locus-tag class description NRL09_00005 PF00308 Bacterial dnaA protein NRL09_00005 PF08299 Bacterial dnaA protein helix-turn-helix NRL09_00005 PF11638 DnaA N-terminal domain NRL09_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain NRL09_00010 PF02767 DNA polymerase III beta subunit, central domain NRL09_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain NRL09_00015 PF02463 RecF/RecN/SMC N terminal domain NRL09_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_00020 PF18053 DNA gyrase B subunit insert domain NRL09_00020 PF01751 Toprim domain NRL09_00020 PF00204 DNA gyrase B NRL09_00020 PF00986 DNA gyrase B subunit, carboxyl terminus NRL09_00025 PF02311 AraC-like ligand binding domain NRL09_00025 PF12833 Helix-turn-helix domain NRL09_00030 PF12706 Beta-lactamase superfamily domain NRL09_00035 PF00011 Hsp20/alpha crystallin family NRL09_00040 PF00011 Hsp20/alpha crystallin family NRL09_00045 PF00155 Aminotransferase class I and II NRL09_00050 PF01610 Transposase NRL09_00050 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_00050 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_00065 PF07690 Major Facilitator Superfamily NRL09_00070 PF00486 Transcriptional regulatory protein, C terminal NRL09_00070 PF00072 Response regulator receiver domain NRL09_00075 PF13493 Domain of unknown function (DUF4118) NRL09_00075 PF13492 GAF domain NRL09_00075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_00075 PF00512 His Kinase A (phospho-acceptor) domain NRL09_00075 PF02702 Osmosensitive K+ channel His kinase sensor domain NRL09_00080 PF02669 K+-transporting ATPase, c chain NRL09_00090 PF03814 Potassium-transporting ATPase A subunit NRL09_00095 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NRL09_00095 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL09_00100 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL09_00100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_00100 PF00512 His Kinase A (phospho-acceptor) domain NRL09_00105 PF00873 AcrB/AcrD/AcrF family NRL09_00110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRL09_00115 PF00440 Bacterial regulatory proteins, tetR family NRL09_00150 PF12146 Serine aminopeptidase, S33 NRL09_00155 PF12105 SpoU, rRNA methylase, C-terminal NRL09_00155 PF00588 SpoU rRNA Methylase family NRL09_00160 PF02824 TGS domain NRL09_00160 PF04607 Region found in RelA / SpoT proteins NRL09_00160 PF13291 ACT domain NRL09_00165 PF01192 RNA polymerase Rpb6 NRL09_00170 PF00625 Guanylate kinase NRL09_00175 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NRL09_00190 PF00892 EamA-like transporter family NRL09_00210 PF03466 LysR substrate binding domain NRL09_00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_00215 PF00579 tRNA synthetases class I (W and Y) NRL09_00220 PF00582 Universal stress protein family NRL09_00225 PF07055 Enoyl reductase FAD binding domain NRL09_00225 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NRL09_00225 PF12241 Trans-2-enoyl-CoA reductase catalytic region NRL09_00230 PF00990 Diguanylate cyclase, GGDEF domain NRL09_00230 PF05230 MASE2 domain NRL09_00235 PF00210 Ferritin-like domain NRL09_00245 PF07690 Major Facilitator Superfamily NRL09_00250 PF01810 LysE type translocator NRL09_00270 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL09_00270 PF01627 Hpt domain NRL09_00270 PF00989 PAS fold NRL09_00270 PF00072 Response regulator receiver domain NRL09_00270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_00270 PF00512 His Kinase A (phospho-acceptor) domain NRL09_00280 PF07694 5TMR of 5TMR-LYT NRL09_00280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_00280 PF06580 Histidine kinase NRL09_00285 PF04397 LytTr DNA-binding domain NRL09_00285 PF00072 Response regulator receiver domain NRL09_00290 PF07690 Major Facilitator Superfamily NRL09_00295 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NRL09_00295 PF02222 ATP-grasp domain NRL09_00300 PF00731 AIR carboxylase NRL09_00315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_00315 PF03466 LysR substrate binding domain NRL09_00320 PF07715 TonB-dependent Receptor Plug Domain NRL09_00320 PF00593 TonB dependent receptor NRL09_00325 PF01177 Asp/Glu/Hydantoin racemase NRL09_00360 PF13380 CoA binding domain NRL09_00360 PF00583 Acetyltransferase (GNAT) family NRL09_00360 PF13607 Succinyl-CoA ligase like flavodoxin domain NRL09_00370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_00370 PF03466 LysR substrate binding domain NRL09_00375 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NRL09_00375 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NRL09_00380 PF00342 Phosphoglucose isomerase NRL09_00390 PF00924 Mechanosensitive ion channel NRL09_00390 PF05552 Conserved TM helix NRL09_00405 PF00440 Bacterial regulatory proteins, tetR family NRL09_00410 PF00692 dUTPase NRL09_00415 PF04127 DNA / pantothenate metabolism flavoprotein NRL09_00415 PF02441 Flavoprotein NRL09_00420 PF04002 RadC-like JAB domain NRL09_00425 PF00830 Ribosomal L28 family NRL09_00430 PF00471 Ribosomal protein L33 NRL09_00440 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NRL09_00440 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NRL09_00440 PF06827 Zinc finger found in FPG and IleRS NRL09_00445 PF04393 Protein of unknown function (DUF535) NRL09_00450 PF01467 Cytidylyltransferase-like NRL09_00455 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NRL09_00460 PF00535 Glycosyl transferase family 2 NRL09_00465 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NRL09_00470 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) NRL09_00480 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_00480 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_00480 PF01610 Transposase NRL09_00485 PF08340 Domain of unknown function (DUF1732) NRL09_00485 PF03755 YicC-like family, N-terminal region NRL09_00490 PF01138 3' exoribonuclease family, domain 1 NRL09_00490 PF03725 3' exoribonuclease family, domain 2 NRL09_00495 PF00156 Phosphoribosyl transferase domain NRL09_00500 PF00403 Heavy-metal-associated domain NRL09_00505 PF00376 MerR family regulatory protein NRL09_00505 PF09278 MerR, DNA binding NRL09_00510 PF00563 EAL domain NRL09_00510 PF01590 GAF domain NRL09_00510 PF00990 Diguanylate cyclase, GGDEF domain NRL09_00510 PF00360 Phytochrome region NRL09_00515 PF06288 Protein of unknown function (DUF1040) NRL09_00520 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase NRL09_00520 PF12801 4Fe-4S binding domain NRL09_00520 PF13746 4Fe-4S dicluster domain NRL09_00525 PF01636 Phosphotransferase enzyme family NRL09_00530 PF01323 DSBA-like thioredoxin domain NRL09_00535 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_00540 PF00005 ABC transporter NRL09_00550 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NRL09_00550 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NRL09_00555 PF00857 Isochorismatase family NRL09_00565 PF04463 Protein of unknown function (DUF523) NRL09_00570 PF01553 Acyltransferase NRL09_00575 PF01553 Acyltransferase NRL09_00580 PF01078 Magnesium chelatase, subunit ChlI NRL09_00580 PF13335 Magnesium chelatase, subunit ChlI C-terminal NRL09_00585 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRL09_00585 PF00205 Thiamine pyrophosphate enzyme, central domain NRL09_00585 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NRL09_00595 PF01063 Amino-transferase class IV NRL09_00600 PF00920 Dehydratase family NRL09_00605 PF00585 C-terminal regulatory domain of Threonine dehydratase NRL09_00605 PF00291 Pyridoxal-phosphate dependent enzyme NRL09_00610 PF01389 OmpA-like transmembrane domain NRL09_00610 PF00691 OmpA family NRL09_00620 PF00440 Bacterial regulatory proteins, tetR family NRL09_00625 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NRL09_00625 PF00270 DEAD/DEAH box helicase NRL09_00625 PF00271 Helicase conserved C-terminal domain NRL09_00625 PF17764 3′ DNA-binding domain (3′BD) NRL09_00625 PF18074 Primosomal protein N C-terminal domain NRL09_00630 PF01197 Ribosomal protein L31 NRL09_00635 PF13460 NAD(P)H-binding NRL09_00635 PF11066 Protein of unknown function (DUF2867) NRL09_00640 PF00390 Malic enzyme, N-terminal domain NRL09_00640 PF03949 Malic enzyme, NAD binding domain NRL09_00650 PF00512 His Kinase A (phospho-acceptor) domain NRL09_00650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_00650 PF00672 HAMP domain NRL09_00655 PF00072 Response regulator receiver domain NRL09_00655 PF00486 Transcriptional regulatory protein, C terminal NRL09_00660 PF05958 tRNA (Uracil-5-)-methyltransferase NRL09_00675 PF02903 Alpha amylase, N-terminal ig-like domain NRL09_00675 PF00128 Alpha amylase, catalytic domain NRL09_00690 PF00012 Hsp70 protein NRL09_00695 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRL09_00695 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NRL09_00700 PF05981 CreA protein NRL09_00715 PF01258 Prokaryotic dksA/traR C4-type zinc finger NRL09_00720 PF00120 Glutamine synthetase, catalytic domain NRL09_00725 PF00202 Aminotransferase class-III NRL09_00730 PF13416 Bacterial extracellular solute-binding protein NRL09_00735 PF13416 Bacterial extracellular solute-binding protein NRL09_00740 PF08402 TOBE domain NRL09_00740 PF00005 ABC transporter NRL09_00745 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_00750 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_00755 PF03475 3-alpha domain NRL09_00755 PF03473 MOSC domain NRL09_00770 PF03061 Thioesterase superfamily NRL09_00775 PF00270 DEAD/DEAH box helicase NRL09_00775 PF00271 Helicase conserved C-terminal domain NRL09_00775 PF00570 HRDC domain NRL09_00775 PF16124 RecQ zinc-binding NRL09_00775 PF09382 RQC domain NRL09_00780 PF00034 Cytochrome c NRL09_00785 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NRL09_00795 PF02592 Putative vitamin uptake transporter NRL09_00800 PF01609 Transposase DDE domain NRL09_00800 PF13006 Insertion element 4 transposase N-terminal NRL09_00805 PF03737 Aldolase/RraA NRL09_00810 PF00672 HAMP domain NRL09_00810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL09_00815 PF01769 Divalent cation transporter NRL09_00815 PF00571 CBS domain NRL09_00815 PF03448 MgtE intracellular N domain NRL09_00820 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NRL09_00820 PF14824 Sirohaem biosynthesis protein central NRL09_00820 PF10414 Sirohaem synthase dimerisation region NRL09_00825 PF01226 Formate/nitrite transporter NRL09_00830 PF13806 Rieske-like [2Fe-2S] domain NRL09_00835 PF04324 BFD-like [2Fe-2S] binding domain NRL09_00835 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NRL09_00835 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NRL09_00835 PF18267 Rubredoxin NAD+ reductase C-terminal domain NRL09_00835 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL09_00850 PF00005 ABC transporter NRL09_00855 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRL09_00875 PF10431 C-terminal, D2-small domain, of ClpB protein NRL09_00875 PF07724 AAA domain (Cdc48 subfamily) NRL09_00875 PF00004 ATPase family associated with various cellular activities (AAA) NRL09_00880 PF00227 Proteasome subunit NRL09_00890 PF05746 DALR anticodon binding domain NRL09_00890 PF00750 tRNA synthetases class I (R) NRL09_00890 PF03485 Arginyl tRNA synthetase N terminal domain NRL09_00900 PF04545 Sigma-70, region 4 NRL09_00900 PF04542 Sigma-70 region 2 NRL09_00905 PF12973 ChrR Cupin-like domain NRL09_00910 PF02673 Bacitracin resistance protein BacA NRL09_00915 PF00248 Aldo/keto reductase family NRL09_00920 PF01263 Aldose 1-epimerase NRL09_00925 PF08544 GHMP kinases C terminal NRL09_00925 PF00288 GHMP kinases N terminal domain NRL09_00925 PF10509 Galactokinase galactose-binding signature NRL09_00930 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain NRL09_00930 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain NRL09_00935 PF16363 GDP-mannose 4,6 dehydratase NRL09_00940 PF00356 Bacterial regulatory proteins, lacI family NRL09_00945 PF02929 Beta galactosidase small chain NRL09_00945 PF16353 Domain of unknown function(DUF4981) NRL09_00945 PF02836 Glycosyl hydrolases family 2, TIM barrel domain NRL09_00945 PF02837 Glycosyl hydrolases family 2, sugar binding domain NRL09_00945 PF00703 Glycosyl hydrolases family 2 NRL09_00950 PF13407 Periplasmic binding protein domain NRL09_00955 PF00005 ABC transporter NRL09_00960 PF02653 Branched-chain amino acid transport system / permease component NRL09_00965 PF00672 HAMP domain NRL09_00965 PF02743 Cache domain NRL09_00965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL09_00980 PF00696 Amino acid kinase family NRL09_00985 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NRL09_00985 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NRL09_00990 PF03606 C4-dicarboxylate anaerobic carrier NRL09_00995 PF02863 Arginine repressor, C-terminal domain NRL09_00995 PF01316 Arginine repressor, DNA binding domain NRL09_01000 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain NRL09_01000 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain NRL09_01005 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NRL09_01005 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NRL09_01030 PF00672 HAMP domain NRL09_01030 PF02743 Cache domain NRL09_01030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL09_01040 PF08212 Lipocalin-like domain NRL09_01045 PF06719 AraC-type transcriptional regulator N-terminus NRL09_01045 PF12833 Helix-turn-helix domain NRL09_01050 PF00465 Iron-containing alcohol dehydrogenase NRL09_01055 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NRL09_01055 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NRL09_01055 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch NRL09_01060 PF02233 NAD(P) transhydrogenase beta subunit NRL09_01065 PF01609 Transposase DDE domain NRL09_01065 PF13006 Insertion element 4 transposase N-terminal NRL09_01075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_01080 PF00072 Response regulator receiver domain NRL09_01080 PF00486 Transcriptional regulatory protein, C terminal NRL09_01095 PF01794 Ferric reductase like transmembrane component NRL09_01100 PF00174 Oxidoreductase molybdopterin binding domain NRL09_01105 PF06496 Protein of unknown function (DUF1097) NRL09_01110 PF00072 Response regulator receiver domain NRL09_01110 PF00158 Sigma-54 interaction domain NRL09_01120 PF00512 His Kinase A (phospho-acceptor) domain NRL09_01120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_01140 PF00478 IMP dehydrogenase / GMP reductase domain NRL09_01140 PF00571 CBS domain NRL09_01150 PF01037 Lrp/AsnC ligand binding domain NRL09_01155 PF03590 Aspartate-ammonia ligase NRL09_01165 PF00004 ATPase family associated with various cellular activities (AAA) NRL09_01165 PF07724 AAA domain (Cdc48 subfamily) NRL09_01165 PF17871 AAA lid domain NRL09_01165 PF02861 Clp amino terminal domain, pathogenicity island component NRL09_01165 PF10431 C-terminal, D2-small domain, of ClpB protein NRL09_01170 PF02578 Multi-copper polyphenol oxidoreductase laccase NRL09_01175 PF01479 S4 domain NRL09_01175 PF00849 RNA pseudouridylate synthase NRL09_01180 PF13525 Outer membrane lipoprotein NRL09_01185 PF03313 Serine dehydratase alpha chain NRL09_01190 PF13309 HTH domain NRL09_01190 PF08348 YheO-like PAS domain NRL09_01200 PF01609 Transposase DDE domain NRL09_01210 PF00384 Molybdopterin oxidoreductase NRL09_01210 PF18364 Molybdopterin oxidoreductase N-terminal domain NRL09_01210 PF01568 Molydopterin dinucleotide binding domain NRL09_01215 PF03264 NapC/NirT cytochrome c family, N-terminal region NRL09_01220 PF01751 Toprim domain NRL09_01220 PF01131 DNA topoisomerase NRL09_01225 PF01610 Transposase NRL09_01225 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_01225 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_01240 PF12852 Cupin NRL09_01240 PF12833 Helix-turn-helix domain NRL09_01245 PF02386 Cation transport protein NRL09_01250 PF02254 TrkA-N domain NRL09_01250 PF02080 TrkA-C domain NRL09_01255 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NRL09_01255 PF01565 FAD binding domain NRL09_01260 PF02237 Biotin protein ligase C terminal domain NRL09_01260 PF03099 Biotin/lipoate A/B protein ligase family NRL09_01260 PF08279 HTH domain NRL09_01265 PF00485 Phosphoribulokinase / Uridine kinase family NRL09_01280 PF03144 Elongation factor Tu domain 2 NRL09_01280 PF03143 Elongation factor Tu C-terminal domain NRL09_01280 PF00009 Elongation factor Tu GTP binding domain NRL09_01290 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NRL09_01295 PF00467 KOW motif NRL09_01295 PF02357 Transcription termination factor nusG NRL09_01300 PF00298 Ribosomal protein L11, RNA binding domain NRL09_01300 PF03946 Ribosomal protein L11, N-terminal domain NRL09_01305 PF00687 Ribosomal protein L1p/L10e family NRL09_01310 PF00466 Ribosomal protein L10 NRL09_01315 PF00542 Ribosomal protein L7/L12 C-terminal domain NRL09_01315 PF16320 Ribosomal protein L7/L12 dimerisation domain NRL09_01320 PF04565 RNA polymerase Rpb2, domain 3 NRL09_01320 PF04560 RNA polymerase Rpb2, domain 7 NRL09_01320 PF00562 RNA polymerase Rpb2, domain 6 NRL09_01320 PF04563 RNA polymerase beta subunit NRL09_01320 PF04561 RNA polymerase Rpb2, domain 2 NRL09_01320 PF10385 RNA polymerase beta subunit external 1 domain NRL09_01325 PF04998 RNA polymerase Rpb1, domain 5 NRL09_01325 PF04983 RNA polymerase Rpb1, domain 3 NRL09_01325 PF00623 RNA polymerase Rpb1, domain 2 NRL09_01325 PF04997 RNA polymerase Rpb1, domain 1 NRL09_01325 PF05000 RNA polymerase Rpb1, domain 4 NRL09_01330 PF08348 YheO-like PAS domain NRL09_01330 PF13309 HTH domain NRL09_01335 PF01042 Endoribonuclease L-PSP NRL09_01340 PF02635 DsrE/DsrF-like family NRL09_01345 PF02635 DsrE/DsrF-like family NRL09_01350 PF04077 DsrH like protein NRL09_01355 PF00164 Ribosomal protein S12/S23 NRL09_01360 PF00177 Ribosomal protein S7p/S5e NRL09_01365 PF00679 Elongation factor G C-terminus NRL09_01365 PF14492 Elongation Factor G, domain II NRL09_01365 PF03764 Elongation factor G, domain IV NRL09_01365 PF03144 Elongation factor Tu domain 2 NRL09_01365 PF00009 Elongation factor Tu GTP binding domain NRL09_01370 PF03143 Elongation factor Tu C-terminal domain NRL09_01370 PF03144 Elongation factor Tu domain 2 NRL09_01370 PF00009 Elongation factor Tu GTP binding domain NRL09_01410 PF03079 ARD/ARD' family NRL09_01420 PF00860 Permease family NRL09_01425 PF02733 Dak1 domain NRL09_01430 PF02734 DAK2 domain NRL09_01435 PF00381 PTS HPr component phosphorylation site NRL09_01435 PF03610 PTS system fructose IIA component NRL09_01435 PF05524 PEP-utilising enzyme, N-terminal NRL09_01435 PF00391 PEP-utilising enzyme, mobile domain NRL09_01440 PF00989 PAS fold NRL09_01440 PF00158 Sigma-54 interaction domain NRL09_01440 PF02954 Bacterial regulatory protein, Fis family NRL09_01445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_01445 PF03466 LysR substrate binding domain NRL09_01450 PF04371 Porphyromonas-type peptidyl-arginine deiminase NRL09_01455 PF00795 Carbon-nitrogen hydrolase NRL09_01460 PF13416 Bacterial extracellular solute-binding protein NRL09_01465 PF04371 Porphyromonas-type peptidyl-arginine deiminase NRL09_01470 PF00106 short chain dehydrogenase NRL09_01475 PF01594 AI-2E family transporter NRL09_01480 PF00293 NUDIX domain NRL09_01500 PF00199 Catalase NRL09_01500 PF06628 Catalase-related immune-responsive NRL09_01505 PF00583 Acetyltransferase (GNAT) family NRL09_01525 PF00072 Response regulator receiver domain NRL09_01525 PF00990 Diguanylate cyclase, GGDEF domain NRL09_01535 PF08402 TOBE domain NRL09_01535 PF00005 ABC transporter NRL09_01545 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_01560 PF00392 Bacterial regulatory proteins, gntR family NRL09_01560 PF07702 UTRA domain NRL09_01570 PF03466 LysR substrate binding domain NRL09_01570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_01580 PF02678 Pirin NRL09_01580 PF17954 Quercetinase C-terminal cupin domain NRL09_01585 PF07681 DoxX NRL09_01590 PF17946 RecC C-terminal domain NRL09_01595 PF12705 PD-(D/E)XK nuclease superfamily NRL09_01595 PF13361 UvrD-like helicase C-terminal domain NRL09_01595 PF00580 UvrD/REP helicase N-terminal domain NRL09_01600 PF13538 UvrD-like helicase C-terminal domain NRL09_01605 PF00905 Penicillin binding protein transpeptidase domain NRL09_01605 PF00912 Transglycosylase NRL09_01605 PF17092 Penicillin-binding protein OB-like domain NRL09_01630 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRL09_01640 PF00909 Ammonium Transporter Family NRL09_01645 PF00543 Nitrogen regulatory protein P-II NRL09_01650 PF00990 Diguanylate cyclase, GGDEF domain NRL09_01650 PF08448 PAS fold NRL09_01660 PF00672 HAMP domain NRL09_01660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL09_01670 PF00072 Response regulator receiver domain NRL09_01670 PF00486 Transcriptional regulatory protein, C terminal NRL09_01675 PF00512 His Kinase A (phospho-acceptor) domain NRL09_01675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_01675 PF00672 HAMP domain NRL09_01680 PF00313 'Cold-shock' DNA-binding domain NRL09_01700 PF00436 Single-strand binding protein family NRL09_01705 PF00196 Bacterial regulatory proteins, luxR family NRL09_01710 PF00005 ABC transporter NRL09_01710 PF17755 UvrA DNA-binding domain NRL09_01710 PF17760 UvrA interaction domain NRL09_01715 PF01609 Transposase DDE domain NRL09_01715 PF13808 DDE_Tnp_1-associated NRL09_01720 PF03922 OmpW family NRL09_01725 PF12729 Four helix bundle sensory module for signal transduction NRL09_01725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL09_01725 PF00672 HAMP domain NRL09_01740 PF02219 Methylenetetrahydrofolate reductase NRL09_01750 PF03594 Benzoate membrane transport protein NRL09_01755 PF01381 Helix-turn-helix NRL09_01755 PF07883 Cupin domain NRL09_01790 PF04363 Protein of unknown function (DUF496) NRL09_01800 PF04751 Protein of unknown function (DUF615) NRL09_01805 PF01523 Putative modulator of DNA gyrase NRL09_01820 PF07719 Tetratricopeptide repeat NRL09_01820 PF07219 HemY protein N-terminus NRL09_01825 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase NRL09_01830 PF02602 Uroporphyrinogen-III synthase HemD NRL09_01835 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NRL09_01835 PF03900 Porphobilinogen deaminase, C-terminal domain NRL09_01840 PF12633 Adenylate cyclase NT domain NRL09_01840 PF01295 Adenylate cyclase, class-I NRL09_01845 PF02230 Phospholipase/Carboxylesterase NRL09_01850 PF01491 Frataxin-like domain NRL09_01860 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NRL09_01860 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NRL09_01865 PF01678 Diaminopimelate epimerase NRL09_01875 PF02899 Phage integrase, N-terminal SAM-like domain NRL09_01875 PF00589 Phage integrase family NRL09_01880 PF13419 Haloacid dehalogenase-like hydrolase NRL09_01890 PF07722 Peptidase C26 NRL09_01905 PF04307 LexA-binding, inner membrane-associated putative hydrolase NRL09_01910 PF02464 Competence-damaged protein NRL09_01910 PF00994 Probable molybdopterin binding domain NRL09_01920 PF04204 Homoserine O-succinyltransferase NRL09_01930 PF01037 Lrp/AsnC ligand binding domain NRL09_01935 PF00884 Sulfatase NRL09_01945 PF00128 Alpha amylase, catalytic domain NRL09_01945 PF02903 Alpha amylase, N-terminal ig-like domain NRL09_01945 PF16657 Maltogenic Amylase, C-terminal domain NRL09_01950 PF02308 MgtC family NRL09_01970 PF00106 short chain dehydrogenase NRL09_01985 PF00465 Iron-containing alcohol dehydrogenase NRL09_01995 PF01053 Cys/Met metabolism PLP-dependent enzyme NRL09_02005 PF12793 Sugar transport-related sRNA regulator N-term NRL09_02005 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRL09_02025 PF00561 alpha/beta hydrolase fold NRL09_02035 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NRL09_02035 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NRL09_02040 PF02698 DUF218 domain NRL09_02045 PF08453 Peptidase family M9 N-terminal NRL09_02045 PF01752 Collagenase NRL09_02050 PF13193 AMP-binding enzyme C-terminal domain NRL09_02050 PF00501 AMP-binding enzyme NRL09_02055 PF13378 Enolase C-terminal domain-like NRL09_02060 PF00378 Enoyl-CoA hydratase/isomerase NRL09_02065 PF12697 Alpha/beta hydrolase family NRL09_02070 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRL09_02070 PF16582 Middle domain of thiamine pyrophosphate NRL09_02070 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NRL09_02075 PF00425 chorismate binding enzyme NRL09_02080 PF01040 UbiA prenyltransferase family NRL09_02100 PF03880 DbpA RNA binding domain NRL09_02100 PF00270 DEAD/DEAH box helicase NRL09_02100 PF00271 Helicase conserved C-terminal domain NRL09_02105 PF01773 Na+ dependent nucleoside transporter N-terminus NRL09_02105 PF07670 Nucleoside recognition NRL09_02105 PF07662 Na+ dependent nucleoside transporter C-terminus NRL09_02120 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 NRL09_02125 PF01544 CorA-like Mg2+ transporter protein NRL09_02140 PF03471 Transporter associated domain NRL09_02140 PF00999 Sodium/hydrogen exchanger family NRL09_02140 PF02080 TrkA-C domain NRL09_02145 PF05068 Mannitol repressor NRL09_02150 PF08125 Mannitol dehydrogenase C-terminal domain NRL09_02150 PF01232 Mannitol dehydrogenase Rossmann domain NRL09_02155 PF02378 Phosphotransferase system, EIIC NRL09_02155 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NRL09_02155 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRL09_02160 PF17876 Cold shock domain NRL09_02160 PF08206 Ribonuclease B OB domain NRL09_02160 PF00773 RNB domain NRL09_02165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_02165 PF03466 LysR substrate binding domain NRL09_02170 PF00765 Autoinducer synthase NRL09_02175 PF03472 Autoinducer binding domain NRL09_02175 PF00196 Bacterial regulatory proteins, luxR family NRL09_02180 PF01810 LysE type translocator NRL09_02185 PF02872 5'-nucleotidase, C-terminal domain NRL09_02185 PF00149 Calcineurin-like phosphoesterase NRL09_02190 PF03279 Bacterial lipid A biosynthesis acyltransferase NRL09_02195 PF01467 Cytidylyltransferase-like NRL09_02195 PF00294 pfkB family carbohydrate kinase NRL09_02200 PF02321 Outer membrane efflux protein NRL09_02205 PF00293 NUDIX domain NRL09_02210 PF06853 Protein of unknown function (DUF1249) NRL09_02215 PF00149 Calcineurin-like phosphoesterase NRL09_02220 PF05728 Uncharacterised protein family (UPF0227) NRL09_02225 PF00293 NUDIX domain NRL09_02235 PF07869 Protein of unknown function (DUF1656) NRL09_02240 PF00529 HlyD membrane-fusion protein of T1SS NRL09_02240 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRL09_02245 PF04632 Fusaric acid resistance protein family NRL09_02250 PF01751 Toprim domain NRL09_02250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_02250 PF00204 DNA gyrase B NRL09_02250 PF00986 DNA gyrase B subunit, carboxyl terminus NRL09_02255 PF03989 DNA gyrase C-terminal domain, beta-propeller NRL09_02255 PF00521 DNA gyrase/topoisomerase IV, subunit A NRL09_02265 PF13808 DDE_Tnp_1-associated NRL09_02265 PF01609 Transposase DDE domain NRL09_02305 PF00684 DnaJ central domain NRL09_02305 PF01556 DnaJ C terminal domain NRL09_02305 PF00226 DnaJ domain NRL09_02315 PF00578 AhpC/TSA family NRL09_02335 PF01553 Acyltransferase NRL09_02340 PF04012 PspA/IM30 family NRL09_02355 PF01541 GIY-YIG catalytic domain NRL09_02360 PF00892 EamA-like transporter family NRL09_02365 PF03167 Uracil DNA glycosylase superfamily NRL09_02375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_02375 PF03466 LysR substrate binding domain NRL09_02380 PF00950 ABC 3 transport family NRL09_02385 PF00005 ABC transporter NRL09_02390 PF01297 Zinc-uptake complex component A periplasmic NRL09_02410 PF01476 LysM domain NRL09_02410 PF01551 Peptidase family M23 NRL09_02410 PF08525 Opacity-associated protein A N-terminal motif NRL09_02415 PF13006 Insertion element 4 transposase N-terminal NRL09_02415 PF01609 Transposase DDE domain NRL09_02420 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRL09_02425 PF04222 Protein of unknown function (DUF416) NRL09_02430 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_02430 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_02430 PF01610 Transposase NRL09_02455 PF00892 EamA-like transporter family NRL09_02460 PF01037 Lrp/AsnC ligand binding domain NRL09_02465 PF14602 Hexapeptide repeat of succinyl-transferase NRL09_02465 PF12464 Maltose acetyltransferase NRL09_02470 PF00128 Alpha amylase, catalytic domain NRL09_02470 PF11941 Domain of unknown function (DUF3459) NRL09_02475 PF00367 phosphotransferase system, EIIB NRL09_02475 PF02378 Phosphotransferase system, EIIC NRL09_02480 PF00356 Bacterial regulatory proteins, lacI family NRL09_02495 PF00710 Asparaginase, N-terminal NRL09_02495 PF17763 Glutaminase/Asparaginase C-terminal domain NRL09_02510 PF02142 MGS-like domain NRL09_02515 PF00210 Ferritin-like domain NRL09_02530 