locus-tag class description JJJ22_00010 PF01555 DNA methylase JJJ22_00025 PF00176 SNF2 family N-terminal domain JJJ22_00025 PF00271 Helicase conserved C-terminal domain JJJ22_00035 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A JJJ22_00080 PF04002 RadC-like JAB domain JJJ22_00120 PF02796 Helix-turn-helix domain of resolvase JJJ22_00120 PF00239 Resolvase, N terminal domain JJJ22_00130 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ JJJ22_00135 PF00239 Resolvase, N terminal domain JJJ22_00135 PF02796 Helix-turn-helix domain of resolvase JJJ22_00170 PF02796 Helix-turn-helix domain of resolvase JJJ22_00170 PF00239 Resolvase, N terminal domain JJJ22_00175 PF00873 AcrB/AcrD/AcrF family JJJ22_00195 PF00293 NUDIX domain JJJ22_00200 PF00665 Integrase core domain JJJ22_00205 PF01695 IstB-like ATP binding protein JJJ22_00210 PF12161 HsdM N-terminal domain JJJ22_00210 PF02384 N-6 DNA Methylase JJJ22_00220 PF12008 Type I restriction and modification enzyme - subunit R C terminal JJJ22_00220 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JJJ22_00220 PF18766 SWI2/SNF2 ATPase JJJ22_00225 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A JJJ22_00270 PF04002 RadC-like JAB domain JJJ22_00315 PF05711 Macrocin-O-methyltransferase (TylF) JJJ22_00320 PF08007 Cupin superfamily protein JJJ22_00355 PF12008 Type I restriction and modification enzyme - subunit R C terminal JJJ22_00355 PF18766 SWI2/SNF2 ATPase JJJ22_00355 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JJJ22_00360 PF01420 Type I restriction modification DNA specificity domain JJJ22_00390 PF05930 Prophage CP4-57 regulatory protein (AlpA) JJJ22_00410 PF01381 Helix-turn-helix JJJ22_00440 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JJJ22_00440 PF12833 Helix-turn-helix domain JJJ22_00450 PF01609 Transposase DDE domain JJJ22_00450 PF13808 DDE_Tnp_1-associated JJJ22_00460 PF13006 Insertion element 4 transposase N-terminal JJJ22_00460 PF01609 Transposase DDE domain JJJ22_00475 PF01609 Transposase DDE domain JJJ22_00560 PF01385 Probable transposase JJJ22_00560 PF07282 Putative transposase DNA-binding domain JJJ22_00560 PF12323 Helix-turn-helix domain JJJ22_00565 PF13358 DDE superfamily endonuclease JJJ22_00650 PF02080 TrkA-C domain JJJ22_00650 PF06826 Predicted Permease Membrane Region JJJ22_00655 PF03006 Haemolysin-III related JJJ22_00660 PF00282 Pyridoxal-dependent decarboxylase conserved domain JJJ22_00665 PF04279 Intracellular septation protein A JJJ22_00670 PF03795 YCII-related domain JJJ22_00675 PF00459 Inositol monophosphatase family JJJ22_00685 PF00483 Nucleotidyl transferase JJJ22_00690 PF00854 POT family JJJ22_00695 PF00072 Response regulator receiver domain JJJ22_00725 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JJJ22_00730 PF02321 Outer membrane efflux protein JJJ22_00735 PF01207 Dihydrouridine synthase (Dus) JJJ22_00740 PF02954 Bacterial regulatory protein, Fis family JJJ22_00745 PF01810 LysE type translocator JJJ22_00775 PF01521 Iron-sulphur cluster biosynthesis JJJ22_00785 PF00654 Voltage gated chloride channel JJJ22_00790 PF00202 Aminotransferase class-III JJJ22_00805 PF01569 PAP2 superfamily JJJ22_00815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_00815 PF03466 LysR substrate binding domain JJJ22_00820 PF00893 Small Multidrug Resistance protein JJJ22_00825 PF00893 Small Multidrug Resistance protein JJJ22_00830 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JJJ22_00835 PF14814 Bifunctional transglycosylase second domain JJJ22_00835 PF00905 Penicillin binding protein transpeptidase domain JJJ22_00835 PF00912 Transglycosylase JJJ22_00840 PF04408 Helicase associated domain (HA2) JJJ22_00840 PF00271 Helicase conserved C-terminal domain JJJ22_00840 PF00270 DEAD/DEAH box helicase JJJ22_00840 PF08482 ATP-dependent helicase C-terminal JJJ22_00850 PF17746 SfsA N-terminal OB domain JJJ22_00850 PF03749 Sugar fermentation stimulation protein RE domain JJJ22_00855 PF01258 Prokaryotic dksA/traR C4-type zinc finger JJJ22_00860 PF00749 tRNA synthetases class I (E and Q), catalytic domain JJJ22_00865 PF01743 Poly A polymerase head domain JJJ22_00865 PF12627 Probable RNA and SrmB- binding site of polymerase A JJJ22_00865 PF12626 Polymerase A arginine-rich C-terminus JJJ22_00870 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JJJ22_00875 PF02548 Ketopantoate hydroxymethyltransferase JJJ22_00880 PF02569 Pantoate-beta-alanine ligase JJJ22_00890 PF01061 ABC-2 type transporter JJJ22_00895 PF00005 ABC transporter JJJ22_00900 PF00156 Phosphoribosyl transferase domain JJJ22_00905 PF00440 Bacterial regulatory proteins, tetR family JJJ22_00910 PF02441 Flavoprotein JJJ22_00915 PF01225 Mur ligase family, catalytic domain JJJ22_00915 PF02875 Mur ligase family, glutamate ligase domain JJJ22_00915 PF08245 Mur ligase middle domain JJJ22_00920 PF00719 Inorganic pyrophosphatase JJJ22_00935 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) JJJ22_00950 PF00005 ABC transporter JJJ22_00970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJJ22_00970 PF08447 PAS fold JJJ22_00995 PF02080 TrkA-C domain JJJ22_00995 PF03600 Citrate transporter JJJ22_01000 PF00009 Elongation factor Tu GTP binding domain JJJ22_01005 PF01507 Phosphoadenosine phosphosulfate reductase family JJJ22_01010 PF10414 Sirohaem synthase dimerisation region JJJ22_01010 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JJJ22_01010 PF14824 Sirohaem biosynthesis protein central JJJ22_01015 PF01145 SPFH domain / Band 7 family JJJ22_01015 PF16200 C-terminal region of band_7 JJJ22_01020 PF01957 NfeD-like C-terminal, partner-binding JJJ22_01030 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JJJ22_01030 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JJJ22_01035 PF07690 Major Facilitator Superfamily JJJ22_01040 PF01725 Ham1 family JJJ22_01045 PF06969 HemN C-terminal domain JJJ22_01045 PF04055 Radical SAM superfamily JJJ22_01050 PF03889 Alternative ribosome-rescue factor A JJJ22_01060 PF13411 MerR HTH family regulatory protein JJJ22_01065 PF02142 MGS-like domain JJJ22_01065 PF01808 AICARFT/IMPCHase bienzyme JJJ22_01070 PF02844 Phosphoribosylglycinamide synthetase, N domain JJJ22_01070 PF02843 Phosphoribosylglycinamide synthetase, C domain JJJ22_01070 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JJJ22_01090 PF00128 Alpha amylase, catalytic domain JJJ22_01100 PF04851 Type III restriction enzyme, res subunit JJJ22_01100 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) JJJ22_01100 PF08463 EcoEI R protein C-terminal JJJ22_01100 PF00271 Helicase conserved C-terminal domain JJJ22_01105 PF01420 Type I restriction modification DNA specificity domain JJJ22_01110 PF12161 HsdM N-terminal domain JJJ22_01110 PF02384 N-6 DNA Methylase JJJ22_01130 PF00140 Sigma-70 factor, region 1.2 JJJ22_01130 PF04546 Sigma-70, non-essential region JJJ22_01130 PF03979 Sigma-70 factor, region 1.1 JJJ22_01130 PF04545 Sigma-70, region 4 JJJ22_01130 PF04542 Sigma-70 region 2 JJJ22_01130 PF04539 Sigma-70 region 3 JJJ22_01135 PF08275 DNA primase catalytic core, N-terminal domain JJJ22_01135 PF10410 DnaB-helicase binding domain of primase JJJ22_01135 PF08278 DNA primase DnaG DnaB-binding JJJ22_01135 PF01807 CHC2 zinc finger JJJ22_01140 PF09424 Yqey-like protein JJJ22_01145 PF01165 Ribosomal protein S21 JJJ22_01150 PF00814 Glycoprotease family JJJ22_01155 PF04545 Sigma-70, region 4 JJJ22_01155 PF04539 Sigma-70 region 3 JJJ22_01155 PF04542 Sigma-70 region 2 JJJ22_01155 PF00140 Sigma-70 factor, region 1.2 JJJ22_01160 PF01551 Peptidase family M23 JJJ22_01160 PF01476 LysM domain JJJ22_01165 PF09335 SNARE associated Golgi protein JJJ22_01175 PF01975 Survival protein SurE JJJ22_01180 PF01142 tRNA pseudouridine synthase D (TruD) JJJ22_01185 PF02542 YgbB family JJJ22_01190 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JJJ22_01195 PF04977 Septum formation initiator JJJ22_01200 PF00113 Enolase, C-terminal TIM barrel domain JJJ22_01200 PF03952 Enolase, N-terminal domain JJJ22_01205 PF00117 Glutamine amidotransferase class-I JJJ22_01205 PF06418 CTP synthase N-terminus JJJ22_01210 PF03819 MazG nucleotide pyrophosphohydrolase domain JJJ22_01215 PF02824 TGS domain JJJ22_01215 PF04607 Region found in RelA / SpoT proteins JJJ22_01215 PF13291 ACT domain JJJ22_01220 PF05958 tRNA (Uracil-5-)-methyltransferase JJJ22_01220 PF01938 TRAM domain JJJ22_01225 PF01627 Hpt domain JJJ22_01225 PF00512 His Kinase A (phospho-acceptor) domain JJJ22_01225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_01225 PF00672 HAMP domain JJJ22_01225 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JJJ22_01225 PF00072 Response regulator receiver domain JJJ22_01230 PF07308 Protein of unknown function (DUF1456) JJJ22_01235 PF01510 N-acetylmuramoyl-L-alanine amidase JJJ22_01240 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ JJJ22_01245 PF02565 Recombination protein O C terminal JJJ22_01245 PF11967 Recombination protein O N terminal JJJ22_01250 PF07650 KH domain JJJ22_01250 PF01926 50S ribosome-binding GTPase JJJ22_01255 PF14622 Ribonuclease-III-like JJJ22_01255 PF00035 Double-stranded RNA binding motif JJJ22_01260 PF10502 Signal peptidase, peptidase S26 JJJ22_01265 PF00679 Elongation factor G C-terminus JJJ22_01265 PF00009 Elongation factor Tu GTP binding domain JJJ22_01265 PF03144 Elongation factor Tu domain 2 JJJ22_01265 PF06421 GTP-binding protein LepA C-terminus JJJ22_01275 PF03888 MucB/RseB N-terminal domain JJJ22_01275 PF17188 MucB/RseB C-terminal domain JJJ22_01280 PF03872 Anti sigma-E protein RseA, N-terminal domain JJJ22_01280 PF03873 Anti sigma-E protein RseA, C-terminal domain JJJ22_01285 PF08281 Sigma-70, region 4 JJJ22_01285 PF04542 Sigma-70 region 2 JJJ22_01290 PF02910 Fumarate reductase flavoprotein C-term JJJ22_01290 PF00890 FAD binding domain JJJ22_01300 PF03937 Flavinator of succinate dehydrogenase JJJ22_01305 PF01571 Aminomethyltransferase folate-binding domain JJJ22_01310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_01310 PF03466 LysR substrate binding domain JJJ22_01325 PF03091 CutA1 divalent ion tolerance protein JJJ22_01330 PF11412 Disulphide bond corrector protein DsbC JJJ22_01330 PF02683 Cytochrome C biogenesis protein transmembrane region JJJ22_01340 PF01266 FAD dependent oxidoreductase JJJ22_01345 PF01116 Fructose-bisphosphate aldolase class-II JJJ22_01350 PF00162 Phosphoglycerate kinase JJJ22_01355 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JJJ22_01355 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JJJ22_01360 PF00480 ROK family JJJ22_01365 PF01208 Uroporphyrinogen decarboxylase (URO-D) JJJ22_01370 PF00293 NUDIX domain JJJ22_01370 PF09297 NADH pyrophosphatase zinc ribbon domain JJJ22_01375 PF08239 Bacterial SH3 domain JJJ22_01380 PF00520 Ion transport protein JJJ22_01380 PF00027 Cyclic nucleotide-binding domain JJJ22_01385 PF02743 Cache domain JJJ22_01385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJJ22_01385 PF00672 HAMP domain JJJ22_01395 PF03710 Glutamate-ammonia ligase adenylyltransferase JJJ22_01395 PF08335 GlnD PII-uridylyltransferase JJJ22_01410 PF00326 Prolyl oligopeptidase family JJJ22_01410 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JJJ22_01420 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_01425 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_01430 PF00005 ABC transporter JJJ22_01435 PF00497 Bacterial extracellular solute-binding proteins, family 3 JJJ22_01440 PF13194 Domain of unknown function (DUF4010) JJJ22_01445 PF14602 Hexapeptide repeat of succinyl-transferase JJJ22_01445 PF12464 Maltose acetyltransferase JJJ22_01475 PF14552 Tautomerase enzyme JJJ22_01485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_01485 PF03466 LysR substrate binding domain JJJ22_01490 PF00206 Lyase JJJ22_01490 PF14698 Argininosuccinate lyase C-terminal JJJ22_01495 PF00764 Arginosuccinate synthase JJJ22_01500 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JJJ22_01500 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JJJ22_01505 PF00696 Amino acid kinase family JJJ22_01510 PF01118 Semialdehyde dehydrogenase, NAD binding domain JJJ22_01510 PF02774 Semialdehyde dehydrogenase, dimerisation domain JJJ22_01515 PF07687 Peptidase dimerisation domain JJJ22_01515 PF01546 Peptidase family M20/M25/M40 JJJ22_01520 PF00311 Phosphoenolpyruvate carboxylase JJJ22_01525 PF13426 PAS domain JJJ22_01525 PF00563 EAL domain JJJ22_01525 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_01525 PF05231 MASE1 JJJ22_01525 PF08448 PAS fold JJJ22_01525 PF08447 PAS fold JJJ22_01530 PF04073 Aminoacyl-tRNA editing domain JJJ22_01550 PF00155 Aminotransferase class I and II JJJ22_01550 PF00392 Bacterial regulatory proteins, gntR family JJJ22_01565 PF03466 LysR substrate binding domain JJJ22_01565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_01570 PF03788 LrgA family JJJ22_01575 PF04172 LrgB-like family JJJ22_01580 PF00696 Amino acid kinase family JJJ22_01580 PF00742 Homoserine dehydrogenase JJJ22_01580 PF03447 Homoserine dehydrogenase, NAD binding domain JJJ22_01585 PF01053 Cys/Met metabolism PLP-dependent enzyme JJJ22_01590 PF01340 Met Apo-repressor, MetJ JJJ22_01600 PF01588 Putative tRNA binding domain JJJ22_01605 PF03222 Tryptophan/tyrosine permease family JJJ22_01610 PF00459 Inositol monophosphatase family JJJ22_01615 PF00293 NUDIX domain JJJ22_01620 PF13419 Haloacid dehalogenase-like hydrolase JJJ22_01625 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JJJ22_01630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_01630 PF03466 LysR substrate binding domain JJJ22_01635 PF01479 S4 domain JJJ22_01635 PF00579 tRNA synthetases class I (W and Y) JJJ22_01640 PF00196 Bacterial regulatory proteins, luxR family JJJ22_01645 PF01203 Type II secretion system (T2SS), protein N JJJ22_01650 PF04612 Type II secretion system (T2SS), protein M JJJ22_01655 PF05134 Type II secretion system (T2SS), protein L JJJ22_01655 PF12693 GspL periplasmic domain JJJ22_01660 PF03934 Type II secretion system (T2SS), protein K JJJ22_01670 PF07963 Prokaryotic N-terminal methylation motif JJJ22_01670 PF11612 Type II secretion system (T2SS), protein J JJJ22_01675 PF07963 Prokaryotic N-terminal methylation motif JJJ22_01675 PF02501 Type II secretion system (T2SS), protein I JJJ22_01680 PF07963 Prokaryotic N-terminal methylation motif JJJ22_01680 PF12019 Type II transport protein GspH JJJ22_01685 PF07963 Prokaryotic N-terminal methylation motif JJJ22_01685 PF08334 Type II secretion system (T2SS), protein G JJJ22_01690 PF00482 Type II secretion system (T2SS), protein F JJJ22_01695 PF00437 Type II/IV secretion system protein JJJ22_01700 PF00263 Bacterial type II and III secretion system protein JJJ22_01700 PF03958 Bacterial type II/III secretion system short domain JJJ22_01705 PF11356 Type II secretion system protein C JJJ22_01710 PF01479 S4 domain JJJ22_01715 PF01430 Hsp33 protein JJJ22_01720 PF01293 Phosphoenolpyruvate carboxykinase JJJ22_01725 PF00392 Bacterial regulatory proteins, gntR family JJJ22_01730 PF01321 Creatinase/Prolidase N-terminal domain JJJ22_01730 PF00557 Metallopeptidase family M24 JJJ22_01740 PF05433 Glycine zipper 2TM domain JJJ22_01745 PF01928 CYTH domain JJJ22_01750 PF01865 Protein of unknown function DUF47 JJJ22_01755 PF01384 Phosphate transporter family JJJ22_01760 PF01966 HD domain JJJ22_01760 PF12627 Probable RNA and SrmB- binding site of polymerase A JJJ22_01760 PF01743 Poly A polymerase head domain JJJ22_01765 PF13401 AAA domain JJJ22_01765 PF01471 Putative peptidoglycan binding domain JJJ22_01770 PF16537 Type II secretion system protein B JJJ22_01775 PF14815 NUDIX domain JJJ22_01775 PF00633 Helix-hairpin-helix motif JJJ22_01775 PF10576 Iron-sulfur binding domain of endonuclease III JJJ22_01775 PF00730 HhH-GPD superfamily base excision DNA repair protein JJJ22_01780 PF04362 Bacterial Fe(2+) trafficking JJJ22_01785 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain JJJ22_01785 PF01464 Transglycosylase SLT domain JJJ22_01795 PF00657 GDSL-like Lipase/Acylhydrolase JJJ22_01800 PF01389 OmpA-like transmembrane domain JJJ22_01800 PF00691 OmpA family JJJ22_01805 PF03886 ABC-type transport auxiliary lipoprotein component JJJ22_01810 PF02470 MlaD protein JJJ22_01815 PF04403 Paraquat-inducible protein A JJJ22_01820 PF17209 Hfq protein JJJ22_01825 PF13419 Haloacid dehalogenase-like hydrolase JJJ22_01830 PF00360 Phytochrome region JJJ22_01830 PF00563 EAL domain JJJ22_01830 PF01590 GAF domain JJJ22_01830 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_01835 PF00701 Dihydrodipicolinate synthetase family JJJ22_01840 PF05175 Methyltransferase small domain JJJ22_01840 PF08468 Methyltransferase small domain N-terminal JJJ22_01845 PF00483 Nucleotidyl transferase JJJ22_01850 PF08323 Starch synthase catalytic domain JJJ22_01850 PF00534 Glycosyl transferases group 1 JJJ22_01895 PF07883 Cupin domain JJJ22_01895 PF01381 Helix-turn-helix JJJ22_01900 PF03594 Benzoate membrane transport protein JJJ22_01910 PF02219 Methylenetetrahydrofolate reductase JJJ22_01925 PF12729 Four helix bundle sensory module for signal transduction JJJ22_01925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJJ22_01925 PF00672 HAMP domain JJJ22_01930 PF03922 OmpW family JJJ22_01935 PF17760 UvrA interaction domain JJJ22_01935 PF00005 ABC transporter JJJ22_01935 PF17755 UvrA DNA-binding domain JJJ22_01940 PF00196 Bacterial regulatory proteins, luxR family JJJ22_01945 PF00436 Single-strand binding protein family JJJ22_01975 PF13538 UvrD-like helicase C-terminal domain JJJ22_01980 PF09722 Protein of unknown function (DUF2384) JJJ22_01990 PF01695 IstB-like ATP binding protein JJJ22_02005 PF09722 Protein of unknown function (DUF2384) JJJ22_02030 PF00313 'Cold-shock' DNA-binding domain JJJ22_02035 PF00512 His Kinase A (phospho-acceptor) domain JJJ22_02035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_02035 PF00672 HAMP domain JJJ22_02040 PF00072 Response regulator receiver domain JJJ22_02040 PF00486 Transcriptional regulatory protein, C terminal JJJ22_02050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJJ22_02050 PF00672 HAMP domain JJJ22_02060 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_02060 PF08448 PAS fold JJJ22_02065 PF00543 Nitrogen regulatory protein P-II JJJ22_02070 PF00909 Ammonium Transporter Family JJJ22_02080 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JJJ22_02085 PF09190 DALR domain JJJ22_02085 PF01406 tRNA synthetases class I (C) catalytic domain JJJ22_02095 PF13538 UvrD-like helicase C-terminal domain JJJ22_02100 PF12705 PD-(D/E)XK nuclease superfamily JJJ22_02100 PF13361 UvrD-like helicase C-terminal domain JJJ22_02100 PF00580 UvrD/REP helicase N-terminal domain JJJ22_02105 PF17946 RecC C-terminal domain JJJ22_02110 PF07681 DoxX JJJ22_02115 PF17954 Quercetinase C-terminal cupin domain JJJ22_02115 PF02678 Pirin JJJ22_02125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_02125 PF03466 LysR substrate binding domain JJJ22_02135 PF00392 Bacterial regulatory proteins, gntR family JJJ22_02135 PF07702 UTRA domain JJJ22_02150 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_02160 PF00005 ABC transporter JJJ22_02160 PF08402 TOBE domain JJJ22_02170 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_02170 PF00072 Response regulator receiver domain JJJ22_02190 PF00583 Acetyltransferase (GNAT) family JJJ22_02195 PF06628 Catalase-related immune-responsive JJJ22_02195 PF00199 Catalase JJJ22_02215 PF00293 NUDIX domain JJJ22_02220 PF01594 AI-2E family transporter JJJ22_02225 PF00106 short chain dehydrogenase JJJ22_02230 PF04371 Porphyromonas-type peptidyl-arginine deiminase JJJ22_02240 PF13416 Bacterial extracellular solute-binding protein JJJ22_02250 PF04371 Porphyromonas-type peptidyl-arginine deiminase JJJ22_02255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_02255 PF03466 LysR substrate binding domain JJJ22_02260 PF02954 Bacterial regulatory protein, Fis family JJJ22_02260 PF00989 PAS fold JJJ22_02260 PF00158 Sigma-54 interaction domain JJJ22_02265 PF00381 PTS HPr component phosphorylation site JJJ22_02265 PF05524 PEP-utilising enzyme, N-terminal JJJ22_02265 PF00391 PEP-utilising enzyme, mobile domain JJJ22_02265 PF03610 PTS system fructose IIA component JJJ22_02270 PF02734 DAK2 domain JJJ22_02275 PF02733 Dak1 domain JJJ22_02280 PF00860 Permease family JJJ22_02290 PF03079 ARD/ARD' family JJJ22_02330 PF01196 Ribosomal protein L17 JJJ22_02335 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JJJ22_02335 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JJJ22_02335 PF01000 RNA polymerase Rpb3/RpoA insert domain JJJ22_02340 PF01479 S4 domain JJJ22_02340 PF00163 Ribosomal protein S4/S9 N-terminal domain JJJ22_02345 PF00411 Ribosomal protein S11 JJJ22_02350 PF00416 Ribosomal protein S13/S18 JJJ22_02355 PF00444 Ribosomal protein L36 JJJ22_02360 PF00344 SecY translocase JJJ22_02365 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JJJ22_02370 PF00327 Ribosomal protein L30p/L7e JJJ22_02375 PF03719 Ribosomal protein S5, C-terminal domain JJJ22_02375 PF00333 Ribosomal protein S5, N-terminal domain JJJ22_02380 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JJJ22_02385 PF00347 Ribosomal protein L6 JJJ22_02390 PF00410 Ribosomal protein S8 JJJ22_02395 PF00253 Ribosomal protein S14p/S29e JJJ22_02400 PF00281 Ribosomal protein L5 JJJ22_02400 PF00673 ribosomal L5P family C-terminus JJJ22_02405 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JJJ22_02405 PF00467 KOW motif JJJ22_02410 PF00238 Ribosomal protein L14p/L23e JJJ22_02415 PF00366 Ribosomal protein S17 JJJ22_02420 PF00831 Ribosomal L29 protein JJJ22_02425 PF00252 Ribosomal protein L16p/L10e JJJ22_02430 PF07650 KH domain JJJ22_02430 PF00189 Ribosomal protein S3, C-terminal domain JJJ22_02435 PF00237 Ribosomal protein L22p/L17e JJJ22_02440 PF00203 Ribosomal protein S19 JJJ22_02445 PF03947 Ribosomal Proteins L2, C-terminal domain JJJ22_02445 PF00181 Ribosomal Proteins L2, RNA binding domain JJJ22_02450 PF00276 Ribosomal protein L23 JJJ22_02455 PF00573 Ribosomal protein L4/L1 family JJJ22_02460 PF00297 Ribosomal protein L3 JJJ22_02465 PF00338 Ribosomal protein S10p/S20e JJJ22_02475 PF00512 His Kinase A (phospho-acceptor) domain JJJ22_02475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_02475 PF00672 HAMP domain JJJ22_02480 PF00072 Response regulator receiver domain JJJ22_02480 PF00486 Transcriptional regulatory protein, C terminal JJJ22_02485 PF03449 Transcription elongation factor, N-terminal JJJ22_02485 PF01272 Transcription elongation factor, GreA/GreB, C-term JJJ22_02490 PF16921 Tex protein YqgF-like domain JJJ22_02490 PF09371 Tex-like protein N-terminal domain JJJ22_02490 PF00575 S1 RNA binding domain JJJ22_02490 PF17674 HHH domain JJJ22_02505 PF00561 alpha/beta hydrolase fold JJJ22_02510 PF00156 Phosphoribosyl transferase domain JJJ22_02515 PF01106 NifU-like domain JJJ22_02515 PF01521 Iron-sulphur cluster biosynthesis JJJ22_02520 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JJJ22_02520 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JJJ22_02525 PF02556 Preprotein translocase subunit SecB JJJ22_02530 PF00581 Rhodanese-like domain JJJ22_02535 PF06415 BPG-independent PGAM N-terminus (iPGM_N) JJJ22_02535 PF01676 Metalloenzyme superfamily JJJ22_02540 PF01551 Peptidase family M23 JJJ22_02550 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JJJ22_02550 PF00356 Bacterial regulatory proteins, lacI family JJJ22_02565 PF01081 KDPG and KHG aldolase JJJ22_02570 PF00920 Dehydratase family JJJ22_02575 PF01202 Shikimate kinase JJJ22_02580 PF02447 GntP family permease JJJ22_02585 PF13091 PLD-like domain JJJ22_02590 PF17191 RecG wedge domain JJJ22_02590 PF00271 Helicase conserved C-terminal domain JJJ22_02590 PF00270 DEAD/DEAH box helicase JJJ22_02600 PF09500 Putative thioesterase (yiiD_Cterm) JJJ22_02600 PF00583 Acetyltransferase (GNAT) family JJJ22_02610 PF02580 D-Tyr-tRNA(Tyr) deacylase JJJ22_02615 PF03631 Virulence factor BrkB JJJ22_02620 PF00679 Elongation factor G C-terminus JJJ22_02620 PF03144 Elongation factor Tu domain 2 JJJ22_02620 PF00009 Elongation factor Tu GTP binding domain JJJ22_02625 PF00120 Glutamine synthetase, catalytic domain JJJ22_02625 PF03951 Glutamine synthetase, beta-Grasp domain JJJ22_02635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_02635 PF00512 His Kinase A (phospho-acceptor) domain JJJ22_02635 PF00989 PAS fold JJJ22_02640 PF00072 Response regulator receiver domain JJJ22_02640 PF02954 Bacterial regulatory protein, Fis family JJJ22_02640 PF00158 Sigma-54 interaction domain JJJ22_02645 PF00962 Adenosine/AMP deaminase JJJ22_02650 PF06969 HemN C-terminal domain JJJ22_02650 PF04055 Radical SAM superfamily JJJ22_02655 PF10675 Protein of unknown function (DUF2489) JJJ22_02660 PF04220 Der GTPase activator (YihI) JJJ22_02675 PF00034 Cytochrome c JJJ22_02680 PF01926 50S ribosome-binding GTPase JJJ22_02690 PF08501 Shikimate dehydrogenase substrate binding domain JJJ22_02690 PF01488 Shikimate / quinate 5-dehydrogenase JJJ22_02690 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JJJ22_02695 PF01218 Coproporphyrinogen III oxidase JJJ22_02700 PF01300 Telomere recombination JJJ22_02705 PF01396 Topoisomerase DNA binding C4 zinc finger JJJ22_02710 PF04361 Protein of unknown function (DUF494) JJJ22_02715 PF02481 DNA recombination-mediator protein A JJJ22_02715 PF17782 DprA winged helix domain JJJ22_02725 PF01327 Polypeptide deformylase JJJ22_02730 PF02911 Formyl transferase, C-terminal domain JJJ22_02730 PF00551 Formyl transferase JJJ22_02735 PF01189 16S rRNA methyltransferase RsmB/F JJJ22_02735 PF01029 NusB family JJJ22_02740 PF02254 TrkA-N domain JJJ22_02740 PF02080 TrkA-C domain JJJ22_02745 PF02386 Cation transport protein JJJ22_02750 PF02646 RmuC family JJJ22_02765 PF02082 Transcriptional regulator JJJ22_02770 PF00294 pfkB family carbohydrate kinase JJJ22_02775 PF03466 LysR substrate binding domain JJJ22_02775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_02780 PF00958 GMP synthase C terminal domain JJJ22_02780 PF00117 Glutamine amidotransferase class-I JJJ22_02780 PF02540 NAD synthase JJJ22_02785 PF00171 Aldehyde dehydrogenase family JJJ22_02790 PF00202 Aminotransferase class-III JJJ22_02795 PF01381 Helix-turn-helix JJJ22_02795 PF07883 Cupin domain JJJ22_02800 PF00171 Aldehyde dehydrogenase family JJJ22_02810 PF00892 EamA-like transporter family JJJ22_02815 PF12833 Helix-turn-helix domain JJJ22_02820 PF01810 LysE type translocator JJJ22_02825 PF06206 CpeT/CpcT family (DUF1001) JJJ22_02830 PF01810 LysE type translocator JJJ22_02835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_02835 PF03466 LysR substrate binding domain JJJ22_02855 PF14001 YdfZ protein JJJ22_02870 PF03466 LysR substrate binding domain JJJ22_02870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_02890 PF13361 UvrD-like helicase C-terminal domain JJJ22_02890 PF00580 UvrD/REP helicase N-terminal domain JJJ22_02895 PF02608 ABC transporter substrate-binding protein PnrA-like JJJ22_02900 PF00005 ABC transporter JJJ22_02905 PF02653 Branched-chain amino acid transport system / permease component JJJ22_02910 PF02653 Branched-chain amino acid transport system / permease component JJJ22_02915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_02915 PF03466 LysR substrate binding domain JJJ22_02920 PF08240 Alcohol dehydrogenase GroES-like domain JJJ22_02920 PF00107 Zinc-binding dehydrogenase JJJ22_02925 PF00756 Putative esterase JJJ22_02940 PF12867 DinB superfamily JJJ22_02940 PF03781 Sulfatase-modifying factor enzyme 1 JJJ22_02945 PF13593 SBF-like CPA transporter family (DUF4137) JJJ22_02950 PF13520 Amino acid permease JJJ22_02955 PF01588 Putative tRNA binding domain JJJ22_02960 PF13520 Amino acid permease JJJ22_02965 PF04074 YhcH/YjgK/YiaL JJJ22_02970 PF16353 Domain of unknown function(DUF4981) JJJ22_02970 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JJJ22_02970 