locus-tag	class	description
NJR02_00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
NJR02_00010	COG0592	DNA-directed DNA polymerase activity
NJR02_00020	COG0187	DNA topoisomerase II activity
NJR02_00025	COG2207	Transcriptional regulator
NJR02_00030	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
NJR02_00035	COG0071	Belongs to the small heat shock protein (HSP20) family
NJR02_00040	COG0071	Belongs to the small heat shock protein (HSP20) family
NJR02_00045	COG3977	Valine--pyruvate aminotransferase
NJR02_00060	COG2814	Major facilitator Superfamily
NJR02_00065	COG0745	RESPONSE REGULATOR receiver
NJR02_00070	COG2205	protein histidine kinase activity
NJR02_00090	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
NJR02_00095	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NJR02_00095	COG4191	Histidine kinase
NJR02_00100	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NJR02_00105	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NJR02_00110	COG1309	transcriptional regulator
NJR02_00140	COG0561	phosphatase activity
NJR02_00145	COG2267	carboxylic ester hydrolase activity
NJR02_00150	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
NJR02_00155	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
NJR02_00160	COG1758	RNA polymerase activity
NJR02_00170	COG0859	PFAM glycosyl transferase family 9
NJR02_00175	COG3642	lipopolysaccharide core region biosynthetic process
NJR02_00215	COG0589	response to stress
NJR02_00220	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
NJR02_00225	COG3706	GGDEF domain
NJR02_00230	COG1528	Iron-storage protein
NJR02_00235	COG2081	HI0933 family
NJR02_00295	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
NJR02_00310	COG2223	nitrite transmembrane transporter activity
NJR02_00315	COG1280	lysine exporter protein (LysE YggA)
NJR02_00330	COG3039	Transposase
NJR02_00340	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NJR02_00340	COG2205	protein histidine kinase activity
NJR02_00345	COG2205	protein histidine kinase activity
NJR02_00345	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NJR02_00355	COG3275	phosphorelay sensor kinase activity
NJR02_00360	COG3279	Response regulator of the LytR AlgR family
NJR02_00365	COG2223	nitrite transmembrane transporter activity
NJR02_00370	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
NJR02_00375	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
NJR02_00420	COG0045	succinate-CoA ligase (ADP-forming) activity
NJR02_00420	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
NJR02_00420	COG1042	CoA-binding domain protein
NJR02_00430	COG0583	DNA-binding transcription factor activity
NJR02_00435	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
NJR02_00440	COG0166	Belongs to the GPI family
NJR02_00450	COG0668	transmembrane transport
NJR02_00460	COG1309	transcriptional regulator
NJR02_00465	COG0756	dUTP diphosphatase activity
NJR02_00470	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
NJR02_00475	COG2003	Belongs to the UPF0758 family
NJR02_00480	COG0227	Belongs to the bacterial ribosomal protein bL28 family
NJR02_00485	COG0267	Belongs to the bacterial ribosomal protein bL33 family
NJR02_00495	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
NJR02_00500	COG2990	Protein conserved in bacteria
NJR02_00505	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
NJR02_00510	COG0859	PFAM glycosyl transferase family 9
NJR02_00515	COG0463	Glycosyl transferase, family 2
NJR02_00520	COG0859	PFAM glycosyl transferase family 9
NJR02_00525	COG1519	Transferase
NJR02_00535	COG1561	YicC-like family, N-terminal region
NJR02_00540	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
NJR02_00545	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
NJR02_00560	COG3706	GGDEF domain
NJR02_00560	COG4251	negative regulation of phosphorylation
NJR02_00560	COG5001	Diguanylate cyclase
NJR02_00560	COG2203	Gaf domain
NJR02_00565	COG3084	Protein conserved in bacteria
NJR02_00575	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
NJR02_00580	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
NJR02_00585	COG3639	organic phosphonate transmembrane transporter activity
NJR02_00590	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
NJR02_00595	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
NJR02_00605	COG1335	isochorismatase
NJR02_00615	COG1683	Conserved Protein
NJR02_00620	COG0204	Acyl-transferase
NJR02_00625	COG0204	Acyl-transferase
NJR02_00630	COG0606	chelatase, subunit chli
NJR02_00640	COG3978	acetolactate synthase activity
NJR02_00650	COG0129	dihydroxy-acid dehydratase activity
NJR02_00670	COG1309	transcriptional regulator
NJR02_00675	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
NJR02_00680	COG0254	rRNA binding
NJR02_00685	COG0702	epimerase
NJR02_00690	COG0281	malic enzyme
NJR02_00700	COG2205	protein histidine kinase activity
NJR02_00710	COG0745	RESPONSE REGULATOR receiver
NJR02_00715	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
NJR02_00730	COG0366	Alpha amylase catalytic
NJR02_00745	COG0443	Heat shock 70 kDa protein
NJR02_00750	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
NJR02_00755	COG3045	CreA protein
NJR02_00775	COG0174	glutamine synthetase
NJR02_00795	COG3842	ATPase activity
NJR02_00800	COG1176	ABC-type spermidine putrescine transport system, permease component I
NJR02_00805	COG1177	transmembrane transport
NJR02_00810	COG2258	MOSC domain
NJR02_00825	COG2050	protein possibly involved in aromatic compounds catabolism
NJR02_00830	COG0514	ATP-dependent DNA helicase (RecQ)
NJR02_00840	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
NJR02_00850	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
NJR02_00855	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
NJR02_00860	COG2239	Acts as a magnesium transporter
NJR02_00865	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
NJR02_00865	COG1648	precorrin-2 dehydrogenase activity
NJR02_00870	COG2116	formate transmembrane transporter activity
NJR02_00880	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
NJR02_00885	COG0842	Transport permease protein
NJR02_00890	COG0842	Transport permease protein
NJR02_00895	COG1131	(ABC) transporter
NJR02_00900	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NJR02_00915	COG0477	Major facilitator Superfamily
NJR02_00920	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
NJR02_00925	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
NJR02_00945	COG1595	DNA-templated transcription, initiation
NJR02_00950	COG3806	Anti-sigma factor
NJR02_00955	COG1968	undecaprenyl-diphosphatase activity
NJR02_00960	COG0667	Aldo Keto reductase
NJR02_00965	COG2017	converts alpha-aldose to the beta-anomer
NJR02_00970	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
NJR02_00980	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
NJR02_00985	COG1609	Transcriptional regulator
NJR02_00995	COG3250	beta-galactosidase activity
NJR02_01035	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
NJR02_01040	COG1288	antiporter activity
NJR02_01045	COG1438	arginine binding
NJR02_01050	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
NJR02_01055	COG0540	Belongs to the ATCase OTCase family
NJR02_01090	COG3040	lipid binding
NJR02_01095	COG2207	Transcriptional regulator
NJR02_01100	COG1979	alcohol dehydrogenase
NJR02_01105	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
NJR02_01110	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
NJR02_01115	COG2964	Protein conserved in bacteria
NJR02_01120	COG3681	Belongs to the UPF0597 family
NJR02_01125	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
NJR02_01130	COG0564	pseudouridine synthase activity
NJR02_01140	COG0542	response to heat
NJR02_01145	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
NJR02_01150	COG2502	aspartate--ammonia ligase
NJR02_01155	COG1522	sequence-specific DNA binding
NJR02_01165	COG0517	IMP dehydrogenase activity
NJR02_01165	COG0516	GMP reductase activity
NJR02_01185	COG2205	protein histidine kinase activity
NJR02_01195	COG2204	response regulator
NJR02_01205	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
NJR02_01240	COG0243	molybdopterin cofactor binding
NJR02_01245	COG3005	denitrification pathway
NJR02_01250	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
NJR02_01255	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
NJR02_01260	COG0569	domain protein
NJR02_01265	COG0812	UDP-N-acetylmuramate dehydrogenase activity
NJR02_01290	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
NJR02_01305	COG0250	Participates in transcription elongation, termination and antitermination
NJR02_01310	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
NJR02_01315	COG0081	regulation of translation
NJR02_01320	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
NJR02_01325	COG0222	ribosome binding
NJR02_01330	COG0085	RNA polymerase activity
NJR02_01335	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
NJR02_01340	COG2964	Protein conserved in bacteria
NJR02_01345	COG0251	oxidation-reduction process
NJR02_01350	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
NJR02_01360	COG2168	tRNA wobble position uridine thiolation
NJR02_01365	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
NJR02_01370	COG0049	tRNA binding
NJR02_01375	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
NJR02_01380	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
NJR02_01385	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
NJR02_01415	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
NJR02_01420	COG2252	PERMEase
NJR02_01425	COG2376	Dihydroxyacetone kinase
NJR02_01430	COG1461	Dihydroxyacetone kinase
NJR02_01445	COG2801	Transposase and inactivated derivatives
NJR02_01460	COG0628	permease
NJR02_01465	COG0494	nUDIX hydrolase
NJR02_01485	COG0753	catalase activity
NJR02_01490	COG0456	acetyltransferase
NJR02_01520	COG3842	ATPase activity
NJR02_01530	COG1175	transmembrane transport
NJR02_01555	COG0583	DNA-binding transcription factor activity
NJR02_01565	COG1741	Belongs to the pirin family
NJR02_01570	COG2259	Doxx family
NJR02_01575	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
NJR02_01580	COG1074	ATP-dependent DNA helicase activity
NJR02_01585	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
NJR02_01600	COG0004	ammonium transporteR
NJR02_01605	COG0347	Belongs to the P(II) protein family
NJR02_01610	COG3706	GGDEF domain
NJR02_01640	COG1278	Cold shock
NJR02_01645	COG2801	Transposase and inactivated derivatives
NJR02_01665	COG2197	response regulator
NJR02_01670	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
NJR02_01675	COG3047	cAMP biosynthetic process
NJR02_01705	COG3135	benzoate transporter
NJR02_01710	COG1396	sequence-specific DNA binding
NJR02_01740	COG2926	Belongs to the UPF0265 family
NJR02_01750	COG3028	Belongs to the UPF0307 family
NJR02_01755	COG0312	modulator of DNA gyrase
NJR02_01760	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
NJR02_01765	COG5007	Belongs to the BolA IbaG family
NJR02_01775	COG2854	intermembrane phospholipid transfer
NJR02_01780	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
NJR02_01785	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
NJR02_01790	COG1127	ABC transporter
NJR02_01795	COG0517	IMP dehydrogenase activity
NJR02_01795	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
NJR02_01800	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
NJR02_01810	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
NJR02_01815	COG1137	ATPase activity
NJR02_01820	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
NJR02_01830	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
NJR02_01835	COG1660	Displays ATPase and GTPase activities
NJR02_01840	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
NJR02_01860	COG3964	amidohydrolase
NJR02_01890	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
NJR02_01895	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
NJR02_01905	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
NJR02_01910	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
NJR02_01915	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
NJR02_01920	COG0723	plastoquinol--plastocyanin reductase activity
NJR02_01925	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
NJR02_01930	COG2857	Cytochrome c1
NJR02_01935	COG0625	glutathione transferase activity
NJR02_01940	COG2969	positive regulation of protein catabolic process
NJR02_01945	COG2823	Periplasmic or secreted lipoprotein
NJR02_01950	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
NJR02_01955	COG0792	nuclease activity
NJR02_01960	COG3107	peptidoglycan biosynthetic process
NJR02_01965	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
NJR02_01990	COG1987	bacterial-type flagellum assembly
NJR02_02035	COG1677	Flagellar hook-basal body complex protein FliE
NJR02_02045	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
NJR02_02075	COG1261	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly
NJR02_02080	COG1815	bacterial-type flagellum-dependent cell motility
NJR02_02095	COG1749	Flagellar hook protein flgE
NJR02_02105	COG4786	Flagellar basal body rod
NJR02_02110	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
NJR02_02115	COG1706	bacterial-type flagellum-dependent cell motility
NJR02_02125	COG1256	bacterial-type flagellum assembly
NJR02_02125	COG4786	Flagellar basal body rod
NJR02_02130	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
NJR02_02145	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
NJR02_02150	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
NJR02_02155	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
NJR02_02180	COG1191	sigma factor activity
NJR02_02185	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
NJR02_02190	COG1360	Flagellar Motor Protein
NJR02_02200	COG0741	lytic transglycosylase activity
NJR02_02200	COG1388	LysM domain
NJR02_02210	COG2001	Belongs to the MraZ family
NJR02_02215	COG0275	rRNA processing
NJR02_02220	COG3116	cell division
NJR02_02225	COG0768	penicillin binding
NJR02_02230	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
NJR02_02235	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
NJR02_02240	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
NJR02_02245	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
NJR02_02250	COG0772	Belongs to the SEDS family
NJR02_02255	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
NJR02_02260	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
NJR02_02265	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
NJR02_02270	COG0849	cell division
NJR02_02275	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
NJR02_02280	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
NJR02_02290	COG0653	protein targeting
NJR02_02300	COG0494	nUDIX hydrolase
NJR02_02305	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
NJR02_02310	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
NJR02_02320	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
NJR02_02325	COG1459	type II secretion system
NJR02_02330	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
NJR02_02355	COG2186	Transcriptional regulator
NJR02_02360	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
NJR02_02365	COG0508	dehydrogenase complex catalyzes the overall conversion of
NJR02_02370	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
NJR02_02380	COG0840	transmembrane signaling receptor activity
NJR02_02385	COG0840	transmembrane signaling receptor activity
NJR02_02395	COG1049	propionate catabolic process, 2-methylcitrate cycle
NJR02_02400	COG2200	EAL domain
NJR02_02410	COG1280	lysine exporter protein (LysE YggA)
NJR02_02420	COG0523	cobalamin synthesis protein
NJR02_02425	COG0477	Major facilitator Superfamily
NJR02_02440	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
NJR02_02445	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
NJR02_02490	COG5006	permease, DMT superfamily
NJR02_02495	COG1522	sequence-specific DNA binding
NJR02_02500	COG0110	maltose O-acetyltransferase activity
NJR02_02505	COG0366	Alpha amylase catalytic
NJR02_02510	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
NJR02_02510	COG1263	PTS System
NJR02_02530	COG0252	asparaginase activity
NJR02_02545	COG1803	Methylglyoxal synthase
NJR02_02565	COG1444	tRNA N-acetyltransferase activity
NJR02_02570	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
NJR02_02570	COG1565	acr, cog1565
NJR02_02580	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
NJR02_02610	COG0109	protoheme IX farnesyltransferase activity
NJR02_02615	COG1012	belongs to the aldehyde dehydrogenase family
NJR02_02620	COG1177	transmembrane transport
