locus-tag class description C0708_00115 PF00665 Integrase core domain C0708_00120 PF01695 IstB-like ATP binding protein C0708_00130 PF13302 Acetyltransferase (GNAT) domain C0708_00135 PF13302 Acetyltransferase (GNAT) domain C0708_00150 PF00871 Acetokinase family C0708_00155 PF00924 Mechanosensitive ion channel C0708_00160 PF17969 L,D-transpeptidase C-terminal domain C0708_00160 PF03734 L,D-transpeptidase catalytic domain C0708_00165 PF00474 Sodium:solute symporter family C0708_00175 PF13411 MerR HTH family regulatory protein C0708_00180 PF13592 Winged helix-turn helix C0708_00180 PF13358 DDE superfamily endonuclease C0708_00190 PF13358 DDE superfamily endonuclease C0708_00190 PF13592 Winged helix-turn helix C0708_00210 PF02525 Flavodoxin-like fold C0708_00215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_00215 PF03466 LysR substrate binding domain C0708_00220 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ C0708_00230 PF12848 ABC transporter C0708_00230 PF00005 ABC transporter C0708_00235 PF00478 IMP dehydrogenase / GMP reductase domain C0708_00235 PF00571 CBS domain C0708_00245 PF07282 Putative transposase DNA-binding domain C0708_00245 PF01385 Probable transposase C0708_00245 PF12323 Helix-turn-helix domain C0708_00250 PF00267 Gram-negative porin C0708_00255 PF01584 CheW-like domain C0708_00255 PF00072 Response regulator receiver domain C0708_00260 PF13472 GDSL-like Lipase/Acylhydrolase family C0708_00265 PF00005 ABC transporter C0708_00275 PF01370 NAD dependent epimerase/dehydratase family C0708_00275 PF08338 Domain of unknown function (DUF1731) C0708_00280 PF12792 CSS motif domain associated with EAL C0708_00280 PF00563 EAL domain C0708_00285 PF00155 Aminotransferase class I and II C0708_00295 PF02390 Putative methyltransferase C0708_00300 PF04320 Protein with unknown function (DUF469) C0708_00305 PF04960 Glutaminase C0708_00310 PF00581 Rhodanese-like domain C0708_00315 PF06004 Bacterial protein of unknown function (DUF903) C0708_00325 PF00561 alpha/beta hydrolase fold C0708_00345 PF06877 Regulator of ribonuclease activity B C0708_00350 PF03707 Bacterial signalling protein N terminal repeat C0708_00350 PF00563 EAL domain C0708_00350 PF00990 Diguanylate cyclase, GGDEF domain C0708_00370 PF09905 DNA-binding protein VF530 C0708_00375 PF02666 Phosphatidylserine decarboxylase C0708_00380 PF03193 RsgA GTPase C0708_00385 PF00929 Exonuclease C0708_00425 PF00313 'Cold-shock' DNA-binding domain C0708_00435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C0708_00435 PF00672 HAMP domain C0708_00440 PF00749 tRNA synthetases class I (E and Q), catalytic domain C0708_00505 PF02472 Biopolymer transport protein ExbD/TolR C0708_00510 PF01618 MotA/TolQ/ExbB proton channel family C0708_00515 PF01618 MotA/TolQ/ExbB proton channel family C0708_00525 PF07715 TonB-dependent Receptor Plug Domain C0708_00525 PF00593 TonB dependent receptor C0708_00530 PF00528 Binding-protein-dependent transport system inner membrane component C0708_00535 PF00528 Binding-protein-dependent transport system inner membrane component C0708_00535 PF12911 N-terminal TM domain of oligopeptide transport permease C C0708_00540 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C0708_00550 PF00005 ABC transporter C0708_00550 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C0708_00570 PF00156 Phosphoribosyl transferase domain C0708_00580 PF07417 Sigma factor-binding transcriptional regulator Crl C0708_00585 PF00696 Amino acid kinase family C0708_00585 PF01472 PUA domain C0708_00590 PF00171 Aldehyde dehydrogenase family C0708_00600 PF00582 Universal stress protein family C0708_00615 PF01568 Molydopterin dinucleotide binding domain C0708_00615 PF04324 BFD-like [2Fe-2S] binding domain C0708_00615 PF00384 Molybdopterin oxidoreductase C0708_00615 PF04879 Molybdopterin oxidoreductase Fe4S4 domain C0708_00630 PF00005 ABC transporter C0708_00635 PF00528 Binding-protein-dependent transport system inner membrane component C0708_00650 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C0708_00650 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain C0708_00650 PF18267 Rubredoxin NAD+ reductase C-terminal domain C0708_00650 PF13806 Rieske-like [2Fe-2S] domain C0708_00650 PF07992 Pyridine nucleotide-disulphide oxidoreductase C0708_00650 PF04324 BFD-like [2Fe-2S] binding domain C0708_00660 PF04227 Indigoidine synthase A like protein C0708_00665 PF00194 Eukaryotic-type carbonic anhydrase C0708_00680 PF00994 Probable molybdopterin binding domain C0708_00690 PF06738 Putative threonine/serine exporter C0708_00695 PF12821 Threonine/Serine exporter, ThrE C0708_00705 PF00571 CBS domain C0708_00705 PF00005 ABC transporter C0708_00710 PF00528 Binding-protein-dependent transport system inner membrane component C0708_00715 PF04069 Substrate binding domain of ABC-type glycine betaine transport system C0708_00720 PF01507 Phosphoadenosine phosphosulfate reductase family C0708_00725 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain C0708_00725 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C0708_00730 PF00175 Oxidoreductase NAD-binding domain C0708_00730 PF00667 FAD binding domain C0708_00730 PF00258 Flavodoxin C0708_00735 PF02567 Phenazine biosynthesis-like protein C0708_00740 PF00152 tRNA synthetases class II (D, K and N) C0708_00740 PF01336 OB-fold nucleic acid binding domain C0708_00765 PF03616 Sodium/glutamate symporter C0708_00770 PF00710 Asparaginase, N-terminal C0708_00770 PF17763 Glutaminase/Asparaginase C-terminal domain C0708_00775 PF07023 Protein of unknown function (DUF1315) C0708_00780 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain C0708_00780 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain C0708_00800 PF01343 Peptidase family S49 C0708_00810 PF00881 Nitroreductase family C0708_00820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C0708_00820 PF02743 Cache domain C0708_00820 PF00672 HAMP domain C0708_00825 PF00132 Bacterial transferase hexapeptide (six repeats) C0708_00825 PF12464 Maltose acetyltransferase C0708_00835 PF00107 Zinc-binding dehydrogenase C0708_00835 PF08240 Alcohol dehydrogenase GroES-like domain C0708_00840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_00840 PF03466 LysR substrate binding domain C0708_00850 PF00474 Sodium:solute symporter family C0708_00855 PF06196 Protein of unknown function (DUF997) C0708_00860 PF00289 Biotin carboxylase, N-terminal domain C0708_00860 PF02785 Biotin carboxylase C-terminal domain C0708_00860 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C0708_00865 PF00364 Biotin-requiring enzyme C0708_00870 PF01220 Dehydroquinase class II C0708_00875 PF16177 Acetyl-coenzyme A synthetase N-terminus C0708_00875 PF00501 AMP-binding enzyme C0708_00875 PF13193 AMP-binding enzyme C-terminal domain C0708_00880 PF03707 Bacterial signalling protein N terminal repeat C0708_00880 PF00563 EAL domain C0708_00880 PF00990 Diguanylate cyclase, GGDEF domain C0708_00890 PF02613 Nitrate reductase delta subunit C0708_00900 PF00464 Serine hydroxymethyltransferase C0708_00910 PF03477 ATP cone domain C0708_00915 PF01872 RibD C-terminal domain C0708_00915 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region C0708_00920 PF00677 Lumazine binding domain C0708_00930 PF00885 6,7-dimethyl-8-ribityllumazine synthase C0708_00935 PF01029 NusB family C0708_00940 PF00586 AIR synthase related protein, N-terminal domain C0708_00940 PF02769 AIR synthase related protein, C-terminal domain C0708_00945 PF04608 Phosphatidylglycerophosphatase A C0708_00950 PF00005 ABC transporter C0708_00950 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C0708_00955 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C0708_00975 PF00348 Polyprenyl synthetase C0708_00980 PF02609 Exonuclease VII small subunit C0708_00985 PF01618 MotA/TolQ/ExbB proton channel family C0708_00990 PF13677 Membrane MotB of proton-channel complex MotA/MotB C0708_00990 PF00691 OmpA family C0708_00995 PF03449 Transcription elongation factor, N-terminal C0708_00995 PF01272 Transcription elongation factor, GreA/GreB, C-term C0708_01005 PF01985 CRS1 / YhbY (CRM) domain C0708_01010 PF01728 FtsJ-like methyltransferase C0708_01015 PF17862 AAA+ lid domain C0708_01015 PF00004 ATPase family associated with various cellular activities (AAA) C0708_01015 PF06480 FtsH Extracellular C0708_01015 PF01434 Peptidase family M41 C0708_01020 PF00809 Pterin binding enzyme C0708_01025 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C0708_01025 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C0708_01025 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C0708_01025 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C0708_01030 PF00121 Triosephosphate isomerase C0708_01035 PF03840 Preprotein translocase SecG subunit C0708_01050 PF17384 RimP C-terminal SH3 domain C0708_01050 PF02576 RimP N-terminal domain C0708_01055 PF00575 S1 RNA binding domain C0708_01055 PF08529 NusA N-terminal domain C0708_01055 PF13184 NusA-like KH domain C0708_01060 PF11987 Translation-initiation factor 2 C0708_01060 PF04760 Translation initiation factor IF-2, N-terminal region C0708_01060 PF08364 Bacterial translation initiation factor IF-2 associated region C0708_01060 PF00009 Elongation factor Tu GTP binding domain C0708_01065 PF02033 Ribosome-binding factor A C0708_01070 PF09157 Pseudouridine synthase II TruB, C-terminal C0708_01070 PF01509 TruB family pseudouridylate synthase (N terminal domain) C0708_01070 PF16198 tRNA pseudouridylate synthase B C-terminal domain C0708_01075 PF00312 Ribosomal protein S15 C0708_01080 PF01138 3' exoribonuclease family, domain 1 C0708_01080 PF00013 KH domain C0708_01080 PF00575 S1 RNA binding domain C0708_01080 PF03725 3' exoribonuclease family, domain 2 C0708_01080 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain C0708_01085 PF07690 Major Facilitator Superfamily C0708_01090 PF02635 DsrE/DsrF-like family C0708_01095 PF06476 Protein of unknown function (DUF1090) C0708_01110 PF12838 4Fe-4S dicluster domain C0708_01120 PF03734 L,D-transpeptidase catalytic domain C0708_01120 PF17969 L,D-transpeptidase C-terminal domain C0708_01130 PF01523 Putative modulator of DNA gyrase C0708_01140 PF01523 Putative modulator of DNA gyrase C0708_01145 PF00258 Flavodoxin C0708_01150 PF02899 Phage integrase, N-terminal SAM-like domain C0708_01150 PF00589 Phage integrase family C0708_01155 PF01741 Large-conductance mechanosensitive channel, MscL C0708_01175 PF01368 DHH family C0708_01175 PF02272 DHHA1 domain C0708_01175 PF17768 RecJ OB domain C0708_01180 PF13411 MerR HTH family regulatory protein C0708_01195 PF02508 Rnf-Nqr subunit, membrane protein C0708_01205 PF04055 Radical SAM superfamily C0708_01205 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family C0708_01220 PF04359 Protein of unknown function (DUF493) C0708_01230 PF03330 Lytic transglycolase C0708_01230 PF05036 Sporulation related domain C0708_01235 PF13406 Transglycosylase SLT domain C0708_01250 PF02590 Predicted SPOUT methyltransferase C0708_01260 PF01467 Cytidylyltransferase-like C0708_01275 PF08264 Anticodon-binding domain of tRNA C0708_01275 PF13603 Leucyl-tRNA synthetase, Domain 2 C0708_01275 PF00133 tRNA synthetases class I (I, L, M and V) C0708_01280 PF07295 Zinc-ribbon containing domain C0708_01285 PF00795 Carbon-nitrogen hydrolase C0708_01290 PF00571 CBS domain C0708_01290 PF03471 Transporter associated domain C0708_01295 PF02130 Uncharacterized protein family UPF0054 C0708_01300 PF02562 PhoH-like protein C0708_01340 PF13419 Haloacid dehalogenase-like hydrolase C0708_01365 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C0708_01365 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C0708_01375 PF03171 2OG-Fe(II) oxygenase superfamily C0708_01375 PF14226 non-haem dioxygenase in morphine synthesis N-terminal C0708_01380 PF03180 NLPA lipoprotein C0708_01390 PF00528 Binding-protein-dependent transport system inner membrane component C0708_01395 PF08207 Elongation factor P (EF-P) KOW-like domain C0708_01395 PF01132 Elongation factor P (EF-P) OB domain C0708_01395 PF09285 Elongation factor P, C-terminal C0708_01405 PF00478 IMP dehydrogenase / GMP reductase domain C0708_01410 PF08443 RimK-like ATP-grasp domain C0708_01410 PF18030 RimK PreATP-grasp domain C0708_01415 PF00512 His Kinase A (phospho-acceptor) domain C0708_01415 PF08521 Two-component sensor kinase N-terminal C0708_01415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C0708_01420 PF00486 Transcriptional regulatory protein, C terminal C0708_01420 PF00072 Response regulator receiver domain C0708_01430 PF00106 short chain dehydrogenase C0708_01440 PF00501 AMP-binding enzyme C0708_01450 PF13847 Methyltransferase domain C0708_01470 PF02313 Fumarate reductase subunit D C0708_01475 PF02300 Fumarate reductase subunit C C0708_01480 PF13085 2Fe-2S iron-sulfur cluster binding domain C0708_01480 PF13183 4Fe-4S dicluster domain C0708_01485 PF00890 FAD binding domain C0708_01485 PF02910 Fumarate reductase flavoprotein C-term C0708_01490 PF02743 Cache domain C0708_01490 PF00672 HAMP domain C0708_01490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C0708_01495 PF03009 Glycerophosphoryl diester phosphodiesterase family C0708_01500 PF12794 Mechanosensitive ion channel inner membrane domain 1 C0708_01500 PF12795 Mechanosensitive ion channel porin domain C0708_01500 PF00924 Mechanosensitive ion channel C0708_01510 PF01476 LysM domain C0708_01510 PF01551 Peptidase family M23 C0708_01510 PF08525 Opacity-associated protein A N-terminal motif C0708_01525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_01525 PF03466 LysR substrate binding domain C0708_01570 PF11741 AMIN domain C0708_01570 PF00263 Bacterial type II and III secretion system protein C0708_01570 PF07660 Secretin and TonB N terminus short domain C0708_01570 PF03958 Bacterial type II/III secretion system short domain C0708_01575 PF01202 Shikimate kinase C0708_01580 PF01761 3-dehydroquinate synthase C0708_01585 PF05036 Sporulation related domain C0708_01590 PF02086 D12 class N6 adenine-specific DNA methyltransferase C0708_01595 PF00834 Ribulose-phosphate 3 epimerase family C0708_01600 PF13419 Haloacid dehalogenase-like hydrolase C0708_01605 PF00579 tRNA synthetases class I (W and Y) C0708_01615 PF00117 Glutamine amidotransferase class-I C0708_01620 PF00202 Aminotransferase class-III C0708_01625 PF04958 Arginine N-succinyltransferase beta subunit C0708_01630 PF00171 Aldehyde dehydrogenase family C0708_01645 PF13419 Haloacid dehalogenase-like hydrolase C0708_01650 PF07690 Major Facilitator Superfamily C0708_01660 PF07859 alpha/beta hydrolase fold C0708_01670 PF03600 Citrate transporter C0708_01670 PF02080 TrkA-C domain C0708_01715 PF06071 Protein of unknown function (DUF933) C0708_01715 PF01926 50S ribosome-binding GTPase C0708_01720 PF01195 Peptidyl-tRNA hydrolase C0708_01725 PF14572 Phosphoribosyl synthetase-associated domain C0708_01725 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase C0708_01735 PF08544 GHMP kinases C terminal C0708_01735 PF00288 GHMP kinases N terminal domain C0708_01740 PF03550 Outer membrane lipoprotein LolB C0708_01745 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain C0708_01745 PF01488 Shikimate / quinate 5-dehydrogenase C0708_01745 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain C0708_01750 PF03462 PCRF domain C0708_01750 PF00472 RF-1 domain C0708_01755 PF17827 PrmC N-terminal domain C0708_01755 PF13847 Methyltransferase domain C0708_01770 PF00793 DAHP synthetase I family C0708_01775 PF00375 Sodium:dicarboxylate symporter family C0708_01780 PF01228 Glycine radical C0708_01785 PF03167 Uracil DNA glycosylase superfamily C0708_01800 PF00923 Transaldolase/Fructose-6-phosphate aldolase C0708_01805 PF01235 Sodium:alanine symporter family C0708_01810 PF00144 Beta-lactamase C0708_01825 PF07690 Major Facilitator Superfamily C0708_01835 PF03652 Holliday junction resolvase C0708_01845 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain C0708_01845 PF02951 Prokaryotic glutathione synthetase, N-terminal domain C0708_01850 PF04452 RNA methyltransferase C0708_01855 PF04231 Endonuclease I C0708_01860 PF17283 SprT-like zinc ribbon domain C0708_01860 PF10263 SprT-like family C0708_01865 PF02773 S-adenosylmethionine synthetase, C-terminal domain C0708_01865 PF02772 S-adenosylmethionine synthetase, central domain C0708_01865 PF00438 S-adenosylmethionine synthetase, N-terminal domain C0708_01870 PF02780 Transketolase, C-terminal domain C0708_01870 PF02779 Transketolase, pyrimidine binding domain C0708_01870 PF00456 Transketolase, thiamine diphosphate binding domain C0708_01885 PF03702 Anhydro-N-acetylmuramic acid kinase C0708_01890 PF08525 Opacity-associated protein A N-terminal motif C0708_01890 PF01551 Peptidase family M23 C0708_01890 PF01476 LysM domain C0708_01895 PF00579 tRNA synthetases class I (W and Y) C0708_01900 PF01204 Trehalase C0708_01910 PF01161 Phosphatidylethanolamine-binding protein C0708_01920 PF03466 LysR substrate binding domain C0708_01920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_01930 PF00155 Aminotransferase class I and II C0708_01935 PF07690 Major Facilitator Superfamily C0708_01940 PF03466 LysR substrate binding domain C0708_01940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_01945 PF00106 short chain dehydrogenase C0708_01950 PF08496 Peptidase family S49 N-terminal C0708_01950 PF01343 Peptidase family S49 C0708_01955 PF04996 Succinylarginine dihydrolase C0708_01960 PF08272 Topoisomerase I zinc-ribbon-like C0708_01960 PF01131 DNA topoisomerase C0708_01960 PF01751 Toprim domain C0708_01960 PF01396 Topoisomerase DNA binding C4 zinc finger C0708_01970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C0708_01970 PF08447 PAS fold C0708_01980 PF01869 BadF/BadG/BcrA/BcrD ATPase family C0708_01990 PF00005 ABC transporter C0708_01990 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C0708_02000 PF12911 N-terminal TM domain of oligopeptide transport permease C C0708_02000 PF00528 Binding-protein-dependent transport system inner membrane component C0708_02010 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C0708_02020 PF00072 Response regulator receiver domain C0708_02025 PF01022 Bacterial regulatory protein, arsR family C0708_02030 PF01758 Sodium Bile acid symporter family C0708_02035 PF03960 ArsC family C0708_02045 PF02049 Flagellar hook-basal body complex protein FliE C0708_02050 PF01514 Secretory protein of YscJ/FliF family C0708_02050 PF08345 Flagellar M-ring protein C-terminal C0708_02055 PF01706 FliG C-terminal domain C0708_02055 PF14841 FliG middle domain C0708_02055 PF14842 FliG N-terminal domain C0708_02065 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C0708_02065 PF18269 T3SS EscN ATPase C-terminal domain C0708_02085 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term C0708_02085 PF02154 Flagellar motor switch protein FliM C0708_02090 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term C0708_02105 PF01313 Bacterial export proteins, family 3 C0708_02110 PF01311 Bacterial export proteins, family 1 C0708_02115 PF01312 FlhB HrpN YscU SpaS Family C0708_02130 PF10609 NUBPL iron-transfer P-loop NTPase C0708_02135 PF04539 Sigma-70 region 3 C0708_02135 PF04542 Sigma-70 region 2 C0708_02135 PF04545 Sigma-70, region 4 C0708_02140 PF00072 Response regulator receiver domain C0708_02145 PF04344 Chemotaxis phosphatase, CheZ C0708_02150 PF01627 Hpt domain C0708_02150 PF00072 Response regulator receiver domain C0708_02150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C0708_02150 PF01584 CheW-like domain C0708_02150 PF02895 Signal transducing histidine kinase, homodimeric domain C0708_02155 PF01339 CheB methylesterase C0708_02155 PF00072 Response regulator receiver domain C0708_02165 PF13677 Membrane MotB of proton-channel complex MotA/MotB C0708_02165 PF00691 OmpA family C0708_02170 PF13614 AAA domain C0708_02180 PF01584 CheW-like domain C0708_02195 PF03379 CcmB protein C0708_02200 PF01578 Cytochrome C assembly protein C0708_02205 PF04995 Heme exporter protein D (CcmD) C0708_02210 PF03100 CcmE C0708_02220 PF08534 Redoxin C0708_02235 PF04333 MlaA lipoprotein C0708_02240 PF13006 Insertion element 4 transposase N-terminal C0708_02240 PF01609 Transposase DDE domain C0708_02245 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain C0708_02245 PF02777 Iron/manganese superoxide dismutases, C-terminal domain C0708_02250 PF00462 Glutaredoxin C0708_02255 PF01029 NusB family C0708_02255 PF01189 16S rRNA methyltransferase RsmB/F C0708_02270 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region C0708_02270 PF01243 Pyridoxamine 5'-phosphate oxidase C0708_02275 PF03466 LysR substrate binding domain C0708_02275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_02280 PF01546 Peptidase family M20/M25/M40 C0708_02300 PF13508 Acetyltransferase (GNAT) domain C0708_02315 PF01081 KDPG and KHG aldolase C0708_02335 PF05930 Prophage CP4-57 regulatory protein (AlpA) C0708_02345 PF00816 H-NS histone family C0708_02385 PF02146 Sir2 family C0708_02405 PF11799 impB/mucB/samB family C-terminal domain C0708_02405 PF00817 impB/mucB/samB family C0708_02405 PF13438 Domain of unknown function (DUF4113) C0708_02410 PF00717 Peptidase S24-like C0708_02415 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin C0708_02425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C0708_02425 PF00672 HAMP domain C0708_02450 PF09722 Protein of unknown function (DUF2384) C0708_02465 PF13356 Arm DNA-binding domain C0708_02465 PF00589 Phage integrase family C0708_02475 PF01668 SmpB protein C0708_02480 PF03364 Polyketide cyclase / dehydrase and lipid transport C0708_02490 PF13460 NAD(P)H-binding C0708_02495 PF04355 SmpA / OmlA family C0708_02500 PF00465 Iron-containing alcohol dehydrogenase C0708_02505 PF01048 Phosphorylase superfamily C0708_02510 PF00849 RNA pseudouridylate synthase C0708_02515 PF01156 Inosine-uridine preferring nucleoside hydrolase C0708_02530 PF07509 Protein of unknown function (DUF1523) C0708_02540 PF01810 LysE type translocator C0708_02550 PF02080 TrkA-C domain C0708_02550 PF00999 Sodium/hydrogen exchanger family C0708_02550 PF03471 Transporter associated domain C0708_02560 PF02557 D-alanyl-D-alanine carboxypeptidase C0708_02565 PF07687 Peptidase dimerisation domain C0708_02565 PF01546 Peptidase family M20/M25/M40 C0708_02570 PF03960 ArsC family C0708_02580 PF03606 C4-dicarboxylate anaerobic carrier C0708_02595 PF03605 Anaerobic c4-dicarboxylate membrane transporter C0708_02600 PF00152 tRNA synthetases class II (D, K and N) C0708_02600 PF01336 OB-fold nucleic acid binding domain C0708_02615 PF00202 Aminotransferase class-III C0708_02620 PF06968 Biotin and Thiamin Synthesis associated domain C0708_02620 PF04055 Radical SAM superfamily C0708_02630 PF08241 Methyltransferase domain C0708_02630 PF12697 Alpha/beta hydrolase family C0708_02640 PF01435 Peptidase family M48 C0708_02650 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster C0708_02650 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region C0708_02650 PF07992 Pyridine nucleotide-disulphide oxidoreductase C0708_02660 PF04325 Protein of unknown function (DUF465) C0708_02705 PF00440 Bacterial regulatory proteins, tetR family C0708_02705 PF08359 YsiA-like protein, C-terminal region C0708_02720 PF00877 NlpC/P60 family C0708_02725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_02725 PF03466 LysR substrate binding domain C0708_02745 PF08003 Protein of unknown function (DUF1698) C0708_02750 PF13649 Methyltransferase domain C0708_02755 PF01904 Protein of unknown function DUF72 C0708_02765 PF01336 OB-fold nucleic acid binding domain C0708_02765 PF02938 GAD domain C0708_02765 PF00152 tRNA synthetases class II (D, K and N) C0708_02770 PF01709 Transcriptional regulator C0708_02780 PF00884 Sulfatase C0708_02780 PF08019 Phosphoethanolamine transferase EptA/EptB C0708_02785 PF00480 ROK family C0708_02785 PF01047 MarR family C0708_02790 PF01979 Amidohydrolase family C0708_02795 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase C0708_02800 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 C0708_02800 PF00367 phosphotransferase system, EIIB C0708_02800 PF02378 Phosphotransferase system, EIIC C0708_02805 PF03173 Putative carbohydrate binding domain C0708_02805 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain C0708_02805 PF00728 Glycosyl hydrolase family 20, catalytic domain C0708_02805 PF02838 Glycosyl hydrolase family 20, domain 2 C0708_02810 PF00749 tRNA synthetases class I (E and Q), catalytic domain C0708_02810 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain C0708_02815 PF01475 Ferric uptake regulator family C0708_02825 PF00258 Flavodoxin C0708_02830 PF01402 Ribbon-helix-helix protein, copG family C0708_02840 PF12697 Alpha/beta hydrolase family C0708_02845 PF17206 SeqA protein N-terminal domain C0708_02845 PF03925 SeqA protein C-terminal domain C0708_02850 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C0708_02850 