locus-tag class description JC965_00015 PF00140 Sigma-70 factor, region 1.2 JC965_00015 PF04539 Sigma-70 region 3 JC965_00015 PF04545 Sigma-70, region 4 JC965_00015 PF03979 Sigma-70 factor, region 1.1 JC965_00015 PF04546 Sigma-70, non-essential region JC965_00015 PF04542 Sigma-70 region 2 JC965_00020 PF10410 DnaB-helicase binding domain of primase JC965_00020 PF08278 DNA primase DnaG DnaB-binding JC965_00020 PF08275 DNA primase catalytic core, N-terminal domain JC965_00020 PF01807 CHC2 zinc finger JC965_00025 PF09424 Yqey-like protein JC965_00030 PF01165 Ribosomal protein S21 JC965_00035 PF00814 Glycoprotease family JC965_00040 PF00140 Sigma-70 factor, region 1.2 JC965_00040 PF04542 Sigma-70 region 2 JC965_00040 PF04539 Sigma-70 region 3 JC965_00040 PF04545 Sigma-70, region 4 JC965_00045 PF01476 LysM domain JC965_00045 PF01551 Peptidase family M23 JC965_00050 PF09335 SNARE associated Golgi protein JC965_00060 PF01975 Survival protein SurE JC965_00065 PF01142 tRNA pseudouridine synthase D (TruD) JC965_00070 PF02542 YgbB family JC965_00075 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JC965_00080 PF04977 Septum formation initiator JC965_00085 PF03952 Enolase, N-terminal domain JC965_00085 PF00113 Enolase, C-terminal TIM barrel domain JC965_00090 PF00117 Glutamine amidotransferase class-I JC965_00090 PF06418 CTP synthase N-terminus JC965_00095 PF03819 MazG nucleotide pyrophosphohydrolase domain JC965_00100 PF13291 ACT domain JC965_00100 PF04607 Region found in RelA / SpoT proteins JC965_00100 PF02824 TGS domain JC965_00105 PF05958 tRNA (Uracil-5-)-methyltransferase JC965_00105 PF01938 TRAM domain JC965_00110 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JC965_00110 PF00072 Response regulator receiver domain JC965_00110 PF00672 HAMP domain JC965_00110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_00110 PF00512 His Kinase A (phospho-acceptor) domain JC965_00110 PF01627 Hpt domain JC965_00115 PF07308 Protein of unknown function (DUF1456) JC965_00120 PF01510 N-acetylmuramoyl-L-alanine amidase JC965_00125 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ JC965_00130 PF02565 Recombination protein O C terminal JC965_00130 PF11967 Recombination protein O N terminal JC965_00135 PF07650 KH domain JC965_00135 PF01926 50S ribosome-binding GTPase JC965_00140 PF14622 Ribonuclease-III-like JC965_00140 PF00035 Double-stranded RNA binding motif JC965_00145 PF10502 Signal peptidase, peptidase S26 JC965_00150 PF00009 Elongation factor Tu GTP binding domain JC965_00150 PF03144 Elongation factor Tu domain 2 JC965_00150 PF06421 GTP-binding protein LepA C-terminus JC965_00150 PF00679 Elongation factor G C-terminus JC965_00160 PF03888 MucB/RseB N-terminal domain JC965_00160 PF17188 MucB/RseB C-terminal domain JC965_00165 PF03873 Anti sigma-E protein RseA, C-terminal domain JC965_00165 PF03872 Anti sigma-E protein RseA, N-terminal domain JC965_00170 PF08281 Sigma-70, region 4 JC965_00170 PF04542 Sigma-70 region 2 JC965_00175 PF02910 Fumarate reductase flavoprotein C-term JC965_00175 PF00890 FAD binding domain JC965_00185 PF03937 Flavinator of succinate dehydrogenase JC965_00190 PF01571 Aminomethyltransferase folate-binding domain JC965_00195 PF03466 LysR substrate binding domain JC965_00195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_00210 PF03091 CutA1 divalent ion tolerance protein JC965_00215 PF11412 Disulphide bond corrector protein DsbC JC965_00215 PF02683 Cytochrome C biogenesis protein transmembrane region JC965_00225 PF01266 FAD dependent oxidoreductase JC965_00230 PF01116 Fructose-bisphosphate aldolase class-II JC965_00235 PF00162 Phosphoglycerate kinase JC965_00240 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JC965_00240 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JC965_00245 PF00480 ROK family JC965_00250 PF01208 Uroporphyrinogen decarboxylase (URO-D) JC965_00255 PF09297 NADH pyrophosphatase zinc ribbon domain JC965_00255 PF00293 NUDIX domain JC965_00260 PF08239 Bacterial SH3 domain JC965_00265 PF00027 Cyclic nucleotide-binding domain JC965_00265 PF00520 Ion transport protein JC965_00270 PF02743 Cache domain JC965_00270 PF00672 HAMP domain JC965_00270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JC965_00280 PF08335 GlnD PII-uridylyltransferase JC965_00280 PF03710 Glutamate-ammonia ligase adenylyltransferase JC965_00295 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JC965_00295 PF00326 Prolyl oligopeptidase family JC965_00300 PF00291 Pyridoxal-phosphate dependent enzyme JC965_00305 PF00528 Binding-protein-dependent transport system inner membrane component JC965_00310 PF00528 Binding-protein-dependent transport system inner membrane component JC965_00315 PF00005 ABC transporter JC965_00320 PF00497 Bacterial extracellular solute-binding proteins, family 3 JC965_00325 PF13194 Domain of unknown function (DUF4010) JC965_00330 PF12464 Maltose acetyltransferase JC965_00330 PF14602 Hexapeptide repeat of succinyl-transferase JC965_00360 PF14552 Tautomerase enzyme JC965_00370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_00370 PF03466 LysR substrate binding domain JC965_00375 PF14698 Argininosuccinate lyase C-terminal JC965_00375 PF00206 Lyase JC965_00380 PF00764 Arginosuccinate synthase JC965_00385 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JC965_00385 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JC965_00390 PF00696 Amino acid kinase family JC965_00395 PF01118 Semialdehyde dehydrogenase, NAD binding domain JC965_00395 PF02774 Semialdehyde dehydrogenase, dimerisation domain JC965_00400 PF07687 Peptidase dimerisation domain JC965_00400 PF01546 Peptidase family M20/M25/M40 JC965_00405 PF00311 Phosphoenolpyruvate carboxylase JC965_00410 PF00563 EAL domain JC965_00410 PF00990 Diguanylate cyclase, GGDEF domain JC965_00410 PF13426 PAS domain JC965_00410 PF08448 PAS fold JC965_00410 PF05231 MASE1 JC965_00410 PF08447 PAS fold JC965_00415 PF04073 Aminoacyl-tRNA editing domain JC965_00435 PF00392 Bacterial regulatory proteins, gntR family JC965_00435 PF00155 Aminotransferase class I and II JC965_00450 PF03466 LysR substrate binding domain JC965_00450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_00455 PF03788 LrgA family JC965_00460 PF04172 LrgB-like family JC965_00465 PF00696 Amino acid kinase family JC965_00465 PF00742 Homoserine dehydrogenase JC965_00465 PF03447 Homoserine dehydrogenase, NAD binding domain JC965_00470 PF01053 Cys/Met metabolism PLP-dependent enzyme JC965_00475 PF01340 Met Apo-repressor, MetJ JC965_00485 PF01588 Putative tRNA binding domain JC965_00490 PF03222 Tryptophan/tyrosine permease family JC965_00495 PF00459 Inositol monophosphatase family JC965_00500 PF00293 NUDIX domain JC965_00505 PF13419 Haloacid dehalogenase-like hydrolase JC965_00510 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JC965_00515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_00515 PF03466 LysR substrate binding domain JC965_00520 PF00579 tRNA synthetases class I (W and Y) JC965_00520 PF01479 S4 domain JC965_00525 PF00196 Bacterial regulatory proteins, luxR family JC965_00530 PF01203 Type II secretion system (T2SS), protein N JC965_00535 PF04612 Type II secretion system (T2SS), protein M JC965_00540 PF05134 Type II secretion system (T2SS), protein L JC965_00540 PF12693 GspL periplasmic domain JC965_00545 PF03934 Type II secretion system (T2SS), protein K JC965_00550 PF07963 Prokaryotic N-terminal methylation motif JC965_00550 PF11612 Type II secretion system (T2SS), protein J JC965_00555 PF02501 Type II secretion system (T2SS), protein I JC965_00555 PF07963 Prokaryotic N-terminal methylation motif JC965_00560 PF07963 Prokaryotic N-terminal methylation motif JC965_00560 PF12019 Type II transport protein GspH JC965_00565 PF07963 Prokaryotic N-terminal methylation motif JC965_00565 PF08334 Type II secretion system (T2SS), protein G JC965_00570 PF00482 Type II secretion system (T2SS), protein F JC965_00575 PF00437 Type II/IV secretion system protein JC965_00580 PF03958 Bacterial type II/III secretion system short domain JC965_00580 PF00263 Bacterial type II and III secretion system protein JC965_00585 PF11356 Type II secretion system protein C JC965_00590 PF01479 S4 domain JC965_00595 PF01430 Hsp33 protein JC965_00600 PF01293 Phosphoenolpyruvate carboxykinase JC965_00605 PF00392 Bacterial regulatory proteins, gntR family JC965_00610 PF01321 Creatinase/Prolidase N-terminal domain JC965_00610 PF00557 Metallopeptidase family M24 JC965_00620 PF05433 Glycine zipper 2TM domain JC965_00625 PF01928 CYTH domain JC965_00630 PF01865 Protein of unknown function DUF47 JC965_00635 PF01384 Phosphate transporter family JC965_00640 PF01743 Poly A polymerase head domain JC965_00640 PF01966 HD domain JC965_00640 PF12627 Probable RNA and SrmB- binding site of polymerase A JC965_00645 PF13401 AAA domain JC965_00645 PF01471 Putative peptidoglycan binding domain JC965_00650 PF16537 Type II secretion system protein B JC965_00655 PF00633 Helix-hairpin-helix motif JC965_00655 PF00730 HhH-GPD superfamily base excision DNA repair protein JC965_00655 PF14815 NUDIX domain JC965_00655 PF10576 Iron-sulfur binding domain of endonuclease III JC965_00660 PF04362 Bacterial Fe(2+) trafficking JC965_00665 PF01464 Transglycosylase SLT domain JC965_00665 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain JC965_00675 PF00657 GDSL-like Lipase/Acylhydrolase JC965_00680 PF01389 OmpA-like transmembrane domain JC965_00680 PF00691 OmpA family JC965_00685 PF03886 ABC-type transport auxiliary lipoprotein component JC965_00690 PF02470 MlaD protein JC965_00695 PF04403 Paraquat-inducible protein A JC965_00700 PF17209 Hfq protein JC965_00705 PF13419 Haloacid dehalogenase-like hydrolase JC965_00710 PF00563 EAL domain JC965_00710 PF01590 GAF domain JC965_00710 PF00990 Diguanylate cyclase, GGDEF domain JC965_00710 PF00360 Phytochrome region JC965_00715 PF00701 Dihydrodipicolinate synthetase family JC965_00720 PF08468 Methyltransferase small domain N-terminal JC965_00720 PF05175 Methyltransferase small domain JC965_00725 PF00483 Nucleotidyl transferase JC965_00730 PF00534 Glycosyl transferases group 1 JC965_00730 PF08323 Starch synthase catalytic domain JC965_00770 PF03553 Na+/H+ antiporter family JC965_00785 PF00005 ABC transporter JC965_00785 PF08402 TOBE domain JC965_00790 PF00528 Binding-protein-dependent transport system inner membrane component JC965_00795 PF00528 Binding-protein-dependent transport system inner membrane component JC965_00800 PF00171 Aldehyde dehydrogenase family JC965_00805 PF01040 UbiA prenyltransferase family JC965_00830 PF00510 Cytochrome c oxidase subunit III JC965_00835 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 JC965_00840 PF00115 Cytochrome C and Quinol oxidase polypeptide I JC965_00845 PF02790 Cytochrome C oxidase subunit II, transmembrane domain JC965_00845 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JC965_00850 PF17176 tRNA-binding domain JC965_00850 PF05127 Helicase JC965_00850 PF13718 GNAT acetyltransferase 2 JC965_00850 PF08351 Domain of unknown function (DUF1726) JC965_00860 PF04324 BFD-like [2Fe-2S] binding domain JC965_00865 PF00210 Ferritin-like domain JC965_00870 PF02142 MGS-like domain JC965_00885 PF00710 Asparaginase, N-terminal JC965_00885 PF17763 Glutaminase/Asparaginase C-terminal domain JC965_00900 PF00356 Bacterial regulatory proteins, lacI family JC965_00905 PF00367 phosphotransferase system, EIIB JC965_00905 PF02378 Phosphotransferase system, EIIC JC965_00910 PF00128 Alpha amylase, catalytic domain JC965_00910 PF11941 Domain of unknown function (DUF3459) JC965_00915 PF12464 Maltose acetyltransferase JC965_00915 PF14602 Hexapeptide repeat of succinyl-transferase JC965_00920 PF01037 Lrp/AsnC ligand binding domain JC965_00925 PF00892 EamA-like transporter family JC965_00950 PF04222 Protein of unknown function (DUF416) JC965_00955 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JC965_00960 PF01476 LysM domain JC965_00960 PF08525 Opacity-associated protein A N-terminal motif JC965_00960 PF01551 Peptidase family M23 JC965_00980 PF01297 Zinc-uptake complex component A periplasmic JC965_00985 PF00005 ABC transporter JC965_00990 PF00950 ABC 3 transport family JC965_00995 PF03466 LysR substrate binding domain JC965_00995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_01005 PF03167 Uracil DNA glycosylase superfamily JC965_01010 PF00892 EamA-like transporter family JC965_01015 PF01541 GIY-YIG catalytic domain JC965_01030 PF04012 PspA/IM30 family JC965_01035 PF01553 Acyltransferase JC965_01055 PF00578 AhpC/TSA family JC965_01065 PF00226 DnaJ domain JC965_01065 PF01556 DnaJ C terminal domain JC965_01065 PF00684 DnaJ central domain JC965_01120 PF06738 Putative threonine/serine exporter JC965_01125 PF12821 Threonine/Serine exporter, ThrE JC965_01130 PF00186 Dihydrofolate reductase JC965_01135 PF00005 ABC transporter JC965_01135 PF00571 CBS domain JC965_01140 PF00528 Binding-protein-dependent transport system inner membrane component JC965_01145 PF04069 Substrate binding domain of ABC-type glycine betaine transport system JC965_01150 PF01507 Phosphoadenosine phosphosulfate reductase family JC965_01155 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JC965_01155 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JC965_01160 PF00175 Oxidoreductase NAD-binding domain JC965_01160 PF00667 FAD binding domain JC965_01160 PF00258 Flavodoxin JC965_01165 PF02567 Phenazine biosynthesis-like protein JC965_01170 PF00152 tRNA synthetases class II (D, K and N) JC965_01170 PF01336 OB-fold nucleic acid binding domain JC965_01185 PF03616 Sodium/glutamate symporter JC965_01190 PF00710 Asparaginase, N-terminal JC965_01190 PF17763 Glutaminase/Asparaginase C-terminal domain JC965_01195 PF07023 Protein of unknown function (DUF1315) JC965_01200 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JC965_01200 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JC965_01215 PF01343 Peptidase family S49 JC965_01220 PF07992 Pyridine nucleotide-disulphide oxidoreductase JC965_01220 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JC965_01225 PF00881 Nitroreductase family JC965_01230 PF00672 HAMP domain JC965_01230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JC965_01230 PF02743 Cache domain JC965_01235 PF12464 Maltose acetyltransferase JC965_01235 PF00132 Bacterial transferase hexapeptide (six repeats) JC965_01245 PF00107 Zinc-binding dehydrogenase JC965_01245 PF08240 Alcohol dehydrogenase GroES-like domain JC965_01250 PF03466 LysR substrate binding domain JC965_01250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_01255 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JC965_01255 PF00367 phosphotransferase system, EIIB JC965_01255 PF02378 Phosphotransferase system, EIIC JC965_01260 PF00474 Sodium:solute symporter family JC965_01265 PF06196 Protein of unknown function (DUF997) JC965_01270 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JC965_01270 PF00289 Biotin carboxylase, N-terminal domain JC965_01270 PF02785 Biotin carboxylase C-terminal domain JC965_01275 PF00364 Biotin-requiring enzyme JC965_01280 PF01220 Dehydroquinase class II JC965_01285 PF00501 AMP-binding enzyme JC965_01285 PF13193 AMP-binding enzyme C-terminal domain JC965_01285 PF16177 Acetyl-coenzyme A synthetase N-terminus JC965_01290 PF03707 Bacterial signalling protein N terminal repeat JC965_01290 PF00990 Diguanylate cyclase, GGDEF domain JC965_01290 PF00563 EAL domain JC965_01300 PF02613 Nitrate reductase delta subunit JC965_01310 PF00464 Serine hydroxymethyltransferase JC965_01320 PF03477 ATP cone domain JC965_01325 PF01872 RibD C-terminal domain JC965_01325 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JC965_01330 PF00677 Lumazine binding domain JC965_01335 PF00925 GTP cyclohydrolase II JC965_01335 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JC965_01340 PF00885 6,7-dimethyl-8-ribityllumazine synthase JC965_01345 PF01029 NusB family JC965_01350 PF02769 AIR synthase related protein, C-terminal domain JC965_01350 PF00586 AIR synthase related protein, N-terminal domain JC965_01355 PF04608 Phosphatidylglycerophosphatase A JC965_01360 PF00005 ABC transporter JC965_01360 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JC965_01365 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JC965_01370 PF00528 Binding-protein-dependent transport system inner membrane component JC965_01375 PF12911 N-terminal TM domain of oligopeptide transport permease C JC965_01375 PF00528 Binding-protein-dependent transport system inner membrane component JC965_01380 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JC965_01380 PF02780 Transketolase, C-terminal domain JC965_01380 PF02779 Transketolase, pyrimidine binding domain JC965_01385 PF00348 Polyprenyl synthetase JC965_01390 PF02609 Exonuclease VII small subunit JC965_01395 PF01618 MotA/TolQ/ExbB proton channel family JC965_01400 PF00691 OmpA family JC965_01400 PF13677 Membrane MotB of proton-channel complex MotA/MotB JC965_01405 PF03449 Transcription elongation factor, N-terminal JC965_01405 PF01272 Transcription elongation factor, GreA/GreB, C-term JC965_01415 PF01985 CRS1 / YhbY (CRM) domain JC965_01420 PF01728 FtsJ-like methyltransferase JC965_01425 PF17862 AAA+ lid domain JC965_01425 PF01434 Peptidase family M41 JC965_01425 PF06480 FtsH Extracellular JC965_01425 PF00004 ATPase family associated with various cellular activities (AAA) JC965_01430 PF00809 Pterin binding enzyme JC965_01435 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JC965_01435 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JC965_01435 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JC965_01435 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JC965_01440 PF00121 Triosephosphate isomerase JC965_01445 PF03840 Preprotein translocase SecG subunit JC965_01460 PF02576 RimP N-terminal domain JC965_01460 PF17384 RimP C-terminal SH3 domain JC965_01465 PF08529 NusA N-terminal domain JC965_01465 PF13184 NusA-like KH domain JC965_01465 PF00575 S1 RNA binding domain JC965_01470 PF11987 Translation-initiation factor 2 JC965_01470 PF00009 Elongation factor Tu GTP binding domain JC965_01470 PF04760 Translation initiation factor IF-2, N-terminal region JC965_01470 PF08364 Bacterial translation initiation factor IF-2 associated region JC965_01475 PF02033 Ribosome-binding factor A JC965_01480 PF01509 TruB family pseudouridylate synthase (N terminal domain) JC965_01480 PF09157 Pseudouridine synthase II TruB, C-terminal JC965_01480 PF16198 tRNA pseudouridylate synthase B C-terminal domain JC965_01485 PF00312 Ribosomal protein S15 JC965_01490 PF03725 3' exoribonuclease family, domain 2 JC965_01490 PF00575 S1 RNA binding domain JC965_01490 PF00013 KH domain JC965_01490 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JC965_01490 PF01138 3' exoribonuclease family, domain 1 JC965_01495 PF07690 Major Facilitator Superfamily JC965_01500 PF02635 DsrE/DsrF-like family JC965_01505 PF06476 Protein of unknown function (DUF1090) JC965_01510 PF12838 4Fe-4S dicluster domain JC965_01515 PF16325 Peptidase family U32 C-terminal domain JC965_01515 PF01136 Peptidase family U32 JC965_01520 PF17969 L,D-transpeptidase C-terminal domain JC965_01520 PF03734 L,D-transpeptidase catalytic domain JC965_01530 PF01523 Putative modulator of DNA gyrase JC965_01535 PF01523 Putative modulator of DNA gyrase JC965_01540 PF00258 Flavodoxin JC965_01545 PF02899 Phage integrase, N-terminal SAM-like domain JC965_01545 PF00589 Phage integrase family JC965_01550 PF01741 Large-conductance mechanosensitive channel, MscL JC965_01560 PF01368 DHH family JC965_01560 PF02272 DHHA1 domain JC965_01560 PF17768 RecJ OB domain JC965_01565 PF13411 MerR HTH family regulatory protein JC965_01580 PF02508 Rnf-Nqr subunit, membrane protein JC965_01590 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family JC965_01590 PF04055 Radical SAM superfamily JC965_01595 PF03099 Biotin/lipoate A/B protein ligase family JC965_01600 PF04359 Protein of unknown function (DUF493) JC965_01605 PF00768 D-alanyl-D-alanine carboxypeptidase JC965_01605 PF07943 Penicillin-binding protein 5, C-terminal domain JC965_01610 PF03330 Lytic transglycolase JC965_01610 PF05036 Sporulation related domain JC965_01615 PF13406 Transglycosylase SLT domain JC965_01620 PF01098 Cell cycle protein JC965_01625 PF00905 Penicillin binding protein transpeptidase domain JC965_01625 PF03717 Penicillin-binding Protein dimerisation domain JC965_01630 PF02590 Predicted SPOUT methyltransferase JC965_01640 PF01467 Cytidylyltransferase-like JC965_01655 PF13603 Leucyl-tRNA synthetase, Domain 2 JC965_01655 PF00133 tRNA synthetases class I (I, L, M and V) JC965_01655 PF08264 Anticodon-binding domain of tRNA JC965_01660 PF07295 Zinc-ribbon containing domain JC965_01665 PF00795 Carbon-nitrogen hydrolase JC965_01670 PF00571 CBS domain JC965_01670 PF03471 Transporter associated domain JC965_01675 PF02130 Uncharacterized protein family UPF0054 JC965_01680 PF02562 PhoH-like protein JC965_01685 PF00919 Uncharacterized protein family UPF0004 JC965_01685 PF04055 Radical SAM superfamily JC965_01685 PF01938 TRAM domain JC965_01690 PF01494 FAD binding domain JC965_01695 PF00857 Isochorismatase family JC965_01700 PF03466 LysR substrate binding domain JC965_01700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_01710 PF13419 Haloacid dehalogenase-like hydrolase JC965_01715 PF00990 Diguanylate cyclase, GGDEF domain JC965_01715 PF17151 Periplasmic sensor domain JC965_01725 PF17158 Membrane-associated sensor, integral membrane domain JC965_01725 PF00990 Diguanylate cyclase, GGDEF domain JC965_01735 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JC965_01735 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JC965_01745 PF03171 2OG-Fe(II) oxygenase superfamily JC965_01745 PF14226 non-haem dioxygenase in morphine synthesis N-terminal JC965_01750 PF03180 NLPA lipoprotein JC965_01755 PF00005 ABC transporter JC965_01755 PF09383 NIL domain JC965_01760 PF00528 Binding-protein-dependent transport system inner membrane component JC965_01765 PF01132 Elongation factor P (EF-P) OB domain JC965_01765 PF09285 Elongation factor P, C-terminal JC965_01765 PF08207 Elongation factor P (EF-P) KOW-like domain JC965_01775 PF00478 IMP dehydrogenase / GMP reductase domain JC965_01780 PF18030 RimK PreATP-grasp domain JC965_01780 PF08443 RimK-like ATP-grasp domain JC965_01785 PF08521 Two-component sensor kinase N-terminal JC965_01785 PF00512 His Kinase A (phospho-acceptor) domain JC965_01785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_01790 PF00072 Response regulator receiver domain JC965_01790 PF00486 Transcriptional regulatory protein, C terminal JC965_01800 PF00106 short chain dehydrogenase JC965_01810 PF00501 AMP-binding enzyme JC965_01820 PF13847 Methyltransferase domain JC965_01825 PF06224 Winged helix DNA-binding domain JC965_01840 PF02313 Fumarate reductase subunit D JC965_01845 PF02300 Fumarate reductase subunit C JC965_01850 PF13183 4Fe-4S dicluster domain JC965_01850 PF13085 2Fe-2S iron-sulfur cluster binding domain JC965_01855 PF02910 Fumarate reductase flavoprotein C-term JC965_01855 PF00890 FAD binding domain JC965_01860 PF02743 Cache domain JC965_01860 PF00672 HAMP domain JC965_01860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JC965_01875 PF01196 Ribosomal protein L17 JC965_01880 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JC965_01880 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JC965_01880 PF01000 RNA polymerase Rpb3/RpoA insert domain JC965_01885 PF00163 Ribosomal protein S4/S9 N-terminal domain JC965_01885 PF01479 S4 domain JC965_01890 PF00411 Ribosomal protein S11 JC965_01895 PF00416 Ribosomal protein S13/S18 JC965_01900 PF00444 Ribosomal protein L36 JC965_01905 PF00344 SecY translocase JC965_01910 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JC965_01915 PF00327 Ribosomal protein L30p/L7e JC965_01920 PF03719 Ribosomal protein S5, C-terminal domain JC965_01920 PF00333 Ribosomal protein S5, N-terminal domain JC965_01925 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JC965_01930 PF00347 Ribosomal protein L6 JC965_01935 PF00410 Ribosomal protein S8 JC965_01940 PF00253 Ribosomal protein S14p/S29e JC965_01945 PF00673 ribosomal L5P family C-terminus JC965_01945 PF00281 Ribosomal protein L5 JC965_01950 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JC965_01950 PF00467 KOW motif JC965_01955 PF00238 Ribosomal protein L14p/L23e JC965_01960 PF00366 Ribosomal protein S17 JC965_01965 PF00831 Ribosomal L29 protein JC965_01970 PF00252 Ribosomal protein L16p/L10e JC965_01975 PF00189 Ribosomal protein S3, C-terminal domain JC965_01975 PF07650 KH domain JC965_01980 PF00237 Ribosomal protein L22p/L17e JC965_01985 PF00203 Ribosomal protein S19 JC965_01990 PF03947 Ribosomal Proteins L2, C-terminal domain JC965_01990 PF00181 Ribosomal Proteins L2, RNA binding domain JC965_01995 PF00276 Ribosomal protein L23 JC965_02000 PF00573 Ribosomal protein L4/L1 family JC965_02005 PF00297 Ribosomal protein L3 JC965_02010 PF00338 Ribosomal protein S10p/S20e JC965_02020 PF00512 His Kinase A (phospho-acceptor) domain JC965_02020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_02020 PF00672 HAMP domain JC965_02025 PF00486 Transcriptional regulatory protein, C terminal JC965_02025 PF00072 Response regulator receiver domain JC965_02030 PF03449 Transcription elongation factor, N-terminal JC965_02030 PF01272 Transcription elongation factor, GreA/GreB, C-term JC965_02035 PF17674 HHH domain JC965_02035 PF00575 S1 RNA binding domain JC965_02035 PF09371 Tex-like protein N-terminal domain JC965_02035 PF16921 Tex protein YqgF-like domain JC965_02050 PF00561 alpha/beta hydrolase fold JC965_02055 PF00156 Phosphoribosyl transferase domain JC965_02060 PF01521 Iron-sulphur cluster biosynthesis JC965_02060 PF01106 NifU-like domain JC965_02065 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JC965_02065 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JC965_02070 PF02556 Preprotein translocase subunit SecB JC965_02075 PF00581 Rhodanese-like domain JC965_02080 PF06415 BPG-independent PGAM N-terminus (iPGM_N) JC965_02080 PF01676 Metalloenzyme superfamily JC965_02085 PF01551 Peptidase family M23 JC965_02095 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JC965_02095 PF00356 Bacterial regulatory proteins, lacI family JC965_02110 PF01081 KDPG and KHG aldolase JC965_02115 PF00920 Dehydratase family JC965_02120 PF01202 Shikimate kinase JC965_02125 PF02447 GntP family permease JC965_02130 PF13091 PLD-like domain JC965_02135 PF00271 Helicase conserved C-terminal domain JC965_02135 PF00270 DEAD/DEAH box helicase JC965_02135 PF17191 RecG wedge domain JC965_02145 PF09500 Putative thioesterase (yiiD_Cterm) JC965_02145 PF00583 Acetyltransferase (GNAT) family JC965_02155 PF02580 D-Tyr-tRNA(Tyr) deacylase JC965_02160 PF03631 Virulence factor BrkB JC965_02165 PF03144 Elongation factor Tu domain 2 JC965_02165 PF00009 Elongation factor Tu GTP binding domain JC965_02165 PF00679 Elongation factor G C-terminus JC965_02170 PF00120 Glutamine synthetase, catalytic domain JC965_02170 PF03951 Glutamine synthetase, beta-Grasp domain JC965_02180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_02180 PF00512 His Kinase A (phospho-acceptor) domain JC965_02180 PF00989 PAS fold JC965_02185 PF00072 Response regulator receiver domain JC965_02185 PF00158 Sigma-54 interaction domain JC965_02185 PF02954 Bacterial regulatory protein, Fis family JC965_02190 PF00962 Adenosine/AMP deaminase JC965_02195 PF04055 Radical SAM superfamily JC965_02195 PF06969 HemN C-terminal domain JC965_02200 PF10675 Protein of unknown function (DUF2489) JC965_02205 PF04220 Der GTPase activator (YihI) JC965_02210 PF00034 Cytochrome c JC965_02215 PF01926 50S ribosome-binding GTPase JC965_02220 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JC965_02220 PF01488 Shikimate / quinate 5-dehydrogenase JC965_02220 PF08501 Shikimate dehydrogenase substrate binding domain JC965_02225 PF01218 Coproporphyrinogen III oxidase JC965_02230 PF01300 Telomere recombination JC965_02235 PF01396 Topoisomerase DNA binding C4 zinc finger JC965_02240 PF04361 Protein of unknown function (DUF494) JC965_02245 PF17782 DprA winged helix domain JC965_02245 PF02481 DNA recombination-mediator protein A JC965_02255 PF01327 Polypeptide deformylase JC965_02260 PF02911 Formyl transferase, C-terminal domain JC965_02260 PF00551 Formyl transferase JC965_02265 PF01029 NusB family JC965_02265 PF01189 16S rRNA methyltransferase RsmB/F JC965_02270 PF02254 TrkA-N domain JC965_02270 PF02080 TrkA-C domain JC965_02275 PF02386 Cation transport protein JC965_02280 PF02646 RmuC family JC965_02295 PF02082 Transcriptional regulator JC965_02300 PF00294 pfkB family carbohydrate kinase JC965_02305 PF03466 LysR substrate binding domain JC965_02305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_02310 PF02540 NAD synthase JC965_02310 PF00958 GMP synthase C terminal domain JC965_02310 PF00117 Glutamine amidotransferase class-I JC965_02315 PF00171 Aldehyde dehydrogenase family JC965_02320 PF00202 Aminotransferase class-III JC965_02325 PF01381 Helix-turn-helix