locus-tag class description NRL03_00005 PF00308 Bacterial dnaA protein NRL03_00005 PF08299 Bacterial dnaA protein helix-turn-helix NRL03_00005 PF11638 DnaA N-terminal domain NRL03_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain NRL03_00010 PF02767 DNA polymerase III beta subunit, central domain NRL03_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain NRL03_00015 PF02463 RecF/RecN/SMC N terminal domain NRL03_00020 PF01751 Toprim domain NRL03_00020 PF18053 DNA gyrase B subunit insert domain NRL03_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_00020 PF00204 DNA gyrase B NRL03_00020 PF00986 DNA gyrase B subunit, carboxyl terminus NRL03_00025 PF02311 AraC-like ligand binding domain NRL03_00025 PF12833 Helix-turn-helix domain NRL03_00030 PF12706 Beta-lactamase superfamily domain NRL03_00035 PF00011 Hsp20/alpha crystallin family NRL03_00040 PF00011 Hsp20/alpha crystallin family NRL03_00045 PF00155 Aminotransferase class I and II NRL03_00050 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_00050 PF01610 Transposase NRL03_00050 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_00065 PF07690 Major Facilitator Superfamily NRL03_00070 PF00072 Response regulator receiver domain NRL03_00070 PF00486 Transcriptional regulatory protein, C terminal NRL03_00075 PF13493 Domain of unknown function (DUF4118) NRL03_00075 PF13492 GAF domain NRL03_00075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_00075 PF00512 His Kinase A (phospho-acceptor) domain NRL03_00075 PF02702 Osmosensitive K+ channel His kinase sensor domain NRL03_00080 PF02669 K+-transporting ATPase, c chain NRL03_00090 PF03814 Potassium-transporting ATPase A subunit NRL03_00095 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NRL03_00095 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL03_00100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_00100 PF00512 His Kinase A (phospho-acceptor) domain NRL03_00100 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL03_00105 PF00873 AcrB/AcrD/AcrF family NRL03_00110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRL03_00115 PF00440 Bacterial regulatory proteins, tetR family NRL03_00150 PF12146 Serine aminopeptidase, S33 NRL03_00155 PF00588 SpoU rRNA Methylase family NRL03_00155 PF12105 SpoU, rRNA methylase, C-terminal NRL03_00160 PF02824 TGS domain NRL03_00160 PF04607 Region found in RelA / SpoT proteins NRL03_00160 PF13291 ACT domain NRL03_00165 PF01192 RNA polymerase Rpb6 NRL03_00170 PF00625 Guanylate kinase NRL03_00175 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NRL03_00190 PF00892 EamA-like transporter family NRL03_00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_00210 PF03466 LysR substrate binding domain NRL03_00215 PF00579 tRNA synthetases class I (W and Y) NRL03_00220 PF00582 Universal stress protein family NRL03_00225 PF07055 Enoyl reductase FAD binding domain NRL03_00225 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NRL03_00225 PF12241 Trans-2-enoyl-CoA reductase catalytic region NRL03_00230 PF00990 Diguanylate cyclase, GGDEF domain NRL03_00230 PF05230 MASE2 domain NRL03_00235 PF00210 Ferritin-like domain NRL03_00245 PF07690 Major Facilitator Superfamily NRL03_00250 PF01810 LysE type translocator NRL03_00270 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL03_00270 PF00072 Response regulator receiver domain NRL03_00270 PF00989 PAS fold NRL03_00270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_00270 PF00512 His Kinase A (phospho-acceptor) domain NRL03_00270 PF01627 Hpt domain NRL03_00280 PF06580 Histidine kinase NRL03_00280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_00280 PF07694 5TMR of 5TMR-LYT NRL03_00285 PF04397 LytTr DNA-binding domain NRL03_00285 PF00072 Response regulator receiver domain NRL03_00290 PF07690 Major Facilitator Superfamily NRL03_00295 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NRL03_00295 PF02222 ATP-grasp domain NRL03_00300 PF00731 AIR carboxylase NRL03_00315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_00315 PF03466 LysR substrate binding domain NRL03_00320 PF07715 TonB-dependent Receptor Plug Domain NRL03_00320 PF00593 TonB dependent receptor NRL03_00325 PF01177 Asp/Glu/Hydantoin racemase NRL03_00360 PF13380 CoA binding domain NRL03_00360 PF00583 Acetyltransferase (GNAT) family NRL03_00360 PF13607 Succinyl-CoA ligase like flavodoxin domain NRL03_00370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_00370 PF03466 LysR substrate binding domain NRL03_00375 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NRL03_00375 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NRL03_00380 PF00342 Phosphoglucose isomerase NRL03_00390 PF00924 Mechanosensitive ion channel NRL03_00390 PF05552 Conserved TM helix NRL03_00405 PF00440 Bacterial regulatory proteins, tetR family NRL03_00410 PF00692 dUTPase NRL03_00415 PF04127 DNA / pantothenate metabolism flavoprotein NRL03_00415 PF02441 Flavoprotein NRL03_00420 PF04002 RadC-like JAB domain NRL03_00425 PF00830 Ribosomal L28 family NRL03_00430 PF00471 Ribosomal protein L33 NRL03_00440 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NRL03_00440 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NRL03_00440 PF06827 Zinc finger found in FPG and IleRS NRL03_00445 PF04393 Protein of unknown function (DUF535) NRL03_00450 PF01467 Cytidylyltransferase-like NRL03_00455 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NRL03_00460 PF00535 Glycosyl transferase family 2 NRL03_00465 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NRL03_00470 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) NRL03_00480 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_00480 PF01610 Transposase NRL03_00480 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_00485 PF03755 YicC-like family, N-terminal region NRL03_00485 PF08340 Domain of unknown function (DUF1732) NRL03_00490 PF03725 3' exoribonuclease family, domain 2 NRL03_00490 PF01138 3' exoribonuclease family, domain 1 NRL03_00495 PF00156 Phosphoribosyl transferase domain NRL03_00500 PF00403 Heavy-metal-associated domain NRL03_00505 PF00376 MerR family regulatory protein NRL03_00505 PF09278 MerR, DNA binding NRL03_00510 PF00563 EAL domain NRL03_00510 PF01590 GAF domain NRL03_00510 PF00990 Diguanylate cyclase, GGDEF domain NRL03_00510 PF00360 Phytochrome region NRL03_00515 PF06288 Protein of unknown function (DUF1040) NRL03_00520 PF13746 4Fe-4S dicluster domain NRL03_00520 PF12801 4Fe-4S binding domain NRL03_00520 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase NRL03_00525 PF01636 Phosphotransferase enzyme family NRL03_00530 PF01323 DSBA-like thioredoxin domain NRL03_00535 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_00540 PF00005 ABC transporter NRL03_00550 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NRL03_00550 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NRL03_00555 PF00857 Isochorismatase family NRL03_00565 PF04463 Protein of unknown function (DUF523) NRL03_00570 PF01553 Acyltransferase NRL03_00575 PF01553 Acyltransferase NRL03_00580 PF01078 Magnesium chelatase, subunit ChlI NRL03_00580 PF13335 Magnesium chelatase, subunit ChlI C-terminal NRL03_00585 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRL03_00585 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NRL03_00585 PF00205 Thiamine pyrophosphate enzyme, central domain NRL03_00595 PF01063 Amino-transferase class IV NRL03_00600 PF00920 Dehydratase family NRL03_00605 PF00291 Pyridoxal-phosphate dependent enzyme NRL03_00605 PF00585 C-terminal regulatory domain of Threonine dehydratase NRL03_00610 PF00691 OmpA family NRL03_00610 PF01389 OmpA-like transmembrane domain NRL03_00620 PF00440 Bacterial regulatory proteins, tetR family NRL03_00625 PF17764 3′ DNA-binding domain (3′BD) NRL03_00625 PF00270 DEAD/DEAH box helicase NRL03_00625 PF00271 Helicase conserved C-terminal domain NRL03_00625 PF18074 Primosomal protein N C-terminal domain NRL03_00625 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NRL03_00630 PF01197 Ribosomal protein L31 NRL03_00635 PF11066 Protein of unknown function (DUF2867) NRL03_00635 PF13460 NAD(P)H-binding NRL03_00640 PF00390 Malic enzyme, N-terminal domain NRL03_00640 PF03949 Malic enzyme, NAD binding domain NRL03_00650 PF00512 His Kinase A (phospho-acceptor) domain NRL03_00650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_00650 PF00672 HAMP domain NRL03_00655 PF00486 Transcriptional regulatory protein, C terminal NRL03_00655 PF00072 Response regulator receiver domain NRL03_00660 PF05958 tRNA (Uracil-5-)-methyltransferase NRL03_00675 PF02903 Alpha amylase, N-terminal ig-like domain NRL03_00675 PF00128 Alpha amylase, catalytic domain NRL03_00690 PF00012 Hsp70 protein NRL03_00695 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRL03_00695 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NRL03_00700 PF05981 CreA protein NRL03_00715 PF01258 Prokaryotic dksA/traR C4-type zinc finger NRL03_00720 PF00120 Glutamine synthetase, catalytic domain NRL03_00725 PF00202 Aminotransferase class-III NRL03_00730 PF13416 Bacterial extracellular solute-binding protein NRL03_00735 PF13416 Bacterial extracellular solute-binding protein NRL03_00740 PF00005 ABC transporter NRL03_00740 PF08402 TOBE domain NRL03_00745 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_00750 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_00755 PF03473 MOSC domain NRL03_00755 PF03475 3-alpha domain NRL03_00770 PF03061 Thioesterase superfamily NRL03_00775 PF16124 RecQ zinc-binding NRL03_00775 PF09382 RQC domain NRL03_00775 PF00271 Helicase conserved C-terminal domain NRL03_00775 PF00270 DEAD/DEAH box helicase NRL03_00775 PF00570 HRDC domain NRL03_00780 PF00034 Cytochrome c NRL03_00785 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NRL03_00795 PF02592 Putative vitamin uptake transporter NRL03_00800 PF01609 Transposase DDE domain NRL03_00800 PF13006 Insertion element 4 transposase N-terminal NRL03_00805 PF03737 Aldolase/RraA NRL03_00810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL03_00810 PF00672 HAMP domain NRL03_00815 PF03448 MgtE intracellular N domain NRL03_00815 PF01769 Divalent cation transporter NRL03_00815 PF00571 CBS domain NRL03_00820 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NRL03_00820 PF10414 Sirohaem synthase dimerisation region NRL03_00820 PF14824 Sirohaem biosynthesis protein central NRL03_00825 PF01226 Formate/nitrite transporter NRL03_00830 PF13806 Rieske-like [2Fe-2S] domain NRL03_00835 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NRL03_00835 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NRL03_00835 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL03_00835 PF18267 Rubredoxin NAD+ reductase C-terminal domain NRL03_00835 PF04324 BFD-like [2Fe-2S] binding domain NRL03_00850 PF00005 ABC transporter NRL03_00855 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRL03_00875 PF00004 ATPase family associated with various cellular activities (AAA) NRL03_00875 PF07724 AAA domain (Cdc48 subfamily) NRL03_00875 PF10431 C-terminal, D2-small domain, of ClpB protein NRL03_00880 PF00227 Proteasome subunit NRL03_00890 PF03485 Arginyl tRNA synthetase N terminal domain NRL03_00890 PF05746 DALR anticodon binding domain NRL03_00890 PF00750 tRNA synthetases class I (R) NRL03_00900 PF04545 Sigma-70, region 4 NRL03_00900 PF04542 Sigma-70 region 2 NRL03_00905 PF12973 ChrR Cupin-like domain NRL03_00910 PF02673 Bacitracin resistance protein BacA NRL03_00915 PF00248 Aldo/keto reductase family NRL03_00920 PF01263 Aldose 1-epimerase NRL03_00925 PF10509 Galactokinase galactose-binding signature NRL03_00925 PF00288 GHMP kinases N terminal domain NRL03_00925 PF08544 GHMP kinases C terminal NRL03_00930 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain NRL03_00930 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain NRL03_00935 PF16363 GDP-mannose 4,6 dehydratase NRL03_00940 PF00356 Bacterial regulatory proteins, lacI family NRL03_00945 PF00703 Glycosyl hydrolases family 2 NRL03_00945 PF02929 Beta galactosidase small chain NRL03_00945 PF16353 Domain of unknown function(DUF4981) NRL03_00945 PF02836 Glycosyl hydrolases family 2, TIM barrel domain NRL03_00945 PF02837 Glycosyl hydrolases family 2, sugar binding domain NRL03_00950 PF13407 Periplasmic binding protein domain NRL03_00955 PF00005 ABC transporter NRL03_00960 PF02653 Branched-chain amino acid transport system / permease component NRL03_00965 PF02743 Cache domain NRL03_00965 PF00672 HAMP domain NRL03_00965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL03_00980 PF00696 Amino acid kinase family NRL03_00985 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NRL03_00985 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NRL03_00990 PF03606 C4-dicarboxylate anaerobic carrier NRL03_00995 PF01316 Arginine repressor, DNA binding domain NRL03_00995 PF02863 Arginine repressor, C-terminal domain NRL03_01000 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain NRL03_01000 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain NRL03_01005 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NRL03_01005 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NRL03_01030 PF00672 HAMP domain NRL03_01030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL03_01030 PF02743 Cache domain NRL03_01040 PF08212 Lipocalin-like domain NRL03_01045 PF06719 AraC-type transcriptional regulator N-terminus NRL03_01045 PF12833 Helix-turn-helix domain NRL03_01050 PF00465 Iron-containing alcohol dehydrogenase NRL03_01055 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch NRL03_01055 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NRL03_01055 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NRL03_01060 PF02233 NAD(P) transhydrogenase beta subunit NRL03_01065 PF13006 Insertion element 4 transposase N-terminal NRL03_01065 PF01609 Transposase DDE domain NRL03_01075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_01080 PF00072 Response regulator receiver domain NRL03_01080 PF00486 Transcriptional regulatory protein, C terminal NRL03_01095 PF01794 Ferric reductase like transmembrane component NRL03_01100 PF00174 Oxidoreductase molybdopterin binding domain NRL03_01105 PF06496 Protein of unknown function (DUF1097) NRL03_01110 PF00158 Sigma-54 interaction domain NRL03_01110 PF00072 Response regulator receiver domain NRL03_01120 PF00512 His Kinase A (phospho-acceptor) domain NRL03_01120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_01140 PF00571 CBS domain NRL03_01140 PF00478 IMP dehydrogenase / GMP reductase domain NRL03_01150 PF01037 Lrp/AsnC ligand binding domain NRL03_01155 PF03590 Aspartate-ammonia ligase NRL03_01165 PF10431 C-terminal, D2-small domain, of ClpB protein NRL03_01165 PF00004 ATPase family associated with various cellular activities (AAA) NRL03_01165 PF07724 AAA domain (Cdc48 subfamily) NRL03_01165 PF17871 AAA lid domain NRL03_01165 PF02861 Clp amino terminal domain, pathogenicity island component NRL03_01170 PF02578 Multi-copper polyphenol oxidoreductase laccase NRL03_01175 PF01479 S4 domain NRL03_01175 PF00849 RNA pseudouridylate synthase NRL03_01180 PF13525 Outer membrane lipoprotein NRL03_01185 PF03313 Serine dehydratase alpha chain NRL03_01190 PF13309 HTH domain NRL03_01190 PF08348 YheO-like PAS domain NRL03_01200 PF01609 Transposase DDE domain NRL03_01210 PF00384 Molybdopterin oxidoreductase NRL03_01210 PF18364 Molybdopterin oxidoreductase N-terminal domain NRL03_01210 PF01568 Molydopterin dinucleotide binding domain NRL03_01215 PF03264 NapC/NirT cytochrome c family, N-terminal region NRL03_01220 PF01751 Toprim domain NRL03_01220 PF01131 DNA topoisomerase NRL03_01225 PF01610 Transposase NRL03_01225 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_01225 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_01240 PF12852 Cupin NRL03_01240 PF12833 Helix-turn-helix domain NRL03_01245 PF02386 Cation transport protein NRL03_01250 PF02080 TrkA-C domain NRL03_01250 PF02254 TrkA-N domain NRL03_01255 PF01565 FAD binding domain NRL03_01255 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NRL03_01260 PF08279 HTH domain NRL03_01260 PF02237 Biotin protein ligase C terminal domain NRL03_01260 PF03099 Biotin/lipoate A/B protein ligase family NRL03_01265 PF00485 Phosphoribulokinase / Uridine kinase family NRL03_01280 PF00009 Elongation factor Tu GTP binding domain NRL03_01280 PF03144 Elongation factor Tu domain 2 NRL03_01280 PF03143 Elongation factor Tu C-terminal domain NRL03_01290 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NRL03_01295 PF00467 KOW motif NRL03_01295 PF02357 Transcription termination factor nusG NRL03_01300 PF03946 Ribosomal protein L11, N-terminal domain NRL03_01300 PF00298 Ribosomal protein L11, RNA binding domain NRL03_01305 PF00687 Ribosomal protein L1p/L10e family NRL03_01310 PF00466 Ribosomal protein L10 NRL03_01315 PF16320 Ribosomal protein L7/L12 dimerisation domain NRL03_01315 PF00542 Ribosomal protein L7/L12 C-terminal domain NRL03_01320 PF04563 RNA polymerase beta subunit NRL03_01320 PF04561 RNA polymerase Rpb2, domain 2 NRL03_01320 PF04565 RNA polymerase Rpb2, domain 3 NRL03_01320 PF10385 RNA polymerase beta subunit external 1 domain NRL03_01320 PF00562 RNA polymerase Rpb2, domain 6 NRL03_01320 PF04560 RNA polymerase Rpb2, domain 7 NRL03_01325 PF04998 RNA polymerase Rpb1, domain 5 NRL03_01325 PF04983 RNA polymerase Rpb1, domain 3 NRL03_01325 PF05000 RNA polymerase Rpb1, domain 4 NRL03_01325 PF04997 RNA polymerase Rpb1, domain 1 NRL03_01325 PF00623 RNA polymerase Rpb1, domain 2 NRL03_01330 PF13309 HTH domain NRL03_01330 PF08348 YheO-like PAS domain NRL03_01335 PF01042 Endoribonuclease L-PSP NRL03_01340 PF02635 DsrE/DsrF-like family NRL03_01345 PF02635 DsrE/DsrF-like family NRL03_01350 PF04077 DsrH like protein NRL03_01355 PF00164 Ribosomal protein S12/S23 NRL03_01360 PF00177 Ribosomal protein S7p/S5e NRL03_01365 PF14492 Elongation Factor G, domain II NRL03_01365 PF03764 Elongation factor G, domain IV NRL03_01365 PF00009 Elongation factor Tu GTP binding domain NRL03_01365 PF03144 Elongation factor Tu domain 2 NRL03_01365 PF00679 Elongation factor G C-terminus NRL03_01370 PF00009 Elongation factor Tu GTP binding domain NRL03_01370 PF03144 Elongation factor Tu domain 2 NRL03_01370 PF03143 Elongation factor Tu C-terminal domain NRL03_01410 PF03079 ARD/ARD' family NRL03_01420 PF00860 Permease family NRL03_01425 PF02733 Dak1 domain NRL03_01430 PF02734 DAK2 domain NRL03_01435 PF00381 PTS HPr component phosphorylation site NRL03_01435 PF00391 PEP-utilising enzyme, mobile domain NRL03_01435 PF05524 PEP-utilising enzyme, N-terminal NRL03_01435 PF03610 PTS system fructose IIA component NRL03_01440 PF00158 Sigma-54 interaction domain NRL03_01440 PF00989 PAS fold NRL03_01440 PF02954 Bacterial regulatory protein, Fis family NRL03_01445 PF03466 LysR substrate binding domain NRL03_01445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_01450 PF04371 Porphyromonas-type peptidyl-arginine deiminase NRL03_01455 PF00795 Carbon-nitrogen hydrolase NRL03_01460 PF13416 Bacterial extracellular solute-binding protein NRL03_01465 PF04371 Porphyromonas-type peptidyl-arginine deiminase NRL03_01470 PF00106 short chain dehydrogenase NRL03_01475 PF01594 AI-2E family transporter NRL03_01480 PF00293 NUDIX domain NRL03_01500 PF06628 Catalase-related immune-responsive NRL03_01500 PF00199 Catalase NRL03_01505 PF00583 Acetyltransferase (GNAT) family NRL03_01525 PF00990 Diguanylate cyclase, GGDEF domain NRL03_01525 PF00072 Response regulator receiver domain NRL03_01535 PF08402 TOBE domain NRL03_01535 PF00005 ABC transporter NRL03_01545 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_01560 PF00392 Bacterial regulatory proteins, gntR family NRL03_01560 PF07702 UTRA domain NRL03_01570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_01570 PF03466 LysR substrate binding domain NRL03_01580 PF17954 Quercetinase C-terminal cupin domain NRL03_01580 PF02678 Pirin NRL03_01585 PF07681 DoxX NRL03_01590 PF17946 RecC C-terminal domain NRL03_01595 PF13361 UvrD-like helicase C-terminal domain NRL03_01595 PF12705 PD-(D/E)XK nuclease superfamily NRL03_01595 PF00580 UvrD/REP helicase N-terminal domain NRL03_01600 PF13538 UvrD-like helicase C-terminal domain NRL03_01605 PF00912 Transglycosylase NRL03_01605 PF00905 Penicillin binding protein transpeptidase domain NRL03_01605 PF17092 Penicillin-binding protein OB-like domain NRL03_01630 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRL03_01640 PF00909 Ammonium Transporter Family NRL03_01645 PF00543 Nitrogen regulatory protein P-II NRL03_01650 PF00990 Diguanylate cyclase, GGDEF domain NRL03_01650 PF08448 PAS fold NRL03_01660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL03_01660 PF00672 HAMP domain NRL03_01670 PF00072 Response regulator receiver domain NRL03_01670 PF00486 Transcriptional regulatory protein, C terminal NRL03_01675 PF00512 His Kinase A (phospho-acceptor) domain NRL03_01675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_01675 PF00672 HAMP domain NRL03_01680 PF00313 'Cold-shock' DNA-binding domain NRL03_01700 PF00436 Single-strand binding protein family NRL03_01705 PF00196 Bacterial regulatory proteins, luxR family NRL03_01710 PF17755 UvrA DNA-binding domain NRL03_01710 PF17760 UvrA interaction domain NRL03_01710 PF00005 ABC transporter NRL03_01715 PF01609 Transposase DDE domain NRL03_01715 PF13808 DDE_Tnp_1-associated NRL03_01720 PF03922 OmpW family NRL03_01725 PF12729 Four helix bundle sensory module for signal transduction NRL03_01725 PF00672 HAMP domain NRL03_01725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL03_01740 PF02219 Methylenetetrahydrofolate reductase NRL03_01750 PF03594 Benzoate membrane transport protein NRL03_01755 PF01381 Helix-turn-helix NRL03_01755 PF07883 Cupin domain NRL03_01790 PF04363 Protein of unknown function (DUF496) NRL03_01800 PF04751 Protein of unknown function (DUF615) NRL03_01805 PF01523 Putative modulator of DNA gyrase NRL03_01820 PF07219 HemY protein N-terminus NRL03_01820 PF07719 Tetratricopeptide repeat NRL03_01825 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase NRL03_01830 PF02602 Uroporphyrinogen-III synthase HemD NRL03_01835 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NRL03_01835 PF03900 Porphobilinogen deaminase, C-terminal domain NRL03_01840 PF12633 Adenylate cyclase NT domain NRL03_01840 PF01295 Adenylate cyclase, class-I NRL03_01845 PF02230 Phospholipase/Carboxylesterase NRL03_01850 PF01491 Frataxin-like domain NRL03_01860 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NRL03_01860 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NRL03_01865 PF01678 Diaminopimelate epimerase NRL03_01875 PF00589 Phage integrase family NRL03_01875 PF02899 Phage integrase, N-terminal SAM-like domain NRL03_01880 PF13419 Haloacid dehalogenase-like hydrolase NRL03_01890 PF07722 Peptidase C26 NRL03_01905 PF04307 LexA-binding, inner membrane-associated putative hydrolase NRL03_01910 PF00994 Probable molybdopterin binding domain NRL03_01910 PF02464 Competence-damaged protein NRL03_01920 PF04204 Homoserine O-succinyltransferase NRL03_01930 PF01037 Lrp/AsnC ligand binding domain NRL03_01935 PF00884 Sulfatase NRL03_01945 PF16657 Maltogenic Amylase, C-terminal domain NRL03_01945 PF02903 Alpha amylase, N-terminal ig-like domain NRL03_01945 PF00128 Alpha amylase, catalytic domain NRL03_01950 PF02308 MgtC family NRL03_01970 PF00106 short chain dehydrogenase NRL03_01985 PF00465 Iron-containing alcohol dehydrogenase NRL03_01995 PF01053 Cys/Met metabolism PLP-dependent enzyme NRL03_02005 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRL03_02005 PF12793 Sugar transport-related sRNA regulator N-term NRL03_02025 PF00561 alpha/beta hydrolase fold NRL03_02035 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NRL03_02035 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NRL03_02040 PF02698 DUF218 domain NRL03_02045 PF08453 Peptidase family M9 N-terminal NRL03_02045 PF01752 Collagenase NRL03_02050 PF13193 AMP-binding enzyme C-terminal domain NRL03_02050 PF00501 AMP-binding enzyme NRL03_02055 PF13378 Enolase C-terminal domain-like NRL03_02060 PF00378 Enoyl-CoA hydratase/isomerase NRL03_02065 PF12697 Alpha/beta hydrolase family NRL03_02070 PF16582 Middle domain of thiamine pyrophosphate NRL03_02070 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRL03_02070 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NRL03_02075 PF00425 chorismate binding enzyme NRL03_02080 PF01040 UbiA prenyltransferase family NRL03_02100 PF00271 Helicase conserved C-terminal domain NRL03_02100 PF03880 DbpA RNA binding domain NRL03_02100 PF00270 DEAD/DEAH box helicase NRL03_02105 PF07670 Nucleoside recognition NRL03_02105 PF07662 Na+ dependent nucleoside transporter C-terminus NRL03_02105 PF01773 Na+ dependent nucleoside transporter N-terminus NRL03_02120 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 NRL03_02125 PF01544 CorA-like Mg2+ transporter protein NRL03_02140 PF00999 Sodium/hydrogen exchanger family NRL03_02140 PF03471 Transporter associated domain NRL03_02140 PF02080 TrkA-C domain NRL03_02145 PF05068 Mannitol repressor NRL03_02150 PF08125 Mannitol dehydrogenase C-terminal domain NRL03_02150 PF01232 Mannitol dehydrogenase Rossmann domain NRL03_02155 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRL03_02155 PF02378 Phosphotransferase system, EIIC NRL03_02155 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NRL03_02160 PF17876 Cold shock domain NRL03_02160 PF08206 Ribonuclease B OB domain NRL03_02160 PF00773 RNB domain NRL03_02165 PF03466 LysR substrate binding domain NRL03_02165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_02170 PF00765 Autoinducer synthase NRL03_02175 PF00196 Bacterial regulatory proteins, luxR family NRL03_02175 PF03472 Autoinducer binding domain NRL03_02180 PF01810 LysE type translocator NRL03_02185 PF02872 5'-nucleotidase, C-terminal domain NRL03_02185 PF00149 Calcineurin-like phosphoesterase NRL03_02190 PF03279 Bacterial lipid A biosynthesis acyltransferase NRL03_02195 PF01467 Cytidylyltransferase-like NRL03_02195 PF00294 pfkB family carbohydrate kinase NRL03_02200 PF02321 Outer membrane efflux protein NRL03_02205 PF00293 NUDIX domain NRL03_02210 PF06853 Protein of unknown function (DUF1249) NRL03_02215 PF00149 Calcineurin-like phosphoesterase NRL03_02220 PF05728 Uncharacterised protein family (UPF0227) NRL03_02225 PF00293 NUDIX domain NRL03_02235 PF07869 Protein of unknown function (DUF1656) NRL03_02240 PF00529 HlyD membrane-fusion protein of T1SS NRL03_02240 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRL03_02245 PF04632 Fusaric acid resistance protein family NRL03_02250 PF00986 DNA gyrase B subunit, carboxyl terminus NRL03_02250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_02250 PF00204 DNA gyrase B NRL03_02250 PF01751 Toprim domain NRL03_02255 PF03989 DNA gyrase C-terminal domain, beta-propeller NRL03_02255 PF00521 DNA gyrase/topoisomerase IV, subunit A NRL03_02265 PF01609 Transposase DDE domain NRL03_02265 PF13808 DDE_Tnp_1-associated NRL03_02305 PF00684 DnaJ central domain NRL03_02305 PF00226 DnaJ domain NRL03_02305 PF01556 DnaJ C terminal domain NRL03_02315 PF00578 AhpC/TSA family NRL03_02335 PF01553 Acyltransferase NRL03_02340 PF04012 PspA/IM30 family NRL03_02355 PF01541 GIY-YIG catalytic domain NRL03_02360 PF00892 EamA-like transporter family NRL03_02365 PF03167 Uracil DNA glycosylase superfamily NRL03_02375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_02375 PF03466 LysR substrate binding domain NRL03_02380 PF00950 ABC 3 transport family NRL03_02385 PF00005 ABC transporter NRL03_02390 PF01297 Zinc-uptake complex component A periplasmic NRL03_02410 PF01551 Peptidase family M23 NRL03_02410 PF08525 Opacity-associated protein A N-terminal motif NRL03_02410 PF01476 LysM domain NRL03_02415 PF13006 Insertion element 4 transposase N-terminal NRL03_02415 PF01609 Transposase DDE domain NRL03_02420 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRL03_02425 PF04222 Protein of unknown function (DUF416) NRL03_02430 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_02430 PF01610 Transposase NRL03_02430 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_02455 PF00892 EamA-like transporter family NRL03_02460 PF01037 Lrp/AsnC ligand binding domain NRL03_02465 PF12464 Maltose acetyltransferase NRL03_02465 PF14602 Hexapeptide repeat of succinyl-transferase NRL03_02470 PF00128 Alpha amylase, catalytic domain NRL03_02470 PF11941 Domain of unknown function (DUF3459) NRL03_02475 PF02378 Phosphotransferase system, EIIC NRL03_02475 PF00367 phosphotransferase system, EIIB NRL03_02480 PF00356 Bacterial regulatory proteins, lacI family NRL03_02495 PF17763 Glutaminase/Asparaginase C-terminal domain NRL03_02495 PF00710 Asparaginase, N-terminal NRL03_02510 PF02142 MGS-like domain NRL03_02515 PF00210 Ferritin-like domain NRL03_02530 PF17176 tRNA-binding