PF02929 Beta galactosidase small chain JJJ22_02970 PF02837 Glycosyl hydrolases family 2, sugar binding domain JJJ22_02970 PF00703 Glycosyl hydrolases family 2 JJJ22_02975 PF00356 Bacterial regulatory proteins, lacI family JJJ22_03010 PF00132 Bacterial transferase hexapeptide (six repeats) JJJ22_03015 PF01367 5'-3' exonuclease, C-terminal SAM fold JJJ22_03015 PF00476 DNA polymerase family A JJJ22_03015 PF01612 3'-5' exonuclease JJJ22_03015 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JJJ22_03025 PF06005 Cell division protein ZapB JJJ22_03035 PF00132 Bacterial transferase hexapeptide (six repeats) JJJ22_03035 PF06426 Serine acetyltransferase, N-terminal JJJ22_03040 PF16916 Dimerisation domain of Zinc Transporter JJJ22_03040 PF01545 Cation efflux family JJJ22_03045 PF00072 Response regulator receiver domain JJJ22_03045 PF00486 Transcriptional regulatory protein, C terminal JJJ22_03050 PF00512 His Kinase A (phospho-acceptor) domain JJJ22_03050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_03050 PF16527 Two-component sensor protein CpxA, periplasmic domain JJJ22_03050 PF00672 HAMP domain JJJ22_03055 PF00588 SpoU rRNA Methylase family JJJ22_03060 PF01554 MatE JJJ22_03065 PF02630 SCO1/SenC JJJ22_03075 PF01726 LexA DNA binding domain JJJ22_03075 PF00717 Peptidase S24-like JJJ22_03080 PF01553 Acyltransferase JJJ22_03085 PF01040 UbiA prenyltransferase family JJJ22_03090 PF04345 Chorismate lyase JJJ22_03095 PF03748 Flagellar basal body-associated protein FliL JJJ22_03125 PF04932 O-Antigen ligase JJJ22_03130 PF13439 Glycosyltransferase Family 4 JJJ22_03135 PF01370 NAD dependent epimerase/dehydratase family JJJ22_03140 PF00440 Bacterial regulatory proteins, tetR family JJJ22_03140 PF08360 QacR-like protein, C-terminal region JJJ22_03145 PF00155 Aminotransferase class I and II JJJ22_03150 PF00107 Zinc-binding dehydrogenase JJJ22_03150 PF08240 Alcohol dehydrogenase GroES-like domain JJJ22_03155 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JJJ22_03160 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_03160 PF03707 Bacterial signalling protein N terminal repeat JJJ22_03160 PF00563 EAL domain JJJ22_03165 PF13361 UvrD-like helicase C-terminal domain JJJ22_03165 PF00580 UvrD/REP helicase N-terminal domain JJJ22_03170 PF00266 Aminotransferase class-V JJJ22_03175 PF02657 Fe-S metabolism associated domain JJJ22_03180 PF00899 ThiF family JJJ22_03210 PF12724 Flavodoxin domain JJJ22_03215 PF02386 Cation transport protein JJJ22_03220 PF09186 Domain of unknown function (DUF1949) JJJ22_03220 PF01205 Uncharacterized protein family UPF0029 JJJ22_03225 PF00557 Metallopeptidase family M24 JJJ22_03230 PF13193 AMP-binding enzyme C-terminal domain JJJ22_03230 PF00501 AMP-binding enzyme JJJ22_03235 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JJJ22_03235 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JJJ22_03235 PF00378 Enoyl-CoA hydratase/isomerase JJJ22_03240 PF00108 Thiolase, N-terminal domain JJJ22_03240 PF02803 Thiolase, C-terminal domain JJJ22_03245 PF00486 Transcriptional regulatory protein, C terminal JJJ22_03245 PF00072 Response regulator receiver domain JJJ22_03250 PF00512 His Kinase A (phospho-acceptor) domain JJJ22_03250 PF00672 HAMP domain JJJ22_03250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_03255 PF01547 Bacterial extracellular solute-binding protein JJJ22_03265 PF01206 Sulfurtransferase TusA JJJ22_03270 PF01042 Endoribonuclease L-PSP JJJ22_03290 PF13488 Glycine zipper JJJ22_03290 PF00691 OmpA family JJJ22_03300 PF00857 Isochorismatase family JJJ22_03305 PF03352 Methyladenine glycosylase JJJ22_03310 PF02091 Glycyl-tRNA synthetase alpha subunit JJJ22_03315 PF05746 DALR anticodon binding domain JJJ22_03315 PF02092 Glycyl-tRNA synthetase beta subunit JJJ22_03325 PF00563 EAL domain JJJ22_03325 PF00360 Phytochrome region JJJ22_03325 PF01590 GAF domain JJJ22_03325 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_03345 PF03222 Tryptophan/tyrosine permease family JJJ22_03350 PF03222 Tryptophan/tyrosine permease family JJJ22_03355 PF01212 Beta-eliminating lyase JJJ22_03365 PF12801 4Fe-4S binding domain JJJ22_03375 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJJ22_03375 PF18113 Rubredoxin binding C-terminal domain JJJ22_03380 PF00258 Flavodoxin JJJ22_03380 PF00753 Metallo-beta-lactamase superfamily JJJ22_03380 PF00301 Rubredoxin JJJ22_03385 PF00158 Sigma-54 interaction domain JJJ22_03385 PF01590 GAF domain JJJ22_03390 PF00356 Bacterial regulatory proteins, lacI family JJJ22_03395 PF13458 Periplasmic binding protein JJJ22_03400 PF02653 Branched-chain amino acid transport system / permease component JJJ22_03405 PF11862 Domain of unknown function (DUF3382) JJJ22_03405 PF02653 Branched-chain amino acid transport system / permease component JJJ22_03410 PF00005 ABC transporter JJJ22_03410 PF12399 Branched-chain amino acid ATP-binding cassette transporter JJJ22_03415 PF00005 ABC transporter JJJ22_03425 PF01810 LysE type translocator JJJ22_03430 PF00581 Rhodanese-like domain JJJ22_03435 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease JJJ22_03435 PF01694 Rhomboid family JJJ22_03440 PF12262 Bacterial virulence factor lipase N-terminal JJJ22_03445 PF04380 Membrane fusogenic activity JJJ22_03450 PF00175 Oxidoreductase NAD-binding domain JJJ22_03455 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase JJJ22_03465 PF07498 Rho termination factor, N-terminal domain JJJ22_03465 PF07497 Rho termination factor, RNA-binding domain JJJ22_03465 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JJJ22_03470 PF00085 Thioredoxin JJJ22_03475 PF00270 DEAD/DEAH box helicase JJJ22_03475 PF00271 Helicase conserved C-terminal domain JJJ22_03480 PF02541 Ppx/GppA phosphatase family JJJ22_03495 PF04445 Putative SAM-dependent methyltransferase JJJ22_03500 PF03707 Bacterial signalling protein N terminal repeat JJJ22_03500 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_03500 PF00563 EAL domain JJJ22_03505 PF01432 Peptidase family M3 JJJ22_03510 PF00490 Delta-aminolevulinic acid dehydratase JJJ22_03515 PF01026 TatD related DNase JJJ22_03520 PF00902 Sec-independent protein translocase protein (TatC) JJJ22_03525 PF02416 mttA/Hcf106 family JJJ22_03530 PF02416 mttA/Hcf106 family JJJ22_03535 PF03109 ABC1 family JJJ22_03540 PF02036 SCP-2 sterol transfer family JJJ22_03545 PF01209 ubiE/COQ5 methyltransferase family JJJ22_03550 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JJJ22_03555 PF07969 Amidohydrolase family JJJ22_03590 PF03544 Gram-negative bacterial TonB protein C-terminal JJJ22_03595 PF02472 Biopolymer transport protein ExbD/TolR JJJ22_03600 PF01618 MotA/TolQ/ExbB proton channel family JJJ22_03605 PF01618 MotA/TolQ/ExbB proton channel family JJJ22_03615 PF03472 Autoinducer binding domain JJJ22_03615 PF00196 Bacterial regulatory proteins, luxR family JJJ22_03620 PF01380 SIS domain JJJ22_03625 PF00455 DeoR C terminal sensor domain JJJ22_03625 PF08220 DeoR-like helix-turn-helix domain JJJ22_03630 PF00072 Response regulator receiver domain JJJ22_03630 PF00486 Transcriptional regulatory protein, C terminal JJJ22_03635 PF00672 HAMP domain JJJ22_03635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_03635 PF00512 His Kinase A (phospho-acceptor) domain JJJ22_03640 PF00905 Penicillin binding protein transpeptidase domain JJJ22_03645 PF06123 Inner membrane protein CreD JJJ22_03650 PF12804 MobA-like NTP transferase domain JJJ22_03650 PF14602 Hexapeptide repeat of succinyl-transferase JJJ22_03650 PF00132 Bacterial transferase hexapeptide (six repeats) JJJ22_03655 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain JJJ22_03655 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JJJ22_03660 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JJJ22_03660 PF02874 ATP synthase alpha/beta family, beta-barrel domain JJJ22_03665 PF00231 ATP synthase JJJ22_03670 PF00306 ATP synthase alpha/beta chain, C terminal domain JJJ22_03670 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JJJ22_03670 PF02874 ATP synthase alpha/beta family, beta-barrel domain JJJ22_03675 PF00213 ATP synthase delta (OSCP) subunit JJJ22_03680 PF00430 ATP synthase B/B' CF(0) JJJ22_03685 PF00137 ATP synthase subunit C JJJ22_03690 PF00119 ATP synthase A chain JJJ22_03700 PF02195 ParB-like nuclease domain JJJ22_03700 PF17762 HTH domain found in ParB protein JJJ22_03705 PF13614 AAA domain JJJ22_03710 PF02527 rRNA small subunit methyltransferase G JJJ22_03715 PF01134 Glucose inhibited division protein A JJJ22_03715 PF13932 GidA associated domain JJJ22_03720 PF00258 Flavodoxin JJJ22_03725 PF07715 TonB-dependent Receptor Plug Domain JJJ22_03725 PF00593 TonB dependent receptor JJJ22_03730 PF00005 ABC transporter JJJ22_03735 PF00005 ABC transporter JJJ22_03740 PF01497 Periplasmic binding protein JJJ22_03745 PF01032 FecCD transport family JJJ22_03750 PF01926 50S ribosome-binding GTPase JJJ22_03750 PF12631 MnmE helical domain JJJ22_03750 PF10396 GTP-binding protein TrmE N-terminus JJJ22_03755 PF02096 60Kd inner membrane protein JJJ22_03755 PF14849 YidC periplasmic domain JJJ22_03760 PF01809 Putative membrane protein insertion efficiency factor JJJ22_03765 PF00825 Ribonuclease P JJJ22_03770 PF00468 Ribosomal protein L34 JJJ22_03780 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_03785 PF00497 Bacterial extracellular solute-binding proteins, family 3 JJJ22_03790 PF00308 Bacterial dnaA protein JJJ22_03790 PF08299 Bacterial dnaA protein helix-turn-helix JJJ22_03790 PF11638 DnaA N-terminal domain JJJ22_03795 PF02768 DNA polymerase III beta subunit, C-terminal domain JJJ22_03795 PF00712 DNA polymerase III beta subunit, N-terminal domain JJJ22_03795 PF02767 DNA polymerase III beta subunit, central domain JJJ22_03800 PF02463 RecF/RecN/SMC N terminal domain JJJ22_03805 PF00986 DNA gyrase B subunit, carboxyl terminus JJJ22_03805 PF00204 DNA gyrase B JJJ22_03805 PF01751 Toprim domain JJJ22_03805 PF18053 DNA gyrase B subunit insert domain JJJ22_03805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_03815 PF12833 Helix-turn-helix domain JJJ22_03815 PF02311 AraC-like ligand binding domain JJJ22_03820 PF12706 Beta-lactamase superfamily domain JJJ22_03825 PF00011 Hsp20/alpha crystallin family JJJ22_03830 PF00011 Hsp20/alpha crystallin family JJJ22_03835 PF00155 Aminotransferase class I and II JJJ22_03850 PF07690 Major Facilitator Superfamily JJJ22_03855 PF00072 Response regulator receiver domain JJJ22_03855 PF00486 Transcriptional regulatory protein, C terminal JJJ22_03860 PF13492 GAF domain JJJ22_03860 PF00512 His Kinase A (phospho-acceptor) domain JJJ22_03860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_03860 PF02702 Osmosensitive K+ channel His kinase sensor domain JJJ22_03860 PF13493 Domain of unknown function (DUF4118) JJJ22_03865 PF02669 K+-transporting ATPase, c chain JJJ22_03875 PF03814 Potassium-transporting ATPase A subunit JJJ22_03885 PF00578 AhpC/TSA family JJJ22_03890 PF00155 Aminotransferase class I and II JJJ22_03890 PF00392 Bacterial regulatory proteins, gntR family JJJ22_03895 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JJJ22_03895 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJJ22_03900 PF00497 Bacterial extracellular solute-binding proteins, family 3 JJJ22_03900 PF00512 His Kinase A (phospho-acceptor) domain JJJ22_03900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_03905 PF00873 AcrB/AcrD/AcrF family JJJ22_03910 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JJJ22_03915 PF00440 Bacterial regulatory proteins, tetR family JJJ22_03950 PF12146 Serine aminopeptidase, S33 JJJ22_03955 PF00132 Bacterial transferase hexapeptide (six repeats) JJJ22_03960 PF12105 SpoU, rRNA methylase, C-terminal JJJ22_03960 PF00588 SpoU rRNA Methylase family JJJ22_03965 PF04607 Region found in RelA / SpoT proteins JJJ22_03965 PF02824 TGS domain JJJ22_03965 PF13291 ACT domain JJJ22_03970 PF01192 RNA polymerase Rpb6 JJJ22_03975 PF00625 Guanylate kinase JJJ22_03980 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JJJ22_03995 PF00892 EamA-like transporter family JJJ22_04015 PF03466 LysR substrate binding domain JJJ22_04015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_04020 PF00579 tRNA synthetases class I (W and Y) JJJ22_04025 PF00582 Universal stress protein family JJJ22_04030 PF12241 Trans-2-enoyl-CoA reductase catalytic region JJJ22_04030 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase JJJ22_04030 PF07055 Enoyl reductase FAD binding domain JJJ22_04035 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_04035 PF05230 MASE2 domain JJJ22_04040 PF00210 Ferritin-like domain JJJ22_04050 PF07690 Major Facilitator Superfamily JJJ22_04055 PF01810 LysE type translocator JJJ22_04085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_04085 PF06580 Histidine kinase JJJ22_04085 PF07694 5TMR of 5TMR-LYT JJJ22_04090 PF00072 Response regulator receiver domain JJJ22_04090 PF04397 LytTr DNA-binding domain JJJ22_04095 PF07690 Major Facilitator Superfamily JJJ22_04100 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain JJJ22_04100 PF02222 ATP-grasp domain JJJ22_04105 PF00731 AIR carboxylase JJJ22_04110 PF00593 TonB dependent receptor JJJ22_04110 PF07715 TonB-dependent Receptor Plug Domain JJJ22_04115 PF01177 Asp/Glu/Hydantoin racemase JJJ22_04145 PF00583 Acetyltransferase (GNAT) family JJJ22_04145 PF13380 CoA binding domain JJJ22_04145 PF13607 Succinyl-CoA ligase like flavodoxin domain JJJ22_04155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_04155 PF03466 LysR substrate binding domain JJJ22_04160 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain JJJ22_04160 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain JJJ22_04165 PF00342 Phosphoglucose isomerase JJJ22_04175 PF00924 Mechanosensitive ion channel JJJ22_04175 PF05552 Conserved TM helix JJJ22_04190 PF00440 Bacterial regulatory proteins, tetR family JJJ22_04195 PF00692 dUTPase JJJ22_04200 PF04127 DNA / pantothenate metabolism flavoprotein JJJ22_04200 PF02441 Flavoprotein JJJ22_04205 PF04002 RadC-like JAB domain JJJ22_04210 PF00830 Ribosomal L28 family JJJ22_04215 PF00471 Ribosomal protein L33 JJJ22_04225 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JJJ22_04225 PF06827 Zinc finger found in FPG and IleRS JJJ22_04225 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JJJ22_04230 PF04393 Protein of unknown function (DUF535) JJJ22_04235 PF01467 Cytidylyltransferase-like JJJ22_04240 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JJJ22_04245 PF00535 Glycosyl transferase family 2 JJJ22_04250 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JJJ22_04255 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) JJJ22_04265 PF08340 Domain of unknown function (DUF1732) JJJ22_04265 PF03755 YicC-like family, N-terminal region JJJ22_04270 PF01138 3' exoribonuclease family, domain 1 JJJ22_04270 PF03725 3' exoribonuclease family, domain 2 JJJ22_04275 PF00156 Phosphoribosyl transferase domain JJJ22_04280 PF00403 Heavy-metal-associated domain JJJ22_04285 PF00376 MerR family regulatory protein JJJ22_04285 PF09278 MerR, DNA binding JJJ22_04290 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_04290 PF01590 GAF domain JJJ22_04290 PF00563 EAL domain JJJ22_04290 PF00360 Phytochrome region JJJ22_04295 PF06288 Protein of unknown function (DUF1040) JJJ22_04300 PF12801 4Fe-4S binding domain JJJ22_04300 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase JJJ22_04300 PF13746 4Fe-4S dicluster domain JJJ22_04305 PF01636 Phosphotransferase enzyme family JJJ22_04310 PF01323 DSBA-like thioredoxin domain JJJ22_04315 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family JJJ22_04315 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JJJ22_04320 PF00857 Isochorismatase family JJJ22_04330 PF04463 Protein of unknown function (DUF523) JJJ22_04335 PF01553 Acyltransferase JJJ22_04340 PF01553 Acyltransferase JJJ22_04345 PF01078 Magnesium chelatase, subunit ChlI JJJ22_04345 PF13335 Magnesium chelatase, subunit ChlI C-terminal JJJ22_04350 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JJJ22_04350 PF00205 Thiamine pyrophosphate enzyme, central domain JJJ22_04350 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JJJ22_04360 PF01063 Amino-transferase class IV JJJ22_04365 PF00920 Dehydratase family JJJ22_04370 PF00585 C-terminal regulatory domain of Threonine dehydratase JJJ22_04370 PF00291 Pyridoxal-phosphate dependent enzyme JJJ22_04375 PF01389 OmpA-like transmembrane domain JJJ22_04375 PF00691 OmpA family JJJ22_04385 PF00440 Bacterial regulatory proteins, tetR family JJJ22_04390 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JJJ22_04390 PF18074 Primosomal protein N C-terminal domain JJJ22_04390 PF17764 3′ DNA-binding domain (3′BD) JJJ22_04390 PF00270 DEAD/DEAH box helicase JJJ22_04390 PF00271 Helicase conserved C-terminal domain JJJ22_04395 PF01197 Ribosomal protein L31 JJJ22_04400 PF13460 NAD(P)H-binding JJJ22_04400 PF11066 Protein of unknown function (DUF2867) JJJ22_04405 PF03949 Malic enzyme, NAD binding domain JJJ22_04405 PF00390 Malic enzyme, N-terminal domain JJJ22_04415 PF00512 His Kinase A (phospho-acceptor) domain JJJ22_04415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_04415 PF00672 HAMP domain JJJ22_04425 PF00486 Transcriptional regulatory protein, C terminal JJJ22_04425 PF00072 Response regulator receiver domain JJJ22_04430 PF05958 tRNA (Uracil-5-)-methyltransferase JJJ22_04475 PF00128 Alpha amylase, catalytic domain JJJ22_04475 PF02903 Alpha amylase, N-terminal ig-like domain JJJ22_04490 PF00012 Hsp70 protein JJJ22_04495 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JJJ22_04495 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JJJ22_04500 PF05981 CreA protein JJJ22_04515 PF01258 Prokaryotic dksA/traR C4-type zinc finger JJJ22_04520 PF00120 Glutamine synthetase, catalytic domain JJJ22_04525 PF00202 Aminotransferase class-III JJJ22_04530 PF13416 Bacterial extracellular solute-binding protein JJJ22_04535 PF13416 Bacterial extracellular solute-binding protein JJJ22_04540 PF00005 ABC transporter JJJ22_04540 PF08402 TOBE domain JJJ22_04545 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_04550 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_04555 PF03473 MOSC domain JJJ22_04555 PF03475 3-alpha domain JJJ22_04570 PF03061 Thioesterase superfamily JJJ22_04575 PF00270 DEAD/DEAH box helicase JJJ22_04575 PF00271 Helicase conserved C-terminal domain JJJ22_04575 PF00570 HRDC domain JJJ22_04575 PF16124 RecQ zinc-binding JJJ22_04575 PF09382 RQC domain JJJ22_04580 PF00034 Cytochrome c JJJ22_04585 PF02696 Uncharacterized ACR, YdiU/UPF0061 family JJJ22_04595 PF02592 Putative vitamin uptake transporter JJJ22_04600 PF03737 Aldolase/RraA JJJ22_04605 PF00571 CBS domain JJJ22_04605 PF01769 Divalent cation transporter JJJ22_04605 PF03448 MgtE intracellular N domain JJJ22_04610 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JJJ22_04610 PF14824 Sirohaem biosynthesis protein central JJJ22_04610 PF10414 Sirohaem synthase dimerisation region JJJ22_04615 PF01226 Formate/nitrite transporter JJJ22_04620 PF13806 Rieske-like [2Fe-2S] domain JJJ22_04625 PF18267 Rubredoxin NAD+ reductase C-terminal domain JJJ22_04625 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JJJ22_04625 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JJJ22_04625 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJJ22_04625 PF04324 BFD-like [2Fe-2S] binding domain JJJ22_04640 PF00005 ABC transporter JJJ22_04645 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JJJ22_04665 PF07724 AAA domain (Cdc48 subfamily) JJJ22_04665 PF00004 ATPase family associated with various cellular activities (AAA) JJJ22_04665 PF10431 C-terminal, D2-small domain, of ClpB protein JJJ22_04670 PF00227 Proteasome subunit JJJ22_04680 PF03485 Arginyl tRNA synthetase N terminal domain JJJ22_04680 PF00750 tRNA synthetases class I (R) JJJ22_04680 PF05746 DALR anticodon binding domain JJJ22_04690 PF04545 Sigma-70, region 4 JJJ22_04690 PF04542 Sigma-70 region 2 JJJ22_04695 PF12973 ChrR Cupin-like domain JJJ22_04700 PF02673 Bacitracin resistance protein BacA JJJ22_04705 PF00248 Aldo/keto reductase family JJJ22_04710 PF01263 Aldose 1-epimerase JJJ22_04715 PF10509 Galactokinase galactose-binding signature JJJ22_04715 PF08544 GHMP kinases C terminal JJJ22_04715 PF00288 GHMP kinases N terminal domain JJJ22_04720 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain JJJ22_04720 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain JJJ22_04725 PF16363 GDP-mannose 4,6 dehydratase JJJ22_04730 PF00356 Bacterial regulatory proteins, lacI family JJJ22_04735 PF00703 Glycosyl hydrolases family 2 JJJ22_04735 PF02837 Glycosyl hydrolases family 2, sugar binding domain JJJ22_04735 PF16353 Domain of unknown function(DUF4981) JJJ22_04735 PF02929 Beta galactosidase small chain JJJ22_04735 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JJJ22_04740 PF13407 Periplasmic binding protein domain JJJ22_04745 PF00005 ABC transporter JJJ22_04750 PF02653 Branched-chain amino acid transport system / permease component JJJ22_04755 PF02743 Cache domain JJJ22_04755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJJ22_04755 PF00672 HAMP domain JJJ22_04770 PF00696 Amino acid kinase family JJJ22_04775 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JJJ22_04775 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JJJ22_04780 PF03606 C4-dicarboxylate anaerobic carrier JJJ22_04785 PF01316 Arginine repressor, DNA binding domain JJJ22_04785 PF02863 Arginine repressor, C-terminal domain JJJ22_04790 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain JJJ22_04790 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain JJJ22_04795 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JJJ22_04795 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JJJ22_04820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJJ22_04820 PF00672 HAMP domain JJJ22_04820 PF02743 Cache domain JJJ22_04830 PF08212 Lipocalin-like domain JJJ22_04835 PF12833 Helix-turn-helix domain JJJ22_04835 PF06719 AraC-type transcriptional regulator N-terminus JJJ22_04840 PF00465 Iron-containing alcohol dehydrogenase JJJ22_04845 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JJJ22_04845 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JJJ22_04845 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch JJJ22_04850 PF02233 NAD(P) transhydrogenase beta subunit JJJ22_04855 PF08348 YheO-like PAS domain JJJ22_04855 PF13309 HTH domain JJJ22_04860 PF03313 Serine dehydratase alpha chain JJJ22_04865 PF13525 Outer membrane lipoprotein JJJ22_04870 PF00849 RNA pseudouridylate synthase JJJ22_04870 PF01479 S4 domain JJJ22_04875 PF02578 Multi-copper polyphenol oxidoreductase laccase JJJ22_04880 PF00004 ATPase family associated with various cellular activities (AAA) JJJ22_04880 PF10431 C-terminal, D2-small domain, of ClpB protein JJJ22_04880 PF07724 AAA domain (Cdc48 subfamily) JJJ22_04880 PF17871 AAA lid domain JJJ22_04880 PF02861 Clp amino terminal domain, pathogenicity island component JJJ22_04885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_04885 PF03466 LysR substrate binding domain JJJ22_04900 PF03590 Aspartate-ammonia ligase JJJ22_04905 PF01037 Lrp/AsnC ligand binding domain JJJ22_04935 PF00512 His Kinase A (phospho-acceptor) domain JJJ22_04935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_04945 PF00072 Response regulator receiver domain JJJ22_04945 PF00158 Sigma-54 interaction domain JJJ22_04950 PF06496 Protein of unknown function (DUF1097) JJJ22_04955 PF00174 Oxidoreductase molybdopterin binding domain JJJ22_04960 PF01794 Ferric reductase like transmembrane component JJJ22_04975 PF00486 Transcriptional regulatory protein, C terminal JJJ22_04975 PF00072 Response regulator receiver domain JJJ22_04980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_04990 PF00384 Molybdopterin oxidoreductase JJJ22_04990 PF18364 Molybdopterin oxidoreductase N-terminal domain JJJ22_04990 PF01568 Molydopterin dinucleotide binding domain JJJ22_04995 PF03264 NapC/NirT cytochrome c family, N-terminal region JJJ22_05000 PF01751 Toprim domain JJJ22_05000 PF01131 DNA topoisomerase JJJ22_05005 PF02386 Cation transport protein JJJ22_05010 PF02080 TrkA-C domain JJJ22_05010 PF02254 TrkA-N domain JJJ22_05015 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JJJ22_05015 PF01565 FAD binding domain JJJ22_05020 PF08279 HTH domain JJJ22_05020 PF03099 Biotin/lipoate A/B protein ligase family JJJ22_05020 PF02237 Biotin protein ligase C terminal domain JJJ22_05025 PF00485 Phosphoribulokinase / Uridine kinase family JJJ22_05040 PF00009 Elongation factor Tu GTP binding domain JJJ22_05040 PF03144 Elongation factor Tu domain 2 JJJ22_05040 PF03143 Elongation factor Tu C-terminal domain JJJ22_05050 PF00584 SecE/Sec61-gamma subunits of protein translocation complex JJJ22_05055 PF02357 Transcription termination factor nusG JJJ22_05055 PF00467 KOW motif JJJ22_05060 PF00298 Ribosomal protein L11, RNA binding domain JJJ22_05060 PF03946 Ribosomal protein L11, N-terminal domain JJJ22_05065 PF00687 Ribosomal protein L1p/L10e family JJJ22_05070 PF00466 Ribosomal protein L10 JJJ22_05075 PF16320 Ribosomal protein L7/L12 dimerisation domain JJJ22_05075 PF00542 Ribosomal protein L7/L12 C-terminal domain JJJ22_05080 PF10385 RNA polymerase beta subunit external 1 domain JJJ22_05080 PF04563 RNA polymerase beta subunit JJJ22_05080 PF04565 RNA polymerase Rpb2, domain 3 JJJ22_05080 PF00562 RNA polymerase Rpb2, domain 6 JJJ22_05080 PF04560 RNA polymerase Rpb2, domain 7 JJJ22_05080 PF04561 RNA polymerase Rpb2, domain 2 JJJ22_05085 PF04997 RNA polymerase Rpb1, domain 1 JJJ22_05085 PF00623 RNA polymerase Rpb1, domain 2 JJJ22_05085 PF04983 RNA polymerase Rpb1, domain 3 JJJ22_05085 PF05000 RNA polymerase Rpb1, domain 4 JJJ22_05085 PF04998 RNA polymerase Rpb1, domain 5 JJJ22_05090 PF13309 HTH domain JJJ22_05090 PF08348 YheO-like PAS domain JJJ22_05095 PF01042 Endoribonuclease L-PSP JJJ22_05100 PF02635 DsrE/DsrF-like family JJJ22_05105 PF02635 DsrE/DsrF-like family JJJ22_05110 PF04077 DsrH like protein JJJ22_05115 PF00164 Ribosomal protein S12/S23 JJJ22_05120 PF00177 Ribosomal protein S7p/S5e JJJ22_05125 PF00679 Elongation factor G C-terminus JJJ22_05125 PF14492 Elongation Factor G, domain II JJJ22_05125 PF03764 Elongation factor G, domain IV JJJ22_05125 PF00009 Elongation factor Tu GTP binding domain JJJ22_05125 PF03144 Elongation factor Tu domain 2 JJJ22_05130 PF00009 Elongation factor Tu GTP binding domain JJJ22_05130 PF03144 Elongation factor Tu domain 2 JJJ22_05130 PF03143 Elongation factor Tu C-terminal domain JJJ22_05175 PF02254 TrkA-N domain JJJ22_05175 PF00999 Sodium/hydrogen exchanger family JJJ22_05180 PF02525 Flavodoxin-like fold JJJ22_05185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_05185 PF03466 LysR substrate binding domain JJJ22_05190 PF00106 short chain dehydrogenase JJJ22_05205 PF00326 Prolyl oligopeptidase family JJJ22_05205 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JJJ22_05210 PF16868 NMT1-like family JJJ22_05225 PF07947 YhhN family JJJ22_05230 PF07690 Major Facilitator Superfamily JJJ22_05235 PF13533 Biotin-lipoyl like JJJ22_05240 PF03466 LysR substrate binding domain JJJ22_05240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_05250 PF00375 Sodium:dicarboxylate symporter family JJJ22_05255 PF10678 Protein of unknown function (DUF2492) JJJ22_05260 PF01914 MarC family integral membrane protein JJJ22_05265 PF03466 LysR substrate binding domain JJJ22_05265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_05270 PF02416 mttA/Hcf106 family JJJ22_05280 PF00497 Bacterial extracellular solute-binding proteins, family 3 JJJ22_05280 PF01464 Transglycosylase SLT domain JJJ22_05290 PF13091 PLD-like domain JJJ22_05300 PF00440 Bacterial regulatory proteins, tetR family JJJ22_05305 PF07226 Protein