JC965_02325 PF07883 Cupin domain JC965_02330 PF00171 Aldehyde dehydrogenase family JC965_02340 PF00892 EamA-like transporter family JC965_02345 PF12833 Helix-turn-helix domain JC965_02350 PF01810 LysE type translocator JC965_02355 PF06206 CpeT/CpcT family (DUF1001) JC965_02375 PF14001 YdfZ protein JC965_02395 PF03466 LysR substrate binding domain JC965_02395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_02405 PF02463 RecF/RecN/SMC N terminal domain JC965_02410 PF00145 C-5 cytosine-specific DNA methylase JC965_02415 PF13361 UvrD-like helicase C-terminal domain JC965_02415 PF00580 UvrD/REP helicase N-terminal domain JC965_02420 PF02608 ABC transporter substrate-binding protein PnrA-like JC965_02425 PF00005 ABC transporter JC965_02430 PF02653 Branched-chain amino acid transport system / permease component JC965_02435 PF02653 Branched-chain amino acid transport system / permease component JC965_02440 PF03466 LysR substrate binding domain JC965_02440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_02445 PF00107 Zinc-binding dehydrogenase JC965_02445 PF08240 Alcohol dehydrogenase GroES-like domain JC965_02450 PF00756 Putative esterase JC965_02465 PF12867 DinB superfamily JC965_02465 PF03781 Sulfatase-modifying factor enzyme 1 JC965_02470 PF13593 SBF-like CPA transporter family (DUF4137) JC965_02475 PF13520 Amino acid permease JC965_02480 PF01588 Putative tRNA binding domain JC965_02485 PF13520 Amino acid permease JC965_02490 PF04074 YhcH/YjgK/YiaL JC965_02495 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JC965_02495 PF00703 Glycosyl hydrolases family 2 JC965_02495 PF02837 Glycosyl hydrolases family 2, sugar binding domain JC965_02495 PF16353 Domain of unknown function(DUF4981) JC965_02495 PF02929 Beta galactosidase small chain JC965_02500 PF00356 Bacterial regulatory proteins, lacI family JC965_02525 PF00704 Glycosyl hydrolases family 18 JC965_02525 PF08329 Chitinase A, N-terminal domain JC965_02530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_02530 PF00512 His Kinase A (phospho-acceptor) domain JC965_02530 PF00989 PAS fold JC965_02535 PF12832 MFS_1 like family JC965_02540 PF07715 TonB-dependent Receptor Plug Domain JC965_02540 PF00593 TonB dependent receptor JC965_02560 PF01243 Pyridoxamine 5'-phosphate oxidase JC965_02565 PF06228 Haem utilisation ChuX/HutX JC965_02575 PF01032 FecCD transport family JC965_02580 PF00005 ABC transporter JC965_02590 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JC965_02590 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JC965_02590 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JC965_02595 PF01370 NAD dependent epimerase/dehydratase family JC965_02600 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase JC965_02610 PF00535 Glycosyl transferase family 2 JC965_02615 PF01464 Transglycosylase SLT domain JC965_02620 PF00005 ABC transporter JC965_02620 PF12848 ABC transporter JC965_02630 PF00860 Permease family JC965_02635 PF05099 Tellurite resistance protein TerB JC965_02635 PF00226 DnaJ domain JC965_02640 PF00483 Nucleotidyl transferase JC965_02645 PF01636 Phosphotransferase enzyme family JC965_02650 PF04453 LPS transport system D JC965_02650 PF03968 OstA-like protein JC965_02655 PF00639 PPIC-type PPIASE domain JC965_02655 PF09312 SurA N-terminal domain JC965_02660 PF04166 Pyridoxal phosphate biosynthetic protein PdxA JC965_02665 PF00398 Ribosomal RNA adenine dimethylase JC965_02670 PF04379 ApaG domain JC965_02675 PF00149 Calcineurin-like phosphoesterase JC965_02685 PF00296 Luciferase-like monooxygenase JC965_02695 PF07670 Nucleoside recognition JC965_02700 PF01018 GTP1/OBG JC965_02700 PF01926 50S ribosome-binding GTPase JC965_02705 PF01016 Ribosomal L27 protein JC965_02710 PF00829 Ribosomal prokaryotic L21 protein JC965_02715 PF00348 Polyprenyl synthetase JC965_02720 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) JC965_02725 PF01145 SPFH domain / Band 7 family JC965_02730 PF12221 Bacterial membrane protein N terminal JC965_02730 PF01145 SPFH domain / Band 7 family JC965_02735 PF01926 50S ribosome-binding GTPase JC965_02735 PF13167 GTP-binding GTPase N-terminal JC965_02735 PF16360 GTP-binding GTPase Middle Region JC965_02740 PF17209 Hfq protein JC965_02750 PF01119 DNA mismatch repair protein, C-terminal domain JC965_02750 PF08676 MutL C terminal dimerisation domain JC965_02755 PF01520 N-acetylmuramoyl-L-alanine amidase JC965_02760 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JC965_02765 PF03853 YjeF-related protein N-terminus JC965_02765 PF01256 Carbohydrate kinase JC965_02770 PF08331 Domain of unknown function (DUF1730) JC965_02775 PF00480 ROK family JC965_02785 PF09383 NIL domain JC965_02785 PF00005 ABC transporter JC965_02790 PF00528 Binding-protein-dependent transport system inner membrane component JC965_02795 PF03180 NLPA lipoprotein JC965_02800 PF02357 Transcription termination factor nusG JC965_02805 PF13426 PAS domain JC965_02805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JC965_02805 PF08447 PAS fold JC965_02810 PF00563 EAL domain JC965_02810 PF00990 Diguanylate cyclase, GGDEF domain JC965_02810 PF03707 Bacterial signalling protein N terminal repeat JC965_02815 PF00512 His Kinase A (phospho-acceptor) domain JC965_02815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_02815 PF00072 Response regulator receiver domain JC965_02815 PF09456 RcsC Alpha-Beta-Loop (ABL) JC965_02825 PF01966 HD domain JC965_02825 PF13286 Phosphohydrolase-associated domain JC965_02830 PF00989 PAS fold JC965_02830 PF01627 Hpt domain JC965_02830 PF18415 Histidine kinase receptor ArcB trans-membrane domain JC965_02830 PF00512 His Kinase A (phospho-acceptor) domain JC965_02830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_02830 PF00072 Response regulator receiver domain JC965_02850 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) JC965_02855 PF03466 LysR substrate binding domain JC965_02855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_02865 PF01259 SAICAR synthetase JC965_02870 PF06804 NlpB/DapX lipoprotein JC965_02875 PF00701 Dihydrodipicolinate synthetase family JC965_02880 PF01842 ACT domain JC965_02885 PF00578 AhpC/TSA family JC965_02890 PF03887 YfbU domain JC965_02895 PF04217 Protein of unknown function, DUF412 JC965_02900 PF00871 Acetokinase family JC965_02905 PF01515 Phosphate acetyl/butaryl transferase JC965_02905 PF07085 DRTGG domain JC965_02910 PF10369 Small subunit of acetolactate synthase JC965_02915 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JC965_02915 PF00205 Thiamine pyrophosphate enzyme, central domain JC965_02915 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JC965_02930 PF01569 PAP2 superfamily JC965_02940 PF00682 HMGL-like JC965_02940 PF08502 LeuA allosteric (dimerisation) domain JC965_02945 PF00180 Isocitrate/isopropylmalate dehydrogenase JC965_02950 PF00330 Aconitase family (aconitate hydratase) JC965_02955 PF00694 Aconitase C-terminal domain JC965_02975 PF00528 Binding-protein-dependent transport system inner membrane component JC965_02980 PF00005 ABC transporter JC965_02990 PF13638 PIN domain JC965_02990 PF02562 PhoH-like protein JC965_03000 PF02867 Ribonucleotide reductase, barrel domain JC965_03000 PF00317 Ribonucleotide reductase, all-alpha domain JC965_03000 PF08343 Ribonucleotide reductase N-terminal JC965_03035 PF00999 Sodium/hydrogen exchanger family JC965_03035 PF02254 TrkA-N domain JC965_03040 PF02525 Flavodoxin-like fold JC965_03045 PF03466 LysR substrate binding domain JC965_03045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_03050 PF00106 short chain dehydrogenase JC965_03065 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JC965_03065 PF00326 Prolyl oligopeptidase family JC965_03070 PF16868 NMT1-like family JC965_03085 PF07947 YhhN family JC965_03090 PF07690 Major Facilitator Superfamily JC965_03095 PF13533 Biotin-lipoyl like JC965_03100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_03100 PF03466 LysR substrate binding domain JC965_03110 PF00375 Sodium:dicarboxylate symporter family JC965_03115 PF10678 Protein of unknown function (DUF2492) JC965_03120 PF01914 MarC family integral membrane protein JC965_03125 PF03466 LysR substrate binding domain JC965_03125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_03130 PF02416 mttA/Hcf106 family JC965_03140 PF00497 Bacterial extracellular solute-binding proteins, family 3 JC965_03140 PF01464 Transglycosylase SLT domain JC965_03150 PF13091 PLD-like domain JC965_03160 PF00440 Bacterial regulatory proteins, tetR family JC965_03165 PF07226 Protein of unknown function (DUF1422) JC965_03180 PF02881 SRP54-type protein, helical bundle domain JC965_03180 PF00448 SRP54-type protein, GTPase domain JC965_03185 PF00005 ABC transporter JC965_03190 PF18075 FtsX extracellular domain JC965_03195 PF04545 Sigma-70, region 4 JC965_03195 PF00140 Sigma-70 factor, region 1.2 JC965_03195 PF04542 Sigma-70 region 2 JC965_03200 PF00484 Carbonic anhydrase JC965_03205 PF07702 UTRA domain JC965_03205 PF00392 Bacterial regulatory proteins, gntR family JC965_03210 PF01979 Amidohydrolase family JC965_03215 PF00491 Arginase family JC965_03220 PF01175 Urocanase Rossmann-like domain JC965_03220 PF17391 Urocanase N-terminal domain JC965_03220 PF17392 Urocanase C-terminal domain JC965_03225 PF00221 Aromatic amino acid lyase JC965_03230 PF01699 Sodium/calcium exchanger protein JC965_03235 PF12792 CSS motif domain associated with EAL JC965_03235 PF00563 EAL domain JC965_03270 PF00263 Bacterial type II and III secretion system protein JC965_03270 PF03958 Bacterial type II/III secretion system short domain JC965_03290 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JC965_03290 PF00437 Type II/IV secretion system protein JC965_03295 PF00482 Type II secretion system (T2SS), protein F JC965_03305 PF07963 Prokaryotic N-terminal methylation motif JC965_03310 PF07963 Prokaryotic N-terminal methylation motif JC965_03315 PF00114 Pilin (bacterial filament) JC965_03315 PF07963 Prokaryotic N-terminal methylation motif JC965_03345 PF04085 rod shape-determining protein MreC JC965_03350 PF04093 rod shape-determining protein MreD JC965_03355 PF02545 Maf-like protein JC965_03360 PF10150 Ribonuclease E/G family JC965_03360 PF00575 S1 RNA binding domain JC965_03365 PF13116 Protein of unknown function JC965_03365 PF13502 AsmA-like C-terminal region JC965_03370 PF00795 Carbon-nitrogen hydrolase JC965_03375 PF01523 Putative modulator of DNA gyrase JC965_03385 PF01914 MarC family integral membrane protein JC965_03390 PF07690 Major Facilitator Superfamily JC965_03400 PF04228 Putative neutral zinc metallopeptidase JC965_03420 PF00999 Sodium/hydrogen exchanger family JC965_03425 PF02574 Homocysteine S-methyltransferase JC965_03425 PF02965 Vitamin B12 dependent methionine synthase, activation domain JC965_03425 PF02607 B12 binding domain JC965_03425 PF00809 Pterin binding enzyme JC965_03425 PF02310 B12 binding domain JC965_03435 PF08443 RimK-like ATP-grasp domain JC965_03435 PF18030 RimK PreATP-grasp domain JC965_03440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_03445 PF00072 Response regulator receiver domain JC965_03445 PF00486 Transcriptional regulatory protein, C terminal JC965_03460 PF13667 ThiC-associated domain JC965_03460 PF01964 Radical SAM ThiC family JC965_03465 PF02581 Thiamine monophosphate synthase JC965_03470 PF00899 ThiF family JC965_03480 PF05690 Thiazole biosynthesis protein ThiG JC965_03485 PF06968 Biotin and Thiamin Synthesis associated domain JC965_03485 PF04055 Radical SAM superfamily JC965_03500 PF11842 Domain of unknown function (DUF3362) JC965_03500 PF04055 Radical SAM superfamily JC965_03500 PF08497 Radical SAM N-terminal JC965_03505 PF00873 AcrB/AcrD/AcrF family JC965_03515 PF00990 Diguanylate cyclase, GGDEF domain JC965_03515 PF17158 Membrane-associated sensor, integral membrane domain JC965_03520 PF01734 Patatin-like phospholipase JC965_03540 PF01389 OmpA-like transmembrane domain JC965_03540 PF00691 OmpA family JC965_03545 PF01389 OmpA-like transmembrane domain JC965_03545 PF00691 OmpA family JC965_03550 PF00691 OmpA family JC965_03550 PF01389 OmpA-like transmembrane domain JC965_03555 PF03949 Malic enzyme, NAD binding domain JC965_03555 PF00390 Malic enzyme, N-terminal domain JC965_03560 PF12833 Helix-turn-helix domain JC965_03565 PF01554 MatE JC965_03570 PF10692 Protein of unknown function (DUF2498) JC965_03575 PF00990 Diguanylate cyclase, GGDEF domain JC965_03575 PF00072 Response regulator receiver domain JC965_03580 PF00860 Permease family JC965_03590 PF01235 Sodium:alanine symporter family JC965_03595 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JC965_03595 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JC965_03600 PF01699 Sodium/calcium exchanger protein JC965_03605 PF08534 Redoxin JC965_03610 PF00293 NUDIX domain JC965_03620 PF00005 ABC transporter JC965_03625 PF00528 Binding-protein-dependent transport system inner membrane component JC965_03630 PF00528 Binding-protein-dependent transport system inner membrane component JC965_03635 PF00497 Bacterial extracellular solute-binding proteins, family 3 JC965_03650 PF00005 ABC transporter JC965_03655 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JC965_03655 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JC965_03675 PF03932 CutC family JC965_03680 PF00480 ROK family JC965_03690 PF01435 Peptidase family M48 JC965_03695 PF12849 PBP superfamily domain JC965_03700 PF11808 Phosphate regulon sensor protein PhoR JC965_03700 PF00989 PAS fold JC965_03700 PF00512 His Kinase A (phospho-acceptor) domain JC965_03700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_03705 PF00486 Transcriptional regulatory protein, C terminal JC965_03705 PF00072 Response regulator receiver domain JC965_03715 PF07694 5TMR of 5TMR-LYT JC965_03715 PF00990 Diguanylate cyclase, GGDEF domain JC965_03720 PF01590 GAF domain JC965_03720 PF00158 Sigma-54 interaction domain JC965_03720 PF02954 Bacterial regulatory protein, Fis family JC965_03725 PF00171 Aldehyde dehydrogenase family JC965_03735 PF00892 EamA-like transporter family JC965_03745 PF00248 Aldo/keto reductase family JC965_03755 PF12431 Transcriptional regulator JC965_03755 PF00072 Response regulator receiver domain JC965_03760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_03760 PF17203 Single cache domain 3 JC965_03760 PF00989 PAS fold JC965_03760 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JC965_03765 PF01047 MarR family JC965_03770 PF00529 HlyD membrane-fusion protein of T1SS JC965_03770 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JC965_03790 PF01679 Proteolipid membrane potential modulator JC965_03800 PF13597 Anaerobic ribonucleoside-triphosphate reductase JC965_03800 PF03477 ATP cone domain JC965_03810 PF00533 BRCA1 C Terminus (BRCT) domain JC965_03810 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JC965_03810 PF03120 NAD-dependent DNA ligase OB-fold domain JC965_03810 PF12826 Helix-hairpin-helix motif JC965_03810 PF01653 NAD-dependent DNA ligase adenylation domain JC965_03815 PF04354 ZipA, C-terminal FtsZ-binding domain JC965_03820 PF02463 RecF/RecN/SMC N terminal domain JC965_03820 PF06470 SMC proteins Flexible Hinge Domain JC965_03830 PF03458 UPF0126 domain JC965_03840 PF05951 Bacterial protein of unknown function (DUF882) JC965_03845 PF01471 Putative peptidoglycan binding domain JC965_03845 PF03734 L,D-transpeptidase catalytic domain JC965_03860 PF00535 Glycosyl transferase family 2 JC965_03875 PF00128 Alpha amylase, catalytic domain JC965_03885 PF00072 Response regulator receiver domain JC965_03885 PF00196 Bacterial regulatory proteins, luxR family JC965_03905 PF00999 Sodium/hydrogen exchanger family JC965_03905 PF02080 TrkA-C domain JC965_03905 PF02254 TrkA-N domain JC965_03910 PF00990 Diguanylate cyclase, GGDEF domain JC965_03915 PF09179 TilS substrate binding domain JC965_03915 PF11734 TilS substrate C-terminal domain JC965_03915 PF01171 PP-loop family JC965_03920 PF01431 Peptidase family M13 JC965_03920 PF05649 Peptidase family M13 JC965_03930 PF12848 ABC transporter JC965_03930 PF16326 ABC transporter C-terminal domain JC965_03930 PF00005 ABC transporter JC965_03945 PF07071 KDGP aldolase JC965_03950 PF03841 L-seryl-tRNA selenium transferase JC965_03955 PF01979 Amidohydrolase family JC965_03985 PF13180 PDZ domain JC965_03990 PF00595 PDZ domain JC965_03990 PF13180 PDZ domain JC965_04000 PF03969 AFG1-like ATPase JC965_04005 PF00572 Ribosomal protein L13 JC965_04010 PF00380 Ribosomal protein S9/S16 JC965_04015 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal JC965_04015 PF00355 Rieske [2Fe-2S] domain JC965_04020 PF00033 Cytochrome b/b6/petB JC965_04020 PF00032 Cytochrome b(C-terminal)/b6/petD JC965_04025 PF02167 Cytochrome C1 family JC965_04030 PF00043 Glutathione S-transferase, C-terminal domain JC965_04030 PF02798 Glutathione S-transferase, N-terminal domain JC965_04035 PF04386 Stringent starvation protein B JC965_04040 PF04972 BON domain JC965_04045 PF13580 SIS domain JC965_04050 PF02021 Uncharacterised protein family UPF0102 JC965_04055 PF04348 LppC putative lipoprotein JC965_04060 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JC965_04070 PF02381 MraZ protein, putative antitoxin-like JC965_04075 PF01795 MraW methylase family JC965_04080 PF04999 Cell division protein FtsL JC965_04085 PF00905 Penicillin binding protein transpeptidase domain JC965_04085 PF03717 Penicillin-binding Protein dimerisation domain JC965_04090 PF02875 Mur ligase family, glutamate ligase domain JC965_04090 PF01225 Mur ligase family, catalytic domain JC965_04090 PF08245 Mur ligase middle domain JC965_04095 PF01225 Mur ligase family, catalytic domain JC965_04095 PF02875 Mur ligase family, glutamate ligase domain JC965_04095 PF08245 Mur ligase middle domain JC965_04100 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 JC965_04100 PF00953 Glycosyl transferase family 4 JC965_04105 PF08245 Mur ligase middle domain JC965_04105 PF02875 Mur ligase family, glutamate ligase domain JC965_04110 PF01098 Cell cycle protein JC965_04115 PF04101 Glycosyltransferase family 28 C-terminal domain JC965_04115 PF03033 Glycosyltransferase family 28 N-terminal domain JC965_04120 PF02875 Mur ligase family, glutamate ligase domain JC965_04120 PF01225 Mur ligase family, catalytic domain JC965_04120 PF08245 Mur ligase middle domain JC965_04125 PF03799 Cell division protein FtsQ JC965_04125 PF08478 POTRA domain, FtsQ-type JC965_04130 PF02491 SHS2 domain inserted in FTSA JC965_04135 PF00091 Tubulin/FtsZ family, GTPase domain JC965_04135 PF12327 FtsZ family, C-terminal domain JC965_04140 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase JC965_04150 PF07517 SecA DEAD-like domain JC965_04150 PF01043 SecA preprotein cross-linking domain JC965_04150 PF07516 SecA Wing and Scaffold domain JC965_04150 PF02810 SEC-C motif JC965_04160 PF00293 NUDIX domain JC965_04165 PF03884 DNA gyrase inhibitor YacG JC965_04170 PF07072 Cell division protein JC965_04175 PF01121 Dephospho-CoA kinase JC965_04180 PF01478 Type IV leader peptidase family JC965_04180 PF06750 Bacterial Peptidase A24 N-terminal domain JC965_04185 PF00482 Type II secretion system (T2SS), protein F JC965_04190 PF00437 Type II/IV secretion system protein JC965_04190 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JC965_04195 PF07963 Prokaryotic N-terminal methylation motif JC965_04200 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain JC965_04200 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain JC965_04210 PF01510 N-acetylmuramoyl-L-alanine amidase JC965_04215 PF07729 FCD domain JC965_04215 PF00392 Bacterial regulatory proteins, gntR family JC965_04220 PF17831 Pyruvate dehydrogenase E1 component middle domain JC965_04220 PF00456 Transketolase, thiamine diphosphate binding domain JC965_04225 PF00364 Biotin-requiring enzyme JC965_04225 PF02817 e3 binding domain JC965_04225 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JC965_04230 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JC965_04230 PF07992 Pyridine nucleotide-disulphide oxidoreductase JC965_04240 PF12729 Four helix bundle sensory module for signal transduction JC965_04240 PF00672 HAMP domain JC965_04240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JC965_04245 PF00672 HAMP domain JC965_04245 PF12729 Four helix bundle sensory module for signal transduction JC965_04245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JC965_04250 PF01734 Patatin-like phospholipase JC965_04255 PF06434 Aconitate hydratase 2 N-terminus JC965_04255 PF11791 Aconitate B N-terminal domain JC965_04255 PF00330 Aconitase family (aconitate hydratase) JC965_04260 PF12792 CSS motif domain associated with EAL JC965_04260 PF00563 EAL domain JC965_04265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_04265 PF03466 LysR substrate binding domain JC965_04270 PF01810 LysE type translocator JC965_04275 PF04030 D-arabinono-1,4-lactone oxidase JC965_04275 PF01565 FAD binding domain JC965_04280 PF07683 Cobalamin synthesis protein cobW C-terminal domain JC965_04280 PF02492 CobW/HypB/UreG, nucleotide-binding domain JC965_04285 PF07690 Major Facilitator Superfamily JC965_04295 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JC965_04300 PF02152 Dihydroneopterin aldolase JC965_04305 PF02660 Glycerol-3-phosphate acyltransferase JC965_04345 PF02028 BCCT, betaine/carnitine/choline family transporter JC965_04350 PF01624 MutS domain I JC965_04350 PF05192 MutS domain III JC965_04350 PF00488 MutS domain V JC965_04350 PF05190 MutS family domain IV JC965_04350 PF05188 MutS domain II JC965_04360 PF02464 Competence-damaged protein JC965_04365 PF00154 recA bacterial DNA recombination protein JC965_04375 PF13358 DDE superfamily endonuclease JC965_04385 PF04002 RadC-like JAB domain JC965_04395 PF06067 Domain of unknown function (DUF932) JC965_04400 PF02195 ParB-like nuclease domain JC965_04405 PF05284 Protein of unknown function (DUF736) JC965_04445 PF13614 AAA domain JC965_04460 PF10502 Signal peptidase, peptidase S26 JC965_04475 PF00462 Glutaredoxin JC965_04485 PF07690 Major Facilitator Superfamily JC965_04490 PF13411 MerR HTH family regulatory protein JC965_04495 PF02321 Outer membrane efflux protein JC965_04500 PF00873 AcrB/AcrD/AcrF family JC965_04510 PF01022 Bacterial regulatory protein, arsR family JC965_04515 PF01545 Cation efflux family JC965_04520 PF02583 Metal-sensitive transcriptional repressor JC965_04525 PF07690 Major Facilitator Superfamily JC965_04530 PF01022 Bacterial regulatory protein, arsR family JC965_04535 PF00403 Heavy-metal-associated domain JC965_04540 PF00376 MerR family regulatory protein JC965_04540 PF09278 MerR, DNA binding JC965_04545 PF00111 2Fe-2S iron-sulfur cluster binding domain JC965_04570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_04570 PF03466 LysR substrate binding domain JC965_04585 PF02534 Type IV secretory system Conjugative DNA transfer JC965_04595 PF00437 Type II/IV secretion system protein JC965_04600 PF04956 TrbC/VIRB2 family JC965_04610 PF03135 CagE, TrbE, VirB family, component of type IV transporter system JC965_04625 PF04610 TrbL/VirB6 plasmid conjugal transfer protein JC965_04640 PF03743 Bacterial conjugation TrbI-like protein JC965_04650 PF00884 Sulfatase JC965_04660 PF00128 Alpha amylase, catalytic domain JC965_04660 PF02903 Alpha amylase, N-terminal ig-like domain JC965_04660 PF16657 Maltogenic Amylase, C-terminal domain JC965_04665 PF02308 MgtC family JC965_04685 PF00106 short chain dehydrogenase JC965_04700 PF00465 Iron-containing alcohol dehydrogenase JC965_04710 PF01053 Cys/Met metabolism PLP-dependent enzyme JC965_04720 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JC965_04720 PF12793 Sugar transport-related sRNA regulator N-term JC965_04740 PF00561 alpha/beta hydrolase fold JC965_04750 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JC965_04750 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JC965_04755 PF02698 DUF218 domain JC965_04760 PF01752 Collagenase JC965_04760 PF08453 Peptidase family M9 N-terminal JC965_04765 PF00501 AMP-binding enzyme JC965_04765 PF13193 AMP-binding enzyme C-terminal domain JC965_04770 PF13378 Enolase C-terminal domain-like JC965_04775 PF00378 Enoyl-CoA hydratase/isomerase JC965_04780 PF12697 Alpha/beta hydrolase family JC965_04785 PF16582 Middle domain of thiamine pyrophosphate JC965_04785 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JC965_04785 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JC965_04790 PF00425 chorismate binding enzyme JC965_04795 PF01040 UbiA prenyltransferase family JC965_04815 PF03880 DbpA RNA binding domain JC965_04815 PF00270 DEAD/DEAH box helicase JC965_04815 PF00271 Helicase conserved C-terminal domain JC965_04820 PF07670 Nucleoside recognition JC965_04820 PF01773 Na+ dependent nucleoside transporter N-terminus JC965_04820 PF07662 Na+ dependent nucleoside transporter C-terminus JC965_04825 PF12323 Helix-turn-helix domain JC965_04825 PF01385 Probable transposase JC965_04825 PF07282 Putative transposase DNA-binding domain JC965_04840 PF01171 PP-loop family JC965_04845 PF00582 Universal stress protein family JC965_04850 PF00027 Cyclic nucleotide-binding domain JC965_04850 PF13545 Crp-like helix-turn-helix domain JC965_04865 PF00403 Heavy-metal-associated domain JC965_04875 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JC965_04875 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP JC965_04890 PF00115 Cytochrome C and Quinol oxidase polypeptide I JC965_04905 PF13185 GAF domain JC965_04910 PF04352 ProQ/FINO family JC965_04910 PF17516 ProQ C-terminal domain JC965_04915 PF17804 Tail specific protease N-terminal domain JC965_04915 PF03572 Peptidase family S41 JC965_04915 PF00595 PDZ domain JC965_04915 PF11818 C-terminal domain of tail specific protease (DUF3340) JC965_04920 PF01433 Peptidase family M1 domain JC965_04920 PF17432 Domain of unknown function (DUF3458_C) ARM repeats JC965_04920 PF11940 Domain of unknown function (DUF3458) Ig-like fold JC965_04930 PF05088 Bacterial NAD-glutamate dehydrogenase JC965_04935 PF01180 Dihydroorotate dehydrogenase JC965_04940 PF07126 Cell-division protein ZapC JC965_04945 PF01170 Putative RNA methylase family UPF0020 JC965_04945 PF02926 THUMP domain JC965_04945 PF10672 S-adenosylmethionine-dependent methyltransferase JC965_04955 PF16326 ABC transporter C-terminal domain JC965_04955 PF00005 ABC transporter JC965_04955 PF12848 ABC transporter JC965_04965 PF04957 Ribosome modulation factor JC965_04970 PF07977 FabA-like domain JC965_04975 PF05362 Lon protease (S16) C-terminal proteolytic domain JC965_04975 PF13654 AAA domain JC965_04985 PF07130 YebG protein JC965_05005 PF02347 Glycine cleavage system P-protein JC965_05010 PF01597 Glycine cleavage H-protein JC965_05015 PF01571 Aminomethyltransferase folate-binding domain JC965_05015 PF08669 Glycine cleavage T-protein C-terminal barrel domain JC965_05020 PF01494 FAD binding domain JC965_05025 PF01494 FAD binding domain JC965_05030 PF03695 Uncharacterised protein family (UPF0149) JC965_05035 PF05164 Cell division protein ZapA JC965_05045 PF07690 Major Facilitator Superfamily JC965_05050 PF00005 ABC transporter JC965_05055 PF12911 N-terminal TM domain of oligopeptide transport permease C JC965_05055 PF00528 Binding-protein-dependent transport system inner membrane component JC965_05060 PF00528 Binding-protein-dependent transport system inner membrane component JC965_05070 PF00043 Glutathione S-transferase, C-terminal domain JC965_05070 PF02798 Glutathione S-transferase, N-terminal domain JC965_05085 PF00459 Inositol monophosphatase family JC965_05090 PF00691 OmpA family JC965_05090 PF18393 MotY N-terminal domain JC965_05095 PF00672 HAMP domain JC965_05095 PF12729 Four helix bundle sensory module for signal transduction JC965_05095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JC965_05100 PF00929 Exonuclease JC965_05105 PF13726 Na+-H+ antiporter family JC965_05105 PF03553 Na+/H+ antiporter family JC965_05110 PF07690 Major Facilitator Superfamily JC965_05115 PF03466 LysR substrate binding domain JC965_05115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_05120 PF08448 PAS fold JC965_05120 PF08447 PAS fold JC965_05120 PF00990 Diguanylate cyclase, GGDEF domain JC965_05120 PF00563 EAL domain JC965_05130 PF00270 DEAD/DEAH box helicase JC965_05130 PF03880 DbpA RNA binding domain JC965_05130 PF00271 Helicase conserved C-terminal domain JC965_05135 PF03061 Thioesterase superfamily JC965_05145 PF02913 FAD linked oxidases, C-terminal domain JC965_05145 PF01565 FAD binding domain JC965_05145 PF13183 4Fe-4S dicluster domain JC965_05170 PF02146 Sir2 family JC965_05185 PF00072 Response regulator receiver domain JC965_05185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_05185 PF00512 His Kinase A (phospho-acceptor) domain JC965_05185 PF09456 RcsC Alpha-Beta-Loop (ABL) JC965_05190 PF00216 Bacterial DNA-binding protein JC965_05195 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JC965_05195 PF01588 Putative tRNA binding domain JC965_05195 PF03147 Ferredoxin-fold anticodon binding domain JC965_05195 PF03484 tRNA synthetase B5 domain JC965_05195 PF03483 B3/4 domain JC965_05200 