domain NRL03_02530 PF05127 Helicase NRL03_02530 PF13718 GNAT acetyltransferase 2 NRL03_02530 PF08351 Domain of unknown function (DUF1726) NRL03_02535 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NRL03_02535 PF02790 Cytochrome C oxidase subunit II, transmembrane domain NRL03_02540 PF00115 Cytochrome C and Quinol oxidase polypeptide I NRL03_02545 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 NRL03_02550 PF00510 Cytochrome c oxidase subunit III NRL03_02575 PF01040 UbiA prenyltransferase family NRL03_02595 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_02600 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_02605 PF08402 TOBE domain NRL03_02605 PF00005 ABC transporter NRL03_02610 PF13416 Bacterial extracellular solute-binding protein NRL03_02615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_02615 PF03466 LysR substrate binding domain NRL03_02620 PF03553 Na+/H+ antiporter family NRL03_02650 PF00534 Glycosyl transferases group 1 NRL03_02650 PF08323 Starch synthase catalytic domain NRL03_02660 PF05175 Methyltransferase small domain NRL03_02660 PF08468 Methyltransferase small domain N-terminal NRL03_02665 PF00701 Dihydrodipicolinate synthetase family NRL03_02670 PF00563 EAL domain NRL03_02670 PF00360 Phytochrome region NRL03_02670 PF00990 Diguanylate cyclase, GGDEF domain NRL03_02670 PF01590 GAF domain NRL03_02675 PF13419 Haloacid dehalogenase-like hydrolase NRL03_02680 PF17209 Hfq protein NRL03_02685 PF04403 Paraquat-inducible protein A NRL03_02690 PF02470 MlaD protein NRL03_02695 PF03886 ABC-type transport auxiliary lipoprotein component NRL03_02700 PF00691 OmpA family NRL03_02700 PF01389 OmpA-like transmembrane domain NRL03_02705 PF00657 GDSL-like Lipase/Acylhydrolase NRL03_02715 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain NRL03_02715 PF01464 Transglycosylase SLT domain NRL03_02720 PF04362 Bacterial Fe(2+) trafficking NRL03_02725 PF10576 Iron-sulfur binding domain of endonuclease III NRL03_02725 PF00633 Helix-hairpin-helix motif NRL03_02725 PF00730 HhH-GPD superfamily base excision DNA repair protein NRL03_02725 PF14815 NUDIX domain NRL03_02730 PF16537 Type II secretion system protein B NRL03_02735 PF13401 AAA domain NRL03_02735 PF01471 Putative peptidoglycan binding domain NRL03_02740 PF12627 Probable RNA and SrmB- binding site of polymerase A NRL03_02740 PF01743 Poly A polymerase head domain NRL03_02740 PF01966 HD domain NRL03_02745 PF01384 Phosphate transporter family NRL03_02750 PF01865 Protein of unknown function DUF47 NRL03_02755 PF01928 CYTH domain NRL03_02760 PF05433 Glycine zipper 2TM domain NRL03_02770 PF00557 Metallopeptidase family M24 NRL03_02770 PF01321 Creatinase/Prolidase N-terminal domain NRL03_02775 PF00392 Bacterial regulatory proteins, gntR family NRL03_02780 PF01293 Phosphoenolpyruvate carboxykinase NRL03_02785 PF01430 Hsp33 protein NRL03_02790 PF01479 S4 domain NRL03_02795 PF11356 Type II secretion system protein C NRL03_02800 PF03958 Bacterial type II/III secretion system short domain NRL03_02800 PF00263 Bacterial type II and III secretion system protein NRL03_02805 PF00437 Type II/IV secretion system protein NRL03_02810 PF00482 Type II secretion system (T2SS), protein F NRL03_02815 PF08334 Type II secretion system (T2SS), protein G NRL03_02815 PF07963 Prokaryotic N-terminal methylation motif NRL03_02820 PF12019 Type II transport protein GspH NRL03_02820 PF07963 Prokaryotic N-terminal methylation motif NRL03_02825 PF07963 Prokaryotic N-terminal methylation motif NRL03_02825 PF02501 Type II secretion system (T2SS), protein I NRL03_02830 PF07963 Prokaryotic N-terminal methylation motif NRL03_02830 PF11612 Type II secretion system (T2SS), protein J NRL03_02840 PF03934 Type II secretion system (T2SS), protein K NRL03_02845 PF05134 Type II secretion system (T2SS), protein L NRL03_02845 PF12693 GspL periplasmic domain NRL03_02850 PF04612 Type II secretion system (T2SS), protein M NRL03_02855 PF01203 Type II secretion system (T2SS), protein N NRL03_02860 PF00196 Bacterial regulatory proteins, luxR family NRL03_02865 PF01479 S4 domain NRL03_02865 PF00579 tRNA synthetases class I (W and Y) NRL03_02870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_02870 PF03466 LysR substrate binding domain NRL03_02875 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NRL03_02880 PF13419 Haloacid dehalogenase-like hydrolase NRL03_02885 PF00293 NUDIX domain NRL03_02890 PF00459 Inositol monophosphatase family NRL03_02895 PF03222 Tryptophan/tyrosine permease family NRL03_02900 PF01588 Putative tRNA binding domain NRL03_02905 PF02311 AraC-like ligand binding domain NRL03_02905 PF12833 Helix-turn-helix domain NRL03_02910 PF01340 Met Apo-repressor, MetJ NRL03_02915 PF01053 Cys/Met metabolism PLP-dependent enzyme NRL03_02920 PF00696 Amino acid kinase family NRL03_02920 PF00742 Homoserine dehydrogenase NRL03_02920 PF03447 Homoserine dehydrogenase, NAD binding domain NRL03_02925 PF04172 LrgB-like family NRL03_02930 PF03788 LrgA family NRL03_02935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_02935 PF03466 LysR substrate binding domain NRL03_02950 PF00392 Bacterial regulatory proteins, gntR family NRL03_02950 PF00155 Aminotransferase class I and II NRL03_02970 PF04073 Aminoacyl-tRNA editing domain NRL03_02975 PF00563 EAL domain NRL03_02975 PF00990 Diguanylate cyclase, GGDEF domain NRL03_02975 PF05231 MASE1 NRL03_02975 PF08447 PAS fold NRL03_02975 PF08448 PAS fold NRL03_02975 PF13426 PAS domain NRL03_02980 PF00311 Phosphoenolpyruvate carboxylase NRL03_02985 PF07687 Peptidase dimerisation domain NRL03_02985 PF01546 Peptidase family M20/M25/M40 NRL03_02990 PF01118 Semialdehyde dehydrogenase, NAD binding domain NRL03_02990 PF02774 Semialdehyde dehydrogenase, dimerisation domain NRL03_02995 PF00696 Amino acid kinase family NRL03_03000 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NRL03_03000 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NRL03_03005 PF00764 Arginosuccinate synthase NRL03_03010 PF14698 Argininosuccinate lyase C-terminal NRL03_03010 PF00206 Lyase NRL03_03015 PF01610 Transposase NRL03_03015 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_03015 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_03020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_03020 PF03466 LysR substrate binding domain NRL03_03030 PF14552 Tautomerase enzyme NRL03_03060 PF14602 Hexapeptide repeat of succinyl-transferase NRL03_03060 PF12464 Maltose acetyltransferase NRL03_03065 PF13194 Domain of unknown function (DUF4010) NRL03_03070 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL03_03075 PF00005 ABC transporter NRL03_03080 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_03085 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_03090 PF00291 Pyridoxal-phosphate dependent enzyme NRL03_03095 PF00326 Prolyl oligopeptidase family NRL03_03095 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NRL03_03110 PF08335 GlnD PII-uridylyltransferase NRL03_03110 PF03710 Glutamate-ammonia ligase adenylyltransferase NRL03_03120 PF02743 Cache domain NRL03_03120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL03_03120 PF00672 HAMP domain NRL03_03125 PF00027 Cyclic nucleotide-binding domain NRL03_03125 PF00520 Ion transport protein NRL03_03130 PF08239 Bacterial SH3 domain NRL03_03135 PF09297 NADH pyrophosphatase zinc ribbon domain NRL03_03135 PF00293 NUDIX domain NRL03_03140 PF01208 Uroporphyrinogen decarboxylase (URO-D) NRL03_03145 PF00480 ROK family NRL03_03150 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NRL03_03150 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NRL03_03155 PF00162 Phosphoglycerate kinase NRL03_03160 PF01116 Fructose-bisphosphate aldolase class-II NRL03_03165 PF01266 FAD dependent oxidoreductase NRL03_03175 PF02683 Cytochrome C biogenesis protein transmembrane region NRL03_03175 PF11412 Disulphide bond corrector protein DsbC NRL03_03180 PF03091 CutA1 divalent ion tolerance protein NRL03_03195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_03195 PF03466 LysR substrate binding domain NRL03_03200 PF01571 Aminomethyltransferase folate-binding domain NRL03_03205 PF03937 Flavinator of succinate dehydrogenase NRL03_03215 PF00890 FAD binding domain NRL03_03215 PF02910 Fumarate reductase flavoprotein C-term NRL03_03220 PF04542 Sigma-70 region 2 NRL03_03220 PF08281 Sigma-70, region 4 NRL03_03225 PF03872 Anti sigma-E protein RseA, N-terminal domain NRL03_03225 PF03873 Anti sigma-E protein RseA, C-terminal domain NRL03_03230 PF17188 MucB/RseB C-terminal domain NRL03_03230 PF03888 MucB/RseB N-terminal domain NRL03_03240 PF03144 Elongation factor Tu domain 2 NRL03_03240 PF00679 Elongation factor G C-terminus NRL03_03240 PF06421 GTP-binding protein LepA C-terminus NRL03_03240 PF00009 Elongation factor Tu GTP binding domain NRL03_03245 PF10502 Signal peptidase, peptidase S26 NRL03_03250 PF14622 Ribonuclease-III-like NRL03_03250 PF00035 Double-stranded RNA binding motif NRL03_03255 PF01926 50S ribosome-binding GTPase NRL03_03255 PF07650 KH domain NRL03_03260 PF02565 Recombination protein O C terminal NRL03_03260 PF11967 Recombination protein O N terminal NRL03_03265 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ NRL03_03270 PF01510 N-acetylmuramoyl-L-alanine amidase NRL03_03275 PF07308 Protein of unknown function (DUF1456) NRL03_03280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_03280 PF00512 His Kinase A (phospho-acceptor) domain NRL03_03280 PF01627 Hpt domain NRL03_03280 PF00072 Response regulator receiver domain NRL03_03280 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NRL03_03280 PF00672 HAMP domain NRL03_03285 PF01938 TRAM domain NRL03_03285 PF05958 tRNA (Uracil-5-)-methyltransferase NRL03_03290 PF04607 Region found in RelA / SpoT proteins NRL03_03290 PF02824 TGS domain NRL03_03290 PF13291 ACT domain NRL03_03295 PF03819 MazG nucleotide pyrophosphohydrolase domain NRL03_03300 PF00117 Glutamine amidotransferase class-I NRL03_03300 PF06418 CTP synthase N-terminus NRL03_03305 PF03952 Enolase, N-terminal domain NRL03_03305 PF00113 Enolase, C-terminal TIM barrel domain NRL03_03310 PF04977 Septum formation initiator NRL03_03315 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NRL03_03320 PF02542 YgbB family NRL03_03325 PF01142 tRNA pseudouridine synthase D (TruD) NRL03_03330 PF01975 Survival protein SurE NRL03_03340 PF09335 SNARE associated Golgi protein NRL03_03345 PF01476 LysM domain NRL03_03345 PF01551 Peptidase family M23 NRL03_03350 PF00140 Sigma-70 factor, region 1.2 NRL03_03350 PF04545 Sigma-70, region 4 NRL03_03350 PF04539 Sigma-70 region 3 NRL03_03350 PF04542 Sigma-70 region 2 NRL03_03355 PF00814 Glycoprotease family NRL03_03360 PF01165 Ribosomal protein S21 NRL03_03365 PF09424 Yqey-like protein NRL03_03370 PF01807 CHC2 zinc finger NRL03_03370 PF08275 DNA primase catalytic core, N-terminal domain NRL03_03370 PF08278 DNA primase DnaG DnaB-binding NRL03_03370 PF10410 DnaB-helicase binding domain of primase NRL03_03375 PF00140 Sigma-70 factor, region 1.2 NRL03_03375 PF03979 Sigma-70 factor, region 1.1 NRL03_03375 PF04546 Sigma-70, non-essential region NRL03_03375 PF04539 Sigma-70 region 3 NRL03_03375 PF04545 Sigma-70, region 4 NRL03_03375 PF04542 Sigma-70 region 2 NRL03_03390 PF00128 Alpha amylase, catalytic domain NRL03_03405 PF01610 Transposase NRL03_03405 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_03405 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_03410 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NRL03_03410 PF02844 Phosphoribosylglycinamide synthetase, N domain NRL03_03410 PF02843 Phosphoribosylglycinamide synthetase, C domain NRL03_03415 PF01808 AICARFT/IMPCHase bienzyme NRL03_03415 PF02142 MGS-like domain NRL03_03420 PF13411 MerR HTH family regulatory protein NRL03_03430 PF03889 Alternative ribosome-rescue factor A NRL03_03435 PF04055 Radical SAM superfamily NRL03_03435 PF06969 HemN C-terminal domain NRL03_03440 PF01725 Ham1 family NRL03_03445 PF07690 Major Facilitator Superfamily NRL03_03450 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NRL03_03450 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NRL03_03460 PF01610 Transposase NRL03_03460 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_03460 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_03465 PF01957 NfeD-like C-terminal, partner-binding NRL03_03470 PF01145 SPFH domain / Band 7 family NRL03_03470 PF16200 C-terminal region of band_7 NRL03_03475 PF10414 Sirohaem synthase dimerisation region NRL03_03475 PF14824 Sirohaem biosynthesis protein central NRL03_03475 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NRL03_03480 PF01507 Phosphoadenosine phosphosulfate reductase family NRL03_03485 PF00009 Elongation factor Tu GTP binding domain NRL03_03490 PF02080 TrkA-C domain NRL03_03490 PF03600 Citrate transporter NRL03_03500 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_03500 PF01610 Transposase NRL03_03500 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_03510 PF13676 TIR domain NRL03_03530 PF08447 PAS fold NRL03_03530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL03_03540 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_03540 PF01610 Transposase NRL03_03540 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_03555 PF00005 ABC transporter NRL03_03570 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) NRL03_03585 PF00719 Inorganic pyrophosphatase NRL03_03590 PF01225 Mur ligase family, catalytic domain NRL03_03590 PF02875 Mur ligase family, glutamate ligase domain NRL03_03590 PF08245 Mur ligase middle domain NRL03_03595 PF02441 Flavoprotein NRL03_03600 PF00440 Bacterial regulatory proteins, tetR family NRL03_03605 PF00156 Phosphoribosyl transferase domain NRL03_03610 PF00005 ABC transporter NRL03_03615 PF01061 ABC-2 type transporter NRL03_03625 PF02569 Pantoate-beta-alanine ligase NRL03_03630 PF02548 Ketopantoate hydroxymethyltransferase NRL03_03635 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NRL03_03640 PF01743 Poly A polymerase head domain NRL03_03640 PF12626 Polymerase A arginine-rich C-terminus NRL03_03640 PF12627 Probable RNA and SrmB- binding site of polymerase A NRL03_03645 PF00749 tRNA synthetases class I (E and Q), catalytic domain NRL03_03650 PF01258 Prokaryotic dksA/traR C4-type zinc finger NRL03_03655 PF03749 Sugar fermentation stimulation protein RE domain NRL03_03655 PF17746 SfsA N-terminal OB domain NRL03_03665 PF04408 Helicase associated domain (HA2) NRL03_03665 PF08482 ATP-dependent helicase C-terminal NRL03_03665 PF00271 Helicase conserved C-terminal domain NRL03_03665 PF00270 DEAD/DEAH box helicase NRL03_03670 PF00905 Penicillin binding protein transpeptidase domain NRL03_03670 PF14814 Bifunctional transglycosylase second domain NRL03_03670 PF00912 Transglycosylase NRL03_03675 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRL03_03680 PF00893 Small Multidrug Resistance protein NRL03_03685 PF00893 Small Multidrug Resistance protein NRL03_03690 PF03466 LysR substrate binding domain NRL03_03690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_03700 PF01569 PAP2 superfamily NRL03_03715 PF00202 Aminotransferase class-III NRL03_03720 PF00654 Voltage gated chloride channel NRL03_03730 PF01521 Iron-sulphur cluster biosynthesis NRL03_03765 PF00317 Ribonucleotide reductase, all-alpha domain NRL03_03765 PF02867 Ribonucleotide reductase, barrel domain NRL03_03765 PF08343 Ribonucleotide reductase N-terminal NRL03_03775 PF02562 PhoH-like protein NRL03_03775 PF13638 PIN domain NRL03_03785 PF00005 ABC transporter NRL03_03790 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_03810 PF00694 Aconitase C-terminal domain NRL03_03815 PF00330 Aconitase family (aconitate hydratase) NRL03_03820 PF00180 Isocitrate/isopropylmalate dehydrogenase NRL03_03825 PF00682 HMGL-like NRL03_03825 PF08502 LeuA allosteric (dimerisation) domain NRL03_03835 PF01569 PAP2 superfamily NRL03_03850 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRL03_03850 PF00205 Thiamine pyrophosphate enzyme, central domain NRL03_03850 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NRL03_03855 PF10369 Small subunit of acetolactate synthase NRL03_03860 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_03860 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_03860 PF01610 Transposase NRL03_03865 PF01515 Phosphate acetyl/butaryl transferase NRL03_03865 PF07085 DRTGG domain NRL03_03870 PF00871 Acetokinase family NRL03_03875 PF04217 Protein of unknown function, DUF412 NRL03_03880 PF03887 YfbU domain NRL03_03885 PF00578 AhpC/TSA family NRL03_03890 PF01842 ACT domain NRL03_03895 PF00701 Dihydrodipicolinate synthetase family NRL03_03900 PF06804 NlpB/DapX lipoprotein NRL03_03905 PF01259 SAICAR synthetase NRL03_03915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_03915 PF03466 LysR substrate binding domain NRL03_03920 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) NRL03_03940 PF00512 His Kinase A (phospho-acceptor) domain NRL03_03940 PF18415 Histidine kinase receptor ArcB trans-membrane domain NRL03_03940 PF01627 Hpt domain NRL03_03940 PF00989 PAS fold NRL03_03940 PF00072 Response regulator receiver domain NRL03_03940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_03945 PF01966 HD domain NRL03_03955 PF00072 Response regulator receiver domain NRL03_03955 PF00512 His Kinase A (phospho-acceptor) domain NRL03_03955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_03955 PF09456 RcsC Alpha-Beta-Loop (ABL) NRL03_03960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_03960 PF01627 Hpt domain NRL03_03960 PF00072 Response regulator receiver domain NRL03_03960 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL03_03960 PF00512 His Kinase A (phospho-acceptor) domain NRL03_03965 PF00563 EAL domain NRL03_03965 PF00990 Diguanylate cyclase, GGDEF domain NRL03_03965 PF03707 Bacterial signalling protein N terminal repeat NRL03_03970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL03_03975 PF01610 Transposase NRL03_03975 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_03975 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_03980 PF02357 Transcription termination factor nusG NRL03_03985 PF03180 NLPA lipoprotein NRL03_03990 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_03995 PF00005 ABC transporter NRL03_03995 PF09383 NIL domain NRL03_04005 PF00480 ROK family NRL03_04010 PF08331 Domain of unknown function (DUF1730) NRL03_04015 PF03853 YjeF-related protein N-terminus NRL03_04015 PF01256 Carbohydrate kinase NRL03_04020 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NRL03_04025 PF01520 N-acetylmuramoyl-L-alanine amidase NRL03_04030 PF01119 DNA mismatch repair protein, C-terminal domain NRL03_04030 PF08676 MutL C terminal dimerisation domain NRL03_04040 PF17209 Hfq protein NRL03_04045 PF01926 50S ribosome-binding GTPase NRL03_04045 PF13167 GTP-binding GTPase N-terminal NRL03_04045 PF16360 GTP-binding GTPase Middle Region NRL03_04050 PF01145 SPFH domain / Band 7 family NRL03_04050 PF12221 Bacterial membrane protein N terminal NRL03_04055 PF01145 SPFH domain / Band 7 family NRL03_04060 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) NRL03_04065 PF00348 Polyprenyl synthetase NRL03_04070 PF00829 Ribosomal prokaryotic L21 protein NRL03_04075 PF01016 Ribosomal L27 protein NRL03_04080 PF01018 GTP1/OBG NRL03_04080 PF01926 50S ribosome-binding GTPase NRL03_04085 PF07670 Nucleoside recognition NRL03_04095 PF00296 Luciferase-like monooxygenase NRL03_04105 PF00149 Calcineurin-like phosphoesterase NRL03_04110 PF04379 ApaG domain NRL03_04115 PF00398 Ribosomal RNA adenine dimethylase NRL03_04120 PF04166 Pyridoxal phosphate biosynthetic protein PdxA NRL03_04125 PF09312 SurA N-terminal domain NRL03_04125 PF00639 PPIC-type PPIASE domain NRL03_04130 PF04453 LPS transport system D NRL03_04130 PF03968 OstA-like protein NRL03_04135 PF01636 Phosphotransferase enzyme family NRL03_04140 PF00483 Nucleotidyl transferase NRL03_04145 PF05099 Tellurite resistance protein TerB NRL03_04145 PF00226 DnaJ domain NRL03_04150 PF00860 Permease family NRL03_04160 PF00005 ABC transporter NRL03_04160 PF12848 ABC transporter NRL03_04165 PF01464 Transglycosylase SLT domain NRL03_04170 PF00535 Glycosyl transferase family 2 NRL03_04180 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase NRL03_04185 PF01370 NAD dependent epimerase/dehydratase family NRL03_04190 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NRL03_04190 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NRL03_04190 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NRL03_04200 PF00005 ABC transporter NRL03_04205 PF01032 FecCD transport family NRL03_04215 PF06228 Haem utilisation ChuX/HutX NRL03_04220 PF01243 Pyridoxamine 5'-phosphate oxidase NRL03_04240 PF07715 TonB-dependent Receptor Plug Domain NRL03_04240 PF00593 TonB dependent receptor NRL03_04245 PF12832 MFS_1 like family NRL03_04250 PF00989 PAS fold NRL03_04250 PF00512 His Kinase A (phospho-acceptor) domain NRL03_04250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_04255 PF00704 Glycosyl hydrolases family 18 NRL03_04255 PF08329 Chitinase A, N-terminal domain NRL03_04260 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_04260 PF01610 Transposase NRL03_04260 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_04265 PF13847 Methyltransferase domain NRL03_04270 PF00027 Cyclic nucleotide-binding domain NRL03_04270 PF13545 Crp-like helix-turn-helix domain NRL03_04275 PF02566 OsmC-like protein NRL03_04290 PF00485 Phosphoribulokinase / Uridine kinase family NRL03_04295 PF06794 Uncharacterised protein family (UPF0270) NRL03_04300 PF00990 Diguanylate cyclase, GGDEF domain NRL03_04300 PF00360 Phytochrome region NRL03_04300 PF01590 GAF domain NRL03_04300 PF00563 EAL domain NRL03_04305 PF00561 alpha/beta hydrolase fold NRL03_04310 PF01584 CheW-like domain NRL03_04310 PF00072 Response regulator receiver domain NRL03_04320 PF09526 Probable metal-binding protein (DUF2387) NRL03_04325 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRL03_04330 PF04102 SlyX NRL03_04340 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRL03_04340 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NRL03_04345 PF02954 Bacterial regulatory protein, Fis family NRL03_04345 PF00072 Response regulator receiver domain NRL03_04345 PF00158 Sigma-54 interaction domain NRL03_04365 PF00149 Calcineurin-like phosphoesterase NRL03_04365 PF02872 5'-nucleotidase, C-terminal domain NRL03_04375 PF00772 DnaB-like helicase N terminal domain NRL03_04375 PF03796 DnaB-like helicase C terminal domain NRL03_04380 PF00842 Alanine racemase, C-terminal domain NRL03_04380 PF01168 Alanine racemase, N-terminal domain NRL03_04385 PF00171 Aldehyde dehydrogenase family NRL03_04385 PF01619 Proline dehydrogenase NRL03_04385 PF14850 DNA-binding domain of Proline dehydrogenase NRL03_04385 PF18327 Proline utilization A proline dehydrogenase N-terminal domain NRL03_04395 PF00206 Lyase NRL03_04395 PF10415 Fumarase C C-terminus NRL03_04400 PF12801 4Fe-4S binding domain NRL03_04400 PF04205 FMN-binding domain NRL03_04405 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NRL03_04405 PF18764 Nitrous oxide reductase propeller repeat NRL03_04405 PF18793 Nitrous oxide reductase propeller repeat 2 NRL03_04410 PF05048 Periplasmic copper-binding protein (NosD) NRL03_04415 PF00005 ABC transporter NRL03_04420 PF12679 ABC-2 family transporter protein NRL03_04425 PF05573 NosL NRL03_04430 PF02416 mttA/Hcf106 family NRL03_04435 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NRL03_04440 PF03575 Peptidase family S51 NRL03_04445 PF13722 5TM C-terminal transporter carbon starvation CstA NRL03_04445 PF02554 Carbon starvation protein CstA NRL03_04450 PF04397 LytTr DNA-binding domain NRL03_04450 PF00072 Response regulator receiver domain NRL03_04455 PF07694 5TMR of 5TMR-LYT NRL03_04455 PF06580 Histidine kinase NRL03_04465 PF00563 EAL domain NRL03_04465 PF01590 GAF domain NRL03_04465 PF00990 Diguanylate cyclase, GGDEF domain NRL03_04465 PF00989 PAS fold NRL03_04470 PF13808 DDE_Tnp_1-associated NRL03_04470 PF01609 Transposase DDE domain NRL03_04495 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NRL03_04495 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NRL03_04500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_04500 PF03466 LysR substrate binding domain NRL03_04505 PF01810 LysE type translocator NRL03_04510 PF12392 Collagenase NRL03_04510 PF01136 Peptidase family U32 NRL03_04520 PF06906 Protein of unknown function (DUF1272) NRL03_04530 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NRL03_04530 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NRL03_04535 PF06029 AlkA N-terminal domain NRL03_04535 PF00730 HhH-GPD superfamily base excision DNA repair protein NRL03_04535 PF02805 Metal binding domain of Ada NRL03_04535 PF12833 Helix-turn-helix domain NRL03_04540 PF02074 Carboxypeptidase Taq (M32) metallopeptidase NRL03_04565 PF00106 short chain dehydrogenase NRL03_04570 PF03573 outer membrane porin, OprD family NRL03_04575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL03_04585 PF02447 GntP family permease NRL03_04590 PF01370 NAD dependent epimerase/dehydratase family NRL03_04595 PF01261 Xylose isomerase-like TIM barrel NRL03_04600 PF00596 Class II Aldolase and Adducin N-terminal domain NRL03_04605 PF07005 Sugar-binding N-terminal domain NRL03_04605 PF17042 Nucleotide-binding C-terminal domain NRL03_04610 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NRL03_04610 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NRL03_04615 PF08220 DeoR-like helix-turn-helix domain NRL03_04615 PF00455 DeoR C terminal sensor domain NRL03_04625 PF07995 Glucose / Sorbosone dehydrogenase NRL03_04630 PF03976 Polyphosphate kinase 2 (PPK2) NRL03_04655 PF01817 Chorismate mutase type II NRL03_04655 PF00800 Prephenate dehydratase NRL03_04680 PF08349 Protein of unknown function (DUF1722) NRL03_04685 PF13411 MerR HTH family regulatory protein NRL03_04690 PF00875 DNA photolyase NRL03_04690 PF03441 FAD binding domain of DNA photolyase NRL03_04700 PF00106 short chain dehydrogenase NRL03_04740 PF00210 Ferritin-like domain NRL03_04745 PF03063 Prismane/CO dehydrogenase family NRL03_04750 PF00175 Oxidoreductase NAD-binding domain NRL03_04750 PF00970 Oxidoreductase FAD-binding domain NRL03_04750 PF00042 Globin NRL03_04755 PF16363 GDP-mannose 4,6 dehydratase NRL03_04770 PF00873 AcrB/AcrD/AcrF family NRL03_04775 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRL03_04775 PF00529 HlyD membrane-fusion protein of T1SS NRL03_04780 PF00486 Transcriptional regulatory protein, C terminal NRL03_04780 PF00072 Response regulator receiver domain NRL03_04785 PF00512 His Kinase A (phospho-acceptor) domain NRL03_04785 PF00672 HAMP domain NRL03_04785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_04790 PF01740 STAS domain NRL03_04790 PF00916 Sulfate permease family NRL03_04795 PF01965 DJ-1/PfpI family NRL03_04800 PF02558 Ketopantoate reductase PanE/ApbA NRL03_04800 PF08546 Ketopantoate reductase PanE/ApbA C terminal NRL03_04805 PF04461 Protein of unknown function (DUF520) NRL03_04810 PF03502 Nucleoside-specific channel-forming protein, Tsx NRL03_04815 PF07690 Major Facilitator Superfamily NRL03_04825 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NRL03_04835 PF05175 Methyltransferase small domain NRL03_04840 PF01722 BolA-like protein NRL03_04845 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) NRL03_04845 PF11973 NQRA C-terminal domain NRL03_04850 PF03116 NQR2, RnfD, RnfE family NRL03_04855 PF04205 FMN-binding domain NRL03_04860 PF02508 Rnf-Nqr subunit, membrane protein NRL03_04865 PF02508 Rnf-Nqr subunit, membrane protein NRL03_04870 PF00970 Oxidoreductase FAD-binding domain NRL03_04870 PF00111 2Fe-2S iron-sulfur cluster binding domain NRL03_04870 PF00175 Oxidoreductase NAD-binding domain NRL03_04875 PF02424 ApbE family NRL03_04890 PF00817 impB/mucB/samB family NRL03_04890 PF11799 impB/mucB/samB family C-terminal domain NRL03_04890 PF11798 IMS family HHH motif NRL03_04895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL03_04895 PF00672 HAMP domain NRL03_04900 PF03466 LysR substrate binding domain NRL03_04900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_04915 PF18125 RlmM ferredoxin-like domain NRL03_04915 PF01728 FtsJ-like methyltransferase NRL03_04925 PF00180 Isocitrate/isopropylmalate dehydrogenase NRL03_04925 PF18324 Hypothetical protein TT1725 NRL03_04930 PF01367 5'-3' exonuclease, C-terminal SAM fold NRL03_04930 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NRL03_04935 PF11892 Domain of unknown function (DUF3412) NRL03_04935 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases NRL03_04935 PF03641 Possible lysine decarboxylase NRL03_04940 PF00990 Diguanylate cyclase, GGDEF domain NRL03_04950 PF14489 QueF-like protein NRL03_04950 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term NRL03_04955 