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C0708_02850 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C0708_02850 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C0708_02860 PF01047 MarR family C0708_02865 PF13406 Transglycosylase SLT domain C0708_02870 PF01066 CDP-alcohol phosphatidyltransferase C0708_02895 PF02627 Carboxymuconolactone decarboxylase family C0708_02920 PF04357 TamB, inner membrane protein subunit of TAM complex C0708_02935 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein C0708_02945 PF01464 Transglycosylase SLT domain C0708_02945 PF14718 Soluble lytic murein transglycosylase L domain C0708_02950 PF00356 Bacterial regulatory proteins, lacI family C0708_02960 PF03061 Thioesterase superfamily C0708_02970 PF03372 Endonuclease/Exonuclease/phosphatase family C0708_02975 PF01476 LysM domain C0708_02975 PF01464 Transglycosylase SLT domain C0708_02980 PF00753 Metallo-beta-lactamase superfamily C0708_02980 PF16123 Hydroxyacylglutathione hydrolase C-terminus C0708_02985 PF08241 Methyltransferase domain C0708_02990 PF00075 RNase H C0708_03030 PF00816 H-NS histone family C0708_03045 PF09722 Protein of unknown function (DUF2384) C0708_03050 PF08007 Cupin superfamily protein C0708_03055 PF05711 Macrocin-O-methyltransferase (TylF) C0708_03085 PF01695 IstB-like ATP binding protein C0708_03090 PF00665 Integrase core domain C0708_03100 PF12462 DNA helicase IV / RNA helicase N terminal C0708_03100 PF00580 UvrD/REP helicase N-terminal domain C0708_03100 PF13361 UvrD-like helicase C-terminal domain C0708_03105 PF02899 Phage integrase, N-terminal SAM-like domain C0708_03105 PF00589 Phage integrase family C0708_03110 PF00929 Exonuclease C0708_03120 PF11849 Domain of unknown function (DUF3369) C0708_03125 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C0708_03125 PF09317 Domain of unknown function (DUF1974) C0708_03125 PF02770 Acyl-CoA dehydrogenase, middle domain C0708_03125 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C0708_03130 PF13580 SIS domain C0708_03135 PF13230 Glutamine amidotransferases class-II C0708_03145 PF01933 Uncharacterised protein family UPF0052 C0708_03155 PF09456 RcsC Alpha-Beta-Loop (ABL) C0708_03155 PF00512 His Kinase A (phospho-acceptor) domain C0708_03155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C0708_03155 PF00072 Response regulator receiver domain C0708_03170 PF00072 Response regulator receiver domain C0708_03170 PF00196 Bacterial regulatory proteins, luxR family C0708_03175 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term C0708_03175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C0708_03175 PF00672 HAMP domain C0708_03175 PF07730 Histidine kinase C0708_03180 PF06463 Molybdenum Cofactor Synthesis C C0708_03180 PF04055 Radical SAM superfamily C0708_03185 PF12800 4Fe-4S binding domain C0708_03185 PF00037 4Fe-4S binding domain C0708_03185 PF13187 4Fe-4S dicluster domain C0708_03195 PF01568 Molydopterin dinucleotide binding domain C0708_03195 PF10518 TAT (twin-arginine translocation) pathway signal sequence C0708_03195 PF00384 Molybdopterin oxidoreductase C0708_03195 PF04879 Molybdopterin oxidoreductase Fe4S4 domain C0708_03200 PF12800 4Fe-4S binding domain C0708_03200 PF12838 4Fe-4S dicluster domain C0708_03205 PF13237 4Fe-4S dicluster domain C0708_03205 PF12801 4Fe-4S binding domain C0708_03210 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) C0708_03215 PF03264 NapC/NirT cytochrome c family, N-terminal region C0708_03220 PF00994 Probable molybdopterin binding domain C0708_03225 PF01967 MoaC family C0708_03235 PF02391 MoaE protein C0708_03245 PF00528 Binding-protein-dependent transport system inner membrane component C0708_03255 PF12697 Alpha/beta hydrolase family C0708_03260 PF00899 ThiF family C0708_03270 PF01227 GTP cyclohydrolase I C0708_03275 PF17200 Single Cache domain 2 C0708_03275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C0708_03275 PF00672 HAMP domain C0708_03280 PF01268 Formate--tetrahydrofolate ligase C0708_03290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_03290 PF03466 LysR substrate binding domain C0708_03295 PF04264 YceI-like domain C0708_03305 PF05221 S-adenosyl-L-homocysteine hydrolase C0708_03305 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain C0708_03320 PF01546 Peptidase family M20/M25/M40 C0708_03320 PF07687 Peptidase dimerisation domain C0708_03350 PF00300 Histidine phosphatase superfamily (branch 1) C0708_03375 PF01385 Probable transposase C0708_03375 PF07282 Putative transposase DNA-binding domain C0708_03375 PF12323 Helix-turn-helix domain C0708_03385 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain C0708_03385 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase C0708_03390 PF01479 S4 domain C0708_03390 PF00849 RNA pseudouridylate synthase C0708_03405 PF03466 LysR substrate binding domain C0708_03405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_03425 PF04391 Protein of unknown function (DUF533) C0708_03435 PF00155 Aminotransferase class I and II C0708_03435 PF00392 Bacterial regulatory proteins, gntR family C0708_03440 PF01654 Cytochrome bd terminal oxidase subunit I C0708_03445 PF02322 Cytochrome bd terminal oxidase subunit II C0708_03455 PF07690 Major Facilitator Superfamily C0708_03460 PF00248 Aldo/keto reductase family C0708_03480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_03480 PF03466 LysR substrate binding domain C0708_03485 PF00370 FGGY family of carbohydrate kinases, N-terminal domain C0708_03485 PF02782 FGGY family of carbohydrate kinases, C-terminal domain C0708_03490 PF00230 Major intrinsic protein C0708_03495 PF07690 Major Facilitator Superfamily C0708_03500 PF00455 DeoR C terminal sensor domain C0708_03500 PF08220 DeoR-like helix-turn-helix domain C0708_03505 PF16901 C-terminal domain of alpha-glycerophosphate oxidase C0708_03505 PF01266 FAD dependent oxidoreductase C0708_03515 PF03009 Glycerophosphoryl diester phosphodiesterase family C0708_03520 PF00793 DAHP synthetase I family C0708_03525 PF01817 Chorismate mutase type II C0708_03525 PF02153 Prephenate dehydrogenase C0708_03530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_03530 PF03466 LysR substrate binding domain C0708_03535 PF04219 Protein of unknown function, DUF C0708_03540 PF03974 Ecotin C0708_03565 PF07715 TonB-dependent Receptor Plug Domain C0708_03565 PF00593 TonB dependent receptor C0708_03570 PF11893 Domain of unknown function (DUF3413) C0708_03570 PF00884 Sulfatase C0708_03575 PF07208 Protein of unknown function (DUF1414) C0708_03585 PF01547 Bacterial extracellular solute-binding protein C0708_03590 PF00528 Binding-protein-dependent transport system inner membrane component C0708_03590 PF14785 Maltose transport system permease protein MalF P2 domain C0708_03595 PF00528 Binding-protein-dependent transport system inner membrane component C0708_03600 PF00005 ABC transporter C0708_03600 PF08402 TOBE domain C0708_03605 PF03976 Polyphosphate kinase 2 (PPK2) C0708_03610 PF00561 alpha/beta hydrolase fold C0708_03620 PF01594 AI-2E family transporter C0708_03625 PF01206 Sulfurtransferase TusA C0708_03630 PF01435 Peptidase family M48 C0708_03630 PF13181 Tetratricopeptide repeat C0708_03640 PF03960 ArsC family C0708_03655 PF04336 Acyl carrier protein phosphodiesterase C0708_03670 PF01979 Amidohydrolase family C0708_03675 PF03956 Lysine exporter LysO C0708_03680 PF00005 ABC transporter C0708_03685 PF00497 Bacterial extracellular solute-binding proteins, family 3 C0708_03690 PF00528 Binding-protein-dependent transport system inner membrane component C0708_03695 PF00528 Binding-protein-dependent transport system inner membrane component C0708_03705 PF04055 Radical SAM superfamily C0708_03715 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C0708_03715 PF07992 Pyridine nucleotide-disulphide oxidoreductase C0708_03725 PF00912 Transglycosylase C0708_03725 PF00905 Penicillin binding protein transpeptidase domain C0708_03725 PF06832 Penicillin-Binding Protein C-terminus Family C0708_03735 PF02926 THUMP domain C0708_03735 PF02568 Thiamine biosynthesis protein (ThiI) C0708_03750 PF07196 Flagellin hook IN motif C0708_03750 PF00669 Bacterial flagellin N-terminal helical region C0708_03750 PF00700 Bacterial flagellin C-terminal helical region C0708_03755 PF00700 Bacterial flagellin C-terminal helical region C0708_03755 PF00669 Bacterial flagellin N-terminal helical region C0708_03765 PF02465 Flagellar hook-associated protein 2 N-terminus C0708_03765 PF07195 Flagellar hook-associated protein 2 C-terminus C0708_03765 PF07196 Flagellin hook IN motif C0708_03770 PF02561 Flagellar protein FliS C0708_03805 PF16254 Domain of unknown function (DUF4910) C0708_03805 PF16221 winged helix-turn-helix C0708_03805 PF09940 Domain of unknown function (DUF2172) C0708_03820 PF03102 NeuB family C0708_03820 PF08666 SAF domain C0708_03830 PF02348 Cytidylyltransferase C0708_03850 PF00501 AMP-binding enzyme C0708_03850 PF13193 AMP-binding enzyme C-terminal domain C0708_03865 PF00535 Glycosyl transferase family 2 C0708_03875 PF03275 UDP-galactopyranose mutase C0708_03885 PF13439 Glycosyltransferase Family 4 C0708_03885 PF00534 Glycosyl transferases group 1 C0708_03910 PF13439 Glycosyltransferase Family 4 C0708_03910 PF00534 Glycosyl transferases group 1 C0708_03915 PF00534 Glycosyl transferases group 1 C0708_03915 PF13439 Glycosyltransferase Family 4 C0708_03930 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain C0708_03930 PF00391 PEP-utilising enzyme, mobile domain C0708_03935 PF02885 Glycosyl transferase family, helical bundle domain C0708_03935 PF00117 Glutamine amidotransferase class-I C0708_03935 PF00591 Glycosyl transferase family, a/b domain C0708_03940 PF00483 Nucleotidyl transferase C0708_03945 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family C0708_03950 PF02719 Polysaccharide biosynthesis protein C0708_03955 PF01497 Periplasmic binding protein C0708_03965 PF01048 Phosphorylase superfamily C0708_03970 PF02535 ZIP Zinc transporter C0708_04005 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C0708_04010 PF00730 HhH-GPD superfamily base excision DNA repair protein C0708_04010 PF10576 Iron-sulfur binding domain of endonuclease III C0708_04010 PF00633 Helix-hairpin-helix motif C0708_04020 PF04205 FMN-binding domain C0708_04030 PF13375 RnfC Barrel sandwich hybrid domain C0708_04030 PF10531 SLBB domain C0708_04030 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit C0708_04030 PF12838 4Fe-4S dicluster domain C0708_04035 PF04060 Putative Fe-S cluster C0708_04040 PF02508 Rnf-Nqr subunit, membrane protein C0708_04050 PF13808 DDE_Tnp_1-associated C0708_04050 PF01609 Transposase DDE domain C0708_04055 PF01609 Transposase DDE domain C0708_04055 PF05598 Transposase domain (DUF772) C0708_04105 PF03606 C4-dicarboxylate anaerobic carrier C0708_04110 PF00155 Aminotransferase class I and II C0708_04120 PF00462 Glutaredoxin C0708_04130 PF04851 Type III restriction enzyme, res subunit C0708_04130 PF00271 Helicase conserved C-terminal domain C0708_04135 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C0708_04135 PF00529 HlyD membrane-fusion protein of T1SS C0708_04140 PF11742 Protein of unknown function (DUF3302) C0708_04155 PF12323 Helix-turn-helix domain C0708_04155 PF01385 Probable transposase C0708_04155 PF07282 Putative transposase DNA-binding domain C0708_04165 PF02554 Carbon starvation protein CstA C0708_04170 PF04397 LytTr DNA-binding domain C0708_04170 PF00072 Response regulator receiver domain C0708_04175 PF06580 Histidine kinase C0708_04175 PF07694 5TMR of 5TMR-LYT C0708_04185 PF00465 Iron-containing alcohol dehydrogenase C0708_04185 PF00171 Aldehyde dehydrogenase family C0708_04190 PF01914 MarC family integral membrane protein C0708_04195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C0708_04200 PF00528 Binding-protein-dependent transport system inner membrane component C0708_04205 PF12911 N-terminal TM domain of oligopeptide transport permease C C0708_04205 PF00528 Binding-protein-dependent transport system inner membrane component C0708_04210 PF00005 ABC transporter C0708_04210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C0708_04215 PF00005 ABC transporter C0708_04215 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C0708_04220 PF03741 Integral membrane protein TerC family C0708_04225 PF00842 Alanine racemase, C-terminal domain C0708_04225 PF01168 Alanine racemase, N-terminal domain C0708_04235 PF00375 Sodium:dicarboxylate symporter family C0708_04255 PF01979 Amidohydrolase family C0708_04265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C0708_04265 PF00672 HAMP domain C0708_04270 PF01230 HIT domain C0708_04305 PF07549 SecD/SecF GG Motif C0708_04305 PF13721 SecD export protein N-terminal TM region C0708_04305 PF02355 Protein export membrane protein C0708_04310 PF02355 Protein export membrane protein C0708_04310 PF07549 SecD/SecF GG Motif C0708_04315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C0708_04315 PF08447 PAS fold C0708_04315 PF13426 PAS domain C0708_04340 PF05728 Uncharacterised protein family (UPF0227) C0708_04345 PF07992 Pyridine nucleotide-disulphide oxidoreductase C0708_04350 PF01906 Putative heavy-metal-binding C0708_04365 PF00696 Amino acid kinase family C0708_04365 PF01842 ACT domain C0708_04370 PF00696 Amino acid kinase family C0708_04370 PF00583 Acetyltransferase (GNAT) family C0708_04400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_04400 PF03466 LysR substrate binding domain C0708_04405 PF02652 L-lactate permease C0708_04410 PF02754 Cysteine-rich domain C0708_04420 PF02589 LUD domain C0708_04425 PF02913 FAD linked oxidases, C-terminal domain C0708_04425 PF01565 FAD binding domain C0708_04455 PF00005 ABC transporter C0708_04465 PF03600 Citrate transporter C0708_04500 PF03239 Iron permease FTR1 family C0708_04530 PF14403 Circularly permuted ATP-grasp type 2 C0708_04530 PF04168 A predicted alpha-helical domain with a conserved ER motif. C0708_04540 PF07282 Putative transposase DNA-binding domain C0708_04540 PF01385 Probable transposase C0708_04540 PF12323 Helix-turn-helix domain C0708_04575 PF02371 Transposase IS116/IS110/IS902 family C0708_04575 PF01548 Transposase C0708_04595 PF13662 Toprim domain C0708_04595 PF02132 RecR protein C0708_04600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C0708_04600 PF00183 Hsp90 protein C0708_04605 PF05191 Adenylate kinase, active site lid C0708_04610 PF00762 Ferrochelatase C0708_04615 PF01124 MAPEG family C0708_04620 PF00294 pfkB family carbohydrate kinase C0708_04640 PF03707 Bacterial signalling protein N terminal repeat C0708_04640 PF00990 Diguanylate cyclase, GGDEF domain C0708_04640 PF00563 EAL domain C0708_04645 PF00483 Nucleotidyl transferase C0708_04655 PF07273 Protein of unknown function (DUF1439) C0708_04660 PF00425 chorismate binding enzyme C0708_04670 PF13737 Transposase DDE domain C0708_04680 PF00550 Phosphopantetheine attachment site C0708_04680 PF00857 Isochorismatase family C0708_04695 PF07993 Male sterility protein C0708_04695 PF00550 Phosphopantetheine attachment site C0708_04695 PF13193 AMP-binding enzyme C-terminal domain C0708_04695 PF00501 AMP-binding enzyme C0708_04695 PF00668 Condensation domain C0708_04705 PF01497 Periplasmic binding protein C0708_04710 PF17837 4'-phosphopantetheinyl transferase N-terminal domain C0708_04710 PF01648 4'-phosphopantetheinyl transferase superfamily C0708_04725 PF01032 FecCD transport family C0708_04730 PF00593 TonB dependent receptor C0708_04730 PF07715 TonB-dependent Receptor Plug Domain C0708_04745 PF11143 Protein of unknown function (DUF2919) C0708_04750 PF01544 CorA-like Mg2+ transporter protein C0708_04765 PF01012 Electron transfer flavoprotein domain C0708_04765 PF00766 Electron transfer flavoprotein FAD-binding domain C0708_04770 PF00266 Aminotransferase class-V C0708_04775 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) C0708_04780 PF00793 DAHP synthetase I family C0708_04785 PF13006 Insertion element 4 transposase N-terminal C0708_04785 PF01609 Transposase DDE domain C0708_04790 PF03741 Integral membrane protein TerC family C0708_04800 PF08891 YfcL protein C0708_04805 PF00501 AMP-binding enzyme C0708_04815 PF04172 LrgB-like family C0708_04820 PF03788 LrgA family C0708_04830 PF13006 Insertion element 4 transposase N-terminal C0708_04830 PF01609 Transposase DDE domain C0708_04840 PF08411 Exonuclease C-terminal C0708_04840 PF00929 Exonuclease C0708_04895 PF13808 DDE_Tnp_1-associated C0708_04895 PF01609 Transposase DDE domain C0708_04905 PF00288 GHMP kinases N terminal domain C0708_04905 PF08544 GHMP kinases C terminal C0708_04905 PF10509 Galactokinase galactose-binding signature C0708_04910 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain C0708_04910 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain C0708_04915 PF16363 GDP-mannose 4,6 dehydratase C0708_04925 PF02264 LamB porin C0708_04930 PF07745 Glycosyl hydrolase family 53 C0708_04940 PF00672 HAMP domain C0708_04940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C0708_04955 PF01610 Transposase C0708_04955 PF13542 Helix-turn-helix domain of transposase family ISL3 C0708_04955 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 C0708_04965 PF00005 ABC transporter C0708_04965 PF17912 MalK OB fold domain C0708_04970 PF13416 Bacterial extracellular solute-binding protein C0708_04975 PF00528 Binding-protein-dependent transport system inner membrane component C0708_04980 PF00528 Binding-protein-dependent transport system inner membrane component C0708_04985 PF07745 Glycosyl hydrolase family 53 C0708_04990 PF02449 Beta-galactosidase C0708_04990 PF08533 Beta-galactosidase C-terminal domain C0708_04990 PF08532 Beta-galactosidase trimerisation domain C0708_04995 PF00367 phosphotransferase system, EIIB C0708_04995 PF02378 Phosphotransferase system, EIIC C0708_05000 PF07745 Glycosyl hydrolase family 53 C0708_05005 PF02887 Pyruvate kinase, alpha/beta domain C0708_05005 PF00224 Pyruvate kinase, barrel domain C0708_05045 PF00497 Bacterial extracellular solute-binding proteins, family 3 C0708_05050 PF00795 Carbon-nitrogen hydrolase C0708_05060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_05060 PF03466 LysR substrate binding domain C0708_05065 PF02610 L-arabinose isomerase C0708_05065 PF11762 L-arabinose isomerase C-terminal domain C0708_05070 PF00596 Class II Aldolase and Adducin N-terminal domain C0708_05075 PF02782 FGGY family of carbohydrate kinases, C-terminal domain C0708_05080 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family C0708_05085 PF00005 ABC transporter C0708_05090 PF02653 Branched-chain amino acid transport system / permease component C0708_05095 PF02311 AraC-like ligand binding domain C0708_05095 PF12833 Helix-turn-helix domain C0708_05100 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 C0708_05100 PF13542 Helix-turn-helix domain of transposase family ISL3 C0708_05100 PF01610 Transposase C0708_05105 PF00444 Ribosomal protein L36 C0708_05110 PF01197 Ribosomal protein L31 C0708_05125 PF01863 Protein of unknown function DUF45 C0708_05140 PF03606 C4-dicarboxylate anaerobic carrier C0708_05155 PF00109 Beta-ketoacyl synthase, N-terminal domain C0708_05155 PF02801 Beta-ketoacyl synthase, C-terminal domain C0708_05170 PF00285 Citrate synthase, C-terminal domain C0708_05175 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit C0708_05180 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit C0708_05190 PF13085 2Fe-2S iron-sulfur cluster binding domain C0708_05195 PF16078 2-oxoglutarate dehydrogenase N-terminus C0708_05195 PF00676 Dehydrogenase E1 component C0708_05195 PF02779 Transketolase, pyrimidine binding domain C0708_05195 PF16870 2-oxoglutarate dehydrogenase C-terminal C0708_05205 PF08442 ATP-grasp domain C0708_05205 PF00549 CoA-ligase C0708_05210 PF02629 CoA binding domain C0708_05210 PF00549 CoA-ligase C0708_05220 PF03692 Putative zinc- or iron-chelating domain C0708_05225 PF02901 Pyruvate formate lyase-like C0708_05225 PF01228 Glycine radical C0708_05230 PF01226 Formate/nitrite transporter C0708_05235 PF18381 YcaO cyclodehydratase C-terminal domain C0708_05235 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding C0708_05245 PF00893 Small Multidrug Resistance protein C0708_05250 PF01118 Semialdehyde dehydrogenase, NAD binding domain C0708_05250 PF02774 Semialdehyde dehydrogenase, dimerisation domain C0708_05255 PF00313 'Cold-shock' DNA-binding domain C0708_05260 PF02617 ATP-dependent Clp protease adaptor protein ClpS C0708_05265 PF10431 C-terminal, D2-small domain, of ClpB protein C0708_05265 PF02861 Clp amino terminal domain, pathogenicity island component C0708_05265 PF17871 AAA lid domain C0708_05265 PF00004 ATPase family associated with various cellular activities (AAA) C0708_05265 PF07724 AAA domain (Cdc48 subfamily) C0708_05270 PF01176 Translation initiation factor 1A / IF-1 C0708_05275 PF04377 Arginine-tRNA-protein transferase, C terminus C0708_05275 PF04376 Arginine-tRNA-protein transferase, N terminus C0708_05280 PF03588 Leucyl/phenylalanyl-tRNA protein transferase C0708_05285 PF05433 Glycine zipper 2TM domain C0708_05290 PF05230 MASE2 domain C0708_05290 PF00990 Diguanylate cyclase, GGDEF domain C0708_05300 PF07992 Pyridine nucleotide-disulphide oxidoreductase C0708_05305 PF05222 Alanine dehydrogenase/PNT, N-terminal domain C0708_05305 PF01262 Alanine dehydrogenase/PNT, C-terminal domain C0708_05310 PF01037 Lrp/AsnC ligand binding domain C0708_05315 PF17854 FtsK alpha domain C0708_05315 PF01580 FtsK/SpoIIIE family C0708_05315 PF09397 Ftsk gamma domain C0708_05315 PF13491 4TM region of DNA translocase FtsK/SpoIIIE C0708_05325 PF00004 ATPase family associated with various cellular activities (AAA) C0708_05325 PF16193 AAA C-terminal domain C0708_05325 PF12002 MgsA AAA+ ATPase C terminal C0708_05330 PF02403 Seryl-tRNA synthetase N-terminal domain C0708_05330 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C0708_05335 PF02674 Colicin V production protein C0708_05340 PF00156 Phosphoribosyl transferase domain C0708_05350 PF00367 phosphotransferase system, EIIB C0708_05350 PF02378 Phosphotransferase system, EIIC C0708_05365 PF12323 Helix-turn-helix domain C0708_05365 PF01385 Probable transposase C0708_05365 PF07282 Putative transposase DNA-binding domain C0708_05375 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) C0708_05380 PF00005 ABC transporter C0708_05390 PF00528 Binding-protein-dependent transport system inner membrane component C0708_05390 PF12911 N-terminal TM domain of oligopeptide transport permease C C0708_05395 PF00528 Binding-protein-dependent transport system inner membrane component C0708_05400 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C0708_05405 PF02954 Bacterial regulatory protein, Fis family C0708_05405 PF00158 Sigma-54 interaction domain C0708_05410 PF04012 PspA/IM30 family C0708_05415 PF06667 Phage shock protein B C0708_05425 PF04317 YcjX-like family, DUF463 C0708_05430 PF05128 Domain of unknown function (DUF697) C0708_05435 PF00351 Biopterin-dependent aromatic amino acid hydroxylase C0708_05440 PF01329 Pterin 4 alpha carbinolamine dehydratase C0708_05445 PF00158 Sigma-54 interaction domain C0708_05445 PF18024 Helix-turn-helix domain C0708_05450 PF13689 YfiR/HmsC-like C0708_05455 PF17152 Periplasmic sensor domain C0708_05455 PF00990 Diguanylate cyclase, GGDEF domain C0708_05460 PF00691 OmpA family C0708_05470 PF02601 Exonuclease VII, large subunit C0708_05470 PF13742 OB-fold nucleic acid binding domain C0708_05490 PF12323 Helix-turn-helix domain C0708_05490 PF01385 Probable transposase C0708_05490 PF07282 Putative transposase DNA-binding domain C0708_05505 PF00478 IMP dehydrogenase / GMP reductase domain C0708_05505 PF00571 CBS domain C0708_05510 PF02540 NAD synthase C0708_05510 PF00958 GMP synthase C terminal domain C0708_05510 PF00117 Glutamine amidotransferase class-I C0708_05520 PF00589 Phage integrase family C0708_05520 PF13356 Arm DNA-binding domain C0708_05555 PF17273 Family of unknown function (DUF5338) C0708_05600 PF05052 MerE protein C0708_05605 PF13411 MerR HTH family regulatory protein C0708_05610 PF03243 Alkylmercury lyase C0708_05610 PF12324 Helix-turn-helix domain of alkylmercury lyase C0708_05615 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C0708_05615 PF00403 Heavy-metal-associated domain C0708_05615 PF07992 Pyridine nucleotide-disulphide oxidoreductase C0708_05620 PF00403 Heavy-metal-associated domain C0708_05625 PF02411 MerT mercuric transport protein C0708_05630 PF00376 MerR family regulatory protein C0708_05630 PF09278 MerR, DNA binding C0708_05645 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase C0708_05650 PF01636 Phosphotransferase enzyme family C0708_05655 PF00239 Resolvase, N terminal domain C0708_05655 PF02796 Helix-turn-helix domain of resolvase C0708_05660 PF13700 Domain of unknown function (DUF4158) C0708_05660 PF01526 Tn3 transposase DDE domain C0708_05675 PF07690 Major Facilitator