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JC965_05200 PF01409 tRNA synthetases class II core domain (F) JC965_05205 PF00453 Ribosomal protein L20 JC965_05210 PF01632 Ribosomal protein L35 JC965_05215 PF05198 Translation initiation factor IF-3, N-terminal domain JC965_05215 PF00707 Translation initiation factor IF-3, C-terminal domain JC965_05220 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JC965_05220 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JC965_05220 PF03129 Anticodon binding domain JC965_05220 PF02824 TGS domain JC965_05235 PF04055 Radical SAM superfamily JC965_05245 PF00521 DNA gyrase/topoisomerase IV, subunit A JC965_05245 PF03989 DNA gyrase C-terminal domain, beta-propeller JC965_05255 PF13419 Haloacid dehalogenase-like hydrolase JC965_05260 PF02867 Ribonucleotide reductase, barrel domain JC965_05260 PF03477 ATP cone domain JC965_05260 PF00317 Ribonucleotide reductase, all-alpha domain JC965_05265 PF00268 Ribonucleotide reductase, small chain JC965_05270 PF00111 2Fe-2S iron-sulfur cluster binding domain JC965_05275 PF03562 MltA specific insert domain JC965_05275 PF06725 3D domain JC965_05280 PF06945 Protein of unknown function (DUF1289) JC965_05285 PF02378 Phosphotransferase system, EIIC JC965_05285 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JC965_05290 PF00294 pfkB family carbohydrate kinase JC965_05295 PF00381 PTS HPr component phosphorylation site JC965_05295 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JC965_05300 PF00356 Bacterial regulatory proteins, lacI family JC965_05300 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JC965_05305 PF03222 Tryptophan/tyrosine permease family JC965_05320 PF00270 DEAD/DEAH box helicase JC965_05320 PF00271 Helicase conserved C-terminal domain JC965_05335 PF01264 Chorismate synthase JC965_05340 PF05175 Methyltransferase small domain JC965_05345 PF01713 Smr domain JC965_05380 PF03831 PhnA domain JC965_05380 PF08274 PhnA Zinc-Ribbon JC965_05400 PF00300 Histidine phosphatase superfamily (branch 1) JC965_05420 PF03330 Lytic transglycolase JC965_05420 PF05036 Sporulation related domain JC965_05425 PF16330 MukB hinge domain JC965_05425 PF04310 MukB N-terminal JC965_05430 PF04288 MukE-like family JC965_05435 PF03882 MukF winged-helix domain JC965_05435 PF17193 MukF C-terminal domain JC965_05435 PF17192 MukF middle domain JC965_05440 PF13847 Methyltransferase domain JC965_05445 PF02698 DUF218 domain JC965_05450 PF00121 Triosephosphate isomerase JC965_05455 PF00365 Phosphofructokinase JC965_05460 PF07687 Peptidase dimerisation domain JC965_05460 PF01546 Peptidase family M20/M25/M40 JC965_05465 PF13419 Haloacid dehalogenase-like hydrolase JC965_05470 PF02789 Cytosol aminopeptidase family, N-terminal domain JC965_05470 PF00883 Cytosol aminopeptidase family, catalytic domain JC965_05495 PF11398 Protein of unknown function (DUF2813) JC965_05510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_05510 PF03466 LysR substrate binding domain JC965_05525 PF00672 HAMP domain JC965_05525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JC965_05530 PF07499 RuvA, C-terminal domain JC965_05530 PF01330 RuvA N terminal domain JC965_05535 PF05496 Holliday junction DNA helicase RuvB P-loop domain JC965_05535 PF17864 RuvB AAA lid domain JC965_05535 PF05491 RuvB C-terminal winged helix domain JC965_05540 PF01654 Cytochrome bd terminal oxidase subunit I JC965_05545 PF02322 Cytochrome bd terminal oxidase subunit II JC965_05550 PF08173 Membrane bound YbgT-like protein JC965_05555 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) JC965_05560 PF03061 Thioesterase superfamily JC965_05565 PF01618 MotA/TolQ/ExbB proton channel family JC965_05570 PF02472 Biopolymer transport protein ExbD/TolR JC965_05580 PF07676 WD40-like Beta Propeller Repeat JC965_05580 PF04052 TolB amino-terminal domain JC965_05585 PF00691 OmpA family JC965_05590 PF16331 TolA binding protein trimerisation JC965_05590 PF13174 Tetratricopeptide repeat JC965_05675 PF02445 Quinolinate synthetase A protein JC965_05680 PF01263 Aldose 1-epimerase JC965_05685 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JC965_05685 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JC965_05690 PF02446 4-alpha-glucanotransferase JC965_05695 PF00128 Alpha amylase, catalytic domain JC965_05695 PF02806 Alpha amylase, C-terminal all-beta domain JC965_05695 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JC965_05700 PF00128 Alpha amylase, catalytic domain JC965_05700 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JC965_05705 PF01641 SelR domain JC965_05720 PF00293 NUDIX domain JC965_05725 PF16884 N-terminal domain of oxidoreductase JC965_05725 PF00107 Zinc-binding dehydrogenase JC965_05730 PF01047 MarR family JC965_05745 PF01037 Lrp/AsnC ligand binding domain JC965_05755 PF07690 Major Facilitator Superfamily JC965_05775 PF00209 Sodium:neurotransmitter symporter family JC965_05780 PF00209 Sodium:neurotransmitter symporter family JC965_05795 PF00392 Bacterial regulatory proteins, gntR family JC965_05795 PF00155 Aminotransferase class I and II JC965_05810 PF01177 Asp/Glu/Hydantoin racemase JC965_05820 PF00501 AMP-binding enzyme JC965_05830 PF00583 Acetyltransferase (GNAT) family JC965_05840 PF12592 Protein of unknown function (DUF3763) JC965_05840 PF07728 AAA domain (dynein-related subfamily) JC965_05840 PF17868 AAA lid domain JC965_05845 PF05762 VWA domain containing CoxE-like protein JC965_05850 PF00563 EAL domain JC965_05850 PF00990 Diguanylate cyclase, GGDEF domain JC965_05850 PF08448 PAS fold JC965_05855 PF00072 Response regulator receiver domain JC965_05855 PF00990 Diguanylate cyclase, GGDEF domain JC965_05860 PF03144 Elongation factor Tu domain 2 JC965_05860 PF00009 Elongation factor Tu GTP binding domain JC965_05860 PF16658 Class II release factor RF3, C-terminal domain JC965_05870 PF00583 Acetyltransferase (GNAT) family JC965_05875 PF12804 MobA-like NTP transferase domain JC965_05875 PF00132 Bacterial transferase hexapeptide (six repeats) JC965_05880 PF00583 Acetyltransferase (GNAT) family JC965_05885 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JC965_05895 PF04480 Protein of unknown function (DUF559) JC965_05900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_05900 PF03466 LysR substrate binding domain JC965_05905 PF04371 Porphyromonas-type peptidyl-arginine deiminase JC965_05910 PF01425 Amidase JC965_05965 PF00128 Alpha amylase, catalytic domain JC965_05980 PF02843 Phosphoribosylglycinamide synthetase, C domain JC965_05980 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JC965_05980 PF02844 Phosphoribosylglycinamide synthetase, N domain JC965_05985 PF01808 AICARFT/IMPCHase bienzyme JC965_05985 PF02142 MGS-like domain JC965_05990 PF13411 MerR HTH family regulatory protein JC965_06005 PF06969 HemN C-terminal domain JC965_06005 PF04055 Radical SAM superfamily JC965_06010 PF01725 Ham1 family JC965_06015 PF07690 Major Facilitator Superfamily JC965_06020 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JC965_06020 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JC965_06030 PF01957 NfeD-like C-terminal, partner-binding JC965_06035 PF16200 C-terminal region of band_7 JC965_06035 PF01145 SPFH domain / Band 7 family JC965_06040 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JC965_06040 PF14824 Sirohaem biosynthesis protein central JC965_06040 PF10414 Sirohaem synthase dimerisation region JC965_06045 PF01507 Phosphoadenosine phosphosulfate reductase family JC965_06050 PF00009 Elongation factor Tu GTP binding domain JC965_06055 PF03600 Citrate transporter JC965_06055 PF02080 TrkA-C domain JC965_06085 PF12729 Four helix bundle sensory module for signal transduction JC965_06085 PF00672 HAMP domain JC965_06085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JC965_06105 PF00005 ABC transporter JC965_06120 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) JC965_06135 PF00719 Inorganic pyrophosphatase JC965_06140 PF08245 Mur ligase middle domain JC965_06140 PF02875 Mur ligase family, glutamate ligase domain JC965_06140 PF01225 Mur ligase family, catalytic domain JC965_06145 PF02441 Flavoprotein JC965_06150 PF00440 Bacterial regulatory proteins, tetR family JC965_06155 PF00156 Phosphoribosyl transferase domain JC965_06160 PF00005 ABC transporter JC965_06165 PF01061 ABC-2 type transporter JC965_06175 PF02569 Pantoate-beta-alanine ligase JC965_06180 PF02548 Ketopantoate hydroxymethyltransferase JC965_06185 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JC965_06190 PF01743 Poly A polymerase head domain JC965_06190 PF12626 Polymerase A arginine-rich C-terminus JC965_06190 PF12627 Probable RNA and SrmB- binding site of polymerase A JC965_06195 PF00749 tRNA synthetases class I (E and Q), catalytic domain JC965_06200 PF01258 Prokaryotic dksA/traR C4-type zinc finger JC965_06205 PF17746 SfsA N-terminal OB domain JC965_06205 PF03749 Sugar fermentation stimulation protein RE domain JC965_06215 PF00270 DEAD/DEAH box helicase JC965_06215 PF04408 Helicase associated domain (HA2) JC965_06215 PF00271 Helicase conserved C-terminal domain JC965_06215 PF08482 ATP-dependent helicase C-terminal JC965_06220 PF14814 Bifunctional transglycosylase second domain JC965_06220 PF00912 Transglycosylase JC965_06220 PF00905 Penicillin binding protein transpeptidase domain JC965_06225 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JC965_06230 PF00893 Small Multidrug Resistance protein JC965_06235 PF00893 Small Multidrug Resistance protein JC965_06240 PF03466 LysR substrate binding domain JC965_06240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_06250 PF01569 PAP2 superfamily JC965_06265 PF00202 Aminotransferase class-III JC965_06270 PF00654 Voltage gated chloride channel JC965_06280 PF01521 Iron-sulphur cluster biosynthesis JC965_06285 PF10502 Signal peptidase, peptidase S26 JC965_06300 PF13614 AAA domain JC965_06340 PF00665 Integrase core domain JC965_06340 PF13936 Helix-turn-helix domain JC965_06345 PF10137 Predicted nucleotide-binding protein containing TIR-like domain JC965_06350 PF05284 Protein of unknown function (DUF736) JC965_06360 PF02195 ParB-like nuclease domain JC965_06365 PF06067 Domain of unknown function (DUF932) JC965_06375 PF04002 RadC-like JAB domain JC965_06380 PF00005 ABC transporter JC965_06380 PF03459 TOBE domain JC965_06395 PF00145 C-5 cytosine-specific DNA methylase JC965_06395 PF01381 Helix-turn-helix JC965_06410 PF04002 RadC-like JAB domain JC965_06595 PF00145 C-5 cytosine-specific DNA methylase JC965_06600 PF01751 Toprim domain JC965_06600 PF01131 DNA topoisomerase JC965_06605 PF00436 Single-strand binding protein family JC965_06640 PF13614 AAA domain JC965_06670 PF07690 Major Facilitator Superfamily JC965_06675 PF13192 Thioredoxin domain JC965_06675 PF07992 Pyridine nucleotide-disulphide oxidoreductase JC965_06680 PF10417 C-terminal domain of 1-Cys peroxiredoxin JC965_06680 PF00578 AhpC/TSA family JC965_06685 PF00571 CBS domain JC965_06690 PF02547 Queuosine biosynthesis protein JC965_06695 PF01702 Queuine tRNA-ribosyltransferase JC965_06700 PF02699 Preprotein translocase subunit JC965_06705 PF07549 SecD/SecF GG Motif JC965_06705 PF13721 SecD export protein N-terminal TM region JC965_06705 PF02355 Protein export membrane protein JC965_06710 PF07549 SecD/SecF GG Motif JC965_06710 PF02355 Protein export membrane protein JC965_06715 PF00581 Rhodanese-like domain JC965_06720 PF07719 Tetratricopeptide repeat JC965_06720 PF13181 Tetratricopeptide repeat JC965_06725 PF01136 Peptidase family U32 JC965_06730 PF01136 Peptidase family U32 JC965_06735 PF02036 SCP-2 sterol transfer family JC965_06740 PF00588 SpoU rRNA Methylase family JC965_06745 PF02082 Transcriptional regulator JC965_06750 PF00266 Aminotransferase class-V JC965_06755 PF01592 NifU-like N terminal domain JC965_06760 PF01521 Iron-sulphur cluster biosynthesis JC965_06765 PF07743 HSCB C-terminal oligomerisation domain JC965_06765 PF00226 DnaJ domain JC965_06770 PF00012 Hsp70 protein JC965_06775 PF00111 2Fe-2S iron-sulfur cluster binding domain JC965_06780 PF12404 Peptidase JC965_06780 PF00883 Cytosol aminopeptidase family, catalytic domain JC965_06785 PF00883 Cytosol aminopeptidase family, catalytic domain JC965_06785 PF12404 Peptidase JC965_06790 PF00334 Nucleoside diphosphate kinase JC965_06795 PF04055 Radical SAM superfamily JC965_06805 PF13464 Domain of unknown function (DUF4115) JC965_06810 PF04551 GcpE protein JC965_06815 PF03129 Anticodon binding domain JC965_06815 PF13393 Histidyl-tRNA synthetase JC965_06820 PF09976 Tetratricopeptide repeat-like domain JC965_06825 PF13360 PQQ-like domain JC965_06830 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JC965_06830 PF01926 50S ribosome-binding GTPase JC965_06835 PF07191 zinc-ribbons JC965_06840 PF01464 Transglycosylase SLT domain JC965_06840 PF00497 Bacterial extracellular solute-binding proteins, family 3 JC965_06845 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal JC965_06845 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JC965_06845 PF02769 AIR synthase related protein, C-terminal domain JC965_06850 PF00361 Proton-conducting membrane transporter JC965_06855 PF00361 Proton-conducting membrane transporter JC965_06860 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JC965_06860 PF00361 Proton-conducting membrane transporter JC965_06865 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JC965_06870 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 JC965_06875 PF12838 4Fe-4S dicluster domain JC965_06880 PF00146 NADH dehydrogenase JC965_06885 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JC965_06885 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JC965_06885 PF00384 Molybdopterin oxidoreductase JC965_06890 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JC965_06890 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JC965_06900 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit JC965_06900 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit JC965_06905 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit JC965_06910 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 JC965_06915 PF13677 Membrane MotB of proton-channel complex MotA/MotB JC965_06915 PF00691 OmpA family JC965_06920 PF01618 MotA/TolQ/ExbB proton channel family JC965_06940 PF04536 TPM domain JC965_06950 PF03411 Penicillin-insensitive murein endopeptidase JC965_06960 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JC965_06965 PF00248 Aldo/keto reductase family JC965_06980 PF01212 Beta-eliminating lyase JC965_06990 PF00486 Transcriptional regulatory protein, C terminal JC965_06990 PF00072 Response regulator receiver domain JC965_07005 PF03544 Gram-negative bacterial TonB protein C-terminal JC965_07010 PF02472 Biopolymer transport protein ExbD/TolR JC965_07015 PF01618 MotA/TolQ/ExbB proton channel family JC965_07020 PF01618 MotA/TolQ/ExbB proton channel family JC965_07030 PF00196 Bacterial regulatory proteins, luxR family JC965_07030 PF03472 Autoinducer binding domain JC965_07035 PF01380 SIS domain JC965_07040 PF00455 DeoR C terminal sensor domain JC965_07040 PF08220 DeoR-like helix-turn-helix domain JC965_07045 PF00072 Response regulator receiver domain JC965_07045 PF00486 Transcriptional regulatory protein, C terminal JC965_07050 PF00512 His Kinase A (phospho-acceptor) domain JC965_07050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_07050 PF00672 HAMP domain JC965_07055 PF00905 Penicillin binding protein transpeptidase domain JC965_07060 PF06123 Inner membrane protein CreD JC965_07065 PF14602 Hexapeptide repeat of succinyl-transferase JC965_07065 PF12804 MobA-like NTP transferase domain JC965_07065 PF00132 Bacterial transferase hexapeptide (six repeats) JC965_07070 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain JC965_07070 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JC965_07075 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JC965_07075 PF02874 ATP synthase alpha/beta family, beta-barrel domain JC965_07080 PF00231 ATP synthase JC965_07085 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JC965_07085 PF00306 ATP synthase alpha/beta chain, C terminal domain JC965_07085 PF02874 ATP synthase alpha/beta family, beta-barrel domain JC965_07090 PF00213 ATP synthase delta (OSCP) subunit JC965_07095 PF00430 ATP synthase B/B' CF(0) JC965_07100 PF00137 ATP synthase subunit C JC965_07105 PF00119 ATP synthase A chain JC965_07115 PF17762 HTH domain found in ParB protein JC965_07115 PF02195 ParB-like nuclease domain JC965_07120 PF13614 AAA domain JC965_07125 PF02527 rRNA small subunit methyltransferase G JC965_07130 PF01134 Glucose inhibited division protein A JC965_07130 PF13932 GidA associated domain JC965_07135 PF00258 Flavodoxin JC965_07140 PF07715 TonB-dependent Receptor Plug Domain JC965_07140 PF00593 TonB dependent receptor JC965_07145 PF00005 ABC transporter JC965_07150 PF00005 ABC transporter JC965_07155 PF01497 Periplasmic binding protein JC965_07160 PF01032 FecCD transport family JC965_07165 PF01926 50S ribosome-binding GTPase JC965_07165 PF10396 GTP-binding protein TrmE N-terminus JC965_07165 PF12631 MnmE helical domain JC965_07170 PF02096 60Kd inner membrane protein JC965_07170 PF14849 YidC periplasmic domain JC965_07175 PF01809 Putative membrane protein insertion efficiency factor JC965_07180 PF00825 Ribonuclease P JC965_07185 PF00468 Ribosomal protein L34 JC965_07190 PF00005 ABC transporter JC965_07195 PF00528 Binding-protein-dependent transport system inner membrane component JC965_07200 PF00497 Bacterial extracellular solute-binding proteins, family 3 JC965_07205 PF11638 DnaA N-terminal domain JC965_07205 PF08299 Bacterial dnaA protein helix-turn-helix JC965_07205 PF00308 Bacterial dnaA protein JC965_07210 PF00712 DNA polymerase III beta subunit, N-terminal domain JC965_07210 PF02768 DNA polymerase III beta subunit, C-terminal domain JC965_07210 PF02767 DNA polymerase III beta subunit, central domain JC965_07215 PF02463 RecF/RecN/SMC N terminal domain JC965_07220 PF18053 DNA gyrase B subunit insert domain JC965_07220 PF01751 Toprim domain JC965_07220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_07220 PF00986 DNA gyrase B subunit, carboxyl terminus JC965_07220 PF00204 DNA gyrase B JC965_07230 PF12706 Beta-lactamase superfamily domain JC965_07235 PF00011 Hsp20/alpha crystallin family JC965_07240 PF00011 Hsp20/alpha crystallin family JC965_07245 PF00155 Aminotransferase class I and II JC965_07260 PF07690 Major Facilitator Superfamily JC965_07265 PF00486 Transcriptional regulatory protein, C terminal JC965_07265 PF00072 Response regulator receiver domain JC965_07270 PF13493 Domain of unknown function (DUF4118) JC965_07270 PF13492 GAF domain JC965_07270 PF00512 His Kinase A (phospho-acceptor) domain JC965_07270 PF02702 Osmosensitive K+ channel His kinase sensor domain JC965_07270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_07275 PF02669 K+-transporting ATPase, c chain JC965_07285 PF03814 Potassium-transporting ATPase A subunit JC965_07295 PF03641 Possible lysine decarboxylase JC965_07295 PF11892 Domain of unknown function (DUF3412) JC965_07295 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases JC965_07300 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JC965_07300 PF01367 5'-3' exonuclease, C-terminal SAM fold JC965_07305 PF18324 Hypothetical protein TT1725 JC965_07305 PF00180 Isocitrate/isopropylmalate dehydrogenase JC965_07315 PF18125 RlmM ferredoxin-like domain JC965_07315 PF01728 FtsJ-like methyltransferase JC965_07330 PF03466 LysR substrate binding domain JC965_07330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_07335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JC965_07335 PF00672 HAMP domain JC965_07340 PF11799 impB/mucB/samB family C-terminal domain JC965_07340 PF11798 IMS family HHH motif JC965_07340 PF00817 impB/mucB/samB family JC965_07355 PF02424 ApbE family JC965_07360 PF00175 Oxidoreductase NAD-binding domain JC965_07360 PF00970 Oxidoreductase FAD-binding domain JC965_07360 PF00111 2Fe-2S iron-sulfur cluster binding domain JC965_07365 PF02508 Rnf-Nqr subunit, membrane protein JC965_07370 PF02508 Rnf-Nqr subunit, membrane protein JC965_07375 PF04205 FMN-binding domain JC965_07380 PF03116 NQR2, RnfD, RnfE family JC965_07385 PF11973 NQRA C-terminal domain JC965_07385 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) JC965_07390 PF01722 BolA-like protein JC965_07395 PF05175 Methyltransferase small domain JC965_07405 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JC965_07415 PF07690 Major Facilitator Superfamily JC965_07420 PF03502 Nucleoside-specific channel-forming protein, Tsx JC965_07425 PF04461 Protein of unknown function (DUF520) JC965_07430 PF08546 Ketopantoate reductase PanE/ApbA C terminal JC965_07430 PF02558 Ketopantoate reductase PanE/ApbA JC965_07435 PF01965 DJ-1/PfpI family JC965_07440 PF00916 Sulfate permease family JC965_07440 PF01740 STAS domain JC965_07450 PF00486 Transcriptional regulatory protein, C terminal JC965_07450 PF00072 Response regulator receiver domain JC965_07455 PF00529 HlyD membrane-fusion protein of T1SS JC965_07455 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JC965_07460 PF00873 AcrB/AcrD/AcrF family JC965_07475 PF16363 GDP-mannose 4,6 dehydratase JC965_07480 PF00970 Oxidoreductase FAD-binding domain JC965_07480 PF00175 Oxidoreductase NAD-binding domain JC965_07480 PF00042 Globin JC965_07485 PF03063 Prismane/CO dehydrogenase family JC965_07490 PF00210 Ferritin-like domain JC965_07530 PF00106 short chain dehydrogenase JC965_07540 PF03441 FAD binding domain of DNA photolyase JC965_07540 PF00875 DNA photolyase JC965_07545 PF13411 MerR HTH family regulatory protein JC965_07550 PF08349 Protein of unknown function (DUF1722) JC965_07575 PF01817 Chorismate mutase type II JC965_07575 PF00800 Prephenate dehydratase JC965_07605 PF05973 Phage derived protein Gp49-like (DUF891) JC965_07610 PF01381 Helix-turn-helix JC965_07615 PF09588 YqaJ-like viral recombinase domain JC965_07635 PF00583 Acetyltransferase (GNAT) family JC965_07670 PF00180 Isocitrate/isopropylmalate dehydrogenase JC965_07680 PF00291 Pyridoxal-phosphate dependent enzyme JC965_07685 PF03466 LysR substrate binding domain JC965_07685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_07690 PF00816 H-NS histone family JC965_07695 PF00793 DAHP synthetase I family JC965_07700 PF04954 Siderophore-interacting protein JC965_07700 PF08021 Siderophore-interacting FAD-binding domain JC965_07705 PF02321 Outer membrane efflux protein JC965_07710 PF12704 MacB-like periplasmic core domain JC965_07710 PF02687 FtsX-like permease family JC965_07710 PF00005 ABC transporter JC965_07715 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JC965_07725 PF02463 RecF/RecN/SMC N terminal domain JC965_07735 PF01513 ATP-NAD kinase JC965_07740 PF01025 GrpE JC965_07745 PF00012 Hsp70 protein JC965_07750 PF01556 DnaJ C terminal domain JC965_07750 PF00226 DnaJ domain JC965_07750 PF00684 DnaJ central domain JC965_07755 PF02264 LamB porin JC965_07755 PF11471 Maltoporin periplasmic N-terminal extension JC965_07760 PF00294 pfkB family carbohydrate kinase JC965_07765 PF02378 Phosphotransferase system, EIIC JC965_07765 PF00367 phosphotransferase system, EIIB JC965_07770 PF00251 Glycosyl hydrolases family 32 N-terminal domain JC965_07770 PF08244 Glycosyl hydrolases family 32 C terminal JC965_07775 PF13407 Periplasmic binding protein domain JC965_07775 PF00356 Bacterial regulatory proteins, lacI family JC965_07780 PF02308 MgtC family JC965_07795 PF04143 Sulphur transport JC965_07810 PF00873 AcrB/AcrD/AcrF family JC965_07815 PF00563 EAL domain JC965_07815 PF03707 Bacterial signalling protein N terminal repeat JC965_07815 PF00990 Diguanylate cyclase, GGDEF domain JC965_07820 PF03099 Biotin/lipoate A/B protein ligase family JC965_07820 PF10437 Bacterial lipoate protein ligase C-terminus JC965_07840 PF00873 AcrB/AcrD/AcrF family JC965_07845 PF00529 HlyD membrane-fusion protein of T1SS JC965_07845 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JC965_07870 PF01411 tRNA synthetases class II (A) JC965_07870 PF02272 DHHA1 domain JC965_07870 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JC965_07875 PF13840 ACT domain JC965_07875 PF00696 Amino acid kinase family JC965_07875 PF01842 ACT domain JC965_07880 PF02599 Global regulator protein family JC965_07915 PF00768 D-alanyl-D-alanine carboxypeptidase JC965_07920 PF09335 SNARE associated Golgi protein JC965_07925 PF00571 CBS domain JC965_07925 PF03471 Transporter associated domain JC965_07925 PF01595 Cyclin M transmembrane N-terminal domain JC965_07930 PF10458 Valyl tRNA synthetase tRNA binding arm JC965_07930 PF00133 tRNA synthetases class I (I, L, M and V) JC965_07930 PF08264 Anticodon-binding domain of tRNA JC965_07935 PF04364 DNA polymerase III chi subunit, HolC JC965_07940 PF00883 Cytosol aminopeptidase family, catalytic domain JC965_07940 PF02789 Cytosol aminopeptidase family, N-terminal domain JC965_07945 PF03739 Lipopolysaccharide export system permease LptF/LptG JC965_07950 PF03739 Lipopolysaccharide export system permease LptF/LptG JC965_08205 PF00717 Peptidase S24-like JC965_08205 PF01381 Helix-turn-helix JC965_08210 PF00533 BRCA1 C Terminus (BRCT) domain JC965_08210 PF01653 NAD-dependent DNA ligase adenylation domain JC965_08210 PF03120 NAD-dependent DNA ligase OB-fold domain JC965_08210 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JC965_08210 PF12826 Helix-hairpin-helix motif JC965_08225 PF00589 Phage integrase family JC965_08225 PF02899 Phage integrase, N-terminal SAM-like domain JC965_08230 PF02899 Phage integrase, N-terminal SAM-like domain JC965_08230 PF00589 Phage integrase family JC965_08255 PF02664 S-Ribosylhomocysteinase (LuxS) JC965_08265 PF00543 Nitrogen regulatory protein P-II JC965_08270 PF02540 NAD synthase JC965_08270 PF00795 Carbon-nitrogen hydrolase JC965_08290 PF02796 Helix-turn-helix domain of resolvase JC965_08290 PF00665 Integrase core domain JC965_08295 PF01695 IstB-like ATP binding protein JC965_08330 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor JC965_08330 PF07963 Prokaryotic N-terminal methylation motif JC965_08335 PF02401 LytB protein JC965_08340 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JC965_08345 PF01252 Signal peptidase (SPase) II JC965_08350 PF06827 Zinc finger found in FPG and IleRS JC965_08350 PF00133 tRNA synthetases class I (I, L, M and V) JC965_08350 PF08264 Anticodon-binding domain of tRNA JC965_08355 PF01687 Riboflavin kinase JC965_08355 PF06574 FAD synthetase JC965_08360 PF03023 Lipid II flippase MurJ JC965_08365 PF01649 Ribosomal protein S20 JC965_08370 PF01022 Bacterial regulatory protein, arsR family JC965_08375 PF03466 LysR substrate binding domain JC965_08375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_08385 PF06965 Na+/H+ antiporter 1 JC965_08390 PF00303 Thymidylate synthase JC965_08395 PF01790 Prolipoprotein diacylglyceryl transferase JC965_08400 PF02896 PEP-utilising enzyme, TIM barrel domain JC965_08400 PF00391 PEP-utilising enzyme, mobile domain JC965_08400 PF05524 PEP-utilising enzyme, N-terminal JC965_08400 PF01590 GAF domain JC965_08405 PF00293 NUDIX domain JC965_08410 PF02976 DNA mismatch repair enzyme MutH JC965_08420 PF01245 Ribosomal protein L19 JC965_08425 PF01746 tRNA (Guanine-1)-methyltransferase JC965_08430 PF05239 PRC-barrel domain JC965_08430 PF01782 RimM N-terminal domain JC965_08435 PF00886 Ribosomal protein S16 JC965_08440 PF00448 SRP54-type protein, GTPase domain JC965_08440 PF02881 SRP54-type protein, helical bundle domain JC965_08440 PF02978 Signal peptide binding domain JC965_08445 PF01578 Cytochrome C assembly protein JC965_08450 PF03471 Transporter associated domain JC965_08450 PF00571 CBS domain JC965_08450 PF01595 Cyclin M transmembrane N-terminal domain JC965_08455 PF02082 Transcriptional regulator JC965_08460 PF00042 Globin JC965_08460 PF00970 Oxidoreductase FAD-binding domain JC965_08460 PF00175 Oxidoreductase NAD-binding domain JC965_08465 PF08238 Sel1 repeat JC965_08470 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JC965_08470 PF00056 lactate/malate dehydrogenase, NAD binding domain JC965_08475 PF00528 Binding-protein-dependent transport system inner membrane component JC965_08480 PF00528 Binding-protein-dependent transport system inner membrane component JC965_08485 PF00497 Bacterial extracellular solute-binding proteins, family 3 JC965_08490 PF00005 ABC transporter JC965_08495 PF02863 Arginine repressor, C-terminal domain JC965_08495 PF01316 Arginine repressor, DNA binding domain JC965_08500 PF04261 Dyp-type peroxidase family JC965_08505 PF08402 TOBE domain JC965_08505 PF00005 ABC transporter JC965_08520 PF00543 Nitrogen regulatory protein P-II JC965_08525 PF00472 RF-1 domain JC965_08530 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JC965_08530 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JC965_08535 PF07662 Na+ dependent nucleoside transporter C-terminus JC965_08535 PF07670 Nucleoside recognition JC965_08535 PF01773 Na+ dependent nucleoside transporter N-terminus JC965_08540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_08540 PF03466 LysR substrate binding domain JC965_08545 