locus-tag class description JH254_00020 PF18337 RapA N-terminal Tudor like domain JH254_00020 PF00271 Helicase conserved C-terminal domain JH254_00020 PF12137 RNA polymerase recycling family C-terminal JH254_00020 PF18339 RapA N-terminal Tudor like domain 1 JH254_00020 PF00176 SNF2 family N-terminal domain JH254_00025 PF00849 RNA pseudouridylate synthase JH254_00035 PF00563 EAL domain JH254_00035 PF03707 Bacterial signalling protein N terminal repeat JH254_00035 PF00990 Diguanylate cyclase, GGDEF domain JH254_00045 PF00118 TCP-1/cpn60 chaperonin family JH254_00050 PF00166 Chaperonin 10 Kd subunit JH254_00055 PF01554 MatE JH254_00060 PF04186 FxsA cytoplasmic membrane protein JH254_00065 PF10415 Fumarase C C-terminus JH254_00065 PF00206 Lyase JH254_00070 PF03605 Anaerobic c4-dicarboxylate membrane transporter JH254_00075 PF04262 Glutamate-cysteine ligase JH254_00080 PF05193 Peptidase M16 inactive domain JH254_00080 PF00675 Insulinase (Peptidase family M16) JH254_00085 PF09335 SNARE associated Golgi protein JH254_00090 PF00107 Zinc-binding dehydrogenase JH254_00090 PF08240 Alcohol dehydrogenase GroES-like domain JH254_00115 PF00175 Oxidoreductase NAD-binding domain JH254_00115 PF00970 Oxidoreductase FAD-binding domain JH254_00120 PF01281 Ribosomal protein L9, N-terminal domain JH254_00120 PF03948 Ribosomal protein L9, C-terminal domain JH254_00125 PF01084 Ribosomal protein S18 JH254_00130 PF01250 Ribosomal protein S6 JH254_00135 PF01566 Natural resistance-associated macrophage protein JH254_00140 PF02272 DHHA1 domain JH254_00140 PF01411 tRNA synthetases class II (A) JH254_00140 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JH254_00145 PF13673 Acetyltransferase (GNAT) domain JH254_00160 PF08032 RNA 2'-O ribose methyltransferase substrate binding JH254_00160 PF00588 SpoU rRNA Methylase family JH254_00165 PF00575 S1 RNA binding domain JH254_00165 PF00773 RNB domain JH254_00165 PF08206 Ribonuclease B OB domain JH254_00165 PF08461 Ribonuclease R winged-helix domain JH254_00165 PF17876 Cold shock domain JH254_00170 PF00990 Diguanylate cyclase, GGDEF domain JH254_00175 PF02664 S-Ribosylhomocysteinase (LuxS) JH254_00185 PF00543 Nitrogen regulatory protein P-II JH254_00190 PF00795 Carbon-nitrogen hydrolase JH254_00190 PF02540 NAD synthase JH254_00220 PF02401 LytB protein JH254_00225 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JH254_00230 PF01252 Signal peptidase (SPase) II JH254_00235 PF08264 Anticodon-binding domain of tRNA JH254_00235 PF00133 tRNA synthetases class I (I, L, M and V) JH254_00235 PF06827 Zinc finger found in FPG and IleRS JH254_00240 PF01687 Riboflavin kinase JH254_00240 PF06574 FAD synthetase JH254_00245 PF03023 Lipid II flippase MurJ JH254_00250 PF01649 Ribosomal protein S20 JH254_00255 PF01022 Bacterial regulatory protein, arsR family JH254_00260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_00260 PF03466 LysR substrate binding domain JH254_00270 PF06965 Na+/H+ antiporter 1 JH254_00275 PF00303 Thymidylate synthase JH254_00280 PF01790 Prolipoprotein diacylglyceryl transferase JH254_00285 PF05524 PEP-utilising enzyme, N-terminal JH254_00285 PF00391 PEP-utilising enzyme, mobile domain JH254_00285 PF01590 GAF domain JH254_00285 PF02896 PEP-utilising enzyme, TIM barrel domain JH254_00290 PF00293 NUDIX domain JH254_00295 PF02976 DNA mismatch repair enzyme MutH JH254_00305 PF01245 Ribosomal protein L19 JH254_00310 PF01746 tRNA (Guanine-1)-methyltransferase JH254_00315 PF05239 PRC-barrel domain JH254_00315 PF01782 RimM N-terminal domain JH254_00320 PF00886 Ribosomal protein S16 JH254_00325 PF00448 SRP54-type protein, GTPase domain JH254_00325 PF02881 SRP54-type protein, helical bundle domain JH254_00325 PF02978 Signal peptide binding domain JH254_00330 PF01578 Cytochrome C assembly protein JH254_00335 PF01595 Cyclin M transmembrane N-terminal domain JH254_00335 PF03471 Transporter associated domain JH254_00335 PF00571 CBS domain JH254_00340 PF02082 Transcriptional regulator JH254_00345 PF00042 Globin JH254_00345 PF00970 Oxidoreductase FAD-binding domain JH254_00345 PF00175 Oxidoreductase NAD-binding domain JH254_00350 PF08238 Sel1 repeat JH254_00355 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JH254_00355 PF00056 lactate/malate dehydrogenase, NAD binding domain JH254_00360 PF00528 Binding-protein-dependent transport system inner membrane component JH254_00365 PF00528 Binding-protein-dependent transport system inner membrane component JH254_00370 PF00497 Bacterial extracellular solute-binding proteins, family 3 JH254_00375 PF00005 ABC transporter JH254_00380 PF02863 Arginine repressor, C-terminal domain JH254_00380 PF01316 Arginine repressor, DNA binding domain JH254_00385 PF04261 Dyp-type peroxidase family JH254_00390 PF08402 TOBE domain JH254_00390 PF00005 ABC transporter JH254_00405 PF00543 Nitrogen regulatory protein P-II JH254_00410 PF00472 RF-1 domain JH254_00415 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JH254_00415 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JH254_00420 PF07670 Nucleoside recognition JH254_00420 PF01773 Na+ dependent nucleoside transporter N-terminus JH254_00420 PF07662 Na+ dependent nucleoside transporter C-terminus JH254_00425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_00425 PF03466 LysR substrate binding domain JH254_00430 PF00255 Glutathione peroxidase JH254_00440 PF02595 Glycerate kinase family JH254_00445 PF02447 GntP family permease JH254_00450 PF17853 GGDEF-like domain JH254_00450 PF13556 PucR C-terminal helix-turn-helix domain JH254_00450 PF05651 Putative sugar diacid recognition JH254_00455 PF06062 Uncharacterised protein family (UPF0231) JH254_00475 PF02594 Uncharacterised ACR, YggU family COG1872 JH254_00480 PF02325 YGGT family JH254_00485 PF03807 NADP oxidoreductase coenzyme F420-dependent JH254_00485 PF14748 Pyrroline-5-carboxylate reductase dimerisation JH254_00490 PF01168 Alanine racemase, N-terminal domain JH254_00495 PF00437 Type II/IV secretion system protein JH254_00500 PF00437 Type II/IV secretion system protein JH254_00505 PF03883 Peroxide stress protein YaaA JH254_00510 PF00270 DEAD/DEAH box helicase JH254_00510 PF00271 Helicase conserved C-terminal domain JH254_00515 PF05175 Methyltransferase small domain JH254_00520 PF05525 Branched-chain amino acid transport protein JH254_00535 PF01475 Ferric uptake regulator family JH254_00540 PF01207 Dihydrouridine synthase (Dus) JH254_00555 PF00216 Bacterial DNA-binding protein JH254_00560 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ JH254_00565 PF07238 PilZ domain JH254_00570 PF18073 Rubredoxin metal binding domain JH254_00585 PF18429 Domain of unknown function (DUF5609) JH254_00595 PF08447 PAS fold JH254_00595 PF08448 PAS fold JH254_00595 PF00563 EAL domain JH254_00595 PF13426 PAS domain JH254_00595 PF05231 MASE1 JH254_00595 PF00990 Diguanylate cyclase, GGDEF domain JH254_00600 PF01048 Phosphorylase superfamily JH254_00605 PF01676 Metalloenzyme superfamily JH254_00610 PF02885 Glycosyl transferase family, helical bundle domain JH254_00610 PF00591 Glycosyl transferase family, a/b domain JH254_00610 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain JH254_00615 PF01791 DeoC/LacD family aldolase JH254_00625 PF07670 Nucleoside recognition JH254_00625 PF07662 Na+ dependent nucleoside transporter C-terminus JH254_00625 PF01773 Na+ dependent nucleoside transporter N-terminus JH254_00630 PF01026 TatD related DNase JH254_00635 PF07963 Prokaryotic N-terminal methylation motif JH254_00650 PF05958 tRNA (Uracil-5-)-methyltransferase JH254_00650 PF01938 TRAM domain JH254_00655 PF00909 Ammonium Transporter Family JH254_00720 PF03739 Lipopolysaccharide export system permease LptF/LptG JH254_00725 PF03739 Lipopolysaccharide export system permease LptF/LptG JH254_00730 PF00883 Cytosol aminopeptidase family, catalytic domain JH254_00730 PF02789 Cytosol aminopeptidase family, N-terminal domain JH254_00740 PF08264 Anticodon-binding domain of tRNA JH254_00740 PF00133 tRNA synthetases class I (I, L, M and V) JH254_00740 PF10458 Valyl tRNA synthetase tRNA binding arm JH254_00745 PF01595 Cyclin M transmembrane N-terminal domain JH254_00745 PF00571 CBS domain JH254_00745 PF03471 Transporter associated domain JH254_00750 PF09335 SNARE associated Golgi protein JH254_00755 PF00768 D-alanyl-D-alanine carboxypeptidase JH254_00790 PF02599 Global regulator protein family JH254_00795 PF00696 Amino acid kinase family JH254_00795 PF13840 ACT domain JH254_00795 PF01842 ACT domain JH254_00800 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JH254_00800 PF02272 DHHA1 domain JH254_00800 PF01411 tRNA synthetases class II (A) JH254_00810 PF02631 RecX family JH254_00815 PF00154 recA bacterial DNA recombination protein JH254_00820 PF02464 Competence-damaged protein JH254_00830 PF00488 MutS domain V JH254_00830 PF05188 MutS domain II JH254_00830 PF05192 MutS domain III JH254_00830 PF01624 MutS domain I JH254_00830 PF05190 MutS family domain IV JH254_00835 PF02028 BCCT, betaine/carnitine/choline family transporter JH254_00875 PF02660 Glycerol-3-phosphate acyltransferase JH254_00880 PF02152 Dihydroneopterin aldolase JH254_00885 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JH254_00895 PF07690 Major Facilitator Superfamily JH254_00900 PF07683 Cobalamin synthesis protein cobW C-terminal domain JH254_00900 PF02492 CobW/HypB/UreG, nucleotide-binding domain JH254_00905 PF01565 FAD binding domain JH254_00905 PF04030 D-arabinono-1,4-lactone oxidase JH254_00910 PF01810 LysE type translocator JH254_00915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_00915 PF03466 LysR substrate binding domain JH254_00920 PF00563 EAL domain JH254_00920 PF12792 CSS motif domain associated with EAL JH254_00925 PF00330 Aconitase family (aconitate hydratase) JH254_00925 PF06434 Aconitate hydratase 2 N-terminus JH254_00925 PF11791 Aconitate B N-terminal domain JH254_00930 PF01734 Patatin-like phospholipase JH254_00935 PF00672 HAMP domain JH254_00935 PF12729 Four helix bundle sensory module for signal transduction JH254_00935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JH254_00945 PF07992 Pyridine nucleotide-disulphide oxidoreductase JH254_00945 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JH254_00950 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JH254_00950 PF02817 e3 binding domain JH254_00950 PF00364 Biotin-requiring enzyme JH254_00955 PF00456 Transketolase, thiamine diphosphate binding domain JH254_00955 PF17831 Pyruvate dehydrogenase E1 component middle domain JH254_00960 PF07729 FCD domain JH254_00960 PF00392 Bacterial regulatory proteins, gntR family JH254_00965 PF01510 N-acetylmuramoyl-L-alanine amidase JH254_00975 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain JH254_00975 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain JH254_00980 PF07963 Prokaryotic N-terminal methylation motif JH254_00985 PF00437 Type II/IV secretion system protein JH254_00985 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JH254_00990 PF00482 Type II secretion system (T2SS), protein F JH254_00995 PF01478 Type IV leader peptidase family JH254_00995 PF06750 Bacterial Peptidase A24 N-terminal domain JH254_01000 PF01121 Dephospho-CoA kinase JH254_01005 PF07072 Cell division protein JH254_01010 PF03884 DNA gyrase inhibitor YacG JH254_01015 PF00293 NUDIX domain JH254_01025 PF07516 SecA Wing and Scaffold domain JH254_01025 PF01043 SecA preprotein cross-linking domain JH254_01025 PF07517 SecA DEAD-like domain JH254_01025 PF02810 SEC-C motif JH254_01035 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase JH254_01040 PF12327 FtsZ family, C-terminal domain JH254_01040 PF00091 Tubulin/FtsZ family, GTPase domain JH254_01045 PF02491 SHS2 domain inserted in FTSA JH254_01050 PF08478 POTRA domain, FtsQ-type JH254_01050 PF03799 Cell division protein FtsQ JH254_01055 PF02875 Mur ligase family, glutamate ligase domain JH254_01055 PF08245 Mur ligase middle domain JH254_01055 PF01225 Mur ligase family, catalytic domain JH254_01060 PF04101 Glycosyltransferase family 28 C-terminal domain JH254_01060 PF03033 Glycosyltransferase family 28 N-terminal domain JH254_01065 PF01098 Cell cycle protein JH254_01070 PF02875 Mur ligase family, glutamate ligase domain JH254_01070 PF08245 Mur ligase middle domain JH254_01075 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 JH254_01075 PF00953 Glycosyl transferase family 4 JH254_01080 PF02875 Mur ligase family, glutamate ligase domain JH254_01080 PF08245 Mur ligase middle domain JH254_01080 PF01225 Mur ligase family, catalytic domain JH254_01085 PF02875 Mur ligase family, glutamate ligase domain JH254_01085 PF01225 Mur ligase family, catalytic domain JH254_01085 PF08245 Mur ligase middle domain JH254_01090 PF03717 Penicillin-binding Protein dimerisation domain JH254_01090 PF00905 Penicillin binding protein transpeptidase domain JH254_01095 PF04999 Cell division protein FtsL JH254_01100 PF01795 MraW methylase family JH254_01105 PF02381 MraZ protein, putative antitoxin-like JH254_01115 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JH254_01120 PF04348 LppC putative lipoprotein JH254_01125 PF02021 Uncharacterised protein family UPF0102 JH254_01130 PF13580 SIS domain JH254_01135 PF04972 BON domain JH254_01140 PF04386 Stringent starvation protein B JH254_01145 PF02798 Glutathione S-transferase, N-terminal domain JH254_01145 PF00043 Glutathione S-transferase, C-terminal domain JH254_01150 PF02167 Cytochrome C1 family JH254_01155 PF00033 Cytochrome b/b6/petB JH254_01155 PF00032 Cytochrome b(C-terminal)/b6/petD JH254_01160 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal JH254_01160 PF00355 Rieske [2Fe-2S] domain JH254_01165 PF00380 Ribosomal protein S9/S16 JH254_01170 PF00572 Ribosomal protein L13 JH254_01175 PF03969 AFG1-like ATPase JH254_01185 PF13180 PDZ domain JH254_01185 PF00595 PDZ domain JH254_01190 PF13180 PDZ domain JH254_01220 PF01979 Amidohydrolase family JH254_01225 PF03841 L-seryl-tRNA selenium transferase JH254_01230 PF07071 KDGP aldolase JH254_01235 PF02378 Phosphotransferase system, EIIC JH254_01235 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JH254_01235 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JH254_01240 PF00381 PTS HPr component phosphorylation site JH254_01245 PF03668 P-loop ATPase protein family JH254_01250 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JH254_01255 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JH254_01260 PF04963 Sigma-54 factor, core binding domain JH254_01260 PF04552 Sigma-54, DNA binding domain JH254_01260 PF00309 Sigma-54 factor, Activator interacting domain (AID) JH254_01265 PF00005 ABC transporter JH254_01265 PF12399 Branched-chain amino acid ATP-binding cassette transporter JH254_01270 PF03968 OstA-like protein JH254_01285 PF01380 SIS domain JH254_01285 PF00571 CBS domain JH254_01290 PF00005 ABC transporter JH254_01295 PF02405 Permease MlaE JH254_01300 PF02470 MlaD protein JH254_01305 PF05494 MlaC protein JH254_01315 PF01722 BolA-like protein JH254_01320 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JH254_01325 PF03692 Putative zinc- or iron-chelating domain JH254_01330 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded JH254_01340 PF08241 Methyltransferase domain JH254_01345 PF00583 Acetyltransferase (GNAT) family JH254_01345 PF13508 Acetyltransferase (GNAT) domain JH254_01350 PF00593 TonB dependent receptor JH254_01350 PF07715 TonB-dependent Receptor Plug Domain JH254_01360 PF01638 HxlR-like helix-turn-helix JH254_01365 PF08803 Putative mono-oxygenase ydhR JH254_01380 PF06055 Exopolysaccharide synthesis, ExoD JH254_01385 PF00990 Diguanylate cyclase, GGDEF domain JH254_01390 PF13036 Peptidoglycan-synthase activator LpoB JH254_01395 PF00132 Bacterial transferase hexapeptide (six repeats) JH254_01410 PF00884 Sulfatase JH254_01420 PF00128 Alpha amylase, catalytic domain JH254_01420 PF16657 Maltogenic Amylase, C-terminal domain JH254_01420 PF02903 Alpha amylase, N-terminal ig-like domain JH254_01425 PF02308 MgtC family JH254_01445 PF00106 short chain dehydrogenase JH254_01460 PF00465 Iron-containing alcohol dehydrogenase JH254_01470 PF01053 Cys/Met metabolism PLP-dependent enzyme JH254_01480 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JH254_01480 PF12793 Sugar transport-related sRNA regulator N-term JH254_01500 PF00561 alpha/beta hydrolase fold JH254_01510 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JH254_01510 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JH254_01515 PF02698 DUF218 domain JH254_01520 PF01752 Collagenase JH254_01520 PF08453 Peptidase family M9 N-terminal JH254_01525 PF00501 AMP-binding enzyme JH254_01525 PF13193 AMP-binding enzyme C-terminal domain JH254_01530 PF13378 Enolase C-terminal domain-like JH254_01535 PF00378 Enoyl-CoA hydratase/isomerase JH254_01540 PF12697 Alpha/beta hydrolase family JH254_01545 PF16582 Middle domain of thiamine pyrophosphate JH254_01545 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JH254_01545 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JH254_01550 PF00425 chorismate binding enzyme JH254_01555 PF01040 UbiA prenyltransferase family JH254_01575 PF00270 DEAD/DEAH box helicase JH254_01575 PF03880 DbpA RNA binding domain JH254_01575 PF00271 Helicase conserved C-terminal domain JH254_01580 PF01773 Na+ dependent nucleoside transporter N-terminus JH254_01580 PF07662 Na+ dependent nucleoside transporter C-terminus JH254_01580 PF07670 Nucleoside recognition JH254_01595 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 JH254_01600 PF01544 CorA-like Mg2+ transporter protein JH254_01615 PF02080 TrkA-C domain JH254_01615 PF00999 Sodium/hydrogen exchanger family JH254_01615 PF03471 Transporter associated domain JH254_01620 PF05068 Mannitol repressor JH254_01625 PF08125 Mannitol dehydrogenase C-terminal domain JH254_01625 PF01232 Mannitol dehydrogenase Rossmann domain JH254_01630 PF02378 Phosphotransferase system, EIIC JH254_01630 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JH254_01630 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JH254_01635 PF17876 Cold shock domain JH254_01635 PF08206 Ribonuclease B OB domain JH254_01635 PF00773 RNB domain JH254_01640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_01640 PF03466 LysR substrate binding domain JH254_01645 PF00765 Autoinducer synthase JH254_01650 PF03472 Autoinducer binding domain JH254_01650 PF00196 Bacterial regulatory proteins, luxR family JH254_01655 PF01810 LysE type translocator JH254_01660 PF02872 5'-nucleotidase, C-terminal domain JH254_01660 PF00149 Calcineurin-like phosphoesterase JH254_01665 PF03279 Bacterial lipid A biosynthesis acyltransferase JH254_01670 PF00294 pfkB family carbohydrate kinase JH254_01670 PF01467 Cytidylyltransferase-like JH254_01675 PF02321 Outer membrane efflux protein JH254_01680 PF00293 NUDIX domain JH254_01685 PF06853 Protein of unknown function (DUF1249) JH254_01690 PF00149 Calcineurin-like phosphoesterase JH254_01695 PF05728 Uncharacterised protein family (UPF0227) JH254_01700 PF00293 NUDIX domain JH254_01710 PF07869 Protein of unknown function (DUF1656) JH254_01715 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JH254_01715 PF00529 HlyD membrane-fusion protein of T1SS JH254_01720 PF04632 Fusaric acid resistance protein family JH254_01725 PF01751 Toprim domain JH254_01725 PF00204 DNA gyrase B JH254_01725 PF00986 DNA gyrase B subunit, carboxyl terminus JH254_01725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_01730 PF03989 DNA gyrase C-terminal domain, beta-propeller JH254_01730 PF00521 DNA gyrase/topoisomerase IV, subunit A JH254_01740 PF00521 DNA gyrase/topoisomerase IV, subunit A JH254_01740 PF03989 DNA gyrase C-terminal domain, beta-propeller JH254_01780 PF00684 DnaJ central domain JH254_01780 PF01556 DnaJ C terminal domain JH254_01780 PF00226 DnaJ domain JH254_01790 PF00578 AhpC/TSA family JH254_01810 PF01553 Acyltransferase JH254_01815 PF04012 PspA/IM30 family JH254_01830 PF01541 GIY-YIG catalytic domain JH254_01835 PF00892 EamA-like transporter family JH254_01840 PF03167 Uracil DNA glycosylase superfamily JH254_01850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_01850 PF03466 LysR substrate binding domain JH254_01855 PF00950 ABC 3 transport family JH254_01860 PF00005 ABC transporter JH254_01865 PF01297 Zinc-uptake complex component A periplasmic JH254_01885 PF01476 LysM domain JH254_01885 PF01551 Peptidase family M23 JH254_01885 PF08525 Opacity-associated protein A N-terminal motif JH254_01890 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JH254_01895 PF04222 Protein of unknown function (DUF416) JH254_01920 PF00892 EamA-like transporter family JH254_01925 PF01037 Lrp/AsnC ligand binding domain JH254_01930 PF14602 Hexapeptide repeat of succinyl-transferase JH254_01930 PF12464 Maltose acetyltransferase JH254_01935 PF00128 Alpha amylase, catalytic domain JH254_01935 PF11941 Domain of unknown function (DUF3459) JH254_01940 PF02378 Phosphotransferase system, EIIC JH254_01940 PF00367 phosphotransferase system, EIIB JH254_01945 PF00356 Bacterial regulatory proteins, lacI family JH254_01955 PF01238 Phosphomannose isomerase type I JH254_01960 PF02378 Phosphotransferase system, EIIC JH254_01965 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JH254_01970 PF02378 Phosphotransferase system, EIIC JH254_01975 PF00232 Glycosyl hydrolase family 1 JH254_01980 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit JH254_01985 PF00480 ROK family JH254_01990 PF02264 LamB porin JH254_02000 PF03422 Carbohydrate binding module (family 6) JH254_02000 PF13199 Glycosyl hydrolase family 66 JH254_02000 PF16990 Carbohydrate binding module (family 35) JH254_02005 PF02013 Cellulose or protein binding domain JH254_02005 PF00150 Cellulase (glycosyl hydrolase family 5) JH254_02010 PF00356 Bacterial regulatory proteins, lacI family JH254_02020 PF00710 Asparaginase, N-terminal JH254_02020 PF17763 Glutaminase/Asparaginase C-terminal domain JH254_02035 PF02142 MGS-like domain JH254_02040 PF00210 Ferritin-like domain JH254_02055 PF17176 tRNA-binding domain JH254_02055 PF05127 Helicase JH254_02055 PF13718 GNAT acetyltransferase 2 JH254_02055 PF08351 Domain of unknown function (DUF1726) JH254_02060 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JH254_02060 PF02790 Cytochrome C oxidase subunit II, transmembrane domain JH254_02065 PF00115 Cytochrome C and Quinol oxidase polypeptide I JH254_02070 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 JH254_02075 PF00510 Cytochrome c oxidase subunit III JH254_02100 PF01040 UbiA prenyltransferase family JH254_02110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_02110 PF03466 LysR substrate binding domain JH254_02115 PF03553 Na+/H+ antiporter family JH254_02155 PF08323 Starch synthase catalytic domain JH254_02155 PF00534 Glycosyl transferases group 1 JH254_02160 PF00483 Nucleotidyl transferase JH254_02165 PF08468 Methyltransferase small domain N-terminal JH254_02165 PF05175 Methyltransferase small domain JH254_02170 PF00701 Dihydrodipicolinate synthetase family JH254_02175 PF00563 EAL domain JH254_02175 PF00360 Phytochrome region JH254_02175 PF00990 Diguanylate cyclase, GGDEF domain JH254_02175 PF01590 GAF domain JH254_02180 PF13419 Haloacid dehalogenase-like hydrolase JH254_02185 PF17209 Hfq protein JH254_02190 PF04403 Paraquat-inducible protein A JH254_02195 PF02470 MlaD protein JH254_02200 PF03886 ABC-type transport auxiliary lipoprotein component JH254_02205 PF01389 OmpA-like transmembrane domain JH254_02205 PF00691 OmpA family JH254_02210 PF00657 GDSL-like Lipase/Acylhydrolase JH254_02220 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain JH254_02220 PF01464 Transglycosylase SLT domain JH254_02225 PF04362 Bacterial Fe(2+) trafficking JH254_02230 PF10576 Iron-sulfur binding domain of endonuclease III JH254_02230 PF00633 Helix-hairpin-helix motif JH254_02230 PF00730 HhH-GPD superfamily base excision DNA repair protein JH254_02230 PF14815 NUDIX domain JH254_02235 PF16537 Type II secretion system protein B JH254_02240 PF13401 AAA domain JH254_02240 PF01471 Putative peptidoglycan binding domain JH254_02245 PF01743 Poly A polymerase head domain JH254_02245 PF01966 HD domain JH254_02245 PF12627 Probable RNA and SrmB- binding site of polymerase A JH254_02250 PF01384 Phosphate transporter family JH254_02255 PF01865 Protein of unknown function DUF47 JH254_02260 PF01928 CYTH domain JH254_02265 PF05433 Glycine zipper 2TM domain JH254_02275 PF00557 Metallopeptidase family M24 JH254_02275 PF01321 Creatinase/Prolidase N-terminal domain JH254_02280 PF00392 Bacterial regulatory proteins, gntR family JH254_02285 PF01293 Phosphoenolpyruvate carboxykinase JH254_02290 PF01430 Hsp33 protein JH254_02295 PF01479 S4 domain JH254_02300 PF11356 Type II secretion system protein C JH254_02305 PF00263 Bacterial type II and III secretion system protein JH254_02305 PF03958 Bacterial type II/III secretion system short domain JH254_02310 PF00437 Type II/IV secretion system protein JH254_02315 PF00482 Type II secretion system (T2SS), protein F JH254_02320 PF07963 Prokaryotic N-terminal methylation motif JH254_02320 PF08334 Type II secretion system (T2SS), protein G JH254_02325 PF12019 Type II transport protein GspH JH254_02325 PF07963 Prokaryotic N-terminal methylation motif JH254_02330 PF02501 Type II secretion system (T2SS), protein I JH254_02330 PF07963 Prokaryotic N-terminal methylation motif JH254_02335 PF07963 Prokaryotic N-terminal methylation motif JH254_02335 PF11612 Type II secretion system (T2SS), protein J JH254_02345 PF03934 Type II secretion system (T2SS), protein K JH254_02350 PF05134 Type II secretion system (T2SS), protein L JH254_02350 PF12693 GspL periplasmic domain JH254_02355 PF04612 Type II secretion system (T2SS), protein M JH254_02360 PF01203 Type II secretion system (T2SS), protein N JH254_02365 PF00196 Bacterial regulatory proteins, luxR family JH254_02370 PF00579 tRNA synthetases class I (W and Y) JH254_02370 PF01479 S4 domain JH254_02375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_02375 PF03466 LysR substrate binding domain JH254_02380 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JH254_02385 PF13419 Haloacid dehalogenase-like hydrolase JH254_02390 PF00293 NUDIX domain JH254_02395 PF00459 Inositol monophosphatase family JH254_02400 PF03222 Tryptophan/tyrosine permease family JH254_02405 PF01588 Putative tRNA binding domain JH254_02415 PF01340 Met Apo-repressor, MetJ JH254_02420 PF01053 Cys/Met metabolism PLP-dependent enzyme JH254_02425 PF00696 Amino acid kinase family JH254_02425 PF00742 Homoserine dehydrogenase JH254_02425 PF03447 Homoserine dehydrogenase, NAD binding domain JH254_02430 PF04172 LrgB-like family JH254_02435 PF03788 LrgA family JH254_02440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_02440 PF03466 LysR substrate binding domain JH254_02455 PF00155 Aminotransferase class I and II JH254_02455 PF00392 Bacterial regulatory proteins, gntR family JH254_02475 PF04073 Aminoacyl-tRNA editing domain JH254_02480 PF08447 PAS fold JH254_02480 PF05231 MASE1 JH254_02480 PF00563 EAL domain JH254_02480 PF08448 PAS fold JH254_02480 PF00990 Diguanylate cyclase, GGDEF domain JH254_02480 PF13426 PAS domain JH254_02485 PF00311 Phosphoenolpyruvate carboxylase JH254_02490 PF07687 Peptidase dimerisation domain JH254_02490 PF01546 Peptidase family M20/M25/M40 JH254_02495 PF01118 Semialdehyde dehydrogenase, NAD binding domain JH254_02495 PF02774 Semialdehyde dehydrogenase, dimerisation domain JH254_02500 PF00696 Amino acid kinase family JH254_02505 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JH254_02505 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JH254_02510 PF00764 Arginosuccinate synthase JH254_02515 PF00206 Lyase JH254_02515 PF14698 Argininosuccinate lyase C-terminal JH254_02520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_02520 PF03466 LysR substrate binding domain JH254_02530 PF14552 Tautomerase enzyme