locus-tag class description NJR02_00005 PF00308 Bacterial dnaA protein NJR02_00005 PF08299 Bacterial dnaA protein helix-turn-helix NJR02_00005 PF11638 DnaA N-terminal domain NJR02_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain NJR02_00010 PF02767 DNA polymerase III beta subunit, central domain NJR02_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain NJR02_00015 PF02463 RecF/RecN/SMC N terminal domain NJR02_00020 PF00204 DNA gyrase B NJR02_00020 PF00986 DNA gyrase B subunit, carboxyl terminus NJR02_00020 PF18053 DNA gyrase B subunit insert domain NJR02_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_00020 PF01751 Toprim domain NJR02_00025 PF02311 AraC-like ligand binding domain NJR02_00025 PF12833 Helix-turn-helix domain NJR02_00030 PF12706 Beta-lactamase superfamily domain NJR02_00035 PF00011 Hsp20/alpha crystallin family NJR02_00040 PF00011 Hsp20/alpha crystallin family NJR02_00045 PF00155 Aminotransferase class I and II NJR02_00060 PF07690 Major Facilitator Superfamily NJR02_00065 PF00072 Response regulator receiver domain NJR02_00065 PF00486 Transcriptional regulatory protein, C terminal NJR02_00070 PF13493 Domain of unknown function (DUF4118) NJR02_00070 PF13492 GAF domain NJR02_00070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_00070 PF00512 His Kinase A (phospho-acceptor) domain NJR02_00070 PF02702 Osmosensitive K+ channel His kinase sensor domain NJR02_00075 PF02669 K+-transporting ATPase, c chain NJR02_00085 PF03814 Potassium-transporting ATPase A subunit NJR02_00090 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJR02_00090 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NJR02_00095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_00095 PF00512 His Kinase A (phospho-acceptor) domain NJR02_00095 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJR02_00100 PF00873 AcrB/AcrD/AcrF family NJR02_00105 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NJR02_00110 PF00440 Bacterial regulatory proteins, tetR family NJR02_00145 PF12146 Serine aminopeptidase, S33 NJR02_00150 PF12105 SpoU, rRNA methylase, C-terminal NJR02_00150 PF00588 SpoU rRNA Methylase family NJR02_00155 PF04607 Region found in RelA / SpoT proteins NJR02_00155 PF13291 ACT domain NJR02_00155 PF02824 TGS domain NJR02_00160 PF01192 RNA polymerase Rpb6 NJR02_00165 PF00625 Guanylate kinase NJR02_00170 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NJR02_00185 PF00892 EamA-like transporter family NJR02_00205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_00205 PF03466 LysR substrate binding domain NJR02_00210 PF00579 tRNA synthetases class I (W and Y) NJR02_00215 PF00582 Universal stress protein family NJR02_00220 PF07055 Enoyl reductase FAD binding domain NJR02_00220 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NJR02_00220 PF12241 Trans-2-enoyl-CoA reductase catalytic region NJR02_00225 PF05230 MASE2 domain NJR02_00225 PF00990 Diguanylate cyclase, GGDEF domain NJR02_00230 PF00210 Ferritin-like domain NJR02_00240 PF08721 TnsA endonuclease C terminal NJR02_00240 PF08722 TnsA endonuclease N terminal NJR02_00245 PF00665 Integrase core domain NJR02_00255 PF13401 AAA domain NJR02_00255 PF11426 Tn7 transposition regulator TnsC NJR02_00280 PF12161 HsdM N-terminal domain NJR02_00280 PF02384 N-6 DNA Methylase NJR02_00285 PF01420 Type I restriction modification DNA specificity domain NJR02_00295 PF11867 Domain of unknown function (DUF3387) NJR02_00295 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) NJR02_00295 PF18766 SWI2/SNF2 ATPase NJR02_00310 PF07690 Major Facilitator Superfamily NJR02_00315 PF01810 LysE type translocator NJR02_00330 PF05598 Transposase domain (DUF772) NJR02_00330 PF01609 Transposase DDE domain NJR02_00340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_00340 PF01627 Hpt domain NJR02_00340 PF00989 PAS fold NJR02_00340 PF00512 His Kinase A (phospho-acceptor) domain NJR02_00340 PF00072 Response regulator receiver domain NJR02_00340 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJR02_00345 PF00072 Response regulator receiver domain NJR02_00345 PF00989 PAS fold NJR02_00345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_00345 PF00512 His Kinase A (phospho-acceptor) domain NJR02_00345 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJR02_00345 PF01627 Hpt domain NJR02_00355 PF06580 Histidine kinase NJR02_00355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_00355 PF07694 5TMR of 5TMR-LYT NJR02_00360 PF04397 LytTr DNA-binding domain NJR02_00360 PF00072 Response regulator receiver domain NJR02_00365 PF07690 Major Facilitator Superfamily NJR02_00370 PF02222 ATP-grasp domain NJR02_00370 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NJR02_00375 PF00731 AIR carboxylase NJR02_00380 PF07715 TonB-dependent Receptor Plug Domain NJR02_00380 PF00593 TonB dependent receptor NJR02_00385 PF01177 Asp/Glu/Hydantoin racemase NJR02_00420 PF13607 Succinyl-CoA ligase like flavodoxin domain NJR02_00420 PF00583 Acetyltransferase (GNAT) family NJR02_00420 PF13380 CoA binding domain NJR02_00430 PF03466 LysR substrate binding domain NJR02_00430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_00435 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NJR02_00435 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NJR02_00440 PF00342 Phosphoglucose isomerase NJR02_00450 PF05552 Conserved TM helix NJR02_00450 PF00924 Mechanosensitive ion channel NJR02_00460 PF00440 Bacterial regulatory proteins, tetR family NJR02_00465 PF00692 dUTPase NJR02_00470 PF04127 DNA / pantothenate metabolism flavoprotein NJR02_00470 PF02441 Flavoprotein NJR02_00475 PF04002 RadC-like JAB domain NJR02_00480 PF00830 Ribosomal L28 family NJR02_00485 PF00471 Ribosomal protein L33 NJR02_00495 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NJR02_00495 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NJR02_00495 PF06827 Zinc finger found in FPG and IleRS NJR02_00500 PF04393 Protein of unknown function (DUF535) NJR02_00505 PF01467 Cytidylyltransferase-like NJR02_00510 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NJR02_00515 PF00535 Glycosyl transferase family 2 NJR02_00520 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NJR02_00525 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) NJR02_00535 PF08340 Domain of unknown function (DUF1732) NJR02_00535 PF03755 YicC-like family, N-terminal region NJR02_00540 PF01138 3' exoribonuclease family, domain 1 NJR02_00540 PF03725 3' exoribonuclease family, domain 2 NJR02_00545 PF00156 Phosphoribosyl transferase domain NJR02_00550 PF00403 Heavy-metal-associated domain NJR02_00555 PF00376 MerR family regulatory protein NJR02_00555 PF09278 MerR, DNA binding NJR02_00560 PF00360 Phytochrome region NJR02_00560 PF00990 Diguanylate cyclase, GGDEF domain NJR02_00560 PF00563 EAL domain NJR02_00560 PF01590 GAF domain NJR02_00565 PF06288 Protein of unknown function (DUF1040) NJR02_00570 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase NJR02_00570 PF12801 4Fe-4S binding domain NJR02_00570 PF13746 4Fe-4S dicluster domain NJR02_00575 PF01636 Phosphotransferase enzyme family NJR02_00580 PF01323 DSBA-like thioredoxin domain NJR02_00585 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_00590 PF00005 ABC transporter NJR02_00600 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NJR02_00600 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NJR02_00605 PF00857 Isochorismatase family NJR02_00615 PF04463 Protein of unknown function (DUF523) NJR02_00620 PF01553 Acyltransferase NJR02_00625 PF01553 Acyltransferase NJR02_00630 PF13335 Magnesium chelatase, subunit ChlI C-terminal NJR02_00630 PF01078 Magnesium chelatase, subunit ChlI NJR02_00635 PF00205 Thiamine pyrophosphate enzyme, central domain NJR02_00635 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NJR02_00635 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NJR02_00645 PF01063 Amino-transferase class IV NJR02_00650 PF00920 Dehydratase family NJR02_00655 PF00585 C-terminal regulatory domain of Threonine dehydratase NJR02_00655 PF00291 Pyridoxal-phosphate dependent enzyme NJR02_00660 PF01389 OmpA-like transmembrane domain NJR02_00660 PF00691 OmpA family NJR02_00670 PF00440 Bacterial regulatory proteins, tetR family NJR02_00675 PF00271 Helicase conserved C-terminal domain NJR02_00675 PF18074 Primosomal protein N C-terminal domain NJR02_00675 PF00270 DEAD/DEAH box helicase NJR02_00675 PF17764 3′ DNA-binding domain (3′BD) NJR02_00675 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NJR02_00680 PF01197 Ribosomal protein L31 NJR02_00685 PF13460 NAD(P)H-binding NJR02_00685 PF11066 Protein of unknown function (DUF2867) NJR02_00690 PF03949 Malic enzyme, NAD binding domain NJR02_00690 PF00390 Malic enzyme, N-terminal domain NJR02_00700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_00700 PF00512 His Kinase A (phospho-acceptor) domain NJR02_00700 PF00672 HAMP domain NJR02_00710 PF00072 Response regulator receiver domain NJR02_00710 PF00486 Transcriptional regulatory protein, C terminal NJR02_00715 PF05958 tRNA (Uracil-5-)-methyltransferase NJR02_00730 PF02903 Alpha amylase, N-terminal ig-like domain NJR02_00730 PF00128 Alpha amylase, catalytic domain NJR02_00745 PF00012 Hsp70 protein NJR02_00750 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NJR02_00750 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NJR02_00755 PF05981 CreA protein NJR02_00770 PF01258 Prokaryotic dksA/traR C4-type zinc finger NJR02_00775 PF00120 Glutamine synthetase, catalytic domain NJR02_00780 PF00202 Aminotransferase class-III NJR02_00785 PF13416 Bacterial extracellular solute-binding protein NJR02_00790 PF13416 Bacterial extracellular solute-binding protein NJR02_00795 PF00005 ABC transporter NJR02_00795 PF08402 TOBE domain NJR02_00800 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_00805 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_00810 PF03475 3-alpha domain NJR02_00810 PF03473 MOSC domain NJR02_00825 PF03061 Thioesterase superfamily NJR02_00830 PF00271 Helicase conserved C-terminal domain NJR02_00830 PF00570 HRDC domain NJR02_00830 PF16124 RecQ zinc-binding NJR02_00830 PF09382 RQC domain NJR02_00830 PF00270 DEAD/DEAH box helicase NJR02_00835 PF00034 Cytochrome c NJR02_00840 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NJR02_00850 PF02592 Putative vitamin uptake transporter NJR02_00855 PF03737 Aldolase/RraA NJR02_00860 PF00571 CBS domain NJR02_00860 PF01769 Divalent cation transporter NJR02_00860 PF03448 MgtE intracellular N domain NJR02_00865 PF14824 Sirohaem biosynthesis protein central NJR02_00865 PF10414 Sirohaem synthase dimerisation region NJR02_00865 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NJR02_00870 PF01226 Formate/nitrite transporter NJR02_00875 PF13806 Rieske-like [2Fe-2S] domain NJR02_00880 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NJR02_00880 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NJR02_00880 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJR02_00880 PF18267 Rubredoxin NAD+ reductase C-terminal domain NJR02_00880 PF04324 BFD-like [2Fe-2S] binding domain NJR02_00895 PF00005 ABC transporter NJR02_00900 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NJR02_00915 PF07690 Major Facilitator Superfamily NJR02_00920 PF10431 C-terminal, D2-small domain, of ClpB protein NJR02_00920 PF00004 ATPase family associated with various cellular activities (AAA) NJR02_00920 PF07724 AAA domain (Cdc48 subfamily) NJR02_00925 PF00227 Proteasome subunit NJR02_00935 PF03485 Arginyl tRNA synthetase N terminal domain NJR02_00935 PF05746 DALR anticodon binding domain NJR02_00935 PF00750 tRNA synthetases class I (R) NJR02_00945 PF04545 Sigma-70, region 4 NJR02_00945 PF04542 Sigma-70 region 2 NJR02_00950 PF12973 ChrR Cupin-like domain NJR02_00955 PF02673 Bacitracin resistance protein BacA NJR02_00960 PF00248 Aldo/keto reductase family NJR02_00965 PF01263 Aldose 1-epimerase NJR02_00970 PF08544 GHMP kinases C terminal NJR02_00970 PF10509 Galactokinase galactose-binding signature NJR02_00970 PF00288 GHMP kinases N terminal domain NJR02_00975 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain NJR02_00975 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain NJR02_00980 PF16363 GDP-mannose 4,6 dehydratase NJR02_00985 PF00356 Bacterial regulatory proteins, lacI family NJR02_00995 PF00703 Glycosyl hydrolases family 2 NJR02_00995 PF02836 Glycosyl hydrolases family 2, TIM barrel domain NJR02_00995 PF16353 Domain of unknown function(DUF4981) NJR02_00995 PF02929 Beta galactosidase small chain NJR02_00995 PF02837 Glycosyl hydrolases family 2, sugar binding domain NJR02_01000 PF13407 Periplasmic binding protein domain NJR02_01005 PF00005 ABC transporter NJR02_01010 PF02653 Branched-chain amino acid transport system / permease component NJR02_01015 PF02743 Cache domain NJR02_01015 PF00672 HAMP domain NJR02_01015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJR02_01030 PF00696 Amino acid kinase family NJR02_01035 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NJR02_01035 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NJR02_01040 PF03606 C4-dicarboxylate anaerobic carrier NJR02_01045 PF01316 Arginine repressor, DNA binding domain NJR02_01045 PF02863 Arginine repressor, C-terminal domain NJR02_01050 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain NJR02_01050 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain NJR02_01055 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NJR02_01055 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NJR02_01080 PF00672 HAMP domain NJR02_01080 PF02743 Cache domain NJR02_01080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJR02_01090 PF08212 Lipocalin-like domain NJR02_01095 PF12833 Helix-turn-helix domain NJR02_01095 PF06719 AraC-type transcriptional regulator N-terminus NJR02_01100 PF00465 Iron-containing alcohol dehydrogenase NJR02_01105 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch NJR02_01105 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NJR02_01105 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NJR02_01110 PF02233 NAD(P) transhydrogenase beta subunit NJR02_01115 PF13309 HTH domain NJR02_01115 PF08348 YheO-like PAS domain NJR02_01120 PF03313 Serine dehydratase alpha chain NJR02_01125 PF13525 Outer membrane lipoprotein NJR02_01130 PF00849 RNA pseudouridylate synthase NJR02_01130 PF01479 S4 domain NJR02_01135 PF02578 Multi-copper polyphenol oxidoreductase laccase NJR02_01140 PF07724 AAA domain (Cdc48 subfamily) NJR02_01140 PF10431 C-terminal, D2-small domain, of ClpB protein NJR02_01140 PF02861 Clp amino terminal domain, pathogenicity island component NJR02_01140 PF17871 AAA lid domain NJR02_01140 PF00004 ATPase family associated with various cellular activities (AAA) NJR02_01150 PF03590 Aspartate-ammonia ligase NJR02_01155 PF01037 Lrp/AsnC ligand binding domain NJR02_01165 PF00478 IMP dehydrogenase / GMP reductase domain NJR02_01165 PF00571 CBS domain NJR02_01185 PF00512 His Kinase A (phospho-acceptor) domain NJR02_01185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_01195 PF00072 Response regulator receiver domain NJR02_01195 PF00158 Sigma-54 interaction domain NJR02_01200 PF06496 Protein of unknown function (DUF1097) NJR02_01205 PF00174 Oxidoreductase molybdopterin binding domain NJR02_01210 PF01794 Ferric reductase like transmembrane component NJR02_01225 PF00072 Response regulator receiver domain NJR02_01225 PF00486 Transcriptional regulatory protein, C terminal NJR02_01230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_01240 PF00384 Molybdopterin oxidoreductase NJR02_01240 PF18364 Molybdopterin oxidoreductase N-terminal domain NJR02_01240 PF01568 Molydopterin dinucleotide binding domain NJR02_01245 PF03264 NapC/NirT cytochrome c family, N-terminal region NJR02_01250 PF01751 Toprim domain NJR02_01250 PF01131 DNA topoisomerase NJR02_01255 PF02386 Cation transport protein NJR02_01260 PF02080 TrkA-C domain NJR02_01260 PF02254 TrkA-N domain NJR02_01265 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NJR02_01265 PF01565 FAD binding domain NJR02_01270 PF03099 Biotin/lipoate A/B protein ligase family NJR02_01270 PF08279 HTH domain NJR02_01270 PF02237 Biotin protein ligase C terminal domain NJR02_01275 PF00485 Phosphoribulokinase / Uridine kinase family NJR02_01290 PF00009 Elongation factor Tu GTP binding domain NJR02_01290 PF03144 Elongation factor Tu domain 2 NJR02_01290 PF03143 Elongation factor Tu C-terminal domain NJR02_01300 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NJR02_01305 PF00467 KOW motif NJR02_01305 PF02357 Transcription termination factor nusG NJR02_01310 PF00298 Ribosomal protein L11, RNA binding domain NJR02_01310 PF03946 Ribosomal protein L11, N-terminal domain NJR02_01315 PF00687 Ribosomal protein L1p/L10e family NJR02_01320 PF00466 Ribosomal protein L10 NJR02_01325 PF00542 Ribosomal protein L7/L12 C-terminal domain NJR02_01325 PF16320 Ribosomal protein L7/L12 dimerisation domain NJR02_01330 PF04563 RNA polymerase beta subunit NJR02_01330 PF04561 RNA polymerase Rpb2, domain 2 NJR02_01330 PF04565 RNA polymerase Rpb2, domain 3 NJR02_01330 PF10385 RNA polymerase beta subunit external 1 domain NJR02_01330 PF04560 RNA polymerase Rpb2, domain 7 NJR02_01330 PF00562 RNA polymerase Rpb2, domain 6 NJR02_01335 PF04997 RNA polymerase Rpb1, domain 1 NJR02_01335 PF00623 RNA polymerase Rpb1, domain 2 NJR02_01335 PF04983 RNA polymerase Rpb1, domain 3 NJR02_01335 PF05000 RNA polymerase Rpb1, domain 4 NJR02_01335 PF04998 RNA polymerase Rpb1, domain 5 NJR02_01340 PF08348 YheO-like PAS domain NJR02_01340 PF13309 HTH domain NJR02_01345 PF01042 Endoribonuclease L-PSP NJR02_01350 PF02635 DsrE/DsrF-like family NJR02_01355 PF02635 DsrE/DsrF-like family NJR02_01360 PF04077 DsrH like protein NJR02_01365 PF00164 Ribosomal protein S12/S23 NJR02_01370 PF00177 Ribosomal protein S7p/S5e NJR02_01375 PF00679 Elongation factor G C-terminus NJR02_01375 PF14492 Elongation Factor G, domain II NJR02_01375 PF03764 Elongation factor G, domain IV NJR02_01375 PF00009 Elongation factor Tu GTP binding domain NJR02_01375 PF03144 Elongation factor Tu domain 2 NJR02_01380 PF00009 Elongation factor Tu GTP binding domain NJR02_01380 PF03144 Elongation factor Tu domain 2 NJR02_01380 PF03143 Elongation factor Tu C-terminal domain NJR02_01415 PF03079 ARD/ARD' family NJR02_01420 PF00860 Permease family NJR02_01425 PF02733 Dak1 domain NJR02_01430 PF02734 DAK2 domain NJR02_01435 PF00381 PTS HPr component phosphorylation site NJR02_01435 PF05524 PEP-utilising enzyme, N-terminal NJR02_01435 PF03610 PTS system fructose IIA component NJR02_01435 PF00391 PEP-utilising enzyme, mobile domain NJR02_01440 PF02954 Bacterial regulatory protein, Fis family NJR02_01440 PF00989 PAS fold NJR02_01440 PF00158 Sigma-54 interaction domain NJR02_01455 PF00106 short chain dehydrogenase NJR02_01460 PF01594 AI-2E family transporter NJR02_01465 PF00293 NUDIX domain NJR02_01485 PF00199 Catalase NJR02_01485 PF06628 Catalase-related immune-responsive NJR02_01490 PF00583 Acetyltransferase (GNAT) family NJR02_01510 PF00990 Diguanylate cyclase, GGDEF domain NJR02_01510 PF00072 Response regulator receiver domain NJR02_01520 PF08402 TOBE domain NJR02_01520 PF00005 ABC transporter NJR02_01530 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_01545 PF00392 Bacterial regulatory proteins, gntR family NJR02_01545 PF07702 UTRA domain NJR02_01555 PF03466 LysR substrate binding domain NJR02_01555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_01565 PF02678 Pirin NJR02_01565 PF17954 Quercetinase C-terminal cupin domain NJR02_01570 PF07681 DoxX NJR02_01575 PF17946 RecC C-terminal domain NJR02_01580 PF13361 UvrD-like helicase C-terminal domain NJR02_01580 PF00580 UvrD/REP helicase N-terminal domain NJR02_01580 PF12705 PD-(D/E)XK nuclease superfamily NJR02_01585 PF13538 UvrD-like helicase C-terminal domain NJR02_01600 PF00909 Ammonium Transporter Family NJR02_01605 PF00543 Nitrogen regulatory protein P-II NJR02_01610 PF00990 Diguanylate cyclase, GGDEF domain NJR02_01610 PF08448 PAS fold NJR02_01620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJR02_01620 PF00672 HAMP domain NJR02_01630 PF00072 Response regulator receiver domain NJR02_01630 PF00486 Transcriptional regulatory protein, C terminal NJR02_01635 PF00672 HAMP domain NJR02_01635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_01635 PF00512 His Kinase A (phospho-acceptor) domain NJR02_01640 PF00313 'Cold-shock' DNA-binding domain NJR02_01660 PF00436 Single-strand binding protein family NJR02_01665 PF00196 Bacterial regulatory proteins, luxR family NJR02_01670 PF00005 ABC transporter NJR02_01670 PF17755 UvrA DNA-binding domain NJR02_01670 PF17760 UvrA interaction domain NJR02_01675 PF03922 OmpW family NJR02_01680 PF12729 Four helix bundle sensory module for signal transduction NJR02_01680 PF00672 HAMP domain NJR02_01680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJR02_01695 PF02219 Methylenetetrahydrofolate reductase NJR02_01705 PF03594 Benzoate membrane transport protein NJR02_01710 PF07883 Cupin domain NJR02_01710 PF01381 Helix-turn-helix NJR02_01740 PF04363 Protein of unknown function (DUF496) NJR02_01750 PF04751 Protein of unknown function (DUF615) NJR02_01755 PF01523 Putative modulator of DNA gyrase NJR02_01760 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NJR02_01765 PF01722 BolA-like protein NJR02_01775 PF05494 MlaC protein NJR02_01780 PF02470 MlaD protein NJR02_01785 PF02405 Permease MlaE NJR02_01790 PF00005 ABC transporter NJR02_01795 PF00571 CBS domain NJR02_01795 PF01380 SIS domain NJR02_01810 PF03968 OstA-like protein NJR02_01815 PF00005 ABC transporter NJR02_01815 PF12399 Branched-chain amino acid ATP-binding cassette transporter NJR02_01820 PF00309 Sigma-54 factor, Activator interacting domain (AID) NJR02_01820 PF04963 Sigma-54 factor, core binding domain NJR02_01820 PF04552 Sigma-54, DNA binding domain NJR02_01825 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NJR02_01830 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NJR02_01835 PF03668 P-loop ATPase protein family NJR02_01840 PF00381 PTS HPr component phosphorylation site NJR02_01845 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NJR02_01845 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NJR02_01845 PF02378 Phosphotransferase system, EIIC NJR02_01850 PF07071 KDGP aldolase NJR02_01855 PF03841 L-seryl-tRNA selenium transferase NJR02_01860 PF01979 Amidohydrolase family NJR02_01890 PF13180 PDZ domain NJR02_01895 PF13180 PDZ domain NJR02_01895 PF00595 PDZ domain NJR02_01905 PF03969 AFG1-like ATPase NJR02_01910 PF00572 Ribosomal protein L13 NJR02_01915 PF00380 Ribosomal protein S9/S16 NJR02_01920 PF00355 Rieske [2Fe-2S] domain NJR02_01920 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal NJR02_01925 PF00032 Cytochrome b(C-terminal)/b6/petD NJR02_01925 PF00033 Cytochrome b/b6/petB NJR02_01930 PF02167 Cytochrome C1 family NJR02_01935 PF00043 Glutathione S-transferase, C-terminal domain NJR02_01935 PF02798 Glutathione S-transferase, N-terminal domain NJR02_01940 PF04386 Stringent starvation protein B NJR02_01945 PF04972 BON domain NJR02_01950 PF13580 SIS domain NJR02_01955 PF02021 Uncharacterised protein family UPF0102 NJR02_01960 PF04348 LppC putative lipoprotein NJR02_01965 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NJR02_01980 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NJR02_01985 PF00813 FliP family NJR02_01990 PF01313 Bacterial export proteins, family 3 NJR02_01995 PF01311 Bacterial export proteins, family 1 NJR02_02000 PF01312 FlhB HrpN YscU SpaS Family NJR02_02005 PF00771 FHIPEP family NJR02_02015 PF01609 Transposase DDE domain NJR02_02020 PF00144 Beta-lactamase NJR02_02025 PF01609 Transposase DDE domain NJR02_02035 PF02049 Flagellar hook-basal body complex protein FliE NJR02_02040 PF08345 Flagellar M-ring protein C-terminal NJR02_02040 PF01514 Secretory protein of YscJ/FliF family NJR02_02045 PF01706 FliG C-terminal domain NJR02_02045 PF14841 FliG middle domain NJR02_02045 PF14842 FliG N-terminal domain NJR02_02055 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NJR02_02055 PF18269 T3SS EscN ATPase C-terminal domain NJR02_02075 PF13144 Chaperone for flagella basal body P-ring formation NJR02_02080 PF00460 Flagella basal body rod protein NJR02_02085 PF00460 Flagella basal body rod protein NJR02_02085 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NJR02_02090 PF13861 FlgD Tudor-like domain NJR02_02090 PF13860 FlgD Ig-like domain NJR02_02090 PF03963 Flagellar hook capping protein - N-terminal region NJR02_02095 PF07559 Flagellar basal body protein FlaE NJR02_02095 PF00460 Flagella basal body rod protein NJR02_02095 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NJR02_02100 PF00460 Flagella basal body rod protein NJR02_02100 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NJR02_02105 PF00460 Flagella basal body rod protein NJR02_02105 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NJR02_02110 PF02107 Flagellar L-ring protein NJR02_02115 PF02119 Flagellar P-ring protein NJR02_02125 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NJR02_02125 PF00460 Flagella basal body rod protein NJR02_02130 PF00669 Bacterial flagellin N-terminal helical region NJR02_02145 PF00700 Bacterial flagellin C-terminal helical region NJR02_02145 PF00669 Bacterial flagellin N-terminal helical region NJR02_02150 PF00700 Bacterial flagellin C-terminal helical region NJR02_02150 PF00669 Bacterial flagellin N-terminal helical region NJR02_02155 PF02465 Flagellar hook-associated protein 2 N-terminus NJR02_02155 PF07195 Flagellar hook-associated protein 2 C-terminus NJR02_02155 PF07196 Flagellin hook IN motif NJR02_02160 PF02561 Flagellar protein FliS NJR02_02180 PF04545 Sigma-70, region 4 NJR02_02180 PF04542 Sigma-70 region 2 NJR02_02185 PF01618 MotA/TolQ/ExbB proton channel family NJR02_02190 PF00691 OmpA family NJR02_02190 PF13677 Membrane MotB of proton-channel complex MotA/MotB NJR02_02200 PF01476 LysM domain NJR02_02200 PF01464 Transglycosylase SLT domain NJR02_02210 PF02381 MraZ protein, putative antitoxin-like NJR02_02215 PF01795 MraW methylase family NJR02_02220 PF04999 Cell division protein FtsL NJR02_02225 PF03717 Penicillin-binding Protein dimerisation domain NJR02_02225 PF00905 Penicillin binding protein transpeptidase domain NJR02_02230 PF02875 Mur ligase family, glutamate ligase domain NJR02_02230 PF08245 Mur ligase middle domain NJR02_02230 PF01225 Mur ligase family, catalytic domain NJR02_02235 PF01225 Mur ligase family, catalytic domain NJR02_02235 PF02875 Mur ligase family, glutamate ligase domain NJR02_02235 PF08245 Mur ligase middle domain NJR02_02240 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 NJR02_02240 PF00953 Glycosyl transferase family 4 NJR02_02245 PF02875 Mur ligase family, glutamate ligase domain NJR02_02245 PF08245 Mur ligase middle domain NJR02_02250 PF01098 Cell cycle protein NJR02_02255 PF03033 Glycosyltransferase family 28 N-terminal domain NJR02_02255 PF04101 Glycosyltransferase family 28 C-terminal domain NJR02_02260 PF08245 Mur ligase middle domain NJR02_02260 PF02875 Mur ligase family, glutamate ligase domain NJR02_02260 PF01225 Mur ligase family, catalytic domain NJR02_02265 PF08478 POTRA domain, FtsQ-type NJR02_02265 PF03799 Cell division protein FtsQ NJR02_02270 PF02491 SHS2 domain inserted in FTSA NJR02_02275 PF00091 Tubulin/FtsZ family, GTPase domain NJR02_02275 PF12327 FtsZ family, C-terminal domain NJR02_02280 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase NJR02_02290 PF07516 SecA Wing and Scaffold domain NJR02_02290 PF07517 SecA DEAD-like domain NJR02_02290 PF02810 SEC-C motif NJR02_02290 PF01043 SecA preprotein cross-linking domain NJR02_02300 PF00293 NUDIX domain NJR02_02305 PF03884 DNA gyrase inhibitor YacG NJR02_02310 PF07072 Cell division protein NJR02_02315 PF01121 Dephospho-CoA kinase NJR02_02320 PF06750 Bacterial Peptidase A24 N-terminal domain NJR02_02320 PF01478 Type IV leader peptidase family NJR02_02325 PF00482 Type II secretion system (T2SS), protein F NJR02_02330 PF00437 Type II/IV secretion system protein NJR02_02330 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NJR02_02335 PF07963 Prokaryotic N-terminal methylation motif NJR02_02340 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NJR02_02340 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NJR02_02350 PF01510 N-acetylmuramoyl-L-alanine amidase NJR02_02355 PF00392 Bacterial regulatory proteins, gntR family NJR02_02355 PF07729 FCD domain NJR02_02360 PF00456 Transketolase, thiamine diphosphate binding domain NJR02_02360 PF17831 Pyruvate dehydrogenase E1 component middle domain NJR02_02365 PF00364 Biotin-requiring enzyme NJR02_02365 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NJR02_02365 PF02817 e3 binding domain NJR02_02370 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NJR02_02370 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJR02_02380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJR02_02380 PF12729 Four helix bundle sensory module for signal transduction NJR02_02380 PF00672 HAMP domain NJR02_02385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJR02_02385 PF00672 HAMP domain NJR02_02385 PF12729 Four helix bundle sensory module for signal transduction NJR02_02390 PF01734 Patatin-like phospholipase NJR02_02395 PF11791 Aconitate B N-terminal domain NJR02_02395 PF00330 Aconitase family (aconitate hydratase) NJR02_02395 PF06434 Aconitate hydratase 2 N-terminus NJR02_02400 PF00563 EAL domain NJR02_02400 PF12792 CSS motif domain associated with EAL NJR02_02405 PF03466 LysR substrate binding domain NJR02_02405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_02410 PF01810 LysE type translocator NJR02_02415 PF04030 D-arabinono-1,4-lactone oxidase NJR02_02415 PF01565 FAD binding domain NJR02_02420 PF07683 Cobalamin