PF00255 Glutathione peroxidase JC965_08580 PF03412 Peptidase C39 family JC965_08580 PF00664 ABC transporter transmembrane region JC965_08580 PF00005 ABC transporter JC965_08585 PF04055 Radical SAM superfamily JC965_08585 PF16199 Radical_SAM C-terminal domain JC965_08590 PF04898 Glutamate synthase central domain JC965_08590 PF01645 Conserved region in glutamate synthase JC965_08590 PF01493 GXGXG motif JC965_08590 PF00310 Glutamine amidotransferases class-II JC965_08595 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JC965_08595 PF07992 Pyridine nucleotide-disulphide oxidoreductase JC965_08615 PF14521 Lysine-specific metallo-endopeptidase JC965_08625 PF00271 Helicase conserved C-terminal domain JC965_08625 PF00270 DEAD/DEAH box helicase JC965_08645 PF08378 Nuclease-related domain JC965_08650 PF07759 Protein of unknown function (DUF1615) JC965_08655 PF00990 Diguanylate cyclase, GGDEF domain JC965_08660 PF08502 LeuA allosteric (dimerisation) domain JC965_08660 PF00682 HMGL-like JC965_08665 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JC965_08665 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JC965_08665 PF02142 MGS-like domain JC965_08670 PF00117 Glutamine amidotransferase class-I JC965_08670 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JC965_08675 PF01113 Dihydrodipicolinate reductase, N-terminus JC965_08675 PF05173 Dihydrodipicolinate reductase, C-terminus JC965_08685 PF01812 5-formyltetrahydrofolate cyclo-ligase family JC965_08690 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JC965_08695 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JC965_08695 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JC965_08695 PF01842 ACT domain JC965_08700 PF01219 Prokaryotic diacylglycerol kinase JC965_08705 PF00793 DAHP synthetase I family JC965_08710 PF00005 ABC transporter JC965_08715 PF01032 FecCD transport family JC965_08730 PF00437 Type II/IV secretion system protein JC965_08740 PF07664 Ferrous iron transport protein B C terminus JC965_08740 PF07670 Nucleoside recognition JC965_08740 PF17910 FeoB cytosolic helical domain JC965_08740 PF02421 Ferrous iron transport protein B JC965_08750 PF01253 Translation initiation factor SUI1 JC965_08755 PF01169 Uncharacterized protein family UPF0016 JC965_08780 PF01385 Probable transposase JC965_08780 PF07282 Putative transposase DNA-binding domain JC965_08780 PF12323 Helix-turn-helix domain JC965_08790 PF08281 Sigma-70, region 4 JC965_08790 PF04542 Sigma-70 region 2 JC965_08800 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JC965_08805 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JC965_08810 PF00563 EAL domain JC965_08810 PF08668 HDOD domain JC965_08815 PF00108 Thiolase, N-terminal domain JC965_08815 PF02803 Thiolase, C-terminal domain JC965_08820 PF09278 MerR, DNA binding JC965_08820 PF00376 MerR family regulatory protein JC965_08825 PF00375 Sodium:dicarboxylate symporter family JC965_08830 PF06865 Pyrimidine/purine nucleoside phosphorylase JC965_08835 PF03315 Serine dehydratase beta chain JC965_08835 PF03313 Serine dehydratase alpha chain JC965_08840 PF03313 Serine dehydratase alpha chain JC965_08840 PF03315 Serine dehydratase beta chain JC965_08855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_08855 PF03466 LysR substrate binding domain JC965_08865 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JC965_08870 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JC965_08870 PF01336 OB-fold nucleic acid binding domain JC965_08870 PF02811 PHP domain JC965_08870 PF07733 Bacterial DNA polymerase III alpha NTPase domain JC965_08870 PF14579 Helix-hairpin-helix motif JC965_08875 PF01351 Ribonuclease HII JC965_08880 PF02684 Lipid-A-disaccharide synthetase JC965_08885 PF00132 Bacterial transferase hexapeptide (six repeats) JC965_08885 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 JC965_08890 PF07977 FabA-like domain JC965_08895 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD JC965_08895 PF00132 Bacterial transferase hexapeptide (six repeats) JC965_08900 PF03938 Outer membrane protein (OmpH-like) JC965_08905 PF07244 Surface antigen variable number repeat JC965_08905 PF01103 Surface antigen JC965_08910 PF02163 Peptidase family M50 JC965_08910 PF17820 PDZ domain JC965_08915 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JC965_08915 PF13288 DXP reductoisomerase C-terminal domain JC965_08915 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JC965_08925 PF01255 Putative undecaprenyl diphosphate synthase JC965_08930 PF01765 Ribosome recycling factor JC965_08935 PF00696 Amino acid kinase family JC965_08940 PF00889 Elongation factor TS JC965_08945 PF00318 Ribosomal protein S2 JC965_08950 PF00557 Metallopeptidase family M24 JC965_08955 PF01842 ACT domain JC965_08955 PF08335 GlnD PII-uridylyltransferase JC965_08955 PF01966 HD domain JC965_08955 PF01909 Nucleotidyltransferase domain JC965_08960 PF00132 Bacterial transferase hexapeptide (six repeats) JC965_08960 PF14602 Hexapeptide repeat of succinyl-transferase JC965_08960 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal JC965_08965 PF11944 Protein of unknown function (DUF3461) JC965_08970 PF02378 Phosphotransferase system, EIIC JC965_08970 PF00367 phosphotransferase system, EIIB JC965_08975 PF07148 Maltose operon periplasmic protein precursor (MalM) JC965_08980 PF02264 LamB porin JC965_08990 PF00258 Flavodoxin JC965_08995 PF00849 RNA pseudouridylate synthase JC965_09000 PF04287 tRNA pseudouridine synthase C JC965_09030 PF00994 Probable molybdopterin binding domain JC965_09045 PF00194 Eukaryotic-type carbonic anhydrase JC965_09050 PF04227 Indigoidine synthase A like protein JC965_09055 PF00294 pfkB family carbohydrate kinase JC965_09060 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JC965_09060 PF07992 Pyridine nucleotide-disulphide oxidoreductase JC965_09060 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JC965_09060 PF13806 Rieske-like [2Fe-2S] domain JC965_09060 PF04324 BFD-like [2Fe-2S] binding domain JC965_09060 PF18267 Rubredoxin NAD+ reductase C-terminal domain JC965_09065 PF13806 Rieske-like [2Fe-2S] domain JC965_09065 PF07992 Pyridine nucleotide-disulphide oxidoreductase JC965_09065 PF18267 Rubredoxin NAD+ reductase C-terminal domain JC965_09065 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JC965_09065 PF04324 BFD-like [2Fe-2S] binding domain JC965_09065 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JC965_09070 PF00005 ABC transporter JC965_09075 PF00528 Binding-protein-dependent transport system inner membrane component JC965_09080 PF00005 ABC transporter JC965_09090 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JC965_09090 PF10414 Sirohaem synthase dimerisation region JC965_09090 PF14824 Sirohaem biosynthesis protein central JC965_09095 PF04324 BFD-like [2Fe-2S] binding domain JC965_09095 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JC965_09095 PF00384 Molybdopterin oxidoreductase JC965_09095 PF01568 Molydopterin dinucleotide binding domain JC965_09110 PF00582 Universal stress protein family JC965_09120 PF00171 Aldehyde dehydrogenase family JC965_09125 PF01472 PUA domain JC965_09125 PF00696 Amino acid kinase family JC965_09130 PF07417 Sigma factor-binding transcriptional regulator Crl JC965_09135 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) JC965_09140 PF00156 Phosphoribosyl transferase domain JC965_09145 PF01546 Peptidase family M20/M25/M40 JC965_09145 PF07687 Peptidase dimerisation domain JC965_09150 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JC965_09150 PF00005 ABC transporter JC965_09155 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JC965_09155 PF00005 ABC transporter JC965_09160 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JC965_09165 PF12911 N-terminal TM domain of oligopeptide transport permease C JC965_09165 PF00528 Binding-protein-dependent transport system inner membrane component JC965_09170 PF00528 Binding-protein-dependent transport system inner membrane component JC965_09175 PF00593 TonB dependent receptor JC965_09175 PF07715 TonB-dependent Receptor Plug Domain JC965_09185 PF01618 MotA/TolQ/ExbB proton channel family JC965_09190 PF01618 MotA/TolQ/ExbB proton channel family JC965_09195 PF02472 Biopolymer transport protein ExbD/TolR JC965_09210 PF06483 Chitinase C JC965_09210 PF00704 Glycosyl hydrolases family 18 JC965_09245 PF00749 tRNA synthetases class I (E and Q), catalytic domain JC965_09250 PF00749 tRNA synthetases class I (E and Q), catalytic domain JC965_09255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JC965_09255 PF00672 HAMP domain JC965_09260 PF13358 DDE superfamily endonuclease JC965_09280 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JC965_09280 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JC965_09285 PF03466 LysR substrate binding domain JC965_09285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_09290 PF01810 LysE type translocator JC965_09295 PF01136 Peptidase family U32 JC965_09295 PF12392 Collagenase JC965_09305 PF06906 Protein of unknown function (DUF1272) JC965_09315 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JC965_09315 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JC965_09320 PF00730 HhH-GPD superfamily base excision DNA repair protein JC965_09320 PF06029 AlkA N-terminal domain JC965_09320 PF02805 Metal binding domain of Ada JC965_09320 PF12833 Helix-turn-helix domain JC965_09325 PF02074 Carboxypeptidase Taq (M32) metallopeptidase JC965_09350 PF00106 short chain dehydrogenase JC965_09355 PF03573 outer membrane porin, OprD family JC965_09360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JC965_09365 PF00892 EamA-like transporter family JC965_09370 PF02447 GntP family permease JC965_09375 PF01370 NAD dependent epimerase/dehydratase family JC965_09380 PF01261 Xylose isomerase-like TIM barrel JC965_09385 PF00596 Class II Aldolase and Adducin N-terminal domain JC965_09390 PF17042 Nucleotide-binding C-terminal domain JC965_09390 PF07005 Sugar-binding N-terminal domain JC965_09395 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JC965_09395 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JC965_09400 PF00455 DeoR C terminal sensor domain JC965_09400 PF08220 DeoR-like helix-turn-helix domain JC965_09410 PF07995 Glucose / Sorbosone dehydrogenase JC965_09415 PF01740 STAS domain JC965_09415 PF00916 Sulfate permease family JC965_09420 PF03976 Polyphosphate kinase 2 (PPK2) JC965_09445 PF12728 Helix-turn-helix domain JC965_09445 PF02661 Fic/DOC family JC965_09455 PF00717 Peptidase S24-like JC965_09460 PF00271 Helicase conserved C-terminal domain JC965_09460 PF18339 RapA N-terminal Tudor like domain 1 JC965_09460 PF18337 RapA N-terminal Tudor like domain JC965_09460 PF00176 SNF2 family N-terminal domain JC965_09460 PF12137 RNA polymerase recycling family C-terminal JC965_09465 PF09382 RQC domain JC965_09465 PF00570 HRDC domain JC965_09465 PF00271 Helicase conserved C-terminal domain JC965_09465 PF00270 DEAD/DEAH box helicase JC965_09465 PF16124 RecQ zinc-binding JC965_09485 PF09382 RQC domain JC965_09485 PF16124 RecQ zinc-binding JC965_09485 PF00570 HRDC domain JC965_09485 PF00271 Helicase conserved C-terminal domain JC965_09485 PF00270 DEAD/DEAH box helicase JC965_09490 PF01695 IstB-like ATP binding protein JC965_09515 PF02629 CoA binding domain JC965_09515 PF00549 CoA-ligase JC965_09520 PF00549 CoA-ligase JC965_09520 PF08442 ATP-grasp domain JC965_09525 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JC965_09525 PF00364 Biotin-requiring enzyme JC965_09525 PF02817 e3 binding domain JC965_09530 PF00676 Dehydrogenase E1 component JC965_09530 PF16078 2-oxoglutarate dehydrogenase N-terminus JC965_09530 PF02779 Transketolase, pyrimidine binding domain JC965_09530 PF16870 2-oxoglutarate dehydrogenase C-terminal JC965_09535 PF13085 2Fe-2S iron-sulfur cluster binding domain JC965_09540 PF00890 FAD binding domain JC965_09540 PF02910 Fumarate reductase flavoprotein C-term JC965_09545 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JC965_09550 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JC965_09555 PF00285 Citrate synthase, C-terminal domain JC965_09570 PF02801 Beta-ketoacyl synthase, C-terminal domain JC965_09570 PF00109 Beta-ketoacyl synthase, N-terminal domain JC965_09575 PF01266 FAD dependent oxidoreductase JC965_09575 PF05430 S-adenosyl-L-methionine-dependent methyltransferase JC965_09585 PF03606 C4-dicarboxylate anaerobic carrier JC965_09600 PF01863 Protein of unknown function DUF45 JC965_09615 PF01197 Ribosomal protein L31 JC965_09620 PF00444 Ribosomal protein L36 JC965_09625 PF02311 AraC-like ligand binding domain JC965_09625 PF12833 Helix-turn-helix domain JC965_09630 PF02653 Branched-chain amino acid transport system / permease component JC965_09635 PF00005 ABC transporter JC965_09640 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JC965_09645 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JC965_09650 PF00596 Class II Aldolase and Adducin N-terminal domain JC965_09655 PF11762 L-arabinose isomerase C-terminal domain JC965_09655 PF02610 L-arabinose isomerase JC965_09660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_09660 PF03466 LysR substrate binding domain JC965_09665 PF00155 Aminotransferase class I and II JC965_09670 PF00795 Carbon-nitrogen hydrolase JC965_09675 PF00497 Bacterial extracellular solute-binding proteins, family 3 JC965_09685 PF09924 Uncharacterised conserved protein (DUF2156) JC965_09685 PF03706 Lysylphosphatidylglycerol synthase TM region JC965_09690 PF00149 Calcineurin-like phosphoesterase JC965_09695 PF08411 Exonuclease C-terminal JC965_09695 PF00929 Exonuclease JC965_09715 PF00665 Integrase core domain JC965_09720 PF11426 Tn7 transposition regulator TnsC JC965_09720 PF13401 AAA domain JC965_09725 PF06527 TniQ JC965_09725 PF15978 Tn7-like transposition protein D JC965_09745 PF01609 Transposase DDE domain JC965_09750 PF00563 EAL domain JC965_09750 PF00360 Phytochrome region JC965_09750 PF01590 GAF domain JC965_09750 PF00990 Diguanylate cyclase, GGDEF domain JC965_09770 PF03222 Tryptophan/tyrosine permease family JC965_09775 PF03222 Tryptophan/tyrosine permease family JC965_09780 PF01212 Beta-eliminating lyase JC965_09790 PF12801 4Fe-4S binding domain JC965_09800 PF18113 Rubredoxin binding C-terminal domain JC965_09800 PF07992 Pyridine nucleotide-disulphide oxidoreductase JC965_09805 PF00753 Metallo-beta-lactamase superfamily JC965_09805 PF00258 Flavodoxin JC965_09805 PF00301 Rubredoxin JC965_09810 PF01590 GAF domain JC965_09810 PF00158 Sigma-54 interaction domain JC965_09815 PF00356 Bacterial regulatory proteins, lacI family JC965_09820 PF13458 Periplasmic binding protein JC965_09825 PF02653 Branched-chain amino acid transport system / permease component JC965_09830 PF02653 Branched-chain amino acid transport system / permease component JC965_09830 PF11862 Domain of unknown function (DUF3382) JC965_09835 PF00005 ABC transporter JC965_09835 PF12399 Branched-chain amino acid ATP-binding cassette transporter JC965_09840 PF00005 ABC transporter JC965_09850 PF01810 LysE type translocator JC965_09855 PF00581 Rhodanese-like domain JC965_09860 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease JC965_09860 PF01694 Rhomboid family JC965_09865 PF12262 Bacterial virulence factor lipase N-terminal JC965_09870 PF04380 Membrane fusogenic activity JC965_09875 PF00175 Oxidoreductase NAD-binding domain JC965_09880 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase JC965_09890 PF07498 Rho termination factor, N-terminal domain JC965_09890 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JC965_09890 PF07497 Rho termination factor, RNA-binding domain JC965_09895 PF00085 Thioredoxin JC965_09900 PF00270 DEAD/DEAH box helicase JC965_09900 PF00271 Helicase conserved C-terminal domain JC965_09905 PF02541 Ppx/GppA phosphatase family JC965_09915 PF04445 Putative SAM-dependent methyltransferase JC965_09920 PF00563 EAL domain JC965_09920 PF03707 Bacterial signalling protein N terminal repeat JC965_09920 PF00990 Diguanylate cyclase, GGDEF domain JC965_09925 PF01432 Peptidase family M3 JC965_09930 PF00490 Delta-aminolevulinic acid dehydratase JC965_09935 PF01026 TatD related DNase JC965_09940 PF00902 Sec-independent protein translocase protein (TatC) JC965_09945 PF02416 mttA/Hcf106 family JC965_09950 PF02416 mttA/Hcf106 family JC965_09955 PF03109 ABC1 family JC965_09960 PF02036 SCP-2 sterol transfer family JC965_09965 PF01209 ubiE/COQ5 methyltransferase family JC965_09970 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JC965_09975 PF07969 Amidohydrolase family JC965_10005 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JC965_10010 PF00005 ABC transporter JC965_10025 PF04324 BFD-like [2Fe-2S] binding domain JC965_10025 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JC965_10025 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JC965_10025 PF18267 Rubredoxin NAD+ reductase C-terminal domain JC965_10025 PF07992 Pyridine nucleotide-disulphide oxidoreductase JC965_10030 PF13806 Rieske-like [2Fe-2S] domain JC965_10035 PF01226 Formate/nitrite transporter JC965_10040 PF10414 Sirohaem synthase dimerisation region JC965_10040 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JC965_10040 PF14824 Sirohaem biosynthesis protein central JC965_10045 PF03448 MgtE intracellular N domain JC965_10045 PF01769 Divalent cation transporter JC965_10045 PF00571 CBS domain JC965_10050 PF03737 Aldolase/RraA JC965_10055 PF02592 Putative vitamin uptake transporter JC965_10065 PF02696 Uncharacterized ACR, YdiU/UPF0061 family JC965_10070 PF00034 Cytochrome c JC965_10075 PF09382 RQC domain JC965_10075 PF16124 RecQ zinc-binding JC965_10075 PF00570 HRDC domain JC965_10075 PF00271 Helicase conserved C-terminal domain JC965_10075 PF00270 DEAD/DEAH box helicase JC965_10080 PF03061 Thioesterase superfamily JC965_10095 PF03473 MOSC domain JC965_10095 PF03475 3-alpha domain JC965_10100 PF00528 Binding-protein-dependent transport system inner membrane component JC965_10105 PF00528 Binding-protein-dependent transport system inner membrane component JC965_10110 PF00005 ABC transporter JC965_10110 PF08402 TOBE domain JC965_10115 PF13416 Bacterial extracellular solute-binding protein JC965_10120 PF13416 Bacterial extracellular solute-binding protein JC965_10130 PF00120 Glutamine synthetase, catalytic domain JC965_10135 PF01258 Prokaryotic dksA/traR C4-type zinc finger JC965_10150 PF05981 CreA protein JC965_10155 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JC965_10155 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JC965_10160 PF00012 Hsp70 protein JC965_10175 PF00128 Alpha amylase, catalytic domain JC965_10175 PF02903 Alpha amylase, N-terminal ig-like domain JC965_10190 PF05958 tRNA (Uracil-5-)-methyltransferase JC965_10195 PF00486 Transcriptional regulatory protein, C terminal JC965_10195 PF00072 Response regulator receiver domain JC965_10205 PF00672 HAMP domain JC965_10205 PF00512 His Kinase A (phospho-acceptor) domain JC965_10205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_10215 PF00390 Malic enzyme, N-terminal domain JC965_10215 PF03949 Malic enzyme, NAD binding domain JC965_10220 PF11066 Protein of unknown function (DUF2867) JC965_10220 PF13460 NAD(P)H-binding JC965_10235 PF00929 Exonuclease JC965_10240 PF00075 RNase H JC965_10245 PF08241 Methyltransferase domain JC965_10250 PF00753 Metallo-beta-lactamase superfamily JC965_10250 PF16123 Hydroxyacylglutathione hydrolase C-terminus JC965_10255 PF01464 Transglycosylase SLT domain JC965_10255 PF01476 LysM domain JC965_10260 PF03372 Endonuclease/Exonuclease/phosphatase family JC965_10270 PF03061 Thioesterase superfamily JC965_10280 PF00356 Bacterial regulatory proteins, lacI family JC965_10285 PF14718 Soluble lytic murein transglycosylase L domain JC965_10285 PF01464 Transglycosylase SLT domain JC965_10290 PF00990 Diguanylate cyclase, GGDEF domain JC965_10290 PF00563 EAL domain JC965_10290 PF03707 Bacterial signalling protein N terminal repeat JC965_10295 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JC965_10315 PF04357 TamB, inner membrane protein subunit of TAM complex JC965_10320 PF17243 POTRA domain TamA domain 1 JC965_10320 PF01103 Surface antigen JC965_10320 PF07244 Surface antigen variable number repeat JC965_10340 PF02627 Carboxymuconolactone decarboxylase family JC965_10345 PF07992 Pyridine nucleotide-disulphide oxidoreductase JC965_10345 PF00403 Heavy-metal-associated domain JC965_10345 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JC965_10350 PF13416 Bacterial extracellular solute-binding protein JC965_10360 PF00005 ABC transporter JC965_10365 PF01066 CDP-alcohol phosphatidyltransferase JC965_10370 PF13406 Transglycosylase SLT domain JC965_10375 PF01047 MarR family JC965_10385 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JC965_10385 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JC965_10385 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JC965_10385 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JC965_10390 PF17206 SeqA protein N-terminal domain JC965_10390 PF03925 SeqA protein C-terminal domain JC965_10395 PF12697 Alpha/beta hydrolase family JC965_10405 PF01402 Ribbon-helix-helix protein, copG family JC965_10410 PF00258 Flavodoxin JC965_10420 PF01475 Ferric uptake regulator family JC965_10425 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain JC965_10425 PF00749 tRNA synthetases class I (E and Q), catalytic domain JC965_10430 PF03173 Putative carbohydrate binding domain JC965_10430 PF02838 Glycosyl hydrolase family 20, domain 2 JC965_10430 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain JC965_10430 PF00728 Glycosyl hydrolase family 20, catalytic domain JC965_10435 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JC965_10435 PF00367 phosphotransferase system, EIIB JC965_10435 PF02378 Phosphotransferase system, EIIC JC965_10440 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JC965_10445 PF01979 Amidohydrolase family JC965_10450 PF00480 ROK family JC965_10450 PF01047 MarR family JC965_10470 PF03079 ARD/ARD' family JC965_10475 PF00860 Permease family JC965_10480 PF02733 Dak1 domain JC965_10485 PF02734 DAK2 domain JC965_10490 PF00391 PEP-utilising enzyme, mobile domain JC965_10490 PF03610 PTS system fructose IIA component JC965_10490 PF05524 PEP-utilising enzyme, N-terminal JC965_10490 PF00381 PTS HPr component phosphorylation site JC965_10495 PF00158 Sigma-54 interaction domain JC965_10495 PF00989 PAS fold JC965_10495 PF02954 Bacterial regulatory protein, Fis family JC965_10500 PF03466 LysR substrate binding domain JC965_10500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_10505 PF04371 Porphyromonas-type peptidyl-arginine deiminase JC965_10510 PF00795 Carbon-nitrogen hydrolase JC965_10515 PF13416 Bacterial extracellular solute-binding protein JC965_10520 PF04371 Porphyromonas-type peptidyl-arginine deiminase JC965_10525 PF00106 short chain dehydrogenase JC965_10530 PF01594 AI-2E family transporter JC965_10535 PF00293 NUDIX domain JC965_10555 PF00199 Catalase JC965_10555 PF06628 Catalase-related immune-responsive JC965_10560 PF00583 Acetyltransferase (GNAT) family JC965_10580 PF00990 Diguanylate cyclase, GGDEF domain JC965_10580 PF00072 Response regulator receiver domain JC965_10590 PF00005 ABC transporter JC965_10590 PF08402 TOBE domain JC965_10600 PF00528 Binding-protein-dependent transport system inner membrane component JC965_10615 PF07702 UTRA domain JC965_10615 PF00392 Bacterial regulatory proteins, gntR family JC965_10625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_10625 PF03466 LysR substrate binding domain JC965_10635 PF02678 Pirin JC965_10635 PF17954 Quercetinase C-terminal cupin domain JC965_10640 PF07681 DoxX JC965_10645 PF17946 RecC C-terminal domain JC965_10650 PF00580 UvrD/REP helicase N-terminal domain JC965_10650 PF12705 PD-(D/E)XK nuclease superfamily JC965_10650 PF13361 UvrD-like helicase C-terminal domain JC965_10655 PF13538 UvrD-like helicase C-terminal domain JC965_10675 PF01228 Glycine radical JC965_10680 PF00375 Sodium:dicarboxylate symporter family JC965_10685 PF00793 DAHP synthetase I family JC965_10690 PF13369 Transglutaminase-like superfamily JC965_10700 PF17827 PrmC N-terminal domain JC965_10700 PF13847 Methyltransferase domain JC965_10705 PF00472 RF-1 domain JC965_10705 PF03462 PCRF domain JC965_10710 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain JC965_10710 PF01488 Shikimate / quinate 5-dehydrogenase JC965_10710 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain JC965_10715 PF03550 Outer membrane lipoprotein LolB JC965_10720 PF00288 GHMP kinases N terminal domain JC965_10720 PF08544 GHMP kinases C terminal JC965_10730 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JC965_10730 PF14572 Phosphoribosyl synthetase-associated domain JC965_10735 PF01195 Peptidyl-tRNA hydrolase JC965_10740 PF06071 Protein of unknown function (DUF933) JC965_10740 PF01926 50S ribosome-binding GTPase JC965_10785 PF03600 Citrate transporter JC965_10785 PF02080 TrkA-C domain JC965_10790 PF04266 ASCH domain JC965_10795 PF07859 alpha/beta hydrolase fold JC965_10810 PF13419 Haloacid dehalogenase-like hydrolase JC965_10825 PF00171 Aldehyde dehydrogenase family JC965_10830 PF04958 Arginine N-succinyltransferase beta subunit JC965_10835 PF00202 Aminotransferase class-III JC965_10840 PF00117 Glutamine amidotransferase class-I JC965_10850 PF00579 tRNA synthetases class I (W and Y) JC965_10855 PF13419 Haloacid dehalogenase-like hydrolase JC965_10860 PF00834 Ribulose-phosphate 3 epimerase family JC965_10865 PF02086 D12 class N6 adenine-specific DNA methyltransferase JC965_10870 PF05036 Sporulation related domain JC965_10875 PF01761 3-dehydroquinate synthase JC965_10880 PF01202 Shikimate kinase JC965_10885 PF00263 Bacterial type II and III secretion system protein JC965_10885 PF11741 AMIN domain JC965_10885 PF07660 Secretin and TonB N terminus short domain JC965_10885 PF03958 Bacterial type II/III secretion system short domain JC965_10895 PF04350 Pilus assembly protein, PilO JC965_10905 PF11104 Type IV pilus assembly protein PilM; JC965_10910 PF00912 Transglycosylase JC965_10910 PF17092 Penicillin-binding protein OB-like domain JC965_10910 PF00905 Penicillin binding protein transpeptidase domain JC965_10915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_10915 PF03466 LysR substrate binding domain JC965_10930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_10930 PF03466 LysR substrate binding domain JC965_10950 PF03471 Transporter associated domain JC965_10950 PF03741 Integral membrane protein TerC family JC965_10955 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JC965_10960 PF08240 Alcohol dehydrogenase GroES-like domain JC965_10960 PF00107 Zinc-binding dehydrogenase JC965_10965 PF00962 Adenosine/AMP deaminase JC965_10970 PF13344 Haloacid dehalogenase-like hydrolase JC965_10980 PF13537 Glutamine amidotransferase domain JC965_10980 PF00733 Asparagine synthase JC965_10995 PF02798 Glutathione S-transferase, N-terminal domain JC965_10995 PF14497 Glutathione S-transferase, C-terminal domain JC965_11005 PF04209 homogentisate 1,2-dioxygenase JC965_11010 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JC965_11020 PF00849 RNA pseudouridylate synthase JC965_11040 PF00285 Citrate synthase, C-terminal domain JC965_11045 PF00694 Aconitase C-terminal domain JC965_11045 PF00330 Aconitase family (aconitate hydratase) JC965_11050 PF04303 PrpF protein JC965_11065 PF00593 TonB dependent receptor JC965_11065 PF07715 TonB-dependent Receptor Plug Domain JC965_11065 PF07660 Secretin and TonB N terminus short domain JC965_11075 PF01027 Inhibitor of apoptosis-promoting Bax1 JC965_11080 PF12805 FUSC-like inner membrane protein yccS JC965_11085 PF04358 DsrC like protein JC965_11090 PF05036 Sporulation related domain JC965_11095 PF08245 Mur ligase middle domain JC965_11095 PF02875 Mur ligase family, glutamate ligase domain JC965_11100 PF01039 Carboxyl transferase domain JC965_11100 PF17848 Acetyl-coA carboxylase zinc finger domain JC965_11105 PF01416 tRNA pseudouridine synthase JC965_11115 PF02774 Semialdehyde dehydrogenase, dimerisation domain JC965_11115 PF01118 Semialdehyde dehydrogenase, NAD binding domain JC965_11120 PF11890 Domain of unknown function (DUF3410) JC965_11120 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JC965_11120 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JC965_11145 PF08447 PAS fold JC965_11145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JC965_11150 PF00271 Helicase conserved C-terminal domain JC965_11150 PF00270 DEAD/DEAH box helicase JC965_11155 PF08534 Redoxin JC965_11160 PF00403 Heavy-metal-associated domain JC965_11165 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JC965_11165 PF11852 Domain of unknown function (DUF3372) JC965_11165 PF03714 Bacterial pullanase-associated domain JC965_11165 PF18494 Pullulanase Ins domain JC965_11165 PF17967 Pullulanase N2 domain JC965_11180 PF02583 Metal-sensitive transcriptional repressor JC965_11185 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) JC965_11190 PF01270 Glycosyl hydrolases family 8 JC965_11195 PF03170 Bacterial