PF08351 Domain of unknown function (DUF1726) NRL09_02530 PF13718 GNAT acetyltransferase 2 NRL09_02530 PF17176 tRNA-binding domain NRL09_02530 PF05127 Helicase NRL09_02535 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NRL09_02535 PF02790 Cytochrome C oxidase subunit II, transmembrane domain NRL09_02540 PF00115 Cytochrome C and Quinol oxidase polypeptide I NRL09_02545 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 NRL09_02550 PF00510 Cytochrome c oxidase subunit III NRL09_02575 PF01040 UbiA prenyltransferase family NRL09_02595 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_02600 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_02605 PF00005 ABC transporter NRL09_02605 PF08402 TOBE domain NRL09_02610 PF13416 Bacterial extracellular solute-binding protein NRL09_02615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_02615 PF03466 LysR substrate binding domain NRL09_02620 PF03553 Na+/H+ antiporter family NRL09_02650 PF00534 Glycosyl transferases group 1 NRL09_02650 PF08323 Starch synthase catalytic domain NRL09_02660 PF08468 Methyltransferase small domain N-terminal NRL09_02660 PF05175 Methyltransferase small domain NRL09_02665 PF00701 Dihydrodipicolinate synthetase family NRL09_02670 PF00360 Phytochrome region NRL09_02670 PF00990 Diguanylate cyclase, GGDEF domain NRL09_02670 PF00563 EAL domain NRL09_02670 PF01590 GAF domain NRL09_02675 PF13419 Haloacid dehalogenase-like hydrolase NRL09_02680 PF17209 Hfq protein NRL09_02685 PF04403 Paraquat-inducible protein A NRL09_02690 PF02470 MlaD protein NRL09_02695 PF03886 ABC-type transport auxiliary lipoprotein component NRL09_02700 PF01389 OmpA-like transmembrane domain NRL09_02700 PF00691 OmpA family NRL09_02705 PF00657 GDSL-like Lipase/Acylhydrolase NRL09_02715 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain NRL09_02715 PF01464 Transglycosylase SLT domain NRL09_02720 PF04362 Bacterial Fe(2+) trafficking NRL09_02725 PF00730 HhH-GPD superfamily base excision DNA repair protein NRL09_02725 PF10576 Iron-sulfur binding domain of endonuclease III NRL09_02725 PF14815 NUDIX domain NRL09_02725 PF00633 Helix-hairpin-helix motif NRL09_02730 PF16537 Type II secretion system protein B NRL09_02735 PF13401 AAA domain NRL09_02735 PF01471 Putative peptidoglycan binding domain NRL09_02740 PF12627 Probable RNA and SrmB- binding site of polymerase A NRL09_02740 PF01966 HD domain NRL09_02740 PF01743 Poly A polymerase head domain NRL09_02745 PF01384 Phosphate transporter family NRL09_02750 PF01865 Protein of unknown function DUF47 NRL09_02755 PF01928 CYTH domain NRL09_02760 PF05433 Glycine zipper 2TM domain NRL09_02770 PF01321 Creatinase/Prolidase N-terminal domain NRL09_02770 PF00557 Metallopeptidase family M24 NRL09_02775 PF00392 Bacterial regulatory proteins, gntR family NRL09_02780 PF01293 Phosphoenolpyruvate carboxykinase NRL09_02785 PF01430 Hsp33 protein NRL09_02790 PF01479 S4 domain NRL09_02795 PF11356 Type II secretion system protein C NRL09_02800 PF00263 Bacterial type II and III secretion system protein NRL09_02800 PF03958 Bacterial type II/III secretion system short domain NRL09_02805 PF00437 Type II/IV secretion system protein NRL09_02810 PF00482 Type II secretion system (T2SS), protein F NRL09_02815 PF07963 Prokaryotic N-terminal methylation motif NRL09_02815 PF08334 Type II secretion system (T2SS), protein G NRL09_02820 PF07963 Prokaryotic N-terminal methylation motif NRL09_02820 PF12019 Type II transport protein GspH NRL09_02825 PF02501 Type II secretion system (T2SS), protein I NRL09_02825 PF07963 Prokaryotic N-terminal methylation motif NRL09_02830 PF07963 Prokaryotic N-terminal methylation motif NRL09_02830 PF11612 Type II secretion system (T2SS), protein J NRL09_02840 PF03934 Type II secretion system (T2SS), protein K NRL09_02845 PF05134 Type II secretion system (T2SS), protein L NRL09_02845 PF12693 GspL periplasmic domain NRL09_02850 PF04612 Type II secretion system (T2SS), protein M NRL09_02855 PF01203 Type II secretion system (T2SS), protein N NRL09_02860 PF00196 Bacterial regulatory proteins, luxR family NRL09_02865 PF00579 tRNA synthetases class I (W and Y) NRL09_02865 PF01479 S4 domain NRL09_02870 PF03466 LysR substrate binding domain NRL09_02870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_02875 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NRL09_02880 PF13419 Haloacid dehalogenase-like hydrolase NRL09_02885 PF00293 NUDIX domain NRL09_02890 PF00459 Inositol monophosphatase family NRL09_02895 PF03222 Tryptophan/tyrosine permease family NRL09_02900 PF01588 Putative tRNA binding domain NRL09_02905 PF12833 Helix-turn-helix domain NRL09_02905 PF02311 AraC-like ligand binding domain NRL09_02910 PF01340 Met Apo-repressor, MetJ NRL09_02915 PF01053 Cys/Met metabolism PLP-dependent enzyme NRL09_02920 PF00696 Amino acid kinase family NRL09_02920 PF00742 Homoserine dehydrogenase NRL09_02920 PF03447 Homoserine dehydrogenase, NAD binding domain NRL09_02925 PF04172 LrgB-like family NRL09_02930 PF03788 LrgA family NRL09_02935 PF03466 LysR substrate binding domain NRL09_02935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_02950 PF00392 Bacterial regulatory proteins, gntR family NRL09_02950 PF00155 Aminotransferase class I and II NRL09_02970 PF04073 Aminoacyl-tRNA editing domain NRL09_02975 PF05231 MASE1 NRL09_02975 PF00563 EAL domain NRL09_02975 PF00990 Diguanylate cyclase, GGDEF domain NRL09_02975 PF08447 PAS fold NRL09_02975 PF08448 PAS fold NRL09_02975 PF13426 PAS domain NRL09_02980 PF00311 Phosphoenolpyruvate carboxylase NRL09_02985 PF01546 Peptidase family M20/M25/M40 NRL09_02985 PF07687 Peptidase dimerisation domain NRL09_02990 PF02774 Semialdehyde dehydrogenase, dimerisation domain NRL09_02990 PF01118 Semialdehyde dehydrogenase, NAD binding domain NRL09_02995 PF00696 Amino acid kinase family NRL09_03000 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NRL09_03000 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NRL09_03005 PF00764 Arginosuccinate synthase NRL09_03010 PF14698 Argininosuccinate lyase C-terminal NRL09_03010 PF00206 Lyase NRL09_03015 PF01610 Transposase NRL09_03015 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_03015 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_03020 PF03466 LysR substrate binding domain NRL09_03020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_03030 PF14552 Tautomerase enzyme NRL09_03060 PF12464 Maltose acetyltransferase NRL09_03060 PF14602 Hexapeptide repeat of succinyl-transferase NRL09_03065 PF13194 Domain of unknown function (DUF4010) NRL09_03070 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL09_03075 PF00005 ABC transporter NRL09_03080 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_03085 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_03090 PF00291 Pyridoxal-phosphate dependent enzyme NRL09_03095 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NRL09_03095 PF00326 Prolyl oligopeptidase family NRL09_03110 PF03710 Glutamate-ammonia ligase adenylyltransferase NRL09_03110 PF08335 GlnD PII-uridylyltransferase NRL09_03120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL09_03120 PF02743 Cache domain NRL09_03120 PF00672 HAMP domain NRL09_03125 PF00027 Cyclic nucleotide-binding domain NRL09_03125 PF00520 Ion transport protein NRL09_03130 PF08239 Bacterial SH3 domain NRL09_03135 PF00293 NUDIX domain NRL09_03135 PF09297 NADH pyrophosphatase zinc ribbon domain NRL09_03140 PF01208 Uroporphyrinogen decarboxylase (URO-D) NRL09_03145 PF00480 ROK family NRL09_03150 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NRL09_03150 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NRL09_03155 PF00162 Phosphoglycerate kinase NRL09_03160 PF01116 Fructose-bisphosphate aldolase class-II NRL09_03165 PF01266 FAD dependent oxidoreductase NRL09_03175 PF11412 Disulphide bond corrector protein DsbC NRL09_03175 PF02683 Cytochrome C biogenesis protein transmembrane region NRL09_03180 PF03091 CutA1 divalent ion tolerance protein NRL09_03195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_03195 PF03466 LysR substrate binding domain NRL09_03200 PF01571 Aminomethyltransferase folate-binding domain NRL09_03205 PF03937 Flavinator of succinate dehydrogenase NRL09_03215 PF00890 FAD binding domain NRL09_03215 PF02910 Fumarate reductase flavoprotein C-term NRL09_03220 PF04542 Sigma-70 region 2 NRL09_03220 PF08281 Sigma-70, region 4 NRL09_03225 PF03872 Anti sigma-E protein RseA, N-terminal domain NRL09_03225 PF03873 Anti sigma-E protein RseA, C-terminal domain NRL09_03230 PF17188 MucB/RseB C-terminal domain NRL09_03230 PF03888 MucB/RseB N-terminal domain NRL09_03240 PF03144 Elongation factor Tu domain 2 NRL09_03240 PF00679 Elongation factor G C-terminus NRL09_03240 PF06421 GTP-binding protein LepA C-terminus NRL09_03240 PF00009 Elongation factor Tu GTP binding domain NRL09_03245 PF10502 Signal peptidase, peptidase S26 NRL09_03250 PF00035 Double-stranded RNA binding motif NRL09_03250 PF14622 Ribonuclease-III-like NRL09_03255 PF07650 KH domain NRL09_03255 PF01926 50S ribosome-binding GTPase NRL09_03260 PF02565 Recombination protein O C terminal NRL09_03260 PF11967 Recombination protein O N terminal NRL09_03265 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ NRL09_03270 PF01510 N-acetylmuramoyl-L-alanine amidase NRL09_03275 PF07308 Protein of unknown function (DUF1456) NRL09_03280 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NRL09_03280 PF01627 Hpt domain NRL09_03280 PF00512 His Kinase A (phospho-acceptor) domain NRL09_03280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_03280 PF00672 HAMP domain NRL09_03280 PF00072 Response regulator receiver domain NRL09_03285 PF05958 tRNA (Uracil-5-)-methyltransferase NRL09_03285 PF01938 TRAM domain NRL09_03290 PF02824 TGS domain NRL09_03290 PF13291 ACT domain NRL09_03290 PF04607 Region found in RelA / SpoT proteins NRL09_03295 PF03819 MazG nucleotide pyrophosphohydrolase domain NRL09_03300 PF06418 CTP synthase N-terminus NRL09_03300 PF00117 Glutamine amidotransferase class-I NRL09_03305 PF03952 Enolase, N-terminal domain NRL09_03305 PF00113 Enolase, C-terminal TIM barrel domain NRL09_03310 PF04977 Septum formation initiator NRL09_03315 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NRL09_03320 PF02542 YgbB family NRL09_03325 PF01142 tRNA pseudouridine synthase D (TruD) NRL09_03330 PF01975 Survival protein SurE NRL09_03340 PF09335 SNARE associated Golgi protein NRL09_03345 PF01476 LysM domain NRL09_03345 PF01551 Peptidase family M23 NRL09_03350 PF04539 Sigma-70 region 3 NRL09_03350 PF04545 Sigma-70, region 4 NRL09_03350 PF04542 Sigma-70 region 2 NRL09_03350 PF00140 Sigma-70 factor, region 1.2 NRL09_03355 PF00814 Glycoprotease family NRL09_03360 PF01165 Ribosomal protein S21 NRL09_03365 PF09424 Yqey-like protein NRL09_03370 PF10410 DnaB-helicase binding domain of primase NRL09_03370 PF08278 DNA primase DnaG DnaB-binding NRL09_03370 PF08275 DNA primase catalytic core, N-terminal domain NRL09_03370 PF01807 CHC2 zinc finger NRL09_03375 PF00140 Sigma-70 factor, region 1.2 NRL09_03375 PF04542 Sigma-70 region 2 NRL09_03375 PF04539 Sigma-70 region 3 NRL09_03375 PF04545 Sigma-70, region 4 NRL09_03375 PF04546 Sigma-70, non-essential region NRL09_03375 PF03979 Sigma-70 factor, region 1.1 NRL09_03390 PF00128 Alpha amylase, catalytic domain NRL09_03405 PF01610 Transposase NRL09_03405 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_03405 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_03410 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NRL09_03410 PF02843 Phosphoribosylglycinamide synthetase, C domain NRL09_03410 PF02844 Phosphoribosylglycinamide synthetase, N domain NRL09_03415 PF01808 AICARFT/IMPCHase bienzyme NRL09_03415 PF02142 MGS-like domain NRL09_03420 PF13411 MerR HTH family regulatory protein NRL09_03430 PF03889 Alternative ribosome-rescue factor A NRL09_03435 PF06969 HemN C-terminal domain NRL09_03435 PF04055 Radical SAM superfamily NRL09_03440 PF01725 Ham1 family NRL09_03445 PF07690 Major Facilitator Superfamily NRL09_03450 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NRL09_03450 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NRL09_03460 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_03460 PF01610 Transposase NRL09_03460 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_03465 PF01957 NfeD-like C-terminal, partner-binding NRL09_03470 PF01145 SPFH domain / Band 7 family NRL09_03470 PF16200 C-terminal region of band_7 NRL09_03475 PF10414 Sirohaem synthase dimerisation region NRL09_03475 PF14824 Sirohaem biosynthesis protein central NRL09_03475 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NRL09_03480 PF01507 Phosphoadenosine phosphosulfate reductase family NRL09_03485 PF00009 Elongation factor Tu GTP binding domain NRL09_03490 PF03600 Citrate transporter NRL09_03490 PF02080 TrkA-C domain NRL09_03500 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_03500 PF01610 Transposase NRL09_03500 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_03510 PF13676 TIR domain NRL09_03530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL09_03530 PF08447 PAS fold NRL09_03540 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_03540 PF01610 Transposase NRL09_03540 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_03555 PF00005 ABC transporter NRL09_03570 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) NRL09_03585 PF00719 Inorganic pyrophosphatase NRL09_03590 PF01225 Mur ligase family, catalytic domain NRL09_03590 PF08245 Mur ligase middle domain NRL09_03590 PF02875 Mur ligase family, glutamate ligase domain NRL09_03595 PF02441 Flavoprotein NRL09_03600 PF00440 Bacterial regulatory proteins, tetR family NRL09_03605 PF00156 Phosphoribosyl transferase domain NRL09_03610 PF00005 ABC transporter NRL09_03615 PF01061 ABC-2 type transporter NRL09_03625 PF02569 Pantoate-beta-alanine ligase NRL09_03630 PF02548 Ketopantoate hydroxymethyltransferase NRL09_03635 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NRL09_03640 PF12626 Polymerase A arginine-rich C-terminus NRL09_03640 PF01743 Poly A polymerase head domain NRL09_03640 PF12627 Probable RNA and SrmB- binding site of polymerase A NRL09_03645 PF00749 tRNA synthetases class I (E and Q), catalytic domain NRL09_03650 PF01258 Prokaryotic dksA/traR C4-type zinc finger NRL09_03655 PF17746 SfsA N-terminal OB domain NRL09_03655 PF03749 Sugar fermentation stimulation protein RE domain NRL09_03665 PF00270 DEAD/DEAH box helicase NRL09_03665 PF04408 Helicase associated domain (HA2) NRL09_03665 PF00271 Helicase conserved C-terminal domain NRL09_03665 PF08482 ATP-dependent helicase C-terminal NRL09_03670 PF00912 Transglycosylase NRL09_03670 PF00905 Penicillin binding protein transpeptidase domain NRL09_03670 PF14814 Bifunctional transglycosylase second domain NRL09_03675 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRL09_03680 PF00893 Small Multidrug Resistance protein NRL09_03685 PF00893 Small Multidrug Resistance protein NRL09_03690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_03690 PF03466 LysR substrate binding domain NRL09_03700 PF01569 PAP2 superfamily NRL09_03715 PF00202 Aminotransferase class-III NRL09_03720 PF00654 Voltage gated chloride channel NRL09_03730 PF01521 Iron-sulphur cluster biosynthesis NRL09_03765 PF02867 Ribonucleotide reductase, barrel domain NRL09_03765 PF00317 Ribonucleotide reductase, all-alpha domain NRL09_03765 PF08343 Ribonucleotide reductase N-terminal NRL09_03775 PF02562 PhoH-like protein NRL09_03775 PF13638 PIN domain NRL09_03785 PF00005 ABC transporter NRL09_03790 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_03810 PF00694 Aconitase C-terminal domain NRL09_03815 PF00330 Aconitase family (aconitate hydratase) NRL09_03820 PF00180 Isocitrate/isopropylmalate dehydrogenase NRL09_03825 PF00682 HMGL-like NRL09_03825 PF08502 LeuA allosteric (dimerisation) domain NRL09_03835 PF01569 PAP2 superfamily NRL09_03850 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NRL09_03850 PF00205 Thiamine pyrophosphate enzyme, central domain NRL09_03850 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRL09_03855 PF10369 Small subunit of acetolactate synthase NRL09_03860 PF01610 Transposase NRL09_03860 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_03860 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_03865 PF01515 Phosphate acetyl/butaryl transferase NRL09_03865 PF07085 DRTGG domain NRL09_03870 PF00871 Acetokinase family NRL09_03875 PF04217 Protein of unknown function, DUF412 NRL09_03880 PF03887 YfbU domain NRL09_03885 PF00578 AhpC/TSA family NRL09_03890 PF01842 ACT domain NRL09_03895 PF00701 Dihydrodipicolinate synthetase family NRL09_03900 PF06804 NlpB/DapX lipoprotein NRL09_03905 PF01259 SAICAR synthetase NRL09_03915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_03915 PF03466 LysR substrate binding domain NRL09_03920 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) NRL09_03940 PF00072 Response regulator receiver domain NRL09_03940 PF00989 PAS fold NRL09_03940 PF01627 Hpt domain NRL09_03940 PF18415 Histidine kinase receptor ArcB trans-membrane domain NRL09_03940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_03940 PF00512 His Kinase A (phospho-acceptor) domain NRL09_03945 PF01966 HD domain NRL09_03955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_03955 PF00512 His Kinase A (phospho-acceptor) domain NRL09_03955 PF09456 RcsC Alpha-Beta-Loop (ABL) NRL09_03955 PF00072 Response regulator receiver domain NRL09_03960 PF00072 Response regulator receiver domain NRL09_03960 PF01627 Hpt domain NRL09_03960 PF00512 His Kinase A (phospho-acceptor) domain NRL09_03960 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL09_03960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_03965 PF00563 EAL domain NRL09_03965 PF00990 Diguanylate cyclase, GGDEF domain NRL09_03965 PF03707 Bacterial signalling protein N terminal repeat NRL09_03970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL09_03975 PF01610 Transposase NRL09_03975 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_03975 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_03980 PF02357 Transcription termination factor nusG NRL09_03985 PF03180 NLPA lipoprotein NRL09_03990 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_03995 PF00005 ABC transporter NRL09_03995 PF09383 NIL domain NRL09_04005 PF00480 ROK family NRL09_04010 PF08331 Domain of unknown function (DUF1730) NRL09_04015 PF03853 YjeF-related protein N-terminus NRL09_04015 PF01256 Carbohydrate kinase NRL09_04020 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NRL09_04025 PF01520 N-acetylmuramoyl-L-alanine amidase NRL09_04030 PF08676 MutL C terminal dimerisation domain NRL09_04030 PF01119 DNA mismatch repair protein, C-terminal domain NRL09_04040 PF17209 Hfq protein NRL09_04045 PF16360 GTP-binding GTPase Middle Region NRL09_04045 PF13167 GTP-binding GTPase N-terminal NRL09_04045 PF01926 50S ribosome-binding GTPase NRL09_04050 PF01145 SPFH domain / Band 7 family NRL09_04050 PF12221 Bacterial membrane protein N terminal NRL09_04055 PF01145 SPFH domain / Band 7 family NRL09_04060 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) NRL09_04065 PF00348 Polyprenyl synthetase NRL09_04070 PF00829 Ribosomal prokaryotic L21 protein NRL09_04075 PF01016 Ribosomal L27 protein NRL09_04080 PF01018 GTP1/OBG NRL09_04080 PF01926 50S ribosome-binding GTPase NRL09_04085 PF07670 Nucleoside recognition NRL09_04095 PF00296 Luciferase-like monooxygenase NRL09_04105 PF00149 Calcineurin-like phosphoesterase NRL09_04110 PF04379 ApaG domain NRL09_04115 PF00398 Ribosomal RNA adenine dimethylase NRL09_04120 PF04166 Pyridoxal phosphate biosynthetic protein PdxA NRL09_04125 PF00639 PPIC-type PPIASE domain NRL09_04125 PF09312 SurA N-terminal domain NRL09_04130 PF04453 LPS transport system D NRL09_04130 PF03968 OstA-like protein NRL09_04135 PF01636 Phosphotransferase enzyme family NRL09_04140 PF00483 Nucleotidyl transferase NRL09_04145 PF00226 DnaJ domain NRL09_04145 PF05099 Tellurite resistance protein TerB NRL09_04150 PF00860 Permease family NRL09_04160 PF12848 ABC transporter NRL09_04160 PF00005 ABC transporter NRL09_04165 PF01464 Transglycosylase SLT domain NRL09_04170 PF00535 Glycosyl transferase family 2 NRL09_04180 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase NRL09_04185 PF01370 NAD dependent epimerase/dehydratase family NRL09_04190 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NRL09_04190 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NRL09_04190 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NRL09_04200 PF00005 ABC transporter NRL09_04205 PF01032 FecCD transport family NRL09_04215 PF06228 Haem utilisation ChuX/HutX NRL09_04220 PF01243 Pyridoxamine 5'-phosphate oxidase NRL09_04240 PF07715 TonB-dependent Receptor Plug Domain NRL09_04240 PF00593 TonB dependent receptor NRL09_04245 PF12832 MFS_1 like family NRL09_04250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_04250 PF00512 His Kinase A (phospho-acceptor) domain NRL09_04250 PF00989 PAS fold NRL09_04255 PF00704 Glycosyl hydrolases family 18 NRL09_04255 PF08329 Chitinase A, N-terminal domain NRL09_04260 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_04260 PF01610 Transposase NRL09_04260 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_04265 PF13847 Methyltransferase domain NRL09_04270 PF00027 Cyclic nucleotide-binding domain NRL09_04270 PF13545 Crp-like helix-turn-helix domain NRL09_04275 PF02566 OsmC-like protein NRL09_04290 PF00485 Phosphoribulokinase / Uridine kinase family NRL09_04295 PF06794 Uncharacterised protein family (UPF0270) NRL09_04300 PF00563 EAL domain NRL09_04300 PF01590 GAF domain NRL09_04300 PF00990 Diguanylate cyclase, GGDEF domain NRL09_04300 PF00360 Phytochrome region NRL09_04305 PF00561 alpha/beta hydrolase fold NRL09_04310 PF00072 Response regulator receiver domain NRL09_04310 PF01584 CheW-like domain NRL09_04320 PF09526 Probable metal-binding protein (DUF2387) NRL09_04325 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRL09_04330 PF04102 SlyX NRL09_04340 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NRL09_04340 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRL09_04345 PF02954 Bacterial regulatory protein, Fis family NRL09_04345 PF00072 Response regulator receiver domain NRL09_04345 PF00158 Sigma-54 interaction domain NRL09_04365 PF00149 Calcineurin-like phosphoesterase NRL09_04365 PF02872 5'-nucleotidase, C-terminal domain NRL09_04375 PF00772 DnaB-like helicase N terminal domain NRL09_04375 PF03796 DnaB-like helicase C terminal domain NRL09_04380 PF00842 Alanine racemase, C-terminal domain NRL09_04380 PF01168 Alanine racemase, N-terminal domain NRL09_04385 PF18327 Proline utilization A proline dehydrogenase N-terminal domain NRL09_04385 PF00171 Aldehyde dehydrogenase family NRL09_04385 PF01619 Proline dehydrogenase NRL09_04385 PF14850 DNA-binding domain of Proline dehydrogenase NRL09_04395 PF00206 Lyase NRL09_04395 PF10415 Fumarase C C-terminus NRL09_04400 PF12801 4Fe-4S binding domain NRL09_04400 PF04205 FMN-binding domain NRL09_04405 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NRL09_04405 PF18764 Nitrous oxide reductase propeller repeat NRL09_04405 PF18793 Nitrous oxide reductase propeller repeat 2 NRL09_04410 PF05048 Periplasmic copper-binding protein (NosD) NRL09_04415 PF00005 ABC transporter NRL09_04420 PF12679 ABC-2 family transporter protein NRL09_04425 PF05573 NosL NRL09_04430 PF02416 mttA/Hcf106 family NRL09_04435 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NRL09_04440 PF03575 Peptidase family S51 NRL09_04445 PF02554 Carbon starvation protein CstA NRL09_04445 PF13722 5TM C-terminal transporter carbon starvation CstA NRL09_04450 PF04397 LytTr DNA-binding domain NRL09_04450 PF00072 Response regulator receiver domain NRL09_04455 PF07694 5TMR of 5TMR-LYT NRL09_04455 PF06580 Histidine kinase NRL09_04465 PF00563 EAL domain NRL09_04465 PF01590 GAF domain NRL09_04465 PF00990 Diguanylate cyclase, GGDEF domain NRL09_04465 PF00989 PAS fold NRL09_04470 PF13808 DDE_Tnp_1-associated NRL09_04470 PF01609 Transposase DDE domain NRL09_04495 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NRL09_04495 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NRL09_04500 PF03466 LysR substrate binding domain NRL09_04500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_04505 PF01810 LysE type translocator NRL09_04510 PF01136 Peptidase family U32 NRL09_04510 PF12392 Collagenase NRL09_04520 PF06906 Protein of unknown function (DUF1272) NRL09_04530 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NRL09_04530 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NRL09_04535 PF02805 Metal binding domain of Ada NRL09_04535 PF06029 AlkA N-terminal domain NRL09_04535 PF00730 HhH-GPD superfamily base excision DNA repair protein NRL09_04535 PF12833 Helix-turn-helix domain NRL09_04540 PF02074 Carboxypeptidase Taq (M32) metallopeptidase NRL09_04565 PF00106 short chain dehydrogenase NRL09_04570 PF03573 outer membrane porin, OprD family NRL09_04575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL09_04585 PF02447 GntP family permease NRL09_04590 PF01370 NAD dependent epimerase/dehydratase family NRL09_04595 PF01261 Xylose isomerase-like TIM barrel NRL09_04600 PF00596 Class II Aldolase and Adducin N-terminal domain NRL09_04605 PF17042 Nucleotide-binding C-terminal domain NRL09_04605 PF07005 Sugar-binding N-terminal domain NRL09_04610 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NRL09_04610 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NRL09_04615 PF00455 DeoR C terminal sensor domain NRL09_04615 PF08220 DeoR-like helix-turn-helix domain NRL09_04625 PF07995 Glucose / Sorbosone dehydrogenase NRL09_04630 PF03976 Polyphosphate kinase 2 (PPK2) NRL09_04655 PF01817 Chorismate mutase type II NRL09_04655 PF00800 Prephenate dehydratase NRL09_04680 PF08349 Protein of unknown function (DUF1722) NRL09_04685 PF13411 MerR HTH family regulatory protein NRL09_04690 PF00875 DNA photolyase NRL09_04690 PF03441 FAD binding domain of DNA photolyase NRL09_04700 PF00106 short chain dehydrogenase NRL09_04740 PF00210 Ferritin-like domain NRL09_04745 PF03063 Prismane/CO dehydrogenase family NRL09_04750 PF00970 Oxidoreductase FAD-binding domain NRL09_04750 PF00042 Globin NRL09_04750 PF00175 Oxidoreductase NAD-binding domain NRL09_04755 PF16363 GDP-mannose 4,6 dehydratase NRL09_04770 PF00873 AcrB/AcrD/AcrF family NRL09_04775 PF00529 HlyD membrane-fusion protein of T1SS NRL09_04775 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRL09_04780 PF00486 Transcriptional regulatory protein, C terminal NRL09_04780 PF00072 Response regulator receiver domain NRL09_04785 PF00512 His Kinase A (phospho-acceptor) domain NRL09_04785 PF00672 HAMP domain NRL09_04785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_04790 PF01740 STAS domain NRL09_04790 PF00916 Sulfate permease family NRL09_04795 PF01965 DJ-1/PfpI family NRL09_04800 PF02558 Ketopantoate reductase PanE/ApbA NRL09_04800 PF08546 Ketopantoate reductase PanE/ApbA C terminal NRL09_04805 PF04461 Protein of unknown function (DUF520) NRL09_04810 PF03502 Nucleoside-specific channel-forming protein, Tsx NRL09_04815 PF07690 Major Facilitator Superfamily NRL09_04825 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NRL09_04835 PF05175 Methyltransferase small domain NRL09_04840 PF01722 BolA-like protein NRL09_04845 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) NRL09_04845 PF11973 NQRA C-terminal domain NRL09_04850 PF03116 NQR2, RnfD, RnfE family NRL09_04855 PF04205 FMN-binding domain NRL09_04860 PF02508 Rnf-Nqr subunit, membrane protein NRL09_04865 PF02508 Rnf-Nqr subunit, membrane protein NRL09_04870 PF00175 Oxidoreductase NAD-binding domain NRL09_04870 PF00970 Oxidoreductase FAD-binding domain NRL09_04870 PF00111 2Fe-2S iron-sulfur cluster binding domain NRL09_04875 PF02424 ApbE family NRL09_04890 PF00817 impB/mucB/samB family NRL09_04890 PF11799 impB/mucB/samB family C-terminal domain NRL09_04890 PF11798 IMS family HHH motif NRL09_04895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL09_04895 PF00672 HAMP domain NRL09_04900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_04900 PF03466 LysR substrate binding domain NRL09_04915 PF01728 FtsJ-like methyltransferase NRL09_04915 PF18125 RlmM ferredoxin-like domain NRL09_04925 PF18324 Hypothetical protein TT1725 NRL09_04925 PF00180 Isocitrate/isopropylmalate dehydrogenase NRL09_04930 PF01367 5'-3' exonuclease, C-terminal SAM fold NRL09_04930 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NRL09_04935 PF11892 Domain of unknown function (DUF3412) NRL09_04935 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases NRL09_04935 PF03641 Possible lysine decarboxylase NRL09_04940 PF00990 Diguanylate cyclase, GGDEF domain NRL09_04950 PF14489 QueF-like protein NRL09_04950 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term