PF07348 Syd protein (SUKH-2) NRL03_04960 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) NRL03_04985 PF04287 tRNA pseudouridine synthase C NRL03_04990 PF00849 RNA pseudouridylate synthase NRL03_04995 PF00258 Flavodoxin NRL03_05005 PF02264 LamB porin NRL03_05010 PF07148 Maltose operon periplasmic protein precursor (MalM) NRL03_05015 PF00367 phosphotransferase system, EIIB NRL03_05015 PF02378 Phosphotransferase system, EIIC NRL03_05020 PF11944 Protein of unknown function (DUF3461) NRL03_05025 PF00132 Bacterial transferase hexapeptide (six repeats) NRL03_05025 PF14602 Hexapeptide repeat of succinyl-transferase NRL03_05025 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal NRL03_05030 PF01909 Nucleotidyltransferase domain NRL03_05030 PF08335 GlnD PII-uridylyltransferase NRL03_05030 PF01842 ACT domain NRL03_05030 PF01966 HD domain NRL03_05035 PF00557 Metallopeptidase family M24 NRL03_05040 PF00318 Ribosomal protein S2 NRL03_05045 PF00889 Elongation factor TS NRL03_05050 PF00696 Amino acid kinase family NRL03_05055 PF01765 Ribosome recycling factor NRL03_05060 PF01255 Putative undecaprenyl diphosphate synthase NRL03_05070 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NRL03_05070 PF13288 DXP reductoisomerase C-terminal domain NRL03_05070 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NRL03_05075 PF17820 PDZ domain NRL03_05075 PF02163 Peptidase family M50 NRL03_05080 PF07244 Surface antigen variable number repeat NRL03_05080 PF01103 Surface antigen NRL03_05085 PF03938 Outer membrane protein (OmpH-like) NRL03_05090 PF00132 Bacterial transferase hexapeptide (six repeats) NRL03_05090 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD NRL03_05095 PF07977 FabA-like domain NRL03_05100 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 NRL03_05100 PF00132 Bacterial transferase hexapeptide (six repeats) NRL03_05105 PF02684 Lipid-A-disaccharide synthetase NRL03_05110 PF01351 Ribonuclease HII NRL03_05115 PF07733 Bacterial DNA polymerase III alpha NTPase domain NRL03_05115 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NRL03_05115 PF14579 Helix-hairpin-helix motif NRL03_05115 PF01336 OB-fold nucleic acid binding domain NRL03_05115 PF02811 PHP domain NRL03_05120 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NRL03_05130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_05130 PF03466 LysR substrate binding domain NRL03_05140 PF13520 Amino acid permease NRL03_05160 PF05649 Peptidase family M13 NRL03_05160 PF01431 Peptidase family M13 NRL03_05165 PF09179 TilS substrate binding domain NRL03_05165 PF11734 TilS substrate C-terminal domain NRL03_05165 PF01171 PP-loop family NRL03_05170 PF00990 Diguanylate cyclase, GGDEF domain NRL03_05175 PF02080 TrkA-C domain NRL03_05175 PF00999 Sodium/hydrogen exchanger family NRL03_05175 PF02254 TrkA-N domain NRL03_05195 PF00196 Bacterial regulatory proteins, luxR family NRL03_05195 PF00072 Response regulator receiver domain NRL03_05205 PF00128 Alpha amylase, catalytic domain NRL03_05220 PF00535 Glycosyl transferase family 2 NRL03_05235 PF03734 L,D-transpeptidase catalytic domain NRL03_05235 PF01471 Putative peptidoglycan binding domain NRL03_05240 PF05951 Bacterial protein of unknown function (DUF882) NRL03_05250 PF03458 UPF0126 domain NRL03_05260 PF02463 RecF/RecN/SMC N terminal domain NRL03_05260 PF06470 SMC proteins Flexible Hinge Domain NRL03_05265 PF04354 ZipA, C-terminal FtsZ-binding domain NRL03_05270 PF12826 Helix-hairpin-helix motif NRL03_05270 PF00533 BRCA1 C Terminus (BRCT) domain NRL03_05270 PF03120 NAD-dependent DNA ligase OB-fold domain NRL03_05270 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NRL03_05270 PF01653 NAD-dependent DNA ligase adenylation domain NRL03_05280 PF13597 Anaerobic ribonucleoside-triphosphate reductase NRL03_05280 PF03477 ATP cone domain NRL03_05290 PF01679 Proteolipid membrane potential modulator NRL03_05310 PF00529 HlyD membrane-fusion protein of T1SS NRL03_05310 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRL03_05315 PF01047 MarR family NRL03_05320 PF17203 Single cache domain 3 NRL03_05320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_05320 PF00989 PAS fold NRL03_05320 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain NRL03_05325 PF00072 Response regulator receiver domain NRL03_05325 PF12431 Transcriptional regulator NRL03_05335 PF00248 Aldo/keto reductase family NRL03_05345 PF00892 EamA-like transporter family NRL03_05355 PF00171 Aldehyde dehydrogenase family NRL03_05360 PF02954 Bacterial regulatory protein, Fis family NRL03_05360 PF00158 Sigma-54 interaction domain NRL03_05360 PF01590 GAF domain NRL03_05365 PF00990 Diguanylate cyclase, GGDEF domain NRL03_05365 PF17158 Membrane-associated sensor, integral membrane domain NRL03_05370 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRL03_05375 PF00486 Transcriptional regulatory protein, C terminal NRL03_05375 PF00072 Response regulator receiver domain NRL03_05380 PF00989 PAS fold NRL03_05380 PF00512 His Kinase A (phospho-acceptor) domain NRL03_05380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_05380 PF11808 Phosphate regulon sensor protein PhoR NRL03_05385 PF12849 PBP superfamily domain NRL03_05390 PF01435 Peptidase family M48 NRL03_05400 PF00480 ROK family NRL03_05405 PF03932 CutC family NRL03_05425 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NRL03_05425 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRL03_05430 PF00005 ABC transporter NRL03_05445 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL03_05450 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_05455 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_05460 PF00005 ABC transporter NRL03_05470 PF00293 NUDIX domain NRL03_05475 PF08534 Redoxin NRL03_05480 PF01699 Sodium/calcium exchanger protein NRL03_05485 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NRL03_05485 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NRL03_05490 PF01235 Sodium:alanine symporter family NRL03_05500 PF00860 Permease family NRL03_05505 PF00072 Response regulator receiver domain NRL03_05505 PF00990 Diguanylate cyclase, GGDEF domain NRL03_05510 PF10692 Protein of unknown function (DUF2498) NRL03_05515 PF01554 MatE NRL03_05520 PF12833 Helix-turn-helix domain NRL03_05525 PF03949 Malic enzyme, NAD binding domain NRL03_05525 PF00390 Malic enzyme, N-terminal domain NRL03_05530 PF00691 OmpA family NRL03_05530 PF01389 OmpA-like transmembrane domain NRL03_05535 PF00691 OmpA family NRL03_05535 PF01389 OmpA-like transmembrane domain NRL03_05540 PF01389 OmpA-like transmembrane domain NRL03_05540 PF00691 OmpA family NRL03_05555 PF01609 Transposase DDE domain NRL03_05555 PF13006 Insertion element 4 transposase N-terminal NRL03_05560 PF00209 Sodium:neurotransmitter symporter family NRL03_05565 PF01734 Patatin-like phospholipase NRL03_05570 PF00990 Diguanylate cyclase, GGDEF domain NRL03_05570 PF17158 Membrane-associated sensor, integral membrane domain NRL03_05580 PF00873 AcrB/AcrD/AcrF family NRL03_05585 PF11842 Domain of unknown function (DUF3362) NRL03_05585 PF08497 Radical SAM N-terminal NRL03_05585 PF04055 Radical SAM superfamily NRL03_05605 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NRL03_05610 PF02075 Crossover junction endodeoxyribonuclease RuvC NRL03_05625 PF01464 Transglycosylase SLT domain NRL03_05625 PF10145 Phage-related minor tail protein NRL03_05625 PF01551 Peptidase family M23 NRL03_05640 PF13396 Phospholipase_D-nuclease N-terminal NRL03_05640 PF13091 PLD-like domain NRL03_05650 PF00551 Formyl transferase NRL03_05650 PF01842 ACT domain NRL03_05655 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NRL03_05665 PF00085 Thioredoxin NRL03_05670 PF01648 4'-phosphopantetheinyl transferase superfamily NRL03_05680 PF00877 NlpC/P60 family NRL03_05685 PF01610 Transposase NRL03_05685 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_05685 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_05690 PF05971 RNA methyltransferase NRL03_05695 PF01575 MaoC like domain NRL03_05705 PF17969 L,D-transpeptidase C-terminal domain NRL03_05705 PF03734 L,D-transpeptidase catalytic domain NRL03_05705 PF01476 LysM domain NRL03_05735 PF10725 Protein of unknown function (DUF2517) NRL03_05740 PF00989 PAS fold NRL03_05740 PF00512 His Kinase A (phospho-acceptor) domain NRL03_05740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_05740 PF01627 Hpt domain NRL03_05740 PF00072 Response regulator receiver domain NRL03_05740 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL03_05745 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase NRL03_05750 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NRL03_05750 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRL03_05755 PF02690 Na+/Pi-cotransporter NRL03_05765 PF13520 Amino acid permease NRL03_05770 PF00324 Amino acid permease NRL03_05780 PF00202 Aminotransferase class-III NRL03_05785 PF00171 Aldehyde dehydrogenase family NRL03_05790 PF07883 Cupin domain NRL03_05790 PF01381 Helix-turn-helix NRL03_05795 PF01266 FAD dependent oxidoreductase NRL03_05825 PF00072 Response regulator receiver domain NRL03_05825 PF02954 Bacterial regulatory protein, Fis family NRL03_05825 PF00158 Sigma-54 interaction domain NRL03_05830 PF02254 TrkA-N domain NRL03_05830 PF00999 Sodium/hydrogen exchanger family NRL03_05845 PF04381 Putative exonuclease, RdgC NRL03_05850 PF00583 Acetyltransferase (GNAT) family NRL03_05855 PF12320 Type 5 capsule protein repressor C-terminal domain NRL03_05855 PF00149 Calcineurin-like phosphoesterase NRL03_05865 PF01292 Prokaryotic cytochrome b561 NRL03_05870 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NRL03_05875 PF05524 PEP-utilising enzyme, N-terminal NRL03_05875 PF00391 PEP-utilising enzyme, mobile domain NRL03_05875 PF02896 PEP-utilising enzyme, TIM barrel domain NRL03_05880 PF00381 PTS HPr component phosphorylation site NRL03_05885 PF00291 Pyridoxal-phosphate dependent enzyme NRL03_05890 PF00004 ATPase family associated with various cellular activities (AAA) NRL03_05890 PF01434 Peptidase family M41 NRL03_05890 PF06480 FtsH Extracellular NRL03_05890 PF17862 AAA+ lid domain NRL03_05900 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NRL03_05900 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NRL03_05905 PF01980 tRNA-methyltransferase O NRL03_05905 PF18389 TrmO C-terminal domain NRL03_05925 PF00664 ABC transporter transmembrane region NRL03_05925 PF00005 ABC transporter NRL03_05930 PF00664 ABC transporter transmembrane region NRL03_05930 PF00005 ABC transporter NRL03_05945 PF00072 Response regulator receiver domain NRL03_05945 PF00486 Transcriptional regulatory protein, C terminal NRL03_05955 PF03737 Aldolase/RraA NRL03_05970 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) NRL03_05975 PF00588 SpoU rRNA Methylase family NRL03_05980 PF01842 ACT domain NRL03_05980 PF13840 ACT domain NRL03_05980 PF00742 Homoserine dehydrogenase NRL03_05980 PF00696 Amino acid kinase family NRL03_05980 PF03447 Homoserine dehydrogenase, NAD binding domain NRL03_05985 PF08544 GHMP kinases C terminal NRL03_05985 PF00288 GHMP kinases N terminal domain NRL03_05990 PF00291 Pyridoxal-phosphate dependent enzyme NRL03_05990 PF14821 Threonine synthase N terminus NRL03_06035 PF01609 Transposase DDE domain NRL03_06050 PF02028 BCCT, betaine/carnitine/choline family transporter NRL03_06060 PF05114 Protein of unknown function (DUF692) NRL03_06085 PF08447 PAS fold NRL03_06085 PF13426 PAS domain NRL03_06085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL03_06100 PF04632 Fusaric acid resistance protein family NRL03_06105 PF03205 Molybdopterin guanine dinucleotide synthesis protein B NRL03_06110 PF12804 MobA-like NTP transferase domain NRL03_06115 PF03949 Malic enzyme, NAD binding domain NRL03_06115 PF00390 Malic enzyme, N-terminal domain NRL03_06125 PF00860 Permease family NRL03_06135 PF10282 Lactonase, 7-bladed beta-propeller NRL03_06145 PF01810 LysE type translocator NRL03_06150 PF02796 Helix-turn-helix domain of resolvase NRL03_06150 PF00239 Resolvase, N terminal domain NRL03_06155 PF01609 Transposase DDE domain NRL03_06155 PF13006 Insertion element 4 transposase N-terminal NRL03_06185 PF08401 Domain of unknown function (DUF1738) NRL03_06185 PF18818 Metallopeptidase superfamily domain NRL03_06185 PF13362 Toprim domain NRL03_06220 PF12794 Mechanosensitive ion channel inner membrane domain 1 NRL03_06220 PF00924 Mechanosensitive ion channel NRL03_06220 PF12795 Mechanosensitive ion channel porin domain NRL03_06225 PF02887 Pyruvate kinase, alpha/beta domain NRL03_06225 PF00224 Pyruvate kinase, barrel domain NRL03_06230 PF08007 Cupin superfamily protein NRL03_06235 PF08328 Adenylosuccinate lyase C-terminal NRL03_06235 PF00206 Lyase NRL03_06240 PF04356 Protein of unknown function (DUF489) NRL03_06250 PF00293 NUDIX domain NRL03_06255 PF00849 RNA pseudouridylate synthase NRL03_06260 PF00583 Acetyltransferase (GNAT) family NRL03_06295 PF00180 Isocitrate/isopropylmalate dehydrogenase NRL03_06305 PF00291 Pyridoxal-phosphate dependent enzyme NRL03_06310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_06310 PF03466 LysR substrate binding domain NRL03_06315 PF00816 H-NS histone family NRL03_06320 PF00793 DAHP synthetase I family NRL03_06325 PF04954 Siderophore-interacting protein NRL03_06325 PF08021 Siderophore-interacting FAD-binding domain NRL03_06330 PF02321 Outer membrane efflux protein NRL03_06335 PF00005 ABC transporter NRL03_06335 PF02687 FtsX-like permease family NRL03_06335 PF12704 MacB-like periplasmic core domain NRL03_06340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRL03_06350 PF02463 RecF/RecN/SMC N terminal domain NRL03_06355 PF17158 Membrane-associated sensor, integral membrane domain NRL03_06355 PF00990 Diguanylate cyclase, GGDEF domain NRL03_06360 PF01513 ATP-NAD kinase NRL03_06365 PF01025 GrpE NRL03_06370 PF00012 Hsp70 protein NRL03_06375 PF00684 DnaJ central domain NRL03_06375 PF01556 DnaJ C terminal domain NRL03_06375 PF00226 DnaJ domain NRL03_06380 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_06380 PF01610 Transposase NRL03_06380 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_06385 PF11471 Maltoporin periplasmic N-terminal extension NRL03_06385 PF02264 LamB porin NRL03_06390 PF00294 pfkB family carbohydrate kinase NRL03_06395 PF00367 phosphotransferase system, EIIB NRL03_06395 PF02378 Phosphotransferase system, EIIC NRL03_06400 PF08244 Glycosyl hydrolases family 32 C terminal NRL03_06400 PF00251 Glycosyl hydrolases family 32 N-terminal domain NRL03_06405 PF00356 Bacterial regulatory proteins, lacI family NRL03_06405 PF13407 Periplasmic binding protein domain NRL03_06410 PF02308 MgtC family NRL03_06420 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL03_06430 PF01022 Bacterial regulatory protein, arsR family NRL03_06435 PF04143 Sulphur transport NRL03_06450 PF00873 AcrB/AcrD/AcrF family NRL03_06455 PF00563 EAL domain NRL03_06455 PF00990 Diguanylate cyclase, GGDEF domain NRL03_06455 PF03707 Bacterial signalling protein N terminal repeat NRL03_06460 PF03099 Biotin/lipoate A/B protein ligase family NRL03_06460 PF10437 Bacterial lipoate protein ligase C-terminus NRL03_06475 PF00873 AcrB/AcrD/AcrF family NRL03_06480 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRL03_06480 PF00529 HlyD membrane-fusion protein of T1SS NRL03_06490 PF03372 Endonuclease/Exonuclease/phosphatase family NRL03_06500 PF00072 Response regulator receiver domain NRL03_06505 PF00011 Hsp20/alpha crystallin family NRL03_06510 PF02424 ApbE family NRL03_06515 PF00127 Copper binding proteins, plastocyanin/azurin family NRL03_06530 PF01047 MarR family NRL03_06540 PF01156 Inosine-uridine preferring nucleoside hydrolase NRL03_06550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_06550 PF03466 LysR substrate binding domain NRL03_06555 PF02627 Carboxymuconolactone decarboxylase family NRL03_06560 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NRL03_06560 PF06481 COX Aromatic Rich Motif NRL03_06565 PF00115 Cytochrome C and Quinol oxidase polypeptide I NRL03_06570 PF00510 Cytochrome c oxidase subunit III NRL03_06575 PF03626 Prokaryotic Cytochrome C oxidase subunit IV NRL03_06580 PF01040 UbiA prenyltransferase family NRL03_06585 PF07690 Major Facilitator Superfamily NRL03_06590 PF07237 Protein of unknown function (DUF1428) NRL03_06595 PF02668 Taurine catabolism dioxygenase TauD, TfdA family NRL03_06600 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_06605 PF00005 ABC transporter NRL03_06610 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NRL03_06620 PF03466 LysR substrate binding domain NRL03_06620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_06685 PF13006 Insertion element 4 transposase N-terminal NRL03_06685 PF01609 Transposase DDE domain NRL03_06690 PF00290 Tryptophan synthase alpha chain NRL03_06695 PF00291 Pyridoxal-phosphate dependent enzyme NRL03_06700 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NRL03_06700 PF00218 Indole-3-glycerol phosphate synthase NRL03_06705 PF02885 Glycosyl transferase family, helical bundle domain NRL03_06705 PF00591 Glycosyl transferase family, a/b domain NRL03_06710 PF02885 Glycosyl transferase family, helical bundle domain NRL03_06710 PF00591 Glycosyl transferase family, a/b domain NRL03_06710 PF00117 Glutamine amidotransferase class-I NRL03_06720 PF00425 chorismate binding enzyme NRL03_06720 PF04715 Anthranilate synthase component I, N terminal region NRL03_06725 PF02811 PHP domain NRL03_06730 PF01300 Telomere recombination NRL03_06735 PF02616 Segregation and condensation protein ScpA NRL03_06740 PF04079 Segregation and condensation complex subunit ScpB NRL03_06745 PF01479 S4 domain NRL03_06745 PF00849 RNA pseudouridylate synthase NRL03_06770 PF08361 MAATS-type transcriptional repressor, C-terminal region NRL03_06770 PF00440 Bacterial regulatory proteins, tetR family NRL03_06775 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRL03_06775 PF00529 HlyD membrane-fusion protein of T1SS NRL03_06780 PF00873 AcrB/AcrD/AcrF family NRL03_06785 PF02321 Outer membrane efflux protein NRL03_06850 PF01609 Transposase DDE domain NRL03_06865 PF14659 Phage integrase, N-terminal SAM-like domain NRL03_06865 PF00589 Phage integrase family NRL03_06880 PF00440 Bacterial regulatory proteins, tetR family NRL03_06885 PF09317 Domain of unknown function (DUF1974) NRL03_06885 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRL03_06885 PF02770 Acyl-CoA dehydrogenase, middle domain NRL03_06885 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRL03_06890 PF00873 AcrB/AcrD/AcrF family NRL03_06900 PF02887 Pyruvate kinase, alpha/beta domain NRL03_06900 PF00224 Pyruvate kinase, barrel domain NRL03_06905 PF01380 SIS domain NRL03_06905 PF01418 Helix-turn-helix domain, rpiR family NRL03_06910 PF02685 Glucokinase NRL03_06920 PF01238 Phosphomannose isomerase type I NRL03_06925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_06930 PF00072 Response regulator receiver domain NRL03_06930 PF00486 Transcriptional regulatory protein, C terminal NRL03_06935 PF16363 GDP-mannose 4,6 dehydratase NRL03_06940 PF01609 Transposase DDE domain NRL03_06945 PF01943 Polysaccharide biosynthesis protein NRL03_06950 PF00535 Glycosyl transferase family 2 NRL03_06950 PF01501 Glycosyl transferase family 8 NRL03_06970 PF16363 GDP-mannose 4,6 dehydratase NRL03_06975 PF01370 NAD dependent epimerase/dehydratase family NRL03_06980 PF00293 NUDIX domain NRL03_06985 PF01050 Mannose-6-phosphate isomerase NRL03_06985 PF00483 Nucleotidyl transferase NRL03_06990 PF00535 Glycosyl transferase family 2 NRL03_06995 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NRL03_06995 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NRL03_06995 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NRL03_06995 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NRL03_07000 PF02397 Bacterial sugar transferase NRL03_07005 PF04321 RmlD substrate binding domain NRL03_07010 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase NRL03_07015 PF02706 Chain length determinant protein NRL03_07035 PF04337 Protein of unknown function, DUF480 NRL03_07040 PF00176 SNF2 family N-terminal domain NRL03_07040 PF00271 Helicase conserved C-terminal domain NRL03_07040 PF04434 SWIM zinc finger NRL03_07045 PF05472 DNA replication terminus site-binding protein (Ter protein) NRL03_07055 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family NRL03_07060 PF00676 Dehydrogenase E1 component NRL03_07065 PF02780 Transketolase, C-terminal domain NRL03_07065 PF02779 Transketolase, pyrimidine binding domain NRL03_07070 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NRL03_07070 PF00364 Biotin-requiring enzyme NRL03_07070 PF02817 e3 binding domain NRL03_07075 PF00313 'Cold-shock' DNA-binding domain NRL03_07095 PF01609 Transposase DDE domain NRL03_07120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRL03_07125 PF00892 EamA-like transporter family NRL03_07135 PF01966 HD domain NRL03_07140 PF01479 S4 domain NRL03_07140 PF00849 RNA pseudouridylate synthase NRL03_07150 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRL03_07155 PF12850 Calcineurin-like phosphoesterase superfamily domain NRL03_07170 PF13144 Chaperone for flagella basal body P-ring formation NRL03_07175 PF00072 Response regulator receiver domain NRL03_07175 PF01584 CheW-like domain NRL03_07180 PF03705 CheR methyltransferase, all-alpha domain NRL03_07180 PF01739 CheR methyltransferase, SAM binding domain NRL03_07185 PF00460 Flagella basal body rod protein NRL03_07190 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRL03_07190 PF00460 Flagella basal body rod protein NRL03_07200 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRL03_07200 PF00460 Flagella basal body rod protein NRL03_07200 PF07559 Flagellar basal body protein FlaE NRL03_07205 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_07205 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_07205 PF01610 Transposase NRL03_07210 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRL03_07210 PF00460 Flagella basal body rod protein NRL03_07215 PF00460 Flagella basal body rod protein NRL03_07215 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRL03_07220 PF02107 Flagellar L-ring protein NRL03_07225 PF02119 Flagellar P-ring protein NRL03_07230 PF10135 Rod binding protein NRL03_07230 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NRL03_07235 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRL03_07235 PF07196 Flagellin hook IN motif NRL03_07245 PF00571 CBS domain NRL03_07245 PF01769 Divalent cation transporter NRL03_07245 PF03448 MgtE intracellular N domain NRL03_07250 PF02541 Ppx/GppA phosphatase family NRL03_07255 PF17941 Polyphosphate kinase C-terminal domain 1 NRL03_07255 PF13090 Polyphosphate kinase C-terminal domain 2 NRL03_07255 PF02503 Polyphosphate kinase middle domain NRL03_07255 PF13089 Polyphosphate kinase N-terminal domain NRL03_07260 PF01842 ACT domain NRL03_07275 PF13188 PAS domain NRL03_07275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_07275 PF00512 His Kinase A (phospho-acceptor) domain NRL03_07280 PF02954 Bacterial regulatory protein, Fis family NRL03_07280 PF00072 Response regulator receiver domain NRL03_07280 PF00158 Sigma-54 interaction domain NRL03_07285 PF01784 NIF3 (NGG1p interacting factor 3) NRL03_07290 PF00551 Formyl transferase NRL03_07295 PF02769 AIR synthase related protein, C-terminal domain NRL03_07295 PF00586 AIR synthase related protein, N-terminal domain NRL03_07310 PF00308 Bacterial dnaA protein NRL03_07315 PF00463 Isocitrate lyase family NRL03_07320 PF01274 Malate synthase NRL03_07335 PF14437 MafB19-like deaminase NRL03_07340 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_07345 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_07350 PF00005 ABC transporter NRL03_07355 PF01895 PhoU domain NRL03_07360 PF01595 Cyclin M transmembrane N-terminal domain NRL03_07360 PF03471 Transporter associated domain NRL03_07360 PF00571 CBS domain NRL03_07370 PF02310 B12 binding domain NRL03_07370 PF02607 B12 binding domain NRL03_07370 PF02965 Vitamin B12 dependent methionine synthase, activation domain NRL03_07370 PF00809 Pterin binding enzyme NRL03_07370 PF02574 Homocysteine S-methyltransferase NRL03_07375 PF13520 Amino acid permease NRL03_07380 PF04116 Fatty acid hydroxylase superfamily NRL03_07385 PF00005 ABC transporter NRL03_07395 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_07400 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL03_07405 PF00990 Diguanylate cyclase, GGDEF domain NRL03_07405 PF08448 PAS fold NRL03_07410 PF14760 Rnk N-terminus NRL03_07410 PF01272 Transcription elongation factor, GreA/GreB, C-term NRL03_07425 PF00245 Alkaline phosphatase NRL03_07430 PF00245 Alkaline phosphatase NRL03_07435 PF01926 50S ribosome-binding GTPase NRL03_07440 PF07690 Major Facilitator Superfamily NRL03_07445 PF00850 Histone deacetylase domain NRL03_07455 PF06733 DEAD_2 NRL03_07455 PF13307 Helicase C-terminal domain NRL03_07460 PF13609 Gram-negative porin NRL03_07470 PF00155 Aminotransferase class I and II NRL03_07475 PF05872 Bacterial protein of unknown function (DUF853) NRL03_07490 PF03772 Competence protein NRL03_07490 PF00753 Metallo-beta-lactamase superfamily NRL03_07495 PF00664 ABC transporter transmembrane region NRL03_07495 PF00005 ABC transporter NRL03_07500 PF02606 Tetraacyldisaccharide-1-P 4'-kinase NRL03_07505 PF03966 Trm112p-like protein NRL03_07510 PF02348 Cytidylyltransferase NRL03_07515 PF00072 Response regulator receiver domain NRL03_07515 PF00196 Bacterial regulatory proteins, luxR family NRL03_07520 PF08459 UvrC Helix-hairpin-helix N-terminal NRL03_07520 PF01541 GIY-YIG catalytic domain NRL03_07520 PF02151 UvrB/uvrC motif NRL03_07525 PF01066 CDP-alcohol phosphatidyltransferase NRL03_07545 PF03466 LysR substrate binding domain NRL03_07545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_07550 PF01979 Amidohydrolase family NRL03_07560 PF00107 Zinc-binding dehydrogenase NRL03_07560 PF08240 Alcohol dehydrogenase GroES-like domain NRL03_07565 PF00440 Bacterial regulatory proteins, tetR family NRL03_07565 PF16925 Tetracyclin repressor-like, C-terminal domain NRL03_07570 PF04226 Transglycosylase associated protein NRL03_07575 PF00149 Calcineurin-like phosphoesterase NRL03_07585 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NRL03_07590 PF09190 DALR domain NRL03_07590 PF01406 tRNA synthetases class I (C) catalytic domain NRL03_07610 PF13808 DDE_Tnp_1-associated NRL03_07610 PF01609 Transposase DDE domain NRL03_07615 PF01609 Transposase DDE domain NRL03_07625 PF01609 Transposase DDE domain NRL03_07645 PF01609 Transposase DDE domain NRL03_07645 PF13808 DDE_Tnp_1-associated NRL03_07655 PF02463 RecF/RecN/SMC N terminal domain NRL03_07660 PF00990 Diguanylate cyclase, GGDEF domain NRL03_07660 PF13185 GAF domain NRL03_07695 PF01169 Uncharacterized protein family UPF0016 NRL03_07700 PF01253 Translation initiation factor SUI1 NRL03_07710 PF07670 Nucleoside recognition NRL03_07710 PF02421 Ferrous iron transport protein B NRL03_07710 PF17910 FeoB cytosolic helical domain NRL03_07710 PF07664 Ferrous iron transport protein B C terminus NRL03_07720 PF00437 Type II/IV secretion system protein NRL03_07735 PF01032 FecCD transport family NRL03_07740 PF00005 ABC transporter NRL03_07745 PF00793 DAHP synthetase I family NRL03_07750 PF01219 Prokaryotic diacylglycerol kinase NRL03_07755 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRL03_07755 PF01842 ACT domain NRL03_07755 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NRL03_07760 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NRL03_07765 PF01812 5-formyltetrahydrofolate cyclo-ligase family NRL03_07775 PF01113 Dihydrodipicolinate reductase, N-terminus NRL03_07775 PF05173 Dihydrodipicolinate reductase, C-terminus NRL03_07780 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NRL03_07780 PF00117 Glutamine amidotransferase class-I NRL03_07785 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NRL03_07785 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NRL03_07785 PF02142 MGS-like domain NRL03_07790 PF08502 LeuA allosteric (dimerisation) domain NRL03_07790 PF00682 HMGL-like NRL03_07795 PF00990 Diguanylate cyclase, GGDEF domain NRL03_07800 PF07759 Protein of unknown function (DUF1615) NRL03_07830 PF00270 DEAD/DEAH box helicase NRL03_07830 PF00271 Helicase conserved C-terminal domain NRL03_07840 PF14521 Lysine-specific metallo-endopeptidase NRL03_07865 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL03_07870 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_07875 PF00005 ABC transporter NRL03_07880 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NRL03_07880 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL03_07885 PF00310 Glutamine amidotransferases class-II NRL03_07885 PF04898 Glutamate synthase central domain NRL03_07885 PF01645 Conserved region in glutamate synthase