synthesis protein cobW C-terminal domain NJR02_02420 PF02492 CobW/HypB/UreG, nucleotide-binding domain NJR02_02425 PF07690 Major Facilitator Superfamily NJR02_02435 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NJR02_02440 PF02152 Dihydroneopterin aldolase NJR02_02445 PF02660 Glycerol-3-phosphate acyltransferase NJR02_02490 PF00892 EamA-like transporter family NJR02_02495 PF01037 Lrp/AsnC ligand binding domain NJR02_02500 PF14602 Hexapeptide repeat of succinyl-transferase NJR02_02500 PF12464 Maltose acetyltransferase NJR02_02505 PF11941 Domain of unknown function (DUF3459) NJR02_02505 PF00128 Alpha amylase, catalytic domain NJR02_02510 PF00367 phosphotransferase system, EIIB NJR02_02510 PF02378 Phosphotransferase system, EIIC NJR02_02515 PF00356 Bacterial regulatory proteins, lacI family NJR02_02530 PF17763 Glutaminase/Asparaginase C-terminal domain NJR02_02530 PF00710 Asparaginase, N-terminal NJR02_02545 PF02142 MGS-like domain NJR02_02550 PF00210 Ferritin-like domain NJR02_02565 PF17176 tRNA-binding domain NJR02_02565 PF05127 Helicase NJR02_02565 PF13718 GNAT acetyltransferase 2 NJR02_02565 PF08351 Domain of unknown function (DUF1726) NJR02_02570 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NJR02_02570 PF02790 Cytochrome C oxidase subunit II, transmembrane domain NJR02_02575 PF00115 Cytochrome C and Quinol oxidase polypeptide I NJR02_02580 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 NJR02_02585 PF00510 Cytochrome c oxidase subunit III NJR02_02610 PF01040 UbiA prenyltransferase family NJR02_02615 PF00171 Aldehyde dehydrogenase family NJR02_02620 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_02625 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_02630 PF08402 TOBE domain NJR02_02630 PF00005 ABC transporter NJR02_02635 PF13416 Bacterial extracellular solute-binding protein NJR02_02640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_02640 PF03466 LysR substrate binding domain NJR02_02645 PF03553 Na+/H+ antiporter family NJR02_02685 PF00534 Glycosyl transferases group 1 NJR02_02685 PF08323 Starch synthase catalytic domain NJR02_02690 PF00483 Nucleotidyl transferase NJR02_02695 PF08468 Methyltransferase small domain N-terminal NJR02_02695 PF05175 Methyltransferase small domain NJR02_02700 PF00701 Dihydrodipicolinate synthetase family NJR02_02705 PF00990 Diguanylate cyclase, GGDEF domain NJR02_02705 PF01590 GAF domain NJR02_02705 PF00563 EAL domain NJR02_02705 PF00360 Phytochrome region NJR02_02710 PF13419 Haloacid dehalogenase-like hydrolase NJR02_02715 PF17209 Hfq protein NJR02_02720 PF04403 Paraquat-inducible protein A NJR02_02725 PF02470 MlaD protein NJR02_02730 PF03886 ABC-type transport auxiliary lipoprotein component NJR02_02735 PF00691 OmpA family NJR02_02735 PF01389 OmpA-like transmembrane domain NJR02_02740 PF00657 GDSL-like Lipase/Acylhydrolase NJR02_02750 PF01464 Transglycosylase SLT domain NJR02_02750 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain NJR02_02755 PF04362 Bacterial Fe(2+) trafficking NJR02_02760 PF00633 Helix-hairpin-helix motif NJR02_02760 PF00730 HhH-GPD superfamily base excision DNA repair protein NJR02_02760 PF14815 NUDIX domain NJR02_02760 PF10576 Iron-sulfur binding domain of endonuclease III NJR02_02765 PF16537 Type II secretion system protein B NJR02_02770 PF13401 AAA domain NJR02_02770 PF01471 Putative peptidoglycan binding domain NJR02_02775 PF01966 HD domain NJR02_02775 PF01743 Poly A polymerase head domain NJR02_02775 PF12627 Probable RNA and SrmB- binding site of polymerase A NJR02_02780 PF01384 Phosphate transporter family NJR02_02785 PF01865 Protein of unknown function DUF47 NJR02_02790 PF01928 CYTH domain NJR02_02795 PF05433 Glycine zipper 2TM domain NJR02_02800 PF00583 Acetyltransferase (GNAT) family NJR02_02805 PF01321 Creatinase/Prolidase N-terminal domain NJR02_02805 PF00557 Metallopeptidase family M24 NJR02_02810 PF00392 Bacterial regulatory proteins, gntR family NJR02_02815 PF01293 Phosphoenolpyruvate carboxykinase NJR02_02820 PF01430 Hsp33 protein NJR02_02825 PF01479 S4 domain NJR02_02830 PF11356 Type II secretion system protein C NJR02_02835 PF00263 Bacterial type II and III secretion system protein NJR02_02835 PF03958 Bacterial type II/III secretion system short domain NJR02_02840 PF00437 Type II/IV secretion system protein NJR02_02845 PF00482 Type II secretion system (T2SS), protein F NJR02_02850 PF07963 Prokaryotic N-terminal methylation motif NJR02_02850 PF08334 Type II secretion system (T2SS), protein G NJR02_02855 PF12019 Type II transport protein GspH NJR02_02855 PF07963 Prokaryotic N-terminal methylation motif NJR02_02860 PF07963 Prokaryotic N-terminal methylation motif NJR02_02860 PF02501 Type II secretion system (T2SS), protein I NJR02_02865 PF07963 Prokaryotic N-terminal methylation motif NJR02_02865 PF11612 Type II secretion system (T2SS), protein J NJR02_02875 PF03934 Type II secretion system (T2SS), protein K NJR02_02880 PF05134 Type II secretion system (T2SS), protein L NJR02_02880 PF12693 GspL periplasmic domain NJR02_02885 PF04612 Type II secretion system (T2SS), protein M NJR02_02890 PF01203 Type II secretion system (T2SS), protein N NJR02_02895 PF00196 Bacterial regulatory proteins, luxR family NJR02_02900 PF00579 tRNA synthetases class I (W and Y) NJR02_02900 PF01479 S4 domain NJR02_02905 PF03466 LysR substrate binding domain NJR02_02905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_02910 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NJR02_02915 PF13419 Haloacid dehalogenase-like hydrolase NJR02_02920 PF00293 NUDIX domain NJR02_02925 PF00459 Inositol monophosphatase family NJR02_02930 PF03222 Tryptophan/tyrosine permease family NJR02_02935 PF01588 Putative tRNA binding domain NJR02_02945 PF01340 Met Apo-repressor, MetJ NJR02_02950 PF01053 Cys/Met metabolism PLP-dependent enzyme NJR02_02955 PF00696 Amino acid kinase family NJR02_02955 PF00742 Homoserine dehydrogenase NJR02_02955 PF03447 Homoserine dehydrogenase, NAD binding domain NJR02_02960 PF04172 LrgB-like family NJR02_02965 PF03788 LrgA family NJR02_02970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_02970 PF03466 LysR substrate binding domain NJR02_02985 PF00155 Aminotransferase class I and II NJR02_02985 PF00392 Bacterial regulatory proteins, gntR family NJR02_03005 PF04073 Aminoacyl-tRNA editing domain NJR02_03010 PF08448 PAS fold NJR02_03010 PF08447 PAS fold NJR02_03010 PF05231 MASE1 NJR02_03010 PF13426 PAS domain NJR02_03010 PF00563 EAL domain NJR02_03010 PF00990 Diguanylate cyclase, GGDEF domain NJR02_03015 PF00311 Phosphoenolpyruvate carboxylase NJR02_03020 PF07687 Peptidase dimerisation domain NJR02_03020 PF01546 Peptidase family M20/M25/M40 NJR02_03025 PF01118 Semialdehyde dehydrogenase, NAD binding domain NJR02_03025 PF02774 Semialdehyde dehydrogenase, dimerisation domain NJR02_03030 PF00696 Amino acid kinase family NJR02_03035 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NJR02_03035 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NJR02_03040 PF00764 Arginosuccinate synthase NJR02_03045 PF00206 Lyase NJR02_03045 PF14698 Argininosuccinate lyase C-terminal NJR02_03050 PF13542 Helix-turn-helix domain of transposase family ISL3 NJR02_03050 PF01610 Transposase NJR02_03050 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NJR02_03055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_03055 PF03466 LysR substrate binding domain NJR02_03065 PF14552 Tautomerase enzyme NJR02_03095 PF12464 Maltose acetyltransferase NJR02_03095 PF14602 Hexapeptide repeat of succinyl-transferase NJR02_03100 PF13194 Domain of unknown function (DUF4010) NJR02_03105 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJR02_03110 PF00005 ABC transporter NJR02_03115 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_03120 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_03125 PF00291 Pyridoxal-phosphate dependent enzyme NJR02_03130 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NJR02_03130 PF00326 Prolyl oligopeptidase family NJR02_03145 PF03710 Glutamate-ammonia ligase adenylyltransferase NJR02_03145 PF08335 GlnD PII-uridylyltransferase NJR02_03155 PF02743 Cache domain NJR02_03155 PF00672 HAMP domain NJR02_03155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJR02_03160 PF00520 Ion transport protein NJR02_03160 PF00027 Cyclic nucleotide-binding domain NJR02_03165 PF08239 Bacterial SH3 domain NJR02_03170 PF09297 NADH pyrophosphatase zinc ribbon domain NJR02_03170 PF00293 NUDIX domain NJR02_03175 PF01208 Uroporphyrinogen decarboxylase (URO-D) NJR02_03180 PF00480 ROK family NJR02_03185 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NJR02_03185 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NJR02_03190 PF00162 Phosphoglycerate kinase NJR02_03195 PF01116 Fructose-bisphosphate aldolase class-II NJR02_03200 PF01266 FAD dependent oxidoreductase NJR02_03215 PF11412 Disulphide bond corrector protein DsbC NJR02_03215 PF02683 Cytochrome C biogenesis protein transmembrane region NJR02_03220 PF03091 CutA1 divalent ion tolerance protein NJR02_03235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_03235 PF03466 LysR substrate binding domain NJR02_03240 PF01571 Aminomethyltransferase folate-binding domain NJR02_03245 PF03937 Flavinator of succinate dehydrogenase NJR02_03255 PF02910 Fumarate reductase flavoprotein C-term NJR02_03255 PF00890 FAD binding domain NJR02_03260 PF08281 Sigma-70, region 4 NJR02_03260 PF04542 Sigma-70 region 2 NJR02_03265 PF03872 Anti sigma-E protein RseA, N-terminal domain NJR02_03265 PF03873 Anti sigma-E protein RseA, C-terminal domain NJR02_03270 PF03888 MucB/RseB N-terminal domain NJR02_03270 PF17188 MucB/RseB C-terminal domain NJR02_03280 PF00009 Elongation factor Tu GTP binding domain NJR02_03280 PF00679 Elongation factor G C-terminus NJR02_03280 PF06421 GTP-binding protein LepA C-terminus NJR02_03280 PF03144 Elongation factor Tu domain 2 NJR02_03285 PF10502 Signal peptidase, peptidase S26 NJR02_03290 PF14622 Ribonuclease-III-like NJR02_03290 PF00035 Double-stranded RNA binding motif NJR02_03295 PF07650 KH domain NJR02_03295 PF01926 50S ribosome-binding GTPase NJR02_03300 PF02565 Recombination protein O C terminal NJR02_03300 PF11967 Recombination protein O N terminal NJR02_03305 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ NJR02_03310 PF01510 N-acetylmuramoyl-L-alanine amidase NJR02_03315 PF07308 Protein of unknown function (DUF1456) NJR02_03320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_03320 PF00072 Response regulator receiver domain NJR02_03320 PF00512 His Kinase A (phospho-acceptor) domain NJR02_03320 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NJR02_03320 PF01627 Hpt domain NJR02_03320 PF00672 HAMP domain NJR02_03325 PF05958 tRNA (Uracil-5-)-methyltransferase NJR02_03325 PF01938 TRAM domain NJR02_03330 PF02824 TGS domain NJR02_03330 PF04607 Region found in RelA / SpoT proteins NJR02_03330 PF13291 ACT domain NJR02_03335 PF03819 MazG nucleotide pyrophosphohydrolase domain NJR02_03340 PF00117 Glutamine amidotransferase class-I NJR02_03340 PF06418 CTP synthase N-terminus NJR02_03345 PF00113 Enolase, C-terminal TIM barrel domain NJR02_03345 PF03952 Enolase, N-terminal domain NJR02_03350 PF04977 Septum formation initiator NJR02_03355 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NJR02_03360 PF02542 YgbB family NJR02_03365 PF01142 tRNA pseudouridine synthase D (TruD) NJR02_03370 PF01975 Survival protein SurE NJR02_03380 PF09335 SNARE associated Golgi protein NJR02_03385 PF01476 LysM domain NJR02_03385 PF01551 Peptidase family M23 NJR02_03390 PF00140 Sigma-70 factor, region 1.2 NJR02_03390 PF04542 Sigma-70 region 2 NJR02_03390 PF04539 Sigma-70 region 3 NJR02_03390 PF04545 Sigma-70, region 4 NJR02_03395 PF00814 Glycoprotease family NJR02_03400 PF01165 Ribosomal protein S21 NJR02_03405 PF09424 Yqey-like protein NJR02_03410 PF08275 DNA primase catalytic core, N-terminal domain NJR02_03410 PF01807 CHC2 zinc finger NJR02_03410 PF10410 DnaB-helicase binding domain of primase NJR02_03410 PF08278 DNA primase DnaG DnaB-binding NJR02_03415 PF04546 Sigma-70, non-essential region NJR02_03415 PF03979 Sigma-70 factor, region 1.1 NJR02_03415 PF04545 Sigma-70, region 4 NJR02_03415 PF04542 Sigma-70 region 2 NJR02_03415 PF04539 Sigma-70 region 3 NJR02_03415 PF00140 Sigma-70 factor, region 1.2 NJR02_03430 PF01609 Transposase DDE domain NJR02_03430 PF05598 Transposase domain (DUF772) NJR02_03450 PF00128 Alpha amylase, catalytic domain NJR02_03465 PF02843 Phosphoribosylglycinamide synthetase, C domain NJR02_03465 PF02844 Phosphoribosylglycinamide synthetase, N domain NJR02_03465 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NJR02_03470 PF01808 AICARFT/IMPCHase bienzyme NJR02_03470 PF02142 MGS-like domain NJR02_03475 PF13411 MerR HTH family regulatory protein NJR02_03485 PF03889 Alternative ribosome-rescue factor A NJR02_03490 PF06969 HemN C-terminal domain NJR02_03490 PF04055 Radical SAM superfamily NJR02_03495 PF01725 Ham1 family NJR02_03500 PF07690 Major Facilitator Superfamily NJR02_03505 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NJR02_03505 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NJR02_03515 PF01957 NfeD-like C-terminal, partner-binding NJR02_03520 PF01145 SPFH domain / Band 7 family NJR02_03520 PF16200 C-terminal region of band_7 NJR02_03525 PF10414 Sirohaem synthase dimerisation region NJR02_03525 PF14824 Sirohaem biosynthesis protein central NJR02_03525 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NJR02_03530 PF01507 Phosphoadenosine phosphosulfate reductase family NJR02_03535 PF00009 Elongation factor Tu GTP binding domain NJR02_03540 PF03600 Citrate transporter NJR02_03540 PF02080 TrkA-C domain NJR02_03550 PF05598 Transposase domain (DUF772) NJR02_03550 PF01609 Transposase DDE domain NJR02_03555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJR02_03555 PF12729 Four helix bundle sensory module for signal transduction NJR02_03555 PF00672 HAMP domain NJR02_03575 PF00005 ABC transporter NJR02_03590 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) NJR02_03605 PF00719 Inorganic pyrophosphatase NJR02_03610 PF01225 Mur ligase family, catalytic domain NJR02_03610 PF02875 Mur ligase family, glutamate ligase domain NJR02_03610 PF08245 Mur ligase middle domain NJR02_03615 PF02441 Flavoprotein NJR02_03620 PF00440 Bacterial regulatory proteins, tetR family NJR02_03625 PF00156 Phosphoribosyl transferase domain NJR02_03630 PF00005 ABC transporter NJR02_03635 PF01061 ABC-2 type transporter NJR02_03645 PF02569 Pantoate-beta-alanine ligase NJR02_03650 PF02548 Ketopantoate hydroxymethyltransferase NJR02_03655 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NJR02_03660 PF01743 Poly A polymerase head domain NJR02_03660 PF12626 Polymerase A arginine-rich C-terminus NJR02_03660 PF12627 Probable RNA and SrmB- binding site of polymerase A NJR02_03665 PF00749 tRNA synthetases class I (E and Q), catalytic domain NJR02_03670 PF01258 Prokaryotic dksA/traR C4-type zinc finger NJR02_03675 PF17746 SfsA N-terminal OB domain NJR02_03675 PF03749 Sugar fermentation stimulation protein RE domain NJR02_03685 PF04408 Helicase associated domain (HA2) NJR02_03685 PF00271 Helicase conserved C-terminal domain NJR02_03685 PF08482 ATP-dependent helicase C-terminal NJR02_03685 PF00270 DEAD/DEAH box helicase NJR02_03690 PF14814 Bifunctional transglycosylase second domain NJR02_03690 PF00905 Penicillin binding protein transpeptidase domain NJR02_03690 PF00912 Transglycosylase NJR02_03695 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NJR02_03700 PF00893 Small Multidrug Resistance protein NJR02_03705 PF00893 Small Multidrug Resistance protein NJR02_03710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_03710 PF03466 LysR substrate binding domain NJR02_03720 PF01569 PAP2 superfamily NJR02_03735 PF00202 Aminotransferase class-III NJR02_03740 PF00654 Voltage gated chloride channel NJR02_03750 PF01521 Iron-sulphur cluster biosynthesis NJR02_03775 PF01810 LysE type translocator NJR02_03780 PF13356 Arm DNA-binding domain NJR02_03780 PF00589 Phage integrase family NJR02_03835 PF02954 Bacterial regulatory protein, Fis family NJR02_03840 PF01207 Dihydrouridine synthase (Dus) NJR02_03850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NJR02_03880 PF00072 Response regulator receiver domain NJR02_03885 PF00854 POT family NJR02_03890 PF00483 Nucleotidyl transferase NJR02_03900 PF00459 Inositol monophosphatase family NJR02_03905 PF03795 YCII-related domain NJR02_03910 PF04279 Intracellular septation protein A NJR02_03915 PF00282 Pyridoxal-dependent decarboxylase conserved domain NJR02_03920 PF03006 Haemolysin-III related NJR02_03925 PF06826 Predicted Permease Membrane Region NJR02_03925 PF02080 TrkA-C domain NJR02_03935 PF07690 Major Facilitator Superfamily NJR02_03940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_03940 PF03466 LysR substrate binding domain NJR02_03945 PF04151 Bacterial pre-peptidase C-terminal domain NJR02_03945 PF07504 Fungalysin/Thermolysin Propeptide Motif NJR02_03945 PF02868 Thermolysin metallopeptidase, alpha-helical domain NJR02_03945 PF01447 Thermolysin metallopeptidase, catalytic domain NJR02_03945 PF03413 Peptidase propeptide and YPEB domain NJR02_03950 PF13302 Acetyltransferase (GNAT) domain NJR02_03955 PF13302 Acetyltransferase (GNAT) domain NJR02_03965 PF04074 YhcH/YjgK/YiaL NJR02_03970 PF00871 Acetokinase family NJR02_03975 PF00924 Mechanosensitive ion channel NJR02_03980 PF17969 L,D-transpeptidase C-terminal domain NJR02_03980 PF03734 L,D-transpeptidase catalytic domain NJR02_03985 PF00474 Sodium:solute symporter family NJR02_03995 PF13411 MerR HTH family regulatory protein NJR02_04030 PF02525 Flavodoxin-like fold NJR02_04035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_04035 PF03466 LysR substrate binding domain NJR02_04040 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ NJR02_04050 PF12848 ABC transporter NJR02_04050 PF00005 ABC transporter NJR02_04055 PF00478 IMP dehydrogenase / GMP reductase domain NJR02_04055 PF00571 CBS domain NJR02_04060 PF00267 Gram-negative porin NJR02_04065 PF00072 Response regulator receiver domain NJR02_04065 PF01584 CheW-like domain NJR02_04070 PF13472 GDSL-like Lipase/Acylhydrolase family NJR02_04075 PF00005 ABC transporter NJR02_04085 PF08338 Domain of unknown function (DUF1731) NJR02_04085 PF01370 NAD dependent epimerase/dehydratase family NJR02_04090 PF12792 CSS motif domain associated with EAL NJR02_04090 PF00563 EAL domain NJR02_04095 PF00155 Aminotransferase class I and II NJR02_04100 PF02225 PA domain NJR02_04100 PF04389 Peptidase family M28 NJR02_04105 PF02390 Putative methyltransferase NJR02_04110 PF04320 Protein with unknown function (DUF469) NJR02_04115 PF04960 Glutaminase NJR02_04120 PF00581 Rhodanese-like domain NJR02_04125 PF06082 Exopolysaccharide biosynthesis protein YbjH NJR02_04130 PF06251 Capsule biosynthesis GfcC NJR02_04135 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF NJR02_04155 PF06004 Bacterial protein of unknown function (DUF903) NJR02_04160 PF00664 ABC transporter transmembrane region NJR02_04160 PF00005 ABC transporter NJR02_04165 PF00561 alpha/beta hydrolase fold NJR02_04185 PF06877 Regulator of ribonuclease activity B NJR02_04190 PF03707 Bacterial signalling protein N terminal repeat NJR02_04190 PF00563 EAL domain NJR02_04190 PF00990 Diguanylate cyclase, GGDEF domain NJR02_04210 PF09905 DNA-binding protein VF530 NJR02_04215 PF02666 Phosphatidylserine decarboxylase NJR02_04220 PF03193 RsgA GTPase NJR02_04225 PF00929 Exonuclease NJR02_04260 PF00313 'Cold-shock' DNA-binding domain NJR02_04270 PF00672 HAMP domain NJR02_04270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJR02_04275 PF00749 tRNA synthetases class I (E and Q), catalytic domain NJR02_04280 PF00749 tRNA synthetases class I (E and Q), catalytic domain NJR02_04330 PF02472 Biopolymer transport protein ExbD/TolR NJR02_04335 PF01618 MotA/TolQ/ExbB proton channel family NJR02_04340 PF01618 MotA/TolQ/ExbB proton channel family NJR02_04350 PF07715 TonB-dependent Receptor Plug Domain NJR02_04350 PF00593 TonB dependent receptor NJR02_04360 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_04365 PF12911 N-terminal TM domain of oligopeptide transport permease C NJR02_04365 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_04370 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NJR02_04375 PF00005 ABC transporter NJR02_04375 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NJR02_04380 PF00005 ABC transporter NJR02_04380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NJR02_04385 PF07687 Peptidase dimerisation domain NJR02_04385 PF01546 Peptidase family M20/M25/M40 NJR02_04390 PF00156 Phosphoribosyl transferase domain NJR02_04395 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) NJR02_04400 PF07417 Sigma factor-binding transcriptional regulator Crl NJR02_04405 PF00696 Amino acid kinase family NJR02_04405 PF01472 PUA domain NJR02_04410 PF00171 Aldehyde dehydrogenase family NJR02_04420 PF00582 Universal stress protein family NJR02_04435 PF01568 Molydopterin dinucleotide binding domain NJR02_04435 PF00384 Molybdopterin oxidoreductase NJR02_04435 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NJR02_04435 PF04324 BFD-like [2Fe-2S] binding domain NJR02_04440 PF10414 Sirohaem synthase dimerisation region NJR02_04440 PF14824 Sirohaem biosynthesis protein central NJR02_04440 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NJR02_04450 PF00005 ABC transporter NJR02_04455 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_04460 PF00005 ABC transporter NJR02_04465 PF04324 BFD-like [2Fe-2S] binding domain NJR02_04465 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NJR02_04465 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NJR02_04465 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJR02_04465 PF13806 Rieske-like [2Fe-2S] domain NJR02_04465 PF18267 Rubredoxin NAD+ reductase C-terminal domain NJR02_04470 PF13806 Rieske-like [2Fe-2S] domain NJR02_04470 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJR02_04470 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NJR02_04470 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NJR02_04470 PF18267 Rubredoxin NAD+ reductase C-terminal domain NJR02_04470 PF04324 BFD-like [2Fe-2S] binding domain NJR02_04475 PF00294 pfkB family carbohydrate kinase NJR02_04480 PF04227 Indigoidine synthase A like protein NJR02_04485 PF00194 Eukaryotic-type carbonic anhydrase NJR02_04500 PF00994 Probable molybdopterin binding domain NJR02_04510 PF06738 Putative threonine/serine exporter NJR02_04515 PF12821 Threonine/Serine exporter, ThrE NJR02_04520 PF00186 Dihydrofolate reductase NJR02_04525 PF00005 ABC transporter NJR02_04525 PF00571 CBS domain NJR02_04530 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_04535 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NJR02_04540 PF01507 Phosphoadenosine phosphosulfate reductase family NJR02_04545 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NJR02_04545 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NJR02_04550 PF00667 FAD binding domain NJR02_04550 PF00258 Flavodoxin NJR02_04550 PF00175 Oxidoreductase NAD-binding domain NJR02_04555 PF02567 Phenazine biosynthesis-like protein NJR02_04560 PF00152 tRNA synthetases class II (D, K and N) NJR02_04560 PF01336 OB-fold nucleic acid binding domain NJR02_04570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJR02_04570 PF00672 HAMP domain NJR02_04570 PF02743 Cache domain NJR02_04575 PF03616 Sodium/glutamate symporter NJR02_04580 PF00710 Asparaginase, N-terminal NJR02_04580 PF17763 Glutaminase/Asparaginase C-terminal domain NJR02_04585 PF07023 Protein of unknown function (DUF1315) NJR02_04590 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NJR02_04590 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NJR02_04605 PF01343 Peptidase family S49 NJR02_04610 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NJR02_04610 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJR02_04615 PF00881 Nitroreductase family NJR02_04630 PF14602 Hexapeptide repeat of succinyl-transferase NJR02_04630 PF12464 Maltose acetyltransferase NJR02_04640 PF00107 Zinc-binding dehydrogenase NJR02_04640 PF08240 Alcohol dehydrogenase GroES-like domain NJR02_04645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_04645 PF03466 LysR substrate binding domain NJR02_04650 PF00367 phosphotransferase system, EIIB NJR02_04650 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NJR02_04650 PF02378 Phosphotransferase system, EIIC NJR02_04655 PF00474 Sodium:solute symporter family NJR02_04660 PF06196 Protein of unknown function (DUF997) NJR02_04665 PF00289 Biotin carboxylase, N-terminal domain NJR02_04665 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NJR02_04665 PF02785 Biotin carboxylase C-terminal domain NJR02_04670 PF00364 Biotin-requiring enzyme NJR02_04675 PF01220 Dehydroquinase class II NJR02_04680 PF16177 Acetyl-coenzyme A synthetase N-terminus NJR02_04680 PF00501 AMP-binding enzyme NJR02_04680 PF13193 AMP-binding enzyme C-terminal domain NJR02_04685 PF00563 EAL domain NJR02_04685 PF00990 Diguanylate cyclase, GGDEF domain NJR02_04685 PF03707 Bacterial signalling protein N terminal repeat NJR02_04695 PF02613 Nitrate reductase delta subunit NJR02_04705 PF00464 Serine hydroxymethyltransferase NJR02_04715 PF03477 ATP cone domain NJR02_04720 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NJR02_04720 PF01872 RibD C-terminal domain NJR02_04725 PF00677 Lumazine binding domain NJR02_04730 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NJR02_04730 PF00925 GTP cyclohydrolase II NJR02_04735 PF00885 6,7-dimethyl-8-ribityllumazine synthase NJR02_04740 PF01029 NusB family NJR02_04745 PF02769 AIR synthase related protein, C-terminal domain NJR02_04745 PF00586 AIR synthase related protein, N-terminal domain NJR02_04750 PF04608 Phosphatidylglycerophosphatase A NJR02_04755 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NJR02_04755 PF00005 ABC transporter NJR02_04760 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NJR02_04765 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_04770 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_04770 PF12911 N-terminal TM domain of oligopeptide transport permease C NJR02_04775 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NJR02_04775 PF02779 Transketolase, pyrimidine binding domain NJR02_04775 PF02780 Transketolase, C-terminal domain NJR02_04780 PF00348 Polyprenyl synthetase NJR02_04785 PF02609 Exonuclease VII small subunit NJR02_04790 PF01618 MotA/TolQ/ExbB proton channel family NJR02_04795 PF13677 Membrane MotB of proton-channel complex MotA/MotB NJR02_04795 PF00691 OmpA family NJR02_04800 PF01272 Transcription elongation factor, GreA/GreB, C-term NJR02_04800 PF03449 Transcription elongation factor, N-terminal NJR02_04810 PF01985 CRS1 / YhbY (CRM) domain NJR02_04815 PF01728 FtsJ-like methyltransferase NJR02_04820 PF01434 Peptidase family M41 NJR02_04820 PF17862 AAA+ lid domain NJR02_04820 PF06480 FtsH Extracellular NJR02_04820 PF00004 ATPase family associated with various cellular activities (AAA) NJR02_04825 PF00809 Pterin binding enzyme NJR02_04830 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NJR02_04830 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NJR02_04830 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NJR02_04830 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NJR02_04835 PF00121 Triosephosphate isomerase NJR02_04840 PF03840 Preprotein translocase SecG subunit NJR02_04855 PF02576 RimP N-terminal domain NJR02_04855 PF17384 RimP C-terminal SH3 domain NJR02_04860 PF00575 S1 RNA binding domain NJR02_04860 PF13184 NusA-like KH domain NJR02_04860 PF08529 NusA N-terminal domain NJR02_04865 PF00009 Elongation factor Tu GTP binding domain NJR02_04865 PF08364 Bacterial translation initiation factor IF-2 associated region NJR02_04865 PF04760 Translation initiation factor IF-2, N-terminal region NJR02_04865 PF11987 Translation-initiation factor 2 NJR02_04870 PF02033 Ribosome-binding factor A NJR02_04875 PF09157 Pseudouridine synthase II TruB, C-terminal NJR02_04875 PF16198 tRNA pseudouridylate synthase B C-terminal domain NJR02_04875 PF01509 TruB family pseudouridylate synthase (N terminal domain) NJR02_04880 PF00312 Ribosomal protein S15 NJR02_04885 PF03725 3' exoribonuclease family, domain 2 NJR02_04885 PF00575 S1 RNA binding domain NJR02_04885 PF01138 3' exoribonuclease family, domain 1 NJR02_04885 PF00013 KH domain NJR02_04885 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NJR02_04890 PF07690 Major Facilitator Superfamily NJR02_04895 PF02635 DsrE/DsrF-like family NJR02_04900 PF06476 Protein of unknown function (DUF1090) NJR02_04910 PF12838 4Fe-4S dicluster domain NJR02_04915 PF01136 Peptidase family U32 NJR02_04915 PF16325 Peptidase family U32 C-terminal domain NJR02_04920 PF03734 L,D-transpeptidase catalytic domain NJR02_04920 PF17969 L,D-transpeptidase C-terminal domain NJR02_04930 PF01523 Putative modulator of DNA gyrase NJR02_04935 PF01523 Putative modulator of DNA gyrase NJR02_04940 PF00258 Flavodoxin NJR02_04945 PF02899 Phage integrase, N-terminal SAM-like domain NJR02_04945 PF00589 Phage integrase family NJR02_04950 PF01741 Large-conductance mechanosensitive channel, MscL NJR02_04960 PF01368 DHH family NJR02_04960 PF02272 DHHA1 domain NJR02_04960 PF17768 RecJ OB domain NJR02_04965 PF13411 MerR HTH family regulatory protein NJR02_04980 PF02508 Rnf-Nqr subunit, membrane protein NJR02_04990 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family NJR02_04990 PF04055 Radical SAM superfamily NJR02_04995 PF03099 Biotin/lipoate A/B protein ligase family NJR02_05000 PF04359 Protein of unknown function (DUF493) NJR02_05005 PF07943 Penicillin-binding protein 5, C-terminal domain NJR02_05005 PF00768 D-alanyl-D-alanine carboxypeptidase