of unknown function (DUF1422) JJJ22_05320 PF02881 SRP54-type protein, helical bundle domain JJJ22_05320 PF00448 SRP54-type protein, GTPase domain JJJ22_05325 PF00005 ABC transporter JJJ22_05330 PF18075 FtsX extracellular domain JJJ22_05335 PF04542 Sigma-70 region 2 JJJ22_05335 PF00140 Sigma-70 factor, region 1.2 JJJ22_05335 PF04545 Sigma-70, region 4 JJJ22_05340 PF00484 Carbonic anhydrase JJJ22_05345 PF00392 Bacterial regulatory proteins, gntR family JJJ22_05345 PF07702 UTRA domain JJJ22_05350 PF01979 Amidohydrolase family JJJ22_05355 PF00491 Arginase family JJJ22_05360 PF01175 Urocanase Rossmann-like domain JJJ22_05360 PF17391 Urocanase N-terminal domain JJJ22_05360 PF17392 Urocanase C-terminal domain JJJ22_05365 PF00221 Aromatic amino acid lyase JJJ22_05370 PF01699 Sodium/calcium exchanger protein JJJ22_05375 PF00563 EAL domain JJJ22_05375 PF12792 CSS motif domain associated with EAL JJJ22_05410 PF03958 Bacterial type II/III secretion system short domain JJJ22_05410 PF00263 Bacterial type II and III secretion system protein JJJ22_05430 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JJJ22_05430 PF00437 Type II/IV secretion system protein JJJ22_05435 PF00482 Type II secretion system (T2SS), protein F JJJ22_05450 PF07963 Prokaryotic N-terminal methylation motif JJJ22_05450 PF00114 Pilin (bacterial filament) JJJ22_05455 PF14245 Type IV pilin PilA JJJ22_05455 PF07963 Prokaryotic N-terminal methylation motif JJJ22_05485 PF04085 rod shape-determining protein MreC JJJ22_05490 PF04093 rod shape-determining protein MreD JJJ22_05495 PF02545 Maf-like protein JJJ22_05500 PF00575 S1 RNA binding domain JJJ22_05500 PF10150 Ribonuclease E/G family JJJ22_05505 PF13116 Protein of unknown function JJJ22_05505 PF13502 AsmA-like C-terminal region JJJ22_05510 PF00795 Carbon-nitrogen hydrolase JJJ22_05515 PF01523 Putative modulator of DNA gyrase JJJ22_05525 PF01914 MarC family integral membrane protein JJJ22_05530 PF07690 Major Facilitator Superfamily JJJ22_05540 PF04228 Putative neutral zinc metallopeptidase JJJ22_05560 PF00999 Sodium/hydrogen exchanger family JJJ22_05565 PF02607 B12 binding domain JJJ22_05565 PF02965 Vitamin B12 dependent methionine synthase, activation domain JJJ22_05565 PF00809 Pterin binding enzyme JJJ22_05565 PF02574 Homocysteine S-methyltransferase JJJ22_05565 PF02310 B12 binding domain JJJ22_05575 PF18030 RimK PreATP-grasp domain JJJ22_05575 PF08443 RimK-like ATP-grasp domain JJJ22_05580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_05585 PF00072 Response regulator receiver domain JJJ22_05585 PF00486 Transcriptional regulatory protein, C terminal JJJ22_05600 PF13667 ThiC-associated domain JJJ22_05600 PF01964 Radical SAM ThiC family JJJ22_05605 PF02581 Thiamine monophosphate synthase JJJ22_05610 PF00899 ThiF family JJJ22_05620 PF05690 Thiazole biosynthesis protein ThiG JJJ22_05625 PF06968 Biotin and Thiamin Synthesis associated domain JJJ22_05625 PF04055 Radical SAM superfamily JJJ22_05630 PF04363 Protein of unknown function (DUF496) JJJ22_05640 PF04751 Protein of unknown function (DUF615) JJJ22_05645 PF01523 Putative modulator of DNA gyrase JJJ22_05650 PF07719 Tetratricopeptide repeat JJJ22_05650 PF07219 HemY protein N-terminus JJJ22_05655 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase JJJ22_05660 PF02602 Uroporphyrinogen-III synthase HemD JJJ22_05665 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain JJJ22_05665 PF03900 Porphobilinogen deaminase, C-terminal domain JJJ22_05670 PF12633 Adenylate cyclase NT domain JJJ22_05670 PF01295 Adenylate cyclase, class-I JJJ22_05675 PF02230 Phospholipase/Carboxylesterase JJJ22_05680 PF01491 Frataxin-like domain JJJ22_05690 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JJJ22_05690 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JJJ22_05695 PF01678 Diaminopimelate epimerase JJJ22_05705 PF00589 Phage integrase family JJJ22_05705 PF02899 Phage integrase, N-terminal SAM-like domain JJJ22_05710 PF13419 Haloacid dehalogenase-like hydrolase JJJ22_05720 PF07722 Peptidase C26 JJJ22_05735 PF04307 LexA-binding, inner membrane-associated putative hydrolase JJJ22_05740 PF00994 Probable molybdopterin binding domain JJJ22_05740 PF02464 Competence-damaged protein JJJ22_05745 PF01966 HD domain JJJ22_05745 PF00013 KH domain JJJ22_05745 PF12072 Domain of unknown function (DUF3552) JJJ22_05750 PF04204 Homoserine O-succinyltransferase JJJ22_05760 PF01037 Lrp/AsnC ligand binding domain JJJ22_05770 PF00884 Sulfatase JJJ22_05780 PF16657 Maltogenic Amylase, C-terminal domain JJJ22_05780 PF02903 Alpha amylase, N-terminal ig-like domain JJJ22_05780 PF00128 Alpha amylase, catalytic domain JJJ22_05785 PF02308 MgtC family JJJ22_05805 PF00106 short chain dehydrogenase JJJ22_05820 PF00465 Iron-containing alcohol dehydrogenase JJJ22_05830 PF01053 Cys/Met metabolism PLP-dependent enzyme JJJ22_05840 PF12793 Sugar transport-related sRNA regulator N-term JJJ22_05840 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJJ22_05860 PF00561 alpha/beta hydrolase fold JJJ22_05870 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JJJ22_05870 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JJJ22_05875 PF02698 DUF218 domain JJJ22_05880 PF08453 Peptidase family M9 N-terminal JJJ22_05880 PF01752 Collagenase JJJ22_05885 PF13193 AMP-binding enzyme C-terminal domain JJJ22_05885 PF00501 AMP-binding enzyme JJJ22_05890 PF13378 Enolase C-terminal domain-like JJJ22_05895 PF00378 Enoyl-CoA hydratase/isomerase JJJ22_05900 PF12697 Alpha/beta hydrolase family JJJ22_05905 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JJJ22_05905 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JJJ22_05905 PF16582 Middle domain of thiamine pyrophosphate JJJ22_05910 PF00425 chorismate binding enzyme JJJ22_05915 PF01040 UbiA prenyltransferase family JJJ22_05935 PF00271 Helicase conserved C-terminal domain JJJ22_05935 PF00270 DEAD/DEAH box helicase JJJ22_05935 PF03880 DbpA RNA binding domain JJJ22_05940 PF07670 Nucleoside recognition JJJ22_05940 PF07662 Na+ dependent nucleoside transporter C-terminus JJJ22_05940 PF01773 Na+ dependent nucleoside transporter N-terminus JJJ22_05955 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 JJJ22_05960 PF01544 CorA-like Mg2+ transporter protein JJJ22_05975 PF02080 TrkA-C domain JJJ22_05975 PF03471 Transporter associated domain JJJ22_05975 PF00999 Sodium/hydrogen exchanger family JJJ22_05980 PF05068 Mannitol repressor JJJ22_05985 PF01232 Mannitol dehydrogenase Rossmann domain JJJ22_05985 PF08125 Mannitol dehydrogenase C-terminal domain JJJ22_05990 PF02378 Phosphotransferase system, EIIC JJJ22_05990 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JJJ22_05990 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JJJ22_05995 PF00773 RNB domain JJJ22_05995 PF08206 Ribonuclease B OB domain JJJ22_05995 PF17876 Cold shock domain JJJ22_06000 PF03466 LysR substrate binding domain JJJ22_06000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_06005 PF00765 Autoinducer synthase JJJ22_06010 PF03472 Autoinducer binding domain JJJ22_06010 PF00196 Bacterial regulatory proteins, luxR family JJJ22_06015 PF01810 LysE type translocator JJJ22_06020 PF02872 5'-nucleotidase, C-terminal domain JJJ22_06020 PF00149 Calcineurin-like phosphoesterase JJJ22_06025 PF03279 Bacterial lipid A biosynthesis acyltransferase JJJ22_06030 PF00294 pfkB family carbohydrate kinase JJJ22_06030 PF01467 Cytidylyltransferase-like JJJ22_06035 PF02321 Outer membrane efflux protein JJJ22_06040 PF00293 NUDIX domain JJJ22_06045 PF06853 Protein of unknown function (DUF1249) JJJ22_06050 PF00149 Calcineurin-like phosphoesterase JJJ22_06055 PF05728 Uncharacterised protein family (UPF0227) JJJ22_06060 PF00293 NUDIX domain JJJ22_06070 PF07869 Protein of unknown function (DUF1656) JJJ22_06075 PF00529 HlyD membrane-fusion protein of T1SS JJJ22_06075 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JJJ22_06080 PF04632 Fusaric acid resistance protein family JJJ22_06085 PF01751 Toprim domain JJJ22_06085 PF00986 DNA gyrase B subunit, carboxyl terminus JJJ22_06085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_06085 PF00204 DNA gyrase B JJJ22_06090 PF03989 DNA gyrase C-terminal domain, beta-propeller JJJ22_06090 PF00521 DNA gyrase/topoisomerase IV, subunit A JJJ22_06100 PF03989 DNA gyrase C-terminal domain, beta-propeller JJJ22_06100 PF00521 DNA gyrase/topoisomerase IV, subunit A JJJ22_06140 PF01556 DnaJ C terminal domain JJJ22_06140 PF00684 DnaJ central domain JJJ22_06140 PF00226 DnaJ domain JJJ22_06150 PF00578 AhpC/TSA family JJJ22_06170 PF01553 Acyltransferase JJJ22_06175 PF04012 PspA/IM30 family JJJ22_06190 PF01541 GIY-YIG catalytic domain JJJ22_06195 PF00892 EamA-like transporter family JJJ22_06200 PF03167 Uracil DNA glycosylase superfamily JJJ22_06210 PF03466 LysR substrate binding domain JJJ22_06210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_06215 PF00950 ABC 3 transport family JJJ22_06220 PF00005 ABC transporter JJJ22_06225 PF01297 Zinc-uptake complex component A periplasmic JJJ22_06245 PF01476 LysM domain JJJ22_06245 PF08525 Opacity-associated protein A N-terminal motif JJJ22_06245 PF01551 Peptidase family M23 JJJ22_06250 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JJJ22_06255 PF04222 Protein of unknown function (DUF416) JJJ22_06280 PF00892 EamA-like transporter family JJJ22_06285 PF01037 Lrp/AsnC ligand binding domain JJJ22_06290 PF12464 Maltose acetyltransferase JJJ22_06290 PF14602 Hexapeptide repeat of succinyl-transferase JJJ22_06295 PF00128 Alpha amylase, catalytic domain JJJ22_06295 PF11941 Domain of unknown function (DUF3459) JJJ22_06300 PF02378 Phosphotransferase system, EIIC JJJ22_06300 PF00367 phosphotransferase system, EIIB JJJ22_06305 PF00356 Bacterial regulatory proteins, lacI family JJJ22_06315 PF01238 Phosphomannose isomerase type I JJJ22_06320 PF02378 Phosphotransferase system, EIIC JJJ22_06325 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JJJ22_06330 PF02378 Phosphotransferase system, EIIC JJJ22_06335 PF00232 Glycosyl hydrolase family 1 JJJ22_06340 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit JJJ22_06345 PF00480 ROK family JJJ22_06350 PF02264 LamB porin JJJ22_06360 PF13199 Glycosyl hydrolase family 66 JJJ22_06360 PF03422 Carbohydrate binding module (family 6) JJJ22_06360 PF16990 Carbohydrate binding module (family 35) JJJ22_06365 PF00150 Cellulase (glycosyl hydrolase family 5) JJJ22_06365 PF02013 Cellulose or protein binding domain JJJ22_06370 PF00356 Bacterial regulatory proteins, lacI family JJJ22_06380 PF00710 Asparaginase, N-terminal JJJ22_06380 PF17763 Glutaminase/Asparaginase C-terminal domain JJJ22_06395 PF02142 MGS-like domain JJJ22_06400 PF00210 Ferritin-like domain JJJ22_06415 PF13718 GNAT acetyltransferase 2 JJJ22_06415 PF05127 Helicase JJJ22_06415 PF08351 Domain of unknown function (DUF1726) JJJ22_06415 PF17176 tRNA-binding domain JJJ22_06420 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JJJ22_06420 PF02790 Cytochrome C oxidase subunit II, transmembrane domain JJJ22_06425 PF00115 Cytochrome C and Quinol oxidase polypeptide I JJJ22_06430 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 JJJ22_06435 PF00510 Cytochrome c oxidase subunit III JJJ22_06460 PF01040 UbiA prenyltransferase family JJJ22_06470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_06470 PF03466 LysR substrate binding domain JJJ22_06475 PF03553 Na+/H+ antiporter family JJJ22_06515 PF00132 Bacterial transferase hexapeptide (six repeats) JJJ22_06520 PF13036 Peptidoglycan-synthase activator LpoB JJJ22_06525 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_06530 PF06055 Exopolysaccharide synthesis, ExoD JJJ22_06545 PF08803 Putative mono-oxygenase ydhR JJJ22_06550 PF01638 HxlR-like helix-turn-helix JJJ22_06560 PF00593 TonB dependent receptor JJJ22_06560 PF07715 TonB-dependent Receptor Plug Domain JJJ22_06565 PF00583 Acetyltransferase (GNAT) family JJJ22_06565 PF13508 Acetyltransferase (GNAT) domain JJJ22_06570 PF08241 Methyltransferase domain JJJ22_06580 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded JJJ22_06585 PF03692 Putative zinc- or iron-chelating domain JJJ22_06590 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JJJ22_06595 PF01722 BolA-like protein JJJ22_06605 PF05494 MlaC protein JJJ22_06610 PF02470 MlaD protein JJJ22_06615 PF02405 Permease MlaE JJJ22_06620 PF00005 ABC transporter JJJ22_06625 PF00571 CBS domain JJJ22_06625 PF01380 SIS domain JJJ22_06640 PF03968 OstA-like protein JJJ22_06645 PF12399 Branched-chain amino acid ATP-binding cassette transporter JJJ22_06645 PF00005 ABC transporter JJJ22_06650 PF04552 Sigma-54, DNA binding domain JJJ22_06650 PF04963 Sigma-54 factor, core binding domain JJJ22_06650 PF00309 Sigma-54 factor, Activator interacting domain (AID) JJJ22_06655 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JJJ22_06660 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JJJ22_06665 PF03668 P-loop ATPase protein family JJJ22_06670 PF00381 PTS HPr component phosphorylation site JJJ22_06675 PF02378 Phosphotransferase system, EIIC JJJ22_06675 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JJJ22_06675 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JJJ22_06680 PF07071 KDGP aldolase JJJ22_06685 PF03841 L-seryl-tRNA selenium transferase JJJ22_06690 PF01979 Amidohydrolase family JJJ22_06720 PF13180 PDZ domain JJJ22_06725 PF00595 PDZ domain JJJ22_06725 PF13180 PDZ domain JJJ22_06735 PF03969 AFG1-like ATPase JJJ22_06740 PF00572 Ribosomal protein L13 JJJ22_06745 PF00380 Ribosomal protein S9/S16 JJJ22_06750 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal JJJ22_06750 PF00355 Rieske [2Fe-2S] domain JJJ22_06755 PF00033 Cytochrome b/b6/petB JJJ22_06755 PF00032 Cytochrome b(C-terminal)/b6/petD JJJ22_06760 PF02167 Cytochrome C1 family JJJ22_06765 PF02798 Glutathione S-transferase, N-terminal domain JJJ22_06765 PF00043 Glutathione S-transferase, C-terminal domain JJJ22_06770 PF04386 Stringent starvation protein B JJJ22_06775 PF04972 BON domain JJJ22_06780 PF13580 SIS domain JJJ22_06785 PF02021 Uncharacterised protein family UPF0102 JJJ22_06790 PF04348 LppC putative lipoprotein JJJ22_06795 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JJJ22_06805 PF02381 MraZ protein, putative antitoxin-like JJJ22_06810 PF01795 MraW methylase family JJJ22_06815 PF04999 Cell division protein FtsL JJJ22_06820 PF03717 Penicillin-binding Protein dimerisation domain JJJ22_06820 PF00905 Penicillin binding protein transpeptidase domain JJJ22_06825 PF01225 Mur ligase family, catalytic domain JJJ22_06825 PF08245 Mur ligase middle domain JJJ22_06825 PF02875 Mur ligase family, glutamate ligase domain JJJ22_06830 PF01225 Mur ligase family, catalytic domain JJJ22_06830 PF08245 Mur ligase middle domain JJJ22_06830 PF02875 Mur ligase family, glutamate ligase domain JJJ22_06835 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 JJJ22_06835 PF00953 Glycosyl transferase family 4 JJJ22_06840 PF08245 Mur ligase middle domain JJJ22_06840 PF02875 Mur ligase family, glutamate ligase domain JJJ22_06845 PF01098 Cell cycle protein JJJ22_06850 PF03033 Glycosyltransferase family 28 N-terminal domain JJJ22_06850 PF04101 Glycosyltransferase family 28 C-terminal domain JJJ22_06855 PF02875 Mur ligase family, glutamate ligase domain JJJ22_06855 PF01225 Mur ligase family, catalytic domain JJJ22_06855 PF08245 Mur ligase middle domain JJJ22_06860 PF08478 POTRA domain, FtsQ-type JJJ22_06860 PF03799 Cell division protein FtsQ JJJ22_06865 PF02491 SHS2 domain inserted in FTSA JJJ22_06870 PF00091 Tubulin/FtsZ family, GTPase domain JJJ22_06870 PF12327 FtsZ family, C-terminal domain JJJ22_06875 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase JJJ22_06885 PF02810 SEC-C motif JJJ22_06885 PF07517 SecA DEAD-like domain JJJ22_06885 PF01043 SecA preprotein cross-linking domain JJJ22_06885 PF07516 SecA Wing and Scaffold domain JJJ22_06895 PF00293 NUDIX domain JJJ22_06900 PF03884 DNA gyrase inhibitor YacG JJJ22_06905 PF07072 Cell division protein JJJ22_06910 PF01121 Dephospho-CoA kinase JJJ22_06915 PF06750 Bacterial Peptidase A24 N-terminal domain JJJ22_06915 PF01478 Type IV leader peptidase family JJJ22_06920 PF00482 Type II secretion system (T2SS), protein F JJJ22_06925 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JJJ22_06925 PF00437 Type II/IV secretion system protein JJJ22_06930 PF07963 Prokaryotic N-terminal methylation motif JJJ22_06935 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain JJJ22_06935 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain JJJ22_06945 PF01510 N-acetylmuramoyl-L-alanine amidase JJJ22_06950 PF00392 Bacterial regulatory proteins, gntR family JJJ22_06950 PF07729 FCD domain JJJ22_06955 PF17831 Pyruvate dehydrogenase E1 component middle domain JJJ22_06955 PF00456 Transketolase, thiamine diphosphate binding domain JJJ22_06960 PF02817 e3 binding domain JJJ22_06960 PF00364 Biotin-requiring enzyme JJJ22_06960 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JJJ22_06965 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJJ22_06965 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JJJ22_06975 PF12729 Four helix bundle sensory module for signal transduction JJJ22_06975 PF00672 HAMP domain JJJ22_06975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJJ22_06980 PF01734 Patatin-like phospholipase JJJ22_06985 PF00330 Aconitase family (aconitate hydratase) JJJ22_06985 PF06434 Aconitate hydratase 2 N-terminus JJJ22_06985 PF11791 Aconitate B N-terminal domain JJJ22_06990 PF12792 CSS motif domain associated with EAL JJJ22_06990 PF00563 EAL domain JJJ22_06995 PF03466 LysR substrate binding domain JJJ22_06995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_07000 PF01810 LysE type translocator JJJ22_07005 PF04030 D-arabinono-1,4-lactone oxidase JJJ22_07005 PF01565 FAD binding domain JJJ22_07010 PF07683 Cobalamin synthesis protein cobW C-terminal domain JJJ22_07010 PF02492 CobW/HypB/UreG, nucleotide-binding domain JJJ22_07015 PF07690 Major Facilitator Superfamily JJJ22_07025 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JJJ22_07030 PF02152 Dihydroneopterin aldolase JJJ22_07035 PF02660 Glycerol-3-phosphate acyltransferase JJJ22_07075 PF02028 BCCT, betaine/carnitine/choline family transporter JJJ22_07080 PF00488 MutS domain V JJJ22_07080 PF01624 MutS domain I JJJ22_07080 PF05188 MutS domain II JJJ22_07080 PF05190 MutS family domain IV JJJ22_07080 PF05192 MutS domain III JJJ22_07090 PF02464 Competence-damaged protein JJJ22_07095 PF00154 recA bacterial DNA recombination protein JJJ22_07100 PF02631 RecX family JJJ22_07110 PF01411 tRNA synthetases class II (A) JJJ22_07110 PF02272 DHHA1 domain JJJ22_07110 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JJJ22_07115 PF01842 ACT domain JJJ22_07115 PF13840 ACT domain JJJ22_07115 PF00696 Amino acid kinase family JJJ22_07120 PF02599 Global regulator protein family JJJ22_07155 PF00768 D-alanyl-D-alanine carboxypeptidase JJJ22_07160 PF09335 SNARE associated Golgi protein JJJ22_07165 PF00571 CBS domain JJJ22_07165 PF03471 Transporter associated domain JJJ22_07165 PF01595 Cyclin M transmembrane N-terminal domain JJJ22_07170 PF10458 Valyl tRNA synthetase tRNA binding arm JJJ22_07170 PF00133 tRNA synthetases class I (I, L, M and V) JJJ22_07170 PF08264 Anticodon-binding domain of tRNA JJJ22_07180 PF00883 Cytosol aminopeptidase family, catalytic domain JJJ22_07180 PF02789 Cytosol aminopeptidase family, N-terminal domain JJJ22_07185 PF03739 Lipopolysaccharide export system permease LptF/LptG JJJ22_07190 PF03739 Lipopolysaccharide export system permease LptF/LptG JJJ22_07255 PF00909 Ammonium Transporter Family JJJ22_07260 PF01938 TRAM domain JJJ22_07260 PF05958 tRNA (Uracil-5-)-methyltransferase JJJ22_07275 PF07963 Prokaryotic N-terminal methylation motif JJJ22_07280 PF01026 TatD related DNase JJJ22_07285 PF07670 Nucleoside recognition JJJ22_07285 PF07662 Na+ dependent nucleoside transporter C-terminus JJJ22_07285 PF01773 Na+ dependent nucleoside transporter N-terminus JJJ22_07295 PF01791 DeoC/LacD family aldolase JJJ22_07300 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain JJJ22_07300 PF00591 Glycosyl transferase family, a/b domain JJJ22_07300 PF02885 Glycosyl transferase family, helical bundle domain JJJ22_07305 PF01676 Metalloenzyme superfamily JJJ22_07310 PF01048 Phosphorylase superfamily JJJ22_07315 PF00563 EAL domain JJJ22_07315 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_07315 PF05231 MASE1 JJJ22_07315 PF08447 PAS fold JJJ22_07315 PF13426 PAS domain JJJ22_07315 PF08448 PAS fold JJJ22_07325 PF18429 Domain of unknown function (DUF5609) JJJ22_07340 PF18073 Rubredoxin metal binding domain JJJ22_07345 PF07238 PilZ domain JJJ22_07350 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ JJJ22_07355 PF00216 Bacterial DNA-binding protein JJJ22_07370 PF01207 Dihydrouridine synthase (Dus) JJJ22_07375 PF01475 Ferric uptake regulator family JJJ22_07390 PF05525 Branched-chain amino acid transport protein JJJ22_07395 PF05175 Methyltransferase small domain JJJ22_07400 PF00271 Helicase conserved C-terminal domain JJJ22_07400 PF00270 DEAD/DEAH box helicase JJJ22_07405 PF03883 Peroxide stress protein YaaA JJJ22_07410 PF00437 Type II/IV secretion system protein JJJ22_07415 PF00437 Type II/IV secretion system protein JJJ22_07420 PF01168 Alanine racemase, N-terminal domain JJJ22_07425 PF14748 Pyrroline-5-carboxylate reductase dimerisation JJJ22_07425 PF03807 NADP oxidoreductase coenzyme F420-dependent JJJ22_07430 PF02325 YGGT family JJJ22_07435 PF02594 Uncharacterised ACR, YggU family COG1872 JJJ22_07455 PF06062 Uncharacterised protein family (UPF0231) JJJ22_07460 PF05651 Putative sugar diacid recognition JJJ22_07460 PF13556 PucR C-terminal helix-turn-helix domain JJJ22_07460 PF17853 GGDEF-like domain JJJ22_07465 PF02447 GntP family permease JJJ22_07470 PF02595 Glycerate kinase family JJJ22_07480 PF00255 Glutathione peroxidase JJJ22_07485 PF03466 LysR substrate binding domain JJJ22_07485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_07490 PF07662 Na+ dependent nucleoside transporter C-terminus JJJ22_07490 PF01773 Na+ dependent nucleoside transporter N-terminus JJJ22_07490 PF07670 Nucleoside recognition JJJ22_07495 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JJJ22_07495 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JJJ22_07500 PF00472 RF-1 domain JJJ22_07505 PF00543 Nitrogen regulatory protein P-II JJJ22_07520 PF00005 ABC transporter JJJ22_07520 PF08402 TOBE domain JJJ22_07525 PF04261 Dyp-type peroxidase family JJJ22_07530 PF02863 Arginine repressor, C-terminal domain JJJ22_07530 PF01316 Arginine repressor, DNA binding domain JJJ22_07535 PF00005 ABC transporter JJJ22_07540 PF00497 Bacterial extracellular solute-binding proteins, family 3 JJJ22_07545 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_07550 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_07555 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JJJ22_07555 PF00056 lactate/malate dehydrogenase, NAD binding domain JJJ22_07560 PF08238 Sel1 repeat JJJ22_07565 PF00175 Oxidoreductase NAD-binding domain JJJ22_07565 PF00042 Globin JJJ22_07565 PF00970 Oxidoreductase FAD-binding domain JJJ22_07570 PF02082 Transcriptional regulator JJJ22_07575 PF03471 Transporter associated domain JJJ22_07575 PF00571 CBS domain JJJ22_07575 PF01595 Cyclin M transmembrane N-terminal domain JJJ22_07580 PF01578 Cytochrome C assembly protein JJJ22_07585 PF02978 Signal peptide binding domain JJJ22_07585 PF00448 SRP54-type protein, GTPase domain JJJ22_07585 PF02881 SRP54-type protein, helical bundle domain JJJ22_07590 PF00886 Ribosomal protein S16 JJJ22_07595 PF05239 PRC-barrel domain JJJ22_07595 PF01782 RimM N-terminal domain JJJ22_07600 PF01746 tRNA (Guanine-1)-methyltransferase JJJ22_07605 PF01245 Ribosomal protein L19 JJJ22_07615 PF02976 DNA mismatch repair enzyme MutH JJJ22_07620 PF00293 NUDIX domain JJJ22_07625 PF01590 GAF domain JJJ22_07625 PF05524 PEP-utilising enzyme, N-terminal JJJ22_07625 PF02896 PEP-utilising enzyme, TIM barrel domain JJJ22_07625 PF00391 PEP-utilising enzyme, mobile domain JJJ22_07630 PF01790 Prolipoprotein diacylglyceryl transferase JJJ22_07635 PF00303 Thymidylate synthase JJJ22_07640 PF06965 Na+/H+ antiporter 1 JJJ22_07650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_07650 PF03466 LysR substrate binding domain JJJ22_07655 PF01022 Bacterial regulatory protein, arsR family JJJ22_07660 PF01649 Ribosomal protein S20 JJJ22_07665 PF03023 Lipid II flippase MurJ JJJ22_07670 PF06574 FAD synthetase JJJ22_07670 PF01687 Riboflavin kinase JJJ22_07675 PF08264 Anticodon-binding domain of tRNA JJJ22_07675 PF06827 Zinc finger found in FPG and IleRS JJJ22_07675 PF00133 tRNA synthetases class I (I, L, M and V) JJJ22_07680 PF01252 Signal peptidase (SPase) II JJJ22_07685 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JJJ22_07690 PF02401 LytB protein JJJ22_07720 PF00795 Carbon-nitrogen hydrolase JJJ22_07720 PF02540 NAD synthase JJJ22_07725 PF00543 Nitrogen regulatory protein P-II JJJ22_07735 PF02664 S-Ribosylhomocysteinase (LuxS) JJJ22_07740 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_07745 PF17876 Cold shock domain JJJ22_07745 PF08461 Ribonuclease R winged-helix domain JJJ22_07745 PF08206 Ribonuclease B OB domain JJJ22_07745 PF00773 RNB domain JJJ22_07745 PF00575 S1 RNA binding domain JJJ22_07750 PF00588 SpoU rRNA Methylase family JJJ22_07750 PF08032 RNA 2'-O ribose methyltransferase substrate binding JJJ22_07765 PF13673 Acetyltransferase (GNAT) domain JJJ22_07770 PF01411 tRNA synthetases class II (A) JJJ22_07770 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JJJ22_07770 PF02272 DHHA1 domain JJJ22_07775 PF01566 Natural resistance-associated macrophage protein JJJ22_07780 PF01250 Ribosomal protein S6 JJJ22_07785 PF01084 Ribosomal protein S18 JJJ22_07790 PF03948 Ribosomal protein L9, C-terminal domain JJJ22_07790 PF01281 Ribosomal protein L9, N-terminal domain JJJ22_07795 PF00175 Oxidoreductase NAD-binding domain JJJ22_07795 PF00970 Oxidoreductase FAD-binding domain JJJ22_07820 PF08240 Alcohol dehydrogenase GroES-like domain JJJ22_07820 PF00107 Zinc-binding dehydrogenase JJJ22_07825 PF09335 SNARE associated Golgi protein JJJ22_07830 PF05193 Peptidase M16 inactive domain JJJ22_07830 PF00675 Insulinase (Peptidase family M16) JJJ22_07835 PF04262 Glutamate-cysteine ligase JJJ22_07840 PF03605 Anaerobic c4-dicarboxylate membrane transporter JJJ22_07845 PF00206 Lyase JJJ22_07845 PF10415 Fumarase C C-terminus JJJ22_07850 PF04186 FxsA cytoplasmic membrane protein JJJ22_07855 PF01554 MatE JJJ22_07860 PF00166 Chaperonin 10 Kd subunit JJJ22_07865 PF00118 TCP-1/cpn60 chaperonin family JJJ22_07875 PF00563 EAL domain JJJ22_07875 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_07875 PF03707 Bacterial signalling protein N terminal repeat JJJ22_07885 PF00849 RNA pseudouridylate synthase JJJ22_07890 PF00271 Helicase conserved C-terminal domain JJJ22_07890 PF12137 RNA polymerase recycling family C-terminal JJJ22_07890 PF00176 SNF2 family N-terminal domain JJJ22_07890 PF18339 RapA N-terminal Tudor like domain 1 JJJ22_07890 PF18337 RapA N-terminal Tudor like domain JJJ22_07930 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_07935 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_07940 PF12857 TOBE-like domain JJJ22_07940 PF00005 ABC transporter JJJ22_07945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_07945 PF03466 LysR substrate binding domain JJJ22_07950 PF18416 N-acetylglucosamine binding protein domain 2 JJJ22_07950 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading JJJ22_07955 PF08269 Cache domain JJJ22_07955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJJ22_07980 PF11230 Protein of unknown function (DUF3029) JJJ22_07985 PF04055 Radical SAM superfamily JJJ22_08000 PF00155 Aminotransferase class I and II JJJ22_08005 