JH254_02560 PF12464 Maltose acetyltransferase JH254_02560 PF14602 Hexapeptide repeat of succinyl-transferase JH254_02565 PF13194 Domain of unknown function (DUF4010) JH254_02570 PF00497 Bacterial extracellular solute-binding proteins, family 3 JH254_02575 PF00005 ABC transporter JH254_02580 PF00528 Binding-protein-dependent transport system inner membrane component JH254_02585 PF00528 Binding-protein-dependent transport system inner membrane component JH254_02595 PF00326 Prolyl oligopeptidase family JH254_02595 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JH254_02610 PF08335 GlnD PII-uridylyltransferase JH254_02610 PF03710 Glutamate-ammonia ligase adenylyltransferase JH254_02620 PF02743 Cache domain JH254_02620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JH254_02620 PF00672 HAMP domain JH254_02625 PF00520 Ion transport protein JH254_02625 PF00027 Cyclic nucleotide-binding domain JH254_02630 PF08239 Bacterial SH3 domain JH254_02635 PF00293 NUDIX domain JH254_02635 PF09297 NADH pyrophosphatase zinc ribbon domain JH254_02640 PF01208 Uroporphyrinogen decarboxylase (URO-D) JH254_02645 PF00480 ROK family JH254_02650 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JH254_02650 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JH254_02655 PF00162 Phosphoglycerate kinase JH254_02660 PF01116 Fructose-bisphosphate aldolase class-II JH254_02665 PF01266 FAD dependent oxidoreductase JH254_02670 PF01609 Transposase DDE domain JH254_02670 PF13808 DDE_Tnp_1-associated JH254_02675 PF11842 Domain of unknown function (DUF3362) JH254_02675 PF04055 Radical SAM superfamily JH254_02675 PF08497 Radical SAM N-terminal JH254_02680 PF00873 AcrB/AcrD/AcrF family JH254_02690 PF17158 Membrane-associated sensor, integral membrane domain JH254_02690 PF00990 Diguanylate cyclase, GGDEF domain JH254_02695 PF01734 Patatin-like phospholipase JH254_02700 PF00209 Sodium:neurotransmitter symporter family JH254_02715 PF00691 OmpA family JH254_02715 PF01389 OmpA-like transmembrane domain JH254_02720 PF00691 OmpA family JH254_02720 PF01389 OmpA-like transmembrane domain JH254_02725 PF00691 OmpA family JH254_02725 PF01389 OmpA-like transmembrane domain JH254_02730 PF00390 Malic enzyme, N-terminal domain JH254_02730 PF03949 Malic enzyme, NAD binding domain JH254_02735 PF12833 Helix-turn-helix domain JH254_02740 PF01554 MatE JH254_02745 PF10692 Protein of unknown function (DUF2498) JH254_02750 PF00072 Response regulator receiver domain JH254_02750 PF00990 Diguanylate cyclase, GGDEF domain JH254_02755 PF00860 Permease family JH254_02765 PF01235 Sodium:alanine symporter family JH254_02770 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JH254_02770 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JH254_02775 PF01699 Sodium/calcium exchanger protein JH254_02780 PF08534 Redoxin JH254_02785 PF00293 NUDIX domain JH254_02795 PF00005 ABC transporter JH254_02800 PF00528 Binding-protein-dependent transport system inner membrane component JH254_02805 PF00528 Binding-protein-dependent transport system inner membrane component JH254_02810 PF00497 Bacterial extracellular solute-binding proteins, family 3 JH254_02825 PF00005 ABC transporter JH254_02830 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JH254_02830 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JH254_02850 PF03932 CutC family JH254_02855 PF00480 ROK family JH254_02865 PF13808 DDE_Tnp_1-associated JH254_02865 PF01609 Transposase DDE domain JH254_02875 PF12849 PBP superfamily domain JH254_02880 PF00512 His Kinase A (phospho-acceptor) domain JH254_02880 PF11808 Phosphate regulon sensor protein PhoR JH254_02880 PF00989 PAS fold JH254_02880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_02885 PF00072 Response regulator receiver domain JH254_02885 PF00486 Transcriptional regulatory protein, C terminal JH254_02890 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JH254_02895 PF00990 Diguanylate cyclase, GGDEF domain JH254_02895 PF17158 Membrane-associated sensor, integral membrane domain JH254_02900 PF00158 Sigma-54 interaction domain JH254_02900 PF01590 GAF domain JH254_02900 PF02954 Bacterial regulatory protein, Fis family JH254_02905 PF00171 Aldehyde dehydrogenase family JH254_02915 PF00892 EamA-like transporter family JH254_02925 PF00248 Aldo/keto reductase family JH254_02935 PF00072 Response regulator receiver domain JH254_02935 PF12431 Transcriptional regulator JH254_02940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_02940 PF17203 Single cache domain 3 JH254_02940 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JH254_02940 PF00989 PAS fold JH254_02945 PF01047 MarR family JH254_02950 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JH254_02950 PF00529 HlyD membrane-fusion protein of T1SS JH254_02970 PF01679 Proteolipid membrane potential modulator JH254_02980 PF03477 ATP cone domain JH254_02980 PF13597 Anaerobic ribonucleoside-triphosphate reductase JH254_02990 PF00533 BRCA1 C Terminus (BRCT) domain JH254_02990 PF01653 NAD-dependent DNA ligase adenylation domain JH254_02990 PF03120 NAD-dependent DNA ligase OB-fold domain JH254_02990 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JH254_02990 PF12826 Helix-hairpin-helix motif JH254_02995 PF04354 ZipA, C-terminal FtsZ-binding domain JH254_03000 PF02463 RecF/RecN/SMC N terminal domain JH254_03000 PF06470 SMC proteins Flexible Hinge Domain JH254_03010 PF03458 UPF0126 domain JH254_03020 PF05951 Bacterial protein of unknown function (DUF882) JH254_03025 PF01471 Putative peptidoglycan binding domain JH254_03025 PF03734 L,D-transpeptidase catalytic domain JH254_03040 PF00535 Glycosyl transferase family 2 JH254_03055 PF00128 Alpha amylase, catalytic domain JH254_03065 PF00196 Bacterial regulatory proteins, luxR family JH254_03065 PF00072 Response regulator receiver domain JH254_03085 PF02254 TrkA-N domain JH254_03085 PF00999 Sodium/hydrogen exchanger family JH254_03085 PF02080 TrkA-C domain JH254_03090 PF00990 Diguanylate cyclase, GGDEF domain JH254_03095 PF09179 TilS substrate binding domain JH254_03095 PF01171 PP-loop family JH254_03095 PF11734 TilS substrate C-terminal domain JH254_03100 PF05649 Peptidase family M13 JH254_03100 PF01431 Peptidase family M13 JH254_03110 PF16326 ABC transporter C-terminal domain JH254_03110 PF12848 ABC transporter JH254_03110 PF00005 ABC transporter JH254_03120 PF13520 Amino acid permease JH254_03130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_03130 PF03466 LysR substrate binding domain JH254_03140 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JH254_03145 PF07733 Bacterial DNA polymerase III alpha NTPase domain JH254_03145 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JH254_03145 PF02811 PHP domain JH254_03145 PF14579 Helix-hairpin-helix motif JH254_03145 PF01336 OB-fold nucleic acid binding domain JH254_03150 PF01351 Ribonuclease HII JH254_03155 PF02684 Lipid-A-disaccharide synthetase JH254_03160 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 JH254_03160 PF00132 Bacterial transferase hexapeptide (six repeats) JH254_03165 PF07977 FabA-like domain JH254_03170 PF00132 Bacterial transferase hexapeptide (six repeats) JH254_03170 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD JH254_03175 PF03938 Outer membrane protein (OmpH-like) JH254_03180 PF01103 Surface antigen JH254_03180 PF07244 Surface antigen variable number repeat JH254_03185 PF02163 Peptidase family M50 JH254_03185 PF17820 PDZ domain JH254_03190 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JH254_03190 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JH254_03190 PF13288 DXP reductoisomerase C-terminal domain JH254_03200 PF01255 Putative undecaprenyl diphosphate synthase JH254_03205 PF01765 Ribosome recycling factor JH254_03210 PF00696 Amino acid kinase family JH254_03215 PF00889 Elongation factor TS JH254_03220 PF00318 Ribosomal protein S2 JH254_03225 PF00557 Metallopeptidase family M24 JH254_03230 PF01966 HD domain JH254_03230 PF08335 GlnD PII-uridylyltransferase JH254_03230 PF01842 ACT domain JH254_03230 PF01909 Nucleotidyltransferase domain JH254_03235 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal JH254_03235 PF14602 Hexapeptide repeat of succinyl-transferase JH254_03235 PF00132 Bacterial transferase hexapeptide (six repeats) JH254_03240 PF11944 Protein of unknown function (DUF3461) JH254_03245 PF00367 phosphotransferase system, EIIB JH254_03245 PF02378 Phosphotransferase system, EIIC JH254_03250 PF07148 Maltose operon periplasmic protein precursor (MalM) JH254_03255 PF02264 LamB porin JH254_03260 PF00258 Flavodoxin JH254_03265 PF00849 RNA pseudouridylate synthase JH254_03270 PF04287 tRNA pseudouridine synthase C JH254_03295 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) JH254_03300 PF07348 Syd protein (SUKH-2) JH254_03305 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term JH254_03305 PF14489 QueF-like protein JH254_03315 PF00990 Diguanylate cyclase, GGDEF domain JH254_03320 PF11892 Domain of unknown function (DUF3412) JH254_03320 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases JH254_03320 PF03641 Possible lysine decarboxylase JH254_03325 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JH254_03325 PF01367 5'-3' exonuclease, C-terminal SAM fold JH254_03330 PF18324 Hypothetical protein TT1725 JH254_03330 PF00180 Isocitrate/isopropylmalate dehydrogenase JH254_03340 PF18125 RlmM ferredoxin-like domain JH254_03340 PF01728 FtsJ-like methyltransferase JH254_03345 PF04241 Protein of unknown function (DUF423) JH254_03355 PF03466 LysR substrate binding domain JH254_03355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_03360 PF00672 HAMP domain JH254_03360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JH254_03365 PF00817 impB/mucB/samB family JH254_03365 PF11799 impB/mucB/samB family C-terminal domain JH254_03365 PF11798 IMS family HHH motif JH254_03380 PF02424 ApbE family JH254_03385 PF00175 Oxidoreductase NAD-binding domain JH254_03385 PF00970 Oxidoreductase FAD-binding domain JH254_03385 PF00111 2Fe-2S iron-sulfur cluster binding domain JH254_03390 PF02508 Rnf-Nqr subunit, membrane protein JH254_03395 PF02508 Rnf-Nqr subunit, membrane protein JH254_03400 PF04205 FMN-binding domain JH254_03405 PF03116 NQR2, RnfD, RnfE family JH254_03410 PF11973 NQRA C-terminal domain JH254_03410 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) JH254_03415 PF01722 BolA-like protein JH254_03420 PF05175 Methyltransferase small domain JH254_03430 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JH254_03440 PF07690 Major Facilitator Superfamily JH254_03445 PF03502 Nucleoside-specific channel-forming protein, Tsx JH254_03450 PF04461 Protein of unknown function (DUF520) JH254_03455 PF08546 Ketopantoate reductase PanE/ApbA C terminal JH254_03455 PF02558 Ketopantoate reductase PanE/ApbA JH254_03460 PF01965 DJ-1/PfpI family JH254_03505 PF01177 Asp/Glu/Hydantoin racemase JH254_03510 PF00593 TonB dependent receptor JH254_03510 PF07715 TonB-dependent Receptor Plug Domain JH254_03515 PF00731 AIR carboxylase JH254_03520 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain JH254_03520 PF02222 ATP-grasp domain JH254_03525 PF07690 Major Facilitator Superfamily JH254_03530 PF04397 LytTr DNA-binding domain JH254_03530 PF00072 Response regulator receiver domain JH254_03535 PF06580 Histidine kinase JH254_03535 PF07694 5TMR of 5TMR-LYT JH254_03535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_03560 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JH254_03560 PF12833 Helix-turn-helix domain JH254_03565 PF01609 Transposase DDE domain JH254_03565 PF13808 DDE_Tnp_1-associated JH254_03575 PF00072 Response regulator receiver domain JH254_03575 PF00196 Bacterial regulatory proteins, luxR family JH254_03580 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term JH254_03580 PF07730 Histidine kinase JH254_03580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_03580 PF00672 HAMP domain JH254_03585 PF04055 Radical SAM superfamily JH254_03585 PF06463 Molybdenum Cofactor Synthesis C JH254_03590 PF13187 4Fe-4S dicluster domain JH254_03590 PF12800 4Fe-4S binding domain JH254_03590 PF00037 4Fe-4S binding domain JH254_03600 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JH254_03600 PF00384 Molybdopterin oxidoreductase JH254_03600 PF01568 Molydopterin dinucleotide binding domain JH254_03600 PF10518 TAT (twin-arginine translocation) pathway signal sequence JH254_03605 PF12800 4Fe-4S binding domain JH254_03605 PF12838 4Fe-4S dicluster domain JH254_03610 PF12801 4Fe-4S binding domain JH254_03610 PF13237 4Fe-4S dicluster domain JH254_03615 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) JH254_03620 PF03264 NapC/NirT cytochrome c family, N-terminal region JH254_03625 PF00994 Probable molybdopterin binding domain JH254_03630 PF01967 MoaC family JH254_03635 PF02597 ThiS family JH254_03640 PF02391 MoaE protein JH254_03650 PF00528 Binding-protein-dependent transport system inner membrane component JH254_03655 PF00005 ABC transporter JH254_03655 PF03459 TOBE domain JH254_03660 PF12697 Alpha/beta hydrolase family JH254_03665 PF00899 ThiF family JH254_03670 PF03453 MoeA N-terminal region (domain I and II) JH254_03670 PF00994 Probable molybdopterin binding domain JH254_03670 PF03454 MoeA C-terminal region (domain IV) JH254_03675 PF01227 GTP cyclohydrolase I JH254_03680 PF00672 HAMP domain JH254_03680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JH254_03680 PF17200 Single Cache domain 2 JH254_03685 PF01268 Formate--tetrahydrofolate ligase JH254_03695 PF03466 LysR substrate binding domain JH254_03695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_03700 PF04264 YceI-like domain JH254_03710 PF05221 S-adenosyl-L-homocysteine hydrolase JH254_03710 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain JH254_03725 PF01546 Peptidase family M20/M25/M40 JH254_03725 PF07687 Peptidase dimerisation domain JH254_03730 PF17944 Arginine decarboxylase C-terminal helical extension JH254_03730 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JH254_03730 PF17810 Arginine decarboxylase helical bundle domain JH254_03745 PF00563 EAL domain JH254_03745 PF03707 Bacterial signalling protein N terminal repeat JH254_03745 PF00990 Diguanylate cyclase, GGDEF domain JH254_03750 PF00300 Histidine phosphatase superfamily (branch 1) JH254_03755 PF04851 Type III restriction enzyme, res subunit JH254_03755 PF00271 Helicase conserved C-terminal domain JH254_03775 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JH254_03775 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JH254_03780 PF01479 S4 domain JH254_03780 PF00849 RNA pseudouridylate synthase JH254_03785 PF07690 Major Facilitator Superfamily JH254_03795 PF03466 LysR substrate binding domain JH254_03795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_03805 PF10689 Protein of unknown function (DUF2496) JH254_03815 PF04391 Protein of unknown function (DUF533) JH254_03825 PF00392 Bacterial regulatory proteins, gntR family JH254_03825 PF00155 Aminotransferase class I and II JH254_03830 PF01654 Cytochrome bd terminal oxidase subunit I JH254_03835 PF02322 Cytochrome bd terminal oxidase subunit II JH254_03845 PF07690 Major Facilitator Superfamily JH254_03850 PF00248 Aldo/keto reductase family JH254_03870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_03870 PF03466 LysR substrate binding domain JH254_03875 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JH254_03875 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JH254_03880 PF00230 Major intrinsic protein JH254_03885 PF07690 Major Facilitator Superfamily JH254_03890 PF08220 DeoR-like helix-turn-helix domain JH254_03890 PF00455 DeoR C terminal sensor domain JH254_03895 PF16901 C-terminal domain of alpha-glycerophosphate oxidase JH254_03895 PF01266 FAD dependent oxidoreductase JH254_03900 PF03009 Glycerophosphoryl diester phosphodiesterase family JH254_03905 PF00793 DAHP synthetase I family JH254_03910 PF02153 Prephenate dehydrogenase JH254_03910 PF01817 Chorismate mutase type II JH254_03915 PF03466 LysR substrate binding domain JH254_03915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_03920 PF04219 Protein of unknown function, DUF JH254_03925 PF03974 Ecotin JH254_03945 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JH254_03945 PF00326 Prolyl oligopeptidase family JH254_03950 PF07715 TonB-dependent Receptor Plug Domain JH254_03950 PF00593 TonB dependent receptor JH254_03955 PF11893 Domain of unknown function (DUF3413) JH254_03955 PF00884 Sulfatase JH254_03960 PF07208 Protein of unknown function (DUF1414) JH254_03965 PF04245 37-kD nucleoid-associated bacterial protein JH254_03970 PF01547 Bacterial extracellular solute-binding protein JH254_03975 PF14785 Maltose transport system permease protein MalF P2 domain JH254_03975 PF00528 Binding-protein-dependent transport system inner membrane component JH254_03980 PF00528 Binding-protein-dependent transport system inner membrane component JH254_03985 PF08402 TOBE domain JH254_03985 PF00005 ABC transporter JH254_03990 PF03976 Polyphosphate kinase 2 (PPK2) JH254_03995 PF00561 alpha/beta hydrolase fold JH254_04005 PF01594 AI-2E family transporter JH254_04010 PF01206 Sulfurtransferase TusA JH254_04015 PF13181 Tetratricopeptide repeat JH254_04015 PF01435 Peptidase family M48 JH254_04020 PF00578 AhpC/TSA family JH254_04025 PF03960 ArsC family JH254_04040 PF04336 Acyl carrier protein phosphodiesterase JH254_04050 PF00497 Bacterial extracellular solute-binding proteins, family 3 JH254_04055 PF01979 Amidohydrolase family JH254_04060 PF03956 Lysine exporter LysO JH254_04065 PF00005 ABC transporter JH254_04070 PF00497 Bacterial extracellular solute-binding proteins, family 3 JH254_04075 PF00528 Binding-protein-dependent transport system inner membrane component JH254_04080 PF00528 Binding-protein-dependent transport system inner membrane component JH254_04090 PF04055 Radical SAM superfamily JH254_04095 PF00990 Diguanylate cyclase, GGDEF domain JH254_04095 PF03707 Bacterial signalling protein N terminal repeat JH254_04095 PF00563 EAL domain JH254_04100 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JH254_04100 PF07992 Pyridine nucleotide-disulphide oxidoreductase JH254_04115 PF00529 HlyD membrane-fusion protein of T1SS JH254_04115 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JH254_04120 PF02321 Outer membrane efflux protein JH254_04125 PF01594 AI-2E family transporter JH254_04130 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain JH254_04130 PF07678 A-macroglobulin TED domain JH254_04130 PF01835 MG2 domain JH254_04130 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain JH254_04130 PF17962 Bacterial macroglobulin domain 6 JH254_04130 PF07703 Alpha-2-macroglobulin bait region domain JH254_04130 PF00207 Alpha-2-macroglobulin family JH254_04130 PF11974 Bacterial alpha-2-macroglobulin MG3 domain JH254_04130 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain JH254_04135 PF00905 Penicillin binding protein transpeptidase domain JH254_04135 PF00912 Transglycosylase JH254_04135 PF06832 Penicillin-Binding Protein C-terminus Family JH254_04145 PF02926 THUMP domain JH254_04145 PF02568 Thiamine biosynthesis protein (ThiI) JH254_04150 PF13006 Insertion element 4 transposase N-terminal JH254_04150 PF01609 Transposase DDE domain JH254_04155 PF00512 His Kinase A (phospho-acceptor) domain JH254_04155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_04155 PF08521 Two-component sensor kinase N-terminal JH254_04160 PF00486 Transcriptional regulatory protein, C terminal JH254_04160 PF00072 Response regulator receiver domain JH254_04170 PF00106 short chain dehydrogenase JH254_04180 PF00501 AMP-binding enzyme JH254_04195 PF06224 Winged helix DNA-binding domain JH254_04210 PF02313 Fumarate reductase subunit D JH254_04215 PF02300 Fumarate reductase subunit C JH254_04220 PF13085 2Fe-2S iron-sulfur cluster binding domain JH254_04220 PF13183 4Fe-4S dicluster domain JH254_04225 PF00890 FAD binding domain JH254_04225 PF02910 Fumarate reductase flavoprotein C-term JH254_04230 PF02743 Cache domain JH254_04230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JH254_04230 PF00672 HAMP domain JH254_04235 PF03009 Glycerophosphoryl diester phosphodiesterase family JH254_04240 PF00924 Mechanosensitive ion channel JH254_04240 PF12795 Mechanosensitive ion channel porin domain JH254_04240 PF12794 Mechanosensitive ion channel inner membrane domain 1 JH254_04250 PF01551 Peptidase family M23 JH254_04250 PF01476 LysM domain JH254_04250 PF08525 Opacity-associated protein A N-terminal motif JH254_04265 PF03466 LysR substrate binding domain JH254_04265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_04280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_04280 PF03466 LysR substrate binding domain JH254_04285 PF00905 Penicillin binding protein transpeptidase domain JH254_04285 PF00912 Transglycosylase JH254_04285 PF17092 Penicillin-binding protein OB-like domain JH254_04290 PF11104 Type IV pilus assembly protein PilM; JH254_04300 PF04350 Pilus assembly protein, PilO JH254_04310 PF11741 AMIN domain JH254_04310 PF03958 Bacterial type II/III secretion system short domain JH254_04310 PF07660 Secretin and TonB N terminus short domain JH254_04310 PF00263 Bacterial type II and III secretion system protein JH254_04315 PF01202 Shikimate kinase JH254_04320 PF01761 3-dehydroquinate synthase JH254_04325 PF05036 Sporulation related domain JH254_04330 PF02086 D12 class N6 adenine-specific DNA methyltransferase JH254_04335 PF00834 Ribulose-phosphate 3 epimerase family JH254_04340 PF13419 Haloacid dehalogenase-like hydrolase JH254_04345 PF00579 tRNA synthetases class I (W and Y) JH254_04355 PF00117 Glutamine amidotransferase class-I JH254_04360 PF00202 Aminotransferase class-III JH254_04365 PF04958 Arginine N-succinyltransferase beta subunit JH254_04370 PF00171 Aldehyde dehydrogenase family JH254_04385 PF13419 Haloacid dehalogenase-like hydrolase JH254_04390 PF07690 Major Facilitator Superfamily JH254_04400 PF07859 alpha/beta hydrolase fold JH254_04405 PF04266 ASCH domain JH254_04410 PF03600 Citrate transporter JH254_04410 PF02080 TrkA-C domain JH254_04420 PF01348 Type II intron maturase JH254_04420 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JH254_04425 PF06029 AlkA N-terminal domain JH254_04425 PF12833 Helix-turn-helix domain JH254_04425 PF02805 Metal binding domain of Ada JH254_04425 PF00730 HhH-GPD superfamily base excision DNA repair protein JH254_04430 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JH254_04430 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JH254_04440 PF06906 Protein of unknown function (DUF1272) JH254_04450 PF01136 Peptidase family U32 JH254_04450 PF12392 Collagenase JH254_04455 PF01810 LysE type translocator JH254_04460 PF03466 LysR substrate binding domain JH254_04460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_04465 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JH254_04465 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JH254_04490 PF00989 PAS fold JH254_04490 PF00990 Diguanylate cyclase, GGDEF domain JH254_04490 PF01590 GAF domain JH254_04490 PF00563 EAL domain JH254_04500 PF01568 Molydopterin dinucleotide binding domain JH254_04500 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JH254_04500 PF00384 Molybdopterin oxidoreductase JH254_04505 PF03916 Polysulphide reductase, NrfD JH254_04510 PF13247 4Fe-4S dicluster domain JH254_04515 PF00989 PAS fold JH254_04515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_04515 PF00512 His Kinase A (phospho-acceptor) domain JH254_04520 PF00072 Response regulator receiver domain JH254_04520 PF00196 Bacterial regulatory proteins, luxR family JH254_04525 PF03575 Peptidase family S51 JH254_04530 PF07690 Major Facilitator Superfamily JH254_04535 PF00529 HlyD membrane-fusion protein of T1SS JH254_04535 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JH254_04545 PF00206 Lyase JH254_04545 PF10415 Fumarase C C-terminus JH254_04555 PF14850 DNA-binding domain of Proline dehydrogenase JH254_04555 PF00171 Aldehyde dehydrogenase family JH254_04555 PF01619 Proline dehydrogenase JH254_04555 PF18327 Proline utilization A proline dehydrogenase N-terminal domain JH254_04560 PF01168 Alanine racemase, N-terminal domain JH254_04560 PF00842 Alanine racemase, C-terminal domain JH254_04565 PF00772 DnaB-like helicase N terminal domain JH254_04565 PF03796 DnaB-like helicase C terminal domain JH254_04575 PF00149 Calcineurin-like phosphoesterase JH254_04575 PF02872 5'-nucleotidase, C-terminal domain JH254_04595 PF02954 Bacterial regulatory protein, Fis family JH254_04595 PF00072 Response regulator receiver domain JH254_04595 PF00158 Sigma-54 interaction domain JH254_04600 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JH254_04600 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JH254_04610 PF04102 SlyX JH254_04615 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JH254_04620 PF09526 Probable metal-binding protein (DUF2387) JH254_04630 PF00072 Response regulator receiver domain JH254_04630 PF01584 CheW-like domain JH254_04635 PF00561 alpha/beta hydrolase fold JH254_04640 PF00360 Phytochrome region JH254_04640 PF00563 EAL domain JH254_04640 PF01590 GAF domain JH254_04640 PF00990 Diguanylate cyclase, GGDEF domain JH254_04645 PF06794 Uncharacterised protein family (UPF0270) JH254_04650 PF00485 Phosphoribulokinase / Uridine kinase family JH254_04665 PF02566 OsmC-like protein JH254_04670 PF13545 Crp-like helix-turn-helix domain JH254_04670 PF00027 Cyclic nucleotide-binding domain JH254_04675 PF13847 Methyltransferase domain JH254_04680 PF00704 Glycosyl hydrolases family 18 JH254_04680 PF08329 Chitinase A, N-terminal domain JH254_04685 PF00512 His Kinase A (phospho-acceptor) domain JH254_04685 PF00989 PAS fold JH254_04685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_04690 PF12832 MFS_1 like family JH254_04695 PF07715 TonB-dependent Receptor Plug Domain JH254_04695 PF00593 TonB dependent receptor JH254_04715 PF01243 Pyridoxamine 5'-phosphate oxidase JH254_04720 PF06228 Haem utilisation ChuX/HutX JH254_04730 PF01032 FecCD transport family JH254_04735 PF00005 ABC transporter JH254_04745 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JH254_04745 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JH254_04745 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JH254_04750 PF01370 NAD dependent epimerase/dehydratase family JH254_04755 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase JH254_04765 PF00535 Glycosyl transferase family 2 JH254_04770 PF01464 Transglycosylase SLT domain JH254_04770 PF10145 Phage-related minor tail protein JH254_04770 PF01551 Peptidase family M23 JH254_04775 PF12848 ABC transporter JH254_04775 PF00005 ABC transporter JH254_04785 PF00860 Permease family JH254_04790 PF05099 Tellurite resistance protein TerB JH254_04790 PF00226 DnaJ domain JH254_04795 PF00483 Nucleotidyl transferase JH254_04800 PF01636 Phosphotransferase enzyme family JH254_04805 PF04453 LPS transport system D JH254_04805 PF03968 OstA-like protein JH254_04810 PF00639 PPIC-type PPIASE domain JH254_04810 PF09312 SurA N-terminal domain JH254_04815 PF04166 Pyridoxal phosphate biosynthetic protein PdxA JH254_04820 PF00398 Ribosomal RNA adenine dimethylase JH254_04825 PF04379 ApaG domain JH254_04830 PF00149 Calcineurin-like phosphoesterase JH254_04840 PF00296 Luciferase-like monooxygenase JH254_04850 PF07670 Nucleoside recognition JH254_04855 PF01018 GTP1/OBG JH254_04855 PF01926 50S ribosome-binding GTPase JH254_04860 PF01016 Ribosomal L27 protein JH254_04865 PF00829 Ribosomal prokaryotic L21 protein JH254_04870 PF00348 Polyprenyl synthetase JH254_04875 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) JH254_04880 PF01145 SPFH domain / Band 7 family JH254_04885 PF01145 SPFH domain / Band 7 family JH254_04885 PF12221 Bacterial membrane protein N terminal JH254_04890 PF16360 GTP-binding GTPase Middle Region JH254_04890 PF01926 50S