NJR02_05010 PF03330 Lytic transglycolase NJR02_05010 PF05036 Sporulation related domain NJR02_05015 PF13406 Transglycosylase SLT domain NJR02_05020 PF01098 Cell cycle protein NJR02_05025 PF03717 Penicillin-binding Protein dimerisation domain NJR02_05025 PF00905 Penicillin binding protein transpeptidase domain NJR02_05030 PF02590 Predicted SPOUT methyltransferase NJR02_05040 PF01467 Cytidylyltransferase-like NJR02_05055 PF00133 tRNA synthetases class I (I, L, M and V) NJR02_05055 PF08264 Anticodon-binding domain of tRNA NJR02_05055 PF13603 Leucyl-tRNA synthetase, Domain 2 NJR02_05060 PF07295 Zinc-ribbon containing domain NJR02_05065 PF00795 Carbon-nitrogen hydrolase NJR02_05070 PF00571 CBS domain NJR02_05070 PF03471 Transporter associated domain NJR02_05075 PF02130 Uncharacterized protein family UPF0054 NJR02_05080 PF02562 PhoH-like protein NJR02_05085 PF04055 Radical SAM superfamily NJR02_05085 PF01938 TRAM domain NJR02_05085 PF00919 Uncharacterized protein family UPF0004 NJR02_05090 PF01494 FAD binding domain NJR02_05095 PF00857 Isochorismatase family NJR02_05100 PF00313 'Cold-shock' DNA-binding domain NJR02_05105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_05105 PF03466 LysR substrate binding domain NJR02_05115 PF13419 Haloacid dehalogenase-like hydrolase NJR02_05120 PF00990 Diguanylate cyclase, GGDEF domain NJR02_05130 PF17152 Periplasmic sensor domain NJR02_05130 PF00990 Diguanylate cyclase, GGDEF domain NJR02_05140 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NJR02_05140 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NJR02_05150 PF03171 2OG-Fe(II) oxygenase superfamily NJR02_05150 PF14226 non-haem dioxygenase in morphine synthesis N-terminal NJR02_05165 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_05170 PF09285 Elongation factor P, C-terminal NJR02_05170 PF08207 Elongation factor P (EF-P) KOW-like domain NJR02_05170 PF01132 Elongation factor P (EF-P) OB domain NJR02_05180 PF00478 IMP dehydrogenase / GMP reductase domain NJR02_05185 PF08443 RimK-like ATP-grasp domain NJR02_05185 PF18030 RimK PreATP-grasp domain NJR02_05190 PF08521 Two-component sensor kinase N-terminal NJR02_05190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_05190 PF00512 His Kinase A (phospho-acceptor) domain NJR02_05195 PF00486 Transcriptional regulatory protein, C terminal NJR02_05195 PF00072 Response regulator receiver domain NJR02_05205 PF00106 short chain dehydrogenase NJR02_05215 PF00501 AMP-binding enzyme NJR02_05225 PF13847 Methyltransferase domain NJR02_05230 PF06224 Winged helix DNA-binding domain NJR02_05245 PF02313 Fumarate reductase subunit D NJR02_05250 PF02300 Fumarate reductase subunit C NJR02_05255 PF13085 2Fe-2S iron-sulfur cluster binding domain NJR02_05255 PF13183 4Fe-4S dicluster domain NJR02_05260 PF02910 Fumarate reductase flavoprotein C-term NJR02_05260 PF00890 FAD binding domain NJR02_05265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJR02_05265 PF00672 HAMP domain NJR02_05265 PF02743 Cache domain NJR02_05270 PF03009 Glycerophosphoryl diester phosphodiesterase family NJR02_05275 PF00924 Mechanosensitive ion channel NJR02_05275 PF12794 Mechanosensitive ion channel inner membrane domain 1 NJR02_05275 PF12795 Mechanosensitive ion channel porin domain NJR02_05285 PF08525 Opacity-associated protein A N-terminal motif NJR02_05285 PF01551 Peptidase family M23 NJR02_05285 PF01476 LysM domain NJR02_05300 PF03466 LysR substrate binding domain NJR02_05300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_05315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_05315 PF03466 LysR substrate binding domain NJR02_05320 PF00912 Transglycosylase NJR02_05320 PF00905 Penicillin binding protein transpeptidase domain NJR02_05320 PF17092 Penicillin-binding protein OB-like domain NJR02_05325 PF11104 Type IV pilus assembly protein PilM; NJR02_05335 PF04350 Pilus assembly protein, PilO NJR02_05345 PF07660 Secretin and TonB N terminus short domain NJR02_05345 PF11741 AMIN domain NJR02_05345 PF00263 Bacterial type II and III secretion system protein NJR02_05345 PF03958 Bacterial type II/III secretion system short domain NJR02_05350 PF01202 Shikimate kinase NJR02_05355 PF01761 3-dehydroquinate synthase NJR02_05360 PF05036 Sporulation related domain NJR02_05365 PF02086 D12 class N6 adenine-specific DNA methyltransferase NJR02_05370 PF00834 Ribulose-phosphate 3 epimerase family NJR02_05375 PF13419 Haloacid dehalogenase-like hydrolase NJR02_05380 PF00579 tRNA synthetases class I (W and Y) NJR02_05390 PF00117 Glutamine amidotransferase class-I NJR02_05395 PF00202 Aminotransferase class-III NJR02_05400 PF04958 Arginine N-succinyltransferase beta subunit NJR02_05405 PF00171 Aldehyde dehydrogenase family NJR02_05420 PF13419 Haloacid dehalogenase-like hydrolase NJR02_05425 PF07690 Major Facilitator Superfamily NJR02_05440 PF07859 alpha/beta hydrolase fold NJR02_05445 PF04266 ASCH domain NJR02_05450 PF03600 Citrate transporter NJR02_05450 PF02080 TrkA-C domain NJR02_05495 PF01926 50S ribosome-binding GTPase NJR02_05495 PF06071 Protein of unknown function (DUF933) NJR02_05500 PF01195 Peptidyl-tRNA hydrolase NJR02_05505 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NJR02_05505 PF14572 Phosphoribosyl synthetase-associated domain NJR02_05515 PF00288 GHMP kinases N terminal domain NJR02_05515 PF08544 GHMP kinases C terminal NJR02_05520 PF03550 Outer membrane lipoprotein LolB NJR02_05525 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NJR02_05525 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NJR02_05525 PF01488 Shikimate / quinate 5-dehydrogenase NJR02_05530 PF03462 PCRF domain NJR02_05530 PF00472 RF-1 domain NJR02_05535 PF13847 Methyltransferase domain NJR02_05535 PF17827 PrmC N-terminal domain NJR02_05545 PF13369 Transglutaminase-like superfamily NJR02_05550 PF00793 DAHP synthetase I family NJR02_05555 PF00375 Sodium:dicarboxylate symporter family NJR02_05560 PF01228 Glycine radical NJR02_05565 PF03167 Uracil DNA glycosylase superfamily NJR02_05580 PF00923 Transaldolase/Fructose-6-phosphate aldolase NJR02_05585 PF01235 Sodium:alanine symporter family NJR02_05590 PF00144 Beta-lactamase NJR02_05595 PF07690 Major Facilitator Superfamily NJR02_05600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_05600 PF03466 LysR substrate binding domain NJR02_05605 PF03652 Holliday junction resolvase NJR02_05610 PF02622 Uncharacterized ACR, COG1678 NJR02_05615 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain NJR02_05615 PF02951 Prokaryotic glutathione synthetase, N-terminal domain NJR02_05620 PF04452 RNA methyltransferase NJR02_05625 PF04231 Endonuclease I NJR02_05630 PF10263 SprT-like family NJR02_05630 PF17283 SprT-like zinc ribbon domain NJR02_05635 PF02772 S-adenosylmethionine synthetase, central domain NJR02_05635 PF00438 S-adenosylmethionine synthetase, N-terminal domain NJR02_05635 PF02773 S-adenosylmethionine synthetase, C-terminal domain NJR02_05640 PF00456 Transketolase, thiamine diphosphate binding domain NJR02_05640 PF02779 Transketolase, pyrimidine binding domain NJR02_05640 PF02780 Transketolase, C-terminal domain NJR02_05650 PF01042 Endoribonuclease L-PSP NJR02_05665 PF03702 Anhydro-N-acetylmuramic acid kinase NJR02_05670 PF01476 LysM domain NJR02_05670 PF01551 Peptidase family M23 NJR02_05670 PF08525 Opacity-associated protein A N-terminal motif NJR02_05675 PF00579 tRNA synthetases class I (W and Y) NJR02_05680 PF01204 Trehalase NJR02_05690 PF01161 Phosphatidylethanolamine-binding protein NJR02_05695 PF00709 Adenylosuccinate synthetase NJR02_05700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_05700 PF03466 LysR substrate binding domain NJR02_05710 PF00155 Aminotransferase class I and II NJR02_05715 PF07690 Major Facilitator Superfamily NJR02_05720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_05720 PF03466 LysR substrate binding domain NJR02_05725 PF00106 short chain dehydrogenase NJR02_05730 PF01343 Peptidase family S49 NJR02_05730 PF08496 Peptidase family S49 N-terminal NJR02_05735 PF04996 Succinylarginine dihydrolase NJR02_05740 PF01396 Topoisomerase DNA binding C4 zinc finger NJR02_05740 PF08272 Topoisomerase I zinc-ribbon-like NJR02_05740 PF01131 DNA topoisomerase NJR02_05740 PF01751 Toprim domain NJR02_05755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJR02_05755 PF00672 HAMP domain NJR02_05755 PF12729 Four helix bundle sensory module for signal transduction NJR02_05760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJR02_05760 PF08447 PAS fold NJR02_05765 PF00728 Glycosyl hydrolase family 20, catalytic domain NJR02_05765 PF02838 Glycosyl hydrolase family 20, domain 2 NJR02_05770 PF01869 BadF/BadG/BcrA/BcrD ATPase family NJR02_05780 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NJR02_05780 PF00005 ABC transporter NJR02_05785 PF00005 ABC transporter NJR02_05785 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NJR02_05790 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_05790 PF12911 N-terminal TM domain of oligopeptide transport permease C NJR02_05795 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_05800 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NJR02_05805 PF04055 Radical SAM superfamily NJR02_05805 PF18693 TRAM domain NJR02_05805 PF00919 Uncharacterized protein family UPF0004 NJR02_05810 PF01548 Transposase NJR02_05810 PF02371 Transposase IS116/IS110/IS902 family NJR02_05820 PF07690 Major Facilitator Superfamily NJR02_05825 PF12833 Helix-turn-helix domain NJR02_05830 PF00816 H-NS histone family NJR02_05840 PF09722 Protein of unknown function (DUF2384) NJR02_05845 PF02321 Outer membrane efflux protein NJR02_05850 PF00873 AcrB/AcrD/AcrF family NJR02_05855 PF00529 HlyD membrane-fusion protein of T1SS NJR02_05855 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NJR02_05865 PF00072 Response regulator receiver domain NJR02_05865 PF00486 Transcriptional regulatory protein, C terminal NJR02_05870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_05870 PF00672 HAMP domain NJR02_05870 PF00512 His Kinase A (phospho-acceptor) domain NJR02_05880 PF13411 MerR HTH family regulatory protein NJR02_05890 PF01252 Signal peptidase (SPase) II NJR02_05925 PF00072 Response regulator receiver domain NJR02_05930 PF01022 Bacterial regulatory protein, arsR family NJR02_05935 PF01758 Sodium Bile acid symporter family NJR02_05940 PF03960 ArsC family NJR02_05950 PF02049 Flagellar hook-basal body complex protein FliE NJR02_05955 PF08345 Flagellar M-ring protein C-terminal NJR02_05955 PF01514 Secretory protein of YscJ/FliF family NJR02_05960 PF01706 FliG C-terminal domain NJR02_05960 PF14842 FliG N-terminal domain NJR02_05960 PF14841 FliG middle domain NJR02_05970 PF18269 T3SS EscN ATPase C-terminal domain NJR02_05970 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NJR02_05990 PF02154 Flagellar motor switch protein FliM NJR02_05990 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NJR02_05995 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NJR02_06000 PF04347 Flagellar biosynthesis protein, FliO NJR02_06005 PF00813 FliP family NJR02_06010 PF01313 Bacterial export proteins, family 3 NJR02_06015 PF01311 Bacterial export proteins, family 1 NJR02_06020 PF01312 FlhB HrpN YscU SpaS Family NJR02_06025 PF00771 FHIPEP family NJR02_06030 PF00448 SRP54-type protein, GTPase domain NJR02_06035 PF10609 NUBPL iron-transfer P-loop NTPase NJR02_06040 PF04539 Sigma-70 region 3 NJR02_06040 PF04542 Sigma-70 region 2 NJR02_06040 PF04545 Sigma-70, region 4 NJR02_06045 PF00072 Response regulator receiver domain NJR02_06050 PF04344 Chemotaxis phosphatase, CheZ NJR02_06055 PF01627 Hpt domain NJR02_06055 PF00072 Response regulator receiver domain NJR02_06055 PF02895 Signal transducing histidine kinase, homodimeric domain NJR02_06055 PF01584 CheW-like domain NJR02_06055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_06060 PF01339 CheB methylesterase NJR02_06060 PF00072 Response regulator receiver domain NJR02_06065 PF01618 MotA/TolQ/ExbB proton channel family NJR02_06070 PF13677 Membrane MotB of proton-channel complex MotA/MotB NJR02_06070 PF00691 OmpA family NJR02_06075 PF13614 AAA domain NJR02_06085 PF01584 CheW-like domain NJR02_06095 PF00005 ABC transporter NJR02_06100 PF03379 CcmB protein NJR02_06105 PF01578 Cytochrome C assembly protein NJR02_06110 PF04995 Heme exporter protein D (CcmD) NJR02_06115 PF03100 CcmE NJR02_06120 PF01578 Cytochrome C assembly protein NJR02_06120 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal NJR02_06125 PF08534 Redoxin NJR02_06130 PF03918 Cytochrome C biogenesis protein NJR02_06140 PF04333 MlaA lipoprotein NJR02_06145 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NJR02_06145 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NJR02_06150 PF00462 Glutaredoxin NJR02_06155 PF01189 16S rRNA methyltransferase RsmB/F NJR02_06155 PF01029 NusB family NJR02_06170 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region NJR02_06170 PF01243 Pyridoxamine 5'-phosphate oxidase NJR02_06175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_06175 PF03466 LysR substrate binding domain NJR02_06180 PF01546 Peptidase family M20/M25/M40 NJR02_06200 PF13508 Acetyltransferase (GNAT) domain NJR02_06215 PF01081 KDPG and KHG aldolase NJR02_06240 PF05598 Transposase domain (DUF772) NJR02_06240 PF01609 Transposase DDE domain NJR02_06265 PF01434 Peptidase family M41 NJR02_06265 PF17862 AAA+ lid domain NJR02_06265 PF00004 ATPase family associated with various cellular activities (AAA) NJR02_06275 PF01609 Transposase DDE domain NJR02_06280 PF00144 Beta-lactamase NJR02_06285 PF01609 Transposase DDE domain NJR02_06305 PF05598 Transposase domain (DUF772) NJR02_06305 PF01609 Transposase DDE domain NJR02_06335 PF00176 SNF2 family N-terminal domain NJR02_06335 PF00271 Helicase conserved C-terminal domain NJR02_06340 PF02661 Fic/DOC family NJR02_06345 PF00665 Integrase core domain NJR02_06350 PF01695 IstB-like ATP binding protein NJR02_06355 PF01609 Transposase DDE domain NJR02_06355 PF05598 Transposase domain (DUF772) NJR02_06360 PF13356 Arm DNA-binding domain NJR02_06360 PF00589 Phage integrase family NJR02_06370 PF01668 SmpB protein NJR02_06375 PF03364 Polyketide cyclase / dehydrase and lipid transport NJR02_06380 PF03658 RnfH family Ubiquitin NJR02_06385 PF13460 NAD(P)H-binding NJR02_06390 PF04355 SmpA / OmlA family NJR02_06395 PF00465 Iron-containing alcohol dehydrogenase NJR02_06400 PF01048 Phosphorylase superfamily NJR02_06405 PF00849 RNA pseudouridylate synthase NJR02_06410 PF01156 Inosine-uridine preferring nucleoside hydrolase NJR02_06425 PF07509 Protein of unknown function (DUF1523) NJR02_06430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJR02_06430 PF00672 HAMP domain NJR02_06435 PF01810 LysE type translocator NJR02_06445 PF03471 Transporter associated domain NJR02_06445 PF00999 Sodium/hydrogen exchanger family NJR02_06445 PF02080 TrkA-C domain NJR02_06455 PF02557 D-alanyl-D-alanine carboxypeptidase NJR02_06460 PF07687 Peptidase dimerisation domain NJR02_06460 PF01546 Peptidase family M20/M25/M40 NJR02_06465 PF03960 ArsC family NJR02_06470 PF00239 Resolvase, N terminal domain NJR02_06470 PF13408 Recombinase zinc beta ribbon domain NJR02_06470 PF07508 Recombinase NJR02_06480 PF02796 Helix-turn-helix domain of resolvase NJR02_06480 PF00239 Resolvase, N terminal domain NJR02_06490 PF05598 Transposase domain (DUF772) NJR02_06490 PF01609 Transposase DDE domain NJR02_06500 PF01609 Transposase DDE domain NJR02_06500 PF05598 Transposase domain (DUF772) NJR02_06515 PF07687 Peptidase dimerisation domain NJR02_06515 PF01546 Peptidase family M20/M25/M40 NJR02_06525 PF03605 Anaerobic c4-dicarboxylate membrane transporter NJR02_06530 PF00152 tRNA synthetases class II (D, K and N) NJR02_06530 PF01336 OB-fold nucleic acid binding domain NJR02_06545 PF00202 Aminotransferase class-III NJR02_06550 PF06968 Biotin and Thiamin Synthesis associated domain NJR02_06550 PF04055 Radical SAM superfamily NJR02_06555 PF00155 Aminotransferase class I and II NJR02_06560 PF12697 Alpha/beta hydrolase family NJR02_06560 PF08241 Methyltransferase domain NJR02_06570 PF01435 Peptidase family M48 NJR02_06575 PF00111 2Fe-2S iron-sulfur cluster binding domain NJR02_06575 PF03473 MOSC domain NJR02_06575 PF03476 MOSC N-terminal beta barrel domain NJR02_06575 PF00111 2Fe-2S iron-sulfur cluster binding domain NJR02_06575 PF03473 MOSC domain NJR02_06575 PF03476 MOSC N-terminal beta barrel domain NJR02_06580 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NJR02_06580 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJR02_06580 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NJR02_06585 PF10371 Domain of unknown function NJR02_06585 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II NJR02_06585 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase NJR02_06585 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg NJR02_06585 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NJR02_06590 PF04325 Protein of unknown function (DUF465) NJR02_06600 PF01554 MatE NJR02_06620 PF00291 Pyridoxal-phosphate dependent enzyme NJR02_06625 PF00465 Iron-containing alcohol dehydrogenase NJR02_06635 PF00440 Bacterial regulatory proteins, tetR family NJR02_06635 PF08359 YsiA-like protein, C-terminal region NJR02_06640 PF00171 Aldehyde dehydrogenase family NJR02_06650 PF00877 NlpC/P60 family NJR02_06655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_06655 PF03466 LysR substrate binding domain NJR02_06675 PF08003 Protein of unknown function (DUF1698) NJR02_06680 PF13649 Methyltransferase domain NJR02_06685 PF01904 Protein of unknown function DUF72 NJR02_06690 PF02938 GAD domain NJR02_06690 PF00152 tRNA synthetases class II (D, K and N) NJR02_06690 PF01336 OB-fold nucleic acid binding domain NJR02_06695 PF01709 Transcriptional regulator NJR02_06700 PF00884 Sulfatase NJR02_06700 PF08019 Phosphoethanolamine transferase EptA/EptB NJR02_06705 PF01047 MarR family NJR02_06705 PF00480 ROK family NJR02_06710 PF01979 Amidohydrolase family NJR02_06715 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NJR02_06720 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NJR02_06720 PF00367 phosphotransferase system, EIIB NJR02_06720 PF02378 Phosphotransferase system, EIIC NJR02_06725 PF03173 Putative carbohydrate binding domain NJR02_06725 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain NJR02_06725 PF00728 Glycosyl hydrolase family 20, catalytic domain NJR02_06725 PF02838 Glycosyl hydrolase family 20, domain 2 NJR02_06730 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain NJR02_06730 PF00749 tRNA synthetases class I (E and Q), catalytic domain NJR02_06735 PF01475 Ferric uptake regulator family NJR02_06745 PF00258 Flavodoxin NJR02_06750 PF01402 Ribbon-helix-helix protein, copG family NJR02_06760 PF12697 Alpha/beta hydrolase family NJR02_06765 PF03925 SeqA protein C-terminal domain NJR02_06765 PF17206 SeqA protein N-terminal domain NJR02_06770 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NJR02_06770 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NJR02_06770 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NJR02_06770 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NJR02_06780 PF01047 MarR family NJR02_06785 PF13406 Transglycosylase SLT domain NJR02_06790 PF01066 CDP-alcohol phosphatidyltransferase NJR02_06795 PF00005 ABC transporter NJR02_06805 PF13416 Bacterial extracellular solute-binding protein NJR02_06810 PF00403 Heavy-metal-associated domain NJR02_06810 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJR02_06810 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NJR02_06815 PF02627 Carboxymuconolactone decarboxylase family NJR02_06835 PF17243 POTRA domain TamA domain 1 NJR02_06835 PF01103 Surface antigen NJR02_06835 PF07244 Surface antigen variable number repeat NJR02_06840 PF04357 TamB, inner membrane protein subunit of TAM complex NJR02_06860 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NJR02_06865 PF00990 Diguanylate cyclase, GGDEF domain NJR02_06865 PF00563 EAL domain NJR02_06865 PF03707 Bacterial signalling protein N terminal repeat NJR02_06870 PF01464 Transglycosylase SLT domain NJR02_06870 PF14718 Soluble lytic murein transglycosylase L domain NJR02_06875 PF00356 Bacterial regulatory proteins, lacI family NJR02_06885 PF03061 Thioesterase superfamily NJR02_06895 PF03372 Endonuclease/Exonuclease/phosphatase family NJR02_06900 PF01476 LysM domain NJR02_06900 PF01464 Transglycosylase SLT domain NJR02_06910 PF16123 Hydroxyacylglutathione hydrolase C-terminus NJR02_06910 PF00753 Metallo-beta-lactamase superfamily NJR02_06915 PF08241 Methyltransferase domain NJR02_06920 PF00075 RNase H NJR02_06925 PF00929 Exonuclease NJR02_06935 PF11849 Domain of unknown function (DUF3369) NJR02_06940 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NJR02_06940 PF09317 Domain of unknown function (DUF1974) NJR02_06940 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NJR02_06940 PF02770 Acyl-CoA dehydrogenase, middle domain NJR02_06945 PF13580 SIS domain NJR02_06950 PF13230 Glutamine amidotransferases class-II NJR02_06960 PF01933 Uncharacterised protein family UPF0052 NJR02_06970 PF09456 RcsC Alpha-Beta-Loop (ABL) NJR02_06970 PF00072 Response regulator receiver domain NJR02_06970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_06970 PF00512 His Kinase A (phospho-acceptor) domain NJR02_06985 PF00196 Bacterial regulatory proteins, luxR family NJR02_06985 PF00072 Response regulator receiver domain NJR02_06990 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term NJR02_06990 PF00672 HAMP domain NJR02_06990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_06990 PF07730 Histidine kinase NJR02_06995 PF04055 Radical SAM superfamily NJR02_06995 PF06463 Molybdenum Cofactor Synthesis C NJR02_07000 PF12800 4Fe-4S binding domain NJR02_07000 PF00037 4Fe-4S binding domain NJR02_07000 PF13187 4Fe-4S dicluster domain NJR02_07010 PF10518 TAT (twin-arginine translocation) pathway signal sequence NJR02_07010 PF01568 Molydopterin dinucleotide binding domain NJR02_07010 PF00384 Molybdopterin oxidoreductase NJR02_07010 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NJR02_07015 PF12800 4Fe-4S binding domain NJR02_07015 PF12838 4Fe-4S dicluster domain NJR02_07020 PF12801 4Fe-4S binding domain NJR02_07020 PF13237 4Fe-4S dicluster domain NJR02_07025 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) NJR02_07030 PF03264 NapC/NirT cytochrome c family, N-terminal region NJR02_07035 PF00994 Probable molybdopterin binding domain NJR02_07040 PF01967 MoaC family NJR02_07045 PF02597 ThiS family NJR02_07050 PF02391 MoaE protein NJR02_07060 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_07065 PF03459 TOBE domain NJR02_07065 PF00005 ABC transporter NJR02_07070 PF12697 Alpha/beta hydrolase family NJR02_07075 PF06406 StbA protein NJR02_07085 PF00899 ThiF family NJR02_07090 PF00994 Probable molybdopterin binding domain NJR02_07090 PF03454 MoeA C-terminal region (domain IV) NJR02_07090 PF03453 MoeA N-terminal region (domain I and II) NJR02_07095 PF01227 GTP cyclohydrolase I NJR02_07100 PF17200 Single Cache domain 2 NJR02_07100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJR02_07100 PF00672 HAMP domain NJR02_07105 PF01268 Formate--tetrahydrofolate ligase NJR02_07115 PF03466 LysR substrate binding domain NJR02_07115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_07120 PF04264 YceI-like domain NJR02_07130 PF05221 S-adenosyl-L-homocysteine hydrolase NJR02_07130 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NJR02_07145 PF07687 Peptidase dimerisation domain NJR02_07145 PF01546 Peptidase family M20/M25/M40 NJR02_07150 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NJR02_07150 PF17944 Arginine decarboxylase C-terminal helical extension NJR02_07150 PF17810 Arginine decarboxylase helical bundle domain NJR02_07165 PF03707 Bacterial signalling protein N terminal repeat NJR02_07165 PF00990 Diguanylate cyclase, GGDEF domain NJR02_07165 PF00563 EAL domain NJR02_07170 PF00300 Histidine phosphatase superfamily (branch 1) NJR02_07180 PF05598 Transposase domain (DUF772) NJR02_07180 PF01609 Transposase DDE domain NJR02_07200 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NJR02_07200 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NJR02_07205 PF01479 S4 domain NJR02_07205 PF00849 RNA pseudouridylate synthase NJR02_07210 PF07690 Major Facilitator Superfamily NJR02_07220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_07220 PF03466 LysR substrate binding domain NJR02_07230 PF10689 Protein of unknown function (DUF2496) NJR02_07235 PF03061 Thioesterase superfamily NJR02_07240 PF04391 Protein of unknown function (DUF533) NJR02_07250 PF00155 Aminotransferase class I and II NJR02_07250 PF00392 Bacterial regulatory proteins, gntR family NJR02_07255 PF01654 Cytochrome bd terminal oxidase subunit I NJR02_07260 PF02322 Cytochrome bd terminal oxidase subunit II NJR02_07270 PF07690 Major Facilitator Superfamily NJR02_07275 PF00248 Aldo/keto reductase family NJR02_07285 PF05598 Transposase domain (DUF772) NJR02_07285 PF01609 Transposase DDE domain NJR02_07300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_07300 PF03466 LysR substrate binding domain NJR02_07305 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NJR02_07305 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NJR02_07310 PF00230 Major intrinsic protein NJR02_07315 PF07690 Major Facilitator Superfamily NJR02_07320 PF00455 DeoR C terminal sensor domain NJR02_07320 PF08220 DeoR-like helix-turn-helix domain NJR02_07325 PF01266 FAD dependent oxidoreductase NJR02_07325 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NJR02_07330 PF03009 Glycerophosphoryl diester phosphodiesterase family NJR02_07335 PF00793 DAHP synthetase I family NJR02_07340 PF01817 Chorismate mutase type II NJR02_07340 PF02153 Prephenate dehydrogenase NJR02_07345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_07345 PF03466 LysR substrate binding domain NJR02_07350 PF04219 Protein of unknown function, DUF NJR02_07355 PF03974 Ecotin NJR02_07375 PF00326 Prolyl oligopeptidase family NJR02_07375 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NJR02_07380 PF07715 TonB-dependent Receptor Plug Domain NJR02_07380 PF00593 TonB dependent receptor NJR02_07385 PF11893 Domain of unknown function (DUF3413) NJR02_07385 PF00884 Sulfatase NJR02_07390 PF07208 Protein of unknown function (DUF1414) NJR02_07395 PF04245 37-kD nucleoid-associated bacterial protein NJR02_07400 PF01547 Bacterial extracellular solute-binding protein NJR02_07405 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_07405 PF14785 Maltose transport system permease protein MalF P2 domain NJR02_07410 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_07415 PF00005 ABC transporter NJR02_07415 PF08402 TOBE domain NJR02_07420 PF03976 Polyphosphate kinase 2 (PPK2) NJR02_07425 PF00561 alpha/beta hydrolase fold NJR02_07435 PF01594 AI-2E family transporter NJR02_07440 PF01206 Sulfurtransferase TusA NJR02_07445 PF01435 Peptidase family M48 NJR02_07445 PF13181 Tetratricopeptide repeat NJR02_07450 PF00578 AhpC/TSA family NJR02_07455 PF03960 ArsC family NJR02_07470 PF04336 Acyl carrier protein phosphodiesterase NJR02_07480 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJR02_07485 PF01979 Amidohydrolase family NJR02_07490 PF03956 Lysine exporter LysO NJR02_07495 PF00005 ABC transporter NJR02_07500 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJR02_07505 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_07510 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_07520 PF04055 Radical SAM superfamily NJR02_07525 PF03707 Bacterial signalling protein N terminal repeat NJR02_07525 PF00563 EAL domain NJR02_07525 PF00990 Diguanylate cyclase, GGDEF domain NJR02_07530 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJR02_07530 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NJR02_07545 PF00529 HlyD membrane-fusion protein of T1SS NJR02_07545 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NJR02_07550 PF02321 Outer membrane efflux protein NJR02_07555 PF01594 AI-2E family transporter NJR02_07560 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain NJR02_07560 PF01835 MG2 domain NJR02_07560 PF17962 Bacterial macroglobulin domain 6 NJR02_07560 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain NJR02_07560 PF00207 Alpha-2-macroglobulin family NJR02_07560 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain NJR02_07560 PF07703 Alpha-2-macroglobulin bait region domain NJR02_07560 PF07678 A-macroglobulin TED domain NJR02_07560 PF11974 Bacterial alpha-2-macroglobulin MG3 domain NJR02_07565 PF00912 Transglycosylase NJR02_07565 PF00905 Penicillin binding protein transpeptidase domain NJR02_07565 PF06832 Penicillin-Binding Protein C-terminus Family NJR02_07575 PF02926 THUMP domain NJR02_07575 PF02568 Thiamine biosynthesis protein (ThiI) NJR02_07585 PF03458 UPF0126 domain NJR02_07590 PF00700 Bacterial flagellin C-terminal helical region NJR02_07590 PF00669 Bacterial flagellin N-terminal helical region NJR02_07595 PF00700 Bacterial flagellin C-terminal helical region NJR02_07595 PF07196 Flagellin hook IN motif NJR02_07595 PF00669 Bacterial flagellin N-terminal helical region NJR02_07600 PF03646 FlaG protein NJR02_07605 PF07196 Flagellin hook IN motif NJR02_07605 PF07195 Flagellar hook-associated protein 2 C-terminus NJR02_07605 PF02465 Flagellar hook-associated protein 2 N-terminus NJR02_07610 PF02561 Flagellar protein FliS NJR02_07630 PF08666 SAF domain NJR02_07630 PF03102 NeuB family NJR02_07645 PF00202 Aminotransferase class-III NJR02_07650 PF02348 Cytidylyltransferase NJR02_07660 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NJR02_07665 PF02719 Polysaccharide biosynthesis protein NJR02_07670 PF01497 Periplasmic binding protein NJR02_07680 PF01048 Phosphorylase superfamily NJR02_07690 PF02535 