NJR02_02625	COG1176	ABC-type spermidine putrescine transport system, permease component I
NJR02_02630	COG3842	ATPase activity
NJR02_02635	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
NJR02_02640	COG0583	DNA-binding transcription factor activity
NJR02_02645	COG1757	Na H antiporter
NJR02_02685	COG0297	glycogen (starch) synthase activity
NJR02_02690	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
NJR02_02695	COG2813	Specifically methylates the guanine in position
NJR02_02700	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
NJR02_02705	COG4251	negative regulation of phosphorylation
NJR02_02705	COG3706	GGDEF domain
NJR02_02705	COG2203	Gaf domain
NJR02_02705	COG5001	Diguanylate cyclase
NJR02_02710	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
NJR02_02720	COG2995	paraquat-inducible protein a
NJR02_02725	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
NJR02_02725	COG3008	intermembrane lipid transfer
NJR02_02730	COG3009	Protein conserved in bacteria
NJR02_02740	COG3240	lipase activity
NJR02_02755	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
NJR02_02760	COG1194	a g-specific adenine glycosylase
NJR02_02770	COG3267	Type II secretory pathway component ExeA
NJR02_02770	COG3409	Peptidoglycan-binding domain 1 protein
NJR02_02775	COG0617	tRNA 3'-terminal CCA addition
NJR02_02780	COG0306	phosphate transporter
NJR02_02785	COG1392	Phosphate transport regulator
NJR02_02790	COG3025	triphosphatase activity
NJR02_02795	COG3133	Outer membrane lipoprotein
NJR02_02800	COG0456	acetyltransferase
NJR02_02815	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
NJR02_02820	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
NJR02_02830	COG3031	protein transport across the cell outer membrane
NJR02_02840	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
NJR02_02845	COG1459	type II secretion system
NJR02_02850	COG2165	general secretion pathway protein
NJR02_02860	COG2165	general secretion pathway protein
NJR02_02865	COG4795	General secretion pathway protein
NJR02_02875	COG3156	type II secretion system protein K
NJR02_02885	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
NJR02_02900	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
NJR02_02915	COG1011	Hydrolase
NJR02_02920	COG0494	nUDIX hydrolase
NJR02_02925	COG1218	3'(2'),5'-bisphosphate nucleotidase
NJR02_02930	COG0814	amino acid
NJR02_02935	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
NJR02_02950	COG0626	cystathionine gamma-synthase activity
NJR02_02955	COG0460	homoserine dehydrogenase
NJR02_02955	COG0527	aspartate kinase activity
NJR02_02960	COG1346	cytolysis
NJR02_02965	COG1380	Effector of murein hydrolase LrgA
NJR02_02970	COG0583	DNA-binding transcription factor activity
NJR02_03005	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
NJR02_03010	COG5001	Diguanylate cyclase
NJR02_03010	COG5002	protein histidine kinase activity
NJR02_03010	COG3447	MASE1 domain protein
NJR02_03015	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
NJR02_03025	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
NJR02_03030	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
NJR02_03040	COG0137	argininosuccinate synthase activity
NJR02_03045	COG0165	Argininosuccinate lyase
NJR02_03055	COG0583	DNA-binding transcription factor activity
NJR02_03065	COG1942	4-Oxalocrotonate Tautomerase
NJR02_03095	COG0110	maltose O-acetyltransferase activity
NJR02_03100	COG3174	membrane
NJR02_03105	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NJR02_03110	COG1126	abc transporter atp-binding protein
NJR02_03115	COG0765	amino acid transport
NJR02_03120	COG0765	amino acid transport
NJR02_03125	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
NJR02_03130	COG1505	serine-type exopeptidase activity
NJR02_03140	COG1028	Short-chain dehydrogenase reductase Sdr
NJR02_03145	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
NJR02_03160	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
NJR02_03165	COG4991	sh3 domain protein
NJR02_03175	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
NJR02_03180	COG1940	carbohydrate kinase activity
NJR02_03185	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
NJR02_03190	COG0126	phosphoglycerate kinase activity
NJR02_03200	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
NJR02_03235	COG0583	DNA-binding transcription factor activity
NJR02_03245	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
NJR02_03255	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
NJR02_03260	COG1595	DNA-templated transcription, initiation
NJR02_03265	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
NJR02_03280	COG0481	GTPase activity
NJR02_03285	COG0681	Belongs to the peptidase S26 family
NJR02_03290	COG0571	ribonuclease III activity
NJR02_03300	COG1381	Involved in DNA repair and RecF pathway recombination
NJR02_03305	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
NJR02_03310	COG3023	N-Acetylmuramoyl-L-alanine amidase
NJR02_03315	COG4807	Protein conserved in bacteria
NJR02_03325	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
NJR02_03330	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
NJR02_03335	COG3956	TIGRFAM MazG family protein
NJR02_03340	COG0504	CTP synthase activity
NJR02_03345	COG0148	phosphopyruvate hydratase activity
NJR02_03350	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
NJR02_03355	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
NJR02_03365	COG0585	pseudouridine synthase activity
NJR02_03370	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
NJR02_03375	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
NJR02_03380	COG1238	metal cluster binding
NJR02_03385	COG1388	LysM domain
NJR02_03385	COG4942	peptidase
NJR02_03395	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
NJR02_03400	COG0828	Belongs to the bacterial ribosomal protein bS21 family
NJR02_03405	COG1610	YqeY-like protein
NJR02_03410	COG0358	DNA primase activity
NJR02_03415	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
NJR02_03430	COG3039	Transposase
NJR02_03470	COG0138	bifunctional purine biosynthesis protein purh
NJR02_03485	COG3036	rescue of stalled ribosome
NJR02_03490	COG0635	Involved in the biosynthesis of porphyrin-containing compound
NJR02_03495	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
NJR02_03505	COG0673	inositol 2-dehydrogenase activity
NJR02_03515	COG1585	Membrane protein implicated in regulation of membrane protease activity
NJR02_03520	COG0330	HflC and HflK could
NJR02_03525	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
NJR02_03525	COG1648	precorrin-2 dehydrogenase activity
NJR02_03530	COG0175	sulfate reduction
NJR02_03535	COG2895	sulfate adenylyltransferase (ATP) activity
NJR02_03540	COG0471	metal ion transport
NJR02_03540	COG3273	potassium ion transport
NJR02_03545	COG0529	Catalyzes the synthesis of activated sulfate
NJR02_03550	COG3039	Transposase
NJR02_03575	COG1136	(ABC) transporter
NJR02_03590	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
NJR02_03605	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
NJR02_03610	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
NJR02_03615	COG0163	prenyltransferase activity
NJR02_03630	COG1131	(ABC) transporter
NJR02_03635	COG0842	Transport permease protein
NJR02_03645	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
NJR02_03650	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
NJR02_03655	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
NJR02_03665	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
NJR02_03670	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
NJR02_03675	COG1489	DNA binding
NJR02_03685	COG1643	Atp-dependent helicase
NJR02_03690	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
NJR02_03695	COG0346	lactoylglutathione lyase activity
NJR02_03705	COG2076	Multidrug Resistance protein
NJR02_03710	COG0583	DNA-binding transcription factor activity
NJR02_03720	COG0671	phosphoesterase, PA-phosphatase related
NJR02_03735	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
NJR02_03740	COG0038	chloride channel
NJR02_03750	COG0316	Belongs to the HesB IscA family
NJR02_03775	COG1280	lysine exporter protein (LysE YggA)
NJR02_03780	COG0582	viral genome integration into host DNA
NJR02_03835	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
NJR02_03850	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NJR02_03880	COG0745	RESPONSE REGULATOR receiver
NJR02_03885	COG3104	oligopeptide transport
NJR02_03890	COG1210	Utp--glucose-1-phosphate uridylyltransferase
NJR02_03895	COG1555	photosystem II stabilization
NJR02_03905	COG2350	Protein conserved in bacteria
NJR02_03910	COG2917	probably involved in intracellular septation
NJR02_03915	COG0076	glutamate decarboxylase activity
NJR02_03920	COG1272	protein, Hemolysin III
NJR02_03925	COG0569	domain protein
NJR02_03925	COG2985	domain, Protein
NJR02_03935	COG0477	Major facilitator Superfamily
NJR02_03940	COG0583	DNA-binding transcription factor activity
NJR02_03945	COG3227	Zinc metalloprotease (Elastase)
NJR02_03950	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
NJR02_03955	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
NJR02_03965	COG2731	YhcH YjgK YiaL family protein
NJR02_03975	COG0668	transmembrane transport
NJR02_03985	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
NJR02_03995	COG0789	Transcriptional regulator
NJR02_04040	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
NJR02_04050	COG0488	(ABC) transporter
NJR02_04055	COG0517	IMP dehydrogenase activity
NJR02_04055	COG0516	GMP reductase activity
NJR02_04065	COG0835	chemotaxis
NJR02_04065	COG0784	Response regulator, receiver
NJR02_04070	COG2755	lipolytic protein G-D-S-L family
NJR02_04075	COG4181	ATPase activity
NJR02_04080	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
NJR02_04085	COG1090	epimerase
NJR02_04090	COG2200	EAL domain
NJR02_04095	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
NJR02_04100	COG2234	aminopeptidase activity
NJR02_04105	COG0220	tRNA (guanine-N7-)-methyltransferase activity
NJR02_04110	COG3171	Protein conserved in bacteria
NJR02_04115	COG2066	Belongs to the glutaminase family
NJR02_04120	COG2897	thiosulfate sulfurtransferase activity
NJR02_04125	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
NJR02_04160	COG1132	(ABC) transporter
NJR02_04185	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
NJR02_04190	COG3300	MHYT domain
NJR02_04190	COG5001	Diguanylate cyclase
NJR02_04210	COG4628	conserved protein (DUF2132)
NJR02_04215	COG0688	phosphatidylethanolamine metabolic process
NJR02_04220	COG1162	GTPase activity
NJR02_04225	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
NJR02_04260	COG1278	Cold shock
NJR02_04270	COG0840	transmembrane signaling receptor activity
NJR02_04275	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
NJR02_04280	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
NJR02_04330	COG0848	biopolymer transport protein
NJR02_04335	COG0811	peptide transport
NJR02_04340	COG0811	peptide transport
NJR02_04350	COG4206	TonB-dependent receptor
NJR02_04360	COG4174	ABC transporter (Permease)
NJR02_04365	COG4239	(ABC) transporter, permease
NJR02_04375	COG0444	Belongs to the ABC transporter superfamily
NJR02_04380	COG4608	Belongs to the ABC transporter superfamily
NJR02_04385	COG2195	Cleaves the N-terminal amino acid of tripeptides
NJR02_04390	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
NJR02_04395	COG1073	alpha beta
NJR02_04410	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
NJR02_04435	COG0243	molybdopterin cofactor binding
NJR02_04440	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
NJR02_04440	COG1648	precorrin-2 dehydrogenase activity
NJR02_04450	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
NJR02_04450	COG1116	anion transmembrane transporter activity
NJR02_04455	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
NJR02_04460	COG1116	anion transmembrane transporter activity
NJR02_04465	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
NJR02_04465	COG2146	nitrite reductase [NAD(P)H] activity
NJR02_04470	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
NJR02_04470	COG2146	nitrite reductase [NAD(P)H] activity
NJR02_04475	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
NJR02_04480	COG2313	pseudouridylate synthase activity
NJR02_04500	COG0521	Mo-molybdopterin cofactor biosynthetic process
NJR02_04510	COG2966	Psort location CytoplasmicMembrane, score
NJR02_04515	COG3610	response to peptide
NJR02_04525	COG4175	Glycine betaine
NJR02_04530	COG4176	ABC-type proline glycine betaine transport system permease component
NJR02_04535	COG2113	Glycine betaine
NJR02_04540	COG0175	sulfate reduction
NJR02_04545	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
NJR02_04550	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
NJR02_04555	COG0384	phenazine biosynthesis protein PhzF
NJR02_04560	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
NJR02_04575	COG0786	glutamate:sodium symporter activity
NJR02_04580	COG0252	asparaginase activity
NJR02_04585	COG3139	Protein of unknown function (DUF1315)
NJR02_04605	COG0616	signal peptide processing
NJR02_04610	COG0446	pyridine nucleotide-disulphide oxidoreductase
NJR02_04610	COG1902	pentaerythritol trinitrate reductase activity
NJR02_04615	COG0778	Nitroreductase
NJR02_04635	COG2264	protein methyltransferase activity
NJR02_04640	COG0604	alcohol dehydrogenase
NJR02_04645	COG0583	DNA-binding transcription factor activity
NJR02_04650	COG1263	PTS System
NJR02_04650	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
NJR02_04650	COG2190	(PTS) system
NJR02_04655	COG4145	pantothenate transmembrane transporter activity
NJR02_04660	COG3924	membrane
NJR02_04665	COG0439	Biotin carboxylase
NJR02_04670	COG0511	ligase activity, forming carbon-carbon bonds
NJR02_04675	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
NJR02_04680	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
NJR02_04695	COG3381	protein complex oligomerization
NJR02_04705	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
NJR02_04715	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
NJR02_04720	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
NJR02_04720	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
NJR02_04735	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
NJR02_04740	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
NJR02_04745	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
NJR02_04750	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
NJR02_04755	COG4172	Belongs to the ABC transporter superfamily
NJR02_04765	COG0601	transmembrane transport
NJR02_04770	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
NJR02_04775	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
NJR02_04780	COG0142	geranyltranstransferase activity
NJR02_04785	COG1722	exodeoxyribonuclease VII activity
NJR02_04790	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
NJR02_04795	COG1360	Flagellar Motor Protein
NJR02_04810	COG1534	Rna-binding protein
NJR02_04815	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
NJR02_04825	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
NJR02_04830	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
NJR02_04835	COG0149	triose-phosphate isomerase activity
NJR02_04840	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
NJR02_04855	COG0779	Required for maturation of 30S ribosomal subunits
NJR02_04860	COG0195	Participates in both transcription termination and antitermination
NJR02_04865	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
NJR02_04870	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
NJR02_04875	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
NJR02_04880	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
NJR02_04885	COG1185	polyribonucleotide nucleotidyltransferase activity
NJR02_04890	COG2211	Major facilitator Superfamily
NJR02_04895	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
NJR02_04900	COG1422	Protein of unknown function (DUF1090)
NJR02_04910	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
NJR02_04915	COG0826	peptidase U32
NJR02_04930	COG0312	modulator of DNA gyrase
NJR02_04935	COG0312	modulator of DNA gyrase
NJR02_04945	COG4974	Belongs to the 'phage' integrase family
NJR02_04950	COG1970	mechanosensitive ion channel activity
NJR02_04960	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
NJR02_04965	COG0789	Transcriptional regulator
NJR02_04980	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
NJR02_04990	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
NJR02_04995	COG0321	lipoyl(octanoyl) transferase activity
NJR02_05000	COG2921	Belongs to the UPF0250 family
NJR02_05005	COG1686	Belongs to the peptidase S11 family
