T 17-10-2018 IPR000160 GGDEF domain VI35_11065 5c1d54da8de8ce10197cb24eeba4cc19 549 Gene3D G3DSA:3.30.70.270 197 369 2.6E-34 T 17-10-2018 VI35_11065 5c1d54da8de8ce10197cb24eeba4cc19 549 SUPERFAMILY SSF55073 207 353 4.94E-28 T 17-10-2018 IPR029787 Nucleotide cyclase VI35_11065 5c1d54da8de8ce10197cb24eeba4cc19 549 Pfam PF00990 Diguanylate cyclase, GGDEF domain 203 348 9.6E-28 T 17-10-2018 IPR000160 GGDEF domain VI35_11065 5c1d54da8de8ce10197cb24eeba4cc19 549 SMART SM00267 191 353 8.6E-26 T 17-10-2018 IPR000160 GGDEF domain VI35_02315 a4f862535295648a61d904bdc5dfeeca 291 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 216 227 1.4E-30 T 17-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial VI35_02315 a4f862535295648a61d904bdc5dfeeca 291 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 148 165 1.4E-30 T 17-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial VI35_02315 a4f862535295648a61d904bdc5dfeeca 291 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 228 243 1.4E-30 T 17-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial VI35_02315 a4f862535295648a61d904bdc5dfeeca 291 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 205 215 1.4E-30 T 17-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial VI35_02315 a4f862535295648a61d904bdc5dfeeca 291 Pfam PF01478 Type IV leader peptidase family 140 248 1.2E-28 T 17-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 VI35_02315 a4f862535295648a61d904bdc5dfeeca 291 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 21 127 3.9E-34 T 17-10-2018 IPR010627 Peptidase A24A, N-terminal VI35_03810 c5fa1aae62466d0bfd942a305c0ba42e 224 Gene3D G3DSA:1.10.8.1180 109 179 6.8E-18 T 17-10-2018 VI35_08935 a501e41a618c68c5997945c1e35163d3 169 Pfam PF03589 Antitermination protein 82 157 1.5E-8 T 17-10-2018 IPR003222 Antitermination protein GO:0003677|GO:0006355 VI35_08935 a501e41a618c68c5997945c1e35163d3 169 Gene3D G3DSA:3.30.260.20 23 169 9.8E-34 T 17-10-2018 VI35_09120 05e6fa5fb45a42a26d737a79857b6ddf 204 SUPERFAMILY SSF48498 78 185 6.99E-23 T 17-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VI35_09120 05e6fa5fb45a42a26d737a79857b6ddf 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 1.3E-7 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_09120 05e6fa5fb45a42a26d737a79857b6ddf 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 1.3E-7 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_09120 05e6fa5fb45a42a26d737a79857b6ddf 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 60 6.3E-13 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_09120 05e6fa5fb45a42a26d737a79857b6ddf 204 Gene3D G3DSA:1.10.357.10 53 185 3.3E-27 T 17-10-2018 VI35_09120 05e6fa5fb45a42a26d737a79857b6ddf 204 SUPERFAMILY SSF46689 2 66 5.03E-14 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_09120 05e6fa5fb45a42a26d737a79857b6ddf 204 Gene3D G3DSA:1.10.10.60 5 51 2.2E-19 T 17-10-2018 VI35_10880 7818bc13a41a28ad4c9a6b11ece38d17 431 SUPERFAMILY SSF56349 45 410 4.41E-26 T 17-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VI35_10880 7818bc13a41a28ad4c9a6b11ece38d17 431 Gene3D G3DSA:1.10.150.130 44 187 2.9E-11 T 17-10-2018 IPR010998 Integrase/recombinase, N-terminal VI35_10880 7818bc13a41a28ad4c9a6b11ece38d17 431 Pfam PF00589 Phage integrase family 210 406 3.4E-13 T 17-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VI35_10880 7818bc13a41a28ad4c9a6b11ece38d17 431 Gene3D G3DSA:1.10.443.10 195 407 2.0E-26 T 17-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VI35_12325 f30cabbca065fe31d8fae3ada01751ff 112 Gene3D G3DSA:3.10.20.30 1 112 8.3E-35 T 17-10-2018 IPR012675 Beta-grasp domain superfamily VI35_12325 f30cabbca065fe31d8fae3ada01751ff 112 TIGRFAM TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system 2 110 1.0E-56 T 17-10-2018 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria GO:0009055|GO:0051537 VI35_12325 f30cabbca065fe31d8fae3ada01751ff 112 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 14 91 2.4E-14 T 17-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 VI35_12325 f30cabbca065fe31d8fae3ada01751ff 112 SUPERFAMILY SSF54292 5 104 1.91E-32 T 17-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 VI35_12325 f30cabbca065fe31d8fae3ada01751ff 112 PRINTS PR00355 Adrenodoxin signature 42 52 6.7E-10 T 17-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 VI35_12325 f30cabbca065fe31d8fae3ada01751ff 112 PRINTS PR00355 Adrenodoxin signature 60 74 6.7E-10 T 17-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 VI35_12325 f30cabbca065fe31d8fae3ada01751ff 112 PRINTS PR00355 Adrenodoxin signature 83 91 6.7E-10 T 17-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 VI35_12325 f30cabbca065fe31d8fae3ada01751ff 112 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 42 52 - T 17-10-2018 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 VI35_03080 e16e9c9f98578e8bbc070567944c92a2 153 SUPERFAMILY SSF55729 1 137 4.12E-18 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_03080 e16e9c9f98578e8bbc070567944c92a2 153 Pfam PF00583 Acetyltransferase (GNAT) family 34 122 1.0E-10 T 17-10-2018 IPR000182 GNAT domain VI35_03080 e16e9c9f98578e8bbc070567944c92a2 153 Gene3D G3DSA:3.40.630.30 10 138 1.7E-17 T 17-10-2018 VI35_06725 41c45bfd3da4889b1293192afa3871bb 240 Gene3D G3DSA:3.40.50.150 64 176 6.3E-16 T 17-10-2018 VI35_06725 41c45bfd3da4889b1293192afa3871bb 240 SUPERFAMILY SSF53335 67 187 2.56E-18 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_06725 41c45bfd3da4889b1293192afa3871bb 240 Pfam PF08241 Methyltransferase domain 77 125 3.7E-8 T 17-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 VI35_19315 06266b1bc51988565b29ec5aa7956bd8 284 Pfam PF04228 Putative neutral zinc metallopeptidase 1 281 2.3E-131 T 17-10-2018 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative VI35_20565 f52541b88858d8e5e12f4539de4b3389 196 Pfam PF04932 O-Antigen ligase 4 116 1.0E-8 T 17-10-2018 IPR007016 O-antigen ligase-related VI35_20545 0a6757d536b90e6ca612edd1a5844903 418 Pfam PF03611 PTS system sugar-specific permease component 11 405 3.5E-144 T 17-10-2018 IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 VI35_06140 cee64908f9bca9c96f1b8d8b0b679ba0 166 SUPERFAMILY SSF55961 5 143 2.6E-22 T 17-10-2018 VI35_06140 cee64908f9bca9c96f1b8d8b0b679ba0 166 Gene3D G3DSA:3.30.530.20 1 148 4.6E-22 T 17-10-2018 IPR023393 START-like domain superfamily VI35_06140 cee64908f9bca9c96f1b8d8b0b679ba0 166 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 14 133 4.9E-14 T 17-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like VI35_18305 6340d9ede51306d19de70eeaa3497266 202 Pfam PF10144 Bacterial virulence factor haemolysin 13 153 1.9E-16 T 17-10-2018 IPR019305 Uncharacterised protein family Smp VI35_05120 051914fbc5bf6d5a93e3435d8626ab97 352 Gene3D G3DSA:3.40.50.300 120 326 4.2E-74 T 17-10-2018 VI35_05120 051914fbc5bf6d5a93e3435d8626ab97 352 Pfam PF02562 PhoH-like protein 123 326 1.1E-95 T 17-10-2018 IPR003714 PhoH-like protein GO:0005524 VI35_05120 051914fbc5bf6d5a93e3435d8626ab97 352 SUPERFAMILY SSF52540 94 298 1.08E-40 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_04925 30a774d3f895a64c4b4f0067187b9ab4 130 Pfam PF06476 Protein of unknown function (DUF1090) 11 115 5.9E-33 T 17-10-2018 IPR009468 Protein of unknown function DUF1090 VI35_05030 a4e12b3e2bcdbc82bcab38c77735992a 230 Pfam PF03099 Biotin/lipoate A/B protein ligase family 70 174 1.4E-7 T 17-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 VI35_05030 a4e12b3e2bcdbc82bcab38c77735992a 230 PIRSF PIRSF016262 14 230 5.3E-59 T 17-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 VI35_05030 a4e12b3e2bcdbc82bcab38c77735992a 230 Gene3D G3DSA:3.30.930.10 11 218 5.9E-61 T 17-10-2018 VI35_05030 a4e12b3e2bcdbc82bcab38c77735992a 230 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 81 96 - T 17-10-2018 IPR020605 Octanoyltransferase, conserved site GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 VI35_05030 a4e12b3e2bcdbc82bcab38c77735992a 230 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 85 138 1.0E-15 T 17-10-2018 VI35_05030 a4e12b3e2bcdbc82bcab38c77735992a 230 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 37 218 2.5E-63 T 17-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 VI35_05030 a4e12b3e2bcdbc82bcab38c77735992a 230 Hamap MF_00013 Octanoyltransferase [lipB]. 15 221 37.2 T 17-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 VI35_05030 a4e12b3e2bcdbc82bcab38c77735992a 230 SUPERFAMILY SSF55681 15 220 2.4E-67 T 17-10-2018 VI35_02970 2343d1f0341a37474aa09e78de5b7477 241 Gene3D G3DSA:3.40.190.10 32 230 7.3E-7 T 17-10-2018 VI35_02970 2343d1f0341a37474aa09e78de5b7477 241 Gene3D G3DSA:3.40.190.10 98 197 7.3E-7 T 17-10-2018 VI35_02970 2343d1f0341a37474aa09e78de5b7477 241 SUPERFAMILY SSF53850 5 230 2.17E-13 T 17-10-2018 VI35_17840 33815e155657d4de0aecdcb5c84d845d 187 TIGRFAM TIGR02523 type_IV_pilV: type IV pilus modification protein PilV 10 149 1.3E-19 T 17-10-2018 IPR013362 Pilus modification type IV, PilV VI35_17840 33815e155657d4de0aecdcb5c84d845d 187 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 10 30 2.2E-4 T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_17840 33815e155657d4de0aecdcb5c84d845d 187 Pfam PF07963 Prokaryotic N-terminal methylation motif 7 31 7.7E-7 T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_17840 33815e155657d4de0aecdcb5c84d845d 187 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 10 30 - T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_02195 4a50b52469707993c9e727ce5c0b50aa 285 SUPERFAMILY SSF53955 6 153 2.53E-31 T 17-10-2018 IPR023346 Lysozyme-like domain superfamily VI35_02195 4a50b52469707993c9e727ce5c0b50aa 285 Pfam PF01464 Transglycosylase SLT domain 27 131 3.4E-18 T 17-10-2018 IPR008258 Transglycosylase SLT domain 1 VI35_02195 4a50b52469707993c9e727ce5c0b50aa 285 Gene3D G3DSA:1.10.530.10 15 160 5.8E-27 T 17-10-2018 VI35_10165 cf889e897d61b04dbbf37a6c0649d307 326 Pfam PF03595 Voltage-dependent anion channel 21 306 9.9E-30 T 17-10-2018 IPR004695 Voltage-dependent anion channel GO:0016021|GO:0055085 VI35_10165 cf889e897d61b04dbbf37a6c0649d307 326 Gene3D G3DSA:1.50.10.150 6 313 8.0E-43 T 17-10-2018 IPR038665 Voltage-dependent anion channel superfamily VI35_08960 19c07d09e9c11b98a5f6c12ba9011488 170 SUPERFAMILY SSF55729 29 152 1.57E-14 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_08960 19c07d09e9c11b98a5f6c12ba9011488 170 Pfam PF13673 Acetyltransferase (GNAT) domain 91 151 1.3E-8 T 17-10-2018 IPR000182 GNAT domain VI35_08960 19c07d09e9c11b98a5f6c12ba9011488 170 Gene3D G3DSA:3.40.630.30 12 158 7.9E-28 T 17-10-2018 VI35_03110 0e77c07ad8d73125e8525e1a6d3a4c6f 278 SUPERFAMILY SSF53850 1 257 1.21E-64 T 17-10-2018 VI35_03110 0e77c07ad8d73125e8525e1a6d3a4c6f 278 SMART SM00062 37 259 3.0E-70 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_03110 0e77c07ad8d73125e8525e1a6d3a4c6f 278 Gene3D G3DSA:3.40.190.10 29 252 2.0E-78 T 17-10-2018 VI35_03110 0e77c07ad8d73125e8525e1a6d3a4c6f 278 Gene3D G3DSA:3.40.190.10 127 217 2.0E-78 T 17-10-2018 VI35_03110 0e77c07ad8d73125e8525e1a6d3a4c6f 278 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 38 256 6.5E-52 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_14575 10e9425710b24367dfae25071dedd75a 674 ProSitePatterns PS01303 BCCT family of transporters signature. 319 328 - T 17-10-2018 IPR018093 BCCT transporter, conserved site VI35_14575 10e9425710b24367dfae25071dedd75a 674 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 15 498 1.1E-183 T 17-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 VI35_14575 10e9425710b24367dfae25071dedd75a 674 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 53 501 2.6E-160 T 17-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 VI35_05735 b1891be53e20e58eebef6d31377b0b19 267 Gene3D G3DSA:1.10.10.60 152 258 7.3E-21 T 17-10-2018 VI35_05735 b1891be53e20e58eebef6d31377b0b19 267 SMART SM00342 171 252 1.7E-23 T 17-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VI35_05735 b1891be53e20e58eebef6d31377b0b19 267 SUPERFAMILY SSF46689 206 254 9.41E-9 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_05735 b1891be53e20e58eebef6d31377b0b19 267 Pfam PF12833 Helix-turn-helix domain 178 253 1.9E-17 T 17-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VI35_15110 f8ee9ebb655db44e97a6c1c80fe2aab2 156 Gene3D G3DSA:3.40.30.10 1 156 5.1E-53 T 17-10-2018 VI35_15110 f8ee9ebb655db44e97a6c1c80fe2aab2 156 SUPERFAMILY SSF52833 1 156 1.02E-33 T 17-10-2018 IPR036249 Thioredoxin-like superfamily VI35_15110 f8ee9ebb655db44e97a6c1c80fe2aab2 156 Pfam PF08534 Redoxin 4 153 9.0E-30 T 17-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 VI35_03190 a3aa78d8f1be207fcaeec538ff009143 309 Gene3D G3DSA:3.30.420.40 9 296 1.8E-85 T 17-10-2018 VI35_03190 a3aa78d8f1be207fcaeec538ff009143 309 Gene3D G3DSA:3.30.420.40 128 283 1.8E-85 T 17-10-2018 VI35_03190 a3aa78d8f1be207fcaeec538ff009143 309 ProSitePatterns PS01125 ROK family signature. 