ZIP Zinc transporter NJR02_07695 PF00672 HAMP domain NJR02_07695 PF12729 Four helix bundle sensory module for signal transduction NJR02_07695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJR02_07700 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NJR02_07705 PF00730 HhH-GPD superfamily base excision DNA repair protein NJR02_07705 PF10576 Iron-sulfur binding domain of endonuclease III NJR02_07705 PF00633 Helix-hairpin-helix motif NJR02_07710 PF02508 Rnf-Nqr subunit, membrane protein NJR02_07715 PF04205 FMN-binding domain NJR02_07720 PF03116 NQR2, RnfD, RnfE family NJR02_07725 PF13375 RnfC Barrel sandwich hybrid domain NJR02_07725 PF10531 SLBB domain NJR02_07725 PF12838 4Fe-4S dicluster domain NJR02_07725 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NJR02_07730 PF04060 Putative Fe-S cluster NJR02_07735 PF02508 Rnf-Nqr subunit, membrane protein NJR02_07740 PF00892 EamA-like transporter family NJR02_07765 PF07055 Enoyl reductase FAD binding domain NJR02_07765 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NJR02_07765 PF12241 Trans-2-enoyl-CoA reductase catalytic region NJR02_07770 PF03606 C4-dicarboxylate anaerobic carrier NJR02_07775 PF00155 Aminotransferase class I and II NJR02_07785 PF00462 Glutaredoxin NJR02_07790 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family NJR02_07795 PF00271 Helicase conserved C-terminal domain NJR02_07795 PF04851 Type III restriction enzyme, res subunit NJR02_07800 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NJR02_07800 PF00529 HlyD membrane-fusion protein of T1SS NJR02_07805 PF11742 Protein of unknown function (DUF3302) NJR02_07810 PF12795 Mechanosensitive ion channel porin domain NJR02_07810 PF12794 Mechanosensitive ion channel inner membrane domain 1 NJR02_07810 PF00924 Mechanosensitive ion channel NJR02_07815 PF02554 Carbon starvation protein CstA NJR02_07820 PF04397 LytTr DNA-binding domain NJR02_07820 PF00072 Response regulator receiver domain NJR02_07825 PF06580 Histidine kinase NJR02_07825 PF07694 5TMR of 5TMR-LYT NJR02_07830 PF00072 Response regulator receiver domain NJR02_07835 PF00171 Aldehyde dehydrogenase family NJR02_07835 PF00465 Iron-containing alcohol dehydrogenase NJR02_07840 PF01914 MarC family integral membrane protein NJR02_07845 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NJR02_07850 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_07855 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_07855 PF12911 N-terminal TM domain of oligopeptide transport permease C NJR02_07860 PF00005 ABC transporter NJR02_07860 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NJR02_07865 PF00005 ABC transporter NJR02_07865 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NJR02_07870 PF03741 Integral membrane protein TerC family NJR02_07875 PF00842 Alanine racemase, C-terminal domain NJR02_07875 PF01168 Alanine racemase, N-terminal domain NJR02_07885 PF00375 Sodium:dicarboxylate symporter family NJR02_07905 PF01979 Amidohydrolase family NJR02_07915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJR02_07915 PF00672 HAMP domain NJR02_07920 PF01230 HIT domain NJR02_07955 PF07549 SecD/SecF GG Motif NJR02_07955 PF13721 SecD export protein N-terminal TM region NJR02_07955 PF02355 Protein export membrane protein NJR02_07960 PF07549 SecD/SecF GG Motif NJR02_07960 PF02355 Protein export membrane protein NJR02_07965 PF13426 PAS domain NJR02_07965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJR02_07965 PF08447 PAS fold NJR02_07975 PF05661 Protein of unknown function (DUF808) NJR02_07980 PF08439 Oligopeptidase F NJR02_07980 PF01432 Peptidase family M3 NJR02_07985 PF01432 Peptidase family M3 NJR02_07985 PF08439 Oligopeptidase F NJR02_07990 PF05728 Uncharacterised protein family (UPF0227) NJR02_07995 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJR02_08000 PF01906 Putative heavy-metal-binding NJR02_08005 PF00884 Sulfatase NJR02_08015 PF00696 Amino acid kinase family NJR02_08015 PF01842 ACT domain NJR02_08020 PF00583 Acetyltransferase (GNAT) family NJR02_08020 PF00696 Amino acid kinase family NJR02_08025 PF01625 Peptide methionine sulfoxide reductase NJR02_08050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_08050 PF03466 LysR substrate binding domain NJR02_08055 PF02652 L-lactate permease NJR02_08060 PF02754 Cysteine-rich domain NJR02_08065 PF13183 4Fe-4S dicluster domain NJR02_08065 PF11870 Domain of unknown function (DUF3390) NJR02_08065 PF02589 LUD domain NJR02_08070 PF02589 LUD domain NJR02_08075 PF02913 FAD linked oxidases, C-terminal domain NJR02_08075 PF01565 FAD binding domain NJR02_08085 PF01609 Transposase DDE domain NJR02_08085 PF05598 Transposase domain (DUF772) NJR02_08095 PF12704 MacB-like periplasmic core domain NJR02_08095 PF02687 FtsX-like permease family NJR02_08100 PF00005 ABC transporter NJR02_08110 PF03600 Citrate transporter NJR02_08120 PF07690 Major Facilitator Superfamily NJR02_08140 PF01593 Flavin containing amine oxidoreductase NJR02_08145 PF03239 Iron permease FTR1 family NJR02_08175 PF14403 Circularly permuted ATP-grasp type 2 NJR02_08175 PF04168 A predicted alpha-helical domain with a conserved ER motif. NJR02_08180 PF14403 Circularly permuted ATP-grasp type 2 NJR02_08200 PF00916 Sulfate permease family NJR02_08200 PF01740 STAS domain NJR02_08215 PF00589 Phage integrase family NJR02_08215 PF02899 Phage integrase, N-terminal SAM-like domain NJR02_08225 PF03432 Relaxase/Mobilisation nuclease domain NJR02_08230 PF01609 Transposase DDE domain NJR02_08230 PF05598 Transposase domain (DUF772) NJR02_08235 PF05598 Transposase domain (DUF772) NJR02_08235 PF01609 Transposase DDE domain NJR02_08245 PF02132 RecR protein NJR02_08245 PF13662 Toprim domain NJR02_08250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_08250 PF00183 Hsp90 protein NJR02_08255 PF01610 Transposase NJR02_08255 PF13542 Helix-turn-helix domain of transposase family ISL3 NJR02_08255 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NJR02_08260 PF05191 Adenylate kinase, active site lid NJR02_08265 PF00762 Ferrochelatase NJR02_08270 PF01124 MAPEG family NJR02_08275 PF00294 pfkB family carbohydrate kinase NJR02_08280 PF17200 Single Cache domain 2 NJR02_08280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJR02_08280 PF00672 HAMP domain NJR02_08295 PF00563 EAL domain NJR02_08295 PF03707 Bacterial signalling protein N terminal repeat NJR02_08295 PF00990 Diguanylate cyclase, GGDEF domain NJR02_08300 PF00483 Nucleotidyl transferase NJR02_08310 PF07273 Protein of unknown function (DUF1439) NJR02_08315 PF00425 chorismate binding enzyme NJR02_08320 PF13193 AMP-binding enzyme C-terminal domain NJR02_08320 PF00501 AMP-binding enzyme NJR02_08325 PF00550 Phosphopantetheine attachment site NJR02_08325 PF00857 Isochorismatase family NJR02_08330 PF00975 Thioesterase domain NJR02_08330 PF00550 Phosphopantetheine attachment site NJR02_08330 PF00501 AMP-binding enzyme NJR02_08330 PF13193 AMP-binding enzyme C-terminal domain NJR02_08330 PF00668 Condensation domain NJR02_08340 PF00668 Condensation domain NJR02_08340 PF00550 Phosphopantetheine attachment site NJR02_08340 PF07993 Male sterility protein NJR02_08340 PF13193 AMP-binding enzyme C-terminal domain NJR02_08340 PF00501 AMP-binding enzyme NJR02_08345 PF00975 Thioesterase domain NJR02_08345 PF00501 AMP-binding enzyme NJR02_08345 PF13193 AMP-binding enzyme C-terminal domain NJR02_08345 PF00668 Condensation domain NJR02_08345 PF00550 Phosphopantetheine attachment site NJR02_08350 PF01497 Periplasmic binding protein NJR02_08355 PF17837 4'-phosphopantetheinyl transferase N-terminal domain NJR02_08355 PF01648 4'-phosphopantetheinyl transferase superfamily NJR02_08360 PF00005 ABC transporter NJR02_08365 PF01032 FecCD transport family NJR02_08370 PF01032 FecCD transport family NJR02_08375 PF07715 TonB-dependent Receptor Plug Domain NJR02_08375 PF00593 TonB dependent receptor NJR02_08395 PF11143 Protein of unknown function (DUF2919) NJR02_08400 PF01544 CorA-like Mg2+ transporter protein NJR02_08410 PF01012 Electron transfer flavoprotein domain NJR02_08415 PF01012 Electron transfer flavoprotein domain NJR02_08415 PF00766 Electron transfer flavoprotein FAD-binding domain NJR02_08420 PF00266 Aminotransferase class-V NJR02_08425 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NJR02_08430 PF00793 DAHP synthetase I family NJR02_08435 PF03741 Integral membrane protein TerC family NJR02_08445 PF08891 YfcL protein NJR02_08450 PF00501 AMP-binding enzyme NJR02_08455 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region NJR02_08455 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NJR02_08460 PF04172 LrgB-like family NJR02_08465 PF03788 LrgA family NJR02_08490 PF00929 Exonuclease NJR02_08490 PF08411 Exonuclease C-terminal NJR02_08500 PF00288 GHMP kinases N terminal domain NJR02_08500 PF10509 Galactokinase galactose-binding signature NJR02_08500 PF08544 GHMP kinases C terminal NJR02_08505 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain NJR02_08505 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain NJR02_08510 PF16363 GDP-mannose 4,6 dehydratase NJR02_08515 PF00356 Bacterial regulatory proteins, lacI family NJR02_08520 PF02264 LamB porin NJR02_08525 PF07745 Glycosyl hydrolase family 53 NJR02_08535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJR02_08535 PF00672 HAMP domain NJR02_08540 PF17912 MalK OB fold domain NJR02_08540 PF00005 ABC transporter NJR02_08545 PF13416 Bacterial extracellular solute-binding protein NJR02_08550 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_08555 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_08560 PF07745 Glycosyl hydrolase family 53 NJR02_08565 PF08532 Beta-galactosidase trimerisation domain NJR02_08565 PF02449 Beta-galactosidase NJR02_08565 PF08533 Beta-galactosidase C-terminal domain NJR02_08570 PF00367 phosphotransferase system, EIIB NJR02_08570 PF02378 Phosphotransferase system, EIIC NJR02_08575 PF07745 Glycosyl hydrolase family 53 NJR02_08580 PF00224 Pyruvate kinase, barrel domain NJR02_08580 PF02887 Pyruvate kinase, alpha/beta domain NJR02_08590 PF00149 Calcineurin-like phosphoesterase NJR02_08595 PF09924 Uncharacterised conserved protein (DUF2156) NJR02_08595 PF03706 Lysylphosphatidylglycerol synthase TM region NJR02_08605 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJR02_08610 PF00795 Carbon-nitrogen hydrolase NJR02_08615 PF00155 Aminotransferase class I and II NJR02_08620 PF03466 LysR substrate binding domain NJR02_08620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_08625 PF11762 L-arabinose isomerase C-terminal domain NJR02_08625 PF02610 L-arabinose isomerase NJR02_08630 PF00596 Class II Aldolase and Adducin N-terminal domain NJR02_08635 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NJR02_08640 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NJR02_08645 PF00005 ABC transporter NJR02_08650 PF02653 Branched-chain amino acid transport system / permease component NJR02_08655 PF02311 AraC-like ligand binding domain NJR02_08655 PF12833 Helix-turn-helix domain NJR02_08660 PF00444 Ribosomal protein L36 NJR02_08665 PF01197 Ribosomal protein L31 NJR02_08680 PF01863 Protein of unknown function DUF45 NJR02_08695 PF03606 C4-dicarboxylate anaerobic carrier NJR02_08705 PF01266 FAD dependent oxidoreductase NJR02_08705 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NJR02_08710 PF00109 Beta-ketoacyl synthase, N-terminal domain NJR02_08710 PF02801 Beta-ketoacyl synthase, C-terminal domain NJR02_08725 PF00285 Citrate synthase, C-terminal domain NJR02_08730 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NJR02_08735 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NJR02_08740 PF02910 Fumarate reductase flavoprotein C-term NJR02_08740 PF00890 FAD binding domain NJR02_08745 PF13085 2Fe-2S iron-sulfur cluster binding domain NJR02_08750 PF00676 Dehydrogenase E1 component NJR02_08750 PF16078 2-oxoglutarate dehydrogenase N-terminus NJR02_08750 PF02779 Transketolase, pyrimidine binding domain NJR02_08750 PF16870 2-oxoglutarate dehydrogenase C-terminal NJR02_08755 PF02817 e3 binding domain NJR02_08755 PF00364 Biotin-requiring enzyme NJR02_08755 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NJR02_08760 PF08442 ATP-grasp domain NJR02_08760 PF00549 CoA-ligase NJR02_08765 PF02629 CoA binding domain NJR02_08765 PF00549 CoA-ligase NJR02_08775 PF03692 Putative zinc- or iron-chelating domain NJR02_08780 PF01228 Glycine radical NJR02_08780 PF02901 Pyruvate formate lyase-like NJR02_08785 PF01226 Formate/nitrite transporter NJR02_08790 PF18381 YcaO cyclodehydratase C-terminal domain NJR02_08790 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding NJR02_08800 PF00893 Small Multidrug Resistance protein NJR02_08805 PF01118 Semialdehyde dehydrogenase, NAD binding domain NJR02_08805 PF02774 Semialdehyde dehydrogenase, dimerisation domain NJR02_08810 PF00313 'Cold-shock' DNA-binding domain NJR02_08815 PF02617 ATP-dependent Clp protease adaptor protein ClpS NJR02_08820 PF07724 AAA domain (Cdc48 subfamily) NJR02_08820 PF10431 C-terminal, D2-small domain, of ClpB protein NJR02_08820 PF02861 Clp amino terminal domain, pathogenicity island component NJR02_08820 PF17871 AAA lid domain NJR02_08820 PF00004 ATPase family associated with various cellular activities (AAA) NJR02_08825 PF01176 Translation initiation factor 1A / IF-1 NJR02_08830 PF04376 Arginine-tRNA-protein transferase, N terminus NJR02_08830 PF04377 Arginine-tRNA-protein transferase, C terminus NJR02_08835 PF03588 Leucyl/phenylalanyl-tRNA protein transferase NJR02_08840 PF05433 Glycine zipper 2TM domain NJR02_08845 PF00990 Diguanylate cyclase, GGDEF domain NJR02_08845 PF05230 MASE2 domain NJR02_08850 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJR02_08855 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NJR02_08855 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NJR02_08860 PF01037 Lrp/AsnC ligand binding domain NJR02_08865 PF09397 Ftsk gamma domain NJR02_08865 PF13491 4TM region of DNA translocase FtsK/SpoIIIE NJR02_08865 PF17854 FtsK alpha domain NJR02_08865 PF01580 FtsK/SpoIIIE family NJR02_08870 PF03548 Outer membrane lipoprotein carrier protein LolA NJR02_08875 PF00004 ATPase family associated with various cellular activities (AAA) NJR02_08875 PF16193 AAA C-terminal domain NJR02_08875 PF12002 MgsA AAA+ ATPase C terminal NJR02_08880 PF02403 Seryl-tRNA synthetase N-terminal domain NJR02_08880 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NJR02_08885 PF02674 Colicin V production protein NJR02_08890 PF00156 Phosphoribosyl transferase domain NJR02_08895 PF00232 Glycosyl hydrolase family 1 NJR02_08900 PF00367 phosphotransferase system, EIIB NJR02_08900 PF02378 Phosphotransferase system, EIIC NJR02_08905 PF00356 Bacterial regulatory proteins, lacI family NJR02_08910 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) NJR02_08915 PF00005 ABC transporter NJR02_08920 PF00005 ABC transporter NJR02_08920 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NJR02_08925 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_08925 PF12911 N-terminal TM domain of oligopeptide transport permease C NJR02_08930 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_08935 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NJR02_08940 PF00158 Sigma-54 interaction domain NJR02_08940 PF02954 Bacterial regulatory protein, Fis family NJR02_08945 PF04012 PspA/IM30 family NJR02_08950 PF06667 Phage shock protein B NJR02_08960 PF04317 YcjX-like family, DUF463 NJR02_08965 PF05128 Domain of unknown function (DUF697) NJR02_08970 PF00351 Biopterin-dependent aromatic amino acid hydroxylase NJR02_08975 PF01329 Pterin 4 alpha carbinolamine dehydratase NJR02_08980 PF18024 Helix-turn-helix domain NJR02_08980 PF00158 Sigma-54 interaction domain NJR02_08985 PF13689 YfiR/HmsC-like NJR02_08990 PF03707 Bacterial signalling protein N terminal repeat NJR02_08990 PF00990 Diguanylate cyclase, GGDEF domain NJR02_08990 PF00563 EAL domain NJR02_09000 PF04055 Radical SAM superfamily NJR02_09005 PF02601 Exonuclease VII, large subunit NJR02_09005 PF13742 OB-fold nucleic acid binding domain NJR02_09015 PF00128 Alpha amylase, catalytic domain NJR02_09015 PF03423 Carbohydrate binding domain (family 25) NJR02_09015 PF01373 Glycosyl hydrolase family 14 NJR02_09025 PF00478 IMP dehydrogenase / GMP reductase domain NJR02_09025 PF00571 CBS domain NJR02_09030 PF00117 Glutamine amidotransferase class-I NJR02_09030 PF02540 NAD synthase NJR02_09030 PF00958 GMP synthase C terminal domain NJR02_09050 PF01047 MarR family NJR02_09060 PF05724 Thiopurine S-methyltransferase (TPMT) NJR02_09065 PF05193 Peptidase M16 inactive domain NJR02_09065 PF16187 Middle or third domain of peptidase_M16 NJR02_09065 PF00675 Insulinase (Peptidase family M16) NJR02_09070 PF00300 Histidine phosphatase superfamily (branch 1) NJR02_09080 PF00892 EamA-like transporter family NJR02_09085 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NJR02_09095 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain NJR02_09100 PF02559 CarD-like/TRCF domain NJR02_09100 PF00270 DEAD/DEAH box helicase NJR02_09100 PF00271 Helicase conserved C-terminal domain NJR02_09100 PF17757 UvrB interaction domain NJR02_09100 PF03461 TRCF domain NJR02_09110 PF12704 MacB-like periplasmic core domain NJR02_09110 PF02687 FtsX-like permease family NJR02_09115 PF00005 ABC transporter NJR02_09120 PF12704 MacB-like periplasmic core domain NJR02_09120 PF02687 FtsX-like permease family NJR02_09135 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NJR02_09135 PF05698 Bacterial trigger factor protein (TF) C-terminus NJR02_09135 PF05697 Bacterial trigger factor protein (TF) NJR02_09140 PF00574 Clp protease NJR02_09145 PF06689 ClpX C4-type zinc finger NJR02_09145 PF07724 AAA domain (Cdc48 subfamily) NJR02_09145 PF10431 C-terminal, D2-small domain, of ClpB protein NJR02_09150 PF02190 ATP-dependent protease La (LON) substrate-binding domain NJR02_09150 PF00004 ATPase family associated with various cellular activities (AAA) NJR02_09150 PF05362 Lon protease (S16) C-terminal proteolytic domain NJR02_09155 PF00216 Bacterial DNA-binding protein NJR02_09160 PF13145 PPIC-type PPIASE domain NJR02_09165 PF12848 ABC transporter NJR02_09165 PF00005 ABC transporter NJR02_09170 PF00474 Sodium:solute symporter family NJR02_09175 PF04341 Protein of unknown function, DUF485 NJR02_09190 PF00378 Enoyl-CoA hydratase/isomerase NJR02_09195 PF01235 Sodium:alanine symporter family NJR02_09205 PF06167 Glucose-regulated metallo-peptidase M90 NJR02_09210 PF01184 GPR1/FUN34/yaaH family NJR02_09220 PF00376 MerR family regulatory protein NJR02_09220 PF09278 MerR, DNA binding NJR02_09225 PF00682 HMGL-like NJR02_09230 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NJR02_09230 PF00364 Biotin-requiring enzyme NJR02_09230 PF00289 Biotin carboxylase, N-terminal domain NJR02_09230 PF02785 Biotin carboxylase C-terminal domain NJR02_09235 PF00378 Enoyl-CoA hydratase/isomerase NJR02_09240 PF01039 Carboxyl transferase domain NJR02_09245 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NJR02_09245 PF02770 Acyl-CoA dehydrogenase, middle domain NJR02_09245 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NJR02_09250 PF00171 Aldehyde dehydrogenase family NJR02_09255 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NJR02_09255 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NJR02_09255 PF02770 Acyl-CoA dehydrogenase, middle domain NJR02_09260 PF00378 Enoyl-CoA hydratase/isomerase NJR02_09265 PF00378 Enoyl-CoA hydratase/isomerase NJR02_09270 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NJR02_09270 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NJR02_09280 PF13520 Amino acid permease NJR02_09285 PF01925 Sulfite exporter TauE/SafE NJR02_09305 PF01471 Putative peptidoglycan binding domain NJR02_09305 PF13401 AAA domain NJR02_09330 PF09615 CRISPR-associated protein (Cas_Csy3) NJR02_09355 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) NJR02_09355 PF18766 SWI2/SNF2 ATPase NJR02_09355 PF11867 Domain of unknown function (DUF3387) NJR02_09365 PF02384 N-6 DNA Methylase NJR02_09365 PF12161 HsdM N-terminal domain NJR02_09395 PF14461 Prokaryotic E2 family B NJR02_09395 PF00899 ThiF family NJR02_09410 PF12706 Beta-lactamase superfamily domain NJR02_09415 PF02653 Branched-chain amino acid transport system / permease component NJR02_09420 PF02653 Branched-chain amino acid transport system / permease component NJR02_09425 PF00005 ABC transporter NJR02_09430 PF13407 Periplasmic binding protein domain NJR02_09435 PF01609 Transposase DDE domain NJR02_09435 PF05598 Transposase domain (DUF772) NJR02_09440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_09440 PF03466 LysR substrate binding domain NJR02_09455 PF02634 FdhD/NarQ family NJR02_09460 PF00384 Molybdopterin oxidoreductase NJR02_09465 PF00990 Diguanylate cyclase, GGDEF domain NJR02_09465 PF00072 Response regulator receiver domain NJR02_09470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_09470 PF03466 LysR substrate binding domain NJR02_09475 PF00232 Glycosyl hydrolase family 1 NJR02_09485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_09485 PF03466 LysR substrate binding domain NJR02_09495 PF00933 Glycosyl hydrolase family 3 N terminal domain NJR02_09500 PF01261 Xylose isomerase-like TIM barrel NJR02_09505 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NJR02_09505 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NJR02_09510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_09510 PF03466 LysR substrate binding domain NJR02_09520 PF03279 Bacterial lipid A biosynthesis acyltransferase NJR02_09525 PF03279 Bacterial lipid A biosynthesis acyltransferase NJR02_09535 PF02678 Pirin NJR02_09535 PF05726 Pirin C-terminal cupin domain NJR02_09540 PF00136 DNA polymerase family B NJR02_09540 PF03104 DNA polymerase family B, exonuclease domain NJR02_09570 PF01554 MatE NJR02_09575 PF06786 Uncharacterised protein family (UPF0253) NJR02_09580 PF00677 Lumazine binding domain NJR02_09595 PF13419 Haloacid dehalogenase-like hydrolase NJR02_09600 PF02222 ATP-grasp domain NJR02_09600 PF01370 NAD dependent epimerase/dehydratase family NJR02_09605 PF00892 EamA-like transporter family NJR02_09610 PF02525 Flavodoxin-like fold NJR02_09640 PF12323 Helix-turn-helix domain NJR02_09640 PF01385 Probable transposase NJR02_09640 PF07282 Putative transposase DNA-binding domain NJR02_09645 PF17783 CvfB-like winged helix domain NJR02_09645 PF13509 S1 domain NJR02_09655 PF04269 Protein of unknown function, DUF440 NJR02_09660 PF00912 Transglycosylase NJR02_09665 PF04269 Protein of unknown function, DUF440 NJR02_09670 PF03776 Septum formation topological specificity factor MinE NJR02_09675 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NJR02_09680 PF03775 Septum formation inhibitor MinC, C-terminal domain NJR02_09680 PF05209 Septum formation inhibitor MinC, N-terminal domain NJR02_09685 PF05166 YcgL domain NJR02_09690 PF13406 Transglycosylase SLT domain NJR02_09695 PF03315 Serine dehydratase beta chain NJR02_09695 PF03313 Serine dehydratase alpha chain NJR02_09700 PF03313 Serine dehydratase alpha chain NJR02_09700 PF03315 Serine dehydratase beta chain NJR02_09705 PF06865 Pyrimidine/purine nucleoside phosphorylase NJR02_09710 PF00375 Sodium:dicarboxylate symporter family NJR02_09715 PF09278 MerR, DNA binding NJR02_09715 PF00376 MerR family regulatory protein NJR02_09720 PF02803 Thiolase, C-terminal domain NJR02_09720 PF00108 Thiolase, N-terminal domain NJR02_09725 PF00563 EAL domain NJR02_09725 PF08668 HDOD domain NJR02_09730 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) NJR02_09735 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) NJR02_09745 PF08281 Sigma-70, region 4 NJR02_09745 PF04542 Sigma-70 region 2 NJR02_09770 PF01882 Protein of unknown function DUF58 NJR02_09775 PF07726 ATPase family associated with various cellular activities (AAA) NJR02_09775 PF17863 AAA lid domain NJR02_09780 PF02803 Thiolase, C-terminal domain NJR02_09780 PF00108 Thiolase, N-terminal domain NJR02_09785 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NJR02_09785 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NJR02_09785 PF00378 Enoyl-CoA hydratase/isomerase NJR02_09795 PF07152 YaeQ protein NJR02_09805 PF07690 Major Facilitator Superfamily NJR02_09810 PF00005 ABC transporter NJR02_09815 PF01032 FecCD transport family NJR02_09830 PF05433 Glycine zipper 2TM domain NJR02_09835 PF00501 AMP-binding enzyme NJR02_09835 PF13193 AMP-binding enzyme C-terminal domain NJR02_09845 PF01502 Phosphoribosyl-AMP cyclohydrolase NJR02_09845 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase NJR02_09850 PF00977 Histidine biosynthesis protein NJR02_09855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_09855 PF01627 Hpt domain NJR02_09855 PF00072 Response regulator receiver domain NJR02_09855 PF00512 His Kinase A (phospho-acceptor) domain NJR02_09860 PF00990 Diguanylate cyclase, GGDEF domain NJR02_09860 PF08448 PAS fold NJR02_09865 PF00072 Response regulator receiver domain NJR02_09870 PF00977 Histidine biosynthesis protein NJR02_09875 PF00117 Glutamine amidotransferase class-I NJR02_09880 PF00475 Imidazoleglycerol-phosphate dehydratase NJR02_09880 PF08645 Polynucleotide kinase 3 phosphatase NJR02_09885 PF00155 Aminotransferase class I and II NJR02_09890 PF00815 Histidinol dehydrogenase NJR02_09895 PF01634 ATP phosphoribosyltransferase NJR02_09895 PF08029 HisG, C-terminal domain NJR02_09905 PF13307 Helicase C-terminal domain NJR02_09905 PF04851 Type III restriction enzyme, res subunit NJR02_09910 PF00814 Glycoprotease family NJR02_09920 PF00561 alpha/beta hydrolase fold NJR02_09925 PF00501 AMP-binding enzyme NJR02_09925 PF13193 AMP-binding enzyme C-terminal domain NJR02_09930 PF00570 HRDC domain NJR02_09930 PF01612 3'-5' exonuclease NJR02_09940 PF00892 EamA-like transporter family NJR02_09950 PF01207 Dihydrouridine synthase (Dus) NJR02_09955 PF04304 Protein of unknown function (DUF454) NJR02_09960 PF00156 Phosphoribosyl transferase domain NJR02_09965 PF12169 DNA polymerase III subunits gamma and tau domain III NJR02_09965 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding NJR02_09965 PF12170 DNA polymerase III tau subunit V interacting with alpha NJR02_09970 PF02575 YbaB/EbfC DNA-binding family NJR02_09975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_09975 PF03466 LysR substrate binding domain NJR02_09980 PF02678 Pirin NJR02_09980 PF05726 Pirin C-terminal cupin domain NJR02_09985 PF07670 Nucleoside recognition NJR02_09990 PF00196 Bacterial regulatory proteins, luxR family NJR02_09990 PF00072 Response regulator receiver domain NJR02_09995 PF02272 DHHA1 domain NJR02_09995 PF01743 Poly A polymerase head domain NJR02_09995 PF00571 CBS domain NJR02_09995 PF01368 DHH family NJR02_10000 PF00270 DEAD/DEAH box helicase NJR02_10000 PF11898 Domain of unknown function (DUF3418) NJR02_10000 PF04408 Helicase associated domain (HA2) NJR02_10000 PF00271 Helicase conserved C-terminal domain NJR02_10000 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold NJR02_10010 PF01386 Ribosomal L25p family NJR02_10015 PF00072 Response regulator receiver domain NJR02_10015 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NJR02_10015 PF01627 Hpt domain NJR02_10015 PF00672 HAMP domain NJR02_10015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_10015 PF00512 His Kinase A (phospho-acceptor) domain NJR02_10025 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NJR02_10025 PF01627 Hpt domain NJR02_10025 PF00072 Response regulator receiver domain NJR02_10025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_10025 PF00672 HAMP domain NJR02_10025 PF00512 His Kinase A (phospho-acceptor) domain NJR02_10030 PF00072 Response regulator receiver domain NJR02_10030 PF00672 HAMP domain NJR02_10030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_10030 PF00512 His Kinase A (phospho-acceptor) domain NJR02_10030 PF01627 Hpt domain NJR02_10030 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NJR02_10035 PF00072 Response regulator receiver domain NJR02_10040 PF00753 Metallo-beta-lactamase superfamily NJR02_10050 PF00586 AIR synthase related protein, N-terminal domain NJR02_10050 PF02769 AIR synthase related protein, C-terminal domain NJR02_10070 PF10672 S-adenosylmethionine-dependent methyltransferase NJR02_10070 PF17785 PUA-like domain NJR02_10075 PF00672 HAMP domain NJR02_10075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJR02_10075 PF12729 Four helix bundle sensory module for signal transduction NJR02_10080 PF00708 Acylphosphatase NJR02_10095 PF08264 Anticodon-binding domain of tRNA NJR02_10095 PF09334 tRNA synthetases class I (M) NJR02_10095 PF01588 Putative tRNA binding domain NJR02_10100 PF10609 NUBPL iron-transfer P-loop NTPase NJR02_10105 PF00485 Phosphoribulokinase / Uridine kinase family NJR02_10110 PF00692 dUTPase NJR02_10115 PF01384 Phosphate transporter family NJR02_10120 PF12111 Polyribonucleotide phosphorylase C terminal NJR02_10120 PF10150 Ribonuclease E/G family NJR02_10120 PF00575 S1 RNA binding domain NJR02_10125 PF00849 RNA pseudouridylate synthase NJR02_10125 PF01479 S4 domain NJR02_10130 PF02545 Maf-like protein NJR02_10140 PF02620 Large ribosomal RNA subunit accumulation protein YceD NJR02_10145 PF01783 Ribosomal L32p protein family NJR02_10150 PF02504 Fatty acid synthesis protein NJR02_10155 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NJR02_10155 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NJR02_10160 PF00698 Acyl transferase domain NJR02_10170 PF00550 Phosphopantetheine attachment site NJR02_10175 PF00109 Beta-ketoacyl synthase, N-terminal domain NJR02_10175 PF02801 Beta-ketoacyl synthase, C-terminal domain NJR02_10180 PF01063 Amino-transferase class IV NJR02_10185 PF02618 YceG-like family NJR02_10190 PF02223 Thymidylate kinase NJR02_10195 PF09115 DNA polymerase III, delta