Superfamily C0708_05680 PF03466 LysR substrate binding domain C0708_05680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_05700 PF00809 Pterin binding enzyme C0708_05745 PF02909 Tetracyclin repressor-like, C-terminal domain C0708_05745 PF00440 Bacterial regulatory proteins, tetR family C0708_05750 PF07690 Major Facilitator Superfamily C0708_05765 PF00809 Pterin binding enzyme C0708_05780 PF00872 Transposase, Mutator family C0708_05805 PF00665 Integrase core domain C0708_05810 PF01695 IstB-like ATP binding protein C0708_05835 PF01047 MarR family C0708_05845 PF05724 Thiopurine S-methyltransferase (TPMT) C0708_05850 PF00675 Insulinase (Peptidase family M16) C0708_05850 PF05193 Peptidase M16 inactive domain C0708_05850 PF16187 Middle or third domain of peptidase_M16 C0708_05855 PF00300 Histidine phosphatase superfamily (branch 1) C0708_05865 PF00892 EamA-like transporter family C0708_05870 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C0708_05875 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain C0708_05880 PF17757 UvrB interaction domain C0708_05880 PF03461 TRCF domain C0708_05880 PF00271 Helicase conserved C-terminal domain C0708_05880 PF02559 CarD-like/TRCF domain C0708_05880 PF00270 DEAD/DEAH box helicase C0708_05890 PF02687 FtsX-like permease family C0708_05890 PF12704 MacB-like periplasmic core domain C0708_05895 PF00005 ABC transporter C0708_05900 PF12704 MacB-like periplasmic core domain C0708_05900 PF02687 FtsX-like permease family C0708_05920 PF05697 Bacterial trigger factor protein (TF) C0708_05920 PF05698 Bacterial trigger factor protein (TF) C-terminus C0708_05920 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C0708_05925 PF00574 Clp protease C0708_05930 PF06689 ClpX C4-type zinc finger C0708_05930 PF07724 AAA domain (Cdc48 subfamily) C0708_05930 PF10431 C-terminal, D2-small domain, of ClpB protein C0708_05935 PF02190 ATP-dependent protease La (LON) substrate-binding domain C0708_05935 PF05362 Lon protease (S16) C-terminal proteolytic domain C0708_05935 PF00004 ATPase family associated with various cellular activities (AAA) C0708_05940 PF00216 Bacterial DNA-binding protein C0708_05945 PF13145 PPIC-type PPIASE domain C0708_05950 PF12848 ABC transporter C0708_05950 PF00005 ABC transporter C0708_05955 PF00474 Sodium:solute symporter family C0708_05960 PF04341 Protein of unknown function, DUF485 C0708_05975 PF00378 Enoyl-CoA hydratase/isomerase C0708_05980 PF01235 Sodium:alanine symporter family C0708_05990 PF06167 Glucose-regulated metallo-peptidase M90 C0708_05995 PF01184 GPR1/FUN34/yaaH family C0708_06005 PF09278 MerR, DNA binding C0708_06005 PF00376 MerR family regulatory protein C0708_06010 PF00682 HMGL-like C0708_06015 PF00289 Biotin carboxylase, N-terminal domain C0708_06015 PF00364 Biotin-requiring enzyme C0708_06015 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C0708_06015 PF02785 Biotin carboxylase C-terminal domain C0708_06020 PF00378 Enoyl-CoA hydratase/isomerase C0708_06025 PF01039 Carboxyl transferase domain C0708_06030 PF02770 Acyl-CoA dehydrogenase, middle domain C0708_06030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C0708_06030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C0708_06035 PF00171 Aldehyde dehydrogenase family C0708_06045 PF00378 Enoyl-CoA hydratase/isomerase C0708_06050 PF00378 Enoyl-CoA hydratase/isomerase C0708_06055 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C0708_06055 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C0708_06070 PF01925 Sulfite exporter TauE/SafE C0708_06100 PF02384 N-6 DNA Methylase C0708_06115 PF13358 DDE superfamily endonuclease C0708_06115 PF13592 Winged helix-turn helix C0708_06130 PF00665 Integrase core domain C0708_06135 PF01695 IstB-like ATP binding protein C0708_06150 PF04002 RadC-like JAB domain C0708_06160 PF02796 Helix-turn-helix domain of resolvase C0708_06160 PF00239 Resolvase, N terminal domain C0708_06190 PF03466 LysR substrate binding domain C0708_06190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_06200 PF01042 Endoribonuclease L-PSP C0708_06210 PF01546 Peptidase family M20/M25/M40 C0708_06210 PF07687 Peptidase dimerisation domain C0708_06215 PF00202 Aminotransferase class-III C0708_06230 PF13185 GAF domain C0708_06230 PF00196 Bacterial regulatory proteins, luxR family C0708_06235 PF00512 His Kinase A (phospho-acceptor) domain C0708_06235 PF00072 Response regulator receiver domain C0708_06235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C0708_06235 PF09308 LuxQ, periplasmic C0708_06245 PF00005 ABC transporter C0708_06260 PF02634 FdhD/NarQ family C0708_06270 PF00990 Diguanylate cyclase, GGDEF domain C0708_06270 PF00072 Response regulator receiver domain C0708_06280 PF00232 Glycosyl hydrolase family 1 C0708_06290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_06290 PF03466 LysR substrate binding domain C0708_06305 PF01261 Xylose isomerase-like TIM barrel C0708_06310 PF01408 Oxidoreductase family, NAD-binding Rossmann fold C0708_06310 PF02894 Oxidoreductase family, C-terminal alpha/beta domain C0708_06315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_06315 PF03466 LysR substrate binding domain C0708_06325 PF03279 Bacterial lipid A biosynthesis acyltransferase C0708_06330 PF03279 Bacterial lipid A biosynthesis acyltransferase C0708_06340 PF02678 Pirin C0708_06340 PF05726 Pirin C-terminal cupin domain C0708_06375 PF01554 MatE C0708_06380 PF06786 Uncharacterised protein family (UPF0253) C0708_06385 PF00677 Lumazine binding domain C0708_06400 PF13419 Haloacid dehalogenase-like hydrolase C0708_06410 PF00892 EamA-like transporter family C0708_06415 PF02525 Flavodoxin-like fold C0708_06440 PF13509 S1 domain C0708_06440 PF17783 CvfB-like winged helix domain C0708_06450 PF04269 Protein of unknown function, DUF440 C0708_06465 PF04269 Protein of unknown function, DUF440 C0708_06470 PF03776 Septum formation topological specificity factor MinE C0708_06475 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain C0708_06480 PF05209 Septum formation inhibitor MinC, N-terminal domain C0708_06480 PF03775 Septum formation inhibitor MinC, C-terminal domain C0708_06485 PF05166 YcgL domain C0708_06500 PF03313 Serine dehydratase alpha chain C0708_06500 PF03315 Serine dehydratase beta chain C0708_06510 PF03313 Serine dehydratase alpha chain C0708_06510 PF03315 Serine dehydratase beta chain C0708_06515 PF06865 Pyrimidine/purine nucleoside phosphorylase C0708_06520 PF00375 Sodium:dicarboxylate symporter family C0708_06525 PF00376 MerR family regulatory protein C0708_06525 PF09278 MerR, DNA binding C0708_06530 PF02803 Thiolase, C-terminal domain C0708_06530 PF00108 Thiolase, N-terminal domain C0708_06545 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) C0708_06555 PF08281 Sigma-70, region 4 C0708_06555 PF04542 Sigma-70 region 2 C0708_06580 PF01882 Protein of unknown function DUF58 C0708_06585 PF07726 ATPase family associated with various cellular activities (AAA) C0708_06585 PF17863 AAA lid domain C0708_06590 PF00108 Thiolase, N-terminal domain C0708_06590 PF02803 Thiolase, C-terminal domain C0708_06595 PF00378 Enoyl-CoA hydratase/isomerase C0708_06595 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C0708_06595 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C0708_06605 PF07152 YaeQ protein C0708_06625 PF00005 ABC transporter C0708_06630 PF01032 FecCD transport family C0708_06645 PF05433 Glycine zipper 2TM domain C0708_06650 PF13193 AMP-binding enzyme C-terminal domain C0708_06650 PF00501 AMP-binding enzyme C0708_06655 PF13280 WYL domain C0708_06655 PF08279 HTH domain C0708_06665 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase C0708_06665 PF01502 Phosphoribosyl-AMP cyclohydrolase C0708_06670 PF00977 Histidine biosynthesis protein C0708_06685 PF00072 Response regulator receiver domain C0708_06690 PF00977 Histidine biosynthesis protein C0708_06695 PF00117 Glutamine amidotransferase class-I C0708_06700 PF08645 Polynucleotide kinase 3 phosphatase C0708_06700 PF00475 Imidazoleglycerol-phosphate dehydratase C0708_06705 PF00155 Aminotransferase class I and II C0708_06710 PF00815 Histidinol dehydrogenase C0708_06715 PF01634 ATP phosphoribosyltransferase C0708_06715 PF08029 HisG, C-terminal domain C0708_06730 PF00814 Glycoprotease family C0708_06740 PF00561 alpha/beta hydrolase fold C0708_06750 PF01612 3'-5' exonuclease C0708_06750 PF00570 HRDC domain C0708_06765 PF02805 Metal binding domain of Ada C0708_06765 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain C0708_06765 PF12833 Helix-turn-helix domain C0708_06765 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain C0708_06775 PF04304 Protein of unknown function (DUF454) C0708_06780 PF00156 Phosphoribosyl transferase domain C0708_06785 PF12169 DNA polymerase III subunits gamma and tau domain III C0708_06785 PF12170 DNA polymerase III tau subunit V interacting with alpha C0708_06785 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding C0708_06790 PF02575 YbaB/EbfC DNA-binding family C0708_06795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_06795 PF03466 LysR substrate binding domain C0708_06810 PF00196 Bacterial regulatory proteins, luxR family C0708_06810 PF00072 Response regulator receiver domain C0708_06815 PF02272 DHHA1 domain C0708_06815 PF01368 DHH family C0708_06815 PF00571 CBS domain C0708_06815 PF01743 Poly A polymerase head domain C0708_06820 PF00270 DEAD/DEAH box helicase C0708_06820 PF11898 Domain of unknown function (DUF3418) C0708_06820 PF04408 Helicase associated domain (HA2) C0708_06820 PF00271 Helicase conserved C-terminal domain C0708_06820 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold C0708_06830 PF01386 Ribosomal L25p family C0708_06845 PF12323 Helix-turn-helix domain C0708_06845 PF01385 Probable transposase C0708_06845 PF07282 Putative transposase DNA-binding domain C0708_06860 PF00753 Metallo-beta-lactamase superfamily C0708_06870 PF00586 AIR synthase related protein, N-terminal domain C0708_06870 PF02769 AIR synthase related protein, C-terminal domain C0708_06885 PF17785 PUA-like domain C0708_06885 PF10672 S-adenosylmethionine-dependent methyltransferase C0708_06895 PF00708 Acylphosphatase C0708_06905 PF01588 Putative tRNA binding domain C0708_06905 PF09334 tRNA synthetases class I (M) C0708_06905 PF08264 Anticodon-binding domain of tRNA C0708_06915 PF00485 Phosphoribulokinase / Uridine kinase family C0708_06920 PF00692 dUTPase C0708_06925 PF01384 Phosphate transporter family C0708_06930 PF10150 Ribonuclease E/G family C0708_06930 PF00575 S1 RNA binding domain C0708_06930 PF12111 Polyribonucleotide phosphorylase C terminal C0708_06935 PF01479 S4 domain C0708_06935 PF00849 RNA pseudouridylate synthase C0708_06940 PF02545 Maf-like protein C0708_06950 PF02620 Large ribosomal RNA subunit accumulation protein YceD C0708_06955 PF01783 Ribosomal L32p protein family C0708_06960 PF02504 Fatty acid synthesis protein C0708_06965 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal C0708_06965 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C0708_06970 PF00698 Acyl transferase domain C0708_06980 PF00550 Phosphopantetheine attachment site C0708_06985 PF02801 Beta-ketoacyl synthase, C-terminal domain C0708_06985 PF00109 Beta-ketoacyl synthase, N-terminal domain C0708_06990 PF01063 Amino-transferase class IV C0708_06995 PF02618 YceG-like family C0708_07000 PF02223 Thymidylate kinase C0708_07005 PF09115 DNA polymerase III, delta subunit, C terminal C0708_07010 PF01026 TatD related DNase C0708_07015 PF00589 Phage integrase family C0708_07025 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF C0708_07025 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF C0708_07025 PF01189 16S rRNA methyltransferase RsmB/F C0708_07035 PF04403 Paraquat-inducible protein A C0708_07050 PF07130 YebG protein C0708_07060 PF05362 Lon protease (S16) C-terminal proteolytic domain C0708_07060 PF13654 AAA domain C0708_07065 PF07977 FabA-like domain C0708_07070 PF04957 Ribosome modulation factor C0708_07090 PF01170 Putative RNA methylase family UPF0020 C0708_07090 PF02926 THUMP domain C0708_07090 PF10672 S-adenosylmethionine-dependent methyltransferase C0708_07095 PF07126 Cell-division protein ZapC C0708_07100 PF01180 Dihydroorotate dehydrogenase C0708_07105 PF05088 Bacterial NAD-glutamate dehydrogenase C0708_07115 PF01433 Peptidase family M1 domain C0708_07115 PF11940 Domain of unknown function (DUF3458) Ig-like fold C0708_07115 PF17432 Domain of unknown function (DUF3458_C) ARM repeats C0708_07120 PF17804 Tail specific protease N-terminal domain C0708_07120 PF11818 C-terminal domain of tail specific protease (DUF3340) C0708_07120 PF00595 PDZ domain C0708_07120 PF03572 Peptidase family S41 C0708_07125 PF17516 ProQ C-terminal domain C0708_07125 PF04352 ProQ/FINO family C0708_07130 PF13185 GAF domain C0708_07155 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP C0708_07155 PF13442 Cytochrome C oxidase, cbb3-type, subunit III C0708_07165 PF00403 Heavy-metal-associated domain C0708_07180 PF00027 Cyclic nucleotide-binding domain C0708_07180 PF13545 Crp-like helix-turn-helix domain C0708_07185 PF00582 Universal stress protein family C0708_07190 PF01171 PP-loop family C0708_07205 PF07282 Putative transposase DNA-binding domain C0708_07205 PF01385 Probable transposase C0708_07205 PF12323 Helix-turn-helix domain C0708_07215 PF02798 Glutathione S-transferase, N-terminal domain C0708_07215 PF00043 Glutathione S-transferase, C-terminal domain C0708_07220 PF05025 RbsD / FucU transport protein family C0708_07225 PF00005 ABC transporter C0708_07230 PF02653 Branched-chain amino acid transport system / permease component C0708_07235 PF13407 Periplasmic binding protein domain C0708_07240 PF00294 pfkB family carbohydrate kinase C0708_07245 PF00356 Bacterial regulatory proteins, lacI family C0708_07255 PF01385 Probable transposase C0708_07255 PF12323 Helix-turn-helix domain C0708_07255 PF07282 Putative transposase DNA-binding domain C0708_07270 PF02146 Sir2 family C0708_07290 PF00216 Bacterial DNA-binding protein C0708_07295 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain C0708_07295 PF01588 Putative tRNA binding domain C0708_07295 PF03147 Ferredoxin-fold anticodon binding domain C0708_07295 PF03484 tRNA synthetase B5 domain C0708_07295 PF03483 B3/4 domain C0708_07300 PF01409 tRNA synthetases class II core domain (F) C0708_07300 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain C0708_07305 PF00589 Phage integrase family C0708_07305 PF02899 Phage integrase, N-terminal SAM-like domain C0708_07320 PF00453 Ribosomal protein L20 C0708_07325 PF01632 Ribosomal protein L35 C0708_07330 PF05198 Translation initiation factor IF-3, N-terminal domain C0708_07330 PF00707 Translation initiation factor IF-3, C-terminal domain C0708_07335 PF03129 Anticodon binding domain C0708_07335 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain C0708_07335 PF02824 TGS domain C0708_07335 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C0708_07350 PF04055 Radical SAM superfamily C0708_07355 PF00521 DNA gyrase/topoisomerase IV, subunit A C0708_07355 PF03989 DNA gyrase C-terminal domain, beta-propeller C0708_07365 PF13419 Haloacid dehalogenase-like hydrolase C0708_07370 PF00317 Ribonucleotide reductase, all-alpha domain C0708_07370 PF02867 Ribonucleotide reductase, barrel domain C0708_07370 PF03477 ATP cone domain C0708_07375 PF00268 Ribonucleotide reductase, small chain C0708_07380 PF00111 2Fe-2S iron-sulfur cluster binding domain C0708_07385 PF03562 MltA specific insert domain C0708_07385 PF06725 3D domain C0708_07390 PF06945 Protein of unknown function (DUF1289) C0708_07405 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 C0708_07405 PF00381 PTS HPr component phosphorylation site C0708_07410 PF00356 Bacterial regulatory proteins, lacI family C0708_07410 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family C0708_07415 PF03222 Tryptophan/tyrosine permease family C0708_07430 PF00271 Helicase conserved C-terminal domain C0708_07430 PF00270 DEAD/DEAH box helicase C0708_07445 PF05175 Methyltransferase small domain C0708_07485 PF03831 PhnA domain C0708_07485 PF08274 PhnA Zinc-Ribbon C0708_07515 PF12323 Helix-turn-helix domain C0708_07515 PF07282 Putative transposase DNA-binding domain C0708_07515 PF01385 Probable transposase C0708_07550 PF05036 Sporulation related domain C0708_07550 PF03330 Lytic transglycolase C0708_07555 PF16330 MukB hinge domain C0708_07555 PF04310 MukB N-terminal C0708_07560 PF04288 MukE-like family C0708_07565 PF17192 MukF middle domain C0708_07565 PF17193 MukF C-terminal domain C0708_07565 PF03882 MukF winged-helix domain C0708_07575 PF02698 DUF218 domain C0708_07580 PF00121 Triosephosphate isomerase C0708_07585 PF00365 Phosphofructokinase C0708_07615 PF13419 Haloacid dehalogenase-like hydrolase C0708_07620 PF02789 Cytosol aminopeptidase family, N-terminal domain C0708_07620 PF00883 Cytosol aminopeptidase family, catalytic domain C0708_07665 PF11398 Protein of unknown function (DUF2813) C0708_07695 PF01820 D-ala D-ala ligase N-terminus C0708_07695 PF07478 D-ala D-ala ligase C-terminus C0708_07710 PF00271 Helicase conserved C-terminal domain C0708_07710 PF00270 DEAD/DEAH box helicase C0708_07715 PF13673 Acetyltransferase (GNAT) domain C0708_07725 PF02694 Uncharacterised BCR, YnfA/UPF0060 family C0708_07735 PF01928 CYTH domain C0708_07745 PF13673 Acetyltransferase (GNAT) domain C0708_07755 PF08543 Phosphomethylpyrimidine kinase C0708_07775 PF00561 alpha/beta hydrolase fold C0708_07775 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus C0708_07780 PF01575 MaoC like domain C0708_07810 PF00512 His Kinase A (phospho-acceptor) domain C0708_07810 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) C0708_07810 PF00672 HAMP domain C0708_07810 PF00072 Response regulator receiver domain C0708_07810 PF01627 Hpt domain C0708_07810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C0708_07815 PF00085 Thioredoxin C0708_07830 PF01609 Transposase DDE domain C0708_07830 PF13006 Insertion element 4 transposase N-terminal C0708_07835 PF00343 Carbohydrate phosphorylase C0708_07855 PF04715 Anthranilate synthase component I, N terminal region C0708_07855 PF00425 chorismate binding enzyme C0708_07865 PF03222 Tryptophan/tyrosine permease family C0708_07880 PF06798 PrkA serine protein kinase C-terminal domain C0708_07880 PF08298 PrkA AAA domain C0708_07885 PF04285 Protein of unknown function (DUF444) C0708_07895 PF07840 FadR C-terminal domain C0708_07895 PF00392 Bacterial regulatory proteins, gntR family C0708_07900 PF06450 Bacterial Na+/H+ antiporter B (NhaB) C0708_07905 PF02600 Disulfide bond formation protein DsbB C0708_07910 PF09335 SNARE associated Golgi protein C0708_07920 PF12344 Ultra-violet resistance protein B C0708_07920 PF02151 UvrB/uvrC motif C0708_07920 PF17757 UvrB interaction domain C0708_07920 PF00271 Helicase conserved C-terminal domain C0708_07920 PF04851 Type III restriction enzyme, res subunit C0708_07935 PF06826 Predicted Permease Membrane Region C0708_07935 PF02080 TrkA-C domain C0708_07940 PF01464 Transglycosylase SLT domain C0708_07940 PF01551 Peptidase family M23 C0708_07940 PF10145 Phage-related minor tail protein C0708_07945 PF03401 Tripartite tricarboxylate transporter family receptor C0708_07955 PF01970 Tripartite tricarboxylate transporter TctA family C0708_07960 PF00072 Response regulator receiver domain C0708_07970 PF01047 MarR family C0708_07970 PF00480 ROK family C0708_07975 PF00672 HAMP domain C0708_07975 PF17200 Single Cache domain 2 C0708_07975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C0708_07980 PF02810 SEC-C motif C0708_07985 PF01266 FAD dependent oxidoreductase C0708_07985 PF04324 BFD-like [2Fe-2S] binding domain C0708_07990 PF00890 FAD binding domain C0708_07995 PF13183 4Fe-4S dicluster domain C0708_07995 PF02754 Cysteine-rich domain C0708_08000 PF02335 Cytochrome c552 C0708_08005 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) C0708_08005 PF13435 Cytochrome c554 and c-prime C0708_08010 PF13247 4Fe-4S dicluster domain C0708_08010 PF00037 4Fe-4S binding domain C0708_08015 PF03916 Polysulphide reductase, NrfD C0708_08020 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal C0708_08020 PF01578 Cytochrome C assembly protein C0708_08025 PF08534 Redoxin C0708_08035 PF00768 D-alanyl-D-alanine carboxypeptidase C0708_08045 PF04244 Deoxyribodipyrimidine photo-lyase-related protein C0708_08050 PF01266 FAD dependent oxidoreductase C0708_08055 PF00571 CBS domain C0708_08055 PF01743 Poly A polymerase head domain C0708_08065 PF01717 Cobalamin-independent synthase, Catalytic domain C0708_08065 PF08267 Cobalamin-independent synthase, N-terminal domain C0708_08070 PF03466 LysR substrate binding domain C0708_08070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_08080 PF07715 TonB-dependent Receptor Plug Domain C0708_08080 PF00593 TonB dependent receptor C0708_08090 PF01548 Transposase C0708_08090 PF02371 Transposase IS116/IS110/IS902 family C0708_08095 PF00990 Diguanylate cyclase, GGDEF domain C0708_08095 PF17158 Membrane-associated sensor, integral membrane domain C0708_08105 PF00360 Phytochrome region C0708_08105 PF01590 GAF domain C0708_08105 PF00563 EAL domain C0708_08105 PF00990 Diguanylate cyclase, GGDEF domain C0708_08110 PF00196 Bacterial regulatory proteins, luxR family C0708_08110 PF00563 EAL domain C0708_08115 PF12833 Helix-turn-helix domain C0708_08115 PF02311 AraC-like ligand binding domain C0708_08120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_08120 PF03466 LysR substrate binding domain C0708_08125 PF13460 NAD(P)H-binding C0708_08135 PF01053 Cys/Met metabolism PLP-dependent enzyme C0708_08140 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain C0708_08140 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain C0708_08240 PF01609 Transposase DDE domain C0708_08240 PF05598 Transposase domain (DUF772) C0708_08280 PF13737 Transposase DDE domain C0708_08285 PF02492 CobW/HypB/UreG, nucleotide-binding domain C0708_08290 PF01730 UreF C0708_08300 PF05194 UreE urease accessory protein, C-terminal domain C0708_08300 PF02814 UreE urease accessory protein, N-terminal domain C0708_08310 PF00699 Urease beta subunit C0708_08315 PF00547 Urease, gamma subunit C0708_08320 PF01774 UreD urease accessory protein C0708_08325 PF00005 ABC transporter C0708_08330 PF12399 Branched-chain amino acid ATP-binding cassette transporter C0708_08330 PF00005 ABC transporter C0708_08340 PF02653 Branched-chain amino acid transport system / permease component C0708_08345 PF00158 Sigma-54 interaction domain C0708_08345 PF13188 PAS domain C0708_08345 PF02954 Bacterial regulatory protein, Fis family C0708_08360 PF00486 Transcriptional regulatory protein, C terminal C0708_08360 PF00072 Response regulator receiver domain C0708_08385 PF00990 Diguanylate cyclase, GGDEF domain C0708_08385 PF03707 Bacterial signalling protein N terminal repeat C0708_08385 PF00563 EAL domain C0708_08390 PF00672 HAMP domain C0708_08390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C0708_08390 PF00072 Response regulator receiver domain C0708_08390 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) C0708_08390 PF01627 Hpt domain C0708_08390 PF00512 His Kinase A (phospho-acceptor) domain C0708_08400 PF03707 Bacterial signalling protein N terminal repeat C0708_08400 PF00990 Diguanylate cyclase, GGDEF domain C0708_08400 PF00563 EAL domain C0708_08450 PF01609 Transposase DDE domain C0708_08450 PF05598 Transposase domain (DUF772) C0708_08510 PF07804 HipA-like C-terminal domain C0708_08510 PF13657 HipA N-terminal domain C0708_08540 PF00232 Glycosyl hydrolase family 1 C0708_08565 PF10722 Putative bacterial sensory transduction regulator C0708_08575 PF00265 Thymidine kinase C0708_08580 PF03553 Na+/H+ antiporter family C0708_08585 PF00816 H-NS histone family C0708_08590 PF01923 Cobalamin adenosyltransferase C0708_08595 PF12843 Putative quorum-sensing-regulated virulence factor C0708_08600 PF04055 Radical SAM superfamily C0708_08605 PF06508 Queuosine biosynthesis protein QueC C0708_08620 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family C0708_08625 PF18073 Rubredoxin metal binding domain C0708_08635 PF00216 Bacterial DNA-binding protein C0708_08640 PF00575 S1 RNA binding domain C0708_08645 PF02224 Cytidylate kinase C0708_08650 PF00925 GTP cyclohydrolase II C0708_08655 PF03466 LysR substrate binding domain C0708_08655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_08680 PF03806 AbgT putative transporter family C0708_08695 PF03466 LysR substrate binding domain C0708_08695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_08700 PF00072 Response regulator receiver domain C0708_08700 PF00486 Transcriptional regulatory protein, C terminal C0708_08725 PF00248 Aldo/keto reductase family C0708_08730 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) C0708_08740 PF03411 Penicillin-insensitive murein endopeptidase C0708_08750 PF04536 TPM domain C0708_08785 PF02627 