NJR02_05010	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
NJR02_05015	COG2951	lytic endotransglycosylase activity
NJR02_05020	COG0772	Belongs to the SEDS family
NJR02_05025	COG0768	penicillin binding
NJR02_05030	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
NJR02_05035	COG0799	negative regulation of ribosome biogenesis
NJR02_05040	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
NJR02_05055	COG0495	leucyl-tRNA aminoacylation
NJR02_05060	COG2888	peptidyl-tyrosine sulfation
NJR02_05065	COG0815	Transfers the fatty acyl group on membrane lipoproteins
NJR02_05070	COG4535	Mg2 and Co2 transporter CorC
NJR02_05075	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
NJR02_05080	COG1702	phosphate starvation-inducible protein PhoH
NJR02_05085	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
NJR02_05090	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
NJR02_05095	COG1335	isochorismatase
NJR02_05100	COG1278	Cold shock
NJR02_05115	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
NJR02_05120	COG2199	diguanylate cyclase activity
NJR02_05130	COG2199	diguanylate cyclase activity
NJR02_05140	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
NJR02_05165	COG2011	ABC-type metal ion transport system permease component
NJR02_05170	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
NJR02_05180	COG0516	GMP reductase activity
NJR02_05185	COG0189	ligase activity
NJR02_05185	COG4067	protein conserved in archaea
NJR02_05205	COG0300	oxidoreductase activity
NJR02_05225	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
NJR02_05230	COG3214	Protein conserved in bacteria
NJR02_05245	COG3080	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
NJR02_05250	COG3029	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
NJR02_05255	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
NJR02_05260	COG1053	succinate dehydrogenase
NJR02_05270	COG0584	glycerophosphoryl diester phosphodiesterase
NJR02_05275	COG1511	domain protein
NJR02_05275	COG3264	Mechanosensitive ion channel
NJR02_05285	COG0739	heme binding
NJR02_05300	COG0583	DNA-binding transcription factor activity
NJR02_05315	COG0583	DNA-binding transcription factor activity
NJR02_05320	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
NJR02_05350	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
NJR02_05355	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
NJR02_05365	COG0338	D12 class N6 adenine-specific DNA methyltransferase
NJR02_05370	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
NJR02_05375	COG0546	phosphoglycolate phosphatase activity
NJR02_05380	COG0180	Tryptophanyl-tRNA synthetase
NJR02_05395	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
NJR02_05405	COG1012	belongs to the aldehyde dehydrogenase family
NJR02_05420	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
NJR02_05440	COG0657	acetylesterase activity
NJR02_05450	COG0490	domain, Protein
NJR02_05450	COG0471	metal ion transport
NJR02_05495	COG0012	GTP binding
NJR02_05500	COG0193	aminoacyl-tRNA hydrolase activity
NJR02_05505	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
NJR02_05515	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
NJR02_05520	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
NJR02_05525	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
NJR02_05530	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
NJR02_05535	COG2890	protein-(glutamine-N5) methyltransferase activity
NJR02_05545	COG2912	Transglutaminase-like superfamily
NJR02_05550	COG2877	3-deoxy-8-phosphooctulonate synthase activity
NJR02_05555	COG1301	dicarboxylic acid transport
NJR02_05565	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
NJR02_05580	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
NJR02_05585	COG1115	amino acid carrier protein
NJR02_05605	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
NJR02_05615	COG0189	ligase activity
NJR02_05620	COG1385	rRNA (uridine-N3-)-methyltransferase activity
NJR02_05630	COG3091	SprT-like family
NJR02_05640	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
NJR02_05665	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
NJR02_05670	COG0739	heme binding
NJR02_05675	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
NJR02_05680	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
NJR02_05680	COG3408	Glycogen debranching enzyme
NJR02_05690	COG1881	PFAM PEBP family protein
NJR02_05695	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
NJR02_05700	COG0583	DNA-binding transcription factor activity
NJR02_05710	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
NJR02_05720	COG0583	DNA-binding transcription factor activity
NJR02_05725	COG1028	Short-chain dehydrogenase reductase Sdr
NJR02_05730	COG0616	signal peptide processing
NJR02_05735	COG3724	N-succinylarginine dihydrolase activity
NJR02_05760	COG0840	transmembrane signaling receptor activity
NJR02_05770	COG2971	BadF BadG BcrA BcrD
NJR02_05780	COG4608	Belongs to the ABC transporter superfamily
NJR02_05785	COG0444	Belongs to the ABC transporter superfamily
NJR02_05790	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
NJR02_05805	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
NJR02_05840	COG5642	Protein of unknown function (DUF2384)
NJR02_05845	COG1538	Outer membrane efflux protein
NJR02_05850	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NJR02_05855	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NJR02_05865	COG0745	RESPONSE REGULATOR receiver
NJR02_05870	COG5002	protein histidine kinase activity
NJR02_05880	COG0789	Transcriptional regulator
NJR02_05930	COG0640	Transcriptional regulator
NJR02_05935	COG0798	PFAM Bile acid sodium symporter
NJR02_05940	COG1393	Belongs to the ArsC family
NJR02_05950	COG1677	Flagellar hook-basal body complex protein FliE
NJR02_05960	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
NJR02_06015	COG1684	flagellar biosynthetic protein fliR
NJR02_06025	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
NJR02_06050	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
NJR02_06055	COG0643	Histidine kinase
NJR02_06055	COG0784	Response regulator, receiver
NJR02_06055	COG2198	Histidine kinase
NJR02_06060	COG2201	protein-glutamate methylesterase activity
NJR02_06065	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
NJR02_06070	COG1360	Flagellar Motor Protein
NJR02_06075	COG1192	Involved in chromosome partitioning
NJR02_06085	COG0835	chemotaxis
NJR02_06100	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
NJR02_06105	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
NJR02_06110	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
NJR02_06115	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
NJR02_06120	COG1138	Cytochrome C-type biogenesis protein
NJR02_06125	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
NJR02_06150	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
NJR02_06155	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
NJR02_06155	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
NJR02_06170	COG0259	pyridoxamine-phosphate oxidase activity
NJR02_06200	COG3153	acetyltransferase
NJR02_06215	COG0800	Aldolase
NJR02_06240	COG3039	Transposase
NJR02_06265	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
NJR02_06305	COG3039	Transposase
NJR02_06335	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
NJR02_06345	COG4584	PFAM Integrase catalytic
NJR02_06350	COG1484	DNA-dependent DNA replication
NJR02_06355	COG3039	Transposase
NJR02_06360	COG0582	viral genome integration into host DNA
NJR02_06370	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
NJR02_06375	COG2867	negative regulation of translational initiation
NJR02_06380	COG2914	Belongs to the UPF0125 (RnfH) family
NJR02_06385	COG0702	epimerase
NJR02_06390	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
NJR02_06395	COG1454	alcohol dehydrogenase
NJR02_06410	COG1957	nucleoside hydrolase
NJR02_06435	COG1280	lysine exporter protein (LysE YggA)
NJR02_06445	COG3263	regulation of cellular component size
NJR02_06455	COG1876	peptidase activity
NJR02_06460	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
NJR02_06465	COG1393	Belongs to the ArsC family
NJR02_06470	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
NJR02_06480	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
NJR02_06490	COG3039	Transposase
NJR02_06500	COG3039	Transposase
NJR02_06525	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
NJR02_06530	COG0017	Asparaginyl-tRNA synthetase
NJR02_06550	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
NJR02_06555	COG0156	8-amino-7-oxononanoate synthase activity
NJR02_06560	COG2226	methyltransferase
NJR02_06560	COG1073	alpha beta
NJR02_06565	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
NJR02_06570	COG0501	Belongs to the peptidase M48B family
NJR02_06575	COG0633	Ferredoxin
NJR02_06575	COG3217	Mosc domain protein beta barrel domain protein
NJR02_06575	COG0633	Ferredoxin
NJR02_06575	COG3217	Mosc domain protein beta barrel domain protein
NJR02_06585	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
NJR02_06585	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
NJR02_06585	COG0674	pyruvate-flavodoxin oxidoreductase activity
NJR02_06585	COG1013	pyruvate-flavodoxin oxidoreductase activity
NJR02_06590	COG2841	Protein conserved in bacteria
NJR02_06600	COG0534	Mate efflux family protein
NJR02_06625	COG1454	alcohol dehydrogenase
NJR02_06635	COG1309	transcriptional regulator
NJR02_06650	COG0791	NLP P60 protein
NJR02_06655	COG0583	DNA-binding transcription factor activity
NJR02_06675	COG0500	methyltransferase
NJR02_06680	COG4106	trans-aconitate 2-methyltransferase activity
NJR02_06685	COG1801	Protein of unknown function DUF72
NJR02_06690	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
NJR02_06695	COG0217	transcriptional regulatory protein
NJR02_06700	COG2194	sulfuric ester hydrolase activity
NJR02_06705	COG1940	carbohydrate kinase activity
NJR02_06705	COG1846	Transcriptional regulator
NJR02_06710	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
NJR02_06715	COG0363	glucosamine-6-phosphate deaminase activity
NJR02_06720	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
NJR02_06720	COG1263	PTS System
NJR02_06720	COG2190	(PTS) system
NJR02_06730	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
NJR02_06735	COG0735	belongs to the Fur family
NJR02_06745	COG0716	FMN binding
NJR02_06760	COG0596	Alpha beta hydrolase
NJR02_06765	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
NJR02_06770	COG0033	Phosphoglucomutase
NJR02_06780	COG1846	Transcriptional regulator
NJR02_06785	COG2951	lytic endotransglycosylase activity
NJR02_06790	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
NJR02_06795	COG4136	ATPase activity
NJR02_06805	COG4134	Bacterial extracellular solute-binding protein
NJR02_06810	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
NJR02_06815	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
NJR02_06825	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
NJR02_06835	COG0729	surface antigen
NJR02_06860	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
NJR02_06870	COG0741	lytic transglycosylase activity
NJR02_06885	COG1607	acyl-coa hydrolase
NJR02_06900	COG1388	LysM domain
NJR02_06900	COG0741	lytic transglycosylase activity
NJR02_06910	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
NJR02_06915	COG2226	methyltransferase
NJR02_06920	COG0328	RNA-DNA hybrid ribonuclease activity
NJR02_06925	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
NJR02_06935	COG3437	response regulator, receiver
NJR02_06935	COG0784	Response regulator, receiver
NJR02_06940	COG1960	acyl-CoA dehydrogenase activity
NJR02_06945	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
NJR02_06950	COG0121	glutamine amidotransferase
NJR02_06960	COG0391	Required for morphogenesis under gluconeogenic growth conditions
NJR02_06985	COG2197	response regulator
NJR02_06990	COG3850	Histidine kinase
NJR02_06995	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
NJR02_07000	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
NJR02_07000	COG1149	4fe-4S ferredoxin, iron-sulfur binding domain protein
NJR02_07010	COG0243	molybdopterin cofactor binding
NJR02_07015	COG0437	4 iron, 4 sulfur cluster binding
NJR02_07020	COG0348	domain, Protein
NJR02_07030	COG3005	denitrification pathway
NJR02_07035	COG0521	Mo-molybdopterin cofactor biosynthetic process
NJR02_07040	COG0315	cyclic pyranopterin monophosphate synthase activity
NJR02_07045	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
NJR02_07050	COG0314	molybdopterin synthase activity
NJR02_07065	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
NJR02_07070	COG2267	carboxylic ester hydrolase activity
NJR02_07085	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
NJR02_07095	COG0302	gtp cyclohydrolase
NJR02_07100	COG0840	transmembrane signaling receptor activity
NJR02_07105	COG2759	Belongs to the formate--tetrahydrofolate ligase family
NJR02_07115	COG0583	DNA-binding transcription factor activity
NJR02_07130	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
NJR02_07145	COG2195	Cleaves the N-terminal amino acid of tripeptides
NJR02_07150	COG1166	arginine decarboxylase activity
NJR02_07180	COG3039	Transposase
NJR02_07200	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
NJR02_07205	COG1187	pseudouridine synthase activity
NJR02_07210	COG2807	transmembrane transport
NJR02_07220	COG0583	DNA-binding transcription factor activity
NJR02_07235	COG1607	acyl-coa hydrolase
NJR02_07240	COG2979	Protein of unknown function (DUF533)
NJR02_07250	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
NJR02_07255	COG1271	oxidase subunit
NJR02_07260	COG1294	oxidase, subunit
NJR02_07270	COG2814	Major facilitator Superfamily
NJR02_07275	COG0656	L-ascorbic acid biosynthetic process
NJR02_07285	COG3039	Transposase
NJR02_07300	COG0583	DNA-binding transcription factor activity
NJR02_07305	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
NJR02_07310	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
NJR02_07315	COG2271	Major facilitator Superfamily
NJR02_07320	COG1349	DNA-binding transcription factor activity
NJR02_07330	COG0584	glycerophosphoryl diester phosphodiesterase
NJR02_07335	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
NJR02_07340	COG1605	Chorismate mutase
NJR02_07340	COG0287	Prephenate dehydrogenase
NJR02_07350	COG3085	chromosome segregation
NJR02_07355	COG4574	serine-type endopeptidase inhibitor activity
NJR02_07375	COG1770	oligopeptidase
NJR02_07380	COG4771	TonB-dependent receptor
NJR02_07385	COG3083	sulfuric ester hydrolase activity
NJR02_07390	COG3082	Protein of unknown function (DUF1414)
NJR02_07395	COG3081	Nucleoid-associated protein
NJR02_07405	COG1175	transmembrane transport
NJR02_07410	COG3833	ABC-type maltose transport systems, permease component
NJR02_07415	COG3842	ATPase activity
NJR02_07425	COG0596	Alpha beta hydrolase
NJR02_07440	COG0425	Belongs to the sulfur carrier protein TusA family
NJR02_07445	COG4783	chaperone-mediated protein folding
NJR02_07455	COG1393	Belongs to the ArsC family
NJR02_07480	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NJR02_07485	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
NJR02_07490	COG2431	L-lysine efflux transmembrane transporter activity
NJR02_07500	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NJR02_07510	COG4160	amino acid transport
NJR02_07520	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
NJR02_07530	COG0446	pyridine nucleotide-disulphide oxidoreductase
NJR02_07545	COG1566	PFAM secretion protein HlyD family protein
NJR02_07555	COG0628	permease
NJR02_07560	COG2373	Large extracellular alpha-helical protein
NJR02_07565	COG4953	penicillin-binding protein 1C
NJR02_07575	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
NJR02_07575	COG0301	tRNA thio-modification
NJR02_07590	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
NJR02_07595	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
NJR02_07600	COG1334	flagellar protein FlaG
NJR02_07630	COG2089	acid synthase
NJR02_07645	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
NJR02_07650	COG1861	Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase
NJR02_07660	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
NJR02_07665	COG1086	Polysaccharide biosynthesis protein
NJR02_07670	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
NJR02_07680	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
NJR02_07700	COG0346	lactoylglutathione lyase activity
NJR02_07705	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
NJR02_07710	COG4660	Part of a membrane complex involved in electron transport