subunit, C terminal NJR02_10200 PF01026 TatD related DNase NJR02_10205 PF00589 Phage integrase family NJR02_10215 PF01189 16S rRNA methyltransferase RsmB/F NJR02_10215 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF NJR02_10215 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF NJR02_10220 PF02470 MlaD protein NJR02_10225 PF04403 Paraquat-inducible protein A NJR02_10235 PF07130 YebG protein NJR02_10245 PF13654 AAA domain NJR02_10245 PF05362 Lon protease (S16) C-terminal proteolytic domain NJR02_10250 PF07977 FabA-like domain NJR02_10255 PF04957 Ribosome modulation factor NJR02_10265 PF00005 ABC transporter NJR02_10265 PF16326 ABC transporter C-terminal domain NJR02_10265 PF12848 ABC transporter NJR02_10275 PF10672 S-adenosylmethionine-dependent methyltransferase NJR02_10275 PF02926 THUMP domain NJR02_10275 PF01170 Putative RNA methylase family UPF0020 NJR02_10280 PF07126 Cell-division protein ZapC NJR02_10285 PF01180 Dihydroorotate dehydrogenase NJR02_10290 PF05088 Bacterial NAD-glutamate dehydrogenase NJR02_10300 PF11940 Domain of unknown function (DUF3458) Ig-like fold NJR02_10300 PF17432 Domain of unknown function (DUF3458_C) ARM repeats NJR02_10300 PF01433 Peptidase family M1 domain NJR02_10305 PF17804 Tail specific protease N-terminal domain NJR02_10305 PF03572 Peptidase family S41 NJR02_10305 PF00595 PDZ domain NJR02_10305 PF11818 C-terminal domain of tail specific protease (DUF3340) NJR02_10310 PF04352 ProQ/FINO family NJR02_10310 PF17516 ProQ C-terminal domain NJR02_10315 PF13185 GAF domain NJR02_10330 PF00115 Cytochrome C and Quinol oxidase polypeptide I NJR02_10345 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP NJR02_10345 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NJR02_10355 PF00403 Heavy-metal-associated domain NJR02_10370 PF13545 Crp-like helix-turn-helix domain NJR02_10370 PF00027 Cyclic nucleotide-binding domain NJR02_10375 PF00582 Universal stress protein family NJR02_10380 PF01171 PP-loop family NJR02_10395 PF00043 Glutathione S-transferase, C-terminal domain NJR02_10395 PF02798 Glutathione S-transferase, N-terminal domain NJR02_10400 PF05025 RbsD / FucU transport protein family NJR02_10405 PF00005 ABC transporter NJR02_10410 PF02653 Branched-chain amino acid transport system / permease component NJR02_10415 PF13407 Periplasmic binding protein domain NJR02_10420 PF00294 pfkB family carbohydrate kinase NJR02_10425 PF00356 Bacterial regulatory proteins, lacI family NJR02_10440 PF00563 EAL domain NJR02_10440 PF00990 Diguanylate cyclase, GGDEF domain NJR02_10440 PF03707 Bacterial signalling protein N terminal repeat NJR02_10455 PF02146 Sir2 family NJR02_10470 PF09456 RcsC Alpha-Beta-Loop (ABL) NJR02_10470 PF00072 Response regulator receiver domain NJR02_10470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_10470 PF00512 His Kinase A (phospho-acceptor) domain NJR02_10475 PF00216 Bacterial DNA-binding protein NJR02_10480 PF03484 tRNA synthetase B5 domain NJR02_10480 PF03147 Ferredoxin-fold anticodon binding domain NJR02_10480 PF01588 Putative tRNA binding domain NJR02_10480 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NJR02_10480 PF03483 B3/4 domain NJR02_10485 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NJR02_10485 PF01409 tRNA synthetases class II core domain (F) NJR02_10490 PF00453 Ribosomal protein L20 NJR02_10495 PF01632 Ribosomal protein L35 NJR02_10500 PF00707 Translation initiation factor IF-3, C-terminal domain NJR02_10500 PF05198 Translation initiation factor IF-3, N-terminal domain NJR02_10505 PF03129 Anticodon binding domain NJR02_10505 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NJR02_10505 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NJR02_10505 PF02824 TGS domain NJR02_10545 PF01385 Probable transposase NJR02_10545 PF12323 Helix-turn-helix domain NJR02_10545 PF07282 Putative transposase DNA-binding domain NJR02_10565 PF03989 DNA gyrase C-terminal domain, beta-propeller NJR02_10565 PF00521 DNA gyrase/topoisomerase IV, subunit A NJR02_10575 PF13419 Haloacid dehalogenase-like hydrolase NJR02_10580 PF03477 ATP cone domain NJR02_10580 PF02867 Ribonucleotide reductase, barrel domain NJR02_10580 PF00317 Ribonucleotide reductase, all-alpha domain NJR02_10585 PF00268 Ribonucleotide reductase, small chain NJR02_10590 PF00111 2Fe-2S iron-sulfur cluster binding domain NJR02_10595 PF03562 MltA specific insert domain NJR02_10595 PF06725 3D domain NJR02_10600 PF06945 Protein of unknown function (DUF1289) NJR02_10605 PF02378 Phosphotransferase system, EIIC NJR02_10605 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NJR02_10610 PF00294 pfkB family carbohydrate kinase NJR02_10615 PF00381 PTS HPr component phosphorylation site NJR02_10615 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NJR02_10620 PF00356 Bacterial regulatory proteins, lacI family NJR02_10620 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NJR02_10625 PF03222 Tryptophan/tyrosine permease family NJR02_10640 PF00270 DEAD/DEAH box helicase NJR02_10640 PF00271 Helicase conserved C-terminal domain NJR02_10650 PF01264 Chorismate synthase NJR02_10655 PF05175 Methyltransferase small domain NJR02_10660 PF01713 Smr domain NJR02_10700 PF03831 PhnA domain NJR02_10700 PF08274 PhnA Zinc-Ribbon NJR02_10750 PF05036 Sporulation related domain NJR02_10750 PF03330 Lytic transglycolase NJR02_10755 PF04310 MukB N-terminal NJR02_10755 PF16330 MukB hinge domain NJR02_10760 PF04288 MukE-like family NJR02_10765 PF03882 MukF winged-helix domain NJR02_10765 PF17193 MukF C-terminal domain NJR02_10765 PF17192 MukF middle domain NJR02_10770 PF13847 Methyltransferase domain NJR02_10775 PF02698 DUF218 domain NJR02_10780 PF00121 Triosephosphate isomerase NJR02_10785 PF00365 Phosphofructokinase NJR02_10795 PF01546 Peptidase family M20/M25/M40 NJR02_10795 PF07687 Peptidase dimerisation domain NJR02_10800 PF13419 Haloacid dehalogenase-like hydrolase NJR02_10805 PF00883 Cytosol aminopeptidase family, catalytic domain NJR02_10805 PF02789 Cytosol aminopeptidase family, N-terminal domain NJR02_10850 PF11398 Protein of unknown function (DUF2813) NJR02_10865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_10865 PF03466 LysR substrate binding domain NJR02_10870 PF01925 Sulfite exporter TauE/SafE NJR02_10880 PF03942 DTW domain NJR02_10885 PF07478 D-ala D-ala ligase C-terminus NJR02_10885 PF01820 D-ala D-ala ligase N-terminus NJR02_10895 PF00255 Glutathione peroxidase NJR02_10900 PF00271 Helicase conserved C-terminal domain NJR02_10900 PF00270 DEAD/DEAH box helicase NJR02_10905 PF00583 Acetyltransferase (GNAT) family NJR02_10920 PF01928 CYTH domain NJR02_10935 PF03707 Bacterial signalling protein N terminal repeat NJR02_10935 PF00990 Diguanylate cyclase, GGDEF domain NJR02_10935 PF13188 PAS domain NJR02_10935 PF00563 EAL domain NJR02_10940 PF05052 MerE protein NJR02_10945 PF13411 MerR HTH family regulatory protein NJR02_10950 PF00403 Heavy-metal-associated domain NJR02_10950 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJR02_10950 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NJR02_10955 PF03203 MerC mercury resistance protein NJR02_10960 PF00403 Heavy-metal-associated domain NJR02_10965 PF02411 MerT mercuric transport protein NJR02_10970 PF00376 MerR family regulatory protein NJR02_10970 PF09278 MerR, DNA binding NJR02_10980 PF00302 Chloramphenicol acetyltransferase NJR02_10990 PF01526 Tn3 transposase DDE domain NJR02_10990 PF13700 Domain of unknown function (DUF4158) NJR02_10995 PF00239 Resolvase, N terminal domain NJR02_10995 PF02796 Helix-turn-helix domain of resolvase NJR02_11000 PF11809 Domain of unknown function (DUF3330) NJR02_11000 PF00563 EAL domain NJR02_11010 PF05052 MerE protein NJR02_11015 PF13411 MerR HTH family regulatory protein NJR02_11020 PF00403 Heavy-metal-associated domain NJR02_11020 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJR02_11020 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NJR02_11030 PF00403 Heavy-metal-associated domain NJR02_11035 PF02411 MerT mercuric transport protein NJR02_11040 PF00376 MerR family regulatory protein NJR02_11040 PF09278 MerR, DNA binding NJR02_11055 PF09339 IclR helix-turn-helix domain NJR02_11055 PF01614 Bacterial transcriptional regulator NJR02_11060 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NJR02_11060 PF00529 HlyD membrane-fusion protein of T1SS NJR02_11065 PF00873 AcrB/AcrD/AcrF family NJR02_11070 PF02321 Outer membrane efflux protein NJR02_11075 PF09411 Lipid A 3-O-deacylase (PagL) NJR02_11080 PF00171 Aldehyde dehydrogenase family NJR02_11080 PF01619 Proline dehydrogenase NJR02_11080 PF14850 DNA-binding domain of Proline dehydrogenase NJR02_11080 PF18327 Proline utilization A proline dehydrogenase N-terminal domain NJR02_11095 PF07690 Major Facilitator Superfamily NJR02_11100 PF02909 Tetracyclin repressor-like, C-terminal domain NJR02_11100 PF00440 Bacterial regulatory proteins, tetR family NJR02_11115 PF09411 Lipid A 3-O-deacylase (PagL) NJR02_11120 PF00171 Aldehyde dehydrogenase family NJR02_11120 PF01619 Proline dehydrogenase NJR02_11120 PF14850 DNA-binding domain of Proline dehydrogenase NJR02_11120 PF18327 Proline utilization A proline dehydrogenase N-terminal domain NJR02_11130 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase NJR02_11135 PF01636 Phosphotransferase enzyme family NJR02_11140 PF00239 Resolvase, N terminal domain NJR02_11140 PF02796 Helix-turn-helix domain of resolvase NJR02_11145 PF13700 Domain of unknown function (DUF4158) NJR02_11145 PF01526 Tn3 transposase DDE domain NJR02_11170 PF00809 Pterin binding enzyme NJR02_11175 PF01636 Phosphotransferase enzyme family NJR02_11180 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase NJR02_11185 PF18790 KfrB protein NJR02_11190 PF03743 Bacterial conjugation TrbI-like protein NJR02_11200 PF13673 Acetyltransferase (GNAT) domain NJR02_11205 PF03992 Antibiotic biosynthesis monooxygenase NJR02_11210 PF08543 Phosphomethylpyrimidine kinase NJR02_11235 PF01575 MaoC like domain NJR02_11265 PF00664 ABC transporter transmembrane region NJR02_11265 PF00005 ABC transporter NJR02_11270 PF00664 ABC transporter transmembrane region NJR02_11270 PF00005 ABC transporter NJR02_11275 PF00672 HAMP domain NJR02_11275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_11275 PF00512 His Kinase A (phospho-acceptor) domain NJR02_11275 PF01627 Hpt domain NJR02_11275 PF00072 Response regulator receiver domain NJR02_11275 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NJR02_11280 PF00085 Thioredoxin NJR02_11285 PF00939 Sodium:sulfate symporter transmembrane region NJR02_11295 PF00343 Carbohydrate phosphorylase NJR02_11385 PF00425 chorismate binding enzyme NJR02_11385 PF04715 Anthranilate synthase component I, N terminal region NJR02_11390 PF00293 NUDIX domain NJR02_11395 PF03222 Tryptophan/tyrosine permease family NJR02_11400 PF00375 Sodium:dicarboxylate symporter family NJR02_11405 PF09382 RQC domain NJR02_11405 PF16124 RecQ zinc-binding NJR02_11405 PF00570 HRDC domain NJR02_11405 PF00271 Helicase conserved C-terminal domain NJR02_11405 PF00270 DEAD/DEAH box helicase NJR02_11410 PF08298 PrkA AAA domain NJR02_11410 PF06798 PrkA serine protein kinase C-terminal domain NJR02_11415 PF04285 Protein of unknown function (DUF444) NJR02_11420 PF04293 SpoVR like protein NJR02_11425 PF00392 Bacterial regulatory proteins, gntR family NJR02_11425 PF07840 FadR C-terminal domain NJR02_11430 PF06450 Bacterial Na+/H+ antiporter B (NhaB) NJR02_11435 PF02600 Disulfide bond formation protein DsbB NJR02_11440 PF09335 SNARE associated Golgi protein NJR02_11450 PF02151 UvrB/uvrC motif NJR02_11450 PF12344 Ultra-violet resistance protein B NJR02_11450 PF17757 UvrB interaction domain NJR02_11450 PF00271 Helicase conserved C-terminal domain NJR02_11450 PF04851 Type III restriction enzyme, res subunit NJR02_11460 PF06826 Predicted Permease Membrane Region NJR02_11460 PF02080 TrkA-C domain NJR02_11465 PF01464 Transglycosylase SLT domain NJR02_11465 PF01551 Peptidase family M23 NJR02_11465 PF10145 Phage-related minor tail protein NJR02_11470 PF03401 Tripartite tricarboxylate transporter family receptor NJR02_11480 PF01970 Tripartite tricarboxylate transporter TctA family NJR02_11485 PF12431 Transcriptional regulator NJR02_11485 PF08279 HTH domain NJR02_11485 PF00072 Response regulator receiver domain NJR02_11490 PF00989 PAS fold NJR02_11490 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain NJR02_11490 PF17203 Single cache domain 3 NJR02_11490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_11495 PF01047 MarR family NJR02_11495 PF00480 ROK family NJR02_11500 PF00672 HAMP domain NJR02_11500 PF17200 Single Cache domain 2 NJR02_11500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJR02_11505 PF02810 SEC-C motif NJR02_11510 PF01266 FAD dependent oxidoreductase NJR02_11510 PF04324 BFD-like [2Fe-2S] binding domain NJR02_11515 PF00890 FAD binding domain NJR02_11520 PF02754 Cysteine-rich domain NJR02_11520 PF13183 4Fe-4S dicluster domain NJR02_11530 PF02335 Cytochrome c552 NJR02_11535 PF13435 Cytochrome c554 and c-prime NJR02_11535 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) NJR02_11540 PF13247 4Fe-4S dicluster domain NJR02_11540 PF00037 4Fe-4S binding domain NJR02_11545 PF03916 Polysulphide reductase, NrfD NJR02_11550 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal NJR02_11550 PF01578 Cytochrome C assembly protein NJR02_11555 PF08534 Redoxin NJR02_11560 PF03918 Cytochrome C biogenesis protein NJR02_11565 PF05598 Transposase domain (DUF772) NJR02_11565 PF01609 Transposase DDE domain NJR02_11570 PF01609 Transposase DDE domain NJR02_11570 PF05598 Transposase domain (DUF772) NJR02_11575 PF00768 D-alanyl-D-alanine carboxypeptidase NJR02_11585 PF04244 Deoxyribodipyrimidine photo-lyase-related protein NJR02_11590 PF01266 FAD dependent oxidoreductase NJR02_11595 PF00571 CBS domain NJR02_11595 PF01743 Poly A polymerase head domain NJR02_11605 PF08267 Cobalamin-independent synthase, N-terminal domain NJR02_11605 PF01717 Cobalamin-independent synthase, Catalytic domain NJR02_11610 PF03466 LysR substrate binding domain NJR02_11610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_11620 PF00593 TonB dependent receptor NJR02_11620 PF07715 TonB-dependent Receptor Plug Domain NJR02_11625 PF00196 Bacterial regulatory proteins, luxR family NJR02_11625 PF00563 EAL domain NJR02_11630 PF02311 AraC-like ligand binding domain NJR02_11630 PF12833 Helix-turn-helix domain NJR02_11640 PF13460 NAD(P)H-binding NJR02_11650 PF01053 Cys/Met metabolism PLP-dependent enzyme NJR02_11655 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NJR02_11655 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NJR02_11680 PF13737 Transposase DDE domain NJR02_11695 PF02646 RmuC family NJR02_11710 PF00293 NUDIX domain NJR02_11745 PF00580 UvrD/REP helicase N-terminal domain NJR02_11745 PF13361 UvrD-like helicase C-terminal domain NJR02_11750 PF00271 Helicase conserved C-terminal domain NJR02_11750 PF00270 DEAD/DEAH box helicase NJR02_11750 PF09369 Domain of unknown function (DUF1998) NJR02_11760 PF01609 Transposase DDE domain NJR02_11760 PF05598 Transposase domain (DUF772) NJR02_11770 PF01610 Transposase NJR02_11770 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NJR02_11770 PF13542 Helix-turn-helix domain of transposase family ISL3 NJR02_11775 PF00271 Helicase conserved C-terminal domain NJR02_11775 PF18337 RapA N-terminal Tudor like domain NJR02_11775 PF18339 RapA N-terminal Tudor like domain 1 NJR02_11775 PF00176 SNF2 family N-terminal domain NJR02_11775 PF12137 RNA polymerase recycling family C-terminal NJR02_11835 PF03783 Curli production assembly/transport component CsgG NJR02_11845 PF10627 Curli assembly protein CsgE NJR02_11850 PF00196 Bacterial regulatory proteins, luxR family NJR02_11865 PF05598 Transposase domain (DUF772) NJR02_11865 PF01609 Transposase DDE domain NJR02_11940 PF13657 HipA N-terminal domain NJR02_11940 PF07804 HipA-like C-terminal domain NJR02_11950 PF00141 Peroxidase NJR02_11955 PF00455 DeoR C terminal sensor domain NJR02_11955 PF08220 DeoR-like helix-turn-helix domain NJR02_11975 PF00156 Phosphoribosyl transferase domain NJR02_11980 PF12706 Beta-lactamase superfamily domain NJR02_11985 PF01965 DJ-1/PfpI family NJR02_12005 PF10722 Putative bacterial sensory transduction regulator NJR02_12015 PF00265 Thymidine kinase NJR02_12020 PF03553 Na+/H+ antiporter family NJR02_12025 PF00816 H-NS histone family NJR02_12030 PF01923 Cobalamin adenosyltransferase NJR02_12035 PF12843 Putative quorum-sensing-regulated virulence factor NJR02_12040 PF04055 Radical SAM superfamily NJR02_12045 PF06508 Queuosine biosynthesis protein QueC NJR02_12060 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NJR02_12065 PF18073 Rubredoxin metal binding domain NJR02_12075 PF00216 Bacterial DNA-binding protein NJR02_12080 PF00575 S1 RNA binding domain NJR02_12085 PF02224 Cytidylate kinase NJR02_12090 PF00925 GTP cyclohydrolase II NJR02_12095 PF03466 LysR substrate binding domain NJR02_12095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_12100 PF07690 Major Facilitator Superfamily NJR02_12120 PF03806 AbgT putative transporter family NJR02_12125 PF03707 Bacterial signalling protein N terminal repeat NJR02_12125 PF00990 Diguanylate cyclase, GGDEF domain NJR02_12125 PF13188 PAS domain NJR02_12125 PF00563 EAL domain NJR02_12135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_12135 PF03466 LysR substrate binding domain NJR02_12140 PF00486 Transcriptional regulatory protein, C terminal NJR02_12140 PF00072 Response regulator receiver domain NJR02_12150 PF01212 Beta-eliminating lyase NJR02_12165 PF00248 Aldo/keto reductase family NJR02_12170 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) NJR02_12180 PF03411 Penicillin-insensitive murein endopeptidase NJR02_12190 PF04536 TPM domain NJR02_12210 PF13495 Phage integrase, N-terminal SAM-like domain NJR02_12210 PF00589 Phage integrase family NJR02_12235 PF01618 MotA/TolQ/ExbB proton channel family NJR02_12240 PF00691 OmpA family NJR02_12240 PF13677 Membrane MotB of proton-channel complex MotA/MotB NJR02_12245 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 NJR02_12250 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NJR02_12255 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NJR02_12255 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NJR02_12265 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NJR02_12265 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NJR02_12270 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NJR02_12270 PF00384 Molybdopterin oxidoreductase NJR02_12270 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NJR02_12275 PF00146 NADH dehydrogenase NJR02_12280 PF12838 4Fe-4S dicluster domain NJR02_12285 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 NJR02_12290 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NJR02_12295 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NJR02_12295 PF00361 Proton-conducting membrane transporter NJR02_12300 PF00361 Proton-conducting membrane transporter NJR02_12305 PF00361 Proton-conducting membrane transporter NJR02_12310 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NJR02_12310 PF02769 AIR synthase related protein, C-terminal domain NJR02_12310 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal NJR02_12315 PF01464 Transglycosylase SLT domain NJR02_12315 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJR02_12320 PF07191 zinc-ribbons NJR02_12325 PF01926 50S ribosome-binding GTPase NJR02_12325 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NJR02_12330 PF13360 PQQ-like domain NJR02_12335 PF09976 Tetratricopeptide repeat-like domain NJR02_12340 PF13393 Histidyl-tRNA synthetase NJR02_12340 PF03129 Anticodon binding domain NJR02_12345 PF04551 GcpE protein NJR02_12350 PF13464 Domain of unknown function (DUF4115) NJR02_12360 PF04055 Radical SAM superfamily NJR02_12365 PF00334 Nucleoside diphosphate kinase NJR02_12370 PF00883 Cytosol aminopeptidase family, catalytic domain NJR02_12370 PF12404 Peptidase NJR02_12375 PF12404 Peptidase NJR02_12375 PF00883 Cytosol aminopeptidase family, catalytic domain NJR02_12380 PF00111 2Fe-2S iron-sulfur cluster binding domain NJR02_12385 PF00012 Hsp70 protein NJR02_12390 PF00226 DnaJ domain NJR02_12390 PF07743 HSCB C-terminal oligomerisation domain NJR02_12395 PF01521 Iron-sulphur cluster biosynthesis NJR02_12400 PF01592 NifU-like N terminal domain NJR02_12405 PF00266 Aminotransferase class-V NJR02_12410 PF02082 Transcriptional regulator NJR02_12415 PF00588 SpoU rRNA Methylase family NJR02_12420 PF02036 SCP-2 sterol transfer family NJR02_12425 PF01136 Peptidase family U32 NJR02_12430 PF01136 Peptidase family U32 NJR02_12435 PF07719 Tetratricopeptide repeat NJR02_12435 PF13181 Tetratricopeptide repeat NJR02_12440 PF00581 Rhodanese-like domain NJR02_12445 PF02355 Protein export membrane protein NJR02_12445 PF07549 SecD/SecF GG Motif NJR02_12450 PF07549 SecD/SecF GG Motif NJR02_12450 PF13721 SecD export protein N-terminal TM region NJR02_12450 PF02355 Protein export membrane protein NJR02_12455 PF02699 Preprotein translocase subunit NJR02_12460 PF01702 Queuine tRNA-ribosyltransferase NJR02_12465 PF02547 Queuosine biosynthesis protein NJR02_12470 PF00571 CBS domain NJR02_12475 PF00578 AhpC/TSA family NJR02_12475 PF10417 C-terminal domain of 1-Cys peroxiredoxin NJR02_12480 PF13192 Thioredoxin domain NJR02_12480 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJR02_12495 PF00501 AMP-binding enzyme NJR02_12495 PF00668 Condensation domain NJR02_12495 PF08241 Methyltransferase domain NJR02_12495 PF00550 Phosphopantetheine attachment site NJR02_12495 PF00975 Thioesterase domain NJR02_12495 PF00391 PEP-utilising enzyme, mobile domain NJR02_12495 PF13193 AMP-binding enzyme C-terminal domain NJR02_12505 PF02347 Glycine cleavage system P-protein NJR02_12510 PF01597 Glycine cleavage H-protein NJR02_12515 PF08669 Glycine cleavage T-protein C-terminal barrel domain NJR02_12515 PF01571 Aminomethyltransferase folate-binding domain NJR02_12520 PF01494 FAD binding domain NJR02_12525 PF01494 FAD binding domain NJR02_12530 PF03695 Uncharacterised protein family (UPF0149) NJR02_12535 PF05164 Cell division protein ZapA NJR02_12545 PF07690 Major Facilitator Superfamily NJR02_12550 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NJR02_12550 PF00005 ABC transporter NJR02_12555 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_12555 PF12911 N-terminal TM domain of oligopeptide transport permease C NJR02_12560 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_12570 PF00043 Glutathione S-transferase, C-terminal domain NJR02_12570 PF02798 Glutathione S-transferase, N-terminal domain NJR02_12575 PF02798 Glutathione S-transferase, N-terminal domain NJR02_12575 PF00043 Glutathione S-transferase, C-terminal domain NJR02_12585 PF00459 Inositol monophosphatase family NJR02_12590 PF18393 MotY N-terminal domain NJR02_12590 PF00691 OmpA family NJR02_12595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJR02_12595 PF00672 HAMP domain NJR02_12595 PF12729 Four helix bundle sensory module for signal transduction NJR02_12600 PF00929 Exonuclease NJR02_12605 PF13726 Na+-H+ antiporter family NJR02_12605 PF03553 Na+/H+ antiporter family NJR02_12610 PF07690 Major Facilitator Superfamily NJR02_12615 PF03466 LysR substrate binding domain NJR02_12615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_12620 PF00563 EAL domain NJR02_12620 PF00990 Diguanylate cyclase, GGDEF domain NJR02_12620 PF08447 PAS fold NJR02_12620 PF08448 PAS fold NJR02_12630 PF00270 DEAD/DEAH box helicase NJR02_12630 PF03880 DbpA RNA binding domain NJR02_12630 PF00271 Helicase conserved C-terminal domain NJR02_12635 PF03061 Thioesterase superfamily NJR02_12645 PF01565 FAD binding domain NJR02_12645 PF02913 FAD linked oxidases, C-terminal domain NJR02_12645 PF13183 4Fe-4S dicluster domain NJR02_12655 PF03471 Transporter associated domain NJR02_12655 PF03741 Integral membrane protein TerC family NJR02_12660 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NJR02_12665 PF08240 Alcohol dehydrogenase GroES-like domain NJR02_12665 PF00107 Zinc-binding dehydrogenase NJR02_12670 PF00962 Adenosine/AMP deaminase NJR02_12675 PF13344 Haloacid dehalogenase-like hydrolase NJR02_12685 PF13537 Glutamine amidotransferase domain NJR02_12685 PF00733 Asparagine synthase NJR02_12700 PF14497 Glutathione S-transferase, C-terminal domain NJR02_12700 PF02798 Glutathione S-transferase, N-terminal domain NJR02_12710 PF04209 homogentisate 1,2-dioxygenase NJR02_12715 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NJR02_12725 PF00849 RNA pseudouridylate synthase NJR02_12730 PF00990 Diguanylate cyclase, GGDEF domain NJR02_12730 PF00563 EAL domain NJR02_12730 PF13426 PAS domain NJR02_12735 PF08447 PAS fold NJR02_12735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJR02_12745 PF00285 Citrate synthase, C-terminal domain NJR02_12750 PF00694 Aconitase C-terminal domain NJR02_12750 PF00330 Aconitase family (aconitate hydratase) NJR02_12755 PF04303 PrpF protein NJR02_12765 PF07715 TonB-dependent Receptor Plug Domain NJR02_12765 PF07660 Secretin and TonB N terminus short domain NJR02_12765 PF00593 TonB dependent receptor NJR02_12775 PF01027 Inhibitor of apoptosis-promoting Bax1 NJR02_12780 PF12805 FUSC-like inner membrane protein yccS NJR02_12785 PF04358 DsrC like protein NJR02_12790 PF05036 Sporulation related domain NJR02_12795 PF02875 Mur ligase family, glutamate ligase domain NJR02_12795 PF08245 Mur ligase middle domain NJR02_12800 PF01039 Carboxyl transferase domain NJR02_12800 PF17848 Acetyl-coA carboxylase zinc finger domain NJR02_12805 PF01416 tRNA pseudouridine synthase NJR02_12815 PF01118 Semialdehyde dehydrogenase, NAD binding domain NJR02_12815 PF02774 Semialdehyde dehydrogenase, dimerisation domain NJR02_12820 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NJR02_12820 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NJR02_12820 PF11890 Domain of unknown function (DUF3410) NJR02_12830 PF03180 NLPA lipoprotein NJR02_12850 PF00005 ABC transporter NJR02_12855 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NJR02_12855 PF02896 PEP-utilising enzyme, TIM barrel domain NJR02_12855 PF00391 PEP-utilising enzyme, mobile domain NJR02_12860 PF03618 Kinase/pyrophosphorylase NJR02_12870 PF00324 Amino acid permease NJR02_12910 PF00664 ABC transporter transmembrane region NJR02_12910 PF00005 ABC transporter NJR02_12910 PF03412 Peptidase C39 family NJR02_12915 PF16199 Radical_SAM C-terminal domain NJR02_12915 PF04055 Radical SAM superfamily NJR02_12920 PF04898 Glutamate synthase central domain NJR02_12920 PF01493 GXGXG motif NJR02_12920 PF00310 Glutamine amidotransferases class-II NJR02_12920 PF01645 Conserved region in glutamate synthase NJR02_12925 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NJR02_12925 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJR02_12930 PF00005 ABC transporter NJR02_12935 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_12940 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJR02_12965 PF14521 Lysine-specific metallo-endopeptidase NJR02_12975 PF00270 DEAD/DEAH box helicase NJR02_12975 PF00271 Helicase conserved C-terminal domain NJR02_12990 PF08378 Nuclease-related domain NJR02_13010 PF07759 Protein of unknown function (DUF1615) NJR02_13015 PF00990 Diguanylate cyclase, GGDEF domain NJR02_13020 PF08502 LeuA allosteric (dimerisation) domain NJR02_13020 PF00682 HMGL-like NJR02_13025 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NJR02_13025 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NJR02_13025 PF02142 MGS-like domain NJR02_13030 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NJR02_13030 PF00117 Glutamine amidotransferase class-I NJR02_13035 PF05173 Dihydrodipicolinate reductase, C-terminus NJR02_13035 PF01113 Dihydrodipicolinate reductase, N-terminus NJR02_13045 PF01812 5-formyltetrahydrofolate cyclo-ligase family NJR02_13050 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NJR02_13055 PF01842 ACT domain NJR02_13055 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NJR02_13055 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NJR02_13060 PF01219 Prokaryotic diacylglycerol kinase NJR02_13065 PF00793 DAHP synthetase I family NJR02_13070 PF00005 ABC transporter NJR02_13075 PF01032 FecCD transport family NJR02_13090 PF00437 Type II/IV secretion system protein NJR02_13100 PF17910 FeoB cytosolic helical domain NJR02_13100 PF07664 Ferrous iron transport protein B C terminus NJR02_13100 PF07670 Nucleoside recognition NJR02_13100 PF02421 Ferrous iron transport protein B NJR02_13110 PF01253 Translation initiation factor SUI1 NJR02_13115 PF01169 Uncharacterized protein family UPF0016 NJR02_13150 PF13185 GAF domain NJR02_13150 PF00990 Diguanylate cyclase, GGDEF domain NJR02_13155 PF05598 Transposase domain (DUF772) NJR02_13155 PF01609 Transposase DDE domain NJR02_13160 PF01406 tRNA synthetases class I (C) catalytic domain NJR02_13160 PF09190 DALR domain NJR02_13165 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NJR02_13175 PF00149 Calcineurin-like phosphoesterase NJR02_13180 PF04226 Transglycosylase associated protein NJR02_13185 PF16925 Tetracyclin repressor-like, C-terminal domain NJR02_13185 PF00440 Bacterial regulatory proteins, tetR family NJR02_13190 PF08240 Alcohol dehydrogenase GroES-like domain NJR02_13190 PF00107 Zinc-binding dehydrogenase NJR02_13205 PF13426 PAS domain NJR02_13205 PF08447 PAS fold NJR02_13205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJR02_13210 PF13784 Fic/DOC family N-terminal NJR02_13210 PF02661 Fic/DOC family NJR02_13220 PF05598 Transposase domain (DUF772) NJR02_13220 PF01609 Transposase DDE domain NJR02_13255 PF00589 Phage integrase family NJR02_13275 PF01066 CDP-alcohol phosphatidyltransferase NJR02_13280 PF08459 UvrC Helix-hairpin-helix