140 167 - T 17-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 VI35_03190 a3aa78d8f1be207fcaeec538ff009143 309 SUPERFAMILY SSF53067 9 303 6.74E-64 T 17-10-2018 VI35_03190 a3aa78d8f1be207fcaeec538ff009143 309 Pfam PF00480 ROK family 9 300 6.2E-74 T 17-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 VI35_20435 12ac5a844bd1f8ace2e6d4f01e5a7ef4 237 SUPERFAMILY SSF52317 1 216 9.17E-60 T 17-10-2018 IPR029062 Class I glutamine amidotransferase-like VI35_20435 12ac5a844bd1f8ace2e6d4f01e5a7ef4 237 Pfam PF01965 DJ-1/PfpI family 13 141 1.9E-6 T 17-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 VI35_20435 12ac5a844bd1f8ace2e6d4f01e5a7ef4 237 PIRSF PIRSF006320 1 217 5.7E-107 T 17-10-2018 IPR026041 Glyoxalase ElbB VI35_20435 12ac5a844bd1f8ace2e6d4f01e5a7ef4 237 Gene3D G3DSA:3.40.50.880 1 223 6.5E-87 T 17-10-2018 IPR029062 Class I glutamine amidotransferase-like VI35_02065 4ff97d8ecd78b02bc2780f0e9a05b1b1 263 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 126 261 4.8E-36 T 17-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal VI35_02065 4ff97d8ecd78b02bc2780f0e9a05b1b1 263 Pfam PF13144 Chaperone for flagella basal body P-ring formation 93 260 2.2E-38 T 17-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal VI35_02065 4ff97d8ecd78b02bc2780f0e9a05b1b1 263 Gene3D G3DSA:2.30.30.760 202 263 1.6E-12 T 17-10-2018 VI35_02065 4ff97d8ecd78b02bc2780f0e9a05b1b1 263 SMART SM00858 138 200 8.4E-7 T 17-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 VI35_09300 b27f1f5ba07978cccc8b0fb02fb31a3c 236 SUPERFAMILY SSF56300 16 226 2.71E-34 T 17-10-2018 VI35_09300 b27f1f5ba07978cccc8b0fb02fb31a3c 236 Gene3D G3DSA:3.60.21.10 6 228 1.8E-45 T 17-10-2018 IPR029052 Metallo-dependent phosphatase-like VI35_09300 b27f1f5ba07978cccc8b0fb02fb31a3c 236 Pfam PF00149 Calcineurin-like phosphoesterase 19 196 8.0E-10 T 17-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 VI35_02655 f8a0656d35eceec3473590971b7834df 90 Pfam PF10719 Late competence development protein ComFB 8 84 1.6E-18 T 17-10-2018 IPR019657 Late competence development protein ComFB VI35_19670 63e83001465a6bd541945cb6a0e666a1 323 Gene3D G3DSA:3.40.190.10 119 257 3.4E-97 T 17-10-2018 VI35_19670 63e83001465a6bd541945cb6a0e666a1 323 Gene3D G3DSA:3.40.190.10 32 321 3.4E-97 T 17-10-2018 VI35_19670 63e83001465a6bd541945cb6a0e666a1 323 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 1 321 3.0E-96 T 17-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family VI35_19670 63e83001465a6bd541945cb6a0e666a1 323 SUPERFAMILY SSF53850 28 323 8.86E-78 T 17-10-2018 VI35_19670 63e83001465a6bd541945cb6a0e666a1 323 Pfam PF16868 NMT1-like family 32 321 3.1E-89 T 17-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family VI35_13815 fa0ea189a7d8384a129b72cd0ad49df7 423 Pfam PF02397 Bacterial sugar transferase 235 417 5.0E-65 T 17-10-2018 IPR003362 Bacterial sugar transferase VI35_13815 fa0ea189a7d8384a129b72cd0ad49df7 423 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 167 422 1.2E-98 T 17-10-2018 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase VI35_20540 26af0f28647b4a0a7c58f2a5069c360d 95 SUPERFAMILY SSF52794 1 86 3.09E-19 T 17-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 VI35_20540 26af0f28647b4a0a7c58f2a5069c360d 95 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 2 85 9.2E-13 T 17-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 VI35_20540 26af0f28647b4a0a7c58f2a5069c360d 95 Gene3D G3DSA:3.40.50.2300 1 90 1.7E-19 T 17-10-2018 VI35_16450 df60d6ffdd93f58a63f696a3cf9699de 246 Pfam PF00535 Glycosyl transferase family 2 8 172 5.4E-20 T 17-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 VI35_16450 df60d6ffdd93f58a63f696a3cf9699de 246 SUPERFAMILY SSF53448 6 231 3.13E-34 T 17-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VI35_16450 df60d6ffdd93f58a63f696a3cf9699de 246 Gene3D G3DSA:3.90.550.10 2 236 3.2E-30 T 17-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VI35_18995 a37a16668336c296dc0332f710f5d6f2 92 Pfam PF10387 Protein of unknown function (DUF2442) 5 74 1.6E-7 T 17-10-2018 IPR018841 Protein of unknown function DUF2442 VI35_18995 a37a16668336c296dc0332f710f5d6f2 92 SUPERFAMILY SSF143880 2 75 5.75E-13 T 17-10-2018 IPR036782 NE0471-like, N-terminal VI35_03440 97c7dbd3c5f6dd654e0a9efb8370f687 184 SUPERFAMILY SSF81342 8 180 1.02E-27 T 17-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 VI35_03440 97c7dbd3c5f6dd654e0a9efb8370f687 184 Pfam PF01292 Prokaryotic cytochrome b561 10 170 6.2E-22 T 17-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 VI35_03440 97c7dbd3c5f6dd654e0a9efb8370f687 184 Gene3D G3DSA:1.20.950.20 28 158 1.4E-5 T 17-10-2018 VI35_05435 ef37defc71548558e54c0a9f52e75282 339 TIGRFAM TIGR03243 arg_catab_AOST: arginine and ornithine succinyltransferase subunits 3 337 8.7E-137 T 17-10-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 VI35_05435 ef37defc71548558e54c0a9f52e75282 339 Pfam PF04958 Arginine N-succinyltransferase beta subunit 1 336 8.3E-140 T 17-10-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 VI35_05435 ef37defc71548558e54c0a9f52e75282 339 Gene3D G3DSA:3.40.630.30 1 273 7.0E-113 T 17-10-2018 VI35_05435 ef37defc71548558e54c0a9f52e75282 339 SUPERFAMILY SSF55729 1 338 3.18E-130 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_05435 ef37defc71548558e54c0a9f52e75282 339 TIGRFAM TIGR03244 arg_catab_AstA: arginine N-succinyltransferase 3 338 2.0E-141 T 17-10-2018 IPR017650 Arginine N-succinyltransferase GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 VI35_15610 0cf65f1cafcd4f7591e82d1af052ffd5 78 Gene3D G3DSA:1.10.10.1130 1 78 1.5E-30 T 17-10-2018 VI35_15610 0cf65f1cafcd4f7591e82d1af052ffd5 78 Pfam PF10982 Protein of unknown function (DUF2789) 1 74 3.8E-28 T 17-10-2018 IPR021250 Protein of unknown function DUF2789 VI35_14355 02f8f5b0b056a552a88a91865c16b26f 146 Pfam PF00582 Universal stress protein family 5 124 7.3E-7 T 17-10-2018 IPR006016 UspA VI35_14355 02f8f5b0b056a552a88a91865c16b26f 146 SUPERFAMILY SSF52402 1 136 2.43E-10 T 17-10-2018 VI35_14355 02f8f5b0b056a552a88a91865c16b26f 146 Gene3D G3DSA:3.40.50.620 4 135 4.9E-9 T 17-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VI35_06445 836a4c3532188891cd184b0bc040a418 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 57 3.9E-15 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_06445 836a4c3532188891cd184b0bc040a418 196 SUPERFAMILY SSF46689 4 76 1.9E-16 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_06445 836a4c3532188891cd184b0bc040a418 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 6.5E-11 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_06445 836a4c3532188891cd184b0bc040a418 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 6.5E-11 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_06445 836a4c3532188891cd184b0bc040a418 196 Gene3D G3DSA:1.10.357.10 2 191 1.2E-49 T 17-10-2018 VI35_20555 4d4111ed9d90000e05e8d5b7238ab2ff 231 SUPERFAMILY SSF53448 6 221 5.62E-33 T 17-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VI35_20555 4d4111ed9d90000e05e8d5b7238ab2ff 231 Pfam PF04488 Glycosyltransferase sugar-binding region containing DXD motif 63 93 4.3E-6 T 17-10-2018 IPR007577 Glycosyltransferase, DXD sugar-binding motif VI35_20555 4d4111ed9d90000e05e8d5b7238ab2ff 231 Gene3D G3DSA:3.90.550.20 4 161 5.5E-23 T 17-10-2018 VI35_03900 c33f8502f6772d2a42834eef3239fa89 284 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 26 116 6.4E-27 T 17-10-2018 IPR010221 VCBS repeat VI35_03900 c33f8502f6772d2a42834eef3239fa89 284 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 134 224 4.3E-27 T 17-10-2018 IPR010221 VCBS repeat VI35_02955 88161783aea6537186746290f432b3d6 229 Pfam PF04172 LrgB-like family 14 224 5.6E-69 T 17-10-2018 IPR007300 CidB/LrgB family VI35_06670 2e98228142e6aec274f2235469688cfc 170 Pfam PF11993 Ribosomal S4P (gammaproteobacterial) 6 162 6.2E-36 T 17-10-2018 IPR021879 Ribosomal S4P (gammaproteobacterial) VI35_17590 f5dd797bce6673a9bab27b096358cc6a 297 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 287 2.2E-13 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_17590 f5dd797bce6673a9bab27b096358cc6a 297 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 32 288 9.5E-117 T 17-10-2018 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 VI35_17590 f5dd797bce6673a9bab27b096358cc6a 297 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 31 286 1.4E-96 T 17-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 VI35_17590 f5dd797bce6673a9bab27b096358cc6a 297 Gene3D G3DSA:1.10.3720.10 33 290 1.7E-60 T 17-10-2018 IPR035906 MetI-like superfamily VI35_17590 f5dd797bce6673a9bab27b096358cc6a 297 SUPERFAMILY SSF161098 31 281 2.09E-54 T 17-10-2018 IPR035906 MetI-like superfamily VI35_14570 e9c4a383f74c6e345b29edd2d4bcf0ce 87 Pfam PF10048 Predicted integral membrane protein (DUF2282) 34 84 3.3E-23 T 17-10-2018 IPR018740 Protein of unknown function DUF2282, integral membrane VI35_09815 15236430696c95c96f24207dafb95235 260 SUPERFAMILY SSF48371 67 252 6.14E-34 T 17-10-2018 IPR016024 Armadillo-type fold VI35_09815 15236430696c95c96f24207dafb95235 260 Gene3D G3DSA:1.25.40.290 133 251 3.0E-28 T 17-10-2018 VI35_00535 ef0f71feac956f2eb99c0c4170645bed 87 ProDom PD029038 YIHD CYTOPLASMIC ENZYME Y3814 GLYCOGEN YPO0013A HI0845 DIRECT ORF1 UNCHARACTERIZED 1 86 1.0E-29 T 17-10-2018 IPR009383 Protein of unknown function DUF1040 VI35_00535 ef0f71feac956f2eb99c0c4170645bed 87 Gene3D G3DSA:1.10.1580.20 1 87 5.8E-41 T 17-10-2018 IPR038134 YihD-like superfamily VI35_00535 ef0f71feac956f2eb99c0c4170645bed 87 Pfam PF06288 Protein of unknown function (DUF1040) 1 86 7.1E-44 T 17-10-2018 IPR009383 Protein of unknown function DUF1040 VI35_19710 52391657208975896a6ea86fef870909 128 Pfam PF04247 Invasion gene expression up-regulator, SirB 5 122 8.6E-39 T 17-10-2018 IPR007360 Invasion gene expression up-regulator, SirB VI35_19710 52391657208975896a6ea86fef870909 128 PIRSF PIRSF005610 1 121 3.5E-27 T 17-10-2018 IPR007360 Invasion gene expression up-regulator, SirB VI35_03950 01778b2f3033f9456bf8e44653993582 397 Hamap MF_01529 Multidrug resistance protein MdtH [mdtH]. 1 396 38.514 T 17-10-2018 IPR022855 Multidrug resistance protein MdtH VI35_03950 01778b2f3033f9456bf8e44653993582 397 SUPERFAMILY SSF103473 6 383 3.14E-47 T 17-10-2018 IPR036259 MFS transporter superfamily VI35_03950 01778b2f3033f9456bf8e44653993582 397 Pfam PF07690 Major Facilitator Superfamily 18 347 2.9E-35 T 17-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VI35_03950 01778b2f3033f9456bf8e44653993582 397 Gene3D G3DSA:1.20.1250.20 3 385 2.0E-47 T 17-10-2018 VI35_06030 07310e1a2df510a75ce0d1c1170738d0 246 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 45 227 4.2E-81 T 17-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 VI35_06030 07310e1a2df510a75ce0d1c1170738d0 246 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 62 82 2.5E-61 T 17-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 VI35_06030 07310e1a2df510a75ce0d1c1170738d0 246 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 45 62 2.5E-61 T 17-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 VI35_06030 07310e1a2df510a75ce0d1c1170738d0 246 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 156 182 2.5E-61 T 17-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 VI35_06030 07310e1a2df510a75ce0d1c1170738d0 246 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 121 141 2.5E-61 T 17-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 VI35_06030 07310e1a2df510a75ce0d1c1170738d0 246 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 204 228 2.5E-61 T 17-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 VI35_06030 07310e1a2df510a75ce0d1c1170738d0 246 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 100 120 2.5E-61 T 17-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 VI35_06030 07310e1a2df510a75ce0d1c1170738d0 246 Pfam PF01578 Cytochrome C assembly protein 27 184 6.9E-33 T 17-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 VI35_11250 1c90f36f5d70d51a481ed05282662fb8 75 Pfam PF14117 Domain of unknown function (DUF4287) 9 65 4.7E-25 T 17-10-2018 IPR025629 Protein of unknown function DUF4287 VI35_01485 ee4bcde8120a6c35471c4854991e0cdd 105 Pfam PF07383 Protein of unknown function (DUF1496) 35 85 7.9E-21 T 17-10-2018 IPR009971 Protein of unknown function DUF1496 VI35_13845 d1cd7b4a685ba431b170f6a4101951f5 186 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 127 162 4.5E-11 T 17-10-2018 IPR001451 Hexapeptide repeat VI35_13845 d1cd7b4a685ba431b170f6a4101951f5 186 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 52 77 0.25 T 17-10-2018 IPR001451 Hexapeptide repeat VI35_13845 d1cd7b4a685ba431b170f6a4101951f5 186 SUPERFAMILY SSF51161 33 184 5.27E-40 T 17-10-2018 IPR011004 Trimeric LpxA-like superfamily VI35_13845 d1cd7b4a685ba431b170f6a4101951f5 186 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 136 164 - T 17-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 VI35_13845 d1cd7b4a685ba431b170f6a4101951f5 186 Gene3D G3DSA:2.160.10.10 25 185 5.1E-41 T 17-10-2018 VI35_10870 66cde216406b5b3da5c0448f02275c1d 214 Pfam PF04403 Paraquat-inducible protein A 47 197 3.8E-32 T 17-10-2018 IPR007498 Intermembrane transport protein PqiA-like VI35_11210 3582d3bb0a64acce52534d81e0106ef0 134 ProDom PD080812 PLASMID Y4OB BMEII097 AGR_L_107P MLL2216 BMEII0977 ATU4831 6 114 2.0E-32 T 17-10-2018 IPR020358 Uncharacterised protein family Y4oB VI35_11210 3582d3bb0a64acce52534d81e0106ef0 134 Pfam PF09722 Protein of unknown function (DUF2384) 79 131 3.4E-6 T 17-10-2018 IPR024467 Domain of unknown function DUF2384 VI35_15700 e2b10056a262bb0349f6f7a9f6ed2f8f 74 Pfam PF04400 (Na+)-NQR