NRL09_04955 PF07348 Syd protein (SUKH-2) NRL09_04960 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) NRL09_04985 PF04287 tRNA pseudouridine synthase C NRL09_04990 PF00849 RNA pseudouridylate synthase NRL09_04995 PF00258 Flavodoxin NRL09_05005 PF02264 LamB porin NRL09_05010 PF07148 Maltose operon periplasmic protein precursor (MalM) NRL09_05015 PF02378 Phosphotransferase system, EIIC NRL09_05015 PF00367 phosphotransferase system, EIIB NRL09_05020 PF11944 Protein of unknown function (DUF3461) NRL09_05025 PF14602 Hexapeptide repeat of succinyl-transferase NRL09_05025 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal NRL09_05025 PF00132 Bacterial transferase hexapeptide (six repeats) NRL09_05030 PF08335 GlnD PII-uridylyltransferase NRL09_05030 PF01966 HD domain NRL09_05030 PF01909 Nucleotidyltransferase domain NRL09_05030 PF01842 ACT domain NRL09_05035 PF00557 Metallopeptidase family M24 NRL09_05040 PF00318 Ribosomal protein S2 NRL09_05045 PF00889 Elongation factor TS NRL09_05050 PF00696 Amino acid kinase family NRL09_05055 PF01765 Ribosome recycling factor NRL09_05060 PF01255 Putative undecaprenyl diphosphate synthase NRL09_05070 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NRL09_05070 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NRL09_05070 PF13288 DXP reductoisomerase C-terminal domain NRL09_05075 PF02163 Peptidase family M50 NRL09_05075 PF17820 PDZ domain NRL09_05080 PF01103 Surface antigen NRL09_05080 PF07244 Surface antigen variable number repeat NRL09_05085 PF03938 Outer membrane protein (OmpH-like) NRL09_05090 PF00132 Bacterial transferase hexapeptide (six repeats) NRL09_05090 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD NRL09_05095 PF07977 FabA-like domain NRL09_05100 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 NRL09_05100 PF00132 Bacterial transferase hexapeptide (six repeats) NRL09_05105 PF02684 Lipid-A-disaccharide synthetase NRL09_05110 PF01351 Ribonuclease HII NRL09_05115 PF07733 Bacterial DNA polymerase III alpha NTPase domain NRL09_05115 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NRL09_05115 PF14579 Helix-hairpin-helix motif NRL09_05115 PF02811 PHP domain NRL09_05115 PF01336 OB-fold nucleic acid binding domain NRL09_05120 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NRL09_05130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_05130 PF03466 LysR substrate binding domain NRL09_05140 PF13520 Amino acid permease NRL09_05160 PF01431 Peptidase family M13 NRL09_05160 PF05649 Peptidase family M13 NRL09_05165 PF01171 PP-loop family NRL09_05165 PF09179 TilS substrate binding domain NRL09_05165 PF11734 TilS substrate C-terminal domain NRL09_05170 PF00990 Diguanylate cyclase, GGDEF domain NRL09_05175 PF00999 Sodium/hydrogen exchanger family NRL09_05175 PF02080 TrkA-C domain NRL09_05175 PF02254 TrkA-N domain NRL09_05195 PF00196 Bacterial regulatory proteins, luxR family NRL09_05195 PF00072 Response regulator receiver domain NRL09_05205 PF00128 Alpha amylase, catalytic domain NRL09_05220 PF00535 Glycosyl transferase family 2 NRL09_05235 PF01471 Putative peptidoglycan binding domain NRL09_05235 PF03734 L,D-transpeptidase catalytic domain NRL09_05240 PF05951 Bacterial protein of unknown function (DUF882) NRL09_05250 PF03458 UPF0126 domain NRL09_05260 PF06470 SMC proteins Flexible Hinge Domain NRL09_05260 PF02463 RecF/RecN/SMC N terminal domain NRL09_05265 PF04354 ZipA, C-terminal FtsZ-binding domain NRL09_05270 PF03120 NAD-dependent DNA ligase OB-fold domain NRL09_05270 PF01653 NAD-dependent DNA ligase adenylation domain NRL09_05270 PF00533 BRCA1 C Terminus (BRCT) domain NRL09_05270 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NRL09_05270 PF12826 Helix-hairpin-helix motif NRL09_05280 PF03477 ATP cone domain NRL09_05280 PF13597 Anaerobic ribonucleoside-triphosphate reductase NRL09_05290 PF01679 Proteolipid membrane potential modulator NRL09_05310 PF00529 HlyD membrane-fusion protein of T1SS NRL09_05310 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRL09_05315 PF01047 MarR family NRL09_05320 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain NRL09_05320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_05320 PF00989 PAS fold NRL09_05320 PF17203 Single cache domain 3 NRL09_05325 PF12431 Transcriptional regulator NRL09_05325 PF00072 Response regulator receiver domain NRL09_05335 PF00248 Aldo/keto reductase family NRL09_05345 PF00892 EamA-like transporter family NRL09_05355 PF00171 Aldehyde dehydrogenase family NRL09_05360 PF01590 GAF domain NRL09_05360 PF00158 Sigma-54 interaction domain NRL09_05360 PF02954 Bacterial regulatory protein, Fis family NRL09_05365 PF17158 Membrane-associated sensor, integral membrane domain NRL09_05365 PF00990 Diguanylate cyclase, GGDEF domain NRL09_05370 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRL09_05375 PF00072 Response regulator receiver domain NRL09_05375 PF00486 Transcriptional regulatory protein, C terminal NRL09_05380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_05380 PF00512 His Kinase A (phospho-acceptor) domain NRL09_05380 PF00989 PAS fold NRL09_05380 PF11808 Phosphate regulon sensor protein PhoR NRL09_05385 PF12849 PBP superfamily domain NRL09_05390 PF01435 Peptidase family M48 NRL09_05400 PF00480 ROK family NRL09_05405 PF03932 CutC family NRL09_05425 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRL09_05425 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NRL09_05430 PF00005 ABC transporter NRL09_05445 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL09_05450 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_05455 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_05460 PF00005 ABC transporter NRL09_05470 PF00293 NUDIX domain NRL09_05475 PF08534 Redoxin NRL09_05480 PF01699 Sodium/calcium exchanger protein NRL09_05485 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NRL09_05485 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NRL09_05490 PF01235 Sodium:alanine symporter family NRL09_05500 PF00860 Permease family NRL09_05505 PF00072 Response regulator receiver domain NRL09_05505 PF00990 Diguanylate cyclase, GGDEF domain NRL09_05510 PF10692 Protein of unknown function (DUF2498) NRL09_05515 PF01554 MatE NRL09_05520 PF12833 Helix-turn-helix domain NRL09_05525 PF00390 Malic enzyme, N-terminal domain NRL09_05525 PF03949 Malic enzyme, NAD binding domain NRL09_05530 PF00691 OmpA family NRL09_05530 PF01389 OmpA-like transmembrane domain NRL09_05535 PF01389 OmpA-like transmembrane domain NRL09_05535 PF00691 OmpA family NRL09_05540 PF01389 OmpA-like transmembrane domain NRL09_05540 PF00691 OmpA family NRL09_05560 PF00209 Sodium:neurotransmitter symporter family NRL09_05565 PF01734 Patatin-like phospholipase NRL09_05570 PF00990 Diguanylate cyclase, GGDEF domain NRL09_05570 PF17158 Membrane-associated sensor, integral membrane domain NRL09_05580 PF00873 AcrB/AcrD/AcrF family NRL09_05585 PF04055 Radical SAM superfamily NRL09_05585 PF11842 Domain of unknown function (DUF3362) NRL09_05585 PF08497 Radical SAM N-terminal NRL09_05605 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NRL09_05610 PF02075 Crossover junction endodeoxyribonuclease RuvC NRL09_05625 PF01551 Peptidase family M23 NRL09_05625 PF10145 Phage-related minor tail protein NRL09_05625 PF01464 Transglycosylase SLT domain NRL09_05640 PF13091 PLD-like domain NRL09_05640 PF13396 Phospholipase_D-nuclease N-terminal NRL09_05650 PF01842 ACT domain NRL09_05650 PF00551 Formyl transferase NRL09_05655 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NRL09_05665 PF00085 Thioredoxin NRL09_05670 PF01648 4'-phosphopantetheinyl transferase superfamily NRL09_05680 PF00877 NlpC/P60 family NRL09_05685 PF01610 Transposase NRL09_05685 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_05685 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_05690 PF05971 RNA methyltransferase NRL09_05695 PF01575 MaoC like domain NRL09_05705 PF01476 LysM domain NRL09_05705 PF03734 L,D-transpeptidase catalytic domain NRL09_05705 PF17969 L,D-transpeptidase C-terminal domain NRL09_05735 PF10725 Protein of unknown function (DUF2517) NRL09_05740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_05740 PF00512 His Kinase A (phospho-acceptor) domain NRL09_05740 PF01627 Hpt domain NRL09_05740 PF00989 PAS fold NRL09_05740 PF00072 Response regulator receiver domain NRL09_05740 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL09_05745 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase NRL09_05750 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NRL09_05750 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRL09_05755 PF02690 Na+/Pi-cotransporter NRL09_05765 PF13520 Amino acid permease NRL09_05770 PF00324 Amino acid permease NRL09_05780 PF00202 Aminotransferase class-III NRL09_05785 PF00171 Aldehyde dehydrogenase family NRL09_05790 PF07883 Cupin domain NRL09_05790 PF01381 Helix-turn-helix NRL09_05795 PF01266 FAD dependent oxidoreductase NRL09_05825 PF00158 Sigma-54 interaction domain NRL09_05825 PF00072 Response regulator receiver domain NRL09_05825 PF02954 Bacterial regulatory protein, Fis family NRL09_05830 PF00999 Sodium/hydrogen exchanger family NRL09_05830 PF02254 TrkA-N domain NRL09_05845 PF04381 Putative exonuclease, RdgC NRL09_05850 PF00583 Acetyltransferase (GNAT) family NRL09_05855 PF00149 Calcineurin-like phosphoesterase NRL09_05855 PF12320 Type 5 capsule protein repressor C-terminal domain NRL09_05865 PF01292 Prokaryotic cytochrome b561 NRL09_05870 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NRL09_05875 PF05524 PEP-utilising enzyme, N-terminal NRL09_05875 PF00391 PEP-utilising enzyme, mobile domain NRL09_05875 PF02896 PEP-utilising enzyme, TIM barrel domain NRL09_05880 PF00381 PTS HPr component phosphorylation site NRL09_05885 PF00291 Pyridoxal-phosphate dependent enzyme NRL09_05890 PF01434 Peptidase family M41 NRL09_05890 PF06480 FtsH Extracellular NRL09_05890 PF17862 AAA+ lid domain NRL09_05890 PF00004 ATPase family associated with various cellular activities (AAA) NRL09_05900 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NRL09_05900 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NRL09_05905 PF01980 tRNA-methyltransferase O NRL09_05905 PF18389 TrmO C-terminal domain NRL09_05925 PF00664 ABC transporter transmembrane region NRL09_05925 PF00005 ABC transporter NRL09_05930 PF00664 ABC transporter transmembrane region NRL09_05930 PF00005 ABC transporter NRL09_05945 PF00486 Transcriptional regulatory protein, C terminal NRL09_05945 PF00072 Response regulator receiver domain NRL09_05955 PF03737 Aldolase/RraA NRL09_05970 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) NRL09_05975 PF00588 SpoU rRNA Methylase family NRL09_05980 PF01842 ACT domain NRL09_05980 PF03447 Homoserine dehydrogenase, NAD binding domain NRL09_05980 PF00742 Homoserine dehydrogenase NRL09_05980 PF13840 ACT domain NRL09_05980 PF00696 Amino acid kinase family NRL09_05985 PF00288 GHMP kinases N terminal domain NRL09_05985 PF08544 GHMP kinases C terminal NRL09_05990 PF00291 Pyridoxal-phosphate dependent enzyme NRL09_05990 PF14821 Threonine synthase N terminus NRL09_06035 PF01609 Transposase DDE domain NRL09_06050 PF02028 BCCT, betaine/carnitine/choline family transporter NRL09_06060 PF05114 Protein of unknown function (DUF692) NRL09_06085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL09_06085 PF08447 PAS fold NRL09_06085 PF13426 PAS domain NRL09_06100 PF04632 Fusaric acid resistance protein family NRL09_06105 PF03205 Molybdopterin guanine dinucleotide synthesis protein B NRL09_06110 PF12804 MobA-like NTP transferase domain NRL09_06115 PF00390 Malic enzyme, N-terminal domain NRL09_06115 PF03949 Malic enzyme, NAD binding domain NRL09_06125 PF00860 Permease family NRL09_06135 PF10282 Lactonase, 7-bladed beta-propeller NRL09_06145 PF01810 LysE type translocator NRL09_06150 PF00239 Resolvase, N terminal domain NRL09_06150 PF02796 Helix-turn-helix domain of resolvase NRL09_06155 PF01609 Transposase DDE domain NRL09_06155 PF13006 Insertion element 4 transposase N-terminal NRL09_06185 PF13362 Toprim domain NRL09_06185 PF08401 Domain of unknown function (DUF1738) NRL09_06185 PF18818 Metallopeptidase superfamily domain NRL09_06210 PF00589 Phage integrase family NRL09_06210 PF13356 Arm DNA-binding domain NRL09_06215 PF00924 Mechanosensitive ion channel NRL09_06215 PF12795 Mechanosensitive ion channel porin domain NRL09_06215 PF12794 Mechanosensitive ion channel inner membrane domain 1 NRL09_06220 PF00224 Pyruvate kinase, barrel domain NRL09_06220 PF02887 Pyruvate kinase, alpha/beta domain NRL09_06225 PF08007 Cupin superfamily protein NRL09_06230 PF00206 Lyase NRL09_06230 PF08328 Adenylosuccinate lyase C-terminal NRL09_06235 PF04356 Protein of unknown function (DUF489) NRL09_06245 PF00293 NUDIX domain NRL09_06250 PF00849 RNA pseudouridylate synthase NRL09_06255 PF00583 Acetyltransferase (GNAT) family NRL09_06290 PF00180 Isocitrate/isopropylmalate dehydrogenase NRL09_06300 PF00291 Pyridoxal-phosphate dependent enzyme NRL09_06305 PF03466 LysR substrate binding domain NRL09_06305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_06310 PF00816 H-NS histone family NRL09_06315 PF00793 DAHP synthetase I family NRL09_06320 PF08021 Siderophore-interacting FAD-binding domain NRL09_06320 PF04954 Siderophore-interacting protein NRL09_06325 PF02321 Outer membrane efflux protein NRL09_06330 PF00005 ABC transporter NRL09_06330 PF02687 FtsX-like permease family NRL09_06330 PF12704 MacB-like periplasmic core domain NRL09_06335 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRL09_06345 PF02463 RecF/RecN/SMC N terminal domain NRL09_06350 PF17158 Membrane-associated sensor, integral membrane domain NRL09_06350 PF00990 Diguanylate cyclase, GGDEF domain NRL09_06355 PF01513 ATP-NAD kinase NRL09_06360 PF01025 GrpE NRL09_06365 PF00012 Hsp70 protein NRL09_06370 PF00684 DnaJ central domain NRL09_06370 PF00226 DnaJ domain NRL09_06370 PF01556 DnaJ C terminal domain NRL09_06375 PF01610 Transposase NRL09_06375 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_06375 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_06380 PF11471 Maltoporin periplasmic N-terminal extension NRL09_06380 PF02264 LamB porin NRL09_06385 PF00294 pfkB family carbohydrate kinase NRL09_06390 PF00367 phosphotransferase system, EIIB NRL09_06390 PF02378 Phosphotransferase system, EIIC NRL09_06395 PF08244 Glycosyl hydrolases family 32 C terminal NRL09_06395 PF00251 Glycosyl hydrolases family 32 N-terminal domain NRL09_06400 PF00356 Bacterial regulatory proteins, lacI family NRL09_06400 PF13407 Periplasmic binding protein domain NRL09_06405 PF02308 MgtC family NRL09_06415 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL09_06425 PF01022 Bacterial regulatory protein, arsR family NRL09_06430 PF04143 Sulphur transport NRL09_06445 PF00873 AcrB/AcrD/AcrF family NRL09_06450 PF03707 Bacterial signalling protein N terminal repeat NRL09_06450 PF00990 Diguanylate cyclase, GGDEF domain NRL09_06450 PF00563 EAL domain NRL09_06455 PF10437 Bacterial lipoate protein ligase C-terminus NRL09_06455 PF03099 Biotin/lipoate A/B protein ligase family NRL09_06470 PF00873 AcrB/AcrD/AcrF family NRL09_06475 PF00529 HlyD membrane-fusion protein of T1SS NRL09_06475 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRL09_06485 PF03372 Endonuclease/Exonuclease/phosphatase family NRL09_06495 PF00072 Response regulator receiver domain NRL09_06500 PF00011 Hsp20/alpha crystallin family NRL09_06505 PF02424 ApbE family NRL09_06510 PF00127 Copper binding proteins, plastocyanin/azurin family NRL09_06525 PF01047 MarR family NRL09_06535 PF01156 Inosine-uridine preferring nucleoside hydrolase NRL09_06545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_06545 PF03466 LysR substrate binding domain NRL09_06550 PF02627 Carboxymuconolactone decarboxylase family NRL09_06555 PF06481 COX Aromatic Rich Motif NRL09_06555 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NRL09_06560 PF00115 Cytochrome C and Quinol oxidase polypeptide I NRL09_06565 PF00510 Cytochrome c oxidase subunit III NRL09_06570 PF03626 Prokaryotic Cytochrome C oxidase subunit IV NRL09_06575 PF01040 UbiA prenyltransferase family NRL09_06580 PF07690 Major Facilitator Superfamily NRL09_06585 PF07237 Protein of unknown function (DUF1428) NRL09_06590 PF02668 Taurine catabolism dioxygenase TauD, TfdA family NRL09_06595 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_06600 PF00005 ABC transporter NRL09_06605 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NRL09_06615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_06615 PF03466 LysR substrate binding domain NRL09_06680 PF01609 Transposase DDE domain NRL09_06680 PF13006 Insertion element 4 transposase N-terminal NRL09_06685 PF00290 Tryptophan synthase alpha chain NRL09_06690 PF00291 Pyridoxal-phosphate dependent enzyme NRL09_06695 PF00218 Indole-3-glycerol phosphate synthase NRL09_06695 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NRL09_06700 PF02885 Glycosyl transferase family, helical bundle domain NRL09_06700 PF00591 Glycosyl transferase family, a/b domain NRL09_06705 PF00117 Glutamine amidotransferase class-I NRL09_06705 PF02885 Glycosyl transferase family, helical bundle domain NRL09_06705 PF00591 Glycosyl transferase family, a/b domain NRL09_06715 PF00425 chorismate binding enzyme NRL09_06715 PF04715 Anthranilate synthase component I, N terminal region NRL09_06720 PF02811 PHP domain NRL09_06725 PF01300 Telomere recombination NRL09_06730 PF02616 Segregation and condensation protein ScpA NRL09_06735 PF04079 Segregation and condensation complex subunit ScpB NRL09_06740 PF00849 RNA pseudouridylate synthase NRL09_06740 PF01479 S4 domain NRL09_06765 PF08361 MAATS-type transcriptional repressor, C-terminal region NRL09_06765 PF00440 Bacterial regulatory proteins, tetR family NRL09_06770 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRL09_06770 PF00529 HlyD membrane-fusion protein of T1SS NRL09_06775 PF00873 AcrB/AcrD/AcrF family NRL09_06780 PF02321 Outer membrane efflux protein NRL09_06845 PF01609 Transposase DDE domain NRL09_06860 PF00589 Phage integrase family NRL09_06860 PF14659 Phage integrase, N-terminal SAM-like domain NRL09_06875 PF00440 Bacterial regulatory proteins, tetR family NRL09_06880 PF02770 Acyl-CoA dehydrogenase, middle domain NRL09_06880 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRL09_06880 PF09317 Domain of unknown function (DUF1974) NRL09_06880 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRL09_06885 PF00873 AcrB/AcrD/AcrF family NRL09_06895 PF02887 Pyruvate kinase, alpha/beta domain NRL09_06895 PF00224 Pyruvate kinase, barrel domain NRL09_06900 PF01380 SIS domain NRL09_06900 PF01418 Helix-turn-helix domain, rpiR family NRL09_06905 PF02685 Glucokinase NRL09_06915 PF01238 Phosphomannose isomerase type I NRL09_06920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_06925 PF00072 Response regulator receiver domain NRL09_06925 PF00486 Transcriptional regulatory protein, C terminal NRL09_06930 PF16363 GDP-mannose 4,6 dehydratase NRL09_06935 PF01609 Transposase DDE domain NRL09_06940 PF01943 Polysaccharide biosynthesis protein NRL09_06945 PF00535 Glycosyl transferase family 2 NRL09_06945 PF01501 Glycosyl transferase family 8 NRL09_06965 PF16363 GDP-mannose 4,6 dehydratase NRL09_06970 PF01370 NAD dependent epimerase/dehydratase family NRL09_06975 PF00293 NUDIX domain NRL09_06980 PF00483 Nucleotidyl transferase NRL09_06980 PF01050 Mannose-6-phosphate isomerase NRL09_06985 PF00535 Glycosyl transferase family 2 NRL09_06990 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NRL09_06990 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NRL09_06990 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NRL09_06990 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NRL09_06995 PF02397 Bacterial sugar transferase NRL09_07000 PF04321 RmlD substrate binding domain NRL09_07005 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase NRL09_07010 PF02706 Chain length determinant protein NRL09_07030 PF04337 Protein of unknown function, DUF480 NRL09_07035 PF00271 Helicase conserved C-terminal domain NRL09_07035 PF00176 SNF2 family N-terminal domain NRL09_07035 PF04434 SWIM zinc finger NRL09_07040 PF05472 DNA replication terminus site-binding protein (Ter protein) NRL09_07050 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family NRL09_07055 PF00676 Dehydrogenase E1 component NRL09_07060 PF02780 Transketolase, C-terminal domain NRL09_07060 PF02779 Transketolase, pyrimidine binding domain NRL09_07065 PF00364 Biotin-requiring enzyme NRL09_07065 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NRL09_07065 PF02817 e3 binding domain NRL09_07070 PF00313 'Cold-shock' DNA-binding domain NRL09_07090 PF01609 Transposase DDE domain NRL09_07115 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRL09_07120 PF00892 EamA-like transporter family NRL09_07130 PF01966 HD domain NRL09_07135 PF00849 RNA pseudouridylate synthase NRL09_07135 PF01479 S4 domain NRL09_07145 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRL09_07150 PF12850 Calcineurin-like phosphoesterase superfamily domain NRL09_07165 PF13144 Chaperone for flagella basal body P-ring formation NRL09_07170 PF01584 CheW-like domain NRL09_07170 PF00072 Response regulator receiver domain NRL09_07175 PF03705 CheR methyltransferase, all-alpha domain NRL09_07175 PF01739 CheR methyltransferase, SAM binding domain NRL09_07180 PF00460 Flagella basal body rod protein NRL09_07185 PF00460 Flagella basal body rod protein NRL09_07185 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRL09_07195 PF07559 Flagellar basal body protein FlaE NRL09_07195 PF00460 Flagella basal body rod protein NRL09_07195 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRL09_07200 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_07200 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_07200 PF01610 Transposase NRL09_07205 PF00460 Flagella basal body rod protein NRL09_07205 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRL09_07210 PF00460 Flagella basal body rod protein NRL09_07210 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRL09_07215 PF02107 Flagellar L-ring protein NRL09_07220 PF02119 Flagellar P-ring protein NRL09_07225 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NRL09_07225 PF10135 Rod binding protein NRL09_07230 PF07196 Flagellin hook IN motif NRL09_07230 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRL09_07240 PF00571 CBS domain NRL09_07240 PF01769 Divalent cation transporter NRL09_07240 PF03448 MgtE intracellular N domain NRL09_07245 PF02541 Ppx/GppA phosphatase family NRL09_07250 PF17941 Polyphosphate kinase C-terminal domain 1 NRL09_07250 PF13089 Polyphosphate kinase N-terminal domain NRL09_07250 PF02503 Polyphosphate kinase middle domain NRL09_07250 PF13090 Polyphosphate kinase C-terminal domain 2 NRL09_07255 PF01842 ACT domain NRL09_07270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_07270 PF13188 PAS domain NRL09_07270 PF00512 His Kinase A (phospho-acceptor) domain NRL09_07275 PF00158 Sigma-54 interaction domain NRL09_07275 PF02954 Bacterial regulatory protein, Fis family NRL09_07275 PF00072 Response regulator receiver domain NRL09_07280 PF01784 NIF3 (NGG1p interacting factor 3) NRL09_07285 PF00551 Formyl transferase NRL09_07290 PF00586 AIR synthase related protein, N-terminal domain NRL09_07290 PF02769 AIR synthase related protein, C-terminal domain NRL09_07305 PF00308 Bacterial dnaA protein NRL09_07310 PF00463 Isocitrate lyase family NRL09_07315 PF01274 Malate synthase NRL09_07330 PF14437 MafB19-like deaminase NRL09_07335 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_07340 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_07345 PF00005 ABC transporter NRL09_07350 PF01895 PhoU domain NRL09_07355 PF00571 CBS domain NRL09_07355 PF01595 Cyclin M transmembrane N-terminal domain NRL09_07355 PF03471 Transporter associated domain NRL09_07365 PF02607 B12 binding domain NRL09_07365 PF00809 Pterin binding enzyme NRL09_07365 PF02574 Homocysteine S-methyltransferase NRL09_07365 PF02310 B12 binding domain NRL09_07365 PF02965 Vitamin B12 dependent methionine synthase, activation domain NRL09_07370 PF13520 Amino acid permease NRL09_07375 PF04116 Fatty acid hydroxylase superfamily NRL09_07380 PF00005 ABC transporter NRL09_07390 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_07395 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL09_07400 PF00990 Diguanylate cyclase, GGDEF domain NRL09_07400 PF08448 PAS fold NRL09_07405 PF01272 Transcription elongation factor, GreA/GreB, C-term NRL09_07405 PF14760 Rnk N-terminus NRL09_07420 PF00245 Alkaline phosphatase NRL09_07425 PF00245 Alkaline phosphatase NRL09_07430 PF01926 50S ribosome-binding GTPase NRL09_07435 PF07690 Major Facilitator Superfamily NRL09_07440 PF00850 Histone deacetylase domain NRL09_07450 PF06733 DEAD_2 NRL09_07450 PF13307 Helicase C-terminal domain NRL09_07455 PF13609 Gram-negative porin NRL09_07465 PF00155 Aminotransferase class I and II NRL09_07470 PF05872 Bacterial protein of unknown function (DUF853) NRL09_07485 PF03772 Competence protein NRL09_07485 PF00753 Metallo-beta-lactamase superfamily NRL09_07490 PF00005 ABC transporter NRL09_07490 PF00664 ABC transporter transmembrane region NRL09_07495 PF02606 Tetraacyldisaccharide-1-P 4'-kinase NRL09_07500 PF03966 Trm112p-like protein NRL09_07505 PF02348 Cytidylyltransferase NRL09_07510 PF00072 Response regulator receiver domain NRL09_07510 PF00196 Bacterial regulatory proteins, luxR family NRL09_07515 PF02151 UvrB/uvrC motif NRL09_07515 PF01541 GIY-YIG catalytic domain NRL09_07515 PF08459 UvrC Helix-hairpin-helix N-terminal NRL09_07520 PF01066 CDP-alcohol phosphatidyltransferase NRL09_07540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_07540 PF03466 LysR substrate binding domain NRL09_07545 PF01979 Amidohydrolase family NRL09_07555 PF08240 Alcohol dehydrogenase GroES-like domain NRL09_07555 PF00107 Zinc-binding dehydrogenase NRL09_07560 PF16925 Tetracyclin repressor-like, C-terminal domain NRL09_07560 PF00440 Bacterial regulatory proteins, tetR family NRL09_07565 PF04226 Transglycosylase associated protein NRL09_07570 PF00149 Calcineurin-like phosphoesterase NRL09_07580 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NRL09_07585 PF09190 DALR domain NRL09_07585 PF01406 tRNA synthetases class I (C) catalytic domain NRL09_07605 PF13808 DDE_Tnp_1-associated NRL09_07605 PF01609 Transposase DDE domain NRL09_07610 PF01609 Transposase DDE domain NRL09_07620 PF01609 Transposase DDE domain NRL09_07645 PF01609 Transposase DDE domain NRL09_07660 PF02463 RecF/RecN/SMC N terminal domain NRL09_07665 PF00990 Diguanylate cyclase, GGDEF domain NRL09_07665 PF13185 GAF domain NRL09_07700 PF01169 Uncharacterized protein family UPF0016 NRL09_07705 PF01253 Translation initiation factor SUI1 NRL09_07715 PF17910 FeoB cytosolic helical domain NRL09_07715 PF07664 Ferrous iron transport protein B C terminus NRL09_07715 PF02421 Ferrous iron transport protein B NRL09_07715 PF07670 Nucleoside recognition NRL09_07725 PF00437 Type II/IV secretion system protein NRL09_07740 PF01032 FecCD transport family NRL09_07745 PF00005 ABC transporter NRL09_07750 PF00793 DAHP synthetase I family NRL09_07755 PF01219 Prokaryotic diacylglycerol kinase NRL09_07760 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NRL09_07760 PF01842 ACT domain NRL09_07760 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRL09_07765 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NRL09_07770 PF01812 5-formyltetrahydrofolate cyclo-ligase family NRL09_07780 PF01113 Dihydrodipicolinate reductase, N-terminus NRL09_07780 PF05173 Dihydrodipicolinate reductase, C-terminus NRL09_07785 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NRL09_07785 PF00117 Glutamine amidotransferase class-I NRL09_07790 PF02142 MGS-like domain NRL09_07790 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NRL09_07790 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NRL09_07795 PF00682 HMGL-like NRL09_07795 PF08502 LeuA allosteric (dimerisation) domain NRL09_07800 PF00990 Diguanylate cyclase, GGDEF domain NRL09_07805 PF07759 Protein of unknown function (DUF1615) NRL09_07835 PF00271 Helicase conserved C-terminal domain NRL09_07835 PF00270 DEAD/DEAH box helicase NRL09_07845 PF14521 Lysine-specific metallo-endopeptidase NRL09_07870 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL09_07875 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_07880 PF00005 ABC transporter NRL09_07885 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL09_07885 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NRL09_07890 PF01493 GXGXG motif NRL09_07890 PF00310 Glutamine amidotransferases class-II NRL09_07890 PF01645 Conserved region in glutamate synthase NRL09_07890 PF04898 