cellulose synthase subunit JC965_11200 PF00535 Glycosyl transferase family 2 JC965_11200 PF07238 PilZ domain JC965_11205 PF06564 Cellulose biosynthesis protein BcsQ JC965_11220 PF00155 Aminotransferase class I and II JC965_11225 PF03466 LysR substrate binding domain JC965_11225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_11235 PF04055 Radical SAM superfamily JC965_11240 PF11230 Protein of unknown function (DUF3029) JC965_11265 PF17200 Single Cache domain 2 JC965_11265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JC965_11265 PF00672 HAMP domain JC965_11270 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading JC965_11270 PF18416 N-acetylglucosamine binding protein domain 2 JC965_11275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_11275 PF03466 LysR substrate binding domain JC965_11280 PF00005 ABC transporter JC965_11280 PF12857 TOBE-like domain JC965_11285 PF00528 Binding-protein-dependent transport system inner membrane component JC965_11290 PF00528 Binding-protein-dependent transport system inner membrane component JC965_11320 PF02595 Glycerate kinase family JC965_11325 PF02447 GntP family permease JC965_11330 PF05651 Putative sugar diacid recognition JC965_11330 PF17853 GGDEF-like domain JC965_11330 PF13556 PucR C-terminal helix-turn-helix domain JC965_11335 PF06062 Uncharacterised protein family (UPF0231) JC965_11355 PF02594 Uncharacterised ACR, YggU family COG1872 JC965_11360 PF02325 YGGT family JC965_11365 PF03807 NADP oxidoreductase coenzyme F420-dependent JC965_11365 PF14748 Pyrroline-5-carboxylate reductase dimerisation JC965_11370 PF01168 Alanine racemase, N-terminal domain JC965_11375 PF00437 Type II/IV secretion system protein JC965_11380 PF00437 Type II/IV secretion system protein JC965_11385 PF03883 Peroxide stress protein YaaA JC965_11390 PF00270 DEAD/DEAH box helicase JC965_11390 PF00271 Helicase conserved C-terminal domain JC965_11395 PF05175 Methyltransferase small domain JC965_11400 PF05525 Branched-chain amino acid transport protein JC965_11415 PF01475 Ferric uptake regulator family JC965_11420 PF01207 Dihydrouridine synthase (Dus) JC965_11435 PF00216 Bacterial DNA-binding protein JC965_11440 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ JC965_11445 PF07238 PilZ domain JC965_11450 PF18073 Rubredoxin metal binding domain JC965_11465 PF18429 Domain of unknown function (DUF5609) JC965_11475 PF05231 MASE1 JC965_11475 PF13426 PAS domain JC965_11475 PF08448 PAS fold JC965_11475 PF08447 PAS fold JC965_11475 PF00990 Diguanylate cyclase, GGDEF domain JC965_11475 PF00563 EAL domain JC965_11480 PF05433 Glycine zipper 2TM domain JC965_11480 PF16998 17 kDa outer membrane surface antigen JC965_11485 PF01048 Phosphorylase superfamily JC965_11490 PF01676 Metalloenzyme superfamily JC965_11495 PF02885 Glycosyl transferase family, helical bundle domain JC965_11495 PF00591 Glycosyl transferase family, a/b domain JC965_11495 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain JC965_11500 PF01791 DeoC/LacD family aldolase JC965_11510 PF07670 Nucleoside recognition JC965_11510 PF07662 Na+ dependent nucleoside transporter C-terminus JC965_11510 PF01773 Na+ dependent nucleoside transporter N-terminus JC965_11515 PF01026 TatD related DNase JC965_11520 PF07963 Prokaryotic N-terminal methylation motif JC965_11535 PF05958 tRNA (Uracil-5-)-methyltransferase JC965_11535 PF01938 TRAM domain JC965_11540 PF00909 Ammonium Transporter Family JC965_11560 PF02378 Phosphotransferase system, EIIC JC965_11560 PF00367 phosphotransferase system, EIIB JC965_11580 PF12323 Helix-turn-helix domain JC965_11585 PF12323 Helix-turn-helix domain JC965_11585 PF07282 Putative transposase DNA-binding domain JC965_11585 PF01385 Probable transposase JC965_11590 PF07282 Putative transposase DNA-binding domain JC965_11590 PF01385 Probable transposase JC965_11590 PF12323 Helix-turn-helix domain JC965_11595 PF02508 Rnf-Nqr subunit, membrane protein JC965_11600 PF04060 Putative Fe-S cluster JC965_11605 PF10531 SLBB domain JC965_11605 PF13375 RnfC Barrel sandwich hybrid domain JC965_11605 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JC965_11605 PF12838 4Fe-4S dicluster domain JC965_11610 PF03116 NQR2, RnfD, RnfE family JC965_11615 PF04205 FMN-binding domain JC965_11620 PF02508 Rnf-Nqr subunit, membrane protein JC965_11625 PF10576 Iron-sulfur binding domain of endonuclease III JC965_11625 PF00730 HhH-GPD superfamily base excision DNA repair protein JC965_11625 PF00633 Helix-hairpin-helix motif JC965_11630 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JC965_11635 PF12729 Four helix bundle sensory module for signal transduction JC965_11635 PF00672 HAMP domain JC965_11635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JC965_11640 PF02535 ZIP Zinc transporter JC965_11650 PF01048 Phosphorylase superfamily JC965_11660 PF01497 Periplasmic binding protein JC965_11665 PF02719 Polysaccharide biosynthesis protein JC965_11670 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JC965_11680 PF02348 Cytidylyltransferase JC965_11685 PF00202 Aminotransferase class-III JC965_11700 PF03102 NeuB family JC965_11700 PF08666 SAF domain JC965_11720 PF02561 Flagellar protein FliS JC965_11725 PF02465 Flagellar hook-associated protein 2 N-terminus JC965_11725 PF07195 Flagellar hook-associated protein 2 C-terminus JC965_11725 PF07196 Flagellin hook IN motif JC965_11735 PF00669 Bacterial flagellin N-terminal helical region JC965_11735 PF00700 Bacterial flagellin C-terminal helical region JC965_11735 PF07196 Flagellin hook IN motif JC965_11740 PF00700 Bacterial flagellin C-terminal helical region JC965_11740 PF00669 Bacterial flagellin N-terminal helical region JC965_11740 PF07196 Flagellin hook IN motif JC965_11745 PF00700 Bacterial flagellin C-terminal helical region JC965_11745 PF00669 Bacterial flagellin N-terminal helical region JC965_11745 PF07196 Flagellin hook IN motif JC965_11750 PF03458 UPF0126 domain JC965_11760 PF02926 THUMP domain JC965_11760 PF02568 Thiamine biosynthesis protein (ThiI) JC965_11770 PF00912 Transglycosylase JC965_11770 PF06832 Penicillin-Binding Protein C-terminus Family JC965_11770 PF00905 Penicillin binding protein transpeptidase domain JC965_11775 PF07703 Alpha-2-macroglobulin bait region domain JC965_11775 PF07678 A-macroglobulin TED domain JC965_11775 PF01835 MG2 domain JC965_11775 PF17962 Bacterial macroglobulin domain 6 JC965_11775 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain JC965_11775 PF11974 Bacterial alpha-2-macroglobulin MG3 domain JC965_11775 PF00207 Alpha-2-macroglobulin family JC965_11775 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain JC965_11775 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain JC965_11800 PF01502 Phosphoribosyl-AMP cyclohydrolase JC965_11800 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase JC965_11805 PF00977 Histidine biosynthesis protein JC965_11810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_11810 PF00512 His Kinase A (phospho-acceptor) domain JC965_11810 PF01627 Hpt domain JC965_11810 PF00072 Response regulator receiver domain JC965_11815 PF00990 Diguanylate cyclase, GGDEF domain JC965_11815 PF08448 PAS fold JC965_11820 PF00072 Response regulator receiver domain JC965_11825 PF00977 Histidine biosynthesis protein JC965_11830 PF00117 Glutamine amidotransferase class-I JC965_11835 PF00475 Imidazoleglycerol-phosphate dehydratase JC965_11835 PF08645 Polynucleotide kinase 3 phosphatase JC965_11840 PF00155 Aminotransferase class I and II JC965_11845 PF00815 Histidinol dehydrogenase JC965_11850 PF01634 ATP phosphoribosyltransferase JC965_11850 PF08029 HisG, C-terminal domain JC965_11860 PF13307 Helicase C-terminal domain JC965_11860 PF04851 Type III restriction enzyme, res subunit JC965_11865 PF00814 Glycoprotease family JC965_11875 PF00561 alpha/beta hydrolase fold JC965_11880 PF13193 AMP-binding enzyme C-terminal domain JC965_11880 PF00501 AMP-binding enzyme JC965_11885 PF01612 3'-5' exonuclease JC965_11885 PF00570 HRDC domain JC965_11895 PF00892 EamA-like transporter family JC965_11900 PF12833 Helix-turn-helix domain JC965_11900 PF02805 Metal binding domain of Ada JC965_11900 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JC965_11900 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JC965_11905 PF01207 Dihydrouridine synthase (Dus) JC965_11910 PF04304 Protein of unknown function (DUF454) JC965_11915 PF00156 Phosphoribosyl transferase domain JC965_11920 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding JC965_11920 PF12170 DNA polymerase III tau subunit V interacting with alpha JC965_11920 PF12169 DNA polymerase III subunits gamma and tau domain III JC965_11925 PF02575 YbaB/EbfC DNA-binding family JC965_11930 PF03466 LysR substrate binding domain JC965_11930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_11935 PF05726 Pirin C-terminal cupin domain JC965_11935 PF02678 Pirin JC965_11940 PF07670 Nucleoside recognition JC965_11945 PF00196 Bacterial regulatory proteins, luxR family JC965_11945 PF00072 Response regulator receiver domain JC965_11950 PF00571 CBS domain JC965_11950 PF01368 DHH family JC965_11950 PF01743 Poly A polymerase head domain JC965_11950 PF02272 DHHA1 domain JC965_11955 PF11898 Domain of unknown function (DUF3418) JC965_11955 PF04408 Helicase associated domain (HA2) JC965_11955 PF00271 Helicase conserved C-terminal domain JC965_11955 PF00270 DEAD/DEAH box helicase JC965_11955 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold JC965_11970 PF04333 MlaA lipoprotein JC965_11980 PF03918 Cytochrome C biogenesis protein JC965_11985 PF08534 Redoxin JC965_11990 PF01578 Cytochrome C assembly protein JC965_11990 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JC965_11995 PF03100 CcmE JC965_12000 PF04995 Heme exporter protein D (CcmD) JC965_12005 PF01578 Cytochrome C assembly protein JC965_12010 PF03379 CcmB protein JC965_12015 PF00005 ABC transporter JC965_12025 PF01584 CheW-like domain JC965_12035 PF13614 AAA domain JC965_12040 PF00691 OmpA family JC965_12040 PF13677 Membrane MotB of proton-channel complex MotA/MotB JC965_12045 PF01618 MotA/TolQ/ExbB proton channel family JC965_12050 PF01339 CheB methylesterase JC965_12050 PF00072 Response regulator receiver domain JC965_12055 PF02895 Signal transducing histidine kinase, homodimeric domain JC965_12055 PF00072 Response regulator receiver domain JC965_12055 PF01584 CheW-like domain JC965_12055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_12055 PF01627 Hpt domain JC965_12060 PF04344 Chemotaxis phosphatase, CheZ JC965_12065 PF00072 Response regulator receiver domain JC965_12070 PF04539 Sigma-70 region 3 JC965_12070 PF04542 Sigma-70 region 2 JC965_12070 PF04545 Sigma-70, region 4 JC965_12075 PF10609 NUBPL iron-transfer P-loop NTPase JC965_12080 PF00448 SRP54-type protein, GTPase domain JC965_12085 PF00771 FHIPEP family JC965_12090 PF01312 FlhB HrpN YscU SpaS Family JC965_12095 PF01311 Bacterial export proteins, family 1 JC965_12100 PF01313 Bacterial export proteins, family 3 JC965_12105 PF00813 FliP family JC965_12110 PF04347 Flagellar biosynthesis protein, FliO JC965_12115 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JC965_12120 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JC965_12120 PF02154 Flagellar motor switch protein FliM JC965_12140 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JC965_12140 PF18269 T3SS EscN ATPase C-terminal domain JC965_12150 PF01706 FliG C-terminal domain JC965_12150 PF14841 FliG middle domain JC965_12150 PF14842 FliG N-terminal domain JC965_12155 PF08345 Flagellar M-ring protein C-terminal JC965_12155 PF01514 Secretory protein of YscJ/FliF family JC965_12160 PF02049 Flagellar hook-basal body complex protein FliE JC965_12170 PF03960 ArsC family JC965_12175 PF01758 Sodium Bile acid symporter family JC965_12180 PF01022 Bacterial regulatory protein, arsR family JC965_12185 PF00072 Response regulator receiver domain JC965_12195 PF00884 Sulfatase JC965_12195 PF08019 Phosphoethanolamine transferase EptA/EptB JC965_12200 PF01709 Transcriptional regulator JC965_12205 PF01336 OB-fold nucleic acid binding domain JC965_12205 PF00152 tRNA synthetases class II (D, K and N) JC965_12205 PF02938 GAD domain JC965_12210 PF01904 Protein of unknown function DUF72 JC965_12215 PF13649 Methyltransferase domain JC965_12220 PF08003 Protein of unknown function (DUF1698) JC965_12240 PF03466 LysR substrate binding domain JC965_12240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_12245 PF00877 NlpC/P60 family JC965_12255 PF00171 Aldehyde dehydrogenase family JC965_12260 PF08359 YsiA-like protein, C-terminal region JC965_12260 PF00440 Bacterial regulatory proteins, tetR family JC965_12270 PF00465 Iron-containing alcohol dehydrogenase JC965_12275 PF00291 Pyridoxal-phosphate dependent enzyme JC965_12295 PF01554 MatE JC965_12305 PF04325 Protein of unknown function (DUF465) JC965_12310 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase JC965_12310 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JC965_12310 PF10371 Domain of unknown function JC965_12310 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II JC965_12310 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg JC965_12315 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JC965_12315 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JC965_12315 PF07992 Pyridine nucleotide-disulphide oxidoreductase JC965_12320 PF00111 2Fe-2S iron-sulfur cluster binding domain JC965_12320 PF03476 MOSC N-terminal beta barrel domain JC965_12320 PF03473 MOSC domain JC965_12320 PF00111 2Fe-2S iron-sulfur cluster binding domain JC965_12320 PF03476 MOSC N-terminal beta barrel domain JC965_12320 PF03473 MOSC domain JC965_12325 PF01435 Peptidase family M48 JC965_12335 PF12697 Alpha/beta hydrolase family JC965_12335 PF08241 Methyltransferase domain JC965_12340 PF00155 Aminotransferase class I and II JC965_12345 PF04055 Radical SAM superfamily JC965_12345 PF06968 Biotin and Thiamin Synthesis associated domain JC965_12350 PF00202 Aminotransferase class-III JC965_12365 PF00152 tRNA synthetases class II (D, K and N) JC965_12365 PF01336 OB-fold nucleic acid binding domain JC965_12370 PF00583 Acetyltransferase (GNAT) family JC965_12370 PF13380 CoA binding domain JC965_12370 PF13607 Succinyl-CoA ligase like flavodoxin domain JC965_12380 PF03466 LysR substrate binding domain JC965_12380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_12385 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain JC965_12385 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain JC965_12390 PF00342 Phosphoglucose isomerase JC965_12400 PF05552 Conserved TM helix JC965_12400 PF00924 Mechanosensitive ion channel JC965_12410 PF00440 Bacterial regulatory proteins, tetR family JC965_12415 PF00692 dUTPase JC965_12420 PF04127 DNA / pantothenate metabolism flavoprotein JC965_12420 PF02441 Flavoprotein JC965_12425 PF04002 RadC-like JAB domain JC965_12430 PF00830 Ribosomal L28 family JC965_12435 PF00471 Ribosomal protein L33 JC965_12445 PF06827 Zinc finger found in FPG and IleRS JC965_12445 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JC965_12445 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JC965_12450 PF04393 Protein of unknown function (DUF535) JC965_12455 PF01467 Cytidylyltransferase-like JC965_12460 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JC965_12465 PF00535 Glycosyl transferase family 2 JC965_12470 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JC965_12475 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) JC965_12495 PF18395 Cas3 C-terminal domain JC965_12495 PF18019 HD domain JC965_12500 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) JC965_12510 PF09344 CT1975-like protein JC965_12520 PF08798 CRISPR associated protein JC965_12525 PF01867 CRISPR associated protein Cas1 JC965_12530 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) JC965_12545 PF13309 HTH domain JC965_12545 PF08348 YheO-like PAS domain JC965_12550 PF03313 Serine dehydratase alpha chain JC965_12555 PF13525 Outer membrane lipoprotein JC965_12560 PF01479 S4 domain JC965_12560 PF00849 RNA pseudouridylate synthase JC965_12565 PF02578 Multi-copper polyphenol oxidoreductase laccase JC965_12570 PF00004 ATPase family associated with various cellular activities (AAA) JC965_12570 PF07724 AAA domain (Cdc48 subfamily) JC965_12570 PF10431 C-terminal, D2-small domain, of ClpB protein JC965_12570 PF17871 AAA lid domain JC965_12570 PF02861 Clp amino terminal domain, pathogenicity island component JC965_12580 PF03590 Aspartate-ammonia ligase JC965_12585 PF01037 Lrp/AsnC ligand binding domain JC965_12595 PF00571 CBS domain JC965_12595 PF00478 IMP dehydrogenase / GMP reductase domain JC965_12615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_12615 PF00512 His Kinase A (phospho-acceptor) domain JC965_12625 PF00072 Response regulator receiver domain JC965_12625 PF00158 Sigma-54 interaction domain JC965_12630 PF06496 Protein of unknown function (DUF1097) JC965_12635 PF00174 Oxidoreductase molybdopterin binding domain JC965_12640 PF01794 Ferric reductase like transmembrane component JC965_12655 PF00072 Response regulator receiver domain JC965_12655 PF00486 Transcriptional regulatory protein, C terminal JC965_12660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_12670 PF18364 Molybdopterin oxidoreductase N-terminal domain JC965_12670 PF00384 Molybdopterin oxidoreductase JC965_12670 PF01568 Molydopterin dinucleotide binding domain JC965_12675 PF03264 NapC/NirT cytochrome c family, N-terminal region JC965_12680 PF01131 DNA topoisomerase JC965_12680 PF01751 Toprim domain JC965_12685 PF02386 Cation transport protein JC965_12690 PF02254 TrkA-N domain JC965_12690 PF02080 TrkA-C domain JC965_12695 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JC965_12695 PF01565 FAD binding domain JC965_12700 PF02237 Biotin protein ligase C terminal domain JC965_12700 PF03099 Biotin/lipoate A/B protein ligase family JC965_12700 PF08279 HTH domain JC965_12705 PF00485 Phosphoribulokinase / Uridine kinase family JC965_12720 PF00009 Elongation factor Tu GTP binding domain JC965_12720 PF03144 Elongation factor Tu domain 2 JC965_12720 PF03143 Elongation factor Tu C-terminal domain JC965_12735 PF00664 ABC transporter transmembrane region JC965_12735 PF00005 ABC transporter JC965_12740 PF00005 ABC transporter JC965_12740 PF00664 ABC transporter transmembrane region JC965_12745 PF00512 His Kinase A (phospho-acceptor) domain JC965_12745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_12745 PF01627 Hpt domain JC965_12745 PF00072 Response regulator receiver domain JC965_12745 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JC965_12745 PF00672 HAMP domain JC965_12750 PF00085 Thioredoxin JC965_12755 PF00939 Sodium:sulfate symporter transmembrane region JC965_12765 PF00343 Carbohydrate phosphorylase JC965_12785 PF00425 chorismate binding enzyme JC965_12785 PF04715 Anthranilate synthase component I, N terminal region JC965_12790 PF00293 NUDIX domain JC965_12795 PF03222 Tryptophan/tyrosine permease family JC965_12800 PF00375 Sodium:dicarboxylate symporter family JC965_12805 PF09382 RQC domain JC965_12805 PF00570 HRDC domain JC965_12805 PF16124 RecQ zinc-binding JC965_12805 PF00271 Helicase conserved C-terminal domain JC965_12805 PF00270 DEAD/DEAH box helicase JC965_12810 PF06798 PrkA serine protein kinase C-terminal domain JC965_12810 PF08298 PrkA AAA domain JC965_12815 PF04285 Protein of unknown function (DUF444) JC965_12820 PF04293 SpoVR like protein JC965_12825 PF07840 FadR C-terminal domain JC965_12825 PF00392 Bacterial regulatory proteins, gntR family JC965_12830 PF06450 Bacterial Na+/H+ antiporter B (NhaB) JC965_12835 PF02600 Disulfide bond formation protein DsbB JC965_12840 PF09335 SNARE associated Golgi protein JC965_12850 PF00271 Helicase conserved C-terminal domain JC965_12850 PF12344 Ultra-violet resistance protein B JC965_12850 PF17757 UvrB interaction domain JC965_12850 PF02151 UvrB/uvrC motif JC965_12850 PF04851 Type III restriction enzyme, res subunit JC965_12860 PF02080 TrkA-C domain JC965_12860 PF06826 Predicted Permease Membrane Region JC965_12870 PF00005 ABC transporter JC965_12870 PF12848 ABC transporter JC965_12875 PF13145 PPIC-type PPIASE domain JC965_12880 PF00216 Bacterial DNA-binding protein JC965_12885 PF00004 ATPase family associated with various cellular activities (AAA) JC965_12885 PF02190 ATP-dependent protease La (LON) substrate-binding domain JC965_12885 PF05362 Lon protease (S16) C-terminal proteolytic domain JC965_12890 PF06689 ClpX C4-type zinc finger JC965_12890 PF10431 C-terminal, D2-small domain, of ClpB protein JC965_12890 PF07724 AAA domain (Cdc48 subfamily) JC965_12895 PF00574 Clp protease JC965_12900 PF05698 Bacterial trigger factor protein (TF) C-terminus JC965_12900 PF05697 Bacterial trigger factor protein (TF) JC965_12900 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JC965_12915 PF02687 FtsX-like permease family JC965_12915 PF12704 MacB-like periplasmic core domain JC965_12920 PF00005 ABC transporter JC965_12925 PF12704 MacB-like periplasmic core domain JC965_12925 PF02687 FtsX-like permease family JC965_12935 PF02559 CarD-like/TRCF domain JC965_12935 PF00271 Helicase conserved C-terminal domain JC965_12935 PF03461 TRCF domain JC965_12935 PF17757 UvrB interaction domain JC965_12935 PF00270 DEAD/DEAH box helicase JC965_12940 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain JC965_12950 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JC965_12955 PF00892 EamA-like transporter family JC965_12965 PF00300 Histidine phosphatase superfamily (branch 1) JC965_12970 PF00675 Insulinase (Peptidase family M16) JC965_12970 PF16187 Middle or third domain of peptidase_M16 JC965_12970 PF05193 Peptidase M16 inactive domain JC965_12975 PF05724 Thiopurine S-methyltransferase (TPMT) JC965_12985 PF01047 MarR family JC965_13000 PF02540 NAD synthase JC965_13000 PF00958 GMP synthase C terminal domain JC965_13000 PF00117 Glutamine amidotransferase class-I JC965_13005 PF00571 CBS domain JC965_13005 PF00478 IMP dehydrogenase / GMP reductase domain JC965_13020 PF04363 Protein of unknown function (DUF496) JC965_13030 PF04751 Protein of unknown function (DUF615) JC965_13035 PF01523 Putative modulator of DNA gyrase JC965_13040 PF07719 Tetratricopeptide repeat JC965_13040 PF07219 HemY protein N-terminus JC965_13045 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase JC965_13050 PF02602 Uroporphyrinogen-III synthase HemD JC965_13055 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain JC965_13055 PF03900 Porphobilinogen deaminase, C-terminal domain JC965_13060 PF01295 Adenylate cyclase, class-I JC965_13060 PF12633 Adenylate cyclase NT domain JC965_13065 PF02230 Phospholipase/Carboxylesterase JC965_13070 PF01491 Frataxin-like domain JC965_13080 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JC965_13080 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JC965_13085 PF01678 Diaminopimelate epimerase JC965_13095 PF02899 Phage integrase, N-terminal SAM-like domain JC965_13095 PF00589 Phage integrase family JC965_13100 PF13419 Haloacid dehalogenase-like hydrolase JC965_13110 PF07722 Peptidase C26 JC965_13130 PF04307 LexA-binding, inner membrane-associated putative hydrolase JC965_13135 PF00994 Probable molybdopterin binding domain JC965_13135 PF02464 Competence-damaged protein JC965_13140 PF01966 HD domain JC965_13140 PF12072 Domain of unknown function (DUF3552) JC965_13140 PF00013 KH domain JC965_13145 PF04204 Homoserine O-succinyltransferase JC965_13155 PF01037 Lrp/AsnC ligand binding domain JC965_13170 PF00145 C-5 cytosine-specific DNA methylase JC965_13170 PF01381 Helix-turn-helix JC965_13195 PF01695 IstB-like ATP binding protein JC965_13200 PF00990 Diguanylate cyclase, GGDEF domain JC965_13205 PF00773 RNB domain JC965_13205 PF08206 Ribonuclease B OB domain JC965_13205 PF08461 Ribonuclease R winged-helix domain JC965_13205 PF17876 Cold shock domain JC965_13205 PF00575 S1 RNA binding domain JC965_13230 PF08032 RNA 2'-O ribose methyltransferase substrate binding JC965_13230 PF00588 SpoU rRNA Methylase family JC965_13240 PF13673 Acetyltransferase (GNAT) domain JC965_13245 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JC965_13245 PF02272 DHHA1 domain JC965_13245 PF01411 tRNA synthetases class II (A) JC965_13250 PF01566 Natural resistance-associated macrophage protein JC965_13255 PF01250 Ribosomal protein S6 JC965_13260 PF01084 Ribosomal protein S18 JC965_13265 PF03948 Ribosomal protein L9, C-terminal domain JC965_13265 PF01281 Ribosomal protein L9, N-terminal domain JC965_13270 PF00175 Oxidoreductase NAD-binding domain JC965_13270 PF00970 Oxidoreductase FAD-binding domain JC965_13290 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JC965_13300 PF08990 Erythronolide synthase docking JC965_13300 PF08659 KR domain JC965_13300 PF00698 Acyl transferase domain JC965_13300 PF00550 Phosphopantetheine attachment site JC965_13300 PF08240 Alcohol dehydrogenase GroES-like domain JC965_13300 PF14765 Polyketide synthase dehydratase JC965_13300 PF16197 Ketoacyl-synthetase C-terminal extension JC965_13300 PF02801 Beta-ketoacyl synthase, C-terminal domain JC965_13300 PF00109 Beta-ketoacyl synthase, N-terminal domain JC965_13305 PF09335 SNARE associated Golgi protein JC965_13310 PF05193 Peptidase M16 inactive domain JC965_13310 PF00675 Insulinase (Peptidase family M16) JC965_13315 PF04262 Glutamate-cysteine ligase JC965_13320 PF03605 Anaerobic c4-dicarboxylate membrane transporter JC965_13325 PF10415 Fumarase C C-terminus JC965_13325 PF00206 Lyase JC965_13330 PF04186 FxsA cytoplasmic membrane protein JC965_13335 PF01554 MatE JC965_13340 PF00166 Chaperonin 10 Kd subunit JC965_13345 PF00118 TCP-1/cpn60 chaperonin family JC965_13355 PF03707 Bacterial signalling protein N terminal repeat JC965_13355 PF00563 EAL domain JC965_13355 PF00990 Diguanylate cyclase, GGDEF domain JC965_13365 PF00849 RNA pseudouridylate synthase JC965_13370 PF18337 RapA N-terminal Tudor like domain JC965_13370 PF12137 RNA polymerase recycling family C-terminal JC965_13370 PF00176 SNF2 family N-terminal domain JC965_13370 PF18339 RapA N-terminal Tudor like domain 1 JC965_13370 PF00271 Helicase conserved C-terminal domain JC965_13385 PF13847 Methyltransferase domain JC965_13390 PF00027 Cyclic nucleotide-binding domain JC965_13390 PF13545 Crp-like helix-turn-helix domain JC965_13395 PF02566 OsmC-like protein JC965_13410 PF00485 Phosphoribulokinase / Uridine kinase family JC965_13415 PF06794 Uncharacterised protein family (UPF0270) JC965_13420 PF00360 Phytochrome region JC965_13420 PF01590 GAF domain JC965_13420 PF00563 EAL domain JC965_13420 PF00990 Diguanylate cyclase, GGDEF domain JC965_13425 PF00561 alpha/beta hydrolase fold JC965_13430 PF00072 Response regulator receiver domain JC965_13430 PF01584 CheW-like domain JC965_13440 PF09526 Probable metal-binding protein (DUF2387) JC965_13445 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JC965_13450 PF04102 SlyX JC965_13460 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JC965_13460 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JC965_13465 PF02954 Bacterial regulatory protein, Fis family JC965_13465 PF00158 Sigma-54 interaction domain JC965_13465 PF00072 Response regulator receiver domain JC965_13490 PF00953 Glycosyl transferase family 4 JC965_13495 PF02706 Chain length determinant protein JC965_13510 PF04337 Protein of unknown function, DUF480 JC965_13515 PF04434 SWIM zinc finger JC965_13515 PF00176 SNF2 family N-terminal domain JC965_13515 PF00271 Helicase conserved C-terminal domain JC965_13520 PF05472 DNA replication terminus site-binding protein (Ter protein) JC965_13530 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family JC965_13535 PF00676 Dehydrogenase E1 component JC965_13540 PF02780 Transketolase, C-terminal domain JC965_13540 PF02779 Transketolase, pyrimidine binding domain JC965_13545 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JC965_13545 PF02817 e3 binding domain JC965_13545 PF00364 Biotin-requiring enzyme JC965_13550 PF00313 'Cold-shock' DNA-binding domain JC965_13585 PF03989 DNA gyrase C-terminal domain, beta-propeller JC965_13585 PF00521 DNA gyrase/topoisomerase IV, subunit A JC965_13590 PF00204 DNA gyrase B JC965_13590 PF00986 DNA gyrase B subunit, carboxyl terminus JC965_13590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_13590 PF01751 Toprim domain JC965_13595 PF04632 Fusaric acid resistance protein family JC965_13600 PF00529 HlyD membrane-fusion protein of T1SS JC965_13600 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JC965_13605 PF07869 Protein of unknown function (DUF1656) JC965_13615 PF00293 NUDIX domain JC965_13620 PF05728 Uncharacterised protein family (UPF0227) JC965_13625 PF00149 Calcineurin-like phosphoesterase JC965_13630 PF06853 Protein of unknown function (DUF1249) JC965_13635 PF00293 NUDIX domain JC965_13640 PF02321 Outer membrane efflux protein JC965_13645 PF00294 pfkB family carbohydrate kinase JC965_13645 PF01467 Cytidylyltransferase-like JC965_13650 PF03279 Bacterial lipid A biosynthesis acyltransferase JC965_13655 PF02872 5'-nucleotidase, C-terminal domain JC965_13655 