NRL03_07885 PF01493 GXGXG motif NRL03_07890 PF16199 Radical_SAM C-terminal domain NRL03_07890 PF04055 Radical SAM superfamily NRL03_07895 PF00005 ABC transporter NRL03_07895 PF00664 ABC transporter transmembrane region NRL03_07895 PF03412 Peptidase C39 family NRL03_07925 PF00665 Integrase core domain NRL03_07930 PF01695 IstB-like ATP binding protein NRL03_07950 PF00324 Amino acid permease NRL03_07960 PF03618 Kinase/pyrophosphorylase NRL03_07965 PF02896 PEP-utilising enzyme, TIM barrel domain NRL03_07965 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NRL03_07965 PF00391 PEP-utilising enzyme, mobile domain NRL03_07970 PF00005 ABC transporter NRL03_07995 PF03180 NLPA lipoprotein NRL03_08005 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NRL03_08005 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRL03_08005 PF11890 Domain of unknown function (DUF3410) NRL03_08010 PF02774 Semialdehyde dehydrogenase, dimerisation domain NRL03_08010 PF01118 Semialdehyde dehydrogenase, NAD binding domain NRL03_08020 PF01416 tRNA pseudouridine synthase NRL03_08025 PF17848 Acetyl-coA carboxylase zinc finger domain NRL03_08025 PF01039 Carboxyl transferase domain NRL03_08030 PF08245 Mur ligase middle domain NRL03_08030 PF02875 Mur ligase family, glutamate ligase domain NRL03_08035 PF05036 Sporulation related domain NRL03_08040 PF04358 DsrC like protein NRL03_08045 PF12805 FUSC-like inner membrane protein yccS NRL03_08050 PF01027 Inhibitor of apoptosis-promoting Bax1 NRL03_08060 PF07715 TonB-dependent Receptor Plug Domain NRL03_08060 PF07660 Secretin and TonB N terminus short domain NRL03_08060 PF00593 TonB dependent receptor NRL03_08070 PF04303 PrpF protein NRL03_08075 PF00330 Aconitase family (aconitate hydratase) NRL03_08075 PF00694 Aconitase C-terminal domain NRL03_08080 PF00285 Citrate synthase, C-terminal domain NRL03_08090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL03_08090 PF08447 PAS fold NRL03_08095 PF00563 EAL domain NRL03_08095 PF00990 Diguanylate cyclase, GGDEF domain NRL03_08095 PF13426 PAS domain NRL03_08100 PF00849 RNA pseudouridylate synthase NRL03_08110 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRL03_08115 PF04209 homogentisate 1,2-dioxygenase NRL03_08125 PF02798 Glutathione S-transferase, N-terminal domain NRL03_08125 PF14497 Glutathione S-transferase, C-terminal domain NRL03_08140 PF13537 Glutamine amidotransferase domain NRL03_08140 PF00733 Asparagine synthase NRL03_08155 PF13344 Haloacid dehalogenase-like hydrolase NRL03_08160 PF00962 Adenosine/AMP deaminase NRL03_08165 PF08240 Alcohol dehydrogenase GroES-like domain NRL03_08165 PF00107 Zinc-binding dehydrogenase NRL03_08170 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NRL03_08175 PF03471 Transporter associated domain NRL03_08175 PF03741 Integral membrane protein TerC family NRL03_08190 PF02913 FAD linked oxidases, C-terminal domain NRL03_08190 PF01565 FAD binding domain NRL03_08190 PF13183 4Fe-4S dicluster domain NRL03_08200 PF03061 Thioesterase superfamily NRL03_08205 PF03880 DbpA RNA binding domain NRL03_08205 PF00270 DEAD/DEAH box helicase NRL03_08205 PF00271 Helicase conserved C-terminal domain NRL03_08215 PF00563 EAL domain NRL03_08215 PF00990 Diguanylate cyclase, GGDEF domain NRL03_08215 PF08447 PAS fold NRL03_08215 PF08448 PAS fold NRL03_08220 PF03466 LysR substrate binding domain NRL03_08220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_08225 PF07690 Major Facilitator Superfamily NRL03_08230 PF13726 Na+-H+ antiporter family NRL03_08230 PF03553 Na+/H+ antiporter family NRL03_08235 PF00929 Exonuclease NRL03_08240 PF00672 HAMP domain NRL03_08240 PF12729 Four helix bundle sensory module for signal transduction NRL03_08240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL03_08245 PF18393 MotY N-terminal domain NRL03_08245 PF00691 OmpA family NRL03_08250 PF00459 Inositol monophosphatase family NRL03_08260 PF00043 Glutathione S-transferase, C-terminal domain NRL03_08260 PF02798 Glutathione S-transferase, N-terminal domain NRL03_08265 PF00043 Glutathione S-transferase, C-terminal domain NRL03_08265 PF02798 Glutathione S-transferase, N-terminal domain NRL03_08275 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_08280 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_08280 PF12911 N-terminal TM domain of oligopeptide transport permease C NRL03_08285 PF00005 ABC transporter NRL03_08285 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRL03_08290 PF07690 Major Facilitator Superfamily NRL03_08300 PF05164 Cell division protein ZapA NRL03_08305 PF03695 Uncharacterised protein family (UPF0149) NRL03_08310 PF01494 FAD binding domain NRL03_08315 PF01494 FAD binding domain NRL03_08320 PF08669 Glycine cleavage T-protein C-terminal barrel domain NRL03_08320 PF01571 Aminomethyltransferase folate-binding domain NRL03_08325 PF01597 Glycine cleavage H-protein NRL03_08330 PF02347 Glycine cleavage system P-protein NRL03_08340 PF00975 Thioesterase domain NRL03_08340 PF00550 Phosphopantetheine attachment site NRL03_08340 PF00391 PEP-utilising enzyme, mobile domain NRL03_08340 PF00668 Condensation domain NRL03_08340 PF08241 Methyltransferase domain NRL03_08340 PF00501 AMP-binding enzyme NRL03_08340 PF13193 AMP-binding enzyme C-terminal domain NRL03_08350 PF07690 Major Facilitator Superfamily NRL03_08355 PF13192 Thioredoxin domain NRL03_08355 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL03_08360 PF00578 AhpC/TSA family NRL03_08360 PF10417 C-terminal domain of 1-Cys peroxiredoxin NRL03_08365 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_08365 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_08365 PF01610 Transposase NRL03_08370 PF00571 CBS domain NRL03_08375 PF02547 Queuosine biosynthesis protein NRL03_08380 PF01702 Queuine tRNA-ribosyltransferase NRL03_08385 PF02699 Preprotein translocase subunit NRL03_08390 PF13721 SecD export protein N-terminal TM region NRL03_08390 PF07549 SecD/SecF GG Motif NRL03_08390 PF02355 Protein export membrane protein NRL03_08395 PF02355 Protein export membrane protein NRL03_08395 PF07549 SecD/SecF GG Motif NRL03_08400 PF00581 Rhodanese-like domain NRL03_08405 PF13181 Tetratricopeptide repeat NRL03_08405 PF07719 Tetratricopeptide repeat NRL03_08410 PF01136 Peptidase family U32 NRL03_08415 PF01136 Peptidase family U32 NRL03_08420 PF02036 SCP-2 sterol transfer family NRL03_08425 PF00588 SpoU rRNA Methylase family NRL03_08430 PF02082 Transcriptional regulator NRL03_08435 PF00266 Aminotransferase class-V NRL03_08440 PF01592 NifU-like N terminal domain NRL03_08445 PF01521 Iron-sulphur cluster biosynthesis NRL03_08450 PF00226 DnaJ domain NRL03_08450 PF07743 HSCB C-terminal oligomerisation domain NRL03_08455 PF00012 Hsp70 protein NRL03_08460 PF00111 2Fe-2S iron-sulfur cluster binding domain NRL03_08465 PF12404 Peptidase NRL03_08465 PF00883 Cytosol aminopeptidase family, catalytic domain NRL03_08470 PF00883 Cytosol aminopeptidase family, catalytic domain NRL03_08470 PF12404 Peptidase NRL03_08475 PF00334 Nucleoside diphosphate kinase NRL03_08480 PF04055 Radical SAM superfamily NRL03_08490 PF13464 Domain of unknown function (DUF4115) NRL03_08495 PF04551 GcpE protein NRL03_08500 PF13393 Histidyl-tRNA synthetase NRL03_08500 PF03129 Anticodon binding domain NRL03_08505 PF09976 Tetratricopeptide repeat-like domain NRL03_08510 PF13360 PQQ-like domain NRL03_08515 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NRL03_08515 PF01926 50S ribosome-binding GTPase NRL03_08525 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_08525 PF01610 Transposase NRL03_08525 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_08545 PF01464 Transglycosylase SLT domain NRL03_08545 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL03_08550 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal NRL03_08550 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NRL03_08550 PF02769 AIR synthase related protein, C-terminal domain NRL03_08555 PF00361 Proton-conducting membrane transporter NRL03_08560 PF00361 Proton-conducting membrane transporter NRL03_08565 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NRL03_08565 PF00361 Proton-conducting membrane transporter NRL03_08570 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NRL03_08575 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 NRL03_08580 PF12838 4Fe-4S dicluster domain NRL03_08585 PF00146 NADH dehydrogenase NRL03_08590 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NRL03_08590 PF00384 Molybdopterin oxidoreductase NRL03_08590 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NRL03_08595 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NRL03_08595 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NRL03_08605 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NRL03_08605 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NRL03_08610 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NRL03_08615 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 NRL03_08620 PF00691 OmpA family NRL03_08620 PF13677 Membrane MotB of proton-channel complex MotA/MotB NRL03_08625 PF01618 MotA/TolQ/ExbB proton channel family NRL03_08645 PF04536 TPM domain NRL03_08655 PF03411 Penicillin-insensitive murein endopeptidase NRL03_08665 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) NRL03_08670 PF00248 Aldo/keto reductase family NRL03_08685 PF01212 Beta-eliminating lyase NRL03_08695 PF00486 Transcriptional regulatory protein, C terminal NRL03_08695 PF00072 Response regulator receiver domain NRL03_08700 PF03466 LysR substrate binding domain NRL03_08700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_08715 PF03806 AbgT putative transporter family NRL03_08720 PF00881 Nitroreductase family NRL03_08735 PF07690 Major Facilitator Superfamily NRL03_08740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_08740 PF03466 LysR substrate binding domain NRL03_08745 PF00925 GTP cyclohydrolase II NRL03_08750 PF02224 Cytidylate kinase NRL03_08755 PF00575 S1 RNA binding domain NRL03_08760 PF00216 Bacterial DNA-binding protein NRL03_08770 PF18073 Rubredoxin metal binding domain NRL03_08775 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NRL03_08790 PF06508 Queuosine biosynthesis protein QueC NRL03_08795 PF04055 Radical SAM superfamily NRL03_08800 PF12843 Putative quorum-sensing-regulated virulence factor NRL03_08805 PF01923 Cobalamin adenosyltransferase NRL03_08810 PF00816 H-NS histone family NRL03_08815 PF03553 Na+/H+ antiporter family NRL03_08820 PF00265 Thymidine kinase NRL03_08830 PF10722 Putative bacterial sensory transduction regulator NRL03_08850 PF01380 SIS domain NRL03_08850 PF01418 Helix-turn-helix domain, rpiR family NRL03_08855 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NRL03_08855 PF00367 phosphotransferase system, EIIB NRL03_08855 PF02378 Phosphotransferase system, EIIC NRL03_08860 PF00232 Glycosyl hydrolase family 1 NRL03_08875 PF00141 Peroxidase NRL03_08885 PF13808 DDE_Tnp_1-associated NRL03_08885 PF01609 Transposase DDE domain NRL03_08890 PF13657 HipA N-terminal domain NRL03_08890 PF07804 HipA-like C-terminal domain NRL03_08975 PF00990 Diguanylate cyclase, GGDEF domain NRL03_08975 PF00563 EAL domain NRL03_08975 PF03707 Bacterial signalling protein N terminal repeat NRL03_08985 PF01627 Hpt domain NRL03_08985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_08985 PF00512 His Kinase A (phospho-acceptor) domain NRL03_08985 PF00672 HAMP domain NRL03_08985 PF00072 Response regulator receiver domain NRL03_08985 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NRL03_08990 PF00990 Diguanylate cyclase, GGDEF domain NRL03_08990 PF03707 Bacterial signalling protein N terminal repeat NRL03_08990 PF00563 EAL domain NRL03_09025 PF00486 Transcriptional regulatory protein, C terminal NRL03_09025 PF00072 Response regulator receiver domain NRL03_09030 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL03_09030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_09030 PF00512 His Kinase A (phospho-acceptor) domain NRL03_09030 PF00072 Response regulator receiver domain NRL03_09040 PF13188 PAS domain NRL03_09040 PF02954 Bacterial regulatory protein, Fis family NRL03_09040 PF00158 Sigma-54 interaction domain NRL03_09045 PF02653 Branched-chain amino acid transport system / permease component NRL03_09055 PF00005 ABC transporter NRL03_09055 PF12399 Branched-chain amino acid ATP-binding cassette transporter NRL03_09060 PF00005 ABC transporter NRL03_09065 PF01774 UreD urease accessory protein NRL03_09070 PF00547 Urease, gamma subunit NRL03_09075 PF00699 Urease beta subunit NRL03_09080 PF00449 Urease alpha-subunit, N-terminal domain NRL03_09080 PF01979 Amidohydrolase family NRL03_09085 PF02814 UreE urease accessory protein, N-terminal domain NRL03_09085 PF05194 UreE urease accessory protein, C-terminal domain NRL03_09095 PF01730 UreF NRL03_09100 PF02492 CobW/HypB/UreG, nucleotide-binding domain NRL03_09145 PF02646 RmuC family NRL03_09155 PF05598 Transposase domain (DUF772) NRL03_09155 PF01609 Transposase DDE domain NRL03_09165 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain NRL03_09165 PF14490 Helix-hairpin-helix containing domain NRL03_09165 PF13538 UvrD-like helicase C-terminal domain NRL03_09205 PF01548 Transposase NRL03_09205 PF02371 Transposase IS116/IS110/IS902 family NRL03_09245 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NRL03_09245 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NRL03_09250 PF01053 Cys/Met metabolism PLP-dependent enzyme NRL03_09260 PF13460 NAD(P)H-binding NRL03_09265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_09265 PF03466 LysR substrate binding domain NRL03_09270 PF12833 Helix-turn-helix domain NRL03_09270 PF02311 AraC-like ligand binding domain NRL03_09275 PF00563 EAL domain NRL03_09275 PF12792 CSS motif domain associated with EAL NRL03_09280 PF00990 Diguanylate cyclase, GGDEF domain NRL03_09285 PF07715 TonB-dependent Receptor Plug Domain NRL03_09285 PF00593 TonB dependent receptor NRL03_09295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_09295 PF03466 LysR substrate binding domain NRL03_09300 PF08267 Cobalamin-independent synthase, N-terminal domain NRL03_09300 PF01717 Cobalamin-independent synthase, Catalytic domain NRL03_09310 PF00571 CBS domain NRL03_09310 PF01743 Poly A polymerase head domain NRL03_09315 PF07969 Amidohydrolase family NRL03_09325 PF01266 FAD dependent oxidoreductase NRL03_09330 PF04244 Deoxyribodipyrimidine photo-lyase-related protein NRL03_09340 PF00768 D-alanyl-D-alanine carboxypeptidase NRL03_09345 PF03918 Cytochrome C biogenesis protein NRL03_09350 PF08534 Redoxin NRL03_09355 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal NRL03_09355 PF01578 Cytochrome C assembly protein NRL03_09360 PF03916 Polysulphide reductase, NrfD NRL03_09365 PF00037 4Fe-4S binding domain NRL03_09365 PF13247 4Fe-4S dicluster domain NRL03_09370 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) NRL03_09370 PF13435 Cytochrome c554 and c-prime NRL03_09375 PF02335 Cytochrome c552 NRL03_09385 PF02754 Cysteine-rich domain NRL03_09385 PF13183 4Fe-4S dicluster domain NRL03_09395 PF00890 FAD binding domain NRL03_09400 PF01266 FAD dependent oxidoreductase NRL03_09400 PF04324 BFD-like [2Fe-2S] binding domain NRL03_09405 PF02810 SEC-C motif NRL03_09410 PF17200 Single Cache domain 2 NRL03_09410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL03_09410 PF00672 HAMP domain NRL03_09415 PF01047 MarR family NRL03_09415 PF00480 ROK family NRL03_09420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_09420 PF00989 PAS fold NRL03_09420 PF17203 Single cache domain 3 NRL03_09420 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain NRL03_09425 PF00072 Response regulator receiver domain NRL03_09430 PF01970 Tripartite tricarboxylate transporter TctA family NRL03_09440 PF03401 Tripartite tricarboxylate transporter family receptor NRL03_09445 PF01464 Transglycosylase SLT domain NRL03_09445 PF01551 Peptidase family M23 NRL03_09445 PF10145 Phage-related minor tail protein NRL03_09450 PF02080 TrkA-C domain NRL03_09450 PF06826 Predicted Permease Membrane Region NRL03_09460 PF12344 Ultra-violet resistance protein B NRL03_09460 PF02151 UvrB/uvrC motif NRL03_09460 PF04851 Type III restriction enzyme, res subunit NRL03_09460 PF00271 Helicase conserved C-terminal domain NRL03_09460 PF17757 UvrB interaction domain NRL03_09470 PF09335 SNARE associated Golgi protein NRL03_09475 PF02600 Disulfide bond formation protein DsbB NRL03_09480 PF06450 Bacterial Na+/H+ antiporter B (NhaB) NRL03_09485 PF07840 FadR C-terminal domain NRL03_09485 PF00392 Bacterial regulatory proteins, gntR family NRL03_09490 PF04293 SpoVR like protein NRL03_09495 PF04285 Protein of unknown function (DUF444) NRL03_09500 PF08298 PrkA AAA domain NRL03_09500 PF06798 PrkA serine protein kinase C-terminal domain NRL03_09510 PF00270 DEAD/DEAH box helicase NRL03_09510 PF00271 Helicase conserved C-terminal domain NRL03_09510 PF00570 HRDC domain NRL03_09510 PF16124 RecQ zinc-binding NRL03_09510 PF09382 RQC domain NRL03_09515 PF00375 Sodium:dicarboxylate symporter family NRL03_09520 PF03222 Tryptophan/tyrosine permease family NRL03_09525 PF00293 NUDIX domain NRL03_09530 PF00425 chorismate binding enzyme NRL03_09530 PF04715 Anthranilate synthase component I, N terminal region NRL03_09550 PF00343 Carbohydrate phosphorylase NRL03_09560 PF00939 Sodium:sulfate symporter transmembrane region NRL03_09565 PF00085 Thioredoxin NRL03_09570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_09570 PF00512 His Kinase A (phospho-acceptor) domain NRL03_09570 PF00672 HAMP domain NRL03_09570 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NRL03_09570 PF00072 Response regulator receiver domain NRL03_09570 PF01627 Hpt domain NRL03_09575 PF00664 ABC transporter transmembrane region NRL03_09575 PF00005 ABC transporter NRL03_09580 PF00664 ABC transporter transmembrane region NRL03_09580 PF00005 ABC transporter NRL03_09615 PF01575 MaoC like domain NRL03_09640 PF08543 Phosphomethylpyrimidine kinase NRL03_09645 PF03992 Antibiotic biosynthesis monooxygenase NRL03_09650 PF13673 Acetyltransferase (GNAT) domain NRL03_09660 PF01928 CYTH domain NRL03_09675 PF00583 Acetyltransferase (GNAT) family NRL03_09680 PF00271 Helicase conserved C-terminal domain NRL03_09680 PF00270 DEAD/DEAH box helicase NRL03_09685 PF00255 Glutathione peroxidase NRL03_09695 PF07478 D-ala D-ala ligase C-terminus NRL03_09695 PF01820 D-ala D-ala ligase N-terminus NRL03_09700 PF03942 DTW domain NRL03_09710 PF01925 Sulfite exporter TauE/SafE NRL03_09715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_09715 PF03466 LysR substrate binding domain NRL03_09735 PF11398 Protein of unknown function (DUF2813) NRL03_09755 PF00883 Cytosol aminopeptidase family, catalytic domain NRL03_09755 PF02789 Cytosol aminopeptidase family, N-terminal domain NRL03_09760 PF13419 Haloacid dehalogenase-like hydrolase NRL03_09765 PF01546 Peptidase family M20/M25/M40 NRL03_09765 PF07687 Peptidase dimerisation domain NRL03_09775 PF00365 Phosphofructokinase NRL03_09780 PF00121 Triosephosphate isomerase NRL03_09785 PF02698 DUF218 domain NRL03_09790 PF13847 Methyltransferase domain NRL03_09795 PF17193 MukF C-terminal domain NRL03_09795 PF17192 MukF middle domain NRL03_09795 PF03882 MukF winged-helix domain NRL03_09800 PF04288 MukE-like family NRL03_09805 PF16330 MukB hinge domain NRL03_09805 PF04310 MukB N-terminal NRL03_09820 PF05036 Sporulation related domain NRL03_09820 PF03330 Lytic transglycolase NRL03_09860 PF01810 LysE type translocator NRL03_09875 PF08274 PhnA Zinc-Ribbon NRL03_09875 PF03831 PhnA domain NRL03_09920 PF01713 Smr domain NRL03_09925 PF05175 Methyltransferase small domain NRL03_09930 PF01264 Chorismate synthase NRL03_09940 PF00271 Helicase conserved C-terminal domain NRL03_09940 PF00270 DEAD/DEAH box helicase NRL03_09955 PF03222 Tryptophan/tyrosine permease family NRL03_09960 PF00356 Bacterial regulatory proteins, lacI family NRL03_09960 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NRL03_09965 PF00381 PTS HPr component phosphorylation site NRL03_09965 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRL03_09970 PF00294 pfkB family carbohydrate kinase NRL03_09975 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NRL03_09975 PF02378 Phosphotransferase system, EIIC NRL03_09980 PF06945 Protein of unknown function (DUF1289) NRL03_09985 PF03562 MltA specific insert domain NRL03_09985 PF06725 3D domain NRL03_09995 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_09995 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_09995 PF01610 Transposase NRL03_10005 PF00111 2Fe-2S iron-sulfur cluster binding domain NRL03_10010 PF00268 Ribonucleotide reductase, small chain NRL03_10015 PF03477 ATP cone domain NRL03_10015 PF02867 Ribonucleotide reductase, barrel domain NRL03_10015 PF00317 Ribonucleotide reductase, all-alpha domain NRL03_10020 PF13419 Haloacid dehalogenase-like hydrolase NRL03_10030 PF03989 DNA gyrase C-terminal domain, beta-propeller NRL03_10030 PF00521 DNA gyrase/topoisomerase IV, subunit A NRL03_10050 PF07282 Putative transposase DNA-binding domain NRL03_10050 PF12323 Helix-turn-helix domain NRL03_10050 PF01385 Probable transposase NRL03_10090 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NRL03_10090 PF02824 TGS domain NRL03_10090 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NRL03_10090 PF03129 Anticodon binding domain NRL03_10095 PF00707 Translation initiation factor IF-3, C-terminal domain NRL03_10095 PF05198 Translation initiation factor IF-3, N-terminal domain NRL03_10100 PF01632 Ribosomal protein L35 NRL03_10105 PF00453 Ribosomal protein L20 NRL03_10110 PF01409 tRNA synthetases class II core domain (F) NRL03_10110 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NRL03_10115 PF03483 B3/4 domain NRL03_10115 PF03147 Ferredoxin-fold anticodon binding domain NRL03_10115 PF01588 Putative tRNA binding domain NRL03_10115 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NRL03_10115 PF03484 tRNA synthetase B5 domain NRL03_10120 PF00216 Bacterial DNA-binding protein NRL03_10125 PF00072 Response regulator receiver domain NRL03_10125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_10125 PF09456 RcsC Alpha-Beta-Loop (ABL) NRL03_10125 PF00512 His Kinase A (phospho-acceptor) domain NRL03_10140 PF02146 Sir2 family NRL03_10150 PF00563 EAL domain NRL03_10150 PF00990 Diguanylate cyclase, GGDEF domain NRL03_10150 PF03707 Bacterial signalling protein N terminal repeat NRL03_10160 PF00356 Bacterial regulatory proteins, lacI family NRL03_10165 PF00294 pfkB family carbohydrate kinase NRL03_10170 PF13407 Periplasmic binding protein domain NRL03_10175 PF02653 Branched-chain amino acid transport system / permease component NRL03_10180 PF00005 ABC transporter NRL03_10185 PF05025 RbsD / FucU transport protein family NRL03_10190 PF00043 Glutathione S-transferase, C-terminal domain NRL03_10190 PF02798 Glutathione S-transferase, N-terminal domain NRL03_10205 PF01171 PP-loop family NRL03_10210 PF00582 Universal stress protein family NRL03_10215 PF00027 Cyclic nucleotide-binding domain NRL03_10215 PF13545 Crp-like helix-turn-helix domain NRL03_10230 PF00403 Heavy-metal-associated domain NRL03_10240 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NRL03_10240 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP NRL03_10255 PF00115 Cytochrome C and Quinol oxidase polypeptide I NRL03_10265 PF13185 GAF domain NRL03_10270 PF04352 ProQ/FINO family NRL03_10270 PF17516 ProQ C-terminal domain NRL03_10275 PF11818 C-terminal domain of tail specific protease (DUF3340) NRL03_10275 PF00595 PDZ domain NRL03_10275 PF03572 Peptidase family S41 NRL03_10275 PF17804 Tail specific protease N-terminal domain NRL03_10280 PF11940 Domain of unknown function (DUF3458) Ig-like fold NRL03_10280 PF17432 Domain of unknown function (DUF3458_C) ARM repeats NRL03_10280 PF01433 Peptidase family M1 domain NRL03_10290 PF05088 Bacterial NAD-glutamate dehydrogenase NRL03_10295 PF01180 Dihydroorotate dehydrogenase NRL03_10300 PF07126 Cell-division protein ZapC NRL03_10305 PF01170 Putative RNA methylase family UPF0020 NRL03_10305 PF10672 S-adenosylmethionine-dependent methyltransferase NRL03_10305 PF02926 THUMP domain NRL03_10315 PF00005 ABC transporter NRL03_10315 PF16326 ABC transporter C-terminal domain NRL03_10315 PF12848 ABC transporter NRL03_10325 PF04957 Ribosome modulation factor NRL03_10330 PF07977 FabA-like domain NRL03_10335 PF05362 Lon protease (S16) C-terminal proteolytic domain NRL03_10335 PF13654 AAA domain NRL03_10455 PF13808 DDE_Tnp_1-associated NRL03_10455 PF01609 Transposase DDE domain NRL03_10480 PF01695 IstB-like ATP binding protein NRL03_10485 PF00665 Integrase core domain NRL03_10555 PF05840 Bacteriophage replication gene A protein (GPA) NRL03_10595 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_10595 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_10595 PF01610 Transposase NRL03_10610 PF07130 YebG protein NRL03_10620 PF04403 Paraquat-inducible protein A NRL03_10625 PF02470 MlaD protein NRL03_10630 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF NRL03_10630 PF01189 16S rRNA methyltransferase RsmB/F NRL03_10630 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF NRL03_10640 PF00589 Phage integrase family NRL03_10645 PF01026 TatD related DNase NRL03_10650 PF09115 DNA polymerase III, delta subunit, C terminal NRL03_10655 PF02223 Thymidylate kinase NRL03_10660 PF02618 YceG-like family NRL03_10665 PF01063 Amino-transferase class IV NRL03_10670 PF02801 Beta-ketoacyl synthase, C-terminal domain NRL03_10670 PF00109 Beta-ketoacyl synthase, N-terminal domain NRL03_10675 PF00550 Phosphopantetheine attachment site NRL03_10685 PF00698 Acyl transferase domain NRL03_10690 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NRL03_10690 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NRL03_10695 PF02504 Fatty acid synthesis protein NRL03_10700 PF01783 Ribosomal L32p protein family NRL03_10705 PF02620 Large ribosomal RNA subunit accumulation protein YceD NRL03_10715 PF02545 Maf-like protein NRL03_10720 PF00849 RNA pseudouridylate synthase NRL03_10720 PF01479 S4 domain NRL03_10725 PF00575 S1 RNA binding domain NRL03_10725 PF10150 Ribonuclease E/G family NRL03_10725 PF12111 Polyribonucleotide phosphorylase C terminal NRL03_10730 PF01384 Phosphate transporter family NRL03_10735 PF00692 dUTPase NRL03_10740 PF00485 Phosphoribulokinase / Uridine kinase family NRL03_10745 PF10609 NUBPL iron-transfer P-loop NTPase NRL03_10750 PF09334 tRNA synthetases class I (M) NRL03_10750 PF08264 Anticodon-binding domain of tRNA NRL03_10750 PF01588 Putative tRNA binding domain NRL03_10760 PF00708 Acylphosphatase NRL03_10765 PF00672 HAMP domain NRL03_10765 PF12729 Four helix bundle sensory module for signal transduction NRL03_10765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL03_10770 PF10672 S-adenosylmethionine-dependent methyltransferase NRL03_10770 PF17785 PUA-like domain NRL03_10775 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_10775 PF01610 Transposase NRL03_10775 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_10790 PF02769 AIR synthase related protein, C-terminal domain NRL03_10790 PF00586 AIR synthase related protein, N-terminal domain NRL03_10800 PF00753 Metallo-beta-lactamase superfamily NRL03_10805 PF00072 Response regulator receiver domain NRL03_10810 PF00072 Response regulator receiver domain NRL03_10820 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NRL03_10820 PF01627 Hpt domain NRL03_10820 PF00512 His Kinase A (phospho-acceptor) domain NRL03_10820 PF00672 HAMP domain NRL03_10820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_10820 PF00072 Response regulator receiver domain NRL03_10825 PF01386 Ribosomal L25p family NRL03_10835 PF00270 DEAD/DEAH box helicase NRL03_10835 PF11898 Domain of unknown function (DUF3418) NRL03_10835 PF04408 Helicase associated domain (HA2) NRL03_10835 PF00271 Helicase conserved C-terminal domain NRL03_10835 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold NRL03_10840 PF00571 CBS domain NRL03_10840 PF02272 DHHA1 domain NRL03_10840 PF01368 DHH family NRL03_10840 PF01743 Poly A polymerase head domain NRL03_10845 PF00072 Response regulator receiver domain NRL03_10845 PF00196 Bacterial regulatory proteins, luxR family NRL03_10855 PF13610 DDE domain NRL03_10865 PF00809 Pterin binding enzyme NRL03_10870 PF00893 Small Multidrug Resistance protein NRL03_10885 PF01610 Transposase NRL03_10885 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_10885 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_10895 PF01609 Transposase DDE domain NRL03_10905 PF00589 Phage integrase family NRL03_10905 PF13495 Phage integrase, N-terminal SAM-like domain NRL03_10910 PF07670 Nucleoside recognition NRL03_10915 PF02678 Pirin NRL03_10915 PF05726 Pirin C-terminal cupin domain NRL03_10920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_10920 PF03466 