PF11658 Cellulose biosynthesis protein BcsG JJJ22_08015 PF06564 Cellulose biosynthesis protein BcsQ JJJ22_08020 PF00535 Glycosyl transferase family 2 JJJ22_08020 PF07238 PilZ domain JJJ22_08025 PF03170 Bacterial cellulose synthase subunit JJJ22_08030 PF01270 Glycosyl hydrolases family 8 JJJ22_08035 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) JJJ22_08040 PF02583 Metal-sensitive transcriptional repressor JJJ22_08060 PF00403 Heavy-metal-associated domain JJJ22_08065 PF08534 Redoxin JJJ22_08070 PF00270 DEAD/DEAH box helicase JJJ22_08070 PF00271 Helicase conserved C-terminal domain JJJ22_08085 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJJ22_08095 PF10952 Protein of unknown function (DUF2753) JJJ22_08100 PF00378 Enoyl-CoA hydratase/isomerase JJJ22_08115 PF00106 short chain dehydrogenase JJJ22_08120 PF00929 Exonuclease JJJ22_08125 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JJJ22_08125 PF04073 Aminoacyl-tRNA editing domain JJJ22_08125 PF03129 Anticodon binding domain JJJ22_08130 PF00672 HAMP domain JJJ22_08130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJJ22_08135 PF07499 RuvA, C-terminal domain JJJ22_08135 PF01330 RuvA N terminal domain JJJ22_08140 PF05496 Holliday junction DNA helicase RuvB P-loop domain JJJ22_08140 PF05491 RuvB C-terminal winged helix domain JJJ22_08140 PF17864 RuvB AAA lid domain JJJ22_08150 PF01654 Cytochrome bd terminal oxidase subunit I JJJ22_08155 PF02322 Cytochrome bd terminal oxidase subunit II JJJ22_08160 PF08173 Membrane bound YbgT-like protein JJJ22_08165 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) JJJ22_08170 PF03061 Thioesterase superfamily JJJ22_08175 PF01618 MotA/TolQ/ExbB proton channel family JJJ22_08180 PF02472 Biopolymer transport protein ExbD/TolR JJJ22_08190 PF07676 WD40-like Beta Propeller Repeat JJJ22_08190 PF04052 TolB amino-terminal domain JJJ22_08195 PF00691 OmpA family JJJ22_08200 PF13174 Tetratricopeptide repeat JJJ22_08200 PF16331 TolA binding protein trimerisation JJJ22_08275 PF00672 HAMP domain JJJ22_08275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJJ22_08280 PF02445 Quinolinate synthetase A protein JJJ22_08285 PF01263 Aldose 1-epimerase JJJ22_08290 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JJJ22_08290 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JJJ22_08295 PF02446 4-alpha-glucanotransferase JJJ22_08300 PF00128 Alpha amylase, catalytic domain JJJ22_08300 PF02806 Alpha amylase, C-terminal all-beta domain JJJ22_08300 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JJJ22_08305 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JJJ22_08305 PF00128 Alpha amylase, catalytic domain JJJ22_08310 PF01641 SelR domain JJJ22_08325 PF00293 NUDIX domain JJJ22_08330 PF00107 Zinc-binding dehydrogenase JJJ22_08330 PF16884 N-terminal domain of oxidoreductase JJJ22_08335 PF01047 MarR family JJJ22_08350 PF01037 Lrp/AsnC ligand binding domain JJJ22_08360 PF07690 Major Facilitator Superfamily JJJ22_08380 PF00209 Sodium:neurotransmitter symporter family JJJ22_08385 PF00209 Sodium:neurotransmitter symporter family JJJ22_08400 PF00155 Aminotransferase class I and II JJJ22_08400 PF00392 Bacterial regulatory proteins, gntR family JJJ22_08415 PF01177 Asp/Glu/Hydantoin racemase JJJ22_08425 PF00501 AMP-binding enzyme JJJ22_08435 PF00583 Acetyltransferase (GNAT) family JJJ22_08445 PF07728 AAA domain (dynein-related subfamily) JJJ22_08445 PF17868 AAA lid domain JJJ22_08445 PF12592 Protein of unknown function (DUF3763) JJJ22_08450 PF05762 VWA domain containing CoxE-like protein JJJ22_08455 PF00563 EAL domain JJJ22_08455 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_08455 PF08448 PAS fold JJJ22_08460 PF00072 Response regulator receiver domain JJJ22_08460 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_08465 PF03144 Elongation factor Tu domain 2 JJJ22_08465 PF16658 Class II release factor RF3, C-terminal domain JJJ22_08465 PF00009 Elongation factor Tu GTP binding domain JJJ22_08475 PF00583 Acetyltransferase (GNAT) family JJJ22_08480 PF12804 MobA-like NTP transferase domain JJJ22_08480 PF00132 Bacterial transferase hexapeptide (six repeats) JJJ22_08485 PF00583 Acetyltransferase (GNAT) family JJJ22_08490 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JJJ22_08500 PF03466 LysR substrate binding domain JJJ22_08500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_08505 PF04371 Porphyromonas-type peptidyl-arginine deiminase JJJ22_08510 PF01425 Amidase JJJ22_08515 PF13592 Winged helix-turn helix JJJ22_08515 PF13358 DDE superfamily endonuclease JJJ22_08520 PF01555 DNA methylase JJJ22_08525 PF00753 Metallo-beta-lactamase superfamily JJJ22_08545 PF02311 AraC-like ligand binding domain JJJ22_08545 PF12833 Helix-turn-helix domain JJJ22_08550 PF00970 Oxidoreductase FAD-binding domain JJJ22_08550 PF00111 2Fe-2S iron-sulfur cluster binding domain JJJ22_08550 PF00175 Oxidoreductase NAD-binding domain JJJ22_08555 PF00271 Helicase conserved C-terminal domain JJJ22_08555 PF00270 DEAD/DEAH box helicase JJJ22_08560 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_08565 PF05643 Putative bacterial lipoprotein (DUF799) JJJ22_08575 PF03783 Curli production assembly/transport component CsgG JJJ22_08605 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase JJJ22_08620 PF02687 FtsX-like permease family JJJ22_08620 PF00005 ABC transporter JJJ22_08620 PF12704 MacB-like periplasmic core domain JJJ22_08625 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JJJ22_08630 PF00072 Response regulator receiver domain JJJ22_08630 PF00486 Transcriptional regulatory protein, C terminal JJJ22_08635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_08635 PF16527 Two-component sensor protein CpxA, periplasmic domain JJJ22_08635 PF00512 His Kinase A (phospho-acceptor) domain JJJ22_08635 PF00672 HAMP domain JJJ22_08655 PF00445 Ribonuclease T2 family JJJ22_08660 PF03060 Nitronate monooxygenase JJJ22_08700 PF02562 PhoH-like protein JJJ22_08700 PF13638 PIN domain JJJ22_08710 PF00005 ABC transporter JJJ22_08715 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_08735 PF00694 Aconitase C-terminal domain JJJ22_08740 PF00330 Aconitase family (aconitate hydratase) JJJ22_08745 PF00180 Isocitrate/isopropylmalate dehydrogenase JJJ22_08750 PF08502 LeuA allosteric (dimerisation) domain JJJ22_08750 PF00682 HMGL-like JJJ22_08760 PF01569 PAP2 superfamily JJJ22_08775 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JJJ22_08775 PF00205 Thiamine pyrophosphate enzyme, central domain JJJ22_08775 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JJJ22_08780 PF10369 Small subunit of acetolactate synthase JJJ22_08785 PF07085 DRTGG domain JJJ22_08785 PF01515 Phosphate acetyl/butaryl transferase JJJ22_08790 PF00871 Acetokinase family JJJ22_08795 PF04217 Protein of unknown function, DUF412 JJJ22_08800 PF03887 YfbU domain JJJ22_08805 PF00578 AhpC/TSA family JJJ22_08810 PF01842 ACT domain JJJ22_08815 PF00701 Dihydrodipicolinate synthetase family JJJ22_08820 PF06804 NlpB/DapX lipoprotein JJJ22_08825 PF01259 SAICAR synthetase JJJ22_08835 PF03466 LysR substrate binding domain JJJ22_08835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_08840 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) JJJ22_08860 PF00072 Response regulator receiver domain JJJ22_08860 PF00989 PAS fold JJJ22_08860 PF01627 Hpt domain JJJ22_08860 PF18415 Histidine kinase receptor ArcB trans-membrane domain JJJ22_08860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_08860 PF00512 His Kinase A (phospho-acceptor) domain JJJ22_08865 PF01966 HD domain JJJ22_08875 PF09456 RcsC Alpha-Beta-Loop (ABL) JJJ22_08875 PF00072 Response regulator receiver domain JJJ22_08875 PF00512 His Kinase A (phospho-acceptor) domain JJJ22_08875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_08880 PF03707 Bacterial signalling protein N terminal repeat JJJ22_08880 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_08880 PF00563 EAL domain JJJ22_08885 PF08447 PAS fold JJJ22_08885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJJ22_08885 PF13426 PAS domain JJJ22_08890 PF02357 Transcription termination factor nusG JJJ22_08895 PF03180 NLPA lipoprotein JJJ22_08900 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_08905 PF09383 NIL domain JJJ22_08905 PF00005 ABC transporter JJJ22_08915 PF00480 ROK family JJJ22_08920 PF08331 Domain of unknown function (DUF1730) JJJ22_08925 PF03853 YjeF-related protein N-terminus JJJ22_08925 PF01256 Carbohydrate kinase JJJ22_08930 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JJJ22_08935 PF01520 N-acetylmuramoyl-L-alanine amidase JJJ22_08940 PF01119 DNA mismatch repair protein, C-terminal domain JJJ22_08940 PF08676 MutL C terminal dimerisation domain JJJ22_08950 PF17209 Hfq protein JJJ22_08955 PF16360 GTP-binding GTPase Middle Region JJJ22_08955 PF13167 GTP-binding GTPase N-terminal JJJ22_08955 PF01926 50S ribosome-binding GTPase JJJ22_08960 PF01145 SPFH domain / Band 7 family JJJ22_08960 PF12221 Bacterial membrane protein N terminal JJJ22_08965 PF01145 SPFH domain / Band 7 family JJJ22_08970 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) JJJ22_08975 PF00348 Polyprenyl synthetase JJJ22_08980 PF00829 Ribosomal prokaryotic L21 protein JJJ22_08985 PF01016 Ribosomal L27 protein JJJ22_08990 PF01926 50S ribosome-binding GTPase JJJ22_08990 PF01018 GTP1/OBG JJJ22_08995 PF07670 Nucleoside recognition JJJ22_09005 PF00296 Luciferase-like monooxygenase JJJ22_09015 PF00149 Calcineurin-like phosphoesterase JJJ22_09020 PF04379 ApaG domain JJJ22_09025 PF00398 Ribosomal RNA adenine dimethylase JJJ22_09030 PF04166 Pyridoxal phosphate biosynthetic protein PdxA JJJ22_09035 PF09312 SurA N-terminal domain JJJ22_09035 PF00639 PPIC-type PPIASE domain JJJ22_09040 PF03968 OstA-like protein JJJ22_09040 PF04453 LPS transport system D JJJ22_09045 PF01636 Phosphotransferase enzyme family JJJ22_09050 PF00483 Nucleotidyl transferase JJJ22_09055 PF00226 DnaJ domain JJJ22_09055 PF05099 Tellurite resistance protein TerB JJJ22_09060 PF00860 Permease family JJJ22_09070 PF12848 ABC transporter JJJ22_09070 PF00005 ABC transporter JJJ22_09075 PF01551 Peptidase family M23 JJJ22_09075 PF01464 Transglycosylase SLT domain JJJ22_09075 PF10145 Phage-related minor tail protein JJJ22_09080 PF00535 Glycosyl transferase family 2 JJJ22_09090 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase JJJ22_09095 PF01370 NAD dependent epimerase/dehydratase family JJJ22_09100 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JJJ22_09100 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JJJ22_09100 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JJJ22_09110 PF00005 ABC transporter JJJ22_09115 PF01032 FecCD transport family JJJ22_09125 PF06228 Haem utilisation ChuX/HutX JJJ22_09130 PF01243 Pyridoxamine 5'-phosphate oxidase JJJ22_09150 PF00593 TonB dependent receptor JJJ22_09150 PF07715 TonB-dependent Receptor Plug Domain JJJ22_09155 PF12832 MFS_1 like family JJJ22_09160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_09160 PF00989 PAS fold JJJ22_09160 PF00512 His Kinase A (phospho-acceptor) domain JJJ22_09165 PF00704 Glycosyl hydrolases family 18 JJJ22_09165 PF08329 Chitinase A, N-terminal domain JJJ22_09170 PF13847 Methyltransferase domain JJJ22_09175 PF13545 Crp-like helix-turn-helix domain JJJ22_09175 PF00027 Cyclic nucleotide-binding domain JJJ22_09180 PF02566 OsmC-like protein JJJ22_09195 PF00485 Phosphoribulokinase / Uridine kinase family JJJ22_09200 PF06794 Uncharacterised protein family (UPF0270) JJJ22_09205 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_09205 PF00360 Phytochrome region JJJ22_09205 PF01590 GAF domain JJJ22_09205 PF00563 EAL domain JJJ22_09210 PF00561 alpha/beta hydrolase fold JJJ22_09215 PF01584 CheW-like domain JJJ22_09215 PF00072 Response regulator receiver domain JJJ22_09225 PF09526 Probable metal-binding protein (DUF2387) JJJ22_09230 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JJJ22_09235 PF04102 SlyX JJJ22_09245 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JJJ22_09245 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JJJ22_09250 PF00158 Sigma-54 interaction domain JJJ22_09250 PF00072 Response regulator receiver domain JJJ22_09250 PF02954 Bacterial regulatory protein, Fis family JJJ22_09270 PF02872 5'-nucleotidase, C-terminal domain JJJ22_09270 PF00149 Calcineurin-like phosphoesterase JJJ22_09280 PF00772 DnaB-like helicase N terminal domain JJJ22_09280 PF03796 DnaB-like helicase C terminal domain JJJ22_09285 PF00842 Alanine racemase, C-terminal domain JJJ22_09285 PF01168 Alanine racemase, N-terminal domain JJJ22_09290 PF18327 Proline utilization A proline dehydrogenase N-terminal domain JJJ22_09290 PF00171 Aldehyde dehydrogenase family JJJ22_09290 PF01619 Proline dehydrogenase JJJ22_09290 PF14850 DNA-binding domain of Proline dehydrogenase JJJ22_09300 PF00206 Lyase JJJ22_09300 PF10415 Fumarase C C-terminus JJJ22_09310 PF00529 HlyD membrane-fusion protein of T1SS JJJ22_09310 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JJJ22_09315 PF07690 Major Facilitator Superfamily JJJ22_09320 PF03575 Peptidase family S51 JJJ22_09325 PF00196 Bacterial regulatory proteins, luxR family JJJ22_09325 PF00072 Response regulator receiver domain JJJ22_09330 PF00989 PAS fold JJJ22_09330 PF00512 His Kinase A (phospho-acceptor) domain JJJ22_09330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_09335 PF13247 4Fe-4S dicluster domain JJJ22_09340 PF03916 Polysulphide reductase, NrfD JJJ22_09345 PF00384 Molybdopterin oxidoreductase JJJ22_09345 PF01568 Molydopterin dinucleotide binding domain JJJ22_09345 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JJJ22_09355 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_09355 PF00989 PAS fold JJJ22_09355 PF00563 EAL domain JJJ22_09355 PF01590 GAF domain JJJ22_09380 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JJJ22_09380 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JJJ22_09385 PF03466 LysR substrate binding domain JJJ22_09385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_09390 PF01810 LysE type translocator JJJ22_09395 PF01136 Peptidase family U32 JJJ22_09395 PF12392 Collagenase JJJ22_09405 PF06906 Protein of unknown function (DUF1272) JJJ22_09415 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JJJ22_09415 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JJJ22_09420 PF02805 Metal binding domain of Ada JJJ22_09420 PF06029 AlkA N-terminal domain JJJ22_09420 PF00730 HhH-GPD superfamily base excision DNA repair protein JJJ22_09420 PF12833 Helix-turn-helix domain JJJ22_09425 PF02074 Carboxypeptidase Taq (M32) metallopeptidase JJJ22_09450 PF00106 short chain dehydrogenase JJJ22_09455 PF03573 outer membrane porin, OprD family JJJ22_09460 PF02743 Cache domain JJJ22_09460 PF00672 HAMP domain JJJ22_09460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJJ22_09465 PF00892 EamA-like transporter family JJJ22_09470 PF02447 GntP family permease JJJ22_09475 PF01370 NAD dependent epimerase/dehydratase family JJJ22_09480 PF01261 Xylose isomerase-like TIM barrel JJJ22_09485 PF00596 Class II Aldolase and Adducin N-terminal domain JJJ22_09490 PF17042 Nucleotide-binding C-terminal domain JJJ22_09490 PF07005 Sugar-binding N-terminal domain JJJ22_09495 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JJJ22_09495 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JJJ22_09500 PF08220 DeoR-like helix-turn-helix domain JJJ22_09500 PF00455 DeoR C terminal sensor domain JJJ22_09510 PF07995 Glucose / Sorbosone dehydrogenase JJJ22_09515 PF00916 Sulfate permease family JJJ22_09515 PF01740 STAS domain JJJ22_09520 PF03976 Polyphosphate kinase 2 (PPK2) JJJ22_09545 PF01817 Chorismate mutase type II JJJ22_09545 PF00800 Prephenate dehydratase JJJ22_09570 PF08349 Protein of unknown function (DUF1722) JJJ22_09575 PF13411 MerR HTH family regulatory protein JJJ22_09580 PF03441 FAD binding domain of DNA photolyase JJJ22_09580 PF00875 DNA photolyase JJJ22_09590 PF00106 short chain dehydrogenase JJJ22_09630 PF00210 Ferritin-like domain JJJ22_09635 PF03063 Prismane/CO dehydrogenase family JJJ22_09640 PF00175 Oxidoreductase NAD-binding domain JJJ22_09640 PF00042 Globin JJJ22_09640 PF00970 Oxidoreductase FAD-binding domain JJJ22_09645 PF16363 GDP-mannose 4,6 dehydratase JJJ22_09660 PF00722 Glycosyl hydrolases family 16 JJJ22_09665 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit JJJ22_09670 PF00232 Glycosyl hydrolase family 1 JJJ22_09685 PF00916 Sulfate permease family JJJ22_09685 PF01740 STAS domain JJJ22_09695 PF01965 DJ-1/PfpI family JJJ22_09700 PF02558 Ketopantoate reductase PanE/ApbA JJJ22_09700 PF08546 Ketopantoate reductase PanE/ApbA C terminal JJJ22_09705 PF04461 Protein of unknown function (DUF520) JJJ22_09710 PF03502 Nucleoside-specific channel-forming protein, Tsx JJJ22_09715 PF07690 Major Facilitator Superfamily JJJ22_09725 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JJJ22_09735 PF05175 Methyltransferase small domain JJJ22_09740 PF01722 BolA-like protein JJJ22_09745 PF11973 NQRA C-terminal domain JJJ22_09745 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) JJJ22_09750 PF03116 NQR2, RnfD, RnfE family JJJ22_09755 PF04205 FMN-binding domain JJJ22_09760 PF02508 Rnf-Nqr subunit, membrane protein JJJ22_09765 PF02508 Rnf-Nqr subunit, membrane protein JJJ22_09770 PF00175 Oxidoreductase NAD-binding domain JJJ22_09770 PF00111 2Fe-2S iron-sulfur cluster binding domain JJJ22_09770 PF00970 Oxidoreductase FAD-binding domain JJJ22_09775 PF02424 ApbE family JJJ22_09790 PF00817 impB/mucB/samB family JJJ22_09790 PF11799 impB/mucB/samB family C-terminal domain JJJ22_09790 PF11798 IMS family HHH motif JJJ22_09795 PF00672 HAMP domain JJJ22_09795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJJ22_09800 PF03466 LysR substrate binding domain JJJ22_09800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_09810 PF04241 Protein of unknown function (DUF423) JJJ22_09815 PF01728 FtsJ-like methyltransferase JJJ22_09815 PF18125 RlmM ferredoxin-like domain JJJ22_09825 PF00180 Isocitrate/isopropylmalate dehydrogenase JJJ22_09825 PF18324 Hypothetical protein TT1725 JJJ22_09830 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JJJ22_09830 PF01367 5'-3' exonuclease, C-terminal SAM fold JJJ22_09835 PF11892 Domain of unknown function (DUF3412) JJJ22_09835 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases JJJ22_09835 PF03641 Possible lysine decarboxylase JJJ22_09840 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_09850 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term JJJ22_09850 PF14489 QueF-like protein JJJ22_09855 PF07348 Syd protein (SUKH-2) JJJ22_09860 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) JJJ22_09885 PF04287 tRNA pseudouridine synthase C JJJ22_09890 PF00849 RNA pseudouridylate synthase JJJ22_09895 PF00258 Flavodoxin JJJ22_09900 PF02264 LamB porin JJJ22_09905 PF07148 Maltose operon periplasmic protein precursor (MalM) JJJ22_09910 PF00367 phosphotransferase system, EIIB JJJ22_09910 PF02378 Phosphotransferase system, EIIC JJJ22_09915 PF11944 Protein of unknown function (DUF3461) JJJ22_09920 PF00132 Bacterial transferase hexapeptide (six repeats) JJJ22_09920 PF14602 Hexapeptide repeat of succinyl-transferase JJJ22_09920 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal JJJ22_09925 PF01966 HD domain JJJ22_09925 PF08335 GlnD PII-uridylyltransferase JJJ22_09925 PF01842 ACT domain JJJ22_09925 PF01909 Nucleotidyltransferase domain JJJ22_09930 PF00557 Metallopeptidase family M24 JJJ22_09935 PF00318 Ribosomal protein S2 JJJ22_09940 PF00889 Elongation factor TS JJJ22_09945 PF00696 Amino acid kinase family JJJ22_09950 PF01765 Ribosome recycling factor JJJ22_09955 PF01255 Putative undecaprenyl diphosphate synthase JJJ22_09965 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JJJ22_09965 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JJJ22_09965 PF13288 DXP reductoisomerase C-terminal domain JJJ22_09970 PF02163 Peptidase family M50 JJJ22_09970 PF17820 PDZ domain JJJ22_09975 PF01103 Surface antigen JJJ22_09975 PF07244 Surface antigen variable number repeat JJJ22_09980 PF03938 Outer membrane protein (OmpH-like) JJJ22_09985 PF00132 Bacterial transferase hexapeptide (six repeats) JJJ22_09985 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD JJJ22_09990 PF07977 FabA-like domain JJJ22_09995 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 JJJ22_09995 PF00132 Bacterial transferase hexapeptide (six repeats) JJJ22_10000 PF02684 Lipid-A-disaccharide synthetase JJJ22_10005 PF01351 Ribonuclease HII JJJ22_10010 PF02811 PHP domain JJJ22_10010 PF14579 Helix-hairpin-helix motif JJJ22_10010 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JJJ22_10010 PF01336 OB-fold nucleic acid binding domain JJJ22_10010 PF07733 Bacterial DNA polymerase III alpha NTPase domain JJJ22_10015 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JJJ22_10025 PF03466 LysR substrate binding domain JJJ22_10025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_10035 PF13520 Amino acid permease JJJ22_10045 PF16326 ABC transporter C-terminal domain JJJ22_10045 PF00005 ABC transporter JJJ22_10045 PF12848 ABC transporter JJJ22_10055 PF01431 Peptidase family M13 JJJ22_10055 PF05649 Peptidase family M13 JJJ22_10060 PF11734 TilS substrate C-terminal domain JJJ22_10060 PF01171 PP-loop family JJJ22_10060 PF09179 TilS substrate binding domain JJJ22_10065 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_10070 PF02254 TrkA-N domain JJJ22_10070 PF02080 TrkA-C domain JJJ22_10070 PF00999 Sodium/hydrogen exchanger family JJJ22_10090 PF00072 Response regulator receiver domain JJJ22_10090 PF00196 Bacterial regulatory proteins, luxR family JJJ22_10100 PF00128 Alpha amylase, catalytic domain JJJ22_10115 PF00535 Glycosyl transferase family 2 JJJ22_10130 PF01471 Putative peptidoglycan binding domain JJJ22_10130 PF03734 L,D-transpeptidase catalytic domain JJJ22_10135 PF05951 Bacterial protein of unknown function (DUF882) JJJ22_10145 PF03458 UPF0126 domain JJJ22_10155 PF02463 RecF/RecN/SMC N terminal domain JJJ22_10155 PF06470 SMC proteins Flexible Hinge Domain JJJ22_10160 PF04354 ZipA, C-terminal FtsZ-binding domain JJJ22_10165 PF03120 NAD-dependent DNA ligase OB-fold domain JJJ22_10165 PF00533 BRCA1 C Terminus (BRCT) domain JJJ22_10165 PF01653 NAD-dependent DNA ligase adenylation domain JJJ22_10165 PF12826 Helix-hairpin-helix motif JJJ22_10165 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JJJ22_10175 PF13597 Anaerobic ribonucleoside-triphosphate reductase JJJ22_10175 PF03477 ATP cone domain JJJ22_10185 PF01679 Proteolipid membrane potential modulator JJJ22_10205 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JJJ22_10205 PF00529 HlyD membrane-fusion protein of T1SS JJJ22_10210 PF01047 MarR family JJJ22_10215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_10215 PF00989 PAS fold JJJ22_10215 PF17203 Single cache domain 3 JJJ22_10215 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JJJ22_10220 PF00072 Response regulator receiver domain JJJ22_10220 PF12431 Transcriptional regulator JJJ22_10230 PF00248 Aldo/keto reductase family JJJ22_10240 PF00892 EamA-like transporter family JJJ22_10250 PF00171 Aldehyde dehydrogenase family JJJ22_10255 PF00158 Sigma-54 interaction domain JJJ22_10255 PF02954 Bacterial regulatory protein, Fis family JJJ22_10255 PF01590 GAF domain JJJ22_10260 PF17158 Membrane-associated sensor, integral membrane domain JJJ22_10260 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_10265 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JJJ22_10270 PF00486 Transcriptional regulatory protein, C terminal JJJ22_10270 PF00072 Response regulator receiver domain JJJ22_10275 PF00989 PAS fold JJJ22_10275 PF00512 His Kinase A (phospho-acceptor) domain JJJ22_10275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_10275 PF11808 Phosphate regulon sensor protein PhoR JJJ22_10280 PF12849 PBP superfamily domain JJJ22_10290 PF01609 Transposase DDE domain JJJ22_10290 PF13808 DDE_Tnp_1-associated JJJ22_10300 PF00480 ROK family JJJ22_10305 PF03932 CutC family JJJ22_10325 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JJJ22_10325 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JJJ22_10330 PF00005 ABC transporter JJJ22_10345 PF00497 Bacterial extracellular solute-binding proteins, family 3 JJJ22_10350 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_10355 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_10360 PF00005 ABC transporter JJJ22_10370 PF00293 NUDIX domain JJJ22_10375 PF08534 Redoxin JJJ22_10380 PF01699 Sodium/calcium exchanger protein JJJ22_10385 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JJJ22_10385 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JJJ22_10390 PF01235 Sodium:alanine symporter family JJJ22_10400 PF00860 Permease family JJJ22_10405 PF00072 Response regulator receiver domain JJJ22_10405 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_10410 PF10692 Protein of unknown function (DUF2498) JJJ22_10415 PF01554 MatE JJJ22_10420 PF12833 Helix-turn-helix domain JJJ22_10425 PF03949 Malic enzyme, NAD binding domain JJJ22_10425 PF00390 Malic enzyme, N-terminal domain JJJ22_10430 PF01389 OmpA-like transmembrane domain JJJ22_10430 PF00691 OmpA family JJJ22_10435 PF00691 OmpA family JJJ22_10435 PF01389 OmpA-like transmembrane domain JJJ22_10440 PF01389 OmpA-like transmembrane domain JJJ22_10440 PF00691 OmpA family JJJ22_10455 PF00209 Sodium:neurotransmitter symporter family JJJ22_10460 PF01734 Patatin-like phospholipase JJJ22_10465 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_10465 PF17158 Membrane-associated sensor, integral membrane domain JJJ22_10475 PF00873 AcrB/AcrD/AcrF family JJJ22_10480 PF08497 Radical SAM N-terminal JJJ22_10480 PF04055 Radical SAM superfamily JJJ22_10480 PF11842 Domain of unknown function (DUF3362) JJJ22_10485 PF13808 DDE_Tnp_1-associated JJJ22_10485 PF01609 Transposase DDE domain JJJ22_10500 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JJJ22_10505 PF02075 Crossover junction endodeoxyribonuclease RuvC JJJ22_10510 PF00230 Major intrinsic protein JJJ22_10520 PF01464 Transglycosylase SLT domain JJJ22_10520 PF10145 Phage-related minor tail protein JJJ22_10520 PF01551 Peptidase family M23 JJJ22_10535 PF13091 PLD-like domain JJJ22_10535 PF13396 Phospholipase_D-nuclease N-terminal JJJ22_10545 PF00551 Formyl transferase JJJ22_10545 PF01842 ACT domain JJJ22_10550 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JJJ22_10560 PF00085 Thioredoxin JJJ22_10565 PF01648 4'-phosphopantetheinyl transferase superfamily JJJ22_10575 PF00877 NlpC/P60 family JJJ22_10580 PF05971 RNA methyltransferase JJJ22_10585 PF01575 MaoC like domain JJJ22_10595 PF01476 LysM domain JJJ22_10595 PF03734 L,D-transpeptidase catalytic domain JJJ22_10595 PF17969 L,D-transpeptidase C-terminal domain JJJ22_10635 PF09588 YqaJ-like viral recombinase domain JJJ22_10655 PF13148 Protein of unknown function (DUF3987) JJJ22_10665 PF04002 RadC-like JAB domain JJJ22_10670 PF00012 Hsp70 protein JJJ22_10680 PF00816 H-NS histone family JJJ22_10695 PF13356 Arm DNA-binding domain JJJ22_10695 PF00589 Phage integrase family JJJ22_10700 PF09308 LuxQ, periplasmic JJJ22_10700 PF00072 Response regulator receiver domain JJJ22_10700 PF00512 His Kinase A (phospho-acceptor) domain JJJ22_10700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_10720 PF10725 Protein of unknown function (DUF2517) JJJ22_10730 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase JJJ22_10735 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JJJ22_10735 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JJJ22_10740 PF02690 Na+/Pi-cotransporter JJJ22_10750 PF13520 Amino acid permease JJJ22_10755 PF00324 Amino acid permease JJJ22_10765 PF00202 Aminotransferase class-III JJJ22_10770 PF00171 Aldehyde dehydrogenase family JJJ22_10775 PF01381 