NJR02_07715	COG4659	FMN binding
NJR02_07720	COG4658	electron transport chain
NJR02_07725	COG4656	Part of a membrane complex involved in electron transport
NJR02_07730	COG2878	Part of a membrane complex involved in electron transport
NJR02_07735	COG4657	Part of a membrane complex involved in electron transport
NJR02_07740	COG0697	spore germination
NJR02_07765	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
NJR02_07770	COG1288	antiporter activity
NJR02_07775	COG0436	Aminotransferase
NJR02_07785	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
NJR02_07790	COG2027	D-alanyl-D-alanine carboxypeptidase
NJR02_07795	COG1061	Type III restriction enzyme res subunit
NJR02_07800	COG1566	PFAM secretion protein HlyD family protein
NJR02_07810	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
NJR02_07810	COG3264	Mechanosensitive ion channel
NJR02_07815	COG1966	Carbon starvation protein
NJR02_07820	COG3279	Response regulator of the LytR AlgR family
NJR02_07825	COG3275	phosphorelay sensor kinase activity
NJR02_07835	COG1454	alcohol dehydrogenase
NJR02_07835	COG1012	belongs to the aldehyde dehydrogenase family
NJR02_07840	COG2095	MarC family integral membrane protein
NJR02_07850	COG0601	transmembrane transport
NJR02_07855	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
NJR02_07860	COG0444	Belongs to the ABC transporter superfamily
NJR02_07870	COG0861	Integral membrane protein TerC family
NJR02_07875	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
NJR02_07885	COG1301	dicarboxylic acid transport
NJR02_07905	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
NJR02_07920	COG0537	adenosine 5'-monophosphoramidase activity
NJR02_07955	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
NJR02_07960	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
NJR02_07975	COG2354	Protein conserved in bacteria
NJR02_07980	COG1164	Oligoendopeptidase f
NJR02_07985	COG1164	Oligoendopeptidase f
NJR02_07990	COG3150	esterase
NJR02_07995	COG1252	NADH dehydrogenase
NJR02_08000	COG0393	Putative heavy-metal-binding
NJR02_08005	COG1368	sulfuric ester hydrolase activity
NJR02_08015	COG0527	aspartate kinase activity
NJR02_08020	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
NJR02_08020	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
NJR02_08025	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
NJR02_08050	COG0583	DNA-binding transcription factor activity
NJR02_08055	COG1620	l-lactate permease
NJR02_08060	COG0247	lactate metabolic process
NJR02_08065	COG1139	Iron-sulfur cluster binding protein
NJR02_08085	COG3039	Transposase
NJR02_08095	COG0577	efflux transmembrane transporter activity
NJR02_08100	COG1136	(ABC) transporter
NJR02_08120	COG2814	Major facilitator Superfamily
NJR02_08145	COG0672	)-iron permease
NJR02_08180	COG2308	Evidence 4 Homologs of previously reported genes of
NJR02_08200	COG0659	secondary active sulfate transmembrane transporter activity
NJR02_08215	COG4974	Belongs to the 'phage' integrase family
NJR02_08230	COG3039	Transposase
NJR02_08235	COG3039	Transposase
NJR02_08245	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
NJR02_08250	COG0326	Molecular chaperone. Has ATPase activity
NJR02_08260	COG0563	adenylate kinase activity
NJR02_08265	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
NJR02_08270	COG3788	relative of glutathione S-transferase, MAPEG superfamily
NJR02_08275	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
NJR02_08280	COG0840	transmembrane signaling receptor activity
NJR02_08295	COG3300	MHYT domain
NJR02_08295	COG5001	Diguanylate cyclase
NJR02_08320	COG1021	2,3-dihydroxybenzoate-AMP ligase
NJR02_08325	COG3433	isochorismatase activity
NJR02_08325	COG1535	isochorismatase
NJR02_08330	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
NJR02_08335	COG1028	Short-chain dehydrogenase reductase Sdr
NJR02_08345	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
NJR02_08360	COG1120	ATPase activity
NJR02_08365	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
NJR02_08370	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
NJR02_08375	COG4771	TonB-dependent receptor
NJR02_08420	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
NJR02_08425	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
NJR02_08430	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
NJR02_08435	COG0861	Integral membrane protein TerC family
NJR02_08450	COG1022	Amp-dependent synthetase and ligase
NJR02_08455	COG0295	cytidine deaminase activity
NJR02_08460	COG1346	cytolysis
NJR02_08465	COG1380	Effector of murein hydrolase LrgA
NJR02_08490	COG2925	Exonuclease
NJR02_08505	COG1085	galactose-1-phosphate uridylyltransferase
NJR02_08510	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
NJR02_08515	COG1609	Transcriptional regulator
NJR02_08520	COG4580	involved in the transport of maltose and maltodextrins
NJR02_08545	COG2182	Extracellular solute-binding protein
NJR02_08550	COG1175	transmembrane transport
NJR02_08555	COG3833	ABC-type maltose transport systems, permease component
NJR02_08560	COG3867	Arabinogalactan endo-beta-1,4-galactanase
NJR02_08565	COG1874	Beta-galactosidase
NJR02_08570	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
NJR02_08570	COG1263	PTS System
NJR02_08590	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
NJR02_08595	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
NJR02_08595	COG0392	lysyltransferase activity
NJR02_08610	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
NJR02_08615	COG0436	Aminotransferase
NJR02_08620	COG0583	DNA-binding transcription factor activity
NJR02_08625	COG2160	L-arabinose isomerase activity
NJR02_08635	COG1069	ribulokinase activity
NJR02_08640	COG1879	ABC-type sugar transport system periplasmic component
NJR02_08645	COG1129	ABC transporter
NJR02_08650	COG1172	Belongs to the binding-protein-dependent transport system permease family
NJR02_08660	COG0257	Belongs to the bacterial ribosomal protein bL36 family
NJR02_08665	COG0254	rRNA binding
NJR02_08680	COG1451	nucleotide metabolic process
NJR02_08695	COG3069	C4-dicarboxylate transmembrane transporter activity
NJR02_08705	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
NJR02_08705	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
NJR02_08710	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
NJR02_08730	COG2009	succinate dehydrogenase
NJR02_08735	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
NJR02_08750	COG0567	Dehydrogenase, E1 component
NJR02_08755	COG0508	dehydrogenase complex catalyzes the overall conversion of
NJR02_08760	COG0045	succinate-CoA ligase (ADP-forming) activity
NJR02_08765	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
NJR02_08775	COG2983	Belongs to the UPF0260 family
NJR02_08780	COG1882	Formate acetyltransferase
NJR02_08785	COG2116	formate transmembrane transporter activity
NJR02_08790	COG1944	ATP diphosphatase activity
NJR02_08805	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
NJR02_08810	COG1278	Cold shock
NJR02_08815	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
NJR02_08820	COG0542	response to heat
NJR02_08825	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
NJR02_08830	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
NJR02_08835	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
NJR02_08840	COG3134	Outer membrane lipoprotein
NJR02_08845	COG3706	GGDEF domain
NJR02_08850	COG0492	ferredoxin-NADP+ reductase activity
NJR02_08855	COG0686	Belongs to the AlaDH PNT family
NJR02_08865	COG1674	ftsk spoiiie
NJR02_08865	COG0531	amino acid
NJR02_08870	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
NJR02_08875	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
NJR02_08880	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
NJR02_08885	COG1286	toxin biosynthetic process
NJR02_08890	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
NJR02_08895	COG2723	6-phospho-beta-galactosidase activity
NJR02_08900	COG1263	PTS System
NJR02_08900	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
NJR02_08905	COG1609	Transcriptional regulator
NJR02_08915	COG4172	Belongs to the ABC transporter superfamily
NJR02_08925	COG4171	peptide transport system, permease
NJR02_08940	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
NJR02_08945	COG1842	Phage shock protein A
NJR02_08960	COG3106	COG3106 Predicted ATPase
NJR02_08965	COG3768	UPF0283 membrane protein
NJR02_08975	COG2154	pterin-4-alpha-carbinolamine dehydratase
NJR02_09005	COG1570	exodeoxyribonuclease VII activity
NJR02_09015	COG0366	Alpha amylase catalytic
NJR02_09015	COG1874	Beta-galactosidase
NJR02_09025	COG0516	GMP reductase activity
NJR02_09025	COG0517	IMP dehydrogenase activity
NJR02_09030	COG0518	GMP synthase (glutamine-hydrolyzing) activity
NJR02_09030	COG0519	Catalyzes the synthesis of GMP from XMP
NJR02_09035	COG2801	Transposase and inactivated derivatives
NJR02_09050	COG1846	Transcriptional regulator
NJR02_09070	COG2062	phosphohistidine phosphatase, SixA
NJR02_09080	COG0697	spore germination
NJR02_09095	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
NJR02_09100	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
NJR02_09110	COG4591	ABC-type transport system involved in lipoprotein release permease component
NJR02_09115	COG1136	(ABC) transporter
NJR02_09120	COG4591	ABC-type transport system involved in lipoprotein release permease component
NJR02_09125	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
NJR02_09135	COG0544	peptidyl-prolyl cis-trans isomerase activity
NJR02_09140	COG0740	serine-type endopeptidase activity
NJR02_09145	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
NJR02_09150	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
NJR02_09155	COG0776	regulation of translation
NJR02_09160	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
NJR02_09165	COG0488	(ABC) transporter
NJR02_09170	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
NJR02_09175	COG3162	membrane
NJR02_09190	COG1024	Enoyl-CoA hydratase
NJR02_09195	COG1115	amino acid carrier protein
NJR02_09205	COG3228	Belongs to the MtfA family
NJR02_09210	COG1584	GPR1 FUN34 yaaH family protein
NJR02_09235	COG1024	Enoyl-CoA hydratase
NJR02_09240	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
NJR02_09245	COG1960	acyl-CoA dehydrogenase activity
NJR02_09255	COG1960	acyl-CoA dehydrogenase activity
NJR02_09260	COG1024	Enoyl-CoA hydratase
NJR02_09265	COG1024	Enoyl-CoA hydratase
NJR02_09275	COG1028	Short-chain dehydrogenase reductase Sdr
NJR02_09285	COG0730	response to heat
NJR02_09305	COG3267	Type II secretory pathway component ExeA
NJR02_09305	COG3409	Peptidoglycan-binding domain 1 protein
NJR02_09355	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
NJR02_09395	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
NJR02_09415	COG1172	Belongs to the binding-protein-dependent transport system permease family
NJR02_09420	COG1172	Belongs to the binding-protein-dependent transport system permease family
NJR02_09425	COG1129	ABC transporter
NJR02_09430	COG1879	ABC-type sugar transport system periplasmic component
NJR02_09435	COG3039	Transposase
NJR02_09440	COG0583	DNA-binding transcription factor activity
NJR02_09455	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
NJR02_09460	COG0243	molybdopterin cofactor binding
NJR02_09470	COG0583	DNA-binding transcription factor activity
NJR02_09475	COG2723	6-phospho-beta-galactosidase activity
NJR02_09485	COG0583	DNA-binding transcription factor activity
NJR02_09500	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
NJR02_09505	COG0673	inositol 2-dehydrogenase activity
NJR02_09510	COG0583	DNA-binding transcription factor activity
NJR02_09520	COG1560	Kdo2-lipid A biosynthetic process
NJR02_09525	COG1560	Kdo2-lipid A biosynthetic process
NJR02_09540	COG0417	DNA replication proofreading
NJR02_09570	COG0534	Mate efflux family protein
NJR02_09580	COG0307	riboflavin synthase, alpha
NJR02_09595	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
NJR02_09600	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
NJR02_09605	COG0697	spore germination
NJR02_09610	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
NJR02_09640	COG0675	Transposase, IS605 OrfB family
NJR02_09645	COG2996	Protein conserved in bacteria
NJR02_09660	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
NJR02_09665	COG3099	Belongs to the UPF0263 family
NJR02_09670	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
NJR02_09675	COG2894	cell division
NJR02_09680	COG0850	regulation of cytokinetic process
NJR02_09685	COG3100	YcgL domain-containing protein
NJR02_09690	COG2951	lytic endotransglycosylase activity
NJR02_09695	COG1760	l-serine dehydratase
NJR02_09700	COG1760	l-serine dehydratase
NJR02_09705	COG3123	guanosine phosphorylase activity
NJR02_09710	COG1301	dicarboxylic acid transport
NJR02_09725	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
NJR02_09730	COG2067	long-chain fatty acid transport protein
NJR02_09735	COG2067	long-chain fatty acid transport protein
NJR02_09745	COG1595	DNA-templated transcription, initiation
NJR02_09775	COG0714	Associated with various cellular activities
NJR02_09780	COG0183	Belongs to the thiolase family
NJR02_09785	COG1250	3-hydroxyacyl-CoA dehydrogenase
NJR02_09785	COG1024	Enoyl-CoA hydratase
NJR02_09795	COG4681	YaeQ
NJR02_09815	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
NJR02_09830	COG3134	Outer membrane lipoprotein
NJR02_09835	COG0318	PFAM AMP-dependent synthetase and ligase
NJR02_09845	COG0140	phosphoribosyl-ATP diphosphatase activity
NJR02_09845	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
NJR02_09850	COG0107	imidazoleglycerol-phosphate synthase activity
NJR02_09855	COG2205	protein histidine kinase activity
NJR02_09855	COG2198	Histidine kinase
NJR02_09855	COG0784	Response regulator, receiver
NJR02_09860	COG2199	diguanylate cyclase activity
NJR02_09865	COG3437	response regulator, receiver
NJR02_09870	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
NJR02_09875	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
NJR02_09880	COG0131	Imidazoleglycerol-phosphate dehydratase
NJR02_09880	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
NJR02_09885	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
NJR02_09890	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
NJR02_09895	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
NJR02_09905	COG1199	ATP-dependent helicase activity
NJR02_09910	COG1214	PFAM Peptidase M22, glycoprotease
NJR02_09920	COG0596	Alpha beta hydrolase
NJR02_09925	COG0318	PFAM AMP-dependent synthetase and ligase
NJR02_09940	COG0697	spore germination
NJR02_09950	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
NJR02_09955	COG2832	Protein of unknown function (DUF454)
NJR02_09960	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
NJR02_09970	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
NJR02_09975	COG0583	DNA-binding transcription factor activity
NJR02_09985	COG3314	Sporulation integral membrane protein YlbJ
NJR02_09990	COG2197	response regulator
NJR02_09995	COG0617	tRNA 3'-terminal CCA addition
NJR02_09995	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
NJR02_09995	COG0517	IMP dehydrogenase activity
NJR02_10000	COG1643	Atp-dependent helicase
NJR02_10010	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
NJR02_10025	COG4999	Histidine kinase
NJR02_10025	COG2205	protein histidine kinase activity
NJR02_10025	COG3437	response regulator, receiver
NJR02_10025	COG3850	Histidine kinase
NJR02_10035	COG3437	response regulator, receiver
NJR02_10040	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
NJR02_10045	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
NJR02_10050	COG0709	Synthesizes selenophosphate from selenide and ATP
NJR02_10070	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
NJR02_10075	COG0840	transmembrane signaling receptor activity
NJR02_10080	COG1254	Belongs to the acylphosphatase family
NJR02_10095	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
NJR02_10095	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
NJR02_10100	COG0489	protein tyrosine kinase activity
NJR02_10105	COG0572	uridine kinase
NJR02_10110	COG0717	Belongs to the dCTP deaminase family
NJR02_10115	COG0306	phosphate transporter
NJR02_10120	COG1530	ribonuclease E activity
NJR02_10140	COG1399	metal-binding, possibly nucleic acid-binding protein
NJR02_10145	COG0333	Belongs to the bacterial ribosomal protein bL32 family
NJR02_10150	COG0416	fatty acid biosynthetic process
NJR02_10155	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
NJR02_10165	COG1028	Short-chain dehydrogenase reductase Sdr
NJR02_10170	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