Glutamate synthase central domain NRL09_07895 PF04055 Radical SAM superfamily NRL09_07895 PF16199 Radical_SAM C-terminal domain NRL09_07900 PF00005 ABC transporter NRL09_07900 PF00664 ABC transporter transmembrane region NRL09_07900 PF03412 Peptidase C39 family NRL09_07930 PF00665 Integrase core domain NRL09_07935 PF01695 IstB-like ATP binding protein NRL09_07955 PF00324 Amino acid permease NRL09_07965 PF03618 Kinase/pyrophosphorylase NRL09_07970 PF02896 PEP-utilising enzyme, TIM barrel domain NRL09_07970 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NRL09_07970 PF00391 PEP-utilising enzyme, mobile domain NRL09_07975 PF00005 ABC transporter NRL09_08000 PF03180 NLPA lipoprotein NRL09_08010 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NRL09_08010 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRL09_08010 PF11890 Domain of unknown function (DUF3410) NRL09_08015 PF01118 Semialdehyde dehydrogenase, NAD binding domain NRL09_08015 PF02774 Semialdehyde dehydrogenase, dimerisation domain NRL09_08025 PF01416 tRNA pseudouridine synthase NRL09_08030 PF17848 Acetyl-coA carboxylase zinc finger domain NRL09_08030 PF01039 Carboxyl transferase domain NRL09_08035 PF08245 Mur ligase middle domain NRL09_08035 PF02875 Mur ligase family, glutamate ligase domain NRL09_08040 PF05036 Sporulation related domain NRL09_08045 PF04358 DsrC like protein NRL09_08050 PF12805 FUSC-like inner membrane protein yccS NRL09_08055 PF01027 Inhibitor of apoptosis-promoting Bax1 NRL09_08065 PF07715 TonB-dependent Receptor Plug Domain NRL09_08065 PF00593 TonB dependent receptor NRL09_08065 PF07660 Secretin and TonB N terminus short domain NRL09_08075 PF04303 PrpF protein NRL09_08080 PF00330 Aconitase family (aconitate hydratase) NRL09_08080 PF00694 Aconitase C-terminal domain NRL09_08085 PF00285 Citrate synthase, C-terminal domain NRL09_08095 PF08447 PAS fold NRL09_08095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL09_08100 PF00990 Diguanylate cyclase, GGDEF domain NRL09_08100 PF00563 EAL domain NRL09_08100 PF13426 PAS domain NRL09_08105 PF00849 RNA pseudouridylate synthase NRL09_08115 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRL09_08120 PF04209 homogentisate 1,2-dioxygenase NRL09_08130 PF02798 Glutathione S-transferase, N-terminal domain NRL09_08130 PF14497 Glutathione S-transferase, C-terminal domain NRL09_08145 PF13537 Glutamine amidotransferase domain NRL09_08145 PF00733 Asparagine synthase NRL09_08160 PF13344 Haloacid dehalogenase-like hydrolase NRL09_08165 PF00962 Adenosine/AMP deaminase NRL09_08170 PF08240 Alcohol dehydrogenase GroES-like domain NRL09_08170 PF00107 Zinc-binding dehydrogenase NRL09_08175 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NRL09_08180 PF03741 Integral membrane protein TerC family NRL09_08180 PF03471 Transporter associated domain NRL09_08195 PF13183 4Fe-4S dicluster domain NRL09_08195 PF01565 FAD binding domain NRL09_08195 PF02913 FAD linked oxidases, C-terminal domain NRL09_08205 PF03061 Thioesterase superfamily NRL09_08210 PF03880 DbpA RNA binding domain NRL09_08210 PF00270 DEAD/DEAH box helicase NRL09_08210 PF00271 Helicase conserved C-terminal domain NRL09_08220 PF00990 Diguanylate cyclase, GGDEF domain NRL09_08220 PF08447 PAS fold NRL09_08220 PF08448 PAS fold NRL09_08220 PF00563 EAL domain NRL09_08225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_08225 PF03466 LysR substrate binding domain NRL09_08230 PF07690 Major Facilitator Superfamily NRL09_08235 PF13726 Na+-H+ antiporter family NRL09_08235 PF03553 Na+/H+ antiporter family NRL09_08240 PF00929 Exonuclease NRL09_08245 PF12729 Four helix bundle sensory module for signal transduction NRL09_08245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL09_08245 PF00672 HAMP domain NRL09_08250 PF18393 MotY N-terminal domain NRL09_08250 PF00691 OmpA family NRL09_08255 PF00459 Inositol monophosphatase family NRL09_08265 PF02798 Glutathione S-transferase, N-terminal domain NRL09_08265 PF00043 Glutathione S-transferase, C-terminal domain NRL09_08270 PF00043 Glutathione S-transferase, C-terminal domain NRL09_08270 PF02798 Glutathione S-transferase, N-terminal domain NRL09_08280 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_08285 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_08285 PF12911 N-terminal TM domain of oligopeptide transport permease C NRL09_08290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRL09_08290 PF00005 ABC transporter NRL09_08295 PF07690 Major Facilitator Superfamily NRL09_08305 PF05164 Cell division protein ZapA NRL09_08310 PF03695 Uncharacterised protein family (UPF0149) NRL09_08315 PF01494 FAD binding domain NRL09_08320 PF01494 FAD binding domain NRL09_08325 PF01571 Aminomethyltransferase folate-binding domain NRL09_08325 PF08669 Glycine cleavage T-protein C-terminal barrel domain NRL09_08330 PF01597 Glycine cleavage H-protein NRL09_08335 PF02347 Glycine cleavage system P-protein NRL09_08345 PF00975 Thioesterase domain NRL09_08345 PF00550 Phosphopantetheine attachment site NRL09_08345 PF00391 PEP-utilising enzyme, mobile domain NRL09_08345 PF08241 Methyltransferase domain NRL09_08345 PF00668 Condensation domain NRL09_08345 PF13193 AMP-binding enzyme C-terminal domain NRL09_08345 PF00501 AMP-binding enzyme NRL09_08355 PF07690 Major Facilitator Superfamily NRL09_08360 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL09_08360 PF13192 Thioredoxin domain NRL09_08365 PF00578 AhpC/TSA family NRL09_08365 PF10417 C-terminal domain of 1-Cys peroxiredoxin NRL09_08370 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_08370 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_08370 PF01610 Transposase NRL09_08375 PF00571 CBS domain NRL09_08380 PF02547 Queuosine biosynthesis protein NRL09_08385 PF01702 Queuine tRNA-ribosyltransferase NRL09_08390 PF02699 Preprotein translocase subunit NRL09_08395 PF13721 SecD export protein N-terminal TM region NRL09_08395 PF07549 SecD/SecF GG Motif NRL09_08395 PF02355 Protein export membrane protein NRL09_08400 PF02355 Protein export membrane protein NRL09_08400 PF07549 SecD/SecF GG Motif NRL09_08405 PF00581 Rhodanese-like domain NRL09_08410 PF13181 Tetratricopeptide repeat NRL09_08410 PF07719 Tetratricopeptide repeat NRL09_08415 PF01136 Peptidase family U32 NRL09_08420 PF01136 Peptidase family U32 NRL09_08425 PF02036 SCP-2 sterol transfer family NRL09_08430 PF00588 SpoU rRNA Methylase family NRL09_08435 PF02082 Transcriptional regulator NRL09_08440 PF00266 Aminotransferase class-V NRL09_08445 PF01592 NifU-like N terminal domain NRL09_08450 PF01521 Iron-sulphur cluster biosynthesis NRL09_08455 PF00226 DnaJ domain NRL09_08455 PF07743 HSCB C-terminal oligomerisation domain NRL09_08460 PF00012 Hsp70 protein NRL09_08465 PF00111 2Fe-2S iron-sulfur cluster binding domain NRL09_08470 PF00883 Cytosol aminopeptidase family, catalytic domain NRL09_08470 PF12404 Peptidase NRL09_08475 PF12404 Peptidase NRL09_08475 PF00883 Cytosol aminopeptidase family, catalytic domain NRL09_08480 PF00334 Nucleoside diphosphate kinase NRL09_08485 PF04055 Radical SAM superfamily NRL09_08495 PF13464 Domain of unknown function (DUF4115) NRL09_08500 PF04551 GcpE protein NRL09_08505 PF13393 Histidyl-tRNA synthetase NRL09_08505 PF03129 Anticodon binding domain NRL09_08510 PF09976 Tetratricopeptide repeat-like domain NRL09_08515 PF13360 PQQ-like domain NRL09_08520 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NRL09_08520 PF01926 50S ribosome-binding GTPase NRL09_08530 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_08530 PF01610 Transposase NRL09_08530 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_08550 PF01464 Transglycosylase SLT domain NRL09_08550 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL09_08555 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal NRL09_08555 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NRL09_08555 PF02769 AIR synthase related protein, C-terminal domain NRL09_08560 PF00361 Proton-conducting membrane transporter NRL09_08565 PF00361 Proton-conducting membrane transporter NRL09_08570 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NRL09_08570 PF00361 Proton-conducting membrane transporter NRL09_08575 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NRL09_08580 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 NRL09_08585 PF12838 4Fe-4S dicluster domain NRL09_08590 PF00146 NADH dehydrogenase NRL09_08595 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NRL09_08595 PF00384 Molybdopterin oxidoreductase NRL09_08595 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NRL09_08600 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NRL09_08600 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NRL09_08610 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NRL09_08610 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NRL09_08615 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NRL09_08620 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 NRL09_08625 PF00691 OmpA family NRL09_08625 PF13677 Membrane MotB of proton-channel complex MotA/MotB NRL09_08630 PF01618 MotA/TolQ/ExbB proton channel family NRL09_08650 PF04536 TPM domain NRL09_08660 PF03411 Penicillin-insensitive murein endopeptidase NRL09_08670 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) NRL09_08675 PF00248 Aldo/keto reductase family NRL09_08690 PF01212 Beta-eliminating lyase NRL09_08700 PF00072 Response regulator receiver domain NRL09_08700 PF00486 Transcriptional regulatory protein, C terminal NRL09_08705 PF03466 LysR substrate binding domain NRL09_08705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_08720 PF03806 AbgT putative transporter family NRL09_08725 PF00881 Nitroreductase family NRL09_08740 PF07690 Major Facilitator Superfamily NRL09_08745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_08745 PF03466 LysR substrate binding domain NRL09_08750 PF00925 GTP cyclohydrolase II NRL09_08755 PF02224 Cytidylate kinase NRL09_08760 PF00575 S1 RNA binding domain NRL09_08765 PF00216 Bacterial DNA-binding protein NRL09_08775 PF18073 Rubredoxin metal binding domain NRL09_08780 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NRL09_08795 PF06508 Queuosine biosynthesis protein QueC NRL09_08800 PF04055 Radical SAM superfamily NRL09_08805 PF12843 Putative quorum-sensing-regulated virulence factor NRL09_08810 PF01923 Cobalamin adenosyltransferase NRL09_08815 PF00816 H-NS histone family NRL09_08820 PF03553 Na+/H+ antiporter family NRL09_08825 PF00265 Thymidine kinase NRL09_08835 PF10722 Putative bacterial sensory transduction regulator NRL09_08855 PF01418 Helix-turn-helix domain, rpiR family NRL09_08855 PF01380 SIS domain NRL09_08860 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NRL09_08860 PF00367 phosphotransferase system, EIIB NRL09_08860 PF02378 Phosphotransferase system, EIIC NRL09_08865 PF00232 Glycosyl hydrolase family 1 NRL09_08880 PF00141 Peroxidase NRL09_08890 PF01609 Transposase DDE domain NRL09_08890 PF13808 DDE_Tnp_1-associated NRL09_08895 PF13657 HipA N-terminal domain NRL09_08895 PF07804 HipA-like C-terminal domain NRL09_08980 PF03707 Bacterial signalling protein N terminal repeat NRL09_08980 PF00563 EAL domain NRL09_08980 PF00990 Diguanylate cyclase, GGDEF domain NRL09_08990 PF00672 HAMP domain NRL09_08990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_08990 PF00512 His Kinase A (phospho-acceptor) domain NRL09_08990 PF01627 Hpt domain NRL09_08990 PF00072 Response regulator receiver domain NRL09_08990 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NRL09_08995 PF00563 EAL domain NRL09_08995 PF03707 Bacterial signalling protein N terminal repeat NRL09_08995 PF00990 Diguanylate cyclase, GGDEF domain NRL09_09030 PF00072 Response regulator receiver domain NRL09_09030 PF00486 Transcriptional regulatory protein, C terminal NRL09_09035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_09035 PF00512 His Kinase A (phospho-acceptor) domain NRL09_09035 PF00072 Response regulator receiver domain NRL09_09035 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL09_09045 PF13188 PAS domain NRL09_09045 PF02954 Bacterial regulatory protein, Fis family NRL09_09045 PF00158 Sigma-54 interaction domain NRL09_09050 PF02653 Branched-chain amino acid transport system / permease component NRL09_09060 PF00005 ABC transporter NRL09_09060 PF12399 Branched-chain amino acid ATP-binding cassette transporter NRL09_09065 PF00005 ABC transporter NRL09_09070 PF01774 UreD urease accessory protein NRL09_09075 PF00547 Urease, gamma subunit NRL09_09080 PF00699 Urease beta subunit NRL09_09085 PF01979 Amidohydrolase family NRL09_09085 PF00449 Urease alpha-subunit, N-terminal domain NRL09_09090 PF05194 UreE urease accessory protein, C-terminal domain NRL09_09090 PF02814 UreE urease accessory protein, N-terminal domain NRL09_09100 PF01730 UreF NRL09_09105 PF02492 CobW/HypB/UreG, nucleotide-binding domain NRL09_09150 PF02646 RmuC family NRL09_09160 PF05598 Transposase domain (DUF772) NRL09_09160 PF01609 Transposase DDE domain NRL09_09180 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain NRL09_09180 PF14490 Helix-hairpin-helix containing domain NRL09_09180 PF13538 UvrD-like helicase C-terminal domain NRL09_09220 PF01548 Transposase NRL09_09220 PF02371 Transposase IS116/IS110/IS902 family NRL09_09260 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NRL09_09260 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NRL09_09265 PF01053 Cys/Met metabolism PLP-dependent enzyme NRL09_09275 PF13460 NAD(P)H-binding NRL09_09280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_09280 PF03466 LysR substrate binding domain NRL09_09285 PF02311 AraC-like ligand binding domain NRL09_09285 PF12833 Helix-turn-helix domain NRL09_09290 PF12792 CSS motif domain associated with EAL NRL09_09290 PF00563 EAL domain NRL09_09295 PF00990 Diguanylate cyclase, GGDEF domain NRL09_09300 PF07715 TonB-dependent Receptor Plug Domain NRL09_09300 PF00593 TonB dependent receptor NRL09_09310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_09310 PF03466 LysR substrate binding domain NRL09_09315 PF08267 Cobalamin-independent synthase, N-terminal domain NRL09_09315 PF01717 Cobalamin-independent synthase, Catalytic domain NRL09_09325 PF00571 CBS domain NRL09_09325 PF01743 Poly A polymerase head domain NRL09_09330 PF07969 Amidohydrolase family NRL09_09340 PF01266 FAD dependent oxidoreductase NRL09_09345 PF04244 Deoxyribodipyrimidine photo-lyase-related protein NRL09_09355 PF00768 D-alanyl-D-alanine carboxypeptidase NRL09_09360 PF03918 Cytochrome C biogenesis protein NRL09_09365 PF08534 Redoxin NRL09_09370 PF01578 Cytochrome C assembly protein NRL09_09370 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal NRL09_09375 PF03916 Polysulphide reductase, NrfD NRL09_09380 PF13247 4Fe-4S dicluster domain NRL09_09380 PF00037 4Fe-4S binding domain NRL09_09385 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) NRL09_09385 PF13435 Cytochrome c554 and c-prime NRL09_09390 PF02335 Cytochrome c552 NRL09_09400 PF02754 Cysteine-rich domain NRL09_09400 PF13183 4Fe-4S dicluster domain NRL09_09410 PF00890 FAD binding domain NRL09_09415 PF01266 FAD dependent oxidoreductase NRL09_09415 PF04324 BFD-like [2Fe-2S] binding domain NRL09_09420 PF02810 SEC-C motif NRL09_09425 PF17200 Single Cache domain 2 NRL09_09425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL09_09425 PF00672 HAMP domain NRL09_09430 PF01047 MarR family NRL09_09430 PF00480 ROK family NRL09_09435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_09435 PF00989 PAS fold NRL09_09435 PF17203 Single cache domain 3 NRL09_09435 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain NRL09_09440 PF00072 Response regulator receiver domain NRL09_09445 PF01970 Tripartite tricarboxylate transporter TctA family NRL09_09455 PF03401 Tripartite tricarboxylate transporter family receptor NRL09_09460 PF01551 Peptidase family M23 NRL09_09460 PF01464 Transglycosylase SLT domain NRL09_09460 PF10145 Phage-related minor tail protein NRL09_09465 PF02080 TrkA-C domain NRL09_09465 PF06826 Predicted Permease Membrane Region NRL09_09475 PF12344 Ultra-violet resistance protein B NRL09_09475 PF02151 UvrB/uvrC motif NRL09_09475 PF04851 Type III restriction enzyme, res subunit NRL09_09475 PF00271 Helicase conserved C-terminal domain NRL09_09475 PF17757 UvrB interaction domain NRL09_09485 PF09335 SNARE associated Golgi protein NRL09_09490 PF02600 Disulfide bond formation protein DsbB NRL09_09495 PF06450 Bacterial Na+/H+ antiporter B (NhaB) NRL09_09500 PF07840 FadR C-terminal domain NRL09_09500 PF00392 Bacterial regulatory proteins, gntR family NRL09_09505 PF04293 SpoVR like protein NRL09_09510 PF04285 Protein of unknown function (DUF444) NRL09_09515 PF08298 PrkA AAA domain NRL09_09515 PF06798 PrkA serine protein kinase C-terminal domain NRL09_09525 PF00270 DEAD/DEAH box helicase NRL09_09525 PF00271 Helicase conserved C-terminal domain NRL09_09525 PF00570 HRDC domain NRL09_09525 PF16124 RecQ zinc-binding NRL09_09525 PF09382 RQC domain NRL09_09530 PF00375 Sodium:dicarboxylate symporter family NRL09_09535 PF03222 Tryptophan/tyrosine permease family NRL09_09540 PF00293 NUDIX domain NRL09_09545 PF00425 chorismate binding enzyme NRL09_09545 PF04715 Anthranilate synthase component I, N terminal region NRL09_09565 PF00343 Carbohydrate phosphorylase NRL09_09575 PF00939 Sodium:sulfate symporter transmembrane region NRL09_09580 PF00085 Thioredoxin NRL09_09585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_09585 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NRL09_09585 PF00672 HAMP domain NRL09_09585 PF00072 Response regulator receiver domain NRL09_09585 PF01627 Hpt domain NRL09_09585 PF00512 His Kinase A (phospho-acceptor) domain NRL09_09590 PF00664 ABC transporter transmembrane region NRL09_09590 PF00005 ABC transporter NRL09_09595 PF00664 ABC transporter transmembrane region NRL09_09595 PF00005 ABC transporter NRL09_09630 PF01575 MaoC like domain NRL09_09655 PF08543 Phosphomethylpyrimidine kinase NRL09_09660 PF03992 Antibiotic biosynthesis monooxygenase NRL09_09665 PF13673 Acetyltransferase (GNAT) domain NRL09_09675 PF01928 CYTH domain NRL09_09690 PF00583 Acetyltransferase (GNAT) family NRL09_09695 PF00271 Helicase conserved C-terminal domain NRL09_09695 PF00270 DEAD/DEAH box helicase NRL09_09700 PF00255 Glutathione peroxidase NRL09_09710 PF07478 D-ala D-ala ligase C-terminus NRL09_09710 PF01820 D-ala D-ala ligase N-terminus NRL09_09715 PF03942 DTW domain NRL09_09725 PF01925 Sulfite exporter TauE/SafE NRL09_09730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_09730 PF03466 LysR substrate binding domain NRL09_09750 PF11398 Protein of unknown function (DUF2813) NRL09_09775 PF00883 Cytosol aminopeptidase family, catalytic domain NRL09_09775 PF02789 Cytosol aminopeptidase family, N-terminal domain NRL09_09780 PF13419 Haloacid dehalogenase-like hydrolase NRL09_09785 PF01546 Peptidase family M20/M25/M40 NRL09_09785 PF07687 Peptidase dimerisation domain NRL09_09795 PF00365 Phosphofructokinase NRL09_09800 PF00121 Triosephosphate isomerase NRL09_09805 PF02698 DUF218 domain NRL09_09810 PF13847 Methyltransferase domain NRL09_09815 PF17193 MukF C-terminal domain NRL09_09815 PF17192 MukF middle domain NRL09_09815 PF03882 MukF winged-helix domain NRL09_09820 PF04288 MukE-like family NRL09_09825 PF04310 MukB N-terminal NRL09_09825 PF16330 MukB hinge domain NRL09_09840 PF03330 Lytic transglycolase NRL09_09840 PF05036 Sporulation related domain NRL09_09880 PF01810 LysE type translocator NRL09_09895 PF08274 PhnA Zinc-Ribbon NRL09_09895 PF03831 PhnA domain NRL09_09940 PF01713 Smr domain NRL09_09945 PF05175 Methyltransferase small domain NRL09_09950 PF01264 Chorismate synthase NRL09_09960 PF00271 Helicase conserved C-terminal domain NRL09_09960 PF00270 DEAD/DEAH box helicase NRL09_09975 PF03222 Tryptophan/tyrosine permease family NRL09_09980 PF00356 Bacterial regulatory proteins, lacI family NRL09_09980 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NRL09_09985 PF00381 PTS HPr component phosphorylation site NRL09_09985 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRL09_09990 PF00294 pfkB family carbohydrate kinase NRL09_09995 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NRL09_09995 PF02378 Phosphotransferase system, EIIC NRL09_10000 PF06945 Protein of unknown function (DUF1289) NRL09_10005 PF03562 MltA specific insert domain NRL09_10005 PF06725 3D domain NRL09_10015 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_10015 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_10015 PF01610 Transposase NRL09_10025 PF00111 2Fe-2S iron-sulfur cluster binding domain NRL09_10030 PF00268 Ribonucleotide reductase, small chain NRL09_10035 PF03477 ATP cone domain NRL09_10035 PF02867 Ribonucleotide reductase, barrel domain NRL09_10035 PF00317 Ribonucleotide reductase, all-alpha domain NRL09_10040 PF13419 Haloacid dehalogenase-like hydrolase NRL09_10050 PF03989 DNA gyrase C-terminal domain, beta-propeller NRL09_10050 PF00521 DNA gyrase/topoisomerase IV, subunit A NRL09_10070 PF07282 Putative transposase DNA-binding domain NRL09_10070 PF12323 Helix-turn-helix domain NRL09_10070 PF01385 Probable transposase NRL09_10110 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NRL09_10110 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NRL09_10110 PF02824 TGS domain NRL09_10110 PF03129 Anticodon binding domain NRL09_10115 PF00707 Translation initiation factor IF-3, C-terminal domain NRL09_10115 PF05198 Translation initiation factor IF-3, N-terminal domain NRL09_10120 PF01632 Ribosomal protein L35 NRL09_10125 PF00453 Ribosomal protein L20 NRL09_10130 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NRL09_10130 PF01409 tRNA synthetases class II core domain (F) NRL09_10135 PF03484 tRNA synthetase B5 domain NRL09_10135 PF03147 Ferredoxin-fold anticodon binding domain NRL09_10135 PF01588 Putative tRNA binding domain NRL09_10135 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NRL09_10135 PF03483 B3/4 domain NRL09_10140 PF00216 Bacterial DNA-binding protein NRL09_10145 PF09456 RcsC Alpha-Beta-Loop (ABL) NRL09_10145 PF00512 His Kinase A (phospho-acceptor) domain NRL09_10145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_10145 PF00072 Response regulator receiver domain NRL09_10160 PF02146 Sir2 family NRL09_10170 PF03707 Bacterial signalling protein N terminal repeat NRL09_10170 PF00563 EAL domain NRL09_10170 PF00990 Diguanylate cyclase, GGDEF domain NRL09_10180 PF00356 Bacterial regulatory proteins, lacI family NRL09_10185 PF00294 pfkB family carbohydrate kinase NRL09_10190 PF13407 Periplasmic binding protein domain NRL09_10195 PF02653 Branched-chain amino acid transport system / permease component NRL09_10200 PF00005 ABC transporter NRL09_10205 PF05025 RbsD / FucU transport protein family NRL09_10210 PF02798 Glutathione S-transferase, N-terminal domain NRL09_10210 PF00043 Glutathione S-transferase, C-terminal domain NRL09_10225 PF01171 PP-loop family NRL09_10230 PF00582 Universal stress protein family NRL09_10235 PF13545 Crp-like helix-turn-helix domain NRL09_10235 PF00027 Cyclic nucleotide-binding domain NRL09_10250 PF00403 Heavy-metal-associated domain NRL09_10260 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NRL09_10260 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP NRL09_10275 PF00115 Cytochrome C and Quinol oxidase polypeptide I NRL09_10285 PF13185 GAF domain NRL09_10290 PF17516 ProQ C-terminal domain NRL09_10290 PF04352 ProQ/FINO family NRL09_10295 PF11818 C-terminal domain of tail specific protease (DUF3340) NRL09_10295 PF00595 PDZ domain NRL09_10295 PF03572 Peptidase family S41 NRL09_10295 PF17804 Tail specific protease N-terminal domain NRL09_10300 PF11940 Domain of unknown function (DUF3458) Ig-like fold NRL09_10300 PF17432 Domain of unknown function (DUF3458_C) ARM repeats NRL09_10300 PF01433 Peptidase family M1 domain NRL09_10310 PF05088 Bacterial NAD-glutamate dehydrogenase NRL09_10315 PF01180 Dihydroorotate dehydrogenase NRL09_10320 PF07126 Cell-division protein ZapC NRL09_10325 PF02926 THUMP domain NRL09_10325 PF10672 S-adenosylmethionine-dependent methyltransferase NRL09_10325 PF01170 Putative RNA methylase family UPF0020 NRL09_10335 PF00005 ABC transporter NRL09_10335 PF16326 ABC transporter C-terminal domain NRL09_10335 PF12848 ABC transporter NRL09_10345 PF04957 Ribosome modulation factor NRL09_10350 PF07977 FabA-like domain NRL09_10355 PF05362 Lon protease (S16) C-terminal proteolytic domain NRL09_10355 PF13654 AAA domain NRL09_10475 PF13808 DDE_Tnp_1-associated NRL09_10475 PF01609 Transposase DDE domain NRL09_10560 PF05840 Bacteriophage replication gene A protein (GPA) NRL09_10600 PF01610 Transposase NRL09_10600 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_10600 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_10615 PF07130 YebG protein NRL09_10625 PF04403 Paraquat-inducible protein A NRL09_10630 PF02470 MlaD protein NRL09_10635 PF01189 16S rRNA methyltransferase RsmB/F NRL09_10635 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF NRL09_10635 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF NRL09_10645 PF00589 Phage integrase family NRL09_10650 PF01026 TatD related DNase NRL09_10655 PF09115 DNA polymerase III, delta subunit, C terminal NRL09_10660 PF02223 Thymidylate kinase NRL09_10665 PF02618 YceG-like family NRL09_10670 PF01063 Amino-transferase class IV NRL09_10675 PF00109 Beta-ketoacyl synthase, N-terminal domain NRL09_10675 PF02801 Beta-ketoacyl synthase, C-terminal domain NRL09_10680 PF00550 Phosphopantetheine attachment site NRL09_10690 PF00698 Acyl transferase domain NRL09_10695 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NRL09_10695 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NRL09_10700 PF02504 Fatty acid synthesis protein NRL09_10705 PF01783 Ribosomal L32p protein family NRL09_10710 PF02620 Large ribosomal RNA subunit accumulation protein YceD NRL09_10720 PF02545 Maf-like protein NRL09_10725 PF01479 S4 domain NRL09_10725 PF00849 RNA pseudouridylate synthase NRL09_10730 PF12111 Polyribonucleotide phosphorylase C terminal NRL09_10730 PF10150 Ribonuclease E/G family NRL09_10730 PF00575 S1 RNA binding domain NRL09_10735 PF01384 Phosphate transporter family NRL09_10740 PF00692 dUTPase NRL09_10745 PF00485 Phosphoribulokinase / Uridine kinase family NRL09_10750 PF10609 NUBPL iron-transfer P-loop NTPase NRL09_10755 PF01588 Putative tRNA binding domain NRL09_10755 PF09334 tRNA synthetases class I (M) NRL09_10755 PF08264 Anticodon-binding domain of tRNA NRL09_10765 PF00708 Acylphosphatase NRL09_10770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL09_10770 PF00672 HAMP domain NRL09_10770 PF12729 Four helix bundle sensory module for signal transduction NRL09_10775 PF10672 S-adenosylmethionine-dependent methyltransferase NRL09_10775 PF17785 PUA-like domain NRL09_10780 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_10780 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_10780 PF01610 Transposase NRL09_10795 PF02769 AIR synthase related protein, C-terminal domain NRL09_10795 PF00586 AIR synthase related protein, N-terminal domain NRL09_10805 PF00753 Metallo-beta-lactamase superfamily NRL09_10810 PF00072 Response regulator receiver domain NRL09_10815 PF00072 Response regulator receiver domain NRL09_10825 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NRL09_10825 PF00672 HAMP domain NRL09_10825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_10825 PF00512 His Kinase A (phospho-acceptor) domain NRL09_10825 PF01627 Hpt domain NRL09_10825 PF00072 Response regulator receiver domain NRL09_10830 PF01386 Ribosomal L25p family NRL09_10840 PF00270 DEAD/DEAH box helicase NRL09_10840 PF11898 Domain of unknown function (DUF3418) NRL09_10840 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold NRL09_10840 PF00271 Helicase conserved C-terminal domain NRL09_10840 PF04408 Helicase associated domain (HA2) NRL09_10845 PF02272 DHHA1 domain NRL09_10845 PF00571 CBS domain NRL09_10845 PF01743 Poly A polymerase head domain NRL09_10845 PF01368 DHH family NRL09_10850 PF00196 Bacterial regulatory proteins, luxR family NRL09_10850 PF00072 Response regulator receiver domain NRL09_10860 PF13610 DDE domain NRL09_10870 PF00809 Pterin binding enzyme NRL09_10875 PF00893 Small Multidrug Resistance protein NRL09_10890 PF01610 Transposase NRL09_10890 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_10890 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_10900 PF01609 Transposase DDE domain NRL09_10910 PF00589 Phage integrase family NRL09_10910 PF13495 Phage integrase, N-terminal SAM-like domain NRL09_10915 PF07670 Nucleoside recognition NRL09_10920 PF05726 Pirin C-terminal cupin domain NRL09_10920 PF02678 Pirin NRL09_10925 PF03466 LysR substrate binding domain NRL09_10925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_10930 PF02575 YbaB/EbfC DNA-binding