N-terminal NJR02_13280 PF02151 UvrB/uvrC motif NJR02_13280 PF01541 GIY-YIG catalytic domain NJR02_13285 PF00196 Bacterial regulatory proteins, luxR family NJR02_13285 PF00072 Response regulator receiver domain NJR02_13290 PF02348 Cytidylyltransferase NJR02_13295 PF03966 Trm112p-like protein NJR02_13300 PF02606 Tetraacyldisaccharide-1-P 4'-kinase NJR02_13305 PF00005 ABC transporter NJR02_13305 PF00664 ABC transporter transmembrane region NJR02_13310 PF03772 Competence protein NJR02_13310 PF00753 Metallo-beta-lactamase superfamily NJR02_13325 PF05872 Bacterial protein of unknown function (DUF853) NJR02_13330 PF00155 Aminotransferase class I and II NJR02_13340 PF13609 Gram-negative porin NJR02_13345 PF06733 DEAD_2 NJR02_13345 PF13307 Helicase C-terminal domain NJR02_13355 PF00850 Histone deacetylase domain NJR02_13360 PF07690 Major Facilitator Superfamily NJR02_13365 PF01926 50S ribosome-binding GTPase NJR02_13370 PF00245 Alkaline phosphatase NJR02_13375 PF00245 Alkaline phosphatase NJR02_13390 PF01272 Transcription elongation factor, GreA/GreB, C-term NJR02_13390 PF14760 Rnk N-terminus NJR02_13395 PF00990 Diguanylate cyclase, GGDEF domain NJR02_13395 PF08448 PAS fold NJR02_13400 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJR02_13405 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_13410 PF00005 ABC transporter NJR02_13415 PF04116 Fatty acid hydroxylase superfamily NJR02_13420 PF13520 Amino acid permease NJR02_13425 PF02574 Homocysteine S-methyltransferase NJR02_13425 PF02607 B12 binding domain NJR02_13425 PF02965 Vitamin B12 dependent methionine synthase, activation domain NJR02_13425 PF00809 Pterin binding enzyme NJR02_13425 PF02310 B12 binding domain NJR02_13435 PF03471 Transporter associated domain NJR02_13435 PF01595 Cyclin M transmembrane N-terminal domain NJR02_13435 PF00571 CBS domain NJR02_13440 PF01895 PhoU domain NJR02_13445 PF00005 ABC transporter NJR02_13450 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_13455 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_13460 PF14437 MafB19-like deaminase NJR02_13475 PF01274 Malate synthase NJR02_13480 PF00463 Isocitrate lyase family NJR02_13485 PF00308 Bacterial dnaA protein NJR02_13500 PF02769 AIR synthase related protein, C-terminal domain NJR02_13500 PF00586 AIR synthase related protein, N-terminal domain NJR02_13505 PF00551 Formyl transferase NJR02_13510 PF01784 NIF3 (NGG1p interacting factor 3) NJR02_13515 PF00158 Sigma-54 interaction domain NJR02_13515 PF00072 Response regulator receiver domain NJR02_13515 PF02954 Bacterial regulatory protein, Fis family NJR02_13520 PF13188 PAS domain NJR02_13520 PF00512 His Kinase A (phospho-acceptor) domain NJR02_13520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_13525 PF00158 Sigma-54 interaction domain NJR02_13525 PF06490 Flagellar regulatory protein FleQ NJR02_13525 PF02954 Bacterial regulatory protein, Fis family NJR02_13535 PF01842 ACT domain NJR02_13540 PF13090 Polyphosphate kinase C-terminal domain 2 NJR02_13540 PF17941 Polyphosphate kinase C-terminal domain 1 NJR02_13540 PF13089 Polyphosphate kinase N-terminal domain NJR02_13540 PF02503 Polyphosphate kinase middle domain NJR02_13545 PF02541 Ppx/GppA phosphatase family NJR02_13550 PF00571 CBS domain NJR02_13550 PF01769 Divalent cation transporter NJR02_13550 PF03448 MgtE intracellular N domain NJR02_13560 PF07196 Flagellin hook IN motif NJR02_13560 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NJR02_13565 PF10135 Rod binding protein NJR02_13565 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NJR02_13570 PF02119 Flagellar P-ring protein NJR02_13575 PF02107 Flagellar L-ring protein NJR02_13580 PF00460 Flagella basal body rod protein NJR02_13580 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NJR02_13585 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NJR02_13585 PF00460 Flagella basal body rod protein NJR02_13590 PF07559 Flagellar basal body protein FlaE NJR02_13590 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NJR02_13590 PF00460 Flagella basal body rod protein NJR02_13600 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NJR02_13600 PF00460 Flagella basal body rod protein NJR02_13605 PF00460 Flagella basal body rod protein NJR02_13610 PF01739 CheR methyltransferase, SAM binding domain NJR02_13610 PF03705 CheR methyltransferase, all-alpha domain NJR02_13615 PF00072 Response regulator receiver domain NJR02_13615 PF01584 CheW-like domain NJR02_13620 PF13144 Chaperone for flagella basal body P-ring formation NJR02_13635 PF12850 Calcineurin-like phosphoesterase superfamily domain NJR02_13640 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NJR02_13650 PF00849 RNA pseudouridylate synthase NJR02_13650 PF01479 S4 domain NJR02_13655 PF01966 HD domain NJR02_13665 PF00892 EamA-like transporter family NJR02_13670 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NJR02_13695 PF00313 'Cold-shock' DNA-binding domain NJR02_13700 PF02817 e3 binding domain NJR02_13700 PF00364 Biotin-requiring enzyme NJR02_13700 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NJR02_13705 PF02780 Transketolase, C-terminal domain NJR02_13705 PF02779 Transketolase, pyrimidine binding domain NJR02_13710 PF00676 Dehydrogenase E1 component NJR02_13715 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family NJR02_13725 PF05472 DNA replication terminus site-binding protein (Ter protein) NJR02_13730 PF00176 SNF2 family N-terminal domain NJR02_13730 PF00271 Helicase conserved C-terminal domain NJR02_13730 PF04434 SWIM zinc finger NJR02_13735 PF04337 Protein of unknown function, DUF480 NJR02_13745 PF02706 Chain length determinant protein NJR02_13750 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase NJR02_13755 PF00483 Nucleotidyl transferase NJR02_13760 PF04321 RmlD substrate binding domain NJR02_13765 PF02397 Bacterial sugar transferase NJR02_13770 PF00535 Glycosyl transferase family 2 NJR02_13795 PF02348 Cytidylyltransferase NJR02_13795 PF13472 GDSL-like Lipase/Acylhydrolase family NJR02_13800 PF00483 Nucleotidyl transferase NJR02_13810 PF08666 SAF domain NJR02_13810 PF03102 NeuB family NJR02_13815 PF02350 UDP-N-acetylglucosamine 2-epimerase NJR02_13820 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NJR02_13825 PF02719 Polysaccharide biosynthesis protein NJR02_13830 PF16363 GDP-mannose 4,6 dehydratase NJR02_13835 PF00072 Response regulator receiver domain NJR02_13835 PF00486 Transcriptional regulatory protein, C terminal NJR02_13840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_13845 PF02685 Glucokinase NJR02_13850 PF01418 Helix-turn-helix domain, rpiR family NJR02_13850 PF01380 SIS domain NJR02_13855 PF00224 Pyruvate kinase, barrel domain NJR02_13855 PF02887 Pyruvate kinase, alpha/beta domain NJR02_13865 PF00873 AcrB/AcrD/AcrF family NJR02_13870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NJR02_13870 PF02770 Acyl-CoA dehydrogenase, middle domain NJR02_13870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NJR02_13870 PF09317 Domain of unknown function (DUF1974) NJR02_13875 PF00440 Bacterial regulatory proteins, tetR family NJR02_13895 PF02321 Outer membrane efflux protein NJR02_13900 PF00873 AcrB/AcrD/AcrF family NJR02_13905 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NJR02_13905 PF00529 HlyD membrane-fusion protein of T1SS NJR02_13910 PF00440 Bacterial regulatory proteins, tetR family NJR02_13910 PF08361 MAATS-type transcriptional repressor, C-terminal region NJR02_13935 PF01479 S4 domain NJR02_13935 PF00849 RNA pseudouridylate synthase NJR02_13940 PF04079 Segregation and condensation complex subunit ScpB NJR02_13945 PF02616 Segregation and condensation protein ScpA NJR02_13950 PF01300 Telomere recombination NJR02_13955 PF02811 PHP domain NJR02_13960 PF00425 chorismate binding enzyme NJR02_13960 PF04715 Anthranilate synthase component I, N terminal region NJR02_13965 PF00117 Glutamine amidotransferase class-I NJR02_13965 PF02885 Glycosyl transferase family, helical bundle domain NJR02_13965 PF00591 Glycosyl transferase family, a/b domain NJR02_13970 PF00591 Glycosyl transferase family, a/b domain NJR02_13970 PF02885 Glycosyl transferase family, helical bundle domain NJR02_13975 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NJR02_13975 PF00218 Indole-3-glycerol phosphate synthase NJR02_13980 PF00291 Pyridoxal-phosphate dependent enzyme NJR02_13985 PF00290 Tryptophan synthase alpha chain NJR02_13995 PF01609 Transposase DDE domain NJR02_13995 PF05598 Transposase domain (DUF772) NJR02_14035 PF03466 LysR substrate binding domain NJR02_14035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_14045 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NJR02_14050 PF00005 ABC transporter NJR02_14055 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_14060 PF02668 Taurine catabolism dioxygenase TauD, TfdA family NJR02_14065 PF07237 Protein of unknown function (DUF1428) NJR02_14070 PF07690 Major Facilitator Superfamily NJR02_14075 PF01040 UbiA prenyltransferase family NJR02_14080 PF03626 Prokaryotic Cytochrome C oxidase subunit IV NJR02_14085 PF00510 Cytochrome c oxidase subunit III NJR02_14090 PF00115 Cytochrome C and Quinol oxidase polypeptide I NJR02_14095 PF06481 COX Aromatic Rich Motif NJR02_14095 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NJR02_14105 PF02627 Carboxymuconolactone decarboxylase family NJR02_14110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_14110 PF03466 LysR substrate binding domain NJR02_14120 PF01156 Inosine-uridine preferring nucleoside hydrolase NJR02_14130 PF01047 MarR family NJR02_14145 PF00127 Copper binding proteins, plastocyanin/azurin family NJR02_14150 PF02424 ApbE family NJR02_14160 PF00072 Response regulator receiver domain NJR02_14170 PF03372 Endonuclease/Exonuclease/phosphatase family NJR02_14175 PF01610 Transposase NJR02_14175 PF13542 Helix-turn-helix domain of transposase family ISL3 NJR02_14175 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NJR02_14185 PF00529 HlyD membrane-fusion protein of T1SS NJR02_14185 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NJR02_14190 PF00873 AcrB/AcrD/AcrF family NJR02_14205 PF03099 Biotin/lipoate A/B protein ligase family NJR02_14205 PF10437 Bacterial lipoate protein ligase C-terminus NJR02_14210 PF00990 Diguanylate cyclase, GGDEF domain NJR02_14210 PF03707 Bacterial signalling protein N terminal repeat NJR02_14210 PF00563 EAL domain NJR02_14215 PF00873 AcrB/AcrD/AcrF family NJR02_14230 PF04143 Sulphur transport NJR02_14235 PF01022 Bacterial regulatory protein, arsR family NJR02_14245 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJR02_14255 PF02308 MgtC family NJR02_14260 PF13407 Periplasmic binding protein domain NJR02_14260 PF00356 Bacterial regulatory proteins, lacI family NJR02_14265 PF00251 Glycosyl hydrolases family 32 N-terminal domain NJR02_14265 PF08244 Glycosyl hydrolases family 32 C terminal NJR02_14270 PF02378 Phosphotransferase system, EIIC NJR02_14270 PF00367 phosphotransferase system, EIIB NJR02_14275 PF00294 pfkB family carbohydrate kinase NJR02_14280 PF11471 Maltoporin periplasmic N-terminal extension NJR02_14280 PF02264 LamB porin NJR02_14285 PF00226 DnaJ domain NJR02_14285 PF00684 DnaJ central domain NJR02_14285 PF01556 DnaJ C terminal domain NJR02_14290 PF00012 Hsp70 protein NJR02_14295 PF01025 GrpE NJR02_14300 PF01513 ATP-NAD kinase NJR02_14305 PF00990 Diguanylate cyclase, GGDEF domain NJR02_14305 PF17158 Membrane-associated sensor, integral membrane domain NJR02_14310 PF02463 RecF/RecN/SMC N terminal domain NJR02_14320 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NJR02_14325 PF12704 MacB-like periplasmic core domain NJR02_14325 PF00005 ABC transporter NJR02_14325 PF02687 FtsX-like permease family NJR02_14330 PF02321 Outer membrane efflux protein NJR02_14335 PF08021 Siderophore-interacting FAD-binding domain NJR02_14335 PF04954 Siderophore-interacting protein NJR02_14340 PF00793 DAHP synthetase I family NJR02_14345 PF00816 H-NS histone family NJR02_14350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_14350 PF03466 LysR substrate binding domain NJR02_14355 PF00291 Pyridoxal-phosphate dependent enzyme NJR02_14365 PF00180 Isocitrate/isopropylmalate dehydrogenase NJR02_14400 PF00583 Acetyltransferase (GNAT) family NJR02_14405 PF00849 RNA pseudouridylate synthase NJR02_14410 PF00293 NUDIX domain NJR02_14420 PF04356 Protein of unknown function (DUF489) NJR02_14425 PF08328 Adenylosuccinate lyase C-terminal NJR02_14425 PF00206 Lyase NJR02_14430 PF08007 Cupin superfamily protein NJR02_14435 PF00224 Pyruvate kinase, barrel domain NJR02_14435 PF02887 Pyruvate kinase, alpha/beta domain NJR02_14440 PF00924 Mechanosensitive ion channel NJR02_14440 PF12795 Mechanosensitive ion channel porin domain NJR02_14440 PF12794 Mechanosensitive ion channel inner membrane domain 1 NJR02_14445 PF01810 LysE type translocator NJR02_14450 PF10282 Lactonase, 7-bladed beta-propeller NJR02_14460 PF00860 Permease family NJR02_14470 PF00390 Malic enzyme, N-terminal domain NJR02_14470 PF03949 Malic enzyme, NAD binding domain NJR02_14475 PF12804 MobA-like NTP transferase domain NJR02_14480 PF03205 Molybdopterin guanine dinucleotide synthesis protein B NJR02_14485 PF04632 Fusaric acid resistance protein family NJR02_14500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJR02_14500 PF08447 PAS fold NJR02_14500 PF13426 PAS domain NJR02_14520 PF02028 BCCT, betaine/carnitine/choline family transporter NJR02_14540 PF13474 SnoaL-like domain NJR02_14545 PF14821 Threonine synthase N terminus NJR02_14545 PF00291 Pyridoxal-phosphate dependent enzyme NJR02_14550 PF00288 GHMP kinases N terminal domain NJR02_14550 PF08544 GHMP kinases C terminal NJR02_14555 PF03447 Homoserine dehydrogenase, NAD binding domain NJR02_14555 PF13840 ACT domain NJR02_14555 PF01842 ACT domain NJR02_14555 PF00696 Amino acid kinase family NJR02_14555 PF00742 Homoserine dehydrogenase NJR02_14560 PF00588 SpoU rRNA Methylase family NJR02_14565 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) NJR02_14580 PF03737 Aldolase/RraA NJR02_14590 PF00486 Transcriptional regulatory protein, C terminal NJR02_14590 PF00072 Response regulator receiver domain NJR02_14605 PF00664 ABC transporter transmembrane region NJR02_14605 PF00005 ABC transporter NJR02_14610 PF00005 ABC transporter NJR02_14610 PF00664 ABC transporter transmembrane region NJR02_14630 PF01980 tRNA-methyltransferase O NJR02_14630 PF18389 TrmO C-terminal domain NJR02_14635 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NJR02_14635 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NJR02_14645 PF00004 ATPase family associated with various cellular activities (AAA) NJR02_14645 PF17862 AAA+ lid domain NJR02_14645 PF06480 FtsH Extracellular NJR02_14645 PF01434 Peptidase family M41 NJR02_14650 PF00291 Pyridoxal-phosphate dependent enzyme NJR02_14655 PF00381 PTS HPr component phosphorylation site NJR02_14660 PF02896 PEP-utilising enzyme, TIM barrel domain NJR02_14660 PF05524 PEP-utilising enzyme, N-terminal NJR02_14660 PF00391 PEP-utilising enzyme, mobile domain NJR02_14665 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NJR02_14670 PF01292 Prokaryotic cytochrome b561 NJR02_14680 PF13476 AAA domain NJR02_14685 PF00149 Calcineurin-like phosphoesterase NJR02_14685 PF12320 Type 5 capsule protein repressor C-terminal domain NJR02_14690 PF00583 Acetyltransferase (GNAT) family NJR02_14695 PF04381 Putative exonuclease, RdgC NJR02_14710 PF02254 TrkA-N domain NJR02_14710 PF00999 Sodium/hydrogen exchanger family NJR02_14715 PF00158 Sigma-54 interaction domain NJR02_14715 PF02954 Bacterial regulatory protein, Fis family NJR02_14715 PF00072 Response regulator receiver domain NJR02_14750 PF01266 FAD dependent oxidoreductase NJR02_14755 PF07883 Cupin domain NJR02_14755 PF01381 Helix-turn-helix NJR02_14760 PF00171 Aldehyde dehydrogenase family NJR02_14765 PF00202 Aminotransferase class-III NJR02_14775 PF00324 Amino acid permease NJR02_14780 PF13520 Amino acid permease NJR02_14790 PF02690 Na+/Pi-cotransporter NJR02_14795 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NJR02_14795 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NJR02_14800 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase NJR02_14805 PF00512 His Kinase A (phospho-acceptor) domain NJR02_14805 PF01627 Hpt domain NJR02_14805 PF00989 PAS fold NJR02_14805 PF00072 Response regulator receiver domain NJR02_14805 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJR02_14805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_14810 PF01627 Hpt domain NJR02_14810 PF00989 PAS fold NJR02_14810 PF00512 His Kinase A (phospho-acceptor) domain NJR02_14810 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJR02_14810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_14810 PF00072 Response regulator receiver domain NJR02_14815 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJR02_14815 PF00072 Response regulator receiver domain NJR02_14815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_14815 PF00512 His Kinase A (phospho-acceptor) domain NJR02_14815 PF01627 Hpt domain NJR02_14820 PF10725 Protein of unknown function (DUF2517) NJR02_14840 PF00072 Response regulator receiver domain NJR02_14840 PF09308 LuxQ, periplasmic NJR02_14840 PF00512 His Kinase A (phospho-acceptor) domain NJR02_14840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_14845 PF00589 Phage integrase family NJR02_14845 PF13356 Arm DNA-binding domain NJR02_14880 PF01926 50S ribosome-binding GTPase NJR02_14880 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NJR02_14890 PF08447 PAS fold NJR02_14890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJR02_14890 PF13426 PAS domain NJR02_14920 PF01609 Transposase DDE domain NJR02_14920 PF05598 Transposase domain (DUF772) NJR02_14925 PF01609 Transposase DDE domain NJR02_14925 PF05598 Transposase domain (DUF772) NJR02_14950 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A NJR02_14955 PF00145 C-5 cytosine-specific DNA methylase NJR02_14975 PF08676 MutL C terminal dimerisation domain NJR02_14975 PF01119 DNA mismatch repair protein, C-terminal domain NJR02_14980 PF04545 Sigma-70, region 4 NJR02_14980 PF00140 Sigma-70 factor, region 1.2 NJR02_14980 PF03979 Sigma-70 factor, region 1.1 NJR02_14980 PF04546 Sigma-70, non-essential region NJR02_14980 PF04542 Sigma-70 region 2 NJR02_14980 PF04539 Sigma-70 region 3 NJR02_14985 PF05598 Transposase domain (DUF772) NJR02_14985 PF01609 Transposase DDE domain NJR02_15015 PF17969 L,D-transpeptidase C-terminal domain NJR02_15015 PF01476 LysM domain NJR02_15015 PF03734 L,D-transpeptidase catalytic domain NJR02_15025 PF01575 MaoC like domain NJR02_15030 PF05971 RNA methyltransferase NJR02_15035 PF00877 NlpC/P60 family NJR02_15040 PF01648 4'-phosphopantetheinyl transferase superfamily NJR02_15045 PF00085 Thioredoxin NJR02_15055 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NJR02_15060 PF00551 Formyl transferase NJR02_15060 PF01842 ACT domain NJR02_15070 PF13091 PLD-like domain NJR02_15070 PF13396 Phospholipase_D-nuclease N-terminal NJR02_15085 PF01551 Peptidase family M23 NJR02_15085 PF01464 Transglycosylase SLT domain NJR02_15085 PF10145 Phage-related minor tail protein NJR02_15105 PF02075 Crossover junction endodeoxyribonuclease RuvC NJR02_15110 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NJR02_15135 PF01609 Transposase DDE domain NJR02_15135 PF05598 Transposase domain (DUF772) NJR02_15140 PF04055 Radical SAM superfamily NJR02_15140 PF08497 Radical SAM N-terminal NJR02_15140 PF11842 Domain of unknown function (DUF3362) NJR02_15145 PF00873 AcrB/AcrD/AcrF family NJR02_15155 PF17158 Membrane-associated sensor, integral membrane domain NJR02_15155 PF00990 Diguanylate cyclase, GGDEF domain NJR02_15160 PF01734 Patatin-like phospholipase NJR02_15165 PF00209 Sodium:neurotransmitter symporter family NJR02_15180 PF00691 OmpA family NJR02_15180 PF01389 OmpA-like transmembrane domain NJR02_15185 PF00691 OmpA family NJR02_15185 PF01389 OmpA-like transmembrane domain NJR02_15190 PF01389 OmpA-like transmembrane domain NJR02_15190 PF00691 OmpA family NJR02_15195 PF03949 Malic enzyme, NAD binding domain NJR02_15195 PF00390 Malic enzyme, N-terminal domain NJR02_15200 PF12833 Helix-turn-helix domain NJR02_15205 PF01554 MatE NJR02_15210 PF10692 Protein of unknown function (DUF2498) NJR02_15215 PF00990 Diguanylate cyclase, GGDEF domain NJR02_15215 PF00072 Response regulator receiver domain NJR02_15220 PF00860 Permease family NJR02_15230 PF01235 Sodium:alanine symporter family NJR02_15235 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NJR02_15235 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NJR02_15240 PF01699 Sodium/calcium exchanger protein NJR02_15245 PF08534 Redoxin NJR02_15250 PF00293 NUDIX domain NJR02_15260 PF00005 ABC transporter NJR02_15265 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_15270 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_15275 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJR02_15290 PF00005 ABC transporter NJR02_15295 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NJR02_15295 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NJR02_15300 PF03932 CutC family NJR02_15305 PF00480 ROK family NJR02_15315 PF01435 Peptidase family M48 NJR02_15320 PF12849 PBP superfamily domain NJR02_15325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_15325 PF00989 PAS fold NJR02_15325 PF00512 His Kinase A (phospho-acceptor) domain NJR02_15325 PF11808 Phosphate regulon sensor protein PhoR NJR02_15330 PF00072 Response regulator receiver domain NJR02_15330 PF00486 Transcriptional regulatory protein, C terminal NJR02_15335 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NJR02_15340 PF00990 Diguanylate cyclase, GGDEF domain NJR02_15340 PF07694 5TMR of 5TMR-LYT NJR02_15350 PF01590 GAF domain NJR02_15350 PF02954 Bacterial regulatory protein, Fis family NJR02_15350 PF00158 Sigma-54 interaction domain NJR02_15355 PF00171 Aldehyde dehydrogenase family NJR02_15365 PF00892 EamA-like transporter family NJR02_15370 PF00248 Aldo/keto reductase family NJR02_15380 PF12431 Transcriptional regulator NJR02_15380 PF00072 Response regulator receiver domain NJR02_15385 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain NJR02_15385 PF17203 Single cache domain 3 NJR02_15385 PF00989 PAS fold NJR02_15385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_15390 PF01047 MarR family NJR02_15395 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NJR02_15395 PF00529 HlyD membrane-fusion protein of T1SS NJR02_15415 PF01679 Proteolipid membrane potential modulator NJR02_15425 PF03477 ATP cone domain NJR02_15425 PF13597 Anaerobic ribonucleoside-triphosphate reductase NJR02_15435 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NJR02_15435 PF03120 NAD-dependent DNA ligase OB-fold domain NJR02_15435 PF01653 NAD-dependent DNA ligase adenylation domain NJR02_15435 PF00533 BRCA1 C Terminus (BRCT) domain NJR02_15435 PF12826 Helix-hairpin-helix motif NJR02_15440 PF04354 ZipA, C-terminal FtsZ-binding domain NJR02_15445 PF06470 SMC proteins Flexible Hinge Domain NJR02_15445 PF02463 RecF/RecN/SMC N terminal domain NJR02_15455 PF03458 UPF0126 domain NJR02_15465 PF05951 Bacterial protein of unknown function (DUF882) NJR02_15470 PF01471 Putative peptidoglycan binding domain NJR02_15470 PF03734 L,D-transpeptidase catalytic domain NJR02_15485 PF00535 Glycosyl transferase family 2 NJR02_15500 PF00128 Alpha amylase, catalytic domain NJR02_15510 PF00072 Response regulator receiver domain NJR02_15510 PF00196 Bacterial regulatory proteins, luxR family NJR02_15535 PF00990 Diguanylate cyclase, GGDEF domain NJR02_15540 PF01171 PP-loop family NJR02_15540 PF09179 TilS substrate binding domain NJR02_15540 PF11734 TilS substrate C-terminal domain NJR02_15545 PF01431 Peptidase family M13 NJR02_15545 PF05649 Peptidase family M13 NJR02_15555 PF16326 ABC transporter C-terminal domain NJR02_15555 PF00005 ABC transporter NJR02_15555 PF12848 ABC transporter NJR02_15565 PF13520 Amino acid permease NJR02_15575 PF03466 LysR substrate binding domain NJR02_15575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_15585 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NJR02_15590 PF07733 Bacterial DNA polymerase III alpha NTPase domain NJR02_15590 PF14579 Helix-hairpin-helix motif NJR02_15590 PF02811 PHP domain NJR02_15590 PF01336 OB-fold nucleic acid binding domain NJR02_15590 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NJR02_15595 PF01351 Ribonuclease HII NJR02_15600 PF02684 Lipid-A-disaccharide synthetase NJR02_15605 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 NJR02_15605 PF00132 Bacterial transferase hexapeptide (six repeats) NJR02_15610 PF07977 FabA-like domain NJR02_15615 PF00132 Bacterial transferase hexapeptide (six repeats) NJR02_15615 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD NJR02_15620 PF03938 Outer membrane protein (OmpH-like) NJR02_15625 PF01103 Surface antigen NJR02_15625 PF07244 Surface antigen variable number repeat NJR02_15630 PF17820 PDZ domain NJR02_15630 PF02163 Peptidase family M50 NJR02_15635 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NJR02_15635 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NJR02_15635 PF13288 DXP reductoisomerase C-terminal domain NJR02_15645 PF01255 Putative undecaprenyl diphosphate synthase NJR02_15650 PF01765 Ribosome recycling factor NJR02_15655 PF00696 Amino acid kinase family NJR02_15660 PF00889 Elongation factor TS NJR02_15665 PF00318 Ribosomal protein S2 NJR02_15670 PF00557 Metallopeptidase family M24 NJR02_15675 PF01842 ACT domain NJR02_15675 PF08335 GlnD PII-uridylyltransferase NJR02_15675 PF01966 HD domain NJR02_15675 PF01909 Nucleotidyltransferase domain NJR02_15680 PF00132 Bacterial transferase hexapeptide (six repeats) NJR02_15680 PF14602 Hexapeptide repeat of succinyl-transferase NJR02_15680 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal NJR02_15685 PF11944 Protein of unknown function (DUF3461) NJR02_15690 PF00367 phosphotransferase system, EIIB NJR02_15690 PF02378 Phosphotransferase system, EIIC NJR02_15695 PF07148 Maltose operon periplasmic protein precursor (MalM) NJR02_15700 PF02264 LamB porin NJR02_15710 PF00258 Flavodoxin NJR02_15715 PF00849 RNA pseudouridylate synthase NJR02_15720 PF04287 tRNA pseudouridine synthase C NJR02_15745 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) NJR02_15750 PF07348 Syd protein (SUKH-2) NJR02_15755 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term NJR02_15755 PF14489 QueF-like protein NJR02_15765 PF00990 Diguanylate cyclase, GGDEF domain NJR02_15770 PF03641 Possible lysine decarboxylase NJR02_15770 PF11892 Domain of unknown function (DUF3412) NJR02_15770 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases NJR02_15775 PF01367 5'-3' exonuclease, C-terminal SAM fold NJR02_15775 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NJR02_15780 PF00180 Isocitrate/isopropylmalate dehydrogenase NJR02_15780 PF18324 Hypothetical protein TT1725 NJR02_15790 PF18125 RlmM ferredoxin-like domain NJR02_15790 PF01728 FtsJ-like methyltransferase NJR02_15805 PF03466 LysR substrate binding domain NJR02_15805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_15810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJR02_15810 PF00672 HAMP domain NJR02_15820 PF05598 Transposase domain (DUF772) NJR02_15820 PF01609 Transposase DDE domain NJR02_15825 PF00817 impB/mucB/samB family NJR02_15825 PF11799 impB/mucB/samB family C-terminal domain NJR02_15825 PF11798 IMS family HHH motif NJR02_15840 PF02424 ApbE family NJR02_15845 PF00175 Oxidoreductase NAD-binding domain NJR02_15845 PF00970 Oxidoreductase FAD-binding domain NJR02_15845 PF00111 2Fe-2S iron-sulfur cluster binding domain NJR02_15850 PF02508 Rnf-Nqr subunit, membrane protein NJR02_15855 PF02508 Rnf-Nqr subunit, membrane protein NJR02_15860 PF04205 FMN-binding domain NJR02_15865 PF03116 NQR2, RnfD, RnfE family NJR02_15870 PF11973 NQRA C-terminal domain NJR02_15870 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) NJR02_15875 PF01722 BolA-like protein NJR02_15880 PF05175 Methyltransferase small domain NJR02_15890 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NJR02_15900 PF07690 Major Facilitator Superfamily NJR02_15905 PF03502 Nucleoside-specific channel-forming protein, Tsx NJR02_15910 PF04461 Protein of unknown function (DUF520) NJR02_15915 PF02558 Ketopantoate reductase PanE/ApbA NJR02_15915 PF08546 Ketopantoate reductase PanE/ApbA C terminal NJR02_15920 PF01965 DJ-1/PfpI family NJR02_15925 PF01609 Transposase DDE domain NJR02_15925 PF05598 Transposase domain (DUF772) NJR02_15930 PF05598 Transposase domain (DUF772) NJR02_15930 PF01609 Transposase DDE domain NJR02_15940 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit NJR02_15945 PF00722 Glycosyl hydrolases family 16 NJR02_15960 PF16363 GDP-mannose 4,6 dehydratase NJR02_15965 PF00175 Oxidoreductase NAD-binding domain NJR02_15965 PF00042 Globin NJR02_15965 PF00970 Oxidoreductase FAD-binding domain NJR02_15970 PF03063 Prismane/CO dehydrogenase family NJR02_15975 PF00210 Ferritin-like domain NJR02_16015 PF00106 short chain dehydrogenase NJR02_16025 PF00875 DNA photolyase NJR02_16025 PF03441 FAD binding domain of DNA photolyase NJR02_16030 PF13411 MerR HTH family regulatory protein NJR02_16035 PF08349 Protein of unknown function (DUF1722) NJR02_16060 PF01817 Chorismate mutase type II NJR02_16060 PF00800 Prephenate dehydratase NJR02_16090 PF07995 Glucose / Sorbosone dehydrogenase NJR02_16100 PF00455 DeoR C terminal sensor domain NJR02_16100 PF08220 DeoR-like helix-turn-helix domain NJR02_16105 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NJR02_16105 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NJR02_16110 PF17042 Nucleotide-binding C-terminal domain NJR02_16110 PF07005 Sugar-binding N-terminal domain NJR02_16115 PF00596 Class II Aldolase and Adducin