maturation NqrM 22 63 2.0E-23 T 17-10-2018 IPR007495 (Na+)-NQR maturation factor NqrM VI35_05495 da70bb1b3691ab585fbc872ad1a9d823 110 SMART SM01022 11 109 1.5E-29 T 17-10-2018 IPR007374 ASCH domain VI35_05495 da70bb1b3691ab585fbc872ad1a9d823 110 Pfam PF04266 ASCH domain 12 107 8.2E-16 T 17-10-2018 IPR007374 ASCH domain VI35_05495 da70bb1b3691ab585fbc872ad1a9d823 110 Gene3D G3DSA:2.30.130.30 8 108 1.7E-38 T 17-10-2018 VI35_05495 da70bb1b3691ab585fbc872ad1a9d823 110 SUPERFAMILY SSF88697 8 107 1.59E-30 T 17-10-2018 IPR015947 PUA-like superfamily VI35_20785 f7a25485ea124798969096b90e7482e7 257 SUPERFAMILY SSF53850 52 246 1.08E-11 T 17-10-2018 VI35_20785 f7a25485ea124798969096b90e7482e7 257 Gene3D G3DSA:3.40.190.10 53 244 1.3E-6 T 17-10-2018 VI35_20785 f7a25485ea124798969096b90e7482e7 257 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 52 246 7.8E-6 T 17-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VI35_20785 f7a25485ea124798969096b90e7482e7 257 Gene3D G3DSA:3.40.190.10 110 210 1.3E-6 T 17-10-2018 VI35_02975 e0fe59b10ecc32d84fdd3482b6ca86d8 277 SUPERFAMILY SSF53850 92 234 1.12E-11 T 17-10-2018 VI35_18485 b79d2f9788c7e4055af7b9e1f56d71fa 135 Gene3D G3DSA:1.20.120.1490 27 134 3.4E-17 T 17-10-2018 VI35_18485 b79d2f9788c7e4055af7b9e1f56d71fa 135 Pfam PF07813 LTXXQ motif family protein 34 126 1.6E-7 T 17-10-2018 IPR012899 LTXXQ motif family protein GO:0042597 VI35_11260 f1f67333651f6970f03295a90ee23b02 121 SUPERFAMILY SSF54593 5 119 5.91E-20 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_11260 f1f67333651f6970f03295a90ee23b02 121 Gene3D G3DSA:3.10.180.10 4 120 1.1E-22 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_15345 2319b42cc04c343d9506e643df7445aa 181 SUPERFAMILY SSF55166 66 181 6.02E-33 T 17-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 VI35_15345 2319b42cc04c343d9506e643df7445aa 181 Pfam PF05951 Bacterial protein of unknown function (DUF882) 34 181 8.3E-62 T 17-10-2018 IPR010275 Protein of unknown function DUF882 VI35_15345 2319b42cc04c343d9506e643df7445aa 181 Gene3D G3DSA:3.30.1380.10 65 181 4.6E-11 T 17-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 VI35_08170 7d46b1b4ee3f6aee2687a06707818af1 273 Pfam PF02754 Cysteine-rich domain 139 223 1.6E-11 T 17-10-2018 IPR004017 Cysteine-rich domain VI35_08170 7d46b1b4ee3f6aee2687a06707818af1 273 Pfam PF02754 Cysteine-rich domain 16 94 3.7E-10 T 17-10-2018 IPR004017 Cysteine-rich domain VI35_12125 64e7644dd8ae63c7d4a92ba1342e2a5a 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 4.6E-6 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_12125 64e7644dd8ae63c7d4a92ba1342e2a5a 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 1 17 4.6E-6 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_12125 64e7644dd8ae63c7d4a92ba1342e2a5a 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 4.6E-6 T 17-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VI35_12125 64e7644dd8ae63c7d4a92ba1342e2a5a 235 Gene3D G3DSA:3.40.50.720 3 235 7.6E-24 T 17-10-2018 VI35_12125 64e7644dd8ae63c7d4a92ba1342e2a5a 235 SUPERFAMILY SSF51735 7 231 1.17E-21 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_08975 9d390c27e6b9a992c733e1806732f644 163 SUPERFAMILY SSF53955 6 160 1.33E-33 T 17-10-2018 IPR023346 Lysozyme-like domain superfamily VI35_08975 9d390c27e6b9a992c733e1806732f644 163 Gene3D G3DSA:1.10.530.40 1 162 1.2E-36 T 17-10-2018 VI35_08975 9d390c27e6b9a992c733e1806732f644 163 Pfam PF00959 Phage lysozyme 42 137 2.4E-10 T 17-10-2018 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 VI35_13725 bef2080585b9d101d9cabde88291274c 130 Pfam PF11042 Protein of unknown function (DUF2750) 23 121 9.8E-36 T 17-10-2018 IPR021284 Protein of unknown function DUF2750 VI35_01845 88cd6eee144b2786d5ced4dff5d7780d 288 Gene3D G3DSA:3.40.50.300 1 166 5.3E-6 T 17-10-2018 VI35_01845 88cd6eee144b2786d5ced4dff5d7780d 288 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 1 283 41.201 T 17-10-2018 IPR005337 RapZ-like family GO:0005524 VI35_01845 88cd6eee144b2786d5ced4dff5d7780d 288 PIRSF PIRSF005052 1 286 4.0E-110 T 17-10-2018 IPR005337 RapZ-like family GO:0005524 VI35_01845 88cd6eee144b2786d5ced4dff5d7780d 288 Pfam PF03668 P-loop ATPase protein family 1 284 6.7E-111 T 17-10-2018 IPR005337 RapZ-like family GO:0005524 VI35_01845 88cd6eee144b2786d5ced4dff5d7780d 288 SUPERFAMILY SSF52540 1 154 1.05E-11 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_10310 3841951f20e5b122bcddbac3774f935f 102 ProDom PD020447 UPF0263 YCIU HD0986 VV1228 UNCHARACTERIZED 3D-STRUCTURE VV13059 BCR PM0536 VC1208 5 99 5.0E-19 T 17-10-2018 IPR007376 dsDNA mimic, putative VI35_10310 3841951f20e5b122bcddbac3774f935f 102 PIRSF PIRSF004916 1 101 5.2E-27 T 17-10-2018 IPR007376 dsDNA mimic, putative VI35_10310 3841951f20e5b122bcddbac3774f935f 102 SUPERFAMILY SSF102816 4 99 4.71E-27 T 17-10-2018 IPR036763 Putative dsDNA mimic superfamily VI35_10310 3841951f20e5b122bcddbac3774f935f 102 Pfam PF04269 Protein of unknown function, DUF440 3 99 3.4E-39 T 17-10-2018 IPR007376 dsDNA mimic, putative VI35_10310 3841951f20e5b122bcddbac3774f935f 102 Gene3D G3DSA:3.10.450.140 3 100 7.3E-33 T 17-10-2018 IPR036763 Putative dsDNA mimic superfamily VI35_00575 a0456a22780eabccc3693b8dda6b85a8 318 SMART SM00563 89 231 2.3E-21 T 17-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VI35_00575 a0456a22780eabccc3693b8dda6b85a8 318 Pfam PF01553 Acyltransferase 77 215 1.2E-13 T 17-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VI35_00575 a0456a22780eabccc3693b8dda6b85a8 318 SUPERFAMILY SSF69593 19 288 6.15E-30 T 17-10-2018 VI35_00210 19c6734b7b9fef1627ff37cfbb179345 309 SUPERFAMILY SSF103481 203 298 6.41E-13 T 17-10-2018 VI35_00210 19c6734b7b9fef1627ff37cfbb179345 309 SUPERFAMILY SSF103481 47 147 1.7E-11 T 17-10-2018 VI35_00210 19c6734b7b9fef1627ff37cfbb179345 309 Pfam PF00892 EamA-like transporter family 157 290 2.0E-15 T 17-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VI35_00210 19c6734b7b9fef1627ff37cfbb179345 309 Pfam PF00892 EamA-like transporter family 12 144 7.7E-19 T 17-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VI35_08370 32b83626dec19cb34dddd4aabb9bce59 56 Pfam PF15538 Bacterial toxin 46 3 56 2.8E-17 T 17-10-2018 IPR028238 Bacterial toxin 46 VI35_04965 e759ee882b9ce881ccee73846ae8fa9f 466 SUPERFAMILY SSF111283 10 465 6.28E-111 T 17-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 VI35_04965 e759ee882b9ce881ccee73846ae8fa9f 466 Gene3D G3DSA:3.30.2290.10 7 227 1.8E-17 T 17-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal VI35_04965 e759ee882b9ce881ccee73846ae8fa9f 466 Pfam PF01523 Putative modulator of DNA gyrase 26 319 4.0E-57 T 17-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 VI35_16555 c9814fde134530cd794f3ca05b86ac91 103 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 4.7E-43 T 17-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_16555 c9814fde134530cd794f3ca05b86ac91 103 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 27.277 T 17-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_16555 c9814fde134530cd794f3ca05b86ac91 103 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 1.9E-38 T 17-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_16555 c9814fde134530cd794f3ca05b86ac91 103 SUPERFAMILY SSF141091 1 102 4.32E-38 T 17-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VI35_16555 c9814fde134530cd794f3ca05b86ac91 103 ProSitePatterns PS01169 Ribosomal protein L21 signature. 72 94 - T 17-10-2018 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 VI35_07910 92adf202f14b38222480a09676d1aff9 184 Pfam PF10721 Protein of unknown function (DUF2514) 28 176 2.3E-37 T 17-10-2018 IPR019659 Protein of unknown function DUF2514 VI35_17030 760e1b8f060e5278080c7426d48da81d 373 SUPERFAMILY SSF51395 29 364 3.97E-111 T 17-10-2018 VI35_17030 760e1b8f060e5278080c7426d48da81d 373 Gene3D G3DSA:3.20.20.70 24 373 2.3E-126 T 17-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VI35_17030 760e1b8f060e5278080c7426d48da81d 373 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 32 360 1.4E-87 T 17-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 VI35_07080 84f6476a9baf7e556ef575a427ed5883 37 Pfam PF08173 Membrane bound YbgT-like protein 1 27 4.6E-12 T 17-10-2018 IPR012994 Membrane bound YbgT-like VI35_04360 d531248611396fa83aa10ee058e78d23 175 Pfam PF01618 MotA/TolQ/ExbB proton channel family 65 169 1.7E-21 T 17-10-2018 IPR002898 MotA/TolQ/ExbB proton channel VI35_06185 ea1d055adcef47edccfd4a0b625a97ae 173 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 25 155 4.2E-30 T 17-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ VI35_12795 657e957fb9f7720e6ba164210a43e8d3 708 TIGRFAM TIGR03504 FimV_Cterm: FimV C-terminal domain 664 707 1.9E-18 T 17-10-2018 IPR020011 Motility protein FimV, C-terminal VI35_12795 657e957fb9f7720e6ba164210a43e8d3 708 Gene3D G3DSA:1.20.58.2200 646 707 1.5E-19 T 17-10-2018 IPR038440 FimV, C-terminal domain superfamily VI35_12795 657e957fb9f7720e6ba164210a43e8d3 708 TIGRFAM TIGR03505 FimV_core: FimV N-terminal domain 84 157 6.3E-25 T 17-10-2018 IPR020012 Motility protein FimV, N-terminal VI35_05000 a7f7a88cd337619e2bb53636dc466a9a 167 Pfam PF00583 Acetyltransferase (GNAT) family 45 128 5.4E-10 T 17-10-2018 IPR000182 GNAT domain VI35_05000 a7f7a88cd337619e2bb53636dc466a9a 167 SUPERFAMILY SSF55729 1 145 8.54E-29 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_05000 a7f7a88cd337619e2bb53636dc466a9a 167 Gene3D G3DSA:3.40.630.30 1 166 1.4E-50 T 17-10-2018 VI35_06245 59425ec574fe6c6baab117b60c4f1460 311 Gene3D G3DSA:3.90.245.10 1 311 1.5E-132 T 17-10-2018 IPR036452 Ribonucleoside hydrolase-like VI35_06245 59425ec574fe6c6baab117b60c4f1460 311 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 4 300 3.5E-93 T 17-10-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain VI35_06245 59425ec574fe6c6baab117b60c4f1460 311 SUPERFAMILY SSF53590 4 308 3.01E-106 T 17-10-2018 IPR036452 Ribonucleoside hydrolase-like VI35_06245 59425ec574fe6c6baab117b60c4f1460 311 ProSitePatterns PS01247 Inosine-uridine preferring nucleoside hydrolase family signature. 8 18 - T 17-10-2018 IPR015910 Inosine/uridine-preferring nucleoside hydrolase, conserved site GO:0016799 VI35_03625 5e3c3952b9565813cbb96a7c2719eb0a 257 PRINTS PR00164 ABC-2 type transport system membrane protein signature 177 196 5.8E-10 T 17-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 VI35_03625 5e3c3952b9565813cbb96a7c2719eb0a 257 PRINTS PR00164 ABC-2 type transport system membrane protein signature 59 81 5.8E-10 T 17-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 VI35_03625 5e3c3952b9565813cbb96a7c2719eb0a 257 PRINTS PR00164 ABC-2 type transport system membrane protein signature 139 163 5.8E-10 T 17-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 VI35_03625 5e3c3952b9565813cbb96a7c2719eb0a 257 PRINTS PR00164 ABC-2 type transport system membrane protein signature 197 216 5.8E-10 T 17-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 VI35_03625 5e3c3952b9565813cbb96a7c2719eb0a 257 PIRSF PIRSF006648 14 254 4.4E-24 T 17-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 VI35_03625 5e3c3952b9565813cbb96a7c2719eb0a 257 Pfam PF01061 ABC-2 type transporter 10 219 1.1E-37 T 17-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 VI35_06895 47b1dd72d579d66e6247dc691f873c24 251 SUPERFAMILY SSF69572 5 249 1.09E-83 T 17-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 VI35_06895 47b1dd72d579d66e6247dc691f873c24 251 TIGRFAM TIGR02355 moeB: molybdopterin synthase sulfurylase MoeB 9 248 6.5E-116 T 17-10-2018 IPR012730 Molybdopterin synthase sulfurylase MoeB GO:0006777 MetaCyc: PWY-6823 VI35_06895 47b1dd72d579d66e6247dc691f873c24 251 Pfam PF00899 ThiF family 13 245 1.7E-61 T 17-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 VI35_06895 47b1dd72d579d66e6247dc691f873c24 251 Gene3D G3DSA:3.40.50.720 5 251 5.0E-85 T 17-10-2018 VI35_12975 acac8f6127a3cf671d83d95c2b568bb3 594 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 201 292 3.7E-9 T 17-10-2018 IPR010221 VCBS repeat VI35_12975 acac8f6127a3cf671d83d95c2b568bb3 594 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 455 546 3.3E-9 T 17-10-2018 IPR010221 VCBS repeat VI35_20755 f97ee20ccc755bb0d0d638dcee7e5270 186 Pfam PF00857 Isochorismatase family 8 145 8.6E-41 T 17-10-2018 IPR000868 Isochorismatase-like GO:0003824 VI35_20755 f97ee20ccc755bb0d0d638dcee7e5270 186 Gene3D G3DSA:3.40.50.850 3 184 7.0E-51 T 17-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 VI35_20755 f97ee20ccc755bb0d0d638dcee7e5270 186 SUPERFAMILY SSF52499 4 181 5.49E-50 T 17-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 VI35_18415 0896b517ed5d4dac578b5ed1d8df21d4 221 Pfam PF09335 SNARE associated Golgi protein 48 172 3.3E-22 T 17-10-2018 IPR032816 SNARE associated Golgi protein VI35_03805 2f1b68696ba7ed0b3322c05f2fe6d41b 284 SMART SM00382 134 272 8.1E-5 T 17-10-2018 IPR003593 AAA+ ATPase domain VI35_03805 2f1b68696ba7ed0b3322c05f2fe6d41b 284 Pfam PF01695 IstB-like ATP binding protein 136 256 9.9E-14 T 17-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 VI35_03805 2f1b68696ba7ed0b3322c05f2fe6d41b 284 SUPERFAMILY SSF52540 96 257 3.88E-18 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_03805 2f1b68696ba7ed0b3322c05f2fe6d41b 284 Gene3D G3DSA:3.40.50.300 84 262 2.2E-25 T 17-10-2018 VI35_04560 