family NRL09_10935 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding NRL09_10935 PF12170 DNA polymerase III tau subunit V interacting with alpha NRL09_10935 PF12169 DNA polymerase III subunits gamma and tau domain III NRL09_10940 PF00156 Phosphoribosyl transferase domain NRL09_10945 PF04304 Protein of unknown function (DUF454) NRL09_10950 PF01207 Dihydrouridine synthase (Dus) NRL09_10960 PF00892 EamA-like transporter family NRL09_10970 PF00570 HRDC domain NRL09_10970 PF01612 3'-5' exonuclease NRL09_10975 PF13193 AMP-binding enzyme C-terminal domain NRL09_10975 PF00501 AMP-binding enzyme NRL09_10980 PF00561 alpha/beta hydrolase fold NRL09_10990 PF00814 Glycoprotease family NRL09_10995 PF13307 Helicase C-terminal domain NRL09_10995 PF04851 Type III restriction enzyme, res subunit NRL09_11005 PF08029 HisG, C-terminal domain NRL09_11005 PF01634 ATP phosphoribosyltransferase NRL09_11010 PF00815 Histidinol dehydrogenase NRL09_11015 PF00155 Aminotransferase class I and II NRL09_11020 PF08645 Polynucleotide kinase 3 phosphatase NRL09_11020 PF00475 Imidazoleglycerol-phosphate dehydratase NRL09_11025 PF00117 Glutamine amidotransferase class-I NRL09_11030 PF00977 Histidine biosynthesis protein NRL09_11035 PF00072 Response regulator receiver domain NRL09_11040 PF00990 Diguanylate cyclase, GGDEF domain NRL09_11040 PF08448 PAS fold NRL09_11045 PF00072 Response regulator receiver domain NRL09_11045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_11045 PF00512 His Kinase A (phospho-acceptor) domain NRL09_11045 PF01627 Hpt domain NRL09_11050 PF00977 Histidine biosynthesis protein NRL09_11055 PF01502 Phosphoribosyl-AMP cyclohydrolase NRL09_11055 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase NRL09_11065 PF01609 Transposase DDE domain NRL09_11065 PF13808 DDE_Tnp_1-associated NRL09_11075 PF01609 Transposase DDE domain NRL09_11085 PF01609 Transposase DDE domain NRL09_11095 PF00501 AMP-binding enzyme NRL09_11095 PF13193 AMP-binding enzyme C-terminal domain NRL09_11100 PF05433 Glycine zipper 2TM domain NRL09_11115 PF01032 FecCD transport family NRL09_11120 PF00005 ABC transporter NRL09_11125 PF07690 Major Facilitator Superfamily NRL09_11135 PF07152 YaeQ protein NRL09_11145 PF00378 Enoyl-CoA hydratase/isomerase NRL09_11145 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NRL09_11145 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NRL09_11150 PF02803 Thiolase, C-terminal domain NRL09_11150 PF00108 Thiolase, N-terminal domain NRL09_11155 PF07726 ATPase family associated with various cellular activities (AAA) NRL09_11155 PF17863 AAA lid domain NRL09_11160 PF01882 Protein of unknown function DUF58 NRL09_11185 PF04542 Sigma-70 region 2 NRL09_11185 PF08281 Sigma-70, region 4 NRL09_11195 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) NRL09_11200 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) NRL09_11205 PF00563 EAL domain NRL09_11205 PF08668 HDOD domain NRL09_11210 PF00108 Thiolase, N-terminal domain NRL09_11210 PF02803 Thiolase, C-terminal domain NRL09_11215 PF09278 MerR, DNA binding NRL09_11215 PF00376 MerR family regulatory protein NRL09_11220 PF00375 Sodium:dicarboxylate symporter family NRL09_11225 PF06865 Pyrimidine/purine nucleoside phosphorylase NRL09_11230 PF03313 Serine dehydratase alpha chain NRL09_11230 PF03315 Serine dehydratase beta chain NRL09_11235 PF03313 Serine dehydratase alpha chain NRL09_11235 PF03315 Serine dehydratase beta chain NRL09_11240 PF13406 Transglycosylase SLT domain NRL09_11245 PF05166 YcgL domain NRL09_11250 PF03775 Septum formation inhibitor MinC, C-terminal domain NRL09_11250 PF05209 Septum formation inhibitor MinC, N-terminal domain NRL09_11255 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NRL09_11260 PF03776 Septum formation topological specificity factor MinE NRL09_11265 PF04269 Protein of unknown function, DUF440 NRL09_11270 PF00912 Transglycosylase NRL09_11275 PF04269 Protein of unknown function, DUF440 NRL09_11285 PF17783 CvfB-like winged helix domain NRL09_11285 PF13509 S1 domain NRL09_11290 PF07282 Putative transposase DNA-binding domain NRL09_11290 PF12323 Helix-turn-helix domain NRL09_11290 PF01385 Probable transposase NRL09_11320 PF02525 Flavodoxin-like fold NRL09_11325 PF00892 EamA-like transporter family NRL09_11330 PF01370 NAD dependent epimerase/dehydratase family NRL09_11330 PF02222 ATP-grasp domain NRL09_11335 PF13419 Haloacid dehalogenase-like hydrolase NRL09_11350 PF00677 Lumazine binding domain NRL09_11355 PF06786 Uncharacterised protein family (UPF0253) NRL09_11360 PF01554 MatE NRL09_11390 PF00136 DNA polymerase family B NRL09_11390 PF03104 DNA polymerase family B, exonuclease domain NRL09_11395 PF02678 Pirin NRL09_11395 PF05726 Pirin C-terminal cupin domain NRL09_11405 PF03279 Bacterial lipid A biosynthesis acyltransferase NRL09_11410 PF03279 Bacterial lipid A biosynthesis acyltransferase NRL09_11420 PF03466 LysR substrate binding domain NRL09_11420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_11425 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NRL09_11425 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NRL09_11430 PF01261 Xylose isomerase-like TIM barrel NRL09_11435 PF00933 Glycosyl hydrolase family 3 N terminal domain NRL09_11445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_11445 PF03466 LysR substrate binding domain NRL09_11455 PF00232 Glycosyl hydrolase family 1 NRL09_11460 PF03466 LysR substrate binding domain NRL09_11460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_11465 PF00072 Response regulator receiver domain NRL09_11465 PF00990 Diguanylate cyclase, GGDEF domain NRL09_11470 PF00384 Molybdopterin oxidoreductase NRL09_11475 PF02634 FdhD/NarQ family NRL09_11490 PF03466 LysR substrate binding domain NRL09_11490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_11495 PF13407 Periplasmic binding protein domain NRL09_11500 PF00005 ABC transporter NRL09_11505 PF02653 Branched-chain amino acid transport system / permease component NRL09_11510 PF02653 Branched-chain amino acid transport system / permease component NRL09_11515 PF12706 Beta-lactamase superfamily domain NRL09_11540 PF02796 Helix-turn-helix domain of resolvase NRL09_11540 PF00239 Resolvase, N terminal domain NRL09_11560 PF04002 RadC-like JAB domain NRL09_11585 PF01420 Type I restriction modification DNA specificity domain NRL09_11590 PF02384 N-6 DNA Methylase NRL09_11610 PF01925 Sulfite exporter TauE/SafE NRL09_11615 PF13520 Amino acid permease NRL09_11625 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NRL09_11625 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NRL09_11630 PF00378 Enoyl-CoA hydratase/isomerase NRL09_11635 PF00378 Enoyl-CoA hydratase/isomerase NRL09_11640 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRL09_11640 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRL09_11640 PF02770 Acyl-CoA dehydrogenase, middle domain NRL09_11645 PF00171 Aldehyde dehydrogenase family NRL09_11650 PF02770 Acyl-CoA dehydrogenase, middle domain NRL09_11650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRL09_11650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRL09_11655 PF01039 Carboxyl transferase domain NRL09_11660 PF00378 Enoyl-CoA hydratase/isomerase NRL09_11665 PF00289 Biotin carboxylase, N-terminal domain NRL09_11665 PF02785 Biotin carboxylase C-terminal domain NRL09_11665 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NRL09_11665 PF00364 Biotin-requiring enzyme NRL09_11670 PF00682 HMGL-like NRL09_11675 PF09278 MerR, DNA binding NRL09_11675 PF00376 MerR family regulatory protein NRL09_11685 PF01184 GPR1/FUN34/yaaH family NRL09_11690 PF06167 Glucose-regulated metallo-peptidase M90 NRL09_11700 PF01235 Sodium:alanine symporter family NRL09_11705 PF00378 Enoyl-CoA hydratase/isomerase NRL09_11720 PF04341 Protein of unknown function, DUF485 NRL09_11725 PF00474 Sodium:solute symporter family NRL09_11730 PF00005 ABC transporter NRL09_11730 PF12848 ABC transporter NRL09_11735 PF13145 PPIC-type PPIASE domain NRL09_11740 PF00216 Bacterial DNA-binding protein NRL09_11745 PF02190 ATP-dependent protease La (LON) substrate-binding domain NRL09_11745 PF05362 Lon protease (S16) C-terminal proteolytic domain NRL09_11745 PF00004 ATPase family associated with various cellular activities (AAA) NRL09_11750 PF06689 ClpX C4-type zinc finger NRL09_11750 PF10431 C-terminal, D2-small domain, of ClpB protein NRL09_11750 PF07724 AAA domain (Cdc48 subfamily) NRL09_11755 PF00574 Clp protease NRL09_11760 PF05697 Bacterial trigger factor protein (TF) NRL09_11760 PF05698 Bacterial trigger factor protein (TF) C-terminus NRL09_11760 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRL09_11775 PF02687 FtsX-like permease family NRL09_11775 PF12704 MacB-like periplasmic core domain NRL09_11780 PF00005 ABC transporter NRL09_11785 PF12704 MacB-like periplasmic core domain NRL09_11785 PF02687 FtsX-like permease family NRL09_11795 PF17757 UvrB interaction domain NRL09_11795 PF02559 CarD-like/TRCF domain NRL09_11795 PF00270 DEAD/DEAH box helicase NRL09_11795 PF03461 TRCF domain NRL09_11795 PF00271 Helicase conserved C-terminal domain NRL09_11800 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain NRL09_11810 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRL09_11815 PF00892 EamA-like transporter family NRL09_11825 PF00300 Histidine phosphatase superfamily (branch 1) NRL09_11830 PF00675 Insulinase (Peptidase family M16) NRL09_11830 PF16187 Middle or third domain of peptidase_M16 NRL09_11830 PF05193 Peptidase M16 inactive domain NRL09_11835 PF05724 Thiopurine S-methyltransferase (TPMT) NRL09_11845 PF01047 MarR family NRL09_11865 PF01609 Transposase DDE domain NRL09_11870 PF00958 GMP synthase C terminal domain NRL09_11870 PF02540 NAD synthase NRL09_11870 PF00117 Glutamine amidotransferase class-I NRL09_11875 PF00571 CBS domain NRL09_11875 PF00478 IMP dehydrogenase / GMP reductase domain NRL09_11885 PF00128 Alpha amylase, catalytic domain NRL09_11885 PF03423 Carbohydrate binding domain (family 25) NRL09_11885 PF01373 Glycosyl hydrolase family 14 NRL09_11895 PF02601 Exonuclease VII, large subunit NRL09_11895 PF13742 OB-fold nucleic acid binding domain NRL09_11900 PF04055 Radical SAM superfamily NRL09_11905 PF00691 OmpA family NRL09_11920 PF00158 Sigma-54 interaction domain NRL09_11920 PF18024 Helix-turn-helix domain NRL09_11925 PF01329 Pterin 4 alpha carbinolamine dehydratase NRL09_11930 PF00351 Biopterin-dependent aromatic amino acid hydroxylase NRL09_11935 PF05128 Domain of unknown function (DUF697) NRL09_11940 PF04317 YcjX-like family, DUF463 NRL09_11950 PF06667 Phage shock protein B NRL09_11955 PF04012 PspA/IM30 family NRL09_11960 PF02954 Bacterial regulatory protein, Fis family NRL09_11960 PF00158 Sigma-54 interaction domain NRL09_11965 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRL09_11970 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_11975 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_11975 PF12911 N-terminal TM domain of oligopeptide transport permease C NRL09_11980 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRL09_11980 PF00005 ABC transporter NRL09_11985 PF00005 ABC transporter NRL09_11990 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) NRL09_11995 PF00356 Bacterial regulatory proteins, lacI family NRL09_12000 PF00367 phosphotransferase system, EIIB NRL09_12000 PF02378 Phosphotransferase system, EIIC NRL09_12005 PF00232 Glycosyl hydrolase family 1 NRL09_12010 PF00156 Phosphoribosyl transferase domain NRL09_12015 PF02674 Colicin V production protein NRL09_12020 PF02403 Seryl-tRNA synthetase N-terminal domain NRL09_12020 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NRL09_12025 PF00004 ATPase family associated with various cellular activities (AAA) NRL09_12025 PF16193 AAA C-terminal domain NRL09_12025 PF12002 MgsA AAA+ ATPase C terminal NRL09_12030 PF03548 Outer membrane lipoprotein carrier protein LolA NRL09_12035 PF01580 FtsK/SpoIIIE family NRL09_12035 PF09397 Ftsk gamma domain NRL09_12035 PF13491 4TM region of DNA translocase FtsK/SpoIIIE NRL09_12035 PF17854 FtsK alpha domain NRL09_12040 PF01037 Lrp/AsnC ligand binding domain NRL09_12045 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NRL09_12045 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NRL09_12050 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL09_12055 PF00990 Diguanylate cyclase, GGDEF domain NRL09_12055 PF05230 MASE2 domain NRL09_12060 PF05433 Glycine zipper 2TM domain NRL09_12065 PF03588 Leucyl/phenylalanyl-tRNA protein transferase NRL09_12070 PF04377 Arginine-tRNA-protein transferase, C terminus NRL09_12070 PF04376 Arginine-tRNA-protein transferase, N terminus NRL09_12075 PF01176 Translation initiation factor 1A / IF-1 NRL09_12080 PF17871 AAA lid domain NRL09_12080 PF10431 C-terminal, D2-small domain, of ClpB protein NRL09_12080 PF07724 AAA domain (Cdc48 subfamily) NRL09_12080 PF00004 ATPase family associated with various cellular activities (AAA) NRL09_12080 PF02861 Clp amino terminal domain, pathogenicity island component NRL09_12085 PF02617 ATP-dependent Clp protease adaptor protein ClpS NRL09_12090 PF00313 'Cold-shock' DNA-binding domain NRL09_12095 PF01118 Semialdehyde dehydrogenase, NAD binding domain NRL09_12095 PF02774 Semialdehyde dehydrogenase, dimerisation domain NRL09_12100 PF00893 Small Multidrug Resistance protein NRL09_12115 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding NRL09_12115 PF18381 YcaO cyclodehydratase C-terminal domain NRL09_12120 PF01226 Formate/nitrite transporter NRL09_12125 PF01228 Glycine radical NRL09_12125 PF02901 Pyruvate formate lyase-like NRL09_12130 PF03692 Putative zinc- or iron-chelating domain NRL09_12150 PF13006 Insertion element 4 transposase N-terminal NRL09_12150 PF01609 Transposase DDE domain NRL09_12155 PF02629 CoA binding domain NRL09_12155 PF00549 CoA-ligase NRL09_12160 PF08442 ATP-grasp domain NRL09_12160 PF00549 CoA-ligase NRL09_12165 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NRL09_12165 PF00364 Biotin-requiring enzyme NRL09_12165 PF02817 e3 binding domain NRL09_12170 PF00676 Dehydrogenase E1 component NRL09_12170 PF16078 2-oxoglutarate dehydrogenase N-terminus NRL09_12170 PF16870 2-oxoglutarate dehydrogenase C-terminal NRL09_12170 PF02779 Transketolase, pyrimidine binding domain NRL09_12175 PF13085 2Fe-2S iron-sulfur cluster binding domain NRL09_12180 PF00890 FAD binding domain NRL09_12180 PF02910 Fumarate reductase flavoprotein C-term NRL09_12185 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NRL09_12190 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NRL09_12195 PF00285 Citrate synthase, C-terminal domain NRL09_12210 PF00109 Beta-ketoacyl synthase, N-terminal domain NRL09_12210 PF02801 Beta-ketoacyl synthase, C-terminal domain NRL09_12215 PF01266 FAD dependent oxidoreductase NRL09_12215 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NRL09_12225 PF03606 C4-dicarboxylate anaerobic carrier NRL09_12240 PF01863 Protein of unknown function DUF45 NRL09_12255 PF01197 Ribosomal protein L31 NRL09_12260 PF00444 Ribosomal protein L36 NRL09_12265 PF02311 AraC-like ligand binding domain NRL09_12265 PF12833 Helix-turn-helix domain NRL09_12270 PF02653 Branched-chain amino acid transport system / permease component NRL09_12275 PF00005 ABC transporter NRL09_12280 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NRL09_12285 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NRL09_12290 PF00596 Class II Aldolase and Adducin N-terminal domain NRL09_12295 PF02610 L-arabinose isomerase NRL09_12295 PF11762 L-arabinose isomerase C-terminal domain NRL09_12300 PF03466 LysR substrate binding domain NRL09_12300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_12305 PF00155 Aminotransferase class I and II NRL09_12310 PF00795 Carbon-nitrogen hydrolase NRL09_12315 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL09_12325 PF03706 Lysylphosphatidylglycerol synthase TM region NRL09_12325 PF09924 Uncharacterised conserved protein (DUF2156) NRL09_12330 PF00149 Calcineurin-like phosphoesterase NRL09_12365 PF04984 Phage tail sheath protein subtilisin-like domain NRL09_12365 PF17482 Phage tail sheath C-terminal domain NRL09_12375 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NRL09_12375 PF01348 Type II intron maturase NRL09_12485 PF05866 Endodeoxyribonuclease RusA NRL09_12500 PF18755 Restriction Enzyme Adenine Methylase Associated NRL09_12500 PF01555 DNA methylase NRL09_12565 PF05154 TM2 domain NRL09_12580 PF02767 DNA polymerase III beta subunit, central domain NRL09_12580 PF00712 DNA polymerase III beta subunit, N-terminal domain NRL09_12580 PF02768 DNA polymerase III beta subunit, C-terminal domain NRL09_12610 PF00436 Single-strand binding protein family NRL09_12620 PF08411 Exonuclease C-terminal NRL09_12620 PF00929 Exonuclease NRL09_12635 PF03788 LrgA family NRL09_12640 PF04172 LrgB-like family NRL09_12645 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NRL09_12645 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region NRL09_12650 PF00501 AMP-binding enzyme NRL09_12655 PF08891 YfcL protein NRL09_12665 PF03741 Integral membrane protein TerC family NRL09_12670 PF00793 DAHP synthetase I family NRL09_12675 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NRL09_12680 PF00266 Aminotransferase class-V NRL09_12685 PF01012 Electron transfer flavoprotein domain NRL09_12685 PF00766 Electron transfer flavoprotein FAD-binding domain NRL09_12690 PF01012 Electron transfer flavoprotein domain NRL09_12700 PF01544 CorA-like Mg2+ transporter protein NRL09_12705 PF11143 Protein of unknown function (DUF2919) NRL09_12720 PF00593 TonB dependent receptor NRL09_12720 PF07715 TonB-dependent Receptor Plug Domain NRL09_12725 PF01032 FecCD transport family NRL09_12730 PF01032 FecCD transport family NRL09_12735 PF00005 ABC transporter NRL09_12740 PF17837 4'-phosphopantetheinyl transferase N-terminal domain NRL09_12740 PF01648 4'-phosphopantetheinyl transferase superfamily NRL09_12745 PF01497 Periplasmic binding protein NRL09_12750 PF00975 Thioesterase domain NRL09_12750 PF00668 Condensation domain NRL09_12750 PF13193 AMP-binding enzyme C-terminal domain NRL09_12750 PF00550 Phosphopantetheine attachment site NRL09_12750 PF00501 AMP-binding enzyme NRL09_12755 PF00550 Phosphopantetheine attachment site NRL09_12755 PF07993 Male sterility protein NRL09_12755 PF00668 Condensation domain NRL09_12755 PF13193 AMP-binding enzyme C-terminal domain NRL09_12755 PF00501 AMP-binding enzyme NRL09_12765 PF13193 AMP-binding enzyme C-terminal domain NRL09_12765 PF00501 AMP-binding enzyme NRL09_12765 PF00975 Thioesterase domain NRL09_12765 PF00668 Condensation domain NRL09_12765 PF00550 Phosphopantetheine attachment site NRL09_12770 PF00857 Isochorismatase family NRL09_12770 PF00550 Phosphopantetheine attachment site NRL09_12775 PF00501 AMP-binding enzyme NRL09_12775 PF13193 AMP-binding enzyme C-terminal domain NRL09_12780 PF00425 chorismate binding enzyme NRL09_12785 PF07273 Protein of unknown function (DUF1439) NRL09_12795 PF00483 Nucleotidyl transferase NRL09_12800 PF00990 Diguanylate cyclase, GGDEF domain NRL09_12800 PF03707 Bacterial signalling protein N terminal repeat NRL09_12800 PF00563 EAL domain NRL09_12815 PF17200 Single Cache domain 2 NRL09_12815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL09_12815 PF00672 HAMP domain NRL09_12820 PF00294 pfkB family carbohydrate kinase NRL09_12825 PF01124 MAPEG family NRL09_12830 PF00762 Ferrochelatase NRL09_12835 PF05191 Adenylate kinase, active site lid NRL09_12840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_12840 PF00183 Hsp90 protein NRL09_12845 PF02132 RecR protein NRL09_12845 PF13662 Toprim domain NRL09_12860 PF01740 STAS domain NRL09_12860 PF00916 Sulfate permease family NRL09_12875 PF14403 Circularly permuted ATP-grasp type 2 NRL09_12880 PF04168 A predicted alpha-helical domain with a conserved ER motif. NRL09_12880 PF14403 Circularly permuted ATP-grasp type 2 NRL09_12910 PF03239 Iron permease FTR1 family NRL09_12915 PF01593 Flavin containing amine oxidoreductase NRL09_12935 PF07690 Major Facilitator Superfamily NRL09_12945 PF03600 Citrate transporter NRL09_12955 PF00005 ABC transporter NRL09_12960 PF12704 MacB-like periplasmic core domain NRL09_12960 PF02687 FtsX-like permease family NRL09_12975 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_12975 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_12975 PF01610 Transposase NRL09_12985 PF02589 LUD domain NRL09_12990 PF11870 Domain of unknown function (DUF3390) NRL09_12990 PF13183 4Fe-4S dicluster domain NRL09_12990 PF02589 LUD domain NRL09_12995 PF02754 Cysteine-rich domain NRL09_13000 PF02652 L-lactate permease NRL09_13005 PF03466 LysR substrate binding domain NRL09_13005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_13030 PF01625 Peptide methionine sulfoxide reductase NRL09_13035 PF00696 Amino acid kinase family NRL09_13035 PF00583 Acetyltransferase (GNAT) family NRL09_13040 PF01842 ACT domain NRL09_13040 PF00696 Amino acid kinase family NRL09_13050 PF00884 Sulfatase NRL09_13055 PF01906 Putative heavy-metal-binding NRL09_13060 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_13060 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_13060 PF01610 Transposase NRL09_13065 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL09_13070 PF05728 Uncharacterised protein family (UPF0227) NRL09_13075 PF08439 Oligopeptidase F NRL09_13075 PF01432 Peptidase family M3 NRL09_13080 PF01432 Peptidase family M3 NRL09_13080 PF08439 Oligopeptidase F NRL09_13085 PF05661 Protein of unknown function (DUF808) NRL09_13095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL09_13095 PF08447 PAS fold NRL09_13095 PF13426 PAS domain NRL09_13100 PF02355 Protein export membrane protein NRL09_13100 PF07549 SecD/SecF GG Motif NRL09_13105 PF07549 SecD/SecF GG Motif NRL09_13105 PF13721 SecD export protein N-terminal TM region NRL09_13105 PF02355 Protein export membrane protein NRL09_13140 PF01230 HIT domain NRL09_13145 PF00672 HAMP domain NRL09_13145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL09_13155 PF01979 Amidohydrolase family NRL09_13175 PF00375 Sodium:dicarboxylate symporter family NRL09_13185 PF01610 Transposase NRL09_13185 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_13185 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_13190 PF00842 Alanine racemase, C-terminal domain NRL09_13190 PF01168 Alanine racemase, N-terminal domain NRL09_13195 PF03741 Integral membrane protein TerC family NRL09_13200 PF00005 ABC transporter NRL09_13200 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRL09_13205 PF00005 ABC transporter NRL09_13205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRL09_13210 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_13210 PF12911 N-terminal TM domain of oligopeptide transport permease C NRL09_13215 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_13220 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRL09_13225 PF01914 MarC family integral membrane protein NRL09_13230 PF00465 Iron-containing alcohol dehydrogenase NRL09_13230 PF00171 Aldehyde dehydrogenase family NRL09_13235 PF00072 Response regulator receiver domain NRL09_13240 PF07694 5TMR of 5TMR-LYT NRL09_13240 PF06580 Histidine kinase NRL09_13245 PF04397 LytTr DNA-binding domain NRL09_13245 PF00072 Response regulator receiver domain NRL09_13250 PF02554 Carbon starvation protein CstA NRL09_13255 PF12794 Mechanosensitive ion channel inner membrane domain 1 NRL09_13255 PF12795 Mechanosensitive ion channel porin domain NRL09_13255 PF00924 Mechanosensitive ion channel NRL09_13260 PF07282 Putative transposase DNA-binding domain NRL09_13260 PF01385 Probable transposase NRL09_13260 PF12323 Helix-turn-helix domain NRL09_13270 PF11742 Protein of unknown function (DUF3302) NRL09_13275 PF00529 HlyD membrane-fusion protein of T1SS NRL09_13275 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRL09_13280 PF00271 Helicase conserved C-terminal domain NRL09_13280 PF04851 Type III restriction enzyme, res subunit NRL09_13285 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family NRL09_13290 PF00462 Glutaredoxin NRL09_13300 PF00155 Aminotransferase class I and II NRL09_13305 PF03606 C4-dicarboxylate anaerobic carrier NRL09_13315 PF07055 Enoyl reductase FAD binding domain NRL09_13315 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NRL09_13315 PF12241 Trans-2-enoyl-CoA reductase catalytic region NRL09_13330 PF00672 HAMP domain NRL09_13330 PF17200 Single Cache domain 2 NRL09_13330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL09_13340 PF00892 EamA-like transporter family NRL09_13345 PF02508 Rnf-Nqr subunit, membrane protein NRL09_13350 PF04060 Putative Fe-S cluster NRL09_13355 PF10531 SLBB domain NRL09_13355 PF13375 RnfC Barrel sandwich hybrid domain NRL09_13355 PF12838 4Fe-4S dicluster domain NRL09_13355 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NRL09_13360 PF03116 NQR2, RnfD, RnfE family NRL09_13365 PF04205 FMN-binding domain NRL09_13370 PF02508 Rnf-Nqr subunit, membrane protein NRL09_13375 PF10576 Iron-sulfur binding domain of endonuclease III NRL09_13375 PF00633 Helix-hairpin-helix motif NRL09_13375 PF00730 HhH-GPD superfamily base excision DNA repair protein NRL09_13380 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRL09_13385 PF00672 HAMP domain NRL09_13385 PF12729 Four helix bundle sensory module for signal transduction NRL09_13385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL09_13390 PF02535 ZIP Zinc transporter NRL09_13395 PF01048 Phosphorylase superfamily NRL09_13405 PF01497 Periplasmic binding protein NRL09_13410 PF02719 Polysaccharide biosynthesis protein NRL09_13415 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NRL09_13425 PF02348 Cytidylyltransferase NRL09_13430 PF00202 Aminotransferase class-III NRL09_13445 PF03102 NeuB family NRL09_13445 PF08666 SAF domain NRL09_13485 PF02561 Flagellar protein FliS NRL09_13490 PF07196 Flagellin hook IN motif NRL09_13490 PF07195 Flagellar hook-associated protein 2 C-terminus NRL09_13490 PF02465 Flagellar hook-associated protein 2 N-terminus NRL09_13500 PF00700 Bacterial flagellin C-terminal helical region NRL09_13500 PF07196 Flagellin hook IN motif NRL09_13500 PF00669 Bacterial flagellin N-terminal helical region NRL09_13520 PF01609 Transposase DDE domain NRL09_13525 PF03458 UPF0126 domain NRL09_13535 PF02568 Thiamine biosynthesis protein (ThiI) NRL09_13535 PF02926 THUMP domain NRL09_13545 PF06832 Penicillin-Binding Protein C-terminus Family NRL09_13545 PF00905 Penicillin binding protein transpeptidase domain NRL09_13545 PF00912 Transglycosylase NRL09_13550 PF11974 Bacterial alpha-2-macroglobulin MG3 domain NRL09_13550 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain NRL09_13550 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain NRL09_13550 PF01835 MG2 domain NRL09_13550 PF07678 A-macroglobulin TED domain NRL09_13550 PF07703 Alpha-2-macroglobulin bait region domain NRL09_13550 PF00207 Alpha-2-macroglobulin family NRL09_13550 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain NRL09_13550 PF17962 Bacterial macroglobulin domain 6 NRL09_13555 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL09_13555 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NRL09_13560 PF03707 Bacterial signalling protein N terminal repeat NRL09_13560 PF00990 Diguanylate cyclase, GGDEF domain NRL09_13560 PF00563 EAL domain NRL09_13565 PF04055 Radical SAM superfamily NRL09_13575 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_13580 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_13585 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL09_13590 PF00005 ABC transporter NRL09_13595 PF03956 Lysine exporter LysO NRL09_13600 PF01979 Amidohydrolase family NRL09_13605 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL09_13615 PF04336 Acyl carrier protein phosphodiesterase NRL09_13630 PF03960 ArsC family NRL09_13635 PF00578 AhpC/TSA family NRL09_13640 PF13181 Tetratricopeptide repeat NRL09_13640 PF01435 Peptidase family M48 NRL09_13645 PF01206 Sulfurtransferase TusA NRL09_13650 PF01594 AI-2E family transporter NRL09_13660 PF00561 alpha/beta hydrolase fold NRL09_13665 PF03976 Polyphosphate kinase 2 (PPK2) NRL09_13670 PF00005 ABC transporter NRL09_13670 PF08402 TOBE domain NRL09_13675 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_13680 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_13680 PF14785 Maltose transport system permease protein MalF P2 domain NRL09_13685 PF01547 Bacterial extracellular solute-binding protein NRL09_13690 PF04245 37-kD nucleoid-associated bacterial protein NRL09_13695 PF07208 Protein of unknown function (DUF1414) NRL09_13700 PF11893 Domain of unknown function (DUF3413) NRL09_13700 PF00884 Sulfatase NRL09_13705 PF07715 TonB-dependent Receptor Plug Domain NRL09_13705 PF00593 TonB dependent receptor