Carboxymuconolactone decarboxylase family C0708_08795 PF00085 Thioredoxin C0708_08800 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C0708_08805 PF01323 DSBA-like thioredoxin domain C0708_08815 PF02899 Phage integrase, N-terminal SAM-like domain C0708_08815 PF00589 Phage integrase family C0708_08825 PF03432 Relaxase/Mobilisation nuclease domain C0708_08840 PF13737 Transposase DDE domain C0708_08845 PF13358 DDE superfamily endonuclease C0708_08845 PF13592 Winged helix-turn helix C0708_08870 PF06508 Queuosine biosynthesis protein QueC C0708_08895 PF00092 von Willebrand factor type A domain C0708_08900 PF09722 Protein of unknown function (DUF2384) C0708_08920 PF01618 MotA/TolQ/ExbB proton channel family C0708_08925 PF13677 Membrane MotB of proton-channel complex MotA/MotB C0708_08925 PF00691 OmpA family C0708_08930 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 C0708_08935 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit C0708_08955 PF00384 Molybdopterin oxidoreductase C0708_08955 PF04879 Molybdopterin oxidoreductase Fe4S4 domain C0708_08955 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region C0708_08965 PF12838 4Fe-4S dicluster domain C0708_08970 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 C0708_08975 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L C0708_08980 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus C0708_08980 PF00361 Proton-conducting membrane transporter C0708_08990 PF00361 Proton-conducting membrane transporter C0708_09005 PF07191 zinc-ribbons C0708_09010 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal C0708_09010 PF01926 50S ribosome-binding GTPase C0708_09015 PF13360 PQQ-like domain C0708_09020 PF09976 Tetratricopeptide repeat-like domain C0708_09025 PF03129 Anticodon binding domain C0708_09025 PF13393 Histidyl-tRNA synthetase C0708_09030 PF04551 GcpE protein C0708_09035 PF13464 Domain of unknown function (DUF4115) C0708_09045 PF04055 Radical SAM superfamily C0708_09050 PF00334 Nucleoside diphosphate kinase C0708_09060 PF12404 Peptidase C0708_09060 PF00883 Cytosol aminopeptidase family, catalytic domain C0708_09065 PF00111 2Fe-2S iron-sulfur cluster binding domain C0708_09070 PF00012 Hsp70 protein C0708_09075 PF00226 DnaJ domain C0708_09075 PF07743 HSCB C-terminal oligomerisation domain C0708_09080 PF01521 Iron-sulphur cluster biosynthesis C0708_09085 PF01592 NifU-like N terminal domain C0708_09090 PF00266 Aminotransferase class-V C0708_09095 PF02082 Transcriptional regulator C0708_09100 PF00588 SpoU rRNA Methylase family C0708_09105 PF02036 SCP-2 sterol transfer family C0708_09110 PF01136 Peptidase family U32 C0708_09115 PF01136 Peptidase family U32 C0708_09120 PF13181 Tetratricopeptide repeat C0708_09120 PF07719 Tetratricopeptide repeat C0708_09125 PF00581 Rhodanese-like domain C0708_09130 PF07549 SecD/SecF GG Motif C0708_09130 PF02355 Protein export membrane protein C0708_09135 PF07549 SecD/SecF GG Motif C0708_09135 PF13721 SecD export protein N-terminal TM region C0708_09135 PF02355 Protein export membrane protein C0708_09140 PF02699 Preprotein translocase subunit C0708_09145 PF01702 Queuine tRNA-ribosyltransferase C0708_09155 PF00571 CBS domain C0708_09160 PF10417 C-terminal domain of 1-Cys peroxiredoxin C0708_09160 PF00578 AhpC/TSA family C0708_09165 PF07992 Pyridine nucleotide-disulphide oxidoreductase C0708_09165 PF13192 Thioredoxin domain C0708_09190 PF02347 Glycine cleavage system P-protein C0708_09195 PF01597 Glycine cleavage H-protein C0708_09200 PF08669 Glycine cleavage T-protein C-terminal barrel domain C0708_09200 PF01571 Aminomethyltransferase folate-binding domain C0708_09205 PF02384 N-6 DNA Methylase C0708_09230 PF01494 FAD binding domain C0708_09235 PF03695 Uncharacterised protein family (UPF0149) C0708_09240 PF05164 Cell division protein ZapA C0708_09250 PF07690 Major Facilitator Superfamily C0708_09260 PF00528 Binding-protein-dependent transport system inner membrane component C0708_09260 PF12911 N-terminal TM domain of oligopeptide transport permease C C0708_09265 PF00528 Binding-protein-dependent transport system inner membrane component C0708_09275 PF02798 Glutathione S-transferase, N-terminal domain C0708_09275 PF00043 Glutathione S-transferase, C-terminal domain C0708_09290 PF00459 Inositol monophosphatase family C0708_09295 PF18393 MotY N-terminal domain C0708_09295 PF00691 OmpA family C0708_09300 PF00672 HAMP domain C0708_09300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C0708_09300 PF12729 Four helix bundle sensory module for signal transduction C0708_09305 PF00929 Exonuclease C0708_09310 PF13726 Na+-H+ antiporter family C0708_09310 PF03553 Na+/H+ antiporter family C0708_09315 PF07690 Major Facilitator Superfamily C0708_09320 PF03466 LysR substrate binding domain C0708_09320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_09325 PF00990 Diguanylate cyclase, GGDEF domain C0708_09325 PF08447 PAS fold C0708_09325 PF00563 EAL domain C0708_09325 PF08448 PAS fold C0708_09335 PF00271 Helicase conserved C-terminal domain C0708_09335 PF03880 DbpA RNA binding domain C0708_09335 PF00270 DEAD/DEAH box helicase C0708_09340 PF03061 Thioesterase superfamily C0708_09360 PF05598 Transposase domain (DUF772) C0708_09360 PF01609 Transposase DDE domain C0708_09375 PF03471 Transporter associated domain C0708_09375 PF03741 Integral membrane protein TerC family C0708_09380 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C0708_09385 PF08240 Alcohol dehydrogenase GroES-like domain C0708_09385 PF00107 Zinc-binding dehydrogenase C0708_09395 PF13344 Haloacid dehalogenase-like hydrolase C0708_09405 PF13537 Glutamine amidotransferase domain C0708_09405 PF00733 Asparagine synthase C0708_09420 PF02798 Glutathione S-transferase, N-terminal domain C0708_09420 PF14497 Glutathione S-transferase, C-terminal domain C0708_09430 PF04209 homogentisate 1,2-dioxygenase C0708_09435 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C0708_09445 PF00849 RNA pseudouridylate synthase C0708_09455 PF00672 HAMP domain C0708_09455 PF12729 Four helix bundle sensory module for signal transduction C0708_09455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C0708_09465 PF00285 Citrate synthase, C-terminal domain C0708_09470 PF00330 Aconitase family (aconitate hydratase) C0708_09470 PF00694 Aconitase C-terminal domain C0708_09485 PF00593 TonB dependent receptor C0708_09485 PF07715 TonB-dependent Receptor Plug Domain C0708_09485 PF07660 Secretin and TonB N terminus short domain C0708_09495 PF01027 Inhibitor of apoptosis-promoting Bax1 C0708_09500 PF12805 FUSC-like inner membrane protein yccS C0708_09505 PF04358 DsrC like protein C0708_09510 PF05036 Sporulation related domain C0708_09520 PF17848 Acetyl-coA carboxylase zinc finger domain C0708_09520 PF01039 Carboxyl transferase domain C0708_09525 PF01416 tRNA pseudouridine synthase C0708_09535 PF01118 Semialdehyde dehydrogenase, NAD binding domain C0708_09535 PF02774 Semialdehyde dehydrogenase, dimerisation domain C0708_09540 PF11890 Domain of unknown function (DUF3410) C0708_09540 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C0708_09540 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C0708_09550 PF03180 NLPA lipoprotein C0708_09580 PF00005 ABC transporter C0708_09585 PF00391 PEP-utilising enzyme, mobile domain C0708_09585 PF02896 PEP-utilising enzyme, TIM barrel domain C0708_09585 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain C0708_09590 PF03618 Kinase/pyrophosphorylase C0708_09600 PF00324 Amino acid permease C0708_09650 PF00664 ABC transporter transmembrane region C0708_09650 PF03412 Peptidase C39 family C0708_09650 PF00005 ABC transporter C0708_09660 PF00310 Glutamine amidotransferases class-II C0708_09660 PF01645 Conserved region in glutamate synthase C0708_09660 PF04898 Glutamate synthase central domain C0708_09660 PF01493 GXGXG motif C0708_09665 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster C0708_09665 PF07992 Pyridine nucleotide-disulphide oxidoreductase C0708_09685 PF14521 Lysine-specific metallo-endopeptidase C0708_09695 PF00270 DEAD/DEAH box helicase C0708_09695 PF00271 Helicase conserved C-terminal domain C0708_09715 PF08378 Nuclease-related domain C0708_09730 PF00682 HMGL-like C0708_09730 PF08502 LeuA allosteric (dimerisation) domain C0708_09740 PF13542 Helix-turn-helix domain of transposase family ISL3 C0708_09740 PF01610 Transposase C0708_09740 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 C0708_09745 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C0708_09745 PF02142 MGS-like domain C0708_09745 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain C0708_09750 PF00117 Glutamine amidotransferase class-I C0708_09750 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain C0708_09765 PF01812 5-formyltetrahydrofolate cyclo-ligase family C0708_09775 PF01842 ACT domain C0708_09775 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C0708_09775 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C0708_09780 PF01219 Prokaryotic diacylglycerol kinase C0708_09785 PF00793 DAHP synthetase I family C0708_09795 PF01032 FecCD transport family C0708_09810 PF00437 Type II/IV secretion system protein C0708_09830 PF01253 Translation initiation factor SUI1 C0708_09835 PF01169 Uncharacterized protein family UPF0016 C0708_09870 PF00990 Diguanylate cyclase, GGDEF domain C0708_09870 PF13185 GAF domain C0708_09885 PF09190 DALR domain C0708_09885 PF01406 tRNA synthetases class I (C) catalytic domain C0708_09890 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD C0708_09905 PF04226 Transglycosylase associated protein C0708_09910 PF00440 Bacterial regulatory proteins, tetR family C0708_09910 PF16925 Tetracyclin repressor-like, C-terminal domain C0708_09915 PF08240 Alcohol dehydrogenase GroES-like domain C0708_09915 PF00107 Zinc-binding dehydrogenase C0708_09930 PF01609 Transposase DDE domain C0708_09930 PF05598 Transposase domain (DUF772) C0708_09960 PF01548 Transposase C0708_09960 PF02371 Transposase IS116/IS110/IS902 family C0708_09980 PF13356 Arm DNA-binding domain C0708_09980 PF00589 Phage integrase family C0708_10000 PF01066 CDP-alcohol phosphatidyltransferase C0708_10005 PF08459 UvrC Helix-hairpin-helix N-terminal C0708_10005 PF01541 GIY-YIG catalytic domain C0708_10005 PF02151 UvrB/uvrC motif C0708_10010 PF00196 Bacterial regulatory proteins, luxR family C0708_10010 PF00072 Response regulator receiver domain C0708_10015 PF02348 Cytidylyltransferase C0708_10020 PF03966 Trm112p-like protein C0708_10025 PF02606 Tetraacyldisaccharide-1-P 4'-kinase C0708_10030 PF00005 ABC transporter C0708_10030 PF00664 ABC transporter transmembrane region C0708_10035 PF00753 Metallo-beta-lactamase superfamily C0708_10035 PF03772 Competence protein C0708_10050 PF05872 Bacterial protein of unknown function (DUF853) C0708_10055 PF00155 Aminotransferase class I and II C0708_10065 PF13609 Gram-negative porin C0708_10070 PF06733 DEAD_2 C0708_10070 PF13307 Helicase C-terminal domain C0708_10080 PF00850 Histone deacetylase domain C0708_10085 PF07690 Major Facilitator Superfamily C0708_10095 PF00245 Alkaline phosphatase C0708_10125 PF00497 Bacterial extracellular solute-binding proteins, family 3 C0708_10130 PF00528 Binding-protein-dependent transport system inner membrane component C0708_10145 PF13520 Amino acid permease C0708_10150 PF00809 Pterin binding enzyme C0708_10150 PF02574 Homocysteine S-methyltransferase C0708_10150 PF02965 Vitamin B12 dependent methionine synthase, activation domain C0708_10150 PF02310 B12 binding domain C0708_10150 PF02607 B12 binding domain C0708_10160 PF00571 CBS domain C0708_10160 PF01595 Cyclin M transmembrane N-terminal domain C0708_10160 PF03471 Transporter associated domain C0708_10165 PF01895 PhoU domain C0708_10175 PF00528 Binding-protein-dependent transport system inner membrane component C0708_10180 PF00528 Binding-protein-dependent transport system inner membrane component C0708_10185 PF14437 MafB19-like deaminase C0708_10200 PF01274 Malate synthase C0708_10205 PF00463 Isocitrate lyase family C0708_10210 PF00308 Bacterial dnaA protein C0708_10225 PF02769 AIR synthase related protein, C-terminal domain C0708_10225 PF00586 AIR synthase related protein, N-terminal domain C0708_10230 PF00551 Formyl transferase C0708_10235 PF01784 NIF3 (NGG1p interacting factor 3) C0708_10240 PF00072 Response regulator receiver domain C0708_10240 PF02954 Bacterial regulatory protein, Fis family C0708_10240 PF00158 Sigma-54 interaction domain C0708_10245 PF00512 His Kinase A (phospho-acceptor) domain C0708_10245 PF00989 PAS fold C0708_10245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C0708_10250 PF00158 Sigma-54 interaction domain C0708_10250 PF06490 Flagellar regulatory protein FleQ C0708_10250 PF02954 Bacterial regulatory protein, Fis family C0708_10260 PF01842 ACT domain C0708_10265 PF13089 Polyphosphate kinase N-terminal domain C0708_10265 PF17941 Polyphosphate kinase C-terminal domain 1 C0708_10265 PF13090 Polyphosphate kinase C-terminal domain 2 C0708_10265 PF02503 Polyphosphate kinase middle domain C0708_10270 PF02541 Ppx/GppA phosphatase family C0708_10280 PF12323 Helix-turn-helix domain C0708_10280 PF01385 Probable transposase C0708_10280 PF07282 Putative transposase DNA-binding domain C0708_10300 PF13542 Helix-turn-helix domain of transposase family ISL3 C0708_10300 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 C0708_10300 PF01610 Transposase C0708_10325 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase C0708_10325 PF10135 Rod binding protein C0708_10330 PF02119 Flagellar P-ring protein C0708_10335 PF02107 Flagellar L-ring protein C0708_10340 PF00460 Flagella basal body rod protein C0708_10340 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C0708_10345 PF00460 Flagella basal body rod protein C0708_10345 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C0708_10350 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C0708_10350 PF00460 Flagella basal body rod protein C0708_10360 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C0708_10360 PF00460 Flagella basal body rod protein C0708_10365 PF00460 Flagella basal body rod protein C0708_10370 PF03705 CheR methyltransferase, all-alpha domain C0708_10370 PF01739 CheR methyltransferase, SAM binding domain C0708_10375 PF01584 CheW-like domain C0708_10375 PF00072 Response regulator receiver domain C0708_10380 PF13144 Chaperone for flagella basal body P-ring formation C0708_10395 PF12850 Calcineurin-like phosphoesterase superfamily domain C0708_10420 PF01479 S4 domain C0708_10420 PF00849 RNA pseudouridylate synthase C0708_10425 PF01966 HD domain C0708_10430 PF12323 Helix-turn-helix domain C0708_10430 PF01385 Probable transposase C0708_10430 PF07282 Putative transposase DNA-binding domain C0708_10440 PF00892 EamA-like transporter family C0708_10445 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C0708_10455 PF01548 Transposase C0708_10455 PF02371 Transposase IS116/IS110/IS902 family C0708_10480 PF00313 'Cold-shock' DNA-binding domain C0708_10485 PF00364 Biotin-requiring enzyme C0708_10485 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) C0708_10485 PF02817 e3 binding domain C0708_10490 PF07282 Putative transposase DNA-binding domain C0708_10490 PF12323 Helix-turn-helix domain C0708_10490 PF01385 Probable transposase C0708_10500 PF02780 Transketolase, C-terminal domain C0708_10500 PF02779 Transketolase, pyrimidine binding domain C0708_10505 PF00676 Dehydrogenase E1 component C0708_10510 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family C0708_10520 PF05472 DNA replication terminus site-binding protein (Ter protein) C0708_10530 PF04337 Protein of unknown function, DUF480 C0708_10540 PF06082 Exopolysaccharide biosynthesis protein YbjH C0708_10545 PF06251 Capsule biosynthesis GfcC C0708_10560 PF02706 Chain length determinant protein C0708_10560 PF13807 G-rich domain on putative tyrosine kinase C0708_10560 PF13614 AAA domain C0708_10565 PF01451 Low molecular weight phosphotyrosine protein phosphatase C0708_10570 PF18412 Outer-membrane lipoprotein Wza C-terminal domain C0708_10570 PF10531 SLBB domain C0708_10570 PF02563 Polysaccharide biosynthesis/export protein C0708_10600 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase C0708_10605 PF04321 RmlD substrate binding domain C0708_10610 PF02719 Polysaccharide biosynthesis protein C0708_10615 PF02397 Bacterial sugar transferase C0708_10620 PF01370 NAD dependent epimerase/dehydratase family C0708_10625 PF13477 Glycosyl transferase 4-like C0708_10625 PF00534 Glycosyl transferases group 1 C0708_10640 PF13439 Glycosyltransferase Family 4 C0708_10640 PF00534 Glycosyl transferases group 1 C0708_10655 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family C0708_10670 PF05523 WxcM-like, C-terminal C0708_10675 PF00483 Nucleotidyl transferase C0708_10680 PF16363 GDP-mannose 4,6 dehydratase C0708_10685 PF00486 Transcriptional regulatory protein, C terminal C0708_10685 PF00072 Response regulator receiver domain C0708_10690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C0708_10690 PF08918 PhoQ Sensor C0708_10695 PF02685 Glucokinase C0708_10700 PF01380 SIS domain C0708_10700 PF01418 Helix-turn-helix domain, rpiR family C0708_10705 PF00224 Pyruvate kinase, barrel domain C0708_10705 PF02887 Pyruvate kinase, alpha/beta domain C0708_10720 PF09317 Domain of unknown function (DUF1974) C0708_10720 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C0708_10720 PF02770 Acyl-CoA dehydrogenase, middle domain C0708_10720 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C0708_10725 PF00440 Bacterial regulatory proteins, tetR family C0708_10730 PF13542 Helix-turn-helix domain of transposase family ISL3 C0708_10730 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 C0708_10730 PF01610 Transposase C0708_10750 PF01695 IstB-like ATP binding protein C0708_10755 PF00665 Integrase core domain C0708_10770 PF03466 LysR substrate binding domain C0708_10770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_10775 PF03358 NADPH-dependent FMN reductase C0708_10785 PF01717 Cobalamin-independent synthase, Catalytic domain C0708_10800 PF04002 RadC-like JAB domain C0708_10870 PF00873 AcrB/AcrD/AcrF family C0708_10880 PF08361 MAATS-type transcriptional repressor, C-terminal region C0708_10880 PF00440 Bacterial regulatory proteins, tetR family C0708_10905 PF01479 S4 domain C0708_10905 PF00849 RNA pseudouridylate synthase C0708_10915 PF02616 Segregation and condensation protein ScpA C0708_10920 PF01300 Telomere recombination C0708_10930 PF00425 chorismate binding enzyme C0708_10930 PF04715 Anthranilate synthase component I, N terminal region C0708_10935 PF00591 Glycosyl transferase family, a/b domain C0708_10935 PF00117 Glutamine amidotransferase class-I C0708_10935 PF02885 Glycosyl transferase family, helical bundle domain C0708_10940 PF00591 Glycosyl transferase family, a/b domain C0708_10940 PF02885 Glycosyl transferase family, helical bundle domain C0708_10950 PF00291 Pyridoxal-phosphate dependent enzyme C0708_10960 PF01381 Helix-turn-helix C0708_10965 PF13657 HipA N-terminal domain C0708_10965 PF07804 HipA-like C-terminal domain C0708_10995 PF01609 Transposase DDE domain C0708_10995 PF13006 Insertion element 4 transposase N-terminal C0708_11000 PF07237 Protein of unknown function (DUF1428) C0708_11005 PF07690 Major Facilitator Superfamily C0708_11015 PF03626 Prokaryotic Cytochrome C oxidase subunit IV C0708_11020 PF00510 Cytochrome c oxidase subunit III C0708_11025 PF00115 Cytochrome C and Quinol oxidase polypeptide I C0708_11030 PF00116 Cytochrome C oxidase subunit II, periplasmic domain C0708_11030 PF06481 COX Aromatic Rich Motif C0708_11035 PF02627 Carboxymuconolactone decarboxylase family C0708_11040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_11040 PF03466 LysR substrate binding domain C0708_11050 PF01156 Inosine-uridine preferring nucleoside hydrolase C0708_11060 PF01047 MarR family C0708_11080 PF02424 ApbE family C0708_11085 PF00011 Hsp20/alpha crystallin family C0708_11090 PF00072 Response regulator receiver domain C0708_11100 PF03372 Endonuclease/Exonuclease/phosphatase family C0708_11110 PF00529 HlyD membrane-fusion protein of T1SS C0708_11110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C0708_11115 PF00873 AcrB/AcrD/AcrF family C0708_11130 PF10437 Bacterial lipoate protein ligase C-terminus C0708_11130 PF03099 Biotin/lipoate A/B protein ligase family C0708_11135 PF00990 Diguanylate cyclase, GGDEF domain C0708_11135 PF03707 Bacterial signalling protein N terminal repeat C0708_11135 PF00563 EAL domain C0708_11140 PF00873 AcrB/AcrD/AcrF family C0708_11155 PF04143 Sulphur transport C0708_11160 PF01022 Bacterial regulatory protein, arsR family C0708_11170 PF07992 Pyridine nucleotide-disulphide oxidoreductase C0708_11180 PF02308 MgtC family C0708_11190 PF08244 Glycosyl hydrolases family 32 C terminal C0708_11190 PF00251 Glycosyl hydrolases family 32 N-terminal domain C0708_11195 PF00367 phosphotransferase system, EIIB C0708_11195 PF02378 Phosphotransferase system, EIIC C0708_11205 PF11471 Maltoporin periplasmic N-terminal extension C0708_11205 PF02264 LamB porin C0708_11210 PF00226 DnaJ domain C0708_11210 PF01556 DnaJ C terminal domain C0708_11210 PF00684 DnaJ central domain C0708_11215 PF00012 Hsp70 protein C0708_11220 PF01025 GrpE C0708_11225 PF01513 ATP-NAD kinase C0708_11235 PF02463 RecF/RecN/SMC N terminal domain C0708_11245 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C0708_11250 PF00005 ABC transporter C0708_11250 PF02687 FtsX-like permease family C0708_11250 PF12704 MacB-like periplasmic core domain C0708_11255 PF02321 Outer membrane efflux protein C0708_11260 PF04954 Siderophore-interacting protein C0708_11260 PF08021 Siderophore-interacting FAD-binding domain C0708_11270 PF13592 Winged helix-turn helix C0708_11270 PF13358 DDE superfamily endonuclease C0708_11275 PF00816 H-NS histone family C0708_11280 PF03466 LysR substrate binding domain C0708_11280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_11285 PF00291 Pyridoxal-phosphate dependent enzyme C0708_11295 PF00180 Isocitrate/isopropylmalate dehydrogenase C0708_11325 PF00583 Acetyltransferase (GNAT) family C0708_11330 PF00849 RNA pseudouridylate synthase C0708_11345 PF04356 Protein of unknown function (DUF489) C0708_11350 PF08328 Adenylosuccinate lyase C-terminal C0708_11350 PF00206 Lyase C0708_11355 PF08007 Cupin superfamily protein C0708_11360 PF02887 Pyruvate kinase, alpha/beta domain C0708_11360 PF00224 Pyruvate kinase, barrel domain C0708_11365 PF00924 Mechanosensitive ion channel C0708_11365 PF12795 Mechanosensitive ion channel porin domain C0708_11365 PF12794 Mechanosensitive ion channel inner membrane domain 1 C0708_11370 PF01810 LysE type translocator C0708_11375 PF10282 Lactonase, 7-bladed beta-propeller C0708_11385 PF00860 Permease family C0708_11400 PF12804 MobA-like NTP transferase domain C0708_11405 PF03205 Molybdopterin guanine dinucleotide synthesis protein B C0708_11410 PF04632 Fusaric acid resistance protein family C0708_11425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C0708_11425 PF08447 PAS fold C0708_11425 PF13426 PAS domain C0708_11445 PF05114 Protein of unknown function (DUF692) C0708_11460 PF02028 BCCT, betaine/carnitine/choline family transporter C0708_11470 PF02463 RecF/RecN/SMC N terminal domain C0708_11505 PF00291 Pyridoxal-phosphate dependent enzyme C0708_11505 PF14821 Threonine synthase N terminus C0708_11510 PF08544 GHMP kinases C terminal C0708_11510 PF00288 GHMP kinases N terminal domain C0708_11515 PF00696 Amino acid kinase family C0708_11515 PF01842 ACT domain C0708_11515 PF03447 Homoserine dehydrogenase, NAD binding domain C0708_11515 PF13840 ACT domain C0708_11515 PF00742 Homoserine dehydrogenase C0708_11525 PF00588 SpoU rRNA Methylase family C0708_11545 PF03737 Aldolase/RraA C0708_11555 PF00486 Transcriptional regulatory protein, C terminal C0708_11555 PF00072 Response regulator receiver domain C0708_11570 PF00005 ABC transporter C0708_11570 PF00664 ABC transporter transmembrane region C0708_11575 PF00664 ABC transporter transmembrane region C0708_11575 PF00005 ABC transporter C0708_11595 PF01980 tRNA-methyltransferase O C0708_11595 PF18389 TrmO C-terminal domain C0708_11600 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C0708_11600 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal C0708_11610 PF17862 AAA+ lid domain C0708_11610 PF00004 ATPase family associated with various cellular activities (AAA) C0708_11610 PF01434 Peptidase family M41 C0708_11615 PF00291 Pyridoxal-phosphate dependent enzyme C0708_11620 PF00381 PTS HPr component phosphorylation site C0708_11625 PF02896 PEP-utilising enzyme, TIM barrel domain C0708_11625 PF00391 PEP-utilising enzyme, mobile domain C0708_11625 PF05524 PEP-utilising enzyme, N-terminal C0708_11630 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 C0708_11645 PF00149 Calcineurin-like phosphoesterase C0708_11645 PF12320 Type 5 capsule