ribosome-binding GTPase JH254_04890 PF13167 GTP-binding GTPase N-terminal JH254_04895 PF17209 Hfq protein JH254_04905 PF08676 MutL C terminal dimerisation domain JH254_04905 PF01119 DNA mismatch repair protein, C-terminal domain JH254_04910 PF01520 N-acetylmuramoyl-L-alanine amidase JH254_04915 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JH254_04920 PF03853 YjeF-related protein N-terminus JH254_04920 PF01256 Carbohydrate kinase JH254_04925 PF08331 Domain of unknown function (DUF1730) JH254_04930 PF00480 ROK family JH254_04940 PF00005 ABC transporter JH254_04940 PF09383 NIL domain JH254_04945 PF00528 Binding-protein-dependent transport system inner membrane component JH254_04950 PF03180 NLPA lipoprotein JH254_04955 PF02357 Transcription termination factor nusG JH254_04960 PF13426 PAS domain JH254_04960 PF08447 PAS fold JH254_04960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JH254_04965 PF00563 EAL domain JH254_04965 PF03707 Bacterial signalling protein N terminal repeat JH254_04965 PF00990 Diguanylate cyclase, GGDEF domain JH254_04970 PF00072 Response regulator receiver domain JH254_04970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_04970 PF09456 RcsC Alpha-Beta-Loop (ABL) JH254_04970 PF00512 His Kinase A (phospho-acceptor) domain JH254_04980 PF01966 HD domain JH254_04985 PF00989 PAS fold JH254_04985 PF01627 Hpt domain JH254_04985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_04985 PF18415 Histidine kinase receptor ArcB trans-membrane domain JH254_04985 PF00512 His Kinase A (phospho-acceptor) domain JH254_04985 PF00072 Response regulator receiver domain JH254_05005 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) JH254_05010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_05010 PF03466 LysR substrate binding domain JH254_05020 PF01259 SAICAR synthetase JH254_05025 PF06804 NlpB/DapX lipoprotein JH254_05030 PF00701 Dihydrodipicolinate synthetase family JH254_05035 PF01842 ACT domain JH254_05040 PF00578 AhpC/TSA family JH254_05045 PF03887 YfbU domain JH254_05050 PF04217 Protein of unknown function, DUF412 JH254_05055 PF00871 Acetokinase family JH254_05060 PF07085 DRTGG domain JH254_05060 PF01515 Phosphate acetyl/butaryl transferase JH254_05065 PF10369 Small subunit of acetolactate synthase JH254_05070 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JH254_05070 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JH254_05070 PF00205 Thiamine pyrophosphate enzyme, central domain JH254_05085 PF01569 PAP2 superfamily JH254_05095 PF00682 HMGL-like JH254_05095 PF08502 LeuA allosteric (dimerisation) domain JH254_05100 PF00180 Isocitrate/isopropylmalate dehydrogenase JH254_05105 PF00330 Aconitase family (aconitate hydratase) JH254_05110 PF00694 Aconitase C-terminal domain JH254_05130 PF00528 Binding-protein-dependent transport system inner membrane component JH254_05135 PF00005 ABC transporter JH254_05145 PF13638 PIN domain JH254_05145 PF02562 PhoH-like protein JH254_05185 PF02472 Biopolymer transport protein ExbD/TolR JH254_05190 PF01618 MotA/TolQ/ExbB proton channel family JH254_05195 PF01618 MotA/TolQ/ExbB proton channel family JH254_05205 PF00593 TonB dependent receptor JH254_05205 PF07715 TonB-dependent Receptor Plug Domain JH254_05210 PF00528 Binding-protein-dependent transport system inner membrane component JH254_05215 PF00528 Binding-protein-dependent transport system inner membrane component JH254_05215 PF12911 N-terminal TM domain of oligopeptide transport permease C JH254_05220 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JH254_05225 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JH254_05225 PF00005 ABC transporter JH254_05230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JH254_05230 PF00005 ABC transporter JH254_05235 PF07687 Peptidase dimerisation domain JH254_05235 PF01546 Peptidase family M20/M25/M40 JH254_05240 PF00156 Phosphoribosyl transferase domain JH254_05245 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) JH254_05250 PF07417 Sigma factor-binding transcriptional regulator Crl JH254_05255 PF00696 Amino acid kinase family JH254_05255 PF01472 PUA domain JH254_05260 PF00171 Aldehyde dehydrogenase family JH254_05270 PF00582 Universal stress protein family JH254_05285 PF04324 BFD-like [2Fe-2S] binding domain JH254_05285 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JH254_05285 PF01568 Molydopterin dinucleotide binding domain JH254_05285 PF00384 Molybdopterin oxidoreductase JH254_05290 PF10414 Sirohaem synthase dimerisation region JH254_05290 PF14824 Sirohaem biosynthesis protein central JH254_05290 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JH254_05300 PF00005 ABC transporter JH254_05305 PF00528 Binding-protein-dependent transport system inner membrane component JH254_05310 PF00005 ABC transporter JH254_05315 PF13806 Rieske-like [2Fe-2S] domain JH254_05315 PF07992 Pyridine nucleotide-disulphide oxidoreductase JH254_05315 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JH254_05315 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JH254_05315 PF18267 Rubredoxin NAD+ reductase C-terminal domain JH254_05315 PF04324 BFD-like [2Fe-2S] binding domain JH254_05320 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JH254_05320 PF07992 Pyridine nucleotide-disulphide oxidoreductase JH254_05320 PF13806 Rieske-like [2Fe-2S] domain JH254_05320 PF18267 Rubredoxin NAD+ reductase C-terminal domain JH254_05320 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JH254_05320 PF04324 BFD-like [2Fe-2S] binding domain JH254_05325 PF00294 pfkB family carbohydrate kinase JH254_05330 PF04227 Indigoidine synthase A like protein JH254_05335 PF00194 Eukaryotic-type carbonic anhydrase JH254_05350 PF00994 Probable molybdopterin binding domain JH254_05355 PF01609 Transposase DDE domain JH254_05365 PF06738 Putative threonine/serine exporter JH254_05370 PF12821 Threonine/Serine exporter, ThrE JH254_05375 PF00186 Dihydrofolate reductase JH254_05380 PF00571 CBS domain JH254_05380 PF00005 ABC transporter JH254_05385 PF00528 Binding-protein-dependent transport system inner membrane component JH254_05390 PF04069 Substrate binding domain of ABC-type glycine betaine transport system JH254_05395 PF01507 Phosphoadenosine phosphosulfate reductase family JH254_05400 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JH254_05400 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JH254_05405 PF00175 Oxidoreductase NAD-binding domain JH254_05405 PF00258 Flavodoxin JH254_05405 PF00667 FAD binding domain JH254_05410 PF02567 Phenazine biosynthesis-like protein JH254_05415 PF00152 tRNA synthetases class II (D, K and N) JH254_05415 PF01336 OB-fold nucleic acid binding domain JH254_05425 PF00672 HAMP domain JH254_05425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JH254_05425 PF02743 Cache domain JH254_05430 PF03616 Sodium/glutamate symporter JH254_05435 PF17763 Glutaminase/Asparaginase C-terminal domain JH254_05435 PF00710 Asparaginase, N-terminal JH254_05440 PF07023 Protein of unknown function (DUF1315) JH254_05445 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JH254_05445 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JH254_05460 PF01343 Peptidase family S49 JH254_05465 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JH254_05465 PF07992 Pyridine nucleotide-disulphide oxidoreductase JH254_05470 PF00881 Nitroreductase family JH254_05475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JH254_05475 PF00672 HAMP domain JH254_05475 PF02743 Cache domain JH254_05480 PF12464 Maltose acetyltransferase JH254_05480 PF00132 Bacterial transferase hexapeptide (six repeats) JH254_05490 PF08240 Alcohol dehydrogenase GroES-like domain JH254_05490 PF00107 Zinc-binding dehydrogenase JH254_05495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_05495 PF03466 LysR substrate binding domain JH254_05500 PF02378 Phosphotransferase system, EIIC JH254_05500 PF00367 phosphotransferase system, EIIB JH254_05500 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JH254_05505 PF00474 Sodium:solute symporter family JH254_05510 PF06196 Protein of unknown function (DUF997) JH254_05515 PF02785 Biotin carboxylase C-terminal domain JH254_05515 PF00289 Biotin carboxylase, N-terminal domain JH254_05515 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JH254_05520 PF00364 Biotin-requiring enzyme JH254_05525 PF01220 Dehydroquinase class II JH254_05530 PF13193 AMP-binding enzyme C-terminal domain JH254_05530 PF00501 AMP-binding enzyme JH254_05530 PF16177 Acetyl-coenzyme A synthetase N-terminus JH254_05535 PF03707 Bacterial signalling protein N terminal repeat JH254_05535 PF00990 Diguanylate cyclase, GGDEF domain JH254_05535 PF00563 EAL domain JH254_05545 PF02613 Nitrate reductase delta subunit JH254_05555 PF00464 Serine hydroxymethyltransferase JH254_05565 PF03477 ATP cone domain JH254_05570 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JH254_05570 PF01872 RibD C-terminal domain JH254_05575 PF00677 Lumazine binding domain JH254_05580 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JH254_05580 PF00925 GTP cyclohydrolase II JH254_05585 PF00885 6,7-dimethyl-8-ribityllumazine synthase JH254_05590 PF01029 NusB family JH254_05595 PF00586 AIR synthase related protein, N-terminal domain JH254_05595 PF02769 AIR synthase related protein, C-terminal domain JH254_05600 PF04608 Phosphatidylglycerophosphatase A JH254_05605 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JH254_05605 PF00005 ABC transporter JH254_05610 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JH254_05615 PF00528 Binding-protein-dependent transport system inner membrane component JH254_05620 PF00528 Binding-protein-dependent transport system inner membrane component JH254_05620 PF12911 N-terminal TM domain of oligopeptide transport permease C JH254_05625 PF02780 Transketolase, C-terminal domain JH254_05625 PF02779 Transketolase, pyrimidine binding domain JH254_05625 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JH254_05630 PF00348 Polyprenyl synthetase JH254_05635 PF02609 Exonuclease VII small subunit JH254_05640 PF01618 MotA/TolQ/ExbB proton channel family JH254_05645 PF00691 OmpA family JH254_05645 PF13677 Membrane MotB of proton-channel complex MotA/MotB JH254_05650 PF01272 Transcription elongation factor, GreA/GreB, C-term JH254_05650 PF03449 Transcription elongation factor, N-terminal JH254_05660 PF01985 CRS1 / YhbY (CRM) domain JH254_05665 PF01728 FtsJ-like methyltransferase JH254_05670 PF01434 Peptidase family M41 JH254_05670 PF06480 FtsH Extracellular JH254_05670 PF17862 AAA+ lid domain JH254_05670 PF00004 ATPase family associated with various cellular activities (AAA) JH254_05675 PF00809 Pterin binding enzyme JH254_05680 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JH254_05680 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JH254_05680 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JH254_05680 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JH254_05685 PF00121 Triosephosphate isomerase JH254_05690 PF03840 Preprotein translocase SecG subunit JH254_05705 PF02576 RimP N-terminal domain JH254_05705 PF17384 RimP C-terminal SH3 domain JH254_05710 PF13184 NusA-like KH domain JH254_05710 PF08529 NusA N-terminal domain JH254_05710 PF00575 S1 RNA binding domain JH254_05715 PF11987 Translation-initiation factor 2 JH254_05715 PF00009 Elongation factor Tu GTP binding domain JH254_05715 PF08364 Bacterial translation initiation factor IF-2 associated region JH254_05715 PF04760 Translation initiation factor IF-2, N-terminal region JH254_05720 PF02033 Ribosome-binding factor A JH254_05725 PF01509 TruB family pseudouridylate synthase (N terminal domain) JH254_05725 PF09157 Pseudouridine synthase II TruB, C-terminal JH254_05725 PF16198 tRNA pseudouridylate synthase B C-terminal domain JH254_05730 PF00312 Ribosomal protein S15 JH254_05735 PF01138 3' exoribonuclease family, domain 1 JH254_05735 PF00013 KH domain JH254_05735 PF00575 S1 RNA binding domain JH254_05735 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JH254_05735 PF03725 3' exoribonuclease family, domain 2 JH254_05740 PF07690 Major Facilitator Superfamily JH254_05745 PF02635 DsrE/DsrF-like family JH254_05750 PF06476 Protein of unknown function (DUF1090) JH254_05755 PF12838 4Fe-4S dicluster domain JH254_05760 PF01136 Peptidase family U32 JH254_05760 PF16325 Peptidase family U32 C-terminal domain JH254_05765 PF17969 L,D-transpeptidase C-terminal domain JH254_05765 PF03734 L,D-transpeptidase catalytic domain JH254_05775 PF01523 Putative modulator of DNA gyrase JH254_05780 PF01523 Putative modulator of DNA gyrase JH254_05785 PF00258 Flavodoxin JH254_05790 PF02899 Phage integrase, N-terminal SAM-like domain JH254_05790 PF00589 Phage integrase family JH254_05795 PF01741 Large-conductance mechanosensitive channel, MscL JH254_05805 PF17768 RecJ OB domain JH254_05805 PF02272 DHHA1 domain JH254_05805 PF01368 DHH family JH254_05810 PF13411 MerR HTH family regulatory protein JH254_05825 PF02508 Rnf-Nqr subunit, membrane protein JH254_05835 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family JH254_05835 PF04055 Radical SAM superfamily JH254_05840 PF03099 Biotin/lipoate A/B protein ligase family JH254_05845 PF04359 Protein of unknown function (DUF493) JH254_05850 PF00768 D-alanyl-D-alanine carboxypeptidase JH254_05850 PF07943 Penicillin-binding protein 5, C-terminal domain JH254_05855 PF03330 Lytic transglycolase JH254_05855 PF05036 Sporulation related domain JH254_05860 PF13406 Transglycosylase SLT domain JH254_05865 PF01098 Cell cycle protein JH254_05870 PF00905 Penicillin binding protein transpeptidase domain JH254_05870 PF03717 Penicillin-binding Protein dimerisation domain JH254_05875 PF02590 Predicted SPOUT methyltransferase JH254_05885 PF01467 Cytidylyltransferase-like JH254_05905 PF02903 Alpha amylase, N-terminal ig-like domain JH254_05905 PF00128 Alpha amylase, catalytic domain JH254_05920 PF00012 Hsp70 protein JH254_05925 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JH254_05925 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JH254_05930 PF05981 CreA protein JH254_05945 PF01258 Prokaryotic dksA/traR C4-type zinc finger JH254_05950 PF00120 Glutamine synthetase, catalytic domain JH254_05955 PF00202 Aminotransferase class-III JH254_05960 PF13416 Bacterial extracellular solute-binding protein JH254_05965 PF13416 Bacterial extracellular solute-binding protein JH254_05970 PF08402 TOBE domain JH254_05970 PF00005 ABC transporter JH254_05975 PF00528 Binding-protein-dependent transport system inner membrane component JH254_05980 PF00528 Binding-protein-dependent transport system inner membrane component JH254_05985 PF03473 MOSC domain JH254_05985 PF03475 3-alpha domain JH254_06000 PF03061 Thioesterase superfamily JH254_06005 PF00570 HRDC domain JH254_06005 PF09382 RQC domain JH254_06005 PF00270 DEAD/DEAH box helicase JH254_06005 PF00271 Helicase conserved C-terminal domain JH254_06005 PF16124 RecQ zinc-binding JH254_06010 PF00034 Cytochrome c JH254_06015 PF02696 Uncharacterized ACR, YdiU/UPF0061 family JH254_06025 PF02592 Putative vitamin uptake transporter JH254_06030 PF03737 Aldolase/RraA JH254_06035 PF01769 Divalent cation transporter JH254_06035 PF03448 MgtE intracellular N domain JH254_06035 PF00571 CBS domain JH254_06040 PF10414 Sirohaem synthase dimerisation region JH254_06040 PF14824 Sirohaem biosynthesis protein central JH254_06040 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JH254_06045 PF01226 Formate/nitrite transporter JH254_06050 PF13806 Rieske-like [2Fe-2S] domain JH254_06055 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JH254_06055 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JH254_06055 PF07992 Pyridine nucleotide-disulphide oxidoreductase JH254_06055 PF18267 Rubredoxin NAD+ reductase C-terminal domain JH254_06055 PF04324 BFD-like [2Fe-2S] binding domain JH254_06070 PF00005 ABC transporter JH254_06075 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JH254_06095 PF10431 C-terminal, D2-small domain, of ClpB protein JH254_06095 PF07724 AAA domain (Cdc48 subfamily) JH254_06095 PF00004 ATPase family associated with various cellular activities (AAA) JH254_06100 PF00227 Proteasome subunit JH254_06110 PF05746 DALR anticodon binding domain JH254_06110 PF00750 tRNA synthetases class I (R) JH254_06110 PF03485 Arginyl tRNA synthetase N terminal domain JH254_06120 PF04542 Sigma-70 region 2 JH254_06120 PF04545 Sigma-70, region 4 JH254_06125 PF12973 ChrR Cupin-like domain JH254_06130 PF02673 Bacitracin resistance protein BacA JH254_06135 PF00248 Aldo/keto reductase family JH254_06140 PF01263 Aldose 1-epimerase JH254_06145 PF10509 Galactokinase galactose-binding signature JH254_06145 PF00288 GHMP kinases N terminal domain JH254_06145 PF08544 GHMP kinases C terminal JH254_06150 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain JH254_06150 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain JH254_06155 PF16363 GDP-mannose 4,6 dehydratase JH254_06160 PF00356 Bacterial regulatory proteins, lacI family JH254_06165 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JH254_06165 PF02837 Glycosyl hydrolases family 2, sugar binding domain JH254_06165 PF16353 Domain of unknown function(DUF4981) JH254_06165 PF00703 Glycosyl hydrolases family 2 JH254_06165 PF02929 Beta galactosidase small chain JH254_06170 PF13407 Periplasmic binding protein domain JH254_06175 PF00005 ABC transporter JH254_06180 PF02653 Branched-chain amino acid transport system / permease component JH254_06185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JH254_06185 PF02743 Cache domain JH254_06185 PF00672 HAMP domain JH254_06200 PF00696 Amino acid kinase family JH254_06205 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JH254_06205 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JH254_06210 PF03606 C4-dicarboxylate anaerobic carrier JH254_06215 PF02863 Arginine repressor, C-terminal domain JH254_06215 PF01316 Arginine repressor, DNA binding domain JH254_06220 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain JH254_06220 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain JH254_06225 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JH254_06225 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JH254_06250 PF00672 HAMP domain JH254_06250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JH254_06250 PF02743 Cache domain JH254_06260 PF08212 Lipocalin-like domain JH254_06265 PF12833 Helix-turn-helix domain JH254_06265 PF06719 AraC-type transcriptional regulator N-terminus JH254_06270 PF00465 Iron-containing alcohol dehydrogenase JH254_06275 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch JH254_06275 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JH254_06275 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JH254_06280 PF02233 NAD(P) transhydrogenase beta subunit JH254_06285 PF13309 HTH domain JH254_06285 PF08348 YheO-like PAS domain JH254_06290 PF03313 Serine dehydratase alpha chain JH254_06295 PF13525 Outer membrane lipoprotein JH254_06300 PF00849 RNA pseudouridylate synthase JH254_06300 PF01479 S4 domain JH254_06305 PF02578 Multi-copper polyphenol oxidoreductase laccase JH254_06310 PF00004 ATPase family associated with various cellular activities (AAA) JH254_06310 PF10431 C-terminal, D2-small domain, of ClpB protein JH254_06310 PF02861 Clp amino terminal domain, pathogenicity island component JH254_06310 PF17871 AAA lid domain JH254_06310 PF07724 AAA domain (Cdc48 subfamily) JH254_06315 PF03466 LysR substrate binding domain JH254_06315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_06330 PF03590 Aspartate-ammonia ligase JH254_06335 PF01037 Lrp/AsnC ligand binding domain JH254_06365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_06365 PF00512 His Kinase A (phospho-acceptor) domain JH254_06375 PF00072 Response regulator receiver domain JH254_06375 PF00158 Sigma-54 interaction domain JH254_06380 PF06496 Protein of unknown function (DUF1097) JH254_06385 PF00174 Oxidoreductase molybdopterin binding domain JH254_06390 PF01794 Ferric reductase like transmembrane component JH254_06405 PF00072 Response regulator receiver domain JH254_06405 PF00486 Transcriptional regulatory protein, C terminal JH254_06410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_06420 PF01568 Molydopterin dinucleotide binding domain JH254_06420 PF18364 Molybdopterin oxidoreductase N-terminal domain JH254_06420 PF00384 Molybdopterin oxidoreductase JH254_06425 PF03264 NapC/NirT cytochrome c family, N-terminal region JH254_06430 PF01131 DNA topoisomerase JH254_06430 PF01751 Toprim domain JH254_06435 PF02386 Cation transport protein JH254_06440 PF02254 TrkA-N domain JH254_06440 PF02080 TrkA-C domain JH254_06445 PF01565 FAD binding domain JH254_06445 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JH254_06450 PF08279 HTH domain JH254_06450 PF03099 Biotin/lipoate A/B protein ligase family JH254_06450 PF02237 Biotin protein ligase C terminal domain JH254_06455 PF00485 Phosphoribulokinase / Uridine kinase family JH254_06470 PF03143 Elongation factor Tu C-terminal domain JH254_06470 PF03144 Elongation factor Tu domain 2 JH254_06470 PF00009 Elongation factor Tu GTP binding domain JH254_06480 PF00584 SecE/Sec61-gamma subunits of protein translocation complex JH254_06485 PF02357 Transcription termination factor nusG JH254_06485 PF00467 KOW motif JH254_06490 PF03946 Ribosomal protein L11, N-terminal domain JH254_06490 PF00298 Ribosomal protein L11, RNA binding domain JH254_06495 PF00687 Ribosomal protein L1p/L10e family JH254_06500 PF00466 Ribosomal protein L10 JH254_06505 PF16320 Ribosomal protein L7/L12 dimerisation domain JH254_06505 PF00542 Ribosomal protein L7/L12 C-terminal domain JH254_06510 PF10385 RNA polymerase beta subunit external 1 domain JH254_06510 PF00562 RNA polymerase Rpb2, domain 6 JH254_06510 PF04565 RNA polymerase Rpb2, domain 3 JH254_06510 PF04563 RNA polymerase beta subunit JH254_06510 PF04561 RNA polymerase Rpb2, domain 2 JH254_06510 PF04560 RNA polymerase Rpb2, domain 7 JH254_06515 PF00623 RNA polymerase Rpb1, domain 2 JH254_06515 PF04983 RNA polymerase Rpb1, domain 3 JH254_06515 PF04997 RNA polymerase Rpb1, domain 1 JH254_06515 PF04998 RNA polymerase Rpb1, domain 5 JH254_06515 PF05000 RNA polymerase Rpb1, domain 4 JH254_06520 PF08348 YheO-like PAS domain JH254_06520 PF13309 HTH domain JH254_06525 PF01042 Endoribonuclease L-PSP JH254_06530 PF02635 DsrE/DsrF-like family JH254_06535 PF02635 DsrE/DsrF-like family JH254_06540 PF04077 DsrH like protein JH254_06545 PF00164 Ribosomal protein S12/S23 JH254_06550 PF00177 Ribosomal protein S7p/S5e JH254_06555 PF00009 Elongation factor Tu GTP binding domain JH254_06555 PF14492 Elongation Factor G, domain II JH254_06555 PF00679 Elongation factor G C-terminus JH254_06555 PF03144 Elongation factor Tu domain 2 JH254_06555 PF03764 Elongation factor G, domain IV JH254_06560 PF03143 Elongation factor Tu C-terminal domain JH254_06560 PF03144 Elongation factor Tu domain 2 JH254_06560 PF00009 Elongation factor Tu GTP binding domain JH254_06585 PF01042 Endoribonuclease L-PSP JH254_06600 PF03702 Anhydro-N-acetylmuramic acid kinase JH254_06605 PF01476 LysM domain JH254_06605 PF08525 Opacity-associated protein A N-terminal motif JH254_06605 PF01551 Peptidase family M23 JH254_06610 PF00579 tRNA synthetases class I (W and Y) JH254_06615 PF01204 Trehalase JH254_06625 PF01161 Phosphatidylethanolamine-binding protein JH254_06630 PF00709 Adenylosuccinate synthetase JH254_06635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_06635 PF03466 LysR substrate binding domain JH254_06645 PF00155 Aminotransferase class I and II JH254_06650 PF07690 Major Facilitator Superfamily JH254_06655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_06655 PF03466 LysR substrate binding domain JH254_06660 PF00106 short chain dehydrogenase JH254_06665 PF08496 Peptidase family S49 N-terminal JH254_06665 PF01343 Peptidase family S49 JH254_06670 PF04996 Succinylarginine dihydrolase JH254_06675 PF01396 Topoisomerase DNA binding C4 zinc finger JH254_06675 PF01751 Toprim domain JH254_06675 PF01131 DNA topoisomerase JH254_06675 PF08272 Topoisomerase I zinc-ribbon-like JH254_06690 PF08447 PAS fold JH254_06690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JH254_06695 PF02838 Glycosyl hydrolase family 20, domain 2 JH254_06695 PF00728 Glycosyl hydrolase family 20, catalytic domain JH254_06700 PF01869 BadF/BadG/BcrA/BcrD ATPase family JH254_06710 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JH254_06710 PF00005 ABC transporter JH254_06715 PF00005 ABC transporter JH254_06715 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JH254_06720 PF00528 Binding-protein-dependent transport system inner membrane component JH254_06720 PF12911 N-terminal TM domain of oligopeptide transport permease C JH254_06725 PF00528 Binding-protein-dependent transport system inner membrane component JH254_06730 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JH254_06735 PF04055 Radical SAM superfamily JH254_06735 PF00919 Uncharacterized protein family UPF0004 JH254_06735 PF18693 TRAM domain JH254_06740 PF00072 Response regulator receiver domain JH254_06745 PF01022 Bacterial regulatory protein, arsR family JH254_06750 PF01758 Sodium Bile acid symporter family JH254_06755 PF03960 ArsC family JH254_06770 PF02049 Flagellar hook-basal body complex protein FliE JH254_06775 PF08345 Flagellar M-ring protein C-terminal JH254_06775 PF01514 Secretory protein of YscJ/FliF family JH254_06780 PF01706 FliG C-terminal domain JH254_06780 PF14842 FliG N-terminal domain JH254_06780 PF14841 FliG middle domain JH254_06790 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JH254_06790 PF18269 T3SS EscN ATPase C-terminal domain JH254_06810 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JH254_06810 PF02154 Flagellar motor switch protein FliM JH254_06815 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JH254_06820 PF04347 Flagellar biosynthesis protein, FliO JH254_06825 PF00813 FliP family JH254_06830 PF01313 Bacterial export proteins, family 3 JH254_06835 PF01311 Bacterial export proteins, family 1 JH254_06840 PF01312 FlhB HrpN YscU SpaS Family JH254_06845 PF00771 FHIPEP family JH254_06850 PF00448 SRP54-type protein, GTPase domain JH254_06855 PF10609 NUBPL iron-transfer P-loop NTPase JH254_06860 PF04545 Sigma-70, region 4 JH254_06860 PF04542 Sigma-70 region 2 JH254_06860 PF04539 Sigma-70 region 3 JH254_06865 PF00072 Response regulator receiver domain JH254_06870 PF04344 Chemotaxis phosphatase, CheZ JH254_06875 PF00072 Response regulator receiver domain JH254_06875 PF01627 Hpt domain JH254_06875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_06875 PF02895 Signal transducing histidine kinase, homodimeric domain JH254_06875 PF01584 CheW-like domain JH254_06880 PF00072 Response regulator receiver domain JH254_06880 PF01339 CheB methylesterase JH254_06885 PF01618 MotA/TolQ/ExbB proton channel family JH254_06890 PF00691 OmpA family JH254_06890 PF13677 Membrane MotB of proton-channel complex MotA/MotB JH254_06895 PF13614 AAA domain JH254_06905 PF01584 CheW-like domain JH254_06915 PF00005 ABC transporter JH254_06920 PF03379 CcmB protein JH254_06925 PF01578 Cytochrome C assembly protein JH254_06930 PF04995 Heme exporter protein D (CcmD) JH254_06935 PF03100 CcmE JH254_06940 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JH254_06940 PF01578 Cytochrome C assembly protein JH254_06945 PF08534 Redoxin JH254_06950 PF03918 Cytochrome C biogenesis protein JH254_06960 PF04333 MlaA lipoprotein JH254_06965 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JH254_06965 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JH254_06970 PF00462 Glutaredoxin JH254_06975 PF01029 NusB family JH254_06975 PF01189 16S rRNA methyltransferase RsmB/F JH254_06990 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region JH254_06990 PF01243 Pyridoxamine 5'-phosphate oxidase