PF00149 Calcineurin-like phosphoesterase JC965_13660 PF01810 LysE type translocator JC965_13665 PF03472 Autoinducer binding domain JC965_13665 PF00196 Bacterial regulatory proteins, luxR family JC965_13670 PF00765 Autoinducer synthase JC965_13675 PF03466 LysR substrate binding domain JC965_13675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_13680 PF17876 Cold shock domain JC965_13680 PF08206 Ribonuclease B OB domain JC965_13680 PF00773 RNB domain JC965_13685 PF02378 Phosphotransferase system, EIIC JC965_13685 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JC965_13685 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JC965_13690 PF08125 Mannitol dehydrogenase C-terminal domain JC965_13690 PF01232 Mannitol dehydrogenase Rossmann domain JC965_13695 PF05068 Mannitol repressor JC965_13700 PF02080 TrkA-C domain JC965_13700 PF03471 Transporter associated domain JC965_13700 PF00999 Sodium/hydrogen exchanger family JC965_13715 PF01544 CorA-like Mg2+ transporter protein JC965_13720 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 JC965_13735 PF17837 4'-phosphopantetheinyl transferase N-terminal domain JC965_13735 PF01648 4'-phosphopantetheinyl transferase superfamily JC965_13740 PF01497 Periplasmic binding protein JC965_13745 PF00550 Phosphopantetheine attachment site JC965_13745 PF00975 Thioesterase domain JC965_13745 PF00668 Condensation domain JC965_13745 PF13193 AMP-binding enzyme C-terminal domain JC965_13745 PF00501 AMP-binding enzyme JC965_13750 PF00501 AMP-binding enzyme JC965_13750 PF00550 Phosphopantetheine attachment site JC965_13750 PF07993 Male sterility protein JC965_13750 PF00668 Condensation domain JC965_13750 PF13193 AMP-binding enzyme C-terminal domain JC965_13760 PF00501 AMP-binding enzyme JC965_13760 PF13193 AMP-binding enzyme C-terminal domain JC965_13760 PF00668 Condensation domain JC965_13760 PF00550 Phosphopantetheine attachment site JC965_13760 PF00975 Thioesterase domain JC965_13765 PF00550 Phosphopantetheine attachment site JC965_13765 PF00857 Isochorismatase family JC965_13770 PF13193 AMP-binding enzyme C-terminal domain JC965_13770 PF00501 AMP-binding enzyme JC965_13775 PF00425 chorismate binding enzyme JC965_13780 PF07273 Protein of unknown function (DUF1439) JC965_13790 PF00483 Nucleotidyl transferase JC965_13795 PF00563 EAL domain JC965_13795 PF03707 Bacterial signalling protein N terminal repeat JC965_13795 PF00990 Diguanylate cyclase, GGDEF domain JC965_13810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JC965_13810 PF00672 HAMP domain JC965_13810 PF17200 Single Cache domain 2 JC965_13815 PF00294 pfkB family carbohydrate kinase JC965_13820 PF01124 MAPEG family JC965_13825 PF00762 Ferrochelatase JC965_13830 PF05191 Adenylate kinase, active site lid JC965_13835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_13835 PF00183 Hsp90 protein JC965_13840 PF02132 RecR protein JC965_13840 PF13662 Toprim domain JC965_13860 PF01810 LysE type translocator JC965_13865 PF07690 Major Facilitator Superfamily JC965_13875 PF00210 Ferritin-like domain JC965_13880 PF05230 MASE2 domain JC965_13880 PF00990 Diguanylate cyclase, GGDEF domain JC965_13885 PF12241 Trans-2-enoyl-CoA reductase catalytic region JC965_13885 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase JC965_13885 PF07055 Enoyl reductase FAD binding domain JC965_13890 PF00582 Universal stress protein family JC965_13895 PF00579 tRNA synthetases class I (W and Y) JC965_13900 PF03466 LysR substrate binding domain JC965_13900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_13920 PF00892 EamA-like transporter family JC965_13935 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JC965_13940 PF00625 Guanylate kinase JC965_13945 PF01192 RNA polymerase Rpb6 JC965_13950 PF04607 Region found in RelA / SpoT proteins JC965_13950 PF02824 TGS domain JC965_13950 PF13291 ACT domain JC965_13955 PF12105 SpoU, rRNA methylase, C-terminal JC965_13955 PF00588 SpoU rRNA Methylase family JC965_13960 PF00132 Bacterial transferase hexapeptide (six repeats) JC965_13965 PF12146 Serine aminopeptidase, S33 JC965_14005 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JC965_14010 PF00873 AcrB/AcrD/AcrF family JC965_14015 PF00512 His Kinase A (phospho-acceptor) domain JC965_14015 PF00497 Bacterial extracellular solute-binding proteins, family 3 JC965_14015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_14020 PF07992 Pyridine nucleotide-disulphide oxidoreductase JC965_14020 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JC965_14055 PF00561 alpha/beta hydrolase fold JC965_14060 PF00005 ABC transporter JC965_14060 PF00664 ABC transporter transmembrane region JC965_14065 PF06004 Bacterial protein of unknown function (DUF903) JC965_14070 PF00581 Rhodanese-like domain JC965_14075 PF04960 Glutaminase JC965_14080 PF04320 Protein with unknown function (DUF469) JC965_14085 PF02390 Putative methyltransferase JC965_14090 PF01483 Proprotein convertase P-domain JC965_14090 PF04389 Peptidase family M28 JC965_14095 PF00155 Aminotransferase class I and II JC965_14100 PF00563 EAL domain JC965_14100 PF12792 CSS motif domain associated with EAL JC965_14105 PF01370 NAD dependent epimerase/dehydratase family JC965_14105 PF08338 Domain of unknown function (DUF1731) JC965_14115 PF00005 ABC transporter JC965_14120 PF13472 GDSL-like Lipase/Acylhydrolase family JC965_14125 PF01584 CheW-like domain JC965_14125 PF00072 Response regulator receiver domain JC965_14130 PF00267 Gram-negative porin JC965_14135 PF00571 CBS domain JC965_14135 PF00478 IMP dehydrogenase / GMP reductase domain JC965_14140 PF00005 ABC transporter JC965_14140 PF12848 ABC transporter JC965_14150 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ JC965_14155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_14155 PF03466 LysR substrate binding domain JC965_14160 PF02525 Flavodoxin-like fold JC965_14195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JC965_14200 PF00528 Binding-protein-dependent transport system inner membrane component JC965_14205 PF00528 Binding-protein-dependent transport system inner membrane component JC965_14205 PF12911 N-terminal TM domain of oligopeptide transport permease C JC965_14210 PF00005 ABC transporter JC965_14210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JC965_14215 PF00005 ABC transporter JC965_14215 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JC965_14225 PF01869 BadF/BadG/BcrA/BcrD ATPase family JC965_14230 PF00728 Glycosyl hydrolase family 20, catalytic domain JC965_14230 PF02838 Glycosyl hydrolase family 20, domain 2 JC965_14235 PF08447 PAS fold JC965_14235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JC965_14250 PF01396 Topoisomerase DNA binding C4 zinc finger JC965_14250 PF01131 DNA topoisomerase JC965_14250 PF08272 Topoisomerase I zinc-ribbon-like JC965_14250 PF01751 Toprim domain JC965_14255 PF04996 Succinylarginine dihydrolase JC965_14260 PF08496 Peptidase family S49 N-terminal JC965_14260 PF01343 Peptidase family S49 JC965_14265 PF00106 short chain dehydrogenase JC965_14270 PF03466 LysR substrate binding domain JC965_14270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_14275 PF07690 Major Facilitator Superfamily JC965_14280 PF00155 Aminotransferase class I and II JC965_14290 PF03466 LysR substrate binding domain JC965_14290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_14295 PF00709 Adenylosuccinate synthetase JC965_14300 PF01161 Phosphatidylethanolamine-binding protein JC965_14310 PF01204 Trehalase JC965_14325 PF03606 C4-dicarboxylate anaerobic carrier JC965_14330 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JC965_14330 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JC965_14335 PF00696 Amino acid kinase family JC965_14350 PF00672 HAMP domain JC965_14350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JC965_14350 PF02743 Cache domain JC965_14355 PF02653 Branched-chain amino acid transport system / permease component JC965_14360 PF00005 ABC transporter JC965_14365 PF13407 Periplasmic binding protein domain JC965_14370 PF00703 Glycosyl hydrolases family 2 JC965_14370 PF02929 Beta galactosidase small chain JC965_14370 PF16353 Domain of unknown function(DUF4981) JC965_14370 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JC965_14370 PF02837 Glycosyl hydrolases family 2, sugar binding domain JC965_14375 PF00356 Bacterial regulatory proteins, lacI family JC965_14380 PF16363 GDP-mannose 4,6 dehydratase JC965_14385 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain JC965_14385 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain JC965_14390 PF10509 Galactokinase galactose-binding signature JC965_14390 PF08544 GHMP kinases C terminal JC965_14390 PF00288 GHMP kinases N terminal domain JC965_14395 PF01263 Aldose 1-epimerase JC965_14405 PF02673 Bacitracin resistance protein BacA JC965_14410 PF12973 ChrR Cupin-like domain JC965_14415 PF04542 Sigma-70 region 2 JC965_14415 PF04545 Sigma-70, region 4 JC965_14425 PF05746 DALR anticodon binding domain JC965_14425 PF00750 tRNA synthetases class I (R) JC965_14425 PF03485 Arginyl tRNA synthetase N terminal domain JC965_14435 PF00227 Proteasome subunit JC965_14440 PF07724 AAA domain (Cdc48 subfamily) JC965_14440 PF10431 C-terminal, D2-small domain, of ClpB protein JC965_14440 PF00004 ATPase family associated with various cellular activities (AAA) JC965_14470 PF00132 Bacterial transferase hexapeptide (six repeats) JC965_14475 PF13036 Peptidoglycan-synthase activator LpoB JC965_14480 PF00990 Diguanylate cyclase, GGDEF domain JC965_14485 PF06055 Exopolysaccharide synthesis, ExoD JC965_14500 PF08803 Putative mono-oxygenase ydhR JC965_14505 PF01638 HxlR-like helix-turn-helix JC965_14520 PF00593 TonB dependent receptor JC965_14520 PF07715 TonB-dependent Receptor Plug Domain JC965_14530 PF08241 Methyltransferase domain JC965_14540 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded JC965_14545 PF03692 Putative zinc- or iron-chelating domain JC965_14550 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JC965_14555 PF01722 BolA-like protein JC965_14565 PF05494 MlaC protein JC965_14570 PF02470 MlaD protein JC965_14575 PF02405 Permease MlaE JC965_14580 PF00005 ABC transporter JC965_14585 PF00571 CBS domain JC965_14585 PF01380 SIS domain JC965_14600 PF03968 OstA-like protein JC965_14605 PF00005 ABC transporter JC965_14605 PF12399 Branched-chain amino acid ATP-binding cassette transporter JC965_14610 PF04963 Sigma-54 factor, core binding domain JC965_14610 PF04552 Sigma-54, DNA binding domain JC965_14610 PF00309 Sigma-54 factor, Activator interacting domain (AID) JC965_14615 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JC965_14620 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JC965_14625 PF03668 P-loop ATPase protein family JC965_14630 PF00381 PTS HPr component phosphorylation site JC965_14640 PF01385 Probable transposase JC965_14640 PF07282 Putative transposase DNA-binding domain JC965_14640 PF12323 Helix-turn-helix domain JC965_14645 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JC965_14645 PF02770 Acyl-CoA dehydrogenase, middle domain JC965_14645 PF09317 Domain of unknown function (DUF1974) JC965_14645 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JC965_14650 PF13580 SIS domain JC965_14655 PF13230 Glutamine amidotransferases class-II JC965_14665 PF01933 Uncharacterised protein family UPF0052 JC965_14675 PF00512 His Kinase A (phospho-acceptor) domain JC965_14675 PF00072 Response regulator receiver domain JC965_14675 PF09456 RcsC Alpha-Beta-Loop (ABL) JC965_14675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_14690 PF00072 Response regulator receiver domain JC965_14690 PF00196 Bacterial regulatory proteins, luxR family JC965_14695 PF07730 Histidine kinase JC965_14695 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term JC965_14695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_14695 PF00672 HAMP domain JC965_14700 PF04055 Radical SAM superfamily JC965_14700 PF06463 Molybdenum Cofactor Synthesis C JC965_14705 PF00037 4Fe-4S binding domain JC965_14705 PF12800 4Fe-4S binding domain JC965_14705 PF13187 4Fe-4S dicluster domain JC965_14715 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JC965_14715 PF10518 TAT (twin-arginine translocation) pathway signal sequence JC965_14715 PF01568 Molydopterin dinucleotide binding domain JC965_14715 PF00384 Molybdopterin oxidoreductase JC965_14720 PF12838 4Fe-4S dicluster domain JC965_14720 PF12800 4Fe-4S binding domain JC965_14725 PF13237 4Fe-4S dicluster domain JC965_14725 PF12801 4Fe-4S binding domain JC965_14730 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) JC965_14735 PF03264 NapC/NirT cytochrome c family, N-terminal region JC965_14740 PF00994 Probable molybdopterin binding domain JC965_14745 PF01967 MoaC family JC965_14750 PF02597 ThiS family JC965_14755 PF02391 MoaE protein JC965_14765 PF00528 Binding-protein-dependent transport system inner membrane component JC965_14770 PF00005 ABC transporter JC965_14770 PF03459 TOBE domain JC965_14775 PF12697 Alpha/beta hydrolase family JC965_14780 PF00899 ThiF family JC965_14785 PF03453 MoeA N-terminal region (domain I and II) JC965_14785 PF03454 MoeA C-terminal region (domain IV) JC965_14785 PF00994 Probable molybdopterin binding domain JC965_14790 PF01227 GTP cyclohydrolase I JC965_14805 PF03401 Tripartite tricarboxylate transporter family receptor JC965_14815 PF01970 Tripartite tricarboxylate transporter TctA family JC965_14820 PF00072 Response regulator receiver domain JC965_14830 PF01047 MarR family JC965_14830 PF00480 ROK family JC965_14840 PF02810 SEC-C motif JC965_14845 PF01266 FAD dependent oxidoreductase JC965_14845 PF04324 BFD-like [2Fe-2S] binding domain JC965_14850 PF00890 FAD binding domain JC965_14855 PF13183 4Fe-4S dicluster domain JC965_14855 PF02754 Cysteine-rich domain JC965_14860 PF02335 Cytochrome c552 JC965_14865 PF13435 Cytochrome c554 and c-prime JC965_14865 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) JC965_14870 PF00037 4Fe-4S binding domain JC965_14870 PF13247 4Fe-4S dicluster domain JC965_14875 PF03916 Polysulphide reductase, NrfD JC965_14880 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JC965_14880 PF01578 Cytochrome C assembly protein JC965_14885 PF08534 Redoxin JC965_14890 PF03918 Cytochrome C biogenesis protein JC965_14895 PF00768 D-alanyl-D-alanine carboxypeptidase JC965_14905 PF04244 Deoxyribodipyrimidine photo-lyase-related protein JC965_14910 PF01266 FAD dependent oxidoreductase JC965_14915 PF01743 Poly A polymerase head domain JC965_14915 PF00571 CBS domain JC965_14935 PF03707 Bacterial signalling protein N terminal repeat JC965_14935 PF13188 PAS domain JC965_14935 PF00563 EAL domain JC965_14935 PF00990 Diguanylate cyclase, GGDEF domain JC965_14940 PF03806 AbgT putative transporter family JC965_14945 PF00881 Nitroreductase family JC965_14965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_14965 PF03466 LysR substrate binding domain JC965_14970 PF00925 GTP cyclohydrolase II JC965_14975 PF02224 Cytidylate kinase JC965_14980 PF00575 S1 RNA binding domain JC965_14985 PF00216 Bacterial DNA-binding protein JC965_14995 PF18073 Rubredoxin metal binding domain JC965_15000 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JC965_15015 PF06508 Queuosine biosynthesis protein QueC JC965_15020 PF04055 Radical SAM superfamily JC965_15025 PF12843 Putative quorum-sensing-regulated virulence factor JC965_15030 PF01923 Cobalamin adenosyltransferase JC965_15035 PF00816 H-NS histone family JC965_15040 PF03553 Na+/H+ antiporter family JC965_15045 PF00265 Thymidine kinase JC965_15055 PF10722 Putative bacterial sensory transduction regulator JC965_15070 PF02899 Phage integrase, N-terminal SAM-like domain JC965_15070 PF00589 Phage integrase family JC965_15080 PF00132 Bacterial transferase hexapeptide (six repeats) JC965_15085 PF01612 3'-5' exonuclease JC965_15085 PF00476 DNA polymerase family A JC965_15085 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JC965_15085 PF01367 5'-3' exonuclease, C-terminal SAM fold JC965_15095 PF06005 Cell division protein ZapB JC965_15105 PF06426 Serine acetyltransferase, N-terminal JC965_15105 PF00132 Bacterial transferase hexapeptide (six repeats) JC965_15110 PF16916 Dimerisation domain of Zinc Transporter JC965_15110 PF01545 Cation efflux family JC965_15115 PF00072 Response regulator receiver domain JC965_15115 PF00486 Transcriptional regulatory protein, C terminal JC965_15120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_15120 PF00512 His Kinase A (phospho-acceptor) domain JC965_15120 PF16527 Two-component sensor protein CpxA, periplasmic domain JC965_15120 PF00672 HAMP domain JC965_15125 PF00588 SpoU rRNA Methylase family JC965_15130 PF01554 MatE JC965_15135 PF02630 SCO1/SenC JC965_15145 PF00717 Peptidase S24-like JC965_15145 PF01726 LexA DNA binding domain JC965_15150 PF01553 Acyltransferase JC965_15155 PF01040 UbiA prenyltransferase family JC965_15160 PF04345 Chorismate lyase JC965_15165 PF03748 Flagellar basal body-associated protein FliL JC965_15180 PF00356 Bacterial regulatory proteins, lacI family JC965_15180 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JC965_15185 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JC965_15195 PF03611 PTS system sugar-specific permease component JC965_15205 PF00535 Glycosyl transferase family 2 JC965_15210 PF04932 O-Antigen ligase JC965_15225 PF01695 IstB-like ATP binding protein JC965_15250 PF00665 Integrase core domain JC965_15265 PF01553 Acyltransferase JC965_15270 PF01553 Acyltransferase JC965_15285 PF00857 Isochorismatase family JC965_15290 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family JC965_15290 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JC965_15300 PF00005 ABC transporter JC965_15305 PF00528 Binding-protein-dependent transport system inner membrane component JC965_15310 PF01323 DSBA-like thioredoxin domain JC965_15315 PF01636 Phosphotransferase enzyme family JC965_15320 PF13746 4Fe-4S dicluster domain JC965_15320 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase JC965_15320 PF12801 4Fe-4S binding domain JC965_15325 PF06288 Protein of unknown function (DUF1040) JC965_15330 PF00990 Diguanylate cyclase, GGDEF domain JC965_15330 PF00563 EAL domain JC965_15330 PF01590 GAF domain JC965_15330 PF00360 Phytochrome region JC965_15335 PF09278 MerR, DNA binding JC965_15335 PF00376 MerR family regulatory protein JC965_15340 PF00403 Heavy-metal-associated domain JC965_15345 PF00156 Phosphoribosyl transferase domain JC965_15350 PF03725 3' exoribonuclease family, domain 2 JC965_15350 PF01138 3' exoribonuclease family, domain 1 JC965_15355 PF08340 Domain of unknown function (DUF1732) JC965_15355 PF03755 YicC-like family, N-terminal region JC965_15370 PF01717 Cobalamin-independent synthase, Catalytic domain JC965_15370 PF08267 Cobalamin-independent synthase, N-terminal domain JC965_15375 PF03466 LysR substrate binding domain JC965_15375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_15385 PF07715 TonB-dependent Receptor Plug Domain JC965_15385 PF00593 TonB dependent receptor JC965_15395 PF17158 Membrane-associated sensor, integral membrane domain JC965_15395 PF00990 Diguanylate cyclase, GGDEF domain JC965_15400 PF12792 CSS motif domain associated with EAL JC965_15400 PF00563 EAL domain JC965_15405 PF12833 Helix-turn-helix domain JC965_15405 PF02311 AraC-like ligand binding domain JC965_15410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_15410 PF03466 LysR substrate binding domain JC965_15415 PF13460 NAD(P)H-binding JC965_15425 PF01053 Cys/Met metabolism PLP-dependent enzyme JC965_15430 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JC965_15430 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JC965_15470 PF02646 RmuC family JC965_15485 PF07282 Putative transposase DNA-binding domain JC965_15485 PF12323 Helix-turn-helix domain JC965_15485 PF01385 Probable transposase JC965_15490 PF00356 Bacterial regulatory proteins, lacI family JC965_15495 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) JC965_15500 PF00005 ABC transporter JC965_15505 PF00005 ABC transporter JC965_15505 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JC965_15510 PF12911 N-terminal TM domain of oligopeptide transport permease C JC965_15510 PF00528 Binding-protein-dependent transport system inner membrane component JC965_15515 PF00528 Binding-protein-dependent transport system inner membrane component JC965_15520 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JC965_15525 PF02954 Bacterial regulatory protein, Fis family JC965_15525 PF00158 Sigma-54 interaction domain JC965_15530 PF04012 PspA/IM30 family JC965_15535 PF06667 Phage shock protein B JC965_15545 PF04317 YcjX-like family, DUF463 JC965_15550 PF05128 Domain of unknown function (DUF697) JC965_15555 PF00351 Biopterin-dependent aromatic amino acid hydroxylase JC965_15560 PF01329 Pterin 4 alpha carbinolamine dehydratase JC965_15565 PF18024 Helix-turn-helix domain JC965_15565 PF00158 Sigma-54 interaction domain JC965_15575 PF17152 Periplasmic sensor domain JC965_15575 PF00990 Diguanylate cyclase, GGDEF domain JC965_15580 PF00691 OmpA family JC965_15590 PF02601 Exonuclease VII, large subunit JC965_15590 PF13742 OB-fold nucleic acid binding domain JC965_15635 PF02321 Outer membrane efflux protein JC965_15640 PF00873 AcrB/AcrD/AcrF family JC965_15645 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JC965_15645 PF00529 HlyD membrane-fusion protein of T1SS JC965_15650 PF00440 Bacterial regulatory proteins, tetR family JC965_15650 PF08361 MAATS-type transcriptional repressor, C-terminal region JC965_15675 PF00849 RNA pseudouridylate synthase JC965_15675 PF01479 S4 domain JC965_15680 PF04079 Segregation and condensation complex subunit ScpB JC965_15685 PF02616 Segregation and condensation protein ScpA JC965_15690 PF01300 Telomere recombination JC965_15695 PF02811 PHP domain JC965_15700 PF00425 chorismate binding enzyme JC965_15700 PF04715 Anthranilate synthase component I, N terminal region JC965_15705 PF00591 Glycosyl transferase family, a/b domain JC965_15705 PF02885 Glycosyl transferase family, helical bundle domain JC965_15705 PF00117 Glutamine amidotransferase class-I JC965_15710 PF02885 Glycosyl transferase family, helical bundle domain JC965_15710 PF00591 Glycosyl transferase family, a/b domain JC965_15715 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase JC965_15715 PF00218 Indole-3-glycerol phosphate synthase JC965_15720 PF00291 Pyridoxal-phosphate dependent enzyme JC965_15725 PF00290 Tryptophan synthase alpha chain JC965_15735 PF12323 Helix-turn-helix domain JC965_15735 PF07282 Putative transposase DNA-binding domain JC965_15735 PF01385 Probable transposase JC965_15745 PF09278 MerR, DNA binding JC965_15745 PF00376 MerR family regulatory protein JC965_15750 PF00682 HMGL-like JC965_15755 PF02785 Biotin carboxylase C-terminal domain JC965_15755 PF00364 Biotin-requiring enzyme JC965_15755 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JC965_15755 PF00289 Biotin carboxylase, N-terminal domain JC965_15760 PF00378 Enoyl-CoA hydratase/isomerase JC965_15765 PF01039 Carboxyl transferase domain JC965_15770 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JC965_15770 PF02770 Acyl-CoA dehydrogenase, middle domain JC965_15770 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JC965_15775 PF00171 Aldehyde dehydrogenase family JC965_15780 PF02770 Acyl-CoA dehydrogenase, middle domain JC965_15780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JC965_15780 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JC965_15785 PF00378 Enoyl-CoA hydratase/isomerase JC965_15790 PF00378 Enoyl-CoA hydratase/isomerase JC965_15795 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JC965_15795 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JC965_15805 PF13520 Amino acid permease JC965_15810 PF01925 Sulfite exporter TauE/SafE JC965_15830 PF01471 Putative peptidoglycan binding domain JC965_15830 PF13401 AAA domain JC965_15850 PF03743 Bacterial conjugation TrbI-like protein JC965_15860 PF03466 LysR substrate binding domain JC965_15860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_15865 PF01047 MarR family JC965_15895 PF01625 Peptide methionine sulfoxide reductase JC965_15905 PF03466 LysR substrate binding domain JC965_15905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_15910 PF01641 SelR domain JC965_15915 PF01625 Peptide methionine sulfoxide reductase JC965_15920 PF00043 Glutathione S-transferase, C-terminal domain JC965_15920 PF02798 Glutathione S-transferase, N-terminal domain JC965_15970 PF08240 Alcohol dehydrogenase GroES-like domain JC965_15970 PF00107 Zinc-binding dehydrogenase JC965_15975 PF01609 Transposase DDE domain JC965_15985 PF00072 Response regulator receiver domain JC965_15985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_15985 PF01627 Hpt domain JC965_15985 PF00512 His Kinase A (phospho-acceptor) domain JC965_15985 PF00497 Bacterial extracellular solute-binding proteins, family 3 JC965_15990 PF10725 Protein of unknown function (DUF2517) JC965_16010 PF00512 His Kinase A (phospho-acceptor) domain JC965_16010 PF00072 Response regulator receiver domain JC965_16010 PF09308 LuxQ, periplasmic JC965_16010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_16020 PF17969 L,D-transpeptidase C-terminal domain JC965_16020 PF03734 L,D-transpeptidase catalytic domain JC965_16020 PF01476 LysM domain JC965_16030 PF01575 MaoC like domain JC965_16035 PF05971 RNA methyltransferase JC965_16040 PF00877 NlpC/P60 family JC965_16045 PF01648 4'-phosphopantetheinyl transferase superfamily JC965_16050 PF00085 Thioredoxin JC965_16060 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JC965_16065 PF01842 ACT domain JC965_16065 PF00551 Formyl transferase JC965_16075 PF13091 PLD-like domain JC965_16075 PF13396 Phospholipase_D-nuclease N-terminal JC965_16090 PF01551 Peptidase family M23 JC965_16090 PF10145 Phage-related minor tail protein JC965_16090 PF01464 Transglycosylase SLT domain JC965_16095 PF00230 Major intrinsic protein JC965_16100 PF02075 Crossover junction endodeoxyribonuclease RuvC JC965_16110 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JC965_16130 PF13614 AAA domain JC965_16140 PF02092 Glycyl-tRNA synthetase beta subunit JC965_16140 PF05746 DALR anticodon binding domain JC965_16145 PF02091 Glycyl-tRNA synthetase alpha subunit JC965_16150 PF03352 Methyladenine glycosylase JC965_16155 PF00857 Isochorismatase family JC965_16165 PF00691 OmpA family JC965_16165 PF13488 Glycine zipper JC965_16185 PF01042 Endoribonuclease L-PSP JC965_16190 PF01206 Sulfurtransferase TusA JC965_16200 PF01547 Bacterial extracellular solute-binding protein JC965_16205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_16205 PF00672 HAMP domain JC965_16205 PF00512 His Kinase A (phospho-acceptor) domain JC965_16210 PF00486 Transcriptional regulatory protein, C terminal JC965_16210 PF00072 Response regulator receiver domain JC965_16215 PF00108 Thiolase, N-terminal domain JC965_16215 PF02803 Thiolase, C-terminal domain JC965_16220 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JC965_16220 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JC965_16220 PF00378 Enoyl-CoA hydratase/isomerase JC965_16225 PF13193 AMP-binding enzyme C-terminal domain JC965_16225 PF00501 AMP-binding enzyme JC965_16230 PF00557 Metallopeptidase family M24 JC965_16235 PF01205 Uncharacterized protein family UPF0029 JC965_16235 PF09186 Domain of unknown function (DUF1949) JC965_16240 PF02386 Cation transport protein JC965_16245 PF12724 Flavodoxin domain JC965_16255 PF12794 Mechanosensitive ion channel inner membrane domain 1 JC965_16255 PF12795 Mechanosensitive ion channel porin domain JC965_16255 PF00924 Mechanosensitive ion channel JC965_16260 PF02554 Carbon starvation protein CstA JC965_16265 PF04397 LytTr DNA-binding domain JC965_16265 PF00072 Response regulator receiver domain JC965_16270 PF06580 Histidine kinase JC965_16270 PF07694 5TMR of 5TMR-LYT JC965_16275 PF00072 Response regulator receiver domain JC965_16280 PF00171 Aldehyde dehydrogenase family JC965_16280 PF00465 Iron-containing alcohol dehydrogenase JC965_16285 PF01914 MarC family integral membrane protein JC965_16290 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JC965_16295 PF00528 Binding-protein-dependent transport system inner membrane component JC965_16300 PF00528 Binding-protein-dependent transport system inner membrane component JC965_16300 PF12911 N-terminal TM domain of oligopeptide transport permease C JC965_16305 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JC965_16305 PF00005 ABC transporter JC965_16310 PF00005 ABC transporter JC965_16310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JC965_16315 PF03741 Integral membrane protein TerC family JC965_16320 PF01168 Alanine racemase, N-terminal domain JC965_16320 PF00842 Alanine racemase, C-terminal domain JC965_16330 PF00375 Sodium:dicarboxylate symporter family JC965_16350 PF07690 Major Facilitator Superfamily JC965_16355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_16355 PF03466 LysR substrate binding domain JC965_16360 PF04151 Bacterial pre-peptidase C-terminal