protein repressor C-terminal domain C0708_11655 PF04381 Putative exonuclease, RdgC C0708_11670 PF00999 Sodium/hydrogen exchanger family C0708_11670 PF02254 TrkA-N domain C0708_11675 PF02954 Bacterial regulatory protein, Fis family C0708_11675 PF00072 Response regulator receiver domain C0708_11675 PF00158 Sigma-54 interaction domain C0708_11710 PF01266 FAD dependent oxidoreductase C0708_11715 PF07883 Cupin domain C0708_11715 PF01381 Helix-turn-helix C0708_11720 PF00171 Aldehyde dehydrogenase family C0708_11730 PF00202 Aminotransferase class-III C0708_11735 PF00324 Amino acid permease C0708_11740 PF13520 Amino acid permease C0708_11755 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase C0708_11755 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C0708_11760 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase C0708_11770 PF10725 Protein of unknown function (DUF2517) C0708_11790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C0708_11790 PF00512 His Kinase A (phospho-acceptor) domain C0708_11790 PF09308 LuxQ, periplasmic C0708_11790 PF00072 Response regulator receiver domain C0708_11810 PF01575 MaoC like domain C0708_11815 PF05971 RNA methyltransferase C0708_11820 PF00877 NlpC/P60 family C0708_11825 PF01648 4'-phosphopantetheinyl transferase superfamily C0708_11830 PF00085 Thioredoxin C0708_11840 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase C0708_11845 PF00551 Formyl transferase C0708_11845 PF01842 ACT domain C0708_11870 PF01464 Transglycosylase SLT domain C0708_11870 PF10145 Phage-related minor tail protein C0708_11870 PF01551 Peptidase family M23 C0708_11885 PF01408 Oxidoreductase family, NAD-binding Rossmann fold C0708_11915 PF08497 Radical SAM N-terminal C0708_11915 PF04055 Radical SAM superfamily C0708_11915 PF11842 Domain of unknown function (DUF3362) C0708_11955 PF01389 OmpA-like transmembrane domain C0708_11955 PF00691 OmpA family C0708_11960 PF00691 OmpA family C0708_11960 PF01389 OmpA-like transmembrane domain C0708_11965 PF00691 OmpA family C0708_11965 PF01389 OmpA-like transmembrane domain C0708_11970 PF00390 Malic enzyme, N-terminal domain C0708_11970 PF03949 Malic enzyme, NAD binding domain C0708_11975 PF12833 Helix-turn-helix domain C0708_11985 PF10692 Protein of unknown function (DUF2498) C0708_11990 PF00072 Response regulator receiver domain C0708_11990 PF00990 Diguanylate cyclase, GGDEF domain C0708_12000 PF00860 Permease family C0708_12010 PF01235 Sodium:alanine symporter family C0708_12015 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain C0708_12015 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain C0708_12020 PF01699 Sodium/calcium exchanger protein C0708_12025 PF08534 Redoxin C0708_12030 PF00293 NUDIX domain C0708_12040 PF00005 ABC transporter C0708_12045 PF00528 Binding-protein-dependent transport system inner membrane component C0708_12050 PF00528 Binding-protein-dependent transport system inner membrane component C0708_12055 PF00497 Bacterial extracellular solute-binding proteins, family 3 C0708_12075 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C0708_12075 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase C0708_12080 PF03932 CutC family C0708_12085 PF00480 ROK family C0708_12095 PF01435 Peptidase family M48 C0708_12100 PF12849 PBP superfamily domain C0708_12105 PF00512 His Kinase A (phospho-acceptor) domain C0708_12105 PF00989 PAS fold C0708_12105 PF11808 Phosphate regulon sensor protein PhoR C0708_12105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C0708_12110 PF00072 Response regulator receiver domain C0708_12110 PF00486 Transcriptional regulatory protein, C terminal C0708_12125 PF00158 Sigma-54 interaction domain C0708_12125 PF02954 Bacterial regulatory protein, Fis family C0708_12125 PF01590 GAF domain C0708_12130 PF00171 Aldehyde dehydrogenase family C0708_12140 PF00892 EamA-like transporter family C0708_12145 PF00248 Aldo/keto reductase family C0708_12155 PF01609 Transposase DDE domain C0708_12155 PF13006 Insertion element 4 transposase N-terminal C0708_12160 PF12431 Transcriptional regulator C0708_12160 PF00072 Response regulator receiver domain C0708_12170 PF01047 MarR family C0708_12175 PF00529 HlyD membrane-fusion protein of T1SS C0708_12175 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C0708_12195 PF01679 Proteolipid membrane potential modulator C0708_12205 PF03477 ATP cone domain C0708_12205 PF13597 Anaerobic ribonucleoside-triphosphate reductase C0708_12215 PF03119 NAD-dependent DNA ligase C4 zinc finger domain C0708_12215 PF03120 NAD-dependent DNA ligase OB-fold domain C0708_12215 PF01653 NAD-dependent DNA ligase adenylation domain C0708_12215 PF00533 BRCA1 C Terminus (BRCT) domain C0708_12215 PF12826 Helix-hairpin-helix motif C0708_12220 PF04354 ZipA, C-terminal FtsZ-binding domain C0708_12245 PF05951 Bacterial protein of unknown function (DUF882) C0708_12250 PF13006 Insertion element 4 transposase N-terminal C0708_12250 PF01609 Transposase DDE domain C0708_12255 PF03734 L,D-transpeptidase catalytic domain C0708_12255 PF01471 Putative peptidoglycan binding domain C0708_12270 PF00535 Glycosyl transferase family 2 C0708_12285 PF00128 Alpha amylase, catalytic domain C0708_12325 PF02254 TrkA-N domain C0708_12325 PF02080 TrkA-C domain C0708_12325 PF00999 Sodium/hydrogen exchanger family C0708_12330 PF00990 Diguanylate cyclase, GGDEF domain C0708_12335 PF01171 PP-loop family C0708_12335 PF11734 TilS substrate C-terminal domain C0708_12335 PF09179 TilS substrate binding domain C0708_12340 PF05649 Peptidase family M13 C0708_12340 PF01431 Peptidase family M13 C0708_12360 PF13520 Amino acid permease C0708_12380 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit C0708_12385 PF02811 PHP domain C0708_12385 PF01336 OB-fold nucleic acid binding domain C0708_12385 PF07733 Bacterial DNA polymerase III alpha NTPase domain C0708_12385 PF17657 Bacterial DNA polymerase III alpha subunit finger domain C0708_12385 PF14579 Helix-hairpin-helix motif C0708_12390 PF01351 Ribonuclease HII C0708_12400 PF00132 Bacterial transferase hexapeptide (six repeats) C0708_12400 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 C0708_12405 PF07977 FabA-like domain C0708_12410 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD C0708_12410 PF00132 Bacterial transferase hexapeptide (six repeats) C0708_12415 PF03938 Outer membrane protein (OmpH-like) C0708_12420 PF07244 Surface antigen variable number repeat C0708_12420 PF01103 Surface antigen C0708_12425 PF02163 Peptidase family M50 C0708_12425 PF17820 PDZ domain C0708_12440 PF01255 Putative undecaprenyl diphosphate synthase C0708_12445 PF01765 Ribosome recycling factor C0708_12450 PF00696 Amino acid kinase family C0708_12455 PF00889 Elongation factor TS C0708_12460 PF00318 Ribosomal protein S2 C0708_12465 PF00557 Metallopeptidase family M24 C0708_12470 PF01842 ACT domain C0708_12470 PF01909 Nucleotidyltransferase domain C0708_12470 PF01966 HD domain C0708_12470 PF08335 GlnD PII-uridylyltransferase C0708_12475 PF14602 Hexapeptide repeat of succinyl-transferase C0708_12475 PF00132 Bacterial transferase hexapeptide (six repeats) C0708_12475 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal C0708_12480 PF11944 Protein of unknown function (DUF3461) C0708_12485 PF00367 phosphotransferase system, EIIB C0708_12485 PF02378 Phosphotransferase system, EIIC C0708_12490 PF07148 Maltose operon periplasmic protein precursor (MalM) C0708_12495 PF02264 LamB porin C0708_12500 PF00258 Flavodoxin C0708_12510 PF04287 tRNA pseudouridine synthase C C0708_12535 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) C0708_12540 PF07348 Syd protein (SUKH-2) C0708_12555 PF00990 Diguanylate cyclase, GGDEF domain C0708_12565 PF01367 5'-3' exonuclease, C-terminal SAM fold C0708_12565 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain C0708_12570 PF00180 Isocitrate/isopropylmalate dehydrogenase C0708_12570 PF18324 Hypothetical protein TT1725 C0708_12580 PF18125 RlmM ferredoxin-like domain C0708_12580 PF01728 FtsJ-like methyltransferase C0708_12595 PF03466 LysR substrate binding domain C0708_12595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_12600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C0708_12600 PF00672 HAMP domain C0708_12605 PF11799 impB/mucB/samB family C-terminal domain C0708_12605 PF11798 IMS family HHH motif C0708_12605 PF00817 impB/mucB/samB family C0708_12620 PF02424 ApbE family C0708_12625 PF00970 Oxidoreductase FAD-binding domain C0708_12625 PF00111 2Fe-2S iron-sulfur cluster binding domain C0708_12625 PF00175 Oxidoreductase NAD-binding domain C0708_12630 PF02508 Rnf-Nqr subunit, membrane protein C0708_12635 PF02508 Rnf-Nqr subunit, membrane protein C0708_12640 PF04205 FMN-binding domain C0708_12645 PF03116 NQR2, RnfD, RnfE family C0708_12650 PF11973 NQRA C-terminal domain C0708_12650 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) C0708_12655 PF01722 BolA-like protein C0708_12660 PF05175 Methyltransferase small domain C0708_12670 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD C0708_12680 PF07690 Major Facilitator Superfamily C0708_12685 PF03502 Nucleoside-specific channel-forming protein, Tsx C0708_12690 PF04461 Protein of unknown function (DUF520) C0708_12695 PF02558 Ketopantoate reductase PanE/ApbA C0708_12695 PF08546 Ketopantoate reductase PanE/ApbA C terminal C0708_12700 PF01965 DJ-1/PfpI family C0708_12705 PF01740 STAS domain C0708_12705 PF00916 Sulfate permease family C0708_12710 PF00512 His Kinase A (phospho-acceptor) domain C0708_12710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C0708_12710 PF00672 HAMP domain C0708_12715 PF00072 Response regulator receiver domain C0708_12715 PF00486 Transcriptional regulatory protein, C terminal C0708_12720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C0708_12720 PF00529 HlyD membrane-fusion protein of T1SS C0708_12725 PF00873 AcrB/AcrD/AcrF family C0708_12745 PF16363 GDP-mannose 4,6 dehydratase C0708_12750 PF00175 Oxidoreductase NAD-binding domain C0708_12750 PF00970 Oxidoreductase FAD-binding domain C0708_12750 PF00042 Globin C0708_12755 PF03063 Prismane/CO dehydrogenase family C0708_12760 PF00210 Ferritin-like domain C0708_12800 PF00106 short chain dehydrogenase C0708_12810 PF00875 DNA photolyase C0708_12810 PF03441 FAD binding domain of DNA photolyase C0708_12815 PF13411 MerR HTH family regulatory protein C0708_12820 PF08349 Protein of unknown function (DUF1722) C0708_12845 PF00800 Prephenate dehydratase C0708_12845 PF01817 Chorismate mutase type II C0708_12870 PF03976 Polyphosphate kinase 2 (PPK2) C0708_12875 PF07995 Glucose / Sorbosone dehydrogenase C0708_12890 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C0708_12890 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C0708_12895 PF07005 Sugar-binding N-terminal domain C0708_12895 PF17042 Nucleotide-binding C-terminal domain C0708_12905 PF01261 Xylose isomerase-like TIM barrel C0708_12915 PF02447 GntP family permease C0708_12930 PF03573 outer membrane porin, OprD family C0708_12935 PF00106 short chain dehydrogenase C0708_12970 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain C0708_12970 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain C0708_12980 PF06906 Protein of unknown function (DUF1272) C0708_12995 PF01810 LysE type translocator C0708_13045 PF04397 LytTr DNA-binding domain C0708_13045 PF00072 Response regulator receiver domain C0708_13050 PF02554 Carbon starvation protein CstA C0708_13050 PF13722 5TM C-terminal transporter carbon starvation CstA C0708_13055 PF03575 Peptidase family S51 C0708_13060 PF10415 Fumarase C C-terminus C0708_13060 PF00206 Lyase C0708_13075 PF00842 Alanine racemase, C-terminal domain C0708_13075 PF01168 Alanine racemase, N-terminal domain C0708_13080 PF00772 DnaB-like helicase N terminal domain C0708_13080 PF03796 DnaB-like helicase C terminal domain C0708_13090 PF02872 5'-nucleotidase, C-terminal domain C0708_13090 PF00149 Calcineurin-like phosphoesterase C0708_13110 PF02954 Bacterial regulatory protein, Fis family C0708_13110 PF00072 Response regulator receiver domain C0708_13110 PF00158 Sigma-54 interaction domain C0708_13115 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase C0708_13115 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C0708_13125 PF04102 SlyX C0708_13130 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C0708_13135 PF09526 Probable metal-binding protein (DUF2387) C0708_13145 PF01584 CheW-like domain C0708_13145 PF00072 Response regulator receiver domain C0708_13150 PF00561 alpha/beta hydrolase fold C0708_13155 PF00563 EAL domain C0708_13155 PF01590 GAF domain C0708_13155 PF00990 Diguanylate cyclase, GGDEF domain C0708_13155 PF00360 Phytochrome region C0708_13160 PF06794 Uncharacterised protein family (UPF0270) C0708_13165 PF00485 Phosphoribulokinase / Uridine kinase family C0708_13180 PF02566 OsmC-like protein C0708_13185 PF00027 Cyclic nucleotide-binding domain C0708_13185 PF13545 Crp-like helix-turn-helix domain C0708_13190 PF13847 Methyltransferase domain C0708_13195 PF08329 Chitinase A, N-terminal domain C0708_13195 PF00704 Glycosyl hydrolases family 18 C0708_13210 PF00593 TonB dependent receptor C0708_13210 PF07715 TonB-dependent Receptor Plug Domain C0708_13235 PF06228 Haem utilisation ChuX/HutX C0708_13250 PF00005 ABC transporter C0708_13260 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain C0708_13260 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain C0708_13260 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain C0708_13265 PF01370 NAD dependent epimerase/dehydratase family C0708_13290 PF01464 Transglycosylase SLT domain C0708_13295 PF00005 ABC transporter C0708_13295 PF12848 ABC transporter C0708_13305 PF00860 Permease family C0708_13310 PF00226 DnaJ domain C0708_13310 PF05099 Tellurite resistance protein TerB C0708_13315 PF00483 Nucleotidyl transferase C0708_13320 PF01636 Phosphotransferase enzyme family C0708_13330 PF00639 PPIC-type PPIASE domain C0708_13330 PF09312 SurA N-terminal domain C0708_13340 PF00398 Ribosomal RNA adenine dimethylase C0708_13345 PF04379 ApaG domain C0708_13350 PF00149 Calcineurin-like phosphoesterase C0708_13375 PF01926 50S ribosome-binding GTPase C0708_13375 PF01018 GTP1/OBG C0708_13380 PF01016 Ribosomal L27 protein C0708_13385 PF00829 Ribosomal prokaryotic L21 protein C0708_13390 PF00348 Polyprenyl synthetase C0708_13395 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) C0708_13400 PF01145 SPFH domain / Band 7 family C0708_13410 PF01926 50S ribosome-binding GTPase C0708_13410 PF13167 GTP-binding GTPase N-terminal C0708_13410 PF16360 GTP-binding GTPase Middle Region C0708_13415 PF17209 Hfq protein C0708_13425 PF08676 MutL C terminal dimerisation domain C0708_13425 PF01119 DNA mismatch repair protein, C-terminal domain C0708_13430 PF01520 N-acetylmuramoyl-L-alanine amidase C0708_13435 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE C0708_13440 PF01256 Carbohydrate kinase C0708_13440 PF03853 YjeF-related protein N-terminus C0708_13445 PF08331 Domain of unknown function (DUF1730) C0708_13460 PF09383 NIL domain C0708_13460 PF00005 ABC transporter C0708_13465 PF00528 Binding-protein-dependent transport system inner membrane component C0708_13470 PF03180 NLPA lipoprotein C0708_13480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C0708_13485 PF00563 EAL domain C0708_13485 PF03707 Bacterial signalling protein N terminal repeat C0708_13485 PF00990 Diguanylate cyclase, GGDEF domain C0708_13505 PF01627 Hpt domain C0708_13505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C0708_13505 PF00072 Response regulator receiver domain C0708_13505 PF00512 His Kinase A (phospho-acceptor) domain C0708_13505 PF00989 PAS fold C0708_13505 PF18415 Histidine kinase receptor ArcB trans-membrane domain C0708_13525 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) C0708_13530 PF03466 LysR substrate binding domain C0708_13530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_13540 PF01259 SAICAR synthetase C0708_13545 PF06804 NlpB/DapX lipoprotein C0708_13550 PF00701 Dihydrodipicolinate synthetase family C0708_13555 PF01842 ACT domain C0708_13560 PF00578 AhpC/TSA family C0708_13565 PF03887 YfbU domain C0708_13570 PF04217 Protein of unknown function, DUF412 C0708_13575 PF00871 Acetokinase family C0708_13580 PF01515 Phosphate acetyl/butaryl transferase C0708_13580 PF07085 DRTGG domain C0708_13585 PF10369 Small subunit of acetolactate synthase C0708_13590 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C0708_13590 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C0708_13590 PF00205 Thiamine pyrophosphate enzyme, central domain C0708_13605 PF01569 PAP2 superfamily C0708_13615 PF00682 HMGL-like C0708_13615 PF08502 LeuA allosteric (dimerisation) domain C0708_13620 PF00180 Isocitrate/isopropylmalate dehydrogenase C0708_13625 PF00330 Aconitase family (aconitate hydratase) C0708_13630 PF00694 Aconitase C-terminal domain C0708_13655 PF00005 ABC transporter C0708_13660 PF02562 PhoH-like protein C0708_13660 PF13638 PIN domain C0708_13670 PF08343 Ribonucleotide reductase N-terminal C0708_13670 PF02867 Ribonucleotide reductase, barrel domain C0708_13670 PF00317 Ribonucleotide reductase, all-alpha domain C0708_13715 PF00202 Aminotransferase class-III C0708_13730 PF01569 PAP2 superfamily C0708_13740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_13740 PF03466 LysR substrate binding domain C0708_13745 PF00893 Small Multidrug Resistance protein C0708_13750 PF00893 Small Multidrug Resistance protein C0708_13755 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C0708_13760 PF00905 Penicillin binding protein transpeptidase domain C0708_13760 PF14814 Bifunctional transglycosylase second domain C0708_13760 PF00912 Transglycosylase C0708_13765 PF00271 Helicase conserved C-terminal domain C0708_13765 PF08482 ATP-dependent helicase C-terminal C0708_13765 PF00270 DEAD/DEAH box helicase C0708_13765 PF04408 Helicase associated domain (HA2) C0708_13775 PF03749 Sugar fermentation stimulation protein RE domain C0708_13775 PF17746 SfsA N-terminal OB domain C0708_13780 PF01258 Prokaryotic dksA/traR C4-type zinc finger C0708_13785 PF00749 tRNA synthetases class I (E and Q), catalytic domain C0708_13790 PF12626 Polymerase A arginine-rich C-terminus C0708_13790 PF01743 Poly A polymerase head domain C0708_13790 PF12627 Probable RNA and SrmB- binding site of polymerase A C0708_13795 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) C0708_13800 PF02548 Ketopantoate hydroxymethyltransferase C0708_13815 PF01061 ABC-2 type transporter C0708_13820 PF00005 ABC transporter C0708_13825 PF00156 Phosphoribosyl transferase domain C0708_13835 PF02441 Flavoprotein C0708_13840 PF01225 Mur ligase family, catalytic domain C0708_13840 PF08245 Mur ligase middle domain C0708_13840 PF02875 Mur ligase family, glutamate ligase domain C0708_13845 PF00719 Inorganic pyrophosphatase C0708_13860 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) C0708_13875 PF00005 ABC transporter C0708_13895 PF12729 Four helix bundle sensory module for signal transduction C0708_13895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C0708_13895 PF00672 HAMP domain C0708_13920 PF02080 TrkA-C domain C0708_13920 PF03600 Citrate transporter C0708_13925 PF00009 Elongation factor Tu GTP binding domain C0708_13930 PF01507 Phosphoadenosine phosphosulfate reductase family C0708_13935 PF14824 Sirohaem biosynthesis protein central C0708_13935 PF10414 Sirohaem synthase dimerisation region C0708_13935 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C0708_13940 PF16200 C-terminal region of band_7 C0708_13940 PF01145 SPFH domain / Band 7 family C0708_13945 PF01957 NfeD-like C-terminal, partner-binding C0708_13955 PF02894 Oxidoreductase family, C-terminal alpha/beta domain C0708_13955 PF01408 Oxidoreductase family, NAD-binding Rossmann fold C0708_13960 PF07690 Major Facilitator Superfamily C0708_13965 PF01725 Ham1 family C0708_13970 PF04055 Radical SAM superfamily C0708_13970 PF06969 HemN C-terminal domain C0708_13980 PF03889 Alternative ribosome-rescue factor A C0708_13990 PF13411 MerR HTH family regulatory protein C0708_13995 PF01808 AICARFT/IMPCHase bienzyme C0708_13995 PF02142 MGS-like domain C0708_14000 PF02844 Phosphoribosylglycinamide synthetase, N domain C0708_14000 PF02843 Phosphoribosylglycinamide synthetase, C domain C0708_14000 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain C0708_14005 PF01610 Transposase C0708_14005 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 C0708_14005 PF13542 Helix-turn-helix domain of transposase family ISL3 C0708_14035 PF04545 Sigma-70, region 4 C0708_14035 PF04539 Sigma-70 region 3 C0708_14035 PF04546 Sigma-70, non-essential region C0708_14035 PF04542 Sigma-70 region 2 C0708_14035 PF03979 Sigma-70 factor, region 1.1 C0708_14035 PF00140 Sigma-70 factor, region 1.2 C0708_14040 PF10410 DnaB-helicase binding domain of primase C0708_14040 PF08278 DNA primase DnaG DnaB-binding C0708_14040 PF08275 DNA primase catalytic core, N-terminal domain C0708_14040 PF01807 CHC2 zinc finger C0708_14045 PF09424 Yqey-like protein C0708_14050 PF01165 Ribosomal protein S21 C0708_14055 PF00814 Glycoprotease family C0708_14060 PF00140 Sigma-70 factor, region 1.2 C0708_14060 PF04545 Sigma-70, region 4 C0708_14060 PF04542 Sigma-70 region 2 C0708_14060 PF04539 Sigma-70 region 3 C0708_14070 PF09335 SNARE associated Golgi protein C0708_14085 PF01142 tRNA pseudouridine synthase D (TruD) C0708_14090 PF02542 YgbB family C0708_14095 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase C0708_14100 PF04977 Septum formation initiator C0708_14105 PF00113 Enolase, C-terminal TIM barrel domain C0708_14105 PF03952 Enolase, N-terminal domain C0708_14110 PF06418 CTP synthase N-terminus C0708_14110 PF00117 Glutamine amidotransferase class-I C0708_14115 PF03819 MazG nucleotide pyrophosphohydrolase domain C0708_14120 PF13291 ACT domain C0708_14120 PF02824 TGS domain C0708_14120 PF04607 Region found in RelA / SpoT proteins C0708_14125 PF01938 TRAM domain C0708_14125 PF05958 tRNA (Uracil-5-)-methyltransferase C0708_14135 PF07308 Protein of unknown function (DUF1456) C0708_14140 PF01510 N-acetylmuramoyl-L-alanine amidase C0708_14145 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ C0708_14150 PF11967 Recombination protein O N terminal C0708_14150 PF02565 Recombination protein O C terminal C0708_14155 PF07650 KH domain C0708_14155 PF01926 50S ribosome-binding GTPase C0708_14160 PF14622 Ribonuclease-III-like C0708_14160 PF00035 Double-stranded RNA binding motif C0708_14165 PF10502 Signal peptidase, peptidase S26 C0708_14170 PF00679 Elongation factor G C-terminus C0708_14170 PF00009 Elongation factor Tu GTP binding domain C0708_14170 PF03144 Elongation factor Tu domain 2 C0708_14170 PF06421 GTP-binding protein LepA C-terminus C0708_14180 PF17188 MucB/RseB C-terminal domain C0708_14180 PF03888 MucB/RseB N-terminal domain C0708_14185 PF03872 Anti sigma-E protein RseA, N-terminal domain C0708_14185 PF03873 Anti sigma-E protein RseA, C-terminal domain C0708_14190 PF04542 Sigma-70 region 2 C0708_14190 PF08281 Sigma-70, region 4 C0708_14195 PF00890 FAD binding domain C0708_14195 PF02910 Fumarate reductase flavoprotein C-term C0708_14205 PF03937 Flavinator of succinate dehydrogenase C0708_14210 PF01571 Aminomethyltransferase folate-binding domain C0708_14220 PF03466 LysR substrate binding domain C0708_14220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_14235 PF03091 CutA1 divalent ion tolerance protein C0708_14255 PF01116 Fructose-bisphosphate aldolase class-II C0708_14260 PF00162 Phosphoglycerate kinase C0708_14265 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain C0708_14265 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain C0708_14270 PF00480 ROK family C0708_14275 PF01208 Uroporphyrinogen decarboxylase (URO-D) C0708_14280 PF09297 NADH pyrophosphatase zinc ribbon domain C0708_14280 PF00293 NUDIX domain C0708_14290 PF00027 Cyclic nucleotide-binding domain C0708_14290 PF00520 Ion transport protein C0708_14295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C0708_14295 PF02743 Cache domain C0708_14295 PF00672 HAMP domain C0708_14305 PF08335 GlnD PII-uridylyltransferase C0708_14305 PF03710 Glutamate-ammonia ligase adenylyltransferase C0708_14320 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain C0708_14320 PF00326 Prolyl oligopeptidase family C0708_14325 PF00291 Pyridoxal-phosphate dependent enzyme C0708_14330 PF00528 Binding-protein-dependent transport system inner membrane component C0708_14335 PF00528 Binding-protein-dependent transport system inner membrane component C0708_14340 PF00005 ABC transporter C0708_14345 PF00497 Bacterial extracellular solute-binding proteins, family 3 C0708_14350 PF13194 Domain of unknown function (DUF4010) C0708_14355 PF14602 Hexapeptide repeat of succinyl-transferase C0708_14355 PF12464 Maltose acetyltransferase C0708_14385 PF14552 Tautomerase enzyme C0708_14395 PF03466 LysR substrate