NRL09_13710 PF00326 Prolyl oligopeptidase family NRL09_13710 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NRL09_13730 PF03974 Ecotin NRL09_13735 PF04219 Protein of unknown function, DUF NRL09_13740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_13740 PF03466 LysR substrate binding domain NRL09_13745 PF02153 Prephenate dehydrogenase NRL09_13745 PF01817 Chorismate mutase type II NRL09_13750 PF00793 DAHP synthetase I family NRL09_13755 PF03009 Glycerophosphoryl diester phosphodiesterase family NRL09_13760 PF01266 FAD dependent oxidoreductase NRL09_13760 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NRL09_13765 PF00455 DeoR C terminal sensor domain NRL09_13765 PF08220 DeoR-like helix-turn-helix domain NRL09_13770 PF07690 Major Facilitator Superfamily NRL09_13775 PF12323 Helix-turn-helix domain NRL09_13785 PF00230 Major intrinsic protein NRL09_13790 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NRL09_13790 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NRL09_13795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_13795 PF03466 LysR substrate binding domain NRL09_13815 PF00248 Aldo/keto reductase family NRL09_13820 PF07690 Major Facilitator Superfamily NRL09_13830 PF02322 Cytochrome bd terminal oxidase subunit II NRL09_13835 PF01654 Cytochrome bd terminal oxidase subunit I NRL09_13840 PF00392 Bacterial regulatory proteins, gntR family NRL09_13840 PF00155 Aminotransferase class I and II NRL09_13850 PF04391 Protein of unknown function (DUF533) NRL09_13860 PF10689 Protein of unknown function (DUF2496) NRL09_13870 PF03466 LysR substrate binding domain NRL09_13870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_13880 PF07690 Major Facilitator Superfamily NRL09_13885 PF01479 S4 domain NRL09_13885 PF00849 RNA pseudouridylate synthase NRL09_13890 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NRL09_13890 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NRL09_13900 PF12323 Helix-turn-helix domain NRL09_13900 PF01385 Probable transposase NRL09_13900 PF07282 Putative transposase DNA-binding domain NRL09_13920 PF04851 Type III restriction enzyme, res subunit NRL09_13920 PF00271 Helicase conserved C-terminal domain NRL09_13925 PF00300 Histidine phosphatase superfamily (branch 1) NRL09_13930 PF03707 Bacterial signalling protein N terminal repeat NRL09_13930 PF00990 Diguanylate cyclase, GGDEF domain NRL09_13930 PF00563 EAL domain NRL09_13945 PF17810 Arginine decarboxylase helical bundle domain NRL09_13945 PF17944 Arginine decarboxylase C-terminal helical extension NRL09_13945 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NRL09_13950 PF01546 Peptidase family M20/M25/M40 NRL09_13950 PF07687 Peptidase dimerisation domain NRL09_13965 PF05221 S-adenosyl-L-homocysteine hydrolase NRL09_13965 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NRL09_13975 PF04264 YceI-like domain NRL09_13980 PF03466 LysR substrate binding domain NRL09_13980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_13990 PF01268 Formate--tetrahydrofolate ligase NRL09_13995 PF17200 Single Cache domain 2 NRL09_13995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL09_13995 PF00672 HAMP domain NRL09_14000 PF01227 GTP cyclohydrolase I NRL09_14005 PF03453 MoeA N-terminal region (domain I and II) NRL09_14005 PF03454 MoeA C-terminal region (domain IV) NRL09_14005 PF00994 Probable molybdopterin binding domain NRL09_14010 PF00899 ThiF family NRL09_14015 PF12697 Alpha/beta hydrolase family NRL09_14020 PF00005 ABC transporter NRL09_14020 PF03459 TOBE domain NRL09_14025 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_14035 PF02391 MoaE protein NRL09_14040 PF02597 ThiS family NRL09_14045 PF01967 MoaC family NRL09_14050 PF00994 Probable molybdopterin binding domain NRL09_14055 PF03264 NapC/NirT cytochrome c family, N-terminal region NRL09_14060 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) NRL09_14065 PF13237 4Fe-4S dicluster domain NRL09_14065 PF12801 4Fe-4S binding domain NRL09_14070 PF12800 4Fe-4S binding domain NRL09_14070 PF12838 4Fe-4S dicluster domain NRL09_14075 PF10518 TAT (twin-arginine translocation) pathway signal sequence NRL09_14075 PF01568 Molydopterin dinucleotide binding domain NRL09_14075 PF00384 Molybdopterin oxidoreductase NRL09_14075 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NRL09_14085 PF00037 4Fe-4S binding domain NRL09_14085 PF13187 4Fe-4S dicluster domain NRL09_14085 PF12800 4Fe-4S binding domain NRL09_14090 PF04055 Radical SAM superfamily NRL09_14090 PF06463 Molybdenum Cofactor Synthesis C NRL09_14095 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term NRL09_14095 PF07730 Histidine kinase NRL09_14095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_14095 PF00672 HAMP domain NRL09_14100 PF00072 Response regulator receiver domain NRL09_14100 PF00196 Bacterial regulatory proteins, luxR family NRL09_14115 PF00072 Response regulator receiver domain NRL09_14115 PF09456 RcsC Alpha-Beta-Loop (ABL) NRL09_14115 PF00512 His Kinase A (phospho-acceptor) domain NRL09_14115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_14125 PF01933 Uncharacterised protein family UPF0052 NRL09_14135 PF13230 Glutamine amidotransferases class-II NRL09_14140 PF13580 SIS domain NRL09_14145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRL09_14145 PF02770 Acyl-CoA dehydrogenase, middle domain NRL09_14145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRL09_14145 PF09317 Domain of unknown function (DUF1974) NRL09_14160 PF00929 Exonuclease NRL09_14165 PF00075 RNase H NRL09_14170 PF08241 Methyltransferase domain NRL09_14175 PF16123 Hydroxyacylglutathione hydrolase C-terminus NRL09_14175 PF00753 Metallo-beta-lactamase superfamily NRL09_14185 PF01464 Transglycosylase SLT domain NRL09_14185 PF01476 LysM domain NRL09_14190 PF03372 Endonuclease/Exonuclease/phosphatase family NRL09_14200 PF03061 Thioesterase superfamily NRL09_14210 PF00356 Bacterial regulatory proteins, lacI family NRL09_14215 PF01464 Transglycosylase SLT domain NRL09_14215 PF14718 Soluble lytic murein transglycosylase L domain NRL09_14220 PF03707 Bacterial signalling protein N terminal repeat NRL09_14220 PF00990 Diguanylate cyclase, GGDEF domain NRL09_14220 PF00563 EAL domain NRL09_14225 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NRL09_14245 PF04357 TamB, inner membrane protein subunit of TAM complex NRL09_14250 PF01103 Surface antigen NRL09_14250 PF07244 Surface antigen variable number repeat NRL09_14250 PF17243 POTRA domain TamA domain 1 NRL09_14270 PF02627 Carboxymuconolactone decarboxylase family NRL09_14275 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NRL09_14275 PF00403 Heavy-metal-associated domain NRL09_14275 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL09_14280 PF13416 Bacterial extracellular solute-binding protein NRL09_14290 PF00005 ABC transporter NRL09_14295 PF01066 CDP-alcohol phosphatidyltransferase NRL09_14300 PF13406 Transglycosylase SLT domain NRL09_14305 PF01047 MarR family NRL09_14315 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NRL09_14315 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NRL09_14315 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NRL09_14315 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NRL09_14320 PF17206 SeqA protein N-terminal domain NRL09_14320 PF03925 SeqA protein C-terminal domain NRL09_14325 PF12697 Alpha/beta hydrolase family NRL09_14335 PF01402 Ribbon-helix-helix protein, copG family NRL09_14340 PF00258 Flavodoxin NRL09_14350 PF01475 Ferric uptake regulator family NRL09_14355 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_14355 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_14355 PF01610 Transposase NRL09_14360 PF00749 tRNA synthetases class I (E and Q), catalytic domain NRL09_14360 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain NRL09_14365 PF03173 Putative carbohydrate binding domain NRL09_14365 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain NRL09_14365 PF00728 Glycosyl hydrolase family 20, catalytic domain NRL09_14365 PF02838 Glycosyl hydrolase family 20, domain 2 NRL09_14370 PF00367 phosphotransferase system, EIIB NRL09_14370 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NRL09_14370 PF02378 Phosphotransferase system, EIIC NRL09_14375 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NRL09_14380 PF01979 Amidohydrolase family NRL09_14385 PF00480 ROK family NRL09_14385 PF01047 MarR family NRL09_14390 PF08019 Phosphoethanolamine transferase EptA/EptB NRL09_14390 PF00884 Sulfatase NRL09_14395 PF01709 Transcriptional regulator NRL09_14400 PF02938 GAD domain NRL09_14400 PF00152 tRNA synthetases class II (D, K and N) NRL09_14400 PF01336 OB-fold nucleic acid binding domain NRL09_14405 PF01904 Protein of unknown function DUF72 NRL09_14410 PF13649 Methyltransferase domain NRL09_14415 PF08003 Protein of unknown function (DUF1698) NRL09_14435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_14435 PF03466 LysR substrate binding domain NRL09_14440 PF00877 NlpC/P60 family NRL09_14450 PF00171 Aldehyde dehydrogenase family NRL09_14455 PF00440 Bacterial regulatory proteins, tetR family NRL09_14455 PF08359 YsiA-like protein, C-terminal region NRL09_14465 PF00465 Iron-containing alcohol dehydrogenase NRL09_14470 PF00291 Pyridoxal-phosphate dependent enzyme NRL09_14490 PF01554 MatE NRL09_14500 PF04325 Protein of unknown function (DUF465) NRL09_14505 PF10371 Domain of unknown function NRL09_14505 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase NRL09_14505 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg NRL09_14505 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRL09_14505 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II NRL09_14510 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NRL09_14510 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NRL09_14510 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL09_14515 PF03473 MOSC domain NRL09_14515 PF03476 MOSC N-terminal beta barrel domain NRL09_14515 PF03473 MOSC domain NRL09_14515 PF00111 2Fe-2S iron-sulfur cluster binding domain NRL09_14515 PF03476 MOSC N-terminal beta barrel domain NRL09_14515 PF00111 2Fe-2S iron-sulfur cluster binding domain NRL09_14520 PF01435 Peptidase family M48 NRL09_14530 PF08241 Methyltransferase domain NRL09_14530 PF12697 Alpha/beta hydrolase family NRL09_14535 PF00155 Aminotransferase class I and II NRL09_14540 PF04055 Radical SAM superfamily NRL09_14540 PF06968 Biotin and Thiamin Synthesis associated domain NRL09_14545 PF00202 Aminotransferase class-III NRL09_14560 PF00152 tRNA synthetases class II (D, K and N) NRL09_14560 PF01336 OB-fold nucleic acid binding domain NRL09_14565 PF03605 Anaerobic c4-dicarboxylate membrane transporter NRL09_14575 PF07687 Peptidase dimerisation domain NRL09_14575 PF01546 Peptidase family M20/M25/M40 NRL09_14580 PF03606 C4-dicarboxylate anaerobic carrier NRL09_14590 PF03960 ArsC family NRL09_14595 PF07687 Peptidase dimerisation domain NRL09_14595 PF01546 Peptidase family M20/M25/M40 NRL09_14600 PF02557 D-alanyl-D-alanine carboxypeptidase NRL09_14610 PF02080 TrkA-C domain NRL09_14610 PF00999 Sodium/hydrogen exchanger family NRL09_14610 PF03471 Transporter associated domain NRL09_14620 PF01810 LysE type translocator NRL09_14625 PF00672 HAMP domain NRL09_14625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL09_14630 PF07509 Protein of unknown function (DUF1523) NRL09_14645 PF01156 Inosine-uridine preferring nucleoside hydrolase NRL09_14650 PF00849 RNA pseudouridylate synthase NRL09_14655 PF01048 Phosphorylase superfamily NRL09_14660 PF00465 Iron-containing alcohol dehydrogenase NRL09_14665 PF04355 SmpA / OmlA family NRL09_14670 PF13460 NAD(P)H-binding NRL09_14675 PF03658 RnfH family Ubiquitin NRL09_14680 PF03364 Polyketide cyclase / dehydrase and lipid transport NRL09_14685 PF01668 SmpB protein NRL09_14695 PF00392 Bacterial regulatory proteins, gntR family NRL09_14695 PF07729 FCD domain NRL09_14700 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NRL09_14710 PF03480 Bacterial extracellular solute-binding protein, family 7 NRL09_14715 PF02614 Glucuronate isomerase NRL09_14720 PF01232 Mannitol dehydrogenase Rossmann domain NRL09_14720 PF08125 Mannitol dehydrogenase C-terminal domain NRL09_14725 PF08666 SAF domain NRL09_14725 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus NRL09_14730 PF10688 Bacterial inner membrane protein NRL09_14735 PF00294 pfkB family carbohydrate kinase NRL09_14740 PF01081 KDPG and KHG aldolase NRL09_14755 PF13508 Acetyltransferase (GNAT) domain NRL09_14775 PF01546 Peptidase family M20/M25/M40 NRL09_14780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_14780 PF03466 LysR substrate binding domain NRL09_14785 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region NRL09_14785 PF01243 Pyridoxamine 5'-phosphate oxidase NRL09_14800 PF01189 16S rRNA methyltransferase RsmB/F NRL09_14800 PF01029 NusB family NRL09_14805 PF00462 Glutaredoxin NRL09_14810 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NRL09_14810 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NRL09_14815 PF04333 MlaA lipoprotein NRL09_14825 PF03918 Cytochrome C biogenesis protein NRL09_14830 PF08534 Redoxin NRL09_14835 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal NRL09_14835 PF01578 Cytochrome C assembly protein NRL09_14840 PF03100 CcmE NRL09_14845 PF04995 Heme exporter protein D (CcmD) NRL09_14850 PF01578 Cytochrome C assembly protein NRL09_14855 PF03379 CcmB protein NRL09_14860 PF00005 ABC transporter NRL09_14870 PF01584 CheW-like domain NRL09_14880 PF13614 AAA domain NRL09_14885 PF13677 Membrane MotB of proton-channel complex MotA/MotB NRL09_14885 PF00691 OmpA family NRL09_14890 PF01618 MotA/TolQ/ExbB proton channel family NRL09_14895 PF01339 CheB methylesterase NRL09_14895 PF00072 Response regulator receiver domain NRL09_14900 PF00072 Response regulator receiver domain NRL09_14900 PF01627 Hpt domain NRL09_14900 PF02895 Signal transducing histidine kinase, homodimeric domain NRL09_14900 PF01584 CheW-like domain NRL09_14900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_14905 PF04344 Chemotaxis phosphatase, CheZ NRL09_14910 PF00072 Response regulator receiver domain NRL09_14915 PF04542 Sigma-70 region 2 NRL09_14915 PF04539 Sigma-70 region 3 NRL09_14915 PF04545 Sigma-70, region 4 NRL09_14920 PF10609 NUBPL iron-transfer P-loop NTPase NRL09_14925 PF00448 SRP54-type protein, GTPase domain NRL09_14930 PF00771 FHIPEP family NRL09_14935 PF01312 FlhB HrpN YscU SpaS Family NRL09_14940 PF01311 Bacterial export proteins, family 1 NRL09_14945 PF01313 Bacterial export proteins, family 3 NRL09_14950 PF00813 FliP family NRL09_14955 PF04347 Flagellar biosynthesis protein, FliO NRL09_14960 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NRL09_14965 PF02154 Flagellar motor switch protein FliM NRL09_14965 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NRL09_14985 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NRL09_14985 PF18269 T3SS EscN ATPase C-terminal domain NRL09_14995 PF14842 FliG N-terminal domain NRL09_14995 PF14841 FliG middle domain NRL09_14995 PF01706 FliG C-terminal domain NRL09_15000 PF01514 Secretory protein of YscJ/FliF family NRL09_15000 PF08345 Flagellar M-ring protein C-terminal NRL09_15005 PF02049 Flagellar hook-basal body complex protein FliE NRL09_15010 PF01609 Transposase DDE domain NRL09_15010 PF13006 Insertion element 4 transposase N-terminal NRL09_15020 PF03960 ArsC family NRL09_15025 PF01758 Sodium Bile acid symporter family NRL09_15030 PF01022 Bacterial regulatory protein, arsR family NRL09_15035 PF00072 Response regulator receiver domain NRL09_15075 PF01609 Transposase DDE domain NRL09_15095 PF00892 EamA-like transporter family NRL09_15100 PF00884 Sulfatase NRL09_15100 PF08019 Phosphoethanolamine transferase EptA/EptB NRL09_15110 PF01609 Transposase DDE domain NRL09_15125 PF08019 Phosphoethanolamine transferase EptA/EptB NRL09_15125 PF00884 Sulfatase NRL09_15130 PF01219 Prokaryotic diacylglycerol kinase NRL09_15135 PF09722 Protein of unknown function (DUF2384) NRL09_15165 PF13808 DDE_Tnp_1-associated NRL09_15165 PF01609 Transposase DDE domain NRL09_15170 PF04717 Type VI secretion system, phage-baseplate injector NRL09_15175 PF01609 Transposase DDE domain NRL09_15175 PF05598 Transposase domain (DUF772) NRL09_15180 PF00563 EAL domain NRL09_15180 PF00990 Diguanylate cyclase, GGDEF domain NRL09_15180 PF05231 MASE1 NRL09_15180 PF08447 PAS fold NRL09_15180 PF08448 PAS fold NRL09_15180 PF13426 PAS domain NRL09_15185 PF05598 Transposase domain (DUF772) NRL09_15185 PF01609 Transposase DDE domain NRL09_15190 PF00919 Uncharacterized protein family UPF0004 NRL09_15190 PF18693 TRAM domain NRL09_15190 PF04055 Radical SAM superfamily NRL09_15195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRL09_15200 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_15205 PF12911 N-terminal TM domain of oligopeptide transport permease C NRL09_15205 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_15210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRL09_15210 PF00005 ABC transporter NRL09_15215 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRL09_15215 PF00005 ABC transporter NRL09_15225 PF01869 BadF/BadG/BcrA/BcrD ATPase family NRL09_15230 PF00728 Glycosyl hydrolase family 20, catalytic domain NRL09_15230 PF02838 Glycosyl hydrolase family 20, domain 2 NRL09_15235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL09_15235 PF08447 PAS fold NRL09_15250 PF08272 Topoisomerase I zinc-ribbon-like NRL09_15250 PF01131 DNA topoisomerase NRL09_15250 PF01751 Toprim domain NRL09_15250 PF01396 Topoisomerase DNA binding C4 zinc finger NRL09_15255 PF04996 Succinylarginine dihydrolase NRL09_15260 PF08496 Peptidase family S49 N-terminal NRL09_15260 PF01343 Peptidase family S49 NRL09_15265 PF00106 short chain dehydrogenase NRL09_15275 PF07690 Major Facilitator Superfamily NRL09_15280 PF00155 Aminotransferase class I and II NRL09_15290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_15290 PF03466 LysR substrate binding domain NRL09_15295 PF00709 Adenylosuccinate synthetase NRL09_15300 PF01161 Phosphatidylethanolamine-binding protein NRL09_15310 PF01204 Trehalase NRL09_15315 PF00579 tRNA synthetases class I (W and Y) NRL09_15320 PF01476 LysM domain NRL09_15320 PF08525 Opacity-associated protein A N-terminal motif NRL09_15320 PF01551 Peptidase family M23 NRL09_15325 PF03702 Anhydro-N-acetylmuramic acid kinase NRL09_15340 PF01042 Endoribonuclease L-PSP NRL09_15355 PF02779 Transketolase, pyrimidine binding domain NRL09_15355 PF02780 Transketolase, C-terminal domain NRL09_15355 PF00456 Transketolase, thiamine diphosphate binding domain NRL09_15360 PF02773 S-adenosylmethionine synthetase, C-terminal domain NRL09_15360 PF02772 S-adenosylmethionine synthetase, central domain NRL09_15360 PF00438 S-adenosylmethionine synthetase, N-terminal domain NRL09_15365 PF10263 SprT-like family NRL09_15365 PF17283 SprT-like zinc ribbon domain NRL09_15370 PF04231 Endonuclease I NRL09_15375 PF04452 RNA methyltransferase NRL09_15380 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain NRL09_15380 PF02951 Prokaryotic glutathione synthetase, N-terminal domain NRL09_15385 PF02622 Uncharacterized ACR, COG1678 NRL09_15390 PF03652 Holliday junction resolvase NRL09_15395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_15395 PF03466 LysR substrate binding domain NRL09_15400 PF07690 Major Facilitator Superfamily NRL09_15405 PF00144 Beta-lactamase NRL09_15410 PF01235 Sodium:alanine symporter family NRL09_15415 PF00923 Transaldolase/Fructose-6-phosphate aldolase NRL09_15430 PF03167 Uracil DNA glycosylase superfamily NRL09_15435 PF01228 Glycine radical NRL09_15440 PF00375 Sodium:dicarboxylate symporter family NRL09_15445 PF00793 DAHP synthetase I family NRL09_15450 PF13369 Transglutaminase-like superfamily NRL09_15460 PF17827 PrmC N-terminal domain NRL09_15460 PF13847 Methyltransferase domain NRL09_15465 PF00472 RF-1 domain NRL09_15465 PF03462 PCRF domain NRL09_15470 PF01488 Shikimate / quinate 5-dehydrogenase NRL09_15470 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NRL09_15470 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NRL09_15475 PF03550 Outer membrane lipoprotein LolB NRL09_15480 PF00288 GHMP kinases N terminal domain NRL09_15480 PF08544 GHMP kinases C terminal NRL09_15490 PF14572 Phosphoribosyl synthetase-associated domain NRL09_15490 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NRL09_15495 PF01195 Peptidyl-tRNA hydrolase NRL09_15500 PF01926 50S ribosome-binding GTPase NRL09_15500 PF06071 Protein of unknown function (DUF933) NRL09_15505 PF01610 Transposase NRL09_15505 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_15505 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_15540 PF02080 TrkA-C domain NRL09_15540 PF03600 Citrate transporter NRL09_15545 PF04266 ASCH domain NRL09_15550 PF07859 alpha/beta hydrolase fold NRL09_15560 PF07690 Major Facilitator Superfamily NRL09_15565 PF13419 Haloacid dehalogenase-like hydrolase NRL09_15595 PF01609 Transposase DDE domain NRL09_15620 PF00171 Aldehyde dehydrogenase family NRL09_15625 PF04958 Arginine N-succinyltransferase beta subunit NRL09_15630 PF00202 Aminotransferase class-III NRL09_15635 PF00117 Glutamine amidotransferase class-I NRL09_15645 PF00579 tRNA synthetases class I (W and Y) NRL09_15650 PF13419 Haloacid dehalogenase-like hydrolase NRL09_15655 PF00834 Ribulose-phosphate 3 epimerase family NRL09_15660 PF02086 D12 class N6 adenine-specific DNA methyltransferase NRL09_15665 PF05036 Sporulation related domain NRL09_15670 PF01761 3-dehydroquinate synthase NRL09_15675 PF01202 Shikimate kinase NRL09_15680 PF11741 AMIN domain NRL09_15680 PF00263 Bacterial type II and III secretion system protein NRL09_15680 PF03958 Bacterial type II/III secretion system short domain NRL09_15680 PF07660 Secretin and TonB N terminus short domain NRL09_15690 PF04350 Pilus assembly protein, PilO NRL09_15700 PF11104 Type IV pilus assembly protein PilM; NRL09_15705 PF00905 Penicillin binding protein transpeptidase domain NRL09_15705 PF00912 Transglycosylase NRL09_15705 PF17092 Penicillin-binding protein OB-like domain NRL09_15710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_15710 PF03466 LysR substrate binding domain NRL09_15720 PF13006 Insertion element 4 transposase N-terminal NRL09_15720 PF01609 Transposase DDE domain NRL09_15730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_15730 PF03466 LysR substrate binding domain NRL09_15745 PF01476 LysM domain NRL09_15745 PF08525 Opacity-associated protein A N-terminal motif NRL09_15745 PF01551 Peptidase family M23 NRL09_15755 PF00924 Mechanosensitive ion channel NRL09_15755 PF12795 Mechanosensitive ion channel porin domain NRL09_15755 PF12794 Mechanosensitive ion channel inner membrane domain 1 NRL09_15760 PF03009 Glycerophosphoryl diester phosphodiesterase family NRL09_15765 PF02743 Cache domain NRL09_15765 PF00672 HAMP domain NRL09_15765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL09_15770 PF02910 Fumarate reductase flavoprotein C-term NRL09_15770 PF00890 FAD binding domain NRL09_15775 PF13085 2Fe-2S iron-sulfur cluster binding domain NRL09_15775 PF13183 4Fe-4S dicluster domain NRL09_15780 PF02300 Fumarate reductase subunit C NRL09_15785 PF02313 Fumarate reductase subunit D NRL09_15800 PF06224 Winged helix DNA-binding domain NRL09_15805 PF13847 Methyltransferase domain NRL09_15815 PF00501 AMP-binding enzyme NRL09_15825 PF00106 short chain dehydrogenase NRL09_15835 PF00072 Response regulator receiver domain NRL09_15835 PF00486 Transcriptional regulatory protein, C terminal NRL09_15840 PF08521 Two-component sensor kinase N-terminal NRL09_15840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_15840 PF00512 His Kinase A (phospho-acceptor) domain NRL09_15845 PF08443 RimK-like ATP-grasp domain NRL09_15845 PF18030 RimK PreATP-grasp domain NRL09_15850 PF00478 IMP dehydrogenase / GMP reductase domain NRL09_15860 PF09285 Elongation factor P, C-terminal NRL09_15860 PF08207 Elongation factor P (EF-P) KOW-like domain NRL09_15860 PF01132 Elongation factor P (EF-P) OB domain NRL09_15865 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_15870 PF00005 ABC transporter NRL09_15870 PF09383 NIL domain NRL09_15875 PF03180 NLPA lipoprotein NRL09_15880 PF14226 non-haem dioxygenase in morphine synthesis N-terminal NRL09_15880 PF03171 2OG-Fe(II) oxygenase superfamily NRL09_15890 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NRL09_15890 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRL09_15900 PF17152 Periplasmic sensor domain NRL09_15900 PF00990 Diguanylate cyclase, GGDEF domain NRL09_15910 PF00990 Diguanylate cyclase, GGDEF domain NRL09_15915 PF13419 Haloacid dehalogenase-like hydrolase NRL09_15925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_15925 PF03466 LysR substrate binding domain NRL09_15930 PF00313 'Cold-shock' DNA-binding domain NRL09_15935 PF00857 Isochorismatase family NRL09_15940 PF01494 FAD binding domain NRL09_15945 PF04055 Radical SAM superfamily NRL09_15945 PF01938 TRAM domain NRL09_15945 PF00919 Uncharacterized protein family UPF0004 NRL09_15950 PF02562 PhoH-like protein NRL09_15955 PF02130 Uncharacterized protein family UPF0054 NRL09_15960 PF00571 CBS domain NRL09_15960 PF03471 Transporter associated domain NRL09_15965 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_15965 PF01610 Transposase NRL09_15965 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_15970 PF00795 Carbon-nitrogen hydrolase NRL09_15975 PF07295 Zinc-ribbon containing domain NRL09_15980 PF08264 Anticodon-binding domain of tRNA NRL09_15980 PF00133 tRNA synthetases class I (I, L, M and V) NRL09_15980 PF13603 Leucyl-tRNA synthetase, Domain 2 NRL09_16000 PF01467 Cytidylyltransferase-like NRL09_16010 PF02590 Predicted SPOUT methyltransferase NRL09_16015 PF00905 Penicillin binding protein transpeptidase domain NRL09_16015 PF03717 Penicillin-binding Protein dimerisation domain NRL09_16020 PF01098 Cell cycle protein NRL09_16025 PF13406 Transglycosylase SLT domain NRL09_16030 PF03330 Lytic transglycolase NRL09_16030 PF05036 Sporulation related domain NRL09_16035 PF07943 Penicillin-binding protein 5, C-terminal domain NRL09_16035 PF00768 D-alanyl-D-alanine carboxypeptidase NRL09_16040 PF04359 Protein of unknown function (DUF493) NRL09_16045 PF03099 Biotin/lipoate A/B protein ligase family NRL09_16050 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family NRL09_16050 PF04055 Radical SAM superfamily NRL09_16060 PF02508 Rnf-Nqr subunit, membrane protein NRL09_16075 PF13411 MerR HTH family regulatory protein NRL09_16080 PF02272 DHHA1 domain NRL09_16080 PF17768 RecJ OB domain NRL09_16080 PF01368 DHH family NRL09_16090 PF01741 Large-conductance mechanosensitive channel, MscL NRL09_16095 PF02899 Phage integrase, N-terminal SAM-like domain NRL09_16095 PF00589 Phage integrase family NRL09_16100 PF00258 Flavodoxin NRL09_16105 PF01523 Putative modulator of DNA gyrase NRL09_16115 PF01523 Putative modulator of DNA gyrase NRL09_16130 PF17969 L,D-transpeptidase C-terminal domain NRL09_16130 PF03734 L,D-transpeptidase catalytic domain NRL09_16135 PF01136 Peptidase family U32 NRL09_16135 PF16325 Peptidase family U32 C-terminal domain NRL09_16140 PF12838 4Fe-4S dicluster domain NRL09_16145 PF06476 Protein of unknown function (DUF1090) NRL09_16150 PF02635 DsrE/DsrF-like family NRL09_16155 PF07690 Major Facilitator Superfamily NRL09_16160 PF00013 KH domain NRL09_16160 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NRL09_16160 PF01138 3' exoribonuclease family, domain 1 NRL09_16160 PF03725 3' exoribonuclease family, domain 2 NRL09_16160 PF00575 S1 RNA binding domain NRL09_16165 PF00312 Ribosomal protein S15 NRL09_16170 PF01509 TruB family pseudouridylate synthase (N terminal domain) NRL09_16170 PF16198 tRNA pseudouridylate synthase B C-terminal domain NRL09_16170 PF09157 Pseudouridine synthase II TruB, C-terminal NRL09_16175 PF02033 Ribosome-binding factor A NRL09_16180 PF00009 Elongation factor Tu GTP binding domain NRL09_16180 PF11987 Translation-initiation factor 2 NRL09_16180 PF08364 Bacterial translation initiation factor IF-2 associated region NRL09_16180 PF04760 Translation initiation factor IF-2, N-terminal region NRL09_16185 PF13184 NusA-like KH domain NRL09_16185 PF08529 NusA N-terminal domain NRL09_16185 PF00575 S1 RNA binding domain NRL09_16190 PF02576 RimP N-terminal domain NRL09_16190 PF17384 RimP C-terminal SH3 domain NRL09_16205 PF03840 Preprotein translocase SecG subunit NRL09_16210 PF00121 Triosephosphate isomerase NRL09_16215 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NRL09_16215 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NRL09_16215 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NRL09_16215 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NRL09_16220 PF00809 Pterin binding