domain JC965_16360 PF02868 Thermolysin metallopeptidase, alpha-helical domain JC965_16360 PF03413 Peptidase propeptide and YPEB domain JC965_16360 PF01447 Thermolysin metallopeptidase, catalytic domain JC965_16360 PF07504 Fungalysin/Thermolysin Propeptide Motif JC965_16365 PF13302 Acetyltransferase (GNAT) domain JC965_16370 PF13302 Acetyltransferase (GNAT) domain JC965_16380 PF04074 YhcH/YjgK/YiaL JC965_16385 PF00871 Acetokinase family JC965_16390 PF00924 Mechanosensitive ion channel JC965_16395 PF17969 L,D-transpeptidase C-terminal domain JC965_16395 PF03734 L,D-transpeptidase catalytic domain JC965_16400 PF00474 Sodium:solute symporter family JC965_16410 PF13411 MerR HTH family regulatory protein JC965_16450 PF01979 Amidohydrolase family JC965_16460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JC965_16460 PF00672 HAMP domain JC965_16465 PF01230 HIT domain JC965_16500 PF13721 SecD export protein N-terminal TM region JC965_16500 PF02355 Protein export membrane protein JC965_16500 PF07549 SecD/SecF GG Motif JC965_16505 PF07549 SecD/SecF GG Motif JC965_16505 PF02355 Protein export membrane protein JC965_16510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JC965_16510 PF13426 PAS domain JC965_16510 PF08447 PAS fold JC965_16520 PF05661 Protein of unknown function (DUF808) JC965_16525 PF01432 Peptidase family M3 JC965_16525 PF08439 Oligopeptidase F JC965_16530 PF01432 Peptidase family M3 JC965_16530 PF08439 Oligopeptidase F JC965_16535 PF05728 Uncharacterised protein family (UPF0227) JC965_16540 PF07992 Pyridine nucleotide-disulphide oxidoreductase JC965_16555 PF06826 Predicted Permease Membrane Region JC965_16555 PF02080 TrkA-C domain JC965_16560 PF03006 Haemolysin-III related JC965_16565 PF00282 Pyridoxal-dependent decarboxylase conserved domain JC965_16570 PF04279 Intracellular septation protein A JC965_16575 PF03795 YCII-related domain JC965_16580 PF00459 Inositol monophosphatase family JC965_16590 PF00483 Nucleotidyl transferase JC965_16595 PF00854 POT family JC965_16600 PF00072 Response regulator receiver domain JC965_16630 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JC965_16640 PF01207 Dihydrouridine synthase (Dus) JC965_16645 PF02954 Bacterial regulatory protein, Fis family JC965_16650 PF01810 LysE type translocator JC965_16660 PF18389 TrmO C-terminal domain JC965_16660 PF01980 tRNA-methyltransferase O JC965_16665 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JC965_16665 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JC965_16675 PF01434 Peptidase family M41 JC965_16675 PF06480 FtsH Extracellular JC965_16675 PF17862 AAA+ lid domain JC965_16675 PF00004 ATPase family associated with various cellular activities (AAA) JC965_16680 PF00291 Pyridoxal-phosphate dependent enzyme JC965_16685 PF00381 PTS HPr component phosphorylation site JC965_16690 PF00391 PEP-utilising enzyme, mobile domain JC965_16690 PF02896 PEP-utilising enzyme, TIM barrel domain JC965_16690 PF05524 PEP-utilising enzyme, N-terminal JC965_16695 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JC965_16700 PF01292 Prokaryotic cytochrome b561 JC965_16710 PF00149 Calcineurin-like phosphoesterase JC965_16710 PF12320 Type 5 capsule protein repressor C-terminal domain JC965_16715 PF00583 Acetyltransferase (GNAT) family JC965_16720 PF04381 Putative exonuclease, RdgC JC965_16735 PF02254 TrkA-N domain JC965_16735 PF00999 Sodium/hydrogen exchanger family JC965_16760 PF01274 Malate synthase JC965_16765 PF00463 Isocitrate lyase family JC965_16770 PF00308 Bacterial dnaA protein JC965_16785 PF00586 AIR synthase related protein, N-terminal domain JC965_16785 PF02769 AIR synthase related protein, C-terminal domain JC965_16790 PF00551 Formyl transferase JC965_16795 PF01784 NIF3 (NGG1p interacting factor 3) JC965_16800 PF00072 Response regulator receiver domain JC965_16800 PF00158 Sigma-54 interaction domain JC965_16800 PF02954 Bacterial regulatory protein, Fis family JC965_16805 PF13188 PAS domain JC965_16805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_16805 PF00512 His Kinase A (phospho-acceptor) domain JC965_16810 PF06490 Flagellar regulatory protein FleQ JC965_16810 PF00158 Sigma-54 interaction domain JC965_16810 PF02954 Bacterial regulatory protein, Fis family JC965_16820 PF01842 ACT domain JC965_16825 PF13089 Polyphosphate kinase N-terminal domain JC965_16825 PF13090 Polyphosphate kinase C-terminal domain 2 JC965_16825 PF02503 Polyphosphate kinase middle domain JC965_16825 PF17941 Polyphosphate kinase C-terminal domain 1 JC965_16830 PF02541 Ppx/GppA phosphatase family JC965_16835 PF03448 MgtE intracellular N domain JC965_16835 PF01769 Divalent cation transporter JC965_16835 PF00571 CBS domain JC965_16840 PF12323 Helix-turn-helix domain JC965_16840 PF07282 Putative transposase DNA-binding domain JC965_16840 PF01385 Probable transposase JC965_16845 PF01797 Transposase IS200 like JC965_16860 PF00005 ABC transporter JC965_16865 PF01032 FecCD transport family JC965_16870 PF01032 FecCD transport family JC965_16875 PF07715 TonB-dependent Receptor Plug Domain JC965_16875 PF00593 TonB dependent receptor JC965_16890 PF11143 Protein of unknown function (DUF2919) JC965_16895 PF01544 CorA-like Mg2+ transporter protein JC965_16905 PF01012 Electron transfer flavoprotein domain JC965_16910 PF01012 Electron transfer flavoprotein domain JC965_16910 PF00766 Electron transfer flavoprotein FAD-binding domain JC965_16915 PF00266 Aminotransferase class-V JC965_16920 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JC965_16925 PF00793 DAHP synthetase I family JC965_16930 PF03741 Integral membrane protein TerC family JC965_16940 PF08891 YfcL protein JC965_16945 PF00501 AMP-binding enzyme JC965_16955 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF JC965_16955 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF JC965_16955 PF01189 16S rRNA methyltransferase RsmB/F JC965_16965 PF00589 Phage integrase family JC965_16970 PF01026 TatD related DNase JC965_16975 PF09115 DNA polymerase III, delta subunit, C terminal JC965_16980 PF02223 Thymidylate kinase JC965_16985 PF02618 YceG-like family JC965_16990 PF01063 Amino-transferase class IV JC965_16995 PF00109 Beta-ketoacyl synthase, N-terminal domain JC965_16995 PF02801 Beta-ketoacyl synthase, C-terminal domain JC965_17000 PF00550 Phosphopantetheine attachment site JC965_17010 PF00698 Acyl transferase domain JC965_17015 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JC965_17015 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JC965_17020 PF02504 Fatty acid synthesis protein JC965_17025 PF01783 Ribosomal L32p protein family JC965_17030 PF02620 Large ribosomal RNA subunit accumulation protein YceD JC965_17040 PF02545 Maf-like protein JC965_17045 PF00849 RNA pseudouridylate synthase JC965_17045 PF01479 S4 domain JC965_17050 PF10150 Ribonuclease E/G family JC965_17050 PF12111 Polyribonucleotide phosphorylase C terminal JC965_17050 PF00575 S1 RNA binding domain JC965_17080 PF00158 Sigma-54 interaction domain JC965_17080 PF13188 PAS domain JC965_17080 PF02954 Bacterial regulatory protein, Fis family JC965_17085 PF02653 Branched-chain amino acid transport system / permease component JC965_17095 PF00005 ABC transporter JC965_17095 PF12399 Branched-chain amino acid ATP-binding cassette transporter JC965_17100 PF00005 ABC transporter JC965_17105 PF01774 UreD urease accessory protein JC965_17110 PF00547 Urease, gamma subunit JC965_17115 PF00699 Urease beta subunit JC965_17120 PF00449 Urease alpha-subunit, N-terminal domain JC965_17120 PF01979 Amidohydrolase family JC965_17125 PF02814 UreE urease accessory protein, N-terminal domain JC965_17125 PF05194 UreE urease accessory protein, C-terminal domain JC965_17135 PF01730 UreF JC965_17140 PF02492 CobW/HypB/UreG, nucleotide-binding domain JC965_17185 PF01695 IstB-like ATP binding protein JC965_17195 PF07508 Recombinase JC965_17195 PF00239 Resolvase, N terminal domain JC965_17195 PF13408 Recombinase zinc beta ribbon domain JC965_17200 PF03960 ArsC family JC965_17205 PF01546 Peptidase family M20/M25/M40 JC965_17205 PF07687 Peptidase dimerisation domain JC965_17210 PF02557 D-alanyl-D-alanine carboxypeptidase JC965_17220 PF02080 TrkA-C domain JC965_17220 PF00999 Sodium/hydrogen exchanger family JC965_17220 PF03471 Transporter associated domain JC965_17230 PF01810 LysE type translocator JC965_17235 PF00672 HAMP domain JC965_17235 PF12729 Four helix bundle sensory module for signal transduction JC965_17235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JC965_17240 PF07509 Protein of unknown function (DUF1523) JC965_17255 PF01156 Inosine-uridine preferring nucleoside hydrolase JC965_17260 PF00849 RNA pseudouridylate synthase JC965_17265 PF01048 Phosphorylase superfamily JC965_17270 PF00465 Iron-containing alcohol dehydrogenase JC965_17275 PF04355 SmpA / OmlA family JC965_17280 PF13460 NAD(P)H-binding JC965_17285 PF03658 RnfH family Ubiquitin JC965_17290 PF03364 Polyketide cyclase / dehydrase and lipid transport JC965_17295 PF01668 SmpB protein JC965_17315 PF05598 Transposase domain (DUF772) JC965_17315 PF01609 Transposase DDE domain JC965_17335 PF12704 MacB-like periplasmic core domain JC965_17335 PF02687 FtsX-like permease family JC965_17340 PF00005 ABC transporter JC965_17350 PF03600 Citrate transporter JC965_17360 PF07690 Major Facilitator Superfamily JC965_17380 PF01593 Flavin containing amine oxidoreductase JC965_17385 PF03239 Iron permease FTR1 family JC965_17420 PF01384 Phosphate transporter family JC965_17425 PF00692 dUTPase JC965_17430 PF00485 Phosphoribulokinase / Uridine kinase family JC965_17435 PF10609 NUBPL iron-transfer P-loop NTPase JC965_17440 PF01588 Putative tRNA binding domain JC965_17440 PF09334 tRNA synthetases class I (M) JC965_17440 PF08264 Anticodon-binding domain of tRNA JC965_17450 PF00708 Acylphosphatase JC965_17455 PF00672 HAMP domain JC965_17455 PF12729 Four helix bundle sensory module for signal transduction JC965_17455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JC965_17460 PF17785 PUA-like domain JC965_17460 PF10672 S-adenosylmethionine-dependent methyltransferase JC965_17475 PF00586 AIR synthase related protein, N-terminal domain JC965_17475 PF02769 AIR synthase related protein, C-terminal domain JC965_17485 PF00753 Metallo-beta-lactamase superfamily JC965_17490 PF00072 Response regulator receiver domain JC965_17515 PF01197 Ribosomal protein L31 JC965_17520 PF00271 Helicase conserved C-terminal domain JC965_17520 PF17764 3′ DNA-binding domain (3′BD) JC965_17520 PF18074 Primosomal protein N C-terminal domain JC965_17520 PF00270 DEAD/DEAH box helicase JC965_17520 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JC965_17525 PF00440 Bacterial regulatory proteins, tetR family JC965_17535 PF01389 OmpA-like transmembrane domain JC965_17535 PF00691 OmpA family JC965_17540 PF00291 Pyridoxal-phosphate dependent enzyme JC965_17540 PF00585 C-terminal regulatory domain of Threonine dehydratase JC965_17545 PF00920 Dehydratase family JC965_17550 PF01063 Amino-transferase class IV JC965_17560 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JC965_17560 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JC965_17560 PF00205 Thiamine pyrophosphate enzyme, central domain JC965_17625 PF00291 Pyridoxal-phosphate dependent enzyme JC965_17625 PF14821 Threonine synthase N terminus JC965_17630 PF08544 GHMP kinases C terminal JC965_17630 PF00288 GHMP kinases N terminal domain JC965_17635 PF13840 ACT domain JC965_17635 PF01842 ACT domain JC965_17635 PF00696 Amino acid kinase family JC965_17635 PF03447 Homoserine dehydrogenase, NAD binding domain JC965_17635 PF00742 Homoserine dehydrogenase JC965_17640 PF00588 SpoU rRNA Methylase family JC965_17645 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) JC965_17660 PF03737 Aldolase/RraA JC965_17670 PF00072 Response regulator receiver domain JC965_17670 PF00486 Transcriptional regulatory protein, C terminal JC965_17685 PF00664 ABC transporter transmembrane region JC965_17685 PF00005 ABC transporter JC965_17690 PF00005 ABC transporter JC965_17690 PF00664 ABC transporter transmembrane region JC965_17725 PF02899 Phage integrase, N-terminal SAM-like domain JC965_17725 PF00589 Phage integrase family JC965_17730 PF01695 IstB-like ATP binding protein JC965_17735 PF00665 Integrase core domain JC965_17750 PF01380 SIS domain JC965_17750 PF00571 CBS domain JC965_17755 PF08220 DeoR-like helix-turn-helix domain JC965_17755 PF00455 DeoR C terminal sensor domain JC965_17765 PF00106 short chain dehydrogenase JC965_17770 PF03829 PTS system glucitol/sorbitol-specific IIA component JC965_17775 PF03612 Sorbitol phosphotransferase enzyme II N-terminus JC965_17775 PF07663 Sorbitol phosphotransferase enzyme II C-terminus JC965_17780 PF03608 PTS system enzyme II sorbitol-specific factor JC965_17785 PF00107 Zinc-binding dehydrogenase JC965_17785 PF08240 Alcohol dehydrogenase GroES-like domain JC965_17820 PF01695 IstB-like ATP binding protein JC965_17860 PF07883 Cupin domain JC965_17860 PF01381 Helix-turn-helix JC965_17865 PF03594 Benzoate membrane transport protein JC965_17875 PF02219 Methylenetetrahydrofolate reductase JC965_17890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JC965_17890 PF12729 Four helix bundle sensory module for signal transduction JC965_17890 PF00672 HAMP domain JC965_17895 PF03922 OmpW family JC965_17900 PF17755 UvrA DNA-binding domain JC965_17900 PF17760 UvrA interaction domain JC965_17900 PF00005 ABC transporter JC965_17905 PF00196 Bacterial regulatory proteins, luxR family JC965_17910 PF00436 Single-strand binding protein family JC965_17915 PF00589 Phage integrase family JC965_17915 PF02899 Phage integrase, N-terminal SAM-like domain JC965_17945 PF01418 Helix-turn-helix domain, rpiR family JC965_17945 PF01380 SIS domain JC965_17950 PF00367 phosphotransferase system, EIIB JC965_17950 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JC965_17950 PF02378 Phosphotransferase system, EIIC JC965_17955 PF00232 Glycosyl hydrolase family 1 JC965_17970 PF00141 Peroxidase JC965_17980 PF07804 HipA-like C-terminal domain JC965_17980 PF13657 HipA N-terminal domain JC965_18030 PF05872 Bacterial protein of unknown function (DUF853) JC965_18035 PF00155 Aminotransferase class I and II JC965_18045 PF13609 Gram-negative porin JC965_18050 PF06733 DEAD_2 JC965_18050 PF13307 Helicase C-terminal domain JC965_18060 PF00850 Histone deacetylase domain JC965_18065 PF07690 Major Facilitator Superfamily JC965_18070 PF01926 50S ribosome-binding GTPase JC965_18075 PF00245 Alkaline phosphatase JC965_18080 PF00245 Alkaline phosphatase JC965_18095 PF14760 Rnk N-terminus JC965_18095 PF01272 Transcription elongation factor, GreA/GreB, C-term JC965_18120 PF05275 Copper resistance protein B precursor (CopB) JC965_18125 PF00394 Multicopper oxidase JC965_18125 PF07731 Multicopper oxidase JC965_18125 PF07732 Multicopper oxidase JC965_18155 PF00313 'Cold-shock' DNA-binding domain JC965_18160 PF00672 HAMP domain JC965_18160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_18160 PF00512 His Kinase A (phospho-acceptor) domain JC965_18165 PF00072 Response regulator receiver domain JC965_18165 PF00486 Transcriptional regulatory protein, C terminal JC965_18175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JC965_18175 PF00672 HAMP domain JC965_18190 PF00543 Nitrogen regulatory protein P-II JC965_18195 PF00909 Ammonium Transporter Family JC965_18210 PF00149 Calcineurin-like phosphoesterase JC965_18210 PF02872 5'-nucleotidase, C-terminal domain JC965_18220 PF00772 DnaB-like helicase N terminal domain JC965_18220 PF03796 DnaB-like helicase C terminal domain JC965_18225 PF01168 Alanine racemase, N-terminal domain JC965_18225 PF00842 Alanine racemase, C-terminal domain JC965_18230 PF00171 Aldehyde dehydrogenase family JC965_18230 PF18327 Proline utilization A proline dehydrogenase N-terminal domain JC965_18230 PF01619 Proline dehydrogenase JC965_18230 PF14850 DNA-binding domain of Proline dehydrogenase JC965_18240 PF00206 Lyase JC965_18240 PF10415 Fumarase C C-terminus JC965_18245 PF03575 Peptidase family S51 JC965_18250 PF13722 5TM C-terminal transporter carbon starvation CstA JC965_18250 PF02554 Carbon starvation protein CstA JC965_18255 PF00072 Response regulator receiver domain JC965_18255 PF04397 LytTr DNA-binding domain JC965_18260 PF06580 Histidine kinase JC965_18260 PF07694 5TMR of 5TMR-LYT JC965_18275 PF03167 Uracil DNA glycosylase superfamily JC965_18290 PF00923 Transaldolase/Fructose-6-phosphate aldolase JC965_18295 PF01235 Sodium:alanine symporter family JC965_18300 PF00144 Beta-lactamase JC965_18310 PF03652 Holliday junction resolvase JC965_18315 PF02622 Uncharacterized ACR, COG1678 JC965_18320 PF02951 Prokaryotic glutathione synthetase, N-terminal domain JC965_18320 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain JC965_18325 PF04452 RNA methyltransferase JC965_18330 PF04231 Endonuclease I JC965_18335 PF10263 SprT-like family JC965_18335 PF17283 SprT-like zinc ribbon domain JC965_18340 PF02772 S-adenosylmethionine synthetase, central domain JC965_18340 PF02773 S-adenosylmethionine synthetase, C-terminal domain JC965_18340 PF00438 S-adenosylmethionine synthetase, N-terminal domain JC965_18345 PF00456 Transketolase, thiamine diphosphate binding domain JC965_18345 PF02780 Transketolase, C-terminal domain JC965_18345 PF02779 Transketolase, pyrimidine binding domain JC965_18370 PF01261 Xylose isomerase-like TIM barrel JC965_18375 PF00933 Glycosyl hydrolase family 3 N terminal domain JC965_18385 PF03466 LysR substrate binding domain JC965_18385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_18395 PF00232 Glycosyl hydrolase family 1 JC965_18400 PF03466 LysR substrate binding domain JC965_18400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_18405 PF00990 Diguanylate cyclase, GGDEF domain JC965_18405 PF00072 Response regulator receiver domain JC965_18410 PF00384 Molybdopterin oxidoreductase JC965_18415 PF02634 FdhD/NarQ family JC965_18430 PF03466 LysR substrate binding domain JC965_18430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_18470 PF12323 Helix-turn-helix domain JC965_18480 PF11742 Protein of unknown function (DUF3302) JC965_18485 PF00529 HlyD membrane-fusion protein of T1SS JC965_18485 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JC965_18490 PF00271 Helicase conserved C-terminal domain JC965_18490 PF04851 Type III restriction enzyme, res subunit JC965_18495 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family JC965_18500 PF00462 Glutaredoxin JC965_18510 PF00155 Aminotransferase class I and II JC965_18515 PF03606 C4-dicarboxylate anaerobic carrier JC965_18520 PF07055 Enoyl reductase FAD binding domain JC965_18520 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase JC965_18520 PF12241 Trans-2-enoyl-CoA reductase catalytic region JC965_18585 PF00324 Amino acid permease JC965_18595 PF03618 Kinase/pyrophosphorylase JC965_18600 PF00391 PEP-utilising enzyme, mobile domain JC965_18600 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JC965_18600 PF02896 PEP-utilising enzyme, TIM barrel domain JC965_18605 PF00005 ABC transporter JC965_18650 PF07196 Flagellin hook IN motif JC965_18650 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JC965_18655 PF10135 Rod binding protein JC965_18655 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JC965_18660 PF02119 Flagellar P-ring protein JC965_18665 PF02107 Flagellar L-ring protein JC965_18670 PF00460 Flagella basal body rod protein JC965_18670 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JC965_18675 PF00460 Flagella basal body rod protein JC965_18675 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JC965_18680 PF00460 Flagella basal body rod protein JC965_18680 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JC965_18680 PF07559 Flagellar basal body protein FlaE JC965_18690 PF00460 Flagella basal body rod protein JC965_18690 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JC965_18695 PF00460 Flagella basal body rod protein JC965_18700 PF01739 CheR methyltransferase, SAM binding domain JC965_18700 PF03705 CheR methyltransferase, all-alpha domain JC965_18705 PF00072 Response regulator receiver domain JC965_18705 PF01584 CheW-like domain JC965_18710 PF13144 Chaperone for flagella basal body P-ring formation JC965_18725 PF12850 Calcineurin-like phosphoesterase superfamily domain JC965_18730 PF07282 Putative transposase DNA-binding domain JC965_18730 PF01385 Probable transposase JC965_18730 PF12323 Helix-turn-helix domain JC965_18765 PF01266 FAD dependent oxidoreductase JC965_18770 PF07883 Cupin domain JC965_18770 PF01381 Helix-turn-helix JC965_18775 PF00171 Aldehyde dehydrogenase family JC965_18780 PF00202 Aminotransferase class-III JC965_18790 PF00324 Amino acid permease JC965_18795 PF13520 Amino acid permease JC965_18805 PF02690 Na+/Pi-cotransporter JC965_18815 PF02233 NAD(P) transhydrogenase beta subunit JC965_18820 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JC965_18820 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JC965_18820 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch JC965_18825 PF00465 Iron-containing alcohol dehydrogenase JC965_18830 PF06719 AraC-type transcriptional regulator N-terminus JC965_18830 PF12833 Helix-turn-helix domain JC965_18835 PF08212 Lipocalin-like domain JC965_18845 PF00672 HAMP domain JC965_18845 PF02743 Cache domain JC965_18845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JC965_18870 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JC965_18870 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JC965_18875 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain JC965_18875 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain JC965_18880 PF02863 Arginine repressor, C-terminal domain JC965_18880 PF01316 Arginine repressor, DNA binding domain JC965_18905 PF01370 NAD dependent epimerase/dehydratase family JC965_18910 PF00440 Bacterial regulatory proteins, tetR family JC965_18910 PF08360 QacR-like protein, C-terminal region JC965_18915 PF00155 Aminotransferase class I and II JC965_18920 PF00107 Zinc-binding dehydrogenase JC965_18920 PF08240 Alcohol dehydrogenase GroES-like domain JC965_18925 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JC965_18930 PF00990 Diguanylate cyclase, GGDEF domain JC965_18930 PF00563 EAL domain JC965_18930 PF03707 Bacterial signalling protein N terminal repeat JC965_18935 PF00580 UvrD/REP helicase N-terminal domain JC965_18935 PF13361 UvrD-like helicase C-terminal domain JC965_18940 PF00266 Aminotransferase class-V JC965_18945 PF02657 Fe-S metabolism associated domain JC965_18950 PF00899 ThiF family JC965_18970 PF00440 Bacterial regulatory proteins, tetR family JC965_18975 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JC965_18975 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JC965_18975 PF09317 Domain of unknown function (DUF1974) JC965_18975 PF02770 Acyl-CoA dehydrogenase, middle domain JC965_18980 PF00873 AcrB/AcrD/AcrF family JC965_18990 PF02887 Pyruvate kinase, alpha/beta domain JC965_18990 PF00224 Pyruvate kinase, barrel domain JC965_18995 PF01380 SIS domain JC965_18995 PF01418 Helix-turn-helix domain, rpiR family JC965_19000 PF02685 Glucokinase JC965_19005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_19010 PF00072 Response regulator receiver domain JC965_19010 PF00486 Transcriptional regulatory protein, C terminal JC965_19020 PF12002 MgsA AAA+ ATPase C terminal JC965_19020 PF16193 AAA C-terminal domain JC965_19020 PF00004 ATPase family associated with various cellular activities (AAA) JC965_19025 PF03548 Outer membrane lipoprotein carrier protein LolA JC965_19030 PF13491 4TM region of DNA translocase FtsK/SpoIIIE JC965_19030 PF09397 Ftsk gamma domain JC965_19030 PF17854 FtsK alpha domain JC965_19030 PF01580 FtsK/SpoIIIE family JC965_19035 PF01037 Lrp/AsnC ligand binding domain JC965_19040 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JC965_19040 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JC965_19045 PF07992 Pyridine nucleotide-disulphide oxidoreductase JC965_19050 PF00990 Diguanylate cyclase, GGDEF domain JC965_19050 PF05230 MASE2 domain JC965_19055 PF05433 Glycine zipper 2TM domain JC965_19060 PF03588 Leucyl/phenylalanyl-tRNA protein transferase JC965_19065 PF04377 Arginine-tRNA-protein transferase, C terminus JC965_19065 PF04376 Arginine-tRNA-protein transferase, N terminus JC965_19070 PF01176 Translation initiation factor 1A / IF-1 JC965_19075 PF07724 AAA domain (Cdc48 subfamily) JC965_19075 PF02861 Clp amino terminal domain, pathogenicity island component JC965_19075 PF00004 ATPase family associated with various cellular activities (AAA) JC965_19075 PF10431 C-terminal, D2-small domain, of ClpB protein JC965_19075 PF17871 AAA lid domain JC965_19080 PF02617 ATP-dependent Clp protease adaptor protein ClpS JC965_19085 PF00313 'Cold-shock' DNA-binding domain JC965_19090 PF13358 DDE superfamily endonuclease JC965_19105 PF03942 DTW domain JC965_19110 PF01820 D-ala D-ala ligase N-terminus JC965_19110 PF07478 D-ala D-ala ligase C-terminus JC965_19120 PF00255 Glutathione peroxidase JC965_19125 PF00271 Helicase conserved C-terminal domain JC965_19125 PF00270 DEAD/DEAH box helicase JC965_19130 PF00583 Acetyltransferase (GNAT) family JC965_19155 PF13673 Acetyltransferase (GNAT) domain JC965_19160 PF03992 Antibiotic biosynthesis monooxygenase JC965_19165 PF08543 Phosphomethylpyrimidine kinase JC965_19190 PF07282 Putative transposase DNA-binding domain JC965_19190 PF01385 Probable transposase JC965_19190 PF12323 Helix-turn-helix domain JC965_19215 PF00528 Binding-protein-dependent transport system inner membrane component JC965_19235 PF00561 alpha/beta hydrolase fold JC965_19240 PF03976 Polyphosphate kinase 2 (PPK2) JC965_19245 PF00005 ABC transporter JC965_19245 PF08402 TOBE domain JC965_19250 PF00528 Binding-protein-dependent transport system inner membrane component JC965_19255 PF14785 Maltose transport system permease protein MalF P2 domain JC965_19255 PF00528 Binding-protein-dependent transport system inner membrane component JC965_19260 PF01547 Bacterial extracellular solute-binding protein JC965_19265 PF04245 37-kD nucleoid-associated bacterial protein JC965_19270 PF07208 Protein of unknown function (DUF1414) JC965_19275 PF00884 Sulfatase JC965_19275 PF11893 Domain of unknown function (DUF3413) JC965_19280 PF00593 TonB dependent receptor JC965_19280 PF07715 TonB-dependent Receptor Plug Domain JC965_19290 PF07282 Putative transposase DNA-binding domain JC965_19290 PF01385 Probable transposase JC965_19290 PF12323 Helix-turn-helix domain JC965_19315 PF00528 Binding-protein-dependent transport system inner membrane component JC965_19330 PF01609 Transposase DDE domain JC965_19330 PF13006 Insertion element 4 transposase N-terminal JC965_19335 PF04998 RNA polymerase Rpb1, domain 5 JC965_19335 PF04983 RNA polymerase Rpb1, domain 3 JC965_19335 PF00623 RNA polymerase Rpb1, domain 2 JC965_19335 PF04997 RNA polymerase Rpb1, domain 1 JC965_19335 PF05000 RNA polymerase Rpb1, domain 4 JC965_19340 PF04563 RNA polymerase beta subunit JC965_19340 PF04561 RNA polymerase Rpb2, domain 2 JC965_19340 PF04560 RNA polymerase Rpb2, domain 7 JC965_19340 PF10385 RNA polymerase beta subunit external 1 domain JC965_19340 PF04565 RNA polymerase Rpb2, domain 3 JC965_19340 PF00562 RNA polymerase Rpb2, domain 6 JC965_19345 PF16320 Ribosomal protein L7/L12 dimerisation domain JC965_19345 PF00542 Ribosomal protein L7/L12 C-terminal domain JC965_19350 PF00466 Ribosomal protein L10 JC965_19355 PF00687 Ribosomal protein L1p/L10e family JC965_19360 PF00298 Ribosomal protein L11, RNA binding domain JC965_19360 PF03946 Ribosomal protein L11, N-terminal domain JC965_19365 PF00467 KOW motif JC965_19365 PF02357 Transcription termination factor nusG JC965_19370 PF00584 SecE/Sec61-gamma subunits of protein translocation complex JC965_19385 PF00849 RNA pseudouridylate synthase JC965_19390 PF00293 NUDIX domain JC965_19400 PF04356 Protein of unknown function (DUF489) JC965_19405 PF00206 Lyase JC965_19405 PF08328 Adenylosuccinate lyase C-terminal JC965_19410 PF08007 Cupin superfamily protein JC965_19415 PF00224 Pyruvate kinase, barrel domain JC965_19415 PF02887 Pyruvate kinase, alpha/beta domain JC965_19420 PF12795 Mechanosensitive ion channel porin domain JC965_19420 PF00924 Mechanosensitive ion channel JC965_19420 PF12794 Mechanosensitive ion channel inner membrane domain 1 JC965_19425 PF01810 LysE type translocator JC965_19430 PF10282 Lactonase, 7-bladed beta-propeller JC965_19450 PF02321 Outer membrane efflux protein JC965_19455 PF00529 HlyD membrane-fusion protein of T1SS JC965_19455 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JC965_19470 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JC965_19470 PF07992 Pyridine nucleotide-disulphide oxidoreductase JC965_19475 PF00563 EAL domain JC965_19475 PF00990 Diguanylate cyclase, GGDEF domain JC965_19475 PF03707 Bacterial signalling protein N terminal repeat JC965_19480 PF04055 Radical SAM superfamily JC965_19505 PF01654 Cytochrome bd terminal oxidase subunit I JC965_19510 PF02322 Cytochrome bd terminal oxidase subunit II JC965_19520 PF07690 