JH254_06995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_06995 PF03466 LysR substrate binding domain JH254_07000 PF01546 Peptidase family M20/M25/M40 JH254_07020 PF13508 Acetyltransferase (GNAT) domain JH254_07050 PF01668 SmpB protein JH254_07055 PF03364 Polyketide cyclase / dehydrase and lipid transport JH254_07060 PF03658 RnfH family Ubiquitin JH254_07065 PF13460 NAD(P)H-binding JH254_07070 PF04355 SmpA / OmlA family JH254_07075 PF00465 Iron-containing alcohol dehydrogenase JH254_07080 PF01048 Phosphorylase superfamily JH254_07085 PF00849 RNA pseudouridylate synthase JH254_07090 PF01156 Inosine-uridine preferring nucleoside hydrolase JH254_07105 PF07509 Protein of unknown function (DUF1523) JH254_07110 PF00672 HAMP domain JH254_07110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JH254_07115 PF01810 LysE type translocator JH254_07125 PF03471 Transporter associated domain JH254_07125 PF00999 Sodium/hydrogen exchanger family JH254_07125 PF02080 TrkA-C domain JH254_07135 PF02557 D-alanyl-D-alanine carboxypeptidase JH254_07140 PF01546 Peptidase family M20/M25/M40 JH254_07140 PF07687 Peptidase dimerisation domain JH254_07145 PF03960 ArsC family JH254_07150 PF07508 Recombinase JH254_07150 PF00239 Resolvase, N terminal domain JH254_07150 PF13408 Recombinase zinc beta ribbon domain JH254_07165 PF02796 Helix-turn-helix domain of resolvase JH254_07165 PF00239 Resolvase, N terminal domain JH254_07185 PF03606 C4-dicarboxylate anaerobic carrier JH254_07190 PF07687 Peptidase dimerisation domain JH254_07190 PF01546 Peptidase family M20/M25/M40 JH254_07200 PF03605 Anaerobic c4-dicarboxylate membrane transporter JH254_07205 PF01336 OB-fold nucleic acid binding domain JH254_07205 PF00152 tRNA synthetases class II (D, K and N) JH254_07220 PF00202 Aminotransferase class-III JH254_07225 PF06968 Biotin and Thiamin Synthesis associated domain JH254_07225 PF04055 Radical SAM superfamily JH254_07230 PF00155 Aminotransferase class I and II JH254_07235 PF12697 Alpha/beta hydrolase family JH254_07235 PF08241 Methyltransferase domain JH254_07245 PF01435 Peptidase family M48 JH254_07250 PF03473 MOSC domain JH254_07250 PF00111 2Fe-2S iron-sulfur cluster binding domain JH254_07250 PF03476 MOSC N-terminal beta barrel domain JH254_07250 PF03473 MOSC domain JH254_07250 PF03476 MOSC N-terminal beta barrel domain JH254_07250 PF00111 2Fe-2S iron-sulfur cluster binding domain JH254_07255 PF07992 Pyridine nucleotide-disulphide oxidoreductase JH254_07255 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JH254_07255 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JH254_07260 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg JH254_07260 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase JH254_07260 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II JH254_07260 PF10371 Domain of unknown function JH254_07260 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JH254_07290 PF00072 Response regulator receiver domain JH254_07290 PF02954 Bacterial regulatory protein, Fis family JH254_07290 PF00158 Sigma-54 interaction domain JH254_07295 PF00999 Sodium/hydrogen exchanger family JH254_07295 PF02254 TrkA-N domain JH254_07310 PF04381 Putative exonuclease, RdgC JH254_07315 PF00583 Acetyltransferase (GNAT) family JH254_07320 PF00149 Calcineurin-like phosphoesterase JH254_07320 PF12320 Type 5 capsule protein repressor C-terminal domain JH254_07330 PF01292 Prokaryotic cytochrome b561 JH254_07335 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JH254_07340 PF05524 PEP-utilising enzyme, N-terminal JH254_07340 PF00391 PEP-utilising enzyme, mobile domain JH254_07340 PF02896 PEP-utilising enzyme, TIM barrel domain JH254_07345 PF00381 PTS HPr component phosphorylation site JH254_07350 PF00291 Pyridoxal-phosphate dependent enzyme JH254_07355 PF17862 AAA+ lid domain JH254_07355 PF01434 Peptidase family M41 JH254_07355 PF00004 ATPase family associated with various cellular activities (AAA) JH254_07365 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JH254_07365 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JH254_07370 PF01980 tRNA-methyltransferase O JH254_07370 PF18389 TrmO C-terminal domain JH254_07390 PF00005 ABC transporter JH254_07390 PF00664 ABC transporter transmembrane region JH254_07395 PF00664 ABC transporter transmembrane region JH254_07395 PF00005 ABC transporter JH254_07410 PF00072 Response regulator receiver domain JH254_07410 PF00486 Transcriptional regulatory protein, C terminal JH254_07420 PF03737 Aldolase/RraA JH254_07435 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) JH254_07440 PF00588 SpoU rRNA Methylase family JH254_07445 PF01842 ACT domain JH254_07445 PF00696 Amino acid kinase family JH254_07445 PF13840 ACT domain JH254_07445 PF03447 Homoserine dehydrogenase, NAD binding domain JH254_07445 PF00742 Homoserine dehydrogenase JH254_07450 PF08544 GHMP kinases C terminal JH254_07450 PF00288 GHMP kinases N terminal domain JH254_07455 PF00291 Pyridoxal-phosphate dependent enzyme JH254_07455 PF14821 Threonine synthase N terminus JH254_07485 PF02028 BCCT, betaine/carnitine/choline family transporter JH254_07515 PF13426 PAS domain JH254_07515 PF08447 PAS fold JH254_07515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JH254_07530 PF04632 Fusaric acid resistance protein family JH254_07535 PF03205 Molybdopterin guanine dinucleotide synthesis protein B JH254_07540 PF12804 MobA-like NTP transferase domain JH254_07545 PF00390 Malic enzyme, N-terminal domain JH254_07545 PF03949 Malic enzyme, NAD binding domain JH254_07555 PF00860 Permease family JH254_07565 PF10282 Lactonase, 7-bladed beta-propeller JH254_07570 PF01810 LysE type translocator JH254_07575 PF00924 Mechanosensitive ion channel JH254_07575 PF12795 Mechanosensitive ion channel porin domain JH254_07575 PF12794 Mechanosensitive ion channel inner membrane domain 1 JH254_07580 PF00224 Pyruvate kinase, barrel domain JH254_07580 PF02887 Pyruvate kinase, alpha/beta domain JH254_07585 PF08007 Cupin superfamily protein JH254_07590 PF00206 Lyase JH254_07590 PF08328 Adenylosuccinate lyase C-terminal JH254_07595 PF04356 Protein of unknown function (DUF489) JH254_07605 PF00293 NUDIX domain JH254_07610 PF00849 RNA pseudouridylate synthase JH254_07615 PF00583 Acetyltransferase (GNAT) family JH254_07655 PF00180 Isocitrate/isopropylmalate dehydrogenase JH254_07665 PF00291 Pyridoxal-phosphate dependent enzyme JH254_07670 PF03466 LysR substrate binding domain JH254_07670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_07675 PF00816 H-NS histone family JH254_07680 PF00793 DAHP synthetase I family JH254_07685 PF04954 Siderophore-interacting protein JH254_07685 PF08021 Siderophore-interacting FAD-binding domain JH254_07690 PF02321 Outer membrane efflux protein JH254_07695 PF12704 MacB-like periplasmic core domain JH254_07695 PF02687 FtsX-like permease family JH254_07695 PF00005 ABC transporter JH254_07700 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JH254_07710 PF02463 RecF/RecN/SMC N terminal domain JH254_07715 PF00990 Diguanylate cyclase, GGDEF domain JH254_07715 PF17158 Membrane-associated sensor, integral membrane domain JH254_07720 PF01513 ATP-NAD kinase JH254_07725 PF01025 GrpE JH254_07730 PF00012 Hsp70 protein JH254_07735 PF01556 DnaJ C terminal domain JH254_07735 PF00226 DnaJ domain JH254_07735 PF00684 DnaJ central domain JH254_07740 PF02264 LamB porin JH254_07740 PF11471 Maltoporin periplasmic N-terminal extension JH254_07745 PF00294 pfkB family carbohydrate kinase JH254_07750 PF00367 phosphotransferase system, EIIB JH254_07750 PF02378 Phosphotransferase system, EIIC JH254_07755 PF08244 Glycosyl hydrolases family 32 C terminal JH254_07755 PF00251 Glycosyl hydrolases family 32 N-terminal domain JH254_07760 PF00356 Bacterial regulatory proteins, lacI family JH254_07760 PF13407 Periplasmic binding protein domain JH254_07765 PF02308 MgtC family JH254_07775 PF07992 Pyridine nucleotide-disulphide oxidoreductase JH254_07790 PF04143 Sulphur transport JH254_07805 PF00873 AcrB/AcrD/AcrF family JH254_07810 PF00990 Diguanylate cyclase, GGDEF domain JH254_07810 PF00563 EAL domain JH254_07810 PF03707 Bacterial signalling protein N terminal repeat JH254_07815 PF03099 Biotin/lipoate A/B protein ligase family JH254_07815 PF10437 Bacterial lipoate protein ligase C-terminus JH254_07830 PF00873 AcrB/AcrD/AcrF family JH254_07835 PF00529 HlyD membrane-fusion protein of T1SS JH254_07835 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JH254_07845 PF03372 Endonuclease/Exonuclease/phosphatase family JH254_07855 PF00072 Response regulator receiver domain JH254_07860 PF00011 Hsp20/alpha crystallin family JH254_07865 PF02424 ApbE family JH254_07870 PF00127 Copper binding proteins, plastocyanin/azurin family JH254_07875 PF01609 Transposase DDE domain JH254_07875 PF13808 DDE_Tnp_1-associated JH254_07925 PF03692 Putative zinc- or iron-chelating domain JH254_07930 PF02901 Pyruvate formate lyase-like JH254_07930 PF01228 Glycine radical JH254_07935 PF01226 Formate/nitrite transporter JH254_07940 PF18381 YcaO cyclodehydratase C-terminal domain JH254_07940 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding JH254_07950 PF00893 Small Multidrug Resistance protein JH254_07955 PF01118 Semialdehyde dehydrogenase, NAD binding domain JH254_07955 PF02774 Semialdehyde dehydrogenase, dimerisation domain JH254_07960 PF00313 'Cold-shock' DNA-binding domain JH254_07965 PF02617 ATP-dependent Clp protease adaptor protein ClpS JH254_07970 PF10431 C-terminal, D2-small domain, of ClpB protein JH254_07970 PF02861 Clp amino terminal domain, pathogenicity island component JH254_07970 PF17871 AAA lid domain JH254_07970 PF07724 AAA domain (Cdc48 subfamily) JH254_07970 PF00004 ATPase family associated with various cellular activities (AAA) JH254_07975 PF01176 Translation initiation factor 1A / IF-1 JH254_07980 PF04376 Arginine-tRNA-protein transferase, N terminus JH254_07980 PF04377 Arginine-tRNA-protein transferase, C terminus JH254_07985 PF03588 Leucyl/phenylalanyl-tRNA protein transferase JH254_07990 PF05433 Glycine zipper 2TM domain JH254_07995 PF00990 Diguanylate cyclase, GGDEF domain JH254_07995 PF05230 MASE2 domain JH254_08000 PF07992 Pyridine nucleotide-disulphide oxidoreductase JH254_08005 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JH254_08005 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JH254_08010 PF01037 Lrp/AsnC ligand binding domain JH254_08015 PF01580 FtsK/SpoIIIE family JH254_08015 PF09397 Ftsk gamma domain JH254_08015 PF13491 4TM region of DNA translocase FtsK/SpoIIIE JH254_08015 PF17854 FtsK alpha domain JH254_08020 PF03548 Outer membrane lipoprotein carrier protein LolA JH254_08025 PF12002 MgsA AAA+ ATPase C terminal JH254_08025 PF16193 AAA C-terminal domain JH254_08025 PF00004 ATPase family associated with various cellular activities (AAA) JH254_08030 PF02403 Seryl-tRNA synthetase N-terminal domain JH254_08030 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JH254_08035 PF02674 Colicin V production protein JH254_08040 PF00156 Phosphoribosyl transferase domain JH254_08045 PF00232 Glycosyl hydrolase family 1 JH254_08050 PF00367 phosphotransferase system, EIIB JH254_08050 PF02378 Phosphotransferase system, EIIC JH254_08055 PF00356 Bacterial regulatory proteins, lacI family JH254_08060 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) JH254_08065 PF00005 ABC transporter JH254_08070 PF00005 ABC transporter JH254_08070 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JH254_08075 PF00528 Binding-protein-dependent transport system inner membrane component JH254_08075 PF12911 N-terminal TM domain of oligopeptide transport permease C JH254_08080 PF00528 Binding-protein-dependent transport system inner membrane component JH254_08085 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JH254_08090 PF02954 Bacterial regulatory protein, Fis family JH254_08090 PF00158 Sigma-54 interaction domain JH254_08095 PF04012 PspA/IM30 family JH254_08100 PF06667 Phage shock protein B JH254_08110 PF04317 YcjX-like family, DUF463 JH254_08115 PF05128 Domain of unknown function (DUF697) JH254_08120 PF00351 Biopterin-dependent aromatic amino acid hydroxylase JH254_08125 PF01329 Pterin 4 alpha carbinolamine dehydratase JH254_08130 PF18024 Helix-turn-helix domain JH254_08130 PF00158 Sigma-54 interaction domain JH254_08135 PF13689 YfiR/HmsC-like JH254_08145 PF00691 OmpA family JH254_08150 PF04055 Radical SAM superfamily JH254_08155 PF02601 Exonuclease VII, large subunit JH254_08155 PF13742 OB-fold nucleic acid binding domain JH254_08165 PF00128 Alpha amylase, catalytic domain JH254_08165 PF03423 Carbohydrate binding domain (family 25) JH254_08165 PF01373 Glycosyl hydrolase family 14 JH254_08175 PF00571 CBS domain JH254_08175 PF00478 IMP dehydrogenase / GMP reductase domain JH254_08180 PF00117 Glutamine amidotransferase class-I JH254_08180 PF02540 NAD synthase JH254_08180 PF00958 GMP synthase C terminal domain JH254_08200 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JH254_08200 PF02805 Metal binding domain of Ada JH254_08200 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JH254_08200 PF12833 Helix-turn-helix domain JH254_08220 PF01047 MarR family JH254_08230 PF05724 Thiopurine S-methyltransferase (TPMT) JH254_08235 PF05193 Peptidase M16 inactive domain JH254_08235 PF00675 Insulinase (Peptidase family M16) JH254_08235 PF16187 Middle or third domain of peptidase_M16 JH254_08240 PF00300 Histidine phosphatase superfamily (branch 1) JH254_08250 PF00892 EamA-like transporter family JH254_08255 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JH254_08265 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain JH254_08270 PF00271 Helicase conserved C-terminal domain JH254_08270 PF00270 DEAD/DEAH box helicase JH254_08270 PF17757 UvrB interaction domain JH254_08270 PF02559 CarD-like/TRCF domain JH254_08270 PF03461 TRCF domain JH254_08280 PF12704 MacB-like periplasmic core domain JH254_08280 PF02687 FtsX-like permease family JH254_08285 PF00005 ABC transporter JH254_08290 PF02687 FtsX-like permease family JH254_08290 PF12704 MacB-like periplasmic core domain JH254_08305 PF05698 Bacterial trigger factor protein (TF) C-terminus JH254_08305 PF05697 Bacterial trigger factor protein (TF) JH254_08305 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JH254_08310 PF00574 Clp protease JH254_08315 PF10431 C-terminal, D2-small domain, of ClpB protein JH254_08315 PF06689 ClpX C4-type zinc finger JH254_08315 PF07724 AAA domain (Cdc48 subfamily) JH254_08320 PF02190 ATP-dependent protease La (LON) substrate-binding domain JH254_08320 PF00004 ATPase family associated with various cellular activities (AAA) JH254_08320 PF05362 Lon protease (S16) C-terminal proteolytic domain JH254_08325 PF00216 Bacterial DNA-binding protein JH254_08330 PF13145 PPIC-type PPIASE domain JH254_08335 PF00005 ABC transporter JH254_08335 PF12848 ABC transporter JH254_08340 PF00474 Sodium:solute symporter family JH254_08345 PF04341 Protein of unknown function, DUF485 JH254_08360 PF00378 Enoyl-CoA hydratase/isomerase JH254_08365 PF01235 Sodium:alanine symporter family JH254_08375 PF06167 Glucose-regulated metallo-peptidase M90 JH254_08380 PF01184 GPR1/FUN34/yaaH family JH254_08390 PF09278 MerR, DNA binding JH254_08390 PF00376 MerR family regulatory protein JH254_08395 PF00682 HMGL-like JH254_08400 PF00364 Biotin-requiring enzyme JH254_08400 PF00289 Biotin carboxylase, N-terminal domain JH254_08400 PF02785 Biotin carboxylase C-terminal domain JH254_08400 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JH254_08405 PF00378 Enoyl-CoA hydratase/isomerase JH254_08410 PF01039 Carboxyl transferase domain JH254_08415 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JH254_08415 PF02770 Acyl-CoA dehydrogenase, middle domain JH254_08415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JH254_08420 PF00171 Aldehyde dehydrogenase family JH254_08425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JH254_08425 PF02770 Acyl-CoA dehydrogenase, middle domain JH254_08425 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JH254_08430 PF00378 Enoyl-CoA hydratase/isomerase JH254_08435 PF00378 Enoyl-CoA hydratase/isomerase JH254_08440 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JH254_08440 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JH254_08450 PF13520 Amino acid permease JH254_08455 PF01925 Sulfite exporter TauE/SafE JH254_08490 PF01609 Transposase DDE domain JH254_08490 PF13808 DDE_Tnp_1-associated JH254_08495 PF01609 Transposase DDE domain JH254_08495 PF05598 Transposase domain (DUF772) JH254_08505 PF01609 Transposase DDE domain JH254_08515 PF10150 Ribonuclease E/G family JH254_08515 PF12111 Polyribonucleotide phosphorylase C terminal JH254_08515 PF00575 S1 RNA binding domain JH254_08520 PF00849 RNA pseudouridylate synthase JH254_08520 PF01479 S4 domain JH254_08525 PF02545 Maf-like protein JH254_08535 PF02620 Large ribosomal RNA subunit accumulation protein YceD JH254_08540 PF01783 Ribosomal L32p protein family JH254_08545 PF02504 Fatty acid synthesis protein JH254_08550 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JH254_08550 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JH254_08555 PF00698 Acyl transferase domain JH254_08565 PF00550 Phosphopantetheine attachment site JH254_08570 PF02801 Beta-ketoacyl synthase, C-terminal domain JH254_08570 PF00109 Beta-ketoacyl synthase, N-terminal domain JH254_08575 PF01063 Amino-transferase class IV JH254_08580 PF02618 YceG-like family JH254_08585 PF02223 Thymidylate kinase JH254_08590 PF09115 DNA polymerase III, delta subunit, C terminal JH254_08595 PF01026 TatD related DNase JH254_08600 PF00589 Phage integrase family JH254_08610 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF JH254_08610 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF JH254_08610 PF01189 16S rRNA methyltransferase RsmB/F JH254_08615 PF02470 MlaD protein JH254_08620 PF04403 Paraquat-inducible protein A JH254_08630 PF07130 YebG protein JH254_08640 PF13654 AAA domain JH254_08640 PF05362 Lon protease (S16) C-terminal proteolytic domain JH254_08645 PF07977 FabA-like domain JH254_08650 PF04957 Ribosome modulation factor JH254_08660 PF00005 ABC transporter JH254_08660 PF16326 ABC transporter C-terminal domain JH254_08660 PF12848 ABC transporter JH254_08670 PF02926 THUMP domain JH254_08670 PF10672 S-adenosylmethionine-dependent methyltransferase JH254_08670 PF01170 Putative RNA methylase family UPF0020 JH254_08675 PF07126 Cell-division protein ZapC JH254_08680 PF01180 Dihydroorotate dehydrogenase JH254_08685 PF05088 Bacterial NAD-glutamate dehydrogenase JH254_08695 PF17432 Domain of unknown function (DUF3458_C) ARM repeats JH254_08695 PF01433 Peptidase family M1 domain JH254_08695 PF11940 Domain of unknown function (DUF3458) Ig-like fold JH254_08700 PF00595 PDZ domain JH254_08700 PF17804 Tail specific protease N-terminal domain JH254_08700 PF03572 Peptidase family S41 JH254_08700 PF11818 C-terminal domain of tail specific protease (DUF3340) JH254_08705 PF04352 ProQ/FINO family JH254_08705 PF17516 ProQ C-terminal domain JH254_08710 PF13185 GAF domain JH254_08720 PF00115 Cytochrome C and Quinol oxidase polypeptide I JH254_08735 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JH254_08735 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP JH254_08745 PF00403 Heavy-metal-associated domain JH254_08760 PF13545 Crp-like helix-turn-helix domain JH254_08760 PF00027 Cyclic nucleotide-binding domain JH254_08765 PF00582 Universal stress protein family JH254_08770 PF01171 PP-loop family JH254_08785 PF02798 Glutathione S-transferase, N-terminal domain JH254_08785 PF00043 Glutathione S-transferase, C-terminal domain JH254_08790 PF05025 RbsD / FucU transport protein family JH254_08795 PF00005 ABC transporter JH254_08800 PF02653 Branched-chain amino acid transport system / permease component JH254_08805 PF13407 Periplasmic binding protein domain JH254_08810 PF00294 pfkB family carbohydrate kinase JH254_08815 PF00356 Bacterial regulatory proteins, lacI family JH254_08830 PF02146 Sir2 family JH254_08845 PF00512 His Kinase A (phospho-acceptor) domain JH254_08845 PF00072 Response regulator receiver domain JH254_08845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_08845 PF09456 RcsC Alpha-Beta-Loop (ABL) JH254_08850 PF00216 Bacterial DNA-binding protein JH254_08855 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JH254_08855 PF03147 Ferredoxin-fold anticodon binding domain JH254_08855 PF03484 tRNA synthetase B5 domain JH254_08855 PF03483 B3/4 domain JH254_08855 PF01588 Putative tRNA binding domain JH254_08860 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JH254_08860 PF01409 tRNA synthetases class II core domain (F) JH254_08865 PF00453 Ribosomal protein L20 JH254_08870 PF01632 Ribosomal protein L35 JH254_08875 PF05198 Translation initiation factor IF-3, N-terminal domain JH254_08875 PF00707 Translation initiation factor IF-3, C-terminal domain JH254_08880 PF03129 Anticodon binding domain JH254_08880 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JH254_08880 PF02824 TGS domain JH254_08880 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JH254_08895 PF04055 Radical SAM superfamily JH254_08905 PF03989 DNA gyrase C-terminal domain, beta-propeller JH254_08905 PF00521 DNA gyrase/topoisomerase IV, subunit A JH254_08915 PF13419 Haloacid dehalogenase-like hydrolase JH254_08920 PF00317 Ribonucleotide reductase, all-alpha domain JH254_08920 PF02867 Ribonucleotide reductase, barrel domain JH254_08920 PF03477 ATP cone domain JH254_08925 PF00268 Ribonucleotide reductase, small chain JH254_08930 PF00111 2Fe-2S iron-sulfur cluster binding domain JH254_08935 PF06725 3D domain JH254_08935 PF03562 MltA specific insert domain JH254_08940 PF06945 Protein of unknown function (DUF1289) JH254_08945 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JH254_08945 PF02378 Phosphotransferase system, EIIC JH254_08950 PF00294 pfkB family carbohydrate kinase JH254_08955 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JH254_08955 PF00381 PTS HPr component phosphorylation site JH254_08960 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JH254_08960 PF00356 Bacterial regulatory proteins, lacI family JH254_08965 PF03222 Tryptophan/tyrosine permease family JH254_08980 PF00271 Helicase conserved C-terminal domain JH254_08980 PF00270 DEAD/DEAH box helicase JH254_08990 PF01264 Chorismate synthase JH254_08995 PF05175 Methyltransferase small domain JH254_09000 PF01713 Smr domain JH254_09035 PF08274 PhnA Zinc-Ribbon JH254_09035 PF03831 PhnA domain JH254_09050 PF01425 Amidase JH254_09055 PF04371 Porphyromonas-type peptidyl-arginine deiminase JH254_09060 PF03466 LysR substrate binding domain JH254_09060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_09070 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JH254_09075 PF00583 Acetyltransferase (GNAT) family JH254_09080 PF00132 Bacterial transferase hexapeptide (six repeats) JH254_09080 PF12804 MobA-like NTP transferase domain JH254_09085 PF00583 Acetyltransferase (GNAT) family JH254_09095 PF16658 Class II release factor RF3, C-terminal domain JH254_09095 PF00009 Elongation factor Tu GTP binding domain JH254_09095 PF03144 Elongation factor Tu domain 2 JH254_09100 PF00072 Response regulator receiver domain JH254_09100 PF00990 Diguanylate cyclase, GGDEF domain JH254_09105 PF00563 EAL domain JH254_09105 PF00990 Diguanylate cyclase, GGDEF domain JH254_09105 PF08448 PAS fold JH254_09110 PF05762 VWA domain containing CoxE-like protein JH254_09115 PF12592 Protein of unknown function (DUF3763) JH254_09115 PF07728 AAA domain (dynein-related subfamily) JH254_09115 PF17868 AAA lid domain JH254_09125 PF00583 Acetyltransferase (GNAT) family JH254_09135 PF00501 AMP-binding enzyme JH254_09145 PF01177 Asp/Glu/Hydantoin racemase JH254_09160 PF00392 Bacterial regulatory proteins, gntR family JH254_09160 PF00155 Aminotransferase class I and II JH254_09175 PF00209 Sodium:neurotransmitter symporter family JH254_09180 PF00209 Sodium:neurotransmitter symporter family JH254_09200 PF07690 Major Facilitator Superfamily JH254_09210 PF01037 Lrp/AsnC ligand binding domain JH254_09225 PF01047 MarR family JH254_09230 PF00107 Zinc-binding dehydrogenase JH254_09230 PF16884 N-terminal domain of oxidoreductase JH254_09235 PF00293 NUDIX domain JH254_09250 PF01641 SelR domain JH254_09255 PF00128 Alpha amylase, catalytic domain JH254_09255 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JH254_09260 PF00128 Alpha amylase, catalytic domain JH254_09260 PF02806 Alpha amylase, C-terminal all-beta domain JH254_09260 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JH254_09265 PF02446 4-alpha-glucanotransferase JH254_09270 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JH254_09270 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JH254_09275 PF01263 Aldose 1-epimerase JH254_09280 PF02445 Quinolinate synthetase A protein JH254_09285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JH254_09285 PF00672 HAMP domain JH254_09360 PF16331 TolA binding protein trimerisation JH254_09360 PF13174 Tetratricopeptide repeat JH254_09365 PF00691 OmpA family JH254_09370 PF04052 TolB amino-terminal domain JH254_09370 PF07676 WD40-like Beta Propeller Repeat JH254_09380 PF02472 Biopolymer transport protein ExbD/TolR JH254_09385 PF01618 MotA/TolQ/ExbB proton channel family JH254_09390 PF03061 Thioesterase superfamily JH254_09395 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) JH254_09400 PF08173 Membrane bound YbgT-like protein JH254_09405 PF02322 Cytochrome bd terminal oxidase subunit II JH254_09410 PF01654 Cytochrome bd terminal oxidase subunit I JH254_09420 PF05496 Holliday junction DNA helicase RuvB P-loop domain JH254_09420 PF05491 RuvB C-terminal winged helix domain JH254_09420 PF17864 RuvB AAA lid domain JH254_09425 PF07499 RuvA, C-terminal domain JH254_09425 PF01330 RuvA N terminal domain JH254_09430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JH254_09430 PF00672 HAMP domain JH254_09435 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JH254_09435 PF03129 Anticodon binding domain JH254_09435 PF04073 Aminoacyl-tRNA editing domain JH254_09440 PF00929 Exonuclease JH254_09445 PF00106 short chain dehydrogenase JH254_09460 PF00378 Enoyl-CoA hydratase/isomerase JH254_09465 PF10952 Protein of unknown function (DUF2753) JH254_09475 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JH254_09490 PF00270 DEAD/DEAH box helicase JH254_09490 PF00271 Helicase conserved C-terminal domain JH254_09495 PF08534 Redoxin JH254_09500 PF00403 Heavy-metal-associated domain JH254_09520 PF02583 Metal-sensitive transcriptional repressor JH254_09525 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) JH254_09530 PF01270 Glycosyl hydrolases family 8 JH254_09535 PF03170 Bacterial cellulose synthase subunit JH254_09540 PF00535 Glycosyl transferase family 2 JH254_09540 PF07238 PilZ domain JH254_09545 PF06564 Cellulose biosynthesis protein BcsQ JH254_09555 PF11658 Cellulose biosynthesis protein BcsG JH254_09560 PF00155 Aminotransferase class I and II JH254_09575 PF04055 Radical SAM superfamily JH254_09580 PF11230 Protein of unknown function (DUF3029) JH254_09605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JH254_09605 PF08269 Cache domain JH254_09610 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading JH254_09610 PF18416 N-acetylglucosamine binding protein domain 2 JH254_09615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_09615 PF03466 LysR substrate binding domain JH254_09620 PF00005 ABC transporter JH254_09620 PF12857 TOBE-like domain JH254_09625 PF00528 Binding-protein-dependent transport system inner membrane component JH254_09630 PF00528 Binding-protein-dependent transport system inner membrane component JH254_09650 PF01385 Probable transposase JH254_09650 PF12323 Helix-turn-helix domain JH254_09650 PF07282 Putative transposase DNA-binding domain JH254_09655 PF13509 S1 domain JH254_09655 PF17783 CvfB-like