binding domain C0708_14395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_14400 PF00206 Lyase C0708_14400 PF14698 Argininosuccinate lyase C-terminal C0708_14410 PF00764 Arginosuccinate synthase C0708_14415 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain C0708_14415 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain C0708_14420 PF00696 Amino acid kinase family C0708_14425 PF02774 Semialdehyde dehydrogenase, dimerisation domain C0708_14425 PF01118 Semialdehyde dehydrogenase, NAD binding domain C0708_14430 PF01546 Peptidase family M20/M25/M40 C0708_14430 PF07687 Peptidase dimerisation domain C0708_14435 PF00311 Phosphoenolpyruvate carboxylase C0708_14440 PF00563 EAL domain C0708_14440 PF13426 PAS domain C0708_14440 PF00990 Diguanylate cyclase, GGDEF domain C0708_14440 PF08447 PAS fold C0708_14440 PF08448 PAS fold C0708_14440 PF05231 MASE1 C0708_14445 PF04073 Aminoacyl-tRNA editing domain C0708_14465 PF00392 Bacterial regulatory proteins, gntR family C0708_14465 PF00155 Aminotransferase class I and II C0708_14480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_14480 PF03466 LysR substrate binding domain C0708_14485 PF03788 LrgA family C0708_14490 PF04172 LrgB-like family C0708_14495 PF00696 Amino acid kinase family C0708_14495 PF03447 Homoserine dehydrogenase, NAD binding domain C0708_14495 PF00742 Homoserine dehydrogenase C0708_14505 PF01340 Met Apo-repressor, MetJ C0708_14525 PF00459 Inositol monophosphatase family C0708_14530 PF00293 NUDIX domain C0708_14535 PF13419 Haloacid dehalogenase-like hydrolase C0708_14545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_14545 PF03466 LysR substrate binding domain C0708_14550 PF00579 tRNA synthetases class I (W and Y) C0708_14550 PF01479 S4 domain C0708_14555 PF00196 Bacterial regulatory proteins, luxR family C0708_14560 PF01203 Type II secretion system (T2SS), protein N C0708_14565 PF04612 Type II secretion system (T2SS), protein M C0708_14570 PF05134 Type II secretion system (T2SS), protein L C0708_14570 PF12693 GspL periplasmic domain C0708_14575 PF03934 Type II secretion system (T2SS), protein K C0708_14580 PF07963 Prokaryotic N-terminal methylation motif C0708_14580 PF11612 Type II secretion system (T2SS), protein J C0708_14585 PF07963 Prokaryotic N-terminal methylation motif C0708_14585 PF02501 Type II secretion system (T2SS), protein I C0708_14590 PF12019 Type II transport protein GspH C0708_14590 PF07963 Prokaryotic N-terminal methylation motif C0708_14595 PF07963 Prokaryotic N-terminal methylation motif C0708_14595 PF08334 Type II secretion system (T2SS), protein G C0708_14600 PF00482 Type II secretion system (T2SS), protein F C0708_14605 PF00437 Type II/IV secretion system protein C0708_14610 PF00263 Bacterial type II and III secretion system protein C0708_14610 PF03958 Bacterial type II/III secretion system short domain C0708_14615 PF11356 Type II secretion system protein C C0708_14620 PF01479 S4 domain C0708_14625 PF01430 Hsp33 protein C0708_14630 PF01293 Phosphoenolpyruvate carboxykinase C0708_14635 PF00392 Bacterial regulatory proteins, gntR family C0708_14640 PF01321 Creatinase/Prolidase N-terminal domain C0708_14640 PF00557 Metallopeptidase family M24 C0708_14650 PF05433 Glycine zipper 2TM domain C0708_14655 PF01928 CYTH domain C0708_14660 PF01865 Protein of unknown function DUF47 C0708_14665 PF01384 Phosphate transporter family C0708_14670 PF12627 Probable RNA and SrmB- binding site of polymerase A C0708_14670 PF01743 Poly A polymerase head domain C0708_14670 PF01966 HD domain C0708_14675 PF01471 Putative peptidoglycan binding domain C0708_14675 PF13401 AAA domain C0708_14680 PF16537 Type II secretion system protein B C0708_14685 PF00633 Helix-hairpin-helix motif C0708_14685 PF10576 Iron-sulfur binding domain of endonuclease III C0708_14685 PF00730 HhH-GPD superfamily base excision DNA repair protein C0708_14685 PF14815 NUDIX domain C0708_14690 PF04362 Bacterial Fe(2+) trafficking C0708_14695 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain C0708_14695 PF01464 Transglycosylase SLT domain C0708_14705 PF00657 GDSL-like Lipase/Acylhydrolase C0708_14710 PF01389 OmpA-like transmembrane domain C0708_14710 PF00691 OmpA family C0708_14715 PF03886 ABC-type transport auxiliary lipoprotein component C0708_14720 PF02470 MlaD protein C0708_14725 PF04403 Paraquat-inducible protein A C0708_14730 PF17209 Hfq protein C0708_14735 PF13419 Haloacid dehalogenase-like hydrolase C0708_14745 PF00701 Dihydrodipicolinate synthetase family C0708_14755 PF00483 Nucleotidyl transferase C0708_14760 PF08323 Starch synthase catalytic domain C0708_14760 PF00534 Glycosyl transferases group 1 C0708_14800 PF03553 Na+/H+ antiporter family C0708_14805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_14805 PF03466 LysR substrate binding domain C0708_14810 PF13416 Bacterial extracellular solute-binding protein C0708_14820 PF00528 Binding-protein-dependent transport system inner membrane component C0708_14825 PF00528 Binding-protein-dependent transport system inner membrane component C0708_14830 PF00171 Aldehyde dehydrogenase family C0708_14835 PF01040 UbiA prenyltransferase family C0708_14860 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 C0708_14865 PF00115 Cytochrome C and Quinol oxidase polypeptide I C0708_14870 PF02790 Cytochrome C oxidase subunit II, transmembrane domain C0708_14870 PF00116 Cytochrome C oxidase subunit II, periplasmic domain C0708_14875 PF17176 tRNA-binding domain C0708_14875 PF05127 Helicase C0708_14875 PF13718 GNAT acetyltransferase 2 C0708_14875 PF08351 Domain of unknown function (DUF1726) C0708_14890 PF00210 Ferritin-like domain C0708_14895 PF02142 MGS-like domain C0708_14910 PF17763 Glutaminase/Asparaginase C-terminal domain C0708_14910 PF00710 Asparaginase, N-terminal C0708_14925 PF00356 Bacterial regulatory proteins, lacI family C0708_14930 PF00367 phosphotransferase system, EIIB C0708_14930 PF02378 Phosphotransferase system, EIIC C0708_14935 PF00128 Alpha amylase, catalytic domain C0708_14935 PF11941 Domain of unknown function (DUF3459) C0708_14940 PF12464 Maltose acetyltransferase C0708_14940 PF14602 Hexapeptide repeat of succinyl-transferase C0708_14945 PF01037 Lrp/AsnC ligand binding domain C0708_14950 PF00892 EamA-like transporter family C0708_14975 PF04222 Protein of unknown function (DUF416) C0708_14980 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C0708_14985 PF08525 Opacity-associated protein A N-terminal motif C0708_14985 PF01476 LysM domain C0708_14985 PF01551 Peptidase family M23 C0708_15005 PF01297 Zinc-uptake complex component A periplasmic C0708_15010 PF00005 ABC transporter C0708_15015 PF00950 ABC 3 transport family C0708_15030 PF03167 Uracil DNA glycosylase superfamily C0708_15040 PF01541 GIY-YIG catalytic domain C0708_15055 PF04012 PspA/IM30 family C0708_15085 PF00578 AhpC/TSA family C0708_15095 PF00684 DnaJ central domain C0708_15095 PF01556 DnaJ C terminal domain C0708_15095 PF00226 DnaJ domain C0708_15140 PF00521 DNA gyrase/topoisomerase IV, subunit A C0708_15140 PF03989 DNA gyrase C-terminal domain, beta-propeller C0708_15150 PF04632 Fusaric acid resistance protein family C0708_15155 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C0708_15155 PF00529 HlyD membrane-fusion protein of T1SS C0708_15160 PF07869 Protein of unknown function (DUF1656) C0708_15175 PF05728 Uncharacterised protein family (UPF0227) C0708_15180 PF00149 Calcineurin-like phosphoesterase C0708_15185 PF06853 Protein of unknown function (DUF1249) C0708_15190 PF00293 NUDIX domain C0708_15195 PF02321 Outer membrane efflux protein C0708_15205 PF03279 Bacterial lipid A biosynthesis acyltransferase C0708_15210 PF00149 Calcineurin-like phosphoesterase C0708_15210 PF02872 5'-nucleotidase, C-terminal domain C0708_15215 PF01810 LysE type translocator C0708_15220 PF03472 Autoinducer binding domain C0708_15220 PF00196 Bacterial regulatory proteins, luxR family C0708_15225 PF00765 Autoinducer synthase C0708_15230 PF03466 LysR substrate binding domain C0708_15230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_15235 PF08206 Ribonuclease B OB domain C0708_15235 PF00773 RNB domain C0708_15235 PF17876 Cold shock domain C0708_15240 PF02378 Phosphotransferase system, EIIC C0708_15240 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 C0708_15240 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit C0708_15245 PF08125 Mannitol dehydrogenase C-terminal domain C0708_15245 PF01232 Mannitol dehydrogenase Rossmann domain C0708_15250 PF05068 Mannitol repressor C0708_15290 PF07670 Nucleoside recognition C0708_15290 PF07662 Na+ dependent nucleoside transporter C-terminus C0708_15290 PF01773 Na+ dependent nucleoside transporter N-terminus C0708_15295 PF00270 DEAD/DEAH box helicase C0708_15295 PF03880 DbpA RNA binding domain C0708_15295 PF00271 Helicase conserved C-terminal domain C0708_15325 PF16582 Middle domain of thiamine pyrophosphate C0708_15325 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C0708_15325 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C0708_15330 PF12697 Alpha/beta hydrolase family C0708_15335 PF00378 Enoyl-CoA hydratase/isomerase C0708_15350 PF01752 Collagenase C0708_15350 PF08453 Peptidase family M9 N-terminal C0708_15355 PF02698 DUF218 domain C0708_15360 PF02777 Iron/manganese superoxide dismutases, C-terminal domain C0708_15360 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain C0708_15370 PF00561 alpha/beta hydrolase fold C0708_15390 PF12793 Sugar transport-related sRNA regulator N-term C0708_15390 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C0708_15400 PF01053 Cys/Met metabolism PLP-dependent enzyme C0708_15425 PF00106 short chain dehydrogenase C0708_15445 PF02308 MgtC family C0708_15460 PF00884 Sulfatase C0708_15465 PF01037 Lrp/AsnC ligand binding domain C0708_15475 PF04204 Homoserine O-succinyltransferase C0708_15485 PF02464 Competence-damaged protein C0708_15485 PF00994 Probable molybdopterin binding domain C0708_15490 PF04307 LexA-binding, inner membrane-associated putative hydrolase C0708_15510 PF07722 Peptidase C26 C0708_15520 PF13419 Haloacid dehalogenase-like hydrolase C0708_15525 PF00589 Phage integrase family C0708_15525 PF02899 Phage integrase, N-terminal SAM-like domain C0708_15535 PF01678 Diaminopimelate epimerase C0708_15540 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain C0708_15540 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain C0708_15550 PF01491 Frataxin-like domain C0708_15555 PF02230 Phospholipase/Carboxylesterase C0708_15560 PF01295 Adenylate cyclase, class-I C0708_15560 PF12633 Adenylate cyclase NT domain C0708_15565 PF03900 Porphobilinogen deaminase, C-terminal domain C0708_15565 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain C0708_15570 PF02602 Uroporphyrinogen-III synthase HemD C0708_15575 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase C0708_15580 PF07719 Tetratricopeptide repeat C0708_15580 PF07219 HemY protein N-terminus C0708_15585 PF01523 Putative modulator of DNA gyrase C0708_15590 PF04751 Protein of unknown function (DUF615) C0708_15600 PF04363 Protein of unknown function (DUF496) C0708_15630 PF01381 Helix-turn-helix C0708_15630 PF07883 Cupin domain C0708_15635 PF03594 Benzoate membrane transport protein C0708_15645 PF02219 Methylenetetrahydrofolate reductase C0708_15660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C0708_15660 PF00672 HAMP domain C0708_15665 PF03922 OmpW family C0708_15680 PF00436 Single-strand binding protein family C0708_15700 PF00313 'Cold-shock' DNA-binding domain C0708_15705 PF13006 Insertion element 4 transposase N-terminal C0708_15705 PF01609 Transposase DDE domain C0708_15715 PF00072 Response regulator receiver domain C0708_15715 PF00486 Transcriptional regulatory protein, C terminal C0708_15725 PF00672 HAMP domain C0708_15725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C0708_15735 PF00990 Diguanylate cyclase, GGDEF domain C0708_15735 PF08448 PAS fold C0708_15740 PF00543 Nitrogen regulatory protein P-II C0708_15745 PF00909 Ammonium Transporter Family C0708_15770 PF07681 DoxX C0708_15785 PF03466 LysR substrate binding domain C0708_15785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_15795 PF00392 Bacterial regulatory proteins, gntR family C0708_15795 PF07702 UTRA domain C0708_15820 PF08402 TOBE domain C0708_15820 PF00005 ABC transporter C0708_15830 PF00072 Response regulator receiver domain C0708_15830 PF00990 Diguanylate cyclase, GGDEF domain C0708_15850 PF00583 Acetyltransferase (GNAT) family C0708_15855 PF00199 Catalase C0708_15855 PF06628 Catalase-related immune-responsive C0708_15875 PF00293 NUDIX domain C0708_15885 PF00106 short chain dehydrogenase C0708_15890 PF04371 Porphyromonas-type peptidyl-arginine deiminase C0708_15900 PF00795 Carbon-nitrogen hydrolase C0708_15905 PF04371 Porphyromonas-type peptidyl-arginine deiminase C0708_15910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_15910 PF03466 LysR substrate binding domain C0708_15915 PF00158 Sigma-54 interaction domain C0708_15915 PF02954 Bacterial regulatory protein, Fis family C0708_15915 PF00989 PAS fold C0708_15925 PF02734 DAK2 domain C0708_15930 PF02733 Dak1 domain C0708_15935 PF00860 Permease family C0708_15940 PF03079 ARD/ARD' family C0708_15980 PF00009 Elongation factor Tu GTP binding domain C0708_15980 PF03144 Elongation factor Tu domain 2 C0708_15980 PF03143 Elongation factor Tu C-terminal domain C0708_15985 PF00009 Elongation factor Tu GTP binding domain C0708_15985 PF03764 Elongation factor G, domain IV C0708_15985 PF14492 Elongation Factor G, domain II C0708_15985 PF00679 Elongation factor G C-terminus C0708_15985 PF03144 Elongation factor Tu domain 2 C0708_15990 PF00177 Ribosomal protein S7p/S5e C0708_15995 PF00164 Ribosomal protein S12/S23 C0708_16000 PF04077 DsrH like protein C0708_16005 PF02635 DsrE/DsrF-like family C0708_16010 PF02635 DsrE/DsrF-like family C0708_16015 PF01042 Endoribonuclease L-PSP C0708_16020 PF13309 HTH domain C0708_16020 PF08348 YheO-like PAS domain C0708_16025 PF04997 RNA polymerase Rpb1, domain 1 C0708_16025 PF00623 RNA polymerase Rpb1, domain 2 C0708_16025 PF05000 RNA polymerase Rpb1, domain 4 C0708_16025 PF04998 RNA polymerase Rpb1, domain 5 C0708_16025 PF04983 RNA polymerase Rpb1, domain 3 C0708_16030 PF04565 RNA polymerase Rpb2, domain 3 C0708_16030 PF04561 RNA polymerase Rpb2, domain 2 C0708_16030 PF10385 RNA polymerase beta subunit external 1 domain C0708_16030 PF04560 RNA polymerase Rpb2, domain 7 C0708_16030 PF04563 RNA polymerase beta subunit C0708_16030 PF00562 RNA polymerase Rpb2, domain 6 C0708_16035 PF00542 Ribosomal protein L7/L12 C-terminal domain C0708_16035 PF16320 Ribosomal protein L7/L12 dimerisation domain C0708_16040 PF00466 Ribosomal protein L10 C0708_16045 PF00687 Ribosomal protein L1p/L10e family C0708_16050 PF03946 Ribosomal protein L11, N-terminal domain C0708_16050 PF00298 Ribosomal protein L11, RNA binding domain C0708_16055 PF02357 Transcription termination factor nusG C0708_16055 PF00467 KOW motif C0708_16060 PF00584 SecE/Sec61-gamma subunits of protein translocation complex C0708_16070 PF03143 Elongation factor Tu C-terminal domain C0708_16070 PF03144 Elongation factor Tu domain 2 C0708_16070 PF00009 Elongation factor Tu GTP binding domain C0708_16085 PF00485 Phosphoribulokinase / Uridine kinase family C0708_16090 PF02237 Biotin protein ligase C terminal domain C0708_16090 PF08279 HTH domain C0708_16090 PF03099 Biotin/lipoate A/B protein ligase family C0708_16095 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain C0708_16095 PF01565 FAD binding domain C0708_16100 PF02080 TrkA-C domain C0708_16100 PF02254 TrkA-N domain C0708_16105 PF02386 Cation transport protein C0708_16115 PF03264 NapC/NirT cytochrome c family, N-terminal region C0708_16120 PF18364 Molybdopterin oxidoreductase N-terminal domain C0708_16120 PF00384 Molybdopterin oxidoreductase C0708_16120 PF01568 Molydopterin dinucleotide binding domain C0708_16135 PF00072 Response regulator receiver domain C0708_16135 PF00486 Transcriptional regulatory protein, C terminal C0708_16170 PF00158 Sigma-54 interaction domain C0708_16170 PF00072 Response regulator receiver domain C0708_16200 PF00478 IMP dehydrogenase / GMP reductase domain C0708_16200 PF00571 CBS domain C0708_16210 PF01037 Lrp/AsnC ligand binding domain C0708_16215 PF03590 Aspartate-ammonia ligase C0708_16225 PF07724 AAA domain (Cdc48 subfamily) C0708_16225 PF17871 AAA lid domain C0708_16225 PF02861 Clp amino terminal domain, pathogenicity island component C0708_16225 PF10431 C-terminal, D2-small domain, of ClpB protein C0708_16225 PF00004 ATPase family associated with various cellular activities (AAA) C0708_16235 PF01479 S4 domain C0708_16235 PF00849 RNA pseudouridylate synthase C0708_16240 PF13525 Outer membrane lipoprotein C0708_16245 PF03313 Serine dehydratase alpha chain C0708_16250 PF13309 HTH domain C0708_16250 PF08348 YheO-like PAS domain C0708_16255 PF01609 Transposase DDE domain C0708_16255 PF13006 Insertion element 4 transposase N-terminal C0708_16260 PF02233 NAD(P) transhydrogenase beta subunit C0708_16265 PF05222 Alanine dehydrogenase/PNT, N-terminal domain C0708_16265 PF01262 Alanine dehydrogenase/PNT, C-terminal domain C0708_16265 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch C0708_16270 PF00465 Iron-containing alcohol dehydrogenase C0708_16280 PF08212 Lipocalin-like domain C0708_16290 PF00672 HAMP domain C0708_16290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C0708_16290 PF02743 Cache domain C0708_16325 PF02863 Arginine repressor, C-terminal domain C0708_16325 PF01316 Arginine repressor, DNA binding domain C0708_16330 PF03606 C4-dicarboxylate anaerobic carrier C0708_16335 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain C0708_16335 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain C0708_16340 PF00696 Amino acid kinase family C0708_16355 PF02743 Cache domain C0708_16355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C0708_16355 PF00672 HAMP domain C0708_16360 PF02653 Branched-chain amino acid transport system / permease component C0708_16365 PF00005 ABC transporter C0708_16370 PF13407 Periplasmic binding protein domain C0708_16380 PF00356 Bacterial regulatory proteins, lacI family C0708_16390 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain C0708_16390 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain C0708_16395 PF00288 GHMP kinases N terminal domain C0708_16395 PF08544 GHMP kinases C terminal C0708_16395 PF10509 Galactokinase galactose-binding signature C0708_16400 PF01263 Aldose 1-epimerase C0708_16410 PF02673 Bacitracin resistance protein BacA C0708_16415 PF12973 ChrR Cupin-like domain C0708_16420 PF04542 Sigma-70 region 2 C0708_16420 PF04545 Sigma-70, region 4 C0708_16430 PF00750 tRNA synthetases class I (R) C0708_16430 PF05746 DALR anticodon binding domain C0708_16430 PF03485 Arginyl tRNA synthetase N terminal domain C0708_16440 PF00227 Proteasome subunit C0708_16445 PF00004 ATPase family associated with various cellular activities (AAA) C0708_16445 PF10431 C-terminal, D2-small domain, of ClpB protein C0708_16445 PF07724 AAA domain (Cdc48 subfamily) C0708_16450 PF07690 Major Facilitator Superfamily C0708_16455 PF03466 LysR substrate binding domain C0708_16455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_16465 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C0708_16470 PF00005 ABC transporter C0708_16485 PF07992 Pyridine nucleotide-disulphide oxidoreductase C0708_16485 PF04324 BFD-like [2Fe-2S] binding domain C0708_16485 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C0708_16485 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain C0708_16485 PF18267 Rubredoxin NAD+ reductase C-terminal domain C0708_16490 PF13806 Rieske-like [2Fe-2S] domain C0708_16495 PF01226 Formate/nitrite transporter C0708_16500 PF10414 Sirohaem synthase dimerisation region C0708_16500 PF14824 Sirohaem biosynthesis protein central C0708_16500 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C0708_16510 PF03737 Aldolase/RraA C0708_16515 PF02592 Putative vitamin uptake transporter C0708_16525 PF02696 Uncharacterized ACR, YdiU/UPF0061 family C0708_16540 PF03061 Thioesterase superfamily C0708_16555 PF03473 MOSC domain C0708_16555 PF03475 3-alpha domain C0708_16560 PF00528 Binding-protein-dependent transport system inner membrane component C0708_16565 PF00528 Binding-protein-dependent transport system inner membrane component C0708_16570 PF08402 TOBE domain C0708_16570 PF00005 ABC transporter C0708_16575 PF13416 Bacterial extracellular solute-binding protein C0708_16580 PF13416 Bacterial extracellular solute-binding protein C0708_16590 PF00120 Glutamine synthetase, catalytic domain C0708_16595 PF01258 Prokaryotic dksA/traR C4-type zinc finger C0708_16610 PF05981 CreA protein C0708_16615 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C0708_16615 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C0708_16620 PF00012 Hsp70 protein C0708_16635 PF02903 Alpha amylase, N-terminal ig-like domain C0708_16635 PF00128 Alpha amylase, catalytic domain C0708_16645 PF09940 Domain of unknown function (DUF2172) C0708_16645 PF16254 Domain of unknown function (DUF4910) C0708_16645 PF16221 winged helix-turn-helix C0708_16680 PF05958 tRNA (Uracil-5-)-methyltransferase C0708_16695 PF00672 HAMP domain C0708_16695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C0708_16695 PF00512 His Kinase A (phospho-acceptor) domain C0708_16710 PF13460 NAD(P)H-binding C0708_16710 PF11066 Protein of unknown function (DUF2867) C0708_16715 PF01197 Ribosomal protein L31 C0708_16725 PF00440 Bacterial regulatory proteins, tetR family C0708_16735 PF01609 Transposase DDE domain C0708_16735 PF13006 Insertion element 4 transposase N-terminal C0708_16740 PF01389 OmpA-like transmembrane domain C0708_16740 PF00691 OmpA family C0708_16745 PF00585 C-terminal regulatory domain of Threonine dehydratase C0708_16745 PF00291 Pyridoxal-phosphate dependent enzyme C0708_16750 PF00920 Dehydratase family C0708_16755 PF01063 Amino-transferase class IV C0708_16765 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C0708_16765 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C0708_16765 PF00205 Thiamine pyrophosphate enzyme, central domain C0708_16775 PF13335 Magnesium chelatase, subunit ChlI C-terminal C0708_16775 PF01078 Magnesium chelatase, subunit ChlI C0708_16785 PF01553 Acyltransferase C0708_16790 PF04463 Protein of unknown function (DUF523) C0708_16800 PF00857 Isochorismatase family C0708_16805 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain C0708_16805 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family C0708_16815 PF00005 ABC transporter C0708_16820 PF00528 Binding-protein-dependent transport system inner membrane component C0708_16825 PF01323 DSBA-like thioredoxin domain C0708_16830 PF01636 Phosphotransferase enzyme family C0708_16835 PF12801 4Fe-4S binding domain C0708_16835 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase C0708_16835 PF13746 4Fe-4S dicluster domain C0708_16840 PF06288 Protein of unknown function (DUF1040) C0708_16845 PF00360 Phytochrome region C0708_16845 PF00563 EAL domain C0708_16845 PF01590 GAF domain C0708_16845 PF00990 Diguanylate cyclase, GGDEF domain C0708_16850 PF00376 MerR family regulatory protein C0708_16850 PF09278 MerR, DNA binding C0708_16855 PF00403 Heavy-metal-associated domain C0708_16860 PF00156 Phosphoribosyl transferase domain C0708_16865 PF03725 3' exoribonuclease family, domain 2 C0708_16865 PF01138 3' exoribonuclease family, domain 1 C0708_16870 PF03755 YicC-like family, N-terminal region C0708_16870 PF08340 Domain of unknown function (DUF1732) C0708_16880 PF13592 Winged helix-turn helix C0708_16880 PF13358 DDE superfamily endonuclease C0708_16905 PF13358 DDE superfamily endonuclease C0708_16905 PF13592 Winged helix-turn helix C0708_16930 PF13592 Winged helix-turn helix C0708_16930 PF13358 DDE superfamily endonuclease C0708_16935 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) C0708_16955 PF09344 CT1975-like protein C0708_16965 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) C0708_16970 PF18395 Cas3 C-terminal domain C0708_16970 PF18019 HD domain C0708_16995 PF01075 Glycosyltransferase family 9 (heptosyltransferase) C0708_17005 PF01075 Glycosyltransferase family 9 (heptosyltransferase) C0708_17010 PF01467 Cytidylyltransferase-like C0708_17015 PF04393 Protein of unknown function (DUF535) C0708_17030 PF00471 Ribosomal protein L33 C0708_17035 PF00830 Ribosomal L28 family C0708_17040 PF04002 RadC-like JAB domain C0708_17045 PF04127 DNA / pantothenate metabolism flavoprotein C0708_17045 PF02441 Flavoprotein C0708_17050 PF00692 dUTPase C0708_17055 PF00440 Bacterial regulatory proteins, tetR family C0708_17070 PF05552 Conserved TM helix C0708_17070 PF00924 Mechanosensitive ion channel C0708_17080 PF00342 Phosphoglucose isomerase C0708_17085 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain C0708_17085 