Major Facilitator Superfamily JC965_19525 PF00248 Aldo/keto reductase family JC965_19545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_19545 PF03466 LysR substrate binding domain JC965_19550 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JC965_19550 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JC965_19555 PF00230 Major intrinsic protein JC965_19570 PF03772 Competence protein JC965_19570 PF00753 Metallo-beta-lactamase superfamily JC965_19575 PF00664 ABC transporter transmembrane region JC965_19575 PF00005 ABC transporter JC965_19580 PF02606 Tetraacyldisaccharide-1-P 4'-kinase JC965_19585 PF03966 Trm112p-like protein JC965_19590 PF02348 Cytidylyltransferase JC965_19595 PF00196 Bacterial regulatory proteins, luxR family JC965_19595 PF00072 Response regulator receiver domain JC965_19600 PF01541 GIY-YIG catalytic domain JC965_19600 PF08459 UvrC Helix-hairpin-helix N-terminal JC965_19600 PF02151 UvrB/uvrC motif JC965_19605 PF01066 CDP-alcohol phosphatidyltransferase JC965_19625 PF00589 Phage integrase family JC965_19635 PF01177 Asp/Glu/Hydantoin racemase JC965_19640 PF07715 TonB-dependent Receptor Plug Domain JC965_19640 PF00593 TonB dependent receptor JC965_19645 PF03466 LysR substrate binding domain JC965_19645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_19660 PF00731 AIR carboxylase JC965_19665 PF02222 ATP-grasp domain JC965_19665 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain JC965_19670 PF07690 Major Facilitator Superfamily JC965_19675 PF04397 LytTr DNA-binding domain JC965_19675 PF00072 Response regulator receiver domain JC965_19680 PF06580 Histidine kinase JC965_19680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_19680 PF07694 5TMR of 5TMR-LYT JC965_19700 PF01242 6-pyruvoyl tetrahydropterin synthase JC965_19725 PF06508 Queuosine biosynthesis protein QueC JC965_19730 PF04055 Radical SAM superfamily JC965_19740 PF04002 RadC-like JAB domain JC965_19805 PF12833 Helix-turn-helix domain JC965_19805 PF02311 AraC-like ligand binding domain JC965_19810 PF00175 Oxidoreductase NAD-binding domain JC965_19810 PF00111 2Fe-2S iron-sulfur cluster binding domain JC965_19810 PF00970 Oxidoreductase FAD-binding domain JC965_19815 PF00270 DEAD/DEAH box helicase JC965_19815 PF00271 Helicase conserved C-terminal domain JC965_19820 PF00990 Diguanylate cyclase, GGDEF domain JC965_19825 PF05643 Putative bacterial lipoprotein (DUF799) JC965_19835 PF03783 Curli production assembly/transport component CsgG JC965_19855 PF07152 YaeQ protein JC965_19865 PF07690 Major Facilitator Superfamily JC965_19870 PF00005 ABC transporter JC965_19875 PF01032 FecCD transport family JC965_19890 PF05433 Glycine zipper 2TM domain JC965_19905 PF12323 Helix-turn-helix domain JC965_19960 PF13520 Amino acid permease JC965_19965 PF02574 Homocysteine S-methyltransferase JC965_19965 PF00809 Pterin binding enzyme JC965_19965 PF02965 Vitamin B12 dependent methionine synthase, activation domain JC965_19965 PF02607 B12 binding domain JC965_19965 PF02310 B12 binding domain JC965_19975 PF01595 Cyclin M transmembrane N-terminal domain JC965_19975 PF00571 CBS domain JC965_19975 PF03471 Transporter associated domain JC965_19980 PF01895 PhoU domain JC965_19985 PF00005 ABC transporter JC965_19990 PF00528 Binding-protein-dependent transport system inner membrane component JC965_19995 PF00528 Binding-protein-dependent transport system inner membrane component JC965_20000 PF14437 MafB19-like deaminase JC965_20020 PF07690 Major Facilitator Superfamily JC965_20025 PF00455 DeoR C terminal sensor domain JC965_20025 PF08220 DeoR-like helix-turn-helix domain JC965_20030 PF16901 C-terminal domain of alpha-glycerophosphate oxidase JC965_20030 PF01266 FAD dependent oxidoreductase JC965_20035 PF03009 Glycerophosphoryl diester phosphodiesterase family JC965_20040 PF00793 DAHP synthetase I family JC965_20045 PF01817 Chorismate mutase type II JC965_20045 PF02153 Prephenate dehydrogenase JC965_20050 PF03466 LysR substrate binding domain JC965_20050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_20055 PF04219 Protein of unknown function, DUF JC965_20060 PF03974 Ecotin JC965_20085 PF10531 SLBB domain JC965_20085 PF02563 Polysaccharide biosynthesis/export protein JC965_20090 PF01061 ABC-2 type transporter JC965_20095 PF00005 ABC transporter JC965_20105 PF00535 Glycosyl transferase family 2 JC965_20110 PF00535 Glycosyl transferase family 2 JC965_20150 PF07237 Protein of unknown function (DUF1428) JC965_20155 PF07690 Major Facilitator Superfamily JC965_20160 PF01040 UbiA prenyltransferase family JC965_20165 PF03626 Prokaryotic Cytochrome C oxidase subunit IV JC965_20170 PF00510 Cytochrome c oxidase subunit III JC965_20175 PF00115 Cytochrome C and Quinol oxidase polypeptide I JC965_20180 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JC965_20180 PF06481 COX Aromatic Rich Motif JC965_20190 PF03466 LysR substrate binding domain JC965_20190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_20200 PF01156 Inosine-uridine preferring nucleoside hydrolase JC965_20215 PF03605 Anaerobic c4-dicarboxylate membrane transporter JC965_20225 PF07687 Peptidase dimerisation domain JC965_20225 PF01546 Peptidase family M20/M25/M40 JC965_20230 PF03606 C4-dicarboxylate anaerobic carrier JC965_20245 PF00239 Resolvase, N terminal domain JC965_20245 PF02796 Helix-turn-helix domain of resolvase JC965_20320 PF03692 Putative zinc- or iron-chelating domain JC965_20325 PF01228 Glycine radical JC965_20325 PF02901 Pyruvate formate lyase-like JC965_20330 PF01226 Formate/nitrite transporter JC965_20335 PF18381 YcaO cyclodehydratase C-terminal domain JC965_20335 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding JC965_20345 PF00893 Small Multidrug Resistance protein JC965_20350 PF01118 Semialdehyde dehydrogenase, NAD binding domain JC965_20350 PF02774 Semialdehyde dehydrogenase, dimerisation domain JC965_20365 PF02589 LUD domain JC965_20370 PF02589 LUD domain JC965_20370 PF13183 4Fe-4S dicluster domain JC965_20370 PF11870 Domain of unknown function (DUF3390) JC965_20375 PF02754 Cysteine-rich domain JC965_20380 PF02652 L-lactate permease JC965_20385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_20385 PF03466 LysR substrate binding domain JC965_20410 PF01625 Peptide methionine sulfoxide reductase JC965_20425 PF05114 Protein of unknown function (DUF692) JC965_20445 PF08447 PAS fold JC965_20445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JC965_20445 PF13426 PAS domain JC965_20460 PF04632 Fusaric acid resistance protein family JC965_20475 PF01184 GPR1/FUN34/yaaH family JC965_20480 PF06167 Glucose-regulated metallo-peptidase M90 JC965_20490 PF01235 Sodium:alanine symporter family JC965_20495 PF00378 Enoyl-CoA hydratase/isomerase JC965_20510 PF04341 Protein of unknown function, DUF485 JC965_20515 PF00474 Sodium:solute symporter family JC965_20520 PF01546 Peptidase family M20/M25/M40 JC965_20520 PF07687 Peptidase dimerisation domain JC965_20535 PF05221 S-adenosyl-L-homocysteine hydrolase JC965_20535 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain JC965_20545 PF04264 YceI-like domain JC965_20550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_20550 PF03466 LysR substrate binding domain JC965_20560 PF01268 Formate--tetrahydrofolate ligase JC965_20580 PF00535 Glycosyl transferase family 2 JC965_20595 PF16363 GDP-mannose 4,6 dehydratase JC965_20600 PF04321 RmlD substrate binding domain JC965_20605 PF00483 Nucleotidyl transferase JC965_20610 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase JC965_20635 PF01047 MarR family JC965_20650 PF00127 Copper binding proteins, plastocyanin/azurin family JC965_20655 PF02424 ApbE family JC965_20660 PF00011 Hsp20/alpha crystallin family JC965_20665 PF00072 Response regulator receiver domain JC965_20675 PF03372 Endonuclease/Exonuclease/phosphatase family JC965_20685 PF03060 Nitronate monooxygenase JC965_20690 PF00445 Ribonuclease T2 family JC965_20710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_20710 PF16527 Two-component sensor protein CpxA, periplasmic domain JC965_20710 PF00672 HAMP domain JC965_20710 PF00512 His Kinase A (phospho-acceptor) domain JC965_20715 PF00072 Response regulator receiver domain JC965_20715 PF00486 Transcriptional regulatory protein, C terminal JC965_20720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JC965_20740 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JC965_20740 PF04073 Aminoacyl-tRNA editing domain JC965_20740 PF03129 Anticodon binding domain JC965_20745 PF00929 Exonuclease JC965_20750 PF00106 short chain dehydrogenase JC965_20765 PF00378 Enoyl-CoA hydratase/isomerase JC965_20770 PF10952 Protein of unknown function (DUF2753) JC965_20780 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JC965_20800 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JC965_20800 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JC965_20800 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JC965_20805 PF03102 NeuB family JC965_20805 PF08666 SAF domain JC965_20810 PF00459 Inositol monophosphatase family JC965_20815 PF02348 Cytidylyltransferase JC965_20865 PF00589 Phage integrase family JC965_20895 PF00300 Histidine phosphatase superfamily (branch 1) JC965_20900 PF00990 Diguanylate cyclase, GGDEF domain JC965_20900 PF00563 EAL domain JC965_20900 PF03707 Bacterial signalling protein N terminal repeat JC965_20915 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JC965_20915 PF17810 Arginine decarboxylase helical bundle domain JC965_20915 PF17944 Arginine decarboxylase C-terminal helical extension JC965_20935 PF01882 Protein of unknown function DUF58 JC965_20940 PF07726 ATPase family associated with various cellular activities (AAA) JC965_20940 PF17863 AAA lid domain JC965_20945 PF00108 Thiolase, N-terminal domain JC965_20945 PF02803 Thiolase, C-terminal domain JC965_20950 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JC965_20950 PF00378 Enoyl-CoA hydratase/isomerase JC965_20950 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JC965_20960 PF03009 Glycerophosphoryl diester phosphodiesterase family JC965_20965 PF00924 Mechanosensitive ion channel JC965_20965 PF12794 Mechanosensitive ion channel inner membrane domain 1 JC965_20965 PF12795 Mechanosensitive ion channel porin domain JC965_20975 PF01476 LysM domain JC965_20975 PF08525 Opacity-associated protein A N-terminal motif JC965_20975 PF01551 Peptidase family M23 JC965_21000 PF01906 Putative heavy-metal-binding JC965_21005 PF00884 Sulfatase JC965_21015 PF00696 Amino acid kinase family JC965_21015 PF01842 ACT domain JC965_21020 PF00583 Acetyltransferase (GNAT) family JC965_21020 PF00696 Amino acid kinase family JC965_21030 PF13700 Domain of unknown function (DUF4158) JC965_21030 PF01526 Tn3 transposase DDE domain JC965_21065 PF02796 Helix-turn-helix domain of resolvase JC965_21065 PF00239 Resolvase, N terminal domain JC965_21070 PF02371 Transposase IS116/IS110/IS902 family JC965_21070 PF01548 Transposase JC965_21080 PF12323 Helix-turn-helix domain JC965_21080 PF01385 Probable transposase JC965_21080 PF07282 Putative transposase DNA-binding domain JC965_21090 PF00356 Bacterial regulatory proteins, lacI family JC965_21095 PF00294 pfkB family carbohydrate kinase JC965_21100 PF13407 Periplasmic binding protein domain JC965_21105 PF02653 Branched-chain amino acid transport system / permease component JC965_21110 PF00005 ABC transporter JC965_21115 PF05025 RbsD / FucU transport protein family JC965_21120 PF00043 Glutathione S-transferase, C-terminal domain JC965_21120 PF02798 Glutathione S-transferase, N-terminal domain JC965_21140 PF00294 pfkB family carbohydrate kinase JC965_21145 PF01081 KDPG and KHG aldolase JC965_21160 PF13508 Acetyltransferase (GNAT) domain JC965_21180 PF01546 Peptidase family M20/M25/M40 JC965_21195 PF07282 Putative transposase DNA-binding domain JC965_21195 PF12323 Helix-turn-helix domain JC965_21195 PF01385 Probable transposase JC965_21200 PF17783 CvfB-like winged helix domain JC965_21200 PF13509 S1 domain JC965_21210 PF04269 Protein of unknown function, DUF440 JC965_21215 PF00912 Transglycosylase JC965_21220 PF04269 Protein of unknown function, DUF440 JC965_21225 PF03776 Septum formation topological specificity factor MinE JC965_21230 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JC965_21235 PF03775 Septum formation inhibitor MinC, C-terminal domain JC965_21235 PF05209 Septum formation inhibitor MinC, N-terminal domain JC965_21240 PF05166 YcgL domain JC965_21245 PF13406 Transglycosylase SLT domain JC965_21265 PF04542 Sigma-70 region 2 JC965_21265 PF08281 Sigma-70, region 4 JC965_21275 PF01794 Ferric reductase like transmembrane component JC965_21280 PF00174 Oxidoreductase molybdopterin binding domain JC965_21300 PF05114 Protein of unknown function (DUF692) JC965_21345 PF05598 Transposase domain (DUF772) JC965_21345 PF01609 Transposase DDE domain JC965_21430 PF00860 Permease family JC965_21440 PF03949 Malic enzyme, NAD binding domain JC965_21440 PF00390 Malic enzyme, N-terminal domain JC965_21445 PF12804 MobA-like NTP transferase domain JC965_21455 PF13358 DDE superfamily endonuclease JC965_21465 PF13419 Haloacid dehalogenase-like hydrolase JC965_21470 PF02222 ATP-grasp domain JC965_21470 PF01370 NAD dependent epimerase/dehydratase family JC965_21475 PF00892 EamA-like transporter family JC965_21480 PF02525 Flavodoxin-like fold JC965_21520 PF01051 Initiator Replication protein JC965_21560 PF12323 Helix-turn-helix domain JC965_21565 PF12323 Helix-turn-helix domain JC965_21565 PF01385 Probable transposase JC965_21565 PF07282 Putative transposase DNA-binding domain JC965_21570 PF07282 Putative transposase DNA-binding domain JC965_21570 PF01385 Probable transposase JC965_21570 PF12323 Helix-turn-helix domain JC965_21595 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region JC965_21595 PF01243 Pyridoxamine 5'-phosphate oxidase JC965_21610 PF01029 NusB family JC965_21610 PF01189 16S rRNA methyltransferase RsmB/F JC965_21615 PF00462 Glutaredoxin JC965_21620 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JC965_21620 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JC965_21635 PF00107 Zinc-binding dehydrogenase JC965_21635 PF08240 Alcohol dehydrogenase GroES-like domain JC965_21640 PF00440 Bacterial regulatory proteins, tetR family JC965_21640 PF16925 Tetracyclin repressor-like, C-terminal domain JC965_21645 PF04226 Transglycosylase associated protein JC965_21650 PF00149 Calcineurin-like phosphoesterase JC965_21660 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JC965_21665 PF09190 DALR domain JC965_21665 PF01406 tRNA synthetases class I (C) catalytic domain JC965_21680 PF00136 DNA polymerase family B JC965_21680 PF03104 DNA polymerase family B, exonuclease domain JC965_21710 PF01554 MatE JC965_21715 PF06786 Uncharacterised protein family (UPF0253) JC965_21720 PF00677 Lumazine binding domain JC965_21735 PF02403 Seryl-tRNA synthetase N-terminal domain JC965_21735 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JC965_21740 PF02674 Colicin V production protein JC965_21745 PF00156 Phosphoribosyl transferase domain JC965_21765 PF13309 HTH domain JC965_21765 PF08348 YheO-like PAS domain JC965_21770 PF01042 Endoribonuclease L-PSP JC965_21775 PF02635 DsrE/DsrF-like family JC965_21780 PF02635 DsrE/DsrF-like family JC965_21785 PF04077 DsrH like protein JC965_21790 PF00164 Ribosomal protein S12/S23 JC965_21795 PF00177 Ribosomal protein S7p/S5e JC965_21800 PF03144 Elongation factor Tu domain 2 JC965_21800 PF00009 Elongation factor Tu GTP binding domain JC965_21800 PF00679 Elongation factor G C-terminus JC965_21800 PF03764 Elongation factor G, domain IV JC965_21800 PF14492 Elongation Factor G, domain II JC965_21810 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) JC965_21815 PF07348 Syd protein (SUKH-2) JC965_21820 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term JC965_21820 PF14489 QueF-like protein JC965_21830 PF00990 Diguanylate cyclase, GGDEF domain JC965_21840 PF03466 LysR substrate binding domain JC965_21840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_21850 PF03279 Bacterial lipid A biosynthesis acyltransferase JC965_21855 PF03279 Bacterial lipid A biosynthesis acyltransferase JC965_21875 PF01381 Helix-turn-helix JC965_21880 PF07804 HipA-like C-terminal domain JC965_21880 PF13657 HipA N-terminal domain JC965_21900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_21900 PF03466 LysR substrate binding domain JC965_21925 PF02384 N-6 DNA Methylase JC965_21935 PF08401 Domain of unknown function (DUF1738) JC965_21935 PF18818 Metallopeptidase superfamily domain JC965_21935 PF13362 Toprim domain JC965_21945 PF09722 Protein of unknown function (DUF2384) JC965_21980 PF00579 tRNA synthetases class I (W and Y) JC965_21985 PF01476 LysM domain JC965_21985 PF08525 Opacity-associated protein A N-terminal motif JC965_21985 PF01551 Peptidase family M23 JC965_21990 PF03702 Anhydro-N-acetylmuramic acid kinase JC965_22015 PF00528 Binding-protein-dependent transport system inner membrane component JC965_22020 PF00528 Binding-protein-dependent transport system inner membrane component JC965_22025 PF00497 Bacterial extracellular solute-binding proteins, family 3 JC965_22030 PF00005 ABC transporter JC965_22035 PF03956 Lysine exporter LysO JC965_22050 PF00512 His Kinase A (phospho-acceptor) domain JC965_22050 PF00497 Bacterial extracellular solute-binding proteins, family 3 JC965_22050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_22050 PF00072 Response regulator receiver domain JC965_22055 PF00486 Transcriptional regulatory protein, C terminal JC965_22055 PF00072 Response regulator receiver domain JC965_22090 PF02321 Outer membrane efflux protein JC965_22120 PF01695 IstB-like ATP binding protein JC965_22130 PF13438 Domain of unknown function (DUF4113) JC965_22130 PF00817 impB/mucB/samB family JC965_22130 PF11799 impB/mucB/samB family C-terminal domain JC965_22130 PF11798 IMS family HHH motif JC965_22135 PF00717 Peptidase S24-like JC965_22140 PF00563 EAL domain JC965_22140 PF12792 CSS motif domain associated with EAL JC965_22160 PF01385 Probable transposase JC965_22160 PF07282 Putative transposase DNA-binding domain JC965_22160 PF12323 Helix-turn-helix domain JC965_22170 PF01966 HD domain JC965_22175 PF01479 S4 domain JC965_22175 PF00849 RNA pseudouridylate synthase JC965_22185 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JC965_22225 PF00916 Sulfate permease family JC965_22225 PF01740 STAS domain JC965_22255 PF01555 DNA methylase JC965_22255 PF18273 Type III R-M EcoP15I C-terminal domain JC965_22275 PF00497 Bacterial extracellular solute-binding proteins, family 3 JC965_22280 PF00528 Binding-protein-dependent transport system inner membrane component JC965_22285 PF00005 ABC transporter JC965_22290 PF04116 Fatty acid hydroxylase superfamily JC965_22315 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase JC965_22335 PF01168 Alanine racemase, N-terminal domain JC965_22335 PF00842 Alanine racemase, C-terminal domain JC965_22365 PF01695 IstB-like ATP binding protein JC965_22390 PF00873 AcrB/AcrD/AcrF family JC965_22395 PF00529 HlyD membrane-fusion protein of T1SS JC965_22395 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JC965_22405 PF00486 Transcriptional regulatory protein, C terminal JC965_22405 PF00072 Response regulator receiver domain JC965_22410 PF00672 HAMP domain JC965_22410 PF00512 His Kinase A (phospho-acceptor) domain JC965_22410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_22435 PF02470 MlaD protein JC965_22440 PF04403 Paraquat-inducible protein A JC965_22455 PF01385 Probable transposase JC965_22455 PF07282 Putative transposase DNA-binding domain JC965_22455 PF12323 Helix-turn-helix domain JC965_22465 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JC965_22465 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JC965_22470 PF00849 RNA pseudouridylate synthase JC965_22470 PF01479 S4 domain JC965_22480 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JC965_22480 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JC965_22485 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase JC965_22490 PF00497 Bacterial extracellular solute-binding proteins, family 3 JC965_22490 PF00512 His Kinase A (phospho-acceptor) domain JC965_22490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JC965_22490 PF01627 Hpt domain JC965_22490 PF00989 PAS fold JC965_22490 PF00072 Response regulator receiver domain JC965_22495 PF07282 Putative transposase DNA-binding domain JC965_22495 PF12323 Helix-turn-helix domain JC965_22495 PF01385 Probable transposase JC965_22510 PF03960 ArsC family JC965_22515 PF00578 AhpC/TSA family JC965_22520 PF01435 Peptidase family M48 JC965_22520 PF13181 Tetratricopeptide repeat JC965_22540 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase JC965_22545 PF14667 Polysaccharide biosynthesis C-terminal domain JC965_22545 PF01943 Polysaccharide biosynthesis protein JC965_22560 PF01695 IstB-like ATP binding protein JC965_22590 PF03788 LrgA family JC965_22595 PF04172 LrgB-like family JC965_22600 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region JC965_22600 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JC965_22620 PF00535 Glycosyl transferase family 2 JC965_22625 PF00535 Glycosyl transferase family 2 JC965_22650 PF13005 zinc-finger binding domain of transposase IS66 JC965_22650 PF13007 Transposase C of IS166 homeodomain JC965_22650 PF03050 Transposase IS66 family JC965_22650 PF13817 IS66 C-terminal element JC965_22655 PF12241 Trans-2-enoyl-CoA reductase catalytic region JC965_22655 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase JC965_22655 PF07055 Enoyl reductase FAD binding domain JC965_22725 PF02661 Fic/DOC family JC965_22725 PF13784 Fic/DOC family N-terminal JC965_22745 PF05598 Transposase domain (DUF772) JC965_22745 PF01609 Transposase DDE domain JC965_22765 PF00239 Resolvase, N terminal domain JC965_22765 PF02796 Helix-turn-helix domain of resolvase JC965_22770 PF08447 PAS fold JC965_22770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JC965_22790 PF03432 Relaxase/Mobilisation nuclease domain JC965_22805 PF00990 Diguanylate cyclase, GGDEF domain JC965_22805 PF13185 GAF domain JC965_22835 PF00145 C-5 cytosine-specific DNA methylase JC965_22855 PF05159 Capsule polysaccharide biosynthesis protein JC965_22910 PF00892 EamA-like transporter family JC965_22915 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JC965_22935 PF03466 LysR substrate binding domain JC965_22935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JC965_22945 PF10689 Protein of unknown function (DUF2496) JC965_22995 PF03350 Uncharacterized protein family, UPF0114 JC965_23010 PF08859 DGC domain JC965_23040 PF00497 Bacterial extracellular solute-binding proteins, family 3 JC965_23060 PF01575 MaoC like domain JC965_23085 PF14403 Circularly permuted ATP-grasp type 2 JC965_23090 PF14403 Circularly permuted ATP-grasp type 2 JC965_23090 PF04168 A predicted alpha-helical domain with a conserved ER motif. JC965_23110 PF04321 RmlD substrate binding domain JC965_23115 PF16363 GDP-mannose 4,6 dehydratase JC965_23140 PF01609 Transposase DDE domain JC965_23140 PF05598 Transposase domain (DUF772) JC965_23165 PF12323 Helix-turn-helix domain JC965_23175 PF00892 EamA-like transporter family JC965_23185 PF08447 PAS fold JC965_23185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JC965_23185 PF13426 PAS domain JC965_23210 PF12323 Helix-turn-helix domain JC965_23210 PF07282 Putative transposase DNA-binding domain JC965_23210 PF01385 Probable transposase JC965_23230 PF05598 Transposase domain (DUF772) JC965_23230 PF01609 Transposase DDE domain JC965_23245 PF00816 H-NS histone family JC965_23270 PF01386 Ribosomal L25p family JC965_23295 PF07282 Putative transposase DNA-binding domain JC965_23295 PF12323 Helix-turn-helix domain JC965_23295 PF01385 Probable transposase JC965_23305 PF12323 Helix-turn-helix domain JC965_23305 PF07282 Putative transposase DNA-binding domain JC965_23305 PF01385 Probable transposase JC965_23310 PF01695 IstB-like ATP binding protein JC965_23315 PF00665 Integrase core domain JC965_23320 PF01695 IstB-like ATP binding protein JC965_23325 PF00665 Integrase core domain JC965_23330 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin JC965_23335 PF18693 TRAM domain JC965_23335 PF04055 Radical SAM superfamily JC965_23335 PF00919 Uncharacterized protein family UPF0004 JC965_23340 PF12323 Helix-turn-helix domain JC965_23340 PF01385 Probable transposase JC965_23340 PF07282 Putative transposase DNA-binding domain JC965_23355 PF00816 H-NS histone family JC965_23445 PF05598 Transposase domain (DUF772) JC965_23445 PF01609 Transposase DDE domain JC965_23465 PF01594 AI-2E family transporter JC965_23495 PF00989 PAS fold JC965_23495 PF00990 Diguanylate cyclase, GGDEF domain JC965_23495 PF01590 GAF domain JC965_23495 PF00563 EAL domain JC965_23540 PF07282 Putative transposase DNA-binding domain JC965_23540 PF12323 Helix-turn-helix domain JC965_23540 PF01385 Probable transposase JC965_23545 PF17200 Single Cache domain 2 JC965_23545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JC965_23545 PF00672 HAMP domain JC965_23570 PF01385 Probable transposase JC965_23570 PF07282 Putative transposase DNA-binding domain JC965_23570 PF12323 Helix-turn-helix domain JC965_23580 PF01051 Initiator Replication protein JC965_23620 PF12323 Helix-turn-helix domain JC965_23620 PF01385 Probable transposase JC965_23620 PF07282 Putative transposase DNA-binding domain JC965_23625 PF13592 Winged helix-turn helix JC965_23625 PF13358 DDE superfamily endonuclease JC965_23630 PF12323 Helix-turn-helix domain JC965_23630 PF01385 Probable transposase JC965_23630 PF07282 Putative transposase DNA-binding domain JC965_23640 PF11849 Domain of unknown function (DUF3369) JC965_23670 PF12323 Helix-turn-helix domain JC965_23760 PF01381 Helix-turn-helix JC965_23900 PF00873 AcrB/AcrD/AcrF family JC965_23935 PF00665 Integrase core domain JC965_24020 PF02378 Phosphotransferase system, EIIC JC965_24020 PF00367 phosphotransferase system, EIIB JC965_24080 PF12323 Helix-turn-helix domain JC965_24165 PF02384 N-6 DNA Methylase JC965_24190 PF02371 Transposase IS116/IS110/IS902 family JC965_24190 PF01548 Transposase JC965_24270 PF13542 Helix-turn-helix domain of transposase family ISL3 JC965_24270 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JC965_24270 PF01610 Transposase JC965_24280 PF05598 Transposase domain (DUF772) JC965_24280 PF01609 Transposase DDE domain JC965_24305 PF02384 N-6 DNA Methylase JC965_24340 PF05598 Transposase domain (DUF772) JC965_24340 PF01609 Transposase DDE domain JC965_24360 PF01695 IstB-like ATP binding protein JC965_24380 PF01381 Helix-turn-helix JC965_24450 PF00313 'Cold-shock' DNA-binding domain JC965_24485 PF13592 Winged helix-turn helix JC965_24485 PF13358 DDE superfamily endonuclease JC965_24670 PF00145 C-5 cytosine-specific DNA methylase JC965_24675 PF00145 C-5 cytosine-specific DNA methylase JC965_24680 PF00145 C-5 cytosine-specific DNA methylase JC965_24840 PF01609 Transposase DDE domain JC965_24840 PF05598 Transposase domain (DUF772) JC965_24870 PF01695 IstB-like ATP binding protein JC965_24925 PF01381 Helix-turn-helix JC965_24945 PF01695 IstB-like ATP binding protein JC965_24990 PF01695 IstB-like ATP binding protein JC965_25055 PF12323 Helix-turn-helix domain JC965_25055 PF01385 Probable transposase JC965_25055 PF07282 Putative transposase DNA-binding domain JC965_25155 PF01695 IstB-like ATP binding protein JC965_25195 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system JC965_25220 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system JC965_25305 PF12323 Helix-turn-helix domain JC965_25355 PF12323 Helix-turn-helix domain JC965_25430 PF01695 IstB-like ATP binding protein JC965_25475 PF07282 Putative transposase DNA-binding domain JC965_25475 PF01385 Probable transposase JC965_25475 PF12323 Helix-turn-helix domain JC965_25505 PF00367 phosphotransferase system, EIIB JC965_25505 PF02378 Phosphotransferase system, EIIC JC965_25525 PF01385 Probable transposase JC965_25525 PF12323 Helix-turn-helix domain JC965_25525 PF07282 Putative transposase DNA-binding domain JC965_25545 PF12323 Helix-turn-helix domain JC965_25565 PF02899 Phage integrase, N-terminal SAM-like domain JC965_25565 PF00589 Phage integrase family JC965_25590 PF07282 Putative transposase DNA-binding domain JC965_25590 PF12323 Helix-turn-helix domain JC965_25590 PF01385 Probable transposase JC965_25620 PF07282 Putative transposase DNA-binding domain JC965_25620 PF12323 Helix-turn-helix domain JC965_25620 PF01385 Probable transposase JC965_25730 PF07282 Putative transposase DNA-binding domain JC965_25730 PF12323 Helix-turn-helix domain JC965_25730 PF01385 Probable transposase JC965_25735 PF12323 Helix-turn-helix domain JC965_25735 PF01385 Probable transposase JC965_25735 PF07282 Putative transposase DNA-binding domain JC965_25840 PF05598 Transposase domain (DUF772) JC965_25840 PF01609 Transposase DDE domain JC965_25865 PF12323 Helix-turn-helix domain JC965_25865 PF07282 Putative transposase DNA-binding domain JC965_25865 PF01385 Probable transposase