winged helix domain JH254_09665 PF04269 Protein of unknown function, DUF440 JH254_09670 PF00912 Transglycosylase JH254_09675 PF04269 Protein of unknown function, DUF440 JH254_09680 PF03776 Septum formation topological specificity factor MinE JH254_09685 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JH254_09690 PF05209 Septum formation inhibitor MinC, N-terminal domain JH254_09690 PF03775 Septum formation inhibitor MinC, C-terminal domain JH254_09695 PF05166 YcgL domain JH254_09700 PF13406 Transglycosylase SLT domain JH254_09705 PF03315 Serine dehydratase beta chain JH254_09705 PF03313 Serine dehydratase alpha chain JH254_09710 PF03315 Serine dehydratase beta chain JH254_09710 PF03313 Serine dehydratase alpha chain JH254_09715 PF06865 Pyrimidine/purine nucleoside phosphorylase JH254_09720 PF00375 Sodium:dicarboxylate symporter family JH254_09725 PF00376 MerR family regulatory protein JH254_09725 PF09278 MerR, DNA binding JH254_09730 PF00108 Thiolase, N-terminal domain JH254_09730 PF02803 Thiolase, C-terminal domain JH254_09735 PF00563 EAL domain JH254_09735 PF08668 HDOD domain JH254_09740 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JH254_09745 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JH254_09755 PF08281 Sigma-70, region 4 JH254_09755 PF04542 Sigma-70 region 2 JH254_09780 PF01882 Protein of unknown function DUF58 JH254_09785 PF17863 AAA lid domain JH254_09785 PF07726 ATPase family associated with various cellular activities (AAA) JH254_09790 PF00108 Thiolase, N-terminal domain JH254_09790 PF02803 Thiolase, C-terminal domain JH254_09795 PF00378 Enoyl-CoA hydratase/isomerase JH254_09795 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JH254_09795 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JH254_09805 PF07152 YaeQ protein JH254_09815 PF07690 Major Facilitator Superfamily JH254_09820 PF00005 ABC transporter JH254_09825 PF01032 FecCD transport family JH254_09840 PF05433 Glycine zipper 2TM domain JH254_09855 PF12323 Helix-turn-helix domain JH254_09855 PF07282 Putative transposase DNA-binding domain JH254_09855 PF01385 Probable transposase JH254_09865 PF13280 WYL domain JH254_09865 PF08279 HTH domain JH254_09875 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase JH254_09875 PF01502 Phosphoribosyl-AMP cyclohydrolase JH254_09880 PF00977 Histidine biosynthesis protein JH254_09885 PF00072 Response regulator receiver domain JH254_09885 PF01627 Hpt domain JH254_09885 PF00512 His Kinase A (phospho-acceptor) domain JH254_09885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_09890 PF08448 PAS fold JH254_09890 PF00990 Diguanylate cyclase, GGDEF domain JH254_09895 PF00072 Response regulator receiver domain JH254_09900 PF00977 Histidine biosynthesis protein JH254_09905 PF00117 Glutamine amidotransferase class-I JH254_09910 PF00475 Imidazoleglycerol-phosphate dehydratase JH254_09910 PF08645 Polynucleotide kinase 3 phosphatase JH254_09915 PF00155 Aminotransferase class I and II JH254_09920 PF00815 Histidinol dehydrogenase JH254_09925 PF08029 HisG, C-terminal domain JH254_09925 PF01634 ATP phosphoribosyltransferase JH254_09935 PF04851 Type III restriction enzyme, res subunit JH254_09935 PF13307 Helicase C-terminal domain JH254_09940 PF00814 Glycoprotease family JH254_09950 PF00561 alpha/beta hydrolase fold JH254_09955 PF13193 AMP-binding enzyme C-terminal domain JH254_09955 PF00501 AMP-binding enzyme JH254_09960 PF00570 HRDC domain JH254_09960 PF01612 3'-5' exonuclease JH254_09970 PF00892 EamA-like transporter family JH254_09980 PF01207 Dihydrouridine synthase (Dus) JH254_09985 PF04304 Protein of unknown function (DUF454) JH254_09990 PF00156 Phosphoribosyl transferase domain JH254_09995 PF12169 DNA polymerase III subunits gamma and tau domain III JH254_09995 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding JH254_09995 PF12170 DNA polymerase III tau subunit V interacting with alpha JH254_10000 PF02575 YbaB/EbfC DNA-binding family JH254_10005 PF03466 LysR substrate binding domain JH254_10005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_10010 PF05726 Pirin C-terminal cupin domain JH254_10010 PF02678 Pirin JH254_10015 PF07670 Nucleoside recognition JH254_10020 PF00196 Bacterial regulatory proteins, luxR family JH254_10020 PF00072 Response regulator receiver domain JH254_10025 PF02272 DHHA1 domain JH254_10025 PF01743 Poly A polymerase head domain JH254_10025 PF00571 CBS domain JH254_10025 PF01368 DHH family JH254_10030 PF00270 DEAD/DEAH box helicase JH254_10030 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold JH254_10030 PF11898 Domain of unknown function (DUF3418) JH254_10030 PF04408 Helicase associated domain (HA2) JH254_10030 PF00271 Helicase conserved C-terminal domain JH254_10040 PF01386 Ribosomal L25p family JH254_10050 PF00072 Response regulator receiver domain JH254_10055 PF00753 Metallo-beta-lactamase superfamily JH254_10065 PF00586 AIR synthase related protein, N-terminal domain JH254_10065 PF02769 AIR synthase related protein, C-terminal domain JH254_10080 PF17785 PUA-like domain JH254_10080 PF10672 S-adenosylmethionine-dependent methyltransferase JH254_10085 PF12729 Four helix bundle sensory module for signal transduction JH254_10085 PF00672 HAMP domain JH254_10085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JH254_10090 PF00708 Acylphosphatase JH254_10100 PF09334 tRNA synthetases class I (M) JH254_10100 PF01588 Putative tRNA binding domain JH254_10100 PF08264 Anticodon-binding domain of tRNA JH254_10105 PF10609 NUBPL iron-transfer P-loop NTPase JH254_10110 PF00485 Phosphoribulokinase / Uridine kinase family JH254_10115 PF00692 dUTPase JH254_10120 PF01384 Phosphate transporter family JH254_10130 PF01497 Periplasmic binding protein JH254_10140 PF01048 Phosphorylase superfamily JH254_10145 PF02535 ZIP Zinc transporter JH254_10150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JH254_10150 PF12729 Four helix bundle sensory module for signal transduction JH254_10150 PF00672 HAMP domain JH254_10155 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JH254_10160 PF00730 HhH-GPD superfamily base excision DNA repair protein JH254_10160 PF00633 Helix-hairpin-helix motif JH254_10160 PF10576 Iron-sulfur binding domain of endonuclease III JH254_10165 PF02508 Rnf-Nqr subunit, membrane protein JH254_10170 PF04205 FMN-binding domain JH254_10175 PF03116 NQR2, RnfD, RnfE family JH254_10180 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JH254_10180 PF12838 4Fe-4S dicluster domain JH254_10180 PF10531 SLBB domain JH254_10180 PF13375 RnfC Barrel sandwich hybrid domain JH254_10185 PF04060 Putative Fe-S cluster JH254_10190 PF02508 Rnf-Nqr subunit, membrane protein JH254_10195 PF00892 EamA-like transporter family JH254_10205 PF08447 PAS fold JH254_10205 PF13426 PAS domain JH254_10205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JH254_10215 PF12241 Trans-2-enoyl-CoA reductase catalytic region JH254_10215 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase JH254_10215 PF07055 Enoyl reductase FAD binding domain JH254_10220 PF03606 C4-dicarboxylate anaerobic carrier JH254_10225 PF00155 Aminotransferase class I and II JH254_10235 PF00462 Glutaredoxin JH254_10240 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family JH254_10245 PF04851 Type III restriction enzyme, res subunit JH254_10245 PF00271 Helicase conserved C-terminal domain JH254_10250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JH254_10250 PF00529 HlyD membrane-fusion protein of T1SS JH254_10255 PF11742 Protein of unknown function (DUF3302) JH254_10265 PF00924 Mechanosensitive ion channel JH254_10265 PF12795 Mechanosensitive ion channel porin domain JH254_10265 PF12794 Mechanosensitive ion channel inner membrane domain 1 JH254_10270 PF02554 Carbon starvation protein CstA JH254_10275 PF00072 Response regulator receiver domain JH254_10275 PF04397 LytTr DNA-binding domain JH254_10280 PF07694 5TMR of 5TMR-LYT JH254_10280 PF06580 Histidine kinase JH254_10285 PF00072 Response regulator receiver domain JH254_10290 PF00171 Aldehyde dehydrogenase family JH254_10290 PF00465 Iron-containing alcohol dehydrogenase JH254_10295 PF01914 MarC family integral membrane protein JH254_10300 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JH254_10305 PF00528 Binding-protein-dependent transport system inner membrane component JH254_10310 PF00528 Binding-protein-dependent transport system inner membrane component JH254_10310 PF12911 N-terminal TM domain of oligopeptide transport permease C JH254_10315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JH254_10315 PF00005 ABC transporter JH254_10320 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JH254_10320 PF00005 ABC transporter JH254_10325 PF03741 Integral membrane protein TerC family JH254_10330 PF00842 Alanine racemase, C-terminal domain JH254_10330 PF01168 Alanine racemase, N-terminal domain JH254_10340 PF00375 Sodium:dicarboxylate symporter family JH254_10360 PF01979 Amidohydrolase family JH254_10370 PF00672 HAMP domain JH254_10370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JH254_10375 PF01230 HIT domain JH254_10410 PF02355 Protein export membrane protein JH254_10410 PF13721 SecD export protein N-terminal TM region JH254_10410 PF07549 SecD/SecF GG Motif JH254_10415 PF02355 Protein export membrane protein JH254_10415 PF07549 SecD/SecF GG Motif JH254_10420 PF13426 PAS domain JH254_10420 PF08447 PAS fold JH254_10420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JH254_10430 PF05661 Protein of unknown function (DUF808) JH254_10435 PF01432 Peptidase family M3 JH254_10435 PF08439 Oligopeptidase F JH254_10440 PF08439 Oligopeptidase F JH254_10440 PF01432 Peptidase family M3 JH254_10445 PF05728 Uncharacterised protein family (UPF0227) JH254_10450 PF07992 Pyridine nucleotide-disulphide oxidoreductase JH254_10460 PF01906 Putative heavy-metal-binding JH254_10465 PF00884 Sulfatase JH254_10475 PF00696 Amino acid kinase family JH254_10475 PF01842 ACT domain JH254_10480 PF00583 Acetyltransferase (GNAT) family JH254_10480 PF00696 Amino acid kinase family JH254_10485 PF01625 Peptide methionine sulfoxide reductase JH254_10520 PF03466 LysR substrate binding domain JH254_10520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_10525 PF02652 L-lactate permease JH254_10530 PF02754 Cysteine-rich domain JH254_10535 PF11870 Domain of unknown function (DUF3390) JH254_10535 PF13183 4Fe-4S dicluster domain JH254_10535 PF02589 LUD domain JH254_10540 PF02589 LUD domain JH254_10545 PF01565 FAD binding domain JH254_10545 PF02913 FAD linked oxidases, C-terminal domain JH254_10560 PF01609 Transposase DDE domain JH254_10560 PF05598 Transposase domain (DUF772) JH254_10565 PF13358 DDE superfamily endonuclease JH254_10565 PF13592 Winged helix-turn helix JH254_10580 PF13358 DDE superfamily endonuclease JH254_10580 PF13592 Winged helix-turn helix JH254_10605 PF02254 TrkA-N domain JH254_10605 PF00999 Sodium/hydrogen exchanger family JH254_10610 PF02525 Flavodoxin-like fold JH254_10615 PF03466 LysR substrate binding domain JH254_10615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_10620 PF00106 short chain dehydrogenase JH254_10635 PF00326 Prolyl oligopeptidase family JH254_10635 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JH254_10640 PF16868 NMT1-like family JH254_10655 PF07947 YhhN family JH254_10660 PF07690 Major Facilitator Superfamily JH254_10665 PF13533 Biotin-lipoyl like JH254_10670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_10670 PF03466 LysR substrate binding domain JH254_10680 PF00375 Sodium:dicarboxylate symporter family JH254_10685 PF10678 Protein of unknown function (DUF2492) JH254_10690 PF01914 MarC family integral membrane protein JH254_10695 PF03466 LysR substrate binding domain JH254_10695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_10700 PF02416 mttA/Hcf106 family JH254_10710 PF00497 Bacterial extracellular solute-binding proteins, family 3 JH254_10710 PF01464 Transglycosylase SLT domain JH254_10720 PF13091 PLD-like domain JH254_10730 PF00440 Bacterial regulatory proteins, tetR family JH254_10735 PF07226 Protein of unknown function (DUF1422) JH254_10750 PF02881 SRP54-type protein, helical bundle domain JH254_10750 PF00448 SRP54-type protein, GTPase domain JH254_10755 PF00005 ABC transporter JH254_10760 PF18075 FtsX extracellular domain JH254_10765 PF04542 Sigma-70 region 2 JH254_10765 PF00140 Sigma-70 factor, region 1.2 JH254_10765 PF04545 Sigma-70, region 4 JH254_10770 PF00484 Carbonic anhydrase JH254_10775 PF07702 UTRA domain JH254_10775 PF00392 Bacterial regulatory proteins, gntR family JH254_10780 PF01979 Amidohydrolase family JH254_10785 PF00491 Arginase family JH254_10790 PF17392 Urocanase C-terminal domain JH254_10790 PF17391 Urocanase N-terminal domain JH254_10790 PF01175 Urocanase Rossmann-like domain JH254_10795 PF00221 Aromatic amino acid lyase JH254_10800 PF01699 Sodium/calcium exchanger protein JH254_10805 PF00563 EAL domain JH254_10805 PF12792 CSS motif domain associated with EAL JH254_10840 PF00263 Bacterial type II and III secretion system protein JH254_10840 PF03958 Bacterial type II/III secretion system short domain JH254_10860 PF00437 Type II/IV secretion system protein JH254_10860 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JH254_10865 PF00482 Type II secretion system (T2SS), protein F JH254_10880 PF00114 Pilin (bacterial filament) JH254_10880 PF07963 Prokaryotic N-terminal methylation motif JH254_10885 PF07963 Prokaryotic N-terminal methylation motif JH254_10885 PF14245 Type IV pilin PilA JH254_10915 PF04085 rod shape-determining protein MreC JH254_10920 PF04093 rod shape-determining protein MreD JH254_10925 PF02545 Maf-like protein JH254_10930 PF00575 S1 RNA binding domain JH254_10930 PF10150 Ribonuclease E/G family JH254_10935 PF13502 AsmA-like C-terminal region JH254_10935 PF13116 Protein of unknown function JH254_10940 PF00795 Carbon-nitrogen hydrolase JH254_10945 PF01523 Putative modulator of DNA gyrase JH254_10955 PF01914 MarC family integral membrane protein JH254_10960 PF07690 Major Facilitator Superfamily JH254_10970 PF04228 Putative neutral zinc metallopeptidase JH254_10990 PF00999 Sodium/hydrogen exchanger family JH254_10995 PF02965 Vitamin B12 dependent methionine synthase, activation domain JH254_10995 PF00809 Pterin binding enzyme JH254_10995 PF02607 B12 binding domain JH254_10995 PF02310 B12 binding domain JH254_10995 PF02574 Homocysteine S-methyltransferase JH254_11005 PF08443 RimK-like ATP-grasp domain JH254_11005 PF18030 RimK PreATP-grasp domain JH254_11010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_11015 PF00486 Transcriptional regulatory protein, C terminal JH254_11015 PF00072 Response regulator receiver domain JH254_11030 PF13667 ThiC-associated domain JH254_11030 PF01964 Radical SAM ThiC family JH254_11035 PF02581 Thiamine monophosphate synthase JH254_11040 PF00899 ThiF family JH254_11050 PF05690 Thiazole biosynthesis protein ThiG JH254_11055 PF04055 Radical SAM superfamily JH254_11055 PF06968 Biotin and Thiamin Synthesis associated domain JH254_11075 PF00324 Amino acid permease JH254_11085 PF03618 Kinase/pyrophosphorylase JH254_11090 PF00391 PEP-utilising enzyme, mobile domain JH254_11090 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JH254_11090 PF02896 PEP-utilising enzyme, TIM barrel domain JH254_11120 PF03180 NLPA lipoprotein JH254_11130 PF11890 Domain of unknown function (DUF3410) JH254_11130 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JH254_11130 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JH254_11135 PF01118 Semialdehyde dehydrogenase, NAD binding domain JH254_11135 PF02774 Semialdehyde dehydrogenase, dimerisation domain JH254_11145 PF01416 tRNA pseudouridine synthase JH254_11150 PF01039 Carboxyl transferase domain JH254_11150 PF17848 Acetyl-coA carboxylase zinc finger domain JH254_11155 PF08245 Mur ligase middle domain JH254_11155 PF02875 Mur ligase family, glutamate ligase domain JH254_11160 PF05036 Sporulation related domain JH254_11165 PF04358 DsrC like protein JH254_11170 PF12805 FUSC-like inner membrane protein yccS JH254_11175 PF01027 Inhibitor of apoptosis-promoting Bax1 JH254_11185 PF07715 TonB-dependent Receptor Plug Domain JH254_11185 PF00593 TonB dependent receptor JH254_11185 PF07660 Secretin and TonB N terminus short domain JH254_11195 PF04303 PrpF protein JH254_11200 PF00330 Aconitase family (aconitate hydratase) JH254_11200 PF00694 Aconitase C-terminal domain JH254_11205 PF00285 Citrate synthase, C-terminal domain JH254_11220 PF08448 PAS fold JH254_11220 PF00990 Diguanylate cyclase, GGDEF domain JH254_11225 PF00849 RNA pseudouridylate synthase JH254_11235 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JH254_11240 PF04209 homogentisate 1,2-dioxygenase JH254_11250 PF14497 Glutathione S-transferase, C-terminal domain JH254_11250 PF02798 Glutathione S-transferase, N-terminal domain JH254_11265 PF00733 Asparagine synthase JH254_11265 PF13537 Glutamine amidotransferase domain JH254_11275 PF13344 Haloacid dehalogenase-like hydrolase JH254_11280 PF00962 Adenosine/AMP deaminase JH254_11285 PF00107 Zinc-binding dehydrogenase JH254_11285 PF08240 Alcohol dehydrogenase GroES-like domain JH254_11290 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JH254_11295 PF03471 Transporter associated domain JH254_11295 PF03741 Integral membrane protein TerC family JH254_11305 PF02913 FAD linked oxidases, C-terminal domain JH254_11305 PF01565 FAD binding domain JH254_11305 PF13183 4Fe-4S dicluster domain JH254_11315 PF03061 Thioesterase superfamily JH254_11320 PF00270 DEAD/DEAH box helicase JH254_11320 PF03880 DbpA RNA binding domain JH254_11320 PF00271 Helicase conserved C-terminal domain JH254_11335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_11335 PF03466 LysR substrate binding domain JH254_11340 PF07690 Major Facilitator Superfamily JH254_11345 PF03553 Na+/H+ antiporter family JH254_11345 PF13726 Na+-H+ antiporter family JH254_11350 PF00929 Exonuclease JH254_11355 PF00672 HAMP domain JH254_11355 PF12729 Four helix bundle sensory module for signal transduction JH254_11355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JH254_11360 PF00691 OmpA family JH254_11360 PF18393 MotY N-terminal domain JH254_11365 PF00459 Inositol monophosphatase family JH254_11375 PF02798 Glutathione S-transferase, N-terminal domain JH254_11375 PF00043 Glutathione S-transferase, C-terminal domain JH254_11380 PF02798 Glutathione S-transferase, N-terminal domain JH254_11380 PF00043 Glutathione S-transferase, C-terminal domain JH254_11390 PF00528 Binding-protein-dependent transport system inner membrane component JH254_11395 PF12911 N-terminal TM domain of oligopeptide transport permease C JH254_11395 PF00528 Binding-protein-dependent transport system inner membrane component JH254_11400 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JH254_11400 PF00005 ABC transporter JH254_11405 PF07690 Major Facilitator Superfamily JH254_11415 PF05164 Cell division protein ZapA JH254_11420 PF03695 Uncharacterised protein family (UPF0149) JH254_11425 PF01494 FAD binding domain JH254_11430 PF01494 FAD binding domain JH254_11435 PF08669 Glycine cleavage T-protein C-terminal barrel domain JH254_11435 PF01571 Aminomethyltransferase folate-binding domain JH254_11440 PF01597 Glycine cleavage H-protein JH254_11445 PF02347 Glycine cleavage system P-protein JH254_11465 PF07690 Major Facilitator Superfamily JH254_11470 PF13006 Insertion element 4 transposase N-terminal JH254_11470 PF01609 Transposase DDE domain JH254_11475 PF07992 Pyridine nucleotide-disulphide oxidoreductase JH254_11475 PF13192 Thioredoxin domain JH254_11480 PF00578 AhpC/TSA family JH254_11480 PF10417 C-terminal domain of 1-Cys peroxiredoxin JH254_11485 PF00571 CBS domain JH254_11490 PF02547 Queuosine biosynthesis protein JH254_11495 PF01702 Queuine tRNA-ribosyltransferase JH254_11500 PF02699 Preprotein translocase subunit JH254_11505 PF07549 SecD/SecF GG Motif JH254_11505 PF13721 SecD export protein N-terminal TM region JH254_11505 PF02355 Protein export membrane protein JH254_11510 PF07549 SecD/SecF GG Motif JH254_11510 PF02355 Protein export membrane protein JH254_11515 PF00581 Rhodanese-like domain JH254_11520 PF07719 Tetratricopeptide repeat JH254_11520 PF13181 Tetratricopeptide repeat JH254_11525 PF01136 Peptidase family U32 JH254_11530 PF01136 Peptidase family U32 JH254_11535 PF02036 SCP-2 sterol transfer family JH254_11540 PF00588 SpoU rRNA Methylase family JH254_11545 PF02082 Transcriptional regulator JH254_11550 PF00266 Aminotransferase class-V JH254_11555 PF01592 NifU-like N terminal domain JH254_11560 PF01521 Iron-sulphur cluster biosynthesis JH254_11565 PF00226 DnaJ domain JH254_11565 PF07743 HSCB C-terminal oligomerisation domain JH254_11570 PF00012 Hsp70 protein JH254_11575 PF00111 2Fe-2S iron-sulfur cluster binding domain JH254_11580 PF12404 Peptidase JH254_11580 PF00883 Cytosol aminopeptidase family, catalytic domain JH254_11585 PF00883 Cytosol aminopeptidase family, catalytic domain JH254_11585 PF12404 Peptidase JH254_11590 PF00334 Nucleoside diphosphate kinase JH254_11595 PF04055 Radical SAM superfamily JH254_11605 PF13464 Domain of unknown function (DUF4115) JH254_11610 PF04551 GcpE protein JH254_11615 PF13393 Histidyl-tRNA synthetase JH254_11615 PF03129 Anticodon binding domain JH254_11620 PF09976 Tetratricopeptide repeat-like domain JH254_11625 PF13360 PQQ-like domain JH254_11630 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JH254_11630 PF01926 50S ribosome-binding GTPase JH254_11635 PF07191 zinc-ribbons JH254_11640 PF00497 Bacterial extracellular solute-binding proteins, family 3 JH254_11640 PF01464 Transglycosylase SLT domain JH254_11645 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal JH254_11645 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JH254_11645 PF02769 AIR synthase related protein, C-terminal domain JH254_11650 PF00361 Proton-conducting membrane transporter JH254_11655 PF00361 Proton-conducting membrane transporter JH254_11660 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JH254_11660 PF00361 Proton-conducting membrane transporter JH254_11665 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JH254_11670 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 JH254_11675 PF12838 4Fe-4S dicluster domain JH254_11680 PF00146 NADH dehydrogenase JH254_11685 PF00384 Molybdopterin oxidoreductase JH254_11685 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JH254_11685 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JH254_11690 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JH254_11690 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JH254_11700 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit JH254_11700 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit JH254_11705 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit JH254_11710 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 JH254_11715 PF00691 OmpA family JH254_11715 PF13677 Membrane MotB of proton-channel complex MotA/MotB JH254_11720 PF01618 MotA/TolQ/ExbB proton channel family JH254_11730 PF00239 Resolvase, N terminal domain JH254_11730 PF02796 Helix-turn-helix domain of resolvase JH254_11760 PF04536 TPM domain JH254_11770 PF03411 Penicillin-insensitive murein endopeptidase JH254_11780 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JH254_11785 PF00248 Aldo/keto reductase family JH254_11800 PF01212 Beta-eliminating lyase JH254_11810 PF00486 Transcriptional regulatory protein, C terminal JH254_11810 PF00072 Response regulator receiver domain JH254_11815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_11815 PF03466 LysR substrate binding domain JH254_11825 PF00990 Diguanylate cyclase, GGDEF domain JH254_11825 PF03707 Bacterial signalling protein N terminal repeat JH254_11825 PF13188 PAS domain JH254_11825 PF00563 EAL domain JH254_11830 PF03806 AbgT putative transporter family JH254_11835 PF00881 Nitroreductase family JH254_11850 PF07690 Major Facilitator Superfamily JH254_11855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_11855 PF03466 LysR substrate binding domain JH254_11860 PF00925 GTP cyclohydrolase II JH254_11865 PF02224 Cytidylate kinase JH254_11870 PF00575 S1 RNA binding domain JH254_11875 PF00216 Bacterial DNA-binding protein JH254_11885 PF18073 Rubredoxin metal binding domain JH254_11890 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JH254_11905 PF06508 Queuosine biosynthesis protein QueC JH254_11910 PF04055 Radical SAM superfamily JH254_11915 PF12843 Putative quorum-sensing-regulated virulence factor JH254_11920 PF01923 Cobalamin adenosyltransferase JH254_11925 PF00816 H-NS histone family JH254_11935 PF13183 4Fe-4S dicluster domain JH254_11935 PF02754 Cysteine-rich domain JH254_11945 PF00890 FAD binding domain JH254_11950 PF01266 FAD dependent oxidoreductase JH254_11950 PF04324 BFD-like [2Fe-2S] binding domain JH254_11955 PF02810 SEC-C motif JH254_11960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JH254_11960 PF00672 HAMP domain JH254_11960 PF17200 Single Cache domain 2 JH254_11965 PF01047 MarR family JH254_11965 PF00480 ROK family JH254_11970 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JH254_11970 PF00989 PAS fold JH254_11970 PF17203 Single cache domain 3 JH254_11970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_11975 PF00072 Response regulator receiver domain JH254_11980 PF01970 Tripartite tricarboxylate transporter TctA family JH254_11990 PF03401 Tripartite tricarboxylate transporter family receptor JH254_12000 PF06826 Predicted Permease Membrane Region JH254_12000 PF02080 TrkA-C domain JH254_12010 PF04851 Type III restriction enzyme, res subunit JH254_12010 PF00271 Helicase conserved C-terminal domain JH254_12010 PF12344 Ultra-violet resistance protein B JH254_12010 PF17757 UvrB interaction domain JH254_12010 PF02151 UvrB/uvrC motif JH254_12020 PF09335 SNARE associated Golgi protein JH254_12025 PF02600 Disulfide bond formation protein DsbB JH254_12030 PF06450 Bacterial Na+/H+ antiporter B (NhaB) JH254_12035 PF00392 Bacterial regulatory proteins, gntR family JH254_12035 PF07840 FadR C-terminal domain JH254_12040 PF04293 SpoVR like protein JH254_12045 PF04285 Protein of unknown function (DUF444) JH254_12050 PF08298 PrkA AAA domain JH254_12050 PF06798 PrkA serine protein kinase C-terminal domain JH254_12055 PF00271 Helicase conserved C-terminal domain JH254_12055 PF09382 RQC domain JH254_12055 PF00270 DEAD/DEAH box helicase JH254_12055 PF16124 RecQ zinc-binding JH254_12055 PF00570 HRDC domain JH254_12060 PF00375 Sodium:dicarboxylate symporter family JH254_12065 PF03222 Tryptophan/tyrosine permease family JH254_12070 PF00293 NUDIX domain JH254_12075 PF04715 Anthranilate synthase component I, N terminal region JH254_12075 PF00425 chorismate binding enzyme JH254_12100 PF00343 Carbohydrate phosphorylase JH254_12110 PF00939 Sodium:sulfate symporter transmembrane region JH254_12115 PF00085 Thioredoxin JH254_12120 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JH254_12120 PF00072 Response regulator receiver domain JH254_12120 PF01627 Hpt domain JH254_12120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_12120 PF00672 HAMP domain JH254_12120 PF00512 His Kinase A (phospho-acceptor) domain JH254_12125 PF00664 ABC transporter transmembrane region JH254_12125 PF00005 ABC transporter JH254_12130 PF00664 ABC transporter transmembrane region JH254_12130 PF00005 ABC transporter JH254_12150 PF01575 MaoC like domain JH254_12155 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus JH254_12155 PF00561 alpha/beta hydrolase fold JH254_12175 PF08543 Phosphomethylpyrimidine kinase JH254_12180 PF03992 Antibiotic biosynthesis monooxygenase JH254_12185 PF13673 Acetyltransferase (GNAT) domain JH254_12195 PF01928 CYTH domain JH254_12205 PF02694 Uncharacterised BCR, YnfA/UPF0060 family JH254_12215 PF13673 Acetyltransferase (GNAT) domain JH254_12225 PF00271 Helicase conserved C-terminal domain JH254_12225 