NJR02_10175	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
NJR02_10180	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
NJR02_10185	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
NJR02_10190	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
NJR02_10195	COG0470	DNA polymerase III
NJR02_10200	COG0084	hydrolase, TatD family'
NJR02_10215	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
NJR02_10215	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
NJR02_10220	COG3008	intermembrane lipid transfer
NJR02_10225	COG2995	paraquat-inducible protein a
NJR02_10235	COG3141	response to X-ray
NJR02_10245	COG1067	ATP-dependent peptidase activity
NJR02_10250	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
NJR02_10265	COG0488	(ABC) transporter
NJR02_10275	COG0116	Belongs to the methyltransferase superfamily
NJR02_10275	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
NJR02_10285	COG0167	dihydroorotate dehydrogenase activity
NJR02_10290	COG2902	Dehydrogenase
NJR02_10300	COG0308	aminopeptidase N
NJR02_10310	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
NJR02_10315	COG1956	GAF domain-containing protein
NJR02_10330	COG3278	Belongs to the heme-copper respiratory oxidase family
NJR02_10345	COG2010	Cytochrome c
NJR02_10355	COG2217	Heavy metal translocating P-type atpase
NJR02_10370	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
NJR02_10375	COG0589	response to stress
NJR02_10380	COG0037	tRNA processing
NJR02_10395	COG0625	glutathione transferase activity
NJR02_10400	COG1869	D-ribose catabolic process
NJR02_10405	COG1129	ABC transporter
NJR02_10410	COG1172	Belongs to the binding-protein-dependent transport system permease family
NJR02_10415	COG1879	ABC-type sugar transport system periplasmic component
NJR02_10420	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
NJR02_10425	COG1609	Transcriptional regulator
NJR02_10440	COG5001	Diguanylate cyclase
NJR02_10440	COG3300	MHYT domain
NJR02_10475	COG0776	regulation of translation
NJR02_10480	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
NJR02_10480	COG0072	phenylalanine-tRNA ligase activity
NJR02_10485	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
NJR02_10490	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
NJR02_10495	COG0291	Belongs to the bacterial ribosomal protein bL35 family
NJR02_10500	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
NJR02_10505	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
NJR02_10545	COG0675	Transposase, IS605 OrfB family
NJR02_10570	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
NJR02_10580	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
NJR02_10585	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
NJR02_10590	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
NJR02_10595	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
NJR02_10600	COG3313	Fe-S protein
NJR02_10605	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
NJR02_10605	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
NJR02_10605	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
NJR02_10610	COG1105	Belongs to the carbohydrate kinase PfkB family
NJR02_10615	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
NJR02_10615	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
NJR02_10620	COG1609	Transcriptional regulator
NJR02_10625	COG0814	amino acid
NJR02_10635	COG5654	RES domain protein
NJR02_10640	COG0513	Belongs to the DEAD box helicase family
NJR02_10650	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
NJR02_10655	COG2890	protein-(glutamine-N5) methyltransferase activity
NJR02_10660	COG2840	Smr protein MutS2
NJR02_10700	COG2824	Alkylphosphonate utilization operon protein PhnA
NJR02_10750	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
NJR02_10755	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
NJR02_10760	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
NJR02_10770	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
NJR02_10775	COG1434	Gram-negative-bacterium-type cell wall biogenesis
NJR02_10785	COG0205	6-phosphofructokinase activity
NJR02_10795	COG1473	amidohydrolase
NJR02_10800	COG1011	Hydrolase
NJR02_10805	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
NJR02_10850	COG3593	DNA synthesis involved in DNA repair
NJR02_10865	COG0583	DNA-binding transcription factor activity
NJR02_10870	COG0730	response to heat
NJR02_10880	COG3148	PFAM DTW domain containing protein
NJR02_10885	COG1181	Belongs to the D-alanine--D-alanine ligase family
NJR02_10895	COG0386	Belongs to the glutathione peroxidase family
NJR02_10900	COG0513	Belongs to the DEAD box helicase family
NJR02_10935	COG3300	MHYT domain
NJR02_10935	COG5001	Diguanylate cyclase
NJR02_11015	COG0789	Transcriptional regulator
NJR02_11040	COG0789	Transcriptional regulator
NJR02_11065	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NJR02_11070	COG1538	Outer membrane efflux protein
NJR02_11140	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
NJR02_11190	COG2948	multi-organism process
NJR02_11205	COG2329	Antibiotic biosynthesis monooxygenase
NJR02_11210	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
NJR02_11240	COG2501	S4 domain
NJR02_11265	COG1132	(ABC) transporter
NJR02_11270	COG1132	(ABC) transporter
NJR02_11280	COG3118	belongs to the thioredoxin family
NJR02_11285	COG0471	metal ion transport
NJR02_11295	COG0058	SHG alpha-glucan phosphorylase activity
NJR02_11395	COG0814	amino acid
NJR02_11400	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
NJR02_11405	COG0514	ATP-dependent DNA helicase (RecQ)
NJR02_11410	COG2766	serine protein kinase
NJR02_11415	COG2718	Belongs to the UPF0229 family
NJR02_11420	COG2719	SpoVR family
NJR02_11425	COG2186	Transcriptional regulator
NJR02_11430	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
NJR02_11435	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
NJR02_11440	COG0586	Pfam SNARE associated Golgi protein
NJR02_11450	COG0556	nucleotide-excision repair
NJR02_11460	COG2985	domain, Protein
NJR02_11460	COG0569	domain protein
NJR02_11465	COG0739	heme binding
NJR02_11465	COG1196	nuclear chromosome segregation
NJR02_11465	COG0741	lytic transglycosylase activity
NJR02_11470	COG3181	Tripartite tricarboxylate transporter family receptor
NJR02_11485	COG4565	transcriptional regulatory protein
NJR02_11490	COG3290	protein histidine kinase activity
NJR02_11495	COG1846	Transcriptional regulator
NJR02_11495	COG1940	carbohydrate kinase activity
NJR02_11500	COG0840	transmembrane signaling receptor activity
NJR02_11505	COG3012	SEC-C Motif Domain Protein
NJR02_11510	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
NJR02_11515	COG3075	Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor
NJR02_11520	COG0247	lactate metabolic process
NJR02_11535	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
NJR02_11540	COG0437	4 iron, 4 sulfur cluster binding
NJR02_11545	COG3301	Polysulphide reductase, NrfD
NJR02_11550	COG1138	Cytochrome C-type biogenesis protein
NJR02_11560	COG3088	subunit of a heme lyase
NJR02_11560	COG4235	cytochrome complex assembly
NJR02_11565	COG3039	Transposase
NJR02_11570	COG3039	Transposase
NJR02_11585	COG3046	protein related to deoxyribodipyrimidine photolyase
NJR02_11590	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
NJR02_11595	COG0517	IMP dehydrogenase activity
NJR02_11595	COG0617	tRNA 3'-terminal CCA addition
NJR02_11595	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
NJR02_11605	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
NJR02_11610	COG0583	DNA-binding transcription factor activity
NJR02_11620	COG4774	siderophore transport
NJR02_11625	COG2771	luxR family
NJR02_11625	COG2200	EAL domain
NJR02_11630	COG4977	sequence-specific DNA binding
NJR02_11630	COG1917	Cupin 2, conserved barrel domain protein
NJR02_11640	COG2910	NAD(P)H-binding
NJR02_11650	COG0626	cystathionine gamma-synthase activity
NJR02_11655	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
NJR02_11745	COG0210	DNA helicase
NJR02_11750	COG1111	helicase
NJR02_11750	COG1205	dead DEAH box helicase
NJR02_11760	COG3039	Transposase
NJR02_11775	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
NJR02_11850	COG2197	response regulator
NJR02_11865	COG3039	Transposase
NJR02_11940	COG3550	peptidyl-serine autophosphorylation
NJR02_11950	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
NJR02_11955	COG1349	DNA-binding transcription factor activity
NJR02_11975	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
NJR02_11980	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
NJR02_12015	COG1435	thymidine kinase activity
NJR02_12020	COG1757	Na H antiporter
NJR02_12025	COG2916	Histone family protein nucleoid-structuring protein H-NS
NJR02_12030	COG2096	Adenosyltransferase
NJR02_12035	COG3530	Putative quorum-sensing-regulated virulence factor
NJR02_12040	COG0602	queuosine metabolic process
NJR02_12045	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
NJR02_12065	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
NJR02_12075	COG0776	regulation of translation
NJR02_12080	COG0539	negative regulation of cytoplasmic translation
NJR02_12085	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
NJR02_12090	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
NJR02_12120	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
NJR02_12125	COG3300	MHYT domain
NJR02_12125	COG5001	Diguanylate cyclase
NJR02_12135	COG0583	DNA-binding transcription factor activity
NJR02_12140	COG0745	RESPONSE REGULATOR receiver
NJR02_12165	COG4989	oxidoreductase activity
NJR02_12170	COG0724	RNA recognition motif
NJR02_12180	COG3770	Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus
NJR02_12190	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
NJR02_12210	COG4974	Belongs to the 'phage' integrase family
NJR02_12235	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
NJR02_12240	COG1360	Flagellar Motor Protein
NJR02_12245	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
NJR02_12250	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
NJR02_12255	COG0649	NAD binding
NJR02_12255	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
NJR02_12270	COG1034	ATP synthesis coupled electron transport
NJR02_12275	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
NJR02_12280	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
NJR02_12285	COG0839	Belongs to the complex I subunit 6 family
NJR02_12290	COG0713	ATP synthesis coupled electron transport
NJR02_12300	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
NJR02_12305	COG1007	ATP synthesis coupled electron transport
NJR02_12310	COG0047	phosphoribosylformylglycinamidine synthase activity
NJR02_12310	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
NJR02_12315	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
NJR02_12320	COG1645	bacterial-type flagellum-dependent swarming motility
NJR02_12325	COG1160	GTP binding
NJR02_12330	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
NJR02_12335	COG2976	Protein conserved in bacteria
NJR02_12340	COG0124	histidyl-tRNA synthetase
NJR02_12350	COG1426	Protein conserved in bacteria
NJR02_12360	COG0820	rRNA (adenine-C2-)-methyltransferase activity
NJR02_12365	COG0105	UTP biosynthetic process
NJR02_12370	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
NJR02_12380	COG0633	Ferredoxin
NJR02_12385	COG0443	Heat shock 70 kDa protein
NJR02_12390	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
NJR02_12400	COG0822	iron-sulfur transferase activity
NJR02_12405	COG1104	cysteine desulfurase activity
NJR02_12420	COG3154	lipid carrier protein
NJR02_12425	COG0826	peptidase U32
NJR02_12430	COG0826	peptidase U32
NJR02_12440	COG2897	thiosulfate sulfurtransferase activity
NJR02_12445	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
NJR02_12450	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
NJR02_12455	COG1862	Preprotein translocase
NJR02_12460	COG0343	queuine tRNA-ribosyltransferase activity
NJR02_12465	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
NJR02_12470	COG0517	IMP dehydrogenase activity
NJR02_12475	COG0450	alkyl hydroperoxide reductase
NJR02_12480	COG3634	alkyl hydroperoxide reductase activity
NJR02_12505	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
NJR02_12505	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
NJR02_12510	COG0509	glycine decarboxylation via glycine cleavage system
NJR02_12515	COG0404	The glycine cleavage system catalyzes the degradation of glycine
NJR02_12520	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
NJR02_12525	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
NJR02_12545	COG2814	Major facilitator Superfamily
NJR02_12550	COG0444	Belongs to the ABC transporter superfamily
NJR02_12555	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
NJR02_12560	COG0601	transmembrane transport
NJR02_12570	COG0625	glutathione transferase activity
NJR02_12575	COG0625	glutathione transferase activity
NJR02_12585	COG0483	inositol monophosphate 1-phosphatase activity
NJR02_12600	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
NJR02_12605	COG2056	Na+-H+ antiporter family
NJR02_12610	COG2814	Major facilitator Superfamily
NJR02_12615	COG0583	DNA-binding transcription factor activity
NJR02_12620	COG5001	Diguanylate cyclase
NJR02_12630	COG0513	Belongs to the DEAD box helicase family
NJR02_12635	COG2050	protein possibly involved in aromatic compounds catabolism
NJR02_12645	COG0247	lactate metabolic process
NJR02_12645	COG0277	FAD linked oxidase domain protein
NJR02_12655	COG1253	flavin adenine dinucleotide binding
NJR02_12660	COG1902	pentaerythritol trinitrate reductase activity
NJR02_12670	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
NJR02_12675	COG0647	UMP catabolic process
NJR02_12685	COG0367	asparagine synthase
NJR02_12700	COG0625	glutathione transferase activity
NJR02_12710	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
NJR02_12725	COG0564	pseudouridine synthase activity
NJR02_12730	COG5001	Diguanylate cyclase
NJR02_12735	COG0840	transmembrane signaling receptor activity
NJR02_12740	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
NJR02_12775	COG0670	Belongs to the BI1 family
NJR02_12780	COG1289	transmembrane transporter activity
NJR02_12785	COG2920	part of a sulfur-relay system
NJR02_12790	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
NJR02_12795	COG0285	dihydrofolate synthase activity
NJR02_12800	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
NJR02_12805	COG0101	tRNA pseudouridine synthase activity
NJR02_12815	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
NJR02_12820	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
NJR02_12830	COG1464	Belongs to the NlpA lipoprotein family
NJR02_12850	COG1119	ATPase activity
NJR02_12855	COG0574	Belongs to the PEP-utilizing enzyme family
NJR02_12855	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
NJR02_12860	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
NJR02_12870	COG1113	amino acid transport
NJR02_12915	COG1242	4 iron, 4 sulfur cluster binding
NJR02_12920	COG0070	glutamate synthase
NJR02_12920	COG0069	glutamate synthase activity
NJR02_12920	COG0067	glutamate synthase
NJR02_12925	COG0493	'glutamate synthase
NJR02_12930	COG1126	abc transporter atp-binding protein
NJR02_12935	COG0765	amino acid transport
NJR02_12940	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NJR02_12965	COG4104	PAAR repeat-containing protein
NJR02_12975	COG0513	Belongs to the DEAD box helicase family
NJR02_13015	COG3706	GGDEF domain
NJR02_13020	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
NJR02_13025	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
NJR02_13030	COG0505	Belongs to the CarA family
NJR02_13035	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
NJR02_13045	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
NJR02_13050	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
NJR02_13055	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
NJR02_13060	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
NJR02_13065	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
NJR02_13070	COG4138	Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system
NJR02_13100	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
NJR02_13110	COG0023	Translation Initiation Factor
NJR02_13115	COG2119	membrane
NJR02_13150	COG2199	diguanylate cyclase activity
NJR02_13150	COG2203	Gaf domain
NJR02_13155	COG3039	Transposase
NJR02_13165	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
NJR02_13175	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
NJR02_13180	COG2261	transglycosylase associated protein
NJR02_13185	COG1309	transcriptional regulator