Helix-turn-helix JJJ22_10775 PF07883 Cupin domain JJJ22_10780 PF01266 FAD dependent oxidoreductase JJJ22_10810 PF00072 Response regulator receiver domain JJJ22_10810 PF02954 Bacterial regulatory protein, Fis family JJJ22_10810 PF00158 Sigma-54 interaction domain JJJ22_10815 PF00999 Sodium/hydrogen exchanger family JJJ22_10815 PF02254 TrkA-N domain JJJ22_10830 PF04381 Putative exonuclease, RdgC JJJ22_10835 PF00583 Acetyltransferase (GNAT) family JJJ22_10840 PF00149 Calcineurin-like phosphoesterase JJJ22_10840 PF12320 Type 5 capsule protein repressor C-terminal domain JJJ22_10850 PF01292 Prokaryotic cytochrome b561 JJJ22_10855 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JJJ22_10860 PF05524 PEP-utilising enzyme, N-terminal JJJ22_10860 PF02896 PEP-utilising enzyme, TIM barrel domain JJJ22_10860 PF00391 PEP-utilising enzyme, mobile domain JJJ22_10865 PF00381 PTS HPr component phosphorylation site JJJ22_10870 PF00291 Pyridoxal-phosphate dependent enzyme JJJ22_10875 PF01434 Peptidase family M41 JJJ22_10875 PF00004 ATPase family associated with various cellular activities (AAA) JJJ22_10875 PF17862 AAA+ lid domain JJJ22_10885 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JJJ22_10885 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JJJ22_10890 PF18389 TrmO C-terminal domain JJJ22_10890 PF01980 tRNA-methyltransferase O JJJ22_10910 PF00664 ABC transporter transmembrane region JJJ22_10910 PF00005 ABC transporter JJJ22_10915 PF00664 ABC transporter transmembrane region JJJ22_10915 PF00005 ABC transporter JJJ22_10930 PF00072 Response regulator receiver domain JJJ22_10930 PF00486 Transcriptional regulatory protein, C terminal JJJ22_10940 PF03737 Aldolase/RraA JJJ22_10955 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) JJJ22_10960 PF00588 SpoU rRNA Methylase family JJJ22_10965 PF03447 Homoserine dehydrogenase, NAD binding domain JJJ22_10965 PF00742 Homoserine dehydrogenase JJJ22_10965 PF13840 ACT domain JJJ22_10965 PF01842 ACT domain JJJ22_10965 PF00696 Amino acid kinase family JJJ22_10970 PF00288 GHMP kinases N terminal domain JJJ22_10970 PF08544 GHMP kinases C terminal JJJ22_10975 PF00291 Pyridoxal-phosphate dependent enzyme JJJ22_10975 PF14821 Threonine synthase N terminus JJJ22_11005 PF02028 BCCT, betaine/carnitine/choline family transporter JJJ22_11035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJJ22_11035 PF08447 PAS fold JJJ22_11035 PF13426 PAS domain JJJ22_11050 PF04632 Fusaric acid resistance protein family JJJ22_11055 PF03205 Molybdopterin guanine dinucleotide synthesis protein B JJJ22_11060 PF12804 MobA-like NTP transferase domain JJJ22_11065 PF03949 Malic enzyme, NAD binding domain JJJ22_11065 PF00390 Malic enzyme, N-terminal domain JJJ22_11075 PF00860 Permease family JJJ22_11085 PF10282 Lactonase, 7-bladed beta-propeller JJJ22_11090 PF01810 LysE type translocator JJJ22_11095 PF12795 Mechanosensitive ion channel porin domain JJJ22_11095 PF12794 Mechanosensitive ion channel inner membrane domain 1 JJJ22_11095 PF00924 Mechanosensitive ion channel JJJ22_11100 PF00224 Pyruvate kinase, barrel domain JJJ22_11100 PF02887 Pyruvate kinase, alpha/beta domain JJJ22_11105 PF08007 Cupin superfamily protein JJJ22_11110 PF00206 Lyase JJJ22_11110 PF08328 Adenylosuccinate lyase C-terminal JJJ22_11115 PF04356 Protein of unknown function (DUF489) JJJ22_11125 PF00293 NUDIX domain JJJ22_11130 PF00849 RNA pseudouridylate synthase JJJ22_11135 PF00583 Acetyltransferase (GNAT) family JJJ22_11175 PF00180 Isocitrate/isopropylmalate dehydrogenase JJJ22_11185 PF00291 Pyridoxal-phosphate dependent enzyme JJJ22_11190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_11190 PF03466 LysR substrate binding domain JJJ22_11195 PF00816 H-NS histone family JJJ22_11200 PF00793 DAHP synthetase I family JJJ22_11205 PF08021 Siderophore-interacting FAD-binding domain JJJ22_11205 PF04954 Siderophore-interacting protein JJJ22_11210 PF02321 Outer membrane efflux protein JJJ22_11215 PF00005 ABC transporter JJJ22_11215 PF02687 FtsX-like permease family JJJ22_11215 PF12704 MacB-like periplasmic core domain JJJ22_11220 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JJJ22_11230 PF02463 RecF/RecN/SMC N terminal domain JJJ22_11235 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_11235 PF17158 Membrane-associated sensor, integral membrane domain JJJ22_11240 PF01513 ATP-NAD kinase JJJ22_11245 PF01025 GrpE JJJ22_11250 PF00012 Hsp70 protein JJJ22_11255 PF00684 DnaJ central domain JJJ22_11255 PF01556 DnaJ C terminal domain JJJ22_11255 PF00226 DnaJ domain JJJ22_11260 PF02264 LamB porin JJJ22_11260 PF11471 Maltoporin periplasmic N-terminal extension JJJ22_11265 PF00294 pfkB family carbohydrate kinase JJJ22_11270 PF02378 Phosphotransferase system, EIIC JJJ22_11270 PF00367 phosphotransferase system, EIIB JJJ22_11275 PF00251 Glycosyl hydrolases family 32 N-terminal domain JJJ22_11275 PF08244 Glycosyl hydrolases family 32 C terminal JJJ22_11280 PF00356 Bacterial regulatory proteins, lacI family JJJ22_11280 PF13407 Periplasmic binding protein domain JJJ22_11285 PF02308 MgtC family JJJ22_11295 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJJ22_11310 PF04143 Sulphur transport JJJ22_11325 PF00873 AcrB/AcrD/AcrF family JJJ22_11330 PF00563 EAL domain JJJ22_11330 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_11330 PF03707 Bacterial signalling protein N terminal repeat JJJ22_11335 PF10437 Bacterial lipoate protein ligase C-terminus JJJ22_11335 PF03099 Biotin/lipoate A/B protein ligase family JJJ22_11350 PF00873 AcrB/AcrD/AcrF family JJJ22_11355 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JJJ22_11355 PF00529 HlyD membrane-fusion protein of T1SS JJJ22_11365 PF03372 Endonuclease/Exonuclease/phosphatase family JJJ22_11375 PF00072 Response regulator receiver domain JJJ22_11380 PF00011 Hsp20/alpha crystallin family JJJ22_11385 PF02424 ApbE family JJJ22_11390 PF00127 Copper binding proteins, plastocyanin/azurin family JJJ22_11405 PF01047 MarR family JJJ22_11415 PF01156 Inosine-uridine preferring nucleoside hydrolase JJJ22_11425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_11425 PF03466 LysR substrate binding domain JJJ22_11430 PF02627 Carboxymuconolactone decarboxylase family JJJ22_11435 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JJJ22_11435 PF06481 COX Aromatic Rich Motif JJJ22_11440 PF00115 Cytochrome C and Quinol oxidase polypeptide I JJJ22_11445 PF00510 Cytochrome c oxidase subunit III JJJ22_11450 PF03626 Prokaryotic Cytochrome C oxidase subunit IV JJJ22_11455 PF01040 UbiA prenyltransferase family JJJ22_11460 PF07690 Major Facilitator Superfamily JJJ22_11465 PF07237 Protein of unknown function (DUF1428) JJJ22_11470 PF02668 Taurine catabolism dioxygenase TauD, TfdA family JJJ22_11475 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_11480 PF00005 ABC transporter JJJ22_11485 PF04069 Substrate binding domain of ABC-type glycine betaine transport system JJJ22_11495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_11495 PF03466 LysR substrate binding domain JJJ22_11515 PF13657 HipA N-terminal domain JJJ22_11515 PF07804 HipA-like C-terminal domain JJJ22_11520 PF01381 Helix-turn-helix JJJ22_11530 PF00290 Tryptophan synthase alpha chain JJJ22_11535 PF00291 Pyridoxal-phosphate dependent enzyme JJJ22_11540 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase JJJ22_11540 PF00218 Indole-3-glycerol phosphate synthase JJJ22_11545 PF00591 Glycosyl transferase family, a/b domain JJJ22_11545 PF02885 Glycosyl transferase family, helical bundle domain JJJ22_11550 PF02885 Glycosyl transferase family, helical bundle domain JJJ22_11550 PF00591 Glycosyl transferase family, a/b domain JJJ22_11550 PF00117 Glutamine amidotransferase class-I JJJ22_11560 PF00425 chorismate binding enzyme JJJ22_11560 PF04715 Anthranilate synthase component I, N terminal region JJJ22_11565 PF02811 PHP domain JJJ22_11570 PF01300 Telomere recombination JJJ22_11575 PF02616 Segregation and condensation protein ScpA JJJ22_11580 PF04079 Segregation and condensation complex subunit ScpB JJJ22_11585 PF00849 RNA pseudouridylate synthase JJJ22_11585 PF01479 S4 domain JJJ22_11605 PF00440 Bacterial regulatory proteins, tetR family JJJ22_11605 PF08361 MAATS-type transcriptional repressor, C-terminal region JJJ22_11610 PF00529 HlyD membrane-fusion protein of T1SS JJJ22_11610 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JJJ22_11615 PF00873 AcrB/AcrD/AcrF family JJJ22_11620 PF02321 Outer membrane efflux protein JJJ22_11650 PF01695 IstB-like ATP binding protein JJJ22_11665 PF13361 UvrD-like helicase C-terminal domain JJJ22_11665 PF00580 UvrD/REP helicase N-terminal domain JJJ22_11665 PF12705 PD-(D/E)XK nuclease superfamily JJJ22_11685 PF00440 Bacterial regulatory proteins, tetR family JJJ22_11690 PF09317 Domain of unknown function (DUF1974) JJJ22_11690 PF02770 Acyl-CoA dehydrogenase, middle domain JJJ22_11690 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJJ22_11690 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJJ22_11695 PF00873 AcrB/AcrD/AcrF family JJJ22_11705 PF00224 Pyruvate kinase, barrel domain JJJ22_11705 PF02887 Pyruvate kinase, alpha/beta domain JJJ22_11710 PF01418 Helix-turn-helix domain, rpiR family JJJ22_11710 PF01380 SIS domain JJJ22_11715 PF02685 Glucokinase JJJ22_11720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_11725 PF00072 Response regulator receiver domain JJJ22_11725 PF00486 Transcriptional regulatory protein, C terminal JJJ22_11730 PF16363 GDP-mannose 4,6 dehydratase JJJ22_11735 PF01943 Polysaccharide biosynthesis protein JJJ22_11750 PF00534 Glycosyl transferases group 1 JJJ22_11750 PF13439 Glycosyltransferase Family 4 JJJ22_11755 PF00535 Glycosyl transferase family 2 JJJ22_11760 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JJJ22_11760 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JJJ22_11760 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JJJ22_11765 PF02397 Bacterial sugar transferase JJJ22_11770 PF04321 RmlD substrate binding domain JJJ22_11775 PF00483 Nucleotidyl transferase JJJ22_11780 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase JJJ22_11785 PF02706 Chain length determinant protein JJJ22_11795 PF18412 Outer-membrane lipoprotein Wza C-terminal domain JJJ22_11795 PF02563 Polysaccharide biosynthesis/export protein JJJ22_11795 PF10531 SLBB domain JJJ22_11800 PF01451 Low molecular weight phosphotyrosine protein phosphatase JJJ22_11805 PF13807 G-rich domain on putative tyrosine kinase JJJ22_11805 PF02706 Chain length determinant protein JJJ22_11805 PF13614 AAA domain JJJ22_11820 PF06251 Capsule biosynthesis GfcC JJJ22_11825 PF06082 Exopolysaccharide biosynthesis protein YbjH JJJ22_11845 PF04337 Protein of unknown function, DUF480 JJJ22_11850 PF00271 Helicase conserved C-terminal domain JJJ22_11850 PF00176 SNF2 family N-terminal domain JJJ22_11850 PF04434 SWIM zinc finger JJJ22_11855 PF05472 DNA replication terminus site-binding protein (Ter protein) JJJ22_11865 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family JJJ22_11870 PF00676 Dehydrogenase E1 component JJJ22_11875 PF02780 Transketolase, C-terminal domain JJJ22_11875 PF02779 Transketolase, pyrimidine binding domain JJJ22_11880 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JJJ22_11880 PF00364 Biotin-requiring enzyme JJJ22_11880 PF02817 e3 binding domain JJJ22_11885 PF00313 'Cold-shock' DNA-binding domain JJJ22_11910 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJJ22_11915 PF00892 EamA-like transporter family JJJ22_11925 PF01966 HD domain JJJ22_11930 PF00849 RNA pseudouridylate synthase JJJ22_11930 PF01479 S4 domain JJJ22_11940 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJJ22_11945 PF12850 Calcineurin-like phosphoesterase superfamily domain JJJ22_11960 PF13144 Chaperone for flagella basal body P-ring formation JJJ22_11965 PF01584 CheW-like domain JJJ22_11965 PF00072 Response regulator receiver domain JJJ22_11970 PF01739 CheR methyltransferase, SAM binding domain JJJ22_11970 PF03705 CheR methyltransferase, all-alpha domain JJJ22_11975 PF00460 Flagella basal body rod protein JJJ22_11980 PF00460 Flagella basal body rod protein JJJ22_11980 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JJJ22_11990 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JJJ22_11990 PF00460 Flagella basal body rod protein JJJ22_11990 PF07559 Flagellar basal body protein FlaE JJJ22_11995 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JJJ22_11995 PF00460 Flagella basal body rod protein JJJ22_12000 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JJJ22_12000 PF00460 Flagella basal body rod protein JJJ22_12005 PF02107 Flagellar L-ring protein JJJ22_12010 PF02119 Flagellar P-ring protein JJJ22_12015 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JJJ22_12015 PF10135 Rod binding protein JJJ22_12020 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JJJ22_12020 PF07196 Flagellin hook IN motif JJJ22_12030 PF00571 CBS domain JJJ22_12030 PF03448 MgtE intracellular N domain JJJ22_12030 PF01769 Divalent cation transporter JJJ22_12035 PF02541 Ppx/GppA phosphatase family JJJ22_12040 PF13090 Polyphosphate kinase C-terminal domain 2 JJJ22_12040 PF17941 Polyphosphate kinase C-terminal domain 1 JJJ22_12040 PF02503 Polyphosphate kinase middle domain JJJ22_12040 PF13089 Polyphosphate kinase N-terminal domain JJJ22_12045 PF01842 ACT domain JJJ22_12055 PF00158 Sigma-54 interaction domain JJJ22_12055 PF06490 Flagellar regulatory protein FleQ JJJ22_12055 PF02954 Bacterial regulatory protein, Fis family JJJ22_12060 PF00512 His Kinase A (phospho-acceptor) domain JJJ22_12060 PF13188 PAS domain JJJ22_12060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_12065 PF00158 Sigma-54 interaction domain JJJ22_12065 PF02954 Bacterial regulatory protein, Fis family JJJ22_12065 PF00072 Response regulator receiver domain JJJ22_12070 PF01784 NIF3 (NGG1p interacting factor 3) JJJ22_12075 PF00551 Formyl transferase JJJ22_12080 PF02769 AIR synthase related protein, C-terminal domain JJJ22_12080 PF00586 AIR synthase related protein, N-terminal domain JJJ22_12095 PF00308 Bacterial dnaA protein JJJ22_12105 PF12323 Helix-turn-helix domain JJJ22_12110 PF07282 Putative transposase DNA-binding domain JJJ22_12110 PF01385 Probable transposase JJJ22_12110 PF12323 Helix-turn-helix domain JJJ22_12115 PF07282 Putative transposase DNA-binding domain JJJ22_12115 PF12323 Helix-turn-helix domain JJJ22_12115 PF01385 Probable transposase JJJ22_12120 PF00463 Isocitrate lyase family JJJ22_12125 PF01274 Malate synthase JJJ22_12140 PF14437 MafB19-like deaminase JJJ22_12145 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_12150 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_12155 PF00005 ABC transporter JJJ22_12160 PF01895 PhoU domain JJJ22_12165 PF03471 Transporter associated domain JJJ22_12165 PF00571 CBS domain JJJ22_12165 PF01595 Cyclin M transmembrane N-terminal domain JJJ22_12175 PF02965 Vitamin B12 dependent methionine synthase, activation domain JJJ22_12175 PF02574 Homocysteine S-methyltransferase JJJ22_12175 PF02310 B12 binding domain JJJ22_12175 PF02607 B12 binding domain JJJ22_12175 PF00809 Pterin binding enzyme JJJ22_12180 PF13520 Amino acid permease JJJ22_12185 PF04116 Fatty acid hydroxylase superfamily JJJ22_12190 PF00005 ABC transporter JJJ22_12195 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_12200 PF00497 Bacterial extracellular solute-binding proteins, family 3 JJJ22_12210 PF01272 Transcription elongation factor, GreA/GreB, C-term JJJ22_12210 PF14760 Rnk N-terminus JJJ22_12225 PF00245 Alkaline phosphatase JJJ22_12230 PF00245 Alkaline phosphatase JJJ22_12235 PF01926 50S ribosome-binding GTPase JJJ22_12245 PF00850 Histone deacetylase domain JJJ22_12260 PF06733 DEAD_2 JJJ22_12260 PF13307 Helicase C-terminal domain JJJ22_12265 PF13609 Gram-negative porin JJJ22_12275 PF00155 Aminotransferase class I and II JJJ22_12280 PF05872 Bacterial protein of unknown function (DUF853) JJJ22_12295 PF03772 Competence protein JJJ22_12295 PF00753 Metallo-beta-lactamase superfamily JJJ22_12300 PF00005 ABC transporter JJJ22_12300 PF00664 ABC transporter transmembrane region JJJ22_12305 PF02606 Tetraacyldisaccharide-1-P 4'-kinase JJJ22_12310 PF03966 Trm112p-like protein JJJ22_12315 PF02348 Cytidylyltransferase JJJ22_12320 PF00072 Response regulator receiver domain JJJ22_12320 PF00196 Bacterial regulatory proteins, luxR family JJJ22_12325 PF02151 UvrB/uvrC motif JJJ22_12325 PF01541 GIY-YIG catalytic domain JJJ22_12325 PF08459 UvrC Helix-hairpin-helix N-terminal JJJ22_12330 PF01066 CDP-alcohol phosphatidyltransferase JJJ22_12350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJJ22_12350 PF08447 PAS fold JJJ22_12350 PF13426 PAS domain JJJ22_12355 PF08240 Alcohol dehydrogenase GroES-like domain JJJ22_12355 PF00107 Zinc-binding dehydrogenase JJJ22_12360 PF16925 Tetracyclin repressor-like, C-terminal domain JJJ22_12360 PF00440 Bacterial regulatory proteins, tetR family JJJ22_12365 PF04226 Transglycosylase associated protein JJJ22_12370 PF00149 Calcineurin-like phosphoesterase JJJ22_12380 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JJJ22_12385 PF09190 DALR domain JJJ22_12385 PF01406 tRNA synthetases class I (C) catalytic domain JJJ22_12420 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_12420 PF13185 GAF domain JJJ22_12455 PF01169 Uncharacterized protein family UPF0016 JJJ22_12460 PF01253 Translation initiation factor SUI1 JJJ22_12470 PF17910 FeoB cytosolic helical domain JJJ22_12470 PF02421 Ferrous iron transport protein B JJJ22_12470 PF07664 Ferrous iron transport protein B C terminus JJJ22_12470 PF07670 Nucleoside recognition JJJ22_12480 PF00437 Type II/IV secretion system protein JJJ22_12495 PF01032 FecCD transport family JJJ22_12500 PF00005 ABC transporter JJJ22_12505 PF00793 DAHP synthetase I family JJJ22_12510 PF01219 Prokaryotic diacylglycerol kinase JJJ22_12515 PF01842 ACT domain JJJ22_12515 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JJJ22_12515 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JJJ22_12520 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JJJ22_12525 PF01812 5-formyltetrahydrofolate cyclo-ligase family JJJ22_12535 PF01113 Dihydrodipicolinate reductase, N-terminus JJJ22_12535 PF05173 Dihydrodipicolinate reductase, C-terminus JJJ22_12540 PF00117 Glutamine amidotransferase class-I JJJ22_12540 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JJJ22_12545 PF02142 MGS-like domain JJJ22_12545 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JJJ22_12545 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JJJ22_12550 PF08502 LeuA allosteric (dimerisation) domain JJJ22_12550 PF00682 HMGL-like JJJ22_12555 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_12560 PF07759 Protein of unknown function (DUF1615) JJJ22_12565 PF08378 Nuclease-related domain JJJ22_12585 PF00270 DEAD/DEAH box helicase JJJ22_12585 PF00271 Helicase conserved C-terminal domain JJJ22_12595 PF14521 Lysine-specific metallo-endopeptidase JJJ22_12620 PF00497 Bacterial extracellular solute-binding proteins, family 3 JJJ22_12625 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_12630 PF00005 ABC transporter JJJ22_12635 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JJJ22_12635 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJJ22_12640 PF01645 Conserved region in glutamate synthase JJJ22_12640 PF01493 GXGXG motif JJJ22_12640 PF04898 Glutamate synthase central domain JJJ22_12640 PF00310 Glutamine amidotransferases class-II JJJ22_12645 PF04055 Radical SAM superfamily JJJ22_12645 PF16199 Radical_SAM C-terminal domain JJJ22_12650 PF00005 ABC transporter JJJ22_12650 PF03412 Peptidase C39 family JJJ22_12650 PF00664 ABC transporter transmembrane region JJJ22_12700 PF00324 Amino acid permease JJJ22_12710 PF03618 Kinase/pyrophosphorylase JJJ22_12715 PF00391 PEP-utilising enzyme, mobile domain JJJ22_12715 PF02896 PEP-utilising enzyme, TIM barrel domain JJJ22_12715 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JJJ22_12745 PF03180 NLPA lipoprotein JJJ22_12755 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JJJ22_12755 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JJJ22_12755 PF11890 Domain of unknown function (DUF3410) JJJ22_12760 PF01118 Semialdehyde dehydrogenase, NAD binding domain JJJ22_12760 PF02774 Semialdehyde dehydrogenase, dimerisation domain JJJ22_12770 PF01416 tRNA pseudouridine synthase JJJ22_12775 PF01039 Carboxyl transferase domain JJJ22_12775 PF17848 Acetyl-coA carboxylase zinc finger domain JJJ22_12780 PF02875 Mur ligase family, glutamate ligase domain JJJ22_12780 PF08245 Mur ligase middle domain JJJ22_12785 PF05036 Sporulation related domain JJJ22_12790 PF04358 DsrC like protein JJJ22_12795 PF12805 FUSC-like inner membrane protein yccS JJJ22_12800 PF01027 Inhibitor of apoptosis-promoting Bax1 JJJ22_12810 PF00593 TonB dependent receptor JJJ22_12810 PF07660 Secretin and TonB N terminus short domain JJJ22_12810 PF07715 TonB-dependent Receptor Plug Domain JJJ22_12820 PF04303 PrpF protein JJJ22_12825 PF00330 Aconitase family (aconitate hydratase) JJJ22_12825 PF00694 Aconitase C-terminal domain JJJ22_12830 PF00285 Citrate synthase, C-terminal domain JJJ22_12845 PF08448 PAS fold JJJ22_12845 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_12850 PF00849 RNA pseudouridylate synthase JJJ22_12860 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JJJ22_12865 PF04209 homogentisate 1,2-dioxygenase JJJ22_12875 PF02798 Glutathione S-transferase, N-terminal domain JJJ22_12875 PF14497 Glutathione S-transferase, C-terminal domain JJJ22_12890 PF00733 Asparagine synthase JJJ22_12890 PF13537 Glutamine amidotransferase domain JJJ22_12900 PF13344 Haloacid dehalogenase-like hydrolase JJJ22_12905 PF00962 Adenosine/AMP deaminase JJJ22_12910 PF00107 Zinc-binding dehydrogenase JJJ22_12910 PF08240 Alcohol dehydrogenase GroES-like domain JJJ22_12915 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JJJ22_12920 PF03741 Integral membrane protein TerC family JJJ22_12920 PF03471 Transporter associated domain JJJ22_12930 PF01565 FAD binding domain JJJ22_12930 PF02913 FAD linked oxidases, C-terminal domain JJJ22_12930 PF13183 4Fe-4S dicluster domain JJJ22_12940 PF03061 Thioesterase superfamily JJJ22_12945 PF03880 DbpA RNA binding domain JJJ22_12945 PF00270 DEAD/DEAH box helicase JJJ22_12945 PF00271 Helicase conserved C-terminal domain JJJ22_12960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_12960 PF03466 LysR substrate binding domain JJJ22_12965 PF07690 Major Facilitator Superfamily JJJ22_12970 PF03553 Na+/H+ antiporter family JJJ22_12970 PF13726 Na+-H+ antiporter family JJJ22_12975 PF00929 Exonuclease JJJ22_12980 PF00672 HAMP domain JJJ22_12980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJJ22_12980 PF12729 Four helix bundle sensory module for signal transduction JJJ22_12985 PF18393 MotY N-terminal domain JJJ22_12985 PF00691 OmpA family JJJ22_12990 PF00459 Inositol monophosphatase family JJJ22_13000 PF02798 Glutathione S-transferase, N-terminal domain JJJ22_13000 PF00043 Glutathione S-transferase, C-terminal domain JJJ22_13005 PF02798 Glutathione S-transferase, N-terminal domain JJJ22_13005 PF00043 Glutathione S-transferase, C-terminal domain JJJ22_13015 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_13020 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_13020 PF12911 N-terminal TM domain of oligopeptide transport permease C JJJ22_13025 PF00005 ABC transporter JJJ22_13025 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJJ22_13030 PF07690 Major Facilitator Superfamily JJJ22_13040 PF05164 Cell division protein ZapA JJJ22_13045 PF03695 Uncharacterised protein family (UPF0149) JJJ22_13050 PF01494 FAD binding domain JJJ22_13055 PF01494 FAD binding domain JJJ22_13060 PF01571 Aminomethyltransferase folate-binding domain JJJ22_13060 PF08669 Glycine cleavage T-protein C-terminal barrel domain JJJ22_13065 PF01597 Glycine cleavage H-protein JJJ22_13070 PF02347 Glycine cleavage system P-protein JJJ22_13090 PF07690 Major Facilitator Superfamily JJJ22_13100 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJJ22_13100 PF13192 Thioredoxin domain JJJ22_13105 PF00578 AhpC/TSA family JJJ22_13105 PF10417 C-terminal domain of 1-Cys peroxiredoxin JJJ22_13110 PF00571 CBS domain JJJ22_13115 PF02547 Queuosine biosynthesis protein JJJ22_13120 PF01702 Queuine tRNA-ribosyltransferase JJJ22_13125 PF02699 Preprotein translocase subunit JJJ22_13130 PF02355 Protein export membrane protein JJJ22_13130 PF07549 SecD/SecF GG Motif JJJ22_13130 PF13721 SecD export protein N-terminal TM region JJJ22_13135 PF07549 SecD/SecF GG Motif JJJ22_13135 PF02355 Protein export membrane protein JJJ22_13140 PF00581 Rhodanese-like domain JJJ22_13145 PF13181 Tetratricopeptide repeat JJJ22_13145 PF07719 Tetratricopeptide repeat JJJ22_13150 PF01136 Peptidase family U32 JJJ22_13155 PF01136 Peptidase family U32 JJJ22_13160 PF02036 SCP-2 sterol transfer family JJJ22_13165 PF00588 SpoU rRNA Methylase family JJJ22_13170 PF02082 Transcriptional regulator JJJ22_13175 PF00266 Aminotransferase class-V JJJ22_13180 PF01592 NifU-like N terminal domain JJJ22_13185 PF01521 Iron-sulphur cluster biosynthesis JJJ22_13190 PF07743 HSCB C-terminal oligomerisation domain JJJ22_13190 PF00226 DnaJ domain JJJ22_13195 PF00012 Hsp70 protein JJJ22_13200 PF00111 2Fe-2S iron-sulfur cluster binding domain JJJ22_13205 PF00883 Cytosol aminopeptidase family, catalytic domain JJJ22_13205 PF12404 Peptidase JJJ22_13210 PF12404 Peptidase JJJ22_13210 PF00883 Cytosol aminopeptidase family, catalytic domain JJJ22_13215 PF00334 Nucleoside diphosphate kinase JJJ22_13220 PF04055 Radical SAM superfamily JJJ22_13230 PF13464 Domain of unknown function (DUF4115) JJJ22_13235 PF04551 GcpE protein JJJ22_13240 PF13393 Histidyl-tRNA synthetase JJJ22_13240 PF03129 Anticodon binding domain JJJ22_13245 PF09976 Tetratricopeptide repeat-like domain JJJ22_13250 PF13360 PQQ-like domain JJJ22_13255 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JJJ22_13255 PF01926 50S ribosome-binding GTPase JJJ22_13260 PF07191 zinc-ribbons JJJ22_13265 PF01464 Transglycosylase SLT domain JJJ22_13265 PF00497 Bacterial extracellular solute-binding proteins, family 3 JJJ22_13270 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal JJJ22_13270 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JJJ22_13270 PF02769 AIR synthase related protein, C-terminal domain JJJ22_13275 PF00361 Proton-conducting membrane transporter JJJ22_13280 PF00361 Proton-conducting membrane transporter JJJ22_13285 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JJJ22_13285 PF00361 Proton-conducting membrane transporter JJJ22_13290 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JJJ22_13295 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 JJJ22_13300 PF12838 4Fe-4S dicluster domain JJJ22_13305 PF00146 NADH dehydrogenase JJJ22_13310 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JJJ22_13310 PF00384 Molybdopterin oxidoreductase JJJ22_13310 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JJJ22_13315 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JJJ22_13315 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JJJ22_13325 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit JJJ22_13325 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit JJJ22_13330 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit JJJ22_13335 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 JJJ22_13340 PF13677 Membrane MotB of proton-channel complex MotA/MotB JJJ22_13340 PF00691 OmpA family JJJ22_13345 PF01618 MotA/TolQ/ExbB proton channel family JJJ22_13355 PF02796 Helix-turn-helix domain of resolvase JJJ22_13355 PF00239 Resolvase, N terminal domain JJJ22_13385 PF04536 TPM domain JJJ22_13395 PF03411 Penicillin-insensitive murein endopeptidase JJJ22_13405 