PF00270 DEAD/DEAH box helicase JH254_12230 PF00255 Glutathione peroxidase JH254_12240 PF07478 D-ala D-ala ligase C-terminus JH254_12240 PF01820 D-ala D-ala ligase N-terminus JH254_12245 PF03942 DTW domain JH254_12265 PF01925 Sulfite exporter TauE/SafE JH254_12270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_12270 PF03466 LysR substrate binding domain JH254_12285 PF11398 Protein of unknown function (DUF2813) JH254_12310 PF01047 MarR family JH254_12320 PF01156 Inosine-uridine preferring nucleoside hydrolase JH254_12330 PF03466 LysR substrate binding domain JH254_12330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_12335 PF02627 Carboxymuconolactone decarboxylase family JH254_12340 PF06481 COX Aromatic Rich Motif JH254_12340 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JH254_12345 PF00115 Cytochrome C and Quinol oxidase polypeptide I JH254_12350 PF00510 Cytochrome c oxidase subunit III JH254_12355 PF03626 Prokaryotic Cytochrome C oxidase subunit IV JH254_12360 PF01040 UbiA prenyltransferase family JH254_12365 PF07690 Major Facilitator Superfamily JH254_12370 PF07237 Protein of unknown function (DUF1428) JH254_12375 PF02668 Taurine catabolism dioxygenase TauD, TfdA family JH254_12380 PF00528 Binding-protein-dependent transport system inner membrane component JH254_12385 PF00005 ABC transporter JH254_12390 PF04069 Substrate binding domain of ABC-type glycine betaine transport system JH254_12400 PF03466 LysR substrate binding domain JH254_12400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_12420 PF07804 HipA-like C-terminal domain JH254_12420 PF13657 HipA N-terminal domain JH254_12425 PF01381 Helix-turn-helix JH254_12435 PF00290 Tryptophan synthase alpha chain JH254_12440 PF00291 Pyridoxal-phosphate dependent enzyme JH254_12445 PF00218 Indole-3-glycerol phosphate synthase JH254_12445 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase JH254_12450 PF02885 Glycosyl transferase family, helical bundle domain JH254_12450 PF00591 Glycosyl transferase family, a/b domain JH254_12455 PF00117 Glutamine amidotransferase class-I JH254_12455 PF00591 Glycosyl transferase family, a/b domain JH254_12455 PF02885 Glycosyl transferase family, helical bundle domain JH254_12465 PF04715 Anthranilate synthase component I, N terminal region JH254_12465 PF00425 chorismate binding enzyme JH254_12470 PF02811 PHP domain JH254_12475 PF01300 Telomere recombination JH254_12480 PF02616 Segregation and condensation protein ScpA JH254_12485 PF04079 Segregation and condensation complex subunit ScpB JH254_12490 PF01479 S4 domain JH254_12490 PF00849 RNA pseudouridylate synthase JH254_12510 PF08361 MAATS-type transcriptional repressor, C-terminal region JH254_12510 PF00440 Bacterial regulatory proteins, tetR family JH254_12515 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JH254_12515 PF00529 HlyD membrane-fusion protein of T1SS JH254_12520 PF00873 AcrB/AcrD/AcrF family JH254_12525 PF02321 Outer membrane efflux protein JH254_12555 PF01695 IstB-like ATP binding protein JH254_12560 PF00665 Integrase core domain JH254_12575 PF01609 Transposase DDE domain JH254_12610 PF01740 STAS domain JH254_12610 PF00916 Sulfate permease family JH254_12625 PF14403 Circularly permuted ATP-grasp type 2 JH254_12630 PF04168 A predicted alpha-helical domain with a conserved ER motif. JH254_12630 PF14403 Circularly permuted ATP-grasp type 2 JH254_12660 PF03239 Iron permease FTR1 family JH254_12665 PF01593 Flavin containing amine oxidoreductase JH254_12685 PF07690 Major Facilitator Superfamily JH254_12695 PF03600 Citrate transporter JH254_12710 PF00005 ABC transporter JH254_12715 PF12704 MacB-like periplasmic core domain JH254_12715 PF02687 FtsX-like permease family JH254_12735 PF00132 Bacterial transferase hexapeptide (six repeats) JH254_12740 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JH254_12740 PF01612 3'-5' exonuclease JH254_12740 PF00476 DNA polymerase family A JH254_12740 PF01367 5'-3' exonuclease, C-terminal SAM fold JH254_12750 PF06005 Cell division protein ZapB JH254_12760 PF06426 Serine acetyltransferase, N-terminal JH254_12760 PF00132 Bacterial transferase hexapeptide (six repeats) JH254_12765 PF01545 Cation efflux family JH254_12765 PF16916 Dimerisation domain of Zinc Transporter JH254_12770 PF00072 Response regulator receiver domain JH254_12770 PF00486 Transcriptional regulatory protein, C terminal JH254_12775 PF16527 Two-component sensor protein CpxA, periplasmic domain JH254_12775 PF00672 HAMP domain JH254_12775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_12775 PF00512 His Kinase A (phospho-acceptor) domain JH254_12780 PF00588 SpoU rRNA Methylase family JH254_12785 PF01554 MatE JH254_12790 PF02630 SCO1/SenC JH254_12800 PF00717 Peptidase S24-like JH254_12800 PF01726 LexA DNA binding domain JH254_12805 PF01553 Acyltransferase JH254_12810 PF01040 UbiA prenyltransferase family JH254_12815 PF04345 Chorismate lyase JH254_12820 PF03748 Flagellar basal body-associated protein FliL JH254_12850 PF04932 O-Antigen ligase JH254_12855 PF13439 Glycosyltransferase Family 4 JH254_12860 PF01370 NAD dependent epimerase/dehydratase family JH254_12865 PF00440 Bacterial regulatory proteins, tetR family JH254_12865 PF08360 QacR-like protein, C-terminal region JH254_12870 PF00155 Aminotransferase class I and II JH254_12875 PF00107 Zinc-binding dehydrogenase JH254_12875 PF08240 Alcohol dehydrogenase GroES-like domain JH254_12880 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JH254_12885 PF03707 Bacterial signalling protein N terminal repeat JH254_12885 PF00990 Diguanylate cyclase, GGDEF domain JH254_12885 PF00563 EAL domain JH254_12890 PF13361 UvrD-like helicase C-terminal domain JH254_12890 PF00580 UvrD/REP helicase N-terminal domain JH254_12895 PF00266 Aminotransferase class-V JH254_12900 PF02657 Fe-S metabolism associated domain JH254_12905 PF00899 ThiF family JH254_12940 PF03544 Gram-negative bacterial TonB protein C-terminal JH254_12945 PF02472 Biopolymer transport protein ExbD/TolR JH254_12950 PF01618 MotA/TolQ/ExbB proton channel family JH254_12955 PF01618 MotA/TolQ/ExbB proton channel family JH254_12965 PF03472 Autoinducer binding domain JH254_12965 PF00196 Bacterial regulatory proteins, luxR family JH254_12970 PF01380 SIS domain JH254_12975 PF08220 DeoR-like helix-turn-helix domain JH254_12975 PF00455 DeoR C terminal sensor domain JH254_12980 PF00072 Response regulator receiver domain JH254_12980 PF00486 Transcriptional regulatory protein, C terminal JH254_12985 PF00672 HAMP domain JH254_12985 PF00512 His Kinase A (phospho-acceptor) domain JH254_12985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_12990 PF00905 Penicillin binding protein transpeptidase domain JH254_12995 PF06123 Inner membrane protein CreD JH254_13000 PF12804 MobA-like NTP transferase domain JH254_13000 PF14602 Hexapeptide repeat of succinyl-transferase JH254_13000 PF00132 Bacterial transferase hexapeptide (six repeats) JH254_13005 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain JH254_13005 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JH254_13010 PF02874 ATP synthase alpha/beta family, beta-barrel domain JH254_13010 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JH254_13015 PF00231 ATP synthase JH254_13020 PF02874 ATP synthase alpha/beta family, beta-barrel domain JH254_13020 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JH254_13020 PF00306 ATP synthase alpha/beta chain, C terminal domain JH254_13025 PF00213 ATP synthase delta (OSCP) subunit JH254_13030 PF00430 ATP synthase B/B' CF(0) JH254_13035 PF00137 ATP synthase subunit C JH254_13040 PF00119 ATP synthase A chain JH254_13050 PF02195 ParB-like nuclease domain JH254_13050 PF17762 HTH domain found in ParB protein JH254_13055 PF13614 AAA domain JH254_13060 PF02527 rRNA small subunit methyltransferase G JH254_13065 PF01134 Glucose inhibited division protein A JH254_13065 PF13932 GidA associated domain JH254_13070 PF00258 Flavodoxin JH254_13075 PF07715 TonB-dependent Receptor Plug Domain JH254_13075 PF00593 TonB dependent receptor JH254_13080 PF00005 ABC transporter JH254_13085 PF00005 ABC transporter JH254_13090 PF01497 Periplasmic binding protein JH254_13095 PF01032 FecCD transport family JH254_13100 PF01926 50S ribosome-binding GTPase JH254_13100 PF10396 GTP-binding protein TrmE N-terminus JH254_13100 PF12631 MnmE helical domain JH254_13105 PF14849 YidC periplasmic domain JH254_13105 PF02096 60Kd inner membrane protein JH254_13110 PF01809 Putative membrane protein insertion efficiency factor JH254_13115 PF00825 Ribonuclease P JH254_13120 PF00468 Ribosomal protein L34 JH254_13135 PF00501 AMP-binding enzyme JH254_13135 PF13193 AMP-binding enzyme C-terminal domain JH254_13135 PF00668 Condensation domain JH254_13135 PF00550 Phosphopantetheine attachment site JH254_13135 PF00975 Thioesterase domain JH254_13140 PF01497 Periplasmic binding protein JH254_13145 PF17837 4'-phosphopantetheinyl transferase N-terminal domain JH254_13145 PF01648 4'-phosphopantetheinyl transferase superfamily JH254_13150 PF00005 ABC transporter JH254_13155 PF01032 FecCD transport family JH254_13160 PF01032 FecCD transport family JH254_13165 PF00593 TonB dependent receptor JH254_13165 PF07715 TonB-dependent Receptor Plug Domain JH254_13180 PF11143 Protein of unknown function (DUF2919) JH254_13185 PF01544 CorA-like Mg2+ transporter protein JH254_13195 PF01012 Electron transfer flavoprotein domain JH254_13200 PF01012 Electron transfer flavoprotein domain JH254_13200 PF00766 Electron transfer flavoprotein FAD-binding domain JH254_13205 PF00266 Aminotransferase class-V JH254_13210 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JH254_13215 PF00793 DAHP synthetase I family JH254_13220 PF03741 Integral membrane protein TerC family JH254_13230 PF08891 YfcL protein JH254_13235 PF00501 AMP-binding enzyme JH254_13240 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JH254_13240 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region JH254_13245 PF04172 LrgB-like family JH254_13250 PF03788 LrgA family JH254_13265 PF00929 Exonuclease JH254_13265 PF08411 Exonuclease C-terminal JH254_13270 PF00149 Calcineurin-like phosphoesterase JH254_13275 PF09924 Uncharacterised conserved protein (DUF2156) JH254_13275 PF03706 Lysylphosphatidylglycerol synthase TM region JH254_13285 PF00497 Bacterial extracellular solute-binding proteins, family 3 JH254_13290 PF00795 Carbon-nitrogen hydrolase JH254_13295 PF00155 Aminotransferase class I and II JH254_13300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_13300 PF03466 LysR substrate binding domain JH254_13305 PF11762 L-arabinose isomerase C-terminal domain JH254_13305 PF02610 L-arabinose isomerase JH254_13310 PF00596 Class II Aldolase and Adducin N-terminal domain JH254_13315 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JH254_13320 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JH254_13325 PF00005 ABC transporter JH254_13330 PF02653 Branched-chain amino acid transport system / permease component JH254_13335 PF02311 AraC-like ligand binding domain JH254_13335 PF12833 Helix-turn-helix domain JH254_13340 PF00444 Ribosomal protein L36 JH254_13345 PF01197 Ribosomal protein L31 JH254_13360 PF01863 Protein of unknown function DUF45 JH254_13375 PF03606 C4-dicarboxylate anaerobic carrier JH254_13385 PF05430 S-adenosyl-L-methionine-dependent methyltransferase JH254_13385 PF01266 FAD dependent oxidoreductase JH254_13390 PF00109 Beta-ketoacyl synthase, N-terminal domain JH254_13390 PF02801 Beta-ketoacyl synthase, C-terminal domain JH254_13405 PF00285 Citrate synthase, C-terminal domain JH254_13410 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JH254_13415 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JH254_13420 PF00890 FAD binding domain JH254_13420 PF02910 Fumarate reductase flavoprotein C-term JH254_13425 PF13085 2Fe-2S iron-sulfur cluster binding domain JH254_13430 PF02779 Transketolase, pyrimidine binding domain JH254_13430 PF16078 2-oxoglutarate dehydrogenase N-terminus JH254_13430 PF16870 2-oxoglutarate dehydrogenase C-terminal JH254_13430 PF00676 Dehydrogenase E1 component JH254_13435 PF00364 Biotin-requiring enzyme JH254_13435 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JH254_13435 PF02817 e3 binding domain JH254_13440 PF08442 ATP-grasp domain JH254_13440 PF00549 CoA-ligase JH254_13445 PF02629 CoA binding domain JH254_13445 PF00549 CoA-ligase JH254_13460 PF01521 Iron-sulphur cluster biosynthesis JH254_13470 PF00654 Voltage gated chloride channel JH254_13475 PF00202 Aminotransferase class-III JH254_13490 PF01569 PAP2 superfamily JH254_13500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_13500 PF03466 LysR substrate binding domain JH254_13505 PF00893 Small Multidrug Resistance protein JH254_13510 PF00893 Small Multidrug Resistance protein JH254_13515 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JH254_13520 PF14814 Bifunctional transglycosylase second domain JH254_13520 PF00912 Transglycosylase JH254_13520 PF00905 Penicillin binding protein transpeptidase domain JH254_13525 PF08482 ATP-dependent helicase C-terminal JH254_13525 PF00270 DEAD/DEAH box helicase JH254_13525 PF04408 Helicase associated domain (HA2) JH254_13525 PF00271 Helicase conserved C-terminal domain JH254_13535 PF03749 Sugar fermentation stimulation protein RE domain JH254_13535 PF17746 SfsA N-terminal OB domain JH254_13540 PF01258 Prokaryotic dksA/traR C4-type zinc finger JH254_13545 PF00749 tRNA synthetases class I (E and Q), catalytic domain JH254_13550 PF12627 Probable RNA and SrmB- binding site of polymerase A JH254_13550 PF12626 Polymerase A arginine-rich C-terminus JH254_13550 PF01743 Poly A polymerase head domain JH254_13555 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JH254_13560 PF02548 Ketopantoate hydroxymethyltransferase JH254_13565 PF02569 Pantoate-beta-alanine ligase JH254_13575 PF01061 ABC-2 type transporter JH254_13580 PF00005 ABC transporter JH254_13585 PF00156 Phosphoribosyl transferase domain JH254_13590 PF00440 Bacterial regulatory proteins, tetR family JH254_13595 PF02441 Flavoprotein JH254_13600 PF08245 Mur ligase middle domain JH254_13600 PF02875 Mur ligase family, glutamate ligase domain JH254_13600 PF01225 Mur ligase family, catalytic domain JH254_13605 PF00719 Inorganic pyrophosphatase JH254_13620 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) JH254_13635 PF00005 ABC transporter JH254_13655 PF08447 PAS fold JH254_13655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JH254_13680 PF02080 TrkA-C domain JH254_13680 PF03600 Citrate transporter JH254_13685 PF00009 Elongation factor Tu GTP binding domain JH254_13690 PF01507 Phosphoadenosine phosphosulfate reductase family JH254_13695 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JH254_13695 PF14824 Sirohaem biosynthesis protein central JH254_13695 PF10414 Sirohaem synthase dimerisation region JH254_13700 PF16200 C-terminal region of band_7 JH254_13700 PF01145 SPFH domain / Band 7 family JH254_13705 PF01957 NfeD-like C-terminal, partner-binding JH254_13715 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JH254_13715 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JH254_13720 PF07690 Major Facilitator Superfamily JH254_13725 PF01725 Ham1 family JH254_13730 PF06969 HemN C-terminal domain JH254_13730 PF04055 Radical SAM superfamily JH254_13735 PF03889 Alternative ribosome-rescue factor A JH254_13745 PF13411 MerR HTH family regulatory protein JH254_13750 PF02142 MGS-like domain JH254_13750 PF01808 AICARFT/IMPCHase bienzyme JH254_13755 PF02844 Phosphoribosylglycinamide synthetase, N domain JH254_13755 PF02843 Phosphoribosylglycinamide synthetase, C domain JH254_13755 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JH254_13775 PF00128 Alpha amylase, catalytic domain JH254_13785 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) JH254_13785 PF04851 Type III restriction enzyme, res subunit JH254_13785 PF08463 EcoEI R protein C-terminal JH254_13785 PF00271 Helicase conserved C-terminal domain JH254_13790 PF01420 Type I restriction modification DNA specificity domain JH254_13795 PF02384 N-6 DNA Methylase JH254_13795 PF12161 HsdM N-terminal domain JH254_13805 PF07690 Major Facilitator Superfamily JH254_13810 PF03466 LysR substrate binding domain JH254_13810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_13815 PF04151 Bacterial pre-peptidase C-terminal domain JH254_13815 PF02868 Thermolysin metallopeptidase, alpha-helical domain JH254_13815 PF01447 Thermolysin metallopeptidase, catalytic domain JH254_13815 PF03413 Peptidase propeptide and YPEB domain JH254_13815 PF07504 Fungalysin/Thermolysin Propeptide Motif JH254_13820 PF13302 Acetyltransferase (GNAT) domain JH254_13825 PF13302 Acetyltransferase (GNAT) domain JH254_13835 PF04074 YhcH/YjgK/YiaL JH254_13840 PF00871 Acetokinase family JH254_13845 PF00924 Mechanosensitive ion channel JH254_13850 PF17969 L,D-transpeptidase C-terminal domain JH254_13850 PF03734 L,D-transpeptidase catalytic domain JH254_13855 PF00474 Sodium:solute symporter family JH254_13865 PF13411 MerR HTH family regulatory protein JH254_13900 PF02525 Flavodoxin-like fold JH254_13905 PF03466 LysR substrate binding domain JH254_13905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_13910 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ JH254_13920 PF12848 ABC transporter JH254_13920 PF00005 ABC transporter JH254_13925 PF00478 IMP dehydrogenase / GMP reductase domain JH254_13925 PF00571 CBS domain JH254_13930 PF00267 Gram-negative porin JH254_13935 PF00072 Response regulator receiver domain JH254_13935 PF01584 CheW-like domain JH254_13940 PF13472 GDSL-like Lipase/Acylhydrolase family JH254_13945 PF00005 ABC transporter JH254_13955 PF08338 Domain of unknown function (DUF1731) JH254_13955 PF01370 NAD dependent epimerase/dehydratase family JH254_13960 PF12792 CSS motif domain associated with EAL JH254_13960 PF00563 EAL domain JH254_13965 PF00155 Aminotransferase class I and II JH254_13970 PF04389 Peptidase family M28 JH254_13970 PF01483 Proprotein convertase P-domain JH254_13975 PF02390 Putative methyltransferase JH254_13980 PF04320 Protein with unknown function (DUF469) JH254_13985 PF04960 Glutaminase JH254_13995 PF06004 Bacterial protein of unknown function (DUF903) JH254_14000 PF00005 ABC transporter JH254_14000 PF00664 ABC transporter transmembrane region JH254_14005 PF00561 alpha/beta hydrolase fold JH254_14025 PF06877 Regulator of ribonuclease activity B JH254_14030 PF03707 Bacterial signalling protein N terminal repeat JH254_14030 PF00990 Diguanylate cyclase, GGDEF domain JH254_14030 PF00563 EAL domain JH254_14050 PF09905 DNA-binding protein VF530 JH254_14055 PF02666 Phosphatidylserine decarboxylase JH254_14060 PF03193 RsgA GTPase JH254_14065 PF00929 Exonuclease JH254_14105 PF00313 'Cold-shock' DNA-binding domain JH254_14115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JH254_14115 PF00672 HAMP domain JH254_14120 PF00749 tRNA synthetases class I (E and Q), catalytic domain JH254_14125 PF00749 tRNA synthetases class I (E and Q), catalytic domain JH254_14190 PF00356 Bacterial regulatory proteins, lacI family JH254_14195 PF16353 Domain of unknown function(DUF4981) JH254_14195 PF02837 Glycosyl hydrolases family 2, sugar binding domain JH254_14195 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JH254_14195 PF00703 Glycosyl hydrolases family 2 JH254_14195 PF02929 Beta galactosidase small chain JH254_14200 PF04074 YhcH/YjgK/YiaL JH254_14205 PF13520 Amino acid permease JH254_14210 PF01588 Putative tRNA binding domain JH254_14215 PF13520 Amino acid permease JH254_14220 PF13593 SBF-like CPA transporter family (DUF4137) JH254_14225 PF03781 Sulfatase-modifying factor enzyme 1 JH254_14225 PF12867 DinB superfamily JH254_14240 PF00756 Putative esterase JH254_14245 PF08240 Alcohol dehydrogenase GroES-like domain JH254_14245 PF00107 Zinc-binding dehydrogenase JH254_14250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_14250 PF03466 LysR substrate binding domain JH254_14255 PF02653 Branched-chain amino acid transport system / permease component JH254_14260 PF02653 Branched-chain amino acid transport system / permease component JH254_14265 PF00005 ABC transporter JH254_14270 PF02608 ABC transporter substrate-binding protein PnrA-like JH254_14275 PF13361 UvrD-like helicase C-terminal domain JH254_14275 PF00580 UvrD/REP helicase N-terminal domain JH254_14305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_14305 PF03466 LysR substrate binding domain JH254_14320 PF14001 YdfZ protein JH254_14340 PF03466 LysR substrate binding domain JH254_14340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_14345 PF01810 LysE type translocator JH254_14350 PF06206 CpeT/CpcT family (DUF1001) JH254_14355 PF01810 LysE type translocator JH254_14360 PF12833 Helix-turn-helix domain JH254_14365 PF00892 EamA-like transporter family JH254_14375 PF00171 Aldehyde dehydrogenase family JH254_14380 PF01381 Helix-turn-helix JH254_14380 PF07883 Cupin domain JH254_14385 PF00202 Aminotransferase class-III JH254_14390 PF00171 Aldehyde dehydrogenase family JH254_14395 PF02540 NAD synthase JH254_14395 PF00958 GMP synthase C terminal domain JH254_14395 PF00117 Glutamine amidotransferase class-I JH254_14400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_14400 PF03466 LysR substrate binding domain JH254_14405 PF00294 pfkB family carbohydrate kinase JH254_14410 PF02082 Transcriptional regulator JH254_14425 PF02646 RmuC family JH254_14430 PF02386 Cation transport protein JH254_14435 PF02254 TrkA-N domain JH254_14435 PF02080 TrkA-C domain JH254_14440 PF01189 16S rRNA methyltransferase RsmB/F JH254_14440 PF01029 NusB family JH254_14445 PF02911 Formyl transferase, C-terminal domain JH254_14445 PF00551 Formyl transferase JH254_14450 PF01327 Polypeptide deformylase JH254_14460 PF02481 DNA recombination-mediator protein A JH254_14460 PF17782 DprA winged helix domain JH254_14465 PF04361 Protein of unknown function (DUF494) JH254_14470 PF01396 Topoisomerase DNA binding C4 zinc finger JH254_14475 PF01300 Telomere recombination JH254_14480 PF01218 Coproporphyrinogen III oxidase JH254_14485 PF08501 Shikimate dehydrogenase substrate binding domain JH254_14485 PF01488 Shikimate / quinate 5-dehydrogenase JH254_14485 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JH254_14530 PF05958 tRNA (Uracil-5-)-methyltransferase JH254_14535 PF00486 Transcriptional regulatory protein, C terminal JH254_14535 PF00072 Response regulator receiver domain JH254_14540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_14540 PF00672 HAMP domain JH254_14540 PF00512 His Kinase A (phospho-acceptor) domain JH254_14550 PF00390 Malic enzyme, N-terminal domain JH254_14550 PF03949 Malic enzyme, NAD binding domain JH254_14555 PF11066 Protein of unknown function (DUF2867) JH254_14555 PF13460 NAD(P)H-binding JH254_14560 PF01197 Ribosomal protein L31 JH254_14565 PF18074 Primosomal protein N C-terminal domain JH254_14565 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JH254_14565 PF00271 Helicase conserved C-terminal domain JH254_14565 PF00270 DEAD/DEAH box helicase JH254_14565 PF17764 3′ DNA-binding domain (3′BD) JH254_14570 PF00440 Bacterial regulatory proteins, tetR family JH254_14580 PF00691 OmpA family JH254_14580 PF01389 OmpA-like transmembrane domain JH254_14585 PF00291 Pyridoxal-phosphate dependent enzyme JH254_14585 PF00585 C-terminal regulatory domain of Threonine dehydratase JH254_14590 PF00920 Dehydratase family JH254_14595 PF01063 Amino-transferase class IV JH254_14605 PF00205 Thiamine pyrophosphate enzyme, central domain JH254_14605 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JH254_14605 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JH254_14610 PF13335 Magnesium chelatase, subunit ChlI C-terminal JH254_14610 PF01078 Magnesium chelatase, subunit ChlI JH254_14615 PF01553 Acyltransferase JH254_14620 PF01553 Acyltransferase JH254_14625 PF04463 Protein of unknown function (DUF523) JH254_14635 PF00857 Isochorismatase family JH254_14640 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family JH254_14640 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JH254_14645 PF01323 DSBA-like thioredoxin domain JH254_14650 PF01636 Phosphotransferase enzyme family JH254_14655 PF13746 4Fe-4S dicluster domain JH254_14655 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase JH254_14655 PF12801 4Fe-4S binding domain JH254_14660 PF06288 Protein of unknown function (DUF1040) JH254_14665 PF01590 GAF domain JH254_14665 PF00990 Diguanylate cyclase, GGDEF domain JH254_14665 PF00360 Phytochrome region JH254_14665 PF00563 EAL domain JH254_14670 PF09278 MerR, DNA binding JH254_14670 PF00376 MerR family regulatory protein JH254_14675 PF00403 Heavy-metal-associated domain JH254_14680 PF00156 Phosphoribosyl transferase domain JH254_14685 PF03725 3' exoribonuclease family, domain 2 JH254_14685 PF01138 3' exoribonuclease family, domain 1 JH254_14690 PF03755 YicC-like family, N-terminal region JH254_14690 PF08340 Domain of unknown function (DUF1732) JH254_14700 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) JH254_14705 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JH254_14710 PF00535 Glycosyl transferase family 2 JH254_14715 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JH254_14720 PF01467 Cytidylyltransferase-like JH254_14725 PF04393 Protein of unknown function (DUF535) JH254_14730 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JH254_14730 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JH254_14730 PF06827 Zinc finger found in FPG and IleRS JH254_14740 PF00471 Ribosomal protein L33 JH254_14745 PF00830 Ribosomal L28 family JH254_14750 PF04002 RadC-like JAB domain JH254_14755 PF04127 DNA / pantothenate metabolism flavoprotein JH254_14755 PF02441 Flavoprotein JH254_14760 PF00692 dUTPase JH254_14765 PF00440 Bacterial regulatory proteins, tetR family JH254_14780 PF05552 Conserved TM helix JH254_14780 PF00924 Mechanosensitive ion channel JH254_14790 PF00342 Phosphoglucose isomerase JH254_14795 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain JH254_14795 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain JH254_14800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_14800 PF03466 LysR substrate binding domain JH254_14810 PF00583 Acetyltransferase (GNAT) family JH254_14810 PF13380 CoA binding domain JH254_14810 PF13607 Succinyl-CoA ligase like flavodoxin domain JH254_14825 PF01695 IstB-like ATP binding protein JH254_14835 PF09722 Protein of unknown function (DUF2384) JH254_14840 PF13538 UvrD-like helicase C-terminal domain JH254_14870 PF00436 Single-strand binding protein family JH254_14875 PF00196 Bacterial regulatory proteins, luxR family JH254_14880 PF00005 ABC transporter JH254_14880 PF17755 UvrA DNA-binding domain JH254_14880 PF17760 UvrA interaction domain JH254_14885 PF03922 OmpW family JH254_14890 PF12729 Four helix bundle sensory module for signal transduction JH254_14890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JH254_14890 PF00672 HAMP domain JH254_14905 PF02219 Methylenetetrahydrofolate reductase JH254_14915 PF03594 Benzoate membrane transport protein JH254_14920 PF07883 Cupin domain JH254_14920 PF01381 Helix-turn-helix JH254_14950 PF04363 Protein of unknown function (DUF496) JH254_14960 PF04751 Protein of unknown function (DUF615) JH254_14965 PF01523 Putative modulator of DNA gyrase JH254_14970 PF07219 HemY protein N-terminus JH254_14970 PF07719 Tetratricopeptide repeat JH254_14975 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase JH254_14980 PF02602 Uroporphyrinogen-III synthase HemD JH254_14985 PF03900 Porphobilinogen deaminase, C-terminal domain JH254_14985 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain JH254_14990 PF12633 Adenylate cyclase NT domain JH254_14990 PF01295 Adenylate cyclase, class-I JH254_14995 PF02230 Phospholipase/Carboxylesterase JH254_15000 PF01491 Frataxin-like domain JH254_15010 