NJR02_13190	COG0604	alcohol dehydrogenase
NJR02_13200	COG2801	Transposase and inactivated derivatives
NJR02_13220	COG3039	Transposase
NJR02_13280	COG0322	excinuclease ABC activity
NJR02_13285	COG2197	response regulator
NJR02_13290	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
NJR02_13295	COG2835	tetraacyldisaccharide 4'-kinase activity
NJR02_13300	COG1663	tetraacyldisaccharide 4'-kinase activity
NJR02_13305	COG1132	(ABC) transporter
NJR02_13310	COG0658	competence protein
NJR02_13310	COG2333	competence protein COMEC
NJR02_13325	COG0433	COG0433 Predicted ATPase
NJR02_13330	COG1448	Aminotransferase
NJR02_13345	COG1199	ATP-dependent helicase activity
NJR02_13355	COG0123	including yeast histone deacetylase and acetoin utilization protein
NJR02_13360	COG0477	Major facilitator Superfamily
NJR02_13365	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
NJR02_13370	COG1785	Belongs to the alkaline phosphatase family
NJR02_13390	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
NJR02_13395	COG3706	GGDEF domain
NJR02_13400	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NJR02_13405	COG0765	amino acid transport
NJR02_13410	COG1126	abc transporter atp-binding protein
NJR02_13420	COG0531	amino acid
NJR02_13435	COG1253	flavin adenine dinucleotide binding
NJR02_13440	COG0704	Plays a role in the regulation of phosphate uptake
NJR02_13445	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
NJR02_13450	COG0581	inorganic phosphate transmembrane transporter activity
NJR02_13455	COG0573	inorganic phosphate transmembrane transporter activity
NJR02_13460	COG0590	tRNA wobble adenosine to inosine editing
NJR02_13475	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
NJR02_13495	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
NJR02_13500	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
NJR02_13505	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
NJR02_13510	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
NJR02_13535	COG2716	regulation of RNA biosynthetic process
NJR02_13540	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
NJR02_13550	COG2239	Acts as a magnesium transporter
NJR02_13565	COG1705	Flagellar rod assembly protein muramidase FlgJ
NJR02_13565	COG3951	Flagellar rod assembly protein muramidase FlgJ
NJR02_13570	COG1706	bacterial-type flagellum-dependent cell motility
NJR02_13575	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
NJR02_13590	COG1749	Flagellar hook protein flgE
NJR02_13605	COG1815	bacterial-type flagellum-dependent cell motility
NJR02_13610	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
NJR02_13615	COG0784	Response regulator, receiver
NJR02_13615	COG0835	chemotaxis
NJR02_13620	COG1261	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly
NJR02_13635	COG0622	Phosphoesterase
NJR02_13640	COG4166	transmembrane transport
NJR02_13655	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
NJR02_13665	COG0697	spore germination
NJR02_13670	COG4166	transmembrane transport
NJR02_13695	COG1278	Cold shock
NJR02_13735	COG3132	Protein of unknown function, DUF480
NJR02_13745	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
NJR02_13765	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
NJR02_13770	COG1215	transferase activity, transferring glycosyl groups
NJR02_13810	COG2089	acid synthase
NJR02_13815	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
NJR02_13820	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
NJR02_13850	COG1737	Transcriptional regulator
NJR02_13855	COG0469	pyruvate kinase activity
NJR02_13865	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NJR02_13870	COG1960	acyl-CoA dehydrogenase activity
NJR02_13875	COG1309	transcriptional regulator
NJR02_13880	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
NJR02_13900	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NJR02_13905	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NJR02_13910	COG1309	transcriptional regulator
NJR02_13925	COG1946	Acyl-CoA thioesterase
NJR02_13940	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
NJR02_13950	COG0009	L-threonylcarbamoyladenylate synthase
NJR02_13955	COG0613	PHP domain protein
NJR02_13960	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
NJR02_13965	COG0512	Glutamine amidotransferase of anthranilate synthase
NJR02_13965	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
NJR02_13970	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
NJR02_13975	COG0134	indole-3-glycerol-phosphate synthase activity
NJR02_13975	COG0135	phosphoribosylanthranilate isomerase activity
NJR02_13980	COG0133	tryptophan synthase activity
NJR02_13985	COG0159	tryptophan synthase activity
NJR02_13995	COG3039	Transposase
NJR02_14045	COG4521	taurine ABC transporter
NJR02_14050	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
NJR02_14055	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
NJR02_14060	COG2175	clavaminate synthase activity
NJR02_14065	COG5507	3-demethylubiquinone-9 3-methyltransferase
NJR02_14070	COG2814	Major facilitator Superfamily
NJR02_14075	COG0109	protoheme IX farnesyltransferase activity
NJR02_14080	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
NJR02_14085	COG1845	cytochrome c oxidase, subunit III
NJR02_14090	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
NJR02_14095	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
NJR02_14105	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
NJR02_14110	COG0583	DNA-binding transcription factor activity
NJR02_14130	COG1846	Transcriptional regulator
NJR02_14145	COG3241	Transfers electrons from cytochrome c551 to cytochrome oxidase
NJR02_14160	COG0745	RESPONSE REGULATOR receiver
NJR02_14170	COG0708	Exodeoxyribonuclease III
NJR02_14185	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NJR02_14190	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NJR02_14205	COG0095	Lipoate-protein ligase
NJR02_14235	COG0640	Transcriptional regulator
NJR02_14245	COG0446	pyridine nucleotide-disulphide oxidoreductase
NJR02_14255	COG1285	pathogenesis
NJR02_14285	COG0484	heat shock protein binding
NJR02_14290	COG0443	Heat shock 70 kDa protein
NJR02_14295	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
NJR02_14300	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
NJR02_14305	COG3706	GGDEF domain
NJR02_14310	COG0497	DNA recombination
NJR02_14320	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NJR02_14325	COG1136	(ABC) transporter
NJR02_14325	COG0577	efflux transmembrane transporter activity
NJR02_14330	COG1538	Outer membrane efflux protein
NJR02_14335	COG2375	cellular response to nickel ion
NJR02_14340	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
NJR02_14345	COG2916	Histone family protein nucleoid-structuring protein H-NS
NJR02_14350	COG0583	DNA-binding transcription factor activity
NJR02_14355	COG3048	D-serine ammonia-lyase activity
NJR02_14365	COG0538	isocitrate dehydrogenase activity
NJR02_14400	COG0456	acetyltransferase
NJR02_14405	COG1187	pseudouridine synthase activity
NJR02_14415	COG0482	sulfurtransferase activity
NJR02_14420	COG2915	High frequency lysogenization protein hflD homolog
NJR02_14425	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
NJR02_14430	COG2850	peptidyl-arginine hydroxylation
NJR02_14440	COG3264	Mechanosensitive ion channel
NJR02_14440	COG1196	nuclear chromosome segregation
NJR02_14470	COG0281	malic enzyme
NJR02_14475	COG0746	molybdenum cofactor guanylyltransferase activity
NJR02_14480	COG1763	Mo-molybdopterin cofactor biosynthetic process
NJR02_14485	COG1289	transmembrane transporter activity
NJR02_14490	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
NJR02_14520	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
NJR02_14540	COG4319	ketosteroid isomerase
NJR02_14545	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
NJR02_14550	COG0083	homoserine kinase activity
NJR02_14560	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
NJR02_14565	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
NJR02_14580	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
NJR02_14590	COG0745	RESPONSE REGULATOR receiver
NJR02_14605	COG4988	ABC transporter
NJR02_14610	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
NJR02_14630	COG1720	tRNA m6t6A37 methyltransferase activity
NJR02_14645	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
NJR02_14650	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
NJR02_14655	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
NJR02_14665	COG2190	(PTS) system
NJR02_14670	COG3038	cytochrome b561
NJR02_14680	COG0419	ATPase involved in DNA repair
NJR02_14685	COG0420	3'-5' exonuclease activity
NJR02_14690	COG1247	-acetyltransferase
NJR02_14695	COG2974	May be involved in recombination
NJR02_14705	COG0405	Gamma-glutamyltransferase
NJR02_14710	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
NJR02_14710	COG4651	solute:proton antiporter activity
NJR02_14750	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
NJR02_14755	COG1396	sequence-specific DNA binding
NJR02_14755	COG1917	Cupin 2, conserved barrel domain protein
NJR02_14760	COG1012	belongs to the aldehyde dehydrogenase family
NJR02_14775	COG0531	amino acid
NJR02_14780	COG0531	amino acid
NJR02_14790	COG1283	sodium-dependent phosphate transmembrane transporter activity
NJR02_14800	COG3384	dioxygenase
NJR02_14805	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NJR02_14805	COG2205	protein histidine kinase activity
NJR02_14810	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NJR02_14810	COG2205	protein histidine kinase activity
NJR02_14815	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NJR02_14815	COG0784	Response regulator, receiver
NJR02_14815	COG2205	protein histidine kinase activity
NJR02_14815	COG2198	Histidine kinase
NJR02_14840	COG2205	protein histidine kinase activity
NJR02_14840	COG0784	Response regulator, receiver
NJR02_14845	COG0582	viral genome integration into host DNA
NJR02_14880	COG1160	GTP binding
NJR02_14920	COG3039	Transposase
NJR02_14925	COG3039	Transposase
NJR02_14975	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
NJR02_14980	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
NJR02_14985	COG3039	Transposase
NJR02_15015	COG1376	ErfK ybiS ycfS ynhG family protein
NJR02_15015	COG1388	LysM domain
NJR02_15030	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
NJR02_15035	COG0791	NLP P60 protein
NJR02_15045	COG3118	belongs to the thioredoxin family
NJR02_15055	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
NJR02_15060	COG0788	formyltetrahydrofolate deformylase activity
NJR02_15085	COG0739	heme binding
NJR02_15085	COG1196	nuclear chromosome segregation
NJR02_15085	COG0741	lytic transglycosylase activity
NJR02_15105	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
NJR02_15110	COG0673	inositol 2-dehydrogenase activity
NJR02_15135	COG3039	Transposase
NJR02_15140	COG1032	radical SAM domain protein
NJR02_15145	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NJR02_15155	COG3706	GGDEF domain
NJR02_15160	COG1752	Esterase of the alpha-beta hydrolase superfamily
NJR02_15165	COG0733	neurotransmitter:sodium symporter activity
NJR02_15195	COG0281	malic enzyme
NJR02_15200	COG2207	Transcriptional regulator
NJR02_15220	COG2233	PERMEase
NJR02_15225	COG0095	Lipoate-protein ligase
NJR02_15230	COG1115	amino acid carrier protein
NJR02_15235	COG0019	diaminopimelate decarboxylase activity
NJR02_15245	COG0678	peroxiredoxin activity
NJR02_15250	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
NJR02_15260	COG1126	abc transporter atp-binding protein
NJR02_15265	COG0765	amino acid transport
NJR02_15270	COG4597	amino acid ABC transporter
NJR02_15275	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NJR02_15295	COG0545	Peptidyl-prolyl cis-trans isomerase
NJR02_15300	COG3142	Participates in the control of copper homeostasis
NJR02_15315	COG4783	chaperone-mediated protein folding
NJR02_15325	COG5002	protein histidine kinase activity
NJR02_15330	COG0745	RESPONSE REGULATOR receiver
NJR02_15335	COG0346	lactoylglutathione lyase activity
NJR02_15340	COG3706	GGDEF domain
NJR02_15350	COG3284	Transcriptional regulator
NJR02_15365	COG0697	spore germination
NJR02_15370	COG0667	Aldo Keto reductase
NJR02_15385	COG3290	protein histidine kinase activity
NJR02_15395	COG1566	PFAM secretion protein HlyD family protein
NJR02_15420	COG0602	queuosine metabolic process
NJR02_15425	COG1328	CTP reductase activity
NJR02_15435	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
NJR02_15440	COG3115	cell septum assembly
NJR02_15445	COG1196	nuclear chromosome segregation
NJR02_15455	COG2860	membrane
NJR02_15465	COG3108	Peptidase M15
NJR02_15470	COG2989	Protein conserved in bacteria
NJR02_15485	COG0463	Glycosyl transferase, family 2
NJR02_15500	COG0366	Alpha amylase catalytic
NJR02_15535	COG3706	GGDEF domain
NJR02_15540	COG0037	tRNA processing
NJR02_15545	COG3590	peptidase
NJR02_15555	COG0488	(ABC) transporter
NJR02_15565	COG0531	amino acid
NJR02_15570	COG0814	amino acid
NJR02_15585	COG0825	malonyl-CoA metabolic process
NJR02_15595	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
NJR02_15600	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
NJR02_15605	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
NJR02_15610	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
NJR02_15615	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
NJR02_15630	COG0750	zinc metalloprotease
NJR02_15635	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
NJR02_15640	COG0575	Belongs to the CDS family
NJR02_15645	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
NJR02_15650	COG0233	cytoplasmic translational termination
NJR02_15655	COG0528	UMP kinase activity
NJR02_15660	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
NJR02_15665	COG0052	Belongs to the universal ribosomal protein uS2 family
NJR02_15670	COG0024	Methionine aminopeptidase
NJR02_15675	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
NJR02_15680	COG2171	N-acyltransferase activity
NJR02_15690	COG1263	PTS System
NJR02_15690	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
NJR02_15710	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
NJR02_15715	COG0564	pseudouridine synthase activity
NJR02_15720	COG3098	single-species biofilm formation
NJR02_15745	COG5595	Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
NJR02_15755	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
NJR02_15755	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
NJR02_15770	COG1611	Belongs to the LOG family
NJR02_15775	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
NJR02_15780	COG0473	3-isopropylmalate dehydrogenase activity
NJR02_15790	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
NJR02_15805	COG0583	DNA-binding transcription factor activity
NJR02_15810	COG0840	transmembrane signaling receptor activity
NJR02_15815	COG2801	Transposase and inactivated derivatives
NJR02_15820	COG3039	Transposase
NJR02_15825	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
NJR02_15840	COG1477	protein flavinylation
NJR02_15845	COG2871	sodium ion transport
NJR02_15850	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
NJR02_15855	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
NJR02_15860	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
NJR02_15865	COG1805	sodium ion transport
NJR02_15870	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
NJR02_15875	COG0271	Belongs to the BolA IbaG family
NJR02_15880	COG2813	Specifically methylates the guanine in position
NJR02_15890	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
NJR02_15900	COG2211	Major facilitator Superfamily
NJR02_15910	COG1666	GTP binding
NJR02_15915	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
NJR02_15925	COG3039	Transposase
NJR02_15930	COG3039	Transposase
NJR02_15940	COG1447	Phosphotransferase system cellobiose-specific component IIA
NJR02_15960	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
NJR02_15970	COG1151	hydroxylamine reductase activity
NJR02_15975	COG0783	Belongs to the Dps family
NJR02_16000	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
NJR02_16015	COG0300	oxidoreductase activity
NJR02_16025	COG0415	Belongs to the DNA photolyase family
NJR02_16030	COG0789	Transcriptional regulator
NJR02_16035	COG3272	Protein of unknown function (DUF1722)
NJR02_16060	COG0077	Prephenate dehydratase
NJR02_16060	COG1605	Chorismate mutase
NJR02_16090	COG2133	pyrroloquinoline quinone binding
NJR02_16100	COG1349	DNA-binding transcription factor activity
NJR02_16105	COG2084	Dehydrogenase
NJR02_16115	COG0235	Class ii aldolase
NJR02_16120	COG3622	Belongs to the hyi family
NJR02_16125	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