LysR substrate binding domain NRL03_10925 PF02575 YbaB/EbfC DNA-binding family NRL03_10930 PF12170 DNA polymerase III tau subunit V interacting with alpha NRL03_10930 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding NRL03_10930 PF12169 DNA polymerase III subunits gamma and tau domain III NRL03_10935 PF00156 Phosphoribosyl transferase domain NRL03_10940 PF04304 Protein of unknown function (DUF454) NRL03_10945 PF01207 Dihydrouridine synthase (Dus) NRL03_10955 PF00892 EamA-like transporter family NRL03_10965 PF01612 3'-5' exonuclease NRL03_10965 PF00570 HRDC domain NRL03_10970 PF00501 AMP-binding enzyme NRL03_10970 PF13193 AMP-binding enzyme C-terminal domain NRL03_10975 PF00561 alpha/beta hydrolase fold NRL03_10985 PF00814 Glycoprotease family NRL03_10990 PF04851 Type III restriction enzyme, res subunit NRL03_10990 PF13307 Helicase C-terminal domain NRL03_11000 PF08029 HisG, C-terminal domain NRL03_11000 PF01634 ATP phosphoribosyltransferase NRL03_11005 PF00815 Histidinol dehydrogenase NRL03_11010 PF00155 Aminotransferase class I and II NRL03_11015 PF08645 Polynucleotide kinase 3 phosphatase NRL03_11015 PF00475 Imidazoleglycerol-phosphate dehydratase NRL03_11020 PF00117 Glutamine amidotransferase class-I NRL03_11025 PF00977 Histidine biosynthesis protein NRL03_11030 PF00072 Response regulator receiver domain NRL03_11035 PF00990 Diguanylate cyclase, GGDEF domain NRL03_11035 PF08448 PAS fold NRL03_11040 PF00072 Response regulator receiver domain NRL03_11040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_11040 PF00512 His Kinase A (phospho-acceptor) domain NRL03_11040 PF01627 Hpt domain NRL03_11045 PF00977 Histidine biosynthesis protein NRL03_11050 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase NRL03_11050 PF01502 Phosphoribosyl-AMP cyclohydrolase NRL03_11060 PF01609 Transposase DDE domain NRL03_11060 PF13808 DDE_Tnp_1-associated NRL03_11070 PF01609 Transposase DDE domain NRL03_11075 PF13737 Transposase DDE domain NRL03_11080 PF01609 Transposase DDE domain NRL03_11090 PF13193 AMP-binding enzyme C-terminal domain NRL03_11090 PF00501 AMP-binding enzyme NRL03_11095 PF05433 Glycine zipper 2TM domain NRL03_11110 PF01032 FecCD transport family NRL03_11115 PF00005 ABC transporter NRL03_11120 PF07690 Major Facilitator Superfamily NRL03_11130 PF07152 YaeQ protein NRL03_11140 PF00378 Enoyl-CoA hydratase/isomerase NRL03_11140 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NRL03_11140 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NRL03_11145 PF00108 Thiolase, N-terminal domain NRL03_11145 PF02803 Thiolase, C-terminal domain NRL03_11150 PF17863 AAA lid domain NRL03_11150 PF07726 ATPase family associated with various cellular activities (AAA) NRL03_11155 PF01882 Protein of unknown function DUF58 NRL03_11180 PF08281 Sigma-70, region 4 NRL03_11180 PF04542 Sigma-70 region 2 NRL03_11190 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) NRL03_11195 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) NRL03_11200 PF00563 EAL domain NRL03_11200 PF08668 HDOD domain NRL03_11205 PF00108 Thiolase, N-terminal domain NRL03_11205 PF02803 Thiolase, C-terminal domain NRL03_11210 PF00376 MerR family regulatory protein NRL03_11210 PF09278 MerR, DNA binding NRL03_11215 PF00375 Sodium:dicarboxylate symporter family NRL03_11220 PF06865 Pyrimidine/purine nucleoside phosphorylase NRL03_11225 PF03313 Serine dehydratase alpha chain NRL03_11225 PF03315 Serine dehydratase beta chain NRL03_11230 PF03313 Serine dehydratase alpha chain NRL03_11230 PF03315 Serine dehydratase beta chain NRL03_11235 PF13406 Transglycosylase SLT domain NRL03_11240 PF05166 YcgL domain NRL03_11245 PF03775 Septum formation inhibitor MinC, C-terminal domain NRL03_11245 PF05209 Septum formation inhibitor MinC, N-terminal domain NRL03_11250 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NRL03_11255 PF03776 Septum formation topological specificity factor MinE NRL03_11260 PF04269 Protein of unknown function, DUF440 NRL03_11265 PF00912 Transglycosylase NRL03_11270 PF04269 Protein of unknown function, DUF440 NRL03_11280 PF17783 CvfB-like winged helix domain NRL03_11280 PF13509 S1 domain NRL03_11285 PF12323 Helix-turn-helix domain NRL03_11285 PF01385 Probable transposase NRL03_11285 PF07282 Putative transposase DNA-binding domain NRL03_11315 PF02525 Flavodoxin-like fold NRL03_11320 PF00892 EamA-like transporter family NRL03_11325 PF02222 ATP-grasp domain NRL03_11325 PF01370 NAD dependent epimerase/dehydratase family NRL03_11330 PF13419 Haloacid dehalogenase-like hydrolase NRL03_11345 PF00677 Lumazine binding domain NRL03_11350 PF06786 Uncharacterised protein family (UPF0253) NRL03_11355 PF01554 MatE NRL03_11385 PF00136 DNA polymerase family B NRL03_11385 PF03104 DNA polymerase family B, exonuclease domain NRL03_11390 PF05726 Pirin C-terminal cupin domain NRL03_11390 PF02678 Pirin NRL03_11400 PF03279 Bacterial lipid A biosynthesis acyltransferase NRL03_11405 PF03279 Bacterial lipid A biosynthesis acyltransferase NRL03_11415 PF03466 LysR substrate binding domain NRL03_11415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_11420 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NRL03_11420 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NRL03_11425 PF01261 Xylose isomerase-like TIM barrel NRL03_11430 PF00933 Glycosyl hydrolase family 3 N terminal domain NRL03_11440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_11440 PF03466 LysR substrate binding domain NRL03_11450 PF00232 Glycosyl hydrolase family 1 NRL03_11455 PF03466 LysR substrate binding domain NRL03_11455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_11460 PF00072 Response regulator receiver domain NRL03_11460 PF00990 Diguanylate cyclase, GGDEF domain NRL03_11465 PF00384 Molybdopterin oxidoreductase NRL03_11470 PF02634 FdhD/NarQ family NRL03_11485 PF03466 LysR substrate binding domain NRL03_11485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_11490 PF13407 Periplasmic binding protein domain NRL03_11495 PF00005 ABC transporter NRL03_11500 PF02653 Branched-chain amino acid transport system / permease component NRL03_11505 PF02653 Branched-chain amino acid transport system / permease component NRL03_11510 PF12706 Beta-lactamase superfamily domain NRL03_11535 PF02796 Helix-turn-helix domain of resolvase NRL03_11535 PF00239 Resolvase, N terminal domain NRL03_11555 PF04002 RadC-like JAB domain NRL03_11580 PF01420 Type I restriction modification DNA specificity domain NRL03_11585 PF02384 N-6 DNA Methylase NRL03_11605 PF01925 Sulfite exporter TauE/SafE NRL03_11610 PF13520 Amino acid permease NRL03_11620 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NRL03_11620 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NRL03_11625 PF00378 Enoyl-CoA hydratase/isomerase NRL03_11630 PF00378 Enoyl-CoA hydratase/isomerase NRL03_11635 PF02770 Acyl-CoA dehydrogenase, middle domain NRL03_11635 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRL03_11635 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRL03_11640 PF00171 Aldehyde dehydrogenase family NRL03_11645 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRL03_11645 PF02770 Acyl-CoA dehydrogenase, middle domain NRL03_11645 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRL03_11650 PF01039 Carboxyl transferase domain NRL03_11655 PF00378 Enoyl-CoA hydratase/isomerase NRL03_11660 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NRL03_11660 PF02785 Biotin carboxylase C-terminal domain NRL03_11660 PF00364 Biotin-requiring enzyme NRL03_11660 PF00289 Biotin carboxylase, N-terminal domain NRL03_11665 PF00682 HMGL-like NRL03_11670 PF00376 MerR family regulatory protein NRL03_11670 PF09278 MerR, DNA binding NRL03_11680 PF01184 GPR1/FUN34/yaaH family NRL03_11685 PF06167 Glucose-regulated metallo-peptidase M90 NRL03_11695 PF01235 Sodium:alanine symporter family NRL03_11700 PF00378 Enoyl-CoA hydratase/isomerase NRL03_11715 PF04341 Protein of unknown function, DUF485 NRL03_11720 PF00474 Sodium:solute symporter family NRL03_11725 PF12848 ABC transporter NRL03_11725 PF00005 ABC transporter NRL03_11730 PF13145 PPIC-type PPIASE domain NRL03_11735 PF00216 Bacterial DNA-binding protein NRL03_11740 PF05362 Lon protease (S16) C-terminal proteolytic domain NRL03_11740 PF02190 ATP-dependent protease La (LON) substrate-binding domain NRL03_11740 PF00004 ATPase family associated with various cellular activities (AAA) NRL03_11745 PF06689 ClpX C4-type zinc finger NRL03_11745 PF07724 AAA domain (Cdc48 subfamily) NRL03_11745 PF10431 C-terminal, D2-small domain, of ClpB protein NRL03_11750 PF00574 Clp protease NRL03_11755 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRL03_11755 PF05698 Bacterial trigger factor protein (TF) C-terminus NRL03_11755 PF05697 Bacterial trigger factor protein (TF) NRL03_11770 PF02687 FtsX-like permease family NRL03_11770 PF12704 MacB-like periplasmic core domain NRL03_11775 PF00005 ABC transporter NRL03_11780 PF02687 FtsX-like permease family NRL03_11780 PF12704 MacB-like periplasmic core domain NRL03_11790 PF02559 CarD-like/TRCF domain NRL03_11790 PF00270 DEAD/DEAH box helicase NRL03_11790 PF17757 UvrB interaction domain NRL03_11790 PF03461 TRCF domain NRL03_11790 PF00271 Helicase conserved C-terminal domain NRL03_11795 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain NRL03_11805 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRL03_11810 PF00892 EamA-like transporter family NRL03_11820 PF00300 Histidine phosphatase superfamily (branch 1) NRL03_11825 PF16187 Middle or third domain of peptidase_M16 NRL03_11825 PF05193 Peptidase M16 inactive domain NRL03_11825 PF00675 Insulinase (Peptidase family M16) NRL03_11830 PF05724 Thiopurine S-methyltransferase (TPMT) NRL03_11840 PF01047 MarR family NRL03_11860 PF01609 Transposase DDE domain NRL03_11865 PF00117 Glutamine amidotransferase class-I NRL03_11865 PF02540 NAD synthase NRL03_11865 PF00958 GMP synthase C terminal domain NRL03_11870 PF00571 CBS domain NRL03_11870 PF00478 IMP dehydrogenase / GMP reductase domain NRL03_11880 PF01373 Glycosyl hydrolase family 14 NRL03_11880 PF00128 Alpha amylase, catalytic domain NRL03_11880 PF03423 Carbohydrate binding domain (family 25) NRL03_11890 PF02601 Exonuclease VII, large subunit NRL03_11890 PF13742 OB-fold nucleic acid binding domain NRL03_11895 PF04055 Radical SAM superfamily NRL03_11900 PF00691 OmpA family NRL03_11915 PF18024 Helix-turn-helix domain NRL03_11915 PF00158 Sigma-54 interaction domain NRL03_11920 PF01329 Pterin 4 alpha carbinolamine dehydratase NRL03_11925 PF00351 Biopterin-dependent aromatic amino acid hydroxylase NRL03_11930 PF05128 Domain of unknown function (DUF697) NRL03_11935 PF04317 YcjX-like family, DUF463 NRL03_11945 PF06667 Phage shock protein B NRL03_11950 PF04012 PspA/IM30 family NRL03_11955 PF02954 Bacterial regulatory protein, Fis family NRL03_11955 PF00158 Sigma-54 interaction domain NRL03_11960 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRL03_11965 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_11970 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_11970 PF12911 N-terminal TM domain of oligopeptide transport permease C NRL03_11975 PF00005 ABC transporter NRL03_11975 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRL03_11980 PF00005 ABC transporter NRL03_11985 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) NRL03_11990 PF00356 Bacterial regulatory proteins, lacI family NRL03_11995 PF00367 phosphotransferase system, EIIB NRL03_11995 PF02378 Phosphotransferase system, EIIC NRL03_12000 PF00232 Glycosyl hydrolase family 1 NRL03_12005 PF00156 Phosphoribosyl transferase domain NRL03_12010 PF02674 Colicin V production protein NRL03_12015 PF02403 Seryl-tRNA synthetase N-terminal domain NRL03_12015 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NRL03_12020 PF12002 MgsA AAA+ ATPase C terminal NRL03_12020 PF16193 AAA C-terminal domain NRL03_12020 PF00004 ATPase family associated with various cellular activities (AAA) NRL03_12025 PF03548 Outer membrane lipoprotein carrier protein LolA NRL03_12030 PF13491 4TM region of DNA translocase FtsK/SpoIIIE NRL03_12030 PF17854 FtsK alpha domain NRL03_12030 PF09397 Ftsk gamma domain NRL03_12030 PF01580 FtsK/SpoIIIE family NRL03_12035 PF01037 Lrp/AsnC ligand binding domain NRL03_12040 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NRL03_12040 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NRL03_12045 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL03_12050 PF00990 Diguanylate cyclase, GGDEF domain NRL03_12050 PF05230 MASE2 domain NRL03_12055 PF05433 Glycine zipper 2TM domain NRL03_12060 PF03588 Leucyl/phenylalanyl-tRNA protein transferase NRL03_12065 PF04377 Arginine-tRNA-protein transferase, C terminus NRL03_12065 PF04376 Arginine-tRNA-protein transferase, N terminus NRL03_12070 PF01176 Translation initiation factor 1A / IF-1 NRL03_12075 PF17871 AAA lid domain NRL03_12075 PF02861 Clp amino terminal domain, pathogenicity island component NRL03_12075 PF10431 C-terminal, D2-small domain, of ClpB protein NRL03_12075 PF07724 AAA domain (Cdc48 subfamily) NRL03_12075 PF00004 ATPase family associated with various cellular activities (AAA) NRL03_12080 PF02617 ATP-dependent Clp protease adaptor protein ClpS NRL03_12085 PF00313 'Cold-shock' DNA-binding domain NRL03_12090 PF01118 Semialdehyde dehydrogenase, NAD binding domain NRL03_12090 PF02774 Semialdehyde dehydrogenase, dimerisation domain NRL03_12095 PF00893 Small Multidrug Resistance protein NRL03_12110 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding NRL03_12110 PF18381 YcaO cyclodehydratase C-terminal domain NRL03_12115 PF01226 Formate/nitrite transporter NRL03_12120 PF01228 Glycine radical NRL03_12120 PF02901 Pyruvate formate lyase-like NRL03_12125 PF03692 Putative zinc- or iron-chelating domain NRL03_12145 PF01609 Transposase DDE domain NRL03_12145 PF13006 Insertion element 4 transposase N-terminal NRL03_12150 PF02629 CoA binding domain NRL03_12150 PF00549 CoA-ligase NRL03_12155 PF08442 ATP-grasp domain NRL03_12155 PF00549 CoA-ligase NRL03_12160 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NRL03_12160 PF00364 Biotin-requiring enzyme NRL03_12160 PF02817 e3 binding domain NRL03_12165 PF16078 2-oxoglutarate dehydrogenase N-terminus NRL03_12165 PF00676 Dehydrogenase E1 component NRL03_12165 PF16870 2-oxoglutarate dehydrogenase C-terminal NRL03_12165 PF02779 Transketolase, pyrimidine binding domain NRL03_12170 PF13085 2Fe-2S iron-sulfur cluster binding domain NRL03_12175 PF00890 FAD binding domain NRL03_12175 PF02910 Fumarate reductase flavoprotein C-term NRL03_12180 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NRL03_12185 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NRL03_12190 PF00285 Citrate synthase, C-terminal domain NRL03_12205 PF02801 Beta-ketoacyl synthase, C-terminal domain NRL03_12205 PF00109 Beta-ketoacyl synthase, N-terminal domain NRL03_12210 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NRL03_12210 PF01266 FAD dependent oxidoreductase NRL03_12220 PF03606 C4-dicarboxylate anaerobic carrier NRL03_12235 PF01863 Protein of unknown function DUF45 NRL03_12250 PF01197 Ribosomal protein L31 NRL03_12255 PF00444 Ribosomal protein L36 NRL03_12260 PF12833 Helix-turn-helix domain NRL03_12260 PF02311 AraC-like ligand binding domain NRL03_12265 PF02653 Branched-chain amino acid transport system / permease component NRL03_12270 PF00005 ABC transporter NRL03_12275 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NRL03_12280 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NRL03_12285 PF00596 Class II Aldolase and Adducin N-terminal domain NRL03_12290 PF02610 L-arabinose isomerase NRL03_12290 PF11762 L-arabinose isomerase C-terminal domain NRL03_12295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_12295 PF03466 LysR substrate binding domain NRL03_12300 PF00155 Aminotransferase class I and II NRL03_12305 PF00795 Carbon-nitrogen hydrolase NRL03_12310 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL03_12320 PF03706 Lysylphosphatidylglycerol synthase TM region NRL03_12320 PF09924 Uncharacterised conserved protein (DUF2156) NRL03_12325 PF00149 Calcineurin-like phosphoesterase NRL03_12360 PF17482 Phage tail sheath C-terminal domain NRL03_12360 PF04984 Phage tail sheath protein subtilisin-like domain NRL03_12370 PF01348 Type II intron maturase NRL03_12370 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NRL03_12480 PF05866 Endodeoxyribonuclease RusA NRL03_12495 PF01555 DNA methylase NRL03_12495 PF18755 Restriction Enzyme Adenine Methylase Associated NRL03_12560 PF05154 TM2 domain NRL03_12575 PF02767 DNA polymerase III beta subunit, central domain NRL03_12575 PF02768 DNA polymerase III beta subunit, C-terminal domain NRL03_12575 PF00712 DNA polymerase III beta subunit, N-terminal domain NRL03_12605 PF00436 Single-strand binding protein family NRL03_12610 PF00589 Phage integrase family NRL03_12610 PF14659 Phage integrase, N-terminal SAM-like domain NRL03_12610 PF13356 Arm DNA-binding domain NRL03_12615 PF00929 Exonuclease NRL03_12615 PF08411 Exonuclease C-terminal NRL03_12630 PF03788 LrgA family NRL03_12635 PF04172 LrgB-like family NRL03_12640 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region NRL03_12640 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NRL03_12645 PF00501 AMP-binding enzyme NRL03_12650 PF08891 YfcL protein NRL03_12660 PF03741 Integral membrane protein TerC family NRL03_12665 PF00793 DAHP synthetase I family NRL03_12670 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NRL03_12675 PF00266 Aminotransferase class-V NRL03_12680 PF01012 Electron transfer flavoprotein domain NRL03_12680 PF00766 Electron transfer flavoprotein FAD-binding domain NRL03_12685 PF01012 Electron transfer flavoprotein domain NRL03_12695 PF01544 CorA-like Mg2+ transporter protein NRL03_12700 PF11143 Protein of unknown function (DUF2919) NRL03_12715 PF07715 TonB-dependent Receptor Plug Domain NRL03_12715 PF00593 TonB dependent receptor NRL03_12720 PF01032 FecCD transport family NRL03_12725 PF01032 FecCD transport family NRL03_12730 PF00005 ABC transporter NRL03_12735 PF01648 4'-phosphopantetheinyl transferase superfamily NRL03_12735 PF17837 4'-phosphopantetheinyl transferase N-terminal domain NRL03_12740 PF01497 Periplasmic binding protein NRL03_12745 PF00550 Phosphopantetheine attachment site NRL03_12745 PF00501 AMP-binding enzyme NRL03_12745 PF13193 AMP-binding enzyme C-terminal domain NRL03_12745 PF00668 Condensation domain NRL03_12745 PF00975 Thioesterase domain NRL03_12750 PF07993 Male sterility protein NRL03_12750 PF00550 Phosphopantetheine attachment site NRL03_12750 PF00501 AMP-binding enzyme NRL03_12750 PF00668 Condensation domain NRL03_12750 PF13193 AMP-binding enzyme C-terminal domain NRL03_12760 PF13193 AMP-binding enzyme C-terminal domain NRL03_12760 PF00668 Condensation domain NRL03_12760 PF00550 Phosphopantetheine attachment site NRL03_12760 PF00975 Thioesterase domain NRL03_12760 PF00501 AMP-binding enzyme NRL03_12765 PF00550 Phosphopantetheine attachment site NRL03_12765 PF00857 Isochorismatase family NRL03_12770 PF13193 AMP-binding enzyme C-terminal domain NRL03_12770 PF00501 AMP-binding enzyme NRL03_12775 PF00425 chorismate binding enzyme NRL03_12780 PF07273 Protein of unknown function (DUF1439) NRL03_12790 PF00483 Nucleotidyl transferase NRL03_12795 PF00990 Diguanylate cyclase, GGDEF domain NRL03_12795 PF03707 Bacterial signalling protein N terminal repeat NRL03_12795 PF00563 EAL domain NRL03_12810 PF00672 HAMP domain NRL03_12810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL03_12810 PF17200 Single Cache domain 2 NRL03_12815 PF00294 pfkB family carbohydrate kinase NRL03_12820 PF01124 MAPEG family NRL03_12825 PF00762 Ferrochelatase NRL03_12830 PF05191 Adenylate kinase, active site lid NRL03_12835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_12835 PF00183 Hsp90 protein NRL03_12840 PF13662 Toprim domain NRL03_12840 PF02132 RecR protein NRL03_12855 PF00916 Sulfate permease family NRL03_12855 PF01740 STAS domain NRL03_12870 PF14403 Circularly permuted ATP-grasp type 2 NRL03_12875 PF14403 Circularly permuted ATP-grasp type 2 NRL03_12875 PF04168 A predicted alpha-helical domain with a conserved ER motif. NRL03_12905 PF03239 Iron permease FTR1 family NRL03_12910 PF01593 Flavin containing amine oxidoreductase NRL03_12930 PF07690 Major Facilitator Superfamily NRL03_12940 PF03600 Citrate transporter NRL03_12950 PF00005 ABC transporter NRL03_12955 PF02687 FtsX-like permease family NRL03_12955 PF12704 MacB-like periplasmic core domain NRL03_12970 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_12970 PF01610 Transposase NRL03_12970 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_12980 PF02589 LUD domain NRL03_12985 PF02589 LUD domain NRL03_12985 PF11870 Domain of unknown function (DUF3390) NRL03_12985 PF13183 4Fe-4S dicluster domain NRL03_12990 PF02754 Cysteine-rich domain NRL03_12995 PF02652 L-lactate permease NRL03_13000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_13000 PF03466 LysR substrate binding domain NRL03_13025 PF01625 Peptide methionine sulfoxide reductase NRL03_13030 PF00696 Amino acid kinase family NRL03_13030 PF00583 Acetyltransferase (GNAT) family NRL03_13035 PF00696 Amino acid kinase family NRL03_13035 PF01842 ACT domain NRL03_13045 PF00884 Sulfatase NRL03_13050 PF01906 Putative heavy-metal-binding NRL03_13055 PF01610 Transposase NRL03_13055 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_13055 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_13060 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL03_13065 PF05728 Uncharacterised protein family (UPF0227) NRL03_13070 PF08439 Oligopeptidase F NRL03_13070 PF01432 Peptidase family M3 NRL03_13075 PF01432 Peptidase family M3 NRL03_13075 PF08439 Oligopeptidase F NRL03_13080 PF05661 Protein of unknown function (DUF808) NRL03_13090 PF13426 PAS domain NRL03_13090 PF08447 PAS fold NRL03_13090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL03_13095 PF02355 Protein export membrane protein NRL03_13095 PF07549 SecD/SecF GG Motif NRL03_13100 PF02355 Protein export membrane protein NRL03_13100 PF07549 SecD/SecF GG Motif NRL03_13100 PF13721 SecD export protein N-terminal TM region NRL03_13135 PF01230 HIT domain NRL03_13140 PF00672 HAMP domain NRL03_13140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL03_13150 PF01979 Amidohydrolase family NRL03_13170 PF00375 Sodium:dicarboxylate symporter family NRL03_13180 PF01610 Transposase NRL03_13180 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_13180 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_13185 PF00842 Alanine racemase, C-terminal domain NRL03_13185 PF01168 Alanine racemase, N-terminal domain NRL03_13190 PF03741 Integral membrane protein TerC family NRL03_13195 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRL03_13195 PF00005 ABC transporter NRL03_13200 PF00005 ABC transporter NRL03_13200 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRL03_13205 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_13205 PF12911 N-terminal TM domain of oligopeptide transport permease C NRL03_13210 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_13215 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRL03_13220 PF01914 MarC family integral membrane protein NRL03_13225 PF00465 Iron-containing alcohol dehydrogenase NRL03_13225 PF00171 Aldehyde dehydrogenase family NRL03_13230 PF00072 Response regulator receiver domain NRL03_13235 PF07694 5TMR of 5TMR-LYT NRL03_13235 PF06580 Histidine kinase NRL03_13240 PF04397 LytTr DNA-binding domain NRL03_13240 PF00072 Response regulator receiver domain NRL03_13245 PF02554 Carbon starvation protein CstA NRL03_13250 PF00924 Mechanosensitive ion channel NRL03_13250 PF12795 Mechanosensitive ion channel porin domain NRL03_13250 PF12794 Mechanosensitive ion channel inner membrane domain 1 NRL03_13255 PF12323 Helix-turn-helix domain NRL03_13255 PF07282 Putative transposase DNA-binding domain NRL03_13255 PF01385 Probable transposase NRL03_13265 PF11742 Protein of unknown function (DUF3302) NRL03_13270 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRL03_13270 PF00529 HlyD membrane-fusion protein of T1SS NRL03_13275 PF04851 Type III restriction enzyme, res subunit NRL03_13275 PF00271 Helicase conserved C-terminal domain NRL03_13280 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family NRL03_13285 PF00462 Glutaredoxin NRL03_13295 PF00155 Aminotransferase class I and II NRL03_13300 PF03606 C4-dicarboxylate anaerobic carrier NRL03_13310 PF07055 Enoyl reductase FAD binding domain NRL03_13310 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NRL03_13310 PF12241 Trans-2-enoyl-CoA reductase catalytic region NRL03_13325 PF00672 HAMP domain NRL03_13325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL03_13325 PF17200 Single Cache domain 2 NRL03_13335 PF00892 EamA-like transporter family NRL03_13340 PF02508 Rnf-Nqr subunit, membrane protein NRL03_13345 PF04060 Putative Fe-S cluster NRL03_13350 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NRL03_13350 PF12838 4Fe-4S dicluster domain NRL03_13350 PF13375 RnfC Barrel sandwich hybrid domain NRL03_13350 PF10531 SLBB domain NRL03_13355 PF03116 NQR2, RnfD, RnfE family NRL03_13360 PF04205 FMN-binding domain NRL03_13365 PF02508 Rnf-Nqr subunit, membrane protein NRL03_13370 PF00730 HhH-GPD superfamily base excision DNA repair protein NRL03_13370 PF00633 Helix-hairpin-helix motif NRL03_13370 PF10576 Iron-sulfur binding domain of endonuclease III NRL03_13375 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRL03_13380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL03_13380 PF00672 HAMP domain NRL03_13380 PF12729 Four helix bundle sensory module for signal transduction NRL03_13385 PF02535 ZIP Zinc transporter NRL03_13390 PF01048 Phosphorylase superfamily NRL03_13400 PF01497 Periplasmic binding protein NRL03_13405 PF02719 Polysaccharide biosynthesis protein NRL03_13410 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NRL03_13420 PF02348 Cytidylyltransferase NRL03_13425 PF00202 Aminotransferase class-III NRL03_13440 PF03102 NeuB family NRL03_13440 PF08666 SAF domain NRL03_13480 PF02561 Flagellar protein FliS NRL03_13485 PF02465 Flagellar hook-associated protein 2 N-terminus NRL03_13485 PF07195 Flagellar hook-associated protein 2 C-terminus NRL03_13485 PF07196 Flagellin hook IN motif NRL03_13495 PF00700 Bacterial flagellin C-terminal helical region NRL03_13495 PF07196 Flagellin hook IN motif NRL03_13495 PF00669 Bacterial flagellin N-terminal helical region NRL03_13515 PF01609 Transposase DDE domain NRL03_13520 PF03458 UPF0126 domain NRL03_13530 PF02568 Thiamine biosynthesis protein (ThiI) NRL03_13530 PF02926 THUMP domain NRL03_13540 PF06832 Penicillin-Binding Protein C-terminus Family NRL03_13540 PF00912 Transglycosylase NRL03_13540 PF00905 Penicillin binding protein transpeptidase domain NRL03_13545 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain NRL03_13545 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain NRL03_13545 PF00207 Alpha-2-macroglobulin family NRL03_13545 PF07678 A-macroglobulin TED domain NRL03_13545 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain NRL03_13545 PF11974 Bacterial alpha-2-macroglobulin MG3 domain NRL03_13545 PF17962 Bacterial macroglobulin domain 6 NRL03_13545 PF01835 MG2 domain NRL03_13545 PF07703 Alpha-2-macroglobulin bait region domain NRL03_13550 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL03_13550 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NRL03_13555 PF03707 Bacterial signalling protein N terminal repeat NRL03_13555 PF00990 Diguanylate cyclase, GGDEF domain NRL03_13555 PF00563 EAL domain NRL03_13560 PF04055 Radical SAM superfamily NRL03_13570 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_13575 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_13580 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL03_13585 PF00005 ABC transporter NRL03_13590 PF03956 Lysine exporter LysO NRL03_13595 PF01979 Amidohydrolase family NRL03_13600 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL03_13610 PF04336 Acyl carrier protein phosphodiesterase NRL03_13625 PF03960 ArsC family NRL03_13630 PF00578 AhpC/TSA family NRL03_13635 PF01435 Peptidase family M48 NRL03_13635 PF13181 Tetratricopeptide repeat NRL03_13640 PF01206 Sulfurtransferase TusA NRL03_13645 PF01594 AI-2E family transporter NRL03_13655 PF00561 alpha/beta hydrolase fold NRL03_13660 PF03976 Polyphosphate kinase 2 (PPK2) NRL03_13665 PF00005 ABC transporter NRL03_13665 PF08402 TOBE domain NRL03_13670 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_13675 PF14785 Maltose transport system permease protein MalF P2 domain NRL03_13675 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_13680 PF01547 Bacterial extracellular solute-binding protein NRL03_13685 PF04245 37-kD nucleoid-associated bacterial