enzyme NRL09_16225 PF01434 Peptidase family M41 NRL09_16225 PF06480 FtsH Extracellular NRL09_16225 PF00004 ATPase family associated with various cellular activities (AAA) NRL09_16225 PF17862 AAA+ lid domain NRL09_16230 PF01728 FtsJ-like methyltransferase NRL09_16235 PF01985 CRS1 / YhbY (CRM) domain NRL09_16245 PF01272 Transcription elongation factor, GreA/GreB, C-term NRL09_16245 PF03449 Transcription elongation factor, N-terminal NRL09_16250 PF13677 Membrane MotB of proton-channel complex MotA/MotB NRL09_16250 PF00691 OmpA family NRL09_16260 PF02609 Exonuclease VII small subunit NRL09_16265 PF00348 Polyprenyl synthetase NRL09_16270 PF02780 Transketolase, C-terminal domain NRL09_16270 PF02779 Transketolase, pyrimidine binding domain NRL09_16270 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NRL09_16275 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_16275 PF12911 N-terminal TM domain of oligopeptide transport permease C NRL09_16280 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_16285 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRL09_16290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRL09_16290 PF00005 ABC transporter NRL09_16295 PF04608 Phosphatidylglycerophosphatase A NRL09_16300 PF00586 AIR synthase related protein, N-terminal domain NRL09_16300 PF02769 AIR synthase related protein, C-terminal domain NRL09_16305 PF01029 NusB family NRL09_16310 PF00885 6,7-dimethyl-8-ribityllumazine synthase NRL09_16315 PF00925 GTP cyclohydrolase II NRL09_16315 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NRL09_16320 PF00677 Lumazine binding domain NRL09_16325 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NRL09_16325 PF01872 RibD C-terminal domain NRL09_16330 PF03477 ATP cone domain NRL09_16340 PF00464 Serine hydroxymethyltransferase NRL09_16350 PF02613 Nitrate reductase delta subunit NRL09_16360 PF00563 EAL domain NRL09_16360 PF03707 Bacterial signalling protein N terminal repeat NRL09_16360 PF00990 Diguanylate cyclase, GGDEF domain NRL09_16365 PF13193 AMP-binding enzyme C-terminal domain NRL09_16365 PF00501 AMP-binding enzyme NRL09_16365 PF16177 Acetyl-coenzyme A synthetase N-terminus NRL09_16370 PF01220 Dehydroquinase class II NRL09_16375 PF00364 Biotin-requiring enzyme NRL09_16380 PF02785 Biotin carboxylase C-terminal domain NRL09_16380 PF00289 Biotin carboxylase, N-terminal domain NRL09_16380 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NRL09_16385 PF06196 Protein of unknown function (DUF997) NRL09_16390 PF00474 Sodium:solute symporter family NRL09_16395 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NRL09_16395 PF02378 Phosphotransferase system, EIIC NRL09_16395 PF00367 phosphotransferase system, EIIB NRL09_16400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_16400 PF03466 LysR substrate binding domain NRL09_16405 PF08240 Alcohol dehydrogenase GroES-like domain NRL09_16405 PF00107 Zinc-binding dehydrogenase NRL09_16415 PF00132 Bacterial transferase hexapeptide (six repeats) NRL09_16415 PF12464 Maltose acetyltransferase NRL09_16430 PF00881 Nitroreductase family NRL09_16435 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NRL09_16435 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL09_16440 PF01343 Peptidase family S49 NRL09_16455 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NRL09_16455 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NRL09_16460 PF07023 Protein of unknown function (DUF1315) NRL09_16465 PF00710 Asparaginase, N-terminal NRL09_16465 PF17763 Glutaminase/Asparaginase C-terminal domain NRL09_16470 PF03616 Sodium/glutamate symporter NRL09_16475 PF02743 Cache domain NRL09_16475 PF00672 HAMP domain NRL09_16475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL09_16485 PF01336 OB-fold nucleic acid binding domain NRL09_16485 PF00152 tRNA synthetases class II (D, K and N) NRL09_16490 PF02567 Phenazine biosynthesis-like protein NRL09_16495 PF00258 Flavodoxin NRL09_16495 PF00175 Oxidoreductase NAD-binding domain NRL09_16495 PF00667 FAD binding domain NRL09_16500 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NRL09_16500 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NRL09_16505 PF01507 Phosphoadenosine phosphosulfate reductase family NRL09_16510 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NRL09_16515 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_16520 PF00571 CBS domain NRL09_16520 PF00005 ABC transporter NRL09_16525 PF00186 Dihydrofolate reductase NRL09_16530 PF12821 Threonine/Serine exporter, ThrE NRL09_16535 PF06738 Putative threonine/serine exporter NRL09_16545 PF00994 Probable molybdopterin binding domain NRL09_16560 PF00194 Eukaryotic-type carbonic anhydrase NRL09_16565 PF04227 Indigoidine synthase A like protein NRL09_16570 PF00294 pfkB family carbohydrate kinase NRL09_16575 PF18267 Rubredoxin NAD+ reductase C-terminal domain NRL09_16575 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL09_16575 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NRL09_16575 PF04324 BFD-like [2Fe-2S] binding domain NRL09_16575 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NRL09_16575 PF13806 Rieske-like [2Fe-2S] domain NRL09_16580 PF18267 Rubredoxin NAD+ reductase C-terminal domain NRL09_16580 PF04324 BFD-like [2Fe-2S] binding domain NRL09_16580 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NRL09_16580 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL09_16580 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NRL09_16580 PF13806 Rieske-like [2Fe-2S] domain NRL09_16585 PF00005 ABC transporter NRL09_16590 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_16595 PF00005 ABC transporter NRL09_16605 PF10414 Sirohaem synthase dimerisation region NRL09_16605 PF14824 Sirohaem biosynthesis protein central NRL09_16605 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NRL09_16610 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NRL09_16610 PF00384 Molybdopterin oxidoreductase NRL09_16610 PF04324 BFD-like [2Fe-2S] binding domain NRL09_16610 PF01568 Molydopterin dinucleotide binding domain NRL09_16625 PF00582 Universal stress protein family NRL09_16635 PF00171 Aldehyde dehydrogenase family NRL09_16640 PF00696 Amino acid kinase family NRL09_16640 PF01472 PUA domain NRL09_16645 PF07417 Sigma factor-binding transcriptional regulator Crl NRL09_16650 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) NRL09_16655 PF00156 Phosphoribosyl transferase domain NRL09_16660 PF07687 Peptidase dimerisation domain NRL09_16660 PF01546 Peptidase family M20/M25/M40 NRL09_16665 PF00005 ABC transporter NRL09_16665 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRL09_16670 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRL09_16670 PF00005 ABC transporter NRL09_16675 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRL09_16680 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_16680 PF12911 N-terminal TM domain of oligopeptide transport permease C NRL09_16685 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_16690 PF07715 TonB-dependent Receptor Plug Domain NRL09_16690 PF00593 TonB dependent receptor NRL09_16700 PF01618 MotA/TolQ/ExbB proton channel family NRL09_16705 PF01618 MotA/TolQ/ExbB proton channel family NRL09_16710 PF02472 Biopolymer transport protein ExbD/TolR NRL09_16725 PF06483 Chitinase C NRL09_16725 PF00704 Glycosyl hydrolases family 18 NRL09_16760 PF00749 tRNA synthetases class I (E and Q), catalytic domain NRL09_16765 PF00749 tRNA synthetases class I (E and Q), catalytic domain NRL09_16770 PF00749 tRNA synthetases class I (E and Q), catalytic domain NRL09_16775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL09_16775 PF00672 HAMP domain NRL09_16785 PF00313 'Cold-shock' DNA-binding domain NRL09_16815 PF00929 Exonuclease NRL09_16820 PF03193 RsgA GTPase NRL09_16825 PF02666 Phosphatidylserine decarboxylase NRL09_16830 PF09905 DNA-binding protein VF530 NRL09_16860 PF06877 Regulator of ribonuclease activity B NRL09_16880 PF00561 alpha/beta hydrolase fold NRL09_16885 PF00664 ABC transporter transmembrane region NRL09_16885 PF00005 ABC transporter NRL09_16890 PF06004 Bacterial protein of unknown function (DUF903) NRL09_16895 PF00581 Rhodanese-like domain NRL09_16900 PF04960 Glutaminase NRL09_16905 PF04320 Protein with unknown function (DUF469) NRL09_16910 PF02390 Putative methyltransferase NRL09_16915 PF04389 Peptidase family M28 NRL09_16915 PF01483 Proprotein convertase P-domain NRL09_16920 PF00155 Aminotransferase class I and II NRL09_16925 PF12792 CSS motif domain associated with EAL NRL09_16925 PF00563 EAL domain NRL09_16930 PF01370 NAD dependent epimerase/dehydratase family NRL09_16930 PF08338 Domain of unknown function (DUF1731) NRL09_16940 PF00005 ABC transporter NRL09_16945 PF13472 GDSL-like Lipase/Acylhydrolase family NRL09_16950 PF00072 Response regulator receiver domain NRL09_16950 PF01584 CheW-like domain NRL09_16955 PF00267 Gram-negative porin NRL09_16960 PF00478 IMP dehydrogenase / GMP reductase domain NRL09_16960 PF00571 CBS domain NRL09_16965 PF00005 ABC transporter NRL09_16965 PF12848 ABC transporter NRL09_16975 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ NRL09_16980 PF03466 LysR substrate binding domain NRL09_16980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_16985 PF02525 Flavodoxin-like fold NRL09_17000 PF01609 Transposase DDE domain NRL09_17000 PF05598 Transposase domain (DUF772) NRL09_17005 PF13411 MerR HTH family regulatory protein NRL09_17015 PF00474 Sodium:solute symporter family NRL09_17020 PF17969 L,D-transpeptidase C-terminal domain NRL09_17020 PF03734 L,D-transpeptidase catalytic domain NRL09_17025 PF00924 Mechanosensitive ion channel NRL09_17030 PF00871 Acetokinase family NRL09_17035 PF04074 YhcH/YjgK/YiaL NRL09_17045 PF13302 Acetyltransferase (GNAT) domain NRL09_17050 PF13302 Acetyltransferase (GNAT) domain NRL09_17055 PF07504 Fungalysin/Thermolysin Propeptide Motif NRL09_17055 PF03413 Peptidase propeptide and YPEB domain NRL09_17055 PF01447 Thermolysin metallopeptidase, catalytic domain NRL09_17055 PF02868 Thermolysin metallopeptidase, alpha-helical domain NRL09_17055 PF04151 Bacterial pre-peptidase C-terminal domain NRL09_17060 PF03466 LysR substrate binding domain NRL09_17060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_17065 PF07690 Major Facilitator Superfamily NRL09_17085 PF02080 TrkA-C domain NRL09_17085 PF06826 Predicted Permease Membrane Region NRL09_17090 PF03006 Haemolysin-III related NRL09_17095 PF00282 Pyridoxal-dependent decarboxylase conserved domain NRL09_17100 PF04279 Intracellular septation protein A NRL09_17105 PF03795 YCII-related domain NRL09_17110 PF01609 Transposase DDE domain NRL09_17110 PF13006 Insertion element 4 transposase N-terminal NRL09_17115 PF00459 Inositol monophosphatase family NRL09_17125 PF00483 Nucleotidyl transferase NRL09_17130 PF00854 POT family NRL09_17135 PF00072 Response regulator receiver domain NRL09_17170 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRL09_17180 PF01207 Dihydrouridine synthase (Dus) NRL09_17185 PF02954 Bacterial regulatory protein, Fis family NRL09_17190 PF01810 LysE type translocator NRL09_17215 PF03060 Nitronate monooxygenase NRL09_17220 PF00445 Ribonuclease T2 family NRL09_17240 PF16527 Two-component sensor protein CpxA, periplasmic domain NRL09_17240 PF00672 HAMP domain NRL09_17240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_17240 PF00512 His Kinase A (phospho-acceptor) domain NRL09_17245 PF00486 Transcriptional regulatory protein, C terminal NRL09_17245 PF00072 Response regulator receiver domain NRL09_17250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRL09_17255 PF00005 ABC transporter NRL09_17255 PF02687 FtsX-like permease family NRL09_17255 PF12704 MacB-like periplasmic core domain NRL09_17265 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase NRL09_17285 PF03783 Curli production assembly/transport component CsgG NRL09_17295 PF05643 Putative bacterial lipoprotein (DUF799) NRL09_17300 PF00990 Diguanylate cyclase, GGDEF domain NRL09_17305 PF00271 Helicase conserved C-terminal domain NRL09_17305 PF00270 DEAD/DEAH box helicase NRL09_17310 PF00175 Oxidoreductase NAD-binding domain NRL09_17310 PF00970 Oxidoreductase FAD-binding domain NRL09_17310 PF00111 2Fe-2S iron-sulfur cluster binding domain NRL09_17330 PF00753 Metallo-beta-lactamase superfamily NRL09_17335 PF01609 Transposase DDE domain NRL09_17340 PF05598 Transposase domain (DUF772) NRL09_17340 PF01609 Transposase DDE domain NRL09_17380 PF01425 Amidase NRL09_17385 PF04371 Porphyromonas-type peptidyl-arginine deiminase NRL09_17390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_17390 PF03466 LysR substrate binding domain NRL09_17400 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NRL09_17405 PF00583 Acetyltransferase (GNAT) family NRL09_17410 PF01758 Sodium Bile acid symporter family NRL09_17420 PF03144 Elongation factor Tu domain 2 NRL09_17420 PF00009 Elongation factor Tu GTP binding domain NRL09_17420 PF16658 Class II release factor RF3, C-terminal domain NRL09_17425 PF00990 Diguanylate cyclase, GGDEF domain NRL09_17425 PF00072 Response regulator receiver domain NRL09_17430 PF00990 Diguanylate cyclase, GGDEF domain NRL09_17430 PF08448 PAS fold NRL09_17430 PF00563 EAL domain NRL09_17435 PF05762 VWA domain containing CoxE-like protein NRL09_17440 PF07728 AAA domain (dynein-related subfamily) NRL09_17440 PF17868 AAA lid domain NRL09_17440 PF12592 Protein of unknown function (DUF3763) NRL09_17450 PF13808 DDE_Tnp_1-associated NRL09_17450 PF01609 Transposase DDE domain NRL09_17455 PF00583 Acetyltransferase (GNAT) family NRL09_17465 PF00501 AMP-binding enzyme NRL09_17475 PF01177 Asp/Glu/Hydantoin racemase NRL09_17490 PF00392 Bacterial regulatory proteins, gntR family NRL09_17490 PF00155 Aminotransferase class I and II NRL09_17505 PF00209 Sodium:neurotransmitter symporter family NRL09_17510 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_17510 PF01610 Transposase NRL09_17510 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_17515 PF00209 Sodium:neurotransmitter symporter family NRL09_17535 PF07690 Major Facilitator Superfamily NRL09_17545 PF01037 Lrp/AsnC ligand binding domain NRL09_17560 PF01047 MarR family NRL09_17565 PF00107 Zinc-binding dehydrogenase NRL09_17565 PF16884 N-terminal domain of oxidoreductase NRL09_17570 PF00293 NUDIX domain NRL09_17585 PF01641 SelR domain NRL09_17590 PF00128 Alpha amylase, catalytic domain NRL09_17590 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NRL09_17595 PF00128 Alpha amylase, catalytic domain NRL09_17595 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NRL09_17595 PF02806 Alpha amylase, C-terminal all-beta domain NRL09_17600 PF02446 4-alpha-glucanotransferase NRL09_17605 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NRL09_17605 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NRL09_17610 PF01263 Aldose 1-epimerase NRL09_17615 PF02445 Quinolinate synthetase A protein NRL09_17620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL09_17620 PF00672 HAMP domain NRL09_17665 PF16331 TolA binding protein trimerisation NRL09_17665 PF13174 Tetratricopeptide repeat NRL09_17670 PF00691 OmpA family NRL09_17675 PF07676 WD40-like Beta Propeller Repeat NRL09_17675 PF04052 TolB amino-terminal domain NRL09_17685 PF02472 Biopolymer transport protein ExbD/TolR NRL09_17690 PF01618 MotA/TolQ/ExbB proton channel family NRL09_17695 PF03061 Thioesterase superfamily NRL09_17700 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) NRL09_17705 PF08173 Membrane bound YbgT-like protein NRL09_17710 PF02322 Cytochrome bd terminal oxidase subunit II NRL09_17715 PF01654 Cytochrome bd terminal oxidase subunit I NRL09_17725 PF17864 RuvB AAA lid domain NRL09_17725 PF05491 RuvB C-terminal winged helix domain NRL09_17725 PF05496 Holliday junction DNA helicase RuvB P-loop domain NRL09_17730 PF07499 RuvA, C-terminal domain NRL09_17730 PF01330 RuvA N terminal domain NRL09_17735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL09_17735 PF00672 HAMP domain NRL09_17735 PF12729 Four helix bundle sensory module for signal transduction NRL09_17740 PF03129 Anticodon binding domain NRL09_17740 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NRL09_17740 PF04073 Aminoacyl-tRNA editing domain NRL09_17745 PF00929 Exonuclease NRL09_17750 PF00106 short chain dehydrogenase NRL09_17765 PF00378 Enoyl-CoA hydratase/isomerase NRL09_17770 PF10952 Protein of unknown function (DUF2753) NRL09_17775 PF00132 Bacterial transferase hexapeptide (six repeats) NRL09_17785 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRL09_17795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL09_17795 PF08447 PAS fold NRL09_17800 PF00270 DEAD/DEAH box helicase NRL09_17800 PF00271 Helicase conserved C-terminal domain NRL09_17805 PF08534 Redoxin NRL09_17810 PF00403 Heavy-metal-associated domain NRL09_17815 PF18494 Pullulanase Ins domain NRL09_17815 PF03714 Bacterial pullanase-associated domain NRL09_17815 PF17967 Pullulanase N2 domain NRL09_17815 PF11852 Domain of unknown function (DUF3372) NRL09_17815 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NRL09_17830 PF02583 Metal-sensitive transcriptional repressor NRL09_17835 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) NRL09_17840 PF01270 Glycosyl hydrolases family 8 NRL09_17845 PF03170 Bacterial cellulose synthase subunit NRL09_17850 PF00535 Glycosyl transferase family 2 NRL09_17850 PF07238 PilZ domain NRL09_17855 PF03552 Cellulose synthase NRL09_17855 PF00535 Glycosyl transferase family 2 NRL09_17855 PF07238 PilZ domain NRL09_17860 PF06564 Cellulose biosynthesis protein BcsQ NRL09_17870 PF11658 Cellulose biosynthesis protein BcsG NRL09_17880 PF00155 Aminotransferase class I and II NRL09_17885 PF03466 LysR substrate binding domain NRL09_17885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_17895 PF04055 Radical SAM superfamily NRL09_17900 PF11230 Protein of unknown function (DUF3029) NRL09_17915 PF00970 Oxidoreductase FAD-binding domain NRL09_17915 PF00111 2Fe-2S iron-sulfur cluster binding domain NRL09_17915 PF00175 Oxidoreductase NAD-binding domain NRL09_17930 PF17200 Single Cache domain 2 NRL09_17930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL09_17930 PF00672 HAMP domain NRL09_17935 PF18416 N-acetylglucosamine binding protein domain 2 NRL09_17935 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading NRL09_17940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_17940 PF03466 LysR substrate binding domain NRL09_17945 PF12857 TOBE-like domain NRL09_17945 PF00005 ABC transporter NRL09_17950 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_17955 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_18000 PF18337 RapA N-terminal Tudor like domain NRL09_18000 PF00271 Helicase conserved C-terminal domain NRL09_18000 PF18339 RapA N-terminal Tudor like domain 1 NRL09_18000 PF00176 SNF2 family N-terminal domain NRL09_18000 PF12137 RNA polymerase recycling family C-terminal NRL09_18005 PF00849 RNA pseudouridylate synthase NRL09_18015 PF00990 Diguanylate cyclase, GGDEF domain NRL09_18015 PF00563 EAL domain NRL09_18015 PF03707 Bacterial signalling protein N terminal repeat NRL09_18025 PF00118 TCP-1/cpn60 chaperonin family NRL09_18030 PF00166 Chaperonin 10 Kd subunit NRL09_18035 PF01554 MatE NRL09_18040 PF04186 FxsA cytoplasmic membrane protein NRL09_18045 PF10415 Fumarase C C-terminus NRL09_18045 PF00206 Lyase NRL09_18050 PF03605 Anaerobic c4-dicarboxylate membrane transporter NRL09_18055 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_18055 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_18055 PF01610 Transposase NRL09_18060 PF04262 Glutamate-cysteine ligase NRL09_18065 PF00675 Insulinase (Peptidase family M16) NRL09_18065 PF05193 Peptidase M16 inactive domain NRL09_18070 PF09335 SNARE associated Golgi protein NRL09_18075 PF00698 Acyl transferase domain NRL09_18075 PF08240 Alcohol dehydrogenase GroES-like domain NRL09_18075 PF00550 Phosphopantetheine attachment site NRL09_18075 PF00109 Beta-ketoacyl synthase, N-terminal domain NRL09_18075 PF08990 Erythronolide synthase docking NRL09_18075 PF16197 Ketoacyl-synthetase C-terminal extension NRL09_18075 PF02801 Beta-ketoacyl synthase, C-terminal domain NRL09_18075 PF08659 KR domain NRL09_18075 PF14765 Polyketide synthase dehydratase NRL09_18085 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRL09_18105 PF00175 Oxidoreductase NAD-binding domain NRL09_18105 PF00970 Oxidoreductase FAD-binding domain NRL09_18110 PF01281 Ribosomal protein L9, N-terminal domain NRL09_18110 PF03948 Ribosomal protein L9, C-terminal domain NRL09_18115 PF01084 Ribosomal protein S18 NRL09_18120 PF01250 Ribosomal protein S6 NRL09_18125 PF01566 Natural resistance-associated macrophage protein NRL09_18130 PF02272 DHHA1 domain NRL09_18130 PF01411 tRNA synthetases class II (A) NRL09_18130 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NRL09_18135 PF13673 Acetyltransferase (GNAT) domain NRL09_18145 PF00588 SpoU rRNA Methylase family NRL09_18145 PF08032 RNA 2'-O ribose methyltransferase substrate binding NRL09_18150 PF17876 Cold shock domain NRL09_18150 PF08461 Ribonuclease R winged-helix domain NRL09_18150 PF08206 Ribonuclease B OB domain NRL09_18150 PF00773 RNB domain NRL09_18150 PF00575 S1 RNA binding domain NRL09_18155 PF00990 Diguanylate cyclase, GGDEF domain NRL09_18160 PF02664 S-Ribosylhomocysteinase (LuxS) NRL09_18170 PF00543 Nitrogen regulatory protein P-II NRL09_18175 PF00795 Carbon-nitrogen hydrolase NRL09_18175 PF02540 NAD synthase NRL09_18205 PF02401 LytB protein NRL09_18210 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRL09_18215 PF01252 Signal peptidase (SPase) II NRL09_18220 PF08264 Anticodon-binding domain of tRNA NRL09_18220 PF00133 tRNA synthetases class I (I, L, M and V) NRL09_18220 PF06827 Zinc finger found in FPG and IleRS NRL09_18225 PF01687 Riboflavin kinase NRL09_18225 PF06574 FAD synthetase NRL09_18230 PF03023 Lipid II flippase MurJ NRL09_18235 PF01649 Ribosomal protein S20 NRL09_18240 PF01022 Bacterial regulatory protein, arsR family NRL09_18245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_18245 PF03466 LysR substrate binding domain NRL09_18255 PF06965 Na+/H+ antiporter 1 NRL09_18260 PF00303 Thymidylate synthase NRL09_18265 PF01790 Prolipoprotein diacylglyceryl transferase NRL09_18270 PF01590 GAF domain NRL09_18270 PF05524 PEP-utilising enzyme, N-terminal NRL09_18270 PF00391 PEP-utilising enzyme, mobile domain NRL09_18270 PF02896 PEP-utilising enzyme, TIM barrel domain NRL09_18275 PF00293 NUDIX domain NRL09_18280 PF02976 DNA mismatch repair enzyme MutH NRL09_18290 PF01245 Ribosomal protein L19 NRL09_18295 PF01746 tRNA (Guanine-1)-methyltransferase NRL09_18300 PF05239 PRC-barrel domain NRL09_18300 PF01782 RimM N-terminal domain NRL09_18305 PF00886 Ribosomal protein S16 NRL09_18310 PF02978 Signal peptide binding domain NRL09_18310 PF00448 SRP54-type protein, GTPase domain NRL09_18310 PF02881 SRP54-type protein, helical bundle domain NRL09_18315 PF01578 Cytochrome C assembly protein NRL09_18320 PF03471 Transporter associated domain NRL09_18320 PF00571 CBS domain NRL09_18320 PF01595 Cyclin M transmembrane N-terminal domain NRL09_18325 PF02082 Transcriptional regulator NRL09_18330 PF00970 Oxidoreductase FAD-binding domain NRL09_18330 PF00042 Globin NRL09_18330 PF00175 Oxidoreductase NAD-binding domain NRL09_18335 PF08238 Sel1 repeat NRL09_18340 PF00056 lactate/malate dehydrogenase, NAD binding domain NRL09_18340 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NRL09_18345 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_18350 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_18355 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL09_18360 PF00005 ABC transporter NRL09_18365 PF02863 Arginine repressor, C-terminal domain NRL09_18365 PF01316 Arginine repressor, DNA binding domain NRL09_18370 PF04261 Dyp-type peroxidase family NRL09_18375 PF08402 TOBE domain NRL09_18375 PF00005 ABC transporter NRL09_18390 PF00543 Nitrogen regulatory protein P-II NRL09_18395 PF00472 RF-1 domain NRL09_18400 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NRL09_18400 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NRL09_18405 PF07670 Nucleoside recognition NRL09_18405 PF07662 Na+ dependent nucleoside transporter C-terminus NRL09_18405 PF01773 Na+ dependent nucleoside transporter N-terminus NRL09_18410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_18410 PF03466 LysR substrate binding domain NRL09_18415 PF00255 Glutathione peroxidase NRL09_18425 PF02595 Glycerate kinase family NRL09_18430 PF02447 GntP family permease NRL09_18435 PF05651 Putative sugar diacid recognition NRL09_18435 PF17853 GGDEF-like domain NRL09_18435 PF13556 PucR C-terminal helix-turn-helix domain NRL09_18440 PF06062 Uncharacterised protein family (UPF0231) NRL09_18460 PF02594 Uncharacterised ACR, YggU family COG1872 NRL09_18465 PF02325 YGGT family NRL09_18470 PF14748 Pyrroline-5-carboxylate reductase dimerisation NRL09_18470 PF03807 NADP oxidoreductase coenzyme F420-dependent NRL09_18475 PF01168 Alanine racemase, N-terminal domain NRL09_18480 PF00437 Type II/IV secretion system protein NRL09_18485 PF00437 Type II/IV secretion system protein NRL09_18490 PF03883 Peroxide stress protein YaaA NRL09_18495 PF00271 Helicase conserved C-terminal domain NRL09_18495 PF00270 DEAD/DEAH box helicase NRL09_18500 PF05175 Methyltransferase small domain NRL09_18505 PF05525 Branched-chain amino acid transport protein NRL09_18520 PF01475 Ferric uptake regulator family NRL09_18525 PF01207 Dihydrouridine synthase (Dus) NRL09_18535 PF13006 Insertion element 4 transposase N-terminal NRL09_18535 PF01609 Transposase DDE domain NRL09_18545 PF00216 Bacterial DNA-binding protein NRL09_18550 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ NRL09_18555 PF07238 PilZ domain NRL09_18560 PF18073 Rubredoxin metal binding domain NRL09_18575 PF18429 Domain of unknown function (DUF5609) NRL09_18585 PF00990 Diguanylate cyclase, GGDEF domain NRL09_18585 PF05231 MASE1 NRL09_18585 PF13426 PAS domain NRL09_18585 PF08447 PAS fold NRL09_18585 PF08448 PAS fold NRL09_18585 PF00563 EAL domain NRL09_18590 PF01048 Phosphorylase superfamily NRL09_18595 PF01676 Metalloenzyme superfamily NRL09_18600 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain NRL09_18600 PF00591 Glycosyl transferase family, a/b domain NRL09_18600 PF02885 Glycosyl transferase family, helical bundle domain NRL09_18605 PF01791 DeoC/LacD family aldolase NRL09_18615 PF01773 Na+ dependent nucleoside transporter N-terminus NRL09_18615 PF07662 Na+ dependent nucleoside transporter C-terminus NRL09_18615 PF07670 Nucleoside recognition NRL09_18620 PF01026 TatD related DNase NRL09_18625 PF07963 Prokaryotic N-terminal methylation motif NRL09_18640 PF05958 tRNA (Uracil-5-)-methyltransferase NRL09_18640 PF01938 TRAM domain NRL09_18645 PF00909 Ammonium Transporter Family NRL09_18665 PF03739 Lipopolysaccharide export system permease LptF/LptG NRL09_18670 PF03739 Lipopolysaccharide export system permease LptF/LptG NRL09_18675 PF02789 Cytosol aminopeptidase family, N-terminal domain NRL09_18675 PF00883 Cytosol aminopeptidase family, catalytic domain NRL09_18685 PF10458 Valyl tRNA synthetase tRNA binding arm NRL09_18685 PF00133 tRNA synthetases class I (I, L, M and V) NRL09_18685 PF08264 Anticodon-binding domain of tRNA NRL09_18690 PF01595 Cyclin M transmembrane N-terminal domain NRL09_18690 PF03471 Transporter associated domain NRL09_18690 PF00571 CBS domain NRL09_18695 PF09335 SNARE associated Golgi protein NRL09_18700 PF00768 D-alanyl-D-alanine carboxypeptidase NRL09_18705 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_18705 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_18705 PF01610 Transposase NRL09_18740 PF02599 Global regulator protein family NRL09_18745 PF00696 Amino acid kinase family NRL09_18745 PF01842 ACT domain NRL09_18745 PF13840 ACT domain NRL09_18750 PF02272 DHHA1 domain NRL09_18750 PF01411 tRNA synthetases class II (A) NRL09_18750 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NRL09_18755 PF02631 RecX family NRL09_18760 PF00154 recA bacterial DNA recombination protein NRL09_18765 PF02464 Competence-damaged protein NRL09_18775 PF00488 MutS domain V NRL09_18775 PF05190 MutS family domain IV NRL09_18775 PF05192 MutS domain III NRL09_18775 PF05188 MutS domain II NRL09_18775 PF01624 MutS domain I NRL09_18780 PF02028 BCCT, betaine/carnitine/choline family transporter NRL09_18825 PF02660 Glycerol-3-phosphate acyltransferase NRL09_18830 PF02152 Dihydroneopterin aldolase NRL09_18835 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NRL09_18845 PF13808 DDE_Tnp_1-associated NRL09_18845 PF01609 Transposase DDE domain NRL09_18850 PF07690 Major Facilitator Superfamily NRL09_18855 PF02492 CobW/HypB/UreG, nucleotide-binding domain NRL09_18855 PF07683 Cobalamin synthesis protein cobW C-terminal