N-terminal domain NJR02_16120 PF01261 Xylose isomerase-like TIM barrel NJR02_16125 PF01370 NAD dependent epimerase/dehydratase family NJR02_16130 PF02447 GntP family permease NJR02_16140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJR02_16145 PF03573 outer membrane porin, OprD family NJR02_16150 PF00106 short chain dehydrogenase NJR02_16175 PF02074 Carboxypeptidase Taq (M32) metallopeptidase NJR02_16180 PF02805 Metal binding domain of Ada NJR02_16180 PF12833 Helix-turn-helix domain NJR02_16180 PF06029 AlkA N-terminal domain NJR02_16180 PF00730 HhH-GPD superfamily base excision DNA repair protein NJR02_16185 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NJR02_16185 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NJR02_16195 PF06906 Protein of unknown function (DUF1272) NJR02_16205 PF12392 Collagenase NJR02_16205 PF01136 Peptidase family U32 NJR02_16210 PF01810 LysE type translocator NJR02_16215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_16215 PF03466 LysR substrate binding domain NJR02_16220 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NJR02_16220 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NJR02_16255 PF01568 Molydopterin dinucleotide binding domain NJR02_16255 PF00384 Molybdopterin oxidoreductase NJR02_16255 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NJR02_16260 PF03916 Polysulphide reductase, NrfD NJR02_16265 PF13247 4Fe-4S dicluster domain NJR02_16270 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NJR02_16270 PF01610 Transposase NJR02_16270 PF13542 Helix-turn-helix domain of transposase family ISL3 NJR02_16275 PF00989 PAS fold NJR02_16275 PF00512 His Kinase A (phospho-acceptor) domain NJR02_16275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_16280 PF00072 Response regulator receiver domain NJR02_16280 PF00196 Bacterial regulatory proteins, luxR family NJR02_16285 PF03575 Peptidase family S51 NJR02_16290 PF07690 Major Facilitator Superfamily NJR02_16295 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NJR02_16295 PF00529 HlyD membrane-fusion protein of T1SS NJR02_16305 PF00206 Lyase NJR02_16305 PF10415 Fumarase C C-terminus NJR02_16315 PF01619 Proline dehydrogenase NJR02_16315 PF14850 DNA-binding domain of Proline dehydrogenase NJR02_16315 PF00171 Aldehyde dehydrogenase family NJR02_16315 PF18327 Proline utilization A proline dehydrogenase N-terminal domain NJR02_16320 PF00842 Alanine racemase, C-terminal domain NJR02_16320 PF01168 Alanine racemase, N-terminal domain NJR02_16325 PF00772 DnaB-like helicase N terminal domain NJR02_16325 PF03796 DnaB-like helicase C terminal domain NJR02_16335 PF02872 5'-nucleotidase, C-terminal domain NJR02_16335 PF00149 Calcineurin-like phosphoesterase NJR02_16355 PF02954 Bacterial regulatory protein, Fis family NJR02_16355 PF00072 Response regulator receiver domain NJR02_16355 PF00158 Sigma-54 interaction domain NJR02_16360 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NJR02_16360 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NJR02_16370 PF04102 SlyX NJR02_16375 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NJR02_16380 PF09526 Probable metal-binding protein (DUF2387) NJR02_16390 PF01584 CheW-like domain NJR02_16390 PF00072 Response regulator receiver domain NJR02_16395 PF00561 alpha/beta hydrolase fold NJR02_16400 PF01590 GAF domain NJR02_16400 PF00990 Diguanylate cyclase, GGDEF domain NJR02_16400 PF00360 Phytochrome region NJR02_16400 PF00563 EAL domain NJR02_16405 PF06794 Uncharacterised protein family (UPF0270) NJR02_16410 PF00485 Phosphoribulokinase / Uridine kinase family NJR02_16425 PF02566 OsmC-like protein NJR02_16430 PF00027 Cyclic nucleotide-binding domain NJR02_16430 PF13545 Crp-like helix-turn-helix domain NJR02_16435 PF13847 Methyltransferase domain NJR02_16440 PF08329 Chitinase A, N-terminal domain NJR02_16440 PF00704 Glycosyl hydrolases family 18 NJR02_16445 PF00989 PAS fold NJR02_16445 PF00512 His Kinase A (phospho-acceptor) domain NJR02_16445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_16450 PF12832 MFS_1 like family NJR02_16455 PF00593 TonB dependent receptor NJR02_16455 PF07715 TonB-dependent Receptor Plug Domain NJR02_16475 PF01243 Pyridoxamine 5'-phosphate oxidase NJR02_16480 PF06228 Haem utilisation ChuX/HutX NJR02_16490 PF01032 FecCD transport family NJR02_16495 PF00005 ABC transporter NJR02_16505 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NJR02_16505 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NJR02_16505 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NJR02_16510 PF01370 NAD dependent epimerase/dehydratase family NJR02_16515 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase NJR02_16525 PF00535 Glycosyl transferase family 2 NJR02_16530 PF01464 Transglycosylase SLT domain NJR02_16535 PF00005 ABC transporter NJR02_16535 PF12848 ABC transporter NJR02_16545 PF00860 Permease family NJR02_16550 PF00226 DnaJ domain NJR02_16550 PF05099 Tellurite resistance protein TerB NJR02_16555 PF00483 Nucleotidyl transferase NJR02_16560 PF01636 Phosphotransferase enzyme family NJR02_16565 PF04453 LPS transport system D NJR02_16565 PF03968 OstA-like protein NJR02_16570 PF00639 PPIC-type PPIASE domain NJR02_16570 PF09312 SurA N-terminal domain NJR02_16575 PF04166 Pyridoxal phosphate biosynthetic protein PdxA NJR02_16580 PF00398 Ribosomal RNA adenine dimethylase NJR02_16585 PF04379 ApaG domain NJR02_16590 PF00149 Calcineurin-like phosphoesterase NJR02_16600 PF00296 Luciferase-like monooxygenase NJR02_16610 PF07670 Nucleoside recognition NJR02_16615 PF01018 GTP1/OBG NJR02_16615 PF01926 50S ribosome-binding GTPase NJR02_16620 PF01016 Ribosomal L27 protein NJR02_16625 PF00829 Ribosomal prokaryotic L21 protein NJR02_16630 PF00348 Polyprenyl synthetase NJR02_16635 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) NJR02_16640 PF01145 SPFH domain / Band 7 family NJR02_16645 PF12221 Bacterial membrane protein N terminal NJR02_16645 PF01145 SPFH domain / Band 7 family NJR02_16650 PF16360 GTP-binding GTPase Middle Region NJR02_16650 PF13167 GTP-binding GTPase N-terminal NJR02_16650 PF01926 50S ribosome-binding GTPase NJR02_16655 PF17209 Hfq protein NJR02_16665 PF01119 DNA mismatch repair protein, C-terminal domain NJR02_16665 PF08676 MutL C terminal dimerisation domain NJR02_16670 PF01520 N-acetylmuramoyl-L-alanine amidase NJR02_16675 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NJR02_16680 PF01256 Carbohydrate kinase NJR02_16680 PF03853 YjeF-related protein N-terminus NJR02_16685 PF08331 Domain of unknown function (DUF1730) NJR02_16690 PF00480 ROK family NJR02_16700 PF00005 ABC transporter NJR02_16700 PF09383 NIL domain NJR02_16705 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_16710 PF03180 NLPA lipoprotein NJR02_16715 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NJR02_16715 PF13542 Helix-turn-helix domain of transposase family ISL3 NJR02_16715 PF01610 Transposase NJR02_16720 PF02357 Transcription termination factor nusG NJR02_16725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJR02_16730 PF00990 Diguanylate cyclase, GGDEF domain NJR02_16730 PF03707 Bacterial signalling protein N terminal repeat NJR02_16730 PF00563 EAL domain NJR02_16735 PF00072 Response regulator receiver domain NJR02_16735 PF09456 RcsC Alpha-Beta-Loop (ABL) NJR02_16735 PF00512 His Kinase A (phospho-acceptor) domain NJR02_16735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_16745 PF01966 HD domain NJR02_16745 PF13286 Phosphohydrolase-associated domain NJR02_16750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_16750 PF18415 Histidine kinase receptor ArcB trans-membrane domain NJR02_16750 PF01627 Hpt domain NJR02_16750 PF00989 PAS fold NJR02_16750 PF00072 Response regulator receiver domain NJR02_16750 PF00512 His Kinase A (phospho-acceptor) domain NJR02_16770 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) NJR02_16775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_16775 PF03466 LysR substrate binding domain NJR02_16785 PF01259 SAICAR synthetase NJR02_16790 PF06804 NlpB/DapX lipoprotein NJR02_16795 PF00701 Dihydrodipicolinate synthetase family NJR02_16800 PF01842 ACT domain NJR02_16805 PF00578 AhpC/TSA family NJR02_16810 PF03887 YfbU domain NJR02_16815 PF04217 Protein of unknown function, DUF412 NJR02_16820 PF00871 Acetokinase family NJR02_16825 PF07085 DRTGG domain NJR02_16825 PF01515 Phosphate acetyl/butaryl transferase NJR02_16830 PF10369 Small subunit of acetolactate synthase NJR02_16835 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NJR02_16835 PF00205 Thiamine pyrophosphate enzyme, central domain NJR02_16835 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NJR02_16850 PF01569 PAP2 superfamily NJR02_16860 PF00682 HMGL-like NJR02_16860 PF08502 LeuA allosteric (dimerisation) domain NJR02_16865 PF00180 Isocitrate/isopropylmalate dehydrogenase NJR02_16870 PF00330 Aconitase family (aconitate hydratase) NJR02_16875 PF00694 Aconitase C-terminal domain NJR02_16895 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_16900 PF00005 ABC transporter NJR02_16905 PF13638 PIN domain NJR02_16905 PF02562 PhoH-like protein NJR02_16915 PF00317 Ribonucleotide reductase, all-alpha domain NJR02_16915 PF08343 Ribonucleotide reductase N-terminal NJR02_16915 PF02867 Ribonucleotide reductase, barrel domain NJR02_16945 PF03060 Nitronate monooxygenase NJR02_16950 PF00445 Ribonuclease T2 family NJR02_16970 PF16527 Two-component sensor protein CpxA, periplasmic domain NJR02_16970 PF00672 HAMP domain NJR02_16970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_16970 PF00512 His Kinase A (phospho-acceptor) domain NJR02_16975 PF00072 Response regulator receiver domain NJR02_16975 PF00486 Transcriptional regulatory protein, C terminal NJR02_16980 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NJR02_16985 PF12704 MacB-like periplasmic core domain NJR02_16985 PF02687 FtsX-like permease family NJR02_16985 PF00005 ABC transporter NJR02_16995 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase NJR02_17015 PF03783 Curli production assembly/transport component CsgG NJR02_17025 PF05643 Putative bacterial lipoprotein (DUF799) NJR02_17030 PF00990 Diguanylate cyclase, GGDEF domain NJR02_17035 PF00271 Helicase conserved C-terminal domain NJR02_17035 PF00270 DEAD/DEAH box helicase NJR02_17040 PF00970 Oxidoreductase FAD-binding domain NJR02_17040 PF00111 2Fe-2S iron-sulfur cluster binding domain NJR02_17040 PF00175 Oxidoreductase NAD-binding domain NJR02_17045 PF02311 AraC-like ligand binding domain NJR02_17045 PF12833 Helix-turn-helix domain NJR02_17065 PF00753 Metallo-beta-lactamase superfamily NJR02_17085 PF01425 Amidase NJR02_17090 PF04371 Porphyromonas-type peptidyl-arginine deiminase NJR02_17095 PF03466 LysR substrate binding domain NJR02_17095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_17100 PF04480 Protein of unknown function (DUF559) NJR02_17110 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NJR02_17115 PF00583 Acetyltransferase (GNAT) family NJR02_17120 PF01758 Sodium Bile acid symporter family NJR02_17130 PF00009 Elongation factor Tu GTP binding domain NJR02_17130 PF03144 Elongation factor Tu domain 2 NJR02_17130 PF16658 Class II release factor RF3, C-terminal domain NJR02_17135 PF00072 Response regulator receiver domain NJR02_17135 PF00990 Diguanylate cyclase, GGDEF domain NJR02_17145 PF00563 EAL domain NJR02_17145 PF00990 Diguanylate cyclase, GGDEF domain NJR02_17145 PF08448 PAS fold NJR02_17150 PF05762 VWA domain containing CoxE-like protein NJR02_17155 PF07728 AAA domain (dynein-related subfamily) NJR02_17155 PF17868 AAA lid domain NJR02_17155 PF12592 Protein of unknown function (DUF3763) NJR02_17165 PF00583 Acetyltransferase (GNAT) family NJR02_17175 PF00501 AMP-binding enzyme NJR02_17185 PF01177 Asp/Glu/Hydantoin racemase NJR02_17200 PF00155 Aminotransferase class I and II NJR02_17200 PF00392 Bacterial regulatory proteins, gntR family NJR02_17215 PF00209 Sodium:neurotransmitter symporter family NJR02_17220 PF00209 Sodium:neurotransmitter symporter family NJR02_17240 PF07690 Major Facilitator Superfamily NJR02_17250 PF01037 Lrp/AsnC ligand binding domain NJR02_17265 PF01047 MarR family NJR02_17270 PF16884 N-terminal domain of oxidoreductase NJR02_17270 PF00107 Zinc-binding dehydrogenase NJR02_17275 PF00293 NUDIX domain NJR02_17295 PF01641 SelR domain NJR02_17300 PF00128 Alpha amylase, catalytic domain NJR02_17300 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NJR02_17305 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NJR02_17305 PF00128 Alpha amylase, catalytic domain NJR02_17305 PF02806 Alpha amylase, C-terminal all-beta domain NJR02_17310 PF02446 4-alpha-glucanotransferase NJR02_17315 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NJR02_17315 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NJR02_17320 PF01263 Aldose 1-epimerase NJR02_17325 PF02445 Quinolinate synthetase A protein NJR02_17330 PF00672 HAMP domain NJR02_17330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJR02_17405 PF13174 Tetratricopeptide repeat NJR02_17405 PF16331 TolA binding protein trimerisation NJR02_17410 PF00691 OmpA family NJR02_17415 PF04052 TolB amino-terminal domain NJR02_17415 PF07676 WD40-like Beta Propeller Repeat NJR02_17425 PF02472 Biopolymer transport protein ExbD/TolR NJR02_17430 PF01618 MotA/TolQ/ExbB proton channel family NJR02_17435 PF03061 Thioesterase superfamily NJR02_17440 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) NJR02_17445 PF08173 Membrane bound YbgT-like protein NJR02_17450 PF02322 Cytochrome bd terminal oxidase subunit II NJR02_17455 PF01654 Cytochrome bd terminal oxidase subunit I NJR02_17465 PF05496 Holliday junction DNA helicase RuvB P-loop domain NJR02_17465 PF05491 RuvB C-terminal winged helix domain NJR02_17465 PF17864 RuvB AAA lid domain NJR02_17470 PF07499 RuvA, C-terminal domain NJR02_17470 PF01330 RuvA N terminal domain NJR02_17480 PF03129 Anticodon binding domain NJR02_17480 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NJR02_17480 PF04073 Aminoacyl-tRNA editing domain NJR02_17485 PF00929 Exonuclease NJR02_17490 PF00106 short chain dehydrogenase NJR02_17505 PF00378 Enoyl-CoA hydratase/isomerase NJR02_17510 PF10952 Protein of unknown function (DUF2753) NJR02_17520 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NJR02_17530 PF12729 Four helix bundle sensory module for signal transduction NJR02_17530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJR02_17530 PF00672 HAMP domain NJR02_17535 PF00270 DEAD/DEAH box helicase NJR02_17535 PF00271 Helicase conserved C-terminal domain NJR02_17540 PF08534 Redoxin NJR02_17545 PF00403 Heavy-metal-associated domain NJR02_17550 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NJR02_17550 PF11852 Domain of unknown function (DUF3372) NJR02_17550 PF03714 Bacterial pullanase-associated domain NJR02_17550 PF18494 Pullulanase Ins domain NJR02_17550 PF17967 Pullulanase N2 domain NJR02_17565 PF02583 Metal-sensitive transcriptional repressor NJR02_17570 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) NJR02_17575 PF01270 Glycosyl hydrolases family 8 NJR02_17580 PF03170 Bacterial cellulose synthase subunit NJR02_17585 PF00535 Glycosyl transferase family 2 NJR02_17585 PF07238 PilZ domain NJR02_17590 PF06564 Cellulose biosynthesis protein BcsQ NJR02_17600 PF11658 Cellulose biosynthesis protein BcsG NJR02_17605 PF00155 Aminotransferase class I and II NJR02_17610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_17610 PF03466 LysR substrate binding domain NJR02_17620 PF04055 Radical SAM superfamily NJR02_17625 PF11230 Protein of unknown function (DUF3029) NJR02_17650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJR02_17650 PF00672 HAMP domain NJR02_17650 PF17200 Single Cache domain 2 NJR02_17655 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading NJR02_17655 PF18416 N-acetylglucosamine binding protein domain 2 NJR02_17660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_17660 PF03466 LysR substrate binding domain NJR02_17665 PF00005 ABC transporter NJR02_17665 PF12857 TOBE-like domain NJR02_17670 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_17675 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_17715 PF18337 RapA N-terminal Tudor like domain NJR02_17715 PF12137 RNA polymerase recycling family C-terminal NJR02_17715 PF00176 SNF2 family N-terminal domain NJR02_17715 PF00271 Helicase conserved C-terminal domain NJR02_17715 PF18339 RapA N-terminal Tudor like domain 1 NJR02_17720 PF00849 RNA pseudouridylate synthase NJR02_17730 PF03707 Bacterial signalling protein N terminal repeat NJR02_17730 PF00990 Diguanylate cyclase, GGDEF domain NJR02_17730 PF00563 EAL domain NJR02_17740 PF00118 TCP-1/cpn60 chaperonin family NJR02_17745 PF00166 Chaperonin 10 Kd subunit NJR02_17750 PF01554 MatE NJR02_17755 PF04186 FxsA cytoplasmic membrane protein NJR02_17760 PF10415 Fumarase C C-terminus NJR02_17760 PF00206 Lyase NJR02_17765 PF03605 Anaerobic c4-dicarboxylate membrane transporter NJR02_17770 PF04262 Glutamate-cysteine ligase NJR02_17775 PF00675 Insulinase (Peptidase family M16) NJR02_17775 PF05193 Peptidase M16 inactive domain NJR02_17780 PF09335 SNARE associated Golgi protein NJR02_17785 PF00109 Beta-ketoacyl synthase, N-terminal domain NJR02_17785 PF00698 Acyl transferase domain NJR02_17785 PF08240 Alcohol dehydrogenase GroES-like domain NJR02_17785 PF08990 Erythronolide synthase docking NJR02_17785 PF16197 Ketoacyl-synthetase C-terminal extension NJR02_17785 PF02801 Beta-ketoacyl synthase, C-terminal domain NJR02_17785 PF08659 KR domain NJR02_17785 PF14765 Polyketide synthase dehydratase NJR02_17785 PF00550 Phosphopantetheine attachment site NJR02_17795 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NJR02_17815 PF00175 Oxidoreductase NAD-binding domain NJR02_17815 PF00970 Oxidoreductase FAD-binding domain NJR02_17820 PF01281 Ribosomal protein L9, N-terminal domain NJR02_17820 PF03948 Ribosomal protein L9, C-terminal domain NJR02_17825 PF01084 Ribosomal protein S18 NJR02_17830 PF01250 Ribosomal protein S6 NJR02_17835 PF01566 Natural resistance-associated macrophage protein NJR02_17840 PF01411 tRNA synthetases class II (A) NJR02_17840 PF02272 DHHA1 domain NJR02_17840 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NJR02_17845 PF13673 Acetyltransferase (GNAT) domain NJR02_17855 PF00588 SpoU rRNA Methylase family NJR02_17855 PF08032 RNA 2'-O ribose methyltransferase substrate binding NJR02_17860 PF17876 Cold shock domain NJR02_17860 PF08461 Ribonuclease R winged-helix domain NJR02_17860 PF08206 Ribonuclease B OB domain NJR02_17860 PF00773 RNB domain NJR02_17860 PF00575 S1 RNA binding domain NJR02_17865 PF00990 Diguanylate cyclase, GGDEF domain NJR02_17870 PF02664 S-Ribosylhomocysteinase (LuxS) NJR02_17880 PF00543 Nitrogen regulatory protein P-II NJR02_17885 PF00795 Carbon-nitrogen hydrolase NJR02_17885 PF02540 NAD synthase NJR02_17920 PF07963 Prokaryotic N-terminal methylation motif NJR02_17920 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor NJR02_17925 PF02401 LytB protein NJR02_17930 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NJR02_17935 PF01252 Signal peptidase (SPase) II NJR02_17940 PF06827 Zinc finger found in FPG and IleRS NJR02_17940 PF00133 tRNA synthetases class I (I, L, M and V) NJR02_17940 PF08264 Anticodon-binding domain of tRNA NJR02_17945 PF01687 Riboflavin kinase NJR02_17945 PF06574 FAD synthetase NJR02_17950 PF03023 Lipid II flippase MurJ NJR02_17955 PF01649 Ribosomal protein S20 NJR02_17960 PF01022 Bacterial regulatory protein, arsR family NJR02_17965 PF03466 LysR substrate binding domain NJR02_17965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_17975 PF06965 Na+/H+ antiporter 1 NJR02_17980 PF00303 Thymidylate synthase NJR02_17985 PF01790 Prolipoprotein diacylglyceryl transferase NJR02_17990 PF02896 PEP-utilising enzyme, TIM barrel domain NJR02_17990 PF00391 PEP-utilising enzyme, mobile domain NJR02_17990 PF05524 PEP-utilising enzyme, N-terminal NJR02_17990 PF01590 GAF domain NJR02_17995 PF00293 NUDIX domain NJR02_18000 PF02976 DNA mismatch repair enzyme MutH NJR02_18010 PF01245 Ribosomal protein L19 NJR02_18015 PF01746 tRNA (Guanine-1)-methyltransferase NJR02_18020 PF01782 RimM N-terminal domain NJR02_18020 PF05239 PRC-barrel domain NJR02_18025 PF00886 Ribosomal protein S16 NJR02_18030 PF02978 Signal peptide binding domain NJR02_18030 PF02881 SRP54-type protein, helical bundle domain NJR02_18030 PF00448 SRP54-type protein, GTPase domain NJR02_18035 PF01578 Cytochrome C assembly protein NJR02_18040 PF00571 CBS domain NJR02_18040 PF03471 Transporter associated domain NJR02_18040 PF01595 Cyclin M transmembrane N-terminal domain NJR02_18045 PF02082 Transcriptional regulator NJR02_18050 PF00970 Oxidoreductase FAD-binding domain NJR02_18050 PF00042 Globin NJR02_18050 PF00175 Oxidoreductase NAD-binding domain NJR02_18055 PF08238 Sel1 repeat NJR02_18060 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NJR02_18060 PF00056 lactate/malate dehydrogenase, NAD binding domain NJR02_18065 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_18070 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_18075 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJR02_18080 PF00005 ABC transporter NJR02_18085 PF01316 Arginine repressor, DNA binding domain NJR02_18085 PF02863 Arginine repressor, C-terminal domain NJR02_18090 PF04261 Dyp-type peroxidase family NJR02_18095 PF08402 TOBE domain NJR02_18095 PF00005 ABC transporter NJR02_18110 PF00543 Nitrogen regulatory protein P-II NJR02_18115 PF00472 RF-1 domain NJR02_18120 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NJR02_18120 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NJR02_18125 PF07670 Nucleoside recognition NJR02_18125 PF07662 Na+ dependent nucleoside transporter C-terminus NJR02_18125 PF01773 Na+ dependent nucleoside transporter N-terminus NJR02_18130 PF03466 LysR substrate binding domain NJR02_18130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_18135 PF00255 Glutathione peroxidase NJR02_18145 PF02595 Glycerate kinase family NJR02_18150 PF02447 GntP family permease NJR02_18155 PF13556 PucR C-terminal helix-turn-helix domain NJR02_18155 PF17853 GGDEF-like domain NJR02_18155 PF05651 Putative sugar diacid recognition NJR02_18160 PF06062 Uncharacterised protein family (UPF0231) NJR02_18180 PF02594 Uncharacterised ACR, YggU family COG1872 NJR02_18185 PF02325 YGGT family NJR02_18190 PF03807 NADP oxidoreductase coenzyme F420-dependent NJR02_18190 PF14748 Pyrroline-5-carboxylate reductase dimerisation NJR02_18195 PF01168 Alanine racemase, N-terminal domain NJR02_18200 PF00437 Type II/IV secretion system protein NJR02_18205 PF00437 Type II/IV secretion system protein NJR02_18210 PF03883 Peroxide stress protein YaaA NJR02_18215 PF00271 Helicase conserved C-terminal domain NJR02_18215 PF00270 DEAD/DEAH box helicase NJR02_18220 PF05175 Methyltransferase small domain NJR02_18225 PF05525 Branched-chain amino acid transport protein NJR02_18240 PF01475 Ferric uptake regulator family NJR02_18245 PF01207 Dihydrouridine synthase (Dus) NJR02_18260 PF00216 Bacterial DNA-binding protein NJR02_18265 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ NJR02_18270 PF07238 PilZ domain NJR02_18275 PF18073 Rubredoxin metal binding domain NJR02_18290 PF18429 Domain of unknown function (DUF5609) NJR02_18300 PF08448 PAS fold NJR02_18300 PF13426 PAS domain NJR02_18300 PF00990 Diguanylate cyclase, GGDEF domain NJR02_18300 PF00563 EAL domain NJR02_18300 PF08447 PAS fold NJR02_18300 PF05231 MASE1 NJR02_18305 PF01048 Phosphorylase superfamily NJR02_18310 PF01676 Metalloenzyme superfamily NJR02_18315 PF02885 Glycosyl transferase family, helical bundle domain NJR02_18315 PF00591 Glycosyl transferase family, a/b domain NJR02_18315 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain NJR02_18320 PF01791 DeoC/LacD family aldolase NJR02_18330 PF01773 Na+ dependent nucleoside transporter N-terminus NJR02_18330 PF07662 Na+ dependent nucleoside transporter C-terminus NJR02_18330 PF07670 Nucleoside recognition NJR02_18335 PF01026 TatD related DNase NJR02_18355 PF01938 TRAM domain NJR02_18355 PF05958 tRNA (Uracil-5-)-methyltransferase NJR02_18360 PF00909 Ammonium Transporter Family NJR02_18380 PF03739 Lipopolysaccharide export system permease LptF/LptG NJR02_18385 PF03739 Lipopolysaccharide export system permease LptF/LptG NJR02_18390 PF02789 Cytosol aminopeptidase family, N-terminal domain NJR02_18390 PF00883 Cytosol aminopeptidase family, catalytic domain NJR02_18395 PF04364 DNA polymerase III chi subunit, HolC NJR02_18400 PF08264 Anticodon-binding domain of tRNA NJR02_18400 PF00133 tRNA synthetases class I (I, L, M and V) NJR02_18400 PF10458 Valyl tRNA synthetase tRNA binding arm NJR02_18405 PF00571 CBS domain NJR02_18405 PF03471 Transporter associated domain NJR02_18405 PF01595 Cyclin M transmembrane N-terminal domain NJR02_18410 PF09335 SNARE associated Golgi protein NJR02_18415 PF00768 D-alanyl-D-alanine carboxypeptidase NJR02_18420 PF13542 Helix-turn-helix domain of transposase family ISL3 NJR02_18420 PF01610 Transposase NJR02_18420 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NJR02_18455 PF02599 Global regulator protein family NJR02_18460 PF00696 Amino acid kinase family NJR02_18460 PF01842 ACT domain NJR02_18460 PF13840 ACT domain NJR02_18465 PF02272 DHHA1 domain NJR02_18465 PF01411 tRNA synthetases class II (A) NJR02_18465 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NJR02_18470 PF02631 RecX family NJR02_18475 PF00154 recA bacterial DNA recombination protein NJR02_18480 PF02464 Competence-damaged protein NJR02_18490 PF01624 MutS domain I NJR02_18490 PF05188 MutS domain II NJR02_18490 PF05192 MutS domain III NJR02_18490 PF05190 MutS family domain IV NJR02_18490 PF00488 MutS domain V NJR02_18495 PF02028 BCCT, betaine/carnitine/choline family transporter NJR02_18510 PF04222 Protein of unknown function (DUF416) NJR02_18515 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NJR02_18520 PF01551 Peptidase family M23 NJR02_18520 PF08525 Opacity-associated protein A N-terminal motif NJR02_18520 PF01476 LysM domain NJR02_18540 PF01297 Zinc-uptake complex component A periplasmic NJR02_18545 PF00005 ABC transporter NJR02_18550 PF00950 ABC 3 transport family NJR02_18555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_18555 PF03466 LysR substrate binding domain NJR02_18565 PF03167 Uracil DNA glycosylase superfamily NJR02_18570 PF00892 EamA-like transporter family NJR02_18575 PF01541 GIY-YIG catalytic domain NJR02_18590 PF04012 PspA/IM30 family NJR02_18595 PF01553 Acyltransferase NJR02_18615 PF00578 AhpC/TSA family NJR02_18625 PF01556 DnaJ C terminal domain NJR02_18625 PF00226 DnaJ domain NJR02_18625 PF00684 DnaJ central domain NJR02_18665 PF01609 Transposase DDE domain NJR02_18665 PF05598 Transposase domain (DUF772) NJR02_18670 PF05598 Transposase domain (DUF772) NJR02_18670 PF01609 Transposase DDE domain NJR02_18675 PF03989 DNA gyrase C-terminal domain, beta-propeller NJR02_18675 PF00521 DNA gyrase/topoisomerase IV, subunit A NJR02_18680 PF00204 DNA gyrase B NJR02_18680 PF00986 DNA gyrase B subunit, carboxyl terminus NJR02_18680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_18680 PF01751 Toprim domain NJR02_18685 PF04632 Fusaric acid resistance protein family NJR02_18690 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NJR02_18690 PF00529 HlyD membrane-fusion protein of T1SS NJR02_18695 PF07869 Protein of unknown function (DUF1656) NJR02_18705 PF00293 NUDIX domain NJR02_18710 PF05728 Uncharacterised protein family (UPF0227) NJR02_18720 PF00149 Calcineurin-like phosphoesterase NJR02_18725 PF06853 Protein of unknown function (DUF1249) NJR02_18730 PF00293 NUDIX domain NJR02_18735 PF02321 Outer membrane efflux protein NJR02_18740 PF00294 pfkB family carbohydrate kinase NJR02_18740 PF01467 Cytidylyltransferase-like NJR02_18745 PF03279 Bacterial lipid A biosynthesis acyltransferase NJR02_18750 PF02872 5'-nucleotidase, C-terminal domain NJR02_18750 PF00149 Calcineurin-like phosphoesterase NJR02_18755 PF01810 LysE type translocator NJR02_18760 PF03472 Autoinducer binding domain NJR02_18760 PF00196 Bacterial regulatory proteins, luxR family NJR02_18765 PF00765 Autoinducer synthase NJR02_18770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_18770 PF03466 LysR substrate binding domain NJR02_18775 PF17876 Cold shock domain NJR02_18775 PF08206 Ribonuclease B OB domain NJR02_18775 PF00773 RNB domain NJR02_18780 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NJR02_18780 PF02378 Phosphotransferase system, EIIC NJR02_18780 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NJR02_18785 PF01232 Mannitol dehydrogenase Rossmann domain NJR02_18785 PF08125 Mannitol dehydrogenase C-terminal domain NJR02_18790 PF05068 Mannitol repressor NJR02_18810 PF01544 CorA-like Mg2+ transporter protein NJR02_18815 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 NJR02_18830 PF07670 Nucleoside recognition NJR02_18830 PF07662 Na+ dependent nucleoside transporter C-terminus NJR02_18830 PF01773 Na+ dependent nucleoside transporter N-terminus NJR02_18835 PF00270 DEAD/DEAH box helicase NJR02_18835 PF00271 Helicase conserved C-terminal domain NJR02_18835 PF03880 DbpA RNA binding domain NJR02_18855 PF01040 UbiA prenyltransferase family NJR02_18860 PF00425 chorismate binding enzyme NJR02_18865 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NJR02_18865 PF16582 Middle domain of thiamine pyrophosphate NJR02_18865 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NJR02_18870 PF12697 Alpha/beta hydrolase family NJR02_18875 PF00378 Enoyl-CoA hydratase/isomerase NJR02_18880 PF13378 Enolase C-terminal domain-like NJR02_18885 PF00501 AMP-binding enzyme NJR02_18890 PF01752 Collagenase NJR02_18890 PF08453 Peptidase family M9 N-terminal NJR02_18895 PF02698 DUF218 domain NJR02_18900 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NJR02_18900 