protein NRL03_13690 PF07208 Protein of unknown function (DUF1414) NRL03_13695 PF11893 Domain of unknown function (DUF3413) NRL03_13695 PF00884 Sulfatase NRL03_13700 PF07715 TonB-dependent Receptor Plug Domain NRL03_13700 PF00593 TonB dependent receptor NRL03_13705 PF00326 Prolyl oligopeptidase family NRL03_13705 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NRL03_13725 PF03974 Ecotin NRL03_13730 PF04219 Protein of unknown function, DUF NRL03_13735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_13735 PF03466 LysR substrate binding domain NRL03_13740 PF01817 Chorismate mutase type II NRL03_13740 PF02153 Prephenate dehydrogenase NRL03_13745 PF00793 DAHP synthetase I family NRL03_13750 PF03009 Glycerophosphoryl diester phosphodiesterase family NRL03_13755 PF01266 FAD dependent oxidoreductase NRL03_13755 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NRL03_13760 PF00455 DeoR C terminal sensor domain NRL03_13760 PF08220 DeoR-like helix-turn-helix domain NRL03_13765 PF07690 Major Facilitator Superfamily NRL03_13770 PF12323 Helix-turn-helix domain NRL03_13780 PF00230 Major intrinsic protein NRL03_13785 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NRL03_13785 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NRL03_13790 PF03466 LysR substrate binding domain NRL03_13790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_13810 PF00248 Aldo/keto reductase family NRL03_13815 PF07690 Major Facilitator Superfamily NRL03_13825 PF02322 Cytochrome bd terminal oxidase subunit II NRL03_13830 PF01654 Cytochrome bd terminal oxidase subunit I NRL03_13835 PF00392 Bacterial regulatory proteins, gntR family NRL03_13835 PF00155 Aminotransferase class I and II NRL03_13845 PF04391 Protein of unknown function (DUF533) NRL03_13855 PF10689 Protein of unknown function (DUF2496) NRL03_13865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_13865 PF03466 LysR substrate binding domain NRL03_13875 PF07690 Major Facilitator Superfamily NRL03_13880 PF00849 RNA pseudouridylate synthase NRL03_13880 PF01479 S4 domain NRL03_13885 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NRL03_13885 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NRL03_13895 PF12323 Helix-turn-helix domain NRL03_13895 PF01385 Probable transposase NRL03_13895 PF07282 Putative transposase DNA-binding domain NRL03_13915 PF00271 Helicase conserved C-terminal domain NRL03_13915 PF04851 Type III restriction enzyme, res subunit NRL03_13920 PF00300 Histidine phosphatase superfamily (branch 1) NRL03_13925 PF00563 EAL domain NRL03_13925 PF03707 Bacterial signalling protein N terminal repeat NRL03_13925 PF00990 Diguanylate cyclase, GGDEF domain NRL03_13940 PF17944 Arginine decarboxylase C-terminal helical extension NRL03_13940 PF17810 Arginine decarboxylase helical bundle domain NRL03_13940 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NRL03_13945 PF07687 Peptidase dimerisation domain NRL03_13945 PF01546 Peptidase family M20/M25/M40 NRL03_13960 PF05221 S-adenosyl-L-homocysteine hydrolase NRL03_13960 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NRL03_13970 PF04264 YceI-like domain NRL03_13975 PF03466 LysR substrate binding domain NRL03_13975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_13985 PF01268 Formate--tetrahydrofolate ligase NRL03_13990 PF17200 Single Cache domain 2 NRL03_13990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL03_13990 PF00672 HAMP domain NRL03_13995 PF01227 GTP cyclohydrolase I NRL03_14000 PF00994 Probable molybdopterin binding domain NRL03_14000 PF03454 MoeA C-terminal region (domain IV) NRL03_14000 PF03453 MoeA N-terminal region (domain I and II) NRL03_14005 PF00899 ThiF family NRL03_14010 PF12697 Alpha/beta hydrolase family NRL03_14015 PF00005 ABC transporter NRL03_14015 PF03459 TOBE domain NRL03_14020 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_14030 PF02391 MoaE protein NRL03_14035 PF02597 ThiS family NRL03_14040 PF01967 MoaC family NRL03_14045 PF00994 Probable molybdopterin binding domain NRL03_14050 PF03264 NapC/NirT cytochrome c family, N-terminal region NRL03_14055 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) NRL03_14060 PF12801 4Fe-4S binding domain NRL03_14060 PF13237 4Fe-4S dicluster domain NRL03_14065 PF12838 4Fe-4S dicluster domain NRL03_14065 PF12800 4Fe-4S binding domain NRL03_14070 PF01568 Molydopterin dinucleotide binding domain NRL03_14070 PF10518 TAT (twin-arginine translocation) pathway signal sequence NRL03_14070 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NRL03_14070 PF00384 Molybdopterin oxidoreductase NRL03_14080 PF13187 4Fe-4S dicluster domain NRL03_14080 PF12800 4Fe-4S binding domain NRL03_14080 PF00037 4Fe-4S binding domain NRL03_14085 PF04055 Radical SAM superfamily NRL03_14085 PF06463 Molybdenum Cofactor Synthesis C NRL03_14090 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term NRL03_14090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_14090 PF07730 Histidine kinase NRL03_14090 PF00672 HAMP domain NRL03_14095 PF00196 Bacterial regulatory proteins, luxR family NRL03_14095 PF00072 Response regulator receiver domain NRL03_14110 PF09456 RcsC Alpha-Beta-Loop (ABL) NRL03_14110 PF00072 Response regulator receiver domain NRL03_14110 PF00512 His Kinase A (phospho-acceptor) domain NRL03_14110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_14120 PF01933 Uncharacterised protein family UPF0052 NRL03_14130 PF13230 Glutamine amidotransferases class-II NRL03_14135 PF13580 SIS domain NRL03_14140 PF02770 Acyl-CoA dehydrogenase, middle domain NRL03_14140 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRL03_14140 PF09317 Domain of unknown function (DUF1974) NRL03_14140 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRL03_14155 PF00929 Exonuclease NRL03_14160 PF00075 RNase H NRL03_14165 PF08241 Methyltransferase domain NRL03_14170 PF00753 Metallo-beta-lactamase superfamily NRL03_14170 PF16123 Hydroxyacylglutathione hydrolase C-terminus NRL03_14180 PF01464 Transglycosylase SLT domain NRL03_14180 PF01476 LysM domain NRL03_14185 PF03372 Endonuclease/Exonuclease/phosphatase family NRL03_14195 PF03061 Thioesterase superfamily NRL03_14205 PF00356 Bacterial regulatory proteins, lacI family NRL03_14210 PF14718 Soluble lytic murein transglycosylase L domain NRL03_14210 PF01464 Transglycosylase SLT domain NRL03_14215 PF03707 Bacterial signalling protein N terminal repeat NRL03_14215 PF00990 Diguanylate cyclase, GGDEF domain NRL03_14215 PF00563 EAL domain NRL03_14220 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NRL03_14240 PF04357 TamB, inner membrane protein subunit of TAM complex NRL03_14245 PF07244 Surface antigen variable number repeat NRL03_14245 PF17243 POTRA domain TamA domain 1 NRL03_14245 PF01103 Surface antigen NRL03_14265 PF02627 Carboxymuconolactone decarboxylase family NRL03_14270 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NRL03_14270 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL03_14270 PF00403 Heavy-metal-associated domain NRL03_14275 PF13416 Bacterial extracellular solute-binding protein NRL03_14285 PF00005 ABC transporter NRL03_14290 PF01066 CDP-alcohol phosphatidyltransferase NRL03_14295 PF13406 Transglycosylase SLT domain NRL03_14300 PF01047 MarR family NRL03_14310 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NRL03_14310 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NRL03_14310 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NRL03_14310 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NRL03_14315 PF03925 SeqA protein C-terminal domain NRL03_14315 PF17206 SeqA protein N-terminal domain NRL03_14320 PF12697 Alpha/beta hydrolase family NRL03_14330 PF01402 Ribbon-helix-helix protein, copG family NRL03_14335 PF00258 Flavodoxin NRL03_14345 PF01475 Ferric uptake regulator family NRL03_14350 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_14350 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_14350 PF01610 Transposase NRL03_14355 PF00749 tRNA synthetases class I (E and Q), catalytic domain NRL03_14355 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain NRL03_14360 PF03173 Putative carbohydrate binding domain NRL03_14360 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain NRL03_14360 PF02838 Glycosyl hydrolase family 20, domain 2 NRL03_14360 PF00728 Glycosyl hydrolase family 20, catalytic domain NRL03_14365 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NRL03_14365 PF00367 phosphotransferase system, EIIB NRL03_14365 PF02378 Phosphotransferase system, EIIC NRL03_14370 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NRL03_14375 PF01979 Amidohydrolase family NRL03_14380 PF01047 MarR family NRL03_14380 PF00480 ROK family NRL03_14385 PF08019 Phosphoethanolamine transferase EptA/EptB NRL03_14385 PF00884 Sulfatase NRL03_14390 PF01709 Transcriptional regulator NRL03_14395 PF02938 GAD domain NRL03_14395 PF00152 tRNA synthetases class II (D, K and N) NRL03_14395 PF01336 OB-fold nucleic acid binding domain NRL03_14400 PF01904 Protein of unknown function DUF72 NRL03_14405 PF13649 Methyltransferase domain NRL03_14410 PF08003 Protein of unknown function (DUF1698) NRL03_14430 PF03466 LysR substrate binding domain NRL03_14430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_14435 PF00877 NlpC/P60 family NRL03_14445 PF00171 Aldehyde dehydrogenase family NRL03_14450 PF00440 Bacterial regulatory proteins, tetR family NRL03_14450 PF08359 YsiA-like protein, C-terminal region NRL03_14460 PF00465 Iron-containing alcohol dehydrogenase NRL03_14465 PF00291 Pyridoxal-phosphate dependent enzyme NRL03_14485 PF01554 MatE NRL03_14495 PF04325 Protein of unknown function (DUF465) NRL03_14500 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg NRL03_14500 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase NRL03_14500 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II NRL03_14500 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRL03_14500 PF10371 Domain of unknown function NRL03_14505 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NRL03_14505 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NRL03_14505 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL03_14510 PF03473 MOSC domain NRL03_14510 PF00111 2Fe-2S iron-sulfur cluster binding domain NRL03_14510 PF03476 MOSC N-terminal beta barrel domain NRL03_14510 PF03473 MOSC domain NRL03_14510 PF00111 2Fe-2S iron-sulfur cluster binding domain NRL03_14510 PF03476 MOSC N-terminal beta barrel domain NRL03_14515 PF01435 Peptidase family M48 NRL03_14525 PF12697 Alpha/beta hydrolase family NRL03_14525 PF08241 Methyltransferase domain NRL03_14530 PF00155 Aminotransferase class I and II NRL03_14535 PF06968 Biotin and Thiamin Synthesis associated domain NRL03_14535 PF04055 Radical SAM superfamily NRL03_14540 PF00202 Aminotransferase class-III NRL03_14555 PF01336 OB-fold nucleic acid binding domain NRL03_14555 PF00152 tRNA synthetases class II (D, K and N) NRL03_14560 PF03605 Anaerobic c4-dicarboxylate membrane transporter NRL03_14570 PF07687 Peptidase dimerisation domain NRL03_14570 PF01546 Peptidase family M20/M25/M40 NRL03_14575 PF03606 C4-dicarboxylate anaerobic carrier NRL03_14585 PF03960 ArsC family NRL03_14590 PF01546 Peptidase family M20/M25/M40 NRL03_14590 PF07687 Peptidase dimerisation domain NRL03_14595 PF02557 D-alanyl-D-alanine carboxypeptidase NRL03_14605 PF02080 TrkA-C domain NRL03_14605 PF00999 Sodium/hydrogen exchanger family NRL03_14605 PF03471 Transporter associated domain NRL03_14615 PF01810 LysE type translocator NRL03_14620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL03_14620 PF00672 HAMP domain NRL03_14625 PF07509 Protein of unknown function (DUF1523) NRL03_14640 PF01156 Inosine-uridine preferring nucleoside hydrolase NRL03_14645 PF00849 RNA pseudouridylate synthase NRL03_14650 PF01048 Phosphorylase superfamily NRL03_14655 PF00465 Iron-containing alcohol dehydrogenase NRL03_14660 PF04355 SmpA / OmlA family NRL03_14665 PF13460 NAD(P)H-binding NRL03_14670 PF03658 RnfH family Ubiquitin NRL03_14675 PF03364 Polyketide cyclase / dehydrase and lipid transport NRL03_14680 PF01668 SmpB protein NRL03_14690 PF00392 Bacterial regulatory proteins, gntR family NRL03_14690 PF07729 FCD domain NRL03_14695 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NRL03_14705 PF03480 Bacterial extracellular solute-binding protein, family 7 NRL03_14710 PF02614 Glucuronate isomerase NRL03_14715 PF08125 Mannitol dehydrogenase C-terminal domain NRL03_14715 PF01232 Mannitol dehydrogenase Rossmann domain NRL03_14720 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus NRL03_14720 PF08666 SAF domain NRL03_14725 PF10688 Bacterial inner membrane protein NRL03_14730 PF00294 pfkB family carbohydrate kinase NRL03_14735 PF01081 KDPG and KHG aldolase NRL03_14750 PF13508 Acetyltransferase (GNAT) domain NRL03_14770 PF01546 Peptidase family M20/M25/M40 NRL03_14775 PF03466 LysR substrate binding domain NRL03_14775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_14780 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region NRL03_14780 PF01243 Pyridoxamine 5'-phosphate oxidase NRL03_14795 PF01189 16S rRNA methyltransferase RsmB/F NRL03_14795 PF01029 NusB family NRL03_14800 PF00462 Glutaredoxin NRL03_14805 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NRL03_14805 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NRL03_14810 PF04333 MlaA lipoprotein NRL03_14820 PF03918 Cytochrome C biogenesis protein NRL03_14825 PF08534 Redoxin NRL03_14830 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal NRL03_14830 PF01578 Cytochrome C assembly protein NRL03_14835 PF03100 CcmE NRL03_14840 PF04995 Heme exporter protein D (CcmD) NRL03_14845 PF01578 Cytochrome C assembly protein NRL03_14850 PF03379 CcmB protein NRL03_14855 PF00005 ABC transporter NRL03_14865 PF01584 CheW-like domain NRL03_14875 PF13614 AAA domain NRL03_14880 PF13677 Membrane MotB of proton-channel complex MotA/MotB NRL03_14880 PF00691 OmpA family NRL03_14885 PF01618 MotA/TolQ/ExbB proton channel family NRL03_14890 PF00072 Response regulator receiver domain NRL03_14890 PF01339 CheB methylesterase NRL03_14895 PF01584 CheW-like domain NRL03_14895 PF02895 Signal transducing histidine kinase, homodimeric domain NRL03_14895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_14895 PF01627 Hpt domain NRL03_14895 PF00072 Response regulator receiver domain NRL03_14900 PF04344 Chemotaxis phosphatase, CheZ NRL03_14905 PF00072 Response regulator receiver domain NRL03_14910 PF04539 Sigma-70 region 3 NRL03_14910 PF04545 Sigma-70, region 4 NRL03_14910 PF04542 Sigma-70 region 2 NRL03_14915 PF10609 NUBPL iron-transfer P-loop NTPase NRL03_14920 PF00448 SRP54-type protein, GTPase domain NRL03_14925 PF00771 FHIPEP family NRL03_14930 PF01312 FlhB HrpN YscU SpaS Family NRL03_14935 PF01311 Bacterial export proteins, family 1 NRL03_14940 PF01313 Bacterial export proteins, family 3 NRL03_14945 PF00813 FliP family NRL03_14950 PF04347 Flagellar biosynthesis protein, FliO NRL03_14955 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NRL03_14960 PF02154 Flagellar motor switch protein FliM NRL03_14960 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NRL03_14980 PF18269 T3SS EscN ATPase C-terminal domain NRL03_14980 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NRL03_14990 PF14842 FliG N-terminal domain NRL03_14990 PF14841 FliG middle domain NRL03_14990 PF01706 FliG C-terminal domain NRL03_14995 PF01514 Secretory protein of YscJ/FliF family NRL03_14995 PF08345 Flagellar M-ring protein C-terminal NRL03_15000 PF02049 Flagellar hook-basal body complex protein FliE NRL03_15005 PF01609 Transposase DDE domain NRL03_15005 PF13006 Insertion element 4 transposase N-terminal NRL03_15015 PF03960 ArsC family NRL03_15020 PF01758 Sodium Bile acid symporter family NRL03_15025 PF01022 Bacterial regulatory protein, arsR family NRL03_15030 PF00072 Response regulator receiver domain NRL03_15100 PF00892 EamA-like transporter family NRL03_15105 PF00884 Sulfatase NRL03_15105 PF08019 Phosphoethanolamine transferase EptA/EptB NRL03_15115 PF01609 Transposase DDE domain NRL03_15135 PF01609 Transposase DDE domain NRL03_15150 PF01219 Prokaryotic diacylglycerol kinase NRL03_15155 PF09722 Protein of unknown function (DUF2384) NRL03_15185 PF01609 Transposase DDE domain NRL03_15185 PF13808 DDE_Tnp_1-associated NRL03_15190 PF04717 Type VI secretion system, phage-baseplate injector NRL03_15195 PF01609 Transposase DDE domain NRL03_15195 PF05598 Transposase domain (DUF772) NRL03_15200 PF13426 PAS domain NRL03_15200 PF08448 PAS fold NRL03_15200 PF08447 PAS fold NRL03_15200 PF05231 MASE1 NRL03_15200 PF00990 Diguanylate cyclase, GGDEF domain NRL03_15200 PF00563 EAL domain NRL03_15205 PF01609 Transposase DDE domain NRL03_15205 PF05598 Transposase domain (DUF772) NRL03_15210 PF00919 Uncharacterized protein family UPF0004 NRL03_15210 PF04055 Radical SAM superfamily NRL03_15210 PF18693 TRAM domain NRL03_15215 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRL03_15220 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_15225 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_15225 PF12911 N-terminal TM domain of oligopeptide transport permease C NRL03_15230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRL03_15230 PF00005 ABC transporter NRL03_15235 PF00005 ABC transporter NRL03_15235 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRL03_15245 PF01869 BadF/BadG/BcrA/BcrD ATPase family NRL03_15250 PF00728 Glycosyl hydrolase family 20, catalytic domain NRL03_15250 PF02838 Glycosyl hydrolase family 20, domain 2 NRL03_15255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL03_15255 PF08447 PAS fold NRL03_15270 PF08272 Topoisomerase I zinc-ribbon-like NRL03_15270 PF01131 DNA topoisomerase NRL03_15270 PF01751 Toprim domain NRL03_15270 PF01396 Topoisomerase DNA binding C4 zinc finger NRL03_15275 PF04996 Succinylarginine dihydrolase NRL03_15280 PF01343 Peptidase family S49 NRL03_15280 PF08496 Peptidase family S49 N-terminal NRL03_15285 PF00106 short chain dehydrogenase NRL03_15295 PF07690 Major Facilitator Superfamily NRL03_15300 PF00155 Aminotransferase class I and II NRL03_15310 PF03466 LysR substrate binding domain NRL03_15310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_15315 PF00709 Adenylosuccinate synthetase NRL03_15320 PF01161 Phosphatidylethanolamine-binding protein NRL03_15330 PF01204 Trehalase NRL03_15335 PF00579 tRNA synthetases class I (W and Y) NRL03_15340 PF01476 LysM domain NRL03_15340 PF01551 Peptidase family M23 NRL03_15340 PF08525 Opacity-associated protein A N-terminal motif NRL03_15345 PF03702 Anhydro-N-acetylmuramic acid kinase NRL03_15360 PF01042 Endoribonuclease L-PSP NRL03_15375 PF02779 Transketolase, pyrimidine binding domain NRL03_15375 PF02780 Transketolase, C-terminal domain NRL03_15375 PF00456 Transketolase, thiamine diphosphate binding domain NRL03_15380 PF02773 S-adenosylmethionine synthetase, C-terminal domain NRL03_15380 PF02772 S-adenosylmethionine synthetase, central domain NRL03_15380 PF00438 S-adenosylmethionine synthetase, N-terminal domain NRL03_15385 PF10263 SprT-like family NRL03_15385 PF17283 SprT-like zinc ribbon domain NRL03_15390 PF04231 Endonuclease I NRL03_15395 PF04452 RNA methyltransferase NRL03_15400 PF02951 Prokaryotic glutathione synthetase, N-terminal domain NRL03_15400 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain NRL03_15405 PF02622 Uncharacterized ACR, COG1678 NRL03_15410 PF03652 Holliday junction resolvase NRL03_15415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_15415 PF03466 LysR substrate binding domain NRL03_15420 PF07690 Major Facilitator Superfamily NRL03_15425 PF00144 Beta-lactamase NRL03_15430 PF01235 Sodium:alanine symporter family NRL03_15435 PF00923 Transaldolase/Fructose-6-phosphate aldolase NRL03_15450 PF03167 Uracil DNA glycosylase superfamily NRL03_15455 PF01228 Glycine radical NRL03_15460 PF00375 Sodium:dicarboxylate symporter family NRL03_15465 PF00793 DAHP synthetase I family NRL03_15470 PF13369 Transglutaminase-like superfamily NRL03_15480 PF13847 Methyltransferase domain NRL03_15480 PF17827 PrmC N-terminal domain NRL03_15485 PF00472 RF-1 domain NRL03_15485 PF03462 PCRF domain NRL03_15490 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NRL03_15490 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NRL03_15490 PF01488 Shikimate / quinate 5-dehydrogenase NRL03_15495 PF03550 Outer membrane lipoprotein LolB NRL03_15500 PF08544 GHMP kinases C terminal NRL03_15500 PF00288 GHMP kinases N terminal domain NRL03_15510 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NRL03_15510 PF14572 Phosphoribosyl synthetase-associated domain NRL03_15515 PF01195 Peptidyl-tRNA hydrolase NRL03_15520 PF01926 50S ribosome-binding GTPase NRL03_15520 PF06071 Protein of unknown function (DUF933) NRL03_15525 PF01610 Transposase NRL03_15525 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_15525 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_15570 PF02080 TrkA-C domain NRL03_15570 PF03600 Citrate transporter NRL03_15575 PF04266 ASCH domain NRL03_15580 PF07859 alpha/beta hydrolase fold NRL03_15590 PF07690 Major Facilitator Superfamily NRL03_15595 PF13419 Haloacid dehalogenase-like hydrolase NRL03_15625 PF01609 Transposase DDE domain NRL03_15650 PF00171 Aldehyde dehydrogenase family NRL03_15655 PF04958 Arginine N-succinyltransferase beta subunit NRL03_15660 PF00202 Aminotransferase class-III NRL03_15665 PF00117 Glutamine amidotransferase class-I NRL03_15675 PF00579 tRNA synthetases class I (W and Y) NRL03_15680 PF13419 Haloacid dehalogenase-like hydrolase NRL03_15685 PF00834 Ribulose-phosphate 3 epimerase family NRL03_15690 PF02086 D12 class N6 adenine-specific DNA methyltransferase NRL03_15695 PF05036 Sporulation related domain NRL03_15700 PF01761 3-dehydroquinate synthase NRL03_15705 PF01202 Shikimate kinase NRL03_15710 PF11741 AMIN domain NRL03_15710 PF03958 Bacterial type II/III secretion system short domain NRL03_15710 PF07660 Secretin and TonB N terminus short domain NRL03_15710 PF00263 Bacterial type II and III secretion system protein NRL03_15720 PF04350 Pilus assembly protein, PilO NRL03_15730 PF11104 Type IV pilus assembly protein PilM; NRL03_15735 PF00905 Penicillin binding protein transpeptidase domain NRL03_15735 PF17092 Penicillin-binding protein OB-like domain NRL03_15735 PF00912 Transglycosylase NRL03_15740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_15740 PF03466 LysR substrate binding domain NRL03_15750 PF13006 Insertion element 4 transposase N-terminal NRL03_15750 PF01609 Transposase DDE domain NRL03_15760 PF03466 LysR substrate binding domain NRL03_15760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_15775 PF01476 LysM domain NRL03_15775 PF08525 Opacity-associated protein A N-terminal motif NRL03_15775 PF01551 Peptidase family M23 NRL03_15785 PF00924 Mechanosensitive ion channel NRL03_15785 PF12795 Mechanosensitive ion channel porin domain NRL03_15785 PF12794 Mechanosensitive ion channel inner membrane domain 1 NRL03_15790 PF03009 Glycerophosphoryl diester phosphodiesterase family NRL03_15795 PF02743 Cache domain NRL03_15795 PF00672 HAMP domain NRL03_15795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL03_15800 PF00890 FAD binding domain NRL03_15800 PF02910 Fumarate reductase flavoprotein C-term NRL03_15805 PF13085 2Fe-2S iron-sulfur cluster binding domain NRL03_15805 PF13183 4Fe-4S dicluster domain NRL03_15810 PF02300 Fumarate reductase subunit C NRL03_15815 PF02313 Fumarate reductase subunit D NRL03_15830 PF06224 Winged helix DNA-binding domain NRL03_15835 PF13847 Methyltransferase domain NRL03_15845 PF00501 AMP-binding enzyme NRL03_15855 PF00106 short chain dehydrogenase NRL03_15865 PF00072 Response regulator receiver domain NRL03_15865 PF00486 Transcriptional regulatory protein, C terminal NRL03_15870 PF00512 His Kinase A (phospho-acceptor) domain NRL03_15870 PF08521 Two-component sensor kinase N-terminal NRL03_15870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_15875 PF18030 RimK PreATP-grasp domain NRL03_15875 PF08443 RimK-like ATP-grasp domain NRL03_15880 PF00478 IMP dehydrogenase / GMP reductase domain NRL03_15890 PF01132 Elongation factor P (EF-P) OB domain NRL03_15890 PF08207 Elongation factor P (EF-P) KOW-like domain NRL03_15890 PF09285 Elongation factor P, C-terminal NRL03_15895 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_15900 PF00005 ABC transporter NRL03_15900 PF09383 NIL domain NRL03_15905 PF03180 NLPA lipoprotein NRL03_15910 PF03171 2OG-Fe(II) oxygenase superfamily NRL03_15910 PF14226 non-haem dioxygenase in morphine synthesis N-terminal NRL03_15920 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NRL03_15920 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRL03_15930 PF17152 Periplasmic sensor domain NRL03_15930 PF00990 Diguanylate cyclase, GGDEF domain NRL03_15940 PF00990 Diguanylate cyclase, GGDEF domain NRL03_15945 PF13419 Haloacid dehalogenase-like hydrolase NRL03_15955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_15955 PF03466 LysR substrate binding domain NRL03_15960 PF00313 'Cold-shock' DNA-binding domain NRL03_15965 PF00857 Isochorismatase family NRL03_15970 PF01494 FAD binding domain NRL03_15975 PF01938 TRAM domain NRL03_15975 PF00919 Uncharacterized protein family UPF0004 NRL03_15975 PF04055 Radical SAM superfamily NRL03_15980 PF02562 PhoH-like protein NRL03_15985 PF02130 Uncharacterized protein family UPF0054 NRL03_15990 PF00571 CBS domain NRL03_15990 PF03471 Transporter associated domain NRL03_15995 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_15995 PF01610 Transposase NRL03_15995 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_16000 PF00795 Carbon-nitrogen hydrolase NRL03_16005 PF07295 Zinc-ribbon containing domain NRL03_16010 PF08264 Anticodon-binding domain of tRNA NRL03_16010 PF00133 tRNA synthetases class I (I, L, M and V) NRL03_16010 PF13603 Leucyl-tRNA synthetase, Domain 2 NRL03_16030 PF01467 Cytidylyltransferase-like NRL03_16040 PF02590 Predicted SPOUT methyltransferase NRL03_16045 PF00905 Penicillin binding protein transpeptidase domain NRL03_16045 PF03717 Penicillin-binding Protein dimerisation domain NRL03_16050 PF01098 Cell cycle protein NRL03_16055 PF13406 Transglycosylase SLT domain NRL03_16060 PF03330 Lytic transglycolase NRL03_16060 PF05036 Sporulation related domain NRL03_16065 PF07943 Penicillin-binding protein 5, C-terminal domain NRL03_16065 PF00768 D-alanyl-D-alanine carboxypeptidase NRL03_16070 PF04359 Protein of unknown function (DUF493) NRL03_16075 PF03099 Biotin/lipoate A/B protein ligase family NRL03_16080 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family NRL03_16080 PF04055 Radical SAM superfamily NRL03_16090 PF02508 Rnf-Nqr subunit, membrane protein NRL03_16105 PF13411 MerR HTH family regulatory protein NRL03_16110 PF01368 DHH family NRL03_16110 PF02272 DHHA1 domain NRL03_16110 PF17768 RecJ OB domain NRL03_16120 PF01741 Large-conductance mechanosensitive channel, MscL NRL03_16125 PF00589 Phage integrase family NRL03_16125 PF02899 Phage integrase, N-terminal SAM-like domain NRL03_16130 PF00258 Flavodoxin NRL03_16135 PF01523 Putative modulator of DNA gyrase NRL03_16145 PF01523 Putative modulator of DNA gyrase NRL03_16160 PF17969 L,D-transpeptidase C-terminal domain NRL03_16160 PF03734 L,D-transpeptidase catalytic domain NRL03_16165 PF01136 Peptidase family U32 NRL03_16165 PF16325 Peptidase family U32 C-terminal domain NRL03_16170 PF12838 4Fe-4S dicluster domain NRL03_16175 PF06476 Protein of unknown function (DUF1090) NRL03_16180 PF02635 DsrE/DsrF-like family NRL03_16185 PF07690 Major Facilitator Superfamily NRL03_16190 PF00575 S1 RNA binding domain NRL03_16190 PF01138 3' exoribonuclease family, domain 1 NRL03_16190 PF03725 3' exoribonuclease family, domain 2 NRL03_16190 PF00013 KH domain NRL03_16190 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NRL03_16195 PF00312 Ribosomal protein S15 NRL03_16200 PF09157 Pseudouridine synthase II TruB, C-terminal NRL03_16200 PF16198 tRNA pseudouridylate synthase B C-terminal domain NRL03_16200 PF01509 TruB family pseudouridylate synthase (N terminal domain) NRL03_16205 PF02033 Ribosome-binding factor A NRL03_16210 PF00009 Elongation factor Tu GTP binding domain NRL03_16210 PF11987 Translation-initiation factor 2 NRL03_16210 PF08364 Bacterial translation initiation factor IF-2 associated region NRL03_16210 PF04760 Translation initiation factor IF-2, N-terminal region NRL03_16215 PF13184 NusA-like KH domain NRL03_16215 PF08529 NusA N-terminal domain NRL03_16215 PF00575 S1 RNA binding domain NRL03_16220 PF17384 RimP C-terminal SH3 domain NRL03_16220 PF02576 RimP N-terminal domain NRL03_16235 PF03840 Preprotein translocase SecG subunit NRL03_16240 PF00121 Triosephosphate isomerase NRL03_16245 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NRL03_16245 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NRL03_16245 