21e63cbd49d7fb1aa954e423d412e7e6 382 Gene3D G3DSA:1.10.3720.10 158 346 1.5E-36 T 17-10-2018 IPR035906 MetI-like superfamily VI35_04560 21e63cbd49d7fb1aa954e423d412e7e6 382 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 181 339 2.3E-25 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_04560 21e63cbd49d7fb1aa954e423d412e7e6 382 SUPERFAMILY SSF161098 160 342 5.1E-43 T 17-10-2018 IPR035906 MetI-like superfamily VI35_10450 a08aa1e9cd7427f545fd14fad3b62c5d 294 Pfam PF03547 Membrane transport protein 139 284 3.7E-10 T 17-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 VI35_09685 646d0421248914dbd1715ed57d2e8814 297 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 292 3.4E-21 T 17-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VI35_09685 646d0421248914dbd1715ed57d2e8814 297 SUPERFAMILY SSF161098 91 277 5.76E-23 T 17-10-2018 IPR035906 MetI-like superfamily VI35_09685 646d0421248914dbd1715ed57d2e8814 297 Gene3D G3DSA:1.10.3720.10 86 293 1.8E-18 T 17-10-2018 IPR035906 MetI-like superfamily VI35_09685 646d0421248914dbd1715ed57d2e8814 297 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 15 67 3.9E-12 T 17-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain VI35_05485 ae586ca7031211b9dd33c468f916b1ea 120 Pfam PF07784 Protein of unknown function (DUF1622) 35 97 1.3E-23 T 17-10-2018 IPR012427 Protein of unknown function DUF1622 VI35_12245 ff017227aea815d2f5fac279ff956681 487 Pfam PF00361 Proton-conducting membrane transporter 122 420 1.0E-76 T 17-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VI35_12245 ff017227aea815d2f5fac279ff956681 487 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 9 475 7.7E-130 T 17-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 VI35_12245 ff017227aea815d2f5fac279ff956681 487 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 6 475 17.649 T 17-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 VI35_07440 4b35cb091f028c66f2bee4c4a272edf8 182 SUPERFAMILY SSF55729 18 180 6.42E-32 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_07440 4b35cb091f028c66f2bee4c4a272edf8 182 Pfam PF13302 Acetyltransferase (GNAT) domain 19 155 9.7E-23 T 17-10-2018 IPR000182 GNAT domain VI35_07440 4b35cb091f028c66f2bee4c4a272edf8 182 Gene3D G3DSA:3.40.630.30 15 179 6.7E-36 T 17-10-2018 VI35_03055 e7a2c420efa120ee425f9d088220d807 130 Pfam PF14552 Tautomerase enzyme 38 119 6.8E-24 T 17-10-2018 IPR037479 Tautomerase, MSAD family VI35_03055 e7a2c420efa120ee425f9d088220d807 130 Gene3D G3DSA:3.30.429.10 1 128 4.8E-38 T 17-10-2018 IPR014347 Tautomerase/MIF superfamily VI35_03055 e7a2c420efa120ee425f9d088220d807 130 SUPERFAMILY SSF55331 2 123 1.57E-30 T 17-10-2018 IPR014347 Tautomerase/MIF superfamily VI35_11425 b607a1082ba0daf61aeff69e172dc060 305 Pfam PF00892 EamA-like transporter family 5 134 1.4E-10 T 17-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VI35_11425 b607a1082ba0daf61aeff69e172dc060 305 Pfam PF00892 EamA-like transporter family 149 285 5.1E-12 T 17-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VI35_11425 b607a1082ba0daf61aeff69e172dc060 305 SUPERFAMILY SSF103481 186 288 4.71E-7 T 17-10-2018 VI35_11425 b607a1082ba0daf61aeff69e172dc060 305 SUPERFAMILY SSF103481 35 136 1.23E-10 T 17-10-2018 VI35_16070 ec0c187467015681a2980f3d56801787 466 Gene3D G3DSA:2.40.160.10 48 455 6.2E-30 T 17-10-2018 IPR023614 Porin domain superfamily VI35_16070 ec0c187467015681a2980f3d56801787 466 Pfam PF03573 outer membrane porin, OprD family 43 437 1.3E-24 T 17-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 VI35_01510 e780e6acfc876b9a33bc257579268fb3 146 Pfam PF09980 Predicted membrane protein (DUF2214) 6 144 8.9E-35 T 17-10-2018 IPR018706 Protein of unknown function DUF2214, membrane VI35_08885 cae11059aa5cd0220f491cddeeb56c91 163 Pfam PF06892 Phage regulatory protein CII (CP76) 13 151 3.0E-12 T 17-10-2018 IPR009679 Bacteriophage 186, CII VI35_00950 820559787838f31609652158c11244f9 335 Gene3D G3DSA:2.70.98.10 1 332 3.6E-102 T 17-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 VI35_00950 820559787838f31609652158c11244f9 335 SUPERFAMILY SSF74650 2 331 7.53E-90 T 17-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 VI35_00950 820559787838f31609652158c11244f9 335 PIRSF PIRSF005096 1 333 3.6E-100 T 17-10-2018 IPR015443 Aldose 1-epimerase GO:0016853|GO:0019318 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 VI35_00950 820559787838f31609652158c11244f9 335 Pfam PF01263 Aldose 1-epimerase 3 330 1.1E-67 T 17-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 VI35_10900 536e8fdf99ef4e500a5e270dcc91f9b9 549 Pfam PF11949 Protein of unknown function (DUF3466) 162 546 4.8E-41 T 17-10-2018 IPR022562 Protein of unknown function DUF3466 VI35_10900 536e8fdf99ef4e500a5e270dcc91f9b9 549 TIGRFAM TIGR03501 GlyGly_CTERM: GlyGly-CTERM domain 527 547 6.5E-5 T 17-10-2018 IPR020008 GlyGly-CTERM domain VI35_05100 b7127db066082a10bb754e75140363ec 162 Pfam PF07295 Zinc-ribbon containing domain 18 159 4.7E-46 T 17-10-2018 IPR009912 Zinc-ribbon containing domain VI35_02110 f53739f39a391e161bcc3d0a1b9894b8 132 Pfam PF10135 Rod binding protein 47 97 2.0E-10 T 17-10-2018 IPR019301 Flagellar protein FlgJ, N-terminal VI35_18715 6a473567726ae6855b6f674d7d5dc524 195 Gene3D G3DSA:3.40.50.1820 4 195 1.3E-51 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_18715 6a473567726ae6855b6f674d7d5dc524 195 Pfam PF05728 Uncharacterised protein family (UPF0227) 5 193 1.9E-56 T 17-10-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA VI35_18715 6a473567726ae6855b6f674d7d5dc524 195 SUPERFAMILY SSF53474 3 193 2.92E-18 T 17-10-2018 IPR029058 Alpha/Beta hydrolase fold VI35_12900 e17eec3d4475a2e71c610f14460937cd 615 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 236 325 1.4E-13 T 17-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VI35_12900 e17eec3d4475a2e71c610f14460937cd 615 SUPERFAMILY SSF52540 4 328 2.16E-19 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_12900 e17eec3d4475a2e71c610f14460937cd 615 Gene3D G3DSA:3.40.50.300 217 359 9.9E-13 T 17-10-2018 VI35_12900 e17eec3d4475a2e71c610f14460937cd 615 Gene3D G3DSA:3.40.50.300 1 134 8.4E-7 T 17-10-2018 VI35_05925 9633d35e15ab3a67a533c7fe1b887e91 127 Pfam PF04347 Flagellar biosynthesis protein, FliO 47 121 1.3E-18 T 17-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 VI35_05925 9633d35e15ab3a67a533c7fe1b887e91 127 TIGRFAM TIGR03500 FliO_TIGR: flagellar biosynthetic protein FliO 35 101 6.3E-21 T 17-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 VI35_09645 0f6086745508074f7097ecee967c16fa 163 Pfam PF02674 Colicin V production protein 4 142 1.0E-36 T 17-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 VI35_06565 c9af4fce54fb0b1c78eff8075e18c09c 98 Pfam PF01402 Ribbon-helix-helix protein, copG family 52 88 2.5E-5 T 17-10-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 VI35_16685 5b6f1a6a2b1a7ca126662c2c82e36aab 230 Gene3D G3DSA:3.40.1550.10 14 178 5.5E-20 T 17-10-2018 IPR028976 CheC-like superfamily VI35_16685 5b6f1a6a2b1a7ca126662c2c82e36aab 230 Pfam PF11813 Protein of unknown function (DUF3334) 10 230 2.5E-116 T 17-10-2018 IPR024513 Protein of unknown function DUF3334 VI35_16685 5b6f1a6a2b1a7ca126662c2c82e36aab 230 SUPERFAMILY SSF103039 15 178 4.58E-23 T 17-10-2018 IPR028976 CheC-like superfamily VI35_08285 60e41677c81c8e84bd76109c0f738215 308 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 1 305 1.5E-88 T 17-10-2018 IPR007296 Domain of unknown function DUF403 VI35_16490 4ef2951cb4c5dd28b9ae21c97989f60f 336 Pfam PF01636 Phosphotransferase enzyme family 23 236 8.9E-21 T 17-10-2018 IPR002575 Aminoglycoside phosphotransferase VI35_16490 4ef2951cb4c5dd28b9ae21c97989f60f 336 SUPERFAMILY SSF56112 8 305 1.26E-39 T 17-10-2018 IPR011009 Protein kinase-like domain superfamily VI35_16490 4ef2951cb4c5dd28b9ae21c97989f60f 336 Gene3D G3DSA:3.90.1200.10 88 329 1.5E-62 T 17-10-2018 VI35_16490 4ef2951cb4c5dd28b9ae21c97989f60f 336 Gene3D G3DSA:3.30.200.20 3 87 2.5E-11 T 17-10-2018 VI35_11760 b17544807eab68957939c8ee3f24ddfc 87 TIGRFAM TIGR03661 T1SS_VCA0849: type I secretion C-terminal target domain (VC_A0849 subclass) 1 83 6.3E-12 T 17-10-2018 IPR019960 Type I secretion C-terminal target domain, VC_A0849 subclass VI35_07075 2b31634c23838d00357864385d2645a7 375 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 6 357 1.0E-90 T 17-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 VI35_07075 2b31634c23838d00357864385d2645a7 375 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 1 375 1.2E-119 T 17-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 VI35_07075 2b31634c23838d00357864385d2645a7 375 PIRSF PIRSF000267 1 374 2.3E-118 T 17-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 VI35_18365 ea7df62a8962ed9a6122c0d401d99013 475 Gene3D G3DSA:1.10.3430.10 21 475 3.2E-131 T 17-10-2018 IPR029020 Ammonium/urea transporter VI35_18365 ea7df62a8962ed9a6122c0d401d99013 475 TIGRFAM TIGR00836 amt: ammonium transporter 45 473 3.0E-127 T 17-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 VI35_18365 ea7df62a8962ed9a6122c0d401d99013 475 SUPERFAMILY SSF111352 41 454 9.68E-119 T 17-10-2018 VI35_18365 ea7df62a8962ed9a6122c0d401d99013 475 ProSitePatterns PS01219 Ammonium transporters signature. 221 246 - T 17-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 VI35_18365 ea7df62a8962ed9a6122c0d401d99013 475 Pfam PF00909 Ammonium Transporter Family 48 473 6.7E-113 T 17-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 VI35_08665 e6a2a807ebc7770a06d3943b3a2ef363 666 SUPERFAMILY SSF48208 358 557 4.25E-6 T 17-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 VI35_18805 f931a275149677796ee2d53815299984 172 Pfam PF00924 Mechanosensitive ion channel 48 159 2.1E-14 T 17-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 VI35_18805 f931a275149677796ee2d53815299984 172 SUPERFAMILY SSF50182 93 159 5.23E-12 T 17-10-2018 IPR010920 LSM domain superfamily VI35_17910 3e30a75a79361f07bc4d2df8e8388867 274 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 143 155 - T 17-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 VI35_17910 3e30a75a79361f07bc4d2df8e8388867 274 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 11 263 20.28 T 17-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 VI35_17910 3e30a75a79361f07bc4d2df8e8388867 274 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 14 257 3.1E-83 T 17-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 VI35_17910 3e30a75a79361f07bc4d2df8e8388867 274 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 9 263 3.3E-89 T 17-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 VI35_11605 8c0f56ea3b075dcfa61da34b6046e9fd 159 SUPERFAMILY SSF52540 37 115 9.03E-14 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_11605 8c0f56ea3b075dcfa61da34b6046e9fd 159 Gene3D G3DSA:3.40.50.300 31 135 6.0E-18 T 17-10-2018 VI35_01285 c45a23613fe38d6f68dfdd02dcd0536e 123 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 68 121 1.1E-18 T 17-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 VI35_01285 c45a23613fe38d6f68dfdd02dcd0536e 123 Gene3D G3DSA:1.20.5.1030 64 121 4.3E-17 T 17-10-2018 IPR038379 SecE superfamily VI35_01285 c45a23613fe38d6f68dfdd02dcd0536e 123 Hamap MF_00422 Protein translocase subunit SecE [secE]. 65 119 13.104 T 17-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 VI35_01285 c45a23613fe38d6f68dfdd02dcd0536e 123 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 68 120 2.5E-20 T 17-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 VI35_01285 c45a23613fe38d6f68dfdd02dcd0536e 123 PRINTS PR01650 Bacterial translocase SecE signature 42 63 1.0E-30 T 17-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 VI35_01285 c45a23613fe38d6f68dfdd02dcd0536e 123 PRINTS PR01650 Bacterial translocase SecE signature 63 83 1.0E-30 T 17-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 VI35_01285 c45a23613fe38d6f68dfdd02dcd0536e 123 PRINTS PR01650 Bacterial translocase SecE signature 107 123 1.0E-30 T 17-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 VI35_01285 c45a23613fe38d6f68dfdd02dcd0536e 123 PRINTS PR01650 Bacterial translocase SecE signature 87 107 1.0E-30 T 17-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 VI35_01285 c45a23613fe38d6f68dfdd02dcd0536e 123 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 69 97 - T 17-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 VI35_18895 96e9d3d65cb67db04de4fa3c39e7ebde 305 Pfam PF02698 DUF218 domain 64 202 5.8E-21 T 17-10-2018 IPR003848 Domain of unknown function DUF218 VI35_17080 0a4bd5238be524fe68ea9466eb1a00ec 145 SUPERFAMILY SSF102220 72 141 2.09E-5 T 17-10-2018 IPR036654 DNA polymerase III, psi subunit superfamily GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_17080 0a4bd5238be524fe68ea9466eb1a00ec 145 Pfam PF03603 DNA polymerase III psi subunit 10 140 4.3E-4 T 17-10-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VI35_08345 258aeb0ac10372577a42e5029fb708cc 129 Pfam PF15594 Immunity protein 50 8 124 2.4E-14 T 17-10-2018 IPR028957 Immunity protein 50 VI35_00720 9b3b44be4f404a8c03a445d1319c4319 139 Gene3D G3DSA:2.40.128.270 32 134 1.2E-26 T 17-10-2018 IPR038670 HslJ-like superfamily VI35_00720 9b3b44be4f404a8c03a445d1319c4319 139 Pfam PF03724 META domain 26 129 7.7E-24 T 17-10-2018 IPR005184 Domain of unknown function DUF306, Meta/HslJ VI35_03105 