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NJR02_18910 PF00561 alpha/beta hydrolase fold NJR02_18930 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NJR02_18930 PF12793 Sugar transport-related sRNA regulator N-term NJR02_18940 PF01053 Cys/Met metabolism PLP-dependent enzyme NJR02_18950 PF00465 Iron-containing alcohol dehydrogenase NJR02_18965 PF00106 short chain dehydrogenase NJR02_18985 PF02308 MgtC family NJR02_18990 PF00128 Alpha amylase, catalytic domain NJR02_18990 PF02903 Alpha amylase, N-terminal ig-like domain NJR02_18990 PF16657 Maltogenic Amylase, C-terminal domain NJR02_19000 PF00884 Sulfatase NJR02_19005 PF01037 Lrp/AsnC ligand binding domain NJR02_19015 PF04204 Homoserine O-succinyltransferase NJR02_19025 PF00994 Probable molybdopterin binding domain NJR02_19025 PF02464 Competence-damaged protein NJR02_19045 PF07722 Peptidase C26 NJR02_19055 PF13419 Haloacid dehalogenase-like hydrolase NJR02_19060 PF02899 Phage integrase, N-terminal SAM-like domain NJR02_19060 PF00589 Phage integrase family NJR02_19070 PF01678 Diaminopimelate epimerase NJR02_19075 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NJR02_19075 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NJR02_19085 PF01491 Frataxin-like domain NJR02_19090 PF02230 Phospholipase/Carboxylesterase NJR02_19095 PF12633 Adenylate cyclase NT domain NJR02_19095 PF01295 Adenylate cyclase, class-I NJR02_19100 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NJR02_19100 PF03900 Porphobilinogen deaminase, C-terminal domain NJR02_19105 PF02602 Uroporphyrinogen-III synthase HemD NJR02_19110 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase NJR02_19115 PF07719 Tetratricopeptide repeat NJR02_19115 PF07219 HemY protein N-terminus NJR02_19120 PF03692 Putative zinc- or iron-chelating domain NJR02_19125 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded NJR02_19135 PF08241 Methyltransferase domain NJR02_19145 PF07715 TonB-dependent Receptor Plug Domain NJR02_19145 PF00593 TonB dependent receptor NJR02_19160 PF01638 HxlR-like helix-turn-helix NJR02_19165 PF08803 Putative mono-oxygenase ydhR NJR02_19175 PF06055 Exopolysaccharide synthesis, ExoD NJR02_19180 PF00990 Diguanylate cyclase, GGDEF domain NJR02_19185 PF13036 Peptidoglycan-synthase activator LpoB NJR02_19210 PF01609 Transposase DDE domain NJR02_19210 PF05598 Transposase domain (DUF772) NJR02_19215 PF06968 Biotin and Thiamin Synthesis associated domain NJR02_19215 PF04055 Radical SAM superfamily NJR02_19220 PF05690 Thiazole biosynthesis protein ThiG NJR02_19230 PF00899 ThiF family NJR02_19235 PF02581 Thiamine monophosphate synthase NJR02_19240 PF13667 ThiC-associated domain NJR02_19240 PF01964 Radical SAM ThiC family NJR02_19255 PF00072 Response regulator receiver domain NJR02_19255 PF00486 Transcriptional regulatory protein, C terminal NJR02_19260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_19265 PF08443 RimK-like ATP-grasp domain NJR02_19265 PF18030 RimK PreATP-grasp domain NJR02_19275 PF02310 B12 binding domain NJR02_19275 PF02607 B12 binding domain NJR02_19275 PF02965 Vitamin B12 dependent methionine synthase, activation domain NJR02_19275 PF00809 Pterin binding enzyme NJR02_19275 PF02574 Homocysteine S-methyltransferase NJR02_19280 PF00999 Sodium/hydrogen exchanger family NJR02_19300 PF04228 Putative neutral zinc metallopeptidase NJR02_19310 PF07690 Major Facilitator Superfamily NJR02_19315 PF01914 MarC family integral membrane protein NJR02_19325 PF01523 Putative modulator of DNA gyrase NJR02_19330 PF00795 Carbon-nitrogen hydrolase NJR02_19335 PF13502 AsmA-like C-terminal region NJR02_19335 PF13116 Protein of unknown function NJR02_19340 PF00575 S1 RNA binding domain NJR02_19340 PF10150 Ribonuclease E/G family NJR02_19345 PF02545 Maf-like protein NJR02_19350 PF04093 rod shape-determining protein MreD NJR02_19355 PF04085 rod shape-determining protein MreC NJR02_19385 PF07963 Prokaryotic N-terminal methylation motif NJR02_19385 PF00114 Pilin (bacterial filament) NJR02_19405 PF00482 Type II secretion system (T2SS), protein F NJR02_19410 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NJR02_19410 PF00437 Type II/IV secretion system protein NJR02_19420 PF01471 Putative peptidoglycan binding domain NJR02_19420 PF13401 AAA domain NJR02_19430 PF00263 Bacterial type II and III secretion system protein NJR02_19430 PF03958 Bacterial type II/III secretion system short domain NJR02_19470 PF01699 Sodium/calcium exchanger protein NJR02_19475 PF00221 Aromatic amino acid lyase NJR02_19480 PF01175 Urocanase Rossmann-like domain NJR02_19480 PF17392 Urocanase C-terminal domain NJR02_19480 PF17391 Urocanase N-terminal domain NJR02_19485 PF00491 Arginase family NJR02_19490 PF01979 Amidohydrolase family NJR02_19495 PF07702 UTRA domain NJR02_19495 PF00392 Bacterial regulatory proteins, gntR family NJR02_19500 PF00484 Carbonic anhydrase NJR02_19505 PF00140 Sigma-70 factor, region 1.2 NJR02_19505 PF04542 Sigma-70 region 2 NJR02_19505 PF04545 Sigma-70, region 4 NJR02_19510 PF18075 FtsX extracellular domain NJR02_19515 PF00005 ABC transporter NJR02_19520 PF02881 SRP54-type protein, helical bundle domain NJR02_19520 PF00448 SRP54-type protein, GTPase domain NJR02_19535 PF07226 Protein of unknown function (DUF1422) NJR02_19540 PF00440 Bacterial regulatory proteins, tetR family NJR02_19550 PF13091 PLD-like domain NJR02_19560 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJR02_19560 PF01464 Transglycosylase SLT domain NJR02_19570 PF02416 mttA/Hcf106 family NJR02_19575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_19575 PF03466 LysR substrate binding domain NJR02_19580 PF01914 MarC family integral membrane protein NJR02_19585 PF10678 Protein of unknown function (DUF2492) NJR02_19590 PF00375 Sodium:dicarboxylate symporter family NJR02_19605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_19605 PF03466 LysR substrate binding domain NJR02_19610 PF13533 Biotin-lipoyl like NJR02_19615 PF07690 Major Facilitator Superfamily NJR02_19620 PF07947 YhhN family NJR02_19635 PF16868 NMT1-like family NJR02_19640 PF00326 Prolyl oligopeptidase family NJR02_19640 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NJR02_19655 PF00106 short chain dehydrogenase NJR02_19665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_19665 PF03466 LysR substrate binding domain NJR02_19670 PF02525 Flavodoxin-like fold NJR02_19675 PF02254 TrkA-N domain NJR02_19675 PF00999 Sodium/hydrogen exchanger family NJR02_19725 PF01196 Ribosomal protein L17 NJR02_19730 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NJR02_19730 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NJR02_19730 PF01000 RNA polymerase Rpb3/RpoA insert domain NJR02_19735 PF01479 S4 domain NJR02_19735 PF00163 Ribosomal protein S4/S9 N-terminal domain NJR02_19740 PF00411 Ribosomal protein S11 NJR02_19745 PF00416 Ribosomal protein S13/S18 NJR02_19750 PF00444 Ribosomal protein L36 NJR02_19755 PF00344 SecY translocase NJR02_19760 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NJR02_19765 PF00327 Ribosomal protein L30p/L7e NJR02_19770 PF03719 Ribosomal protein S5, C-terminal domain NJR02_19770 PF00333 Ribosomal protein S5, N-terminal domain NJR02_19775 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NJR02_19780 PF00347 Ribosomal protein L6 NJR02_19785 PF00410 Ribosomal protein S8 NJR02_19790 PF00253 Ribosomal protein S14p/S29e NJR02_19795 PF00281 Ribosomal protein L5 NJR02_19795 PF00673 ribosomal L5P family C-terminus NJR02_19800 PF00467 KOW motif NJR02_19800 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NJR02_19805 PF00238 Ribosomal protein L14p/L23e NJR02_19810 PF00366 Ribosomal protein S17 NJR02_19815 PF00831 Ribosomal L29 protein NJR02_19820 PF00252 Ribosomal protein L16p/L10e NJR02_19825 PF07650 KH domain NJR02_19825 PF00189 Ribosomal protein S3, C-terminal domain NJR02_19830 PF00237 Ribosomal protein L22p/L17e NJR02_19835 PF00203 Ribosomal protein S19 NJR02_19840 PF03947 Ribosomal Proteins L2, C-terminal domain NJR02_19840 PF00181 Ribosomal Proteins L2, RNA binding domain NJR02_19845 PF00276 Ribosomal protein L23 NJR02_19850 PF00573 Ribosomal protein L4/L1 family NJR02_19855 PF00297 Ribosomal protein L3 NJR02_19860 PF00338 Ribosomal protein S10p/S20e NJR02_19870 PF00672 HAMP domain NJR02_19870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_19870 PF00512 His Kinase A (phospho-acceptor) domain NJR02_19875 PF00486 Transcriptional regulatory protein, C terminal NJR02_19875 PF00072 Response regulator receiver domain NJR02_19880 PF01272 Transcription elongation factor, GreA/GreB, C-term NJR02_19880 PF03449 Transcription elongation factor, N-terminal NJR02_19885 PF17674 HHH domain NJR02_19885 PF00575 S1 RNA binding domain NJR02_19885 PF09371 Tex-like protein N-terminal domain NJR02_19885 PF16921 Tex protein YqgF-like domain NJR02_19900 PF00561 alpha/beta hydrolase fold NJR02_19905 PF00156 Phosphoribosyl transferase domain NJR02_19910 PF01521 Iron-sulphur cluster biosynthesis NJR02_19910 PF01106 NifU-like domain NJR02_19915 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NJR02_19915 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NJR02_19920 PF02556 Preprotein translocase subunit SecB NJR02_19925 PF00581 Rhodanese-like domain NJR02_19930 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NJR02_19930 PF01676 Metalloenzyme superfamily NJR02_19935 PF01551 Peptidase family M23 NJR02_19945 PF00356 Bacterial regulatory proteins, lacI family NJR02_19945 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NJR02_19960 PF01081 KDPG and KHG aldolase NJR02_19965 PF00920 Dehydratase family NJR02_19970 PF01202 Shikimate kinase NJR02_19975 PF02447 GntP family permease NJR02_19980 PF13091 PLD-like domain NJR02_19985 PF00271 Helicase conserved C-terminal domain NJR02_19985 PF17191 RecG wedge domain NJR02_19985 PF00270 DEAD/DEAH box helicase NJR02_19995 PF00583 Acetyltransferase (GNAT) family NJR02_19995 PF09500 Putative thioesterase (yiiD_Cterm) NJR02_20005 PF02580 D-Tyr-tRNA(Tyr) deacylase NJR02_20010 PF03631 Virulence factor BrkB NJR02_20015 PF00679 Elongation factor G C-terminus NJR02_20015 PF00009 Elongation factor Tu GTP binding domain NJR02_20015 PF03144 Elongation factor Tu domain 2 NJR02_20020 PF00120 Glutamine synthetase, catalytic domain NJR02_20020 PF03951 Glutamine synthetase, beta-Grasp domain NJR02_20030 PF00989 PAS fold NJR02_20030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_20030 PF00512 His Kinase A (phospho-acceptor) domain NJR02_20035 PF00072 Response regulator receiver domain NJR02_20035 PF02954 Bacterial regulatory protein, Fis family NJR02_20035 PF00158 Sigma-54 interaction domain NJR02_20040 PF00962 Adenosine/AMP deaminase NJR02_20045 PF06969 HemN C-terminal domain NJR02_20045 PF04055 Radical SAM superfamily NJR02_20050 PF10675 Protein of unknown function (DUF2489) NJR02_20055 PF04220 Der GTPase activator (YihI) NJR02_20060 PF00034 Cytochrome c NJR02_20065 PF01926 50S ribosome-binding GTPase NJR02_20070 PF01488 Shikimate / quinate 5-dehydrogenase NJR02_20070 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NJR02_20070 PF08501 Shikimate dehydrogenase substrate binding domain NJR02_20075 PF01218 Coproporphyrinogen III oxidase NJR02_20080 PF01300 Telomere recombination NJR02_20085 PF01396 Topoisomerase DNA binding C4 zinc finger NJR02_20090 PF04361 Protein of unknown function (DUF494) NJR02_20095 PF02481 DNA recombination-mediator protein A NJR02_20095 PF17782 DprA winged helix domain NJR02_20105 PF01327 Polypeptide deformylase NJR02_20110 PF02911 Formyl transferase, C-terminal domain NJR02_20110 PF00551 Formyl transferase NJR02_20115 PF01189 16S rRNA methyltransferase RsmB/F NJR02_20115 PF01029 NusB family NJR02_20120 PF02254 TrkA-N domain NJR02_20120 PF02080 TrkA-C domain NJR02_20125 PF02386 Cation transport protein NJR02_20130 PF02646 RmuC family NJR02_20145 PF02082 Transcriptional regulator NJR02_20150 PF00294 pfkB family carbohydrate kinase NJR02_20155 PF03466 LysR substrate binding domain NJR02_20155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_20160 PF00117 Glutamine amidotransferase class-I NJR02_20160 PF00958 GMP synthase C terminal domain NJR02_20160 PF02540 NAD synthase NJR02_20165 PF00171 Aldehyde dehydrogenase family NJR02_20170 PF00202 Aminotransferase class-III NJR02_20175 PF07883 Cupin domain NJR02_20175 PF01381 Helix-turn-helix NJR02_20180 PF00171 Aldehyde dehydrogenase family NJR02_20190 PF00892 EamA-like transporter family NJR02_20195 PF12833 Helix-turn-helix domain NJR02_20200 PF01810 LysE type translocator NJR02_20205 PF06206 CpeT/CpcT family (DUF1001) NJR02_20225 PF14001 YdfZ protein NJR02_20240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_20240 PF03466 LysR substrate binding domain NJR02_20255 PF00580 UvrD/REP helicase N-terminal domain NJR02_20255 PF13361 UvrD-like helicase C-terminal domain NJR02_20270 PF02608 ABC transporter substrate-binding protein PnrA-like NJR02_20275 PF00005 ABC transporter NJR02_20280 PF02653 Branched-chain amino acid transport system / permease component NJR02_20285 PF02653 Branched-chain amino acid transport system / permease component NJR02_20295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJR02_20295 PF03466 LysR substrate binding domain NJR02_20300 PF00107 Zinc-binding dehydrogenase NJR02_20300 PF08240 Alcohol dehydrogenase GroES-like domain NJR02_20305 PF00756 Putative esterase NJR02_20320 PF12867 DinB superfamily NJR02_20320 PF03781 Sulfatase-modifying factor enzyme 1 NJR02_20325 PF13593 SBF-like CPA transporter family (DUF4137) NJR02_20330 PF13520 Amino acid permease NJR02_20335 PF01588 Putative tRNA binding domain NJR02_20340 PF13520 Amino acid permease NJR02_20345 PF04074 YhcH/YjgK/YiaL NJR02_20350 PF02837 Glycosyl hydrolases family 2, sugar binding domain NJR02_20350 PF00703 Glycosyl hydrolases family 2 NJR02_20350 PF02929 Beta galactosidase small chain NJR02_20350 PF02836 Glycosyl hydrolases family 2, TIM barrel domain NJR02_20350 PF16353 Domain of unknown function(DUF4981) NJR02_20355 PF00356 Bacterial regulatory proteins, lacI family NJR02_20400 PF00132 Bacterial transferase hexapeptide (six repeats) NJR02_20405 PF01612 3'-5' exonuclease NJR02_20405 PF01367 5'-3' exonuclease, C-terminal SAM fold NJR02_20405 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NJR02_20405 PF00476 DNA polymerase family A NJR02_20415 PF06005 Cell division protein ZapB NJR02_20425 PF06426 Serine acetyltransferase, N-terminal NJR02_20425 PF00132 Bacterial transferase hexapeptide (six repeats) NJR02_20430 PF16916 Dimerisation domain of Zinc Transporter NJR02_20430 PF01545 Cation efflux family NJR02_20435 PF00072 Response regulator receiver domain NJR02_20435 PF00486 Transcriptional regulatory protein, C terminal NJR02_20440 PF16527 Two-component sensor protein CpxA, periplasmic domain NJR02_20440 PF00672 HAMP domain NJR02_20440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_20440 PF00512 His Kinase A (phospho-acceptor) domain NJR02_20445 PF00588 SpoU rRNA Methylase family NJR02_20450 PF01554 MatE NJR02_20455 PF02630 SCO1/SenC NJR02_20465 PF00717 Peptidase S24-like NJR02_20465 PF01726 LexA DNA binding domain NJR02_20470 PF01553 Acyltransferase NJR02_20475 PF01040 UbiA prenyltransferase family NJR02_20480 PF04345 Chorismate lyase NJR02_20485 PF03748 Flagellar basal body-associated protein FliL NJR02_20500 PF00356 Bacterial regulatory proteins, lacI family NJR02_20500 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NJR02_20505 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NJR02_20515 PF03611 PTS system sugar-specific permease component NJR02_20525 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NJR02_20530 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) NJR02_20545 PF01370 NAD dependent epimerase/dehydratase family NJR02_20550 PF00440 Bacterial regulatory proteins, tetR family NJR02_20550 PF08360 QacR-like protein, C-terminal region NJR02_20555 PF00155 Aminotransferase class I and II NJR02_20560 PF08240 Alcohol dehydrogenase GroES-like domain NJR02_20560 PF00107 Zinc-binding dehydrogenase NJR02_20565 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NJR02_20570 PF00563 EAL domain NJR02_20570 PF03707 Bacterial signalling protein N terminal repeat NJR02_20570 PF00990 Diguanylate cyclase, GGDEF domain NJR02_20575 PF00580 UvrD/REP helicase N-terminal domain NJR02_20575 PF13361 UvrD-like helicase C-terminal domain NJR02_20580 PF00266 Aminotransferase class-V NJR02_20585 PF02657 Fe-S metabolism associated domain NJR02_20590 PF00899 ThiF family NJR02_20620 PF12724 Flavodoxin domain NJR02_20625 PF02386 Cation transport protein NJR02_20630 PF01205 Uncharacterized protein family UPF0029 NJR02_20630 PF09186 Domain of unknown function (DUF1949) NJR02_20635 PF00557 Metallopeptidase family M24 NJR02_20640 PF13193 AMP-binding enzyme C-terminal domain NJR02_20640 PF00501 AMP-binding enzyme NJR02_20645 PF00378 Enoyl-CoA hydratase/isomerase NJR02_20645 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NJR02_20645 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NJR02_20650 PF00108 Thiolase, N-terminal domain NJR02_20650 PF02803 Thiolase, C-terminal domain NJR02_20655 PF00486 Transcriptional regulatory protein, C terminal NJR02_20655 PF00072 Response regulator receiver domain NJR02_20660 PF00672 HAMP domain NJR02_20660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_20660 PF00512 His Kinase A (phospho-acceptor) domain NJR02_20665 PF01547 Bacterial extracellular solute-binding protein NJR02_20680 PF01206 Sulfurtransferase TusA NJR02_20685 PF01042 Endoribonuclease L-PSP NJR02_20705 PF13488 Glycine zipper NJR02_20705 PF00691 OmpA family NJR02_20715 PF00857 Isochorismatase family NJR02_20720 PF03352 Methyladenine glycosylase NJR02_20725 PF02091 Glycyl-tRNA synthetase alpha subunit NJR02_20730 PF05746 DALR anticodon binding domain NJR02_20730 PF02092 Glycyl-tRNA synthetase beta subunit NJR02_20750 PF00990 Diguanylate cyclase, GGDEF domain NJR02_20750 PF01590 GAF domain NJR02_20750 PF00563 EAL domain NJR02_20750 PF00360 Phytochrome region NJR02_20770 PF03222 Tryptophan/tyrosine permease family NJR02_20775 PF03222 Tryptophan/tyrosine permease family NJR02_20780 PF01212 Beta-eliminating lyase NJR02_20785 PF05598 Transposase domain (DUF772) NJR02_20785 PF01609 Transposase DDE domain NJR02_20790 PF12801 4Fe-4S binding domain NJR02_20800 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJR02_20800 PF18113 Rubredoxin binding C-terminal domain NJR02_20805 PF00301 Rubredoxin NJR02_20805 PF00753 Metallo-beta-lactamase superfamily NJR02_20805 PF00258 Flavodoxin NJR02_20810 PF01590 GAF domain NJR02_20810 PF00158 Sigma-54 interaction domain NJR02_20815 PF00356 Bacterial regulatory proteins, lacI family NJR02_20820 PF13458 Periplasmic binding protein NJR02_20825 PF02653 Branched-chain amino acid transport system / permease component NJR02_20830 PF02653 Branched-chain amino acid transport system / permease component NJR02_20830 PF11862 Domain of unknown function (DUF3382) NJR02_20835 PF00005 ABC transporter NJR02_20835 PF12399 Branched-chain amino acid ATP-binding cassette transporter NJR02_20840 PF00005 ABC transporter NJR02_20850 PF01810 LysE type translocator NJR02_20855 PF00581 Rhodanese-like domain NJR02_20860 PF01694 Rhomboid family NJR02_20860 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease NJR02_20865 PF12262 Bacterial virulence factor lipase N-terminal NJR02_20870 PF04380 Membrane fusogenic activity NJR02_20875 PF00175 Oxidoreductase NAD-binding domain NJR02_20880 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase NJR02_20890 PF07497 Rho termination factor, RNA-binding domain NJR02_20890 PF07498 Rho termination factor, N-terminal domain NJR02_20890 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NJR02_20895 PF00085 Thioredoxin NJR02_20900 PF00271 Helicase conserved C-terminal domain NJR02_20900 PF00270 DEAD/DEAH box helicase NJR02_20905 PF02541 Ppx/GppA phosphatase family NJR02_20915 PF04445 Putative SAM-dependent methyltransferase NJR02_20920 PF00990 Diguanylate cyclase, GGDEF domain NJR02_20920 PF00563 EAL domain NJR02_20920 PF03707 Bacterial signalling protein N terminal repeat NJR02_20925 PF01432 Peptidase family M3 NJR02_20930 PF00490 Delta-aminolevulinic acid dehydratase NJR02_20935 PF01026 TatD related DNase NJR02_20940 PF00902 Sec-independent protein translocase protein (TatC) NJR02_20945 PF02416 mttA/Hcf106 family NJR02_20950 PF02416 mttA/Hcf106 family NJR02_20955 PF03109 ABC1 family NJR02_20960 PF02036 SCP-2 sterol transfer family NJR02_20965 PF01209 ubiE/COQ5 methyltransferase family NJR02_20970 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NJR02_20975 PF07969 Amidohydrolase family NJR02_21010 PF03544 Gram-negative bacterial TonB protein C-terminal NJR02_21015 PF02472 Biopolymer transport protein ExbD/TolR NJR02_21020 PF01618 MotA/TolQ/ExbB proton channel family NJR02_21025 PF01618 MotA/TolQ/ExbB proton channel family NJR02_21035 PF00196 Bacterial regulatory proteins, luxR family NJR02_21035 PF03472 Autoinducer binding domain NJR02_21040 PF01380 SIS domain NJR02_21045 PF00455 DeoR C terminal sensor domain NJR02_21045 PF08220 DeoR-like helix-turn-helix domain NJR02_21050 PF00072 Response regulator receiver domain NJR02_21050 PF00486 Transcriptional regulatory protein, C terminal NJR02_21055 PF00672 HAMP domain NJR02_21055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_21055 PF00512 His Kinase A (phospho-acceptor) domain NJR02_21060 PF00905 Penicillin binding protein transpeptidase domain NJR02_21065 PF06123 Inner membrane protein CreD NJR02_21070 PF00132 Bacterial transferase hexapeptide (six repeats) NJR02_21070 PF12804 MobA-like NTP transferase domain NJR02_21070 PF14602 Hexapeptide repeat of succinyl-transferase NJR02_21075 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain NJR02_21075 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NJR02_21080 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NJR02_21080 PF02874 ATP synthase alpha/beta family, beta-barrel domain NJR02_21085 PF00231 ATP synthase NJR02_21090 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NJR02_21090 PF00306 ATP synthase alpha/beta chain, C terminal domain NJR02_21090 PF02874 ATP synthase alpha/beta family, beta-barrel domain NJR02_21095 PF00213 ATP synthase delta (OSCP) subunit NJR02_21100 PF00430 ATP synthase B/B' CF(0) NJR02_21105 PF00137 ATP synthase subunit C NJR02_21110 PF00119 ATP synthase A chain NJR02_21120 PF02195 ParB-like nuclease domain NJR02_21120 PF17762 HTH domain found in ParB protein NJR02_21125 PF13614 AAA domain NJR02_21130 PF02527 rRNA small subunit methyltransferase G NJR02_21135 PF01134 Glucose inhibited division protein A NJR02_21135 PF13932 GidA associated domain NJR02_21140 PF00258 Flavodoxin NJR02_21145 PF07715 TonB-dependent Receptor Plug Domain NJR02_21145 PF00593 TonB dependent receptor NJR02_21150 PF00005 ABC transporter NJR02_21155 PF00005 ABC transporter NJR02_21160 PF01497 Periplasmic binding protein NJR02_21165 PF01032 FecCD transport family NJR02_21170 PF01926 50S ribosome-binding GTPase NJR02_21170 PF12631 MnmE helical domain NJR02_21170 PF10396 GTP-binding protein TrmE N-terminus NJR02_21175 PF02096 60Kd inner membrane protein NJR02_21175 PF14849 YidC periplasmic domain NJR02_21180 PF01809 Putative membrane protein insertion efficiency factor NJR02_21185 PF00825 Ribonuclease P NJR02_21190 PF00468 Ribosomal protein L34 NJR02_21195 PF00005 ABC transporter NJR02_21200 PF00528 Binding-protein-dependent transport system inner membrane component NJR02_21205 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJR02_21210 PF00665 Integrase core domain NJR02_21215 PF01695 IstB-like ATP binding protein NJR02_21220 PF13808 DDE_Tnp_1-associated NJR02_21220 PF01609 Transposase DDE domain NJR02_21225 PF00665 Integrase core domain NJR02_21225 PF13936 Helix-turn-helix domain NJR02_21230 PF01641 SelR domain NJR02_21235 PF01625 Peptide methionine sulfoxide reductase NJR02_21240 PF02798 Glutathione S-transferase, N-terminal domain NJR02_21240 PF00043 Glutathione S-transferase, C-terminal domain NJR02_21255 PF08240 Alcohol dehydrogenase GroES-like domain NJR02_21255 PF00107 Zinc-binding dehydrogenase NJR02_21275 PF00174 Oxidoreductase molybdopterin binding domain NJR02_21280 PF00175 Oxidoreductase NAD-binding domain NJR02_21280 PF00970 Oxidoreductase FAD-binding domain NJR02_21280 PF00111 2Fe-2S iron-sulfur cluster binding domain NJR02_21285 PF00462 Glutaredoxin NJR02_21300 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NJR02_21310 PF07883 Cupin domain NJR02_21310 PF12833 Helix-turn-helix domain NJR02_21320 PF00239 Resolvase, N terminal domain NJR02_21320 PF02796 Helix-turn-helix domain of resolvase NJR02_21365 PF02411 MerT mercuric transport protein NJR02_21370 PF09278 MerR, DNA binding NJR02_21370 PF00376 MerR family regulatory protein NJR02_21380 PF02796 Helix-turn-helix domain of resolvase NJR02_21380 PF00239 Resolvase, N terminal domain NJR02_21385 PF13700 Domain of unknown function (DUF4158) NJR02_21385 PF01526 Tn3 transposase DDE domain NJR02_21440 PF01609 Transposase DDE domain NJR02_21440 PF05598 Transposase domain (DUF772) NJR02_21505 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase NJR02_21510 PF01636 Phosphotransferase enzyme family NJR02_21515 PF02796 Helix-turn-helix domain of resolvase NJR02_21515 PF00239 Resolvase, N terminal domain NJR02_21520 PF01526 Tn3 transposase DDE domain NJR02_21520 PF13700 Domain of unknown function (DUF4158) NJR02_21545 PF02899 Phage integrase, N-terminal SAM-like domain NJR02_21545 PF00589 Phage integrase family NJR02_21550 PF11740 Plasmid replication region DNA-binding N-term NJR02_21630 PF10124 Mu-like prophage major head subunit gpT NJR02_21635 PF10123 Mu-like prophage I protein NJR02_21655 PF06074 Protein of unknown function (DUF935) NJR02_21660 PF03237 Terminase-like family NJR02_21665 PF11985 Protein of unknown function (DUF3486) NJR02_21670 PF08461 Ribonuclease R winged-helix domain NJR02_21710 PF01610 Transposase NJR02_21710 PF13542 Helix-turn-helix domain of transposase family ISL3 NJR02_21710 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NJR02_21735 PF13542 Helix-turn-helix domain of transposase family ISL3 NJR02_21735 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NJR02_21735 PF01610 Transposase NJR02_21795 PF01609 Transposase DDE domain NJR02_21795 PF05598 Transposase domain (DUF772) NJR02_21920 PF05598 Transposase domain (DUF772) NJR02_21920 PF01609 Transposase DDE domain NJR02_21935 PF01609 Transposase DDE domain NJR02_21935 PF05598 Transposase domain (DUF772) NJR02_21965 PF00437 Type II/IV secretion system protein NJR02_21980 PF00263 Bacterial type II and III secretion system protein NJR02_21980 PF07655 Secretin N-terminal domain NJR02_22005 PF00816 H-NS histone family NJR02_22020 PF17762 HTH domain found in ParB protein NJR02_22020 PF02195 ParB-like nuclease domain NJR02_22025 PF02768 DNA polymerase III beta subunit, C-terminal domain NJR02_22025 PF02767 DNA polymerase III beta subunit, central domain NJR02_22025 PF00712 DNA polymerase III beta subunit, N-terminal domain NJR02_22065 PF18607 ParA helix turn helix domain NJR02_22065 PF13614 AAA domain NJR02_22140 PF00563 EAL domain NJR02_22200 PF02522 Aminoglycoside 3-N-acetyltransferase NJR02_22205 PF13610 DDE domain NJR02_22210 PF00589 Phage integrase family NJR02_22210 PF13495 Phage integrase, N-terminal SAM-like domain NJR02_22215 PF00186 Dihydrofolate reductase NJR02_22220 PF00893 Small Multidrug Resistance protein NJR02_22225 PF00809 Pterin binding enzyme NJR02_22240 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NJR02_22250 PF00753 Metallo-beta-lactamase superfamily NJR02_22285 PF00672 HAMP domain NJR02_22285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJR02_22285 PF00512 His Kinase A (phospho-acceptor) domain NJR02_22290 PF00905 Penicillin binding protein transpeptidase domain NJR02_22295 PF00893 Small Multidrug Resistance protein NJR02_22300 PF00809 Pterin binding enzyme NJR02_22315 PF03551 Transcriptional regulator PadR-like family NJR02_22325 PF13610 DDE domain NJR02_22340 PF01636 Phosphotransferase enzyme family NJR02_22355 PF13188 PAS domain NJR02_22355 PF00563 EAL domain NJR02_22355 PF00990 Diguanylate cyclase, GGDEF domain NJR02_22355 PF03707 Bacterial signalling protein N terminal repeat NJR02_22360 PF05052 MerE protein NJR02_22370 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NJR02_22370 PF00403 Heavy-metal-associated domain NJR02_22370 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJR02_22385 PF00376 MerR family regulatory protein NJR02_22385 PF09278 MerR, DNA binding NJR02_22390 PF02411 MerT mercuric transport protein NJR02_22395 PF00403 Heavy-metal-associated domain NJR02_22410 PF13737 Transposase DDE domain NJR02_22415 PF13700 Domain of unknown function (DUF4158) NJR02_22415 PF01526 Tn3 transposase DDE domain NJR02_22430 PF00239 Resolvase, N terminal domain NJR02_22430 PF02796 Helix-turn-helix domain of resolvase NJR02_22435 PF05052 MerE protein NJR02_22440 PF13411 MerR HTH family regulatory protein NJR02_22445 PF00403 Heavy-metal-associated domain NJR02_22445 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJR02_22445 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NJR02_22455 PF00403 Heavy-metal-associated domain NJR02_22460 PF02411 MerT mercuric transport protein NJR02_22465 PF00376 MerR family regulatory protein NJR02_22465 PF09278 MerR, DNA binding NJR02_22470 PF02796 Helix-turn-helix domain of resolvase NJR02_22470 PF00239 Resolvase, N terminal domain NJR02_22475 PF18790 KfrB protein NJR02_22480 PF08401 Domain of unknown function (DUF1738) NJR02_22480 PF18818 Metallopeptidase superfamily domain NJR02_22480 PF13362 Toprim domain NJR02_22495 PF01545 Cation efflux family NJR02_22500 PF01022 Bacterial regulatory protein, arsR family