NJR02_16130	COG2610	gluconate transmembrane transporter activity
NJR02_16150	COG0300	oxidoreductase activity
NJR02_16175	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
NJR02_16195	COG3813	Protein conserved in bacteria
NJR02_16205	COG0826	peptidase U32
NJR02_16210	COG1280	lysine exporter protein (LysE YggA)
NJR02_16220	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
NJR02_16295	COG1566	PFAM secretion protein HlyD family protein
NJR02_16305	COG0114	fumarate hydratase activity
NJR02_16315	COG0506	proline dehydrogenase activity
NJR02_16315	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
NJR02_16315	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
NJR02_16320	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
NJR02_16335	COG0737	Belongs to the 5'-nucleotidase family
NJR02_16355	COG2204	response regulator
NJR02_16360	COG0545	Peptidyl-prolyl cis-trans isomerase
NJR02_16370	COG2900	Belongs to the SlyX family
NJR02_16375	COG1047	Peptidyl-prolyl cis-trans
NJR02_16380	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
NJR02_16390	COG0835	chemotaxis
NJR02_16390	COG0784	Response regulator, receiver
NJR02_16395	COG0429	hydrolase of the alpha beta-hydrolase fold
NJR02_16400	COG3706	GGDEF domain
NJR02_16400	COG5001	Diguanylate cyclase
NJR02_16400	COG2203	Gaf domain
NJR02_16400	COG4251	negative regulation of phosphorylation
NJR02_16405	COG3089	Belongs to the UPF0270 family
NJR02_16410	COG3954	Phosphoribulokinase
NJR02_16425	COG1765	OsmC-like protein
NJR02_16435	COG2226	methyltransferase
NJR02_16445	COG2205	protein histidine kinase activity
NJR02_16445	COG2202	Pas domain
NJR02_16450	COG2814	Major facilitator Superfamily
NJR02_16475	COG0748	coenzyme F420 binding
NJR02_16480	COG3721	Heme iron utilization protein
NJR02_16490	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
NJR02_16515	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
NJR02_16525	COG0463	Glycosyl transferase, family 2
NJR02_16530	COG0741	lytic transglycosylase activity
NJR02_16535	COG0488	(ABC) transporter
NJR02_16545	COG2252	PERMEase
NJR02_16550	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
NJR02_16555	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
NJR02_16560	COG3178	'Phosphotransferase
NJR02_16565	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
NJR02_16575	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
NJR02_16580	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
NJR02_16585	COG2967	ApaG domain
NJR02_16590	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
NJR02_16600	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
NJR02_16605	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
NJR02_16610	COG3314	Sporulation integral membrane protein YlbJ
NJR02_16615	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
NJR02_16620	COG0211	Belongs to the bacterial ribosomal protein bL27 family
NJR02_16625	COG0261	This protein binds to 23S rRNA in the presence of protein L20
NJR02_16630	COG0142	geranyltranstransferase activity
NJR02_16635	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
NJR02_16640	COG0330	HflC and HflK could
NJR02_16645	COG0330	HflC and HflK could
NJR02_16650	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
NJR02_16655	COG1923	regulation of RNA biosynthetic process
NJR02_16660	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
NJR02_16665	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
NJR02_16675	COG0802	atpase or kinase
NJR02_16680	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
NJR02_16680	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
NJR02_16700	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
NJR02_16705	COG2011	ABC-type metal ion transport system permease component
NJR02_16710	COG1464	Belongs to the NlpA lipoprotein family
NJR02_16735	COG0784	Response regulator, receiver
NJR02_16735	COG2205	protein histidine kinase activity
NJR02_16745	COG0232	Belongs to the dGTPase family. Type 2 subfamily
NJR02_16750	COG0784	Response regulator, receiver
NJR02_16750	COG2198	Histidine kinase
NJR02_16750	COG5002	protein histidine kinase activity
NJR02_16770	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
NJR02_16785	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
NJR02_16790	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
NJR02_16795	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
NJR02_16800	COG2716	regulation of RNA biosynthetic process
NJR02_16805	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
NJR02_16810	COG3013	Belongs to the UPF0304 family
NJR02_16820	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
NJR02_16825	COG0280	phosphate acetyltransferase
NJR02_16825	COG0857	belongs to the CobB CobQ family
NJR02_16830	COG0440	acetolactate synthase activity
NJR02_16835	COG0028	Belongs to the TPP enzyme family
NJR02_16850	COG0671	phosphoesterase, PA-phosphatase related
NJR02_16860	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
NJR02_16865	COG0473	3-isopropylmalate dehydrogenase activity
NJR02_16870	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
NJR02_16875	COG0066	3-isopropylmalate dehydratase activity
NJR02_16890	COG4143	(ABC) transporter
NJR02_16895	COG1178	ABC-type Fe3 transport system permease component
NJR02_16900	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
NJR02_16905	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
NJR02_16915	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
NJR02_16970	COG2205	protein histidine kinase activity
NJR02_16975	COG0745	RESPONSE REGULATOR receiver
NJR02_16980	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NJR02_16985	COG0577	efflux transmembrane transporter activity
NJR02_16985	COG1136	(ABC) transporter
NJR02_16995	COG1912	Pfam S-adenosyl-l-methionine hydroxide adenosyltransferase
NJR02_17030	COG2199	diguanylate cyclase activity
NJR02_17030	COG2203	Gaf domain
NJR02_17035	COG0513	Belongs to the DEAD box helicase family
NJR02_17045	COG1917	Cupin 2, conserved barrel domain protein
NJR02_17045	COG2207	Transcriptional regulator
NJR02_17080	COG2801	Transposase and inactivated derivatives
NJR02_17085	COG0154	amidase activity
NJR02_17090	COG2957	Belongs to the agmatine deiminase family
NJR02_17100	COG2852	Protein conserved in bacteria
NJR02_17110	COG1902	pentaerythritol trinitrate reductase activity
NJR02_17115	COG0456	acetyltransferase
NJR02_17145	COG5001	Diguanylate cyclase
NJR02_17145	COG5002	protein histidine kinase activity
NJR02_17150	COG2425	protein containing a von Willebrand factor type A (vWA) domain
NJR02_17165	COG0456	acetyltransferase
NJR02_17175	COG1022	Amp-dependent synthetase and ligase
NJR02_17185	COG1794	racemase activity, acting on amino acids and derivatives
NJR02_17200	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
NJR02_17215	COG0733	neurotransmitter:sodium symporter activity
NJR02_17220	COG0733	neurotransmitter:sodium symporter activity
NJR02_17235	COG0561	phosphatase activity
NJR02_17265	COG1846	Transcriptional regulator
NJR02_17270	COG2130	NADP-dependent
NJR02_17305	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
NJR02_17310	COG1640	4-alpha-glucanotransferase
NJR02_17315	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
NJR02_17325	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
NJR02_17330	COG0840	transmembrane signaling receptor activity
NJR02_17405	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
NJR02_17410	COG2885	chlorophyll binding
NJR02_17415	COG0823	Involved in the tonB-independent uptake of proteins
NJR02_17430	COG0811	peptide transport
NJR02_17435	COG0824	Thioesterase
NJR02_17440	COG3790	cyd operon protein YbgE
NJR02_17445	COG4890	Cyd operon protein YbgT
NJR02_17450	COG1294	oxidase, subunit
NJR02_17455	COG1271	oxidase subunit
NJR02_17465	COG2255	four-way junction helicase activity
NJR02_17470	COG0632	four-way junction helicase activity
NJR02_17480	COG0442	prolyl-tRNA aminoacylation
NJR02_17485	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
NJR02_17490	COG4221	oxidoreductase activity
NJR02_17505	COG1024	Enoyl-CoA hydratase
NJR02_17520	COG4166	transmembrane transport
NJR02_17535	COG0513	Belongs to the DEAD box helicase family
NJR02_17570	COG0457	Tetratricopeptide repeat
NJR02_17570	COG3118	belongs to the thioredoxin family
NJR02_17575	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
NJR02_17580	COG1215	transferase activity, transferring glycosyl groups
NJR02_17600	COG2194	sulfuric ester hydrolase activity
NJR02_17605	COG1448	Aminotransferase
NJR02_17620	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
NJR02_17625	COG1328	CTP reductase activity
NJR02_17650	COG0840	transmembrane signaling receptor activity
NJR02_17655	COG3397	chitin binding
NJR02_17660	COG0583	DNA-binding transcription factor activity
NJR02_17665	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
NJR02_17670	COG4208	sulfate ABC transporter
NJR02_17675	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
NJR02_17685	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
NJR02_17715	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
NJR02_17720	COG0564	pseudouridine synthase activity
NJR02_17740	COG0459	protein refolding
NJR02_17745	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
NJR02_17750	COG0534	Mate efflux family protein
NJR02_17755	COG3030	protein affecting phage T7 exclusion by the F plasmid
NJR02_17760	COG1027	Aspartate ammonia-lyase
NJR02_17765	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
NJR02_17770	COG2918	glutathione biosynthetic process
NJR02_17775	COG0612	Peptidase, M16
NJR02_17780	COG1238	metal cluster binding
NJR02_17820	COG0359	binds to the 23S rRNA
NJR02_17825	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
NJR02_17830	COG0360	Binds together with S18 to 16S ribosomal RNA
NJR02_17835	COG1914	H( )-stimulated, divalent metal cation uptake system
NJR02_17845	COG2153	protein acetylation
NJR02_17855	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
NJR02_17860	COG0557	exoribonuclease II activity
NJR02_17865	COG3706	GGDEF domain
NJR02_17870	COG1854	S-ribosylhomocysteine lyase activity
NJR02_17885	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
NJR02_17885	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
NJR02_17925	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
NJR02_17930	COG1047	Peptidyl-prolyl cis-trans
NJR02_17935	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
NJR02_17940	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
NJR02_17945	COG0196	riboflavin kinase activity
NJR02_17950	COG0728	peptidoglycan biosynthetic process
NJR02_17955	COG0268	Binds directly to 16S ribosomal RNA
NJR02_17960	COG0640	Transcriptional regulator
NJR02_17965	COG0583	DNA-binding transcription factor activity
NJR02_17975	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
NJR02_17980	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
NJR02_17985	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
NJR02_17995	COG1051	belongs to the nudix hydrolase family
NJR02_18010	COG0335	large ribosomal subunit rRNA binding
NJR02_18015	COG0336	Belongs to the RNA methyltransferase TrmD family
NJR02_18020	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
NJR02_18025	COG0228	four-way junction DNA binding
NJR02_18030	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
NJR02_18035	COG4137	Cytochrome C assembly protein
NJR02_18040	COG4536	flavin adenine dinucleotide binding
NJR02_18050	COG1017	nitric oxide dioxygenase activity
NJR02_18050	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
NJR02_18055	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
NJR02_18060	COG0039	L-malate dehydrogenase activity
NJR02_18065	COG4160	amino acid transport
NJR02_18070	COG4215	(ABC) transporter
NJR02_18075	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NJR02_18080	COG1126	abc transporter atp-binding protein
NJR02_18085	COG1438	arginine binding
NJR02_18090	COG2837	iron assimilation
NJR02_18095	COG3842	ATPase activity
NJR02_18110	COG0347	Belongs to the P(II) protein family
NJR02_18125	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
NJR02_18130	COG0583	DNA-binding transcription factor activity
NJR02_18145	COG1929	Belongs to the glycerate kinase type-1 family
NJR02_18150	COG2610	gluconate transmembrane transporter activity
NJR02_18155	COG3835	regulator
NJR02_18160	COG3112	Uncharacterised protein family (UPF0231)
NJR02_18180	COG1872	DUF167
NJR02_18185	COG0762	integral membrane protein
NJR02_18190	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
NJR02_18195	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
NJR02_18210	COG3022	response to hydroperoxide
NJR02_18215	COG0513	Belongs to the DEAD box helicase family
NJR02_18220	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
NJR02_18240	COG0735	belongs to the Fur family
NJR02_18245	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
NJR02_18260	COG0776	regulation of translation
NJR02_18265	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
NJR02_18275	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
NJR02_18290	COG0560	Phosphoserine phosphatase
NJR02_18300	COG5002	protein histidine kinase activity
NJR02_18300	COG3447	MASE1 domain protein
NJR02_18300	COG5001	Diguanylate cyclase
NJR02_18305	COG0813	purine-nucleoside phosphorylase activity
NJR02_18310	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
NJR02_18315	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
NJR02_18320	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
NJR02_18330	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
NJR02_18335	COG0084	hydrolase, TatD family'
NJR02_18355	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
NJR02_18360	COG0004	ammonium transporteR
NJR02_18380	COG0795	lipopolysaccharide-transporting ATPase activity
NJR02_18385	COG0795	lipopolysaccharide-transporting ATPase activity
NJR02_18390	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
NJR02_18395	COG2927	DNA polymerase III (CHI subunit)
NJR02_18400	COG0525	valine-tRNA ligase activity
NJR02_18405	COG1253	flavin adenine dinucleotide binding
NJR02_18410	COG0586	Pfam SNARE associated Golgi protein
NJR02_18415	COG1686	Belongs to the peptidase S11 family
NJR02_18455	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
NJR02_18460	COG0527	aspartate kinase activity
NJR02_18465	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
NJR02_18470	COG2137	regulation of response to DNA damage stimulus
NJR02_18475	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
NJR02_18480	COG1546	Belongs to the CinA family
NJR02_18490	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
NJR02_18510	COG3068	Protein conserved in bacteria
NJR02_18520	COG0739	heme binding
NJR02_18540	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
NJR02_18545	COG1121	(ABC) transporter
NJR02_18550	COG1108	ABC-type Mn2 Zn2 transport systems permease components
NJR02_18555	COG0583	DNA-binding transcription factor activity
NJR02_18565	COG1573	uracil-dna glycosylase
NJR02_18570	COG2962	Rard protein
NJR02_18575	COG2827	Endonuclease containing a URI domain
NJR02_18590	COG1842	Phage shock protein A
NJR02_18595	COG0204	Acyl-transferase
NJR02_18615	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
NJR02_18625	COG0484	heat shock protein binding
NJR02_18665	COG3039	Transposase
NJR02_18670	COG3039	Transposase
NJR02_18685	COG1289	transmembrane transporter activity
NJR02_18690	COG1566	PFAM secretion protein HlyD family protein
NJR02_18705	COG1051	belongs to the nudix hydrolase family
NJR02_18710	COG3150	esterase
NJR02_18725	COG3151	Protein conserved in bacteria
NJR02_18730	COG0494	nUDIX hydrolase
NJR02_18735	COG1538	Outer membrane efflux protein
NJR02_18740	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
NJR02_18740	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
NJR02_18745	COG1560	Kdo2-lipid A biosynthetic process
NJR02_18760	COG2771	luxR family
NJR02_18765	COG3916	Acyl-homoserine-lactone synthase
NJR02_18775	COG4776	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
NJR02_18780	COG2213	PTS system mannitol-specific
NJR02_18780	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
NJR02_18785	COG0246	Mannitol dehydrogenase
NJR02_18790	COG3722	fumarate hydratase activity
NJR02_18815	COG1671	Belongs to the UPF0178 family
NJR02_18830	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
NJR02_18835	COG0513	Belongs to the DEAD box helicase family
NJR02_18855	COG1575	Belongs to the MenA family. Type 1 subfamily
NJR02_18860	COG1169	isochorismate synthase
NJR02_18865	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
NJR02_18870	COG0596	Alpha beta hydrolase