6e0b7e50f93cd2a5e5d1f556eac29aca 417 Pfam PF02308 MgtC family 12 135 4.3E-15 T 17-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 VI35_03105 6e0b7e50f93cd2a5e5d1f556eac29aca 417 Pfam PF13194 Domain of unknown function (DUF4010) 184 393 1.3E-64 T 17-10-2018 IPR025105 Domain of unknown function DUF4010 VI35_09715 5cdeb433586be9b041d2811ff1f354b0 139 TIGRFAM TIGR02978 phageshock_pspC: phage shock protein C 14 139 4.2E-46 T 17-10-2018 IPR014320 Phage shock protein, PspC VI35_09715 5cdeb433586be9b041d2811ff1f354b0 139 Pfam PF04024 PspC domain 14 71 2.0E-18 T 17-10-2018 IPR007168 Phage shock protein, PspC, N-terminal VI35_12100 f2d26c0d8a6cc5bd8b8c72839d61ff02 233 Pfam PF11201 Protein of unknown function (DUF2982) 68 225 4.5E-59 T 17-10-2018 IPR021367 Protein of unknown function DUF2982 VI35_12375 4bce00a3a38f8f4c489150c419f40eb5 290 Pfam PF01136 Peptidase family U32 84 195 1.9E-12 T 17-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 VI35_12275 117580fa613e4f699396a6b5131415d9 394 Pfam PF13360 PQQ-like domain 79 319 7.2E-53 T 17-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat VI35_12275 117580fa613e4f699396a6b5131415d9 394 Pfam PF13360 PQQ-like domain 325 391 4.0E-5 T 17-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat VI35_12275 117580fa613e4f699396a6b5131415d9 394 Gene3D G3DSA:2.130.10.10 22 392 9.6E-100 T 17-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 VI35_12275 117580fa613e4f699396a6b5131415d9 394 SUPERFAMILY SSF50998 34 390 7.06E-79 T 17-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily VI35_12275 117580fa613e4f699396a6b5131415d9 394 SMART SM00564 252 283 30.0 T 17-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat VI35_12275 117580fa613e4f699396a6b5131415d9 394 SMART SM00564 290 321 1.7 T 17-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat VI35_12275 117580fa613e4f699396a6b5131415d9 394 SMART SM00564 331 362 0.11 T 17-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat VI35_12275 117580fa613e4f699396a6b5131415d9 394 SMART SM00564 116 147 4.4E-5 T 17-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat VI35_12275 117580fa613e4f699396a6b5131415d9 394 SMART SM00564 66 97 3.4E-4 T 17-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat VI35_12275 117580fa613e4f699396a6b5131415d9 394 SMART SM00564 155 187 0.0019 T 17-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat VI35_12275 117580fa613e4f699396a6b5131415d9 394 TIGRFAM TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL 6 391 1.8E-132 T 17-10-2018 IPR017687 Outer membrane protein assembly factor BamB VI35_12275 117580fa613e4f699396a6b5131415d9 394 Hamap MF_00923 Outer membrane protein assembly factor BamB [bamB]. 3 393 38.15 T 17-10-2018 IPR017687 Outer membrane protein assembly factor BamB VI35_20035 485a210f28cd2138d97cc7726f544762 226 SUPERFAMILY SSF53335 2 179 2.76E-30 T 17-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VI35_20035 485a210f28cd2138d97cc7726f544762 226 Pfam PF01564 Spermine/spermidine synthase domain 68 169 9.6E-5 T 17-10-2018 VI35_20035 485a210f28cd2138d97cc7726f544762 226 Gene3D G3DSA:3.40.50.150 23 223 1.2E-34 T 17-10-2018 VI35_09010 5c5baab7dde2e08f986f71a9e71a0c14 104 Pfam PF09956 Uncharacterized conserved protein (DUF2190) 3 85 1.1E-13 T 17-10-2018 IPR011231 Bacteriophage VT1-Sakai, H0018 VI35_20220 470d625682b3d2c6497b01bc94f3f400 298 Pfam PF00892 EamA-like transporter family 9 142 3.9E-16 T 17-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VI35_20220 470d625682b3d2c6497b01bc94f3f400 298 SUPERFAMILY SSF103481 188 288 2.62E-7 T 17-10-2018 VI35_20220 470d625682b3d2c6497b01bc94f3f400 298 SUPERFAMILY SSF103481 47 143 7.06E-13 T 17-10-2018 VI35_20220 470d625682b3d2c6497b01bc94f3f400 298 TIGRFAM TIGR00688 rarD: protein RarD 8 261 2.1E-87 T 17-10-2018 IPR004626 RarD protein GO:0005887 VI35_08375 54a4baf8cbf25f2c78c2e134cedbfc1d 69 Pfam PF15538 Bacterial toxin 46 6 64 3.5E-11 T 17-10-2018 IPR028238 Bacterial toxin 46 VI35_19620 e9a00f3180779565fefcae4a880fe5b0 199 Pfam PF01914 MarC family integral membrane protein 4 191 6.1E-55 T 17-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 VI35_07760 86aa27909b30248d4a24a020aae03377 325 Pfam PF03837 RecT family 31 214 3.4E-24 T 17-10-2018 IPR018330 RecT family GO:0003677|GO:0006259 VI35_07760 86aa27909b30248d4a24a020aae03377 325 TIGRFAM TIGR01913 bet_lambda: phage recombination protein Bet 38 212 2.8E-27 T 17-10-2018 IPR010183 Bacteriophage lambda, Bet VI35_20520 d5395328dd0837128f273a459a0928f0 114 Pfam PF10973 Protein of unknown function (DUF2799) 30 111 1.4E-17 T 17-10-2018 IPR021242 Protein of unknown function DUF2799 VI35_19010 b242cbf80e3782188d3b7c484cefdd62 172 Pfam PF05706 Cyclin-dependent kinase inhibitor 3 (CDKN3) 39 131 1.9E-7 T 17-10-2018 IPR022778 CDKN3 domain GO:0004721|GO:0004725 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 VI35_19010 b242cbf80e3782188d3b7c484cefdd62 172 Gene3D G3DSA:3.90.190.10 7 167 1.1E-23 T 17-10-2018 IPR029021 Protein-tyrosine phosphatase-like VI35_19010 b242cbf80e3782188d3b7c484cefdd62 172 SUPERFAMILY SSF52799 8 161 9.52E-29 T 17-10-2018 IPR029021 Protein-tyrosine phosphatase-like VI35_19010 b242cbf80e3782188d3b7c484cefdd62 172 ProSitePatterns PS00383 Tyrosine specific protein phosphatases active site. 113 123 - T 17-10-2018 IPR016130 Protein-tyrosine phosphatase, active site GO:0004725|GO:0016311 VI35_14850 5bc1cfeccd6326410300a94df43fb960 66 Pfam PF10725 Protein of unknown function (DUF2517) 2 61 2.2E-34 T 17-10-2018 IPR019663 Uncharacterised protein YbfA VI35_14950 2b7fc7c6e114dba3a2823d676e7df576 244 Gene3D G3DSA:1.10.530.10 98 238 8.5E-44 T 17-10-2018 VI35_14950 2b7fc7c6e114dba3a2823d676e7df576 244 SUPERFAMILY SSF53955 97 237 8.76E-45 T 17-10-2018 IPR023346 Lysozyme-like domain superfamily VI35_14950 2b7fc7c6e114dba3a2823d676e7df576 244 Pfam PF01464 Transglycosylase SLT domain 116 216 2.8E-27 T 17-10-2018 IPR008258 Transglycosylase SLT domain 1 VI35_01330 d3728b126a4c1ef8a4159a92dad8c6e2 126 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 3 125 5.7E-54 T 17-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 VI35_01330 d3728b126a4c1ef8a4159a92dad8c6e2 126 Pfam PF01042 Endoribonuclease L-PSP 9 125 1.8E-43 T 17-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 VI35_01330 d3728b126a4c1ef8a4159a92dad8c6e2 126 Gene3D G3DSA:3.30.1330.40 1 126 1.1E-54 T 17-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 VI35_01330 d3728b126a4c1ef8a4159a92dad8c6e2 126 SUPERFAMILY SSF55298 1 126 9.42E-49 T 17-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 VI35_10720 8daa9449d0a40dfad272c404dbf60bda 476 Gene3D G3DSA:1.10.287.950 147 476 2.3E-66 T 17-10-2018 VI35_10720 8daa9449d0a40dfad272c404dbf60bda 476 SUPERFAMILY SSF58104 166 475 1.31E-68 T 17-10-2018 VI35_10720 8daa9449d0a40dfad272c404dbf60bda 476 SMART SM00283 214 475 2.4E-64 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_10720 8daa9449d0a40dfad272c404dbf60bda 476 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 261 440 1.0E-41 T 17-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VI35_02070 5a080c7b26bcb4fb182f01241e0b43a1 129 PIRSF PIRSF002889 1 129 2.1E-31 T 17-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 VI35_02070 5a080c7b26bcb4fb182f01241e0b43a1 129 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 5 127 1.1E-27 T 17-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 VI35_01455 55412d54f1f2f01fd2761eedf5f0f6a3 373 Gene3D G3DSA:3.75.10.10 32 373 2.4E-110 T 17-10-2018 VI35_01455 55412d54f1f2f01fd2761eedf5f0f6a3 373 Pfam PF04371 Porphyromonas-type peptidyl-arginine deiminase 42 372 3.2E-101 T 17-10-2018 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type GO:0004668|GO:0009446 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 VI35_01455 55412d54f1f2f01fd2761eedf5f0f6a3 373 SUPERFAMILY SSF55909 38 373 1.18E-110 T 17-10-2018 VI35_20880 39bb1ef4f97bcdf2aa1681258f158128 189 Pfam PF01810 LysE type translocator 7 188 9.0E-19 T 17-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VI35_00735 5b7fd33b247c714c5be6fdbc94d0662a 159 Pfam PF05981 CreA protein 31 158 5.5E-55 T 17-10-2018 IPR010292 Uncharacterised protein family CreA VI35_00735 5b7fd33b247c714c5be6fdbc94d0662a 159 PIRSF PIRSF003174 4 159 4.1E-62 T 17-10-2018 IPR010292 Uncharacterised protein family CreA VI35_08915 7269f2b60550685a8efff6b1d6174411 236 Pfam PF09669 Phage regulatory protein Rha (Phage_pRha) 13 91 2.3E-20 T 17-10-2018 IPR014054 Bacteriophage regulatory protein, Rha family VI35_08915 7269f2b60550685a8efff6b1d6174411 236 Pfam PF03374 Phage antirepressor protein KilAC domain 122 225 2.0E-26 T 17-10-2018 IPR005039 Antirepressor protein, C-terminal GO:0003677 VI35_02960 cdfecc3d7c217eccfbf42fcfa40e0e55 133 Pfam PF03788 LrgA family 22 115 1.1E-26 T 17-10-2018 IPR005538 LrgA/CidA family GO:0016021 VI35_14930 07859eca5d7ec9eaba9e90000af38c3b 422 Pfam PF06097 Bacterial protein of unknown function (DUF945) 1 420 2.5E-28 T 17-10-2018 IPR010352 Protein of unknown function DUF945 VI35_10850 d2b1c2cf36ca9c74034c68d65f8cfde1 94 Pfam PF10723 Replication regulatory protein RepB 17 68 1.3E-6 T 17-10-2018 IPR019661 Replication regulatory protein RepA2 GO:0006276 VI35_04140 b8e012f026a33150ef98f11a4c8d0cae 224 Gene3D G3DSA:2.40.360.10 28 223 1.4E-56 T 17-10-2018 IPR023373 YmcC-like superfamily VI35_04140 b8e012f026a33150ef98f11a4c8d0cae 224 Pfam PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF 24 216 6.0E-46 T 17-10-2018 IPR021308 Group 4 capsule polysaccharide formation lipoprotein GfcB VI35_04140 b8e012f026a33150ef98f11a4c8d0cae 224 SUPERFAMILY SSF159270 35 223 6.02E-44 T 17-10-2018 IPR023373 YmcC-like superfamily VI35_10955 4f0d758770e0aa9e7945c008bde526d3 152 Pfam PF13185 GAF domain 38 144 2.6E-11 T 17-10-2018 IPR003018 GAF domain GO:0005515 VI35_10955 4f0d758770e0aa9e7945c008bde526d3 152 ProSitePatterns PS01320 Uncharacterized protein family UPF0067 signature. 91 108 - T 17-10-2018 IPR000614 Free Met sulfoxide reductase conserved site VI35_10955 4f0d758770e0aa9e7945c008bde526d3 152 SUPERFAMILY SSF55781 3 148 1.26E-41 T 17-10-2018 VI35_10955 4f0d758770e0aa9e7945c008bde526d3 152 Gene3D G3DSA:3.30.450.40 2 152 1.0E-66 T 17-10-2018 IPR029016 GAF-like domain superfamily VI35_02605 b9570193da322593aad8eab497162dd9 336 Pfam PF02628 Cytochrome oxidase assembly protein 6 312 1.8E-69 T 17-10-2018 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 Reactome: R-HSA-189451 VI35_14530 67c2a1759cfc3ae13ca11a93d1c4e898 359 Pfam PF04632 Fusaric acid resistance protein family 20 343 1.9E-21 T 17-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 VI35_15440 85c5d1456d132f3a0af8a4d4916fa170 178 SUPERFAMILY SSF55729 6 171 2.2E-40 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_15440 85c5d1456d132f3a0af8a4d4916fa170 178 Gene3D G3DSA:3.40.630.30 4 177 1.0E-38 T 17-10-2018 VI35_15440 85c5d1456d132f3a0af8a4d4916fa170 178 Pfam PF13302 Acetyltransferase (GNAT) domain 8 146 4.6E-28 T 17-10-2018 IPR000182 GNAT domain VI35_17830 609d774fc1ccca5c112f62473213fef4 147 Pfam PF14341 PilX N-terminal 6 42 1.0E-7 T 17-10-2018 IPR025746 Type 4 fimbrial biogenesis protein PilX, N-terminal domain VI35_18075 1b59454788fafff805539b564acc1625 187 Pfam PF07298 NnrU protein 4 185 3.8E-42 T 17-10-2018 IPR009915 NnrU domain VI35_17210 daa2048b7dc98fe6fb28973a5754ba39 128 SUPERFAMILY SSF51316 5 127 2.62E-55 T 17-10-2018 IPR011057 Mss4-like superfamily VI35_17210 daa2048b7dc98fe6fb28973a5754ba39 128 Gene3D G3DSA:2.170.150.20 1 128 1.5E-56 T 17-10-2018 VI35_17210 daa2048b7dc98fe6fb28973a5754ba39 128 Pfam PF01641 SelR domain 8 126 1.5E-50 T 17-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 VI35_17210 daa2048b7dc98fe6fb28973a5754ba39 128 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 5 126 2.6E-49 T 17-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 VI35_19285 148df9236d612499948ff59f12a37bad 355 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 40 105 1.6E-5 T 17-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 VI35_19285 148df9236d612499948ff59f12a37bad 355 SUPERFAMILY SSF51735 1 107 6.16E-13 T 17-10-2018 IPR036291 NAD(P)-binding domain superfamily VI35_19585 281eff49145239c9731476adc4f57d2b 206 Gene3D G3DSA:1.10.357.10 53 205 2.8E-42 T 17-10-2018 VI35_19585 281eff49145239c9731476adc4f57d2b 206 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 58 - T 17-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site VI35_19585 281eff49145239c9731476adc4f57d2b 206 SUPERFAMILY SSF46689 4 77 2.92E-13 T 17-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VI35_19585 281eff49145239c9731476adc4f57d2b 206 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 58 2.1E-9 T 17-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VI35_19585 281eff49145239c9731476adc4f57d2b 206 Gene3D G3DSA:1.10.10.60 2 52 3.0E-22 T 17-10-2018 VI35_09705 1033babd8ba135bdbf148ba76c536838 226 Pfam PF04012 PspA/IM30 family 2 215 1.6E-45 T 17-10-2018 IPR007157 PspA/IM30 VI35_09705 1033babd8ba135bdbf148ba76c536838 226 TIGRFAM TIGR02977 phageshock_pspA: phage shock protein A 1 216 4.4E-86 T 17-10-2018 IPR014319 Phage shock protein, PspA VI35_18390 9560745c59422aad416d6fd16edfee91 368 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 2 343 1.8E-114 T 17-10-2018 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 VI35_18390 