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain C0708_17090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_17090 PF03466 LysR substrate binding domain C0708_17100 PF13380 CoA binding domain C0708_17100 PF00583 Acetyltransferase (GNAT) family C0708_17100 PF13607 Succinyl-CoA ligase like flavodoxin domain C0708_17125 PF12724 Flavodoxin domain C0708_17130 PF02386 Cation transport protein C0708_17140 PF00557 Metallopeptidase family M24 C0708_17145 PF00501 AMP-binding enzyme C0708_17145 PF13193 AMP-binding enzyme C-terminal domain C0708_17150 PF00378 Enoyl-CoA hydratase/isomerase C0708_17150 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C0708_17150 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C0708_17155 PF00108 Thiolase, N-terminal domain C0708_17155 PF02803 Thiolase, C-terminal domain C0708_17160 PF00072 Response regulator receiver domain C0708_17160 PF00486 Transcriptional regulatory protein, C terminal C0708_17165 PF00512 His Kinase A (phospho-acceptor) domain C0708_17165 PF00672 HAMP domain C0708_17165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C0708_17170 PF01547 Bacterial extracellular solute-binding protein C0708_17195 PF01206 Sulfurtransferase TusA C0708_17200 PF01042 Endoribonuclease L-PSP C0708_17215 PF00691 OmpA family C0708_17215 PF13488 Glycine zipper C0708_17225 PF00857 Isochorismatase family C0708_17230 PF03352 Methyladenine glycosylase C0708_17235 PF02091 Glycyl-tRNA synthetase alpha subunit C0708_17240 PF02092 Glycyl-tRNA synthetase beta subunit C0708_17240 PF05746 DALR anticodon binding domain C0708_17250 PF00563 EAL domain C0708_17250 PF03707 Bacterial signalling protein N terminal repeat C0708_17250 PF00990 Diguanylate cyclase, GGDEF domain C0708_17275 PF01212 Beta-eliminating lyase C0708_17285 PF12801 4Fe-4S binding domain C0708_17295 PF07992 Pyridine nucleotide-disulphide oxidoreductase C0708_17295 PF18113 Rubredoxin binding C-terminal domain C0708_17300 PF00258 Flavodoxin C0708_17300 PF00301 Rubredoxin C0708_17300 PF00753 Metallo-beta-lactamase superfamily C0708_17305 PF01590 GAF domain C0708_17305 PF00158 Sigma-54 interaction domain C0708_17310 PF00356 Bacterial regulatory proteins, lacI family C0708_17315 PF13458 Periplasmic binding protein C0708_17320 PF02653 Branched-chain amino acid transport system / permease component C0708_17330 PF00005 ABC transporter C0708_17330 PF12399 Branched-chain amino acid ATP-binding cassette transporter C0708_17335 PF00005 ABC transporter C0708_17345 PF01810 LysE type translocator C0708_17350 PF00581 Rhodanese-like domain C0708_17355 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease C0708_17355 PF01694 Rhomboid family C0708_17360 PF12262 Bacterial virulence factor lipase N-terminal C0708_17365 PF04380 Membrane fusogenic activity C0708_17370 PF00175 Oxidoreductase NAD-binding domain C0708_17385 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C0708_17385 PF07497 Rho termination factor, RNA-binding domain C0708_17385 PF07498 Rho termination factor, N-terminal domain C0708_17390 PF00085 Thioredoxin C0708_17400 PF02541 Ppx/GppA phosphatase family C0708_17415 PF04445 Putative SAM-dependent methyltransferase C0708_17420 PF03707 Bacterial signalling protein N terminal repeat C0708_17420 PF00563 EAL domain C0708_17420 PF00990 Diguanylate cyclase, GGDEF domain C0708_17425 PF01432 Peptidase family M3 C0708_17430 PF00490 Delta-aminolevulinic acid dehydratase C0708_17440 PF00902 Sec-independent protein translocase protein (TatC) C0708_17445 PF02416 mttA/Hcf106 family C0708_17450 PF02416 mttA/Hcf106 family C0708_17455 PF03109 ABC1 family C0708_17460 PF02036 SCP-2 sterol transfer family C0708_17465 PF01209 ubiE/COQ5 methyltransferase family C0708_17470 PF02537 CrcB-like protein, Camphor Resistance (CrcB) C0708_17475 PF07969 Amidohydrolase family C0708_17510 PF03544 Gram-negative bacterial TonB protein C-terminal C0708_17515 PF02472 Biopolymer transport protein ExbD/TolR C0708_17520 PF01618 MotA/TolQ/ExbB proton channel family C0708_17525 PF01618 MotA/TolQ/ExbB proton channel family C0708_17535 PF03472 Autoinducer binding domain C0708_17535 PF00196 Bacterial regulatory proteins, luxR family C0708_17540 PF13180 PDZ domain C0708_17545 PF01435 Peptidase family M48 C0708_17555 PF03707 Bacterial signalling protein N terminal repeat C0708_17555 PF00990 Diguanylate cyclase, GGDEF domain C0708_17555 PF00563 EAL domain C0708_17565 PF17871 AAA lid domain C0708_17565 PF00004 ATPase family associated with various cellular activities (AAA) C0708_17565 PF10431 C-terminal, D2-small domain, of ClpB protein C0708_17565 PF07724 AAA domain (Cdc48 subfamily) C0708_17565 PF02861 Clp amino terminal domain, pathogenicity island component C0708_17570 PF00011 Hsp20/alpha crystallin family C0708_17595 PF06527 TniQ C0708_17595 PF15978 Tn7-like transposition protein D C0708_17600 PF11426 Tn7 transposition regulator TnsC C0708_17600 PF13401 AAA domain C0708_17605 PF00665 Integrase core domain C0708_17610 PF08722 TnsA endonuclease N terminal C0708_17610 PF08721 TnsA endonuclease C terminal C0708_17630 PF02384 N-6 DNA Methylase C0708_17630 PF12161 HsdM N-terminal domain C0708_17640 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) C0708_17640 PF04851 Type III restriction enzyme, res subunit C0708_17640 PF08463 EcoEI R protein C-terminal C0708_17640 PF00271 Helicase conserved C-terminal domain C0708_17650 PF18623 TnsE C-terminal domain C0708_17655 PF15978 Tn7-like transposition protein D C0708_17655 PF06527 TniQ C0708_17660 PF13401 AAA domain C0708_17660 PF11426 Tn7 transposition regulator TnsC C0708_17665 PF00665 Integrase core domain C0708_17670 PF08722 TnsA endonuclease N terminal C0708_17670 PF08721 TnsA endonuclease C terminal C0708_17675 PF01380 SIS domain C0708_17680 PF00455 DeoR C terminal sensor domain C0708_17680 PF08220 DeoR-like helix-turn-helix domain C0708_17685 PF00486 Transcriptional regulatory protein, C terminal C0708_17685 PF00072 Response regulator receiver domain C0708_17690 PF00672 HAMP domain C0708_17690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C0708_17690 PF00512 His Kinase A (phospho-acceptor) domain C0708_17695 PF00905 Penicillin binding protein transpeptidase domain C0708_17700 PF06123 Inner membrane protein CreD C0708_17705 PF12804 MobA-like NTP transferase domain C0708_17705 PF00132 Bacterial transferase hexapeptide (six repeats) C0708_17705 PF14602 Hexapeptide repeat of succinyl-transferase C0708_17710 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain C0708_17710 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain C0708_17715 PF02874 ATP synthase alpha/beta family, beta-barrel domain C0708_17715 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C0708_17720 PF00231 ATP synthase C0708_17725 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C0708_17725 PF02874 ATP synthase alpha/beta family, beta-barrel domain C0708_17725 PF00306 ATP synthase alpha/beta chain, C terminal domain C0708_17730 PF00213 ATP synthase delta (OSCP) subunit C0708_17735 PF00430 ATP synthase B/B' CF(0) C0708_17740 PF00137 ATP synthase subunit C C0708_17745 PF00119 ATP synthase A chain C0708_17755 PF17762 HTH domain found in ParB protein C0708_17755 PF02195 ParB-like nuclease domain C0708_17760 PF13614 AAA domain C0708_17765 PF02527 rRNA small subunit methyltransferase G C0708_17770 PF01134 Glucose inhibited division protein A C0708_17770 PF13932 GidA associated domain C0708_17775 PF00258 Flavodoxin C0708_17780 PF00593 TonB dependent receptor C0708_17780 PF07715 TonB-dependent Receptor Plug Domain C0708_17790 PF00005 ABC transporter C0708_17805 PF01609 Transposase DDE domain C0708_17805 PF13006 Insertion element 4 transposase N-terminal C0708_17810 PF13657 HipA N-terminal domain C0708_17810 PF07804 HipA-like C-terminal domain C0708_17830 PF02796 Helix-turn-helix domain of resolvase C0708_17830 PF00239 Resolvase, N terminal domain C0708_17860 PF00589 Phage integrase family C0708_17860 PF02899 Phage integrase, N-terminal SAM-like domain C0708_17865 PF01926 50S ribosome-binding GTPase C0708_17865 PF12631 MnmE helical domain C0708_17865 PF10396 GTP-binding protein TrmE N-terminus C0708_17870 PF14849 YidC periplasmic domain C0708_17870 PF02096 60Kd inner membrane protein C0708_17875 PF01809 Putative membrane protein insertion efficiency factor C0708_17880 PF00825 Ribonuclease P C0708_17885 PF00468 Ribosomal protein L34 C0708_17895 PF00528 Binding-protein-dependent transport system inner membrane component C0708_17900 PF00497 Bacterial extracellular solute-binding proteins, family 3 C0708_17905 PF11638 DnaA N-terminal domain C0708_17905 PF08299 Bacterial dnaA protein helix-turn-helix C0708_17905 PF00308 Bacterial dnaA protein C0708_17910 PF02767 DNA polymerase III beta subunit, central domain C0708_17910 PF00712 DNA polymerase III beta subunit, N-terminal domain C0708_17910 PF02768 DNA polymerase III beta subunit, C-terminal domain C0708_17915 PF02463 RecF/RecN/SMC N terminal domain C0708_17920 PF01751 Toprim domain C0708_17920 PF00204 DNA gyrase B C0708_17920 PF00986 DNA gyrase B subunit, carboxyl terminus C0708_17920 PF18053 DNA gyrase B subunit insert domain C0708_17920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C0708_17930 PF02311 AraC-like ligand binding domain C0708_17930 PF12833 Helix-turn-helix domain C0708_17935 PF12706 Beta-lactamase superfamily domain C0708_17945 PF00011 Hsp20/alpha crystallin family C0708_17950 PF00155 Aminotransferase class I and II C0708_17970 PF00486 Transcriptional regulatory protein, C terminal C0708_17970 PF00072 Response regulator receiver domain C0708_17990 PF03814 Potassium-transporting ATPase A subunit C0708_18000 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C0708_18000 PF07992 Pyridine nucleotide-disulphide oxidoreductase C0708_18005 PF00512 His Kinase A (phospho-acceptor) domain C0708_18005 PF00497 Bacterial extracellular solute-binding proteins, family 3 C0708_18005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C0708_18010 PF00873 AcrB/AcrD/AcrF family C0708_18015 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C0708_18020 PF00440 Bacterial regulatory proteins, tetR family C0708_18060 PF00132 Bacterial transferase hexapeptide (six repeats) C0708_18065 PF00588 SpoU rRNA Methylase family C0708_18065 PF12105 SpoU, rRNA methylase, C-terminal C0708_18070 PF04607 Region found in RelA / SpoT proteins C0708_18070 PF13291 ACT domain C0708_18070 PF02824 TGS domain C0708_18075 PF01192 RNA polymerase Rpb6 C0708_18080 PF00625 Guanylate kinase C0708_18105 PF00892 EamA-like transporter family C0708_18125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_18125 PF03466 LysR substrate binding domain C0708_18130 PF00579 tRNA synthetases class I (W and Y) C0708_18135 PF00582 Universal stress protein family C0708_18140 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase C0708_18140 PF07055 Enoyl reductase FAD binding domain C0708_18140 PF12241 Trans-2-enoyl-CoA reductase catalytic region C0708_18145 PF00990 Diguanylate cyclase, GGDEF domain C0708_18145 PF05230 MASE2 domain C0708_18150 PF00210 Ferritin-like domain C0708_18160 PF07690 Major Facilitator Superfamily C0708_18165 PF01810 LysE type translocator C0708_18180 PF05598 Transposase domain (DUF772) C0708_18180 PF01609 Transposase DDE domain C0708_18200 PF06580 Histidine kinase C0708_18200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C0708_18200 PF07694 5TMR of 5TMR-LYT C0708_18205 PF04397 LytTr DNA-binding domain C0708_18205 PF00072 Response regulator receiver domain C0708_18210 PF07690 Major Facilitator Superfamily C0708_18215 PF02222 ATP-grasp domain C0708_18215 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain C0708_18220 PF00731 AIR carboxylase C0708_18225 PF00593 TonB dependent receptor C0708_18225 PF07715 TonB-dependent Receptor Plug Domain C0708_18230 PF01177 Asp/Glu/Hydantoin racemase C0708_18275 PF00899 ThiF family C0708_18280 PF02657 Fe-S metabolism associated domain C0708_18285 PF00266 Aminotransferase class-V C0708_18290 PF13361 UvrD-like helicase C-terminal domain C0708_18290 PF00580 UvrD/REP helicase N-terminal domain C0708_18300 PF13442 Cytochrome C oxidase, cbb3-type, subunit III C0708_18305 PF08240 Alcohol dehydrogenase GroES-like domain C0708_18305 PF00107 Zinc-binding dehydrogenase C0708_18310 PF00155 Aminotransferase class I and II C0708_18315 PF00440 Bacterial regulatory proteins, tetR family C0708_18315 PF08360 QacR-like protein, C-terminal region C0708_18320 PF01370 NAD dependent epimerase/dehydratase family C0708_18345 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) C0708_18360 PF03611 PTS system sugar-specific permease component C0708_18370 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 C0708_18395 PF03748 Flagellar basal body-associated protein FliL C0708_18400 PF04345 Chorismate lyase C0708_18405 PF01040 UbiA prenyltransferase family C0708_18410 PF01553 Acyltransferase C0708_18415 PF01726 LexA DNA binding domain C0708_18415 PF00717 Peptidase S24-like C0708_18425 PF02630 SCO1/SenC C0708_18430 PF01554 MatE C0708_18435 PF00588 SpoU rRNA Methylase family C0708_18440 PF00672 HAMP domain C0708_18440 PF00512 His Kinase A (phospho-acceptor) domain C0708_18440 PF16527 Two-component sensor protein CpxA, periplasmic domain C0708_18440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C0708_18445 PF00486 Transcriptional regulatory protein, C terminal C0708_18445 PF00072 Response regulator receiver domain C0708_18450 PF16916 Dimerisation domain of Zinc Transporter C0708_18450 PF01545 Cation efflux family C0708_18455 PF06426 Serine acetyltransferase, N-terminal C0708_18455 PF00132 Bacterial transferase hexapeptide (six repeats) C0708_18475 PF01367 5'-3' exonuclease, C-terminal SAM fold C0708_18475 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain C0708_18475 PF00476 DNA polymerase family A C0708_18475 PF01612 3'-5' exonuclease C0708_18480 PF00132 Bacterial transferase hexapeptide (six repeats) C0708_18515 PF00356 Bacterial regulatory proteins, lacI family C0708_18520 PF02929 Beta galactosidase small chain C0708_18520 PF16353 Domain of unknown function(DUF4981) C0708_18520 PF02837 Glycosyl hydrolases family 2, sugar binding domain C0708_18520 PF02836 Glycosyl hydrolases family 2, TIM barrel domain C0708_18520 PF00703 Glycosyl hydrolases family 2 C0708_18525 PF04074 YhcH/YjgK/YiaL C0708_18545 PF01588 Putative tRNA binding domain C0708_18555 PF13593 SBF-like CPA transporter family (DUF4137) C0708_18575 PF00756 Putative esterase C0708_18580 PF00107 Zinc-binding dehydrogenase C0708_18580 PF08240 Alcohol dehydrogenase GroES-like domain C0708_18585 PF03466 LysR substrate binding domain C0708_18585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_18620 PF13361 UvrD-like helicase C-terminal domain C0708_18620 PF00580 UvrD/REP helicase N-terminal domain C0708_18630 PF03466 LysR substrate binding domain C0708_18630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_18645 PF14001 YdfZ protein C0708_18665 PF06206 CpeT/CpcT family (DUF1001) C0708_18670 PF01810 LysE type translocator C0708_18680 PF00892 EamA-like transporter family C0708_18685 PF00171 Aldehyde dehydrogenase family C0708_18690 PF01381 Helix-turn-helix C0708_18690 PF07883 Cupin domain C0708_18700 PF00171 Aldehyde dehydrogenase family C0708_18705 PF00117 Glutamine amidotransferase class-I C0708_18705 PF02540 NAD synthase C0708_18705 PF00958 GMP synthase C terminal domain C0708_18720 PF02082 Transcriptional regulator C0708_18735 PF02646 RmuC family C0708_18750 PF01189 16S rRNA methyltransferase RsmB/F C0708_18750 PF01029 NusB family C0708_18755 PF00551 Formyl transferase C0708_18755 PF02911 Formyl transferase, C-terminal domain C0708_18760 PF01327 Polypeptide deformylase C0708_18770 PF02481 DNA recombination-mediator protein A C0708_18770 PF17782 DprA winged helix domain C0708_18775 PF04361 Protein of unknown function (DUF494) C0708_18780 PF01396 Topoisomerase DNA binding C4 zinc finger C0708_18785 PF01300 Telomere recombination C0708_18790 PF01218 Coproporphyrinogen III oxidase C0708_18795 PF08501 Shikimate dehydrogenase substrate binding domain C0708_18795 PF01488 Shikimate / quinate 5-dehydrogenase C0708_18795 PF18317 Shikimate 5'-dehydrogenase C-terminal domain C0708_18805 PF01926 50S ribosome-binding GTPase C0708_18810 PF00034 Cytochrome c C0708_18820 PF10675 Protein of unknown function (DUF2489) C0708_18825 PF06969 HemN C-terminal domain C0708_18825 PF04055 Radical SAM superfamily C0708_18830 PF00962 Adenosine/AMP deaminase C0708_18835 PF00072 Response regulator receiver domain C0708_18835 PF00158 Sigma-54 interaction domain C0708_18835 PF02954 Bacterial regulatory protein, Fis family C0708_18855 PF00120 Glutamine synthetase, catalytic domain C0708_18855 PF03951 Glutamine synthetase, beta-Grasp domain C0708_18865 PF03631 Virulence factor BrkB C0708_18870 PF02580 D-Tyr-tRNA(Tyr) deacylase C0708_18890 PF00270 DEAD/DEAH box helicase C0708_18890 PF00271 Helicase conserved C-terminal domain C0708_18890 PF17191 RecG wedge domain C0708_18895 PF13091 PLD-like domain C0708_18900 PF02447 GntP family permease C0708_18905 PF01202 Shikimate kinase C0708_18910 PF00920 Dehydratase family C0708_18915 PF01081 KDPG and KHG aldolase C0708_18930 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family C0708_18930 PF00356 Bacterial regulatory proteins, lacI family C0708_18940 PF01551 Peptidase family M23 C0708_18945 PF01676 Metalloenzyme superfamily C0708_18945 PF06415 BPG-independent PGAM N-terminus (iPGM_N) C0708_18950 PF00581 Rhodanese-like domain C0708_18955 PF02556 Preprotein translocase subunit SecB C0708_18965 PF01609 Transposase DDE domain C0708_18965 PF13006 Insertion element 4 transposase N-terminal C0708_18970 PF01521 Iron-sulphur cluster biosynthesis C0708_18970 PF01106 NifU-like domain C0708_18975 PF00156 Phosphoribosyl transferase domain C0708_18980 PF00561 alpha/beta hydrolase fold C0708_18995 PF09371 Tex-like protein N-terminal domain C0708_18995 PF16921 Tex protein YqgF-like domain C0708_18995 PF17674 HHH domain C0708_18995 PF00575 S1 RNA binding domain C0708_19005 PF00486 Transcriptional regulatory protein, C terminal C0708_19005 PF00072 Response regulator receiver domain C0708_19010 PF00512 His Kinase A (phospho-acceptor) domain C0708_19010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C0708_19010 PF00672 HAMP domain C0708_19020 PF00338 Ribosomal protein S10p/S20e C0708_19025 PF00297 Ribosomal protein L3 C0708_19030 PF00573 Ribosomal protein L4/L1 family C0708_19035 PF00276 Ribosomal protein L23 C0708_19040 PF00181 Ribosomal Proteins L2, RNA binding domain C0708_19040 PF03947 Ribosomal Proteins L2, C-terminal domain C0708_19045 PF00203 Ribosomal protein S19 C0708_19050 PF00237 Ribosomal protein L22p/L17e C0708_19055 PF00189 Ribosomal protein S3, C-terminal domain C0708_19055 PF07650 KH domain C0708_19060 PF00252 Ribosomal protein L16p/L10e C0708_19065 PF00831 Ribosomal L29 protein C0708_19070 PF00366 Ribosomal protein S17 C0708_19075 PF00238 Ribosomal protein L14p/L23e C0708_19080 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 C0708_19080 PF00467 KOW motif C0708_19085 PF00281 Ribosomal protein L5 C0708_19085 PF00673 ribosomal L5P family C-terminus C0708_19090 PF00253 Ribosomal protein S14p/S29e C0708_19095 PF00410 Ribosomal protein S8 C0708_19100 PF00347 Ribosomal protein L6 C0708_19105 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast C0708_19110 PF00333 Ribosomal protein S5, N-terminal domain C0708_19110 PF03719 Ribosomal protein S5, C-terminal domain C0708_19115 PF00327 Ribosomal protein L30p/L7e C0708_19120 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A C0708_19125 PF00344 SecY translocase C0708_19130 PF00444 Ribosomal protein L36 C0708_19135 PF00416 Ribosomal protein S13/S18 C0708_19140 PF00411 Ribosomal protein S11 C0708_19145 PF01479 S4 domain C0708_19145 PF00163 Ribosomal protein S4/S9 N-terminal domain C0708_19150 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain C0708_19150 PF01000 RNA polymerase Rpb3/RpoA insert domain C0708_19150 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain C0708_19155 PF01196 Ribosomal protein L17 C0708_19210 PF02254 TrkA-N domain C0708_19210 PF00999 Sodium/hydrogen exchanger family C0708_19215 PF02525 Flavodoxin-like fold C0708_19220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_19220 PF03466 LysR substrate binding domain C0708_19240 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain C0708_19240 PF00326 Prolyl oligopeptidase family C0708_19245 PF16868 NMT1-like family C0708_19260 PF07947 YhhN family C0708_19265 PF07690 Major Facilitator Superfamily C0708_19270 PF13533 Biotin-lipoyl like C0708_19275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_19275 PF03466 LysR substrate binding domain C0708_19285 PF00375 Sodium:dicarboxylate symporter family C0708_19290 PF10678 Protein of unknown function (DUF2492) C0708_19295 PF01914 MarC family integral membrane protein C0708_19300 PF03466 LysR substrate binding domain C0708_19300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_19305 PF02416 mttA/Hcf106 family C0708_19315 PF01464 Transglycosylase SLT domain C0708_19315 PF00497 Bacterial extracellular solute-binding proteins, family 3 C0708_19320 PF13091 PLD-like domain C0708_19330 PF00440 Bacterial regulatory proteins, tetR family C0708_19335 PF07226 Protein of unknown function (DUF1422) C0708_19350 PF02881 SRP54-type protein, helical bundle domain C0708_19350 PF00448 SRP54-type protein, GTPase domain C0708_19355 PF00005 ABC transporter C0708_19360 PF18075 FtsX extracellular domain C0708_19365 PF00140 Sigma-70 factor, region 1.2 C0708_19365 PF04545 Sigma-70, region 4 C0708_19365 PF04542 Sigma-70 region 2 C0708_19370 PF00484 Carbonic anhydrase C0708_19375 PF07702 UTRA domain C0708_19375 PF00392 Bacterial regulatory proteins, gntR family C0708_19385 PF00491 Arginase family C0708_19390 PF01175 Urocanase Rossmann-like domain C0708_19390 PF17391 Urocanase N-terminal domain C0708_19390 PF17392 Urocanase C-terminal domain C0708_19395 PF00221 Aromatic amino acid lyase C0708_19440 PF00263 Bacterial type II and III secretion system protein C0708_19440 PF03958 Bacterial type II/III secretion system short domain C0708_19455 PF00437 Type II/IV secretion system protein C0708_19460 PF00482 Type II secretion system (T2SS), protein F C0708_19480 PF07963 Prokaryotic N-terminal methylation motif C0708_19480 PF08334 Type II secretion system (T2SS), protein G C0708_19485 PF00114 Pilin (bacterial filament) C0708_19485 PF07963 Prokaryotic N-terminal methylation motif C0708_19515 PF04085 rod shape-determining protein MreC C0708_19520 PF04093 rod shape-determining protein MreD C0708_19525 PF02545 Maf-like protein C0708_19540 PF00795 Carbon-nitrogen hydrolase C0708_19545 PF01523 Putative modulator of DNA gyrase C0708_19555 PF01914 MarC family integral membrane protein C0708_19560 PF07690 Major Facilitator Superfamily C0708_19570 PF04228 Putative neutral zinc metallopeptidase C0708_19590 PF00999 Sodium/hydrogen exchanger family C0708_19605 PF08443 RimK-like ATP-grasp domain C0708_19605 PF18030 RimK PreATP-grasp domain C0708_19615 PF00486 Transcriptional regulatory protein, C terminal C0708_19615 PF00072 Response regulator receiver domain C0708_19630 PF13667 ThiC-associated domain C0708_19630 PF01964 Radical SAM ThiC family C0708_19635 PF02581 Thiamine monophosphate synthase C0708_19640 PF00899 ThiF family C0708_19650 PF05690 Thiazole biosynthesis protein ThiG C0708_19655 PF06968 Biotin and Thiamin Synthesis associated domain C0708_19655 PF04055 Radical SAM superfamily C0708_19665 PF00005 ABC transporter C0708_19685 PF00132 Bacterial transferase hexapeptide (six repeats) C0708_19690 PF13036 Peptidoglycan-synthase activator LpoB C0708_19700 PF06055 Exopolysaccharide synthesis, ExoD C0708_19715 PF08803 Putative mono-oxygenase ydhR C0708_19720 PF01638 HxlR-like helix-turn-helix C0708_19725 PF13508 Acetyltransferase (GNAT) domain C0708_19725 PF00583 Acetyltransferase (GNAT) family C0708_19740 PF07715 TonB-dependent Receptor Plug Domain C0708_19740 PF00593 TonB dependent receptor C0708_19755 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded C0708_19760 PF13006 Insertion element 4 transposase N-terminal C0708_19760 PF01609 Transposase DDE domain C0708_19765 PF03692 Putative zinc- or iron-chelating domain C0708_19770 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) C0708_19775 PF01722 BolA-like protein C0708_19785 PF05494 MlaC protein C0708_19790 PF02470 MlaD protein C0708_19795 PF02405 Permease MlaE C0708_19800 PF00005 ABC transporter C0708_19820 PF03968 OstA-like protein C0708_19825 PF00005 ABC transporter C0708_19825 PF12399 Branched-chain amino acid ATP-binding cassette transporter C0708_19830 PF00309 Sigma-54 factor, Activator interacting domain (AID) C0708_19830 PF04552 Sigma-54, DNA binding domain C0708_19830 PF04963 Sigma-54 factor, core binding domain C0708_19835 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein C0708_19840 