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JH254_15010 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JH254_15015 PF01678 Diaminopimelate epimerase JH254_15025 PF00589 Phage integrase family JH254_15025 PF02899 Phage integrase, N-terminal SAM-like domain JH254_15030 PF13419 Haloacid dehalogenase-like hydrolase JH254_15040 PF07722 Peptidase C26 JH254_15055 PF04307 LexA-binding, inner membrane-associated putative hydrolase JH254_15060 PF02464 Competence-damaged protein JH254_15060 PF00994 Probable molybdopterin binding domain JH254_15065 PF00013 KH domain JH254_15065 PF12072 Domain of unknown function (DUF3552) JH254_15065 PF01966 HD domain JH254_15070 PF04204 Homoserine O-succinyltransferase JH254_15080 PF01037 Lrp/AsnC ligand binding domain JH254_15100 PF03079 ARD/ARD' family JH254_15110 PF00860 Permease family JH254_15115 PF02733 Dak1 domain JH254_15120 PF02734 DAK2 domain JH254_15125 PF00391 PEP-utilising enzyme, mobile domain JH254_15125 PF05524 PEP-utilising enzyme, N-terminal JH254_15125 PF00381 PTS HPr component phosphorylation site JH254_15125 PF03610 PTS system fructose IIA component JH254_15130 PF00158 Sigma-54 interaction domain JH254_15130 PF02954 Bacterial regulatory protein, Fis family JH254_15130 PF00989 PAS fold JH254_15135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_15135 PF03466 LysR substrate binding domain JH254_15140 PF04371 Porphyromonas-type peptidyl-arginine deiminase JH254_15150 PF13416 Bacterial extracellular solute-binding protein JH254_15160 PF04371 Porphyromonas-type peptidyl-arginine deiminase JH254_15165 PF00106 short chain dehydrogenase JH254_15170 PF01594 AI-2E family transporter JH254_15175 PF00293 NUDIX domain JH254_15195 PF06628 Catalase-related immune-responsive JH254_15195 PF00199 Catalase JH254_15200 PF00583 Acetyltransferase (GNAT) family JH254_15220 PF00072 Response regulator receiver domain JH254_15220 PF00990 Diguanylate cyclase, GGDEF domain JH254_15230 PF08402 TOBE domain JH254_15230 PF00005 ABC transporter JH254_15240 PF00528 Binding-protein-dependent transport system inner membrane component JH254_15255 PF00392 Bacterial regulatory proteins, gntR family JH254_15255 PF07702 UTRA domain JH254_15265 PF03466 LysR substrate binding domain JH254_15265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_15275 PF02678 Pirin JH254_15275 PF17954 Quercetinase C-terminal cupin domain JH254_15280 PF07681 DoxX JH254_15285 PF17946 RecC C-terminal domain JH254_15290 PF12705 PD-(D/E)XK nuclease superfamily JH254_15290 PF00580 UvrD/REP helicase N-terminal domain JH254_15290 PF13361 UvrD-like helicase C-terminal domain JH254_15295 PF13538 UvrD-like helicase C-terminal domain JH254_15305 PF09190 DALR domain JH254_15305 PF01406 tRNA synthetases class I (C) catalytic domain JH254_15310 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JH254_15320 PF00909 Ammonium Transporter Family JH254_15325 PF00543 Nitrogen regulatory protein P-II JH254_15330 PF08448 PAS fold JH254_15330 PF00990 Diguanylate cyclase, GGDEF domain JH254_15340 PF00672 HAMP domain JH254_15340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JH254_15350 PF00072 Response regulator receiver domain JH254_15350 PF00486 Transcriptional regulatory protein, C terminal JH254_15355 PF00672 HAMP domain JH254_15355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_15355 PF00512 His Kinase A (phospho-acceptor) domain JH254_15360 PF00313 'Cold-shock' DNA-binding domain JH254_15425 PF03747 ADP-ribosylglycohydrolase JH254_15430 PF03747 ADP-ribosylglycohydrolase JH254_15460 PF01695 IstB-like ATP binding protein JH254_15470 PF01196 Ribosomal protein L17 JH254_15475 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JH254_15475 PF01000 RNA polymerase Rpb3/RpoA insert domain JH254_15475 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JH254_15480 PF00163 Ribosomal protein S4/S9 N-terminal domain JH254_15480 PF01479 S4 domain JH254_15485 PF00411 Ribosomal protein S11 JH254_15490 PF00416 Ribosomal protein S13/S18 JH254_15495 PF00444 Ribosomal protein L36 JH254_15500 PF00344 SecY translocase JH254_15505 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JH254_15510 PF00327 Ribosomal protein L30p/L7e JH254_15515 PF00333 Ribosomal protein S5, N-terminal domain JH254_15515 PF03719 Ribosomal protein S5, C-terminal domain JH254_15520 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JH254_15525 PF00347 Ribosomal protein L6 JH254_15530 PF00410 Ribosomal protein S8 JH254_15535 PF00253 Ribosomal protein S14p/S29e JH254_15540 PF00281 Ribosomal protein L5 JH254_15540 PF00673 ribosomal L5P family C-terminus JH254_15545 PF00467 KOW motif JH254_15545 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JH254_15550 PF00238 Ribosomal protein L14p/L23e JH254_15555 PF00366 Ribosomal protein S17 JH254_15560 PF00831 Ribosomal L29 protein JH254_15565 PF00252 Ribosomal protein L16p/L10e JH254_15570 PF07650 KH domain JH254_15570 PF00189 Ribosomal protein S3, C-terminal domain JH254_15575 PF00237 Ribosomal protein L22p/L17e JH254_15580 PF00203 Ribosomal protein S19 JH254_15585 PF00181 Ribosomal Proteins L2, RNA binding domain JH254_15585 PF03947 Ribosomal Proteins L2, C-terminal domain JH254_15590 PF00276 Ribosomal protein L23 JH254_15595 PF00573 Ribosomal protein L4/L1 family JH254_15600 PF00297 Ribosomal protein L3 JH254_15605 PF00338 Ribosomal protein S10p/S20e JH254_15615 PF00672 HAMP domain JH254_15615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_15615 PF00512 His Kinase A (phospho-acceptor) domain JH254_15620 PF00072 Response regulator receiver domain JH254_15620 PF00486 Transcriptional regulatory protein, C terminal JH254_15625 PF03449 Transcription elongation factor, N-terminal JH254_15625 PF01272 Transcription elongation factor, GreA/GreB, C-term JH254_15630 PF17674 HHH domain JH254_15630 PF00575 S1 RNA binding domain JH254_15630 PF09371 Tex-like protein N-terminal domain JH254_15630 PF16921 Tex protein YqgF-like domain JH254_15645 PF00561 alpha/beta hydrolase fold JH254_15650 PF00156 Phosphoribosyl transferase domain JH254_15655 PF01521 Iron-sulphur cluster biosynthesis JH254_15655 PF01106 NifU-like domain JH254_15660 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JH254_15660 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JH254_15665 PF02556 Preprotein translocase subunit SecB JH254_15670 PF00581 Rhodanese-like domain JH254_15675 PF06415 BPG-independent PGAM N-terminus (iPGM_N) JH254_15675 PF01676 Metalloenzyme superfamily JH254_15680 PF01551 Peptidase family M23 JH254_15690 PF00356 Bacterial regulatory proteins, lacI family JH254_15690 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JH254_15705 PF01081 KDPG and KHG aldolase JH254_15710 PF00920 Dehydratase family JH254_15715 PF01202 Shikimate kinase JH254_15720 PF02447 GntP family permease JH254_15725 PF13091 PLD-like domain JH254_15730 PF17191 RecG wedge domain JH254_15730 PF00270 DEAD/DEAH box helicase JH254_15730 PF00271 Helicase conserved C-terminal domain JH254_15740 PF00583 Acetyltransferase (GNAT) family JH254_15740 PF09500 Putative thioesterase (yiiD_Cterm) JH254_15750 PF02580 D-Tyr-tRNA(Tyr) deacylase JH254_15755 PF03631 Virulence factor BrkB JH254_15760 PF00679 Elongation factor G C-terminus JH254_15760 PF00009 Elongation factor Tu GTP binding domain JH254_15760 PF03144 Elongation factor Tu domain 2 JH254_15765 PF00120 Glutamine synthetase, catalytic domain JH254_15765 PF03951 Glutamine synthetase, beta-Grasp domain JH254_15775 PF00512 His Kinase A (phospho-acceptor) domain JH254_15775 PF00989 PAS fold JH254_15775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_15780 PF00158 Sigma-54 interaction domain JH254_15780 PF02954 Bacterial regulatory protein, Fis family JH254_15780 PF00072 Response regulator receiver domain JH254_15785 PF00962 Adenosine/AMP deaminase JH254_15790 PF04055 Radical SAM superfamily JH254_15790 PF06969 HemN C-terminal domain JH254_15795 PF10675 Protein of unknown function (DUF2489) JH254_15800 PF04220 Der GTPase activator (YihI) JH254_15865 PF03466 LysR substrate binding domain JH254_15865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_15870 PF12146 Serine aminopeptidase, S33 JH254_15875 PF01738 Dienelactone hydrolase family JH254_15890 PF12706 Beta-lactamase superfamily domain JH254_15895 PF02653 Branched-chain amino acid transport system / permease component JH254_15900 PF02653 Branched-chain amino acid transport system / permease component JH254_15905 PF00005 ABC transporter JH254_15910 PF13407 Periplasmic binding protein domain JH254_15915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_15915 PF03466 LysR substrate binding domain JH254_15930 PF02634 FdhD/NarQ family JH254_15935 PF00384 Molybdopterin oxidoreductase JH254_15940 PF00072 Response regulator receiver domain JH254_15940 PF00990 Diguanylate cyclase, GGDEF domain JH254_15945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_15945 PF03466 LysR substrate binding domain JH254_15950 PF00232 Glycosyl hydrolase family 1 JH254_15960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_15960 PF03466 LysR substrate binding domain JH254_15970 PF00933 Glycosyl hydrolase family 3 N terminal domain JH254_15975 PF00990 Diguanylate cyclase, GGDEF domain JH254_15980 PF01261 Xylose isomerase-like TIM barrel JH254_15985 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JH254_15985 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JH254_15990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_15990 PF03466 LysR substrate binding domain JH254_16000 PF03279 Bacterial lipid A biosynthesis acyltransferase JH254_16005 PF03279 Bacterial lipid A biosynthesis acyltransferase JH254_16015 PF02678 Pirin JH254_16015 PF05726 Pirin C-terminal cupin domain JH254_16020 PF03104 DNA polymerase family B, exonuclease domain JH254_16020 PF00136 DNA polymerase family B JH254_16050 PF01554 MatE JH254_16055 PF06786 Uncharacterised protein family (UPF0253) JH254_16060 PF00677 Lumazine binding domain JH254_16075 PF13419 Haloacid dehalogenase-like hydrolase JH254_16080 PF02222 ATP-grasp domain JH254_16080 PF01370 NAD dependent epimerase/dehydratase family JH254_16085 PF00892 EamA-like transporter family JH254_16090 PF02525 Flavodoxin-like fold JH254_16120 PF12323 Helix-turn-helix domain JH254_16120 PF07282 Putative transposase DNA-binding domain JH254_16120 PF01385 Probable transposase JH254_16125 PF07282 Putative transposase DNA-binding domain JH254_16125 PF12323 Helix-turn-helix domain JH254_16125 PF01385 Probable transposase JH254_16140 PF00563 EAL domain JH254_16140 PF01590 GAF domain JH254_16140 PF00990 Diguanylate cyclase, GGDEF domain JH254_16140 PF00360 Phytochrome region JH254_16160 PF03222 Tryptophan/tyrosine permease family JH254_16165 PF03222 Tryptophan/tyrosine permease family JH254_16170 PF01212 Beta-eliminating lyase JH254_16180 PF12801 4Fe-4S binding domain JH254_16190 PF07992 Pyridine nucleotide-disulphide oxidoreductase JH254_16190 PF18113 Rubredoxin binding C-terminal domain JH254_16195 PF00258 Flavodoxin JH254_16195 PF00301 Rubredoxin JH254_16195 PF00753 Metallo-beta-lactamase superfamily JH254_16200 PF00158 Sigma-54 interaction domain JH254_16200 PF01590 GAF domain JH254_16205 PF00356 Bacterial regulatory proteins, lacI family JH254_16210 PF13458 Periplasmic binding protein JH254_16215 PF02653 Branched-chain amino acid transport system / permease component JH254_16220 PF02653 Branched-chain amino acid transport system / permease component JH254_16220 PF11862 Domain of unknown function (DUF3382) JH254_16225 PF00005 ABC transporter JH254_16225 PF12399 Branched-chain amino acid ATP-binding cassette transporter JH254_16230 PF00005 ABC transporter JH254_16240 PF01810 LysE type translocator JH254_16245 PF00581 Rhodanese-like domain JH254_16250 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease JH254_16250 PF01694 Rhomboid family JH254_16255 PF12262 Bacterial virulence factor lipase N-terminal JH254_16260 PF04380 Membrane fusogenic activity JH254_16265 PF00175 Oxidoreductase NAD-binding domain JH254_16270 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase JH254_16280 PF07497 Rho termination factor, RNA-binding domain JH254_16280 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JH254_16280 PF07498 Rho termination factor, N-terminal domain JH254_16285 PF00085 Thioredoxin JH254_16290 PF00270 DEAD/DEAH box helicase JH254_16290 PF00271 Helicase conserved C-terminal domain JH254_16295 PF02541 Ppx/GppA phosphatase family JH254_16310 PF04445 Putative SAM-dependent methyltransferase JH254_16315 PF00563 EAL domain JH254_16315 PF00990 Diguanylate cyclase, GGDEF domain JH254_16315 PF03707 Bacterial signalling protein N terminal repeat JH254_16320 PF01432 Peptidase family M3 JH254_16325 PF00490 Delta-aminolevulinic acid dehydratase JH254_16330 PF01026 TatD related DNase JH254_16335 PF00902 Sec-independent protein translocase protein (TatC) JH254_16340 PF02416 mttA/Hcf106 family JH254_16345 PF02416 mttA/Hcf106 family JH254_16350 PF03109 ABC1 family JH254_16355 PF02036 SCP-2 sterol transfer family JH254_16360 PF01209 ubiE/COQ5 methyltransferase family JH254_16365 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JH254_16370 PF07969 Amidohydrolase family JH254_16425 PF01810 LysE type translocator JH254_16430 PF07690 Major Facilitator Superfamily JH254_16440 PF00210 Ferritin-like domain JH254_16445 PF05230 MASE2 domain JH254_16445 PF00990 Diguanylate cyclase, GGDEF domain JH254_16450 PF07055 Enoyl reductase FAD binding domain JH254_16450 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase JH254_16450 PF12241 Trans-2-enoyl-CoA reductase catalytic region JH254_16455 PF00582 Universal stress protein family JH254_16460 PF00579 tRNA synthetases class I (W and Y) JH254_16465 PF03466 LysR substrate binding domain JH254_16465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_16485 PF00892 EamA-like transporter family JH254_16500 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JH254_16505 PF00625 Guanylate kinase JH254_16510 PF01192 RNA polymerase Rpb6 JH254_16515 PF02824 TGS domain JH254_16515 PF13291 ACT domain JH254_16515 PF04607 Region found in RelA / SpoT proteins JH254_16520 PF00588 SpoU rRNA Methylase family JH254_16520 PF12105 SpoU, rRNA methylase, C-terminal JH254_16525 PF00132 Bacterial transferase hexapeptide (six repeats) JH254_16530 PF12146 Serine aminopeptidase, S33 JH254_16565 PF00440 Bacterial regulatory proteins, tetR family JH254_16570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JH254_16575 PF00873 AcrB/AcrD/AcrF family JH254_16580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_16580 PF00512 His Kinase A (phospho-acceptor) domain JH254_16580 PF00497 Bacterial extracellular solute-binding proteins, family 3 JH254_16585 PF07992 Pyridine nucleotide-disulphide oxidoreductase JH254_16585 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JH254_16590 PF00392 Bacterial regulatory proteins, gntR family JH254_16590 PF00155 Aminotransferase class I and II JH254_16595 PF00578 AhpC/TSA family JH254_16605 PF03814 Potassium-transporting ATPase A subunit JH254_16615 PF02669 K+-transporting ATPase, c chain JH254_16620 PF02702 Osmosensitive K+ channel His kinase sensor domain JH254_16620 PF13492 GAF domain JH254_16620 PF13493 Domain of unknown function (DUF4118) JH254_16620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_16620 PF00512 His Kinase A (phospho-acceptor) domain JH254_16625 PF00072 Response regulator receiver domain JH254_16625 PF00486 Transcriptional regulatory protein, C terminal JH254_16630 PF07690 Major Facilitator Superfamily JH254_16645 PF00155 Aminotransferase class I and II JH254_16650 PF00011 Hsp20/alpha crystallin family JH254_16655 PF00011 Hsp20/alpha crystallin family JH254_16660 PF12706 Beta-lactamase superfamily domain JH254_16665 PF12833 Helix-turn-helix domain JH254_16665 PF02311 AraC-like ligand binding domain JH254_16675 PF00308 Bacterial dnaA protein JH254_16690 PF00586 AIR synthase related protein, N-terminal domain JH254_16690 PF02769 AIR synthase related protein, C-terminal domain JH254_16695 PF00551 Formyl transferase JH254_16700 PF01784 NIF3 (NGG1p interacting factor 3) JH254_16705 PF00072 Response regulator receiver domain JH254_16705 PF02954 Bacterial regulatory protein, Fis family JH254_16705 PF00158 Sigma-54 interaction domain JH254_16710 PF13188 PAS domain JH254_16710 PF00512 His Kinase A (phospho-acceptor) domain JH254_16710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_16715 PF06490 Flagellar regulatory protein FleQ JH254_16715 PF02954 Bacterial regulatory protein, Fis family JH254_16715 PF00158 Sigma-54 interaction domain JH254_16725 PF01842 ACT domain JH254_16730 PF13089 Polyphosphate kinase N-terminal domain JH254_16730 PF17941 Polyphosphate kinase C-terminal domain 1 JH254_16730 PF13090 Polyphosphate kinase C-terminal domain 2 JH254_16730 PF02503 Polyphosphate kinase middle domain JH254_16735 PF02541 Ppx/GppA phosphatase family JH254_16740 PF01769 Divalent cation transporter JH254_16740 PF00571 CBS domain JH254_16740 PF03448 MgtE intracellular N domain JH254_16750 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JH254_16750 PF07196 Flagellin hook IN motif JH254_16755 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JH254_16755 PF10135 Rod binding protein JH254_16760 PF02119 Flagellar P-ring protein JH254_16765 PF02107 Flagellar L-ring protein JH254_16770 PF00460 Flagella basal body rod protein JH254_16770 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JH254_16775 PF00460 Flagella basal body rod protein JH254_16775 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JH254_16780 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JH254_16780 PF07559 Flagellar basal body protein FlaE JH254_16780 PF00460 Flagella basal body rod protein JH254_16790 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JH254_16790 PF00460 Flagella basal body rod protein JH254_16795 PF00460 Flagella basal body rod protein JH254_16800 PF03705 CheR methyltransferase, all-alpha domain JH254_16800 PF01739 CheR methyltransferase, SAM binding domain JH254_16805 PF01584 CheW-like domain JH254_16805 PF00072 Response regulator receiver domain JH254_16810 PF13144 Chaperone for flagella basal body P-ring formation JH254_16825 PF12850 Calcineurin-like phosphoesterase superfamily domain JH254_16830 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JH254_16840 PF00849 RNA pseudouridylate synthase JH254_16840 PF01479 S4 domain JH254_16845 PF01966 HD domain JH254_16855 PF00892 EamA-like transporter family JH254_16860 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JH254_16885 PF00313 'Cold-shock' DNA-binding domain JH254_16890 PF02817 e3 binding domain JH254_16890 PF00364 Biotin-requiring enzyme JH254_16890 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JH254_16895 PF02780 Transketolase, C-terminal domain JH254_16895 PF02779 Transketolase, pyrimidine binding domain JH254_16900 PF00676 Dehydrogenase E1 component JH254_16905 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family JH254_16915 PF05472 DNA replication terminus site-binding protein (Ter protein) JH254_16920 PF00271 Helicase conserved C-terminal domain JH254_16920 PF00176 SNF2 family N-terminal domain JH254_16920 PF04434 SWIM zinc finger JH254_16925 PF04337 Protein of unknown function, DUF480 JH254_16945 PF04325 Protein of unknown function (DUF465) JH254_16955 PF01554 MatE JH254_16975 PF00291 Pyridoxal-phosphate dependent enzyme JH254_16980 PF00465 Iron-containing alcohol dehydrogenase JH254_16990 PF17932 Tetracyclin repressor-like, C-terminal domain JH254_16990 PF00440 Bacterial regulatory proteins, tetR family JH254_16995 PF00171 Aldehyde dehydrogenase family JH254_17005 PF00877 NlpC/P60 family JH254_17010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_17010 PF03466 LysR substrate binding domain JH254_17030 PF08003 Protein of unknown function (DUF1698) JH254_17035 PF13649 Methyltransferase domain JH254_17040 PF01904 Protein of unknown function DUF72 JH254_17045 PF01336 OB-fold nucleic acid binding domain JH254_17045 PF02938 GAD domain JH254_17045 PF00152 tRNA synthetases class II (D, K and N) JH254_17050 PF01709 Transcriptional regulator JH254_17055 PF08019 Phosphoethanolamine transferase EptA/EptB JH254_17055 PF00884 Sulfatase JH254_17060 PF01047 MarR family JH254_17060 PF00480 ROK family JH254_17065 PF01979 Amidohydrolase family JH254_17070 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JH254_17075 PF00367 phosphotransferase system, EIIB JH254_17075 PF02378 Phosphotransferase system, EIIC JH254_17075 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JH254_17080 PF02838 Glycosyl hydrolase family 20, domain 2 JH254_17080 PF00728 Glycosyl hydrolase family 20, catalytic domain JH254_17080 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain JH254_17080 PF03173 Putative carbohydrate binding domain JH254_17085 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain JH254_17085 PF00749 tRNA synthetases class I (E and Q), catalytic domain JH254_17090 PF01475 Ferric uptake regulator family JH254_17100 PF00258 Flavodoxin JH254_17105 PF01402 Ribbon-helix-helix protein, copG family JH254_17115 PF00561 alpha/beta hydrolase fold JH254_17120 PF03925 SeqA protein C-terminal domain JH254_17120 PF17206 SeqA protein N-terminal domain JH254_17125 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JH254_17125 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JH254_17125 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JH254_17125 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JH254_17135 PF01047 MarR family JH254_17140 PF13406 Transglycosylase SLT domain JH254_17145 PF01066 CDP-alcohol phosphatidyltransferase JH254_17150 PF00005 ABC transporter JH254_17160 PF13416 Bacterial extracellular solute-binding protein JH254_17165 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JH254_17165 PF07992 Pyridine nucleotide-disulphide oxidoreductase JH254_17165 PF00403 Heavy-metal-associated domain JH254_17170 PF02627 Carboxymuconolactone decarboxylase family JH254_17180 PF02074 Carboxypeptidase Taq (M32) metallopeptidase JH254_17205 PF00106 short chain dehydrogenase JH254_17210 PF03573 outer membrane porin, OprD family JH254_17215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JH254_17215 PF00672 HAMP domain JH254_17215 PF02743 Cache domain JH254_17220 PF00892 EamA-like transporter family JH254_17225 PF02447 GntP family permease JH254_17230 PF01370 NAD dependent epimerase/dehydratase family JH254_17235 PF01261 Xylose isomerase-like TIM barrel JH254_17240 PF00596 Class II Aldolase and Adducin N-terminal domain JH254_17245 PF17042 Nucleotide-binding C-terminal domain JH254_17245 PF07005 Sugar-binding N-terminal domain JH254_17250 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JH254_17250 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JH254_17255 PF08220 DeoR-like helix-turn-helix domain JH254_17255 PF00455 DeoR C terminal sensor domain JH254_17265 PF07995 Glucose / Sorbosone dehydrogenase JH254_17270 PF01740 STAS domain JH254_17270 PF00916 Sulfate permease family JH254_17275 PF03976 Polyphosphate kinase 2 (PPK2) JH254_17300 PF00800 Prephenate dehydratase JH254_17300 PF01817 Chorismate mutase type II JH254_17325 PF08349 Protein of unknown function (DUF1722) JH254_17330 PF13411 MerR HTH family regulatory protein JH254_17335 PF00875 DNA photolyase JH254_17335 PF03441 FAD binding domain of DNA photolyase JH254_17345 PF00106 short chain dehydrogenase JH254_17385 PF00210 Ferritin-like domain JH254_17390 PF03063 Prismane/CO dehydrogenase family JH254_17395 PF00042 Globin JH254_17395 PF00175 Oxidoreductase NAD-binding domain JH254_17395 PF00970 Oxidoreductase FAD-binding domain JH254_17400 PF16363 GDP-mannose 4,6 dehydratase JH254_17415 PF00722 Glycosyl hydrolases family 16 JH254_17420 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit JH254_17425 PF00232 Glycosyl hydrolase family 1 JH254_17440 PF00916 Sulfate permease family JH254_17440 PF01740 STAS domain JH254_17465 PF09588 YqaJ-like viral recombinase domain JH254_17485 PF13148 Protein of unknown function (DUF3987) JH254_17495 PF04002 RadC-like JAB domain JH254_17500 PF00012 Hsp70 protein JH254_17510 PF00816 H-NS histone family JH254_17525 PF00589 Phage integrase family JH254_17525 PF13356 Arm DNA-binding domain JH254_17530 PF09308 LuxQ, periplasmic JH254_17530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_17530 PF00512 His Kinase A (phospho-acceptor) domain JH254_17530 PF00072 Response regulator receiver domain JH254_17550 PF10725 Protein of unknown function (DUF2517) JH254_17555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_17555 PF00512 His Kinase A (phospho-acceptor) domain JH254_17555 PF01627 Hpt domain JH254_17555 PF00989 PAS fold JH254_17555 PF00072 Response regulator receiver domain JH254_17555 PF00497 Bacterial extracellular solute-binding proteins, family 3 JH254_17560 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase JH254_17565 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JH254_17565 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JH254_17570 PF02690 Na+/Pi-cotransporter JH254_17580 PF13520 Amino acid permease JH254_17585 PF00324 Amino acid permease JH254_17595 PF00202 Aminotransferase class-III JH254_17600 PF00171 Aldehyde dehydrogenase family JH254_17605 PF01381 Helix-turn-helix JH254_17605 PF07883 Cupin domain JH254_17610 PF01266 FAD dependent oxidoreductase JH254_17635 PF01609 Transposase DDE domain JH254_17635 PF13808 DDE_Tnp_1-associated JH254_17655 PF00990 Diguanylate cyclase, GGDEF domain JH254_17655 PF13185 GAF domain JH254_17690 PF01169 Uncharacterized protein family UPF0016 JH254_17695 PF01253 Translation initiation factor SUI1 JH254_17705 PF07670 Nucleoside recognition JH254_17705 PF07664 Ferrous iron transport protein B C terminus JH254_17705 PF02421 Ferrous iron transport protein B JH254_17705 PF17910 FeoB cytosolic helical domain JH254_17715 PF00437 Type II/IV secretion system protein JH254_17730 PF01032 FecCD transport family JH254_17735 PF00005 ABC transporter JH254_17740 PF00793 DAHP synthetase I family JH254_17745 PF01219 Prokaryotic diacylglycerol kinase JH254_17750 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JH254_17750 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JH254_17750 PF01842 ACT domain JH254_17755 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JH254_17760 PF01812 5-formyltetrahydrofolate cyclo-ligase family JH254_17770 PF01113 Dihydrodipicolinate reductase, N-terminus JH254_17770 PF05173 Dihydrodipicolinate reductase, C-terminus JH254_17775 PF00117 Glutamine amidotransferase class-I JH254_17775 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JH254_17780 PF02142 MGS-like domain JH254_17780 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JH254_17780 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JH254_17785 PF00682 HMGL-like JH254_17785 PF08502 LeuA allosteric (dimerisation) domain JH254_17790 PF00990 Diguanylate cyclase, GGDEF domain JH254_17795 PF07759 Protein of unknown function (DUF1615) JH254_17800 PF08378 Nuclease-related domain JH254_17820 PF00270 DEAD/DEAH box helicase JH254_17820 PF00271 Helicase conserved C-terminal domain JH254_17830 PF14521 Lysine-specific metallo-endopeptidase JH254_17845 PF02335 Cytochrome c552 JH254_17850 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) JH254_17850 PF13435 Cytochrome c554 and c-prime JH254_17855 PF00037 4Fe-4S binding domain JH254_17855 PF13247 4Fe-4S dicluster domain JH254_17860 PF03916 Polysulphide reductase, NrfD JH254_17865 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JH254_17865 PF01578 Cytochrome C assembly protein JH254_17870 PF08534 Redoxin JH254_17875 PF03918 Cytochrome C biogenesis protein JH254_17880 PF00768 D-alanyl-D-alanine carboxypeptidase JH254_17890 PF04244 Deoxyribodipyrimidine photo-lyase-related protein JH254_17895 PF01266 FAD dependent oxidoreductase JH254_17900 PF00571 