9560745c59422aad416d6fd16edfee91 368 Pfam PF03739 Predicted permease YjgP/YjgQ family 5 343 8.1E-75 T 17-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 VI35_17485 037419acdbfd865beca2c6fa70ded4b4 91 Gene3D G3DSA:1.20.58.1000 1 91 4.7E-29 T 17-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily VI35_17485 037419acdbfd865beca2c6fa70ded4b4 91 Pfam PF02583 Metal-sensitive transcriptional repressor 7 85 6.9E-22 T 17-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 VI35_18240 7b7343e109548728552a2c0942407583 318 SUPERFAMILY SSF52540 65 288 4.6E-11 T 17-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VI35_18240 7b7343e109548728552a2c0942407583 318 Gene3D G3DSA:3.40.50.300 65 296 1.7E-8 T 17-10-2018 VI35_17535 cf4561324c5ab87407bc14443d3cb0b4 107 Pfam PF08850 Domain of unknown function (DUF1820) 7 99 4.1E-39 T 17-10-2018 IPR014949 Protein of unknown function DUF1820 VI35_00500 c8b26b5ae65c03cb744251cc860ef7bb 301 Pfam PF04471 Restriction endonuclease 156 275 3.4E-35 T 17-10-2018 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 VI35_00500 c8b26b5ae65c03cb744251cc860ef7bb 301 SUPERFAMILY SSF52980 159 278 6.97E-13 T 17-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 VI35_00500 c8b26b5ae65c03cb744251cc860ef7bb 301 Gene3D G3DSA:3.40.91.100 118 295 1.7E-10 T 17-10-2018 VI35_00500 c8b26b5ae65c03cb744251cc860ef7bb 301 Pfam PF14338 Mrr N-terminal domain 1 81 7.4E-27 T 17-10-2018 IPR025745 Restriction system protein Mrr-like N-terminal domain VI35_17825 04a80e797e55cdb4e3a6d2c227c4c513 945 Pfam PF05567 Neisseria PilC beta-propeller domain 432 727 2.2E-17 T 17-10-2018 IPR008707 PilC beta-propeller domain VI35_09445 150f3592fd5c7a6b3ebaefb0548fb5ad 114 SUPERFAMILY SSF81343 5 114 3.66E-28 T 17-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_09445 150f3592fd5c7a6b3ebaefb0548fb5ad 114 Gene3D G3DSA:1.20.1300.10 1 114 8.3E-30 T 17-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_09445 150f3592fd5c7a6b3ebaefb0548fb5ad 114 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 10 112 4.9E-34 T 17-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 VI35_09445 150f3592fd5c7a6b3ebaefb0548fb5ad 114 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 11 103 9.8E-7 T 17-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VI35_09445 150f3592fd5c7a6b3ebaefb0548fb5ad 114 PIRSF PIRSF000169 1 114 1.1E-38 T 17-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 VI35_20990 4ec940d15560f7ef67bb8a827c2d2327 546 SUPERFAMILY SSF56112 94 436 2.61E-46 T 17-10-2018 IPR011009 Protein kinase-like domain superfamily VI35_20990 4ec940d15560f7ef67bb8a827c2d2327 546 Pfam PF03109 ABC1 family 112 230 2.2E-35 T 17-10-2018 IPR004147 UbiB domain VI35_20990 4ec940d15560f7ef67bb8a827c2d2327 546 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 6 445 3.0E-182 T 17-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 VI35_20990 4ec940d15560f7ef67bb8a827c2d2327 546 Hamap MF_00414 Probable protein kinase UbiB [ubiB]. 3 540 57.854 T 17-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 VI35_05255 e89b85749b09673d4ce8a678d5ce797e 221 Pfam PF12261 Thermostable hemolysin 17 189 1.7E-56 T 17-10-2018 IPR022050 Thermostable hemolysin VI35_05255 e89b85749b09673d4ce8a678d5ce797e 221 SUPERFAMILY SSF55729 6 155 1.32E-5 T 17-10-2018 IPR016181 Acyl-CoA N-acyltransferase VI35_18190 d08ecc3a8adeb391bd2f43a0f5898567 166 Pfam PF06048 Domain of unknown function (DUF927) 14 138 7.1E-16 T 17-10-2018 IPR009270 Domain of unknown function DUF927 VI35_12885 8cd36743a90c6ec88e1eac083e1c4172 213 Pfam PF11726 Inovirus Gp2 64 206 1.0E-16 T 17-10-2018 VI35_15145 c13ec3e1215024ace8f6de03fa866142 99 Pfam PF11006 Protein of unknown function (DUF2845) 18 94 1.0E-20 T 17-10-2018 IPR021268 Protein of unknown function DUF2845 VI35_00825 7eafa70cccaf7a5632876778981b5853 95 Pfam PF12305 Protein of unknown function (DUF3630) 3 92 3.0E-31 T 17-10-2018 IPR022080 Protein of unknown function DUF3630 VI35_03470 2bc3de706980855e2a0a7beb69140ca9 72 Pfam PF03889 Domain of unknown function 20 56 5.2E-23 T 17-10-2018 IPR005589 Alternative ribosome-rescue factor A GO:0072344 VI35_01955 53b380673de98f92878c0d239dc432a8 192 SMART SM00749 51 114 0.91 T 17-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria VI35_01955 53b380673de98f92878c0d239dc432a8 192 SMART SM00749 129 192 3.3E-5 T 17-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria VI35_01955 53b380673de98f92878c0d239dc432a8 192 Pfam PF04972 BON domain 46 114 6.8E-13 T 17-10-2018 IPR007055 BON domain VI35_01955 53b380673de98f92878c0d239dc432a8 192 Pfam PF04972 BON domain 124 190 3.1E-18 T 17-10-2018 IPR007055 BON domain VI35_01655 1880169c9458852a38bd9da0b620dc9a 89 Pfam PF11656 YjbD family (DUF3811) 1 89 2.3E-24 T 17-10-2018 IPR020317 Uncharacterised protein family YjbD VI35_17165 a11804f35b0ce147c98dba037d1db6c9 207 SUPERFAMILY SSF46785 6 184 2.08E-31 T 17-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VI35_17165 a11804f35b0ce147c98dba037d1db6c9 207 Gene3D G3DSA:1.10.10.10 2 76 2.7E-9 T 17-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VI35_17165 a11804f35b0ce147c98dba037d1db6c9 207 Pfam PF08279 HTH domain 7 45 7.3E-5 T 17-10-2018 IPR013196 Helix-turn-helix, type 11 VI35_20815 1b1aaa52b751eb851113a883f11ad226 27 TIGRFAM TIGR02616 tnaC_leader: tryptophanase leader peptide 5 26 5.2E-9 T 17-10-2018 IPR012620 Tryptophanese operon leader peptide GO:0031554|GO:0031556 VI35_11710 2915ecf126d6aaab06717ff5734069d9 153 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 8 142 2.3E-16 T 17-10-2018 IPR009936 Protein of unknown function DUF1468 VI35_05590 71070c36738bbf065e6810d6fd2a769b 127 PIRSF PIRSF005610 1 122 6.5E-8 T 17-10-2018 IPR007360 Invasion gene expression up-regulator, SirB VI35_05590 71070c36738bbf065e6810d6fd2a769b 127 Pfam PF04247 Invasion gene expression up-regulator, SirB 2 123 6.3E-28 T 17-10-2018 IPR007360 Invasion gene expression up-regulator, SirB VI35_01180 a96abe829f211e5943d241cb0c4993cc 157 Pfam PF06496 Protein of unknown function (DUF1097) 8 140 8.2E-36 T 17-10-2018 IPR009476 Protein of unknown function DUF1097 VI35_08335 063e46c539fa8ff67ae67bde167456c3 242 Pfam PF13503 Domain of unknown function (DUF4123) 19 133 1.9E-19 T 17-10-2018 IPR025391 Domain of unknown function DUF4123 VI35_20165 4bdbc353c0c2bbdcd3a7c556ab033ed1 443 Pfam PF02646 RmuC family 129 425 2.9E-104 T 17-10-2018 IPR003798 DNA recombination RmuC VI35_12450 a641f59a2298a59cfb9f66a2a0931ad0 132 Gene3D G3DSA:3.10.180.10 6 122 1.3E-11 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_12450 a641f59a2298a59cfb9f66a2a0931ad0 132 SUPERFAMILY SSF54593 7 117 1.28E-13 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_19375 9934af56ccf7450627a0a5a69e0ea40a 268 SUPERFAMILY SSF56317 1 264 1.28E-78 T 17-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily VI35_19375 9934af56ccf7450627a0a5a69e0ea40a 268 Gene3D G3DSA:3.60.110.10 1 267 9.6E-89 T 17-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily VI35_19375 9934af56ccf7450627a0a5a69e0ea40a 268 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 150 170 - T 17-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site VI35_19375 9934af56ccf7450627a0a5a69e0ea40a 268 Pfam PF00795 Carbon-nitrogen hydrolase 35 256 4.2E-53 T 17-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 VI35_07165 05f82edea234ecd1fbc080c8341314ae 133 Pfam PF04219 Protein of unknown function, DUF 23 109 1.1E-31 T 17-10-2018 IPR007335 Protein of unknown function DUF413 VI35_09725 4903e2ad21151daeab0077e639a6a296 347 TIGRFAM TIGR01620 hyp_HI0043: TIGR01620 family protein 86 340 5.3E-76 T 17-10-2018 IPR006507 Uncharacterised protein family UPF0283 VI35_09725 4903e2ad21151daeab0077e639a6a296 347 Pfam PF05128 Domain of unknown function (DUF697) 182 340 3.3E-55 T 17-10-2018 IPR021147 Protein of unknown function DUF697 VI35_08855 13b437868c4ded3455bd43964cae63ea 107 SUPERFAMILY SSF52309 8 91 6.41E-23 T 17-10-2018 VI35_08855 13b437868c4ded3455bd43964cae63ea 107 Pfam PF14359 Domain of unknown function (DUF4406) 10 90 1.6E-24 T 17-10-2018 IPR025518 Protein of unknown function DUF4406 VI35_03280 3137a6ddf36e6f86624b4dc8c3d10738 153 PIRSF PIRSF004923 1 153 8.3E-49 T 17-10-2018 IPR026268 Protein RseC VI35_03280 3137a6ddf36e6f86624b4dc8c3d10738 153 Pfam PF04246 Positive regulator of sigma(E), RseC/MucC 8 142 2.2E-35 T 17-10-2018 VI35_18700 5457f73c117145dd8424155af0cccdcb 83 Pfam PF07869 Protein of unknown function (DUF1656) 24 74 7.7E-13 T 17-10-2018 IPR012451 Protein of unknown function DUF1656 VI35_08795 0d80877e91c48253bdeb321128a3fcec 371 PIRSF PIRSF016907 1 369 1.2E-125 T 17-10-2018 IPR011386 Putative ATP-NAD kinase VI35_08795 0d80877e91c48253bdeb321128a3fcec 371 Pfam PF01513 ATP-NAD kinase 4 365 9.8E-40 T 17-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 VI35_03975 8dbf3c6f765259f6beda9c111cd73adf 368 SUPERFAMILY SSF69593 88 315 6.41E-8 T 17-10-2018 VI35_03975 8dbf3c6f765259f6beda9c111cd73adf 368 Pfam PF01553 Acyltransferase 91 193 5.9E-9 T 17-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VI35_21100 44d46d1bf2198670001a308adc70b3f0 463 PIRSF PIRSF004548 1 456 1.2E-165 T 17-10-2018 IPR010364 Uncharacterised protein family, inner membrane CreD VI35_21100 44d46d1bf2198670001a308adc70b3f0 463 Pfam PF06123 Inner membrane protein CreD 7 437 2.9E-144 T 17-10-2018 IPR010364 Uncharacterised protein family, inner membrane CreD VI35_20825 2e4ca94e03bdc448b91c0ed6ce4f706f 113 Pfam PF09313 Domain of unknown function (DUF1971) 14 94 2.6E-24 T 17-10-2018 IPR015392 Domain of unknown function DUF1971 VI35_20825 2e4ca94e03bdc448b91c0ed6ce4f706f 113 Gene3D G3DSA:2.60.120.10 2 113 1.0E-41 T 17-10-2018 IPR014710 RmlC-like jelly roll fold VI35_20825 2e4ca94e03bdc448b91c0ed6ce4f706f 113 PIRSF PIRSF020632 3 112 1.4E-53 T 17-10-2018 IPR014510 Tellurite resistance predicted, YeaR VI35_20825 2e4ca94e03bdc448b91c0ed6ce4f706f 113 SUPERFAMILY SSF51197 3 100 7.69E-31 T 17-10-2018 VI35_09390 94184a3c6824c26cb0aadf99b94a646a 167 Gene3D G3DSA:3.30.2010.10 70 161 1.0E-6 T 17-10-2018 VI35_09390 94184a3c6824c26cb0aadf99b94a646a 167 Pfam PF01863 Protein of unknown function DUF45 92 153 3.5E-13 T 17-10-2018 IPR002725 Protein of unknown function DUF45 VI35_12005 de5e19d385b678af5d4aa4d5d340cc10 76 Pfam PF12843 Putative quorum-sensing-regulated virulence factor 9 70 1.7E-27 T 17-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor VI35_12005 de5e19d385b678af5d4aa4d5d340cc10 76 ProDom PD056452 UNCHARACTERIZED BACTERIA SIMILAR YPEB CYTOPLASMIC VCA0163 PRODUCT STM2426 GENE YPO2988 17 72 8.0E-17 T 17-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor VI35_14280 eaeefd365854cd0f8a891c6377fedd86 61 Pfam PF11127 Protein of unknown function (DUF2892) 2 56 1.1E-12 T 17-10-2018 IPR021309 Protein of unknown function DUF2892 VI35_13680 56b501c19781aa4049e30878b5c48e01 137 SUPERFAMILY SSF140566 2 109 5.49E-17 T 17-10-2018 IPR036679 FlgN-like superfamily GO:0005515|GO:0044780 VI35_13680 56b501c19781aa4049e30878b5c48e01 137 Pfam PF05130 FlgN protein 2 127 5.3E-18 T 17-10-2018 IPR007809 FlgN-like protein GO:0005515|GO:0044780 VI35_10650 d70259eafdb89a417906b0125680c5b3 440 Pfam PF07670 Nucleoside recognition 127 225 1.0E-6 T 17-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 VI35_16990 6af9beeff118eef68e10c10e533bb50c 131 SUPERFAMILY SSF52091 10 124 1.06E-7 T 17-10-2018 IPR036513 STAS domain superfamily VI35_04535 402e71715029ede8328a11eccd391362 112 Pfam PF11333 Protein of unknown function (DUF3135) 2 81 8.4E-27 T 17-10-2018 IPR021482 Protein of unknown function DUF3135 VI35_08925 bdb7a1996e9a60024e41a9cd63ccb7e0 324 Pfam PF06147 Protein of unknown function (DUF968) 133 316 1.4E-41 T 17-10-2018 IPR010373 Protein of unknown function DUF968 VI35_16085 58bd240eddf1558ae1d4855117010630 295 Pfam PF01963 TraB family 26 285 1.6E-60 T 17-10-2018 IPR002816 Pheromone shutdown, TraB VI35_12175 95bb35bde6fa487b3baf490dc52422db 252 Pfam PF01618 MotA/TolQ/ExbB proton channel family 98 216 3.4E-24 T 17-10-2018 IPR002898 MotA/TolQ/ExbB proton channel VI35_13245 94e44e4592b3cd5e4333e66cabbfc35f 402 Pfam PF13289 SIR2-like domain 121 329 1.4E-9 T 17-10-2018 IPR039444 SIR2-like domain VI35_11350 48d6ed6a754dce0d863adbfcfe0f5564 261 Pfam PF02698 DUF218 domain 86 249 3.0E-24 T 17-10-2018 IPR003848 Domain of unknown function DUF218 VI35_15330 d9614b1d626fb752b65fe1fe70aeb400 254 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 17 233 2.6E-43 T 17-10-2018 VI35_15330 d9614b1d626fb752b65fe1fe70aeb400 254 Hamap MF_00468 Sulfate transporter CysZ [cysZ]. 11 251 28.624 T 17-10-2018 IPR022985 Sulfate transporter CysZ GO:0000103|GO:0005887|GO:0015116 VI35_13265 f3511a4b50b2538d9e35dc2b82c13ce4 228 Pfam PF14091 Domain of unknown function (DUF4269) 51 194 3.6E-34 T 17-10-2018 IPR025365 Protein of unknown function DUF4269 VI35_00820 95cff67e32ae1a7b1c94781217526110 475 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 17 445 1.1E-133 T 17-10-2018 IPR003846 Uncharacterised protein family UPF0061 VI35_00820 95cff67e32ae1a7b1c94781217526110 475 Hamap MF_00692 UPF0061 protein YdiU [ydiU]. 