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 C0708_19845 PF03668 P-loop ATPase protein family C0708_19850 PF00381 PTS HPr component phosphorylation site C0708_19855 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 C0708_19855 PF02378 Phosphotransferase system, EIIC C0708_19855 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit C0708_19860 PF07071 KDGP aldolase C0708_19865 PF03841 L-seryl-tRNA selenium transferase C0708_19870 PF01979 Amidohydrolase family C0708_19900 PF13180 PDZ domain C0708_19905 PF00595 PDZ domain C0708_19905 PF13180 PDZ domain C0708_19915 PF03969 AFG1-like ATPase C0708_19920 PF00572 Ribosomal protein L13 C0708_19925 PF00380 Ribosomal protein S9/S16 C0708_19930 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal C0708_19930 PF00355 Rieske [2Fe-2S] domain C0708_19935 PF00033 Cytochrome b/b6/petB C0708_19935 PF00032 Cytochrome b(C-terminal)/b6/petD C0708_19945 PF02798 Glutathione S-transferase, N-terminal domain C0708_19945 PF00043 Glutathione S-transferase, C-terminal domain C0708_19950 PF04386 Stringent starvation protein B C0708_19955 PF04972 BON domain C0708_19960 PF13580 SIS domain C0708_19965 PF02021 Uncharacterised protein family UPF0102 C0708_19970 PF04348 LppC putative lipoprotein C0708_19975 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C0708_19985 PF02381 MraZ protein, putative antitoxin-like C0708_19990 PF01795 MraW methylase family C0708_19995 PF04999 Cell division protein FtsL C0708_20000 PF03717 Penicillin-binding Protein dimerisation domain C0708_20000 PF00905 Penicillin binding protein transpeptidase domain C0708_20010 PF01225 Mur ligase family, catalytic domain C0708_20010 PF02875 Mur ligase family, glutamate ligase domain C0708_20010 PF08245 Mur ligase middle domain C0708_20015 PF00953 Glycosyl transferase family 4 C0708_20015 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 C0708_20025 PF01098 Cell cycle protein C0708_20030 PF03033 Glycosyltransferase family 28 N-terminal domain C0708_20030 PF04101 Glycosyltransferase family 28 C-terminal domain C0708_20035 PF01225 Mur ligase family, catalytic domain C0708_20035 PF02875 Mur ligase family, glutamate ligase domain C0708_20035 PF08245 Mur ligase middle domain C0708_20045 PF02491 SHS2 domain inserted in FTSA C0708_20050 PF12327 FtsZ family, C-terminal domain C0708_20050 PF00091 Tubulin/FtsZ family, GTPase domain C0708_20055 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase C0708_20065 PF02810 SEC-C motif C0708_20065 PF07517 SecA DEAD-like domain C0708_20065 PF01043 SecA preprotein cross-linking domain C0708_20065 PF07516 SecA Wing and Scaffold domain C0708_20075 PF00293 NUDIX domain C0708_20080 PF03884 DNA gyrase inhibitor YacG C0708_20085 PF07072 Cell division protein C0708_20090 PF01121 Dephospho-CoA kinase C0708_20100 PF00482 Type II secretion system (T2SS), protein F C0708_20105 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain C0708_20105 PF00437 Type II/IV secretion system protein C0708_20110 PF07963 Prokaryotic N-terminal methylation motif C0708_20115 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain C0708_20115 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain C0708_20125 PF01510 N-acetylmuramoyl-L-alanine amidase C0708_20135 PF00392 Bacterial regulatory proteins, gntR family C0708_20135 PF07729 FCD domain C0708_20140 PF00456 Transketolase, thiamine diphosphate binding domain C0708_20140 PF17831 Pyruvate dehydrogenase E1 component middle domain C0708_20145 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) C0708_20145 PF02817 e3 binding domain C0708_20145 PF00364 Biotin-requiring enzyme C0708_20150 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C0708_20150 PF07992 Pyridine nucleotide-disulphide oxidoreductase C0708_20160 PF12729 Four helix bundle sensory module for signal transduction C0708_20160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C0708_20160 PF00672 HAMP domain C0708_20165 PF12729 Four helix bundle sensory module for signal transduction C0708_20165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C0708_20165 PF00672 HAMP domain C0708_20190 PF01810 LysE type translocator C0708_20195 PF04030 D-arabinono-1,4-lactone oxidase C0708_20195 PF01565 FAD binding domain C0708_20200 PF07683 Cobalamin synthesis protein cobW C-terminal domain C0708_20200 PF02492 CobW/HypB/UreG, nucleotide-binding domain C0708_20215 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) C0708_20220 PF02152 Dihydroneopterin aldolase C0708_20265 PF02028 BCCT, betaine/carnitine/choline family transporter C0708_20270 PF00488 MutS domain V C0708_20270 PF05190 MutS family domain IV C0708_20270 PF05188 MutS domain II C0708_20270 PF05192 MutS domain III C0708_20270 PF01624 MutS domain I C0708_20280 PF02464 Competence-damaged protein C0708_20285 PF00154 recA bacterial DNA recombination protein C0708_20290 PF02631 RecX family C0708_20295 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain C0708_20295 PF01411 tRNA synthetases class II (A) C0708_20295 PF02272 DHHA1 domain C0708_20300 PF01842 ACT domain C0708_20300 PF13840 ACT domain C0708_20300 PF00696 Amino acid kinase family C0708_20305 PF02599 Global regulator protein family C0708_20340 PF00768 D-alanyl-D-alanine carboxypeptidase C0708_20345 PF09335 SNARE associated Golgi protein C0708_20355 PF08264 Anticodon-binding domain of tRNA C0708_20355 PF00133 tRNA synthetases class I (I, L, M and V) C0708_20355 PF10458 Valyl tRNA synthetase tRNA binding arm C0708_20360 PF04364 DNA polymerase III chi subunit, HolC C0708_20365 PF00883 Cytosol aminopeptidase family, catalytic domain C0708_20365 PF02789 Cytosol aminopeptidase family, N-terminal domain C0708_20370 PF03739 Lipopolysaccharide export system permease LptF/LptG C0708_20375 PF03739 Lipopolysaccharide export system permease LptF/LptG C0708_20390 PF00589 Phage integrase family C0708_20455 PF05958 tRNA (Uracil-5-)-methyltransferase C0708_20455 PF01938 TRAM domain C0708_20465 PF14245 Type IV pilin PilA C0708_20465 PF07963 Prokaryotic N-terminal methylation motif C0708_20470 PF01026 TatD related DNase C0708_20475 PF01773 Na+ dependent nucleoside transporter N-terminus C0708_20475 PF07662 Na+ dependent nucleoside transporter C-terminus C0708_20475 PF07670 Nucleoside recognition C0708_20485 PF01791 DeoC/LacD family aldolase C0708_20490 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain C0708_20490 PF02885 Glycosyl transferase family, helical bundle domain C0708_20490 PF00591 Glycosyl transferase family, a/b domain C0708_20495 PF01676 Metalloenzyme superfamily C0708_20500 PF01048 Phosphorylase superfamily C0708_20505 PF00563 EAL domain C0708_20505 PF05231 MASE1 C0708_20505 PF08447 PAS fold C0708_20505 PF08448 PAS fold C0708_20505 PF00990 Diguanylate cyclase, GGDEF domain C0708_20505 PF13426 PAS domain C0708_20515 PF18429 Domain of unknown function (DUF5609) C0708_20530 PF18073 Rubredoxin metal binding domain C0708_20540 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ C0708_20545 PF00216 Bacterial DNA-binding protein C0708_20560 PF01207 Dihydrouridine synthase (Dus) C0708_20565 PF01475 Ferric uptake regulator family C0708_20580 PF05525 Branched-chain amino acid transport protein C0708_20590 PF00271 Helicase conserved C-terminal domain C0708_20590 PF00270 DEAD/DEAH box helicase C0708_20595 PF03883 Peroxide stress protein YaaA C0708_20605 PF00437 Type II/IV secretion system protein C0708_20610 PF01168 Alanine racemase, N-terminal domain C0708_20615 PF03807 NADP oxidoreductase coenzyme F420-dependent C0708_20615 PF14748 Pyrroline-5-carboxylate reductase dimerisation C0708_20620 PF02325 YGGT family C0708_20625 PF02594 Uncharacterised ACR, YggU family COG1872 C0708_20645 PF06062 Uncharacterised protein family (UPF0231) C0708_20650 PF05651 Putative sugar diacid recognition C0708_20650 PF13556 PucR C-terminal helix-turn-helix domain C0708_20650 PF17853 GGDEF-like domain C0708_20655 PF02447 GntP family permease C0708_20660 PF02595 Glycerate kinase family C0708_20670 PF00255 Glutathione peroxidase C0708_20675 PF03466 LysR substrate binding domain C0708_20675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_20680 PF07662 Na+ dependent nucleoside transporter C-terminus C0708_20680 PF07670 Nucleoside recognition C0708_20680 PF01773 Na+ dependent nucleoside transporter N-terminus C0708_20695 PF00472 RF-1 domain C0708_20715 PF08402 TOBE domain C0708_20715 PF00005 ABC transporter C0708_20720 PF04261 Dyp-type peroxidase family C0708_20725 PF02863 Arginine repressor, C-terminal domain C0708_20725 PF01316 Arginine repressor, DNA binding domain C0708_20730 PF00005 ABC transporter C0708_20735 PF00497 Bacterial extracellular solute-binding proteins, family 3 C0708_20740 PF00528 Binding-protein-dependent transport system inner membrane component C0708_20745 PF00528 Binding-protein-dependent transport system inner membrane component C0708_20750 PF00056 lactate/malate dehydrogenase, NAD binding domain C0708_20750 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain C0708_20760 PF08238 Sel1 repeat C0708_20765 PF00042 Globin C0708_20765 PF00175 Oxidoreductase NAD-binding domain C0708_20765 PF00970 Oxidoreductase FAD-binding domain C0708_20770 PF02082 Transcriptional regulator C0708_20775 PF01595 Cyclin M transmembrane N-terminal domain C0708_20775 PF00571 CBS domain C0708_20775 PF03471 Transporter associated domain C0708_20780 PF01578 Cytochrome C assembly protein C0708_20790 PF01609 Transposase DDE domain C0708_20790 PF13006 Insertion element 4 transposase N-terminal C0708_20795 PF00886 Ribosomal protein S16 C0708_20800 PF05239 PRC-barrel domain C0708_20800 PF01782 RimM N-terminal domain C0708_20805 PF01746 tRNA (Guanine-1)-methyltransferase C0708_20810 PF01245 Ribosomal protein L19 C0708_20820 PF02976 DNA mismatch repair enzyme MutH C0708_20835 PF01790 Prolipoprotein diacylglyceryl transferase C0708_20840 PF00303 Thymidylate synthase C0708_20845 PF06965 Na+/H+ antiporter 1 C0708_20855 PF03466 LysR substrate binding domain C0708_20855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_20860 PF01022 Bacterial regulatory protein, arsR family C0708_20865 PF01649 Ribosomal protein S20 C0708_20870 PF03023 Lipid II flippase MurJ C0708_20875 PF01687 Riboflavin kinase C0708_20875 PF06574 FAD synthetase C0708_20880 PF06827 Zinc finger found in FPG and IleRS C0708_20880 PF08264 Anticodon-binding domain of tRNA C0708_20880 PF00133 tRNA synthetases class I (I, L, M and V) C0708_20885 PF01252 Signal peptidase (SPase) II C0708_20890 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C0708_20895 PF02401 LytB protein C0708_20900 PF14245 Type IV pilin PilA C0708_20900 PF07963 Prokaryotic N-terminal methylation motif C0708_20935 PF00795 Carbon-nitrogen hydrolase C0708_20935 PF02540 NAD synthase C0708_20940 PF00543 Nitrogen regulatory protein P-II C0708_20950 PF02664 S-Ribosylhomocysteinase (LuxS) C0708_20955 PF00990 Diguanylate cyclase, GGDEF domain C0708_20965 PF08032 RNA 2'-O ribose methyltransferase substrate binding C0708_20965 PF00588 SpoU rRNA Methylase family C0708_20975 PF13673 Acetyltransferase (GNAT) domain C0708_20985 PF01566 Natural resistance-associated macrophage protein C0708_20990 PF01250 Ribosomal protein S6 C0708_20995 PF01084 Ribosomal protein S18 C0708_21000 PF01281 Ribosomal protein L9, N-terminal domain C0708_21000 PF03948 Ribosomal protein L9, C-terminal domain C0708_21005 PF00970 Oxidoreductase FAD-binding domain C0708_21005 PF00175 Oxidoreductase NAD-binding domain C0708_21025 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C0708_21035 PF00550 Phosphopantetheine attachment site C0708_21035 PF14765 Polyketide synthase dehydratase C0708_21035 PF08990 Erythronolide synthase docking C0708_21035 PF08240 Alcohol dehydrogenase GroES-like domain C0708_21035 PF00698 Acyl transferase domain C0708_21035 PF02801 Beta-ketoacyl synthase, C-terminal domain C0708_21035 PF16197 Ketoacyl-synthetase C-terminal extension C0708_21035 PF00109 Beta-ketoacyl synthase, N-terminal domain C0708_21035 PF08659 KR domain C0708_21040 PF09335 SNARE associated Golgi protein C0708_21045 PF05193 Peptidase M16 inactive domain C0708_21045 PF00675 Insulinase (Peptidase family M16) C0708_21050 PF04262 Glutamate-cysteine ligase C0708_21055 PF03605 Anaerobic c4-dicarboxylate membrane transporter C0708_21060 PF10415 Fumarase C C-terminus C0708_21060 PF00206 Lyase C0708_21065 PF04186 FxsA cytoplasmic membrane protein C0708_21075 PF00166 Chaperonin 10 Kd subunit C0708_21080 PF00118 TCP-1/cpn60 chaperonin family C0708_21090 PF00563 EAL domain C0708_21090 PF00990 Diguanylate cyclase, GGDEF domain C0708_21090 PF03707 Bacterial signalling protein N terminal repeat C0708_21100 PF00849 RNA pseudouridylate synthase C0708_21105 PF00176 SNF2 family N-terminal domain C0708_21105 PF12137 RNA polymerase recycling family C-terminal C0708_21105 PF00271 Helicase conserved C-terminal domain C0708_21105 PF18337 RapA N-terminal Tudor like domain C0708_21105 PF18339 RapA N-terminal Tudor like domain 1 C0708_21145 PF00528 Binding-protein-dependent transport system inner membrane component C0708_21150 PF00528 Binding-protein-dependent transport system inner membrane component C0708_21155 PF12857 TOBE-like domain C0708_21155 PF00005 ABC transporter C0708_21160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_21160 PF03466 LysR substrate binding domain C0708_21165 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading C0708_21165 PF18416 N-acetylglucosamine binding protein domain 2 C0708_21205 PF11230 Protein of unknown function (DUF3029) C0708_21210 PF04055 Radical SAM superfamily C0708_21220 PF03466 LysR substrate binding domain C0708_21220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_21250 PF03170 Bacterial cellulose synthase subunit C0708_21255 PF01270 Glycosyl hydrolases family 8 C0708_21260 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) C0708_21265 PF02583 Metal-sensitive transcriptional repressor C0708_21280 PF18494 Pullulanase Ins domain C0708_21280 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) C0708_21280 PF11852 Domain of unknown function (DUF3372) C0708_21280 PF03714 Bacterial pullanase-associated domain C0708_21280 PF17967 Pullulanase N2 domain C0708_21290 PF08534 Redoxin C0708_21300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C0708_21300 PF08447 PAS fold C0708_21310 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C0708_21320 PF10952 Protein of unknown function (DUF2753) C0708_21325 PF00378 Enoyl-CoA hydratase/isomerase C0708_21340 PF00106 short chain dehydrogenase C0708_21345 PF00929 Exonuclease C0708_21350 PF03129 Anticodon binding domain C0708_21350 PF04073 Aminoacyl-tRNA editing domain C0708_21350 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C0708_21355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C0708_21355 PF00672 HAMP domain C0708_21360 PF01330 RuvA N terminal domain C0708_21360 PF07499 RuvA, C-terminal domain C0708_21365 PF17864 RuvB AAA lid domain C0708_21365 PF05496 Holliday junction DNA helicase RuvB P-loop domain C0708_21365 PF05491 RuvB C-terminal winged helix domain C0708_21375 PF01654 Cytochrome bd terminal oxidase subunit I C0708_21380 PF02322 Cytochrome bd terminal oxidase subunit II C0708_21385 PF08173 Membrane bound YbgT-like protein C0708_21390 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) C0708_21395 PF03061 Thioesterase superfamily C0708_21400 PF01618 MotA/TolQ/ExbB proton channel family C0708_21405 PF02472 Biopolymer transport protein ExbD/TolR C0708_21420 PF00691 OmpA family C0708_21425 PF16331 TolA binding protein trimerisation C0708_21425 PF13174 Tetratricopeptide repeat C0708_21500 PF00672 HAMP domain C0708_21500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C0708_21505 PF02445 Quinolinate synthetase A protein C0708_21510 PF01263 Aldose 1-epimerase C0708_21515 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain C0708_21515 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain C0708_21520 PF02446 4-alpha-glucanotransferase C0708_21525 PF02806 Alpha amylase, C-terminal all-beta domain C0708_21525 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) C0708_21525 PF00128 Alpha amylase, catalytic domain C0708_21530 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) C0708_21530 PF00128 Alpha amylase, catalytic domain C0708_21535 PF01641 SelR domain C0708_21555 PF16884 N-terminal domain of oxidoreductase C0708_21555 PF00107 Zinc-binding dehydrogenase C0708_21560 PF01047 MarR family C0708_21575 PF01037 Lrp/AsnC ligand binding domain C0708_21585 PF07690 Major Facilitator Superfamily C0708_21605 PF00209 Sodium:neurotransmitter symporter family C0708_21625 PF00392 Bacterial regulatory proteins, gntR family C0708_21625 PF00155 Aminotransferase class I and II C0708_21640 PF01177 Asp/Glu/Hydantoin racemase C0708_21650 PF00501 AMP-binding enzyme C0708_21660 PF00583 Acetyltransferase (GNAT) family C0708_21675 PF05762 VWA domain containing CoxE-like protein C0708_21680 PF00990 Diguanylate cyclase, GGDEF domain C0708_21680 PF00563 EAL domain C0708_21680 PF08448 PAS fold C0708_21685 PF00990 Diguanylate cyclase, GGDEF domain C0708_21685 PF00072 Response regulator receiver domain C0708_21690 PF16658 Class II release factor RF3, C-terminal domain C0708_21690 PF03144 Elongation factor Tu domain 2 C0708_21690 PF00009 Elongation factor Tu GTP binding domain C0708_21700 PF01758 Sodium Bile acid symporter family C0708_21705 PF00583 Acetyltransferase (GNAT) family C0708_21710 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C0708_21720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C0708_21720 PF03466 LysR substrate binding domain C0708_21725 PF04371 Porphyromonas-type peptidyl-arginine deiminase C0708_21735 PF00753 Metallo-beta-lactamase superfamily C0708_21755 PF02311 AraC-like ligand binding domain C0708_21755 PF12833 Helix-turn-helix domain C0708_21760 PF00175 Oxidoreductase NAD-binding domain C0708_21760 PF00111 2Fe-2S iron-sulfur cluster binding domain C0708_21760 PF00970 Oxidoreductase FAD-binding domain C0708_21765 PF00270 DEAD/DEAH box helicase C0708_21765 PF00271 Helicase conserved C-terminal domain C0708_21770 PF00990 Diguanylate cyclase, GGDEF domain C0708_21775 PF05643 Putative bacterial lipoprotein (DUF799) C0708_21785 PF03783 Curli production assembly/transport component CsgG C0708_21805 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase C0708_21815 PF00005 ABC transporter C0708_21815 PF02687 FtsX-like permease family C0708_21815 PF12704 MacB-like periplasmic core domain C0708_21820 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C0708_21850 PF00445 Ribonuclease T2 family C0708_21855 PF03060 Nitronate monooxygenase C0708_21880 PF01810 LysE type translocator C0708_21885 PF02954 Bacterial regulatory protein, Fis family C0708_21890 PF01207 Dihydrouridine synthase (Dus) C0708_21900 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C0708_21930 PF00072 Response regulator receiver domain C0708_21935 PF00854 POT family C0708_21940 PF00483 Nucleotidyl transferase C0708_21950 PF00459 Inositol monophosphatase family C0708_21955 PF03795 YCII-related domain C0708_21960 PF04279 Intracellular septation protein A C0708_21965 PF00282 Pyridoxal-dependent decarboxylase conserved domain C0708_21975 PF02080 TrkA-C domain C0708_21975 PF06826 Predicted Permease Membrane Region C0708_22145 PF00294 pfkB family carbohydrate kinase C0708_22270 PF02653 Branched-chain amino acid transport system / permease component C0708_22440 PF06005 Cell division protein ZapB C0708_22665 PF00529 HlyD membrane-fusion protein of T1SS C0708_22665 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C0708_22685 PF01526 Tn3 transposase DDE domain C0708_22685 PF13700 Domain of unknown function (DUF4158) C0708_22695 PF13495 Phage integrase, N-terminal SAM-like domain C0708_22695 PF00589 Phage integrase family C0708_22715 PF02384 N-6 DNA Methylase C0708_22725 PF00905 Penicillin binding protein transpeptidase domain C0708_22730 PF00132 Bacterial transferase hexapeptide (six repeats) C0708_22740 PF00893 Small Multidrug Resistance protein C0708_22745 PF00809 Pterin binding enzyme C0708_22760 PF13610 DDE domain C0708_22765 PF00239 Resolvase, N terminal domain C0708_22765 PF02796 Helix-turn-helix domain of resolvase C0708_22770 PF07690 Major Facilitator Superfamily C0708_22775 PF02909 Tetracyclin repressor-like, C-terminal domain C0708_22775 PF00440 Bacterial regulatory proteins, tetR family C0708_22785 PF13700 Domain of unknown function (DUF4158) C0708_22785 PF01526 Tn3 transposase DDE domain C0708_22790 PF02796 Helix-turn-helix domain of resolvase C0708_22790 PF00239 Resolvase, N terminal domain C0708_22795 PF00563 EAL domain C0708_22795 PF03707 Bacterial signalling protein N terminal repeat C0708_22795 PF00990 Diguanylate cyclase, GGDEF domain C0708_22800 PF05052 MerE protein C0708_22805 PF13411 MerR HTH family regulatory protein C0708_22810 PF00403 Heavy-metal-associated domain C0708_22810 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C0708_22810 PF07992 Pyridine nucleotide-disulphide oxidoreductase C0708_22815 PF00403 Heavy-metal-associated domain C0708_22820 PF02411 MerT mercuric transport protein C0708_22825 PF00376 MerR family regulatory protein C0708_22825 PF09278 MerR, DNA binding C0708_22835 PF01636 Phosphotransferase enzyme family C0708_22840 PF02796 Helix-turn-helix domain of resolvase C0708_22840 PF00239 Resolvase, N terminal domain C0708_22850 PF13005 zinc-finger binding domain of transposase IS66 C0708_22850 PF03050 Transposase IS66 family C0708_22850 PF13817 IS66 C-terminal element C0708_22850 PF13007 Transposase C of IS166 homeodomain C0708_22865 PF11871 Domain of unknown function (DUF3391) C0708_22865 PF01966 HD domain C0708_22895 PF02796 Helix-turn-helix domain of resolvase C0708_22895 PF00239 Resolvase, N terminal domain C0708_22930 PF05717 IS66 Orf2 like protein C0708_22935 PF03050 Transposase IS66 family C0708_22935 PF13817 IS66 C-terminal element C0708_22935 PF13007 Transposase C of IS166 homeodomain C0708_22935 PF13005 zinc-finger binding domain of transposase IS66 C0708_23050 PF00196 Bacterial regulatory proteins, luxR family C0708_23050 PF00563 EAL domain C0708_23060 PF02384 N-6 DNA Methylase C0708_23065 PF06250 YhcG PDDEXK nuclease domain C0708_23065 PF17761 DUF1016 N-terminal domain C0708_23075 PF11867 Domain of unknown function (DUF3387) C0708_23075 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) C0708_23075 PF18766 SWI2/SNF2 ATPase C0708_23140 PF18607 ParA helix turn helix domain C0708_23140 PF13614 AAA domain C0708_23175 PF00712 DNA polymerase III beta subunit, N-terminal domain C0708_23175 PF02767 DNA polymerase III beta subunit, central domain C0708_23175 PF02768 DNA polymerase III beta subunit, C-terminal domain C0708_23180 PF02195 ParB-like nuclease domain C0708_23180 PF17762 HTH domain found in ParB protein C0708_23195 PF13005 zinc-finger binding domain of transposase IS66 C0708_23195 PF13007 Transposase C of IS166 homeodomain C0708_23195 PF13817 IS66 C-terminal element C0708_23195 PF03050 Transposase IS66 family C0708_23215 PF00816 H-NS histone family C0708_23240 PF07655 Secretin N-terminal domain C0708_23240 PF00263 Bacterial type II and III secretion system protein C0708_23255 PF00437 Type II/IV secretion system protein C0708_23485 PF13358 DDE superfamily endonuclease C0708_23485 PF13592 Winged helix-turn helix C0708_23500 PF11740 Plasmid replication region DNA-binding N-term C0708_23505 PF02899 Phage integrase, N-terminal SAM-like domain C0708_23505 PF00589 Phage integrase family C0708_23610 PF02321 Outer membrane efflux protein C0708_23615 PF00873 AcrB/AcrD/AcrF family C0708_23620 PF00529 HlyD membrane-fusion protein of T1SS C0708_23620 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C0708_23640 PF13700 Domain of unknown function (DUF4158) C0708_23640 PF01526 Tn3 transposase DDE domain C0708_23650 PF13495 Phage integrase, N-terminal SAM-like domain C0708_23650 PF00589 Phage integrase family C0708_23705 PF06834 TraU protein C0708_23820 PF13614 AAA domain C0708_23825 PF06613 KorB C-terminal beta-barrel domain C0708_23825 PF08535 KorB domain C0708_23825 PF02195 ParB-like nuclease domain C0708_23875 PF00589 Phage integrase family C0708_23910 PF00717 Peptidase S24-like C0708_23970 PF00816 H-NS histone family C0708_23975 PF05818 Enterobacterial TraT complement resistance protein C0708_23990 PF02195 ParB-like nuclease domain C0708_23990 PF17762 HTH domain found in ParB protein C0708_24035 PF02195 ParB-like nuclease domain C0708_24035 PF17762 HTH domain found in ParB protein C0708_24055 PF01555 DNA methylase C0708_24090 PF18272 single-stranded DNA binding TraI N-terminal subdomain C0708_24090 PF07057 DNA helicase TraI C0708_24090 PF18340 DNA relaxase TraI 2B/2B-like domain C0708_24090 PF08751 TrwC relaxase C0708_24140 PF06834 TraU protein C0708_24230 PF13614 AAA domain C0708_24240 PF02195 ParB-like nuclease domain C0708_24240 PF06613 KorB C-terminal beta-barrel domain C0708_24240 PF08535 KorB domain