CBS domain JH254_17900 PF01743 Poly A polymerase head domain JH254_17910 PF08267 Cobalamin-independent synthase, N-terminal domain JH254_17910 PF01717 Cobalamin-independent synthase, Catalytic domain JH254_17915 PF03466 LysR substrate binding domain JH254_17915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_17925 PF07715 TonB-dependent Receptor Plug Domain JH254_17925 PF00593 TonB dependent receptor JH254_17935 PF00563 EAL domain JH254_17935 PF00196 Bacterial regulatory proteins, luxR family JH254_17940 PF12833 Helix-turn-helix domain JH254_17940 PF02311 AraC-like ligand binding domain JH254_17945 PF03466 LysR substrate binding domain JH254_17945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_17950 PF13460 NAD(P)H-binding JH254_17960 PF01053 Cys/Met metabolism PLP-dependent enzyme JH254_17965 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JH254_17965 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JH254_17985 PF00141 Peroxidase JH254_17990 PF08220 DeoR-like helix-turn-helix domain JH254_17990 PF00455 DeoR C terminal sensor domain JH254_18015 PF00156 Phosphoribosyl transferase domain JH254_18025 PF10722 Putative bacterial sensory transduction regulator JH254_18035 PF00265 Thymidine kinase JH254_18040 PF03553 Na+/H+ antiporter family JH254_18065 PF03979 Sigma-70 factor, region 1.1 JH254_18065 PF04546 Sigma-70, non-essential region JH254_18065 PF00140 Sigma-70 factor, region 1.2 JH254_18065 PF04542 Sigma-70 region 2 JH254_18065 PF04539 Sigma-70 region 3 JH254_18065 PF04545 Sigma-70, region 4 JH254_18070 PF01807 CHC2 zinc finger JH254_18070 PF08275 DNA primase catalytic core, N-terminal domain JH254_18070 PF08278 DNA primase DnaG DnaB-binding JH254_18070 PF10410 DnaB-helicase binding domain of primase JH254_18075 PF09424 Yqey-like protein JH254_18080 PF01165 Ribosomal protein S21 JH254_18085 PF00814 Glycoprotease family JH254_18090 PF04539 Sigma-70 region 3 JH254_18090 PF00140 Sigma-70 factor, region 1.2 JH254_18090 PF04542 Sigma-70 region 2 JH254_18090 PF04545 Sigma-70, region 4 JH254_18095 PF01551 Peptidase family M23 JH254_18095 PF01476 LysM domain JH254_18100 PF09335 SNARE associated Golgi protein JH254_18110 PF01975 Survival protein SurE JH254_18115 PF01142 tRNA pseudouridine synthase D (TruD) JH254_18120 PF02542 YgbB family JH254_18125 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JH254_18130 PF04977 Septum formation initiator JH254_18135 PF00113 Enolase, C-terminal TIM barrel domain JH254_18135 PF03952 Enolase, N-terminal domain JH254_18140 PF06418 CTP synthase N-terminus JH254_18140 PF00117 Glutamine amidotransferase class-I JH254_18145 PF03819 MazG nucleotide pyrophosphohydrolase domain JH254_18150 PF04607 Region found in RelA / SpoT proteins JH254_18150 PF02824 TGS domain JH254_18150 PF13291 ACT domain JH254_18155 PF05958 tRNA (Uracil-5-)-methyltransferase JH254_18155 PF01938 TRAM domain JH254_18160 PF00672 HAMP domain JH254_18160 PF00512 His Kinase A (phospho-acceptor) domain JH254_18160 PF00072 Response regulator receiver domain JH254_18160 PF01627 Hpt domain JH254_18160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_18160 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JH254_18165 PF07308 Protein of unknown function (DUF1456) JH254_18170 PF01510 N-acetylmuramoyl-L-alanine amidase JH254_18175 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ JH254_18180 PF11967 Recombination protein O N terminal JH254_18180 PF02565 Recombination protein O C terminal JH254_18185 PF01926 50S ribosome-binding GTPase JH254_18185 PF07650 KH domain JH254_18190 PF00035 Double-stranded RNA binding motif JH254_18190 PF14622 Ribonuclease-III-like JH254_18195 PF10502 Signal peptidase, peptidase S26 JH254_18200 PF06421 GTP-binding protein LepA C-terminus JH254_18200 PF00009 Elongation factor Tu GTP binding domain JH254_18200 PF03144 Elongation factor Tu domain 2 JH254_18200 PF00679 Elongation factor G C-terminus JH254_18210 PF03888 MucB/RseB N-terminal domain JH254_18210 PF17188 MucB/RseB C-terminal domain JH254_18215 PF03873 Anti sigma-E protein RseA, C-terminal domain JH254_18215 PF03872 Anti sigma-E protein RseA, N-terminal domain JH254_18220 PF08281 Sigma-70, region 4 JH254_18220 PF04542 Sigma-70 region 2 JH254_18225 PF02910 Fumarate reductase flavoprotein C-term JH254_18225 PF00890 FAD binding domain JH254_18235 PF03937 Flavinator of succinate dehydrogenase JH254_18240 PF01571 Aminomethyltransferase folate-binding domain JH254_18245 PF03466 LysR substrate binding domain JH254_18245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_18260 PF03091 CutA1 divalent ion tolerance protein JH254_18265 PF11412 Disulphide bond corrector protein DsbC JH254_18265 PF02683 Cytochrome C biogenesis protein transmembrane region JH254_18285 PF01336 OB-fold nucleic acid binding domain JH254_18285 PF00152 tRNA synthetases class II (D, K and N) JH254_18345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_18345 PF00512 His Kinase A (phospho-acceptor) domain JH254_18345 PF09456 RcsC Alpha-Beta-Loop (ABL) JH254_18345 PF00072 Response regulator receiver domain JH254_18355 PF01933 Uncharacterised protein family UPF0052 JH254_18365 PF13230 Glutamine amidotransferases class-II JH254_18370 PF13580 SIS domain JH254_18375 PF09317 Domain of unknown function (DUF1974) JH254_18375 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JH254_18375 PF02770 Acyl-CoA dehydrogenase, middle domain JH254_18375 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JH254_18380 PF11849 Domain of unknown function (DUF3369) JH254_18390 PF00929 Exonuclease JH254_18395 PF00075 RNase H JH254_18400 PF08241 Methyltransferase domain JH254_18405 PF16123 Hydroxyacylglutathione hydrolase C-terminus JH254_18405 PF00753 Metallo-beta-lactamase superfamily JH254_18410 PF01476 LysM domain JH254_18410 PF01464 Transglycosylase SLT domain JH254_18415 PF03372 Endonuclease/Exonuclease/phosphatase family JH254_18425 PF03061 Thioesterase superfamily JH254_18435 PF00356 Bacterial regulatory proteins, lacI family JH254_18440 PF14718 Soluble lytic murein transglycosylase L domain JH254_18440 PF01464 Transglycosylase SLT domain JH254_18445 PF00990 Diguanylate cyclase, GGDEF domain JH254_18445 PF00563 EAL domain JH254_18445 PF03707 Bacterial signalling protein N terminal repeat JH254_18450 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JH254_18470 PF04357 TamB, inner membrane protein subunit of TAM complex JH254_18475 PF01103 Surface antigen JH254_18475 PF07244 Surface antigen variable number repeat JH254_18475 PF17243 POTRA domain TamA domain 1 JH254_18490 PF13408 Recombinase zinc beta ribbon domain JH254_18490 PF00239 Resolvase, N terminal domain JH254_18490 PF07508 Recombinase JH254_18500 PF02706 Chain length determinant protein JH254_18505 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase JH254_18510 PF00483 Nucleotidyl transferase JH254_18515 PF04321 RmlD substrate binding domain JH254_18520 PF02397 Bacterial sugar transferase JH254_18525 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JH254_18525 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JH254_18525 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JH254_18530 PF00535 Glycosyl transferase family 2 JH254_18535 PF00534 Glycosyl transferases group 1 JH254_18535 PF13439 Glycosyltransferase Family 4 JH254_18555 PF01943 Polysaccharide biosynthesis protein JH254_18560 PF16363 GDP-mannose 4,6 dehydratase JH254_18565 PF00072 Response regulator receiver domain JH254_18565 PF00486 Transcriptional regulatory protein, C terminal JH254_18570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_18575 PF02685 Glucokinase JH254_18580 PF01418 Helix-turn-helix domain, rpiR family JH254_18580 PF01380 SIS domain JH254_18585 PF00224 Pyruvate kinase, barrel domain JH254_18585 PF02887 Pyruvate kinase, alpha/beta domain JH254_18595 PF00873 AcrB/AcrD/AcrF family JH254_18600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JH254_18600 PF02770 Acyl-CoA dehydrogenase, middle domain JH254_18600 PF09317 Domain of unknown function (DUF1974) JH254_18600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JH254_18605 PF00440 Bacterial regulatory proteins, tetR family JH254_18625 PF12705 PD-(D/E)XK nuclease superfamily JH254_18625 PF00580 UvrD/REP helicase N-terminal domain JH254_18625 PF13361 UvrD-like helicase C-terminal domain JH254_18635 PF00463 Isocitrate lyase family JH254_18640 PF01274 Malate synthase JH254_18655 PF14437 MafB19-like deaminase JH254_18660 PF00528 Binding-protein-dependent transport system inner membrane component JH254_18665 PF00528 Binding-protein-dependent transport system inner membrane component JH254_18670 PF00005 ABC transporter JH254_18675 PF01895 PhoU domain JH254_18680 PF03471 Transporter associated domain JH254_18680 PF00571 CBS domain JH254_18680 PF01595 Cyclin M transmembrane N-terminal domain JH254_18690 PF02607 B12 binding domain JH254_18690 PF02310 B12 binding domain JH254_18690 PF02574 Homocysteine S-methyltransferase JH254_18690 PF00809 Pterin binding enzyme JH254_18690 PF02965 Vitamin B12 dependent methionine synthase, activation domain JH254_18695 PF13520 Amino acid permease JH254_18700 PF04116 Fatty acid hydroxylase superfamily JH254_18705 PF00005 ABC transporter JH254_18710 PF00528 Binding-protein-dependent transport system inner membrane component JH254_18715 PF00497 Bacterial extracellular solute-binding proteins, family 3 JH254_18725 PF14760 Rnk N-terminus JH254_18725 PF01272 Transcription elongation factor, GreA/GreB, C-term JH254_18740 PF00245 Alkaline phosphatase JH254_18745 PF00245 Alkaline phosphatase JH254_18750 PF01926 50S ribosome-binding GTPase JH254_18760 PF00850 Histone deacetylase domain JH254_18775 PF00975 Thioesterase domain JH254_18775 PF00550 Phosphopantetheine attachment site JH254_18775 PF00668 Condensation domain JH254_18775 PF13193 AMP-binding enzyme C-terminal domain JH254_18775 PF00501 AMP-binding enzyme JH254_18780 PF00857 Isochorismatase family JH254_18780 PF00550 Phosphopantetheine attachment site JH254_18785 PF00501 AMP-binding enzyme JH254_18785 PF13193 AMP-binding enzyme C-terminal domain JH254_18790 PF00425 chorismate binding enzyme JH254_18795 PF07273 Protein of unknown function (DUF1439) JH254_18805 PF00483 Nucleotidyl transferase JH254_18810 PF03707 Bacterial signalling protein N terminal repeat JH254_18810 PF00990 Diguanylate cyclase, GGDEF domain JH254_18810 PF00563 EAL domain JH254_18825 PF17200 Single Cache domain 2 JH254_18825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JH254_18825 PF00672 HAMP domain JH254_18830 PF00294 pfkB family carbohydrate kinase JH254_18835 PF01124 MAPEG family JH254_18840 PF00762 Ferrochelatase JH254_18845 PF05191 Adenylate kinase, active site lid JH254_18850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_18850 PF00183 Hsp90 protein JH254_18855 PF02132 RecR protein JH254_18855 PF13662 Toprim domain JH254_18870 PF01406 tRNA synthetases class I (C) catalytic domain JH254_18870 PF09190 DALR domain JH254_18875 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JH254_18885 PF00149 Calcineurin-like phosphoesterase JH254_18890 PF04226 Transglycosylase associated protein JH254_18895 PF16925 Tetracyclin repressor-like, C-terminal domain JH254_18895 PF00440 Bacterial regulatory proteins, tetR family JH254_18900 PF08240 Alcohol dehydrogenase GroES-like domain JH254_18900 PF00107 Zinc-binding dehydrogenase JH254_18905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JH254_18905 PF08447 PAS fold JH254_18905 PF13426 PAS domain JH254_18925 PF01066 CDP-alcohol phosphatidyltransferase JH254_18930 PF02151 UvrB/uvrC motif JH254_18930 PF08459 UvrC Helix-hairpin-helix N-terminal JH254_18930 PF01541 GIY-YIG catalytic domain JH254_18935 PF00196 Bacterial regulatory proteins, luxR family JH254_18935 PF00072 Response regulator receiver domain JH254_18940 PF02348 Cytidylyltransferase JH254_18945 PF03966 Trm112p-like protein JH254_18950 PF02606 Tetraacyldisaccharide-1-P 4'-kinase JH254_18955 PF00664 ABC transporter transmembrane region JH254_18955 PF00005 ABC transporter JH254_18960 PF00753 Metallo-beta-lactamase superfamily JH254_18960 PF03772 Competence protein JH254_18975 PF05872 Bacterial protein of unknown function (DUF853) JH254_18980 PF00155 Aminotransferase class I and II JH254_18990 PF13609 Gram-negative porin JH254_18995 PF13307 Helicase C-terminal domain JH254_18995 PF06733 DEAD_2 JH254_19020 PF13603 Leucyl-tRNA synthetase, Domain 2 JH254_19020 PF08264 Anticodon-binding domain of tRNA JH254_19020 PF00133 tRNA synthetases class I (I, L, M and V) JH254_19025 PF07295 Zinc-ribbon containing domain JH254_19030 PF00795 Carbon-nitrogen hydrolase JH254_19035 PF03471 Transporter associated domain JH254_19035 PF00571 CBS domain JH254_19040 PF02130 Uncharacterized protein family UPF0054 JH254_19045 PF02562 PhoH-like protein JH254_19050 PF00919 Uncharacterized protein family UPF0004 JH254_19050 PF04055 Radical SAM superfamily JH254_19050 PF01938 TRAM domain JH254_19055 PF01494 FAD binding domain JH254_19060 PF00857 Isochorismatase family JH254_19065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_19065 PF03466 LysR substrate binding domain JH254_19075 PF13419 Haloacid dehalogenase-like hydrolase JH254_19080 PF17151 Periplasmic sensor domain JH254_19080 PF00990 Diguanylate cyclase, GGDEF domain JH254_19090 PF17158 Membrane-associated sensor, integral membrane domain JH254_19090 PF00990 Diguanylate cyclase, GGDEF domain JH254_19100 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JH254_19100 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JH254_19110 PF14226 non-haem dioxygenase in morphine synthesis N-terminal JH254_19110 PF03171 2OG-Fe(II) oxygenase superfamily JH254_19115 PF03180 NLPA lipoprotein JH254_19120 PF09383 NIL domain JH254_19120 PF00005 ABC transporter JH254_19125 PF00528 Binding-protein-dependent transport system inner membrane component JH254_19130 PF09285 Elongation factor P, C-terminal JH254_19130 PF08207 Elongation factor P (EF-P) KOW-like domain JH254_19130 PF01132 Elongation factor P (EF-P) OB domain JH254_19140 PF00478 IMP dehydrogenase / GMP reductase domain JH254_19145 PF08443 RimK-like ATP-grasp domain JH254_19145 PF18030 RimK PreATP-grasp domain JH254_19155 PF01555 DNA methylase JH254_19170 PF00176 SNF2 family N-terminal domain JH254_19170 PF00271 Helicase conserved C-terminal domain JH254_19180 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A JH254_19225 PF04002 RadC-like JAB domain JH254_19265 PF02796 Helix-turn-helix domain of resolvase JH254_19265 PF00239 Resolvase, N terminal domain JH254_19295 PF06826 Predicted Permease Membrane Region JH254_19295 PF02080 TrkA-C domain JH254_19300 PF03006 Haemolysin-III related JH254_19305 PF00282 Pyridoxal-dependent decarboxylase conserved domain JH254_19310 PF04279 Intracellular septation protein A JH254_19315 PF03795 YCII-related domain JH254_19320 PF00459 Inositol monophosphatase family JH254_19330 PF00483 Nucleotidyl transferase JH254_19335 PF00854 POT family JH254_19340 PF00072 Response regulator receiver domain JH254_19370 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JH254_19375 PF02321 Outer membrane efflux protein JH254_19380 PF01207 Dihydrouridine synthase (Dus) JH254_19385 PF02954 Bacterial regulatory protein, Fis family JH254_19390 PF01810 LysE type translocator JH254_19400 PF02092 Glycyl-tRNA synthetase beta subunit JH254_19400 PF05746 DALR anticodon binding domain JH254_19405 PF02091 Glycyl-tRNA synthetase alpha subunit JH254_19410 PF03352 Methyladenine glycosylase JH254_19415 PF00857 Isochorismatase family JH254_19425 PF13488 Glycine zipper JH254_19425 PF00691 OmpA family JH254_19445 PF01042 Endoribonuclease L-PSP JH254_19450 PF01206 Sulfurtransferase TusA JH254_19460 PF01547 Bacterial extracellular solute-binding protein JH254_19465 PF00512 His Kinase A (phospho-acceptor) domain JH254_19465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_19465 PF00672 HAMP domain JH254_19470 PF00486 Transcriptional regulatory protein, C terminal JH254_19470 PF00072 Response regulator receiver domain JH254_19475 PF00108 Thiolase, N-terminal domain JH254_19475 PF02803 Thiolase, C-terminal domain JH254_19480 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JH254_19480 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JH254_19480 PF00378 Enoyl-CoA hydratase/isomerase JH254_19485 PF00501 AMP-binding enzyme JH254_19485 PF13193 AMP-binding enzyme C-terminal domain JH254_19490 PF00557 Metallopeptidase family M24 JH254_19495 PF09186 Domain of unknown function (DUF1949) JH254_19495 PF01205 Uncharacterized protein family UPF0029 JH254_19500 PF02386 Cation transport protein JH254_19505 PF12724 Flavodoxin domain JH254_19525 PF01476 LysM domain JH254_19525 PF03734 L,D-transpeptidase catalytic domain JH254_19525 PF17969 L,D-transpeptidase C-terminal domain JH254_19535 PF01575 MaoC like domain JH254_19540 PF05971 RNA methyltransferase JH254_19545 PF00877 NlpC/P60 family JH254_19550 PF01648 4'-phosphopantetheinyl transferase superfamily JH254_19555 PF00085 Thioredoxin JH254_19565 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JH254_19570 PF01842 ACT domain JH254_19570 PF00551 Formyl transferase JH254_19580 PF13091 PLD-like domain JH254_19580 PF13396 Phospholipase_D-nuclease N-terminal JH254_19595 PF01551 Peptidase family M23 JH254_19595 PF10145 Phage-related minor tail protein JH254_19595 PF01464 Transglycosylase SLT domain JH254_19605 PF00230 Major intrinsic protein JH254_19610 PF02075 Crossover junction endodeoxyribonuclease RuvC JH254_19615 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JH254_19635 PF02789 Cytosol aminopeptidase family, N-terminal domain JH254_19635 PF00883 Cytosol aminopeptidase family, catalytic domain JH254_19640 PF13419 Haloacid dehalogenase-like hydrolase JH254_19645 PF01546 Peptidase family M20/M25/M40 JH254_19645 PF07687 Peptidase dimerisation domain JH254_19650 PF00365 Phosphofructokinase JH254_19655 PF00121 Triosephosphate isomerase JH254_19660 PF02698 DUF218 domain JH254_19665 PF13847 Methyltransferase domain JH254_19670 PF03882 MukF winged-helix domain JH254_19670 PF17192 MukF middle domain JH254_19670 PF17193 MukF C-terminal domain JH254_19675 PF04288 MukE-like family JH254_19680 PF16330 MukB hinge domain JH254_19680 PF04310 MukB N-terminal JH254_19685 PF03330 Lytic transglycolase JH254_19685 PF05036 Sporulation related domain JH254_19705 PF00300 Histidine phosphatase superfamily (branch 1) JH254_19720 PF12161 HsdM N-terminal domain JH254_19720 PF02384 N-6 DNA Methylase JH254_19725 PF01695 IstB-like ATP binding protein JH254_19730 PF00665 Integrase core domain JH254_19735 PF00293 NUDIX domain JH254_19755 PF00873 AcrB/AcrD/AcrF family JH254_19760 PF00239 Resolvase, N terminal domain JH254_19760 PF02796 Helix-turn-helix domain of resolvase JH254_19795 PF00239 Resolvase, N terminal domain JH254_19795 PF02796 Helix-turn-helix domain of resolvase JH254_19800 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ JH254_19805 PF03167 Uracil DNA glycosylase superfamily JH254_19820 PF00923 Transaldolase/Fructose-6-phosphate aldolase JH254_19825 PF01235 Sodium:alanine symporter family JH254_19830 PF00144 Beta-lactamase JH254_19835 PF07690 Major Facilitator Superfamily JH254_19840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JH254_19840 PF03466 LysR substrate binding domain JH254_19845 PF03652 Holliday junction resolvase JH254_19850 PF02622 Uncharacterized ACR, COG1678 JH254_19855 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain JH254_19855 PF02951 Prokaryotic glutathione synthetase, N-terminal domain JH254_19860 PF04452 RNA methyltransferase JH254_19865 PF04231 Endonuclease I JH254_19870 PF10263 SprT-like family JH254_19870 PF17283 SprT-like zinc ribbon domain JH254_19875 PF02773 S-adenosylmethionine synthetase, C-terminal domain JH254_19875 PF00438 S-adenosylmethionine synthetase, N-terminal domain JH254_19875 PF02772 S-adenosylmethionine synthetase, central domain JH254_19880 PF02780 Transketolase, C-terminal domain JH254_19880 PF02779 Transketolase, pyrimidine binding domain JH254_19880 PF00456 Transketolase, thiamine diphosphate binding domain JH254_19895 PF00497 Bacterial extracellular solute-binding proteins, family 3 JH254_19900 PF00528 Binding-protein-dependent transport system inner membrane component JH254_19905 PF00005 ABC transporter JH254_19910 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JH254_19910 PF07992 Pyridine nucleotide-disulphide oxidoreductase JH254_19915 PF04898 Glutamate synthase central domain JH254_19915 PF01493 GXGXG motif JH254_19915 PF01645 Conserved region in glutamate synthase JH254_19915 PF00310 Glutamine amidotransferases class-II JH254_19920 PF16199 Radical_SAM C-terminal domain JH254_19920 PF04055 Radical SAM superfamily JH254_19925 PF00664 ABC transporter transmembrane region JH254_19925 PF00005 ABC transporter JH254_19925 PF03412 Peptidase C39 family JH254_19955 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase JH254_19970 PF02687 FtsX-like permease family JH254_19970 PF00005 ABC transporter JH254_19970 PF12704 MacB-like periplasmic core domain JH254_19975 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JH254_19980 PF00486 Transcriptional regulatory protein, C terminal JH254_19980 PF00072 Response regulator receiver domain JH254_19985 PF00672 HAMP domain JH254_19985 PF00512 His Kinase A (phospho-acceptor) domain JH254_19985 PF16527 Two-component sensor protein CpxA, periplasmic domain JH254_19985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_20005 PF00445 Ribonuclease T2 family JH254_20010 PF03060 Nitronate monooxygenase JH254_20050 PF06071 Protein of unknown function (DUF933) JH254_20050 PF01926 50S ribosome-binding GTPase JH254_20055 PF01195 Peptidyl-tRNA hydrolase JH254_20060 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JH254_20060 PF14572 Phosphoribosyl synthetase-associated domain JH254_20070 PF00288 GHMP kinases N terminal domain JH254_20070 PF08544 GHMP kinases C terminal JH254_20075 PF03550 Outer membrane lipoprotein LolB JH254_20080 PF01488 Shikimate / quinate 5-dehydrogenase JH254_20080 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain JH254_20080 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain JH254_20085 PF03462 PCRF domain JH254_20085 PF00472 RF-1 domain JH254_20090 PF17827 PrmC N-terminal domain JH254_20090 PF13847 Methyltransferase domain JH254_20100 PF13369 Transglutaminase-like superfamily JH254_20105 PF00793 DAHP synthetase I family JH254_20110 PF00375 Sodium:dicarboxylate symporter family JH254_20115 PF01228 Glycine radical JH254_20120 PF13808 DDE_Tnp_1-associated JH254_20120 PF01609 Transposase DDE domain JH254_20135 PF12833 Helix-turn-helix domain JH254_20135 PF02311 AraC-like ligand binding domain JH254_20140 PF00111 2Fe-2S iron-sulfur cluster binding domain JH254_20140 PF00175 Oxidoreductase NAD-binding domain JH254_20140 PF00970 Oxidoreductase FAD-binding domain JH254_20145 PF00271 Helicase conserved C-terminal domain JH254_20145 PF00270 DEAD/DEAH box helicase JH254_20150 PF00990 Diguanylate cyclase, GGDEF domain JH254_20155 PF05643 Putative bacterial lipoprotein (DUF799) JH254_20165 PF03783 Curli production assembly/transport component CsgG JH254_20190 PF06082 Exopolysaccharide biosynthesis protein YbjH JH254_20195 PF06251 Capsule biosynthesis GfcC JH254_20210 PF13807 G-rich domain on putative tyrosine kinase JH254_20210 PF13614 AAA domain JH254_20210 PF02706 Chain length determinant protein JH254_20215 PF01451 Low molecular weight phosphotyrosine protein phosphatase JH254_20220 PF18412 Outer-membrane lipoprotein Wza C-terminal domain JH254_20220 PF10531 SLBB domain JH254_20220 PF02563 Polysaccharide biosynthesis/export protein JH254_20225 PF01751 Toprim domain JH254_20225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JH254_20225 PF18053 DNA gyrase B subunit insert domain JH254_20225 PF00986 DNA gyrase B subunit, carboxyl terminus JH254_20225 PF00204 DNA gyrase B JH254_20230 PF02463 RecF/RecN/SMC N terminal domain JH254_20235 PF00712 DNA polymerase III beta subunit, N-terminal domain JH254_20235 PF02767 DNA polymerase III beta subunit, central domain JH254_20235 PF02768 DNA polymerase III beta subunit, C-terminal domain JH254_20240 PF00308 Bacterial dnaA protein JH254_20240 PF08299 Bacterial dnaA protein helix-turn-helix JH254_20240 PF11638 DnaA N-terminal domain JH254_20245 PF00497 Bacterial extracellular solute-binding proteins, family 3 JH254_20250 PF00528 Binding-protein-dependent transport system inner membrane component JH254_20285 PF04002 RadC-like JAB domain JH254_20330 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A JH254_20335 PF12008 Type I restriction and modification enzyme - subunit R C terminal JH254_20335 PF18766 SWI2/SNF2 ATPase JH254_20335 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JH254_20355 PF08007 Cupin superfamily protein JH254_20360 PF05711 Macrocin-O-methyltransferase (TylF) JH254_20405 PF01609 Transposase DDE domain JH254_20410 PF09722 Protein of unknown function (DUF2384) JH254_20470 PF03458 UPF0126 domain JH254_20475 PF00700 Bacterial flagellin C-terminal helical region JH254_20475 PF07196 Flagellin hook IN motif JH254_20475 PF00669 Bacterial flagellin N-terminal helical region JH254_20480 PF03646 FlaG protein JH254_20485 PF07196 Flagellin hook IN motif JH254_20485 PF07195 Flagellar hook-associated protein 2 C-terminus JH254_20485 PF02465 Flagellar hook-associated protein 2 N-terminus JH254_20490 PF02561 Flagellar protein FliS JH254_20520 PF01381 Helix-turn-helix JH254_20525 PF01609 Transposase DDE domain JH254_20530 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JH254_20530 PF12008 Type I restriction and modification enzyme - subunit R C terminal JH254_20530 PF18766 SWI2/SNF2 ATPase JH254_20535 PF01420 Type I restriction modification DNA specificity domain JH254_20550 PF05638 Type VI secretion system effector, Hcp JH254_20575 PF01555 DNA methylase JH254_20580 PF00753 Metallo-beta-lactamase superfamily JH254_20590 PF01926 50S ribosome-binding GTPase JH254_20595 PF00034 Cytochrome c JH254_20625 PF01051 Initiator Replication protein JH254_20675 PF00186 Dihydrofolate reductase JH254_20680 PF00303 Thymidylate synthase JH254_20690 PF03477 ATP cone domain JH254_20690 PF00317 Ribonucleotide reductase, all-alpha domain JH254_20690 PF02867 Ribonucleotide reductase, barrel domain JH254_20720 PF13476 AAA domain JH254_20755 PF00589 Phage integrase family JH254_20755 PF13495 Phage integrase, N-terminal SAM-like domain JH254_20770 PF00186 Dihydrofolate reductase JH254_20775 PF00893 Small Multidrug Resistance protein JH254_20780 PF00809 Pterin binding enzyme JH254_20790 PF13610 DDE domain JH254_20830 PF00216 Bacterial DNA-binding protein JH254_20850 PF00154 recA bacterial DNA recombination protein JH254_20860 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JH254_20860 PF00476 DNA polymerase family A JH254_20860 PF01367 5'-3' exonuclease, C-terminal SAM fold JH254_20880 PF02811 PHP domain JH254_20880 PF14579 Helix-hairpin-helix motif JH254_20880 PF07733 Bacterial DNA polymerase III alpha NTPase domain JH254_20880 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JH254_20895 PF06213 Cobalamin biosynthesis protein CobT JH254_20895 PF11775 Cobalamin biosynthesis protein CobT VWA domain JH254_20910 PF13614 AAA domain JH254_20940 PF01807 CHC2 zinc finger JH254_20940 PF08275 DNA primase catalytic core, N-terminal domain JH254_20940 PF10410 DnaB-helicase binding domain of primase JH254_20960 PF17209 Hfq protein JH254_20990 PF07484 Phage Tail Collar Domain JH254_20990 PF08400 Prophage tail fibre N-terminal JH254_20990 PF03335 Phage tail fibre repeat JH254_21120 PF00005 ABC transporter JH254_21140 PF00271 Helicase conserved C-terminal domain JH254_21140 PF17191 RecG wedge domain JH254_21140 PF00270 DEAD/DEAH box helicase JH254_21175 PF00589 Phage integrase family JH254_21175 PF02899 Phage integrase, N-terminal SAM-like domain