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NRL03_16245 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NRL03_16250 PF00809 Pterin binding enzyme NRL03_16255 PF00004 ATPase family associated with various cellular activities (AAA) NRL03_16255 PF17862 AAA+ lid domain NRL03_16255 PF06480 FtsH Extracellular NRL03_16255 PF01434 Peptidase family M41 NRL03_16260 PF01728 FtsJ-like methyltransferase NRL03_16265 PF01985 CRS1 / YhbY (CRM) domain NRL03_16275 PF01272 Transcription elongation factor, GreA/GreB, C-term NRL03_16275 PF03449 Transcription elongation factor, N-terminal NRL03_16280 PF13677 Membrane MotB of proton-channel complex MotA/MotB NRL03_16280 PF00691 OmpA family NRL03_16290 PF02609 Exonuclease VII small subunit NRL03_16295 PF00348 Polyprenyl synthetase NRL03_16300 PF02779 Transketolase, pyrimidine binding domain NRL03_16300 PF02780 Transketolase, C-terminal domain NRL03_16300 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NRL03_16305 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_16305 PF12911 N-terminal TM domain of oligopeptide transport permease C NRL03_16310 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_16315 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRL03_16320 PF00005 ABC transporter NRL03_16320 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRL03_16325 PF04608 Phosphatidylglycerophosphatase A NRL03_16330 PF00586 AIR synthase related protein, N-terminal domain NRL03_16330 PF02769 AIR synthase related protein, C-terminal domain NRL03_16335 PF01029 NusB family NRL03_16340 PF00885 6,7-dimethyl-8-ribityllumazine synthase NRL03_16345 PF00925 GTP cyclohydrolase II NRL03_16345 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NRL03_16350 PF00677 Lumazine binding domain NRL03_16355 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NRL03_16355 PF01872 RibD C-terminal domain NRL03_16360 PF03477 ATP cone domain NRL03_16370 PF00464 Serine hydroxymethyltransferase NRL03_16380 PF02613 Nitrate reductase delta subunit NRL03_16390 PF00563 EAL domain NRL03_16390 PF03707 Bacterial signalling protein N terminal repeat NRL03_16390 PF00990 Diguanylate cyclase, GGDEF domain NRL03_16395 PF16177 Acetyl-coenzyme A synthetase N-terminus NRL03_16395 PF00501 AMP-binding enzyme NRL03_16395 PF13193 AMP-binding enzyme C-terminal domain NRL03_16400 PF01220 Dehydroquinase class II NRL03_16405 PF00364 Biotin-requiring enzyme NRL03_16410 PF02785 Biotin carboxylase C-terminal domain NRL03_16410 PF00289 Biotin carboxylase, N-terminal domain NRL03_16410 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NRL03_16415 PF06196 Protein of unknown function (DUF997) NRL03_16420 PF00474 Sodium:solute symporter family NRL03_16425 PF00367 phosphotransferase system, EIIB NRL03_16425 PF02378 Phosphotransferase system, EIIC NRL03_16425 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NRL03_16430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_16430 PF03466 LysR substrate binding domain NRL03_16435 PF08240 Alcohol dehydrogenase GroES-like domain NRL03_16435 PF00107 Zinc-binding dehydrogenase NRL03_16445 PF00132 Bacterial transferase hexapeptide (six repeats) NRL03_16445 PF12464 Maltose acetyltransferase NRL03_16460 PF00881 Nitroreductase family NRL03_16465 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NRL03_16465 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL03_16470 PF01343 Peptidase family S49 NRL03_16485 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NRL03_16485 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NRL03_16490 PF07023 Protein of unknown function (DUF1315) NRL03_16495 PF00710 Asparaginase, N-terminal NRL03_16495 PF17763 Glutaminase/Asparaginase C-terminal domain NRL03_16500 PF03616 Sodium/glutamate symporter NRL03_16505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL03_16505 PF00672 HAMP domain NRL03_16505 PF02743 Cache domain NRL03_16515 PF00152 tRNA synthetases class II (D, K and N) NRL03_16515 PF01336 OB-fold nucleic acid binding domain NRL03_16520 PF02567 Phenazine biosynthesis-like protein NRL03_16525 PF00258 Flavodoxin NRL03_16525 PF00175 Oxidoreductase NAD-binding domain NRL03_16525 PF00667 FAD binding domain NRL03_16530 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NRL03_16530 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NRL03_16535 PF01507 Phosphoadenosine phosphosulfate reductase family NRL03_16540 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NRL03_16545 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_16550 PF00005 ABC transporter NRL03_16550 PF00571 CBS domain NRL03_16555 PF00186 Dihydrofolate reductase NRL03_16560 PF12821 Threonine/Serine exporter, ThrE NRL03_16565 PF06738 Putative threonine/serine exporter NRL03_16575 PF00994 Probable molybdopterin binding domain NRL03_16590 PF00194 Eukaryotic-type carbonic anhydrase NRL03_16595 PF04227 Indigoidine synthase A like protein NRL03_16600 PF00294 pfkB family carbohydrate kinase NRL03_16605 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NRL03_16605 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NRL03_16605 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL03_16605 PF04324 BFD-like [2Fe-2S] binding domain NRL03_16605 PF13806 Rieske-like [2Fe-2S] domain NRL03_16605 PF18267 Rubredoxin NAD+ reductase C-terminal domain NRL03_16610 PF04324 BFD-like [2Fe-2S] binding domain NRL03_16610 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NRL03_16610 PF13806 Rieske-like [2Fe-2S] domain NRL03_16610 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL03_16610 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NRL03_16610 PF18267 Rubredoxin NAD+ reductase C-terminal domain NRL03_16615 PF00005 ABC transporter NRL03_16620 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_16625 PF00005 ABC transporter NRL03_16635 PF10414 Sirohaem synthase dimerisation region NRL03_16635 PF14824 Sirohaem biosynthesis protein central NRL03_16635 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NRL03_16640 PF04324 BFD-like [2Fe-2S] binding domain NRL03_16640 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NRL03_16640 PF00384 Molybdopterin oxidoreductase NRL03_16640 PF01568 Molydopterin dinucleotide binding domain NRL03_16655 PF00582 Universal stress protein family NRL03_16665 PF00171 Aldehyde dehydrogenase family NRL03_16670 PF00696 Amino acid kinase family NRL03_16670 PF01472 PUA domain NRL03_16675 PF07417 Sigma factor-binding transcriptional regulator Crl NRL03_16680 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) NRL03_16685 PF00156 Phosphoribosyl transferase domain NRL03_16690 PF07687 Peptidase dimerisation domain NRL03_16690 PF01546 Peptidase family M20/M25/M40 NRL03_16695 PF00005 ABC transporter NRL03_16695 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRL03_16700 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRL03_16700 PF00005 ABC transporter NRL03_16705 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRL03_16710 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_16710 PF12911 N-terminal TM domain of oligopeptide transport permease C NRL03_16715 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_16720 PF07715 TonB-dependent Receptor Plug Domain NRL03_16720 PF00593 TonB dependent receptor NRL03_16730 PF01618 MotA/TolQ/ExbB proton channel family NRL03_16735 PF01618 MotA/TolQ/ExbB proton channel family NRL03_16740 PF02472 Biopolymer transport protein ExbD/TolR NRL03_16755 PF06483 Chitinase C NRL03_16755 PF00704 Glycosyl hydrolases family 18 NRL03_16790 PF00749 tRNA synthetases class I (E and Q), catalytic domain NRL03_16795 PF00749 tRNA synthetases class I (E and Q), catalytic domain NRL03_16800 PF00749 tRNA synthetases class I (E and Q), catalytic domain NRL03_16805 PF00672 HAMP domain NRL03_16805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL03_16815 PF00313 'Cold-shock' DNA-binding domain NRL03_16855 PF00929 Exonuclease NRL03_16860 PF03193 RsgA GTPase NRL03_16865 PF02666 Phosphatidylserine decarboxylase NRL03_16870 PF09905 DNA-binding protein VF530 NRL03_16900 PF06877 Regulator of ribonuclease activity B NRL03_16920 PF00561 alpha/beta hydrolase fold NRL03_16925 PF00005 ABC transporter NRL03_16925 PF00664 ABC transporter transmembrane region NRL03_16930 PF06004 Bacterial protein of unknown function (DUF903) NRL03_16935 PF00581 Rhodanese-like domain NRL03_16940 PF04960 Glutaminase NRL03_16945 PF04320 Protein with unknown function (DUF469) NRL03_16950 PF02390 Putative methyltransferase NRL03_16955 PF01483 Proprotein convertase P-domain NRL03_16955 PF04389 Peptidase family M28 NRL03_16960 PF00155 Aminotransferase class I and II NRL03_16965 PF12792 CSS motif domain associated with EAL NRL03_16965 PF00563 EAL domain NRL03_16970 PF01370 NAD dependent epimerase/dehydratase family NRL03_16970 PF08338 Domain of unknown function (DUF1731) NRL03_16980 PF00005 ABC transporter NRL03_16985 PF13472 GDSL-like Lipase/Acylhydrolase family NRL03_16990 PF00072 Response regulator receiver domain NRL03_16990 PF01584 CheW-like domain NRL03_16995 PF00267 Gram-negative porin NRL03_17000 PF00571 CBS domain NRL03_17000 PF00478 IMP dehydrogenase / GMP reductase domain NRL03_17005 PF00005 ABC transporter NRL03_17005 PF12848 ABC transporter NRL03_17015 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ NRL03_17020 PF03466 LysR substrate binding domain NRL03_17020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_17025 PF02525 Flavodoxin-like fold NRL03_17040 PF05598 Transposase domain (DUF772) NRL03_17040 PF01609 Transposase DDE domain NRL03_17045 PF13411 MerR HTH family regulatory protein NRL03_17055 PF00474 Sodium:solute symporter family NRL03_17060 PF03734 L,D-transpeptidase catalytic domain NRL03_17060 PF17969 L,D-transpeptidase C-terminal domain NRL03_17065 PF00924 Mechanosensitive ion channel NRL03_17070 PF00871 Acetokinase family NRL03_17075 PF04074 YhcH/YjgK/YiaL NRL03_17085 PF13302 Acetyltransferase (GNAT) domain NRL03_17090 PF13302 Acetyltransferase (GNAT) domain NRL03_17095 PF07504 Fungalysin/Thermolysin Propeptide Motif NRL03_17095 PF03413 Peptidase propeptide and YPEB domain NRL03_17095 PF01447 Thermolysin metallopeptidase, catalytic domain NRL03_17095 PF02868 Thermolysin metallopeptidase, alpha-helical domain NRL03_17095 PF04151 Bacterial pre-peptidase C-terminal domain NRL03_17100 PF03466 LysR substrate binding domain NRL03_17100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_17105 PF07690 Major Facilitator Superfamily NRL03_17125 PF06826 Predicted Permease Membrane Region NRL03_17125 PF02080 TrkA-C domain NRL03_17130 PF03006 Haemolysin-III related NRL03_17135 PF00282 Pyridoxal-dependent decarboxylase conserved domain NRL03_17140 PF04279 Intracellular septation protein A NRL03_17145 PF03795 YCII-related domain NRL03_17150 PF13006 Insertion element 4 transposase N-terminal NRL03_17150 PF01609 Transposase DDE domain NRL03_17155 PF00459 Inositol monophosphatase family NRL03_17165 PF00483 Nucleotidyl transferase NRL03_17170 PF00854 POT family NRL03_17175 PF00072 Response regulator receiver domain NRL03_17210 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRL03_17220 PF01207 Dihydrouridine synthase (Dus) NRL03_17225 PF02954 Bacterial regulatory protein, Fis family NRL03_17230 PF01810 LysE type translocator NRL03_17255 PF03060 Nitronate monooxygenase NRL03_17260 PF00445 Ribonuclease T2 family NRL03_17280 PF00512 His Kinase A (phospho-acceptor) domain NRL03_17280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_17280 PF00672 HAMP domain NRL03_17280 PF16527 Two-component sensor protein CpxA, periplasmic domain NRL03_17285 PF00072 Response regulator receiver domain NRL03_17285 PF00486 Transcriptional regulatory protein, C terminal NRL03_17290 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRL03_17295 PF02687 FtsX-like permease family NRL03_17295 PF00005 ABC transporter NRL03_17295 PF12704 MacB-like periplasmic core domain NRL03_17305 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase NRL03_17325 PF03783 Curli production assembly/transport component CsgG NRL03_17335 PF05643 Putative bacterial lipoprotein (DUF799) NRL03_17340 PF00990 Diguanylate cyclase, GGDEF domain NRL03_17345 PF00271 Helicase conserved C-terminal domain NRL03_17345 PF00270 DEAD/DEAH box helicase NRL03_17350 PF00970 Oxidoreductase FAD-binding domain NRL03_17350 PF00111 2Fe-2S iron-sulfur cluster binding domain NRL03_17350 PF00175 Oxidoreductase NAD-binding domain NRL03_17370 PF00753 Metallo-beta-lactamase superfamily NRL03_17375 PF01609 Transposase DDE domain NRL03_17380 PF01609 Transposase DDE domain NRL03_17380 PF05598 Transposase domain (DUF772) NRL03_17420 PF01425 Amidase NRL03_17425 PF04371 Porphyromonas-type peptidyl-arginine deiminase NRL03_17430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_17430 PF03466 LysR substrate binding domain NRL03_17440 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NRL03_17445 PF00583 Acetyltransferase (GNAT) family NRL03_17450 PF01758 Sodium Bile acid symporter family NRL03_17460 PF03144 Elongation factor Tu domain 2 NRL03_17460 PF16658 Class II release factor RF3, C-terminal domain NRL03_17460 PF00009 Elongation factor Tu GTP binding domain NRL03_17465 PF00990 Diguanylate cyclase, GGDEF domain NRL03_17465 PF00072 Response regulator receiver domain NRL03_17470 PF00563 EAL domain NRL03_17470 PF00990 Diguanylate cyclase, GGDEF domain NRL03_17470 PF08448 PAS fold NRL03_17475 PF05762 VWA domain containing CoxE-like protein NRL03_17480 PF17868 AAA lid domain NRL03_17480 PF12592 Protein of unknown function (DUF3763) NRL03_17480 PF07728 AAA domain (dynein-related subfamily) NRL03_17490 PF01609 Transposase DDE domain NRL03_17490 PF13808 DDE_Tnp_1-associated NRL03_17495 PF00583 Acetyltransferase (GNAT) family NRL03_17505 PF00501 AMP-binding enzyme NRL03_17515 PF01177 Asp/Glu/Hydantoin racemase NRL03_17530 PF00392 Bacterial regulatory proteins, gntR family NRL03_17530 PF00155 Aminotransferase class I and II NRL03_17545 PF00209 Sodium:neurotransmitter symporter family NRL03_17550 PF01610 Transposase NRL03_17550 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_17550 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_17555 PF00209 Sodium:neurotransmitter symporter family NRL03_17575 PF07690 Major Facilitator Superfamily NRL03_17585 PF01037 Lrp/AsnC ligand binding domain NRL03_17600 PF01047 MarR family NRL03_17605 PF00107 Zinc-binding dehydrogenase NRL03_17605 PF16884 N-terminal domain of oxidoreductase NRL03_17610 PF00293 NUDIX domain NRL03_17625 PF01641 SelR domain NRL03_17630 PF00128 Alpha amylase, catalytic domain NRL03_17630 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NRL03_17635 PF00128 Alpha amylase, catalytic domain NRL03_17635 PF02806 Alpha amylase, C-terminal all-beta domain NRL03_17635 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NRL03_17640 PF02446 4-alpha-glucanotransferase NRL03_17645 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NRL03_17645 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NRL03_17650 PF01263 Aldose 1-epimerase NRL03_17655 PF02445 Quinolinate synthetase A protein NRL03_17660 PF00672 HAMP domain NRL03_17660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL03_17735 PF16331 TolA binding protein trimerisation NRL03_17735 PF13174 Tetratricopeptide repeat NRL03_17740 PF00691 OmpA family NRL03_17745 PF07676 WD40-like Beta Propeller Repeat NRL03_17745 PF04052 TolB amino-terminal domain NRL03_17755 PF02472 Biopolymer transport protein ExbD/TolR NRL03_17760 PF01618 MotA/TolQ/ExbB proton channel family NRL03_17765 PF03061 Thioesterase superfamily NRL03_17770 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) NRL03_17775 PF08173 Membrane bound YbgT-like protein NRL03_17780 PF02322 Cytochrome bd terminal oxidase subunit II NRL03_17785 PF01654 Cytochrome bd terminal oxidase subunit I NRL03_17795 PF17864 RuvB AAA lid domain NRL03_17795 PF05491 RuvB C-terminal winged helix domain NRL03_17795 PF05496 Holliday junction DNA helicase RuvB P-loop domain NRL03_17800 PF01330 RuvA N terminal domain NRL03_17800 PF07499 RuvA, C-terminal domain NRL03_17805 PF12729 Four helix bundle sensory module for signal transduction NRL03_17805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL03_17805 PF00672 HAMP domain NRL03_17810 PF03129 Anticodon binding domain NRL03_17810 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NRL03_17810 PF04073 Aminoacyl-tRNA editing domain NRL03_17815 PF00929 Exonuclease NRL03_17820 PF00106 short chain dehydrogenase NRL03_17835 PF00378 Enoyl-CoA hydratase/isomerase NRL03_17840 PF10952 Protein of unknown function (DUF2753) NRL03_17845 PF00132 Bacterial transferase hexapeptide (six repeats) NRL03_17855 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRL03_17865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL03_17865 PF08447 PAS fold NRL03_17870 PF00270 DEAD/DEAH box helicase NRL03_17870 PF00271 Helicase conserved C-terminal domain NRL03_17875 PF08534 Redoxin NRL03_17880 PF00403 Heavy-metal-associated domain NRL03_17885 PF11852 Domain of unknown function (DUF3372) NRL03_17885 PF03714 Bacterial pullanase-associated domain NRL03_17885 PF18494 Pullulanase Ins domain NRL03_17885 PF17967 Pullulanase N2 domain NRL03_17885 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NRL03_17900 PF02583 Metal-sensitive transcriptional repressor NRL03_17905 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) NRL03_17910 PF01270 Glycosyl hydrolases family 8 NRL03_17915 PF03170 Bacterial cellulose synthase subunit NRL03_17920 PF00535 Glycosyl transferase family 2 NRL03_17920 PF07238 PilZ domain NRL03_17925 PF03552 Cellulose synthase NRL03_17925 PF00535 Glycosyl transferase family 2 NRL03_17925 PF07238 PilZ domain NRL03_17930 PF06564 Cellulose biosynthesis protein BcsQ NRL03_17940 PF11658 Cellulose biosynthesis protein BcsG NRL03_17950 PF00155 Aminotransferase class I and II NRL03_17955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_17955 PF03466 LysR substrate binding domain NRL03_17965 PF04055 Radical SAM superfamily NRL03_17970 PF11230 Protein of unknown function (DUF3029) NRL03_17985 PF00175 Oxidoreductase NAD-binding domain NRL03_17985 PF00111 2Fe-2S iron-sulfur cluster binding domain NRL03_17985 PF00970 Oxidoreductase FAD-binding domain NRL03_18000 PF00672 HAMP domain NRL03_18000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL03_18000 PF17200 Single Cache domain 2 NRL03_18005 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading NRL03_18005 PF18416 N-acetylglucosamine binding protein domain 2 NRL03_18010 PF03466 LysR substrate binding domain NRL03_18010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_18015 PF00005 ABC transporter NRL03_18015 PF12857 TOBE-like domain NRL03_18020 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_18025 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_18070 PF18337 RapA N-terminal Tudor like domain NRL03_18070 PF12137 RNA polymerase recycling family C-terminal NRL03_18070 PF00176 SNF2 family N-terminal domain NRL03_18070 PF00271 Helicase conserved C-terminal domain NRL03_18070 PF18339 RapA N-terminal Tudor like domain 1 NRL03_18075 PF00849 RNA pseudouridylate synthase NRL03_18085 PF00563 EAL domain NRL03_18085 PF00990 Diguanylate cyclase, GGDEF domain NRL03_18085 PF03707 Bacterial signalling protein N terminal repeat NRL03_18095 PF00118 TCP-1/cpn60 chaperonin family NRL03_18100 PF00166 Chaperonin 10 Kd subunit NRL03_18105 PF01554 MatE NRL03_18110 PF04186 FxsA cytoplasmic membrane protein NRL03_18115 PF00206 Lyase NRL03_18115 PF10415 Fumarase C C-terminus NRL03_18120 PF03605 Anaerobic c4-dicarboxylate membrane transporter NRL03_18125 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_18125 PF01610 Transposase NRL03_18125 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_18130 PF04262 Glutamate-cysteine ligase NRL03_18135 PF05193 Peptidase M16 inactive domain NRL03_18135 PF00675 Insulinase (Peptidase family M16) NRL03_18140 PF09335 SNARE associated Golgi protein NRL03_18145 PF08240 Alcohol dehydrogenase GroES-like domain NRL03_18145 PF14765 Polyketide synthase dehydratase NRL03_18145 PF00550 Phosphopantetheine attachment site NRL03_18145 PF00698 Acyl transferase domain NRL03_18145 PF02801 Beta-ketoacyl synthase, C-terminal domain NRL03_18145 PF00109 Beta-ketoacyl synthase, N-terminal domain NRL03_18145 PF08990 Erythronolide synthase docking NRL03_18145 PF16197 Ketoacyl-synthetase C-terminal extension NRL03_18145 PF08659 KR domain NRL03_18155 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRL03_18175 PF00970 Oxidoreductase FAD-binding domain NRL03_18175 PF00175 Oxidoreductase NAD-binding domain NRL03_18180 PF03948 Ribosomal protein L9, C-terminal domain NRL03_18180 PF01281 Ribosomal protein L9, N-terminal domain NRL03_18185 PF01084 Ribosomal protein S18 NRL03_18190 PF01250 Ribosomal protein S6 NRL03_18195 PF01566 Natural resistance-associated macrophage protein NRL03_18200 PF02272 DHHA1 domain NRL03_18200 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NRL03_18200 PF01411 tRNA synthetases class II (A) NRL03_18205 PF13673 Acetyltransferase (GNAT) domain NRL03_18215 PF00588 SpoU rRNA Methylase family NRL03_18215 PF08032 RNA 2'-O ribose methyltransferase substrate binding NRL03_18220 PF17876 Cold shock domain NRL03_18220 PF08461 Ribonuclease R winged-helix domain NRL03_18220 PF08206 Ribonuclease B OB domain NRL03_18220 PF00773 RNB domain NRL03_18220 PF00575 S1 RNA binding domain NRL03_18225 PF00990 Diguanylate cyclase, GGDEF domain NRL03_18230 PF02664 S-Ribosylhomocysteinase (LuxS) NRL03_18240 PF00543 Nitrogen regulatory protein P-II NRL03_18245 PF00795 Carbon-nitrogen hydrolase NRL03_18245 PF02540 NAD synthase NRL03_18275 PF02401 LytB protein NRL03_18280 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRL03_18285 PF01252 Signal peptidase (SPase) II NRL03_18290 PF08264 Anticodon-binding domain of tRNA NRL03_18290 PF00133 tRNA synthetases class I (I, L, M and V) NRL03_18290 PF06827 Zinc finger found in FPG and IleRS NRL03_18295 PF06574 FAD synthetase NRL03_18295 PF01687 Riboflavin kinase NRL03_18300 PF03023 Lipid II flippase MurJ NRL03_18305 PF01649 Ribosomal protein S20 NRL03_18310 PF01022 Bacterial regulatory protein, arsR family NRL03_18315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_18315 PF03466 LysR substrate binding domain NRL03_18325 PF06965 Na+/H+ antiporter 1 NRL03_18330 PF00303 Thymidylate synthase NRL03_18335 PF01790 Prolipoprotein diacylglyceryl transferase NRL03_18340 PF01590 GAF domain NRL03_18340 PF05524 PEP-utilising enzyme, N-terminal NRL03_18340 PF00391 PEP-utilising enzyme, mobile domain NRL03_18340 PF02896 PEP-utilising enzyme, TIM barrel domain NRL03_18345 PF00293 NUDIX domain NRL03_18350 PF02976 DNA mismatch repair enzyme MutH NRL03_18360 PF01245 Ribosomal protein L19 NRL03_18365 PF01746 tRNA (Guanine-1)-methyltransferase NRL03_18370 PF05239 PRC-barrel domain NRL03_18370 PF01782 RimM N-terminal domain NRL03_18375 PF00886 Ribosomal protein S16 NRL03_18380 PF00448 SRP54-type protein, GTPase domain NRL03_18380 PF02881 SRP54-type protein, helical bundle domain NRL03_18380 PF02978 Signal peptide binding domain NRL03_18385 PF01578 Cytochrome C assembly protein NRL03_18390 PF00571 CBS domain NRL03_18390 PF03471 Transporter associated domain NRL03_18390 PF01595 Cyclin M transmembrane N-terminal domain NRL03_18395 PF02082 Transcriptional regulator NRL03_18400 PF00175 Oxidoreductase NAD-binding domain NRL03_18400 PF00970 Oxidoreductase FAD-binding domain NRL03_18400 PF00042 Globin NRL03_18405 PF08238 Sel1 repeat NRL03_18410 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NRL03_18410 PF00056 lactate/malate dehydrogenase, NAD binding domain NRL03_18415 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_18420 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_18425 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL03_18430 PF00005 ABC transporter NRL03_18435 PF01316 Arginine repressor, DNA binding domain NRL03_18435 PF02863 Arginine repressor, C-terminal domain NRL03_18440 PF04261 Dyp-type peroxidase family NRL03_18445 PF08402 TOBE domain NRL03_18445 PF00005 ABC transporter NRL03_18460 PF00543 Nitrogen regulatory protein P-II NRL03_18465 PF00472 RF-1 domain NRL03_18470 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NRL03_18470 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NRL03_18475 PF01773 Na+ dependent nucleoside transporter N-terminus NRL03_18475 PF07662 Na+ dependent nucleoside transporter C-terminus NRL03_18475 PF07670 Nucleoside recognition NRL03_18480 PF03466 LysR substrate binding domain NRL03_18480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_18485 PF00255 Glutathione peroxidase NRL03_18495 PF02595 Glycerate kinase family NRL03_18500 PF02447 GntP family permease NRL03_18505 PF13556 PucR C-terminal helix-turn-helix domain NRL03_18505 PF05651 Putative sugar diacid recognition NRL03_18505 PF17853 GGDEF-like domain NRL03_18510 PF06062 Uncharacterised protein family (UPF0231) NRL03_18530 PF02594 Uncharacterised ACR, YggU family COG1872 NRL03_18535 PF02325 YGGT family NRL03_18540 PF03807 NADP oxidoreductase coenzyme F420-dependent NRL03_18540 PF14748 Pyrroline-5-carboxylate reductase dimerisation NRL03_18545 PF01168 Alanine racemase, N-terminal domain NRL03_18550 PF00437 Type II/IV secretion system protein NRL03_18555 PF00437 Type II/IV secretion system protein NRL03_18560 PF03883 Peroxide stress protein YaaA NRL03_18565 PF00270 DEAD/DEAH box helicase NRL03_18565 PF00271 Helicase conserved C-terminal domain NRL03_18570 PF05175 Methyltransferase small domain NRL03_18575 PF05525 Branched-chain amino acid transport protein NRL03_18590 PF01475 Ferric uptake regulator family NRL03_18595 PF01207 Dihydrouridine synthase (Dus) NRL03_18605 PF01609 Transposase DDE domain NRL03_18605 PF13006 Insertion element 4 transposase N-terminal NRL03_18615 PF00216 Bacterial DNA-binding protein NRL03_18620 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ NRL03_18625 PF07238 PilZ domain NRL03_18630 PF18073 Rubredoxin metal binding domain NRL03_18645 PF18429 Domain of unknown function (DUF5609) NRL03_18655 PF08447 PAS fold NRL03_18655 PF08448 PAS fold NRL03_18655 PF13426 PAS domain NRL03_18655 PF00563 EAL domain NRL03_18655 PF05231 MASE1 NRL03_18655 PF00990 Diguanylate cyclase, GGDEF domain NRL03_18660 PF01048 Phosphorylase superfamily NRL03_18665 PF01676 Metalloenzyme superfamily NRL03_18670 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain NRL03_18670 PF02885 Glycosyl transferase family, helical bundle domain NRL03_18670 PF00591 Glycosyl transferase family, a/b domain NRL03_18675 PF01791 DeoC/LacD family aldolase NRL03_18685 PF01773 Na+ dependent nucleoside transporter N-terminus NRL03_18685 PF07662 Na+ dependent nucleoside transporter C-terminus NRL03_18685 PF07670 Nucleoside recognition NRL03_18690 PF01026 TatD related DNase NRL03_18695 PF07963 Prokaryotic N-terminal methylation motif NRL03_18710 PF05958 tRNA (Uracil-5-)-methyltransferase NRL03_18710 PF01938 TRAM domain NRL03_18715 PF00909 Ammonium Transporter Family NRL03_18735 PF03739 Lipopolysaccharide export system permease LptF/LptG NRL03_18740 PF03739 Lipopolysaccharide export system permease LptF/LptG NRL03_18745 PF02789 Cytosol aminopeptidase family, N-terminal domain NRL03_18745 PF00883 Cytosol aminopeptidase family, catalytic domain NRL03_18755 PF10458 Valyl tRNA synthetase tRNA binding arm NRL03_18755 PF00133 tRNA synthetases class I (I, L, M and V) NRL03_18755 PF08264 Anticodon-binding domain of tRNA NRL03_18760 PF00571 CBS domain NRL03_18760 PF03471 Transporter associated domain NRL03_18760 PF01595 Cyclin M transmembrane N-terminal domain NRL03_18765 PF09335 SNARE associated Golgi protein NRL03_18770 PF00768 D-alanyl-D-alanine carboxypeptidase NRL03_18775 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_18775 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_18775 PF01610 Transposase NRL03_18810 PF02599 Global regulator protein family NRL03_18815 PF00696 Amino acid kinase family NRL03_18815 PF01842 ACT domain NRL03_18815 PF13840 ACT domain NRL03_18820 PF01411 tRNA synthetases class II (A) NRL03_18820 PF02272 DHHA1 domain NRL03_18820 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NRL03_18825 PF02631 RecX family NRL03_18830 PF00154 recA bacterial DNA recombination protein NRL03_18835 PF02464 Competence-damaged protein NRL03_18845 PF05192 MutS domain III NRL03_18845 PF05190 MutS family domain IV NRL03_18845 PF01624 MutS domain I NRL03_18845 PF00488 MutS domain V NRL03_18845 PF05188 MutS domain II NRL03_18850 PF02028 BCCT, betaine/carnitine/choline family transporter NRL03_18895 PF02660 Glycerol-3-phosphate acyltransferase NRL03_18900 PF02152 Dihydroneopterin aldolase NRL03_18905 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NRL03_18915 PF13808 DDE_Tnp_1-associated NRL03_18915 PF01609 Transposase DDE domain NRL03_18920 PF07690 Major Facilitator Superfamily