NJR02_18875	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
NJR02_18885	COG0318	PFAM AMP-dependent synthetase and ligase
NJR02_18890	COG3291	Pkd domain containing protein
NJR02_18895	COG2949	membrane
NJR02_18900	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
NJR02_18910	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
NJR02_18940	COG2873	o-acetylhomoserine
NJR02_18950	COG1979	alcohol dehydrogenase
NJR02_18965	COG4221	oxidoreductase activity
NJR02_18985	COG1285	pathogenesis
NJR02_19000	COG1368	sulfuric ester hydrolase activity
NJR02_19005	COG1522	sequence-specific DNA binding
NJR02_19015	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
NJR02_19025	COG1058	Belongs to the CinA family
NJR02_19025	COG1546	Belongs to the CinA family
NJR02_19040	COG0561	phosphatase activity
NJR02_19045	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
NJR02_19055	COG1011	Hydrolase
NJR02_19070	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
NJR02_19075	COG0019	diaminopimelate decarboxylase activity
NJR02_19085	COG1965	Belongs to the frataxin family
NJR02_19090	COG0400	carboxylic ester hydrolase activity
NJR02_19095	COG3072	Adenylate cyclase
NJR02_19100	COG0181	hydroxymethylbilane synthase activity
NJR02_19110	COG2959	enzyme of heme biosynthesis
NJR02_19115	COG3071	HemY protein
NJR02_19125	COG1494	fructose-1,6-bisphosphatase
NJR02_19135	COG2226	methyltransferase
NJR02_19160	COG1733	regulation of RNA biosynthetic process
NJR02_19175	COG3932	Exopolysaccharide synthesis, ExoD
NJR02_19210	COG3039	Transposase
NJR02_19215	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
NJR02_19220	COG2022	thiamine diphosphate biosynthetic process
NJR02_19230	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
NJR02_19235	COG0352	thiamine-phosphate diphosphorylase activity
NJR02_19240	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
NJR02_19255	COG0745	RESPONSE REGULATOR receiver
NJR02_19260	COG0642	Histidine kinase
NJR02_19265	COG0189	ligase activity
NJR02_19300	COG2321	neutral zinc metallopeptidase
NJR02_19310	COG0477	Major facilitator Superfamily
NJR02_19325	COG0312	modulator of DNA gyrase
NJR02_19330	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
NJR02_19335	COG3164	Protein of unknown function
NJR02_19340	COG1530	ribonuclease E activity
NJR02_19345	COG0424	maF-like protein
NJR02_19350	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
NJR02_19355	COG1792	Involved in formation and maintenance of cell shape
NJR02_19360	COG1077	Cell shape determining protein MreB Mrl
NJR02_19405	COG1459	type II secretion system
NJR02_19410	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
NJR02_19420	COG3409	Peptidoglycan-binding domain 1 protein
NJR02_19420	COG3267	Type II secretory pathway component ExeA
NJR02_19470	COG0387	Pfam Sodium calcium exchanger
NJR02_19475	COG2986	histidine ammonia-lyase
NJR02_19480	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
NJR02_19485	COG0010	Belongs to the arginase family
NJR02_19490	COG1228	amidohydrolase
NJR02_19495	COG2188	Transcriptional regulator
NJR02_19500	COG0288	reversible hydration of carbon dioxide
NJR02_19510	COG2177	Part of the ABC transporter FtsEX involved in
NJR02_19515	COG2884	Cell division ATP-binding protein ftsE
NJR02_19520	COG0552	protein localization to endoplasmic reticulum
NJR02_19525	COG0742	ribosomal rna small subunit methyltransferase
NJR02_19550	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
NJR02_19560	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
NJR02_19570	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
NJR02_19580	COG2095	MarC family integral membrane protein
NJR02_19590	COG1301	dicarboxylic acid transport
NJR02_19605	COG0583	DNA-binding transcription factor activity
NJR02_19620	COG3714	YhhN family
NJR02_19635	COG2358	TRAP transporter, solute receptor (TAXI family
NJR02_19640	COG1770	oligopeptidase
NJR02_19655	COG4221	oxidoreductase activity
NJR02_19670	COG2249	NAD(P)H dehydrogenase (quinone) activity
NJR02_19725	COG0203	ribosomal protein L17
NJR02_19730	COG0202	RNA polymerase activity
NJR02_19735	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
NJR02_19740	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
NJR02_19745	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
NJR02_19750	COG0257	Belongs to the bacterial ribosomal protein bL36 family
NJR02_19755	COG0201	protein transport
NJR02_19760	COG0200	Binds to the 23S rRNA
NJR02_19765	COG1841	ribosomal large subunit assembly
NJR02_19770	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
NJR02_19775	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
NJR02_19780	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
NJR02_19785	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
NJR02_19790	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
NJR02_19795	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
NJR02_19800	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
NJR02_19805	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
NJR02_19810	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
NJR02_19815	COG0255	Belongs to the universal ribosomal protein uL29 family
NJR02_19820	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
NJR02_19825	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
NJR02_19830	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
NJR02_19835	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
NJR02_19840	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
NJR02_19845	COG0089	rRNA binding
NJR02_19850	COG0088	Forms part of the polypeptide exit tunnel
NJR02_19855	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
NJR02_19860	COG0051	transcription antitermination factor activity, RNA binding
NJR02_19870	COG2205	protein histidine kinase activity
NJR02_19880	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
NJR02_19885	COG2183	response to ionizing radiation
NJR02_19900	COG0596	Alpha beta hydrolase
NJR02_19905	COG1040	competence protein
NJR02_19910	COG0316	Belongs to the HesB IscA family
NJR02_19910	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
NJR02_19915	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
NJR02_19920	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
NJR02_19925	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
NJR02_19930	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
NJR02_19935	COG4942	peptidase
NJR02_19945	COG1609	Transcriptional regulator
NJR02_19960	COG0800	Aldolase
NJR02_19965	COG0129	dihydroxy-acid dehydratase activity
NJR02_19970	COG3265	gluconokinase activity
NJR02_19975	COG2610	gluconate transmembrane transporter activity
NJR02_19980	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
NJR02_19985	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
NJR02_19995	COG0456	acetyltransferase
NJR02_20005	COG1490	D-aminoacyl-tRNA deacylase activity
NJR02_20010	COG1295	ribonuclease BN
NJR02_20015	COG1217	gtp-binding protein TYPA
NJR02_20020	COG0174	glutamine synthetase
NJR02_20030	COG3852	Histidine kinase
NJR02_20040	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
NJR02_20045	COG0635	Involved in the biosynthesis of porphyrin-containing compound
NJR02_20055	COG3078	GTPase activator activity
NJR02_20065	COG0218	Necessary for normal cell division and for the maintenance of normal septation
NJR02_20070	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
NJR02_20075	COG0408	coproporphyrinogen oxidase activity
NJR02_20080	COG0009	L-threonylcarbamoyladenylate synthase
NJR02_20085	COG0551	DNA topoisomerase type I activity
NJR02_20090	COG2922	Belongs to the Smg family
NJR02_20095	COG0758	DNA mediated transformation
NJR02_20105	COG0242	peptide deformylase activity
NJR02_20110	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
NJR02_20115	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
NJR02_20115	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
NJR02_20120	COG0569	domain protein
NJR02_20125	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
NJR02_20130	COG1322	Protein conserved in bacteria
NJR02_20150	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
NJR02_20160	COG0519	Catalyzes the synthesis of GMP from XMP
NJR02_20160	COG0518	GMP synthase (glutamine-hydrolyzing) activity
NJR02_20170	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
NJR02_20175	COG1396	sequence-specific DNA binding
NJR02_20180	COG1012	belongs to the aldehyde dehydrogenase family
NJR02_20190	COG2962	Rard protein
NJR02_20200	COG1280	lysine exporter protein (LysE YggA)
NJR02_20240	COG0583	DNA-binding transcription factor activity
NJR02_20245	COG1943	Transposase
NJR02_20255	COG0210	DNA helicase
NJR02_20270	COG1744	ABC transporter substrate-binding protein PnrA-like
NJR02_20275	COG3845	ABC transporter
NJR02_20280	COG4603	Belongs to the binding-protein-dependent transport system permease family
NJR02_20285	COG1079	Belongs to the binding-protein-dependent transport system permease family
NJR02_20295	COG0583	DNA-binding transcription factor activity
NJR02_20320	COG1262	PFAM Formylglycine-generating sulfatase enzyme
NJR02_20325	COG0385	Bile acid
NJR02_20330	COG0531	amino acid
NJR02_20335	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
NJR02_20340	COG0531	amino acid
NJR02_20345	COG2731	YhcH YjgK YiaL family protein
NJR02_20350	COG3250	beta-galactosidase activity
NJR02_20355	COG1609	Transcriptional regulator
NJR02_20400	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
NJR02_20405	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
NJR02_20405	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
NJR02_20410	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
NJR02_20415	COG3074	FtsZ-dependent cytokinesis
NJR02_20425	COG1045	serine acetyltransferase
NJR02_20435	COG0745	RESPONSE REGULATOR receiver
NJR02_20440	COG2205	protein histidine kinase activity
NJR02_20445	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
NJR02_20450	COG0534	Mate efflux family protein
NJR02_20465	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
NJR02_20470	COG2937	Belongs to the GPAT DAPAT family
NJR02_20475	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
NJR02_20480	COG3161	chorismate lyase activity
NJR02_20485	COG1580	Controls the rotational direction of flagella during chemotaxis
NJR02_20500	COG1609	Transcriptional regulator
NJR02_20525	COG0859	PFAM glycosyl transferase family 9
NJR02_20530	COG3306	glycosyltransferase involved in LPS biosynthesis
NJR02_20545	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
NJR02_20555	COG0156	8-amino-7-oxononanoate synthase activity
NJR02_20560	COG1063	alcohol dehydrogenase
NJR02_20580	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
NJR02_20585	COG2166	iron-sulfur cluster assembly
NJR02_20590	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
NJR02_20620	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
NJR02_20625	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
NJR02_20630	COG1739	Uncharacterized protein family UPF0029
NJR02_20635	COG0006	proline dipeptidase activity
NJR02_20640	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
NJR02_20645	COG1250	3-hydroxyacyl-CoA dehydrogenase
NJR02_20645	COG1024	Enoyl-CoA hydratase
NJR02_20650	COG0183	Belongs to the thiolase family
NJR02_20680	COG0425	Belongs to the sulfur carrier protein TusA family
NJR02_20685	COG0251	oxidation-reduction process
NJR02_20705	COG2885	chlorophyll binding
NJR02_20715	COG1335	isochorismatase
NJR02_20720	COG2818	Glycosylase
NJR02_20725	COG0752	glycyl-tRNA synthetase alpha subunit
NJR02_20730	COG0751	glycine-tRNA ligase activity
NJR02_20750	COG5001	Diguanylate cyclase
NJR02_20750	COG2203	Gaf domain
NJR02_20750	COG3706	GGDEF domain
NJR02_20750	COG4251	negative regulation of phosphorylation
NJR02_20770	COG0814	amino acid
NJR02_20775	COG0814	amino acid
NJR02_20780	COG3033	Beta-eliminating lyase
NJR02_20785	COG3039	Transposase
NJR02_20790	COG0348	domain, Protein
NJR02_20800	COG0446	pyridine nucleotide-disulphide oxidoreductase
NJR02_20805	COG0426	domain, Protein
NJR02_20805	COG1773	rubredoxin
NJR02_20810	COG3604	Transcriptional regulator
NJR02_20815	COG1609	Transcriptional regulator
NJR02_20855	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
NJR02_20870	COG2960	long-chain fatty acid transporting porin activity
NJR02_20880	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
NJR02_20895	COG3118	belongs to the thioredoxin family
NJR02_20900	COG0513	Belongs to the DEAD box helicase family
NJR02_20905	COG0248	Ppx GppA phosphatase
NJR02_20915	COG0742	ribosomal rna small subunit methyltransferase
NJR02_20935	COG0084	hydrolase, TatD family'
NJR02_20940	COG0805	protein transport
NJR02_20945	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
NJR02_20950	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
NJR02_20955	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
NJR02_20960	COG3165	ubiquinone biosynthetic process from chorismate
NJR02_20970	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
NJR02_20975	COG0402	S-adenosylhomocysteine deaminase activity
NJR02_21010	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
NJR02_21015	COG0848	biopolymer transport protein
NJR02_21020	COG0811	peptide transport
NJR02_21025	COG0811	peptide transport
NJR02_21035	COG2771	luxR family
NJR02_21040	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
NJR02_21045	COG1349	DNA-binding transcription factor activity
NJR02_21050	COG0745	RESPONSE REGULATOR receiver
NJR02_21055	COG2205	protein histidine kinase activity
NJR02_21065	COG4452	Inner membrane protein CreD
NJR02_21070	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
NJR02_21075	COG0355	proton-transporting ATP synthase activity, rotational mechanism
NJR02_21080	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
NJR02_21085	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
NJR02_21090	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
NJR02_21095	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
NJR02_21100	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
NJR02_21110	COG0356	it plays a direct role in the translocation of protons across the membrane
NJR02_21120	COG1475	DNA binding
NJR02_21125	COG1192	Involved in chromosome partitioning
NJR02_21130	COG0357	Ribosomal RNA small subunit methyltransferase G
NJR02_21135	COG0445	tRNA wobble uridine modification
NJR02_21140	COG0716	FMN binding
NJR02_21145	COG4774	siderophore transport
NJR02_21150	COG4615	Cyclic peptide transporter
NJR02_21155	COG1120	ATPase activity
NJR02_21160	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
NJR02_21170	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
NJR02_21175	COG0706	membrane insertase activity
NJR02_21180	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
NJR02_21185	COG0594	ribonuclease P activity
NJR02_21190	COG0230	Belongs to the bacterial ribosomal protein bL34 family
NJR02_21195	COG1126	abc transporter atp-binding protein
NJR02_21225	COG2826	transposase and inactivated derivatives, IS30 family
NJR02_21235	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
NJR02_21240	COG0625	glutathione transferase activity
NJR02_21275	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
NJR02_21285	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
NJR02_21300	COG2009	succinate dehydrogenase
NJR02_21310	COG2169	Transcriptional regulator
NJR02_21310	COG1917	Cupin 2, conserved barrel domain protein
NJR02_21320	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
NJR02_21440	COG3039	Transposase
NJR02_21515	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
NJR02_21545	COG4974	Belongs to the 'phage' integrase family
NJR02_21600	COG3941	tape measure
NJR02_21630	COG4397	Mu-like prophage major head subunit gpT
NJR02_21635	COG4388	Caudovirus prohead serine protease
NJR02_21655	COG4383	Mu-like prophage protein gp29
NJR02_21660	COG4373	Mu-like prophage FluMu protein gp28
NJR02_21670	COG0640	Transcriptional regulator
NJR02_21795	COG3039	Transposase
NJR02_21920	COG3039	Transposase
NJR02_21935	COG3039	Transposase
NJR02_22025	COG0592	DNA-directed DNA polymerase activity
NJR02_22195	COG1660	Displays ATPase and GTPase activities
NJR02_22285	COG2205	protein histidine kinase activity
NJR02_22315	COG1695	Transcriptional regulator
NJR02_22340	COG3173	Aminoglycoside phosphotransferase
NJR02_22355	COG5001	Diguanylate cyclase
NJR02_22355	COG3300	MHYT domain
NJR02_22430	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
NJR02_22440	COG0789	Transcriptional regulator
NJR02_22470	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
NJR02_22495	COG1230	cation diffusion facilitator family transporter
NJR02_22500	COG0640	Transcriptional regulator