domain NRL09_18860 PF04030 D-arabinono-1,4-lactone oxidase NRL09_18860 PF01565 FAD binding domain NRL09_18865 PF01810 LysE type translocator NRL09_18870 PF03466 LysR substrate binding domain NRL09_18870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_18875 PF00563 EAL domain NRL09_18875 PF12792 CSS motif domain associated with EAL NRL09_18880 PF11791 Aconitate B N-terminal domain NRL09_18880 PF00330 Aconitase family (aconitate hydratase) NRL09_18880 PF06434 Aconitate hydratase 2 N-terminus NRL09_18885 PF01734 Patatin-like phospholipase NRL09_18890 PF12729 Four helix bundle sensory module for signal transduction NRL09_18890 PF00672 HAMP domain NRL09_18890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL09_18900 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL09_18900 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NRL09_18905 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NRL09_18905 PF00364 Biotin-requiring enzyme NRL09_18905 PF02817 e3 binding domain NRL09_18910 PF17831 Pyruvate dehydrogenase E1 component middle domain NRL09_18910 PF00456 Transketolase, thiamine diphosphate binding domain NRL09_18915 PF07729 FCD domain NRL09_18915 PF00392 Bacterial regulatory proteins, gntR family NRL09_18920 PF01510 N-acetylmuramoyl-L-alanine amidase NRL09_18930 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NRL09_18930 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NRL09_18935 PF07963 Prokaryotic N-terminal methylation motif NRL09_18940 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NRL09_18940 PF00437 Type II/IV secretion system protein NRL09_18945 PF00482 Type II secretion system (T2SS), protein F NRL09_18950 PF06750 Bacterial Peptidase A24 N-terminal domain NRL09_18950 PF01478 Type IV leader peptidase family NRL09_18955 PF01121 Dephospho-CoA kinase NRL09_18960 PF07072 Cell division protein NRL09_18965 PF03884 DNA gyrase inhibitor YacG NRL09_18970 PF00293 NUDIX domain NRL09_18985 PF01043 SecA preprotein cross-linking domain NRL09_18985 PF07516 SecA Wing and Scaffold domain NRL09_18985 PF02810 SEC-C motif NRL09_18985 PF07517 SecA DEAD-like domain NRL09_18995 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase NRL09_19000 PF12327 FtsZ family, C-terminal domain NRL09_19000 PF00091 Tubulin/FtsZ family, GTPase domain NRL09_19005 PF02491 SHS2 domain inserted in FTSA NRL09_19010 PF03799 Cell division protein FtsQ NRL09_19010 PF08478 POTRA domain, FtsQ-type NRL09_19015 PF08245 Mur ligase middle domain NRL09_19015 PF02875 Mur ligase family, glutamate ligase domain NRL09_19015 PF01225 Mur ligase family, catalytic domain NRL09_19020 PF03033 Glycosyltransferase family 28 N-terminal domain NRL09_19020 PF04101 Glycosyltransferase family 28 C-terminal domain NRL09_19025 PF01098 Cell cycle protein NRL09_19030 PF08245 Mur ligase middle domain NRL09_19030 PF02875 Mur ligase family, glutamate ligase domain NRL09_19035 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 NRL09_19035 PF00953 Glycosyl transferase family 4 NRL09_19040 PF01225 Mur ligase family, catalytic domain NRL09_19040 PF02875 Mur ligase family, glutamate ligase domain NRL09_19040 PF08245 Mur ligase middle domain NRL09_19045 PF01225 Mur ligase family, catalytic domain NRL09_19045 PF02875 Mur ligase family, glutamate ligase domain NRL09_19045 PF08245 Mur ligase middle domain NRL09_19050 PF03717 Penicillin-binding Protein dimerisation domain NRL09_19050 PF00905 Penicillin binding protein transpeptidase domain NRL09_19055 PF04999 Cell division protein FtsL NRL09_19060 PF01795 MraW methylase family NRL09_19065 PF02381 MraZ protein, putative antitoxin-like NRL09_19080 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NRL09_19085 PF04348 LppC putative lipoprotein NRL09_19090 PF02021 Uncharacterised protein family UPF0102 NRL09_19095 PF13580 SIS domain NRL09_19100 PF04972 BON domain NRL09_19105 PF04386 Stringent starvation protein B NRL09_19110 PF00043 Glutathione S-transferase, C-terminal domain NRL09_19110 PF02798 Glutathione S-transferase, N-terminal domain NRL09_19115 PF02167 Cytochrome C1 family NRL09_19120 PF00032 Cytochrome b(C-terminal)/b6/petD NRL09_19120 PF00033 Cytochrome b/b6/petB NRL09_19125 PF00355 Rieske [2Fe-2S] domain NRL09_19125 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal NRL09_19130 PF00380 Ribosomal protein S9/S16 NRL09_19135 PF00572 Ribosomal protein L13 NRL09_19140 PF03969 AFG1-like ATPase NRL09_19150 PF00595 PDZ domain NRL09_19150 PF13180 PDZ domain NRL09_19155 PF13180 PDZ domain NRL09_19185 PF01979 Amidohydrolase family NRL09_19190 PF03841 L-seryl-tRNA selenium transferase NRL09_19195 PF07071 KDGP aldolase NRL09_19200 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRL09_19200 PF02378 Phosphotransferase system, EIIC NRL09_19200 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NRL09_19205 PF00381 PTS HPr component phosphorylation site NRL09_19210 PF03668 P-loop ATPase protein family NRL09_19215 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRL09_19220 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NRL09_19225 PF00309 Sigma-54 factor, Activator interacting domain (AID) NRL09_19225 PF04963 Sigma-54 factor, core binding domain NRL09_19225 PF04552 Sigma-54, DNA binding domain NRL09_19230 PF00005 ABC transporter NRL09_19230 PF12399 Branched-chain amino acid ATP-binding cassette transporter NRL09_19235 PF03968 OstA-like protein NRL09_19250 PF00571 CBS domain NRL09_19250 PF01380 SIS domain NRL09_19255 PF00005 ABC transporter NRL09_19260 PF02405 Permease MlaE NRL09_19265 PF02470 MlaD protein NRL09_19270 PF05494 MlaC protein NRL09_19280 PF01722 BolA-like protein NRL09_19285 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NRL09_19290 PF03692 Putative zinc- or iron-chelating domain NRL09_19295 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded NRL09_19310 PF07715 TonB-dependent Receptor Plug Domain NRL09_19310 PF00593 TonB dependent receptor NRL09_19325 PF01638 HxlR-like helix-turn-helix NRL09_19330 PF08803 Putative mono-oxygenase ydhR NRL09_19345 PF06055 Exopolysaccharide synthesis, ExoD NRL09_19350 PF00990 Diguanylate cyclase, GGDEF domain NRL09_19355 PF13036 Peptidoglycan-synthase activator LpoB NRL09_19365 PF01609 Transposase DDE domain NRL09_19385 PF01609 Transposase DDE domain NRL09_19385 PF05598 Transposase domain (DUF772) NRL09_19395 PF00589 Phage integrase family NRL09_19395 PF14659 Phage integrase, N-terminal SAM-like domain NRL09_19395 PF13356 Arm DNA-binding domain NRL09_19405 PF00999 Sodium/hydrogen exchanger family NRL09_19410 PF02607 B12 binding domain NRL09_19410 PF02310 B12 binding domain NRL09_19410 PF02965 Vitamin B12 dependent methionine synthase, activation domain NRL09_19410 PF00809 Pterin binding enzyme NRL09_19410 PF02574 Homocysteine S-methyltransferase NRL09_19420 PF08443 RimK-like ATP-grasp domain NRL09_19420 PF18030 RimK PreATP-grasp domain NRL09_19425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_19430 PF00486 Transcriptional regulatory protein, C terminal NRL09_19430 PF00072 Response regulator receiver domain NRL09_19445 PF13667 ThiC-associated domain NRL09_19445 PF01964 Radical SAM ThiC family NRL09_19450 PF02581 Thiamine monophosphate synthase NRL09_19455 PF00899 ThiF family NRL09_19465 PF05690 Thiazole biosynthesis protein ThiG NRL09_19470 PF04055 Radical SAM superfamily NRL09_19470 PF06968 Biotin and Thiamin Synthesis associated domain NRL09_19480 PF01609 Transposase DDE domain NRL09_19480 PF13808 DDE_Tnp_1-associated NRL09_19485 PF01609 Transposase DDE domain NRL09_19495 PF04471 Restriction endonuclease NRL09_19495 PF14338 Mrr N-terminal domain NRL09_19505 PF12161 HsdM N-terminal domain NRL09_19505 PF02384 N-6 DNA Methylase NRL09_19510 PF01420 Type I restriction modification DNA specificity domain NRL09_19530 PF04320 Protein with unknown function (DUF469) NRL09_19540 PF01695 IstB-like ATP binding protein NRL09_19545 PF00665 Integrase core domain NRL09_19560 PF04228 Putative neutral zinc metallopeptidase NRL09_19570 PF07690 Major Facilitator Superfamily NRL09_19575 PF01914 MarC family integral membrane protein NRL09_19585 PF01523 Putative modulator of DNA gyrase NRL09_19590 PF00795 Carbon-nitrogen hydrolase NRL09_19595 PF13502 AsmA-like C-terminal region NRL09_19595 PF13116 Protein of unknown function NRL09_19600 PF10150 Ribonuclease E/G family NRL09_19600 PF00575 S1 RNA binding domain NRL09_19605 PF02545 Maf-like protein NRL09_19610 PF04093 rod shape-determining protein MreD NRL09_19615 PF04085 rod shape-determining protein MreC NRL09_19660 PF12792 CSS motif domain associated with EAL NRL09_19660 PF00563 EAL domain NRL09_19665 PF01699 Sodium/calcium exchanger protein NRL09_19670 PF00221 Aromatic amino acid lyase NRL09_19675 PF01175 Urocanase Rossmann-like domain NRL09_19675 PF17392 Urocanase C-terminal domain NRL09_19675 PF17391 Urocanase N-terminal domain NRL09_19680 PF00491 Arginase family NRL09_19685 PF01979 Amidohydrolase family NRL09_19695 PF00392 Bacterial regulatory proteins, gntR family NRL09_19695 PF07702 UTRA domain NRL09_19700 PF00484 Carbonic anhydrase NRL09_19705 PF04545 Sigma-70, region 4 NRL09_19705 PF04542 Sigma-70 region 2 NRL09_19705 PF00140 Sigma-70 factor, region 1.2 NRL09_19710 PF01610 Transposase NRL09_19710 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_19710 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_19715 PF18075 FtsX extracellular domain NRL09_19720 PF00005 ABC transporter NRL09_19725 PF02881 SRP54-type protein, helical bundle domain NRL09_19725 PF00448 SRP54-type protein, GTPase domain NRL09_19740 PF07226 Protein of unknown function (DUF1422) NRL09_19745 PF00440 Bacterial regulatory proteins, tetR family NRL09_19755 PF13091 PLD-like domain NRL09_19765 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL09_19765 PF01464 Transglycosylase SLT domain NRL09_19775 PF02416 mttA/Hcf106 family NRL09_19780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_19780 PF03466 LysR substrate binding domain NRL09_19785 PF01914 MarC family integral membrane protein NRL09_19790 PF10678 Protein of unknown function (DUF2492) NRL09_19795 PF00375 Sodium:dicarboxylate symporter family NRL09_19805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_19805 PF03466 LysR substrate binding domain NRL09_19810 PF13533 Biotin-lipoyl like NRL09_19815 PF07690 Major Facilitator Superfamily NRL09_19820 PF07947 YhhN family NRL09_19835 PF16868 NMT1-like family NRL09_19840 PF00326 Prolyl oligopeptidase family NRL09_19840 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NRL09_19855 PF00106 short chain dehydrogenase NRL09_19860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_19860 PF03466 LysR substrate binding domain NRL09_19865 PF02525 Flavodoxin-like fold NRL09_19870 PF02254 TrkA-N domain NRL09_19870 PF00999 Sodium/hydrogen exchanger family NRL09_19885 PF01695 IstB-like ATP binding protein NRL09_19890 PF00665 Integrase core domain NRL09_19925 PF01196 Ribosomal protein L17 NRL09_19930 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NRL09_19930 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NRL09_19930 PF01000 RNA polymerase Rpb3/RpoA insert domain NRL09_19935 PF00163 Ribosomal protein S4/S9 N-terminal domain NRL09_19935 PF01479 S4 domain NRL09_19940 PF00411 Ribosomal protein S11 NRL09_19945 PF00416 Ribosomal protein S13/S18 NRL09_19950 PF00444 Ribosomal protein L36 NRL09_19955 PF00344 SecY translocase NRL09_19960 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NRL09_19965 PF00327 Ribosomal protein L30p/L7e NRL09_19970 PF00333 Ribosomal protein S5, N-terminal domain NRL09_19970 PF03719 Ribosomal protein S5, C-terminal domain NRL09_19975 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NRL09_19980 PF00347 Ribosomal protein L6 NRL09_19985 PF00410 Ribosomal protein S8 NRL09_19990 PF00253 Ribosomal protein S14p/S29e NRL09_19995 PF00281 Ribosomal protein L5 NRL09_19995 PF00673 ribosomal L5P family C-terminus NRL09_20000 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NRL09_20000 PF00467 KOW motif NRL09_20005 PF00238 Ribosomal protein L14p/L23e NRL09_20010 PF00366 Ribosomal protein S17 NRL09_20015 PF00831 Ribosomal L29 protein NRL09_20020 PF00252 Ribosomal protein L16p/L10e NRL09_20025 PF07650 KH domain NRL09_20025 PF00189 Ribosomal protein S3, C-terminal domain NRL09_20030 PF00237 Ribosomal protein L22p/L17e NRL09_20035 PF00203 Ribosomal protein S19 NRL09_20040 PF00181 Ribosomal Proteins L2, RNA binding domain NRL09_20040 PF03947 Ribosomal Proteins L2, C-terminal domain NRL09_20045 PF00276 Ribosomal protein L23 NRL09_20050 PF00573 Ribosomal protein L4/L1 family NRL09_20055 PF00297 Ribosomal protein L3 NRL09_20060 PF00338 Ribosomal protein S10p/S20e NRL09_20070 PF00512 His Kinase A (phospho-acceptor) domain NRL09_20070 PF00672 HAMP domain NRL09_20070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_20075 PF00072 Response regulator receiver domain NRL09_20075 PF00486 Transcriptional regulatory protein, C terminal NRL09_20080 PF01272 Transcription elongation factor, GreA/GreB, C-term NRL09_20080 PF03449 Transcription elongation factor, N-terminal NRL09_20085 PF17674 HHH domain NRL09_20085 PF00575 S1 RNA binding domain NRL09_20085 PF09371 Tex-like protein N-terminal domain NRL09_20085 PF16921 Tex protein YqgF-like domain NRL09_20100 PF00561 alpha/beta hydrolase fold NRL09_20105 PF00156 Phosphoribosyl transferase domain NRL09_20110 PF01521 Iron-sulphur cluster biosynthesis NRL09_20110 PF01106 NifU-like domain NRL09_20115 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NRL09_20115 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NRL09_20120 PF02556 Preprotein translocase subunit SecB NRL09_20125 PF00581 Rhodanese-like domain NRL09_20130 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NRL09_20130 PF01676 Metalloenzyme superfamily NRL09_20135 PF01551 Peptidase family M23 NRL09_20145 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NRL09_20145 PF00356 Bacterial regulatory proteins, lacI family NRL09_20160 PF01081 KDPG and KHG aldolase NRL09_20165 PF00920 Dehydratase family NRL09_20170 PF01202 Shikimate kinase NRL09_20175 PF02447 GntP family permease NRL09_20180 PF13091 PLD-like domain NRL09_20185 PF00271 Helicase conserved C-terminal domain NRL09_20185 PF17191 RecG wedge domain NRL09_20185 PF00270 DEAD/DEAH box helicase NRL09_20195 PF00583 Acetyltransferase (GNAT) family NRL09_20195 PF09500 Putative thioesterase (yiiD_Cterm) NRL09_20205 PF02580 D-Tyr-tRNA(Tyr) deacylase NRL09_20210 PF03631 Virulence factor BrkB NRL09_20215 PF03144 Elongation factor Tu domain 2 NRL09_20215 PF00009 Elongation factor Tu GTP binding domain NRL09_20215 PF00679 Elongation factor G C-terminus NRL09_20220 PF00120 Glutamine synthetase, catalytic domain NRL09_20220 PF03951 Glutamine synthetase, beta-Grasp domain NRL09_20230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_20230 PF00512 His Kinase A (phospho-acceptor) domain NRL09_20230 PF00989 PAS fold NRL09_20235 PF02954 Bacterial regulatory protein, Fis family NRL09_20235 PF00072 Response regulator receiver domain NRL09_20235 PF00158 Sigma-54 interaction domain NRL09_20240 PF00962 Adenosine/AMP deaminase NRL09_20245 PF06969 HemN C-terminal domain NRL09_20245 PF04055 Radical SAM superfamily NRL09_20250 PF10675 Protein of unknown function (DUF2489) NRL09_20255 PF04220 Der GTPase activator (YihI) NRL09_20260 PF13808 DDE_Tnp_1-associated NRL09_20260 PF01609 Transposase DDE domain NRL09_20265 PF00034 Cytochrome c NRL09_20270 PF01926 50S ribosome-binding GTPase NRL09_20275 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NRL09_20275 PF01488 Shikimate / quinate 5-dehydrogenase NRL09_20275 PF08501 Shikimate dehydrogenase substrate binding domain NRL09_20280 PF01218 Coproporphyrinogen III oxidase NRL09_20285 PF01300 Telomere recombination NRL09_20290 PF01396 Topoisomerase DNA binding C4 zinc finger NRL09_20295 PF04361 Protein of unknown function (DUF494) NRL09_20300 PF02481 DNA recombination-mediator protein A NRL09_20300 PF17782 DprA winged helix domain NRL09_20310 PF01327 Polypeptide deformylase NRL09_20315 PF02911 Formyl transferase, C-terminal domain NRL09_20315 PF00551 Formyl transferase NRL09_20320 PF01189 16S rRNA methyltransferase RsmB/F NRL09_20320 PF01029 NusB family NRL09_20325 PF02080 TrkA-C domain NRL09_20325 PF02254 TrkA-N domain NRL09_20330 PF02386 Cation transport protein NRL09_20335 PF02646 RmuC family NRL09_20350 PF02082 Transcriptional regulator NRL09_20355 PF00294 pfkB family carbohydrate kinase NRL09_20360 PF03466 LysR substrate binding domain NRL09_20360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_20365 PF02540 NAD synthase NRL09_20365 PF00117 Glutamine amidotransferase class-I NRL09_20365 PF00958 GMP synthase C terminal domain NRL09_20370 PF00171 Aldehyde dehydrogenase family NRL09_20375 PF00202 Aminotransferase class-III NRL09_20380 PF01381 Helix-turn-helix NRL09_20380 PF07883 Cupin domain NRL09_20385 PF00171 Aldehyde dehydrogenase family NRL09_20395 PF00892 EamA-like transporter family NRL09_20400 PF12833 Helix-turn-helix domain NRL09_20405 PF01810 LysE type translocator NRL09_20410 PF06206 CpeT/CpcT family (DUF1001) NRL09_20430 PF14001 YdfZ protein NRL09_20445 PF03466 LysR substrate binding domain NRL09_20445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_20480 PF01609 Transposase DDE domain NRL09_20480 PF13808 DDE_Tnp_1-associated NRL09_20490 PF00580 UvrD/REP helicase N-terminal domain NRL09_20490 PF13361 UvrD-like helicase C-terminal domain NRL09_20495 PF02608 ABC transporter substrate-binding protein PnrA-like NRL09_20500 PF00005 ABC transporter NRL09_20505 PF02653 Branched-chain amino acid transport system / permease component NRL09_20510 PF02653 Branched-chain amino acid transport system / permease component NRL09_20520 PF05598 Transposase domain (DUF772) NRL09_20520 PF01609 Transposase DDE domain NRL09_20525 PF03466 LysR substrate binding domain NRL09_20525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL09_20530 PF08240 Alcohol dehydrogenase GroES-like domain NRL09_20530 PF00107 Zinc-binding dehydrogenase NRL09_20535 PF00756 Putative esterase NRL09_20550 PF12867 DinB superfamily NRL09_20550 PF03781 Sulfatase-modifying factor enzyme 1 NRL09_20555 PF13593 SBF-like CPA transporter family (DUF4137) NRL09_20560 PF13520 Amino acid permease NRL09_20565 PF01588 Putative tRNA binding domain NRL09_20570 PF13520 Amino acid permease NRL09_20575 PF04074 YhcH/YjgK/YiaL NRL09_20580 PF16353 Domain of unknown function(DUF4981) NRL09_20580 PF00703 Glycosyl hydrolases family 2 NRL09_20580 PF02836 Glycosyl hydrolases family 2, TIM barrel domain NRL09_20580 PF02837 Glycosyl hydrolases family 2, sugar binding domain NRL09_20580 PF02929 Beta galactosidase small chain NRL09_20585 PF00356 Bacterial regulatory proteins, lacI family NRL09_20620 PF12724 Flavodoxin domain NRL09_20625 PF02386 Cation transport protein NRL09_20630 PF09186 Domain of unknown function (DUF1949) NRL09_20630 PF01205 Uncharacterized protein family UPF0029 NRL09_20635 PF00557 Metallopeptidase family M24 NRL09_20640 PF13193 AMP-binding enzyme C-terminal domain NRL09_20640 PF00501 AMP-binding enzyme NRL09_20645 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NRL09_20645 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NRL09_20645 PF00378 Enoyl-CoA hydratase/isomerase NRL09_20650 PF00108 Thiolase, N-terminal domain NRL09_20650 PF02803 Thiolase, C-terminal domain NRL09_20655 PF00072 Response regulator receiver domain NRL09_20655 PF00486 Transcriptional regulatory protein, C terminal NRL09_20660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_20660 PF00512 His Kinase A (phospho-acceptor) domain NRL09_20660 PF00672 HAMP domain NRL09_20665 PF01547 Bacterial extracellular solute-binding protein NRL09_20680 PF01206 Sulfurtransferase TusA NRL09_20685 PF01042 Endoribonuclease L-PSP NRL09_20705 PF00691 OmpA family NRL09_20705 PF13488 Glycine zipper NRL09_20715 PF00857 Isochorismatase family NRL09_20720 PF03352 Methyladenine glycosylase NRL09_20725 PF02091 Glycyl-tRNA synthetase alpha subunit NRL09_20730 PF05746 DALR anticodon binding domain NRL09_20730 PF02092 Glycyl-tRNA synthetase beta subunit NRL09_20740 PF01609 Transposase DDE domain NRL09_20740 PF05598 Transposase domain (DUF772) NRL09_20775 PF03222 Tryptophan/tyrosine permease family NRL09_20780 PF03222 Tryptophan/tyrosine permease family NRL09_20785 PF01212 Beta-eliminating lyase NRL09_20790 PF13808 DDE_Tnp_1-associated NRL09_20790 PF01609 Transposase DDE domain NRL09_20795 PF01609 Transposase DDE domain NRL09_20800 PF12801 4Fe-4S binding domain NRL09_20810 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL09_20810 PF18113 Rubredoxin binding C-terminal domain NRL09_20815 PF00301 Rubredoxin NRL09_20815 PF00258 Flavodoxin NRL09_20815 PF00753 Metallo-beta-lactamase superfamily NRL09_20820 PF01590 GAF domain NRL09_20820 PF00158 Sigma-54 interaction domain NRL09_20825 PF00356 Bacterial regulatory proteins, lacI family NRL09_20830 PF13458 Periplasmic binding protein NRL09_20835 PF02653 Branched-chain amino acid transport system / permease component NRL09_20840 PF11862 Domain of unknown function (DUF3382) NRL09_20840 PF02653 Branched-chain amino acid transport system / permease component NRL09_20845 PF12399 Branched-chain amino acid ATP-binding cassette transporter NRL09_20845 PF00005 ABC transporter NRL09_20850 PF00005 ABC transporter NRL09_20860 PF01810 LysE type translocator NRL09_20865 PF00581 Rhodanese-like domain NRL09_20870 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease NRL09_20870 PF01694 Rhomboid family NRL09_20875 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_20875 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_20875 PF01610 Transposase NRL09_20880 PF12262 Bacterial virulence factor lipase N-terminal NRL09_20885 PF04380 Membrane fusogenic activity NRL09_20890 PF00175 Oxidoreductase NAD-binding domain NRL09_20895 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase NRL09_20905 PF07497 Rho termination factor, RNA-binding domain NRL09_20905 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NRL09_20905 PF07498 Rho termination factor, N-terminal domain NRL09_20910 PF00085 Thioredoxin NRL09_20915 PF00270 DEAD/DEAH box helicase NRL09_20915 PF00271 Helicase conserved C-terminal domain NRL09_20920 PF02541 Ppx/GppA phosphatase family NRL09_20930 PF04445 Putative SAM-dependent methyltransferase NRL09_20935 PF00990 Diguanylate cyclase, GGDEF domain NRL09_20935 PF03707 Bacterial signalling protein N terminal repeat NRL09_20935 PF00563 EAL domain NRL09_20945 PF01609 Transposase DDE domain NRL09_20955 PF01432 Peptidase family M3 NRL09_20960 PF00490 Delta-aminolevulinic acid dehydratase NRL09_20965 PF01026 TatD related DNase NRL09_20970 PF00902 Sec-independent protein translocase protein (TatC) NRL09_20975 PF02416 mttA/Hcf106 family NRL09_20980 PF02416 mttA/Hcf106 family NRL09_20985 PF03109 ABC1 family NRL09_20990 PF02036 SCP-2 sterol transfer family NRL09_20995 PF01209 ubiE/COQ5 methyltransferase family NRL09_21000 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NRL09_21005 PF07969 Amidohydrolase family NRL09_21035 PF00132 Bacterial transferase hexapeptide (six repeats) NRL09_21040 PF01367 5'-3' exonuclease, C-terminal SAM fold NRL09_21040 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NRL09_21040 PF00476 DNA polymerase family A NRL09_21040 PF01612 3'-5' exonuclease NRL09_21050 PF06005 Cell division protein ZapB NRL09_21060 PF00132 Bacterial transferase hexapeptide (six repeats) NRL09_21060 PF06426 Serine acetyltransferase, N-terminal NRL09_21065 PF01545 Cation efflux family NRL09_21065 PF16916 Dimerisation domain of Zinc Transporter NRL09_21070 PF00486 Transcriptional regulatory protein, C terminal NRL09_21070 PF00072 Response regulator receiver domain NRL09_21075 PF16527 Two-component sensor protein CpxA, periplasmic domain NRL09_21075 PF00672 HAMP domain NRL09_21075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_21075 PF00512 His Kinase A (phospho-acceptor) domain NRL09_21080 PF00588 SpoU rRNA Methylase family NRL09_21085 PF01554 MatE NRL09_21090 PF02630 SCO1/SenC NRL09_21100 PF01726 LexA DNA binding domain NRL09_21100 PF00717 Peptidase S24-like NRL09_21105 PF01553 Acyltransferase NRL09_21110 PF01040 UbiA prenyltransferase family NRL09_21115 PF04345 Chorismate lyase NRL09_21120 PF03748 Flagellar basal body-associated protein FliL NRL09_21140 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NRL09_21140 PF00356 Bacterial regulatory proteins, lacI family NRL09_21145 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRL09_21175 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) NRL09_21195 PF13439 Glycosyltransferase Family 4 NRL09_21200 PF01370 NAD dependent epimerase/dehydratase family NRL09_21205 PF08360 QacR-like protein, C-terminal region NRL09_21205 PF00440 Bacterial regulatory proteins, tetR family NRL09_21210 PF00155 Aminotransferase class I and II NRL09_21215 PF01610 Transposase NRL09_21215 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_21215 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_21220 PF08240 Alcohol dehydrogenase GroES-like domain NRL09_21220 PF00107 Zinc-binding dehydrogenase NRL09_21225 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NRL09_21230 PF03707 Bacterial signalling protein N terminal repeat NRL09_21230 PF00990 Diguanylate cyclase, GGDEF domain NRL09_21230 PF00563 EAL domain NRL09_21235 PF00580 UvrD/REP helicase N-terminal domain NRL09_21235 PF13361 UvrD-like helicase C-terminal domain NRL09_21240 PF00266 Aminotransferase class-V NRL09_21245 PF02657 Fe-S metabolism associated domain NRL09_21250 PF00899 ThiF family NRL09_21285 PF03544 Gram-negative bacterial TonB protein C-terminal NRL09_21290 PF02472 Biopolymer transport protein ExbD/TolR NRL09_21295 PF01618 MotA/TolQ/ExbB proton channel family NRL09_21300 PF01618 MotA/TolQ/ExbB proton channel family NRL09_21310 PF00196 Bacterial regulatory proteins, luxR family NRL09_21310 PF03472 Autoinducer binding domain NRL09_21315 PF01380 SIS domain NRL09_21320 PF00455 DeoR C terminal sensor domain NRL09_21320 PF08220 DeoR-like helix-turn-helix domain NRL09_21325 PF00072 Response regulator receiver domain NRL09_21325 PF00486 Transcriptional regulatory protein, C terminal NRL09_21330 PF00512 His Kinase A (phospho-acceptor) domain NRL09_21330 PF00672 HAMP domain NRL09_21330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL09_21335 PF00905 Penicillin binding protein transpeptidase domain NRL09_21345 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_21345 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_21345 PF01610 Transposase NRL09_21350 PF06123 Inner membrane protein CreD NRL09_21355 PF00132 Bacterial transferase hexapeptide (six repeats) NRL09_21355 PF12804 MobA-like NTP transferase domain NRL09_21355 PF14602 Hexapeptide repeat of succinyl-transferase NRL09_21360 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain NRL09_21360 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NRL09_21365 PF02874 ATP synthase alpha/beta family, beta-barrel domain NRL09_21365 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NRL09_21370 PF00231 ATP synthase NRL09_21375 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NRL09_21375 PF00306 ATP synthase alpha/beta chain, C terminal domain NRL09_21375 PF02874 ATP synthase alpha/beta family, beta-barrel domain NRL09_21380 PF00213 ATP synthase delta (OSCP) subunit NRL09_21385 PF00430 ATP synthase B/B' CF(0) NRL09_21390 PF00137 ATP synthase subunit C NRL09_21395 PF00119 ATP synthase A chain NRL09_21405 PF02195 ParB-like nuclease domain NRL09_21405 PF17762 HTH domain found in ParB protein NRL09_21410 PF13614 AAA domain NRL09_21415 PF02527 rRNA small subunit methyltransferase G NRL09_21420 PF01134 Glucose inhibited division protein A NRL09_21420 PF13932 GidA associated domain NRL09_21425 PF00258 Flavodoxin NRL09_21430 PF07715 TonB-dependent Receptor Plug Domain NRL09_21430 PF00593 TonB dependent receptor NRL09_21435 PF00005 ABC transporter NRL09_21440 PF00005 ABC transporter NRL09_21445 PF01497 Periplasmic binding protein NRL09_21450 PF01032 FecCD transport family NRL09_21455 PF10396 GTP-binding protein TrmE N-terminus NRL09_21455 PF01926 50S ribosome-binding GTPase NRL09_21455 PF12631 MnmE helical domain NRL09_21460 PF14849 YidC periplasmic domain NRL09_21460 PF02096 60Kd inner membrane protein NRL09_21465 PF01809 Putative membrane protein insertion efficiency factor NRL09_21470 PF00825 Ribonuclease P NRL09_21475 PF00468 Ribosomal protein L34 NRL09_21480 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRL09_21480 PF01610 Transposase NRL09_21480 PF13542 Helix-turn-helix domain of transposase family ISL3 NRL09_21485 PF00005 ABC transporter NRL09_21490 PF00528 Binding-protein-dependent transport system inner membrane component NRL09_21495 PF00497 Bacterial extracellular solute-binding proteins, family 3