1 461 41.436 T 17-10-2018 IPR003846 Uncharacterised protein family UPF0061 VI35_07650 3893f0544a8760854485fe7dd0612cc9 224 Pfam PF01914 MarC family integral membrane protein 19 220 4.7E-63 T 17-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 VI35_07650 3893f0544a8760854485fe7dd0612cc9 224 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 18 216 2.5E-65 T 17-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 VI35_15600 fbef072397b5bc5f6cccedf814f54b95 342 Pfam PF12069 Protein of unknown function (DUF3549) 3 339 1.9E-119 T 17-10-2018 IPR021936 Protein of unknown function DUF3549 VI35_09230 e4600e8b0cce5c77c13af7b8706e3ca4 139 Gene3D G3DSA:2.60.40.10 22 102 4.7E-5 T 17-10-2018 IPR013783 Immunoglobulin-like fold VI35_02485 b744164406a03a7e569457bd7a1e0524 497 SUPERFAMILY SSF53254 36 494 1.24E-38 T 17-10-2018 IPR029033 Histidine phosphatase superfamily VI35_02485 b744164406a03a7e569457bd7a1e0524 497 Gene3D G3DSA:3.40.50.1240 33 497 2.0E-75 T 17-10-2018 IPR029033 Histidine phosphatase superfamily VI35_02485 b744164406a03a7e569457bd7a1e0524 497 Pfam PF00328 Histidine phosphatase superfamily (branch 2) 66 193 5.9E-7 T 17-10-2018 IPR000560 Histidine phosphatase superfamily, clade-2 VI35_07070 65e37cc83cfcae97fba08d989d2a4a08 523 PIRSF PIRSF006446 356 520 4.7E-34 T 17-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 VI35_07070 65e37cc83cfcae97fba08d989d2a4a08 523 PIRSF PIRSF006446 3 336 3.0E-110 T 17-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 VI35_07070 65e37cc83cfcae97fba08d989d2a4a08 523 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 10 504 4.2E-170 T 17-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 VI35_19070 3cf1752630125ec77fa0d2aedc2b29e0 216 Pfam PF04340 Protein of unknown function, DUF484 1 210 3.4E-45 T 17-10-2018 IPR007435 Protein of unknown function DUF484 VI35_19070 3cf1752630125ec77fa0d2aedc2b29e0 216 Gene3D G3DSA:3.30.450.40 36 214 1.5E-35 T 17-10-2018 IPR029016 GAF-like domain superfamily VI35_07145 6b26aa55970e616e3be3d1ae3b2dfb71 359 Gene3D G3DSA:3.20.20.190 27 355 1.1E-123 T 17-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 VI35_07145 6b26aa55970e616e3be3d1ae3b2dfb71 359 SUPERFAMILY SSF51695 29 354 1.91E-92 T 17-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 VI35_07145 6b26aa55970e616e3be3d1ae3b2dfb71 359 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 33 349 2.4E-66 T 17-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 VI35_20820 4451918be247581c91dd507f7e46142a 405 SUPERFAMILY SSF54862 155 348 7.85E-18 T 17-10-2018 VI35_20820 4451918be247581c91dd507f7e46142a 405 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 331 342 - T 17-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VI35_20820 4451918be247581c91dd507f7e46142a 405 Pfam PF12801 4Fe-4S binding domain 149 186 5.1E-10 T 17-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VI35_20820 4451918be247581c91dd507f7e46142a 405 Pfam PF12801 4Fe-4S binding domain 252 286 2.9E-4 T 17-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VI35_20025 c847bbfaf4f4fc8811c88c7b4ea06bac 686 Pfam PF13502 AsmA-like C-terminal region 438 625 2.0E-9 T 17-10-2018 IPR032712 AsmA-like, C-terminal VI35_13075 91dc3d93a4b55425319572839941ce63 216 Pfam PF09335 SNARE associated Golgi protein 44 169 3.0E-17 T 17-10-2018 IPR032816 SNARE associated Golgi protein VI35_08630 8cf95233bbed6271d4b98b6220703e85 130 Gene3D G3DSA:1.20.120.550 2 129 2.1E-21 T 17-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily VI35_08630 8cf95233bbed6271d4b98b6220703e85 130 SUPERFAMILY SSF161084 2 125 1.83E-25 T 17-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily VI35_08630 8cf95233bbed6271d4b98b6220703e85 130 Pfam PF01124 MAPEG family 5 123 6.5E-26 T 17-10-2018 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein VI35_08820 05bbda2b9c256cee2acf6e90321f234d 119 Pfam PF03788 LrgA family 21 112 1.4E-21 T 17-10-2018 IPR005538 LrgA/CidA family GO:0016021 VI35_20475 9ca5c09780450ceb3dba2088d127a8b6 456 Pfam PF01554 MatE 250 399 3.8E-15 T 17-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VI35_20475 9ca5c09780450ceb3dba2088d127a8b6 456 Pfam PF01554 MatE 22 182 2.1E-24 T 17-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VI35_20475 9ca5c09780450ceb3dba2088d127a8b6 456 TIGRFAM TIGR00797 matE: MATE efflux family protein 22 419 7.6E-75 T 17-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VI35_09385 66be566f02b0294dece6f244649435f6 249 Pfam PF11150 Protein of unknown function (DUF2927) 19 219 3.2E-64 T 17-10-2018 IPR021323 Protein of unknown function DUF2927 VI35_16390 860beb2eaa624cf60b7c330c5e39743f 183 Gene3D G3DSA:3.40.50.850 2 158 5.9E-44 T 17-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 VI35_16390 860beb2eaa624cf60b7c330c5e39743f 183 SUPERFAMILY SSF52499 3 159 2.09E-43 T 17-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 VI35_16390 860beb2eaa624cf60b7c330c5e39743f 183 Pfam PF00857 Isochorismatase family 3 139 1.0E-32 T 17-10-2018 IPR000868 Isochorismatase-like GO:0003824 VI35_08220 e9a8dcd861ebf3c3204a4b61de6814c6 474 Pfam PF03600 Citrate transporter 44 419 6.6E-48 T 17-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 VI35_09040 951e9c6d961920c612449365f77af9c4 139 Pfam PF06894 Bacteriophage lambda tail assembly chaperone, TAC, protein G 18 127 6.6E-4 T 17-10-2018 IPR010027 Bacteriophage lambda, GpG, minor tail VI35_17715 b8a90f65be89c2a495931e01f26a57f3 133 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 4 109 2.1E-8 T 17-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VI35_17715 b8a90f65be89c2a495931e01f26a57f3 133 SUPERFAMILY SSF54593 1 125 2.28E-27 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_17715 b8a90f65be89c2a495931e01f26a57f3 133 Gene3D G3DSA:3.10.180.10 1 133 4.0E-36 T 17-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VI35_09710 a0c890a40cb78cbcfad1e867547e7b13 78 TIGRFAM TIGR02976 phageshock_pspB: phage shock protein B 7 77 1.3E-25 T 17-10-2018 IPR009554 Phage shock protein B GO:0006355|GO:0009271 VI35_09710 a0c890a40cb78cbcfad1e867547e7b13 78 Pfam PF06667 Phage shock protein B 7 76 2.1E-29 T 17-10-2018 IPR009554 Phage shock protein B GO:0006355|GO:0009271 VI35_04545 2a359043adb4b71987ccfb1f65a25ec6 155 Pfam PF12821 Threonine/Serine exporter, ThrE 12 146 1.1E-37 T 17-10-2018 IPR024528 Threonine/Serine exporter, ThrE VI35_17755 dac18388683a0bc0cdaa21b72282a16d 407 PRINTS PR00447 Natural resistance-associated macrophage protein signature 297 316 2.0E-28 T 17-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 VI35_17755 dac18388683a0bc0cdaa21b72282a16d 407 PRINTS PR00447 Natural resistance-associated macrophage protein signature 147 168 2.0E-28 T 17-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 VI35_17755 dac18388683a0bc0cdaa21b72282a16d 407 PRINTS PR00447 Natural resistance-associated macrophage protein signature 197 220 2.0E-28 T 17-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 VI35_17755 dac18388683a0bc0cdaa21b72282a16d 407 PRINTS PR00447 Natural resistance-associated macrophage protein signature 94 120 2.0E-28 T 17-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 VI35_17755 dac18388683a0bc0cdaa21b72282a16d 407 PRINTS PR00447 Natural resistance-associated macrophage protein signature 122 141 2.0E-28 T 17-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 VI35_17755 dac18388683a0bc0cdaa21b72282a16d 407 Pfam PF01566 Natural resistance-associated macrophage protein 35 381 4.3E-124 T 17-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 VI35_17755 dac18388683a0bc0cdaa21b72282a16d 407 Hamap MF_00221 Divalent metal cation transporter MntH [mntH]. 5 407 36.334 T 17-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 VI35_17755 dac18388683a0bc0cdaa21b72282a16d 407 TIGRFAM TIGR01197 nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 16 375 2.0E-97 T 17-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 VI35_03885 c86f784ebeb38442536d5191202bcb05 167 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 17 107 1.7E-27 T 17-10-2018 IPR010221 VCBS repeat VI35_02780 85ae1d57cba9d8ff8e19cc9d84be0bc1 421 Pfam PF01384 Phosphate transporter family 26 409 1.5E-112 T 17-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 VI35_19515 5bcd3293a59971ceef2af294c17194fa 365 Pfam PF01699 Sodium/calcium exchanger protein 222 361 2.0E-8 T 17-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 VI35_19515 5bcd3293a59971ceef2af294c17194fa 365 Pfam PF01699 Sodium/calcium exchanger protein 43 192 8.6E-18 T 17-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 VI35_20375 1cc11c4af5bf663cd9414264f882e1cb 151 Pfam PF04074 Domain of unknown function (DUF386) 4 141 1.8E-23 T 17-10-2018 IPR004375 YhcH/YjgK/YiaL family VI35_20375 1cc11c4af5bf663cd9414264f882e1cb 151 SUPERFAMILY SSF51197 1 144 2.2E-23 T 17-10-2018 VI35_20375 1cc11c4af5bf663cd9414264f882e1cb 151 Gene3D G3DSA:2.60.120.370 1 144 4.1E-14 T 17-10-2018 IPR037012 YhcH/YjgK/YiaL superfamily VI35_06320 c754dde44dd81088c311b34709310e1e 458 TIGRFAM TIGR00771 DcuC: transporter, anaerobic C4-dicarboxylate uptake C (DcuC) family 54 447 3.9E-107 T 17-10-2018 IPR004669 C4-dicarboxylate anaerobic carrier GO:0015556|GO:0015740|GO:0016021 VI35_06320 c754dde44dd81088c311b34709310e1e 458 Pfam PF03606 C4-dicarboxylate anaerobic carrier 1 452 6.0E-84 T 17-10-2018 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 VI35_15075 3c97f57ebbdad337f9737de913f04d74 82 Gene3D G3DSA:1.10.1900.30 9 77 5.3E-32 T 17-10-2018 IPR038191 YciN superfamily VI35_15075 3c97f57ebbdad337f9737de913f04d74 82 Pfam PF10692 Protein of unknown function (DUF2498) 4 81 9.3E-40 T 17-10-2018 IPR019633 Protein of unknown function DUF2498 VI35_20560 641223549774104b08f039a047d54385 243 Pfam PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) 2 175 4.6E-37 T 17-10-2018 IPR002654 Glycosyl transferase, family 25 VI35_08965 07193e696235aa726e9733b79397f94f 121 Gene3D G3DSA:1.20.5.780 14 99 2.1E-20 T 17-10-2018 VI35_08965 07193e696235aa726e9733b79397f94f 121 SUPERFAMILY SSF47598 17 94 7.0E-17 T 17-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 VI35_08965 07193e696235aa726e9733b79397f94f 121 Pfam PF08681 Protein of unknown function (DUF1778) 20 96 4.2E-19 T 17-10-2018 IPR014795 Vibrio phage ICP1, Orf50 VI35_11435 f57731053d56f82d8f5e9637f19b93a6 259 Pfam PF01925 Sulfite exporter TauE/SafE 11 246 4.5E-44 T 17-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 VI35_19115 de2314817b6e2977b89e0b71daaace50 358 Pfam PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase 32 353 4.0E-99 T 17-10-2018 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX VI35_16020 c0d1e49dff0f1dc0bbc353075f0567de 51 Pfam PF08085 Entericidin EcnA/B family 20 40 4.2E-8 T 17-10-2018 IPR012556 Entericidin A/B GO:0009636|GO:0016020 VI35_15820 cd8ec8cc49f9ae8068d8507efee13c7c 285 Pfam PF13503 Domain of unknown function (DUF4123) 14 121 2.8E-14 T 17-10-2018 IPR025391 Domain of unknown function DUF4123 VI35_07010 492b014a1f1e28daba97a60b75707015 67 Pfam PF13127 Protein of unknown function (DUF3955) 3 59 4.7E-20 T 17-10-2018 IPR025016 Protein of unknown function DUF3955 VI35_03905 e5ff75c6da246e41a3159512cce63d84 130 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 2 70 1.6E-22 T 17-10-2018 IPR010221 VCBS repeat VI35_14885 9f570b97e828fd4eb85fbf83b897365f 330 Pfam PF04338 Protein of unknown function, DUF481 109 303 1.2E-15 T 17-10-2018 IPR007433 Protein of unknown function DUF481 VI35_08225 d122f0500f1d416a981a9134f39e721b 188 SUPERFAMILY SSF50475 10 128 9.82E-10 T 17-10-2018 VI35_08225 d122f0500f1d416a981a9134f39e721b 188 Gene3D G3DSA:2.30.110.10 4 128 5.5E-18 T 17-10-2018 IPR012349 FMN-binding split barrel GO:0048037 VI35_08225 d122f0500f1d416a981a9134f39e721b 188 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 9 98 2.3E-8 T 17-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 VI35_09720 cb1119d2044929281d763c940f7f1a82 468 Pfam PF04317 YcjX-like family, DUF463 29 467 1.1E-174 T 17-10-2018 IPR007413 Protein of unknown function DUF463, YcjX-like protein VI35_09720 cb1119d2044929281d763c940f7f1a82 468 PIRSF PIRSF019381 3 468 3.7E-182 T 17-10-2018 IPR007413 Protein of unknown function DUF463, YcjX-like protein VI35_15890 a25d3b8c6b8c4bdaa835b10bed72f03f 72 Pfam PF09493 Tryptophan-rich protein (DUF2389) 12 71 4.0E-15 T 17-10-2018 IPR012663 Conserved hypothetical protein CHP02450, tryptophan-rich VI35_09600 114169da69489e8ad853429e6c900ed2 156 Pfam PF05433 Glycine zipper 2TM domain 61 95 3.6E-10 T 17-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 VI35_07275 d46fcded41d0366985a2cff33c26445c 124 Pfam PF09842 Predicted membrane protein (DUF2069) 9 111 1.7E-35 T 17-10-2018 IPR018643 Protein of unknown function DUF2069, membrane VI35_07765 68b5decadd5c8543589e1d5cb705785c 281 Pfam PF12684 PDDEXK-like domain of unknown function (DUF3799) 31 264 1.1E-26 T 17-10-2018 IPR024432 Putative exodeoxyribonuclease 8, PDDEXK-like domain VI35_07750 91ca3fc1a86ff1231dd3a593b186bfc5 192 TIGRFAM TIGR01712 phage_N6A_met: phage N-6-adenine-methyltransferase 5 177 1.3E-35 T 17-10-2018 IPR008593 DNA N-6-adenine-methyltransferase GO:0003677|GO:0009007|GO:0032775 VI35_07750 91ca3fc1a86ff1231dd3a593b186bfc5 192 Pfam PF05869 DNA N-6-adenine-methyltransferase (Dam) 7 185 5.8E-41 T 17-10-2018 IPR008593 DNA N-6-adenine-methyltransferase GO:0003677|GO:0009007|GO:0032775 VI35_02290 bd88515a0debc4c939431daa65de1d22 394 SUPERFAMILY SSF48452 43 140 6.48E-14 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_02290 bd88515a0debc4c939431daa65de1d22 394 Gene3D G3DSA:1.25.40.10 