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JJJ22_13410 PF00248 Aldo/keto reductase family JJJ22_13425 PF01212 Beta-eliminating lyase JJJ22_13435 PF00072 Response regulator receiver domain JJJ22_13435 PF00486 Transcriptional regulatory protein, C terminal JJJ22_13440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_13440 PF03466 LysR substrate binding domain JJJ22_13450 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_13450 PF03707 Bacterial signalling protein N terminal repeat JJJ22_13450 PF13188 PAS domain JJJ22_13450 PF00563 EAL domain JJJ22_13455 PF03806 AbgT putative transporter family JJJ22_13460 PF00881 Nitroreductase family JJJ22_13475 PF07690 Major Facilitator Superfamily JJJ22_13480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_13480 PF03466 LysR substrate binding domain JJJ22_13485 PF00925 GTP cyclohydrolase II JJJ22_13490 PF02224 Cytidylate kinase JJJ22_13495 PF00575 S1 RNA binding domain JJJ22_13500 PF00216 Bacterial DNA-binding protein JJJ22_13510 PF18073 Rubredoxin metal binding domain JJJ22_13515 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JJJ22_13530 PF06508 Queuosine biosynthesis protein QueC JJJ22_13535 PF04055 Radical SAM superfamily JJJ22_13540 PF12843 Putative quorum-sensing-regulated virulence factor JJJ22_13545 PF01923 Cobalamin adenosyltransferase JJJ22_13550 PF00816 H-NS histone family JJJ22_13560 PF03553 Na+/H+ antiporter family JJJ22_13565 PF00265 Thymidine kinase JJJ22_13575 PF10722 Putative bacterial sensory transduction regulator JJJ22_13585 PF00156 Phosphoribosyl transferase domain JJJ22_13610 PF00455 DeoR C terminal sensor domain JJJ22_13610 PF08220 DeoR-like helix-turn-helix domain JJJ22_13615 PF00141 Peroxidase JJJ22_13635 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JJJ22_13635 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JJJ22_13640 PF01053 Cys/Met metabolism PLP-dependent enzyme JJJ22_13650 PF13460 NAD(P)H-binding JJJ22_13655 PF03466 LysR substrate binding domain JJJ22_13655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_13660 PF02311 AraC-like ligand binding domain JJJ22_13660 PF12833 Helix-turn-helix domain JJJ22_13665 PF00196 Bacterial regulatory proteins, luxR family JJJ22_13665 PF00563 EAL domain JJJ22_13675 PF07715 TonB-dependent Receptor Plug Domain JJJ22_13675 PF00593 TonB dependent receptor JJJ22_13685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_13685 PF03466 LysR substrate binding domain JJJ22_13690 PF01717 Cobalamin-independent synthase, Catalytic domain JJJ22_13690 PF08267 Cobalamin-independent synthase, N-terminal domain JJJ22_13700 PF00571 CBS domain JJJ22_13700 PF01743 Poly A polymerase head domain JJJ22_13705 PF01266 FAD dependent oxidoreductase JJJ22_13710 PF04244 Deoxyribodipyrimidine photo-lyase-related protein JJJ22_13720 PF00768 D-alanyl-D-alanine carboxypeptidase JJJ22_13725 PF03918 Cytochrome C biogenesis protein JJJ22_13730 PF08534 Redoxin JJJ22_13735 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JJJ22_13735 PF01578 Cytochrome C assembly protein JJJ22_13740 PF03916 Polysulphide reductase, NrfD JJJ22_13745 PF13247 4Fe-4S dicluster domain JJJ22_13745 PF00037 4Fe-4S binding domain JJJ22_13750 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) JJJ22_13750 PF13435 Cytochrome c554 and c-prime JJJ22_13755 PF02335 Cytochrome c552 JJJ22_13775 PF02754 Cysteine-rich domain JJJ22_13775 PF13183 4Fe-4S dicluster domain JJJ22_13785 PF00890 FAD binding domain JJJ22_13790 PF04324 BFD-like [2Fe-2S] binding domain JJJ22_13790 PF01266 FAD dependent oxidoreductase JJJ22_13795 PF02810 SEC-C motif JJJ22_13800 PF00672 HAMP domain JJJ22_13800 PF17200 Single Cache domain 2 JJJ22_13800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJJ22_13805 PF00480 ROK family JJJ22_13805 PF01047 MarR family JJJ22_13810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_13810 PF00989 PAS fold JJJ22_13810 PF17203 Single cache domain 3 JJJ22_13810 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JJJ22_13815 PF00072 Response regulator receiver domain JJJ22_13820 PF01970 Tripartite tricarboxylate transporter TctA family JJJ22_13830 PF03401 Tripartite tricarboxylate transporter family receptor JJJ22_13840 PF06826 Predicted Permease Membrane Region JJJ22_13840 PF02080 TrkA-C domain JJJ22_13850 PF00271 Helicase conserved C-terminal domain JJJ22_13850 PF04851 Type III restriction enzyme, res subunit JJJ22_13850 PF02151 UvrB/uvrC motif JJJ22_13850 PF12344 Ultra-violet resistance protein B JJJ22_13850 PF17757 UvrB interaction domain JJJ22_13860 PF09335 SNARE associated Golgi protein JJJ22_13865 PF02600 Disulfide bond formation protein DsbB JJJ22_13870 PF06450 Bacterial Na+/H+ antiporter B (NhaB) JJJ22_13875 PF00392 Bacterial regulatory proteins, gntR family JJJ22_13875 PF07840 FadR C-terminal domain JJJ22_13880 PF04293 SpoVR like protein JJJ22_13885 PF04285 Protein of unknown function (DUF444) JJJ22_13890 PF06798 PrkA serine protein kinase C-terminal domain JJJ22_13890 PF08298 PrkA AAA domain JJJ22_13895 PF09382 RQC domain JJJ22_13895 PF00570 HRDC domain JJJ22_13895 PF00270 DEAD/DEAH box helicase JJJ22_13895 PF16124 RecQ zinc-binding JJJ22_13895 PF00271 Helicase conserved C-terminal domain JJJ22_13900 PF00375 Sodium:dicarboxylate symporter family JJJ22_13905 PF03222 Tryptophan/tyrosine permease family JJJ22_13910 PF00293 NUDIX domain JJJ22_13915 PF00425 chorismate binding enzyme JJJ22_13915 PF04715 Anthranilate synthase component I, N terminal region JJJ22_13940 PF00343 Carbohydrate phosphorylase JJJ22_13950 PF00939 Sodium:sulfate symporter transmembrane region JJJ22_13955 PF00085 Thioredoxin JJJ22_13960 PF00072 Response regulator receiver domain JJJ22_13960 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JJJ22_13960 PF00512 His Kinase A (phospho-acceptor) domain JJJ22_13960 PF01627 Hpt domain JJJ22_13960 PF00672 HAMP domain JJJ22_13960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_13965 PF00664 ABC transporter transmembrane region JJJ22_13965 PF00005 ABC transporter JJJ22_13970 PF00664 ABC transporter transmembrane region JJJ22_13970 PF00005 ABC transporter JJJ22_13990 PF01575 MaoC like domain JJJ22_13995 PF00561 alpha/beta hydrolase fold JJJ22_13995 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus JJJ22_14015 PF08543 Phosphomethylpyrimidine kinase JJJ22_14020 PF03992 Antibiotic biosynthesis monooxygenase JJJ22_14025 PF13673 Acetyltransferase (GNAT) domain JJJ22_14035 PF01928 CYTH domain JJJ22_14045 PF02694 Uncharacterised BCR, YnfA/UPF0060 family JJJ22_14055 PF13673 Acetyltransferase (GNAT) domain JJJ22_14065 PF00270 DEAD/DEAH box helicase JJJ22_14065 PF00271 Helicase conserved C-terminal domain JJJ22_14070 PF00255 Glutathione peroxidase JJJ22_14080 PF01820 D-ala D-ala ligase N-terminus JJJ22_14080 PF07478 D-ala D-ala ligase C-terminus JJJ22_14085 PF03942 DTW domain JJJ22_14105 PF01925 Sulfite exporter TauE/SafE JJJ22_14110 PF03466 LysR substrate binding domain JJJ22_14110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_14125 PF11398 Protein of unknown function (DUF2813) JJJ22_14150 PF00883 Cytosol aminopeptidase family, catalytic domain JJJ22_14150 PF02789 Cytosol aminopeptidase family, N-terminal domain JJJ22_14155 PF13419 Haloacid dehalogenase-like hydrolase JJJ22_14160 PF07687 Peptidase dimerisation domain JJJ22_14160 PF01546 Peptidase family M20/M25/M40 JJJ22_14165 PF00365 Phosphofructokinase JJJ22_14170 PF00121 Triosephosphate isomerase JJJ22_14175 PF02698 DUF218 domain JJJ22_14180 PF13847 Methyltransferase domain JJJ22_14185 PF03882 MukF winged-helix domain JJJ22_14185 PF17193 MukF C-terminal domain JJJ22_14185 PF17192 MukF middle domain JJJ22_14190 PF04288 MukE-like family JJJ22_14195 PF16330 MukB hinge domain JJJ22_14195 PF04310 MukB N-terminal JJJ22_14200 PF05036 Sporulation related domain JJJ22_14200 PF03330 Lytic transglycolase JJJ22_14220 PF00300 Histidine phosphatase superfamily (branch 1) JJJ22_14230 PF12323 Helix-turn-helix domain JJJ22_14230 PF01385 Probable transposase JJJ22_14230 PF07282 Putative transposase DNA-binding domain JJJ22_14235 PF12323 Helix-turn-helix domain JJJ22_14235 PF07282 Putative transposase DNA-binding domain JJJ22_14235 PF01385 Probable transposase JJJ22_14240 PF12323 Helix-turn-helix domain JJJ22_14255 PF03831 PhnA domain JJJ22_14255 PF08274 PhnA Zinc-Ribbon JJJ22_14290 PF01713 Smr domain JJJ22_14295 PF05175 Methyltransferase small domain JJJ22_14300 PF01264 Chorismate synthase JJJ22_14310 PF00270 DEAD/DEAH box helicase JJJ22_14310 PF00271 Helicase conserved C-terminal domain JJJ22_14325 PF03222 Tryptophan/tyrosine permease family JJJ22_14330 PF00356 Bacterial regulatory proteins, lacI family JJJ22_14330 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JJJ22_14335 PF00381 PTS HPr component phosphorylation site JJJ22_14335 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JJJ22_14340 PF00294 pfkB family carbohydrate kinase JJJ22_14345 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JJJ22_14345 PF02378 Phosphotransferase system, EIIC JJJ22_14350 PF06945 Protein of unknown function (DUF1289) JJJ22_14355 PF06725 3D domain JJJ22_14355 PF03562 MltA specific insert domain JJJ22_14360 PF00111 2Fe-2S iron-sulfur cluster binding domain JJJ22_14365 PF00268 Ribonucleotide reductase, small chain JJJ22_14370 PF03477 ATP cone domain JJJ22_14370 PF00317 Ribonucleotide reductase, all-alpha domain JJJ22_14370 PF02867 Ribonucleotide reductase, barrel domain JJJ22_14375 PF13419 Haloacid dehalogenase-like hydrolase JJJ22_14385 PF03989 DNA gyrase C-terminal domain, beta-propeller JJJ22_14385 PF00521 DNA gyrase/topoisomerase IV, subunit A JJJ22_14395 PF04055 Radical SAM superfamily JJJ22_14410 PF02824 TGS domain JJJ22_14410 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JJJ22_14410 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JJJ22_14410 PF03129 Anticodon binding domain JJJ22_14415 PF00707 Translation initiation factor IF-3, C-terminal domain JJJ22_14415 PF05198 Translation initiation factor IF-3, N-terminal domain JJJ22_14420 PF01632 Ribosomal protein L35 JJJ22_14425 PF00453 Ribosomal protein L20 JJJ22_14430 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JJJ22_14430 PF01409 tRNA synthetases class II core domain (F) JJJ22_14435 PF01588 Putative tRNA binding domain JJJ22_14435 PF03147 Ferredoxin-fold anticodon binding domain JJJ22_14435 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JJJ22_14435 PF03484 tRNA synthetase B5 domain JJJ22_14435 PF03483 B3/4 domain JJJ22_14440 PF00216 Bacterial DNA-binding protein JJJ22_14445 PF00512 His Kinase A (phospho-acceptor) domain JJJ22_14445 PF09456 RcsC Alpha-Beta-Loop (ABL) JJJ22_14445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_14445 PF00072 Response regulator receiver domain JJJ22_14460 PF02146 Sir2 family JJJ22_14475 PF00356 Bacterial regulatory proteins, lacI family JJJ22_14480 PF00294 pfkB family carbohydrate kinase JJJ22_14485 PF13407 Periplasmic binding protein domain JJJ22_14490 PF02653 Branched-chain amino acid transport system / permease component JJJ22_14495 PF00005 ABC transporter JJJ22_14500 PF05025 RbsD / FucU transport protein family JJJ22_14505 PF00043 Glutathione S-transferase, C-terminal domain JJJ22_14505 PF02798 Glutathione S-transferase, N-terminal domain JJJ22_14520 PF01171 PP-loop family JJJ22_14525 PF00582 Universal stress protein family JJJ22_14530 PF00027 Cyclic nucleotide-binding domain JJJ22_14530 PF13545 Crp-like helix-turn-helix domain JJJ22_14545 PF00403 Heavy-metal-associated domain JJJ22_14555 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JJJ22_14555 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP JJJ22_14570 PF00115 Cytochrome C and Quinol oxidase polypeptide I JJJ22_14580 PF13185 GAF domain JJJ22_14585 PF17516 ProQ C-terminal domain JJJ22_14585 PF04352 ProQ/FINO family JJJ22_14590 PF17804 Tail specific protease N-terminal domain JJJ22_14590 PF11818 C-terminal domain of tail specific protease (DUF3340) JJJ22_14590 PF00595 PDZ domain JJJ22_14590 PF03572 Peptidase family S41 JJJ22_14595 PF01433 Peptidase family M1 domain JJJ22_14595 PF17432 Domain of unknown function (DUF3458_C) ARM repeats JJJ22_14595 PF11940 Domain of unknown function (DUF3458) Ig-like fold JJJ22_14605 PF05088 Bacterial NAD-glutamate dehydrogenase JJJ22_14610 PF01180 Dihydroorotate dehydrogenase JJJ22_14615 PF07126 Cell-division protein ZapC JJJ22_14620 PF01170 Putative RNA methylase family UPF0020 JJJ22_14620 PF02926 THUMP domain JJJ22_14620 PF10672 S-adenosylmethionine-dependent methyltransferase JJJ22_14630 PF00005 ABC transporter JJJ22_14630 PF12848 ABC transporter JJJ22_14630 PF16326 ABC transporter C-terminal domain JJJ22_14640 PF04957 Ribosome modulation factor JJJ22_14645 PF07977 FabA-like domain JJJ22_14650 PF05362 Lon protease (S16) C-terminal proteolytic domain JJJ22_14650 PF13654 AAA domain JJJ22_14660 PF07130 YebG protein JJJ22_14670 PF04403 Paraquat-inducible protein A JJJ22_14675 PF02470 MlaD protein JJJ22_14680 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF JJJ22_14680 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF JJJ22_14680 PF01189 16S rRNA methyltransferase RsmB/F JJJ22_14690 PF00589 Phage integrase family JJJ22_14695 PF01026 TatD related DNase JJJ22_14700 PF09115 DNA polymerase III, delta subunit, C terminal JJJ22_14705 PF02223 Thymidylate kinase JJJ22_14710 PF02618 YceG-like family JJJ22_14715 PF01063 Amino-transferase class IV JJJ22_14720 PF00109 Beta-ketoacyl synthase, N-terminal domain JJJ22_14720 PF02801 Beta-ketoacyl synthase, C-terminal domain JJJ22_14725 PF00550 Phosphopantetheine attachment site JJJ22_14735 PF00698 Acyl transferase domain JJJ22_14740 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JJJ22_14740 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JJJ22_14745 PF02504 Fatty acid synthesis protein JJJ22_14750 PF01783 Ribosomal L32p protein family JJJ22_14755 PF02620 Large ribosomal RNA subunit accumulation protein YceD JJJ22_14765 PF02545 Maf-like protein JJJ22_14770 PF01479 S4 domain JJJ22_14770 PF00849 RNA pseudouridylate synthase JJJ22_14775 PF12111 Polyribonucleotide phosphorylase C terminal JJJ22_14775 PF10150 Ribonuclease E/G family JJJ22_14775 PF00575 S1 RNA binding domain JJJ22_14790 PF01384 Phosphate transporter family JJJ22_14795 PF00692 dUTPase JJJ22_14800 PF00485 Phosphoribulokinase / Uridine kinase family JJJ22_14805 PF10609 NUBPL iron-transfer P-loop NTPase JJJ22_14810 PF09334 tRNA synthetases class I (M) JJJ22_14810 PF08264 Anticodon-binding domain of tRNA JJJ22_14810 PF01588 Putative tRNA binding domain JJJ22_14820 PF00708 Acylphosphatase JJJ22_14825 PF12729 Four helix bundle sensory module for signal transduction JJJ22_14825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJJ22_14825 PF00672 HAMP domain JJJ22_14830 PF10672 S-adenosylmethionine-dependent methyltransferase JJJ22_14830 PF17785 PUA-like domain JJJ22_14845 PF00586 AIR synthase related protein, N-terminal domain JJJ22_14845 PF02769 AIR synthase related protein, C-terminal domain JJJ22_14855 PF00753 Metallo-beta-lactamase superfamily JJJ22_14860 PF00072 Response regulator receiver domain JJJ22_14870 PF01386 Ribosomal L25p family JJJ22_14880 PF00270 DEAD/DEAH box helicase JJJ22_14880 PF00271 Helicase conserved C-terminal domain JJJ22_14880 PF04408 Helicase associated domain (HA2) JJJ22_14880 PF11898 Domain of unknown function (DUF3418) JJJ22_14880 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold JJJ22_14885 PF02272 DHHA1 domain JJJ22_14885 PF01368 DHH family JJJ22_14885 PF00571 CBS domain JJJ22_14885 PF01743 Poly A polymerase head domain JJJ22_14890 PF00196 Bacterial regulatory proteins, luxR family JJJ22_14890 PF00072 Response regulator receiver domain JJJ22_14895 PF07670 Nucleoside recognition JJJ22_14900 PF05726 Pirin C-terminal cupin domain JJJ22_14900 PF02678 Pirin JJJ22_14905 PF03466 LysR substrate binding domain JJJ22_14905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_14910 PF02575 YbaB/EbfC DNA-binding family JJJ22_14915 PF12169 DNA polymerase III subunits gamma and tau domain III JJJ22_14915 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding JJJ22_14915 PF12170 DNA polymerase III tau subunit V interacting with alpha JJJ22_14920 PF00156 Phosphoribosyl transferase domain JJJ22_14925 PF04304 Protein of unknown function (DUF454) JJJ22_14930 PF01207 Dihydrouridine synthase (Dus) JJJ22_14940 PF00892 EamA-like transporter family JJJ22_14950 PF01612 3'-5' exonuclease JJJ22_14950 PF00570 HRDC domain JJJ22_14955 PF13193 AMP-binding enzyme C-terminal domain JJJ22_14955 PF00501 AMP-binding enzyme JJJ22_14960 PF00561 alpha/beta hydrolase fold JJJ22_14970 PF00814 Glycoprotease family JJJ22_14975 PF04851 Type III restriction enzyme, res subunit JJJ22_14975 PF13307 Helicase C-terminal domain JJJ22_14985 PF01634 ATP phosphoribosyltransferase JJJ22_14985 PF08029 HisG, C-terminal domain JJJ22_14990 PF00815 Histidinol dehydrogenase JJJ22_14995 PF00155 Aminotransferase class I and II JJJ22_15000 PF08645 Polynucleotide kinase 3 phosphatase JJJ22_15000 PF00475 Imidazoleglycerol-phosphate dehydratase JJJ22_15005 PF00117 Glutamine amidotransferase class-I JJJ22_15010 PF00977 Histidine biosynthesis protein JJJ22_15015 PF00072 Response regulator receiver domain JJJ22_15020 PF08448 PAS fold JJJ22_15020 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_15025 PF00072 Response regulator receiver domain JJJ22_15025 PF01627 Hpt domain JJJ22_15025 PF00512 His Kinase A (phospho-acceptor) domain JJJ22_15025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_15030 PF00977 Histidine biosynthesis protein JJJ22_15035 PF01502 Phosphoribosyl-AMP cyclohydrolase JJJ22_15035 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase JJJ22_15045 PF08279 HTH domain JJJ22_15045 PF13280 WYL domain JJJ22_15055 PF01385 Probable transposase JJJ22_15055 PF07282 Putative transposase DNA-binding domain JJJ22_15055 PF12323 Helix-turn-helix domain JJJ22_15060 PF12323 Helix-turn-helix domain JJJ22_15060 PF07282 Putative transposase DNA-binding domain JJJ22_15060 PF01385 Probable transposase JJJ22_15065 PF12323 Helix-turn-helix domain JJJ22_15080 PF05433 Glycine zipper 2TM domain JJJ22_15095 PF01032 FecCD transport family JJJ22_15100 PF00005 ABC transporter JJJ22_15105 PF07690 Major Facilitator Superfamily JJJ22_15115 PF07152 YaeQ protein JJJ22_15125 PF00378 Enoyl-CoA hydratase/isomerase JJJ22_15125 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JJJ22_15125 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JJJ22_15130 PF02803 Thiolase, C-terminal domain JJJ22_15130 PF00108 Thiolase, N-terminal domain JJJ22_15135 PF07726 ATPase family associated with various cellular activities (AAA) JJJ22_15135 PF17863 AAA lid domain JJJ22_15140 PF01882 Protein of unknown function DUF58 JJJ22_15165 PF04542 Sigma-70 region 2 JJJ22_15165 PF08281 Sigma-70, region 4 JJJ22_15175 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JJJ22_15180 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JJJ22_15185 PF08668 HDOD domain JJJ22_15185 PF00563 EAL domain JJJ22_15190 PF02803 Thiolase, C-terminal domain JJJ22_15190 PF00108 Thiolase, N-terminal domain JJJ22_15195 PF09278 MerR, DNA binding JJJ22_15195 PF00376 MerR family regulatory protein JJJ22_15200 PF00375 Sodium:dicarboxylate symporter family JJJ22_15205 PF06865 Pyrimidine/purine nucleoside phosphorylase JJJ22_15210 PF03313 Serine dehydratase alpha chain JJJ22_15210 PF03315 Serine dehydratase beta chain JJJ22_15215 PF03313 Serine dehydratase alpha chain JJJ22_15215 PF03315 Serine dehydratase beta chain JJJ22_15220 PF13406 Transglycosylase SLT domain JJJ22_15225 PF05166 YcgL domain JJJ22_15230 PF05209 Septum formation inhibitor MinC, N-terminal domain JJJ22_15230 PF03775 Septum formation inhibitor MinC, C-terminal domain JJJ22_15235 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JJJ22_15240 PF03776 Septum formation topological specificity factor MinE JJJ22_15245 PF04269 Protein of unknown function, DUF440 JJJ22_15250 PF00912 Transglycosylase JJJ22_15255 PF04269 Protein of unknown function, DUF440 JJJ22_15265 PF13509 S1 domain JJJ22_15265 PF17783 CvfB-like winged helix domain JJJ22_15270 PF12323 Helix-turn-helix domain JJJ22_15270 PF07282 Putative transposase DNA-binding domain JJJ22_15270 PF01385 Probable transposase JJJ22_15310 PF02525 Flavodoxin-like fold JJJ22_15315 PF00892 EamA-like transporter family JJJ22_15320 PF02222 ATP-grasp domain JJJ22_15320 PF01370 NAD dependent epimerase/dehydratase family JJJ22_15325 PF13419 Haloacid dehalogenase-like hydrolase JJJ22_15340 PF00677 Lumazine binding domain JJJ22_15345 PF06786 Uncharacterised protein family (UPF0253) JJJ22_15350 PF01554 MatE JJJ22_15380 PF00136 DNA polymerase family B JJJ22_15380 PF03104 DNA polymerase family B, exonuclease domain JJJ22_15385 PF02678 Pirin JJJ22_15385 PF05726 Pirin C-terminal cupin domain JJJ22_15395 PF03279 Bacterial lipid A biosynthesis acyltransferase JJJ22_15400 PF03279 Bacterial lipid A biosynthesis acyltransferase JJJ22_15410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_15410 PF03466 LysR substrate binding domain JJJ22_15415 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JJJ22_15415 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JJJ22_15420 PF01261 Xylose isomerase-like TIM barrel JJJ22_15425 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_15430 PF00933 Glycosyl hydrolase family 3 N terminal domain JJJ22_15440 PF03466 LysR substrate binding domain JJJ22_15440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_15450 PF00232 Glycosyl hydrolase family 1 JJJ22_15455 PF03466 LysR substrate binding domain JJJ22_15455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_15460 PF00072 Response regulator receiver domain JJJ22_15460 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_15465 PF00384 Molybdopterin oxidoreductase JJJ22_15470 PF02634 FdhD/NarQ family JJJ22_15485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_15485 PF03466 LysR substrate binding domain JJJ22_15490 PF13407 Periplasmic binding protein domain JJJ22_15495 PF00005 ABC transporter JJJ22_15500 PF02653 Branched-chain amino acid transport system / permease component JJJ22_15505 PF02653 Branched-chain amino acid transport system / permease component JJJ22_15510 PF12706 Beta-lactamase superfamily domain JJJ22_15525 PF01738 Dienelactone hydrolase family JJJ22_15530 PF12146 Serine aminopeptidase, S33 JJJ22_15535 PF03466 LysR substrate binding domain JJJ22_15535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_15620 PF01925 Sulfite exporter TauE/SafE JJJ22_15625 PF13520 Amino acid permease JJJ22_15635 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JJJ22_15635 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JJJ22_15640 PF00378 Enoyl-CoA hydratase/isomerase JJJ22_15645 PF00378 Enoyl-CoA hydratase/isomerase JJJ22_15650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJJ22_15650 PF02770 Acyl-CoA dehydrogenase, middle domain JJJ22_15650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJJ22_15655 PF00171 Aldehyde dehydrogenase family JJJ22_15660 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJJ22_15660 PF02770 Acyl-CoA dehydrogenase, middle domain JJJ22_15660 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJJ22_15665 PF01039 Carboxyl transferase domain JJJ22_15670 PF00378 Enoyl-CoA hydratase/isomerase JJJ22_15675 PF00289 Biotin carboxylase, N-terminal domain JJJ22_15675 PF02785 Biotin carboxylase C-terminal domain JJJ22_15675 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JJJ22_15675 PF00364 Biotin-requiring enzyme JJJ22_15680 PF00682 HMGL-like JJJ22_15685 PF00376 MerR family regulatory protein JJJ22_15685 PF09278 MerR, DNA binding JJJ22_15695 PF01184 GPR1/FUN34/yaaH family JJJ22_15700 PF06167 Glucose-regulated metallo-peptidase M90 JJJ22_15710 PF01235 Sodium:alanine symporter family JJJ22_15715 PF00378 Enoyl-CoA hydratase/isomerase JJJ22_15730 PF04341 Protein of unknown function, DUF485 JJJ22_15735 PF00474 Sodium:solute symporter family JJJ22_15740 PF12848 ABC transporter JJJ22_15740 PF00005 ABC transporter JJJ22_15745 PF13145 PPIC-type PPIASE domain JJJ22_15750 PF00216 Bacterial DNA-binding protein JJJ22_15755 PF05362 Lon protease (S16) C-terminal proteolytic domain JJJ22_15755 PF02190 ATP-dependent protease La (LON) substrate-binding domain JJJ22_15755 PF00004 ATPase family associated with various cellular activities (AAA) JJJ22_15760 PF07724 AAA domain (Cdc48 subfamily) JJJ22_15760 PF10431 C-terminal, D2-small domain, of ClpB protein JJJ22_15760 PF06689 ClpX C4-type zinc finger JJJ22_15765 PF00574 Clp protease JJJ22_15770 PF05697 Bacterial trigger factor protein (TF) JJJ22_15770 PF05698 Bacterial trigger factor protein (TF) C-terminus JJJ22_15770 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JJJ22_15785 PF02687 FtsX-like permease family JJJ22_15785 PF12704 MacB-like periplasmic core domain JJJ22_15790 PF00005 ABC transporter JJJ22_15795 PF02687 FtsX-like permease family JJJ22_15795 PF12704 MacB-like periplasmic core domain JJJ22_15805 PF03461 TRCF domain JJJ22_15805 PF02559 CarD-like/TRCF domain JJJ22_15805 PF17757 UvrB interaction domain JJJ22_15805 PF00271 Helicase conserved C-terminal domain JJJ22_15805 PF00270 DEAD/DEAH box helicase JJJ22_15810 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain JJJ22_15820 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJJ22_15825 PF00892 EamA-like transporter family JJJ22_15835 PF00300 Histidine phosphatase superfamily (branch 1) JJJ22_15840 PF00675 Insulinase (Peptidase family M16) JJJ22_15840 PF16187 Middle or third domain of peptidase_M16 JJJ22_15840 PF05193 Peptidase M16 inactive domain JJJ22_15845 PF05724 Thiopurine S-methyltransferase (TPMT) JJJ22_15855 PF01047 MarR family JJJ22_15875 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JJJ22_15875 PF12833 Helix-turn-helix domain JJJ22_15875 PF02805 Metal binding domain of Ada JJJ22_15875 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JJJ22_15895 PF00117 Glutamine amidotransferase class-I JJJ22_15895 PF00958 GMP synthase C terminal domain JJJ22_15895 PF02540 NAD synthase JJJ22_15900 PF00571 CBS domain JJJ22_15900 PF00478 IMP dehydrogenase / GMP reductase domain JJJ22_15910 PF00128 Alpha amylase, catalytic domain JJJ22_15910 PF03423 Carbohydrate binding domain (family 25) JJJ22_15910 PF01373 Glycosyl hydrolase family 14 JJJ22_15920 PF13742 OB-fold nucleic acid binding domain JJJ22_15920 PF02601 Exonuclease VII, large subunit JJJ22_15925 PF04055 Radical SAM superfamily JJJ22_15930 PF00691 OmpA family JJJ22_15940 PF13689 YfiR/HmsC-like JJJ22_15945 PF18024 Helix-turn-helix domain JJJ22_15945 PF00158 Sigma-54 interaction domain JJJ22_15950 PF01329 Pterin 4 alpha carbinolamine dehydratase JJJ22_15955 PF00351 Biopterin-dependent aromatic amino acid hydroxylase JJJ22_15960 PF05128 Domain of unknown function (DUF697) JJJ22_15965 PF04317 YcjX-like family, DUF463 JJJ22_15975 PF06667 Phage shock protein B JJJ22_15980 PF04012 PspA/IM30 family JJJ22_15985 PF02954 Bacterial regulatory protein, Fis family JJJ22_15985 PF00158 Sigma-54 interaction domain JJJ22_15990 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJJ22_15995 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_16000 PF12911 N-terminal TM domain of oligopeptide transport permease C JJJ22_16000 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_16005 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJJ22_16005 PF00005 ABC transporter JJJ22_16010 PF00005 ABC transporter JJJ22_16015 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) JJJ22_16020 PF00356 Bacterial regulatory proteins, lacI family JJJ22_16025 PF00367 phosphotransferase system, EIIB JJJ22_16025 PF02378 Phosphotransferase system, EIIC JJJ22_16030 PF00232 Glycosyl hydrolase family 1 JJJ22_16035 PF00156 Phosphoribosyl transferase domain JJJ22_16040 PF02674 Colicin V