NRL03_18925 PF07683 Cobalamin synthesis protein cobW C-terminal domain NRL03_18925 PF02492 CobW/HypB/UreG, nucleotide-binding domain NRL03_18930 PF01565 FAD binding domain NRL03_18930 PF04030 D-arabinono-1,4-lactone oxidase NRL03_18935 PF01810 LysE type translocator NRL03_18940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_18940 PF03466 LysR substrate binding domain NRL03_18945 PF12792 CSS motif domain associated with EAL NRL03_18945 PF00563 EAL domain NRL03_18950 PF00330 Aconitase family (aconitate hydratase) NRL03_18950 PF11791 Aconitate B N-terminal domain NRL03_18950 PF06434 Aconitate hydratase 2 N-terminus NRL03_18955 PF01734 Patatin-like phospholipase NRL03_18960 PF12729 Four helix bundle sensory module for signal transduction NRL03_18960 PF00672 HAMP domain NRL03_18960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL03_18970 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NRL03_18970 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL03_18975 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NRL03_18975 PF00364 Biotin-requiring enzyme NRL03_18975 PF02817 e3 binding domain NRL03_18980 PF00456 Transketolase, thiamine diphosphate binding domain NRL03_18980 PF17831 Pyruvate dehydrogenase E1 component middle domain NRL03_18985 PF07729 FCD domain NRL03_18985 PF00392 Bacterial regulatory proteins, gntR family NRL03_18990 PF01510 N-acetylmuramoyl-L-alanine amidase NRL03_19000 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NRL03_19000 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NRL03_19005 PF07963 Prokaryotic N-terminal methylation motif NRL03_19010 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NRL03_19010 PF00437 Type II/IV secretion system protein NRL03_19015 PF00482 Type II secretion system (T2SS), protein F NRL03_19020 PF06750 Bacterial Peptidase A24 N-terminal domain NRL03_19020 PF01478 Type IV leader peptidase family NRL03_19025 PF01121 Dephospho-CoA kinase NRL03_19030 PF07072 Cell division protein NRL03_19035 PF03884 DNA gyrase inhibitor YacG NRL03_19040 PF00293 NUDIX domain NRL03_19055 PF02810 SEC-C motif NRL03_19055 PF07517 SecA DEAD-like domain NRL03_19055 PF01043 SecA preprotein cross-linking domain NRL03_19055 PF07516 SecA Wing and Scaffold domain NRL03_19065 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase NRL03_19070 PF12327 FtsZ family, C-terminal domain NRL03_19070 PF00091 Tubulin/FtsZ family, GTPase domain NRL03_19075 PF02491 SHS2 domain inserted in FTSA NRL03_19080 PF08478 POTRA domain, FtsQ-type NRL03_19080 PF03799 Cell division protein FtsQ NRL03_19085 PF08245 Mur ligase middle domain NRL03_19085 PF02875 Mur ligase family, glutamate ligase domain NRL03_19085 PF01225 Mur ligase family, catalytic domain NRL03_19090 PF03033 Glycosyltransferase family 28 N-terminal domain NRL03_19090 PF04101 Glycosyltransferase family 28 C-terminal domain NRL03_19095 PF01098 Cell cycle protein NRL03_19100 PF08245 Mur ligase middle domain NRL03_19100 PF02875 Mur ligase family, glutamate ligase domain NRL03_19105 PF00953 Glycosyl transferase family 4 NRL03_19105 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 NRL03_19110 PF01225 Mur ligase family, catalytic domain NRL03_19110 PF02875 Mur ligase family, glutamate ligase domain NRL03_19110 PF08245 Mur ligase middle domain NRL03_19115 PF01225 Mur ligase family, catalytic domain NRL03_19115 PF02875 Mur ligase family, glutamate ligase domain NRL03_19115 PF08245 Mur ligase middle domain NRL03_19120 PF03717 Penicillin-binding Protein dimerisation domain NRL03_19120 PF00905 Penicillin binding protein transpeptidase domain NRL03_19125 PF04999 Cell division protein FtsL NRL03_19130 PF01795 MraW methylase family NRL03_19135 PF02381 MraZ protein, putative antitoxin-like NRL03_19150 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NRL03_19155 PF04348 LppC putative lipoprotein NRL03_19160 PF02021 Uncharacterised protein family UPF0102 NRL03_19165 PF13580 SIS domain NRL03_19170 PF04972 BON domain NRL03_19175 PF04386 Stringent starvation protein B NRL03_19180 PF00043 Glutathione S-transferase, C-terminal domain NRL03_19180 PF02798 Glutathione S-transferase, N-terminal domain NRL03_19185 PF02167 Cytochrome C1 family NRL03_19190 PF00032 Cytochrome b(C-terminal)/b6/petD NRL03_19190 PF00033 Cytochrome b/b6/petB NRL03_19195 PF00355 Rieske [2Fe-2S] domain NRL03_19195 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal NRL03_19200 PF00380 Ribosomal protein S9/S16 NRL03_19205 PF00572 Ribosomal protein L13 NRL03_19210 PF03969 AFG1-like ATPase NRL03_19220 PF00595 PDZ domain NRL03_19220 PF13180 PDZ domain NRL03_19225 PF13180 PDZ domain NRL03_19255 PF01979 Amidohydrolase family NRL03_19260 PF03841 L-seryl-tRNA selenium transferase NRL03_19265 PF07071 KDGP aldolase NRL03_19270 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRL03_19270 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NRL03_19270 PF02378 Phosphotransferase system, EIIC NRL03_19275 PF00381 PTS HPr component phosphorylation site NRL03_19280 PF03668 P-loop ATPase protein family NRL03_19285 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRL03_19290 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NRL03_19295 PF00309 Sigma-54 factor, Activator interacting domain (AID) NRL03_19295 PF04963 Sigma-54 factor, core binding domain NRL03_19295 PF04552 Sigma-54, DNA binding domain NRL03_19300 PF00005 ABC transporter NRL03_19300 PF12399 Branched-chain amino acid ATP-binding cassette transporter NRL03_19305 PF03968 OstA-like protein NRL03_19320 PF01380 SIS domain NRL03_19320 PF00571 CBS domain NRL03_19325 PF00005 ABC transporter NRL03_19330 PF02405 Permease MlaE NRL03_19335 PF02470 MlaD protein NRL03_19340 PF05494 MlaC protein NRL03_19350 PF01722 BolA-like protein NRL03_19355 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NRL03_19360 PF03692 Putative zinc- or iron-chelating domain NRL03_19365 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded NRL03_19380 PF07715 TonB-dependent Receptor Plug Domain NRL03_19380 PF00593 TonB dependent receptor NRL03_19395 PF01638 HxlR-like helix-turn-helix NRL03_19400 PF08803 Putative mono-oxygenase ydhR NRL03_19415 PF06055 Exopolysaccharide synthesis, ExoD NRL03_19420 PF00990 Diguanylate cyclase, GGDEF domain NRL03_19425 PF13036 Peptidoglycan-synthase activator LpoB NRL03_19435 PF01609 Transposase DDE domain NRL03_19455 PF13356 Arm DNA-binding domain NRL03_19455 PF14659 Phage integrase, N-terminal SAM-like domain NRL03_19455 PF00589 Phage integrase family NRL03_19465 PF00999 Sodium/hydrogen exchanger family NRL03_19470 PF02607 B12 binding domain NRL03_19470 PF02310 B12 binding domain NRL03_19470 PF02965 Vitamin B12 dependent methionine synthase, activation domain NRL03_19470 PF00809 Pterin binding enzyme NRL03_19470 PF02574 Homocysteine S-methyltransferase NRL03_19480 PF08443 RimK-like ATP-grasp domain NRL03_19480 PF18030 RimK PreATP-grasp domain NRL03_19485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_19490 PF00486 Transcriptional regulatory protein, C terminal NRL03_19490 PF00072 Response regulator receiver domain NRL03_19505 PF13667 ThiC-associated domain NRL03_19505 PF01964 Radical SAM ThiC family NRL03_19510 PF02581 Thiamine monophosphate synthase NRL03_19515 PF00899 ThiF family NRL03_19525 PF05690 Thiazole biosynthesis protein ThiG NRL03_19530 PF04055 Radical SAM superfamily NRL03_19530 PF06968 Biotin and Thiamin Synthesis associated domain NRL03_19540 PF01609 Transposase DDE domain NRL03_19540 PF13808 DDE_Tnp_1-associated NRL03_19545 PF01609 Transposase DDE domain NRL03_19555 PF04471 Restriction endonuclease NRL03_19555 PF14338 Mrr N-terminal domain NRL03_19565 PF12161 HsdM N-terminal domain NRL03_19565 PF02384 N-6 DNA Methylase NRL03_19570 PF01420 Type I restriction modification DNA specificity domain NRL03_19590 PF04320 Protein with unknown function (DUF469) NRL03_19600 PF01695 IstB-like ATP binding protein NRL03_19605 PF00665 Integrase core domain NRL03_19620 PF04228 Putative neutral zinc metallopeptidase NRL03_19630 PF07690 Major Facilitator Superfamily NRL03_19635 PF01914 MarC family integral membrane protein NRL03_19645 PF01523 Putative modulator of DNA gyrase NRL03_19650 PF00795 Carbon-nitrogen hydrolase NRL03_19655 PF13502 AsmA-like C-terminal region NRL03_19655 PF13116 Protein of unknown function NRL03_19660 PF10150 Ribonuclease E/G family NRL03_19660 PF00575 S1 RNA binding domain NRL03_19665 PF02545 Maf-like protein NRL03_19670 PF04093 rod shape-determining protein MreD NRL03_19675 PF04085 rod shape-determining protein MreC NRL03_19720 PF12792 CSS motif domain associated with EAL NRL03_19720 PF00563 EAL domain NRL03_19725 PF01699 Sodium/calcium exchanger protein NRL03_19730 PF00221 Aromatic amino acid lyase NRL03_19735 PF01175 Urocanase Rossmann-like domain NRL03_19735 PF17392 Urocanase C-terminal domain NRL03_19735 PF17391 Urocanase N-terminal domain NRL03_19740 PF00491 Arginase family NRL03_19745 PF01979 Amidohydrolase family NRL03_19755 PF00392 Bacterial regulatory proteins, gntR family NRL03_19755 PF07702 UTRA domain NRL03_19760 PF00484 Carbonic anhydrase NRL03_19765 PF04545 Sigma-70, region 4 NRL03_19765 PF04542 Sigma-70 region 2 NRL03_19765 PF00140 Sigma-70 factor, region 1.2 NRL03_19770 PF01610 Transposase NRL03_19770 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_19770 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_19775 PF18075 FtsX extracellular domain NRL03_19780 PF00005 ABC transporter NRL03_19785 PF02881 SRP54-type protein, helical bundle domain NRL03_19785 PF00448 SRP54-type protein, GTPase domain NRL03_19800 PF07226 Protein of unknown function (DUF1422) NRL03_19805 PF00440 Bacterial regulatory proteins, tetR family NRL03_19815 PF13091 PLD-like domain NRL03_19825 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL03_19825 PF01464 Transglycosylase SLT domain NRL03_19835 PF02416 mttA/Hcf106 family NRL03_19840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_19840 PF03466 LysR substrate binding domain NRL03_19845 PF01914 MarC family integral membrane protein NRL03_19850 PF10678 Protein of unknown function (DUF2492) NRL03_19855 PF00375 Sodium:dicarboxylate symporter family NRL03_19865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_19865 PF03466 LysR substrate binding domain NRL03_19870 PF13533 Biotin-lipoyl like NRL03_19875 PF07690 Major Facilitator Superfamily NRL03_19880 PF07947 YhhN family NRL03_19895 PF16868 NMT1-like family NRL03_19900 PF00326 Prolyl oligopeptidase family NRL03_19900 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NRL03_19915 PF00106 short chain dehydrogenase NRL03_19920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_19920 PF03466 LysR substrate binding domain NRL03_19925 PF02525 Flavodoxin-like fold NRL03_19930 PF02254 TrkA-N domain NRL03_19930 PF00999 Sodium/hydrogen exchanger family NRL03_19945 PF01695 IstB-like ATP binding protein NRL03_19950 PF00665 Integrase core domain NRL03_19985 PF01196 Ribosomal protein L17 NRL03_19990 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NRL03_19990 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NRL03_19990 PF01000 RNA polymerase Rpb3/RpoA insert domain NRL03_19995 PF00163 Ribosomal protein S4/S9 N-terminal domain NRL03_19995 PF01479 S4 domain NRL03_20000 PF00411 Ribosomal protein S11 NRL03_20005 PF00416 Ribosomal protein S13/S18 NRL03_20010 PF00444 Ribosomal protein L36 NRL03_20015 PF00344 SecY translocase NRL03_20020 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NRL03_20025 PF00327 Ribosomal protein L30p/L7e NRL03_20030 PF00333 Ribosomal protein S5, N-terminal domain NRL03_20030 PF03719 Ribosomal protein S5, C-terminal domain NRL03_20035 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NRL03_20040 PF00347 Ribosomal protein L6 NRL03_20045 PF00410 Ribosomal protein S8 NRL03_20050 PF00253 Ribosomal protein S14p/S29e NRL03_20055 PF00281 Ribosomal protein L5 NRL03_20055 PF00673 ribosomal L5P family C-terminus NRL03_20060 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NRL03_20060 PF00467 KOW motif NRL03_20065 PF00238 Ribosomal protein L14p/L23e NRL03_20070 PF00366 Ribosomal protein S17 NRL03_20075 PF00831 Ribosomal L29 protein NRL03_20080 PF00252 Ribosomal protein L16p/L10e NRL03_20085 PF07650 KH domain NRL03_20085 PF00189 Ribosomal protein S3, C-terminal domain NRL03_20090 PF00237 Ribosomal protein L22p/L17e NRL03_20095 PF00203 Ribosomal protein S19 NRL03_20100 PF00181 Ribosomal Proteins L2, RNA binding domain NRL03_20100 PF03947 Ribosomal Proteins L2, C-terminal domain NRL03_20105 PF00276 Ribosomal protein L23 NRL03_20110 PF00573 Ribosomal protein L4/L1 family NRL03_20115 PF00297 Ribosomal protein L3 NRL03_20120 PF00338 Ribosomal protein S10p/S20e NRL03_20130 PF00512 His Kinase A (phospho-acceptor) domain NRL03_20130 PF00672 HAMP domain NRL03_20130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_20135 PF00072 Response regulator receiver domain NRL03_20135 PF00486 Transcriptional regulatory protein, C terminal NRL03_20140 PF01272 Transcription elongation factor, GreA/GreB, C-term NRL03_20140 PF03449 Transcription elongation factor, N-terminal NRL03_20145 PF17674 HHH domain NRL03_20145 PF00575 S1 RNA binding domain NRL03_20145 PF09371 Tex-like protein N-terminal domain NRL03_20145 PF16921 Tex protein YqgF-like domain NRL03_20160 PF00561 alpha/beta hydrolase fold NRL03_20165 PF00156 Phosphoribosyl transferase domain NRL03_20170 PF01521 Iron-sulphur cluster biosynthesis NRL03_20170 PF01106 NifU-like domain NRL03_20175 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NRL03_20175 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NRL03_20180 PF02556 Preprotein translocase subunit SecB NRL03_20185 PF00581 Rhodanese-like domain NRL03_20190 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NRL03_20190 PF01676 Metalloenzyme superfamily NRL03_20195 PF01551 Peptidase family M23 NRL03_20205 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NRL03_20205 PF00356 Bacterial regulatory proteins, lacI family NRL03_20220 PF01081 KDPG and KHG aldolase NRL03_20225 PF00920 Dehydratase family NRL03_20230 PF01202 Shikimate kinase NRL03_20235 PF02447 GntP family permease NRL03_20240 PF13091 PLD-like domain NRL03_20245 PF00271 Helicase conserved C-terminal domain NRL03_20245 PF17191 RecG wedge domain NRL03_20245 PF00270 DEAD/DEAH box helicase NRL03_20255 PF00583 Acetyltransferase (GNAT) family NRL03_20255 PF09500 Putative thioesterase (yiiD_Cterm) NRL03_20265 PF02580 D-Tyr-tRNA(Tyr) deacylase NRL03_20270 PF03631 Virulence factor BrkB NRL03_20275 PF03144 Elongation factor Tu domain 2 NRL03_20275 PF00009 Elongation factor Tu GTP binding domain NRL03_20275 PF00679 Elongation factor G C-terminus NRL03_20280 PF00120 Glutamine synthetase, catalytic domain NRL03_20280 PF03951 Glutamine synthetase, beta-Grasp domain NRL03_20290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_20290 PF00512 His Kinase A (phospho-acceptor) domain NRL03_20290 PF00989 PAS fold NRL03_20295 PF02954 Bacterial regulatory protein, Fis family NRL03_20295 PF00072 Response regulator receiver domain NRL03_20295 PF00158 Sigma-54 interaction domain NRL03_20300 PF00962 Adenosine/AMP deaminase NRL03_20305 PF06969 HemN C-terminal domain NRL03_20305 PF04055 Radical SAM superfamily NRL03_20310 PF10675 Protein of unknown function (DUF2489) NRL03_20315 PF04220 Der GTPase activator (YihI) NRL03_20320 PF13808 DDE_Tnp_1-associated NRL03_20320 PF01609 Transposase DDE domain NRL03_20325 PF00034 Cytochrome c NRL03_20330 PF01926 50S ribosome-binding GTPase NRL03_20335 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NRL03_20335 PF01488 Shikimate / quinate 5-dehydrogenase NRL03_20335 PF08501 Shikimate dehydrogenase substrate binding domain NRL03_20340 PF01218 Coproporphyrinogen III oxidase NRL03_20345 PF01300 Telomere recombination NRL03_20350 PF01396 Topoisomerase DNA binding C4 zinc finger NRL03_20355 PF04361 Protein of unknown function (DUF494) NRL03_20360 PF02481 DNA recombination-mediator protein A NRL03_20360 PF17782 DprA winged helix domain NRL03_20370 PF01327 Polypeptide deformylase NRL03_20375 PF02911 Formyl transferase, C-terminal domain NRL03_20375 PF00551 Formyl transferase NRL03_20380 PF01189 16S rRNA methyltransferase RsmB/F NRL03_20380 PF01029 NusB family NRL03_20385 PF02080 TrkA-C domain NRL03_20385 PF02254 TrkA-N domain NRL03_20390 PF02386 Cation transport protein NRL03_20395 PF02646 RmuC family NRL03_20410 PF02082 Transcriptional regulator NRL03_20415 PF00294 pfkB family carbohydrate kinase NRL03_20420 PF03466 LysR substrate binding domain NRL03_20420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_20425 PF02540 NAD synthase NRL03_20425 PF00117 Glutamine amidotransferase class-I NRL03_20425 PF00958 GMP synthase C terminal domain NRL03_20430 PF00171 Aldehyde dehydrogenase family NRL03_20435 PF00202 Aminotransferase class-III NRL03_20440 PF01381 Helix-turn-helix NRL03_20440 PF07883 Cupin domain NRL03_20445 PF00171 Aldehyde dehydrogenase family NRL03_20455 PF00892 EamA-like transporter family NRL03_20460 PF12833 Helix-turn-helix domain NRL03_20465 PF01810 LysE type translocator NRL03_20470 PF06206 CpeT/CpcT family (DUF1001) NRL03_20490 PF14001 YdfZ protein NRL03_20505 PF03466 LysR substrate binding domain NRL03_20505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_20540 PF01609 Transposase DDE domain NRL03_20540 PF13808 DDE_Tnp_1-associated NRL03_20550 PF00580 UvrD/REP helicase N-terminal domain NRL03_20550 PF13361 UvrD-like helicase C-terminal domain NRL03_20555 PF02608 ABC transporter substrate-binding protein PnrA-like NRL03_20560 PF00005 ABC transporter NRL03_20565 PF02653 Branched-chain amino acid transport system / permease component NRL03_20570 PF02653 Branched-chain amino acid transport system / permease component NRL03_20580 PF05598 Transposase domain (DUF772) NRL03_20580 PF01609 Transposase DDE domain NRL03_20585 PF03466 LysR substrate binding domain NRL03_20585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL03_20590 PF08240 Alcohol dehydrogenase GroES-like domain NRL03_20590 PF00107 Zinc-binding dehydrogenase NRL03_20595 PF00756 Putative esterase NRL03_20610 PF12867 DinB superfamily NRL03_20610 PF03781 Sulfatase-modifying factor enzyme 1 NRL03_20615 PF13593 SBF-like CPA transporter family (DUF4137) NRL03_20620 PF13520 Amino acid permease NRL03_20625 PF01588 Putative tRNA binding domain NRL03_20630 PF13520 Amino acid permease NRL03_20635 PF04074 YhcH/YjgK/YiaL NRL03_20640 PF16353 Domain of unknown function(DUF4981) NRL03_20640 PF00703 Glycosyl hydrolases family 2 NRL03_20640 PF02836 Glycosyl hydrolases family 2, TIM barrel domain NRL03_20640 PF02837 Glycosyl hydrolases family 2, sugar binding domain NRL03_20640 PF02929 Beta galactosidase small chain NRL03_20645 PF00356 Bacterial regulatory proteins, lacI family NRL03_20680 PF12724 Flavodoxin domain NRL03_20685 PF02386 Cation transport protein NRL03_20690 PF09186 Domain of unknown function (DUF1949) NRL03_20690 PF01205 Uncharacterized protein family UPF0029 NRL03_20695 PF00557 Metallopeptidase family M24 NRL03_20700 PF13193 AMP-binding enzyme C-terminal domain NRL03_20700 PF00501 AMP-binding enzyme NRL03_20705 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NRL03_20705 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NRL03_20705 PF00378 Enoyl-CoA hydratase/isomerase NRL03_20710 PF00108 Thiolase, N-terminal domain NRL03_20710 PF02803 Thiolase, C-terminal domain NRL03_20715 PF00072 Response regulator receiver domain NRL03_20715 PF00486 Transcriptional regulatory protein, C terminal NRL03_20720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_20720 PF00512 His Kinase A (phospho-acceptor) domain NRL03_20720 PF00672 HAMP domain NRL03_20725 PF01547 Bacterial extracellular solute-binding protein NRL03_20740 PF01206 Sulfurtransferase TusA NRL03_20745 PF01042 Endoribonuclease L-PSP NRL03_20765 PF00691 OmpA family NRL03_20765 PF13488 Glycine zipper NRL03_20775 PF00857 Isochorismatase family NRL03_20780 PF03352 Methyladenine glycosylase NRL03_20785 PF02091 Glycyl-tRNA synthetase alpha subunit NRL03_20790 PF05746 DALR anticodon binding domain NRL03_20790 PF02092 Glycyl-tRNA synthetase beta subunit NRL03_20800 PF01609 Transposase DDE domain NRL03_20800 PF05598 Transposase domain (DUF772) NRL03_20835 PF03222 Tryptophan/tyrosine permease family NRL03_20840 PF03222 Tryptophan/tyrosine permease family NRL03_20845 PF01212 Beta-eliminating lyase NRL03_20850 PF13808 DDE_Tnp_1-associated NRL03_20850 PF01609 Transposase DDE domain NRL03_20855 PF01609 Transposase DDE domain NRL03_20860 PF12801 4Fe-4S binding domain NRL03_20870 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL03_20870 PF18113 Rubredoxin binding C-terminal domain NRL03_20875 PF00301 Rubredoxin NRL03_20875 PF00258 Flavodoxin NRL03_20875 PF00753 Metallo-beta-lactamase superfamily NRL03_20880 PF01590 GAF domain NRL03_20880 PF00158 Sigma-54 interaction domain NRL03_20885 PF00356 Bacterial regulatory proteins, lacI family NRL03_20890 PF13458 Periplasmic binding protein NRL03_20895 PF02653 Branched-chain amino acid transport system / permease component NRL03_20900 PF11862 Domain of unknown function (DUF3382) NRL03_20900 PF02653 Branched-chain amino acid transport system / permease component NRL03_20905 PF12399 Branched-chain amino acid ATP-binding cassette transporter NRL03_20905 PF00005 ABC transporter NRL03_20910 PF00005 ABC transporter NRL03_20920 PF01810 LysE type translocator NRL03_20925 PF00581 Rhodanese-like domain NRL03_20930 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease NRL03_20930 PF01694 Rhomboid family NRL03_20935 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_20935 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_20935 PF01610 Transposase NRL03_20940 PF12262 Bacterial virulence factor lipase N-terminal NRL03_20945 PF04380 Membrane fusogenic activity NRL03_20950 PF00175 Oxidoreductase NAD-binding domain NRL03_20955 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase NRL03_20965 PF07497 Rho termination factor, RNA-binding domain NRL03_20965 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NRL03_20965 PF07498 Rho termination factor, N-terminal domain NRL03_20970 PF00085 Thioredoxin NRL03_20975 PF00270 DEAD/DEAH box helicase NRL03_20975 PF00271 Helicase conserved C-terminal domain NRL03_20980 PF02541 Ppx/GppA phosphatase family NRL03_20990 PF04445 Putative SAM-dependent methyltransferase NRL03_20995 PF00990 Diguanylate cyclase, GGDEF domain NRL03_20995 PF03707 Bacterial signalling protein N terminal repeat NRL03_20995 PF00563 EAL domain NRL03_21005 PF01609 Transposase DDE domain NRL03_21015 PF01432 Peptidase family M3 NRL03_21020 PF00490 Delta-aminolevulinic acid dehydratase NRL03_21025 PF01026 TatD related DNase NRL03_21030 PF00902 Sec-independent protein translocase protein (TatC) NRL03_21035 PF02416 mttA/Hcf106 family NRL03_21040 PF02416 mttA/Hcf106 family NRL03_21045 PF03109 ABC1 family NRL03_21050 PF02036 SCP-2 sterol transfer family NRL03_21055 PF01209 ubiE/COQ5 methyltransferase family NRL03_21060 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NRL03_21065 PF07969 Amidohydrolase family NRL03_21095 PF00132 Bacterial transferase hexapeptide (six repeats) NRL03_21100 PF01367 5'-3' exonuclease, C-terminal SAM fold NRL03_21100 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NRL03_21100 PF00476 DNA polymerase family A NRL03_21100 PF01612 3'-5' exonuclease NRL03_21110 PF06005 Cell division protein ZapB NRL03_21120 PF00132 Bacterial transferase hexapeptide (six repeats) NRL03_21120 PF06426 Serine acetyltransferase, N-terminal NRL03_21125 PF01545 Cation efflux family NRL03_21125 PF16916 Dimerisation domain of Zinc Transporter NRL03_21130 PF00486 Transcriptional regulatory protein, C terminal NRL03_21130 PF00072 Response regulator receiver domain NRL03_21135 PF16527 Two-component sensor protein CpxA, periplasmic domain NRL03_21135 PF00672 HAMP domain NRL03_21135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_21135 PF00512 His Kinase A (phospho-acceptor) domain NRL03_21140 PF00588 SpoU rRNA Methylase family NRL03_21145 PF01554 MatE NRL03_21150 PF02630 SCO1/SenC NRL03_21160 PF01726 LexA DNA binding domain NRL03_21160 PF00717 Peptidase S24-like NRL03_21165 PF01553 Acyltransferase NRL03_21170 PF01040 UbiA prenyltransferase family NRL03_21175 PF04345 Chorismate lyase NRL03_21180 PF03748 Flagellar basal body-associated protein FliL NRL03_21200 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NRL03_21200 PF00356 Bacterial regulatory proteins, lacI family NRL03_21205 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRL03_21235 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) NRL03_21255 PF13439 Glycosyltransferase Family 4 NRL03_21260 PF01370 NAD dependent epimerase/dehydratase family NRL03_21265 PF08360 QacR-like protein, C-terminal region NRL03_21265 PF00440 Bacterial regulatory proteins, tetR family NRL03_21270 PF00155 Aminotransferase class I and II NRL03_21275 PF01610 Transposase NRL03_21275 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_21275 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_21280 PF08240 Alcohol dehydrogenase GroES-like domain NRL03_21280 PF00107 Zinc-binding dehydrogenase NRL03_21285 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NRL03_21290 PF03707 Bacterial signalling protein N terminal repeat NRL03_21290 PF00990 Diguanylate cyclase, GGDEF domain NRL03_21290 PF00563 EAL domain NRL03_21295 PF00580 UvrD/REP helicase N-terminal domain NRL03_21295 PF13361 UvrD-like helicase C-terminal domain NRL03_21300 PF00266 Aminotransferase class-V NRL03_21305 PF02657 Fe-S metabolism associated domain NRL03_21310 PF00899 ThiF family NRL03_21345 PF03544 Gram-negative bacterial TonB protein C-terminal NRL03_21350 PF02472 Biopolymer transport protein ExbD/TolR NRL03_21355 PF01618 MotA/TolQ/ExbB proton channel family NRL03_21360 PF01618 MotA/TolQ/ExbB proton channel family NRL03_21370 PF00196 Bacterial regulatory proteins, luxR family NRL03_21370 PF03472 Autoinducer binding domain NRL03_21375 PF01380 SIS domain NRL03_21380 PF00455 DeoR C terminal sensor domain NRL03_21380 PF08220 DeoR-like helix-turn-helix domain NRL03_21385 PF00072 Response regulator receiver domain NRL03_21385 PF00486 Transcriptional regulatory protein, C terminal NRL03_21390 PF00512 His Kinase A (phospho-acceptor) domain NRL03_21390 PF00672 HAMP domain NRL03_21390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL03_21395 PF00905 Penicillin binding protein transpeptidase domain NRL03_21405 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_21405 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_21405 PF01610 Transposase NRL03_21410 PF06123 Inner membrane protein CreD NRL03_21415 PF00132 Bacterial transferase hexapeptide (six repeats) NRL03_21415 PF12804 MobA-like NTP transferase domain NRL03_21415 PF14602 Hexapeptide repeat of succinyl-transferase NRL03_21420 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain NRL03_21420 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NRL03_21425 PF02874 ATP synthase alpha/beta family, beta-barrel domain NRL03_21425 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NRL03_21430 PF00231 ATP synthase NRL03_21435 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NRL03_21435 PF00306 ATP synthase alpha/beta chain, C terminal domain NRL03_21435 PF02874 ATP synthase alpha/beta family, beta-barrel domain NRL03_21440 PF00213 ATP synthase delta (OSCP) subunit NRL03_21445 PF00430 ATP synthase B/B' CF(0) NRL03_21450 PF00137 ATP synthase subunit C NRL03_21455 PF00119 ATP synthase A chain NRL03_21465 PF02195 ParB-like nuclease domain NRL03_21465 PF17762 HTH domain found in ParB protein NRL03_21470 PF13614 AAA domain NRL03_21475 PF02527 rRNA small subunit methyltransferase G NRL03_21480 PF01134 Glucose inhibited division protein A NRL03_21480 PF13932 GidA associated domain NRL03_21485 PF00258 Flavodoxin NRL03_21490 PF07715 TonB-dependent Receptor Plug Domain NRL03_21490 PF00593 TonB dependent receptor NRL03_21495 PF00005 ABC transporter NRL03_21500 PF00005 ABC transporter NRL03_21505 PF01497 Periplasmic binding protein NRL03_21510 PF01032 FecCD transport family NRL03_21515 PF10396 GTP-binding protein TrmE N-terminus NRL03_21515 PF01926 50S ribosome-binding GTPase NRL03_21515 PF12631 MnmE helical domain NRL03_21520 PF14849 YidC periplasmic domain NRL03_21520 PF02096 60Kd inner membrane protein NRL03_21525 PF01809 Putative membrane protein insertion efficiency factor NRL03_21530 PF00825 Ribonuclease P NRL03_21535 PF00468 Ribosomal protein L34 NRL03_21540 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL03_21540 PF01610 Transposase NRL03_21540 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL03_21545 PF00005 ABC transporter NRL03_21550 PF00528 Binding-protein-dependent transport system inner membrane component NRL03_21555 PF00497 Bacterial extracellular solute-binding proteins, family 3