10 167 1.4E-14 T 17-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VI35_02290 bd88515a0debc4c939431daa65de1d22 394 Pfam PF14559 Tetratricopeptide repeat 51 111 1.5E-8 T 17-10-2018 VI35_08815 14fe3e2cfce00b11140a0a7b0d7f6422 228 Pfam PF04172 LrgB-like family 10 222 1.9E-73 T 17-10-2018 IPR007300 CidB/LrgB family VI35_17675 02137afd18f0c064cd56177e4ef1436e 159 Pfam PF04186 FxsA cytoplasmic membrane protein 7 110 1.1E-31 T 17-10-2018 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 VI35_10055 a6fc9b17e84ad46b3d825286eb3724b2 262 Pfam PF01925 Sulfite exporter TauE/SafE 7 257 1.4E-51 T 17-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 VI35_19575 5f4ad32b640b6b5d9f6e5148d0ec546b 104 Pfam PF06611 Protein of unknown function (DUF1145) 5 60 7.3E-14 T 17-10-2018 IPR009525 Protein of unknown function DUF1145 VI35_02725 0033c637b4972562b8bb79ed14b0a8b8 548 Pfam PF02470 MlaD protein 289 392 3.9E-12 T 17-10-2018 IPR003399 Mce/MlaD VI35_02725 0033c637b4972562b8bb79ed14b0a8b8 548 Pfam PF02470 MlaD protein 44 135 1.2E-7 T 17-10-2018 IPR003399 Mce/MlaD VI35_02725 0033c637b4972562b8bb79ed14b0a8b8 548 Pfam PF02470 MlaD protein 161 220 5.9E-6 T 17-10-2018 IPR003399 Mce/MlaD VI35_03790 d0ed7423af56867deb65cd9810ec3dda 378 Pfam PF12698 ABC-2 family transporter protein 20 357 1.2E-35 T 17-10-2018 VI35_02910 c7fba57a26aaab8a57a86a1d70f2ae96 222 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 71 187 3.5E-13 T 17-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VI35_02910 c7fba57a26aaab8a57a86a1d70f2ae96 222 SUPERFAMILY SSF56784 6 217 9.74E-43 T 17-10-2018 IPR036412 HAD-like superfamily VI35_02910 c7fba57a26aaab8a57a86a1d70f2ae96 222 Pfam PF00702 haloacid dehalogenase-like hydrolase 10 185 8.2E-11 T 17-10-2018 VI35_02910 c7fba57a26aaab8a57a86a1d70f2ae96 222 Gene3D G3DSA:3.40.50.1000 9 198 4.8E-25 T 17-10-2018 IPR023214 HAD superfamily VI35_10865 059e9b9565ba5a75bc75b54903f1a581 202 Pfam PF04403 Paraquat-inducible protein A 45 199 1.7E-45 T 17-10-2018 IPR007498 Intermembrane transport protein PqiA-like VI35_07720 ce4a65e42bea092b9fd0c97444c9b275 68 Gene3D G3DSA:1.10.1660.60 1 67 2.9E-5 T 17-10-2018 IPR038146 Bacteriophage 933W-like, putative excisionase superfamily VI35_14130 a645a1a853fc573e55d96c86bd7196c7 109 TIGRFAM TIGR02847 CyoD: cytochrome o ubiquinol oxidase subunit IV 12 107 1.6E-39 T 17-10-2018 IPR014210 Cytochrome o ubiquinol oxidase subunit IV GO:0008827|GO:0015990|GO:0016021 VI35_14130 a645a1a853fc573e55d96c86bd7196c7 109 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 19 92 5.9E-19 T 17-10-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 VI35_03320 a740b8e6c93d1fac78dc0786ed7730cc 161 Pfam PF07308 Protein of unknown function (DUF1456) 3 76 3.7E-27 T 17-10-2018 IPR009921 Domain of unknown function DUF1456 VI35_03320 a740b8e6c93d1fac78dc0786ed7730cc 161 Pfam PF07308 Protein of unknown function (DUF1456) 92 158 1.7E-23 T 17-10-2018 IPR009921 Domain of unknown function DUF1456 VI35_08035 5506c0c216f899e6d1ca93dff3fbe6d0 132 Pfam PF07233 Protein of unknown function (DUF1425) 36 125 2.4E-25 T 17-10-2018 IPR010824 Protein of unknown function DUF1425 VI35_08035 5506c0c216f899e6d1ca93dff3fbe6d0 132 Gene3D G3DSA:2.60.40.3230 18 129 4.5E-26 T 17-10-2018 IPR038483 YcfL-like superfamily VI35_13290 42305f5cad0703362a3a324e31c44528 157 Pfam PF04657 Putative inner membrane exporter, YdcZ 4 144 3.0E-31 T 17-10-2018 IPR006750 Putative inner membrane exporter, YdcZ VI35_07245 f0a89f41c29fb860290a0a9f685e2fe8 258 Pfam PF06629 MltA-interacting protein MipA 40 256 1.4E-37 T 17-10-2018 IPR010583 MltA-interacting MipA VI35_10270 debc498ea07748dc244a7c56c9fff6bc 62 Pfam PF14056 Domain of unknown function (DUF4250) 8 61 1.4E-23 T 17-10-2018 IPR025346 Protein of unknown function DUF4250 VI35_16415 4ca2418ec0f88070c1949b15e4070c74 342 Gene3D G3DSA:1.10.3470.10 3 341 3.0E-103 T 17-10-2018 IPR037294 ABC transporter, BtuC-like VI35_16415 4ca2418ec0f88070c1949b15e4070c74 342 SUPERFAMILY SSF81345 4 337 1.7E-81 T 17-10-2018 IPR037294 ABC transporter, BtuC-like VI35_16415 4ca2418ec0f88070c1949b15e4070c74 342 Pfam PF01032 FecCD transport family 16 337 6.8E-90 T 17-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 VI35_15615 efc0e64c5cf605f586233070cb3e1bea 101 Pfam PF11740 Plasmid replication region DNA-binding N-term 4 91 4.0E-6 T 17-10-2018 IPR021104 KfrA, N-terminal DNA-binding domain VI35_08215 ca423713c31737bb7b068c9797d597d6 157 Pfam PF14267 Domain of unknown function (DUF4357) 93 147 2.8E-18 T 17-10-2018 IPR025579 Domain of unknown function DUF4357 VI35_16185 8311bd33da4c78d7aa624e89586d987e 368 Pfam PF03916 Polysulphide reductase, NrfD 10 308 1.2E-21 T 17-10-2018 IPR005614 NrfD family VI35_19295 fe3ac88f4d07797ce68b8edf20194f85 425 Pfam PF00999 Sodium/hydrogen exchanger family 31 415 9.4E-57 T 17-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 VI35_07045 cc97a2f86377f32314beaa933aa23ddc 55 Pfam PF10689 Protein of unknown function (DUF2496) 10 48 4.7E-21 T 17-10-2018 IPR019630 Protein of unknown function DUF2496, YbaM-related VI35_00745 e000dbceb05b8feba8097bb58a570709 286 SUPERFAMILY SSF53850 8 241 4.89E-10 T 17-10-2018 VI35_20855 f534aa00694111dcc0500a3ee45219d4 308 Pfam PF02653 Branched-chain amino acid transport system / permease component 12 292 1.7E-56 T 17-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 VI35_08645 63a6dc8f3c559b34cec065eab06c63fb 120 Pfam PF11042 Protein of unknown function (DUF2750) 13 115 8.7E-35 T 17-10-2018 IPR021284 Protein of unknown function DUF2750 VI35_10975 638a3feb048f659cfcb24fac6caf3019 59 Pfam PF05545 Cbb3-type cytochrome oxidase component FixQ 1 45 2.3E-12 T 17-10-2018 IPR008621 Cbb3-type cytochrome oxidase component VI35_19085 30ea8f33ca66d8ceb1701c7832ba75fb 66 Pfam PF13627 Prokaryotic lipoprotein-attachment site 9 30 4.0E-7 T 17-10-2018 IPR032831 Prokaryotic lipoprotein-attachment site VI35_20795 2147768bbb8881095fe5e7c0dc5366e2 134 Gene3D G3DSA:2.60.120.380 21 134 5.7E-34 T 17-10-2018 VI35_14080 99a921f7fa886effa2a9e4a728375c62 162 Pfam PF04657 Putative inner membrane exporter, YdcZ 25 158 8.5E-29 T 17-10-2018 IPR006750 Putative inner membrane exporter, YdcZ VI35_15940 94caa01a107c1f670f0b7cb52823c9da 209 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 134 209 3.9E-4 T 17-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 VI35_15940 94caa01a107c1f670f0b7cb52823c9da 209 Gene3D G3DSA:2.40.160.10 112 209 1.7E-5 T 17-10-2018 IPR023614 Porin domain superfamily VI35_15940 94caa01a107c1f670f0b7cb52823c9da 209 SUPERFAMILY SSF56935 36 209 3.48E-7 T 17-10-2018 VI35_03880 961344423fc9f5e78284b3916a665921 1245 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 836 926 4.4E-26 T 17-10-2018 IPR010221 VCBS repeat VI35_03880 961344423fc9f5e78284b3916a665921 1245 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 944 1034 4.6E-26 T 17-10-2018 IPR010221 VCBS repeat VI35_03880 961344423fc9f5e78284b3916a665921 1245 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 1160 1239 1.6E-23 T 17-10-2018 IPR010221 VCBS repeat VI35_03880 961344423fc9f5e78284b3916a665921 1245 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 296 386 1.6E-25 T 17-10-2018 IPR010221 VCBS repeat VI35_03880 961344423fc9f5e78284b3916a665921 1245 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 404 494 4.6E-26 T 17-10-2018 IPR010221 VCBS repeat VI35_03880 961344423fc9f5e78284b3916a665921 1245 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 1052 1142 6.5E-26 T 17-10-2018 IPR010221 VCBS repeat VI35_03880 961344423fc9f5e78284b3916a665921 1245 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 512 602 2.8E-25 T 17-10-2018 IPR010221 VCBS repeat VI35_03880 961344423fc9f5e78284b3916a665921 1245 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 80 170 4.6E-26 T 17-10-2018 IPR010221 VCBS repeat VI35_03880 961344423fc9f5e78284b3916a665921 1245 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 188 278 2.8E-25 T 17-10-2018 IPR010221 VCBS repeat VI35_03880 961344423fc9f5e78284b3916a665921 1245 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 728 818 4.6E-26 T 17-10-2018 IPR010221 VCBS repeat VI35_03880 961344423fc9f5e78284b3916a665921 1245 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 620 710 1.6E-25 T 17-10-2018 IPR010221 VCBS repeat VI35_03880 961344423fc9f5e78284b3916a665921 1245 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 10 62 3.5E-13 T 17-10-2018 IPR010221 VCBS repeat VI35_03920 196095fca029c8670bd9418a385ebdf4 102 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 17 96 1.3E-25 T 17-10-2018 IPR010221 VCBS repeat VI35_06570 e01abad9031190659b5de6a26946e0aa 73 Pfam PF10981 Protein of unknown function (DUF2788) 18 67 4.2E-20 T 17-10-2018 IPR021249 Protein of unknown function DUF2788 VI35_04130 3d9346f16510eb6a87dd1f08a2e3af9a 695 Pfam PF06082 Exopolysaccharide biosynthesis protein YbjH 29 691 4.9E-258 T 17-10-2018 IPR010344 Exopolysaccharide biosynthesis protein YbjH VI35_07570 7b65164c391aa943e264f9e440076ea7 141 Pfam PF13511 Domain of unknown function (DUF4124) 10 64 2.2E-6 T 17-10-2018 IPR025392 Domain of unknown function DUF4124 VI35_03060 547208814c977ff00a2f1350f9d57503 174 Pfam PF16157 Domain of unknown function (DUF4865) 1 132 1.7E-41 T 17-10-2018 IPR032349 Protein of unknown function DUF4865 VI35_13360 a138309b3222579301818f4ffe123939 172 Pfam PF09835 Uncharacterized protein conserved in bacteria (DUF2062) 22 164 1.7E-44 T 17-10-2018 IPR018639 Domain of unknown function DUF2062 VI35_13275 d18c0eeb1a8f92b12e79413b31a71a50 82 Pfam PF04226 Transglycosylase associated protein 33 81 2.7E-14 T 17-10-2018 IPR007341 Transglycosylase-associated protein GO:0016021 VI35_14625 27d63fd0089d16c01eade89e35fe6c82 158 SUPERFAMILY SSF56925 45 158 1.12E-6 T 17-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VI35_10485 b6de8867e904e5f89f42c8185a0f3324 179 Pfam PF05433 Glycine zipper 2TM domain 73 113 2.0E-11 T 17-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 VI35_13395 0fb9dcdd3277ccccadd3748d0ebc80c2 219 Pfam PF09829 Uncharacterized protein conserved in bacteria (DUF2057) 24 214 6.7E-47 T 17-10-2018 IPR018635 Uncharacterised protein family UPF0319 VI35_19420 51726acd516505b6057ddd800ad48075 281 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 30 49 1.2E-4 T 17-10-2018 IPR012902 Prokaryotic N-terminal methylation site VI35_15575 1793e68f1e10c5ba4facc405c58cdfe2 329 Pfam PF07148 Maltose operon periplasmic protein precursor (MalM) 88 222 1.1E-44 T 17-10-2018 IPR010794 Maltose operon periplasmic GO:0008643|GO:0042597 VI35_11625 9e9680c085ed866eccd70cc4cd935d01 432 Pfam PF03222 Tryptophan/tyrosine permease family 38 393 1.2E-13 T 17-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 VI35_11625 9e9680c085ed866eccd70cc4cd935d01 432 TIGRFAM TIGR00814 stp: serine transporter 27 421 4.0E-164 T 17-10-2018 IPR004694 Hydroxy amino acid transporter GO:0006865|GO:0015171|GO:0016021 VI35_19755 435de4584f536e0c4f784bd9e60eaeaa 126 Pfam PF01391 Collagen triple helix repeat (20 copies) 41 92 7.1E-10 T 17-10-2018 IPR008160 Collagen triple helix repeat VI35_19755 435de4584f536e0c4f784bd9e60eaeaa 126 Pfam PF01391 Collagen triple helix repeat (20 copies) 10 62 1.7E-10 T 17-10-2018 IPR008160 Collagen triple helix repeat VI35_15880 82096b693409f0e743aa415ffcefb6df 184 Pfam PF12915 Protein of unknown function (DUF3833) 20 181 4.9E-62 T 17-10-2018 IPR024409 Protein of unknown function DUF3833 VI35_16120 0738cabda9c926a9a82c46be92e7f806 85 Pfam PF06906 Protein of unknown function (DUF1272) 1 57 2.0E-29 T 17-10-2018 IPR010696 Protein of unknown function DUF1272 VI35_07505 be8f047acce0931f1eb25af2148dac68 309 Pfam PF02535 ZIP Zinc transporter 151 304 4.3E-25 T 17-10-2018 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 VI35_19655 124855792bb7ea7dcad098b97ace5ca4 208 Pfam PF07947 YhhN family 26 206 3.6E-51 T 17-10-2018 IPR012506 YhhN-like GO:0016021 VI35_03895 9efd0526b8d508b00aeb0dd448949e3a 210 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 17 107 4.9E-27 T 17-10-2018 IPR010221 VCBS repeat VI35_03895 9efd0526b8d508b00aeb0dd448949e3a 210 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 125 204 9.1E-25 T 17-10-2018 IPR010221 VCBS repeat VI35_08800 c8ab33c5b3a6c4de30e85ef4d630190c 92 Pfam PF08891 YfcL protein 5 87 1.4E-31 T 17-10-2018 IPR014987 Uncharacterised protein family YfcL VI35_16345 1019b15c54b96cc9ffbeceb0b3d65191 99 SUPERFAMILY SSF141488 23 96 7.19E-7 T 17-10-2018 IPR036328 C-type lysozyme inhibitor superfamily VI35_04115 b3107132340b2bdef1117842f506e5e2 110 Pfam PF04320 Protein with unknown function (DUF469) 6 106 2.4E-39 T 17-10-2018 IPR007416 Protein of unknown function DUF469 VI35_09780 01f09513381b74320e8d1cf11fa596e9 211 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 26 198 1.2E-31 T 17-10-2018 IPR003740 Uncharacterised membrane protein YitT VI35_02130 123ab1dca89287468db460616b4299a4 267 ProDom PD035357 TRANSFERASE 2.1.1.- LYSINE METHYLTRANSFERASE N-METHYLTRANSFERASE FLAGELLUM LYSINE-N-METHYLASE BIOSYNTHETIC FLAGELLIN N-METHYLATION 126 265 3.0E-9 T 17-10-2018 IPR020193 Flagellin lysine-N-methylase, C-terminal VI35_20315 b5530b41d486a9fcb0689aadf0a060ef 372 Pfam PF02653 Branched-chain amino acid transport system / permease component 56 342 1.5E-36 T 17-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085