production protein JJJ22_16045 PF02403 Seryl-tRNA synthetase N-terminal domain JJJ22_16045 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JJJ22_16050 PF16193 AAA C-terminal domain JJJ22_16050 PF12002 MgsA AAA+ ATPase C terminal JJJ22_16050 PF00004 ATPase family associated with various cellular activities (AAA) JJJ22_16055 PF03548 Outer membrane lipoprotein carrier protein LolA JJJ22_16060 PF13491 4TM region of DNA translocase FtsK/SpoIIIE JJJ22_16060 PF17854 FtsK alpha domain JJJ22_16060 PF09397 Ftsk gamma domain JJJ22_16060 PF01580 FtsK/SpoIIIE family JJJ22_16065 PF01037 Lrp/AsnC ligand binding domain JJJ22_16070 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JJJ22_16070 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JJJ22_16075 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJJ22_16080 PF05230 MASE2 domain JJJ22_16080 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_16085 PF05433 Glycine zipper 2TM domain JJJ22_16090 PF03588 Leucyl/phenylalanyl-tRNA protein transferase JJJ22_16095 PF04376 Arginine-tRNA-protein transferase, N terminus JJJ22_16095 PF04377 Arginine-tRNA-protein transferase, C terminus JJJ22_16100 PF01176 Translation initiation factor 1A / IF-1 JJJ22_16105 PF10431 C-terminal, D2-small domain, of ClpB protein JJJ22_16105 PF02861 Clp amino terminal domain, pathogenicity island component JJJ22_16105 PF17871 AAA lid domain JJJ22_16105 PF07724 AAA domain (Cdc48 subfamily) JJJ22_16105 PF00004 ATPase family associated with various cellular activities (AAA) JJJ22_16110 PF02617 ATP-dependent Clp protease adaptor protein ClpS JJJ22_16115 PF00313 'Cold-shock' DNA-binding domain JJJ22_16120 PF01118 Semialdehyde dehydrogenase, NAD binding domain JJJ22_16120 PF02774 Semialdehyde dehydrogenase, dimerisation domain JJJ22_16125 PF00893 Small Multidrug Resistance protein JJJ22_16135 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding JJJ22_16135 PF18381 YcaO cyclodehydratase C-terminal domain JJJ22_16140 PF01226 Formate/nitrite transporter JJJ22_16145 PF01228 Glycine radical JJJ22_16145 PF02901 Pyruvate formate lyase-like JJJ22_16150 PF03692 Putative zinc- or iron-chelating domain JJJ22_16160 PF02629 CoA binding domain JJJ22_16160 PF00549 CoA-ligase JJJ22_16165 PF08442 ATP-grasp domain JJJ22_16165 PF00549 CoA-ligase JJJ22_16170 PF02817 e3 binding domain JJJ22_16170 PF00364 Biotin-requiring enzyme JJJ22_16170 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JJJ22_16175 PF00676 Dehydrogenase E1 component JJJ22_16175 PF16078 2-oxoglutarate dehydrogenase N-terminus JJJ22_16175 PF02779 Transketolase, pyrimidine binding domain JJJ22_16175 PF16870 2-oxoglutarate dehydrogenase C-terminal JJJ22_16180 PF13085 2Fe-2S iron-sulfur cluster binding domain JJJ22_16185 PF02910 Fumarate reductase flavoprotein C-term JJJ22_16185 PF00890 FAD binding domain JJJ22_16190 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JJJ22_16195 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JJJ22_16200 PF00285 Citrate synthase, C-terminal domain JJJ22_16215 PF00109 Beta-ketoacyl synthase, N-terminal domain JJJ22_16215 PF02801 Beta-ketoacyl synthase, C-terminal domain JJJ22_16220 PF05430 S-adenosyl-L-methionine-dependent methyltransferase JJJ22_16220 PF01266 FAD dependent oxidoreductase JJJ22_16230 PF03606 C4-dicarboxylate anaerobic carrier JJJ22_16245 PF01863 Protein of unknown function DUF45 JJJ22_16260 PF01197 Ribosomal protein L31 JJJ22_16265 PF00444 Ribosomal protein L36 JJJ22_16270 PF12833 Helix-turn-helix domain JJJ22_16270 PF02311 AraC-like ligand binding domain JJJ22_16275 PF02653 Branched-chain amino acid transport system / permease component JJJ22_16280 PF00005 ABC transporter JJJ22_16285 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JJJ22_16290 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JJJ22_16295 PF00596 Class II Aldolase and Adducin N-terminal domain JJJ22_16300 PF11762 L-arabinose isomerase C-terminal domain JJJ22_16300 PF02610 L-arabinose isomerase JJJ22_16305 PF03466 LysR substrate binding domain JJJ22_16305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_16310 PF00155 Aminotransferase class I and II JJJ22_16315 PF00795 Carbon-nitrogen hydrolase JJJ22_16320 PF00497 Bacterial extracellular solute-binding proteins, family 3 JJJ22_16330 PF03706 Lysylphosphatidylglycerol synthase TM region JJJ22_16330 PF09924 Uncharacterised conserved protein (DUF2156) JJJ22_16335 PF00149 Calcineurin-like phosphoesterase JJJ22_16340 PF00929 Exonuclease JJJ22_16340 PF08411 Exonuclease C-terminal JJJ22_16355 PF03788 LrgA family JJJ22_16360 PF04172 LrgB-like family JJJ22_16365 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region JJJ22_16365 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JJJ22_16370 PF00501 AMP-binding enzyme JJJ22_16375 PF08891 YfcL protein JJJ22_16385 PF03741 Integral membrane protein TerC family JJJ22_16390 PF00793 DAHP synthetase I family JJJ22_16395 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JJJ22_16400 PF00266 Aminotransferase class-V JJJ22_16405 PF00766 Electron transfer flavoprotein FAD-binding domain JJJ22_16405 PF01012 Electron transfer flavoprotein domain JJJ22_16410 PF01012 Electron transfer flavoprotein domain JJJ22_16420 PF01544 CorA-like Mg2+ transporter protein JJJ22_16425 PF11143 Protein of unknown function (DUF2919) JJJ22_16440 PF00593 TonB dependent receptor JJJ22_16440 PF07715 TonB-dependent Receptor Plug Domain JJJ22_16445 PF01032 FecCD transport family JJJ22_16450 PF01032 FecCD transport family JJJ22_16455 PF00005 ABC transporter JJJ22_16460 PF17837 4'-phosphopantetheinyl transferase N-terminal domain JJJ22_16460 PF01648 4'-phosphopantetheinyl transferase superfamily JJJ22_16465 PF01497 Periplasmic binding protein JJJ22_16470 PF13193 AMP-binding enzyme C-terminal domain JJJ22_16470 PF00501 AMP-binding enzyme JJJ22_16470 PF00668 Condensation domain JJJ22_16470 PF00550 Phosphopantetheine attachment site JJJ22_16470 PF00975 Thioesterase domain JJJ22_16490 PF00501 AMP-binding enzyme JJJ22_16490 PF13193 AMP-binding enzyme C-terminal domain JJJ22_16490 PF00668 Condensation domain JJJ22_16490 PF00975 Thioesterase domain JJJ22_16490 PF00550 Phosphopantetheine attachment site JJJ22_16495 PF00550 Phosphopantetheine attachment site JJJ22_16495 PF00857 Isochorismatase family JJJ22_16500 PF13193 AMP-binding enzyme C-terminal domain JJJ22_16500 PF00501 AMP-binding enzyme JJJ22_16505 PF00425 chorismate binding enzyme JJJ22_16510 PF07273 Protein of unknown function (DUF1439) JJJ22_16520 PF00483 Nucleotidyl transferase JJJ22_16525 PF03707 Bacterial signalling protein N terminal repeat JJJ22_16525 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_16525 PF00563 EAL domain JJJ22_16540 PF17200 Single Cache domain 2 JJJ22_16540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJJ22_16540 PF00672 HAMP domain JJJ22_16545 PF00294 pfkB family carbohydrate kinase JJJ22_16550 PF01124 MAPEG family JJJ22_16555 PF00762 Ferrochelatase JJJ22_16560 PF05191 Adenylate kinase, active site lid JJJ22_16565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_16565 PF00183 Hsp90 protein JJJ22_16570 PF13662 Toprim domain JJJ22_16570 PF02132 RecR protein JJJ22_16605 PF05638 Type VI secretion system effector, Hcp JJJ22_16625 PF00916 Sulfate permease family JJJ22_16625 PF01740 STAS domain JJJ22_16640 PF14403 Circularly permuted ATP-grasp type 2 JJJ22_16645 PF14403 Circularly permuted ATP-grasp type 2 JJJ22_16645 PF04168 A predicted alpha-helical domain with a conserved ER motif. JJJ22_16675 PF03239 Iron permease FTR1 family JJJ22_16680 PF01593 Flavin containing amine oxidoreductase JJJ22_16700 PF07690 Major Facilitator Superfamily JJJ22_16710 PF03600 Citrate transporter JJJ22_16725 PF00005 ABC transporter JJJ22_16730 PF02687 FtsX-like permease family JJJ22_16730 PF12704 MacB-like periplasmic core domain JJJ22_16755 PF02913 FAD linked oxidases, C-terminal domain JJJ22_16755 PF01565 FAD binding domain JJJ22_16760 PF02589 LUD domain JJJ22_16765 PF11870 Domain of unknown function (DUF3390) JJJ22_16765 PF13183 4Fe-4S dicluster domain JJJ22_16765 PF02589 LUD domain JJJ22_16770 PF02754 Cysteine-rich domain JJJ22_16775 PF02652 L-lactate permease JJJ22_16780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_16780 PF03466 LysR substrate binding domain JJJ22_16815 PF01625 Peptide methionine sulfoxide reductase JJJ22_16820 PF00696 Amino acid kinase family JJJ22_16820 PF00583 Acetyltransferase (GNAT) family JJJ22_16825 PF01842 ACT domain JJJ22_16825 PF00696 Amino acid kinase family JJJ22_16835 PF00884 Sulfatase JJJ22_16840 PF01906 Putative heavy-metal-binding JJJ22_16850 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJJ22_16855 PF05728 Uncharacterised protein family (UPF0227) JJJ22_16860 PF08439 Oligopeptidase F JJJ22_16860 PF01432 Peptidase family M3 JJJ22_16865 PF08439 Oligopeptidase F JJJ22_16865 PF01432 Peptidase family M3 JJJ22_16870 PF05661 Protein of unknown function (DUF808) JJJ22_16880 PF13426 PAS domain JJJ22_16880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJJ22_16880 PF08447 PAS fold JJJ22_16885 PF02355 Protein export membrane protein JJJ22_16885 PF07549 SecD/SecF GG Motif JJJ22_16890 PF13721 SecD export protein N-terminal TM region JJJ22_16890 PF02355 Protein export membrane protein JJJ22_16890 PF07549 SecD/SecF GG Motif JJJ22_16925 PF01230 HIT domain JJJ22_16930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJJ22_16930 PF00672 HAMP domain JJJ22_16940 PF01979 Amidohydrolase family JJJ22_16960 PF00375 Sodium:dicarboxylate symporter family JJJ22_16970 PF01168 Alanine racemase, N-terminal domain JJJ22_16970 PF00842 Alanine racemase, C-terminal domain JJJ22_16975 PF03741 Integral membrane protein TerC family JJJ22_16980 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJJ22_16980 PF00005 ABC transporter JJJ22_16985 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJJ22_16985 PF00005 ABC transporter JJJ22_16990 PF12911 N-terminal TM domain of oligopeptide transport permease C JJJ22_16990 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_16995 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_17000 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJJ22_17005 PF01914 MarC family integral membrane protein JJJ22_17010 PF00171 Aldehyde dehydrogenase family JJJ22_17010 PF00465 Iron-containing alcohol dehydrogenase JJJ22_17015 PF00072 Response regulator receiver domain JJJ22_17020 PF07694 5TMR of 5TMR-LYT JJJ22_17020 PF06580 Histidine kinase JJJ22_17025 PF04397 LytTr DNA-binding domain JJJ22_17025 PF00072 Response regulator receiver domain JJJ22_17030 PF02554 Carbon starvation protein CstA JJJ22_17035 PF00924 Mechanosensitive ion channel JJJ22_17035 PF12795 Mechanosensitive ion channel porin domain JJJ22_17035 PF12794 Mechanosensitive ion channel inner membrane domain 1 JJJ22_17045 PF11742 Protein of unknown function (DUF3302) JJJ22_17050 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JJJ22_17050 PF00529 HlyD membrane-fusion protein of T1SS JJJ22_17055 PF04851 Type III restriction enzyme, res subunit JJJ22_17055 PF00271 Helicase conserved C-terminal domain JJJ22_17060 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family JJJ22_17065 PF00462 Glutaredoxin JJJ22_17075 PF00155 Aminotransferase class I and II JJJ22_17080 PF03606 C4-dicarboxylate anaerobic carrier JJJ22_17085 PF12241 Trans-2-enoyl-CoA reductase catalytic region JJJ22_17085 PF07055 Enoyl reductase FAD binding domain JJJ22_17085 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase JJJ22_17095 PF08447 PAS fold JJJ22_17095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJJ22_17095 PF13426 PAS domain JJJ22_17105 PF00892 EamA-like transporter family JJJ22_17110 PF02508 Rnf-Nqr subunit, membrane protein JJJ22_17115 PF04060 Putative Fe-S cluster JJJ22_17120 PF13375 RnfC Barrel sandwich hybrid domain JJJ22_17120 PF10531 SLBB domain JJJ22_17120 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JJJ22_17120 PF12838 4Fe-4S dicluster domain JJJ22_17125 PF03116 NQR2, RnfD, RnfE family JJJ22_17130 PF04205 FMN-binding domain JJJ22_17135 PF02508 Rnf-Nqr subunit, membrane protein JJJ22_17140 PF00633 Helix-hairpin-helix motif JJJ22_17140 PF00730 HhH-GPD superfamily base excision DNA repair protein JJJ22_17140 PF10576 Iron-sulfur binding domain of endonuclease III JJJ22_17145 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JJJ22_17150 PF00672 HAMP domain JJJ22_17150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJJ22_17150 PF12729 Four helix bundle sensory module for signal transduction JJJ22_17155 PF02535 ZIP Zinc transporter JJJ22_17160 PF01048 Phosphorylase superfamily JJJ22_17170 PF01497 Periplasmic binding protein JJJ22_17190 PF02561 Flagellar protein FliS JJJ22_17195 PF07196 Flagellin hook IN motif JJJ22_17195 PF07195 Flagellar hook-associated protein 2 C-terminus JJJ22_17195 PF02465 Flagellar hook-associated protein 2 N-terminus JJJ22_17200 PF03646 FlaG protein JJJ22_17205 PF07196 Flagellin hook IN motif JJJ22_17205 PF00700 Bacterial flagellin C-terminal helical region JJJ22_17205 PF00669 Bacterial flagellin N-terminal helical region JJJ22_17210 PF03458 UPF0126 domain JJJ22_17225 PF02926 THUMP domain JJJ22_17225 PF02568 Thiamine biosynthesis protein (ThiI) JJJ22_17235 PF00905 Penicillin binding protein transpeptidase domain JJJ22_17235 PF00912 Transglycosylase JJJ22_17235 PF06832 Penicillin-Binding Protein C-terminus Family JJJ22_17240 PF07678 A-macroglobulin TED domain JJJ22_17240 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain JJJ22_17240 PF11974 Bacterial alpha-2-macroglobulin MG3 domain JJJ22_17240 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain JJJ22_17240 PF01835 MG2 domain JJJ22_17240 PF00207 Alpha-2-macroglobulin family JJJ22_17240 PF17962 Bacterial macroglobulin domain 6 JJJ22_17240 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain JJJ22_17240 PF07703 Alpha-2-macroglobulin bait region domain JJJ22_17245 PF01594 AI-2E family transporter JJJ22_17250 PF02321 Outer membrane efflux protein JJJ22_17255 PF00529 HlyD membrane-fusion protein of T1SS JJJ22_17255 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JJJ22_17270 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JJJ22_17270 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJJ22_17275 PF00563 EAL domain JJJ22_17275 PF03707 Bacterial signalling protein N terminal repeat JJJ22_17275 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_17280 PF04055 Radical SAM superfamily JJJ22_17290 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_17295 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_17300 PF00497 Bacterial extracellular solute-binding proteins, family 3 JJJ22_17305 PF00005 ABC transporter JJJ22_17310 PF03956 Lysine exporter LysO JJJ22_17315 PF01979 Amidohydrolase family JJJ22_17320 PF00497 Bacterial extracellular solute-binding proteins, family 3 JJJ22_17330 PF04336 Acyl carrier protein phosphodiesterase JJJ22_17345 PF03960 ArsC family JJJ22_17350 PF00578 AhpC/TSA family JJJ22_17355 PF01435 Peptidase family M48 JJJ22_17355 PF13181 Tetratricopeptide repeat JJJ22_17360 PF01206 Sulfurtransferase TusA JJJ22_17365 PF01594 AI-2E family transporter JJJ22_17375 PF00561 alpha/beta hydrolase fold JJJ22_17380 PF03976 Polyphosphate kinase 2 (PPK2) JJJ22_17385 PF00005 ABC transporter JJJ22_17385 PF08402 TOBE domain JJJ22_17390 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_17395 PF14785 Maltose transport system permease protein MalF P2 domain JJJ22_17395 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_17400 PF01547 Bacterial extracellular solute-binding protein JJJ22_17405 PF04245 37-kD nucleoid-associated bacterial protein JJJ22_17410 PF07208 Protein of unknown function (DUF1414) JJJ22_17415 PF11893 Domain of unknown function (DUF3413) JJJ22_17415 PF00884 Sulfatase JJJ22_17420 PF00593 TonB dependent receptor JJJ22_17420 PF07715 TonB-dependent Receptor Plug Domain JJJ22_17425 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JJJ22_17425 PF00326 Prolyl oligopeptidase family JJJ22_17445 PF03974 Ecotin JJJ22_17450 PF04219 Protein of unknown function, DUF JJJ22_17455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_17455 PF03466 LysR substrate binding domain JJJ22_17460 PF01817 Chorismate mutase type II JJJ22_17460 PF02153 Prephenate dehydrogenase JJJ22_17465 PF00793 DAHP synthetase I family JJJ22_17470 PF03009 Glycerophosphoryl diester phosphodiesterase family JJJ22_17475 PF01266 FAD dependent oxidoreductase JJJ22_17475 PF16901 C-terminal domain of alpha-glycerophosphate oxidase JJJ22_17480 PF00455 DeoR C terminal sensor domain JJJ22_17480 PF08220 DeoR-like helix-turn-helix domain JJJ22_17485 PF07690 Major Facilitator Superfamily JJJ22_17490 PF00230 Major intrinsic protein JJJ22_17495 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JJJ22_17495 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JJJ22_17500 PF03466 LysR substrate binding domain JJJ22_17500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_17520 PF00248 Aldo/keto reductase family JJJ22_17525 PF07690 Major Facilitator Superfamily JJJ22_17535 PF02322 Cytochrome bd terminal oxidase subunit II JJJ22_17540 PF01654 Cytochrome bd terminal oxidase subunit I JJJ22_17545 PF00392 Bacterial regulatory proteins, gntR family JJJ22_17545 PF00155 Aminotransferase class I and II JJJ22_17555 PF04391 Protein of unknown function (DUF533) JJJ22_17565 PF10689 Protein of unknown function (DUF2496) JJJ22_17575 PF03466 LysR substrate binding domain JJJ22_17575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_17585 PF07690 Major Facilitator Superfamily JJJ22_17590 PF00849 RNA pseudouridylate synthase JJJ22_17590 PF01479 S4 domain JJJ22_17595 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JJJ22_17595 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JJJ22_17615 PF00271 Helicase conserved C-terminal domain JJJ22_17615 PF04851 Type III restriction enzyme, res subunit JJJ22_17620 PF00300 Histidine phosphatase superfamily (branch 1) JJJ22_17625 PF03707 Bacterial signalling protein N terminal repeat JJJ22_17625 PF00563 EAL domain JJJ22_17625 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_17640 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JJJ22_17640 PF17944 Arginine decarboxylase C-terminal helical extension JJJ22_17640 PF17810 Arginine decarboxylase helical bundle domain JJJ22_17645 PF07687 Peptidase dimerisation domain JJJ22_17645 PF01546 Peptidase family M20/M25/M40 JJJ22_17660 PF05221 S-adenosyl-L-homocysteine hydrolase JJJ22_17660 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain JJJ22_17670 PF04264 YceI-like domain JJJ22_17675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_17675 PF03466 LysR substrate binding domain JJJ22_17685 PF01268 Formate--tetrahydrofolate ligase JJJ22_17690 PF17200 Single Cache domain 2 JJJ22_17690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJJ22_17690 PF00672 HAMP domain JJJ22_17695 PF01227 GTP cyclohydrolase I JJJ22_17700 PF03454 MoeA C-terminal region (domain IV) JJJ22_17700 PF00994 Probable molybdopterin binding domain JJJ22_17700 PF03453 MoeA N-terminal region (domain I and II) JJJ22_17705 PF00899 ThiF family JJJ22_17710 PF12697 Alpha/beta hydrolase family JJJ22_17715 PF00005 ABC transporter JJJ22_17715 PF03459 TOBE domain JJJ22_17720 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_17730 PF02391 MoaE protein JJJ22_17735 PF02597 ThiS family JJJ22_17740 PF01967 MoaC family JJJ22_17745 PF00994 Probable molybdopterin binding domain JJJ22_17750 PF03264 NapC/NirT cytochrome c family, N-terminal region JJJ22_17755 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) JJJ22_17760 PF12801 4Fe-4S binding domain JJJ22_17760 PF13237 4Fe-4S dicluster domain JJJ22_17765 PF12838 4Fe-4S dicluster domain JJJ22_17765 PF12800 4Fe-4S binding domain JJJ22_17770 PF00384 Molybdopterin oxidoreductase JJJ22_17770 PF01568 Molydopterin dinucleotide binding domain JJJ22_17770 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JJJ22_17770 PF10518 TAT (twin-arginine translocation) pathway signal sequence JJJ22_17780 PF12800 4Fe-4S binding domain JJJ22_17780 PF00037 4Fe-4S binding domain JJJ22_17780 PF13187 4Fe-4S dicluster domain JJJ22_17785 PF06463 Molybdenum Cofactor Synthesis C JJJ22_17785 PF04055 Radical SAM superfamily JJJ22_17790 PF07730 Histidine kinase JJJ22_17790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_17790 PF00672 HAMP domain JJJ22_17790 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term JJJ22_17795 PF00072 Response regulator receiver domain JJJ22_17795 PF00196 Bacterial regulatory proteins, luxR family JJJ22_17810 PF09456 RcsC Alpha-Beta-Loop (ABL) JJJ22_17810 PF00512 His Kinase A (phospho-acceptor) domain JJJ22_17810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_17810 PF00072 Response regulator receiver domain JJJ22_17820 PF01933 Uncharacterised protein family UPF0052 JJJ22_17830 PF13230 Glutamine amidotransferases class-II JJJ22_17835 PF13580 SIS domain JJJ22_17840 PF02770 Acyl-CoA dehydrogenase, middle domain JJJ22_17840 PF09317 Domain of unknown function (DUF1974) JJJ22_17840 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJJ22_17840 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJJ22_17845 PF11849 Domain of unknown function (DUF3369) JJJ22_17855 PF00929 Exonuclease JJJ22_17860 PF00075 RNase H JJJ22_17865 PF08241 Methyltransferase domain JJJ22_17870 PF16123 Hydroxyacylglutathione hydrolase C-terminus JJJ22_17870 PF00753 Metallo-beta-lactamase superfamily JJJ22_17875 PF01476 LysM domain JJJ22_17875 PF01464 Transglycosylase SLT domain JJJ22_17880 PF03372 Endonuclease/Exonuclease/phosphatase family JJJ22_17890 PF03061 Thioesterase superfamily JJJ22_17900 PF00356 Bacterial regulatory proteins, lacI family JJJ22_17905 PF14718 Soluble lytic murein transglycosylase L domain JJJ22_17905 PF01464 Transglycosylase SLT domain JJJ22_17910 PF00563 EAL domain JJJ22_17910 PF03707 Bacterial signalling protein N terminal repeat JJJ22_17910 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_17915 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JJJ22_17935 PF04357 TamB, inner membrane protein subunit of TAM complex JJJ22_17940 PF17243 POTRA domain TamA domain 1 JJJ22_17940 PF07244 Surface antigen variable number repeat JJJ22_17940 PF01103 Surface antigen JJJ22_17955 PF07508 Recombinase JJJ22_17955 PF13408 Recombinase zinc beta ribbon domain JJJ22_17955 PF00239 Resolvase, N terminal domain JJJ22_17965 PF02627 Carboxymuconolactone decarboxylase family JJJ22_17970 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JJJ22_17970 PF00403 Heavy-metal-associated domain JJJ22_17970 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJJ22_17975 PF13416 Bacterial extracellular solute-binding protein JJJ22_17985 PF00005 ABC transporter JJJ22_17990 PF01066 CDP-alcohol phosphatidyltransferase JJJ22_17995 PF13406 Transglycosylase SLT domain JJJ22_18000 PF01047 MarR family JJJ22_18010 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JJJ22_18010 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JJJ22_18010 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JJJ22_18010 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JJJ22_18015 PF03925 SeqA protein C-terminal domain JJJ22_18015 PF17206 SeqA protein N-terminal domain JJJ22_18020 PF00561 alpha/beta hydrolase fold JJJ22_18030 PF01402 Ribbon-helix-helix protein, copG family JJJ22_18035 PF00258 Flavodoxin JJJ22_18045 PF01475 Ferric uptake regulator family JJJ22_18050 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain JJJ22_18050 PF00749 tRNA synthetases class I (E and Q), catalytic domain JJJ22_18055 PF02838 Glycosyl hydrolase family 20, domain 2 JJJ22_18055 PF00728 Glycosyl hydrolase family 20, catalytic domain JJJ22_18055 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain JJJ22_18055 PF03173 Putative carbohydrate binding domain JJJ22_18060 PF00367 phosphotransferase system, EIIB JJJ22_18060 PF02378 Phosphotransferase system, EIIC JJJ22_18060 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JJJ22_18065 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JJJ22_18070 PF01979 Amidohydrolase family JJJ22_18075 PF01047 MarR family JJJ22_18075 PF00480 ROK family JJJ22_18080 PF00884 Sulfatase JJJ22_18080 PF08019 Phosphoethanolamine transferase EptA/EptB JJJ22_18085 PF01709 Transcriptional regulator JJJ22_18090 PF02938 GAD domain JJJ22_18090 PF00152 tRNA synthetases class II (D, K and N) JJJ22_18090 PF01336 OB-fold nucleic acid binding domain JJJ22_18095 PF01904 Protein of unknown function DUF72 JJJ22_18100 PF13649 Methyltransferase domain JJJ22_18105 PF08003 Protein of unknown function (DUF1698) JJJ22_18125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_18125 PF03466 LysR substrate binding domain JJJ22_18130 PF00877 NlpC/P60 family JJJ22_18140 PF00171 Aldehyde dehydrogenase family JJJ22_18145 PF17932 Tetracyclin repressor-like, C-terminal domain JJJ22_18145 PF00440 Bacterial regulatory proteins, tetR family JJJ22_18155 PF00465 Iron-containing alcohol dehydrogenase JJJ22_18160 PF00291 Pyridoxal-phosphate dependent enzyme JJJ22_18180 PF01554 MatE JJJ22_18190 PF04325 Protein of unknown function (DUF465) JJJ22_18210 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg JJJ22_18210 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JJJ22_18210 PF10371 Domain of unknown function JJJ22_18210 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II JJJ22_18210 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase JJJ22_18215 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JJJ22_18215 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JJJ22_18215 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJJ22_18220 PF03476 MOSC N-terminal beta barrel domain JJJ22_18220 PF03473 MOSC domain JJJ22_18220 PF03473 MOSC domain JJJ22_18220 PF03476 MOSC N-terminal beta barrel domain JJJ22_18220 PF00111 2Fe-2S iron-sulfur cluster binding domain JJJ22_18220 PF00111 2Fe-2S iron-sulfur cluster binding domain JJJ22_18225 PF01435 Peptidase family M48 JJJ22_18235 PF12697 Alpha/beta hydrolase family JJJ22_18235 PF08241 Methyltransferase domain JJJ22_18240 PF00155 Aminotransferase class I and II JJJ22_18245 PF04055 Radical SAM superfamily JJJ22_18245 PF06968 Biotin and Thiamin Synthesis associated domain JJJ22_18250 PF00202 Aminotransferase class-III JJJ22_18265 PF01336 OB-fold nucleic acid binding domain JJJ22_18265 PF00152 tRNA synthetases class II (D, K and N) JJJ22_18270 PF03605 Anaerobic c4-dicarboxylate membrane transporter JJJ22_18280 PF07687 Peptidase dimerisation domain JJJ22_18280 PF01546 Peptidase family M20/M25/M40 JJJ22_18285 PF03606 C4-dicarboxylate anaerobic carrier JJJ22_18305 PF00239 Resolvase, N terminal domain JJJ22_18305 PF02796 Helix-turn-helix domain of resolvase JJJ22_18320 PF13408 Recombinase zinc beta ribbon domain JJJ22_18320 PF07508 Recombinase JJJ22_18320 PF00239 Resolvase, N terminal domain JJJ22_18325 PF03960 ArsC family JJJ22_18330 PF07687 Peptidase dimerisation domain JJJ22_18330 PF01546 Peptidase family M20/M25/M40 JJJ22_18335 PF02557 D-alanyl-D-alanine carboxypeptidase JJJ22_18345 PF02080 TrkA-C domain JJJ22_18345 PF03471 Transporter associated domain JJJ22_18345 PF00999 Sodium/hydrogen exchanger family JJJ22_18355 PF01810 LysE type translocator JJJ22_18360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJJ22_18360 PF00672 HAMP domain JJJ22_18365 PF07509 Protein of unknown function (DUF1523) JJJ22_18380 PF01156 Inosine-uridine preferring nucleoside hydrolase JJJ22_18385 PF00849 RNA pseudouridylate synthase JJJ22_18390 PF01048 Phosphorylase superfamily JJJ22_18395 PF00465 Iron-containing alcohol dehydrogenase JJJ22_18400 PF04355 SmpA / OmlA family JJJ22_18405 PF13460 NAD(P)H-binding JJJ22_18410 PF03658 RnfH family Ubiquitin JJJ22_18415 PF03364 Polyketide cyclase / dehydrase and lipid transport JJJ22_18420 PF01668 SmpB protein JJJ22_18450 PF13508 Acetyltransferase (GNAT) domain JJJ22_18470 PF01546 Peptidase family M20/M25/M40 JJJ22_18475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_18475 PF03466 LysR substrate binding domain JJJ22_18480 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region JJJ22_18480 PF01243 Pyridoxamine 5'-phosphate oxidase JJJ22_18495 PF01189 16S rRNA methyltransferase RsmB/F JJJ22_18495 PF01029 NusB family JJJ22_18500 PF00462 Glutaredoxin JJJ22_18505 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JJJ22_18505 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JJJ22_18510 PF04333 MlaA lipoprotein JJJ22_18520 PF03918 Cytochrome C biogenesis protein JJJ22_18525 PF08534 Redoxin JJJ22_18530 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JJJ22_18530 PF01578 Cytochrome C assembly protein JJJ22_18535 PF03100 CcmE JJJ22_18540 PF04995 Heme exporter protein D (CcmD) JJJ22_18545 PF01578 Cytochrome C assembly protein JJJ22_18550 PF03379 CcmB protein JJJ22_18555 PF00005 ABC transporter JJJ22_18565 PF01584 CheW-like domain JJJ22_18575 PF13614 AAA domain JJJ22_18580 PF00691 OmpA family JJJ22_18580 PF13677 Membrane MotB of proton-channel complex MotA/MotB JJJ22_18585 PF01618 MotA/TolQ/ExbB proton channel family JJJ22_18590 PF00072 Response regulator receiver domain JJJ22_18590 PF01339 CheB methylesterase JJJ22_18595 PF02895 Signal transducing histidine kinase, homodimeric domain JJJ22_18595 PF00072 Response regulator receiver domain JJJ22_18595 PF01584 CheW-like domain JJJ22_18595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_18595 PF01627 Hpt domain JJJ22_18600 PF04344 Chemotaxis phosphatase, CheZ JJJ22_18605 PF00072 Response regulator receiver domain JJJ22_18610 PF04542 Sigma-70 region 2 JJJ22_18610 PF04545 Sigma-70, region 4 JJJ22_18610 PF04539 Sigma-70 region 3 JJJ22_18615 PF10609 NUBPL iron-transfer P-loop NTPase JJJ22_18620 PF00448 SRP54-type protein, GTPase domain JJJ22_18625 PF00771 FHIPEP family JJJ22_18630 PF01312 FlhB HrpN YscU SpaS Family JJJ22_18635 PF01311 Bacterial export proteins, family 1 JJJ22_18640 PF01313 Bacterial export proteins, family 3 JJJ22_18645 PF00813 FliP family JJJ22_18650 PF04347 Flagellar biosynthesis protein, FliO JJJ22_18655 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JJJ22_18660 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JJJ22_18660 PF02154 Flagellar motor switch protein FliM JJJ22_18680 PF18269 T3SS EscN ATPase C-terminal domain JJJ22_18680 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JJJ22_18690 PF14842 FliG N-terminal domain JJJ22_18690 PF01706 FliG C-terminal domain JJJ22_18690 PF14841 FliG middle domain JJJ22_18695 PF01514 Secretory protein of YscJ/FliF family JJJ22_18695 PF08345 Flagellar M-ring protein C-terminal JJJ22_18700 PF02049 Flagellar hook-basal body complex protein FliE JJJ22_18715 PF03960 ArsC family JJJ22_18720 PF01758 Sodium Bile acid symporter family JJJ22_18725 PF01022 Bacterial regulatory protein, arsR family JJJ22_18730 PF00072 Response regulator receiver domain JJJ22_18735 PF04055 Radical SAM superfamily JJJ22_18735 PF18693 TRAM domain JJJ22_18735 PF00919 Uncharacterized protein family UPF0004 JJJ22_18740 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJJ22_18745 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_18750 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_18750 PF12911 N-terminal TM domain of oligopeptide transport permease C JJJ22_18755 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJJ22_18755 PF00005 ABC transporter JJJ22_18760 PF00005 ABC transporter JJJ22_18760 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJJ22_18770 PF01869 BadF/BadG/BcrA/BcrD ATPase family JJJ22_18775 PF00728 Glycosyl hydrolase family 20, catalytic domain JJJ22_18775 PF02838 Glycosyl hydrolase family 20, domain 2 JJJ22_18780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJJ22_18780 PF08447 PAS fold JJJ22_18795 PF01396 Topoisomerase DNA binding C4 zinc finger JJJ22_18795 PF08272 Topoisomerase I zinc-ribbon-like JJJ22_18795 PF01131 DNA topoisomerase JJJ22_18795 PF01751 Toprim domain JJJ22_18800 PF04996 Succinylarginine dihydrolase JJJ22_18805 PF08496 Peptidase family S49 N-terminal JJJ22_18805 PF01343 Peptidase family S49 JJJ22_18810 PF00106 short chain dehydrogenase JJJ22_18815 PF03466 LysR substrate binding domain JJJ22_18815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_18820 PF07690 Major Facilitator Superfamily JJJ22_18825 PF00155 Aminotransferase class I and II JJJ22_18835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_18835 PF03466 LysR substrate binding domain JJJ22_18840 PF00709 Adenylosuccinate synthetase JJJ22_18845 PF01161 Phosphatidylethanolamine-binding protein JJJ22_18855 PF01204 Trehalase JJJ22_18860 PF00579 tRNA synthetases class I (W and Y) JJJ22_18865 PF08525 Opacity-associated protein A N-terminal motif JJJ22_18865 PF01551 Peptidase family M23 JJJ22_18865 PF01476 LysM domain JJJ22_18870 PF03702 Anhydro-N-acetylmuramic acid kinase JJJ22_18885 PF01042 Endoribonuclease L-PSP JJJ22_18890 PF02779 Transketolase, pyrimidine binding domain JJJ22_18890 PF02780 Transketolase, C-terminal domain JJJ22_18890 PF00456 Transketolase, thiamine diphosphate binding domain JJJ22_18895 PF02773 S-adenosylmethionine synthetase, C-terminal domain JJJ22_18895 PF02772 S-adenosylmethionine synthetase, central domain JJJ22_18895 PF00438 S-adenosylmethionine synthetase, N-terminal domain JJJ22_18900 PF17283 SprT-like zinc ribbon domain JJJ22_18900 PF10263 SprT-like family JJJ22_18905 PF04231 Endonuclease I JJJ22_18910 PF04452 RNA methyltransferase JJJ22_18915 PF02951 Prokaryotic glutathione synthetase, N-terminal domain JJJ22_18915 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain JJJ22_18920 PF02622 Uncharacterized ACR, COG1678 JJJ22_18925 PF03652 Holliday junction resolvase JJJ22_18930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_18930 PF03466 LysR substrate binding domain JJJ22_18935 PF07690 Major Facilitator Superfamily JJJ22_18940 PF00144 Beta-lactamase JJJ22_18945 PF01235 Sodium:alanine symporter family JJJ22_18950 PF00923 Transaldolase/Fructose-6-phosphate aldolase JJJ22_18965 PF03167 Uracil DNA glycosylase superfamily JJJ22_18985 PF01228 Glycine radical JJJ22_18990 PF00375 Sodium:dicarboxylate symporter family JJJ22_18995 PF00793 DAHP synthetase I family JJJ22_19000 PF13369 Transglutaminase-like superfamily JJJ22_19010 PF13847 Methyltransferase domain JJJ22_19010 PF17827 PrmC N-terminal domain JJJ22_19015 PF03462 PCRF domain JJJ22_19015 PF00472 RF-1 domain JJJ22_19020 PF01488 Shikimate / quinate 5-dehydrogenase JJJ22_19020 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain JJJ22_19020 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain JJJ22_19025 PF03550 Outer membrane lipoprotein LolB JJJ22_19030 PF08544 GHMP kinases C terminal JJJ22_19030 PF00288 GHMP kinases N terminal domain JJJ22_19040 PF14572 Phosphoribosyl synthetase-associated domain JJJ22_19040 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JJJ22_19045 PF01195 Peptidyl-tRNA hydrolase JJJ22_19050 PF06071 Protein of unknown function (DUF933) JJJ22_19050 PF01926 50S ribosome-binding GTPase JJJ22_19090 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JJJ22_19090 PF01348 Type II intron maturase JJJ22_19100 PF01348 Type II intron maturase JJJ22_19100 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JJJ22_19110 PF02080 TrkA-C domain JJJ22_19110 PF03600 Citrate transporter JJJ22_19115 PF04266 ASCH domain JJJ22_19120 PF07859 alpha/beta hydrolase fold JJJ22_19130 PF07690 Major Facilitator Superfamily JJJ22_19135 PF13419 Haloacid dehalogenase-like hydrolase JJJ22_19150 PF00171 Aldehyde dehydrogenase family JJJ22_19155 PF04958 Arginine N-succinyltransferase beta subunit JJJ22_19160 PF00202 Aminotransferase class-III JJJ22_19165 PF00117 Glutamine amidotransferase class-I JJJ22_19175 PF00579 tRNA synthetases class I (W and Y) JJJ22_19180 PF13419 Haloacid dehalogenase-like hydrolase JJJ22_19185 PF00834 Ribulose-phosphate 3 epimerase family JJJ22_19190 PF02086 D12 class N6 adenine-specific DNA methyltransferase JJJ22_19195 PF05036 Sporulation related domain JJJ22_19200 PF01761 3-dehydroquinate synthase JJJ22_19205 PF01202 Shikimate kinase JJJ22_19210 PF07660 Secretin and TonB N terminus short domain JJJ22_19210 PF03958 Bacterial type II/III secretion system short domain JJJ22_19210 PF00263 Bacterial type II and III secretion system protein JJJ22_19210 PF11741 AMIN domain JJJ22_19220 PF04350 Pilus assembly protein, PilO JJJ22_19230 PF11104 Type IV pilus assembly protein PilM; JJJ22_19235 PF17092 Penicillin-binding protein OB-like domain JJJ22_19235 PF00905 Penicillin binding protein transpeptidase domain JJJ22_19235 PF00912 Transglycosylase JJJ22_19240 PF03466 LysR substrate binding domain JJJ22_19240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_19255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_19255 PF03466 LysR substrate binding domain JJJ22_19270 PF01476 LysM domain JJJ22_19270 PF08525 Opacity-associated protein A N-terminal motif JJJ22_19270 PF01551 Peptidase family M23 JJJ22_19280 PF12794 Mechanosensitive ion channel inner membrane domain 1 JJJ22_19280 PF00924 Mechanosensitive ion channel JJJ22_19280 PF12795 Mechanosensitive ion channel porin domain JJJ22_19285 PF03009 Glycerophosphoryl diester phosphodiesterase family JJJ22_19290 PF00672 HAMP domain JJJ22_19290 PF02743 Cache domain JJJ22_19290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJJ22_19295 PF00890 FAD binding domain JJJ22_19295 PF02910 Fumarate reductase flavoprotein C-term JJJ22_19300 PF13085 2Fe-2S iron-sulfur cluster binding domain JJJ22_19300 PF13183 4Fe-4S dicluster domain JJJ22_19305 PF02300 Fumarate reductase subunit C JJJ22_19310 PF02313 Fumarate reductase subunit D JJJ22_19325 PF06224 Winged helix DNA-binding domain JJJ22_19340 PF00501 AMP-binding enzyme JJJ22_19350 PF00106 short chain dehydrogenase JJJ22_19360 PF00486 Transcriptional regulatory protein, C terminal JJJ22_19360 PF00072 Response regulator receiver domain JJJ22_19365 PF08521 Two-component sensor kinase N-terminal JJJ22_19365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJJ22_19365 PF00512 His Kinase A (phospho-acceptor) domain JJJ22_19375 PF08443 RimK-like ATP-grasp domain JJJ22_19375 PF18030 RimK PreATP-grasp domain JJJ22_19380 PF00478 IMP dehydrogenase / GMP reductase domain JJJ22_19390 PF09285 Elongation factor P, C-terminal JJJ22_19390 PF01132 Elongation factor P (EF-P) OB domain JJJ22_19390 PF08207 Elongation factor P (EF-P) KOW-like domain JJJ22_19395 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_19400 PF09383 NIL domain JJJ22_19400 PF00005 ABC transporter JJJ22_19405 PF03180 NLPA lipoprotein JJJ22_19410 PF14226 non-haem dioxygenase in morphine synthesis N-terminal JJJ22_19410 PF03171 2OG-Fe(II) oxygenase superfamily JJJ22_19420 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JJJ22_19420 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JJJ22_19430 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_19430 PF17158 Membrane-associated sensor, integral membrane domain JJJ22_19440 PF17151 Periplasmic sensor domain JJJ22_19440 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_19445 PF13419 Haloacid dehalogenase-like hydrolase JJJ22_19455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_19455 PF03466 LysR substrate binding domain JJJ22_19460 PF00857 Isochorismatase family JJJ22_19465 PF01494 FAD binding domain JJJ22_19470 PF00919 Uncharacterized protein family UPF0004 JJJ22_19470 PF01938 TRAM domain JJJ22_19470 PF04055 Radical SAM superfamily JJJ22_19475 PF02562 PhoH-like protein JJJ22_19480 PF02130 Uncharacterized protein family UPF0054 JJJ22_19485 PF00571 CBS domain JJJ22_19485 PF03471 Transporter associated domain JJJ22_19490 PF00795 Carbon-nitrogen hydrolase JJJ22_19495 PF07295 Zinc-ribbon containing domain JJJ22_19500 PF00133 tRNA synthetases class I (I, L, M and V) JJJ22_19500 PF08264 Anticodon-binding domain of tRNA JJJ22_19500 PF13603 Leucyl-tRNA synthetase, Domain 2 JJJ22_19525 PF01467 Cytidylyltransferase-like JJJ22_19535 PF02590 Predicted SPOUT methyltransferase JJJ22_19540 PF00905 Penicillin binding protein transpeptidase domain JJJ22_19540 PF03717 Penicillin-binding Protein dimerisation domain JJJ22_19545 PF01098 Cell cycle protein JJJ22_19550 PF13406 Transglycosylase SLT domain JJJ22_19555 PF05036 Sporulation related domain JJJ22_19555 PF03330 Lytic transglycolase JJJ22_19560 PF07943 Penicillin-binding protein 5, C-terminal domain JJJ22_19560 PF00768 D-alanyl-D-alanine carboxypeptidase JJJ22_19565 PF04359 Protein of unknown function (DUF493) JJJ22_19570 PF03099 Biotin/lipoate A/B protein ligase family JJJ22_19575 PF04055 Radical SAM superfamily JJJ22_19575 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family JJJ22_19585 PF02508 Rnf-Nqr subunit, membrane protein JJJ22_19600 PF13411 MerR HTH family regulatory protein JJJ22_19605 PF01368 DHH family JJJ22_19605 PF02272 DHHA1 domain JJJ22_19605 PF17768 RecJ OB domain JJJ22_19615 PF01741 Large-conductance mechanosensitive channel, MscL JJJ22_19620 PF02899 Phage integrase, N-terminal SAM-like domain JJJ22_19620 PF00589 Phage integrase family JJJ22_19625 PF00258 Flavodoxin JJJ22_19630 PF01523 Putative modulator of DNA gyrase JJJ22_19635 PF01523 Putative modulator of DNA gyrase JJJ22_19645 PF17969 L,D-transpeptidase C-terminal domain JJJ22_19645 PF03734 L,D-transpeptidase catalytic domain JJJ22_19650 PF01136 Peptidase family U32 JJJ22_19650 PF16325 Peptidase family U32 C-terminal domain JJJ22_19655 PF12838 4Fe-4S dicluster domain JJJ22_19660 PF06476 Protein of unknown function (DUF1090) JJJ22_19665 PF02635 DsrE/DsrF-like family JJJ22_19670 PF07690 Major Facilitator Superfamily JJJ22_19675 PF01138 3' exoribonuclease family, domain 1 JJJ22_19675 PF03725 3' exoribonuclease family, domain 2 JJJ22_19675 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JJJ22_19675 PF00575 S1 RNA binding domain JJJ22_19675 PF00013 KH domain JJJ22_19680 PF00312 Ribosomal protein S15 JJJ22_19685 PF16198 tRNA pseudouridylate synthase B C-terminal domain JJJ22_19685 PF01509 TruB family pseudouridylate synthase (N terminal domain) JJJ22_19685 PF09157 Pseudouridine synthase II TruB, C-terminal JJJ22_19690 PF02033 Ribosome-binding factor A JJJ22_19695 PF11987 Translation-initiation factor 2 JJJ22_19695 PF00009 Elongation factor Tu GTP binding domain JJJ22_19695 PF08364 Bacterial translation initiation factor IF-2 associated region JJJ22_19695 PF04760 Translation initiation factor IF-2, N-terminal region JJJ22_19700 PF13184 NusA-like KH domain JJJ22_19700 PF00575 S1 RNA binding domain JJJ22_19700 PF08529 NusA N-terminal domain JJJ22_19705 PF02576 RimP N-terminal domain JJJ22_19705 PF17384 RimP C-terminal SH3 domain JJJ22_19720 PF03840 Preprotein translocase SecG subunit JJJ22_19725 PF00121 Triosephosphate isomerase JJJ22_19730 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JJJ22_19730 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JJJ22_19730 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JJJ22_19730 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JJJ22_19735 PF00809 Pterin binding enzyme JJJ22_19740 PF17862 AAA+ lid domain JJJ22_19740 PF01434 Peptidase family M41 JJJ22_19740 PF00004 ATPase family associated with various cellular activities (AAA) JJJ22_19740 PF06480 FtsH Extracellular JJJ22_19745 PF01728 FtsJ-like methyltransferase JJJ22_19750 PF01985 CRS1 / YhbY (CRM) domain JJJ22_19760 PF03449 Transcription elongation factor, N-terminal JJJ22_19760 PF01272 Transcription elongation factor, GreA/GreB, C-term JJJ22_19765 PF13677 Membrane MotB of proton-channel complex MotA/MotB JJJ22_19765 PF00691 OmpA family JJJ22_19770 PF01618 MotA/TolQ/ExbB proton channel family JJJ22_19775 PF02609 Exonuclease VII small subunit JJJ22_19780 PF00348 Polyprenyl synthetase JJJ22_19785 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JJJ22_19785 PF02779 Transketolase, pyrimidine binding domain JJJ22_19785 PF02780 Transketolase, C-terminal domain JJJ22_19790 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_19790 PF12911 N-terminal TM domain of oligopeptide transport permease C JJJ22_19795 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_19800 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJJ22_19805 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJJ22_19805 PF00005 ABC transporter JJJ22_19810 PF04608 Phosphatidylglycerophosphatase A JJJ22_19815 PF00586 AIR synthase related protein, N-terminal domain JJJ22_19815 PF02769 AIR synthase related protein, C-terminal domain JJJ22_19820 PF01029 NusB family JJJ22_19825 PF00885 6,7-dimethyl-8-ribityllumazine synthase JJJ22_19830 PF00925 GTP cyclohydrolase II JJJ22_19830 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JJJ22_19835 PF00677 Lumazine binding domain JJJ22_19840 PF01872 RibD C-terminal domain JJJ22_19840 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JJJ22_19845 PF03477 ATP cone domain JJJ22_19855 PF00464 Serine hydroxymethyltransferase JJJ22_19865 PF02613 Nitrate reductase delta subunit JJJ22_19875 PF00563 EAL domain JJJ22_19875 PF03707 Bacterial signalling protein N terminal repeat JJJ22_19875 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_19880 PF16177 Acetyl-coenzyme A synthetase N-terminus JJJ22_19880 PF00501 AMP-binding enzyme JJJ22_19880 PF13193 AMP-binding enzyme C-terminal domain JJJ22_19885 PF01220 Dehydroquinase class II JJJ22_19890 PF00364 Biotin-requiring enzyme JJJ22_19895 PF00289 Biotin carboxylase, N-terminal domain JJJ22_19895 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JJJ22_19895 PF02785 Biotin carboxylase C-terminal domain JJJ22_19900 PF06196 Protein of unknown function (DUF997) JJJ22_19905 PF00474 Sodium:solute symporter family JJJ22_19910 PF00367 phosphotransferase system, EIIB JJJ22_19910 PF02378 Phosphotransferase system, EIIC JJJ22_19910 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JJJ22_19915 PF03466 LysR substrate binding domain JJJ22_19915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_19920 PF08240 Alcohol dehydrogenase GroES-like domain JJJ22_19920 PF00107 Zinc-binding dehydrogenase JJJ22_19930 PF00132 Bacterial transferase hexapeptide (six repeats) JJJ22_19930 PF12464 Maltose acetyltransferase JJJ22_19935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJJ22_19935 PF02743 Cache domain JJJ22_19935 PF00672 HAMP domain JJJ22_19940 PF00881 Nitroreductase family JJJ22_19945 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JJJ22_19945 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJJ22_19950 PF01343 Peptidase family S49 JJJ22_19965 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JJJ22_19965 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JJJ22_19970 PF07023 Protein of unknown function (DUF1315) JJJ22_19975 PF00710 Asparaginase, N-terminal JJJ22_19975 PF17763 Glutaminase/Asparaginase C-terminal domain JJJ22_19980 PF03616 Sodium/glutamate symporter JJJ22_19985 PF02743 Cache domain JJJ22_19985 PF00672 HAMP domain JJJ22_19985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJJ22_19995 PF01336 OB-fold nucleic acid binding domain JJJ22_19995 PF00152 tRNA synthetases class II (D, K and N) JJJ22_20000 PF02567 Phenazine biosynthesis-like protein JJJ22_20005 PF00175 Oxidoreductase NAD-binding domain JJJ22_20005 PF00258 Flavodoxin JJJ22_20005 PF00667 FAD binding domain JJJ22_20010 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JJJ22_20010 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JJJ22_20015 PF01507 Phosphoadenosine phosphosulfate reductase family JJJ22_20020 PF04069 Substrate binding domain of ABC-type glycine betaine transport system JJJ22_20025 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_20030 PF00571 CBS domain JJJ22_20030 PF00005 ABC transporter JJJ22_20035 PF00186 Dihydrofolate reductase JJJ22_20040 PF12821 Threonine/Serine exporter, ThrE JJJ22_20045 PF06738 Putative threonine/serine exporter JJJ22_20060 PF00994 Probable molybdopterin binding domain JJJ22_20075 PF00194 Eukaryotic-type carbonic anhydrase JJJ22_20080 PF04227 Indigoidine synthase A like protein JJJ22_20085 PF00294 pfkB family carbohydrate kinase JJJ22_20090 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JJJ22_20090 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJJ22_20090 PF13806 Rieske-like [2Fe-2S] domain JJJ22_20090 PF18267 Rubredoxin NAD+ reductase C-terminal domain JJJ22_20090 PF04324 BFD-like [2Fe-2S] binding domain JJJ22_20090 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JJJ22_20095 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JJJ22_20095 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJJ22_20095 PF18267 Rubredoxin NAD+ reductase C-terminal domain JJJ22_20095 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JJJ22_20095 PF04324 BFD-like [2Fe-2S] binding domain JJJ22_20095 PF13806 Rieske-like [2Fe-2S] domain JJJ22_20100 PF00005 ABC transporter JJJ22_20105 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_20110 PF00005 ABC transporter JJJ22_20120 PF14824 Sirohaem biosynthesis protein central JJJ22_20120 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JJJ22_20120 PF10414 Sirohaem synthase dimerisation region JJJ22_20125 PF04324 BFD-like [2Fe-2S] binding domain JJJ22_20125 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JJJ22_20125 PF00384 Molybdopterin oxidoreductase JJJ22_20125 PF01568 Molydopterin dinucleotide binding domain JJJ22_20140 PF00582 Universal stress protein family JJJ22_20150 PF00171 Aldehyde dehydrogenase family JJJ22_20155 PF00696 Amino acid kinase family JJJ22_20155 PF01472 PUA domain JJJ22_20160 PF07417 Sigma factor-binding transcriptional regulator Crl JJJ22_20165 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) JJJ22_20170 PF00156 Phosphoribosyl transferase domain JJJ22_20175 PF01546 Peptidase family M20/M25/M40 JJJ22_20175 PF07687 Peptidase dimerisation domain JJJ22_20180 PF00005 ABC transporter JJJ22_20180 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJJ22_20185 PF00005 ABC transporter JJJ22_20185 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJJ22_20190 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJJ22_20195 PF12911 N-terminal TM domain of oligopeptide transport permease C JJJ22_20195 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_20200 PF00528 Binding-protein-dependent transport system inner membrane component JJJ22_20205 PF07715 TonB-dependent Receptor Plug Domain JJJ22_20205 PF00593 TonB dependent receptor JJJ22_20215 PF01618 MotA/TolQ/ExbB proton channel family JJJ22_20220 PF01618 MotA/TolQ/ExbB proton channel family JJJ22_20225 PF02472 Biopolymer transport protein ExbD/TolR JJJ22_20250 PF12323 Helix-turn-helix domain JJJ22_20255 PF01385 Probable transposase JJJ22_20255 PF07282 Putative transposase DNA-binding domain JJJ22_20255 PF12323 Helix-turn-helix domain JJJ22_20260 PF12323 Helix-turn-helix domain JJJ22_20260 PF07282 Putative transposase DNA-binding domain JJJ22_20260 PF01385 Probable transposase JJJ22_20300 PF00749 tRNA synthetases class I (E and Q), catalytic domain JJJ22_20305 PF00749 tRNA synthetases class I (E and Q), catalytic domain JJJ22_20310 PF00672 HAMP domain JJJ22_20310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJJ22_20320 PF00313 'Cold-shock' DNA-binding domain JJJ22_20360 PF00929 Exonuclease JJJ22_20365 PF03193 RsgA GTPase JJJ22_20370 PF02666 Phosphatidylserine decarboxylase JJJ22_20375 PF09905 DNA-binding protein VF530 JJJ22_20395 PF00563 EAL domain JJJ22_20395 PF00990 Diguanylate cyclase, GGDEF domain JJJ22_20395 PF03707 Bacterial signalling protein N terminal repeat JJJ22_20400 PF06877 Regulator of ribonuclease activity B JJJ22_20420 PF00561 alpha/beta hydrolase fold JJJ22_20425 PF00664 ABC transporter transmembrane region JJJ22_20425 PF00005 ABC transporter JJJ22_20430 PF06004 Bacterial protein of unknown function (DUF903) JJJ22_20440 PF04960 Glutaminase JJJ22_20445 PF04320 Protein with unknown function (DUF469) JJJ22_20450 PF02390 Putative methyltransferase JJJ22_20455 PF01483 Proprotein convertase P-domain JJJ22_20455 PF04389 Peptidase family M28 JJJ22_20460 PF00155 Aminotransferase class I and II JJJ22_20465 PF00563 EAL domain JJJ22_20465 PF12792 CSS motif domain associated with EAL JJJ22_20470 PF08338 Domain of unknown function (DUF1731) JJJ22_20470 PF01370 NAD dependent epimerase/dehydratase family JJJ22_20480 PF00005 ABC transporter JJJ22_20485 PF13472 GDSL-like Lipase/Acylhydrolase family JJJ22_20490 PF00072 Response regulator receiver domain JJJ22_20490 PF01584 CheW-like domain JJJ22_20495 PF00267 Gram-negative porin JJJ22_20500 PF00478 IMP dehydrogenase / GMP reductase domain JJJ22_20500 PF00571 CBS domain JJJ22_20505 PF12848 ABC transporter JJJ22_20505 PF00005 ABC transporter JJJ22_20515 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ JJJ22_20520 PF03466 LysR substrate binding domain JJJ22_20520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_20525 PF02525 Flavodoxin-like fold JJJ22_20560 PF13411 MerR HTH family regulatory protein JJJ22_20570 PF00474 Sodium:solute symporter family JJJ22_20575 PF17969 L,D-transpeptidase C-terminal domain JJJ22_20575 PF03734 L,D-transpeptidase catalytic domain JJJ22_20580 PF00924 Mechanosensitive ion channel JJJ22_20585 PF00871 Acetokinase family JJJ22_20590 PF04074 YhcH/YjgK/YiaL JJJ22_20600 PF13302 Acetyltransferase (GNAT) domain JJJ22_20605 PF13302 Acetyltransferase (GNAT) domain JJJ22_20610 PF04151 Bacterial pre-peptidase C-terminal domain JJJ22_20610 PF02868 Thermolysin metallopeptidase, alpha-helical domain JJJ22_20610 PF01447 Thermolysin metallopeptidase, catalytic domain JJJ22_20610 PF03413 Peptidase propeptide and YPEB domain JJJ22_20610 PF07504 Fungalysin/Thermolysin Propeptide Motif JJJ22_20615 PF03466 LysR substrate binding domain JJJ22_20615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJJ22_20620 PF07690 Major Facilitator Superfamily JJJ22_20695 PF02899 Phage integrase, N-terminal SAM-like domain JJJ22_20695 PF00589 Phage integrase family JJJ22_20730 PF17191 RecG wedge domain JJJ22_20730 PF00271 Helicase conserved C-terminal domain JJJ22_20730 PF00270 DEAD/DEAH box helicase JJJ22_20750 PF00005 ABC transporter JJJ22_20880 PF07484 Phage Tail Collar Domain JJJ22_20880 PF08400 Prophage tail fibre N-terminal JJJ22_20880 PF03335 Phage tail fibre repeat JJJ22_20910 PF17209 Hfq protein JJJ22_20930 PF01807 CHC2 zinc finger JJJ22_20930 PF10410 DnaB-helicase binding domain of primase JJJ22_20930 PF08275 DNA primase catalytic core, N-terminal domain JJJ22_20960 PF13614 AAA domain JJJ22_20975 PF06213 Cobalamin biosynthesis protein CobT JJJ22_20975 PF11775 Cobalamin biosynthesis protein CobT VWA domain JJJ22_20990 PF02811 PHP domain JJJ22_20990 PF14579 Helix-hairpin-helix motif JJJ22_20990 PF07733 Bacterial DNA polymerase III alpha NTPase domain JJJ22_20990 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JJJ22_21010 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JJJ22_21010 PF01367 5'-3' exonuclease, C-terminal SAM fold JJJ22_21010 PF00476 DNA polymerase family A JJJ22_21020 PF00154 recA bacterial DNA recombination protein JJJ22_21040 PF00216 Bacterial DNA-binding protein JJJ22_21080 PF13610 DDE domain JJJ22_21090 PF00809 Pterin binding enzyme JJJ22_21095 PF00893 Small Multidrug Resistance protein JJJ22_21100 PF00186 Dihydrofolate reductase JJJ22_21115 PF13495 Phage integrase, N-terminal SAM-like domain JJJ22_21115 PF00589 Phage integrase family JJJ22_21150 PF13476 AAA domain JJJ22_21180 PF00317 Ribonucleotide reductase, all-alpha domain JJJ22_21180 PF02867 Ribonucleotide reductase, barrel domain JJJ22_21180 PF03477 ATP cone domain JJJ22_21190 PF00303 Thymidylate synthase JJJ22_21195 PF00186 Dihydrofolate reductase JJJ22_21245 PF01051 Initiator Replication protein